Query 018460
Match_columns 355
No_of_seqs 219 out of 1406
Neff 4.6
Searched_HMMs 13730
Date Mon Mar 25 15:37:38 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/018460.a3m -d /work/01045/syshi/HHdatabase/scop70.hhm -o /work/01045/syshi/hhsearch_scop/018460hhsearch_scop -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 d1pw4a_ f.38.1.1 (A:) Glycerol 38.7 1E+02 0.0074 25.5 11.5 54 151-208 351-407 (447)
2 d1pw4a_ f.38.1.1 (A:) Glycerol 36.0 1.1E+02 0.0081 25.2 18.8 33 150-184 123-155 (447)
3 d1pv7a_ f.38.1.2 (A:) Lactose 31.8 1.2E+02 0.0084 24.1 13.0 80 141-222 310-392 (417)
4 d2axtl1 f.23.31.1 (L:1-37) Pho 11.0 77 0.0056 19.8 2.4 22 174-195 8-29 (37)
5 d1be3k_ f.23.15.1 (K:) Subunit 7.5 1.4E+02 0.01 17.0 2.3 16 178-193 3-18 (26)
6 d2vv5a3 f.34.1.1 (A:27-112) Me 6.1 3.9E+02 0.029 17.9 7.0 47 309-355 12-65 (86)
7 d1ag7a_ g.3.6.1 (A:) Conotoxin 4.6 1.7E+02 0.013 17.5 1.6 18 56-73 5-26 (34)
8 d3cx5e2 f.23.12.1 (E:31-86) Ir 4.0 3.1E+02 0.022 18.3 2.8 25 329-353 24-48 (56)
9 d1iwga8 f.35.1.1 (A:513-566,A: 3.6 5.6E+02 0.041 20.2 4.9 22 148-169 114-135 (222)
10 d1kf6c_ f.21.2.2 (C:) Fumarate 3.3 5.7E+02 0.041 19.6 4.3 35 114-149 27-61 (130)
No 1
>d1pw4a_ f.38.1.1 (A:) Glycerol-3-phosphate transporter {Escherichia coli [TaxId: 562]}
Probab=38.67 E-value=1e+02 Score=25.52 Aligned_cols=54 Identities=9% Similarity=0.078 Sum_probs=27.0
Q ss_pred HHHHHHhchhHHHHHHHHhCcCCCCHHhHHHHHHHHHHHH---HHHHHHHHHHHHHHHHhh
Q 018460 151 YILEQSLSVDNLFVFVLIFKYFKVPVMYQNRVLSYGIAGA---IVFRLSLILLGTATLQRF 208 (355)
Q Consensus 151 ~lLE~sLSvDNa~VialI~~~f~lP~~~q~raL~~GI~gA---ivlRiifi~~g~~Ll~~f 208 (355)
.++-...+.-+......+.+. .|++.|.++. |+... +.--++...+..++.+.+
T Consensus 351 ~~~g~~~~~~~~~~~~~~~~~--~p~~~~g~~~--g~~~~~~~~~g~~~~~~~~g~~~~~~ 407 (447)
T d1pw4a_ 351 IVIGFLIYGPVMLIGLHALEL--APKKAAGTAA--GFTGLFGYLGGSVAASAIVGYTVDFF 407 (447)
T ss_dssp HHHHHHHTHHHHHHHHHHHHT--SCTTHHHHHH--HHHHHHHHHHHHHHHHHHHHHHHHSS
T ss_pred HHHHHHHHHHHHHHHHHHHHH--cCHHHHHHHH--HHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 333344445555555666654 5777665543 43322 222333455555666554
No 2
>d1pw4a_ f.38.1.1 (A:) Glycerol-3-phosphate transporter {Escherichia coli [TaxId: 562]}
Probab=36.02 E-value=1.1e+02 Score=25.23 Aligned_cols=33 Identities=3% Similarity=-0.143 Sum_probs=21.2
Q ss_pred HHHHHHHhchhHHHHHHHHhCcCCCCHHhHHHHHH
Q 018460 150 GYILEQSLSVDNLFVFVLIFKYFKVPVMYQNRVLS 184 (355)
Q Consensus 150 l~lLE~sLSvDNa~VialI~~~f~lP~~~q~raL~ 184 (355)
..+.-...+.-.....+++.+. .|+++|.++.-
T Consensus 123 ~~~~g~~~~~~~~~~~~~i~~~--~~~~~r~~~~~ 155 (447)
T d1pw4a_ 123 LFLCGWFQGMGWPPCGRTMVHW--WSQKERGGIVS 155 (447)
T ss_dssp HHHHHHHHHHTHHHHHHHHHTT--CTTTHHHHHHH
T ss_pred HHHHHHhhhhhhhHHHHHHHHH--HHhhccccccc
Confidence 3444444456666777788887 68887776653
No 3
>d1pv7a_ f.38.1.2 (A:) Lactose permease {Escherichia coli [TaxId: 562]}
Probab=31.77 E-value=1.2e+02 Score=24.14 Aligned_cols=80 Identities=11% Similarity=-0.016 Sum_probs=45.1
Q ss_pred hhhHHHHHHHHHHHHHhchhHHHHHHHHhCcCCCCHHhHHHHHHHHHHHHH-HHHHHHHHHHHHHHHhhh--HHHHHHHH
Q 018460 141 ASKASEFFAGYILEQSLSVDNLFVFVLIFKYFKVPVMYQNRVLSYGIAGAI-VFRLSLILLGTATLQRFE--AVNLVLAG 217 (355)
Q Consensus 141 ~~~a~~fltl~lLE~sLSvDNa~VialI~~~f~lP~~~q~raL~~GI~gAi-vlRiifi~~g~~Ll~~f~--~I~liGG~ 217 (355)
+..+.-+....+.-...+.-+....+.+.+. .|++.|.++.-.....+. +...+...++.++.+.+. +..++.|+
T Consensus 310 ~~~~~~~~~~~l~g~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~g~~i~~~~~G~l~~~~g~~~~~~~~~~ 387 (417)
T d1pv7a_ 310 TSALEVVILKTLHMFEVPFLLVGCFKYITSQ--FEVRFSATIYLVCFCFFKQLAMIFMSVLAGNMYESIGFQGAYLVLGL 387 (417)
T ss_dssp CCHHHHHHHHHHHHHHHHHHHHHHHHHHHHH--SCGGGHHHHHHHHHTTTHHHHHHHHHHHHHHHHHHHCHHHHHHHHHH
T ss_pred cccchhhHHHHHHHHHHHHHHHHHHHHHHHH--CCHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCHHHHHHHHHH
Confidence 3344334444455556666777777777776 788877665433222222 445666777777776643 44455554
Q ss_pred HHHHH
Q 018460 218 ILLFS 222 (355)
Q Consensus 218 fLl~~ 222 (355)
+.+..
T Consensus 388 ~~~~~ 392 (417)
T d1pv7a_ 388 VALGF 392 (417)
T ss_dssp HHHHH
T ss_pred HHHHH
Confidence 44333
No 4
>d2axtl1 f.23.31.1 (L:1-37) Photosystem II reaction center protein L, PsbL {Thermosynechococcus elongatus [TaxId: 146786]}
Probab=11.03 E-value=77 Score=19.77 Aligned_cols=22 Identities=27% Similarity=0.365 Sum_probs=16.0
Q ss_pred CCHHhHHHHHHHHHHHHHHHHH
Q 018460 174 VPVMYQNRVLSYGIAGAIVFRL 195 (355)
Q Consensus 174 lP~~~q~raL~~GI~gAivlRi 195 (355)
.|-+.-|.-|+||++.-.++-+
T Consensus 8 q~veLNrtsLy~GlLlifvl~v 29 (37)
T d2axtl1 8 QPVELNRTSLYLGLLLILVLAL 29 (37)
T ss_dssp CCBCCCHHHHHHHHHHHHHHHH
T ss_pred CccccchhhHHHHHHHHHHHHH
Confidence 5667778899999987554433
No 5
>d1be3k_ f.23.15.1 (K:) Subunit XI (6.4 kDa protein) of cytochrome bc1 complex (Ubiquinol-cytochrome c reductase) {Cow (Bos taurus) [TaxId: 9913]}
Probab=7.46 E-value=1.4e+02 Score=16.99 Aligned_cols=16 Identities=19% Similarity=0.391 Sum_probs=11.7
Q ss_pred hHHHHHHHHHHHHHHH
Q 018460 178 YQNRVLSYGIAGAIVF 193 (355)
Q Consensus 178 ~q~raL~~GI~gAivl 193 (355)
|-+.+-+||-.||+.+
T Consensus 3 wvptaqlwgavgavgl 18 (26)
T d1be3k_ 3 WVPTAQLWGAVGAVGL 18 (26)
T ss_dssp HHHHHHHHHHHHHHHH
T ss_pred cchHHHHHhhhcceeE
Confidence 4456678999998754
No 6
>d2vv5a3 f.34.1.1 (A:27-112) Mechanosensitive channel protein MscS (YggB), transmembrane region {Escherichia coli [TaxId: 562]}
Probab=6.05 E-value=3.9e+02 Score=17.87 Aligned_cols=47 Identities=9% Similarity=0.037 Sum_probs=31.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHhh-------hcHHHHHHHHHHHHHHHHhhhhcCC
Q 018460 309 NLFAILGLRSLFTLISEGMADL-------EYLQPSIAVVLGFIGCKMILDYFVL 355 (355)
Q Consensus 309 ~i~AIl~LRsl~~~l~~ll~rf-------p~L~~~a~~iL~fIGvkMil~~fg~ 355 (355)
..++....|.....+.+.++|. +.+....-..+..+|+-+.++.+|+
T Consensus 12 l~i~~~i~~~i~~~~~~~~~~~~~~~~~~~~i~~~~~~~i~~i~~~~~L~~~Gi 65 (86)
T d2vv5a3 12 IIVGLIIARMISNAVNRLMISRKIDATVADFLSALVRYGIIAFTLIAALGRVGV 65 (86)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHCSCHHHHHHHHHHHHHHHHHHHHHHHHHTTTC
T ss_pred HHHHHHHHHHHHHHHHHHHHhcCCChHHHHHHHHHHHHHHHHHHHHHHHHHhCC
Confidence 3445556666666677766653 2355566777888888888887774
No 7
>d1ag7a_ g.3.6.1 (A:) Conotoxin {Synthetic, based on Conus geographus, GS}
Probab=4.58 E-value=1.7e+02 Score=17.46 Aligned_cols=18 Identities=33% Similarity=0.691 Sum_probs=11.3
Q ss_pred cCCCCCc----ccccccCCCcc
Q 018460 56 RRGQYSP----LLACAKGTEQE 73 (355)
Q Consensus 56 ~~~~~~~----~~~~~~~~~~~ 73 (355)
|.++++| =++|.||..|.
T Consensus 5 rgsrcppqccmglrcgrgnpqk 26 (34)
T d1ag7a_ 5 RGSRCPPQCCMGLRCGRGNPQK 26 (34)
T ss_dssp TTSCSSSCBCTTEEEECSSSCE
T ss_pred CCCCCChhhceeeeccCCCchh
Confidence 4555555 36788887763
No 8
>d3cx5e2 f.23.12.1 (E:31-86) Iron-sulfur subunit (ISP) of cytochrome bc1 complex (Ubiquinol-cytochrome c reductase), transmembrane region {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}
Probab=3.99 E-value=3.1e+02 Score=18.33 Aligned_cols=25 Identities=20% Similarity=0.316 Sum_probs=17.2
Q ss_pred hhhcHHHHHHHHHHHHHHHHhhhhc
Q 018460 329 DLEYLQPSIAVVLGFIGCKMILDYF 353 (355)
Q Consensus 329 rfp~L~~~a~~iL~fIGvkMil~~f 353 (355)
-|.|+-.|...++.-.|.|-.+++|
T Consensus 24 ~fsY~mvGs~g~~~a~~AKstV~~F 48 (56)
T d3cx5e2 24 SYAYFMVGAMGLLSSAGAKSTVETF 48 (56)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred eEEEEeeehhHHHHHHHHHHHHHHH
Confidence 3667777777777777777666554
No 9
>d1iwga8 f.35.1.1 (A:513-566,A:869-1036) Multidrug efflux transporter AcrB transmembrane domain {Escherichia coli [TaxId: 562]}
Probab=3.61 E-value=5.6e+02 Score=20.17 Aligned_cols=22 Identities=23% Similarity=0.252 Sum_probs=13.4
Q ss_pred HHHHHHHHHhchhHHHHHHHHh
Q 018460 148 FAGYILEQSLSVDNLFVFVLIF 169 (355)
Q Consensus 148 ltl~lLE~sLSvDNa~VialI~ 169 (355)
..+.++=.-+.+||.+++.--.
T Consensus 114 ~~g~i~l~Gi~v~~~i~~~~~~ 135 (222)
T d1iwga8 114 QVGLLTTIGLSAKNAILIVEFA 135 (222)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHH
T ss_pred cccccchhhhhhhHHHHHHHHh
Confidence 4455555666777777766543
No 10
>d1kf6c_ f.21.2.2 (C:) Fumarate reductase subunit FrdC {Escherichia coli [TaxId: 562]}
Probab=3.29 E-value=5.7e+02 Score=19.61 Aligned_cols=35 Identities=20% Similarity=0.248 Sum_probs=25.1
Q ss_pred hhhHHHHHHHHHHHHHHHHHHHHHHhChhhHHHHHH
Q 018460 114 YTSSVKTVAFCVSTAVAFGLGVGFIEGASKASEFFA 149 (355)
Q Consensus 114 ~k~a~~~s~~wv~lal~F~~~i~~~~g~~~a~~flt 149 (355)
.+|+-.-...|.++-+++|++. ...|+++|..|+.
T Consensus 27 lRE~T~v~~~~f~lvLl~Gl~~-L~~g~~aw~~fv~ 61 (130)
T d1kf6c_ 27 LREGTAVPAVWFSIELIFGLFA-LKNGPEAWAGFVD 61 (130)
T ss_dssp HHHHTHHHHHHHHHHHHHHHHH-HHTHHHHHHHHHH
T ss_pred HHHHhHHHHHHHHHHHHHHHHH-HhcCHHHHHHHHH
Confidence 3666666789999999999765 3357777765543
Done!