Query 018460
Match_columns 355
No_of_seqs 219 out of 1406
Neff 4.6
Searched_HMMs 29240
Date Mon Mar 25 15:37:30 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/018460.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/018460hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 1pw4_A Glycerol-3-phosphate tr 57.8 1.1E+02 0.0038 27.8 19.3 57 151-209 127-183 (451)
2 3o7q_A L-fucose-proton symport 43.6 1.9E+02 0.0064 26.2 21.5 56 148-205 122-177 (438)
3 2gfp_A EMRD, multidrug resista 27.7 1.3E+02 0.0044 26.9 6.7 67 152-220 97-165 (375)
4 1pw4_A Glycerol-3-phosphate tr 27.6 3.4E+02 0.012 24.5 13.2 60 156-217 359-421 (451)
5 3o7q_A L-fucose-proton symport 12.4 7.5E+02 0.026 22.1 13.1 53 152-208 356-408 (438)
6 2esy_A LUNG surfactant protein 12.4 88 0.003 20.5 1.4 11 25-35 1-11 (32)
7 4aps_A DI-OR tripeptide H+ sym 12.2 8.2E+02 0.028 22.4 22.5 61 148-210 113-175 (491)
8 2xut_A Proton/peptide symporte 11.3 9E+02 0.031 22.4 11.9 70 147-218 113-187 (524)
9 2vv5_A MSCS, small-conductance 6.4 1.2E+03 0.041 21.0 7.2 43 312-354 41-90 (286)
10 3arc_L Photosystem II reaction 6.1 3.6E+02 0.012 18.2 2.4 20 174-193 8-27 (37)
No 1
>1pw4_A Glycerol-3-phosphate transporter; transmembrane, inner membrane, major facilitator superfamily, secondary active membrane transporter; 3.30A {Escherichia coli} SCOP: f.38.1.1
Probab=57.84 E-value=1.1e+02 Score=27.81 Aligned_cols=57 Identities=9% Similarity=-0.151 Sum_probs=35.2
Q ss_pred HHHHHHhchhHHHHHHHHhCcCCCCHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhh
Q 018460 151 YILEQSLSVDNLFVFVLIFKYFKVPVMYQNRVLSYGIAGAIVFRLSLILLGTATLQRFE 209 (355)
Q Consensus 151 ~lLE~sLSvDNa~VialI~~~f~lP~~~q~raL~~GI~gAivlRiifi~~g~~Ll~~f~ 209 (355)
.+.=...+.-+....+++.+. .|+++|.++.-+--.+.-+--++...++.++++.+.
T Consensus 127 ~l~G~~~~~~~~~~~~~i~~~--~~~~~r~~~~~~~~~~~~~g~~~g~~~~~~l~~~~g 183 (451)
T 1pw4_A 127 FLCGWFQGMGWPPCGRTMVHW--WSQKERGGIVSVWNCAHNVGGGIPPLLFLLGMAWFN 183 (451)
T ss_dssp HHHHHHHHHTHHHHHHHHHTT--CTTTHHHHHHHHHHHHHHHHHTSHHHHHHHHHHHTC
T ss_pred HHHHHHhhhccchHHHHHHHH--CCchhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 333344555667777888887 577777776554434444555666777777666544
No 2
>3o7q_A L-fucose-proton symporter; transporter, multi-PASS membrane protei transport protein; HET: BNG; 3.14A {Escherichia coli} PDB: 3o7p_A*
Probab=43.59 E-value=1.9e+02 Score=26.22 Aligned_cols=56 Identities=9% Similarity=0.023 Sum_probs=35.1
Q ss_pred HHHHHHHHHhchhHHHHHHHHhCcCCCCHHhHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 018460 148 FAGYILEQSLSVDNLFVFVLIFKYFKVPVMYQNRVLSYGIAGAIVFRLSLILLGTATL 205 (355)
Q Consensus 148 ltl~lLE~sLSvDNa~VialI~~~f~lP~~~q~raL~~GI~gAivlRiifi~~g~~Ll 205 (355)
+.-.+.=...+.-+....+++.+. .|+++|.++.-+--.+.-+-.++...++.++.
T Consensus 122 ~~~~l~G~~~~~~~~~~~~~~~~~--~~~~~r~~~~~~~~~~~~~g~~~g~~~~~~l~ 177 (438)
T 3o7q_A 122 VGLFIIAAGLGCLETAANPFVTVL--GPESSGHFRLNLAQTFNSFGAIIAVVFGQSLI 177 (438)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHS--SCSTTHHHHHHHHHHHHHHHHHHHHHHTTHHH
T ss_pred HHHHHHHhhHHHhhhhHHHHHHHH--cCchhHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 333444455566777777888886 58888877654444444455666666666666
No 3
>2gfp_A EMRD, multidrug resistance protein D; membrane protein, multidrug transporter; 3.50A {Escherichia coli}
Probab=27.69 E-value=1.3e+02 Score=26.92 Aligned_cols=67 Identities=15% Similarity=0.003 Sum_probs=36.9
Q ss_pred HHHHHhchhHHHHHHHHhCcCCCCHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhH--HHHHHHHHHH
Q 018460 152 ILEQSLSVDNLFVFVLIFKYFKVPVMYQNRVLSYGIAGAIVFRLSLILLGTATLQRFEA--VNLVLAGILL 220 (355)
Q Consensus 152 lLE~sLSvDNa~VialI~~~f~lP~~~q~raL~~GI~gAivlRiifi~~g~~Ll~~f~~--I~liGG~fLl 220 (355)
+.-...+.-+....+.+.+. .|+++|.++.-+--.+.-+.-++...++.++.+.+.| ..++.++..+
T Consensus 97 l~g~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~l~~~~~~~~~~~~~~~~~~ 165 (375)
T 2gfp_A 97 MQGMGTGVGGVMARTLPRDL--YERTQLRHANSLLNMGILVSPLLAPLIGGLLDTMWNWRACYLFLLVLCA 165 (375)
T ss_dssp HHHHHHHHHHHHHHHHHHHH--HHTSSCCSHHHHHHHHHHHHHHHHHHHHHHSSCHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHhhhhhHHHHHHHH--CCHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHhccHHHHHHHHHHHHH
Confidence 33444455566666666665 4666666665444344445566667777777654444 4444444333
No 4
>1pw4_A Glycerol-3-phosphate transporter; transmembrane, inner membrane, major facilitator superfamily, secondary active membrane transporter; 3.30A {Escherichia coli} SCOP: f.38.1.1
Probab=27.59 E-value=3.4e+02 Score=24.47 Aligned_cols=60 Identities=8% Similarity=0.025 Sum_probs=33.4
Q ss_pred HhchhHHHHHHHHhCcCCCCHHhHHHHHHHHHHHHHH-HHHHHHHHHHHHHHhh--hHHHHHHHH
Q 018460 156 SLSVDNLFVFVLIFKYFKVPVMYQNRVLSYGIAGAIV-FRLSLILLGTATLQRF--EAVNLVLAG 217 (355)
Q Consensus 156 sLSvDNa~VialI~~~f~lP~~~q~raL~~GI~gAiv-lRiifi~~g~~Ll~~f--~~I~liGG~ 217 (355)
..+.-+....+++.+. .|++.|.++.-+-.....+ ...+...++.++.+.+ .+..++.++
T Consensus 359 ~~~~~~~~~~~~~~~~--~~~~~~g~~~~~~~~~~~~~g~~~~~~~~g~l~~~~g~~~~~~~~~~ 421 (451)
T 1pw4_A 359 LIYGPVMLIGLHALEL--APKKAAGTAAGFTGLFGYLGGSVAASAIVGYTVDFFGWDGGFMVMIG 421 (451)
T ss_dssp HHTHHHHHHHHHHHHT--SCTTHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHSSCSHHHHHHHHH
T ss_pred HHhchHHHHHHHHHHH--hchhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHhcCcHHHHHHHHH
Confidence 3444455555566665 6776665554443333345 7777777877777653 334444333
No 5
>3o7q_A L-fucose-proton symporter; transporter, multi-PASS membrane protei transport protein; HET: BNG; 3.14A {Escherichia coli} PDB: 3o7p_A*
Probab=12.42 E-value=7.5e+02 Score=22.10 Aligned_cols=53 Identities=11% Similarity=-0.062 Sum_probs=33.6
Q ss_pred HHHHHhchhHHHHHHHHhCcCCCCHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Q 018460 152 ILEQSLSVDNLFVFVLIFKYFKVPVMYQNRVLSYGIAGAIVFRLSLILLGTATLQRF 208 (355)
Q Consensus 152 lLE~sLSvDNa~VialI~~~f~lP~~~q~raL~~GI~gAivlRiifi~~g~~Ll~~f 208 (355)
++-...+.=+....+.+.+. .|++ +..+.-+.. .+.+...+...+..++.+.+
T Consensus 356 ~~g~~~~~~~~~~~~~~~~~--~~~~-~~~~~~~~~-~~~~g~~~~~~~~g~l~~~~ 408 (438)
T 3o7q_A 356 LCSAFMSIQYPTIFSLGIKN--LGQD-TKYGSSFIV-MTIIGGGIVTPVMGFVSDAA 408 (438)
T ss_dssp HHHHHHTTHHHHHHHHHHSS--CGGG-HHHHHHHHH-HTTHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHhh--cccc-ccchhhHHH-HHHHHHHHHHHHHHHHHHHh
Confidence 33344454555667776775 6755 667666666 44567777777777777653
No 6
>2esy_A LUNG surfactant protein C; lipid binding protein; NMR {Synthetic}
Probab=12.37 E-value=88 Score=20.48 Aligned_cols=11 Identities=36% Similarity=0.501 Sum_probs=8.6
Q ss_pred cCCCCCCCCCc
Q 018460 25 SPTSTSQVPKL 35 (355)
Q Consensus 25 ~~~~~~~~~~~ 35 (355)
+||+|++.|..
T Consensus 1 sPPdYSa~P~g 11 (32)
T 2esy_A 1 SPPDYSAAPRG 11 (32)
T ss_dssp CCCCCCSCCCS
T ss_pred CCCccccCcCc
Confidence 58899987765
No 7
>4aps_A DI-OR tripeptide H+ symporter; transport protein, peptide transport, major facilitator SUPE transporter, MFS; 3.30A {Streptococcus thermophilus}
Probab=12.19 E-value=8.2e+02 Score=22.43 Aligned_cols=61 Identities=11% Similarity=-0.093 Sum_probs=37.7
Q ss_pred HHHHHHHHHhchhHHHHHHHHhCcCCCCHHhHHHHHHHHH--HHHHHHHHHHHHHHHHHHHhhhH
Q 018460 148 FAGYILEQSLSVDNLFVFVLIFKYFKVPVMYQNRVLSYGI--AGAIVFRLSLILLGTATLQRFEA 210 (355)
Q Consensus 148 ltl~lLE~sLSvDNa~VialI~~~f~lP~~~q~raL~~GI--~gAivlRiifi~~g~~Ll~~f~~ 210 (355)
....+.-...+..+....+++.+. .|+++|+|....|+ .+.-+.-++-..++.++.+.+.|
T Consensus 113 ~~~~l~g~~~~~~~~~~~~~~~~~--~~~~~~~r~~~~~~~~~~~~~g~~~~~~~~~~l~~~~g~ 175 (491)
T 4aps_A 113 GSIILIIIGTGFLKPNVSTLVGTL--YDEHDRRRDAGFSIFVFGINLGAFIAPLIVGAAQEAAGY 175 (491)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHH--SSSCTTHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHSCH
T ss_pred HHHHHHHHHHHhccchHHHHHHHH--cCcccccceeeehHHHHHHHHHHHHHHHHHHHHHhhhhH
Confidence 333444445566677777777776 57777777666665 33335556667777777765443
No 8
>2xut_A Proton/peptide symporter family protein; transport protein, membrane protein, major facilitator super transporter; 3.62A {Shewanella oneidensis}
Probab=11.31 E-value=9e+02 Score=22.42 Aligned_cols=70 Identities=6% Similarity=-0.082 Sum_probs=36.1
Q ss_pred HHHHHHHHHHhchhHHHHHHHHhCcCCCCHHhHHHHH-HHHHHHH--HHHHHHHHHHHHHHHHhh--hHHHHHHHHH
Q 018460 147 FFAGYILEQSLSVDNLFVFVLIFKYFKVPVMYQNRVL-SYGIAGA--IVFRLSLILLGTATLQRF--EAVNLVLAGI 218 (355)
Q Consensus 147 fltl~lLE~sLSvDNa~VialI~~~f~lP~~~q~raL-~~GI~gA--ivlRiifi~~g~~Ll~~f--~~I~liGG~f 218 (355)
++...+.=...+.-+....+++.+. .|+++|.++. .+|+..+ -+--++...++.++.+.+ .+..++.++.
T Consensus 113 ~~~~~l~g~~~~~~~~~~~~~~~~~--~~~~~r~~~~~~~~~~~~~~~~g~~~g~~~~~~l~~~~g~~~~f~~~~~~ 187 (524)
T 2xut_A 113 YTGLFLIALGSGGIKPLVSSFMGDQ--FDQSNKSLAQKAFDMFYFTINFGSFFASLSMPLLLKNFGAAVAFGIPGVL 187 (524)
T ss_dssp HHHHHHHHHHHHTTHHHHHHHHHHT--CSTTTTTHHHHHHHHHHHHHHHHHHHHHHTSTHHHHTSCHHHHHHHHHHH
T ss_pred HHHHHHHHHhccccchhHHHHHHHH--cCccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccccHHHHHHHHHHH
Confidence 3334444455566777778888886 5777765432 2222221 123344445555565543 3444444443
No 9
>2vv5_A MSCS, small-conductance mechanosensitive channel; ION transport, transmembrane, inner membrane, membrane struc membrane protein, membrane; 3.45A {Escherichia coli} SCOP: b.38.1.3 d.58.43.1 f.34.1.1 PDB: 2oau_A
Probab=6.41 E-value=1.2e+03 Score=21.03 Aligned_cols=43 Identities=9% Similarity=0.026 Sum_probs=20.9
Q ss_pred HHHHHHHHHHHHHHHHHhh-------hcHHHHHHHHHHHHHHHHhhhhcC
Q 018460 312 AILGLRSLFTLISEGMADL-------EYLQPSIAVVLGFIGCKMILDYFV 354 (355)
Q Consensus 312 AIl~LRsl~~~l~~ll~rf-------p~L~~~a~~iL~fIGvkMil~~fg 354 (355)
+....|.+...+.+.++|. +.+....-+++.++++-+++..+|
T Consensus 41 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~i~~i~~~~~l~~~g 90 (286)
T 2vv5_A 41 GLIIARMISNAVNRLMISRKIDATVADFLSALVRYGIIAFTLIAALGRVG 90 (286)
T ss_dssp HHHHHHHHHHHHHHHHHHHCSCHHHHHHHHHHHHHHHHHHHHHHHHHTTT
T ss_pred HHHHHHHHHHHHHHHHHhcCCChHHHHHHHHHHHHHHHHHHHHHHHHHhC
Confidence 3334444444444444332 234455555555666655555554
No 10
>3arc_L Photosystem II reaction center protein L; PSII, membrane-protein complex, transmembrane alpha-helix, E transport, photosynthesis; HET: OEX CLA PHO BCR PL9 SQD LMG UNL LMT HTG DGD LHG HEM; 1.90A {Thermosynechococcus vulcanus} PDB: 1s5l_L* 3a0b_L* 3a0h_L* 2axt_L* 3bz1_L* 3bz2_L* 3kzi_L* 3prq_L* 3prr_L*
Probab=6.12 E-value=3.6e+02 Score=18.21 Aligned_cols=20 Identities=25% Similarity=0.345 Sum_probs=14.4
Q ss_pred CCHHhHHHHHHHHHHHHHHH
Q 018460 174 VPVMYQNRVLSYGIAGAIVF 193 (355)
Q Consensus 174 lP~~~q~raL~~GI~gAivl 193 (355)
.|-+.-|--|+||++.-+++
T Consensus 8 q~VELNRTSLy~GLLlifvl 27 (37)
T 3arc_L 8 QPVELNRTSLYLGLLLILVL 27 (37)
T ss_dssp CCBCCCHHHHHHHHHHHHHH
T ss_pred CcceechhhHHHHHHHHHHH
Confidence 46667788899998875443
Done!