BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 018462
(355 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|1QDM|A Chain A, Crystal Structure Of Prophytepsin, A Zymogen Of A Barley
Vacuolar Aspartic Proteinase.
pdb|1QDM|B Chain B, Crystal Structure Of Prophytepsin, A Zymogen Of A Barley
Vacuolar Aspartic Proteinase.
pdb|1QDM|C Chain C, Crystal Structure Of Prophytepsin, A Zymogen Of A Barley
Vacuolar Aspartic Proteinase
Length = 478
Score = 368 bits (944), Expect = e-102, Method: Compositional matrix adjust.
Identities = 173/325 (53%), Positives = 235/325 (72%), Gaps = 6/325 (1%)
Query: 33 LRIQLKKRQLGINTINAARLITKNE------VHNRFNHPKADVVYLNNYLDAQYYGEIGI 86
+RI LKKR + N+ A L E + + + D+V L NY++AQY+GEIG+
Sbjct: 1 VRIALKKRPIDRNSRVATGLSGGEEQPLLSGANPLRSEEEGDIVALKNYMNAQYFGEIGV 60
Query: 87 GSPPQSFSVVFDTGSSNLWVPSSKCLFSISCYLHSRYRARLSRTYTKIGVPCKIHYGSGQ 146
G+PPQ F+V+FDTGSSNLWVPS+KC FSI+CYLHSRY+A S TY K G P I YG+G
Sbjct: 61 GTPPQKFTVIFDTGSSNLWVPSAKCYFSIACYLHSRYKAGASSTYKKNGKPAAIQYGTGS 120
Query: 147 ISGFFSQDNVKIGDMIIKDQEFVEVTKEGLLPFLALQFDGILGLGFRDIAAGNATPLWYN 206
I+G+FS+D+V +GD+++KDQEF+E TKE + FL +FDGILGLGF++I+ G A P+WY
Sbjct: 121 IAGYFSEDSVTVGDLVVKDQEFIEATKEPGITFLVAKFDGILGLGFKEISVGKAVPVWYK 180
Query: 207 MVRQGHISQKIFSLWLNQDPNSEVGGEIIFGGFDWRHFRGSHIYVPITEKGYWQIKVGDI 266
M+ QG +S +FS WLN+ + GGEIIFGG D +H+ G H YVP+T+KGYWQ +GD+
Sbjct: 181 MIEQGLVSDPVFSFWLNRHVDEGEGGEIIFGGMDPKHYVGEHTYVPVTQKGYWQFDMGDV 240
Query: 267 LIENSSTGFCEDGCTAILDSGTSVLAGPTTVVAQINHAIGAEGIVSMQCKTVVFEYGNMI 326
L+ STGFC GC AI DSGTS+LAGPT ++ +IN IGA G+VS +CKT+V +YG I
Sbjct: 241 LVGGKSTGFCAGGCAAIADSGTSLLAGPTAIITEINEKIGAAGVVSQECKTIVSQYGQQI 300
Query: 327 WEFLISGVQPETVCSDIGLCVYNGS 351
+ L++ QP+ +CS +GLC ++G+
Sbjct: 301 LDLLLAETQPKKICSQVGLCTFDGT 325
>pdb|1B5F|A Chain A, Native Cardosin A From Cynara Cardunculus L.
pdb|1B5F|C Chain C, Native Cardosin A From Cynara Cardunculus L
Length = 239
Score = 282 bits (721), Expect = 2e-76, Method: Compositional matrix adjust.
Identities = 134/239 (56%), Positives = 171/239 (71%), Gaps = 4/239 (1%)
Query: 69 VVYLNNYLDAQYYGEIGIGSPPQSFSVVFDTGSSNLWVPSSKCLFSISCYLHSRYRARLS 128
VV L N D Y+GEIGIG+PPQ F+V+FDTGSS LWVPSSKC+ S +C HS Y + S
Sbjct: 4 VVALTNDRDTSYFGEIGIGTPPQKFTVIFDTGSSVLWVPSSKCINSKACRAHSMYESSDS 63
Query: 129 RTYTKIGVPCKIHYGSGQISGFFSQDNVKIGDMIIKDQEFVEVTKEGLLPFLALQFDGIL 188
TY + G I YG+G I+GFFSQD+V IGD+++K+Q+F+E T E FL FDGIL
Sbjct: 64 STYKENGTFGAIIYGTGSITGFFSQDSVTIGDLVVKEQDFIEATDEADNVFLHRLFDGIL 123
Query: 189 GLGFRDIAAGNATPLWYNMVRQGHISQKIFSLWLNQDPNSEVGGEIIFGGFDWRHFRGSH 248
GL F+ I+ P+WYNM+ QG + ++ FS WLN++ + E GGE++FGG D HFRG H
Sbjct: 124 GLSFQTISV----PVWYNMLNQGLVKERRFSFWLNRNVDEEEGGELVFGGLDPNHFRGDH 179
Query: 249 IYVPITEKGYWQIKVGDILIENSSTGFCEDGCTAILDSGTSVLAGPTTVVAQINHAIGA 307
YVP+T + YWQ +GD+LI + STGFC GC A DSGTS+L+GPT +V QINHAIGA
Sbjct: 180 TYVPVTYQYYWQFGIGDVLIGDKSTGFCAPGCQAFADSGTSLLSGPTAIVTQINHAIGA 238
>pdb|1SMR|A Chain A, The 3-D Structure Of Mouse Submaxillary Renin Complexed
With A Decapeptide Inhibitor Ch-66 Based On The 4-16
Fragment Of Rat Angiotensinogen
pdb|1SMR|C Chain C, The 3-D Structure Of Mouse Submaxillary Renin Complexed
With A Decapeptide Inhibitor Ch-66 Based On The 4-16
Fragment Of Rat Angiotensinogen
pdb|1SMR|E Chain E, The 3-D Structure Of Mouse Submaxillary Renin Complexed
With A Decapeptide Inhibitor Ch-66 Based On The 4-16
Fragment Of Rat Angiotensinogen
pdb|1SMR|G Chain G, The 3-D Structure Of Mouse Submaxillary Renin Complexed
With A Decapeptide Inhibitor Ch-66 Based On The 4-16
Fragment Of Rat Angiotensinogen
Length = 335
Score = 220 bits (560), Expect = 1e-57, Method: Compositional matrix adjust.
Identities = 108/240 (45%), Positives = 167/240 (69%), Gaps = 4/240 (1%)
Query: 70 VYLNNYLDAQYYGEIGIGSPPQSFSVVFDTGSSNLWVPSSKC-LFSISCYLHSRYRARLS 128
V L NYL++QYYGEIGIG+PPQ+F V+FDTGS+NLWVPS+KC ++C +HS Y + S
Sbjct: 7 VVLTNYLNSQYYGEIGIGTPPQTFKVIFDTGSANLWVPSTKCSRLYLACGIHSLYESSDS 66
Query: 129 RTYTKIGVPCKIHYGSGQISGFFSQDNVKIGDMIIKDQEFVEVTKEGLLPFLALQFDGIL 188
+Y + G IHYGSG++ GF SQD+V +G + + Q F EVT+ L+PF+ QFDG+L
Sbjct: 67 SSYMENGDDFTIHYGSGRVKGFLSQDSVTVGGITVT-QTFGEVTQLPLIPFMLAQFDGVL 125
Query: 189 GLGFRDIAAGNATPLWYNMVRQGHISQKIFSLWLNQDPNSEVGGEIIFGGFDWRHFRGSH 248
G+GF A G TP++ +++ QG + +K+FS++ N+ P+ +GGE++ GG D +H++G
Sbjct: 126 GMGFPAQAVGGVTPVFDHILSQGVLKEKVFSVYYNRGPH-LLGGEVVLGGSDPQHYQGDF 184
Query: 249 IYVPITEKGYWQIKVGDILIENSSTGFCEDGCTAILDSGTSVLAGPTTVVAQINHAIGAE 308
YV +++ WQI + + + SST CE+GC ++D+G+S ++ PT+ + I A+GA+
Sbjct: 185 HYVSLSKTDSWQITMKGVSV-GSSTLLCEEGCEVVVDTGSSFISAPTSSLKLIMQALGAK 243
>pdb|1TZS|A Chain A, Crystal Structure Of An Activation Intermediate Of
Cathepsin E
Length = 351
Score = 218 bits (556), Expect = 3e-57, Method: Compositional matrix adjust.
Identities = 107/250 (42%), Positives = 161/250 (64%), Gaps = 5/250 (2%)
Query: 72 LNNYLDAQYYGEIGIGSPPQSFSVVFDTGSSNLWVPSSKCLFSISCYLHSRYRARLSRTY 131
L NYLD +Y+G I IGSPPQ+F+V+FDTGSSNLWVPS C S +C HSR++ S TY
Sbjct: 17 LINYLDMEYFGTISIGSPPQNFTVIFDTGSSNLWVPSVYCT-SPACKTHSRFQPSQSSTY 75
Query: 132 TKIGVPCKIHYGSGQISGFFSQDNVKIGDMIIKDQEFVEVTKEGLLPFLALQFDGILGLG 191
++ G I YG+G +SG D V + + + Q+F E E F+ +FDGILGLG
Sbjct: 76 SQPGQSFSIQYGTGSLSGIIGADQVSVEGLTVVGQQFGESVTEPGQTFVDAEFDGILGLG 135
Query: 192 FRDIAAGNATPLWYNMVRQGHISQKIFSLWLNQDPNSEVGGEIIFGGFDWRHFRGSHIYV 251
+ +A G TP++ NM+ Q + +FS++++ +P G E+IFGG+D HF GS +V
Sbjct: 136 YPSLAVGGVTPVFDNMMAQNLVDLPMFSVYMSSNPEGGAGSELIFGGYDHSHFSGSLNWV 195
Query: 252 PITEKGYWQIKVGDILIENSSTGFCEDGCTAILDSGTSVLAGPTTVVAQINHAIGA---E 308
P+T++ YWQI + +I + + FC +GC AI+D+GTS++ GP+ + Q+ +AIGA +
Sbjct: 196 PVTKQAYWQIALDNIQV-GGTVMFCSEGCQAIVDTGTSLITGPSDKIKQLQNAIGAAPVD 254
Query: 309 GIVSMQCKTV 318
G +++C +
Sbjct: 255 GEYAVECANL 264
>pdb|2I4Q|A Chain A, Human ReninPF02342674 COMPLEX
pdb|2I4Q|B Chain B, Human ReninPF02342674 COMPLEX
Length = 336
Score = 214 bits (546), Expect = 4e-56, Method: Compositional matrix adjust.
Identities = 106/242 (43%), Positives = 161/242 (66%), Gaps = 5/242 (2%)
Query: 70 VYLNNYLDAQYYGEIGIGSPPQSFSVVFDTGSSNLWVPSSKC-LFSISCYLHSRYRARLS 128
V L NY+D QYYGEIGIG+PPQ+F VVFDTGSSN+WVPSSKC +C H + A S
Sbjct: 6 VILTNYMDTQYYGEIGIGTPPQTFKVVFDTGSSNVWVPSSKCSRLYTACVYHKLFDASDS 65
Query: 129 RTYTKIGVPCKIHYGSGQISGFFSQDNVKIGDMIIKDQEFVEVTKEGLLPFLALQFDGIL 188
+Y G + Y +G +SGF SQD + +G + + Q F EVT+ LPF+ +FDG++
Sbjct: 66 SSYKHNGTELTLRYSTGTVSGFLSQDIITVGGITVT-QMFGEVTEMPALPFMLAEFDGVV 124
Query: 189 GLGFRDIAAGNATPLWYNMVRQGHISQKIFSLWLNQD-PNSE-VGGEIIFGGFDWRHFRG 246
G+GF + A G TP++ N++ QG + + +FS + N+D NS+ +GG+I+ GG D +H+ G
Sbjct: 125 GMGFIEQAIGRVTPIFDNIISQGVLKEDVFSFYYNRDSENSQSLGGQIVLGGSDPQHYEG 184
Query: 247 SHIYVPITEKGYWQIKVGDILIENSSTGFCEDGCTAILDSGTSVLAGPTTVVAQINHAIG 306
+ Y+ + + G WQI++ + + SST CEDGC A++D+G S ++G T+ + ++ A+G
Sbjct: 185 NFHYINLIKTGVWQIQMKGVSV-GSSTLLCEDGCLALVDTGASYISGSTSSIEKLMEALG 243
Query: 307 AE 308
A+
Sbjct: 244 AK 245
>pdb|2X0B|A Chain A, Crystal Structure Of Human Angiotensinogen Complexed With
Renin
pdb|2X0B|C Chain C, Crystal Structure Of Human Angiotensinogen Complexed With
Renin
pdb|2X0B|E Chain E, Crystal Structure Of Human Angiotensinogen Complexed With
Renin
pdb|2X0B|G Chain G, Crystal Structure Of Human Angiotensinogen Complexed With
Renin
Length = 383
Score = 214 bits (546), Expect = 5e-56, Method: Compositional matrix adjust.
Identities = 106/242 (43%), Positives = 161/242 (66%), Gaps = 5/242 (2%)
Query: 70 VYLNNYLDAQYYGEIGIGSPPQSFSVVFDTGSSNLWVPSSKC-LFSISCYLHSRYRARLS 128
V L NY+D QYYGEIGIG+PPQ+F VVFDTGSSN+WVPSSKC +C H + A S
Sbjct: 53 VILTNYMDTQYYGEIGIGTPPQTFKVVFDTGSSNVWVPSSKCSRLYTACVYHKLFDASDS 112
Query: 129 RTYTKIGVPCKIHYGSGQISGFFSQDNVKIGDMIIKDQEFVEVTKEGLLPFLALQFDGIL 188
+Y G + Y +G +SGF SQD + +G + + Q F EVT+ LPF+ +FDG++
Sbjct: 113 SSYKHNGTELTLRYSTGTVSGFLSQDIITVGGITVT-QMFGEVTEMPALPFMLAEFDGVV 171
Query: 189 GLGFRDIAAGNATPLWYNMVRQGHISQKIFSLWLNQD-PNSE-VGGEIIFGGFDWRHFRG 246
G+GF + A G TP++ N++ QG + + +FS + N+D NS+ +GG+I+ GG D +H+ G
Sbjct: 172 GMGFIEQAIGRVTPIFDNIISQGVLKEDVFSFYYNRDSENSQSLGGQIVLGGSDPQHYEG 231
Query: 247 SHIYVPITEKGYWQIKVGDILIENSSTGFCEDGCTAILDSGTSVLAGPTTVVAQINHAIG 306
+ Y+ + + G WQI++ + + SST CEDGC A++D+G S ++G T+ + ++ A+G
Sbjct: 232 NFHYINLIKTGVWQIQMKGVSV-GSSTLLCEDGCLALVDTGASYISGSTSSIEKLMEALG 290
Query: 307 AE 308
A+
Sbjct: 291 AK 292
>pdb|1HRN|A Chain A, High Resolution Crystal Structures Of Recombinant Human
Renin In Complex With Polyhydroxymonoamide Inhibitors
pdb|1HRN|B Chain B, High Resolution Crystal Structures Of Recombinant Human
Renin In Complex With Polyhydroxymonoamide Inhibitors
pdb|1BIM|A Chain A, Crystallographic Studies On The Binding Modes Of P2-P3
Butanediamide Renin Inhibitors
pdb|1BIM|B Chain B, Crystallographic Studies On The Binding Modes Of P2-P3
Butanediamide Renin Inhibitors
pdb|1BIL|A Chain A, Crystallographic Studies On The Binding Modes Of P2-P3
Butanediamide Renin Inhibitors
pdb|1BIL|B Chain B, Crystallographic Studies On The Binding Modes Of P2-P3
Butanediamide Renin Inhibitors
pdb|3GW5|A Chain A, Crystal Structure Of Human Renin Complexed With A Novel
Inhibitor
pdb|3GW5|B Chain B, Crystal Structure Of Human Renin Complexed With A Novel
Inhibitor
pdb|3KM4|A Chain A, Optimization Of Orally Bioavailable Alkyl Amine Renin
Inhibitors
pdb|3KM4|B Chain B, Optimization Of Orally Bioavailable Alkyl Amine Renin
Inhibitors
Length = 337
Score = 214 bits (546), Expect = 5e-56, Method: Compositional matrix adjust.
Identities = 106/242 (43%), Positives = 161/242 (66%), Gaps = 5/242 (2%)
Query: 70 VYLNNYLDAQYYGEIGIGSPPQSFSVVFDTGSSNLWVPSSKC-LFSISCYLHSRYRARLS 128
V L NY+D QYYGEIGIG+PPQ+F VVFDTGSSN+WVPSSKC +C H + A S
Sbjct: 7 VILTNYMDTQYYGEIGIGTPPQTFKVVFDTGSSNVWVPSSKCSRLYTACVYHKLFDASDS 66
Query: 129 RTYTKIGVPCKIHYGSGQISGFFSQDNVKIGDMIIKDQEFVEVTKEGLLPFLALQFDGIL 188
+Y G + Y +G +SGF SQD + +G + + Q F EVT+ LPF+ +FDG++
Sbjct: 67 SSYKHNGTELTLRYSTGTVSGFLSQDIITVGGITVT-QMFGEVTEMPALPFMLAEFDGVV 125
Query: 189 GLGFRDIAAGNATPLWYNMVRQGHISQKIFSLWLNQD-PNSE-VGGEIIFGGFDWRHFRG 246
G+GF + A G TP++ N++ QG + + +FS + N+D NS+ +GG+I+ GG D +H+ G
Sbjct: 126 GMGFIEQAIGRVTPIFDNIISQGVLKEDVFSFYYNRDSENSQSLGGQIVLGGSDPQHYEG 185
Query: 247 SHIYVPITEKGYWQIKVGDILIENSSTGFCEDGCTAILDSGTSVLAGPTTVVAQINHAIG 306
+ Y+ + + G WQI++ + + SST CEDGC A++D+G S ++G T+ + ++ A+G
Sbjct: 186 NFHYINLIKTGVWQIQMKGVSV-GSSTLLCEDGCLALVDTGASYISGSTSSIEKLMEALG 244
Query: 307 AE 308
A+
Sbjct: 245 AK 246
>pdb|3D91|A Chain A, Human Renin In Complex With Remikiren
pdb|3D91|B Chain B, Human Renin In Complex With Remikiren
pdb|3G6Z|A Chain A, Design And Preparation Of Potent, Non-Peptidic,
Bioavailable Renin Inhibitors
pdb|3G6Z|B Chain B, Design And Preparation Of Potent, Non-Peptidic,
Bioavailable Renin Inhibitors
pdb|3G70|A Chain A, Design And Preparation Of Potent, Non-Peptidic,
Bioavailable Renin Inhibitors
pdb|3G70|B Chain B, Design And Preparation Of Potent, Non-Peptidic,
Bioavailable Renin Inhibitors
pdb|3K1W|A Chain A, New Classes Of Potent And Bioavailable Human Renin
Inhibitors
pdb|3K1W|B Chain B, New Classes Of Potent And Bioavailable Human Renin
Inhibitors
pdb|3OWN|A Chain A, Potent Macrocyclic Renin Inhibitors
pdb|3OWN|B Chain B, Potent Macrocyclic Renin Inhibitors
Length = 341
Score = 214 bits (545), Expect = 5e-56, Method: Compositional matrix adjust.
Identities = 106/242 (43%), Positives = 161/242 (66%), Gaps = 5/242 (2%)
Query: 70 VYLNNYLDAQYYGEIGIGSPPQSFSVVFDTGSSNLWVPSSKC-LFSISCYLHSRYRARLS 128
V L NY+D QYYGEIGIG+PPQ+F VVFDTGSSN+WVPSSKC +C H + A S
Sbjct: 10 VILTNYMDTQYYGEIGIGTPPQTFKVVFDTGSSNVWVPSSKCSRLYTACVYHKLFDASDS 69
Query: 129 RTYTKIGVPCKIHYGSGQISGFFSQDNVKIGDMIIKDQEFVEVTKEGLLPFLALQFDGIL 188
+Y G + Y +G +SGF SQD + +G + + Q F EVT+ LPF+ +FDG++
Sbjct: 70 SSYKHNGTELTLRYSTGTVSGFLSQDIITVGGITVT-QMFGEVTEMPALPFMLAEFDGVV 128
Query: 189 GLGFRDIAAGNATPLWYNMVRQGHISQKIFSLWLNQD-PNSE-VGGEIIFGGFDWRHFRG 246
G+GF + A G TP++ N++ QG + + +FS + N+D NS+ +GG+I+ GG D +H+ G
Sbjct: 129 GMGFIEQAIGRVTPIFDNIISQGVLKEDVFSFYYNRDSENSQSLGGQIVLGGSDPQHYEG 188
Query: 247 SHIYVPITEKGYWQIKVGDILIENSSTGFCEDGCTAILDSGTSVLAGPTTVVAQINHAIG 306
+ Y+ + + G WQI++ + + SST CEDGC A++D+G S ++G T+ + ++ A+G
Sbjct: 189 NFHYINLIKTGVWQIQMKGVSV-GSSTLLCEDGCLALVDTGASYISGSTSSIEKLMEALG 247
Query: 307 AE 308
A+
Sbjct: 248 AK 249
>pdb|2G24|A Chain A, Ketopiperazine-Based Renin Inhibitors: Optimization Of The
"c" Ring
pdb|2G24|B Chain B, Ketopiperazine-Based Renin Inhibitors: Optimization Of The
"c" Ring
pdb|2G26|A Chain A, Ketopiperazine-Based Renin Inhibitors: Optimization Of The
"c" Ring
pdb|2G26|B Chain B, Ketopiperazine-Based Renin Inhibitors: Optimization Of The
"c" Ring
pdb|2G27|A Chain A, Ketopiperazine-Based Renin Inhibitors: Optimization Of The
"c" Ring
pdb|2G27|B Chain B, Ketopiperazine-Based Renin Inhibitors: Optimization Of The
"c" Ring
pdb|2FS4|A Chain A, Ketopiperazine-Based Renin Inhibitors: Optimization Of The
C Ring
pdb|2FS4|B Chain B, Ketopiperazine-Based Renin Inhibitors: Optimization Of The
C Ring
pdb|2G1N|A Chain A, Ketopiperazine-Based Renin Inhibitors: Optimization Of The
"c" Ring
pdb|2G1N|B Chain B, Ketopiperazine-Based Renin Inhibitors: Optimization Of The
"c" Ring
pdb|2G1O|A Chain A, Ketopiperazine-Based Renin Inhibitors: Optimization Of The
"c" Ring
pdb|2G1O|B Chain B, Ketopiperazine-Based Renin Inhibitors: Optimization Of The
"c" Ring
pdb|2G1R|A Chain A, Ketopiperazine-Based Renin Inhibitors: Optimization Of The
C Ring
pdb|2G1R|B Chain B, Ketopiperazine-Based Renin Inhibitors: Optimization Of The
C Ring
pdb|2G1S|A Chain A, Ketopiperazine-Based Renin Inhibitors: Optimization Of The
C Ring
pdb|2G1S|B Chain B, Ketopiperazine-Based Renin Inhibitors: Optimization Of The
C Ring
pdb|2G1Y|A Chain A, Ketopiperazine-Based Renin Inhibitors: Optimization Of The
"c" Ring
pdb|2G1Y|B Chain B, Ketopiperazine-Based Renin Inhibitors: Optimization Of The
"c" Ring
pdb|2G20|A Chain A, Ketopiperazine-Based Renin Inhibitors: Optimization Of The
C Ring
pdb|2G20|B Chain B, Ketopiperazine-Based Renin Inhibitors: Optimization Of The
C Ring
pdb|2G21|A Chain A, Ketopiperazine-Based Renin Inhibitors: Optimization Of The
"c" Ring
pdb|2G21|B Chain B, Ketopiperazine-Based Renin Inhibitors: Optimization Of The
"c" Ring
pdb|2G22|A Chain A, Ketopiperazine-based Renin Inhibitors: Optimization Of The
"c" Ring
pdb|2G22|B Chain B, Ketopiperazine-based Renin Inhibitors: Optimization Of The
"c" Ring
Length = 333
Score = 214 bits (545), Expect = 6e-56, Method: Compositional matrix adjust.
Identities = 106/242 (43%), Positives = 161/242 (66%), Gaps = 5/242 (2%)
Query: 70 VYLNNYLDAQYYGEIGIGSPPQSFSVVFDTGSSNLWVPSSKC-LFSISCYLHSRYRARLS 128
V L NY+D QYYGEIGIG+PPQ+F VVFDTGSSN+WVPSSKC +C H + A S
Sbjct: 3 VILTNYMDTQYYGEIGIGTPPQTFKVVFDTGSSNVWVPSSKCSRLYTACVYHKLFDASDS 62
Query: 129 RTYTKIGVPCKIHYGSGQISGFFSQDNVKIGDMIIKDQEFVEVTKEGLLPFLALQFDGIL 188
+Y G + Y +G +SGF SQD + +G + + Q F EVT+ LPF+ +FDG++
Sbjct: 63 SSYKHNGTELTLRYSTGTVSGFLSQDIITVGGITVT-QMFGEVTEMPALPFMLAEFDGVV 121
Query: 189 GLGFRDIAAGNATPLWYNMVRQGHISQKIFSLWLNQD-PNSE-VGGEIIFGGFDWRHFRG 246
G+GF + A G TP++ N++ QG + + +FS + N+D NS+ +GG+I+ GG D +H+ G
Sbjct: 122 GMGFIEQAIGRVTPIFDNIISQGVLKEDVFSFYYNRDSENSQSLGGQIVLGGSDPQHYEG 181
Query: 247 SHIYVPITEKGYWQIKVGDILIENSSTGFCEDGCTAILDSGTSVLAGPTTVVAQINHAIG 306
+ Y+ + + G WQI++ + + SST CEDGC A++D+G S ++G T+ + ++ A+G
Sbjct: 182 NFHYINLIKTGVWQIQMKGVSV-GSSTLLCEDGCLALVDTGASYISGSTSSIEKLMEALG 240
Query: 307 AE 308
A+
Sbjct: 241 AK 242
>pdb|2BKS|A Chain A, Crystal Structure Of Renin-Pf00074777 Complex
pdb|2BKS|B Chain B, Crystal Structure Of Renin-Pf00074777 Complex
pdb|2BKT|A Chain A, Crystal Structure Of Renin-Pf00257567 Complex
pdb|2BKT|B Chain B, Crystal Structure Of Renin-Pf00257567 Complex
pdb|2IKO|A Chain A, Crystal Structure Of Human Renin Complexed With Inhibitor
pdb|2IKO|B Chain B, Crystal Structure Of Human Renin Complexed With Inhibitor
pdb|2IKU|A Chain A, Crystal Structure Of Human Renin Complexed With Inhibitors
pdb|2IKU|B Chain B, Crystal Structure Of Human Renin Complexed With Inhibitors
pdb|2IL2|A Chain A, Crystal Structure Of Human Renin Complexed With Inhibitor
pdb|2IL2|B Chain B, Crystal Structure Of Human Renin Complexed With Inhibitor
pdb|2V0Z|C Chain C, Crystal Structure Of Renin With Inhibitor 10 (Aliskiren)
pdb|2V0Z|O Chain O, Crystal Structure Of Renin With Inhibitor 10 (Aliskiren)
pdb|2V10|C Chain C, Crystal Structure Of Renin With Inhibitor 9
pdb|2V10|O Chain O, Crystal Structure Of Renin With Inhibitor 9
pdb|2V11|C Chain C, Crystal Structure Of Renin With Inhibitor 6
pdb|2V11|O Chain O, Crystal Structure Of Renin With Inhibitor 6
pdb|2V12|C Chain C, Crystal Structure Of Renin With Inhibitor 8
pdb|2V12|O Chain O, Crystal Structure Of Renin With Inhibitor 8
pdb|1BBS|A Chain A, X-Ray Analyses Of Peptide Inhibitor Complexes Define The
Structural Basis Of Specificity For Human And Mouse
Renins
pdb|1BBS|B Chain B, X-Ray Analyses Of Peptide Inhibitor Complexes Define The
Structural Basis Of Specificity For Human And Mouse
Renins
pdb|1RNE|A Chain A, The Crystal Structure Of Recombinant Glycosylated Human
Renin Alone And In Complex With A Transition State
Analog Inhibitor
pdb|2REN|A Chain A, Structure Of Recombinant Human Renin, A Target For
Cardiovascular- Active Drugs, At 2.5 Angstroms
Resolution
pdb|2V13|A Chain A, Crystal Structure Of Renin With Inhibitor 7
pdb|2V16|C Chain C, Crystal Structure Of Renin With Inhibitor 3
pdb|2V16|O Chain O, Crystal Structure Of Renin With Inhibitor 3
pdb|3G72|A Chain A, Design And Preparation Of Potent, Non-Peptidic,
Bioavailable Renin Inhibitors
pdb|3G72|B Chain B, Design And Preparation Of Potent, Non-Peptidic,
Bioavailable Renin Inhibitors
pdb|3OQF|A Chain A, Crystal Structure Analysis Of Renin-Indole-Piperazine
Inhibitor Complexes
pdb|3OQF|B Chain B, Crystal Structure Analysis Of Renin-Indole-Piperazine
Inhibitor Complexes
pdb|3OOT|A Chain A, Crystal Structure Analysis Of Renin-Indole-Piperazin
Inhibitor Complexes
pdb|3OOT|B Chain B, Crystal Structure Analysis Of Renin-Indole-Piperazin
Inhibitor Complexes
pdb|3OQK|A Chain A, Crystal Structure Analysis Of Renin-Indole-Piperazin
Inhibitor Complexes
pdb|3OQK|B Chain B, Crystal Structure Analysis Of Renin-Indole-Piperazin
Inhibitor Complexes
pdb|3Q3T|A Chain A, Alkyl Amine Renin Inhibitors: Filling S1 From S3
pdb|3Q3T|B Chain B, Alkyl Amine Renin Inhibitors: Filling S1 From S3
pdb|3SFC|A Chain A, Structure-Based Optimization Of Potent 4- And
6-Azaindole-3- Carboxamides As Renin Inhibitors
pdb|3SFC|B Chain B, Structure-Based Optimization Of Potent 4- And
6-Azaindole-3- Carboxamides As Renin Inhibitors
pdb|3Q4B|A Chain A, Clinically Useful Alkyl Amine Renin Inhibitors
pdb|3Q4B|B Chain B, Clinically Useful Alkyl Amine Renin Inhibitors
pdb|3Q5H|A Chain A, Clinically Useful Alkyl Amine Renin Inhibitors
pdb|3Q5H|B Chain B, Clinically Useful Alkyl Amine Renin Inhibitors
pdb|3VSW|A Chain A, Human Renin In Complex With Compound 8
pdb|3VSW|B Chain B, Human Renin In Complex With Compound 8
pdb|3VSX|A Chain A, Human Renin In Complex With Compound 18
pdb|3VSX|B Chain B, Human Renin In Complex With Compound 18
pdb|3VYD|A Chain A, Human Renin In Complex With Inhibitor 6
pdb|3VYD|B Chain B, Human Renin In Complex With Inhibitor 6
pdb|3VYE|A Chain A, Human Renin In Complex With Inhibitor 7
pdb|3VYE|B Chain B, Human Renin In Complex With Inhibitor 7
pdb|3VYF|A Chain A, Human Renin In Complex With Inhibitor 9
pdb|3VYF|B Chain B, Human Renin In Complex With Inhibitor 9
pdb|4GJ8|A Chain A, Crystal Structure Of Renin In Complex With Pkf909-724
(compound 3)
pdb|4GJ8|B Chain B, Crystal Structure Of Renin In Complex With Pkf909-724
(compound 3)
pdb|4GJ9|A Chain A, Crystal Structure Of Renin In Complex With Gp055321
(compound 4)
pdb|4GJ9|B Chain B, Crystal Structure Of Renin In Complex With Gp055321
(compound 4)
pdb|4GJA|A Chain A, Crystal Structure Of Renin In Complex With Nvp-ayl747
(compound 5)
pdb|4GJA|B Chain B, Crystal Structure Of Renin In Complex With Nvp-ayl747
(compound 5)
pdb|4GJB|A Chain A, Crystal Structure Of Renin In Complex With Nvp-bbv031
(compound 6)
pdb|4GJB|B Chain B, Crystal Structure Of Renin In Complex With Nvp-bbv031
(compound 6)
pdb|4GJC|A Chain A, Crystal Structure Of Renin In Complex With Nvp-bch965
(compound 9)
pdb|4GJC|B Chain B, Crystal Structure Of Renin In Complex With Nvp-bch965
(compound 9)
pdb|4GJD|A Chain A, Crystal Structure Of Renin In Complex With Nvp-bgq311
(compound 12)
pdb|4GJD|B Chain B, Crystal Structure Of Renin In Complex With Nvp-bgq311
(compound 12)
Length = 340
Score = 214 bits (545), Expect = 6e-56, Method: Compositional matrix adjust.
Identities = 106/242 (43%), Positives = 161/242 (66%), Gaps = 5/242 (2%)
Query: 70 VYLNNYLDAQYYGEIGIGSPPQSFSVVFDTGSSNLWVPSSKC-LFSISCYLHSRYRARLS 128
V L NY+D QYYGEIGIG+PPQ+F VVFDTGSSN+WVPSSKC +C H + A S
Sbjct: 10 VILTNYMDTQYYGEIGIGTPPQTFKVVFDTGSSNVWVPSSKCSRLYTACVYHKLFDASDS 69
Query: 129 RTYTKIGVPCKIHYGSGQISGFFSQDNVKIGDMIIKDQEFVEVTKEGLLPFLALQFDGIL 188
+Y G + Y +G +SGF SQD + +G + + Q F EVT+ LPF+ +FDG++
Sbjct: 70 SSYKHNGTELTLRYSTGTVSGFLSQDIITVGGITVT-QMFGEVTEMPALPFMLAEFDGVV 128
Query: 189 GLGFRDIAAGNATPLWYNMVRQGHISQKIFSLWLNQD-PNSE-VGGEIIFGGFDWRHFRG 246
G+GF + A G TP++ N++ QG + + +FS + N+D NS+ +GG+I+ GG D +H+ G
Sbjct: 129 GMGFIEQAIGRVTPIFDNIISQGVLKEDVFSFYYNRDSENSQSLGGQIVLGGSDPQHYEG 188
Query: 247 SHIYVPITEKGYWQIKVGDILIENSSTGFCEDGCTAILDSGTSVLAGPTTVVAQINHAIG 306
+ Y+ + + G WQI++ + + SST CEDGC A++D+G S ++G T+ + ++ A+G
Sbjct: 189 NFHYINLIKTGVWQIQMKGVSV-GSSTLLCEDGCLALVDTGASYISGSTSSIEKLMEALG 247
Query: 307 AE 308
A+
Sbjct: 248 AK 249
>pdb|3VCM|A Chain A, Crystal Structure Of Human Prorenin
pdb|3VCM|B Chain B, Crystal Structure Of Human Prorenin
Length = 335
Score = 214 bits (545), Expect = 6e-56, Method: Compositional matrix adjust.
Identities = 104/240 (43%), Positives = 158/240 (65%), Gaps = 6/240 (2%)
Query: 70 VYLNNYLDAQYYGEIGIGSPPQSFSVVFDTGSSNLWVPSSKC-LFSISCYLHSRYRARLS 128
V L NY+D QYYGEIGIG+PPQ+F VVFDTGSSN+WVPSSKC +C H + A S
Sbjct: 10 VILTNYMDTQYYGEIGIGTPPQTFKVVFDTGSSNVWVPSSKCSRLYTACVYHKLFDASDS 69
Query: 129 RTYTKIGVPCKIHYGSGQISGFFSQDNVKIGDMIIKDQEFVEVTKEGLLPFLALQFDGIL 188
+Y G + Y +G +SGF SQD + +G + + Q F EVT+ LPF+ +FDG++
Sbjct: 70 SSYKHNGTELTLRYSTGTVSGFLSQDIITVGGITVT-QMFGEVTEMPALPFMLAEFDGVV 128
Query: 189 GLGFRDIAAGNATPLWYNMVRQGHISQKIFSLWLNQDPNSEVGGEIIFGGFDWRHFRGSH 248
G+GF + A G TP++ N++ QG + + +FS + N+D +GG+I+ GG D +H+ G+
Sbjct: 129 GMGFIEQAIGRVTPIFDNIISQGVLKEDVFSFYYNRD---SLGGQIVLGGSDPQHYEGNF 185
Query: 249 IYVPITEKGYWQIKVGDILIENSSTGFCEDGCTAILDSGTSVLAGPTTVVAQINHAIGAE 308
Y+ + + G WQI++ + + SST CEDGC A++D+G S ++G T+ + ++ A+GA+
Sbjct: 186 HYINLIKTGVWQIQMKGVSV-GSSTLLCEDGCLALVDTGASYISGSTSSIEKLMEALGAK 244
>pdb|1G0V|A Chain A, The Structure Of Proteinase A Complexed With A Ia3 Mutant,
Mvv
Length = 329
Score = 201 bits (510), Expect = 7e-52, Method: Compositional matrix adjust.
Identities = 106/258 (41%), Positives = 154/258 (59%), Gaps = 18/258 (6%)
Query: 70 VYLNNYLDAQYYGEIGIGSPPQSFSVVFDTGSSNLWVPSSKCLFSISCYLHSRYRARLSR 129
V L NYL+AQYY +I +G+PPQ+F V+ DTGSSNLWVPS++C S++C+LHS+Y S
Sbjct: 5 VPLTNYLNAQYYTDITLGTPPQNFKVILDTGSSNLWVPSNEC-GSLACFLHSKYDHEASS 63
Query: 130 TYTKIGVPCKIHYGSGQISGFFSQDNVKIGDMIIKDQEFVEVTKEGLLPFLALQFDGILG 189
+Y G I YG+G + G+ SQD + IGD+ I Q+F E T E L F +FDGILG
Sbjct: 64 SYKANGTEFAIQYGTGSLEGYISQDTLSIGDLTIPKQDFAEATSEPGLTFAFGKFDGILG 123
Query: 190 LGFRDIAAGNATPLWYNMVRQGHISQKIFSLWL-NQDPNSEVGGEIIFGGFDWRHFRGSH 248
LG+ I+ P +YN ++Q + +K F+ +L + ++E GGE FGG D F+G
Sbjct: 124 LGYDTISVDKVVPPFYNAIQQDLLDEKRFAFYLGDTSKDTENGGEATFGGIDESKFKGDI 183
Query: 249 IYVPITEKGYWQIK-----VGDILIENSSTGFCEDGCTAILDSGTSVLAGPTTVVAQINH 303
++P+ K YW++K +GD E S G A +D+GTS++ P+ + IN
Sbjct: 184 TWLPVRRKAYWEVKFEGIGLGDEYAELESHG-------AAIDTGTSLITLPSGLAEMINA 236
Query: 304 AIGAE----GIVSMQCKT 317
IGA+ G ++ C T
Sbjct: 237 EIGAKKGSTGQYTLDCNT 254
>pdb|1DP5|A Chain A, The Structure Of Proteinase A Complexed With A Ia3 Mutant
Inhibitor
pdb|1DPJ|A Chain A, The Structure Of Proteinase A Complexed With Ia3 Peptide
Inhibitor
pdb|1FMU|A Chain A, Structure Of Native Proteinase A In P3221 Space Group.
pdb|1FMX|A Chain A, Structure Of Native Proteinase A In The Space Group P21
pdb|1FMX|B Chain B, Structure Of Native Proteinase A In The Space Group P21
Length = 329
Score = 200 bits (509), Expect = 8e-52, Method: Compositional matrix adjust.
Identities = 106/258 (41%), Positives = 154/258 (59%), Gaps = 18/258 (6%)
Query: 70 VYLNNYLDAQYYGEIGIGSPPQSFSVVFDTGSSNLWVPSSKCLFSISCYLHSRYRARLSR 129
V L NYL+AQYY +I +G+PPQ+F V+ DTGSSNLWVPS++C S++C+LHS+Y S
Sbjct: 5 VPLTNYLNAQYYTDITLGTPPQNFKVILDTGSSNLWVPSNEC-GSLACFLHSKYDHEASS 63
Query: 130 TYTKIGVPCKIHYGSGQISGFFSQDNVKIGDMIIKDQEFVEVTKEGLLPFLALQFDGILG 189
+Y G I YG+G + G+ SQD + IGD+ I Q+F E T E L F +FDGILG
Sbjct: 64 SYKANGTEFAIQYGTGSLEGYISQDTLSIGDLTIPKQDFAEATSEPGLTFAFGKFDGILG 123
Query: 190 LGFRDIAAGNATPLWYNMVRQGHISQKIFSLWL-NQDPNSEVGGEIIFGGFDWRHFRGSH 248
LG+ I+ P +YN ++Q + +K F+ +L + ++E GGE FGG D F+G
Sbjct: 124 LGYDTISVDKVVPPFYNAIQQDLLDEKRFAFYLGDTSKDTENGGEATFGGIDESKFKGDI 183
Query: 249 IYVPITEKGYWQIK-----VGDILIENSSTGFCEDGCTAILDSGTSVLAGPTTVVAQINH 303
++P+ K YW++K +GD E S G A +D+GTS++ P+ + IN
Sbjct: 184 TWLPVRRKAYWEVKFEGIGLGDEYAELESHG-------AAIDTGTSLITLPSGLAEMINA 236
Query: 304 AIGAE----GIVSMQCKT 317
IGA+ G ++ C T
Sbjct: 237 EIGAKKGWTGQYTLDCNT 254
>pdb|2JXR|A Chain A, Structure Of Yeast Proteinase A
pdb|1FQ4|A Chain A, Crystal Structure Of A Complex Between Hydroxyethylene
Inhibitor Cp- 108,420 And Yeast Aspartic Proteinase A
pdb|1FQ5|A Chain A, X-Ray Struture Of A Cyclic Statine Inhibitor Pd-129,541
Bound To Yeast Proteinase A
pdb|1FQ6|A Chain A, X-Ray Structure Of Glycol Inhibitor Pd-133,450 Bound To
Saccharopepsin
pdb|1FQ7|A Chain A, X-Ray Structure Of Inhibitor Cp-72,647 Bound To
Saccharopepsin
pdb|1FQ8|A Chain A, X-Ray Structure Of Difluorostatine Inhibitor Cp81,198
Bound To Saccharopepsin
Length = 329
Score = 200 bits (509), Expect = 9e-52, Method: Compositional matrix adjust.
Identities = 106/258 (41%), Positives = 154/258 (59%), Gaps = 18/258 (6%)
Query: 70 VYLNNYLDAQYYGEIGIGSPPQSFSVVFDTGSSNLWVPSSKCLFSISCYLHSRYRARLSR 129
V L NYL+AQYY +I +G+PPQ+F V+ DTGSSNLWVPS++C S++C+LHS+Y S
Sbjct: 5 VPLTNYLNAQYYTDITLGTPPQNFKVILDTGSSNLWVPSNEC-GSLACFLHSKYDHEASS 63
Query: 130 TYTKIGVPCKIHYGSGQISGFFSQDNVKIGDMIIKDQEFVEVTKEGLLPFLALQFDGILG 189
+Y G I YG+G + G+ SQD + IGD+ I Q+F E T E L F +FDGILG
Sbjct: 64 SYKANGTEFAIQYGTGSLEGYISQDTLSIGDLTIPKQDFAEATSEPGLTFAFGKFDGILG 123
Query: 190 LGFRDIAAGNATPLWYNMVRQGHISQKIFSLWL-NQDPNSEVGGEIIFGGFDWRHFRGSH 248
LG+ I+ P +YN ++Q + +K F+ +L + ++E GGE FGG D F+G
Sbjct: 124 LGYDTISVDKVVPPFYNAIQQDLLDEKRFAFYLGDTSKDTENGGEATFGGIDESKFKGDI 183
Query: 249 IYVPITEKGYWQIK-----VGDILIENSSTGFCEDGCTAILDSGTSVLAGPTTVVAQINH 303
++P+ K YW++K +GD E S G A +D+GTS++ P+ + IN
Sbjct: 184 TWLPVRRKAYWEVKFEGIGLGDEYAELESHG-------AAIDTGTSLITLPSGLAEMINA 236
Query: 304 AIGAE----GIVSMQCKT 317
IGA+ G ++ C T
Sbjct: 237 EIGAKKGWTGQYTLDCNT 254
>pdb|1FLH|A Chain A, Crystal Structure Of Human Uropepsin At 2.45 A Resolution
Length = 326
Score = 196 bits (498), Expect = 2e-50, Method: Compositional matrix adjust.
Identities = 109/252 (43%), Positives = 155/252 (61%), Gaps = 10/252 (3%)
Query: 72 LNNYLDAQYYGEIGIGSPPQSFSVVFDTGSSNLWVPSSKCLFSISCYLHSRYRARLSRTY 131
L NYLD +Y+G IGIG+P Q F+VVFDTGSSNLWVPS C S++C H+R+ S TY
Sbjct: 6 LENYLDMEYFGTIGIGTPAQDFTVVFDTGSSNLWVPSVYCS-SLACTNHNRFNPEDSSTY 64
Query: 132 TKIGVPCKIHYGSGQISGFFSQDNVKIGDMIIKDQEF-VEVTKEGLLPFLALQFDGILGL 190
I YG+G ++G D V++G + +Q F + T+ G + A FDGILGL
Sbjct: 65 QSTSETVSITYGTGSMTGILGYDTVQVGGISDTNQIFGLSETEPGSFLYYA-PFDGILGL 123
Query: 191 GFRDIAAGNATPLWYNMVRQGHISQKIFSLWLNQDPNSEVGGEIIFGGFDWRHFRGSHIY 250
+ I++ ATP++ N+ QG +SQ +FS++L+ D S G +IFGG D ++ GS +
Sbjct: 124 AYPSISSSGATPVFDNIWNQGLVSQDLFSVYLSADDQS--GSVVIFGGIDSSYYTGSLNW 181
Query: 251 VPITEKGYWQIKVGDILIENSSTGFCEDGCTAILDSGTSVLAGPTTVVAQINHAIGA--- 307
VP+T +GYWQI V D + N C +GC AI+D+GTS+L GPT+ +A I IGA
Sbjct: 182 VPVTVEGYWQITV-DSITMNGEAIACAEGCQAIVDTGTSLLTGPTSPIANIQSDIGASEN 240
Query: 308 -EGIVSMQCKTV 318
+G + + C +
Sbjct: 241 SDGDMVVSCSAI 252
>pdb|1PSO|E Chain E, The Crystal Structure Of Human Pepsin And Its Complex With
Pepstatin
pdb|1QRP|E Chain E, Human Pepsin 3a In Complex With A Phosphonate Inhibitor
Iva-Val-Val- Leu(P)-(O)phe-Ala-Ala-Ome
pdb|1PSN|A Chain A, The Crystal Structure Of Human Pepsin And Its Complex With
Pepstatin
pdb|3UTL|A Chain A, Human Pepsin 3b
Length = 326
Score = 196 bits (498), Expect = 2e-50, Method: Compositional matrix adjust.
Identities = 114/269 (42%), Positives = 165/269 (61%), Gaps = 13/269 (4%)
Query: 72 LNNYLDAQYYGEIGIGSPPQSFSVVFDTGSSNLWVPSSKCLFSISCYLHSRYRARLSRTY 131
L NYLD +Y+G IGIG+P Q F+VVFDTGSSNLWVPS C S++C H+R+ S TY
Sbjct: 6 LENYLDMEYFGTIGIGTPAQDFTVVFDTGSSNLWVPSVYCS-SLACTNHNRFNPEDSSTY 64
Query: 132 TKIGVPCKIHYGSGQISGFFSQDNVKIGDMIIKDQEF-VEVTKEGLLPFLALQFDGILGL 190
I YG+G ++G D V++G + +Q F + T+ G + A FDGILGL
Sbjct: 65 QSTSETVSITYGTGSMTGILGYDTVQVGGISDTNQIFGLSETEPGSFLYYA-PFDGILGL 123
Query: 191 GFRDIAAGNATPLWYNMVRQGHISQKIFSLWLNQDPNSEVGGEIIFGGFDWRHFRGSHIY 250
+ I++ ATP++ N+ QG +SQ +FS++L+ D S G +IFGG D ++ GS +
Sbjct: 124 AYPSISSSGATPVFDNIWNQGLVSQDLFSVYLSADDQS--GSVVIFGGIDSSYYTGSLNW 181
Query: 251 VPITEKGYWQIKVGDILIENSSTGFCEDGCTAILDSGTSVLAGPTTVVAQINHAIGA--- 307
VP+T +GYWQI V D + N C +GC AI+D+GTS+L GPT+ +A I IGA
Sbjct: 182 VPVTVEGYWQITV-DSITMNGEAIACAEGCQAIVDTGTSLLTGPTSPIANIQSDIGASEN 240
Query: 308 -EGIVSMQCKTVVFEYGNMIWEFLISGVQ 335
+G + + C + + +++ F I+GVQ
Sbjct: 241 SDGDMVVSC-SAISSLPDIV--FTINGVQ 266
>pdb|3PSG|A Chain A, The High Resolution Crystal Structure Of Porcine
Pepsinogen
Length = 370
Score = 192 bits (488), Expect = 2e-49, Method: Compositional matrix adjust.
Identities = 113/301 (37%), Positives = 176/301 (58%), Gaps = 19/301 (6%)
Query: 32 LLRIQL-KKRQLGINTINAARL--ITKNEVHNRFNH--PKADVVY----LNNYLDAQYYG 82
L+++ L +K+ L N I +L K HN + P+A + L NYLD +Y+G
Sbjct: 1 LVKVPLVRKKSLRQNLIKDGKLKDFLKTHKHNPASKYFPEAAALIGDEPLENYLDTEYFG 60
Query: 83 EIGIGSPPQSFSVVFDTGSSNLWVPSSKCLFSISCYLHSRYRARLSRTYTKIGVPCKIHY 142
IGIG+P Q F+V+FDTGSSNLWVPS C S++C H+++ S T+ I Y
Sbjct: 61 TIGIGTPAQDFTVIFDTGSSNLWVPSVYC-SSLACSDHNQFNPDDSSTFEATSQELSITY 119
Query: 143 GSGQISGFFSQDNVKIGDMIIKDQEF-VEVTKEGLLPFLALQFDGILGLGFRDIAAGNAT 201
G+G ++G D V++G + +Q F + T+ G + A FDGILGL + I+A AT
Sbjct: 120 GTGSMTGILGYDTVQVGGISDTNQIFGLSETEPGSFLYYA-PFDGILGLAYPSISASGAT 178
Query: 202 PLWYNMVRQGHISQKIFSLWLNQDPNSEVGGEIIFGGFDWRHFRGSHIYVPITEKGYWQI 261
P++ N+ QG +SQ +FS++L+ N + G ++ GG D ++ GS +VP++ +GYWQI
Sbjct: 179 PVFDNLWDQGLVSQDLFSVYLSS--NDDSGSVVLLGGIDSSYYTGSLNWVPVSVEGYWQI 236
Query: 262 KVGDILIENSSTGFCEDGCTAILDSGTSVLAGPTTVVAQINHAIGA----EGIVSMQCKT 317
+ I ++ + C GC AI+D+GTS+L GPT+ +A I IGA +G + + C +
Sbjct: 237 TLDSITMDGETIA-CSGGCQAIVDTGTSLLTGPTSAIANIQSDIGASENSDGEMVISCSS 295
Query: 318 V 318
+
Sbjct: 296 I 296
>pdb|2PSG|A Chain A, Refined Structure Of Porcine Pepsinogen At 1.8 Angstroms
Resolution
Length = 370
Score = 192 bits (488), Expect = 3e-49, Method: Compositional matrix adjust.
Identities = 113/301 (37%), Positives = 176/301 (58%), Gaps = 19/301 (6%)
Query: 32 LLRIQL-KKRQLGINTINAARL--ITKNEVHNRFNH--PKADVVY----LNNYLDAQYYG 82
L+++ L +K+ L N I +L K HN + P+A + L NYLD +Y+G
Sbjct: 1 LVKVPLVRKKSLRQNLIKDGKLKDFLKTHKHNPASKYFPEAAALIGDEPLENYLDTEYFG 60
Query: 83 EIGIGSPPQSFSVVFDTGSSNLWVPSSKCLFSISCYLHSRYRARLSRTYTKIGVPCKIHY 142
IGIG+P Q F+V+FDTGSSNLWVPS C S++C H+++ S T+ I Y
Sbjct: 61 TIGIGTPAQDFTVIFDTGSSNLWVPSVYC-SSLACSDHNQFNPDDSSTFEATXQELSITY 119
Query: 143 GSGQISGFFSQDNVKIGDMIIKDQEF-VEVTKEGLLPFLALQFDGILGLGFRDIAAGNAT 201
G+G ++G D V++G + +Q F + T+ G + A FDGILGL + I+A AT
Sbjct: 120 GTGSMTGILGYDTVQVGGISDTNQIFGLSETEPGSFLYYA-PFDGILGLAYPSISASGAT 178
Query: 202 PLWYNMVRQGHISQKIFSLWLNQDPNSEVGGEIIFGGFDWRHFRGSHIYVPITEKGYWQI 261
P++ N+ QG +SQ +FS++L+ N + G ++ GG D ++ GS +VP++ +GYWQI
Sbjct: 179 PVFDNLWDQGLVSQDLFSVYLSS--NDDSGSVVLLGGIDSSYYTGSLNWVPVSVEGYWQI 236
Query: 262 KVGDILIENSSTGFCEDGCTAILDSGTSVLAGPTTVVAQINHAIGA----EGIVSMQCKT 317
+ I ++ + C GC AI+D+GTS+L GPT+ +A I IGA +G + + C +
Sbjct: 237 TLDSITMDGETIA-CSGGCQAIVDTGTSLLTGPTSAIANIQSDIGASENSDGEMVISCSS 295
Query: 318 V 318
+
Sbjct: 296 I 296
>pdb|1HTR|B Chain B, Crystal And Molecular Structures Of Human Progastricsin At
1.62 Angstroms Resolution
pdb|1AVF|A Chain A, Activation Intermediate 2 Of Human Gastricsin From Human
Stomach
pdb|1AVF|J Chain J, Activation Intermediate 2 Of Human Gastricsin From Human
Stomach
Length = 329
Score = 190 bits (483), Expect = 9e-49, Method: Compositional matrix adjust.
Identities = 95/234 (40%), Positives = 144/234 (61%), Gaps = 2/234 (0%)
Query: 75 YLDAQYYGEIGIGSPPQSFSVVFDTGSSNLWVPSSKCLFSISCYLHSRYRARLSRTYTKI 134
Y+DA Y+GEI IG+PPQ+F V+FDTGSSNLWVPS C S +C HSR+ S TY+
Sbjct: 9 YMDAAYFGEISIGTPPQNFLVLFDTGSSNLWVPSVYCQ-SQACTSHSRFNPSESSTYSTN 67
Query: 135 GVPCKIHYGSGQISGFFSQDNVKIGDMIIKDQEFVEVTKEGLLPFLALQFDGILGLGFRD 194
G + YGSG ++GFF D + + + + +QEF E F+ QFDGI+GL +
Sbjct: 68 GQTFSLQYGSGSLTGFFGYDTLTVQSIQVPNQEFGLSENEPGTNFVYAQFDGIMGLAYPA 127
Query: 195 IAAGNATPLWYNMVRQGHISQKIFSLWLNQDPNSEVGGEIIFGGFDWRHFRGSHIYVPIT 254
++ AT MV++G ++ +FS++L+ S GG ++FGG D + G + P+T
Sbjct: 128 LSVDEATTAMQGMVQEGALTSPVFSVYLSNQQGSS-GGAVVFGGVDSSLYTGQIYWAPVT 186
Query: 255 EKGYWQIKVGDILIENSSTGFCEDGCTAILDSGTSVLAGPTTVVAQINHAIGAE 308
++ YWQI + + LI ++G+C +GC AI+D+GTS+L P ++ + A GA+
Sbjct: 187 QELYWQIGIEEFLIGGQASGWCSEGCQAIVDTGTSLLTVPQQYMSALLQATGAQ 240
>pdb|5PEP|A Chain A, X-Ray Analyses Of Aspartic Proteases. Ii.
Three-Dimensional Structure Of The Hexagonal Crystal
Form Of Porcine Pepsin At 2.3 Angstroms Resolution
Length = 326
Score = 189 bits (480), Expect = 2e-48, Method: Compositional matrix adjust.
Identities = 106/269 (39%), Positives = 164/269 (60%), Gaps = 13/269 (4%)
Query: 72 LNNYLDAQYYGEIGIGSPPQSFSVVFDTGSSNLWVPSSKCLFSISCYLHSRYRARLSRTY 131
L NYLD +Y+G IGIG+P Q F+V+FDTGSSNLWVPS C S++C H+++ S T+
Sbjct: 6 LENYLDTEYFGTIGIGTPAQDFTVIFDTGSSNLWVPSVYCS-SLACSDHNQFNPDDSSTF 64
Query: 132 TKIGVPCKIHYGSGQISGFFSQDNVKIGDMIIKDQEF-VEVTKEGLLPFLALQFDGILGL 190
I YG+G ++G D V++G + +Q F + T+ G + A FDGILGL
Sbjct: 65 EATSQELSITYGTGSMTGILGYDTVQVGGISDTNQIFGLSETEPGSFLYYA-PFDGILGL 123
Query: 191 GFRDIAAGNATPLWYNMVRQGHISQKIFSLWLNQDPNSEVGGEIIFGGFDWRHFRGSHIY 250
+ I+A ATP++ N+ QG +SQ +FS++L+ N + G ++ GG D ++ GS +
Sbjct: 124 AYPSISASGATPVFDNLWDQGLVSQDLFSVYLSS--NDDSGSVVLLGGIDSSYYTGSLNW 181
Query: 251 VPITEKGYWQIKVGDILIENSSTGFCEDGCTAILDSGTSVLAGPTTVVAQINHAIGA--- 307
VP++ +GYWQI + I ++ + C GC AI+D+GTS+L GPT+ +A I IGA
Sbjct: 182 VPVSVEGYWQITLDSITMDGETIA-CSGGCQAIVDTGTSLLTGPTSAIANIQSDIGASEN 240
Query: 308 -EGIVSMQCKTVVFEYGNMIWEFLISGVQ 335
+G + + C ++ +++ F I+GVQ
Sbjct: 241 SDGEMVISCSSIA-SLPDIV--FTINGVQ 266
>pdb|3PEP|A Chain A, Revised 2.3 Angstroms Structure Of Porcine Pepsin.
Evidence For A Flexible Subdomain
Length = 326
Score = 188 bits (478), Expect = 4e-48, Method: Compositional matrix adjust.
Identities = 101/252 (40%), Positives = 155/252 (61%), Gaps = 10/252 (3%)
Query: 72 LNNYLDAQYYGEIGIGSPPQSFSVVFDTGSSNLWVPSSKCLFSISCYLHSRYRARLSRTY 131
L NYLD +Y+G IGIG+P Q F+V+FDTGSSNLWVPS C S++C H+++ S T+
Sbjct: 6 LENYLDTEYFGTIGIGTPAQDFTVIFDTGSSNLWVPSVYCS-SLACSDHNQFNPDDSSTF 64
Query: 132 TKIGVPCKIHYGSGQISGFFSQDNVKIGDMIIKDQEF-VEVTKEGLLPFLALQFDGILGL 190
I YG+G ++G D V++G + +Q F + T+ G + A FDGILGL
Sbjct: 65 EATSQELSITYGTGSMTGILGYDTVQVGGISDTNQIFGLSETEPGSFLYYA-PFDGILGL 123
Query: 191 GFRDIAAGNATPLWYNMVRQGHISQKIFSLWLNQDPNSEVGGEIIFGGFDWRHFRGSHIY 250
+ I+A ATP++ N+ QG +SQ +FS++L+ N + G ++ GG D ++ GS +
Sbjct: 124 AYPSISASGATPVFDNLWDQGLVSQDLFSVYLSS--NDDSGSVVLLGGIDSSYYTGSLNW 181
Query: 251 VPITEKGYWQIKVGDILIENSSTGFCEDGCTAILDSGTSVLAGPTTVVAQINHAIGA--- 307
VP++ +GYWQI + I ++ + C GC AI+D+GTS+L GPT+ +A I IGA
Sbjct: 182 VPVSVEGYWQITLDSITMDGETIA-CSGGCQAIVDTGTSLLTGPTSAIANIQSDIGASEN 240
Query: 308 -EGIVSMQCKTV 318
+G + + C ++
Sbjct: 241 SDGEMVISCSSI 252
>pdb|1PSA|A Chain A, Structure Of A Pepsin(Slash)renin Inhibitor Complex
Reveals A Novel Crystal Packing Induced By Minor
Chemical Alterations In The Inhibitor
pdb|1PSA|B Chain B, Structure Of A Pepsin(Slash)renin Inhibitor Complex
Reveals A Novel Crystal Packing Induced By Minor
Chemical Alterations In The Inhibitor
pdb|1YX9|A Chain A, Effect Of Dimethyl Sulphoxide On The Crystal Structure Of
Porcine Pepsin
Length = 326
Score = 188 bits (478), Expect = 4e-48, Method: Compositional matrix adjust.
Identities = 101/252 (40%), Positives = 155/252 (61%), Gaps = 10/252 (3%)
Query: 72 LNNYLDAQYYGEIGIGSPPQSFSVVFDTGSSNLWVPSSKCLFSISCYLHSRYRARLSRTY 131
L NYLD +Y+G IGIG+P Q F+V+FDTGSSNLWVPS C S++C H+++ S T+
Sbjct: 6 LENYLDTEYFGTIGIGTPAQDFTVIFDTGSSNLWVPSVYCS-SLACSDHNQFNPDDSSTF 64
Query: 132 TKIGVPCKIHYGSGQISGFFSQDNVKIGDMIIKDQEF-VEVTKEGLLPFLALQFDGILGL 190
I YG+G ++G D V++G + +Q F + T+ G + A FDGILGL
Sbjct: 65 EATSQELSITYGTGSMTGILGYDTVQVGGISDTNQIFGLSETEPGSFLYYA-PFDGILGL 123
Query: 191 GFRDIAAGNATPLWYNMVRQGHISQKIFSLWLNQDPNSEVGGEIIFGGFDWRHFRGSHIY 250
+ I+A ATP++ N+ QG +SQ +FS++L+ N + G ++ GG D ++ GS +
Sbjct: 124 AYPSISASGATPVFDNLWDQGLVSQDLFSVYLSS--NDDSGSVVLLGGIDSSYYTGSLNW 181
Query: 251 VPITEKGYWQIKVGDILIENSSTGFCEDGCTAILDSGTSVLAGPTTVVAQINHAIGA--- 307
VP++ +GYWQI + I ++ + C GC AI+D+GTS+L GPT+ +A I IGA
Sbjct: 182 VPVSVEGYWQITLDSITMDGETIA-CSGGCQAIVDTGTSLLTGPTSAIANIQSDIGASEN 240
Query: 308 -EGIVSMQCKTV 318
+G + + C ++
Sbjct: 241 SDGEMVISCSSI 252
>pdb|1F34|A Chain A, Crystal Structure Of Ascaris Pepsin Inhibitor-3 Bound To
Porcine Pepsin
Length = 326
Score = 188 bits (477), Expect = 4e-48, Method: Compositional matrix adjust.
Identities = 101/252 (40%), Positives = 155/252 (61%), Gaps = 10/252 (3%)
Query: 72 LNNYLDAQYYGEIGIGSPPQSFSVVFDTGSSNLWVPSSKCLFSISCYLHSRYRARLSRTY 131
L NYLD +Y+G IGIG+P Q F+V+FDTGSSNLWVPS C S++C H+++ S T+
Sbjct: 6 LENYLDTEYFGTIGIGTPAQDFTVIFDTGSSNLWVPSVYCS-SLACSDHNQFNPDDSSTF 64
Query: 132 TKIGVPCKIHYGSGQISGFFSQDNVKIGDMIIKDQEF-VEVTKEGLLPFLALQFDGILGL 190
I YG+G ++G D V++G + +Q F + T+ G + A FDGILGL
Sbjct: 65 EATXQELSITYGTGSMTGILGYDTVQVGGISDTNQIFGLSETEPGSFLYYA-PFDGILGL 123
Query: 191 GFRDIAAGNATPLWYNMVRQGHISQKIFSLWLNQDPNSEVGGEIIFGGFDWRHFRGSHIY 250
+ I+A ATP++ N+ QG +SQ +FS++L+ N + G ++ GG D ++ GS +
Sbjct: 124 AYPSISASGATPVFDNLWDQGLVSQDLFSVYLSS--NDDSGSVVLLGGIDSSYYTGSLNW 181
Query: 251 VPITEKGYWQIKVGDILIENSSTGFCEDGCTAILDSGTSVLAGPTTVVAQINHAIGA--- 307
VP++ +GYWQI + I ++ + C GC AI+D+GTS+L GPT+ +A I IGA
Sbjct: 182 VPVSVEGYWQITLDSITMDGETIA-CSGGCQAIVDTGTSLLTGPTSAIANIQSDIGASEN 240
Query: 308 -EGIVSMQCKTV 318
+G + + C ++
Sbjct: 241 SDGEMVISCSSI 252
>pdb|4PEP|A Chain A, The Molecular And Crystal Structures Of Monoclinic Porcine
Pepsin Refined At 1.8 Angstroms Resolution
Length = 326
Score = 188 bits (477), Expect = 5e-48, Method: Compositional matrix adjust.
Identities = 101/252 (40%), Positives = 155/252 (61%), Gaps = 10/252 (3%)
Query: 72 LNNYLDAQYYGEIGIGSPPQSFSVVFDTGSSNLWVPSSKCLFSISCYLHSRYRARLSRTY 131
L NYLD +Y+G IGIG+P Q F+V+FDTGSSNLWVPS C S++C H+++ S T+
Sbjct: 6 LENYLDTEYFGTIGIGTPAQDFTVIFDTGSSNLWVPSVYCS-SLACSDHNQFNPDDSSTF 64
Query: 132 TKIGVPCKIHYGSGQISGFFSQDNVKIGDMIIKDQEF-VEVTKEGLLPFLALQFDGILGL 190
I YG+G ++G D V++G + +Q F + T+ G + A FDGILGL
Sbjct: 65 EATXQELSITYGTGSMTGILGYDTVQVGGISDTNQIFGLSETEPGSFLYYA-PFDGILGL 123
Query: 191 GFRDIAAGNATPLWYNMVRQGHISQKIFSLWLNQDPNSEVGGEIIFGGFDWRHFRGSHIY 250
+ I+A ATP++ N+ QG +SQ +FS++L+ N + G ++ GG D ++ GS +
Sbjct: 124 AYPSISASGATPVFDNLWDQGLVSQDLFSVYLSS--NDDSGSVVLLGGIDSSYYTGSLNW 181
Query: 251 VPITEKGYWQIKVGDILIENSSTGFCEDGCTAILDSGTSVLAGPTTVVAQINHAIGA--- 307
VP++ +GYWQI + I ++ + C GC AI+D+GTS+L GPT+ +A I IGA
Sbjct: 182 VPVSVEGYWQITLDSITMDGETIA-CSGGCQAIVDTGTSLLTGPTSAIANIQSDIGASEN 240
Query: 308 -EGIVSMQCKTV 318
+G + + C ++
Sbjct: 241 SDGEMVISCSSI 252
>pdb|4AA9|A Chain A, Camel Chymosin At 1.6a Resolution
Length = 320
Score = 181 bits (458), Expect = 6e-46, Method: Compositional matrix adjust.
Identities = 100/260 (38%), Positives = 154/260 (59%), Gaps = 15/260 (5%)
Query: 72 LNNYLDAQYYGEIGIGSPPQSFSVVFDTGSSNLWVPSSKCLFSISCYLHSRYRARLSRTY 131
L +YLD+QY+G+I IG+PPQ F+VVFDTGSS+LWVPS C ++ C H R+ R S T+
Sbjct: 5 LTSYLDSQYFGKIYIGTPPQEFTVVFDTGSSDLWVPSIYCKSNV-CKNHHRFDPRKSSTF 63
Query: 132 TKIGVPCKIHYGSGQISGFFSQDNVKIGDMIIKDQEFVEVTKEGLLPFLALQFDGILGLG 191
+G P IHYG+G + GF D V + +++ +Q T++ F +FDGILGL
Sbjct: 64 RNLGKPLSIHYGTGSMEGFLGYDTVTVSNIVDPNQTVGLSTEQPGEVFTYSEFDGILGLA 123
Query: 192 FRDIAAGNATPLWYNMVRQGHISQKIFSLWLNQDPNSEVGGEIIFGGFDWRHFRGSHIYV 251
+ +A+ + P++ NM+ + +++ +FS++++++ G + G D ++ GS +V
Sbjct: 124 YPSLASEYSVPVFDNMMDRHLVARDLFSVYMDRNGQ---GSMLTLGAIDPSYYTGSLHWV 180
Query: 252 PITEKGYWQIKVGDILIENSSTGFCEDGCTAILDSGTSVLAGPTTVVAQINHAIGAE--- 308
P+T + YWQ V + I + C GC AILD+GTSVL GP++ + +I AIGA
Sbjct: 181 PVTLQQYWQFTVDSVTINGVAVA-CVGGCQAILDTGTSVLFGPSSDILKIQMAIGATENR 239
Query: 309 -GIVSMQC------KTVVFE 321
G + C TVVFE
Sbjct: 240 YGEFDVNCGNLRSMPTVVFE 259
>pdb|1CZI|E Chain E, Chymosin Complex With The Inhibitor Cp-113972
pdb|1CMS|A Chain A, The Three-Dimensional Structure Of Recombinant Bovine
Chymosin At 2.3 Angstroms Resolution
pdb|4CMS|A Chain A, X-Ray Analyses Of Aspartic Proteinases Iv. Structure And
Refinement At 2.2 Angstroms Resolution Of Bovine
Chymosin
pdb|4AA8|A Chain A, Bovine Chymosin At 1.8a Resolution
Length = 323
Score = 180 bits (457), Expect = 9e-46, Method: Compositional matrix adjust.
Identities = 103/288 (35%), Positives = 157/288 (54%), Gaps = 19/288 (6%)
Query: 70 VYLNNYLDAQYYGEIGIGSPPQSFSVVFDTGSSNLWVPSSKCLFSISCYLHSRYRARLSR 129
V L NYLD+QY+G+I +G+PPQ F+V+FDTGSS+ WVPS C S +C H R+ R S
Sbjct: 6 VPLTNYLDSQYFGKIYLGTPPQEFTVLFDTGSSDFWVPSIYCK-SNACKNHQRFDPRKSS 64
Query: 130 TYTKIGVPCKIHYGSGQISGFFSQDNVKIGDMIIKDQEFVEVTKEGLLPFLALQFDGILG 189
T+ +G P IHYG+G + G D V + +++ Q T+E F +FDGILG
Sbjct: 65 TFQNLGKPLSIHYGTGSMQGILGYDTVTVSNIVDIQQTVGLSTQEPGDVFTYAEFDGILG 124
Query: 190 LGFRDIAAGNATPLWYNMVRQGHISQKIFSLWLNQDPNSEVGGEIIFGGFDWRHFRGSHI 249
+ + +A+ + P++ NM+ + ++Q +FS++++++ + + G D ++ GS
Sbjct: 125 MAYPSLASEYSIPVFDNMMNRHLVAQDLFSVYMDRNGQESM---LTLGAIDPSYYTGSLH 181
Query: 250 YVPITEKGYWQIKVGDILIENSSTGFCEDGCTAILDSGTSVLAGPTTVVAQINHAIGAE- 308
+VP+T + YWQ V + I CE GC AILD+GTS L GP++ + I AIGA
Sbjct: 182 WVPVTVQQYWQFTVDSVTISGVVVA-CEGGCQAILDTGTSKLVGPSSDILNIQQAIGATQ 240
Query: 309 ---GIVSMQCK------TVVFEYGNMIWEFLISGVQPETVCSDIGLCV 347
G + C TVVFE ++ S + D G C
Sbjct: 241 NQYGEFDIDCDNLSYMPTVVFEINGKMYPLTPSAYTSQ----DQGFCT 284
>pdb|3CMS|A Chain A, Engineering Enzyme Sub-Site Specificity: Preparation,
Kinetic Characterization And X-Ray Analysis At
2.0-Angstroms Resolution Of Val111phe Site-Mutated Calf
Chymosin
Length = 323
Score = 180 bits (456), Expect = 1e-45, Method: Compositional matrix adjust.
Identities = 103/288 (35%), Positives = 157/288 (54%), Gaps = 19/288 (6%)
Query: 70 VYLNNYLDAQYYGEIGIGSPPQSFSVVFDTGSSNLWVPSSKCLFSISCYLHSRYRARLSR 129
V L NYLD+QY+G+I +G+PPQ F+V+FDTGSS+ WVPS C S +C H R+ R S
Sbjct: 6 VPLTNYLDSQYFGKIYLGTPPQEFTVLFDTGSSDFWVPSIYCK-SNACKNHQRFDPRKSS 64
Query: 130 TYTKIGVPCKIHYGSGQISGFFSQDNVKIGDMIIKDQEFVEVTKEGLLPFLALQFDGILG 189
T+ +G P IHYG+G + G D V + +++ Q T+E F +FDGILG
Sbjct: 65 TFQNLGKPLSIHYGTGSMQGILGYDTVTVSNIVDIQQTVGLSTQEPGDFFTYAEFDGILG 124
Query: 190 LGFRDIAAGNATPLWYNMVRQGHISQKIFSLWLNQDPNSEVGGEIIFGGFDWRHFRGSHI 249
+ + +A+ + P++ NM+ + ++Q +FS++++++ + + G D ++ GS
Sbjct: 125 MAYPSLASEYSIPVFDNMMNRHLVAQDLFSVYMDRNGQESM---LTLGAIDPSYYTGSLH 181
Query: 250 YVPITEKGYWQIKVGDILIENSSTGFCEDGCTAILDSGTSVLAGPTTVVAQINHAIGAE- 308
+VP+T + YWQ V + I CE GC AILD+GTS L GP++ + I AIGA
Sbjct: 182 WVPVTVQQYWQFTVDSVTISGVVVA-CEGGCQAILDTGTSKLVGPSSDILNIQQAIGATQ 240
Query: 309 ---GIVSMQCK------TVVFEYGNMIWEFLISGVQPETVCSDIGLCV 347
G + C TVVFE ++ S + D G C
Sbjct: 241 NQYGEFDIDCDNLSYMPTVVFEINGKMYPLTPSAYTSQ----DQGFCT 284
>pdb|1AM5|A Chain A, The Crystal Structure And Proposed Amino Acid Sequence Of
A Pepsin From Atlantic Cod (Gadus Morhua)
Length = 324
Score = 177 bits (450), Expect = 5e-45, Method: Compositional matrix adjust.
Identities = 101/251 (40%), Positives = 144/251 (57%), Gaps = 10/251 (3%)
Query: 72 LNNYLDAQYYGEIGIGSPPQSFSVVFDTGSSNLWVPSSKCLFSISCYLHSRYRARLSRTY 131
+ N D +YYG I IG+PP+SF V+FDTGSSNLWV SS C + +C H++++ R S TY
Sbjct: 6 MKNEADTEYYGVISIGTPPESFKVIFDTGSSNLWVSSSHCS-AQACSNHNKFKPRQSSTY 64
Query: 132 TKIGVPCKIHYGSGQISGFFSQDNVKIGDMIIKDQEFVEVTKEGLLPF-LALQFDGILGL 190
+ G + YG+G + G QD V +G +QE E E PF A FDGILGL
Sbjct: 65 VETGKTVDLTYGTGGMRGILGQDTVSVGGGSDPNQELGESQTE-PGPFQAAAPFDGILGL 123
Query: 191 GFRDIAAGNATPLWYNMVRQGHISQKIFSLWLNQDPNSEVGGEIIFGGFDWRHFRGSHIY 250
+ IAA A P++ NM Q + + +FS +L+ G E++ GG D H+ GS +
Sbjct: 124 AYPSIAAAGAVPVFDNMGSQSLVEKDLFSFYLSG--GGANGSEVMLGGVDNSHYTGSIHW 181
Query: 251 VPITEKGYWQIKVGDILIENSSTGFCEDGCTAILDSGTSVLAGPTTVVAQINHAIGA--- 307
+P+T + YWQ+ + I + N T CE GC AI+D+GTS + P + +A I IGA
Sbjct: 182 IPVTAEKYWQVALDGITV-NGQTAACE-GCQAIVDTGTSKIVAPVSALANIMKDIGASEN 239
Query: 308 EGIVSMQCKTV 318
+G + C +V
Sbjct: 240 QGEMMGNCASV 250
>pdb|3OAD|A Chain A, Design And Optimization Of New Piperidines As Renin
Inhibitors
pdb|3OAD|C Chain C, Design And Optimization Of New Piperidines As Renin
Inhibitors
pdb|3OAG|A Chain A, Design And Optimization Of New Piperidines As Renin
Inhibitors
pdb|3OAG|C Chain C, Design And Optimization Of New Piperidines As Renin
Inhibitors
pdb|3O9L|A Chain A, Design And Optimisation Of New Piperidines As Renin
Inhibitors
pdb|3O9L|C Chain C, Design And Optimisation Of New Piperidines As Renin
Inhibitors
Length = 166
Score = 157 bits (396), Expect = 1e-38, Method: Compositional matrix adjust.
Identities = 74/157 (47%), Positives = 104/157 (66%), Gaps = 2/157 (1%)
Query: 70 VYLNNYLDAQYYGEIGIGSPPQSFSVVFDTGSSNLWVPSSKC-LFSISCYLHSRYRARLS 128
V L NY+D QYYGEIGIG+PPQ+F VVFDTGSSN+WVPSSKC +C H + A S
Sbjct: 10 VILTNYMDTQYYGEIGIGTPPQTFKVVFDTGSSNVWVPSSKCSRLYTACVYHKLFDASDS 69
Query: 129 RTYTKIGVPCKIHYGSGQISGFFSQDNVKIGDMIIKDQEFVEVTKEGLLPFLALQFDGIL 188
+Y G + Y +G +SGF SQD + +G + + Q F EVT+ LPF+ +FDG++
Sbjct: 70 SSYKHNGTELTLRYSTGTVSGFLSQDIITVGGITVT-QMFGEVTEMPALPFMLAEFDGVV 128
Query: 189 GLGFRDIAAGNATPLWYNMVRQGHISQKIFSLWLNQD 225
G+GF + A G TP++ N++ QG + + +FS + N+D
Sbjct: 129 GMGFIEQAIGRVTPIFDNIISQGVLKEDVFSFYYNRD 165
>pdb|3QRV|A Chain A, Crystal Structure Of Plasmepsin I (Pmi) From Plasmodium
Falciparum
pdb|3QRV|B Chain B, Crystal Structure Of Plasmepsin I (Pmi) From Plasmodium
Falciparum
pdb|3QS1|A Chain A, Crystal Structure Of Kni-10006 Complex Of Plasmepsin I
(Pmi) From Plasmodium Falciparum
pdb|3QS1|B Chain B, Crystal Structure Of Kni-10006 Complex Of Plasmepsin I
(Pmi) From Plasmodium Falciparum
pdb|3QS1|C Chain C, Crystal Structure Of Kni-10006 Complex Of Plasmepsin I
(Pmi) From Plasmodium Falciparum
pdb|3QS1|D Chain D, Crystal Structure Of Kni-10006 Complex Of Plasmepsin I
(Pmi) From Plasmodium Falciparum
Length = 336
Score = 149 bits (377), Expect = 2e-36, Method: Compositional matrix adjust.
Identities = 88/234 (37%), Positives = 132/234 (56%), Gaps = 19/234 (8%)
Query: 68 DVVYLNNYLDAQYYGEIGIGSPPQSFSVVFDTGSSNLWVPSSKCLFSISCYLHSRYRARL 127
D V LN+ + YYGE IG Q F+ +FDTGS+NLWVPS++C +I C + Y +
Sbjct: 11 DSVTLNDVANVMYYGEAQIGDNKQKFAFIFDTGSANLWVPSAQCN-TIGCKTKNLYDSNK 69
Query: 128 SRTYTKIGVPCKIHYGSGQISGFFSQDNVKIGDMIIKDQEFVEVTK-EGLLPFLAL-QFD 185
S+TY K G +++Y SG +SGFFS+D V I ++ +F+EVT G P L QFD
Sbjct: 70 SKTYEKDGTKVEMNYVSGTVSGFFSKDIVTIANLSFP-YKFIEVTDTNGFEPAYTLGQFD 128
Query: 186 GILGLGFRDIAAGNATPLWYNMVRQGHISQKIFSLWLNQDPNSEVGGEIIFGGFDWRHFR 245
GI+GLG++D++ G+ P+ + Q I Q +F+ +L D + G + GG + R +
Sbjct: 129 GIVGLGWKDLSIGSVDPVVVELKNQNKIEQAVFTFYLPFDDKHK--GYLTIGGIEDRFYE 186
Query: 246 GSHIYVPITEKGYWQIKV----GDILIENSSTGFCEDGCTAILDSGTSVLAGPT 295
G Y + YWQ+ + G++ +E + TAI+DSGTS + PT
Sbjct: 187 GQLTYEKLNHDLYWQVDLDLHFGNLTVEKA---------TAIVDSGTSSITAPT 231
>pdb|2ANL|A Chain A, X-Ray Crystal Structure Of The Aspartic Protease
Plasmepsin 4 From The Malarial Parasite Plasmodium
Malariae Bound To An Allophenylnorstatine Based
Inhibitor
pdb|2ANL|B Chain B, X-Ray Crystal Structure Of The Aspartic Protease
Plasmepsin 4 From The Malarial Parasite Plasmodium
Malariae Bound To An Allophenylnorstatine Based
Inhibitor
Length = 327
Score = 141 bits (356), Expect = 5e-34, Method: Compositional matrix adjust.
Identities = 84/236 (35%), Positives = 134/236 (56%), Gaps = 13/236 (5%)
Query: 68 DVVYLNNYLDAQYYGEIGIGSPPQSFSVVFDTGSSNLWVPSSKCLFSISCYLHSRYRARL 127
DV+ L++ + +YGE +G Q F ++FDTGS+NLWVPS KC SI C Y +
Sbjct: 4 DVIELDDVANLMFYGEGEVGDNHQKFMLIFDTGSANLWVPSKKCN-SIGCSTKHLYDSSK 62
Query: 128 SRTYTKIGVPCKIHYGSGQISGFFSQDNVKIGDMIIKDQEFVEVTK-EGLLP-FLALQFD 185
S++Y K G +I YGSG + GFFS+D V +G + + +F+EVT + L P + A +FD
Sbjct: 63 SKSYEKDGTKVEITYGSGTVRGFFSKDLVTLGYLSLP-YKFIEVTDTDDLEPLYTAAEFD 121
Query: 186 GILGLGFRDIAAGNATPLWYNMVRQGHISQKIFSLWLN-QDPNSEVGGEIIFGGFDWRHF 244
GILGLG++D++ G+ P+ + Q I Q +F+ +L D +S G + GG + + +
Sbjct: 122 GILGLGWKDLSIGSIDPIVVELKNQNKIDQALFTFYLPVHDKHS---GYLTIGGIEEKFY 178
Query: 245 RGSHIYVPITEKGYWQIKVGDILIENSSTGFCEDGCTAILDSGTSVLAGPTTVVAQ 300
G Y + +WQ+ + D+ +S + I+DSGTS + PT+ + +
Sbjct: 179 EGELTYEKLNHDLFWQVDL-DVNFGKTSM----EKANVIVDSGTSTITAPTSFINK 229
>pdb|1MIQ|A Chain A, Crystal Structure Of Proplasmepsin From The Human Malarial
Pathogen Plasmodium Vivax
pdb|1MIQ|B Chain B, Crystal Structure Of Proplasmepsin From The Human Malarial
Pathogen Plasmodium Vivax
Length = 375
Score = 136 bits (342), Expect = 2e-32, Method: Compositional matrix adjust.
Identities = 88/272 (32%), Positives = 145/272 (53%), Gaps = 27/272 (9%)
Query: 44 INTINAARLITKNEVHNRFNHPKA------------DVVYLNNYLDAQYYGEIGIGSPPQ 91
+ TI+ L KN + FN K+ DV+ L++ + +YGE +G Q
Sbjct: 18 LKTISKKNL--KNYIKETFNFFKSGYMKQNYLGSENDVIELDDVANIMFYGEGEVGDNHQ 75
Query: 92 SFSVVFDTGSSNLWVPSSKCLFSISCYLHSRYRARLSRTYTKIGVPCKIHYGSGQISGFF 151
F ++FDTGS+NLWVPS KC S C + + Y + S++Y K G I YGSG + GFF
Sbjct: 76 KFMLIFDTGSANLWVPSKKCN-SSGCSIKNLYDSSKSKSYEKDGTKVDITYGSGTVKGFF 134
Query: 152 SQDNVKIGDMIIKDQEFVEVTK-EGLLP-FLALQFDGILGLGFRDIAAGNATPLWYNMVR 209
S+D V +G + + +F+EVT + L P + +++FDGILGLG++D++ G+ P+ +
Sbjct: 135 SKDLVTLGHLSMP-YKFIEVTDTDDLEPIYSSVEFDGILGLGWKDLSIGSIDPIVVELKN 193
Query: 210 QGHISQKIFSLWLNQDPNSEV-GGEIIFGGFDWRHFRGSHIYVPITEKGYWQIKVGDILI 268
Q I +F+ +L P +V G + GG + + + G+ Y + YWQI + D+
Sbjct: 194 QNKIDNALFTFYL---PVHDVHAGYLTIGGIEEKFYEGNITYEKLNHDLYWQIDL-DVHF 249
Query: 269 ENSSTGFCEDGCTAILDSGTSVLAGPTTVVAQ 300
+ + I+DSGT+ + P+ + +
Sbjct: 250 GKQTM----EKANVIVDSGTTTITAPSEFLNK 277
>pdb|2BJU|A Chain A, Plasmepsin Ii Complexed With A Highly Active Achiral
Inhibitor
Length = 453
Score = 134 bits (338), Expect = 6e-32, Method: Compositional matrix adjust.
Identities = 81/240 (33%), Positives = 131/240 (54%), Gaps = 19/240 (7%)
Query: 68 DVVYLNNYLDAQYYGEIGIGSPPQSFSVVFDTGSSNLWVPSSKCLFSISCYLHSRYRARL 127
D + L ++ + +YG+ +G Q F+ + DTGS+NLWVPS KC + C Y +
Sbjct: 128 DNIELVDFQNIMFYGDAEVGDNQQPFTFILDTGSANLWVPSVKCT-TAGCLTKHLYDSSK 186
Query: 128 SRTYTKIGVPCKIHYGSGQISGFFSQDNVKIGDMIIKDQEFVEVTK-EGLLP-FLALQFD 185
SRTY K G +++Y SG +SGFFS+D V +G++ + +F+EV G P + A FD
Sbjct: 187 SRTYEKDGTKVEMNYVSGTVSGFFSKDLVTVGNLSLP-YKFIEVIDTNGFEPTYTASTFD 245
Query: 186 GILGLGFRDIAAGNATPLWYNMVRQGHISQKIFSLWLNQDPNSEVGGEIIFGGFDWRHFR 245
GILGLG++D++ G+ P+ + Q I +F+ +L + + G + GG + R +
Sbjct: 246 GILGLGWKDLSIGSVDPIVVELKNQNKIENALFTFYL--PVHDKHTGFLTIGGIEERFYE 303
Query: 246 GSHIYVPITEKGYWQI----KVGDILIENSSTGFCEDGCTAILDSGTSVLAGPTTVVAQI 301
G Y + YWQI VG+I++E ++ I+DSGTS + PT + ++
Sbjct: 304 GPLTYEKLNHDLYWQITLDAHVGNIMLEKAN---------CIVDSGTSAITVPTDFLNKM 354
>pdb|1LS5|A Chain A, Crystal Structure Of Plasmepsin Iv From P. Falciparum In
Complex With Pepstatin A
pdb|1LS5|B Chain B, Crystal Structure Of Plasmepsin Iv From P. Falciparum In
Complex With Pepstatin A
Length = 328
Score = 134 bits (337), Expect = 7e-32, Method: Compositional matrix adjust.
Identities = 81/237 (34%), Positives = 130/237 (54%), Gaps = 11/237 (4%)
Query: 66 KADVVYLNNYLDAQYYGEIGIGSPPQSFSVVFDTGSSNLWVPSSKCLFSISCYLHSRYRA 125
+ D + L++ + +YGE IG+ Q F +FDTGS+NLWVPS C SI C Y A
Sbjct: 2 ENDSIELDDVANLMFYGEGQIGTNKQPFMFIFDTGSANLWVPSVNCD-SIGCSTKHLYDA 60
Query: 126 RLSRTYTKIGVPCKIHYGSGQISGFFSQDNVKIGDMIIKDQEFVEVTK-EGLLP-FLALQ 183
S++Y K G +I YGSG + G+FS+D + +GD+ + +F+EVT + L P + +
Sbjct: 61 SASKSYEKDGTKVEISYGSGTVRGYFSKDVISLGDLSLP-YKFIEVTDADDLEPIYSGSE 119
Query: 184 FDGILGLGFRDIAAGNATPLWYNMVRQGHISQKIFSLWLNQDPNSEVGGEIIFGGFDWRH 243
FDGILGLG++D++ G+ P+ + +Q I +F+ +L + + G + GG +
Sbjct: 120 FDGILGLGWKDLSIGSIDPVVVELKKQNKIDNALFTFYLPV--HDKHVGYLTIGGIESDF 177
Query: 244 FRGSHIYVPITEKGYWQIKVGDILIENSSTGFCEDGCTAILDSGTSVLAGPTTVVAQ 300
+ G Y + YWQI + DI + A++DSGTS + PT+ + +
Sbjct: 178 YEGPLTYEKLNHDLYWQIDL-DIHFGK----YVMQKANAVVDSGTSTITAPTSFLNK 229
>pdb|1PFZ|A Chain A, Proplasmepsin Ii From Plasmodium Falciparum
pdb|1PFZ|B Chain B, Proplasmepsin Ii From Plasmodium Falciparum
pdb|1PFZ|C Chain C, Proplasmepsin Ii From Plasmodium Falciparum
pdb|1PFZ|D Chain D, Proplasmepsin Ii From Plasmodium Falciparum
Length = 380
Score = 134 bits (337), Expect = 8e-32, Method: Compositional matrix adjust.
Identities = 81/240 (33%), Positives = 131/240 (54%), Gaps = 19/240 (7%)
Query: 68 DVVYLNNYLDAQYYGEIGIGSPPQSFSVVFDTGSSNLWVPSSKCLFSISCYLHSRYRARL 127
D + L ++ + +YG+ +G Q F+ + DTGS+NLWVPS KC + C Y +
Sbjct: 55 DNIELVDFQNIMFYGDAEVGDNQQPFTFILDTGSANLWVPSVKCT-TAGCLTKHLYDSSK 113
Query: 128 SRTYTKIGVPCKIHYGSGQISGFFSQDNVKIGDMIIKDQEFVEV-TKEGLLP-FLALQFD 185
SRTY K G +++Y SG +SGFFS+D V +G++ + +F+EV G P + A FD
Sbjct: 114 SRTYEKDGTKVEMNYVSGTVSGFFSKDLVTVGNLSLP-YKFIEVIDTNGFEPTYTASTFD 172
Query: 186 GILGLGFRDIAAGNATPLWYNMVRQGHISQKIFSLWLNQDPNSEVGGEIIFGGFDWRHFR 245
GILGLG++D++ G+ P+ + Q I +F+ +L + + G + GG + R +
Sbjct: 173 GILGLGWKDLSIGSVDPIVVELKNQNKIENALFTFYL--PVHDKHTGFLTIGGIEERFYE 230
Query: 246 GSHIYVPITEKGYWQIK----VGDILIENSSTGFCEDGCTAILDSGTSVLAGPTTVVAQI 301
G Y + YWQI VG+I++E ++ I+DSGTS + PT + ++
Sbjct: 231 GPLTYEKLNHDLYWQITLDAHVGNIMLEKAN---------CIVDSGTSAITVPTDFLNKM 281
>pdb|1LF3|A Chain A, Crystal Structure Of Plasmepsin Ii From P Falciparum In
Complex With Inhibitor Eh58
pdb|1LF4|A Chain A, Structure Of Plasmepsin Ii
pdb|1XDH|A Chain A, Structure Of Plasmepsin Ii In Complex With Pepstatin A
pdb|1XDH|B Chain B, Structure Of Plasmepsin Ii In Complex With Pepstatin A
pdb|1W6H|A Chain A, Novel Plasmepsin Ii-inhibitor Complex
pdb|1W6H|B Chain B, Novel Plasmepsin Ii-inhibitor Complex
pdb|1W6I|A Chain A, Plasmepsin Ii-Pepstatin A Complex
pdb|1W6I|C Chain C, Plasmepsin Ii-Pepstatin A Complex
Length = 331
Score = 134 bits (336), Expect = 9e-32, Method: Compositional matrix adjust.
Identities = 81/240 (33%), Positives = 131/240 (54%), Gaps = 19/240 (7%)
Query: 68 DVVYLNNYLDAQYYGEIGIGSPPQSFSVVFDTGSSNLWVPSSKCLFSISCYLHSRYRARL 127
D + L ++ + +YG+ +G Q F+ + DTGS+NLWVPS KC + C Y +
Sbjct: 6 DNIELVDFQNIMFYGDAEVGDNQQPFTFILDTGSANLWVPSVKCT-TAGCLTKHLYDSSK 64
Query: 128 SRTYTKIGVPCKIHYGSGQISGFFSQDNVKIGDMIIKDQEFVEVTK-EGLLP-FLALQFD 185
SRTY K G +++Y SG +SGFFS+D V +G++ + +F+EV G P + A FD
Sbjct: 65 SRTYEKDGTKVEMNYVSGTVSGFFSKDLVTVGNLSLP-YKFIEVIDTNGFEPTYTASTFD 123
Query: 186 GILGLGFRDIAAGNATPLWYNMVRQGHISQKIFSLWLNQDPNSEVGGEIIFGGFDWRHFR 245
GILGLG++D++ G+ P+ + Q I +F+ +L + + G + GG + R +
Sbjct: 124 GILGLGWKDLSIGSVDPIVVELKNQNKIENALFTFYLPV--HDKHTGFLTIGGIEERFYE 181
Query: 246 GSHIYVPITEKGYWQIK----VGDILIENSSTGFCEDGCTAILDSGTSVLAGPTTVVAQI 301
G Y + YWQI VG+I++E ++ I+DSGTS + PT + ++
Sbjct: 182 GPLTYEKLNHDLYWQITLDAHVGNIMLEKAN---------CIVDSGTSAITVPTDFLNKM 232
>pdb|1SME|A Chain A, Plasmepsin Ii, A Hemoglobin-Degrading Enzyme From
Plasmodium Falciparum, In Complex With Pepstatin A
pdb|1SME|B Chain B, Plasmepsin Ii, A Hemoglobin-Degrading Enzyme From
Plasmodium Falciparum, In Complex With Pepstatin A
pdb|1ME6|A Chain A, Crystal Structure Of Plasmepsin Ii, An Aspartyl Protease
From Plasmodium Falciparum, In Complex With A
Statine-Based Inhibitor
pdb|1ME6|B Chain B, Crystal Structure Of Plasmepsin Ii, An Aspartyl Protease
From Plasmodium Falciparum, In Complex With A
Statine-Based Inhibitor
pdb|1XE5|A Chain A, Structure Of Plasmepsin Ii In Complex Of An Pepstatin
Analogue
pdb|1XE5|B Chain B, Structure Of Plasmepsin Ii In Complex Of An Pepstatin
Analogue
pdb|1XE6|A Chain A, Structure Of Plasmepsin Ii In Complex Of An Pepstatin
Analogue
pdb|1XE6|B Chain B, Structure Of Plasmepsin Ii In Complex Of An Pepstatin
Analogue
pdb|2IGX|A Chain A, Achiral, Cheap And Potent Inhibitors Of Plasmepsins Ii
pdb|2IGY|A Chain A, Achiral, Cheap And Potent Inhibitors Of Plasmepsins Ii
pdb|2IGY|B Chain B, Achiral, Cheap And Potent Inhibitors Of Plasmepsins Ii
pdb|2R9B|A Chain A, Structural Analysis Of Plasmepsin 2 From Plasmodium
Falciparum Complexed With A Peptide-Based Inhibitor
pdb|2R9B|B Chain B, Structural Analysis Of Plasmepsin 2 From Plasmodium
Falciparum Complexed With A Peptide-Based Inhibitor
Length = 329
Score = 134 bits (336), Expect = 1e-31, Method: Compositional matrix adjust.
Identities = 81/240 (33%), Positives = 131/240 (54%), Gaps = 19/240 (7%)
Query: 68 DVVYLNNYLDAQYYGEIGIGSPPQSFSVVFDTGSSNLWVPSSKCLFSISCYLHSRYRARL 127
D + L ++ + +YG+ +G Q F+ + DTGS+NLWVPS KC + C Y +
Sbjct: 4 DNIELVDFQNIMFYGDAEVGDNQQPFTFILDTGSANLWVPSVKCT-TAGCLTKHLYDSSK 62
Query: 128 SRTYTKIGVPCKIHYGSGQISGFFSQDNVKIGDMIIKDQEFVEVTK-EGLLP-FLALQFD 185
SRTY K G +++Y SG +SGFFS+D V +G++ + +F+EV G P + A FD
Sbjct: 63 SRTYEKDGTKVEMNYVSGTVSGFFSKDLVTVGNLSLP-YKFIEVIDTNGFEPTYTASTFD 121
Query: 186 GILGLGFRDIAAGNATPLWYNMVRQGHISQKIFSLWLNQDPNSEVGGEIIFGGFDWRHFR 245
GILGLG++D++ G+ P+ + Q I +F+ +L + + G + GG + R +
Sbjct: 122 GILGLGWKDLSIGSVDPIVVELKNQNKIENALFTFYLPV--HDKHTGFLTIGGIEERFYE 179
Query: 246 GSHIYVPITEKGYWQIK----VGDILIENSSTGFCEDGCTAILDSGTSVLAGPTTVVAQI 301
G Y + YWQI VG+I++E ++ I+DSGTS + PT + ++
Sbjct: 180 GPLTYEKLNHDLYWQITLDAHVGNIMLEKAN---------CIVDSGTSAITVPTDFLNKM 230
>pdb|1QS8|A Chain A, Crystal Structure Of The P. Vivax Aspartic Proteinase
Plasmepsin Complexed With The Inhibitor Pepstatin A
pdb|1QS8|B Chain B, Crystal Structure Of The P. Vivax Aspartic Proteinase
Plasmepsin Complexed With The Inhibitor Pepstatin A
Length = 329
Score = 133 bits (335), Expect = 1e-31, Method: Compositional matrix adjust.
Identities = 79/236 (33%), Positives = 132/236 (55%), Gaps = 13/236 (5%)
Query: 68 DVVYLNNYLDAQYYGEIGIGSPPQSFSVVFDTGSSNLWVPSSKCLFSISCYLHSRYRARL 127
DV+ L++ + +YGE +G Q F ++FDTGS+NLWVPS KC S C + + Y +
Sbjct: 6 DVIELDDVANIMFYGEGEVGDNHQKFMLIFDTGSANLWVPSKKCN-SSGCSIKNLYDSSK 64
Query: 128 SRTYTKIGVPCKIHYGSGQISGFFSQDNVKIGDMIIKDQEFVEVTK-EGLLP-FLALQFD 185
S++Y K G I YGSG + GFFS+D V +G + + +F+EV + L P + +++FD
Sbjct: 65 SKSYEKDGTKVDITYGSGTVKGFFSKDLVTLGHLSMP-YKFIEVIDTDDLEPIYSSVEFD 123
Query: 186 GILGLGFRDIAAGNATPLWYNMVRQGHISQKIFSLWLNQDPNSEV-GGEIIFGGFDWRHF 244
GILGLG++D++ G+ P+ + Q I +F+ +L P +V G + GG + + +
Sbjct: 124 GILGLGWKDLSIGSIDPIVVELKNQNKIDNALFTFYL---PVHDVHAGYLTIGGIEEKFY 180
Query: 245 RGSHIYVPITEKGYWQIKVGDILIENSSTGFCEDGCTAILDSGTSVLAGPTTVVAQ 300
G+ Y + YWQI + D+ + + I+DSGT+ + P+ + +
Sbjct: 181 EGNITYEKLNHDLYWQIDL-DVHFGKQTM----EKANVIVDSGTTTITAPSEFLNK 231
>pdb|3F9Q|A Chain A, Re-Refinement Of Uncomplexed Plasmepsin Ii From Plasmodium
Falciparum
Length = 329
Score = 132 bits (332), Expect = 3e-31, Method: Compositional matrix adjust.
Identities = 81/240 (33%), Positives = 130/240 (54%), Gaps = 19/240 (7%)
Query: 68 DVVYLNNYLDAQYYGEIGIGSPPQSFSVVFDTGSSNLWVPSSKCLFSISCYLHSRYRARL 127
D + L ++ + +YG+ +G Q F+ + DTGS+NLWVPS KC + C Y +
Sbjct: 4 DNIELVDFQNIMFYGDAEVGDNQQPFTFILDTGSANLWVPSVKCT-TAGCLTKHLYDSSK 62
Query: 128 SRTYTKIGVPCKIHYGSGQISGFFSQDNVKIGDMIIKDQEFVEVTK-EGLLP-FLALQFD 185
SRTY K G +++Y SG +SGFFS+D V +G++ + +F+EV G P + A FD
Sbjct: 63 SRTYEKDGTKVEMNYVSGTVSGFFSKDLVTVGNLSLP-YKFIEVIDTNGFEPTYTASTFD 121
Query: 186 GILGLGFRDIAAGNATPLWYNMVRQGHISQKIFSLWLNQDPNSEVGGEIIFGGFDWRHFR 245
GILGLG++D++ G+ P+ + Q I +F+ +L + + G + GG + R +
Sbjct: 122 GILGLGWKDLSIGSVDPIVVELKNQNKIENALFTFYLPV--HDKHTGFLTIGGIEERFYE 179
Query: 246 GSHIYVPITEKGYWQIK----VGDILIENSSTGFCEDGCTAILDSGTSVLAGPTTVVAQI 301
G Y + YWQI VG+I +E ++ I+DSGTS + PT + ++
Sbjct: 180 GPLTYEKLNHDLYWQITLDAHVGNISLEKAN---------CIVDSGTSAITVPTDFLNKM 230
>pdb|1M43|A Chain A, Crystal Structure Of Pmii In Complex With Pepstatin A To
2.4 A
pdb|1M43|B Chain B, Crystal Structure Of Pmii In Complex With Pepstatin A To
2.4 A
pdb|1LEE|A Chain A, Crystal Structure Of Plasmepsin From P. Falciparum In
Complex With Inhibitor Rs367
pdb|1LF2|A Chain A, Crystal Structure Of Plasmepsin Ii From P Falciparum In
Complex With Inhibitor Rs370
Length = 331
Score = 132 bits (331), Expect = 4e-31, Method: Compositional matrix adjust.
Identities = 81/240 (33%), Positives = 130/240 (54%), Gaps = 19/240 (7%)
Query: 68 DVVYLNNYLDAQYYGEIGIGSPPQSFSVVFDTGSSNLWVPSSKCLFSISCYLHSRYRARL 127
D + L ++ + +YG+ +G Q F+ + DTGS+NLWVPS KC + C Y +
Sbjct: 6 DNIELVDFQNIMFYGDAEVGDNQQPFTFILDTGSANLWVPSVKCT-TAGCLTKHLYDSSK 64
Query: 128 SRTYTKIGVPCKIHYGSGQISGFFSQDNVKIGDMIIKDQEFVEVTK-EGLLP-FLALQFD 185
SRTY K G +++Y SG +SGFFS+D V +G++ + +F+EV G P + A FD
Sbjct: 65 SRTYEKDGTKVEMNYVSGTVSGFFSKDLVTVGNLSLP-YKFIEVIDTNGFEPTYTASTFD 123
Query: 186 GILGLGFRDIAAGNATPLWYNMVRQGHISQKIFSLWLNQDPNSEVGGEIIFGGFDWRHFR 245
GILGLG++D++ G+ P+ + Q I +F+ +L + + G + GG + R +
Sbjct: 124 GILGLGWKDLSIGSVDPIVVELKNQNKIENALFTFYLPV--HDKHTGFLTIGGIEERFYE 181
Query: 246 GSHIYVPITEKGYWQIK----VGDILIENSSTGFCEDGCTAILDSGTSVLAGPTTVVAQI 301
G Y + YWQI VG+I +E ++ I+DSGTS + PT + ++
Sbjct: 182 GPLTYEKLNHDLYWQITLDAHVGNISLEKAN---------CIVDSGTSAITVPTDFLNKM 232
>pdb|3APR|E Chain E, Binding Of A Reduced Peptide Inhibitor To The Aspartic
Proteinase From Rhizopus Chinensis. Implications For A
Mechanism Of Action
pdb|4APR|E Chain E, Structures Of Complexes Of Rhizopuspepsin With Pepstatin
And Other Statine-Containing Inhibitors
pdb|5APR|E Chain E, Structures Of Complexes Of Rhizopuspepsin With Pepstatin
And Other Statine-Containing Inhibitors
pdb|6APR|E Chain E, Structures Of Complexes Of Rhizopuspepsin With Pepstatin
And Other Statine-Containing Inhibitors
pdb|2APR|A Chain A, Structure And Refinement At 1.8 Angstroms Resolution Of
The Aspartic Proteinase From Rhizopus Chinensis
Length = 325
Score = 130 bits (326), Expect = 2e-30, Method: Compositional matrix adjust.
Identities = 95/253 (37%), Positives = 138/253 (54%), Gaps = 16/253 (6%)
Query: 77 DAQYYGEIGIGSPPQSFSVVFDTGSSNLWVPSSKCLFSISCYLHSRYRARLSRTYTKIGV 136
D +YYG++ IG+P + F++ FDTGSS+LW+ S+ C S ++Y S TY G
Sbjct: 14 DIEYYGQVTIGTPGKKFNLDFDTGSSDLWIASTLCTNCGSG--QTKYDPNQSSTYQADGR 71
Query: 137 PCKIHYGSG-QISGFFSQDNVKIGDMIIKDQEFVEVTKEGLLPFLALQFDGILGLGFRDI 195
I YG G SG ++DNV +G ++IK Q +E+ K F + DG+LGLGF I
Sbjct: 72 TWSISYGDGSSASGILAKDNVNLGGLLIKGQT-IELAKREAASFASGPNDGLLGLGFDTI 130
Query: 196 AA--GNATPLWYNMVRQGHISQKIFSLWLNQDPNSEVGGEIIFGGFDWRHFRGSHIYVPI 253
G TP+ N++ QG IS+ IF ++L + N GE IFGG+D F+GS VPI
Sbjct: 131 TTVRGVKTPM-DNLISQGLISRPIFGVYLGKAKNGGG-GEYIFGGYDSTKFKGSLTTVPI 188
Query: 254 -TEKGYWQIKVGDILIENSSTGFCEDGCTAILDSGTSVLAGPTTVVAQINHAIGA----E 308
+G+W I V + S+ DG ILD+GT++L P + A + A GA +
Sbjct: 189 DNSRGWWGITVDRATVGTSTVASSFDG---ILDTGTTLLILPNNIAASVARAYGASDNGD 245
Query: 309 GIVSMQCKTVVFE 321
G ++ C T F+
Sbjct: 246 GTYTISCDTSAFK 258
>pdb|1UH7|A Chain A, Crystal Structure Of Rhizopuspepsin At Ph 4.6
pdb|1UH8|A Chain A, Crystal Structure Of Rhizopuspepsin At Ph 8.0
pdb|1UH9|A Chain A, Crystal Structure Of Rhizopuspepsin At Ph 7.0
Length = 325
Score = 129 bits (323), Expect = 3e-30, Method: Compositional matrix adjust.
Identities = 95/254 (37%), Positives = 139/254 (54%), Gaps = 18/254 (7%)
Query: 77 DAQYYGEIGIGSPPQSFSVVFDTGSSNLWVPSSKCLFSISC-YLHSRYRARLSRTYTKIG 135
D +YYG++ IG+P + F++ FDTGSS+LW+ S+ C +C ++Y S TY G
Sbjct: 14 DIEYYGQVTIGTPGKKFNLDFDTGSSDLWIASTLC---TNCGSRQTKYDPNQSSTYQADG 70
Query: 136 VPCKIHYGSG-QISGFFSQDNVKIGDMIIKDQEFVEVTKEGLLPFLALQFDGILGLGFRD 194
I YG G SG ++DNV +G ++IK Q +E+ K F + DG+LGLGF
Sbjct: 71 RTWSISYGDGSSASGILAKDNVNLGGLLIKGQT-IELAKREAASFASGPNDGLLGLGFDT 129
Query: 195 IAA--GNATPLWYNMVRQGHISQKIFSLWLNQDPNSEVGGEIIFGGFDWRHFRGSHIYVP 252
I G TP+ N++ QG IS+ IF ++L + N GE IFGG+D F+GS VP
Sbjct: 130 ITTVRGVKTPM-DNLISQGLISRPIFGVYLGKAKNGGG-GEYIFGGYDSTKFKGSLTTVP 187
Query: 253 I-TEKGYWQIKVGDILIENSSTGFCEDGCTAILDSGTSVLAGPTTVVAQINHAIGA---- 307
I +G+W I V + S+ DG ILD+GT++L P + A + A GA
Sbjct: 188 IDNSRGWWGITVDRATVGTSTVASSFDG---ILDTGTTLLILPNNIAASVARAYGASDNG 244
Query: 308 EGIVSMQCKTVVFE 321
+G ++ C T F+
Sbjct: 245 DGTYTISCDTSRFK 258
>pdb|1LYA|B Chain B, Crystal Structures Of Native And Inhibited Forms Of Human
Cathepsin D: Implications For Lysosomal Targeting And
Drug Design
pdb|1LYA|D Chain D, Crystal Structures Of Native And Inhibited Forms Of Human
Cathepsin D: Implications For Lysosomal Targeting And
Drug Design
pdb|1LYW|B Chain B, Cathepsin D At Ph 7.5
pdb|1LYW|D Chain D, Cathepsin D At Ph 7.5
pdb|1LYW|F Chain F, Cathepsin D At Ph 7.5
pdb|1LYW|H Chain H, Cathepsin D At Ph 7.5
pdb|1LYB|B Chain B, Crystal Structures Of Native And Inhibited Forms Of Human
Cathepsin D: Implications For Lysosomal Targeting And
Drug Design
pdb|1LYB|D Chain D, Crystal Structures Of Native And Inhibited Forms Of Human
Cathepsin D: Implications For Lysosomal Targeting And
Drug Design
Length = 241
Score = 128 bits (322), Expect = 5e-30, Method: Compositional matrix adjust.
Identities = 60/164 (36%), Positives = 106/164 (64%), Gaps = 5/164 (3%)
Query: 159 GDMIIKDQEFVEVTKEGLLPFLALQFDGILGLGFRDIAAGNATPLWYNMVRQGHISQKIF 218
G + ++ Q F E TK+ + F+A +FDGILG+ + I+ N P++ N+++Q + Q IF
Sbjct: 1 GGVKVERQVFGEATKQPGITFIAAKFDGILGMAYPRISVNNVLPVFDNLMQQKLVDQNIF 60
Query: 219 SLWLNQDPNSEVGGEIIFGGFDWRHFRGSHIYVPITEKGYWQIKVGDILIENSSTGFCED 278
S +L++DP+++ GGE++ GG D ++++GS Y+ +T K YWQ+ + + + + T C++
Sbjct: 61 SFYLSRDPDAQPGGELMLGGTDSKYYKGSLSYLNVTRKAYWQVHLDQVEVASGLT-LCKE 119
Query: 279 GCTAILDSGTSVLAGPTTVVAQINHAIGA----EGIVSMQCKTV 318
GC AI+D+GTS++ GP V ++ AIGA +G + C+ V
Sbjct: 120 GCEAIVDTGTSLMVGPVDEVRELQKAIGAVPLIQGEYMIPCEKV 163
>pdb|3QVC|A Chain A, Crystal Structure Of Histo-Aspartic Protease (Hap) Zymogen
From Plasmodium Falciparum
pdb|3QVI|A Chain A, Crystal Structure Of Kni-10395 Bound Histo-Aspartic
Protease (Hap) From Plasmodium Falciparum
pdb|3QVI|B Chain B, Crystal Structure Of Kni-10395 Bound Histo-Aspartic
Protease (Hap) From Plasmodium Falciparum
pdb|3QVI|C Chain C, Crystal Structure Of Kni-10395 Bound Histo-Aspartic
Protease (Hap) From Plasmodium Falciparum
pdb|3QVI|D Chain D, Crystal Structure Of Kni-10395 Bound Histo-Aspartic
Protease (Hap) From Plasmodium Falciparum
Length = 451
Score = 125 bits (314), Expect = 3e-29, Method: Compositional matrix adjust.
Identities = 87/275 (31%), Positives = 136/275 (49%), Gaps = 11/275 (4%)
Query: 29 SHGLLRIQLKKRQLGINTINAARLITKNEVHNRFNHPKADVVYLNNYLDAQYYGEIGIGS 88
S+ L +K+ +L + +L K + + D V L + + +GE +G
Sbjct: 88 SYDRLMKTIKEHKLKNYIKESVKLFNKGLTKKSYLGSEFDNVELKDLANVLSFGEAKLGD 147
Query: 89 PPQSFSVVFDTGSSNLWVPSSKCLFSISCYLHSRYRARLSRTYTKIGVPCKIHYGSGQIS 148
Q F+ +F T SSN+WVPS KC S SC + Y + S+TY K P K+ +G IS
Sbjct: 148 NGQKFNFLFHTASSNVWVPSIKCT-SESCESKNHYDSSKSKTYEKDDTPVKLTSKAGTIS 206
Query: 149 GFFSQDNVKIGDMIIKDQEFVEVTK-EGLLPFLAL-QFDGILGLGFRDIAAGNATPLWYN 206
G FS+D V IG + + +F+E+T+ G PF + DG+ GLG++D++ G+ P
Sbjct: 207 GIFSKDLVTIGKLSVP-YKFIEMTEIVGFEPFYSESDVDGVFGLGWKDLSIGSIDPYIVE 265
Query: 207 MVRQGHISQKIFSLWLNQDPNSEVGGEIIFGGFDWRHFRGSHIYVPITEKGYWQIKVGDI 266
+ Q I Q ++S++L P ++ G + GG + R F G Y + WQ+ + D+
Sbjct: 266 LKTQNKIEQAVYSIYL--PPENKNKGYLTIGGIEERFFDGPLNYEKLNHDLMWQVDL-DV 322
Query: 267 LIENSSTGFCEDGCTAILDSGTSVLAGPTTVVAQI 301
N S+ ILDS TSV+ PT Q
Sbjct: 323 HFGNVSSK----KANVILDSATSVITVPTEFFNQF 353
>pdb|3FNS|A Chain A, Crystal Structure Of Histo-Aspartic Protease (Hap) From
Plasmodium Falciparum
pdb|3FNS|B Chain B, Crystal Structure Of Histo-Aspartic Protease (Hap) From
Plasmodium Falciparum
pdb|3FNT|A Chain A, Crystal Structure Of Pepstatin A Bound Histo-aspartic
Protease (hap) From Plasmodium Falciparum
pdb|3FNU|A Chain A, Crystal Structure Of Kni-10006 Bound Histo-Aspartic
Protease (Hap) From Plasmodium Falciparum
pdb|3FNU|B Chain B, Crystal Structure Of Kni-10006 Bound Histo-Aspartic
Protease (Hap) From Plasmodium Falciparum
pdb|3FNU|C Chain C, Crystal Structure Of Kni-10006 Bound Histo-Aspartic
Protease (Hap) From Plasmodium Falciparum
pdb|3FNU|D Chain D, Crystal Structure Of Kni-10006 Bound Histo-Aspartic
Protease (Hap) From Plasmodium Falciparum
Length = 332
Score = 122 bits (307), Expect = 2e-28, Method: Compositional matrix adjust.
Identities = 81/236 (34%), Positives = 122/236 (51%), Gaps = 11/236 (4%)
Query: 68 DVVYLNNYLDAQYYGEIGIGSPPQSFSVVFDTGSSNLWVPSSKCLFSISCYLHSRYRARL 127
D V L + + +GE +G Q F+ +F T SSN+WVPS KC S SC + Y +
Sbjct: 8 DNVELKDLANVLSFGEAKLGDNGQKFNFLFHTASSNVWVPSIKCT-SESCESKNHYDSSK 66
Query: 128 SRTYTKIGVPCKIHYGSGQISGFFSQDNVKIGDMIIKDQEFVEVTK-EGLLPFLAL-QFD 185
S+TY K P K+ +G ISG FS+D V IG + + +F+E+T+ G PF + D
Sbjct: 67 SKTYEKDDTPVKLTSKAGTISGIFSKDLVTIGKLSVP-YKFIEMTEIVGFEPFYSESDVD 125
Query: 186 GILGLGFRDIAAGNATPLWYNMVRQGHISQKIFSLWLNQDPNSEVGGEIIFGGFDWRHFR 245
G+ GLG++D++ G+ P + Q I Q ++S++L P ++ G + GG + R F
Sbjct: 126 GVFGLGWKDLSIGSIDPYIVELKTQNKIEQAVYSIYL--PPENKNKGYLTIGGIEERFFD 183
Query: 246 GSHIYVPITEKGYWQIKVGDILIENSSTGFCEDGCTAILDSGTSVLAGPTTVVAQI 301
G Y + WQ+ + D+ N S+ ILDS TSV+ PT Q
Sbjct: 184 GPLNYEKLNHDLMWQVDL-DVHFGNVSSK----KANVILDSATSVITVPTEFFNQF 234
>pdb|1LYW|A Chain A, Cathepsin D At Ph 7.5
pdb|1LYW|C Chain C, Cathepsin D At Ph 7.5
pdb|1LYW|E Chain E, Cathepsin D At Ph 7.5
pdb|1LYW|G Chain G, Cathepsin D At Ph 7.5
pdb|1LYA|A Chain A, Crystal Structures Of Native And Inhibited Forms Of Human
Cathepsin D: Implications For Lysosomal Targeting And
Drug Design
pdb|1LYA|C Chain C, Crystal Structures Of Native And Inhibited Forms Of Human
Cathepsin D: Implications For Lysosomal Targeting And
Drug Design
pdb|1LYB|A Chain A, Crystal Structures Of Native And Inhibited Forms Of Human
Cathepsin D: Implications For Lysosomal Targeting And
Drug Design
pdb|1LYB|C Chain C, Crystal Structures Of Native And Inhibited Forms Of Human
Cathepsin D: Implications For Lysosomal Targeting And
Drug Design
Length = 97
Score = 117 bits (293), Expect = 1e-26, Method: Compositional matrix adjust.
Identities = 55/88 (62%), Positives = 66/88 (75%), Gaps = 1/88 (1%)
Query: 72 LNNYLDAQYYGEIGIGSPPQSFSVVFDTGSSNLWVPSSKC-LFSISCYLHSRYRARLSRT 130
L NY+DAQYYGEIGIG+PPQ F+VVFDTGSSNLWVPS C L I+C++H +Y + S T
Sbjct: 7 LKNYMDAQYYGEIGIGTPPQCFTVVFDTGSSNLWVPSIHCKLLDIACWIHHKYNSDKSST 66
Query: 131 YTKIGVPCKIHYGSGQISGFFSQDNVKI 158
Y K G IHYGSG +SG+ SQD V +
Sbjct: 67 YVKNGTSFDIHYGSGSLSGYLSQDTVSV 94
>pdb|2QZW|A Chain A, Secreted Aspartic Proteinase (Sap) 1 From Candida Albicans
pdb|2QZW|B Chain B, Secreted Aspartic Proteinase (Sap) 1 From Candida Albicans
Length = 341
Score = 99.8 bits (247), Expect = 2e-21, Method: Compositional matrix adjust.
Identities = 84/250 (33%), Positives = 118/250 (47%), Gaps = 25/250 (10%)
Query: 70 VYLNNYLDAQYYGEIGIGSPPQSFSVVFDTGSSNLWVPSSKCLFSIS--------CYLHS 121
V LNN Y +I IGS Q F+V+ DTGSS+LWVP + C
Sbjct: 5 VTLNNE-HVSYAADITIGSNKQKFNVIVDTGSSDLWVPDASVTCDKPRPGQSADFCKGKG 63
Query: 122 RYRARLSRTYTKIGVPCKIHYGSGQIS-GFFSQDNVKIGDMIIKDQEFVEVTKEGLLPFL 180
Y + S T +G P I YG G S G +D V G I Q F ++TK +
Sbjct: 64 IYTPKSSTTSQNLGTPFYIGYGDGSSSQGTLYKDTVGFGGASITKQVFADITKTSIP--- 120
Query: 181 ALQFDGILGLGFR-DIAAGNATPLWYNMVRQGHISQKIFSLWLNQDPNSEVGGEIIFGGF 239
GILG+G++ + AAG+ + + QG I++ +SL+LN PN+ G+IIFGG
Sbjct: 121 ----QGILGIGYKTNEAAGDYDNVPVTLKNQGVIAKNAYSLYLNS-PNAAT-GQIIFGGV 174
Query: 240 DWRHFRGSHIYVPITEKGYWQIKVGDILIENSSTGFCEDG-CTAILDSGTSVLAGPTTVV 298
D + GS I VP+T +I + + + G +G +LDSGT++ V
Sbjct: 175 DKAKYSGSLIAVPVTSDRELRITLNSL----KAVGKNINGNIDVLLDSGTTITYLQQDVA 230
Query: 299 AQINHAIGAE 308
I A AE
Sbjct: 231 QDIIDAFQAE 240
>pdb|3FV3|A Chain A, Secreted Aspartic Protease 1 From Candida Parapsilosis In
Complex With Pepstatin A
pdb|3FV3|B Chain B, Secreted Aspartic Protease 1 From Candida Parapsilosis In
Complex With Pepstatin A
pdb|3FV3|C Chain C, Secreted Aspartic Protease 1 From Candida Parapsilosis In
Complex With Pepstatin A
pdb|3FV3|D Chain D, Secreted Aspartic Protease 1 From Candida Parapsilosis In
Complex With Pepstatin A
pdb|3FV3|E Chain E, Secreted Aspartic Protease 1 From Candida Parapsilosis In
Complex With Pepstatin A
pdb|3FV3|F Chain F, Secreted Aspartic Protease 1 From Candida Parapsilosis In
Complex With Pepstatin A
pdb|3FV3|G Chain G, Secreted Aspartic Protease 1 From Candida Parapsilosis In
Complex With Pepstatin A
pdb|3FV3|H Chain H, Secreted Aspartic Protease 1 From Candida Parapsilosis In
Complex With Pepstatin A
pdb|3TNE|A Chain A, The Crystal Structure Of Protease Sapp1p From Candida
Parapsilosis In Complex With The Hiv Protease Inhibitor
Ritonavir
pdb|3TNE|B Chain B, The Crystal Structure Of Protease Sapp1p From Candida
Parapsilosis In Complex With The Hiv Protease Inhibitor
Ritonavir
Length = 339
Score = 99.0 bits (245), Expect = 4e-21, Method: Compositional matrix adjust.
Identities = 74/242 (30%), Positives = 114/242 (47%), Gaps = 25/242 (10%)
Query: 80 YYGEIGIGSPPQSFSVVFDTGSSNLWVPSS--KCLFSISCYLHSRYRARLSRTYTKIGVP 137
Y ++ +GS Q +V+ DTGSS+ WV S +C + C + S +Y +G
Sbjct: 14 YASKVSVGSNKQQQTVIIDTGSSDFWVVDSNAQCGKGVDCKSSGTFTPSSSSSYKNLGAA 73
Query: 138 CKIHYGSGQIS-GFFSQDNVKIGDMIIKDQEFVEVTKEGLLPFLALQFDGILGLGFR--- 193
I YG G S G + +D V I + I Q+ +VT+ + GILG+G+
Sbjct: 74 FTIRYGDGSTSQGTWGKDTVTINGVSITGQQIADVTQTSVDQ-------GILGIGYTSNE 126
Query: 194 ---DIAAGNATPLWYN----MVRQGHISQKIFSLWLNQDPNSEVGGEIIFGGFDWRHFRG 246
D + TP + N + +QG I +SL+LN P++E G IIFGG D + G
Sbjct: 127 AVYDTSGRQTTPNYDNVPVTLKKQGKIRTNAYSLYLNS-PSAET-GTIIFGGVDNAKYSG 184
Query: 247 SHIYVPITEKGYWQIKVGDILIENSSTGFCEDGCTAILDSGTSVLAGPTTVVAQINHAIG 306
+ +T I + + ++ SS F G A+LDSGT++ P+ AQ+ G
Sbjct: 185 KLVAEQVTSSQALTISLASVNLKGSSFSF---GDGALLDSGTTLTYFPSDFAAQLADKAG 241
Query: 307 AE 308
A
Sbjct: 242 AR 243
>pdb|1EAG|A Chain A, Secreted Aspartic Proteinase (Sap2) From Candida Albicans
Complexed With A70450
pdb|3PVK|A Chain A, Secreted Aspartic Protease 2 In Complex With Benzamidine
pdb|3Q70|A Chain A, Secreted Aspartic Protease In Complex With Ritonavir
Length = 342
Score = 97.4 bits (241), Expect = 9e-21, Method: Compositional matrix adjust.
Identities = 72/221 (32%), Positives = 109/221 (49%), Gaps = 21/221 (9%)
Query: 80 YYGEIGIGSPPQSFSVVFDTGSSNLWVP--SSKCLFSIS------CYLHSRYRARLSRTY 131
Y +I +GS Q +V+ DTGSS+LWVP + C + S C Y S
Sbjct: 14 YAADITVGSNNQKLNVIVDTGSSDLWVPDVNVDCQVTYSDQTADFCKQKGTYDPSGSSAS 73
Query: 132 TKIGVPCKIHYGSGQIS-GFFSQDNVKIGDMIIKDQEFVEVTKEGLLPFLALQFDGILGL 190
+ P KI YG G S G +D V G + IK+Q +V + GILG+
Sbjct: 74 QDLNTPFKIGYGDGSSSQGTLYKDTVGFGGVSIKNQVLADVDSTSIDQ-------GILGV 126
Query: 191 GFR-DIAAGNATPLWYNMVRQGHISQKIFSLWLNQDPNSEVGGEIIFGGFDWRHFRGSHI 249
G++ + A G+ + + +QG I++ +SL+LN P++ G+IIFGG D + GS I
Sbjct: 127 GYKTNEAGGSYDNVPVTLKKQGVIAKNAYSLYLNS-PDAAT-GQIIFGGVDNAKYSGSLI 184
Query: 250 YVPITEKGYWQIKVGDILIENSSTGFCEDGCTAILDSGTSV 290
+P+T +I +G +E S D +LDSGT++
Sbjct: 185 ALPVTSDRELRISLGS--VEVSGKTINTDNVDVLLDSGTTI 223
>pdb|2QZX|A Chain A, Secreted Aspartic Proteinase (Sap) 5 From Candida Albicans
pdb|2QZX|B Chain B, Secreted Aspartic Proteinase (Sap) 5 From Candida Albicans
Length = 342
Score = 97.4 bits (241), Expect = 1e-20, Method: Compositional matrix adjust.
Identities = 80/272 (29%), Positives = 125/272 (45%), Gaps = 40/272 (14%)
Query: 80 YYGEIGIGSPPQSFSVVFDTGSSNLWVPSSKCLFSIS--------CYLHSRYRARLSRTY 131
Y +I +GS Q +V+ DTGSS+LW+P S + C Y SRT
Sbjct: 14 YTADITVGSDNQKLNVIVDTGSSDLWIPDSNVICIPKWRGDKGDFCKSAGSYSPASSRTS 73
Query: 132 TKIGVPCKIHYGSGQIS-GFFSQDNVKIGDMIIKDQEFVEVTKEGLLPFLALQFDGILGL 190
+ I YG G + G +D V IG + ++DQ F V + GILG+
Sbjct: 74 QNLNTRFDIKYGDGSYAKGKLYKDTVGIGGVSVRDQLFANV-------WSTSARKGILGI 126
Query: 191 GFRDIAAGNATPLWYN-----MVRQGHISQKIFSLWLNQDPNSEVGGEIIFGGFDWRHFR 245
GF+ +G AT Y+ + QG I + +SL+LN S G+IIFGG D +
Sbjct: 127 GFQ---SGEATEFDYDNLPISLRNQGIIGKAAYSLYLNSAEAST--GQIIFGGIDKAKYS 181
Query: 246 GSHIYVPITEKGYWQIKVGDILIENSSTGFCEDGCTAILDSGTSVLAGPTTVVAQINHAI 305
GS + +PIT + + + + + + + +LDSGT++ ++V I +AI
Sbjct: 182 GSLVDLPITSEKKLTVGLRSVNVRGRN---VDANTNVLLDSGTTISYFTRSIVRNILYAI 238
Query: 306 GAE--------GIVSMQCK---TVVFEYGNMI 326
GA+ + CK T+ F++GN +
Sbjct: 239 GAQMKFDSAGNKVYVADCKTSGTIDFQFGNNL 270
>pdb|1ZAP|A Chain A, Secreted Aspartic Protease From C. Albicans
Length = 342
Score = 95.9 bits (237), Expect = 3e-20, Method: Compositional matrix adjust.
Identities = 72/221 (32%), Positives = 107/221 (48%), Gaps = 21/221 (9%)
Query: 80 YYGEIGIGSPPQSFSVVFDTGSSNLWVPSSK--CLFSIS------CYLHSRYRARLSRTY 131
Y +I +GS Q +V+ DTGSS+LWVP C + S C Y S
Sbjct: 14 YAADITVGSNNQKLNVIVDTGSSDLWVPDVNIDCQVTYSDQTADFCKQKGTYDPSGSSAS 73
Query: 132 TKIGVPCKIHYGSGQIS-GFFSQDNVKIGDMIIKDQEFVEVTKEGLLPFLALQFDGILGL 190
+ P I YG G S G +D V G + IK+Q +V + GILG+
Sbjct: 74 QDLNTPFSIGYGDGSSSQGTLYKDTVGFGGVSIKNQVLADVDSTSIDQ-------GILGV 126
Query: 191 GFR-DIAAGNATPLWYNMVRQGHISQKIFSLWLNQDPNSEVGGEIIFGGFDWRHFRGSHI 249
G++ + A G+ + + +QG I++ +SL+LN P+S G+IIFGG D + GS I
Sbjct: 127 GYKTNEAGGSYDNVPVTLKKQGVIAKNAYSLYLNS-PDSAT-GQIIFGGVDNAKYSGSLI 184
Query: 250 YVPITEKGYWQIKVGDILIENSSTGFCEDGCTAILDSGTSV 290
+P+T +I +G +E S D +LDSGT++
Sbjct: 185 ALPVTSDRELRISLGS--VEVSGKTINTDNVDVLLDSGTTI 223
>pdb|2H6S|A Chain A, Secreted Aspartic Proteinase (sap) 3 From Candida Albicans
pdb|2H6T|A Chain A, Secreted Aspartic Proteinase (Sap) 3 From Candida Albicans
Complexed With Pepstatin A
Length = 340
Score = 93.2 bits (230), Expect = 2e-19, Method: Compositional matrix adjust.
Identities = 69/220 (31%), Positives = 103/220 (46%), Gaps = 21/220 (9%)
Query: 80 YYGEIGIGSPPQSFSVVFDTGSSNLWVPSSKCLFSIS-------CYLHSRYRARLSRTYT 132
Y +I +GS Q +VV DTGSS+LWVP S+ C Y S +
Sbjct: 14 YASDITVGSNKQKLTVVIDTGSSDLWVPDSQVSCQAGQGQDPNFCKNEGTYSPSSSSSSQ 73
Query: 133 KIGVPCKIHYGSGQIS-GFFSQDNVKIGDMIIKDQEFVEVTKEGLLPFLALQFDGILGLG 191
+ P I YG G S G + +D + G + I Q+F +VT + GILG+G
Sbjct: 74 NLNSPFSIEYGDGTTSQGTWYKDTIGFGGISITKQQFADVTSTSVDQ-------GILGIG 126
Query: 192 FRD-IAAGNATPLWYNMVRQGHISQKIFSLWLNQDPNSEVGGEIIFGGFDWRHFRGSHIY 250
++ A GN + + QG IS+ +SL+LN G+IIFGG D + G+ I
Sbjct: 127 YKTHEAEGNYDNVPVTLKNQGIISKNAYSLYLN--SRQATSGQIIFGGVDNAKYSGTLIA 184
Query: 251 VPITEKGYWQIKVGDILIENSSTGFCEDGCTAILDSGTSV 290
+P+T +I + + + S D +LDSGT++
Sbjct: 185 LPVTSDNELRIHLNTVKVAGQSINADVD---VLLDSGTTI 221
>pdb|2RMP|A Chain A, Rmp-Pepstatin A Complex
pdb|2ASI|A Chain A, Aspartic Proteinase
Length = 361
Score = 92.4 bits (228), Expect = 4e-19, Method: Compositional matrix adjust.
Identities = 66/251 (26%), Positives = 112/251 (44%), Gaps = 18/251 (7%)
Query: 79 QYYGEIGIGSPPQSFSVVFDTGSSNLWVPSSKCLFSISCYLHSRYRARLSRTYTKIGVPC 138
+Y + IG+P Q F ++FDTGSS+ WVP C S C + S T+
Sbjct: 19 EYAIPVSIGTPGQDFLLLFDTGSSDTWVPHKGCTKSEGCVGSRFFDPSASSTFKATNYNL 78
Query: 139 KIHYGSGQISGFFSQDNVKIGDMIIKDQ-----EFVEVTKEGLLPFLALQFDGILGLGFR 193
I YG+G +G + +D++ IGD+ + Q + V P + DG+ G +
Sbjct: 79 NITYGTGGANGLYFEDSIAIGDITVTKQILAYVDNVRGPTAEQSPNADIFLDGLFGAAYP 138
Query: 194 DIAAGNA------TPLWYNMVRQGHISQKIFSLWLNQDPNSEVGGEIIFGGFDWRHFRGS 247
D A A + N+ +QG IS +FS+++N + + GE++FGG + G
Sbjct: 139 DNTAMEAEYGSTYNTVHVNLYKQGLISSPLFSVYMNTNSGT---GEVVFGGVNNTLLGGD 195
Query: 248 HIYVPITEK--GY--WQIKVGDILIENSSTGFCEDGCTAILDSGTSVLAGPTTVVAQINH 303
Y + + GY W V I ++ S+ +D+GT+ P++ ++I
Sbjct: 196 IAYTDVMSRYGGYYFWDAPVTGITVDGSAAVRFSRPQAFTIDTGTNFFIMPSSAASKIVK 255
Query: 304 AIGAEGIVSMQ 314
A + + Q
Sbjct: 256 AALPDATETQQ 266
>pdb|2VIE|A Chain A, Human Bace-1 In Complex With
N-((1s,2r)-1-Benzyl-2-Hydroxy-
3-((1,1,
5-Trimethylhexyl)amino)propyl)-3-(Ethylamino)-5-(2-
Oxopyrrolidin-1-Yl)benzamide
pdb|2VIJ|A Chain A, Human Bace-1 In Complex With
3-(1,1-Dioxidotetrahydro-2h-1,
2-Thiazin-2-Yl)-5-(Ethylamino)-N-((1s,2r)-2-Hydroxy-1-(
Phenylmethyl)-3-(1,2,3,4-Tetrahydro-1-Naphthalenylamino)
Propyl)benzamide
pdb|2VIY|A Chain A, Human Bace-1 In Complex With N-((1s,2r)-3-(((1s)-2-(
Cyclohexylamino)-1-Methyl-2-Oxoethyl)amino)-2-Hydroxy-1-
( Phenylmethyl)propyl)-3-(Pentylsulfonyl)benzamide
pdb|2VIZ|A Chain A, Human Bace-1 In Complex With N-((1s,2r)-3-(((1s)-2-(
Cyclohexylamino)-1-methyl-2-oxoethyl)amino)-2-hydroxy-1-
(
Phenylmethyl)propyl)-3-(2-oxo-1-pyrrolidinyl)-5-
(propyloxy) Benzamide
pdb|2VJ6|A Chain A, Human Bace-1 In Complex With N-((1s,2r)-3-(((1s)-2-(
Cyclohexylamino)-1-Methyl-2-Oxoethyl)amino)-2-Hydroxy-1-
( Phenylmethyl)propyl)-3-(Ethylamino)-5-(2-Oxo-1-
Pyrrolidinyl)benzamide
pdb|2VJ7|A Chain A, Human Bace-1 In Complex With 3-(Ethylamino)-N-((1s,2r)-2-
Hydroxy-1-(Phenylmethyl)-3-(((3-(Trifluoromethyl)phenyl)
Methyl)amino)propyl)-5-(2-Oxo-1-Pyrrolidinyl)benzamide
pdb|2VJ9|A Chain A, Human Bace-1 In Complex With
N-((1s,2r)-3-(Cyclohexylamino)-
2-Hydroxy-1-(Phenylmethyl)propyl)-3-(Ethylamino)-5-(2-
Oxo- 1-Pyrrolidinyl)benzamide
pdb|2VNM|A Chain A, Human Bace-1 In Complex With
3-(1,1-Dioxidotetrahydro-2h-1,
2-Thiazin-2-Yl)-5-(Ethylamino)-N-((1s,2r)-2-Hydroxy-1-(
Phenylmethyl)-3-(((3-
(Trifluoromethyl)phenyl)methyl)amino) Propyl)benzamide
pdb|2VNN|A Chain A, Human Bace-1 In Complex With
7-Ethyl-N-((1s,2r)-2-Hydroxy-1-
(Phenylmethyl)-3-(((3-
(Trifluoromethyl)phenyl)methyl)amino)
Propyl)-1-Methyl-3,4-Dihydro-1h-(1,2,5)thiadiazepino(3,
4,5- Hi)indole-9-Carboxamide 2,2-Dioxide
pdb|2WF4|A Chain A, Human Bace-1 In Complex With
6-Ethyl-1-Methyl-N-((1s)-2-Oxo-
1-(Phenylmethyl)-3-(Tetrahydro-2h-Pyran-4-
Ylamino)propyl)-
1,3,4,6-Tetrahydro(1,2)thiazepino(5,4,3-Cd)indole-8-
Carboxamide 2,2-Dioxide
pdb|2WEZ|A Chain A, Human Bace-1 In Complex With
1-Ethyl-N-((1s,2r)-2-Hydroxy-3-
(((3-(Methyloxy)phenyl)methyl)amino)-1-(Phenylmethyl)
Propyl)-4-(2-Oxo-1-Pyrrolidinyl)-1h-Indole-6-Carboxamide
pdb|2WF0|A Chain A, Human Bace-1 In Complex With
4-Ethyl-N-((1s,2r)-2-Hydroxy-1-
(Phenylmethyl)-3-(((3-
(Trifluoromethyl)phenyl)methyl)amino)
Propyl)-8-(2-Oxo-1-Pyrrolidinyl)-6-Quinolinecarboxamide
pdb|2WF1|A Chain A, Human Bace-1 In Complex With
7-Ethyl-N-((1s,2r)-2-Hydroxy-3-
(((3-(Methyloxy)phenyl(Methyl)amino)-1-(Phenylmethyl)
Propyl)-1-Methyl-3,4-Dihydro-1h-(1,2,5)thiadiazepino(3,
4,5- Hi)indole-9-Carboxamide 2,2-Dioxide
pdb|2WF2|A Chain A, Human Bace-1 In Complex With
8-Ethyl-N-((1s,2r)-2-Hydroxy-3-
(((3-(Methyloxy)phenyl)methyl)amino)-1-(Phenylmethyl)
Propyl)-1-Methyl-3,4,7,8-Tetrahydro-1h,6h-(1,2,5)
Thiadiazepino(5,4,3-De)quinoxaline-10-Carboxamide 2,2-
Dioxide
pdb|2WF3|A Chain A, Human Bace-1 In Complex With 6-(Ethylamino)-N-((1s,2r)-2-
Hydroxy-3-(((3-(Methyloxy)phenyl)methyl)amino)-1-(
Phenylmethyl)propyl)-1-Methyl-1,3,4,5-Tetrahydro-2,1-
Benzothiazepine-8-Carboxamide 2,2-Dioxide
pdb|2XFI|A Chain A, Human Bace-1 In Complex With N-((1s,2r)-3-(((1s)-2-(
Cyclohexylamino)-1-Methyl-2-Oxoethyl)amino)-2-Hydroxy-1-
( Phenylmethyl)propyl)-3-((Methylsulfonyl)(Phenyl)amino)
Benzamide
pdb|2XFJ|A Chain A, Human Bace-1 In Complex With N-((1s,2r)-3-(((1s)-2-(
Cyclohexylamino)-1-Methyl-2-Oxoethyl)amino)-2-Hydroxy-1-
( Phenylmethyl)propyl)-3-(Ethylamino)-5-(2-Oxo-1-
Pyrrolidinyl)benzamide
pdb|2XFK|A Chain A, Human Bace-1 In Complex With N-((1s,2r)-3-(((1s)-2-(
Cyclohexylamino)-1-Methyl-2-Oxoethyl)amino)-2-Hydroxy-1-
(
Phenylmethyl)propyl)-3-(Ethylamino)-5-((Methylsulfonyl)(
Phenyl)amino)benzamide
Length = 392
Score = 89.0 bits (219), Expect = 4e-18, Method: Compositional matrix adjust.
Identities = 71/243 (29%), Positives = 115/243 (47%), Gaps = 21/243 (8%)
Query: 80 YYGEIGIGSPPQSFSVVFDTGSSNLWVPSSKCLFSISCYLHSRYRARLSRTYTKIGVPCK 139
YY E+ +GSPPQ+ +++ DTGSSN V ++ F LH Y+ +LS TY +
Sbjct: 15 YYVEMTVGSPPQTLNILVDTGSSNFAVGAAPHPF-----LHRYYQRQLSSTYRDLRKGVY 69
Query: 140 IHYGSGQISGFFSQDNVKI--GDMIIKDQEFVEVTKEGLLPFLALQFDGILGLGFRDIAA 197
+ Y G+ G D V I G + +T+ ++GILGL + +IA
Sbjct: 70 VPYTQGKWEGELGTDLVSIPHGPQVTVRANIAAITESDKFFIQGSNWEGILGLAYAEIAR 129
Query: 198 GNAT--PLWYNMVRQGHISQKIFSLWL--------NQDPNSEVGGEIIFGGFDWRHFRGS 247
+ + P + ++V+Q H+ +FSL L + + VGG +I GG D + GS
Sbjct: 130 PDDSLEPFFDSLVKQTHVP-NLFSLQLCGAGFPLQQSEVLASVGGSMIIGGIDHSLYTGS 188
Query: 248 HIYVPITEKGYWQIKVGDILIENSSTGF-CEDGC--TAILDSGTSVLAGPTTVVAQINHA 304
Y PI + Y+++ + + I C++ +I+DSGT+ L P V +
Sbjct: 189 LWYTPIRREWYYEVIIVRVEINGQDLKMDCKEYNYDKSIVDSGTTNLRLPKKVFEAAVKS 248
Query: 305 IGA 307
I A
Sbjct: 249 IKA 251
>pdb|2Q15|A Chain A, Structure Of Bace Complexed To Compound 3a
Length = 385
Score = 89.0 bits (219), Expect = 4e-18, Method: Compositional matrix adjust.
Identities = 71/243 (29%), Positives = 115/243 (47%), Gaps = 21/243 (8%)
Query: 80 YYGEIGIGSPPQSFSVVFDTGSSNLWVPSSKCLFSISCYLHSRYRARLSRTYTKIGVPCK 139
YY E+ +GSPPQ+ +++ DTGSSN V ++ F LH Y+ +LS TY +
Sbjct: 14 YYVEMTVGSPPQTLNILVDTGSSNFAVGAAPHPF-----LHRYYQRQLSSTYRDLRKGVY 68
Query: 140 IHYGSGQISGFFSQDNVKI--GDMIIKDQEFVEVTKEGLLPFLALQFDGILGLGFRDIAA 197
+ Y G+ G D V I G + +T+ ++GILGL + +IA
Sbjct: 69 VPYTQGKWEGELGTDLVSIPHGPQVTVRANIAAITESDKFFIQGSNWEGILGLAYAEIAR 128
Query: 198 GNAT--PLWYNMVRQGHISQKIFSLWL--------NQDPNSEVGGEIIFGGFDWRHFRGS 247
+ + P + ++V+Q H+ +FSL L + + VGG +I GG D + GS
Sbjct: 129 PDDSLEPFFDSLVKQTHVP-NLFSLQLCGAGFPLQQSEVLASVGGSMIIGGIDHSLYTGS 187
Query: 248 HIYVPITEKGYWQIKVGDILIENSSTGF-CEDGC--TAILDSGTSVLAGPTTVVAQINHA 304
Y PI + Y+++ + + I C++ +I+DSGT+ L P V +
Sbjct: 188 LWYTPIRREWYYEVIIVRVEINGQDLKMDCKEYNYDKSIVDSGTTNLRLPKKVFEAAVKS 247
Query: 305 IGA 307
I A
Sbjct: 248 IKA 250
>pdb|2Q11|A Chain A, Structure Of Bace Complexed To Compound 1
pdb|2Q11|B Chain B, Structure Of Bace Complexed To Compound 1
pdb|2Q11|C Chain C, Structure Of Bace Complexed To Compound 1
Length = 388
Score = 88.6 bits (218), Expect = 4e-18, Method: Compositional matrix adjust.
Identities = 71/243 (29%), Positives = 115/243 (47%), Gaps = 21/243 (8%)
Query: 80 YYGEIGIGSPPQSFSVVFDTGSSNLWVPSSKCLFSISCYLHSRYRARLSRTYTKIGVPCK 139
YY E+ +GSPPQ+ +++ DTGSSN V ++ F LH Y+ +LS TY +
Sbjct: 17 YYVEMTVGSPPQTLNILVDTGSSNFAVGAAPHPF-----LHRYYQRQLSSTYRDLRKGVY 71
Query: 140 IHYGSGQISGFFSQDNVKI--GDMIIKDQEFVEVTKEGLLPFLALQFDGILGLGFRDIAA 197
+ Y G+ G D V I G + +T+ ++GILGL + +IA
Sbjct: 72 VPYTQGKWEGELGTDLVSIPHGPQVTVRANIAAITESDKFFIQGSNWEGILGLAYAEIAR 131
Query: 198 GNAT--PLWYNMVRQGHISQKIFSLWL--------NQDPNSEVGGEIIFGGFDWRHFRGS 247
+ + P + ++V+Q H+ +FSL L + + VGG +I GG D + GS
Sbjct: 132 PDDSLEPFFDSLVKQTHVP-NLFSLQLCGAGFPLQQSEVLASVGGSMIIGGIDHSLYTGS 190
Query: 248 HIYVPITEKGYWQIKVGDILIENSSTGF-CEDGC--TAILDSGTSVLAGPTTVVAQINHA 304
Y PI + Y+++ + + I C++ +I+DSGT+ L P V +
Sbjct: 191 LWYTPIRREWYYEVIIVRVEINGQDLKMDCKEYNYDKSIVDSGTTNLRLPKKVFEAAVKS 250
Query: 305 IGA 307
I A
Sbjct: 251 IKA 253
>pdb|4EWO|A Chain A, Design And Synthesis Of Potent Hydroxyethylamine (Hea)
Bace-1 Inhibitors
pdb|4EXG|A Chain A, Design And Synthesis Of Potent Hydroxyethylamine (Hea)
Bace-1 Inhibitors
Length = 386
Score = 87.8 bits (216), Expect = 8e-18, Method: Compositional matrix adjust.
Identities = 73/243 (30%), Positives = 117/243 (48%), Gaps = 21/243 (8%)
Query: 80 YYGEIGIGSPPQSFSVVFDTGSSNLWVPSSKCLFSISCYLHSRYRARLSRTYTKIGVPCK 139
YY E+ +GSPPQ+ +++ DTGSSN V ++ F LH Y+ +LS TY +
Sbjct: 15 YYVEMTVGSPPQTLNILVDTGSSNFAVGAAPHPF-----LHRYYQRQLSSTYRDLRKGVY 69
Query: 140 IHYGSGQISGFFSQDNVKI--GDMIIKDQEFVEVTKEGLLPFLALQFDGILGLGFRDIAA 197
+ Y G+ G D V I G + +T+ ++GILGL + +IA
Sbjct: 70 VPYTQGKWEGELGTDLVSIPHGPNVTVRANIAAITESDKFFINGSNWEGILGLAYAEIAR 129
Query: 198 GNAT--PLWYNMVRQGHISQKIFSLW-------LNQ-DPNSEVGGEIIFGGFDWRHFRGS 247
+ + P + ++V+Q H+ +FSL LNQ + + VGG +I GG D + GS
Sbjct: 130 PDDSLEPFFDSLVKQTHVP-NLFSLQLCGAGFPLNQSEVLASVGGSMIIGGIDHSLYTGS 188
Query: 248 HIYVPITEKGYWQIKVGDILIENSSTGF-CEDGC--TAILDSGTSVLAGPTTVVAQINHA 304
Y PI + Y+++ + + I C++ +I+DSGT+ L P V +
Sbjct: 189 LWYTPIRREWYYEVIIVRVEINGQDLKMDCKEYNYDKSIVDSGTTNLRLPKKVFEAAVKS 248
Query: 305 IGA 307
I A
Sbjct: 249 IKA 251
>pdb|2FDP|A Chain A, Crystal Structure Of Beta-Secretase Complexed With An
Amino- Ethylene Inhibitor
pdb|2FDP|B Chain B, Crystal Structure Of Beta-Secretase Complexed With An
Amino- Ethylene Inhibitor
pdb|2FDP|C Chain C, Crystal Structure Of Beta-Secretase Complexed With An
Amino- Ethylene Inhibitor
pdb|3IXJ|A Chain A, Crystal Structure Of Beta-Secretase 1 In Complex With
Selective Beta-Secretase 1 Inhibitor
pdb|3IXJ|B Chain B, Crystal Structure Of Beta-Secretase 1 In Complex With
Selective Beta-Secretase 1 Inhibitor
pdb|3IXJ|C Chain C, Crystal Structure Of Beta-Secretase 1 In Complex With
Selective Beta-Secretase 1 Inhibitor
pdb|4GID|A Chain A, Structure Of Beta-Secretase Complexed With Inhibitor
pdb|4GID|B Chain B, Structure Of Beta-Secretase Complexed With Inhibitor
pdb|4GID|C Chain C, Structure Of Beta-Secretase Complexed With Inhibitor
pdb|4GID|D Chain D, Structure Of Beta-Secretase Complexed With Inhibitor
Length = 388
Score = 87.8 bits (216), Expect = 8e-18, Method: Compositional matrix adjust.
Identities = 73/243 (30%), Positives = 117/243 (48%), Gaps = 21/243 (8%)
Query: 80 YYGEIGIGSPPQSFSVVFDTGSSNLWVPSSKCLFSISCYLHSRYRARLSRTYTKIGVPCK 139
YY E+ +GSPPQ+ +++ DTGSSN V ++ F LH Y+ +LS TY +
Sbjct: 17 YYVEMTVGSPPQTLNILVDTGSSNFAVGAAPHPF-----LHRYYQRQLSSTYRDLRKGVY 71
Query: 140 IHYGSGQISGFFSQDNVKI--GDMIIKDQEFVEVTKEGLLPFLALQFDGILGLGFRDIAA 197
+ Y G+ G D V I G + +T+ ++GILGL + +IA
Sbjct: 72 VPYTQGKWEGELGTDLVSIPHGPNVTVRANIAAITESDKFFINGSNWEGILGLAYAEIAR 131
Query: 198 GNAT--PLWYNMVRQGHISQKIFSLW-------LNQ-DPNSEVGGEIIFGGFDWRHFRGS 247
+ + P + ++V+Q H+ +FSL LNQ + + VGG +I GG D + GS
Sbjct: 132 PDDSLEPFFDSLVKQTHVP-NLFSLQLCGAGFPLNQSEVLASVGGSMIIGGIDHSLYTGS 190
Query: 248 HIYVPITEKGYWQIKVGDILIENSSTGF-CEDGC--TAILDSGTSVLAGPTTVVAQINHA 304
Y PI + Y+++ + + I C++ +I+DSGT+ L P V +
Sbjct: 191 LWYTPIRREWYYEVIIVRVEINGQDLKMDCKEYNYDKSIVDSGTTNLRLPKKVFEAAVKS 250
Query: 305 IGA 307
I A
Sbjct: 251 IKA 253
>pdb|2HM1|A Chain A, Crystal Structure Of Human Beta-Secretase (Bace) In The
Presence Of An Inhibitor (2)
pdb|2IQG|A Chain A, Crystal Structure Of Hydroxyethyl Secondary Amine-Based
Peptidomimetic Inhibitor Of Human Beta-Secretase (Bace)
pdb|3IVH|A Chain A, Design And Synthesis Of Potent Bace-1 Inhibitors With
Cellular Activity: Structure-Activity Relationship Of P1
Substituents
pdb|3IVI|A Chain A, Design And Synthesis Of Potent Bace-1 Inhibitors With
Cellular Activity: Structure-Activity Relationship Of P1
Substituents
pdb|3IVI|B Chain B, Design And Synthesis Of Potent Bace-1 Inhibitors With
Cellular Activity: Structure-Activity Relationship Of P1
Substituents
pdb|3IVI|C Chain C, Design And Synthesis Of Potent Bace-1 Inhibitors With
Cellular Activity: Structure-Activity Relationship Of P1
Substituents
pdb|3NSH|A Chain A, Bace-1 In Complex With Eln475957
pdb|3NSH|B Chain B, Bace-1 In Complex With Eln475957
pdb|3NSH|C Chain C, Bace-1 In Complex With Eln475957
pdb|3N4L|A Chain A, Bace-1 In Complex With Eln380842
pdb|3N4L|B Chain B, Bace-1 In Complex With Eln380842
pdb|3N4L|C Chain C, Bace-1 In Complex With Eln380842
Length = 406
Score = 87.8 bits (216), Expect = 8e-18, Method: Compositional matrix adjust.
Identities = 73/243 (30%), Positives = 117/243 (48%), Gaps = 21/243 (8%)
Query: 80 YYGEIGIGSPPQSFSVVFDTGSSNLWVPSSKCLFSISCYLHSRYRARLSRTYTKIGVPCK 139
YY E+ +GSPPQ+ +++ DTGSSN V ++ F LH Y+ +LS TY +
Sbjct: 20 YYVEMTVGSPPQTLNILVDTGSSNFAVGAAPHPF-----LHRYYQRQLSSTYRDLRKGVY 74
Query: 140 IHYGSGQISGFFSQDNVKI--GDMIIKDQEFVEVTKEGLLPFLALQFDGILGLGFRDIAA 197
+ Y G+ G D V I G + +T+ ++GILGL + +IA
Sbjct: 75 VPYTQGKWEGELGTDLVSIPHGPNVTVRANIAAITESDKFFINGSNWEGILGLAYAEIAR 134
Query: 198 GNAT--PLWYNMVRQGHISQKIFSLW-------LNQ-DPNSEVGGEIIFGGFDWRHFRGS 247
+ + P + ++V+Q H+ +FSL LNQ + + VGG +I GG D + GS
Sbjct: 135 PDDSLEPFFDSLVKQTHVP-NLFSLQLCGAGFPLNQSEVLASVGGSMIIGGIDHSLYTGS 193
Query: 248 HIYVPITEKGYWQIKVGDILIENSSTGF-CEDGC--TAILDSGTSVLAGPTTVVAQINHA 304
Y PI + Y+++ + + I C++ +I+DSGT+ L P V +
Sbjct: 194 LWYTPIRREWYYEVIIVRVEINGQDLKMDCKEYNYDKSIVDSGTTNLRLPKKVFEAAVKS 253
Query: 305 IGA 307
I A
Sbjct: 254 IKA 256
>pdb|1FKN|A Chain A, Structure Of Beta-Secretase Complexed With Inhibitor
pdb|1FKN|B Chain B, Structure Of Beta-Secretase Complexed With Inhibitor
pdb|1M4H|A Chain A, Crystal Structure Of Beta-Secretase Complexed With
Inhibitor Om00-3
pdb|1M4H|B Chain B, Crystal Structure Of Beta-Secretase Complexed With
Inhibitor Om00-3
Length = 391
Score = 87.8 bits (216), Expect = 8e-18, Method: Compositional matrix adjust.
Identities = 73/243 (30%), Positives = 117/243 (48%), Gaps = 21/243 (8%)
Query: 80 YYGEIGIGSPPQSFSVVFDTGSSNLWVPSSKCLFSISCYLHSRYRARLSRTYTKIGVPCK 139
YY E+ +GSPPQ+ +++ DTGSSN V ++ F LH Y+ +LS TY +
Sbjct: 20 YYVEMTVGSPPQTLNILVDTGSSNFAVGAAPHPF-----LHRYYQRQLSSTYRDLRKGVY 74
Query: 140 IHYGSGQISGFFSQDNVKI--GDMIIKDQEFVEVTKEGLLPFLALQFDGILGLGFRDIAA 197
+ Y G+ G D V I G + +T+ ++GILGL + +IA
Sbjct: 75 VPYTQGKWEGELGTDLVSIPHGPNVTVRANIAAITESDKFFINGSNWEGILGLAYAEIAR 134
Query: 198 GNAT--PLWYNMVRQGHISQKIFSLW-------LNQ-DPNSEVGGEIIFGGFDWRHFRGS 247
+ + P + ++V+Q H+ +FSL LNQ + + VGG +I GG D + GS
Sbjct: 135 PDDSLEPFFDSLVKQTHVP-NLFSLQLCGAGFPLNQSEVLASVGGSMIIGGIDHSLYTGS 193
Query: 248 HIYVPITEKGYWQIKVGDILIENSSTGF-CEDGC--TAILDSGTSVLAGPTTVVAQINHA 304
Y PI + Y+++ + + I C++ +I+DSGT+ L P V +
Sbjct: 194 LWYTPIRREWYYEVIIVRVEINGQDLKMDCKEYNYDKSIVDSGTTNLRLPKKVFEAAVKS 253
Query: 305 IGA 307
I A
Sbjct: 254 IKA 256
>pdb|3UDH|A Chain A, Crystal Structure Of Bace With Compound 1
pdb|3UDJ|A Chain A, Crystal Structure Of Bace With Compound 5
pdb|3UDK|A Chain A, Crystal Structure Of Bace With Compound 6
pdb|3UDM|A Chain A, Crystal Structure Of Bace With Compound 8
pdb|3UDN|A Chain A, Crystal Structure Of Bace With Compound 9
pdb|3UDP|A Chain A, Crystal Structure Of Bace With Compound 12
pdb|3UDQ|A Chain A, Crystal Structure Of Bace With Compound 13
pdb|3UDR|A Chain A, Crystal Structure Of Bace With Compound 14
pdb|3UDY|A Chain A, Crystal Structure Of Bace With Compound 11
pdb|4FM7|A Chain A, Crystal Structure Of Bace With Compound 14g
pdb|4FM8|A Chain A, Crystal Structure Of Bace With Compound 12a
Length = 404
Score = 87.8 bits (216), Expect = 8e-18, Method: Compositional matrix adjust.
Identities = 73/243 (30%), Positives = 117/243 (48%), Gaps = 21/243 (8%)
Query: 80 YYGEIGIGSPPQSFSVVFDTGSSNLWVPSSKCLFSISCYLHSRYRARLSRTYTKIGVPCK 139
YY E+ +GSPPQ+ +++ DTGSSN V ++ F LH Y+ +LS TY +
Sbjct: 18 YYVEMTVGSPPQTLNILVDTGSSNFAVGAAPHPF-----LHRYYQRQLSSTYRDLRKGVY 72
Query: 140 IHYGSGQISGFFSQDNVKI--GDMIIKDQEFVEVTKEGLLPFLALQFDGILGLGFRDIAA 197
+ Y G+ G D V I G + +T+ ++GILGL + +IA
Sbjct: 73 VPYTQGKWEGELGTDLVSIPHGPNVTVRANIAAITESDKFFINGSNWEGILGLAYAEIAR 132
Query: 198 GNAT--PLWYNMVRQGHISQKIFSLW-------LNQ-DPNSEVGGEIIFGGFDWRHFRGS 247
+ + P + ++V+Q H+ +FSL LNQ + + VGG +I GG D + GS
Sbjct: 133 PDDSLEPFFDSLVKQTHVP-NLFSLQLCGAGFPLNQSEVLASVGGSMIIGGIDHSLYTGS 191
Query: 248 HIYVPITEKGYWQIKVGDILIENSSTGF-CEDGC--TAILDSGTSVLAGPTTVVAQINHA 304
Y PI + Y+++ + + I C++ +I+DSGT+ L P V +
Sbjct: 192 LWYTPIRREWYYEVIIVRVEINGQDLKMDCKEYNYDKSIVDSGTTNLRLPKKVFEAAVKS 251
Query: 305 IGA 307
I A
Sbjct: 252 IKA 254
>pdb|3BRA|A Chain A, Bace-1 Complexed With Compound 1
pdb|3BUF|A Chain A, Bace-1 Complexed With Compound 2
pdb|3BUG|A Chain A, Bace-1 Complexed With Compound 3
pdb|3BUH|A Chain A, Bace-1 Complexed With Compound 4
Length = 409
Score = 87.8 bits (216), Expect = 8e-18, Method: Compositional matrix adjust.
Identities = 76/248 (30%), Positives = 119/248 (47%), Gaps = 25/248 (10%)
Query: 80 YYGEIGIGSPPQSFSVVFDTGSSNLWVPSSKCLFSISCYLHSRYRARLSRTYTKIGVPCK 139
YY E+ +GSPPQ+ +++ DTGSSN V ++ F LH Y+ +LS TY +
Sbjct: 30 YYVEMTVGSPPQTLNILVDTGSSNFAVGAAPHPF-----LHRYYQRQLSSTYRDLRKGVY 84
Query: 140 IHYGSGQISGFFSQDNVKI--GDMIIKDQEFVEVTKEGLLPFLALQFDGILGLGFRDIAA 197
+ Y G+ G D V I G + +T+ ++GILGL + +IA
Sbjct: 85 VPYTQGKWEGELGTDLVSIPHGPNVTVRANIAAITESDKFFINGSNWEGILGLAYAEIAR 144
Query: 198 GNAT--PLWYNMVRQGHISQKIFSLW-------LNQ-DPNSEVGGEIIFGGFDWRHFRGS 247
+ + P + ++V+Q H+ +FSL LNQ + + VGG +I GG D + GS
Sbjct: 145 PDDSLEPFFDSLVKQTHVP-NLFSLQLCGAGFPLNQSEVLASVGGSMIIGGIDHSLYTGS 203
Query: 248 HIYVPITEKGYWQIKVGDILIENSSTGF-CEDGC--TAILDSGTSVLAGPTTV----VAQ 300
Y PI + Y+++ + + I C++ +I+DSGT+ L P V VA
Sbjct: 204 LWYTPIRREWYYEVIIVRVEINGQDLKMDCKEYNYDKSIVDSGTTNLRLPKKVFEAAVAS 263
Query: 301 INHAIGAE 308
I A E
Sbjct: 264 IKAASSTE 271
>pdb|4DPF|A Chain A, Bace-1 In Complex With A Hea-Macrocyclic Type Inhibitor
pdb|4DPI|A Chain A, Bace-1 In Complex With Hea-Macrocyclic Inhibitor, Mv078512
Length = 391
Score = 87.8 bits (216), Expect = 8e-18, Method: Compositional matrix adjust.
Identities = 73/243 (30%), Positives = 117/243 (48%), Gaps = 21/243 (8%)
Query: 80 YYGEIGIGSPPQSFSVVFDTGSSNLWVPSSKCLFSISCYLHSRYRARLSRTYTKIGVPCK 139
YY E+ +GSPPQ+ +++ DTGSSN V ++ F LH Y+ +LS TY +
Sbjct: 20 YYVEMTVGSPPQTLNILVDTGSSNFAVGAAPHPF-----LHRYYQRQLSSTYRDLRKGVY 74
Query: 140 IHYGSGQISGFFSQDNVKI--GDMIIKDQEFVEVTKEGLLPFLALQFDGILGLGFRDIAA 197
+ Y G+ G D V I G + +T+ ++GILGL + +IA
Sbjct: 75 VPYTQGKWEGELGTDLVSIPHGPNVTVRANIAAITESDKFFINGSNWEGILGLAYAEIAR 134
Query: 198 GNAT--PLWYNMVRQGHISQKIFSLW-------LNQ-DPNSEVGGEIIFGGFDWRHFRGS 247
+ + P + ++V+Q H+ +FSL LNQ + + VGG +I GG D + GS
Sbjct: 135 PDDSLEPFFDSLVKQTHVP-NLFSLQLCGAGFPLNQSEVLASVGGSMIIGGIDHSLYTGS 193
Query: 248 HIYVPITEKGYWQIKVGDILIENSSTGF-CEDGC--TAILDSGTSVLAGPTTVVAQINHA 304
Y PI + Y+++ + + I C++ +I+DSGT+ L P V +
Sbjct: 194 LWYTPIRREWYYEVIIVRVEINGQDLKMDCKEYNYDKSIVDSGTTNLRLPKKVFEAAVKS 253
Query: 305 IGA 307
I A
Sbjct: 254 IKA 256
>pdb|3U6A|A Chain A, Rational Design And Synthesis Of Aminopiperazinones As
Beta Secretase (Bace) Inhibitors
pdb|3U6A|B Chain B, Rational Design And Synthesis Of Aminopiperazinones As
Beta Secretase (Bace) Inhibitors
pdb|3U6A|C Chain C, Rational Design And Synthesis Of Aminopiperazinones As
Beta Secretase (Bace) Inhibitors
Length = 390
Score = 87.8 bits (216), Expect = 8e-18, Method: Compositional matrix adjust.
Identities = 73/243 (30%), Positives = 117/243 (48%), Gaps = 21/243 (8%)
Query: 80 YYGEIGIGSPPQSFSVVFDTGSSNLWVPSSKCLFSISCYLHSRYRARLSRTYTKIGVPCK 139
YY E+ +GSPPQ+ +++ DTGSSN V ++ F LH Y+ +LS TY +
Sbjct: 19 YYVEMTVGSPPQTLNILVDTGSSNFAVGAAPHPF-----LHRYYQRQLSSTYRDLRKGVY 73
Query: 140 IHYGSGQISGFFSQDNVKI--GDMIIKDQEFVEVTKEGLLPFLALQFDGILGLGFRDIAA 197
+ Y G+ G D V I G + +T+ ++GILGL + +IA
Sbjct: 74 VPYTQGKWEGELGTDLVSIPHGPNVTVRANIAAITESDKFFINGSNWEGILGLAYAEIAR 133
Query: 198 GNAT--PLWYNMVRQGHISQKIFSLW-------LNQ-DPNSEVGGEIIFGGFDWRHFRGS 247
+ + P + ++V+Q H+ +FSL LNQ + + VGG +I GG D + GS
Sbjct: 134 PDDSLEPFFDSLVKQTHVP-NLFSLQLCGAGFPLNQSEVLASVGGSMIIGGIDHSLYTGS 192
Query: 248 HIYVPITEKGYWQIKVGDILIENSSTGF-CEDGC--TAILDSGTSVLAGPTTVVAQINHA 304
Y PI + Y+++ + + I C++ +I+DSGT+ L P V +
Sbjct: 193 LWYTPIRREWYYEVIIVRVEINGQDLKMDCKEYNYDKSIVDSGTTNLRLPKKVFEAAVKS 252
Query: 305 IGA 307
I A
Sbjct: 253 IKA 255
>pdb|1SGZ|A Chain A, Crystal Structure Of Unbound Beta-Secretase Catalytic
Domain.
pdb|1SGZ|B Chain B, Crystal Structure Of Unbound Beta-Secretase Catalytic
Domain.
pdb|1SGZ|C Chain C, Crystal Structure Of Unbound Beta-Secretase Catalytic
Domain.
pdb|1SGZ|D Chain D, Crystal Structure Of Unbound Beta-Secretase Catalytic
Domain.
pdb|1XS7|D Chain D, Crystal Structure Of A Cycloamide-Urethane-Derived Novel
Inhibitor Bound To Human Brain Memapsin 2
(Beta-Secretase).
pdb|1XN2|A Chain A, New Substrate Binding Pockets For Beta-Secretase.
pdb|1XN2|B Chain B, New Substrate Binding Pockets For Beta-Secretase.
pdb|1XN2|C Chain C, New Substrate Binding Pockets For Beta-Secretase.
pdb|1XN2|D Chain D, New Substrate Binding Pockets For Beta-Secretase.
pdb|1XN3|A Chain A, Crystal Structure Of Beta-Secretase Bound To A Long
Inhibitor With Additional Upstream Residues.
pdb|1XN3|B Chain B, Crystal Structure Of Beta-Secretase Bound To A Long
Inhibitor With Additional Upstream Residues.
pdb|1XN3|C Chain C, Crystal Structure Of Beta-Secretase Bound To A Long
Inhibitor With Additional Upstream Residues.
pdb|1XN3|D Chain D, Crystal Structure Of Beta-Secretase Bound To A Long
Inhibitor With Additional Upstream Residues.
pdb|2G94|A Chain A, Crystal Structure Of Beta-secretase Bound To A Potent And
Highly Selective Inhibitor.
pdb|2G94|B Chain B, Crystal Structure Of Beta-secretase Bound To A Potent And
Highly Selective Inhibitor.
pdb|2G94|C Chain C, Crystal Structure Of Beta-secretase Bound To A Potent And
Highly Selective Inhibitor.
pdb|2G94|D Chain D, Crystal Structure Of Beta-secretase Bound To A Potent And
Highly Selective Inhibitor.
pdb|2P4J|A Chain A, Crystal Structure Of Beta-Secretase Bond To An Inhibitor
With Isophthalamide Derivatives At P2-P3
pdb|2P4J|B Chain B, Crystal Structure Of Beta-Secretase Bond To An Inhibitor
With Isophthalamide Derivatives At P2-P3
pdb|2P4J|C Chain C, Crystal Structure Of Beta-Secretase Bond To An Inhibitor
With Isophthalamide Derivatives At P2-P3
pdb|2P4J|D Chain D, Crystal Structure Of Beta-Secretase Bond To An Inhibitor
With Isophthalamide Derivatives At P2-P3
pdb|2VKM|A Chain A, Crystal Structure Of Grl-8234 Bound To Bace
(Beta-Secretase)
pdb|2VKM|B Chain B, Crystal Structure Of Grl-8234 Bound To Bace
(Beta-Secretase)
pdb|2VKM|C Chain C, Crystal Structure Of Grl-8234 Bound To Bace
(Beta-Secretase)
pdb|2VKM|D Chain D, Crystal Structure Of Grl-8234 Bound To Bace
(Beta-Secretase)
pdb|3UFL|A Chain A, Discovery Of Pyrrolidine-Based B-Secretase Inhibitors:
Lead Advancement Through Conformational Design For
Maintenance Of Ligand Binding Efficiency
Length = 389
Score = 87.8 bits (216), Expect = 9e-18, Method: Compositional matrix adjust.
Identities = 73/243 (30%), Positives = 117/243 (48%), Gaps = 21/243 (8%)
Query: 80 YYGEIGIGSPPQSFSVVFDTGSSNLWVPSSKCLFSISCYLHSRYRARLSRTYTKIGVPCK 139
YY E+ +GSPPQ+ +++ DTGSSN V ++ F LH Y+ +LS TY +
Sbjct: 18 YYVEMTVGSPPQTLNILVDTGSSNFAVGAAPHPF-----LHRYYQRQLSSTYRDLRKGVY 72
Query: 140 IHYGSGQISGFFSQDNVKI--GDMIIKDQEFVEVTKEGLLPFLALQFDGILGLGFRDIAA 197
+ Y G+ G D V I G + +T+ ++GILGL + +IA
Sbjct: 73 VPYTQGKWEGELGTDLVSIPHGPNVTVRANIAAITESDKFFINGSNWEGILGLAYAEIAR 132
Query: 198 GNAT--PLWYNMVRQGHISQKIFSLW-------LNQ-DPNSEVGGEIIFGGFDWRHFRGS 247
+ + P + ++V+Q H+ +FSL LNQ + + VGG +I GG D + GS
Sbjct: 133 PDDSLEPFFDSLVKQTHVP-NLFSLQLCGAGFPLNQSEVLASVGGSMIIGGIDHSLYTGS 191
Query: 248 HIYVPITEKGYWQIKVGDILIENSSTGF-CEDGC--TAILDSGTSVLAGPTTVVAQINHA 304
Y PI + Y+++ + + I C++ +I+DSGT+ L P V +
Sbjct: 192 LWYTPIRREWYYEVIIVRVEINGQDLKMDCKEYNYDKSIVDSGTTNLRLPKKVFEAAVKS 251
Query: 305 IGA 307
I A
Sbjct: 252 IKA 254
>pdb|2WJO|A Chain A, Human Bace (Beta Secretase) In Complex With
Cyclohexanecarboxylic Acid (2-(2-Am Ino-6-Phenoxy-4h-
Quinazolin-3-Yl)-2-Cyclohexyl-Ethyl)-Amide
Length = 412
Score = 87.8 bits (216), Expect = 9e-18, Method: Compositional matrix adjust.
Identities = 73/243 (30%), Positives = 117/243 (48%), Gaps = 21/243 (8%)
Query: 80 YYGEIGIGSPPQSFSVVFDTGSSNLWVPSSKCLFSISCYLHSRYRARLSRTYTKIGVPCK 139
YY E+ +GSPPQ+ +++ DTGSSN V ++ F LH Y+ +LS TY +
Sbjct: 18 YYVEMTVGSPPQTLNILVDTGSSNFAVGAAPHPF-----LHRYYQRQLSSTYRDLRKGVY 72
Query: 140 IHYGSGQISGFFSQDNVKI--GDMIIKDQEFVEVTKEGLLPFLALQFDGILGLGFRDIAA 197
+ Y G+ G D V I G + +T+ ++GILGL + +IA
Sbjct: 73 VPYTQGKWEGELGTDLVSIPHGPNVTVRANIAAITESDKFFINGSNWEGILGLAYAEIAR 132
Query: 198 GNAT--PLWYNMVRQGHISQKIFSLW-------LNQ-DPNSEVGGEIIFGGFDWRHFRGS 247
+ + P + ++V+Q H+ +FSL LNQ + + VGG +I GG D + GS
Sbjct: 133 PDDSLEPFFDSLVKQTHVP-NLFSLQLCGAGFPLNQSEVLASVGGSMIIGGIDHSLYTGS 191
Query: 248 HIYVPITEKGYWQIKVGDILIENSSTGF-CEDGC--TAILDSGTSVLAGPTTVVAQINHA 304
Y PI + Y+++ + + I C++ +I+DSGT+ L P V +
Sbjct: 192 LWYTPIRREWYYEVIIVRVEINGQDLKMDCKEYNYDKSIVDSGTTNLRLPKKVFEAAVKS 251
Query: 305 IGA 307
I A
Sbjct: 252 IKA 254
>pdb|2ZJH|A Chain A, Crystal Structure Of The Human Bace1 Catalytic Domain In
Complex With
N-(1-Benzyl-Piperidin-4-Yl)-4-Mercapto-Butyramide
pdb|2ZJL|A Chain A, Crystal Structure Of The Human Bace1 Catalytic Domain In
Complex With
N-[1-(5-Bromo-2,3-Dimethoxy-Benzyl)-Piperidin-
4-Yl]-4-Mercapto-Butyramide
Length = 405
Score = 87.8 bits (216), Expect = 9e-18, Method: Compositional matrix adjust.
Identities = 73/243 (30%), Positives = 117/243 (48%), Gaps = 21/243 (8%)
Query: 80 YYGEIGIGSPPQSFSVVFDTGSSNLWVPSSKCLFSISCYLHSRYRARLSRTYTKIGVPCK 139
YY E+ +GSPPQ+ +++ DTGSSN V ++ F LH Y+ +LS TY +
Sbjct: 34 YYVEMTVGSPPQTLNILVDTGSSNFAVGAAPHPF-----LHRYYQRQLSSTYRDLRKGVY 88
Query: 140 IHYGSGQISGFFSQDNVKI--GDMIIKDQEFVEVTKEGLLPFLALQFDGILGLGFRDIAA 197
+ Y G+ G D V I G + +T+ ++GILGL + +IA
Sbjct: 89 VPYTQGKWEGELGTDLVSIPHGPNVTVRANIAAITESDKFFINGSNWEGILGLAYAEIAR 148
Query: 198 GNAT--PLWYNMVRQGHISQKIFSLW-------LNQ-DPNSEVGGEIIFGGFDWRHFRGS 247
+ + P + ++V+Q H+ +FSL LNQ + + VGG +I GG D + GS
Sbjct: 149 PDDSLEPFFDSLVKQTHVP-NLFSLQLCGAGFPLNQSEVLASVGGSMIIGGIDHSLYTGS 207
Query: 248 HIYVPITEKGYWQIKVGDILIENSSTGF-CEDGC--TAILDSGTSVLAGPTTVVAQINHA 304
Y PI + Y+++ + + I C++ +I+DSGT+ L P V +
Sbjct: 208 LWYTPIRREWYYEVIIVRVEINGQDLKMDCKEYNYDKSIVDSGTTNLRLPKKVFEAAVKS 267
Query: 305 IGA 307
I A
Sbjct: 268 IKA 270
>pdb|3CIB|A Chain A, Structure Of Bace Bound To Sch727596
pdb|3CIB|B Chain B, Structure Of Bace Bound To Sch727596
pdb|3CIC|A Chain A, Structure Of Bace Bound To Sch709583
pdb|3CIC|B Chain B, Structure Of Bace Bound To Sch709583
pdb|3CID|A Chain A, Structure Of Bace Bound To Sch726222
pdb|3CID|B Chain B, Structure Of Bace Bound To Sch726222
pdb|4FS4|A Chain A, Structure Of Bace Bound To
(S)-4-(3'-Methoxy-[1,1'-Biphenyl]-3-Yl)-1,
4-Dimethyl-6-Oxotetrahydropyrimidin-2(1h)-Iminium
pdb|4FS4|B Chain B, Structure Of Bace Bound To
(S)-4-(3'-Methoxy-[1,1'-Biphenyl]-3-Yl)-1,
4-Dimethyl-6-Oxotetrahydropyrimidin-2(1h)-Iminium
Length = 390
Score = 87.8 bits (216), Expect = 9e-18, Method: Compositional matrix adjust.
Identities = 73/243 (30%), Positives = 117/243 (48%), Gaps = 21/243 (8%)
Query: 80 YYGEIGIGSPPQSFSVVFDTGSSNLWVPSSKCLFSISCYLHSRYRARLSRTYTKIGVPCK 139
YY E+ +GSPPQ+ +++ DTGSSN V ++ F LH Y+ +LS TY +
Sbjct: 18 YYVEMTVGSPPQTLNILVDTGSSNFAVGAAPHPF-----LHRYYQRQLSSTYRDLRKGVY 72
Query: 140 IHYGSGQISGFFSQDNVKI--GDMIIKDQEFVEVTKEGLLPFLALQFDGILGLGFRDIAA 197
+ Y G+ G D V I G + +T+ ++GILGL + +IA
Sbjct: 73 VPYTQGKWEGELGTDLVSIPHGPNVTVRANIAAITESDKFFINGSNWEGILGLAYAEIAR 132
Query: 198 GNAT--PLWYNMVRQGHISQKIFSLW-------LNQ-DPNSEVGGEIIFGGFDWRHFRGS 247
+ + P + ++V+Q H+ +FSL LNQ + + VGG +I GG D + GS
Sbjct: 133 PDDSLEPFFDSLVKQTHVP-NLFSLQLCGAGFPLNQSEVLASVGGSMIIGGIDHSLYTGS 191
Query: 248 HIYVPITEKGYWQIKVGDILIENSSTGF-CEDGC--TAILDSGTSVLAGPTTVVAQINHA 304
Y PI + Y+++ + + I C++ +I+DSGT+ L P V +
Sbjct: 192 LWYTPIRREWYYEVIIVRVEINGQDLKMDCKEYNYDKSIVDSGTTNLRLPKKVFEAAVKS 251
Query: 305 IGA 307
I A
Sbjct: 252 IKA 254
>pdb|4B1D|A Chain A, New Aminoimidazoles As Bace-1 Inhibitors: From Rational
Design To Ab-Lowering In Brain
pdb|4B1E|A Chain A, New Aminoimidazoles As Bace-1 Inhibitors: From Rational
Design To Ab-Lowering In Brain
Length = 388
Score = 87.8 bits (216), Expect = 9e-18, Method: Compositional matrix adjust.
Identities = 73/243 (30%), Positives = 117/243 (48%), Gaps = 21/243 (8%)
Query: 80 YYGEIGIGSPPQSFSVVFDTGSSNLWVPSSKCLFSISCYLHSRYRARLSRTYTKIGVPCK 139
YY E+ +GSPPQ+ +++ DTGSSN V ++ F LH Y+ +LS TY +
Sbjct: 18 YYVEMTVGSPPQTLNILVDTGSSNFAVGAAPHPF-----LHRYYQRQLSSTYRDLRKGVY 72
Query: 140 IHYGSGQISGFFSQDNVKI--GDMIIKDQEFVEVTKEGLLPFLALQFDGILGLGFRDIAA 197
+ Y G+ G D V I G + +T+ ++GILGL + +IA
Sbjct: 73 VPYTQGKWEGELGTDLVSIPHGPNVTVRANIAAITESDKFFINGSNWEGILGLAYAEIAR 132
Query: 198 GNAT--PLWYNMVRQGHISQKIFSLW-------LNQ-DPNSEVGGEIIFGGFDWRHFRGS 247
+ + P + ++V+Q H+ +FSL LNQ + + VGG +I GG D + GS
Sbjct: 133 PDDSLEPFFDSLVKQTHVP-NLFSLQLCGAGFPLNQSEVLASVGGSMIIGGIDHSLYTGS 191
Query: 248 HIYVPITEKGYWQIKVGDILIENSSTGF-CEDGC--TAILDSGTSVLAGPTTVVAQINHA 304
Y PI + Y+++ + + I C++ +I+DSGT+ L P V +
Sbjct: 192 LWYTPIRREWYYEVIIVRVEINGQDLKMDCKEYNYDKSIVDSGTTNLRLPKKVFEAAVKS 251
Query: 305 IGA 307
I A
Sbjct: 252 IKA 254
>pdb|2ZJI|A Chain A, Crystal Structure Of The Human Bace1 Catalytic Domain In
Complex With
N-[1-(2,
6-Dimethoxy-Benzyl)-Piperidin-4-Yl]-4-Mercapto-
Butyramide
Length = 405
Score = 87.8 bits (216), Expect = 9e-18, Method: Compositional matrix adjust.
Identities = 73/243 (30%), Positives = 117/243 (48%), Gaps = 21/243 (8%)
Query: 80 YYGEIGIGSPPQSFSVVFDTGSSNLWVPSSKCLFSISCYLHSRYRARLSRTYTKIGVPCK 139
YY E+ +GSPPQ+ +++ DTGSSN V ++ F LH Y+ +LS TY +
Sbjct: 34 YYVEMTVGSPPQTLNILVDTGSSNFAVGAAPHPF-----LHRYYQRQLSSTYRDLRKGVY 88
Query: 140 IHYGSGQISGFFSQDNVKI--GDMIIKDQEFVEVTKEGLLPFLALQFDGILGLGFRDIAA 197
+ Y G+ G D V I G + +T+ ++GILGL + +IA
Sbjct: 89 VPYTQGKWEGELGTDLVSIPHGPNVTVRANIAAITESDKFFINGSNWEGILGLAYAEIAR 148
Query: 198 GNAT--PLWYNMVRQGHISQKIFSLW-------LNQ-DPNSEVGGEIIFGGFDWRHFRGS 247
+ + P + ++V+Q H+ +FSL LNQ + + VGG +I GG D + GS
Sbjct: 149 PDDSLEPFFDSLVKQTHVP-NLFSLQLCGAGFPLNQSEVLASVGGSMIIGGIDHSLYTGS 207
Query: 248 HIYVPITEKGYWQIKVGDILIENSSTGF-CEDGC--TAILDSGTSVLAGPTTVVAQINHA 304
Y PI + Y+++ + + I C++ +I+DSGT+ L P V +
Sbjct: 208 LWYTPIRREWYYEVIIVRVEINGQDLKMDCKEYNYDKSIVDSGTTNLRLPKKVFEAAVKS 267
Query: 305 IGA 307
I A
Sbjct: 268 IKA 270
>pdb|2QU2|A Chain A, Bace1 With Compound 1
pdb|2QU3|A Chain A, Bace1 With Compound 2
pdb|2ZDZ|A Chain A, X-Ray Structure Of Bace-1 In Complex With Compound 3.B.10
pdb|2ZE1|A Chain A, X-Ray Structure Of Bace-1 In Complex With Compound 6g
pdb|3IGB|A Chain A, Bace-1 With Compound 3
pdb|3IN3|A Chain A, Bace1 With Compound 30
pdb|3IN4|A Chain A, Bace1 With Compound 38
pdb|3IND|A Chain A, Bace1 With The Aminohydantoin Compound 29
pdb|3INE|A Chain A, Bace1 With The Aminohydantoin Compound S-34
pdb|3INF|A Chain A, Bace1 With The Aminohydantoin Compound 37
pdb|3INH|A Chain A, Bace1 With The Aminohydantoin Compound R-58
pdb|3LHG|A Chain A, Bace1 In Complex With The Aminohydantoin Compound 4g
pdb|3L38|A Chain A, Bace1 In Complex With The Aminopyridine Compound 44
pdb|3L3A|A Chain A, Bace-1 With The Aminopyridine Compound 32
pdb|3OOZ|A Chain A, Bace1 In Complex With The Aminohydantoin Compound 102
pdb|3S7L|A Chain A, Pyrazolyl And Thienyl Aminohydantoins As Potent Bace1
Inhibitors
pdb|3S7M|A Chain A, Pyrazolyl And Thienyl Aminohydantoins As Potent Bace1
Inhibitors
Length = 415
Score = 87.4 bits (215), Expect = 1e-17, Method: Compositional matrix adjust.
Identities = 73/243 (30%), Positives = 117/243 (48%), Gaps = 21/243 (8%)
Query: 80 YYGEIGIGSPPQSFSVVFDTGSSNLWVPSSKCLFSISCYLHSRYRARLSRTYTKIGVPCK 139
YY E+ +GSPPQ+ +++ DTGSSN V ++ F LH Y+ +LS TY +
Sbjct: 30 YYVEMTVGSPPQTLNILVDTGSSNFAVGAAPHPF-----LHRYYQRQLSSTYRDLRKGVY 84
Query: 140 IHYGSGQISGFFSQDNVKI--GDMIIKDQEFVEVTKEGLLPFLALQFDGILGLGFRDIAA 197
+ Y G+ G D V I G + +T+ ++GILGL + +IA
Sbjct: 85 VPYTQGKWEGELGTDLVSIPHGPNVTVRANIAAITESDKFFINGSNWEGILGLAYAEIAR 144
Query: 198 GNAT--PLWYNMVRQGHISQKIFSLW-------LNQ-DPNSEVGGEIIFGGFDWRHFRGS 247
+ + P + ++V+Q H+ +FSL LNQ + + VGG +I GG D + GS
Sbjct: 145 PDDSLEPFFDSLVKQTHVP-NLFSLQLCGAGFPLNQSEVLASVGGSMIIGGIDHSLYTGS 203
Query: 248 HIYVPITEKGYWQIKVGDILIENSSTGF-CEDGC--TAILDSGTSVLAGPTTVVAQINHA 304
Y PI + Y+++ + + I C++ +I+DSGT+ L P V +
Sbjct: 204 LWYTPIRREWYYEVIIVRVEINGQDLKMDCKEYNYDKSIVDSGTTNLRLPKKVFEAAVKS 263
Query: 305 IGA 307
I A
Sbjct: 264 IKA 266
>pdb|3KMX|A Chain A, Structure Of Bace Bound To Sch346572
pdb|3KMX|B Chain B, Structure Of Bace Bound To Sch346572
pdb|3KMY|A Chain A, Structure Of Bace Bound To Sch12472
pdb|3KMY|B Chain B, Structure Of Bace Bound To Sch12472
pdb|3KN0|A Chain A, Structure Of Bace Bound To Sch708236
pdb|3KN0|B Chain B, Structure Of Bace Bound To Sch708236
pdb|3LNK|A Chain A, Structure Of Bace Bound To Sch743813
pdb|3LNK|B Chain B, Structure Of Bace Bound To Sch743813
pdb|4FRS|A Chain A, Structure Of Bace In Complex With
(S)-4-(3-Chloro-5-(5-(Prop-1-Yn-1-
Yl)pyridin-3-Yl)thiophen-2-Yl)-1,
4-Dimethyl-6-Oxotetrahydropyrimidin- 2(1h)-Iminium
pdb|4FRS|B Chain B, Structure Of Bace In Complex With
(S)-4-(3-Chloro-5-(5-(Prop-1-Yn-1-
Yl)pyridin-3-Yl)thiophen-2-Yl)-1,
4-Dimethyl-6-Oxotetrahydropyrimidin- 2(1h)-Iminium
Length = 395
Score = 87.4 bits (215), Expect = 1e-17, Method: Compositional matrix adjust.
Identities = 73/243 (30%), Positives = 117/243 (48%), Gaps = 21/243 (8%)
Query: 80 YYGEIGIGSPPQSFSVVFDTGSSNLWVPSSKCLFSISCYLHSRYRARLSRTYTKIGVPCK 139
YY E+ +GSPPQ+ +++ DTGSSN V ++ F LH Y+ +LS TY +
Sbjct: 23 YYVEMTVGSPPQTLNILVDTGSSNFAVGAAPHPF-----LHRYYQRQLSSTYRDLRKGVY 77
Query: 140 IHYGSGQISGFFSQDNVKI--GDMIIKDQEFVEVTKEGLLPFLALQFDGILGLGFRDIAA 197
+ Y G+ G D V I G + +T+ ++GILGL + +IA
Sbjct: 78 VPYTQGKWEGELGTDLVSIPHGPNVTVRANIAAITESDKFFINGSNWEGILGLAYAEIAR 137
Query: 198 GNAT--PLWYNMVRQGHISQKIFSLW-------LNQ-DPNSEVGGEIIFGGFDWRHFRGS 247
+ + P + ++V+Q H+ +FSL LNQ + + VGG +I GG D + GS
Sbjct: 138 PDDSLEPFFDSLVKQTHVP-NLFSLQLCGAGFPLNQSEVLASVGGSMIIGGIDHSLYTGS 196
Query: 248 HIYVPITEKGYWQIKVGDILIENSSTGF-CEDGC--TAILDSGTSVLAGPTTVVAQINHA 304
Y PI + Y+++ + + I C++ +I+DSGT+ L P V +
Sbjct: 197 LWYTPIRREWYYEVIIVRVEINGQDLKMDCKEYNYDKSIVDSGTTNLRLPKKVFEAAVKS 256
Query: 305 IGA 307
I A
Sbjct: 257 IKA 259
>pdb|2ZJN|A Chain A, Crystal Structure Of The Human Bace1 Catalytic Domain In
Complex With
N-[1-(5-Chloro-2-Isopropoxy-3-Methoxy-Benzyl)-
Piperidin-4-Yl]-2-(2-Methyl-4-Sulfamoyl-Phenoxy)-
Acetamide
pdb|3H0B|A Chain A, Discovery Of Aminoheterocycles As A Novel Beta-Secretase
Inhibitor Class
pdb|3H0B|B Chain B, Discovery Of Aminoheterocycles As A Novel Beta-Secretase
Inhibitor Class
pdb|3H0B|C Chain C, Discovery Of Aminoheterocycles As A Novel Beta-Secretase
Inhibitor Class
Length = 405
Score = 87.4 bits (215), Expect = 1e-17, Method: Compositional matrix adjust.
Identities = 73/243 (30%), Positives = 117/243 (48%), Gaps = 21/243 (8%)
Query: 80 YYGEIGIGSPPQSFSVVFDTGSSNLWVPSSKCLFSISCYLHSRYRARLSRTYTKIGVPCK 139
YY E+ +GSPPQ+ +++ DTGSSN V ++ F LH Y+ +LS TY +
Sbjct: 34 YYVEMTVGSPPQTLNILVDTGSSNFAVGAAPHPF-----LHRYYQRQLSSTYRDLRKGVY 88
Query: 140 IHYGSGQISGFFSQDNVKI--GDMIIKDQEFVEVTKEGLLPFLALQFDGILGLGFRDIAA 197
+ Y G+ G D V I G + +T+ ++GILGL + +IA
Sbjct: 89 VPYTQGKWEGELGTDLVSIPHGPNVTVRANIAAITESDKFFINGSNWEGILGLAYAEIAR 148
Query: 198 GNAT--PLWYNMVRQGHISQKIFSLW-------LNQ-DPNSEVGGEIIFGGFDWRHFRGS 247
+ + P + ++V+Q H+ +FSL LNQ + + VGG +I GG D + GS
Sbjct: 149 PDDSLEPFFDSLVKQTHVP-NLFSLQLCGAGFPLNQSEVLASVGGSMIIGGIDHSLYTGS 207
Query: 248 HIYVPITEKGYWQIKVGDILIENSSTGF-CEDGC--TAILDSGTSVLAGPTTVVAQINHA 304
Y PI + Y+++ + + I C++ +I+DSGT+ L P V +
Sbjct: 208 LWYTPIRREWYYEVIIVRVEINGQDLKMDCKEYNYDKSIVDSGTTNLRLPKKVFEAAVKS 267
Query: 305 IGA 307
I A
Sbjct: 268 IKA 270
>pdb|3DM6|A Chain A, Beta-Secretase 1 Complexed With Statine-Based Inhibitor
pdb|3DM6|B Chain B, Beta-Secretase 1 Complexed With Statine-Based Inhibitor
pdb|3DM6|C Chain C, Beta-Secretase 1 Complexed With Statine-Based Inhibitor
pdb|3I25|A Chain A, Potent Beta-Secretase 1 Hydroxyethylene Inhibitor
pdb|3I25|B Chain B, Potent Beta-Secretase 1 Hydroxyethylene Inhibitor
pdb|3I25|C Chain C, Potent Beta-Secretase 1 Hydroxyethylene Inhibitor
Length = 406
Score = 87.4 bits (215), Expect = 1e-17, Method: Compositional matrix adjust.
Identities = 73/243 (30%), Positives = 117/243 (48%), Gaps = 21/243 (8%)
Query: 80 YYGEIGIGSPPQSFSVVFDTGSSNLWVPSSKCLFSISCYLHSRYRARLSRTYTKIGVPCK 139
YY E+ +GSPPQ+ +++ DTGSSN V ++ F LH Y+ +LS TY +
Sbjct: 35 YYVEMTVGSPPQTLNILVDTGSSNFAVGAAPHPF-----LHRYYQRQLSSTYRDLRKGVY 89
Query: 140 IHYGSGQISGFFSQDNVKI--GDMIIKDQEFVEVTKEGLLPFLALQFDGILGLGFRDIAA 197
+ Y G+ G D V I G + +T+ ++GILGL + +IA
Sbjct: 90 VPYTQGKWEGELGTDLVSIPHGPNVTVRANIAAITESDKFFINGSNWEGILGLAYAEIAR 149
Query: 198 GNAT--PLWYNMVRQGHISQKIFSLW-------LNQ-DPNSEVGGEIIFGGFDWRHFRGS 247
+ + P + ++V+Q H+ +FSL LNQ + + VGG +I GG D + GS
Sbjct: 150 PDDSLEPFFDSLVKQTHVP-NLFSLQLCGAGFPLNQSEVLASVGGSMIIGGIDHSLYTGS 208
Query: 248 HIYVPITEKGYWQIKVGDILIENSSTGF-CEDGC--TAILDSGTSVLAGPTTVVAQINHA 304
Y PI + Y+++ + + I C++ +I+DSGT+ L P V +
Sbjct: 209 LWYTPIRREWYYEVIIVRVEINGQDLKMDCKEYNYDKSIVDSGTTNLRLPKKVFEAAVKS 268
Query: 305 IGA 307
I A
Sbjct: 269 IKA 271
>pdb|2ZHR|A Chain A, Crystal Structure Of Bace1 In Complex With Om99-2 At Ph
5.0
pdb|2ZHR|B Chain B, Crystal Structure Of Bace1 In Complex With Om99-2 At Ph
5.0
pdb|2ZHS|A Chain A, Crystal Structure Of Bace1 At Ph 4.0
pdb|2ZHT|A Chain A, Crystal Structure Of Bace1 At Ph 4.5
pdb|2ZHU|A Chain A, Crystal Structure Of Bace1 At Ph 5.0
pdb|2ZHV|A Chain A, Crystal Structure Of Bace1 At Ph 7.0
Length = 411
Score = 87.4 bits (215), Expect = 1e-17, Method: Compositional matrix adjust.
Identities = 73/243 (30%), Positives = 117/243 (48%), Gaps = 21/243 (8%)
Query: 80 YYGEIGIGSPPQSFSVVFDTGSSNLWVPSSKCLFSISCYLHSRYRARLSRTYTKIGVPCK 139
YY E+ +GSPPQ+ +++ DTGSSN V ++ F LH Y+ +LS TY +
Sbjct: 32 YYVEMTVGSPPQTLNILVDTGSSNFAVGAAPHPF-----LHRYYQRQLSSTYRDLRKGVY 86
Query: 140 IHYGSGQISGFFSQDNVKI--GDMIIKDQEFVEVTKEGLLPFLALQFDGILGLGFRDIAA 197
+ Y G+ G D V I G + +T+ ++GILGL + +IA
Sbjct: 87 VPYTQGKWEGELGTDLVSIPHGPNVTVRANIAAITESDKFFINGSNWEGILGLAYAEIAR 146
Query: 198 GNAT--PLWYNMVRQGHISQKIFSLW-------LNQ-DPNSEVGGEIIFGGFDWRHFRGS 247
+ + P + ++V+Q H+ +FSL LNQ + + VGG +I GG D + GS
Sbjct: 147 PDDSLEPFFDSLVKQTHVP-NLFSLQLCGAGFPLNQSEVLASVGGSMIIGGIDHSLYTGS 205
Query: 248 HIYVPITEKGYWQIKVGDILIENSSTGF-CEDGC--TAILDSGTSVLAGPTTVVAQINHA 304
Y PI + Y+++ + + I C++ +I+DSGT+ L P V +
Sbjct: 206 LWYTPIRREWYYEVIIVRVEINGQDLKMDCKEYNYDKSIVDSGTTNLRLPKKVFEAAVKS 265
Query: 305 IGA 307
I A
Sbjct: 266 IKA 268
>pdb|2QK5|A Chain A, Structure Of Bace1 Bound To Sch626485
pdb|2QK5|B Chain B, Structure Of Bace1 Bound To Sch626485
pdb|2QMD|A Chain A, Structure Of Bace Bound To Sch722924
pdb|2QMD|B Chain B, Structure Of Bace Bound To Sch722924
pdb|2QMF|A Chain A, Structure Of Bace Bound To Sch735310
pdb|2QMF|B Chain B, Structure Of Bace Bound To Sch735310
pdb|2QP8|A Chain A, Structure Of Bace Bound To Sch734723
pdb|2QP8|B Chain B, Structure Of Bace Bound To Sch734723
pdb|2QMG|A Chain A, Structure Of Bace Bound To Sch745966
pdb|2QMG|B Chain B, Structure Of Bace Bound To Sch745966
Length = 395
Score = 87.4 bits (215), Expect = 1e-17, Method: Compositional matrix adjust.
Identities = 73/243 (30%), Positives = 117/243 (48%), Gaps = 21/243 (8%)
Query: 80 YYGEIGIGSPPQSFSVVFDTGSSNLWVPSSKCLFSISCYLHSRYRARLSRTYTKIGVPCK 139
YY E+ +GSPPQ+ +++ DTGSSN V ++ F LH Y+ +LS TY +
Sbjct: 23 YYVEMTVGSPPQTLNILVDTGSSNFAVGAAPHPF-----LHRYYQRQLSSTYRDLRKGVY 77
Query: 140 IHYGSGQISGFFSQDNVKI--GDMIIKDQEFVEVTKEGLLPFLALQFDGILGLGFRDIAA 197
+ Y G+ G D V I G + +T+ ++GILGL + +IA
Sbjct: 78 VPYTQGKWEGELGTDLVSIPHGPNVTVRANIAAITESDKFFINGSNWEGILGLAYAEIAR 137
Query: 198 GNAT--PLWYNMVRQGHISQKIFSLW-------LNQ-DPNSEVGGEIIFGGFDWRHFRGS 247
+ + P + ++V+Q H+ +FSL LNQ + + VGG +I GG D + GS
Sbjct: 138 PDDSLEPFFDSLVKQTHVP-NLFSLQLCGAGFPLNQSEVLASVGGSMIIGGIDHSLYTGS 196
Query: 248 HIYVPITEKGYWQIKVGDILIENSSTGF-CEDGC--TAILDSGTSVLAGPTTVVAQINHA 304
Y PI + Y+++ + + I C++ +I+DSGT+ L P V +
Sbjct: 197 LWYTPIRREWYYEVIIVRVEINGQDLKMDCKEYNYDKSIVDSGTTNLRLPKKVFEAAVKS 256
Query: 305 IGA 307
I A
Sbjct: 257 IKA 259
>pdb|1W50|A Chain A, Apo Structure Of Bace (beta Secretase)
pdb|1W51|A Chain A, Bace (Beta Secretase) In Complex With A Nanomolar Non-
Peptidic Inhibitor
pdb|3RSV|A Chain A, Structure Of Bace-1 (Beta-Secretase) In Complex With
(R)-3-(2-Amino-6-
O-Tolylquinolin-3-Yl)-N-((R)-2,
2-Dimethyltetrahydro-2h-Pyran-4-Yl)-2- Methylpropanamide
pdb|3RSX|A Chain A, Structure Of Bace-1 (Beta-Secretase) In Complex With
6-(Thiophen-3- Yl)quinolin-2-Amine
pdb|3RTH|A Chain A, Structure Of Bace-1 (Beta-Secretase) In Complex With
6-(2-(3,3- Dimethylbut-1-Ynyl)phenyl)quinolin-2-Amine
pdb|3RTM|A Chain A, Structure Of Bace-1 (Beta-Secretase) In Complex With 3-(2-
Aminoquinolin-3-Yl)-N-Cyclohexyl-N-Methylpropanamide
pdb|3RTN|A Chain A, Structure Of Bace-1 (Beta-Secretase) In Complex With
3-(2-Amino-6-O-
Tolylquinolin-3-Yl)-N-Cyclohexylpropanamide
pdb|3RU1|A Chain A, Structure Of Bace-1 (Beta-Secretase) In Complex With 3-(2-
Aminoquinolin-3-Yl)-N-(Cyclohexylmethyl)propanamide
pdb|3RVI|A Chain A, Structure Of Bace-1 (Beta-Secretase) In Complex With
2-((2-Amino-6-O-
Tolylquinolin-3-Yl)methyl)-N-
(Cyclohexylmethyl)pentanamide
pdb|4ACU|A Chain A, Aminoimidazoles As Bace-1 Inhibitors. X-Ray Crystal
Structure Of Beta Secretase Complexed With Compound 14
pdb|4ACX|A Chain A, Aminoimidazoles As Bace-1 Inhibitors. X-Ray Crystal
Structure Of Beta Secretase Complexed With Compound 23
pdb|4DH6|A Chain A, Structure Of Bace-1 (Beta-Secretase) In Complex With
(2r)-N-((2s,3r)-
1-(Benzo[d][1,
3]dioxol-5-Yl)-3-Hydroxy-4-((S)-6'-Neopentyl-3',4'-
Dihydrospiro[cyclobutane-1,2'-Pyrano[2,
3-B]pyridine]-4'-Ylamino)
Butan-2-Yl)-2-Methoxypropanamide
pdb|4FRI|A Chain A, Crystal Structure Of Bace1 In Complex With Biarylspiro
Aminooxazoline 6
pdb|4FRJ|A Chain A, Crystal Structure Of Bace1 In Complex With Aminooxazoline
Xanthene 9l
pdb|4FRK|A Chain A, Crystal Structure Of Bace1 In Complex With Aminooxazoline
Xanthene 11a
pdb|4DI2|A Chain A, Crystal Structure Of Bace1 In Complex With
Hydroxyethylamine Inhibitor 37
pdb|4DI2|B Chain B, Crystal Structure Of Bace1 In Complex With
Hydroxyethylamine Inhibitor 37
pdb|4DI2|C Chain C, Crystal Structure Of Bace1 In Complex With
Hydroxyethylamine Inhibitor 37
pdb|4DUS|A Chain A, Structure Of Bace-1 (Beta-Secretase) In Complex With
N-((2s,3r)-1-(4-
Fluorophenyl)-3-Hydroxy-4-((6'-Neopentyl-3',4'-
Dihydrospiro[cyclobutane-1,2'-Pyrano[2,
3-B]pyridin]-4'-Yl)amino) Butan-2-Yl)acetamide
pdb|4AZY|A Chain A, Design And Synthesis Of Bace1 Inhibitors With In Vivo
Brain Reduction Of Beta-Amyloid Peptides (Compound 10)
pdb|4B00|A Chain A, Design And Synthesis Of Bace1 Inhibitors With In Vivo
Brain Reduction Of Beta-Amyloid Peptides (Compound
(R)-41)
pdb|4B05|A Chain A, Preclinical Characterization Of Azd3839, A Novel Clinical
Candidate Bace1 Inhibitor For The Treatment Of Alzheimer
Disease
Length = 411
Score = 87.4 bits (215), Expect = 1e-17, Method: Compositional matrix adjust.
Identities = 73/243 (30%), Positives = 117/243 (48%), Gaps = 21/243 (8%)
Query: 80 YYGEIGIGSPPQSFSVVFDTGSSNLWVPSSKCLFSISCYLHSRYRARLSRTYTKIGVPCK 139
YY E+ +GSPPQ+ +++ DTGSSN V ++ F LH Y+ +LS TY +
Sbjct: 33 YYVEMTVGSPPQTLNILVDTGSSNFAVGAAPHPF-----LHRYYQRQLSSTYRDLRKGVY 87
Query: 140 IHYGSGQISGFFSQDNVKI--GDMIIKDQEFVEVTKEGLLPFLALQFDGILGLGFRDIAA 197
+ Y G+ G D V I G + +T+ ++GILGL + +IA
Sbjct: 88 VPYTQGKWEGELGTDLVSIPHGPNVTVRANIAAITESDKFFINGSNWEGILGLAYAEIAR 147
Query: 198 GNAT--PLWYNMVRQGHISQKIFSLW-------LNQ-DPNSEVGGEIIFGGFDWRHFRGS 247
+ + P + ++V+Q H+ +FSL LNQ + + VGG +I GG D + GS
Sbjct: 148 PDDSLEPFFDSLVKQTHVP-NLFSLQLCGAGFPLNQSEVLASVGGSMIIGGIDHSLYTGS 206
Query: 248 HIYVPITEKGYWQIKVGDILIENSSTGF-CEDGC--TAILDSGTSVLAGPTTVVAQINHA 304
Y PI + Y+++ + + I C++ +I+DSGT+ L P V +
Sbjct: 207 LWYTPIRREWYYEVIIVRVEINGQDLKMDCKEYNYDKSIVDSGTTNLRLPKKVFEAAVKS 266
Query: 305 IGA 307
I A
Sbjct: 267 IKA 269
>pdb|3L58|A Chain A, Structure Of Bace Bound To Sch589432
pdb|3L58|B Chain B, Structure Of Bace Bound To Sch589432
pdb|3L59|A Chain A, Structure Of Bace Bound To Sch710413
pdb|3L59|B Chain B, Structure Of Bace Bound To Sch710413
pdb|3L5B|A Chain A, Structure Of Bace Bound To Sch713601
pdb|3L5B|B Chain B, Structure Of Bace Bound To Sch713601
pdb|3L5C|A Chain A, Structure Of Bace Bound To Sch723871
pdb|3L5C|B Chain B, Structure Of Bace Bound To Sch723871
pdb|3L5D|A Chain A, Structure Of Bace Bound To Sch723873
pdb|3L5D|B Chain B, Structure Of Bace Bound To Sch723873
pdb|3L5E|A Chain A, Structure Of Bace Bound To Sch736062
pdb|3L5E|B Chain B, Structure Of Bace Bound To Sch736062
pdb|3L5F|A Chain A, Structure Of Bace Bound To Sch736201
pdb|3L5F|B Chain B, Structure Of Bace Bound To Sch736201
pdb|4DJU|A Chain A, Structure Of Bace Bound To
2-Imino-3-Methyl-5,5-Diphenylimidazolidin- 4-One
pdb|4DJU|B Chain B, Structure Of Bace Bound To
2-Imino-3-Methyl-5,5-Diphenylimidazolidin- 4-One
pdb|4DJV|A Chain A, Structure Of Bace Bound To
2-Imino-5-(3'-Methoxy-[1,1'-Biphenyl]-3-
Yl)-3-Methyl-5-Phenylimidazolidin-4-One
pdb|4DJV|B Chain B, Structure Of Bace Bound To
2-Imino-5-(3'-Methoxy-[1,1'-Biphenyl]-3-
Yl)-3-Methyl-5-Phenylimidazolidin-4-One
pdb|4DJW|A Chain A, Structure Of Bace Bound To
2-Imino-3-Methyl-5-Phenyl-5-(3-(Pyridin-3-
Yl)phenyl)imidazolidin-4-One
pdb|4DJW|B Chain B, Structure Of Bace Bound To
2-Imino-3-Methyl-5-Phenyl-5-(3-(Pyridin-3-
Yl)phenyl)imidazolidin-4-One
pdb|4DJX|A Chain A, Structure Of Bace Bound To
5-(3-(5-Chloropyridin-3-Yl)phenyl)-5-
Cyclopropyl-2-Imino-3-Methylimidazolidin-4-One
pdb|4DJX|B Chain B, Structure Of Bace Bound To
5-(3-(5-Chloropyridin-3-Yl)phenyl)-5-
Cyclopropyl-2-Imino-3-Methylimidazolidin-4-One
pdb|4DJY|A Chain A, Structure Of Bace Bound To
(R)-5-Cyclopropyl-2-Imino-3-Methyl-5-(3-(5-
(Prop-1-Yn-1-Yl)pyridin-3-Yl)phenyl)imidazolidin-4-One
pdb|4DJY|B Chain B, Structure Of Bace Bound To
(R)-5-Cyclopropyl-2-Imino-3-Methyl-5-(3-(5-
(Prop-1-Yn-1-Yl)pyridin-3-Yl)phenyl)imidazolidin-4-One
pdb|4H1E|A Chain A, Structure Of Bace-1 Bound To
(7ar)-6-Benzoyl-7a-(4-(3-Cyanophenyl)
Thiophen-2-Yl)-3-Methyl-4-Oxohexahydro-1h-Pyrrolo[3,
4-D]pyrimidin- 2(3h)-Iminium
pdb|4H1E|B Chain B, Structure Of Bace-1 Bound To
(7ar)-6-Benzoyl-7a-(4-(3-Cyanophenyl)
Thiophen-2-Yl)-3-Methyl-4-Oxohexahydro-1h-Pyrrolo[3,
4-D]pyrimidin- 2(3h)-Iminium
pdb|4H3J|A Chain A, Structure Of Bace Bound To
2-Fluoro-5-(5-(2-Imino-3-Methyl-4-Oxo-6-
Phenyloctahydro-1h-Pyrrolo[3,
4-D]pyrimidin-7a-Yl)thiophen-2-Yl) Benzonitrile
pdb|4H3J|B Chain B, Structure Of Bace Bound To
2-Fluoro-5-(5-(2-Imino-3-Methyl-4-Oxo-6-
Phenyloctahydro-1h-Pyrrolo[3,
4-D]pyrimidin-7a-Yl)thiophen-2-Yl) Benzonitrile
pdb|4HA5|A Chain A, Structure Of Bace Bound To
(S)-3-(5-(2-Imino-1,4-Dimethyl-6-
Oxohexahydropyrimidin-4-Yl)thiophen-3-Yl)benzonitrile
pdb|4HA5|B Chain B, Structure Of Bace Bound To
(S)-3-(5-(2-Imino-1,4-Dimethyl-6-
Oxohexahydropyrimidin-4-Yl)thiophen-3-Yl)benzonitrile
pdb|4H3F|A Chain A, Structure Of Bace Bound To
3-(5-((7ar)-2-Imino-6-(6-Methoxypyridin-2-
Yl)-3-Methyl-4-Oxooctahydro-1h-Pyrrolo[3,
4-D]pyrimidin-7a-Yl) Thiophen-3-Yl)benzonitrile
pdb|4H3F|B Chain B, Structure Of Bace Bound To
3-(5-((7ar)-2-Imino-6-(6-Methoxypyridin-2-
Yl)-3-Methyl-4-Oxooctahydro-1h-Pyrrolo[3,
4-D]pyrimidin-7a-Yl) Thiophen-3-Yl)benzonitrile
pdb|4H3G|A Chain A, Structure Of Bace Bound To
2-((7ar)-7a-(4-(3-Cyanophenyl)thiophen-2-
Yl)-2-Imino-3-Methyl-4-Oxohexahydro-1h-Pyrrolo[3,
4-D]pyrimidin-6(2h)- Yl)nicotinonitrile
pdb|4H3G|B Chain B, Structure Of Bace Bound To
2-((7ar)-7a-(4-(3-Cyanophenyl)thiophen-2-
Yl)-2-Imino-3-Methyl-4-Oxohexahydro-1h-Pyrrolo[3,
4-D]pyrimidin-6(2h)- Yl)nicotinonitrile
pdb|4H3I|A Chain A, Structure Of Bace Bound To
3-(5-((7ar)-2-Imino-6-(3-Methoxypyridin-2-
Yl)-3-Methyl-4-Oxooctahydro-1h-Pyrrolo[3,
4-D]pyrimidin-7a-Yl) Thiophen-3-Yl)benzonitrile
pdb|4H3I|B Chain B, Structure Of Bace Bound To
3-(5-((7ar)-2-Imino-6-(3-Methoxypyridin-2-
Yl)-3-Methyl-4-Oxooctahydro-1h-Pyrrolo[3,
4-D]pyrimidin-7a-Yl) Thiophen-3-Yl)benzonitrile
Length = 414
Score = 87.4 bits (215), Expect = 1e-17, Method: Compositional matrix adjust.
Identities = 73/243 (30%), Positives = 117/243 (48%), Gaps = 21/243 (8%)
Query: 80 YYGEIGIGSPPQSFSVVFDTGSSNLWVPSSKCLFSISCYLHSRYRARLSRTYTKIGVPCK 139
YY E+ +GSPPQ+ +++ DTGSSN V ++ F LH Y+ +LS TY +
Sbjct: 35 YYVEMTVGSPPQTLNILVDTGSSNFAVGAAPHPF-----LHRYYQRQLSSTYRDLRKGVY 89
Query: 140 IHYGSGQISGFFSQDNVKI--GDMIIKDQEFVEVTKEGLLPFLALQFDGILGLGFRDIAA 197
+ Y G+ G D V I G + +T+ ++GILGL + +IA
Sbjct: 90 VPYTQGKWEGELGTDLVSIPHGPNVTVRANIAAITESDKFFINGSNWEGILGLAYAEIAR 149
Query: 198 GNAT--PLWYNMVRQGHISQKIFSLW-------LNQ-DPNSEVGGEIIFGGFDWRHFRGS 247
+ + P + ++V+Q H+ +FSL LNQ + + VGG +I GG D + GS
Sbjct: 150 PDDSLEPFFDSLVKQTHVP-NLFSLQLCGAGFPLNQSEVLASVGGSMIIGGIDHSLYTGS 208
Query: 248 HIYVPITEKGYWQIKVGDILIENSSTGF-CEDGC--TAILDSGTSVLAGPTTVVAQINHA 304
Y PI + Y+++ + + I C++ +I+DSGT+ L P V +
Sbjct: 209 LWYTPIRREWYYEVIIVRVEINGQDLKMDCKEYNYDKSIVDSGTTNLRLPKKVFEAAVKS 268
Query: 305 IGA 307
I A
Sbjct: 269 IKA 271
>pdb|3HVG|A Chain A, Structure Of Bace (Beta Secretase) In Complex With Ev0
pdb|3HVG|B Chain B, Structure Of Bace (Beta Secretase) In Complex With Ev0
pdb|3HVG|C Chain C, Structure Of Bace (Beta Secretase) In Complex With Ev0
pdb|3HW1|A Chain A, Structure Of Bace (Beta Secretase) In Complex With Ligand
Ev2
pdb|3HW1|B Chain B, Structure Of Bace (Beta Secretase) In Complex With Ligand
Ev2
pdb|3HW1|C Chain C, Structure Of Bace (Beta Secretase) In Complex With Ligand
Ev2
pdb|3MSJ|A Chain A, Structure Of Bace (Beta Secretase) In Complex With
Inhibitor
pdb|3MSJ|B Chain B, Structure Of Bace (Beta Secretase) In Complex With
Inhibitor
pdb|3MSJ|C Chain C, Structure Of Bace (Beta Secretase) In Complex With
Inhibitor
Length = 411
Score = 87.4 bits (215), Expect = 1e-17, Method: Compositional matrix adjust.
Identities = 73/243 (30%), Positives = 117/243 (48%), Gaps = 21/243 (8%)
Query: 80 YYGEIGIGSPPQSFSVVFDTGSSNLWVPSSKCLFSISCYLHSRYRARLSRTYTKIGVPCK 139
YY E+ +GSPPQ+ +++ DTGSSN V ++ F LH Y+ +LS TY +
Sbjct: 33 YYVEMTVGSPPQTLNILVDTGSSNFAVGAAPHPF-----LHRYYQRQLSSTYRDLRKGVY 87
Query: 140 IHYGSGQISGFFSQDNVKI--GDMIIKDQEFVEVTKEGLLPFLALQFDGILGLGFRDIAA 197
+ Y G+ G D V I G + +T+ ++GILGL + +IA
Sbjct: 88 VPYTQGKWEGELGTDLVSIPHGPNVTVRANIAAITESDKFFINGSNWEGILGLAYAEIAR 147
Query: 198 GNAT--PLWYNMVRQGHISQKIFSLW-------LNQ-DPNSEVGGEIIFGGFDWRHFRGS 247
+ + P + ++V+Q H+ +FSL LNQ + + VGG +I GG D + GS
Sbjct: 148 PDDSLEPFFDSLVKQTHVP-NLFSLQLCGAGFPLNQSEVLASVGGSMIIGGIDHSLYTGS 206
Query: 248 HIYVPITEKGYWQIKVGDILIENSSTGF-CEDGC--TAILDSGTSVLAGPTTVVAQINHA 304
Y PI + Y+++ + + I C++ +I+DSGT+ L P V +
Sbjct: 207 LWYTPIRREWYYEVIIVRVEINGQDLKMDCKEYNYDKSIVDSGTTNLRLPKKVFEAAVKS 266
Query: 305 IGA 307
I A
Sbjct: 267 IKA 269
>pdb|3IXK|A Chain A, Potent Beta-Secretase 1 Inhibitor
pdb|3IXK|B Chain B, Potent Beta-Secretase 1 Inhibitor
pdb|3IXK|C Chain C, Potent Beta-Secretase 1 Inhibitor
pdb|3KYR|A Chain A, Bace-1 In Complex With A Norstatine Type Inhibitor
pdb|3KYR|B Chain B, Bace-1 In Complex With A Norstatine Type Inhibitor
pdb|3KYR|C Chain C, Bace-1 In Complex With A Norstatine Type Inhibitor
Length = 405
Score = 87.4 bits (215), Expect = 1e-17, Method: Compositional matrix adjust.
Identities = 73/243 (30%), Positives = 117/243 (48%), Gaps = 21/243 (8%)
Query: 80 YYGEIGIGSPPQSFSVVFDTGSSNLWVPSSKCLFSISCYLHSRYRARLSRTYTKIGVPCK 139
YY E+ +GSPPQ+ +++ DTGSSN V ++ F LH Y+ +LS TY +
Sbjct: 34 YYVEMTVGSPPQTLNILVDTGSSNFAVGAAPHPF-----LHRYYQRQLSSTYRDLRKGVY 88
Query: 140 IHYGSGQISGFFSQDNVKI--GDMIIKDQEFVEVTKEGLLPFLALQFDGILGLGFRDIAA 197
+ Y G+ G D V I G + +T+ ++GILGL + +IA
Sbjct: 89 VPYTQGKWEGELGTDLVSIPHGPNVTVRANIAAITESDKFFINGSNWEGILGLAYAEIAR 148
Query: 198 GNAT--PLWYNMVRQGHISQKIFSLW-------LNQ-DPNSEVGGEIIFGGFDWRHFRGS 247
+ + P + ++V+Q H+ +FSL LNQ + + VGG +I GG D + GS
Sbjct: 149 PDDSLEPFFDSLVKQTHVP-NLFSLQLCGAGFPLNQSEVLASVGGSMIIGGIDHSLYTGS 207
Query: 248 HIYVPITEKGYWQIKVGDILIENSSTGF-CEDGC--TAILDSGTSVLAGPTTVVAQINHA 304
Y PI + Y+++ + + I C++ +I+DSGT+ L P V +
Sbjct: 208 LWYTPIRREWYYEVIIVRVEINGQDLKMDCKEYNYDKSIVDSGTTNLRLPKKVFEAAVKS 267
Query: 305 IGA 307
I A
Sbjct: 268 IKA 270
>pdb|2OF0|A Chain A, X-Ray Crystal Structure Of Beta Secretase Complexed With
Compound 5
pdb|2OHK|A Chain A, X-Ray Crystal Structure Of Beta Secretase Complexed With
1- Amino-Isoquinoline
pdb|2OHL|A Chain A, X-Ray Crystal Structure Of Beta Secretase Complexed With
2- Aminoquinoline
pdb|2OHM|A Chain A, X-Ray Crystal Structure Of Beta Secretase Complexed With
N~3~-Benzylpyridine-2,3-Diamine
pdb|2OHN|A Chain A, X-Ray Crystal Structure Of Beta Secretase Complexed With
4- (4-Fluorobenzyl)piperidine
pdb|2OHQ|A Chain A, X-Ray Crystal Structure Of Beta Secretase Complexed With
Compound 4
pdb|2OHR|A Chain A, X-Ray Crystal Structure Of Beta Secretase Complexed With
Compound 6a
pdb|2OHS|A Chain A, X-Ray Crystal Structure Of Beta Secretase Complexed With
Compound 6b
pdb|2OHT|A Chain A, X-Ray Crystal Structure Of Beta Secretase Complexed With
Compound 7
pdb|2OHU|A Chain A, X-Ray Crystal Structure Of Beta Secretase Complexed With
Compound 8b
pdb|2OHP|A Chain A, X-ray Crystal Structure Of Beta Secretase Complexed With
Compound 3
Length = 402
Score = 87.4 bits (215), Expect = 1e-17, Method: Compositional matrix adjust.
Identities = 73/243 (30%), Positives = 117/243 (48%), Gaps = 21/243 (8%)
Query: 80 YYGEIGIGSPPQSFSVVFDTGSSNLWVPSSKCLFSISCYLHSRYRARLSRTYTKIGVPCK 139
YY E+ +GSPPQ+ +++ DTGSSN V ++ F LH Y+ +LS TY +
Sbjct: 31 YYVEMTVGSPPQTLNILVDTGSSNFAVGAAPHPF-----LHRYYQRQLSSTYRDLRKGVY 85
Query: 140 IHYGSGQISGFFSQDNVKI--GDMIIKDQEFVEVTKEGLLPFLALQFDGILGLGFRDIAA 197
+ Y G+ G D V I G + +T+ ++GILGL + +IA
Sbjct: 86 VPYTQGKWEGELGTDLVSIPHGPNVTVRANIAAITESDKFFINGSNWEGILGLAYAEIAR 145
Query: 198 GNAT--PLWYNMVRQGHISQKIFSLW-------LNQ-DPNSEVGGEIIFGGFDWRHFRGS 247
+ + P + ++V+Q H+ +FSL LNQ + + VGG +I GG D + GS
Sbjct: 146 PDDSLEPFFDSLVKQTHVP-NLFSLQLCGAGFPLNQSEVLASVGGSMIIGGIDHSLYTGS 204
Query: 248 HIYVPITEKGYWQIKVGDILIENSSTGF-CEDGC--TAILDSGTSVLAGPTTVVAQINHA 304
Y PI + Y+++ + + I C++ +I+DSGT+ L P V +
Sbjct: 205 LWYTPIRREWYYEVIIVRVEINGQDLKMDCKEYNYDKSIVDSGTTNLRLPKKVFEAAVKS 264
Query: 305 IGA 307
I A
Sbjct: 265 IKA 267
>pdb|3CKP|A Chain A, Crystal Structure Of Bace-1 In Complex With Inhibitor
pdb|3CKP|B Chain B, Crystal Structure Of Bace-1 In Complex With Inhibitor
pdb|3CKP|C Chain C, Crystal Structure Of Bace-1 In Complex With Inhibitor
pdb|3CKR|A Chain A, Crystal Structure Of Bace-1 In Complex With Inhibitor
pdb|3CKR|B Chain B, Crystal Structure Of Bace-1 In Complex With Inhibitor
pdb|3CKR|C Chain C, Crystal Structure Of Bace-1 In Complex With Inhibitor
pdb|4FSL|A Chain A, Crystal Structure Of Beta-Site App-Cleaving Enzyme 1
(Bace-Db-Mut) Complex With N-(N-(4-
Acetamido-3-Chloro-5-Methylbenzyl) Carbamimidoyl)-3-(4-
Methoxyphenyl)-5-Methyl-4-Isothiazolecarboxamide
pdb|4FSL|B Chain B, Crystal Structure Of Beta-Site App-Cleaving Enzyme 1
(Bace-Db-Mut) Complex With N-(N-(4-
Acetamido-3-Chloro-5-Methylbenzyl) Carbamimidoyl)-3-(4-
Methoxyphenyl)-5-Methyl-4-Isothiazolecarboxamide
pdb|4FSL|D Chain D, Crystal Structure Of Beta-Site App-Cleaving Enzyme 1
(Bace-Db-Mut) Complex With N-(N-(4-
Acetamido-3-Chloro-5-Methylbenzyl) Carbamimidoyl)-3-(4-
Methoxyphenyl)-5-Methyl-4-Isothiazolecarboxamide
pdb|4FSL|E Chain E, Crystal Structure Of Beta-Site App-Cleaving Enzyme 1
(Bace-Db-Mut) Complex With N-(N-(4-
Acetamido-3-Chloro-5-Methylbenzyl) Carbamimidoyl)-3-(4-
Methoxyphenyl)-5-Methyl-4-Isothiazolecarboxamide
Length = 412
Score = 87.4 bits (215), Expect = 1e-17, Method: Compositional matrix adjust.
Identities = 73/243 (30%), Positives = 117/243 (48%), Gaps = 21/243 (8%)
Query: 80 YYGEIGIGSPPQSFSVVFDTGSSNLWVPSSKCLFSISCYLHSRYRARLSRTYTKIGVPCK 139
YY E+ +GSPPQ+ +++ DTGSSN V ++ F LH Y+ +LS TY +
Sbjct: 33 YYVEMTVGSPPQTLNILVDTGSSNFAVGAAPHPF-----LHRYYQRQLSSTYRDLRKGVY 87
Query: 140 IHYGSGQISGFFSQDNVKI--GDMIIKDQEFVEVTKEGLLPFLALQFDGILGLGFRDIAA 197
+ Y G+ G D V I G + +T+ ++GILGL + +IA
Sbjct: 88 VPYTQGKWEGELGTDLVSIPHGPNVTVRANIAAITESDKFFINGSNWEGILGLAYAEIAR 147
Query: 198 GNAT--PLWYNMVRQGHISQKIFSLW-------LNQ-DPNSEVGGEIIFGGFDWRHFRGS 247
+ + P + ++V+Q H+ +FSL LNQ + + VGG +I GG D + GS
Sbjct: 148 PDDSLEPFFDSLVKQTHVP-NLFSLQLCGAGFPLNQSEVLASVGGSMIIGGIDHSLYTGS 206
Query: 248 HIYVPITEKGYWQIKVGDILIENSSTGF-CEDGC--TAILDSGTSVLAGPTTVVAQINHA 304
Y PI + Y+++ + + I C++ +I+DSGT+ L P V +
Sbjct: 207 LWYTPIRREWYYEVIIVRVEINGQDLKMDCKEYNYDKSIVDSGTTNLRLPKKVFEAAVKS 266
Query: 305 IGA 307
I A
Sbjct: 267 IKA 269
>pdb|3R1G|B Chain B, Structure Basis Of Allosteric Inhibition Of Bace1 By An
Exosite- Binding Antibody
Length = 402
Score = 87.4 bits (215), Expect = 1e-17, Method: Compositional matrix adjust.
Identities = 73/243 (30%), Positives = 117/243 (48%), Gaps = 21/243 (8%)
Query: 80 YYGEIGIGSPPQSFSVVFDTGSSNLWVPSSKCLFSISCYLHSRYRARLSRTYTKIGVPCK 139
YY E+ +GSPPQ+ +++ DTGSSN V ++ F LH Y+ +LS TY +
Sbjct: 21 YYVEMTVGSPPQTLNILVDTGSSNFAVGAAPHPF-----LHRYYQRQLSSTYRDLRKGVY 75
Query: 140 IHYGSGQISGFFSQDNVKI--GDMIIKDQEFVEVTKEGLLPFLALQFDGILGLGFRDIAA 197
+ Y G+ G D V I G + +T+ ++GILGL + +IA
Sbjct: 76 VPYTQGKWEGELGTDLVSIPHGPNVTVRANIAAITESDKFFINGSNWEGILGLAYAEIAR 135
Query: 198 GNAT--PLWYNMVRQGHISQKIFSLW-------LNQ-DPNSEVGGEIIFGGFDWRHFRGS 247
+ + P + ++V+Q H+ +FSL LNQ + + VGG +I GG D + GS
Sbjct: 136 PDDSLEPFFDSLVKQTHVP-NLFSLQLCGAGFPLNQSEVLASVGGSMIIGGIDHSLYTGS 194
Query: 248 HIYVPITEKGYWQIKVGDILIENSSTGF-CEDGC--TAILDSGTSVLAGPTTVVAQINHA 304
Y PI + Y+++ + + I C++ +I+DSGT+ L P V +
Sbjct: 195 LWYTPIRREWYYEVIIVRVEINGQDLKMDCKEYNYDKSIVDSGTTNLRLPKKVFEAAVKS 254
Query: 305 IGA 307
I A
Sbjct: 255 IKA 257
>pdb|1J71|A Chain A, Structure Of The Extracellular Aspartic Proteinase From
Candida Tropicalis Yeast
Length = 334
Score = 87.4 bits (215), Expect = 1e-17, Method: Compositional matrix adjust.
Identities = 71/241 (29%), Positives = 114/241 (47%), Gaps = 27/241 (11%)
Query: 80 YYGEIGIGSPPQSFSVVFDTGSSNLWV--PSSKCLFSIS------CYLHSRYRARLSRTY 131
Y +I +GS Q +VV DTGSS+LWV ++C + S C + S +
Sbjct: 14 YAADIVVGSNQQKQTVVIDTGSSDLWVVDTDAECQVTYSGQTNNFCKQEGTFDPSSSSSA 73
Query: 132 TKIGVPCKIHYGSGQIS-GFFSQDNVKIGDMIIKDQEFVEVTKEGLLPFLALQFDGILGL 190
+ I YG S G F +D V G + IK+Q+F +VT + GI+G+
Sbjct: 74 QNLNQDFSIEYGDLTSSQGSFYKDTVGFGGISIKNQQFADVTTTSVDQ-------GIMGI 126
Query: 191 GFRDIAAG----NATPLWYNMVRQGHISQKIFSLWLNQDPNSEVGGEIIFGGFDWRHFRG 246
GF AG + P+ + +QG I++ +SL+LN + S G+IIFGG D + G
Sbjct: 127 GFTADEAGYNLYDNVPV--TLKKQGIINKNAYSLYLNSEDAST--GKIIFGGVDNAKYTG 182
Query: 247 SHIYVPITEKGYWQIKVGDILIENSSTGFCEDGCTAILDSGTSVLAGPTTVVAQINHAIG 306
+ +P+T ++ +G I + +S D +LDSGT++ + + +G
Sbjct: 183 TLTALPVTSSVELRVHLGSINFDGTSVSTNAD---VVLDSGTTITYFSQSTADKFARIVG 239
Query: 307 A 307
A
Sbjct: 240 A 240
>pdb|1YM4|A Chain A, Crystal Structure Of Human Beta Secretase Complexed With
Nvp-Amk640
pdb|1YM4|B Chain B, Crystal Structure Of Human Beta Secretase Complexed With
Nvp-Amk640
pdb|1YM4|C Chain C, Crystal Structure Of Human Beta Secretase Complexed With
Nvp-Amk640
pdb|3K5D|A Chain A, Crystal Structure Of Bace-1 In Complex With Ahm178
pdb|3K5D|B Chain B, Crystal Structure Of Bace-1 In Complex With Ahm178
pdb|3K5D|C Chain C, Crystal Structure Of Bace-1 In Complex With Ahm178
pdb|3MSK|A Chain A, Fragment Based Discovery And Optimisation Of Bace-1
Inhibitors
pdb|3MSL|A Chain A, Fragment Based Discovery And Optimisation Of Bace-1
Inhibitors
pdb|3S2O|A Chain A, Fragment Based Discovery And Optimisation Of Bace-1
Inhibitors
pdb|4D85|A Chain A, Crystal Structure Of Human Beta Secretase In Complex With
Nvp-Bvi151
Length = 408
Score = 87.4 bits (215), Expect = 1e-17, Method: Compositional matrix adjust.
Identities = 73/243 (30%), Positives = 117/243 (48%), Gaps = 21/243 (8%)
Query: 80 YYGEIGIGSPPQSFSVVFDTGSSNLWVPSSKCLFSISCYLHSRYRARLSRTYTKIGVPCK 139
YY E+ +GSPPQ+ +++ DTGSSN V ++ F LH Y+ +LS TY +
Sbjct: 30 YYVEMTVGSPPQTLNILVDTGSSNFAVGAAPHPF-----LHRYYQRQLSSTYRDLRKGVY 84
Query: 140 IHYGSGQISGFFSQDNVKI--GDMIIKDQEFVEVTKEGLLPFLALQFDGILGLGFRDIAA 197
+ Y G+ G D V I G + +T+ ++GILGL + +IA
Sbjct: 85 VPYTQGKWEGELGTDLVSIPHGPNVTVRANIAAITESDKFFINGSNWEGILGLAYAEIAR 144
Query: 198 GNAT--PLWYNMVRQGHISQKIFSLW-------LNQ-DPNSEVGGEIIFGGFDWRHFRGS 247
+ + P + ++V+Q H+ +FSL LNQ + + VGG +I GG D + GS
Sbjct: 145 PDDSLEPFFDSLVKQTHVP-NLFSLQLCGAGFPLNQSEVLASVGGSMIIGGIDHSLYTGS 203
Query: 248 HIYVPITEKGYWQIKVGDILIENSSTGF-CEDGC--TAILDSGTSVLAGPTTVVAQINHA 304
Y PI + Y+++ + + I C++ +I+DSGT+ L P V +
Sbjct: 204 LWYTPIRREWYYEVIIVRVEINGQDLKMDCKEYNYDKSIVDSGTTNLRLPKKVFEAAVKS 263
Query: 305 IGA 307
I A
Sbjct: 264 IKA 266
>pdb|1YM2|A Chain A, Crystal Structure Of Human Beta Secretase Complexed With
Nvp-Aur200
pdb|1YM2|B Chain B, Crystal Structure Of Human Beta Secretase Complexed With
Nvp-Aur200
pdb|1YM2|C Chain C, Crystal Structure Of Human Beta Secretase Complexed With
Nvp-Aur200
pdb|2F3E|A Chain A, Crystal Structure Of The Bace Complex With Axq093, A
Macrocyclic Inhibitor
pdb|2F3E|B Chain B, Crystal Structure Of The Bace Complex With Axq093, A
Macrocyclic Inhibitor
pdb|2F3E|C Chain C, Crystal Structure Of The Bace Complex With Axq093, A
Macrocyclic Inhibitor
pdb|2F3F|A Chain A, Crystal Structure Of The Bace Complex With Bdf488, A
Macrocyclic Inhibitor
pdb|2F3F|B Chain B, Crystal Structure Of The Bace Complex With Bdf488, A
Macrocyclic Inhibitor
pdb|2F3F|C Chain C, Crystal Structure Of The Bace Complex With Bdf488, A
Macrocyclic Inhibitor
pdb|3DUY|A Chain A, Crystal Structure Of Human Beta-Secretase In Complex With
Nvp-Afj144
pdb|3DUY|B Chain B, Crystal Structure Of Human Beta-Secretase In Complex With
Nvp-Afj144
pdb|3DUY|C Chain C, Crystal Structure Of Human Beta-Secretase In Complex With
Nvp-Afj144
pdb|3DV1|A Chain A, Crystal Structure Of Human Beta-Secretase In Complex With
Nvp-Arv999
pdb|3DV1|B Chain B, Crystal Structure Of Human Beta-Secretase In Complex With
Nvp-Arv999
pdb|3DV1|C Chain C, Crystal Structure Of Human Beta-Secretase In Complex With
Nvp-Arv999
pdb|3DV5|A Chain A, Crystal Structure Of Human Beta-Secretase In Complex With
Nvp-Bav544
pdb|3DV5|B Chain B, Crystal Structure Of Human Beta-Secretase In Complex With
Nvp-Bav544
pdb|3DV5|C Chain C, Crystal Structure Of Human Beta-Secretase In Complex With
Nvp-Bav544
pdb|3K5C|A Chain A, Human Bace-1 Complex With Nb-216
pdb|3K5C|B Chain B, Human Bace-1 Complex With Nb-216
pdb|3K5C|C Chain C, Human Bace-1 Complex With Nb-216
pdb|3K5F|A Chain A, Human Bace-1 Complex With Ayh011
pdb|3K5F|B Chain B, Human Bace-1 Complex With Ayh011
pdb|3K5F|C Chain C, Human Bace-1 Complex With Ayh011
pdb|3K5G|A Chain A, Human Bace-1 Complex With Bjc060
pdb|3K5G|B Chain B, Human Bace-1 Complex With Bjc060
pdb|3K5G|C Chain C, Human Bace-1 Complex With Bjc060
pdb|3PI5|A Chain A, Crystal Structure Of Human Beta Secretase In Complex With
Bfg356
pdb|3PI5|B Chain B, Crystal Structure Of Human Beta Secretase In Complex With
Bfg356
pdb|3PI5|C Chain C, Crystal Structure Of Human Beta Secretase In Complex With
Bfg356
pdb|3QBH|A Chain A, Structure Based Design, Synthesis And Sar Of Cyclic
Hydroxyethylamine (Hea) Bace-1 Inhibitors
pdb|3QBH|B Chain B, Structure Based Design, Synthesis And Sar Of Cyclic
Hydroxyethylamine (Hea) Bace-1 Inhibitors
pdb|3QBH|C Chain C, Structure Based Design, Synthesis And Sar Of Cyclic
Hydroxyethylamine (Hea) Bace-1 Inhibitors
pdb|3VEU|A Chain A, Crystal Structure Of Human Beta Secretase In Complex With
Nvp-Avi326
pdb|3VF3|A Chain A, Crystal Structure Of Human Beta Secretase In Complex With
Nvp-Bqq711
pdb|3VG1|A Chain A, Crystal Structure Of Human Beta Secretase In Complex With
Nvp-Bur436, Derived From A Soaking Experiment
pdb|4D83|A Chain A, Crystal Structure Of Human Beta Secretase In Complex With
Nvp-Bur436, Derived From A Co-Crystallization Experiment
pdb|4D83|B Chain B, Crystal Structure Of Human Beta Secretase In Complex With
Nvp-Bur436, Derived From A Co-Crystallization Experiment
pdb|4D83|C Chain C, Crystal Structure Of Human Beta Secretase In Complex With
Nvp-Bur436, Derived From A Co-Crystallization Experiment
pdb|4D88|A Chain A, Crystal Structure Of Human Beta Secretase In Complex With
Nvp-Bxq490
pdb|4D89|A Chain A, Crystal Structure Of Human Beta Secretase In Complex With
Nvp-Bxd552, Derived From A Soaking Experiment
pdb|4D8C|A Chain A, Crystal Structure Of Human Beta Secretase In Complex With
Nvp-Bxd552, Derived From A Co-Crystallization Experiment
pdb|4D8C|B Chain B, Crystal Structure Of Human Beta Secretase In Complex With
Nvp-Bxd552, Derived From A Co-Crystallization Experiment
pdb|4D8C|C Chain C, Crystal Structure Of Human Beta Secretase In Complex With
Nvp-Bxd552, Derived From A Co-Crystallization Experiment
Length = 402
Score = 87.4 bits (215), Expect = 1e-17, Method: Compositional matrix adjust.
Identities = 73/243 (30%), Positives = 117/243 (48%), Gaps = 21/243 (8%)
Query: 80 YYGEIGIGSPPQSFSVVFDTGSSNLWVPSSKCLFSISCYLHSRYRARLSRTYTKIGVPCK 139
YY E+ +GSPPQ+ +++ DTGSSN V ++ F LH Y+ +LS TY +
Sbjct: 30 YYVEMTVGSPPQTLNILVDTGSSNFAVGAAPHPF-----LHRYYQRQLSSTYRDLRKGVY 84
Query: 140 IHYGSGQISGFFSQDNVKI--GDMIIKDQEFVEVTKEGLLPFLALQFDGILGLGFRDIAA 197
+ Y G+ G D V I G + +T+ ++GILGL + +IA
Sbjct: 85 VPYTQGKWEGELGTDLVSIPHGPNVTVRANIAAITESDKFFINGSNWEGILGLAYAEIAR 144
Query: 198 GNAT--PLWYNMVRQGHISQKIFSLW-------LNQ-DPNSEVGGEIIFGGFDWRHFRGS 247
+ + P + ++V+Q H+ +FSL LNQ + + VGG +I GG D + GS
Sbjct: 145 PDDSLEPFFDSLVKQTHVP-NLFSLQLCGAGFPLNQSEVLASVGGSMIIGGIDHSLYTGS 203
Query: 248 HIYVPITEKGYWQIKVGDILIENSSTGF-CEDGC--TAILDSGTSVLAGPTTVVAQINHA 304
Y PI + Y+++ + + I C++ +I+DSGT+ L P V +
Sbjct: 204 LWYTPIRREWYYEVIIVRVEINGQDLKMDCKEYNYDKSIVDSGTTNLRLPKKVFEAAVKS 263
Query: 305 IGA 307
I A
Sbjct: 264 IKA 266
>pdb|3VV6|A Chain A, Crystal Structure Of Beta Secetase In Complex With
2-Amino-3-Methyl-6- ((1s,
2r)-2-Phenylcyclopropyl)pyrimidin-4(3h)-One
pdb|3VV7|A Chain A, Crystal Structure Of Beta Secetase In Complex With
2-Amino-6-((1s,2r)-
2-(3'-Methoxybiphenyl-3-Yl)cyclopropyl)-3-
Methylpyrimidin-4(3h)-One
pdb|3VV8|A Chain A, Crystal Structure Of Beta Secetase In Complex With
2-Amino-3-Methyl-6-
((1s,
2r)-2-(3'-Methylbiphenyl-4-Yl)cyclopropyl)pyrimidin-
4(3h)-One
Length = 416
Score = 87.0 bits (214), Expect = 1e-17, Method: Compositional matrix adjust.
Identities = 73/243 (30%), Positives = 117/243 (48%), Gaps = 21/243 (8%)
Query: 80 YYGEIGIGSPPQSFSVVFDTGSSNLWVPSSKCLFSISCYLHSRYRARLSRTYTKIGVPCK 139
YY E+ +GSPPQ+ +++ DTGSSN V ++ F LH Y+ +LS TY +
Sbjct: 37 YYVEMTVGSPPQTLNILVDTGSSNFAVGAAPHPF-----LHRYYQRQLSSTYRDLRKGVY 91
Query: 140 IHYGSGQISGFFSQDNVKI--GDMIIKDQEFVEVTKEGLLPFLALQFDGILGLGFRDIAA 197
+ Y G+ G D V I G + +T+ ++GILGL + +IA
Sbjct: 92 VPYTQGKWEGELGTDLVSIPHGPNVTVRANIAAITESDKFFINGSNWEGILGLAYAEIAR 151
Query: 198 GNAT--PLWYNMVRQGHISQKIFSLW-------LNQ-DPNSEVGGEIIFGGFDWRHFRGS 247
+ + P + ++V+Q H+ +FSL LNQ + + VGG +I GG D + GS
Sbjct: 152 PDDSLEPFFDSLVKQTHVP-NLFSLQLCGAGFPLNQSEVLASVGGSMIIGGIDHSLYTGS 210
Query: 248 HIYVPITEKGYWQIKVGDILIENSSTGF-CEDGC--TAILDSGTSVLAGPTTVVAQINHA 304
Y PI + Y+++ + + I C++ +I+DSGT+ L P V +
Sbjct: 211 LWYTPIRREWYYEVIIVRVEINGQDLKMDCKEYNYDKSIVDSGTTNLRLPKKVFEAAVKS 270
Query: 305 IGA 307
I A
Sbjct: 271 IKA 273
>pdb|3EXO|A Chain A, Crystal Structure Of Bace1 Bound To Inhibitor
Length = 413
Score = 87.0 bits (214), Expect = 1e-17, Method: Compositional matrix adjust.
Identities = 73/243 (30%), Positives = 117/243 (48%), Gaps = 21/243 (8%)
Query: 80 YYGEIGIGSPPQSFSVVFDTGSSNLWVPSSKCLFSISCYLHSRYRARLSRTYTKIGVPCK 139
YY E+ +GSPPQ+ +++ DTGSSN V ++ F LH Y+ +LS TY +
Sbjct: 34 YYVEMTVGSPPQTLNILVDTGSSNFAVGAAPHPF-----LHRYYQRQLSSTYRDLRKGVY 88
Query: 140 IHYGSGQISGFFSQDNVKI--GDMIIKDQEFVEVTKEGLLPFLALQFDGILGLGFRDIAA 197
+ Y G +G D V I G + +T+ ++GILGL + +IA
Sbjct: 89 VPYTQGAWAGELGTDLVSIPHGPNVTVRANIAAITESDKFFINGSNWEGILGLAYAEIAR 148
Query: 198 GNAT--PLWYNMVRQGHISQKIFSLW-------LNQ-DPNSEVGGEIIFGGFDWRHFRGS 247
+ + P + ++V+Q H+ +FSL LNQ + + VGG +I GG D + GS
Sbjct: 149 PDDSLEPFFDSLVKQTHVP-NLFSLQLCGAGFPLNQSEVLASVGGSMIIGGIDHSLYTGS 207
Query: 248 HIYVPITEKGYWQIKVGDILIENSSTGF-CEDGC--TAILDSGTSVLAGPTTVVAQINHA 304
Y PI + Y+++ + + I C++ +I+DSGT+ L P V +
Sbjct: 208 LWYTPIRREWYYEVIIVRVEINGQDLKMDCKEYNYDKSIVDSGTTNLRLPKKVFEAAVKS 267
Query: 305 IGA 307
I A
Sbjct: 268 IKA 270
>pdb|2QZL|A Chain A, Crystal Structure Of Human Beta Secretase Complexed With
Ixs
Length = 411
Score = 87.0 bits (214), Expect = 1e-17, Method: Compositional matrix adjust.
Identities = 73/243 (30%), Positives = 117/243 (48%), Gaps = 21/243 (8%)
Query: 80 YYGEIGIGSPPQSFSVVFDTGSSNLWVPSSKCLFSISCYLHSRYRARLSRTYTKIGVPCK 139
YY E+ +GSPPQ+ +++ DTGSSN V ++ F LH Y+ +LS TY +
Sbjct: 40 YYVEMTVGSPPQTLNILVDTGSSNFAVGAAPHPF-----LHRYYQRQLSSTYRDLRKGVY 94
Query: 140 IHYGSGQISGFFSQDNVKI--GDMIIKDQEFVEVTKEGLLPFLALQFDGILGLGFRDIAA 197
+ Y G +G D V I G + +T+ ++GILGL + +IA
Sbjct: 95 VPYTQGAWAGELGTDLVSIPHGPNVTVRANIAAITESDKFFINGSNWEGILGLAYAEIAR 154
Query: 198 GNAT--PLWYNMVRQGHISQKIFSLW-------LNQ-DPNSEVGGEIIFGGFDWRHFRGS 247
+ + P + ++V+Q H+ +FSL LNQ + + VGG +I GG D + GS
Sbjct: 155 PDDSLEPFFDSLVKQTHVP-NLFSLQLCGAGFPLNQSEVLASVGGSMIIGGIDHSLYTGS 213
Query: 248 HIYVPITEKGYWQIKVGDILIENSSTGF-CEDGC--TAILDSGTSVLAGPTTVVAQINHA 304
Y PI + Y+++ + + I C++ +I+DSGT+ L P V +
Sbjct: 214 LWYTPIRREWYYEVIIVRVEINGQDLKMDCKEYNYDKSIVDSGTTNLRLPKKVFEAAVKS 273
Query: 305 IGA 307
I A
Sbjct: 274 IKA 276
>pdb|1TQF|A Chain A, Crystal Structure Of Human Beta Secretase Complexed With
Inhibitor
pdb|2B8L|A Chain A, Crystal Structure Of Human Beta Secretase Complexed With
Inhibitor
pdb|2B8V|A Chain A, Crystal Structure Of Human Beta-Secretase Complexed With
L- L000430,469
pdb|2IRZ|A Chain A, Crystal Structure Of Human Beta-Secretase Complexed With
Inhibitor
pdb|2IS0|A Chain A, Crystal Structure Of Human Beta-Secretase Complexed With
Inhibitor
pdb|2PH6|A Chain A, Crystal Structure Of Human Beta Secretase Complexed With
Inhibitor
pdb|2OAH|A Chain A, Crystal Structure Of Human Beta Secretase Complexed With
Inhibitor
pdb|2P8H|A Chain A, Crystal Structure Of Human Beta Secretase Complexed With
Inhibitor
pdb|2NTR|A Chain A, Crystal Structure Of Human Bace-1 Bound To Inhibitor
pdb|2PH8|A Chain A, Crystal Structure Of Human Beta Secretase Complexed With
Inhibitor
pdb|2QZK|A Chain A, Crystal Structure Of Human Beta Secretase Complexed With
I21
pdb|2ZJM|A Chain A, Crystal Structure Of The Human Bace1 Catalytic Domain In
Complex With
N-[1-(5-Chloro-2-Isopropoxy-3-Methoxy-Benzyl)-
Piperidin-4-Yl]-2-(4-Sulfamoyl-Phenoxy)-Acetamide
pdb|3FKT|A Chain A, Crystal Structure Of Human Beta Secretase Complexed With
Spiropiperdine Iminohydantoin Inhibitor
Length = 405
Score = 87.0 bits (214), Expect = 1e-17, Method: Compositional matrix adjust.
Identities = 73/243 (30%), Positives = 117/243 (48%), Gaps = 21/243 (8%)
Query: 80 YYGEIGIGSPPQSFSVVFDTGSSNLWVPSSKCLFSISCYLHSRYRARLSRTYTKIGVPCK 139
YY E+ +GSPPQ+ +++ DTGSSN V ++ F LH Y+ +LS TY +
Sbjct: 34 YYVEMTVGSPPQTLNILVDTGSSNFAVGAAPHPF-----LHRYYQRQLSSTYRDLRKGVY 88
Query: 140 IHYGSGQISGFFSQDNVKI--GDMIIKDQEFVEVTKEGLLPFLALQFDGILGLGFRDIAA 197
+ Y G +G D V I G + +T+ ++GILGL + +IA
Sbjct: 89 VPYTQGAWAGELGTDLVSIPHGPNVTVRANIAAITESDKFFINGSNWEGILGLAYAEIAR 148
Query: 198 GNAT--PLWYNMVRQGHISQKIFSLW-------LNQ-DPNSEVGGEIIFGGFDWRHFRGS 247
+ + P + ++V+Q H+ +FSL LNQ + + VGG +I GG D + GS
Sbjct: 149 PDDSLEPFFDSLVKQTHVP-NLFSLQLCGAGFPLNQSEVLASVGGSMIIGGIDHSLYTGS 207
Query: 248 HIYVPITEKGYWQIKVGDILIENSSTGF-CEDGC--TAILDSGTSVLAGPTTVVAQINHA 304
Y PI + Y+++ + + I C++ +I+DSGT+ L P V +
Sbjct: 208 LWYTPIRREWYYEVIIVRVEINGQDLKMDCKEYNYDKSIVDSGTTNLRLPKKVFEAAVKS 267
Query: 305 IGA 307
I A
Sbjct: 268 IKA 270
>pdb|3TPR|A Chain A, Crystal Structure Of Bace1 Complexed With An Inhibitor
pdb|3UQR|A Chain A, Crystal Structure Of Bace1 With Its Inhibitor
pdb|3UQR|B Chain B, Crystal Structure Of Bace1 With Its Inhibitor
pdb|3UQR|C Chain C, Crystal Structure Of Bace1 With Its Inhibitor
Length = 433
Score = 87.0 bits (214), Expect = 1e-17, Method: Compositional matrix adjust.
Identities = 73/243 (30%), Positives = 117/243 (48%), Gaps = 21/243 (8%)
Query: 80 YYGEIGIGSPPQSFSVVFDTGSSNLWVPSSKCLFSISCYLHSRYRARLSRTYTKIGVPCK 139
YY E+ +GSPPQ+ +++ DTGSSN V ++ F LH Y+ +LS TY +
Sbjct: 54 YYVEMTVGSPPQTLNILVDTGSSNFAVGAAPHPF-----LHRYYQRQLSSTYRDLRKGVY 108
Query: 140 IHYGSGQISGFFSQDNVKI--GDMIIKDQEFVEVTKEGLLPFLALQFDGILGLGFRDIAA 197
+ Y G+ G D V I G + +T+ ++GILGL + +IA
Sbjct: 109 VPYTQGKWEGELGTDLVSIPHGPNVTVRANIAAITESDKFFINGSNWEGILGLAYAEIAR 168
Query: 198 GNAT--PLWYNMVRQGHISQKIFSLW-------LNQ-DPNSEVGGEIIFGGFDWRHFRGS 247
+ + P + ++V+Q H+ +FSL LNQ + + VGG +I GG D + GS
Sbjct: 169 PDDSLEPFFDSLVKQTHVP-NLFSLQLCGAGFPLNQSEVLASVGGSMIIGGIDHSLYTGS 227
Query: 248 HIYVPITEKGYWQIKVGDILIENSSTGF-CEDGC--TAILDSGTSVLAGPTTVVAQINHA 304
Y PI + Y+++ + + I C++ +I+DSGT+ L P V +
Sbjct: 228 LWYTPIRREWYYEVIIVRVEINGQDLKMDCKEYNYDKSIVDSGTTNLRLPKKVFEAAVKS 287
Query: 305 IGA 307
I A
Sbjct: 288 IKA 290
>pdb|2ZJK|A Chain A, Crystal Structure Of The Human Bace1 Catalytic Domain In
Complex With 4-(4-Fluoro-Benzyl)-Piperazine-2-Carboxylic
Acid(3-Mercapto-Propyl)-Amide
pdb|2ZJK|B Chain B, Crystal Structure Of The Human Bace1 Catalytic Domain In
Complex With 4-(4-Fluoro-Benzyl)-Piperazine-2-Carboxylic
Acid(3-Mercapto-Propyl)-Amide
pdb|2ZJK|C Chain C, Crystal Structure Of The Human Bace1 Catalytic Domain In
Complex With 4-(4-Fluoro-Benzyl)-Piperazine-2-Carboxylic
Acid(3-Mercapto-Propyl)-Amide
Length = 405
Score = 87.0 bits (214), Expect = 1e-17, Method: Compositional matrix adjust.
Identities = 73/243 (30%), Positives = 117/243 (48%), Gaps = 21/243 (8%)
Query: 80 YYGEIGIGSPPQSFSVVFDTGSSNLWVPSSKCLFSISCYLHSRYRARLSRTYTKIGVPCK 139
YY E+ +GSPPQ+ +++ DTGSSN V ++ F LH Y+ +LS TY +
Sbjct: 34 YYVEMTVGSPPQTLNILVDTGSSNFAVGAAPHPF-----LHRYYQRQLSSTYRDLRKGVY 88
Query: 140 IHYGSGQISGFFSQDNVKI--GDMIIKDQEFVEVTKEGLLPFLALQFDGILGLGFRDIAA 197
+ Y G+ G D V I G + +T+ ++GILGL + +IA
Sbjct: 89 VPYCQGKWEGELGTDLVSIPHGPNVTVRANIAAITESDKFFINGSNWEGILGLAYAEIAR 148
Query: 198 GNAT--PLWYNMVRQGHISQKIFSLW-------LNQ-DPNSEVGGEIIFGGFDWRHFRGS 247
+ + P + ++V+Q H+ +FSL LNQ + + VGG +I GG D + GS
Sbjct: 149 PDDSLEPFFDSLVKQTHVP-NLFSLQLCGAGFPLNQSEVLASVGGSMIIGGIDHSLYTGS 207
Query: 248 HIYVPITEKGYWQIKVGDILIENSSTGF-CEDGC--TAILDSGTSVLAGPTTVVAQINHA 304
Y PI + Y+++ + + I C++ +I+DSGT+ L P V +
Sbjct: 208 LWYTPIRREWYYEVIIVRVEINGQDLKMDCKEYNYDKSIVDSGTTNLRLPKKVFEAAVKS 267
Query: 305 IGA 307
I A
Sbjct: 268 IKA 270
>pdb|2HIZ|A Chain A, Crystal Structure Of Human Beta-Secretase (Bace) In The
Presence Of An Inhibitor
pdb|2HIZ|B Chain B, Crystal Structure Of Human Beta-Secretase (Bace) In The
Presence Of An Inhibitor
pdb|2HIZ|C Chain C, Crystal Structure Of Human Beta-Secretase (Bace) In The
Presence Of An Inhibitor
pdb|2P83|A Chain A, Potent And Selective Isophthalamide S2 Hydroxyethylamine
Inhibitor Of Bace1
pdb|2P83|B Chain B, Potent And Selective Isophthalamide S2 Hydroxyethylamine
Inhibitor Of Bace1
pdb|2P83|C Chain C, Potent And Selective Isophthalamide S2 Hydroxyethylamine
Inhibitor Of Bace1
Length = 455
Score = 87.0 bits (214), Expect = 2e-17, Method: Compositional matrix adjust.
Identities = 73/243 (30%), Positives = 117/243 (48%), Gaps = 21/243 (8%)
Query: 80 YYGEIGIGSPPQSFSVVFDTGSSNLWVPSSKCLFSISCYLHSRYRARLSRTYTKIGVPCK 139
YY E+ +GSPPQ+ +++ DTGSSN V ++ F LH Y+ +LS TY +
Sbjct: 77 YYVEMTVGSPPQTLNILVDTGSSNFAVGAAPHPF-----LHRYYQRQLSSTYRDLRKGVY 131
Query: 140 IHYGSGQISGFFSQDNVKI--GDMIIKDQEFVEVTKEGLLPFLALQFDGILGLGFRDIAA 197
+ Y G+ G D V I G + +T+ ++GILGL + +IA
Sbjct: 132 VPYTQGKWEGELGTDLVSIPHGPNVTVRANIAAITESDKFFINGSNWEGILGLAYAEIAR 191
Query: 198 GNAT--PLWYNMVRQGHISQKIFSLW-------LNQ-DPNSEVGGEIIFGGFDWRHFRGS 247
+ + P + ++V+Q H+ +FSL LNQ + + VGG +I GG D + GS
Sbjct: 192 PDDSLEPFFDSLVKQTHVP-NLFSLQLCGAGFPLNQSEVLASVGGSMIIGGIDHSLYTGS 250
Query: 248 HIYVPITEKGYWQIKVGDILIENSSTGF-CEDGC--TAILDSGTSVLAGPTTVVAQINHA 304
Y PI + Y+++ + + I C++ +I+DSGT+ L P V +
Sbjct: 251 LWYTPIRREWYYEVIIVRVEINGQDLKMDCKEYNYDKSIVDSGTTNLRLPKKVFEAAVKS 310
Query: 305 IGA 307
I A
Sbjct: 311 IKA 313
>pdb|3QI1|A Chain A, Design And Synthesis Of Hydroxyethylamine (Hea) Bace-1
Inhibitors: Prime Side Chromane-Containing Inhibitors
Length = 408
Score = 87.0 bits (214), Expect = 2e-17, Method: Compositional matrix adjust.
Identities = 73/243 (30%), Positives = 117/243 (48%), Gaps = 21/243 (8%)
Query: 80 YYGEIGIGSPPQSFSVVFDTGSSNLWVPSSKCLFSISCYLHSRYRARLSRTYTKIGVPCK 139
YY E+ +GSPPQ+ +++ DTGSSN V ++ F LH Y+ +LS TY +
Sbjct: 30 YYVEMTVGSPPQTLNILVDTGSSNFAVGAAPHPF-----LHRYYQRQLSSTYRDLRKGVY 84
Query: 140 IHYGSGQISGFFSQDNVKI--GDMIIKDQEFVEVTKEGLLPFLALQFDGILGLGFRDIAA 197
+ Y G +G D V I G + +T+ ++GILGL + +IA
Sbjct: 85 VPYTQGAWAGELGTDLVSIPHGPNVTVRANIAAITESDKFFINGSNWEGILGLAYAEIAR 144
Query: 198 GNAT--PLWYNMVRQGHISQKIFSLW-------LNQ-DPNSEVGGEIIFGGFDWRHFRGS 247
+ + P + ++V+Q H+ +FSL LNQ + + VGG +I GG D + GS
Sbjct: 145 PDDSLEPFFDSLVKQTHVP-NLFSLQLCGAGFPLNQSEVLASVGGSMIIGGIDHSLYTGS 203
Query: 248 HIYVPITEKGYWQIKVGDILIENSSTGF-CEDGC--TAILDSGTSVLAGPTTVVAQINHA 304
Y PI + Y+++ + + I C++ +I+DSGT+ L P V +
Sbjct: 204 LWYTPIRREWYYEVIIVRVEINGQDLKMDCKEYNYDKSIVDSGTTNLRLPKKVFEAAVKS 263
Query: 305 IGA 307
I A
Sbjct: 264 IKA 266
>pdb|2VA5|A Chain A, X-Ray Crystal Structure Of Beta Secretase Complexed With
Compound 8c
pdb|2VA6|A Chain A, X-Ray Crystal Structure Of Beta Secretase Complexed With
Compound 24
pdb|2VA7|A Chain A, X-Ray Crystal Structure Of Beta Secretase Complexed With
Compound 27
Length = 455
Score = 87.0 bits (214), Expect = 2e-17, Method: Compositional matrix adjust.
Identities = 73/243 (30%), Positives = 117/243 (48%), Gaps = 21/243 (8%)
Query: 80 YYGEIGIGSPPQSFSVVFDTGSSNLWVPSSKCLFSISCYLHSRYRARLSRTYTKIGVPCK 139
YY E+ +GSPPQ+ +++ DTGSSN V ++ F LH Y+ +LS TY +
Sbjct: 77 YYVEMTVGSPPQTLNILVDTGSSNFAVGAAPHPF-----LHRYYQRQLSSTYRDLRKGVY 131
Query: 140 IHYGSGQISGFFSQDNVKI--GDMIIKDQEFVEVTKEGLLPFLALQFDGILGLGFRDIAA 197
+ Y G+ G D V I G + +T+ ++GILGL + +IA
Sbjct: 132 VPYTQGKWEGELGTDLVSIPHGPNVTVRANIAAITESDKFFINGSNWEGILGLAYAEIAR 191
Query: 198 GNAT--PLWYNMVRQGHISQKIFSLW-------LNQ-DPNSEVGGEIIFGGFDWRHFRGS 247
+ + P + ++V+Q H+ +FSL LNQ + + VGG +I GG D + GS
Sbjct: 192 PDDSLEPFFDSLVKQTHVP-NLFSLQLCGAGFPLNQSEVLASVGGSMIIGGIDHSLYTGS 250
Query: 248 HIYVPITEKGYWQIKVGDILIENSSTGF-CEDGC--TAILDSGTSVLAGPTTVVAQINHA 304
Y PI + Y+++ + + I C++ +I+DSGT+ L P V +
Sbjct: 251 LWYTPIRREWYYEVIIVRVEINGQDLKMDCKEYNYDKSIVDSGTTNLRLPKKVFEAAVKS 310
Query: 305 IGA 307
I A
Sbjct: 311 IKA 313
>pdb|3LPI|A Chain A, Structure Of Bace Bound To Sch745132
pdb|3LPI|B Chain B, Structure Of Bace Bound To Sch745132
pdb|3LPJ|A Chain A, Structure Of Bace Bound To Sch743641
pdb|3LPJ|B Chain B, Structure Of Bace Bound To Sch743641
pdb|3LPK|A Chain A, Structure Of Bace Bound To Sch747123
pdb|3LPK|B Chain B, Structure Of Bace Bound To Sch747123
pdb|3OHF|A Chain A, Crystal Structure Of Beta-Site App-Cleaving Enzyme 1
(Bace-Wt) Complex With Bms-655295 Aka N~3~-((1s,2r)-1-
Benzyl-2-Hydroxy-3-((3-
Methoxybenzyl)amino)propyl)-N~1~,
N~1~-Dibutyl-1h-Indole-1,3- Dicarboxamide
pdb|3OHF|B Chain B, Crystal Structure Of Beta-Site App-Cleaving Enzyme 1
(Bace-Wt) Complex With Bms-655295 Aka N~3~-((1s,2r)-1-
Benzyl-2-Hydroxy-3-((3-
Methoxybenzyl)amino)propyl)-N~1~,
N~1~-Dibutyl-1h-Indole-1,3- Dicarboxamide
pdb|3OHH|A Chain A, Crystal Structure Of Beta-Site App-Cleaving Enzyme 1
(Bace-Wt) Complex With Bms-681889 Aka
N~1~-Butyl-5-Cyano- N~3~-((1s,2r)-1-(3,5-
Difluorobenzyl)-2-Hydroxy-3-((3-
Methoxybenzyl)amino)propyl)-N~1~- Methyl-1h-Indole-1,3-
Dicarboxamide
pdb|3OHH|B Chain B, Crystal Structure Of Beta-Site App-Cleaving Enzyme 1
(Bace-Wt) Complex With Bms-681889 Aka
N~1~-Butyl-5-Cyano- N~3~-((1s,2r)-1-(3,5-
Difluorobenzyl)-2-Hydroxy-3-((3-
Methoxybenzyl)amino)propyl)-N~1~- Methyl-1h-Indole-1,3-
Dicarboxamide
pdb|3R2F|A Chain A, Crystal Structure Of Beta-Site App-Cleaving Enzyme 1
(Bace-Wt) Complex With Bms-693391 Aka
(2s)-2-((3r)-3-Acetamido-3-Isobutyl-2-Oxo-1-
Pyrrolidinyl)-N-((1s,2r)-1-(3,
5-Difluorobenzyl)-2-Hydroxy-2-((2r,4r)-
4-Propoxy-2-Pyrrolidinyl)ethyl)-4-Phenylbutanamide
pdb|3R2F|B Chain B, Crystal Structure Of Beta-Site App-Cleaving Enzyme 1
(Bace-Wt) Complex With Bms-693391 Aka
(2s)-2-((3r)-3-Acetamido-3-Isobutyl-2-Oxo-1-
Pyrrolidinyl)-N-((1s,2r)-1-(3,
5-Difluorobenzyl)-2-Hydroxy-2-((2r,4r)-
4-Propoxy-2-Pyrrolidinyl)ethyl)-4-Phenylbutanamide
pdb|3R2F|D Chain D, Crystal Structure Of Beta-Site App-Cleaving Enzyme 1
(Bace-Wt) Complex With Bms-693391 Aka
(2s)-2-((3r)-3-Acetamido-3-Isobutyl-2-Oxo-1-
Pyrrolidinyl)-N-((1s,2r)-1-(3,
5-Difluorobenzyl)-2-Hydroxy-2-((2r,4r)-
4-Propoxy-2-Pyrrolidinyl)ethyl)-4-Phenylbutanamide
pdb|3R2F|E Chain E, Crystal Structure Of Beta-Site App-Cleaving Enzyme 1
(Bace-Wt) Complex With Bms-693391 Aka
(2s)-2-((3r)-3-Acetamido-3-Isobutyl-2-Oxo-1-
Pyrrolidinyl)-N-((1s,2r)-1-(3,
5-Difluorobenzyl)-2-Hydroxy-2-((2r,4r)-
4-Propoxy-2-Pyrrolidinyl)ethyl)-4-Phenylbutanamide
pdb|3SKF|A Chain A, Crystal Structure Of Beta-Site App-Cleaving Enzyme 1
(Bace-Wt) Complex With
(2s)-2-((3s)-3-(Acetylamino)-3-(Butan-2-Yl)-2-
Oxopyrrolidin-1-
Yl)-N-((2s,
3r)-3-Hydroxy-4-((3-Methoxybenzyl)amino)-1-Phenylbutan-
2- Yl)-4-Phenylbutanamide
pdb|3SKF|B Chain B, Crystal Structure Of Beta-Site App-Cleaving Enzyme 1
(Bace-Wt) Complex With
(2s)-2-((3s)-3-(Acetylamino)-3-(Butan-2-Yl)-2-
Oxopyrrolidin-1-
Yl)-N-((2s,
3r)-3-Hydroxy-4-((3-Methoxybenzyl)amino)-1-Phenylbutan-
2- Yl)-4-Phenylbutanamide
pdb|3SKG|A Chain A, Crystal Structure Of Beta-Site App-Cleaving Enzyme 1
(Bace-Wt) Complex With
(2s)-2-((3r)-3-Acetamido-3-Isobutyl-2-Oxo-1-
Pyrrolidinyl)-N-
((1s,2r)-1-(3,5-Difluorobenzyl)-2-Hydroxy-2-(1,2,3,
4-Tetrahydro-3- Isoquinolinyl)ethyl)-4-Phenylbutanamide
pdb|3SKG|B Chain B, Crystal Structure Of Beta-Site App-Cleaving Enzyme 1
(Bace-Wt) Complex With
(2s)-2-((3r)-3-Acetamido-3-Isobutyl-2-Oxo-1-
Pyrrolidinyl)-N-
((1s,2r)-1-(3,5-Difluorobenzyl)-2-Hydroxy-2-(1,2,3,
4-Tetrahydro-3- Isoquinolinyl)ethyl)-4-Phenylbutanamide
pdb|3SKG|D Chain D, Crystal Structure Of Beta-Site App-Cleaving Enzyme 1
(Bace-Wt) Complex With
(2s)-2-((3r)-3-Acetamido-3-Isobutyl-2-Oxo-1-
Pyrrolidinyl)-N-
((1s,2r)-1-(3,5-Difluorobenzyl)-2-Hydroxy-2-(1,2,3,
4-Tetrahydro-3- Isoquinolinyl)ethyl)-4-Phenylbutanamide
pdb|3SKG|E Chain E, Crystal Structure Of Beta-Site App-Cleaving Enzyme 1
(Bace-Wt) Complex With
(2s)-2-((3r)-3-Acetamido-3-Isobutyl-2-Oxo-1-
Pyrrolidinyl)-N-
((1s,2r)-1-(3,5-Difluorobenzyl)-2-Hydroxy-2-(1,2,3,
4-Tetrahydro-3- Isoquinolinyl)ethyl)-4-Phenylbutanamide
pdb|4FSE|A Chain A, Crystal Structure Of Beta-Site App-Cleaving Enzyme 1
(Bace-Wt) Complex With N-(N-(4-Amino-3,5-
Dichlorobenzyl)carbamimidoyl)-3-(4- Methoxyphenyl)-5-
Methyl-4-Isothiazolecarboxamide
pdb|4FSE|B Chain B, Crystal Structure Of Beta-Site App-Cleaving Enzyme 1
(Bace-Wt) Complex With N-(N-(4-Amino-3,5-
Dichlorobenzyl)carbamimidoyl)-3-(4- Methoxyphenyl)-5-
Methyl-4-Isothiazolecarboxamide
pdb|4FSE|D Chain D, Crystal Structure Of Beta-Site App-Cleaving Enzyme 1
(Bace-Wt) Complex With N-(N-(4-Amino-3,5-
Dichlorobenzyl)carbamimidoyl)-3-(4- Methoxyphenyl)-5-
Methyl-4-Isothiazolecarboxamide
pdb|4FSE|E Chain E, Crystal Structure Of Beta-Site App-Cleaving Enzyme 1
(Bace-Wt) Complex With N-(N-(4-Amino-3,5-
Dichlorobenzyl)carbamimidoyl)-3-(4- Methoxyphenyl)-5-
Methyl-4-Isothiazolecarboxamide
Length = 455
Score = 86.7 bits (213), Expect = 2e-17, Method: Compositional matrix adjust.
Identities = 73/243 (30%), Positives = 117/243 (48%), Gaps = 21/243 (8%)
Query: 80 YYGEIGIGSPPQSFSVVFDTGSSNLWVPSSKCLFSISCYLHSRYRARLSRTYTKIGVPCK 139
YY E+ +GSPPQ+ +++ DTGSSN V ++ F LH Y+ +LS TY +
Sbjct: 76 YYVEMTVGSPPQTLNILVDTGSSNFAVGAAPHPF-----LHRYYQRQLSSTYRDLRKGVY 130
Query: 140 IHYGSGQISGFFSQDNVKI--GDMIIKDQEFVEVTKEGLLPFLALQFDGILGLGFRDIAA 197
+ Y G+ G D V I G + +T+ ++GILGL + +IA
Sbjct: 131 VPYTQGKWEGELGTDLVSIPHGPNVTVRANIAAITESDKFFINGSNWEGILGLAYAEIAR 190
Query: 198 GNAT--PLWYNMVRQGHISQKIFSLW-------LNQ-DPNSEVGGEIIFGGFDWRHFRGS 247
+ + P + ++V+Q H+ +FSL LNQ + + VGG +I GG D + GS
Sbjct: 191 PDDSLEPFFDSLVKQTHVP-NLFSLQLCGAGFPLNQSEVLASVGGSMIIGGIDHSLYTGS 249
Query: 248 HIYVPITEKGYWQIKVGDILIENSSTGF-CEDGC--TAILDSGTSVLAGPTTVVAQINHA 304
Y PI + Y+++ + + I C++ +I+DSGT+ L P V +
Sbjct: 250 LWYTPIRREWYYEVIIVRVEINGQDLKMDCKEYNYDKSIVDSGTTNLRLPKKVFEAAVKS 309
Query: 305 IGA 307
I A
Sbjct: 310 IKA 312
>pdb|3TPJ|A Chain A, Apo Structure Of Bace1
pdb|3TPL|A Chain A, Apo Structure Of Bace1
pdb|3TPL|B Chain B, Apo Structure Of Bace1
pdb|3TPL|C Chain C, Apo Structure Of Bace1
pdb|3TPP|A Chain A, Crystal Structure Of Bace1 Complexed With An Inhibitor
pdb|3UQP|A Chain A, Crystal Structure Of Bace1 With Its Inhibitor
pdb|3UQU|A Chain A, Crystal Structure Of Bace1 With Its Inhibitor
pdb|3UQW|A Chain A, Crystal Structure Of Bace1 With Its Inhibitor
pdb|3UQX|A Chain A, Crystal Structure Of Bace1 With Its Inhibitor
pdb|4DV9|A Chain A, Crystal Structure Of Bace1 With Its Inhibitor
pdb|4DVF|A Chain A, Crystal Structure Of Bace1 With Its Inhibitor
pdb|4DVF|B Chain B, Crystal Structure Of Bace1 With Its Inhibitor
pdb|4FGX|A Chain A, Crystal Structure Of Bace1 With Novel Inhibitor
Length = 433
Score = 86.7 bits (213), Expect = 2e-17, Method: Compositional matrix adjust.
Identities = 73/243 (30%), Positives = 117/243 (48%), Gaps = 21/243 (8%)
Query: 80 YYGEIGIGSPPQSFSVVFDTGSSNLWVPSSKCLFSISCYLHSRYRARLSRTYTKIGVPCK 139
YY E+ +GSPPQ+ +++ DTGSSN V ++ F LH Y+ +LS TY +
Sbjct: 54 YYVEMTVGSPPQTLNILVDTGSSNFAVGAAPHPF-----LHRYYQRQLSSTYRDLRKGVY 108
Query: 140 IHYGSGQISGFFSQDNVKI--GDMIIKDQEFVEVTKEGLLPFLALQFDGILGLGFRDIAA 197
+ Y G +G D V I G + +T+ ++GILGL + +IA
Sbjct: 109 VPYTQGAWAGELGTDLVSIPHGPNVTVRANIAAITESDKFFINGSNWEGILGLAYAEIAR 168
Query: 198 GNAT--PLWYNMVRQGHISQKIFSLW-------LNQ-DPNSEVGGEIIFGGFDWRHFRGS 247
+ + P + ++V+Q H+ +FSL LNQ + + VGG +I GG D + GS
Sbjct: 169 PDDSLEPFFDSLVKQTHVP-NLFSLQLCGAGFPLNQSEVLASVGGSMIIGGIDHSLYTGS 227
Query: 248 HIYVPITEKGYWQIKVGDILIENSSTGF-CEDGC--TAILDSGTSVLAGPTTVVAQINHA 304
Y PI + Y+++ + + I C++ +I+DSGT+ L P V +
Sbjct: 228 LWYTPIRREWYYEVIIVRVEINGQDLKMDCKEYNYDKSIVDSGTTNLRLPKKVFEAAVKS 287
Query: 305 IGA 307
I A
Sbjct: 288 IKA 290
>pdb|1MPP|A Chain A, X-Ray Analyses Of Aspartic Proteinases. V. Structure And
Refinement At 2.0 Angstroms Resolution Of The Aspartic
Proteinase From Mucor Pusillus
Length = 361
Score = 84.7 bits (208), Expect = 7e-17, Method: Compositional matrix adjust.
Identities = 72/264 (27%), Positives = 114/264 (43%), Gaps = 36/264 (13%)
Query: 79 QYYGEIGIGSPPQSFSVVFDTGSSNLWVPSSKCLFSISCYLHSRYRARLSRTYTKIGVPC 138
+Y + IG+P Q F ++FDTGSS+ WVP C S C + S T+ +
Sbjct: 19 EYAIPVSIGTPGQDFYLLFDTGSSDTWVPHKGCDNSEGCVGKRFFDPSSSSTFKETDYNL 78
Query: 139 KIHYGSGQISGFFSQDNVKIGDMIIKDQEFVEV------TKEGLLPFLALQFDGILGLGF 192
I YG+G +G + +D++ +G +K Q V T E P L DGI G +
Sbjct: 79 NITYGTGGANGIYFRDSITVGGATVKQQTLAYVDNVSGPTAE-QSPDSELFLDGIFGAAY 137
Query: 193 RDIAAGNA------TPLWYNMVRQGHISQKIFSLWLNQDP-----------NSEVGGEII 235
D A A + N+ +QG IS +FS+++N + N+ +GG+I
Sbjct: 138 PDNTAMEAEYGDTYNTVHVNLYKQGLISSPVFSVYMNTNDGGGQVVFGGVNNTLLGGDIQ 197
Query: 236 FGGFDWRHFRGSHIYVPITEKGYWQIKVGDILIENSSTGFCEDGCTAI-LDSGTSVLAGP 294
+ D RG + +W V + I+ S DG A +D+GT+ P
Sbjct: 198 YT--DVLKSRGGYF--------FWDAPVTGVKIDGSD-AVSFDGAQAFTIDTGTNFFIAP 246
Query: 295 TTVVAQINHAIGAEGIVSMQCKTV 318
++ ++ A + S Q TV
Sbjct: 247 SSFAEKVVKAALPDATESQQGYTV 270
>pdb|2ZJJ|A Chain A, Crystal Structure Of The Human Bace1 Catalytic Domain In
Complex With 4-(4-Fluoro-Benzyl)-Piperazine-2-Carboxylic
Acid (2-Mercapto-Ethyl)- Amide
Length = 405
Score = 84.7 bits (208), Expect = 7e-17, Method: Compositional matrix adjust.
Identities = 72/243 (29%), Positives = 116/243 (47%), Gaps = 21/243 (8%)
Query: 80 YYGEIGIGSPPQSFSVVFDTGSSNLWVPSSKCLFSISCYLHSRYRARLSRTYTKIGVPCK 139
YY E+ +GSPPQ+ +++ DTGSSN V ++ F LH Y+ +LS TY +
Sbjct: 34 YYVEMTVGSPPQTLNILVDTGSSNFAVGAAPHPF-----LHRYYQRQLSSTYRDLRKGVY 88
Query: 140 IHYGSGQISGFFSQDNVKI--GDMIIKDQEFVEVTKEGLLPFLALQFDGILGLGFRDIAA 197
+ Y G +G D V I G + +T+ ++GILGL + +IA
Sbjct: 89 VPYTQGAWAGELGTDLVSIPHGPNVTVRANIAAITESDKFFINGSNWEGILGLAYAEIAR 148
Query: 198 GNAT--PLWYNMVRQGHISQKIFSLW-------LNQ-DPNSEVGGEIIFGGFDWRHFRGS 247
+ + P + ++V+Q H+ +FSL LNQ + + VGG +I GG D + GS
Sbjct: 149 PDDSLEPFFDSLVKQTHVP-NLFSLQLCGAGFPLNQSEVLASVGGSMIIGGIDHSLYTGS 207
Query: 248 HIYVPITEKGYWQIKVGDILIENSSTGF-CEDGC--TAILDSGTSVLAGPTTVVAQINHA 304
Y PI + Y+++ + + I C++ +I+DSG + L P V +
Sbjct: 208 LWYTPIRREWYYEVIIVRVEINGQDLKMDCKEYNYDKSIVDSGCTNLRLPKKVFEAAVKS 267
Query: 305 IGA 307
I A
Sbjct: 268 IKA 270
>pdb|2EWY|A Chain A, Crystal Structure Of Human Bace2 In Complex With A
Hydroxyethylenamine Transition-State Inhibitor
pdb|2EWY|B Chain B, Crystal Structure Of Human Bace2 In Complex With A
Hydroxyethylenamine Transition-State Inhibitor
pdb|2EWY|C Chain C, Crystal Structure Of Human Bace2 In Complex With A
Hydroxyethylenamine Transition-State Inhibitor
pdb|2EWY|D Chain D, Crystal Structure Of Human Bace2 In Complex With A
Hydroxyethylenamine Transition-State Inhibitor
Length = 383
Score = 80.5 bits (197), Expect = 1e-15, Method: Compositional matrix adjust.
Identities = 67/247 (27%), Positives = 116/247 (46%), Gaps = 24/247 (9%)
Query: 80 YYGEIGIGSPPQSFSVVFDTGSSNLWVPSSKCLFSISCYLHSRYRARLSRTYTKIGVPCK 139
YY E+ IG+PPQ ++ DTGSSN V + Y+ + + S TY G
Sbjct: 15 YYLEMLIGTPPQKLQILVDTGSSNFAVAGTP-----HSYIDTYFDTERSSTYRSKGFDVT 69
Query: 140 IHYGSGQISGFFSQDNVKI-----GDMIIKDQEFVEVTKEGLLPFLALQFDGILGLGFRD 194
+ Y G +GF +D V I ++ E ++ LP ++++GILGL +
Sbjct: 70 VKYTQGSWTGFVGEDLVTIPKGFNTSFLVNIATIFE-SENFFLP--GIKWNGILGLAYAT 126
Query: 195 IAAGNAT--PLWYNMVRQGHISQKIFSLW-----LNQDPNSEVGGEIIFGGFDWRHFRGS 247
+A +++ + ++V Q +I +FS+ L + GG ++ GG + ++G
Sbjct: 127 LAKPSSSLETFFDSLVTQANIP-NVFSMQMCGAGLPVAGSGTNGGSLVLGGIEPSLYKGD 185
Query: 248 HIYVPITEKGYWQIKVGDILIENSSTGF-CED--GCTAILDSGTSVLAGPTTVVAQINHA 304
Y PI E+ Y+QI++ + I S C + AI+DSGT++L P V + A
Sbjct: 186 IWYTPIKEEWYYQIEILKLEIGGQSLNLDCREYNADKAIVDSGTTLLRLPQKVFDAVVEA 245
Query: 305 IGAEGIV 311
+ ++
Sbjct: 246 VARASLI 252
>pdb|1WKR|A Chain A, Crystal Structure Of Aspartic Proteinase From Irpex
Lacteus
Length = 340
Score = 80.1 bits (196), Expect = 2e-15, Method: Compositional matrix adjust.
Identities = 67/242 (27%), Positives = 100/242 (41%), Gaps = 33/242 (13%)
Query: 79 QYYGEIGIGSPPQSFSVVFDTGSSNLWVPSSKCLFSISCYLHSRYRARLSRTYTKIGVPC 138
Y +G+GSP ++S++ DTGSSN W+ + K S S T K+
Sbjct: 13 DYVVNVGVGSPATTYSLLVDTGSSNTWLGADKSYVKTSTS---------SATSDKV---- 59
Query: 139 KIHYGSGQISGFFSQDNVKIGDMIIKDQEFVEVTKEGLLPFLALQFDGILGLGFRDIAAG 198
+ YGSG SG D V +G + I Q +++ + DGILG+G D+ G
Sbjct: 60 SVTYGSGSFSGTEYTDTVTLGSLTIPKQSIGVASRDSGFDGV----DGILGVGPVDLTVG 115
Query: 199 NATP--------LWYNMVRQGHISQKIFSLWLN-QDPNSEVGGEIIFGGFDWRHFRGSHI 249
+P + N+ QG I + ++ S GE+ FG D + GS
Sbjct: 116 TLSPHTSTSIPTVTDNLFSQGTIPTNLLAVSFEPTTSESSTNGELTFGATDSSKYTGSIT 175
Query: 250 YVPITE----KGYWQIKVGDILIENSSTGFCEDGCTAILDSGTSVLAGPTTVVAQINHAI 305
Y PIT YW I I S+ I+D+GT++ + A+ A
Sbjct: 176 YTPITSTSPASAYWGINQS---IRYGSSTSILSSTAGIVDTGTTLTLIASDAFAKYKKAT 232
Query: 306 GA 307
GA
Sbjct: 233 GA 234
>pdb|3LIZ|A Chain A, Crystal Structure Of Bla G 2 Complexed With Fab 4c3
Length = 334
Score = 79.0 bits (193), Expect = 4e-15, Method: Compositional matrix adjust.
Identities = 63/239 (26%), Positives = 111/239 (46%), Gaps = 19/239 (7%)
Query: 75 YLDAQYYGEIGIGSPPQSFSVVFDTGSSNLWVPSSKCLFSISCYLHSRYRARLSRTYTKI 134
+++ QY G IG+ Q+F VFD+ S N+ V S +C+ + + +L Y
Sbjct: 16 FINTQYAGITKIGN--QNFLTVFDSTSCNVVVASQECVGGACVCPNLQKYEKLKPKYISD 73
Query: 135 GVPCKIHYGSGQISGFFSQDNVKIGDMIIKDQEFV---EVTKEGLLPFLALQFDGILGLG 191
G + +G G +D++ I + Q+ V E+++E + L D ++G+
Sbjct: 74 GNVQVKFFDTGSAVGRGIEDSLTISQLTTSQQDIVLADELSQEVCI----LSADVVVGIA 129
Query: 192 FRDIAAGNATPLWYNMVRQGHISQK----IFSLWLNQDPNSEVGGEIIFGGFDWRHFRGS 247
A G L V + + + +FS+ + + E GEIIFGG DW++ G
Sbjct: 130 ----APGCPNALKGKTVLENFVEENLIAPVFSIHHARFQDGEHFGEIIFGGSDWKYVDGE 185
Query: 248 HIYVPITEKGYWQIKVGDILIENSSTGFCEDGCTAILDSGTSVLAGPTTVVAQINHAIG 306
YVP+ W+ ++ + I +++ G AI+D+ +++ GP V IN AIG
Sbjct: 186 FTYVPLVGDDSWKFRLDGVKIGDTTVA--PAGTQAIIDTSKAIIVGPKAYVNPINEAIG 242
>pdb|1YG9|A Chain A, The Structure Of Mutant (N93q) Of Bla G 2
pdb|2NR6|A Chain A, Crystal Structure Of The Complex Of Antibody And The
Allergen Bla G 2
pdb|2NR6|B Chain B, Crystal Structure Of The Complex Of Antibody And The
Allergen Bla G 2
Length = 330
Score = 78.6 bits (192), Expect = 5e-15, Method: Compositional matrix adjust.
Identities = 63/239 (26%), Positives = 111/239 (46%), Gaps = 19/239 (7%)
Query: 75 YLDAQYYGEIGIGSPPQSFSVVFDTGSSNLWVPSSKCLFSISCYLHSRYRARLSRTYTKI 134
+++ QY G IG+ Q+F VFD+ S N+ V S +C+ + + +L Y
Sbjct: 14 FINTQYAGITKIGN--QNFLTVFDSTSCNVVVASQECVGGACVCPNLQKYEKLKPKYISD 71
Query: 135 GVPCKIHYGSGQISGFFSQDNVKIGDMIIKDQEFV---EVTKEGLLPFLALQFDGILGLG 191
G + +G G +D++ I + Q+ V E+++E + L D ++G+
Sbjct: 72 GNVQVKFFDTGSAVGRGIEDSLTISQLTTSQQDIVLADELSQEVCI----LSADVVVGIA 127
Query: 192 FRDIAAGNATPLWYNMVRQGHISQK----IFSLWLNQDPNSEVGGEIIFGGFDWRHFRGS 247
A G L V + + + +FS+ + + E GEIIFGG DW++ G
Sbjct: 128 ----APGCPNALKGKTVLENFVEENLIAPVFSIHHARFQDGEHFGEIIFGGSDWKYVDGE 183
Query: 248 HIYVPITEKGYWQIKVGDILIENSSTGFCEDGCTAILDSGTSVLAGPTTVVAQINHAIG 306
YVP+ W+ ++ + I +++ G AI+D+ +++ GP V IN AIG
Sbjct: 184 FTYVPLVGDDSWKFRLDGVKIGDTTVA--PAGTQAIIDTSKAIIVGPKAYVNPINEAIG 240
>pdb|4B1C|A Chain A, New Aminoimidazoles As Bace-1 Inhibitors: From Rational
Design To Ab-Lowering In Brain
Length = 375
Score = 72.8 bits (177), Expect = 3e-13, Method: Compositional matrix adjust.
Identities = 67/235 (28%), Positives = 110/235 (46%), Gaps = 19/235 (8%)
Query: 80 YYGEIGIGSPPQSFSVVFDTGSSNLWVPSSKCLFSISCYLHSRYRARLSRTYTKIGVPCK 139
YY E+ +GSPPQ+ +++ DTGSSN V ++ F LH Y+ +LS TY +
Sbjct: 20 YYVEMTVGSPPQTLNILVDTGSSNFAVGAAPHPF-----LHRYYQRQLSSTYRDLRKGVY 74
Query: 140 IHYGSGQISGFFSQDNVKI--GDMIIKDQEFVEVTKEGLLPFLALQFDGILGLGFRDIAA 197
+ Y G+ G D V I G + +T+ ++GILGL + +IA
Sbjct: 75 VPYTQGKWEGELGTDLVSIPHGPNVTVRANIAAITESDKFFINGSNWEGILGLAYAEIAR 134
Query: 198 GNAT--PLWYNMVRQGHISQKIFSLWLNQDPNSEVGGEIIFGGFDWRHFRGSHIYVPITE 255
+ + P + ++V+Q H+ +FSL L + +GG D + GS Y PI
Sbjct: 135 PDDSLEPFFDSLVKQTHVPN-LFSLQLCGGGSMIIGGI------DHSLYTGSLWYTPIRR 187
Query: 256 KGYWQIKVGDILIENSSTGF-CEDGC--TAILDSGTSVLAGPTTVVAQINHAIGA 307
+ Y+++ + + I C++ +I+DSGT+ L P V +I A
Sbjct: 188 EWYYEVIIVRVEINGQDLKMDCKEYNYDKSIVDSGTTNLRLPKKVFEAAVKSIKA 242
>pdb|3OAD|B Chain B, Design And Optimization Of New Piperidines As Renin
Inhibitors
pdb|3OAD|D Chain D, Design And Optimization Of New Piperidines As Renin
Inhibitors
pdb|3OAG|B Chain B, Design And Optimization Of New Piperidines As Renin
Inhibitors
pdb|3OAG|D Chain D, Design And Optimization Of New Piperidines As Renin
Inhibitors
pdb|3O9L|B Chain B, Design And Optimisation Of New Piperidines As Renin
Inhibitors
pdb|3O9L|D Chain D, Design And Optimisation Of New Piperidines As Renin
Inhibitors
Length = 176
Score = 68.6 bits (166), Expect = 6e-12, Method: Compositional matrix adjust.
Identities = 30/79 (37%), Positives = 54/79 (68%), Gaps = 1/79 (1%)
Query: 230 VGGEIIFGGFDWRHFRGSHIYVPITEKGYWQIKVGDILIENSSTGFCEDGCTAILDSGTS 289
+GG+I+ GG D +H+ G+ Y+ + + G WQI++ + + SST CEDGC A++D+G S
Sbjct: 2 LGGQIVLGGSDPQHYEGNFHYINLIKTGVWQIQMKGVSV-GSSTLLCEDGCLALVDTGAS 60
Query: 290 VLAGPTTVVAQINHAIGAE 308
++G T+ + ++ A+GA+
Sbjct: 61 YISGSTSSIEKLMEALGAK 79
>pdb|3RFI|A Chain A, Crystal Structure Of The Saposin-Like Domain Of Plant
Aspartic Protease From Solanum Tuberosum
Length = 108
Score = 65.9 bits (159), Expect = 3e-11, Method: Composition-based stats.
Identities = 26/48 (54%), Positives = 37/48 (77%)
Query: 307 AEGIVSMQCKTVVFEYGNMIWEFLISGVQPETVCSDIGLCVYNGSSYM 354
A IVSM+CKT+V +YG MIW+ L+SGV+P+ VCS GLC +G+ ++
Sbjct: 3 AMAIVSMECKTIVSQYGEMIWDLLVSGVRPDQVCSQAGLCFVDGAQHV 50
>pdb|1PPL|E Chain E, Crystallographic Analysis Of Transition-State Mimics Bound
To Penicillopepsin: Phosphorus-Containing Peptide
Analogues
pdb|1PPM|E Chain E, Crystallographic Analysis Of Transition-state Mimics Bound
To Penicillopepsin: Phosphorus-containing Peptide
Analogues
pdb|1APT|E Chain E, Crystallographic Analysis Of A Pepstatin Analogue Binding
To The Aspartyl Proteinase Penicillopepsin At 1.8
Angstroms Resolution
pdb|1APU|E Chain E, Crystallographic Analysis Of A Pepstatin Analogue Binding
To The Aspartyl Proteinase Penicillopepsin At 1.8
Angstroms Resolution
pdb|1APV|E Chain E, Crystallographic Analysis Of Transition State Mimics Bound
To Penicillopepsin: Difluorostatine-And
Difluorostatone-Containing Peptides
pdb|1APW|E Chain E, Crystallographic Analysis Of Transition State Mimics Bound
To Penicillopepsin: Difluorostatine-And
Difluorostatone-Containing Peptides
pdb|1PPK|E Chain E, Crystallographic Analysis Of Transition State Mimics Bound
To Penicillopepsin: Phosphorous-Containing Peptide
Analogues
pdb|1BXO|A Chain A, Acid Proteinase (Penicillopepsin) (E.C.3.4.23.20) Complex
With Phosphonate Inhibitor: Methyl
Cyclo[(2s)-2-[[(1r)-1-(N-(L-N-(3-
Methylbutanoyl)valyl-L-Aspartyl)amino)-3-Methylbut Yl]
Hydroxyphosphinyloxy]-3-(3-Aminomethyl) Phenylpropanoate
pdb|1BXQ|A Chain A, Acid Proteinase (Penicillopepsin) Complex With Phosphonate
Inhibitor.
pdb|2WEA|A Chain A, Acid Proteinase (Penicillopepsin) (E.C.3.4.23.20) Complex
With Phosphonate Inhibitor:
Methyl[cyclo-7[(2r)-((N-Valyl)
Amino)-2-(Hydroxyl-(1s)-1-Methyoxycarbonyl-2-
Phenylethoxy)
Phosphinyloxy-Ethyl]-1-Naphthaleneacetamide], Sodium
Salt
pdb|2WEB|A Chain A, Acid Proteinase (penicillopepsin) (e.c.3.4.23.20) Complex
With Phosphonate Inhibitor:
Methyl(2s)-[1-(((n-formyl)-l-
Valyl)amino-2-(2-naphthyl)ethyl)hydroxyphosphinyloxy]-3-
Phenylpropanoate, Sodium Salt
pdb|2WEC|A Chain A, Acid Proteinase (Penicillopepsin) (E.C.3.4.23.20) Complex
With Phosphonate Inhibitor: Methyl(2s)-[1-(((N-(1-
Naphthaleneacetyl))-L-Valyl)aminomethyl)hydroxy
Phosphinyloxy]-3-Phenylpropanoate, Sodium Salt
pdb|2WED|A Chain A, Acid Proteinase (penicillopepsin) (e.c.3.4.23.20) Complex
With Phosphonate Macrocyclic
Inhibitor:methyl[cyclo-7[(2r)-
((n-valyl)amino)-2-(hydroxyl-(1s)-1-methyoxycarbonyl-2-
Phenylethoxy)phosphinyloxy-ethyl]-1-
naphthaleneacetamide], Sodium Salt
pdb|3APP|A Chain A, Structure And Refinement Of Penicillopepsin At 1.8
Angstroms Resolution
Length = 323
Score = 53.9 bits (128), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 67/235 (28%), Positives = 108/235 (45%), Gaps = 31/235 (13%)
Query: 77 DAQYYGEIGIGSPPQSFSVVFDTGSSNLWVPSSKCLFSISCYLHSRYRARLSRTYTKIGV 136
D +Y + IG + ++ FDTGS++LWV S++ S HS Y + G
Sbjct: 14 DEEYITPVTIGG--TTLNLNFDTGSADLWVFSTELPASQQS-GHSVYNPSATGKELS-GY 69
Query: 137 PCKIHYGSG-QISGFFSQDNVKIGDMIIKDQEFVEVTKEGLLPFLALQF------DGILG 189
I YG G SG D+V +G + Q V+ ++ ++ QF DG+LG
Sbjct: 70 TWSISYGDGSSASGNVFTDSVTVGGVTAHGQA-VQAAQQ-----ISAQFQQDTNNDGLLG 123
Query: 190 LGFRDIAA--GNATPLWYNMVRQGHISQKIFSLWL-NQDPNSEVGGEIIFGGFDWRHFRG 246
L F I + +++ V+ ++Q +F++ L +Q P G FG D + G
Sbjct: 124 LAFSSINTVQPQSQTTFFDTVKS-SLAQPLFAVALKHQQP-----GVYDFGFIDSSKYTG 177
Query: 247 SHIYVPI-TEKGYWQIKVGDILIENSSTGFCEDGCTAILDSGTSVLAGPTTVVAQ 300
S Y + +G+W V D S +G DG + I D+GT++L +VV+Q
Sbjct: 178 SLTYTGVDNSQGFWSFNV-DSYTAGSQSG---DGFSGIADTGTTLLLLDDSVVSQ 228
>pdb|1GKT|A Chain A, Neutron Laue Diffraction Structure Of Endothiapepsin
Complexed With Transition State Analogue Inhibitor H261
Length = 329
Score = 52.4 bits (124), Expect = 4e-07, Method: Compositional matrix adjust.
Identities = 61/240 (25%), Positives = 108/240 (45%), Gaps = 18/240 (7%)
Query: 74 NYLDAQYYGEIGIGSPPQSFSVVFDTGSSNLWVPSSKCLFS-ISCYLHSRYRARLSRTYT 132
+ LD Y + IG+P Q+ ++ FDTGSS+LWV SS+ S + +++ ++ ++ +
Sbjct: 11 DSLDDAYITPVQIGTPAQTLNLDFDTGSSDLWVFSSETTASEVXQTIYTPSKSTTAKLLS 70
Query: 133 KIGVPCKIHYGSGQISGFFSQDNVKIGDMIIKDQEFVEVTKEGLLPFLA-LQFDGILGLG 191
GS ++ D V +G + + Q VE K+ F DG+LGL
Sbjct: 71 GATWSISYGDGSSSSGDVYT-DTVSVGGLTVTGQA-VESAKKVSSSFTEDSTIDGLLGLA 128
Query: 192 FRDIAAGNAT--PLWYNMVRQGHISQKIFSLWLNQDPNSEVGGEIIFGGFDWRHFRGSHI 249
F + + T +++ + + +F+ D G FG D + GS
Sbjct: 129 FSTLNTVSPTQQKTFFDNAKA-SLDSPVFT----ADLGYHAPGTYNFGFIDTTAYTGSIT 183
Query: 250 YVPI-TEKGYWQIKVGDILIENSSTGFCEDGCTAILDSGTSVLAGPTTVV----AQINHA 304
Y + T++G+W+ + + + F I D+GT++L P TVV AQ++ A
Sbjct: 184 YTAVSTKQGFWEWTSTGYAVGSGT--FKSTSIDGIADTGTTLLYLPATVVSAYWAQVSGA 241
>pdb|1GVT|A Chain A, Endothiapepsin Complex With Cp-80,794
pdb|1GVU|A Chain A, Endothiapepsin Complex With H189
pdb|1GVV|A Chain A, Five Atomic Resolution Structures Of Endothiapepsin
Inhibitor Complexes; Implications For The Aspartic
Proteinase Mechanism
pdb|1GVW|A Chain A, Endothiapepsin Complex With Pd-130,328
pdb|1GVX|A Chain A, Endothiapepsin Complexed With H256
pdb|1OEX|A Chain A, Atomic Resolution Structure Of Endothiapepsin In Complex
With A Hydroxyethylene Transition State Analogue
Inhibitor H261
pdb|2JJI|A Chain A, Endothiapepsin In Complex With A Gem-Diol Inhibitor.
pdb|2JJJ|A Chain A, Endothiapepsin In Complex With A Gem-Diol Inhibitor.
pdb|2VS2|A Chain A, Neutron Diffraction Structure Of Endothiapepsin In Complex
With A Gem- Diol Inhibitor.
pdb|3URJ|A Chain A, Type Iv Native Endothiapepsin
pdb|3URI|A Chain A, Endothiapepsin-Db5 Complex.
pdb|3URL|A Chain A, Endothiapepsin-Db6 Complex.
pdb|1OEW|A Chain A, Atomic Resolution Structure Of Native Endothiapepsin
Length = 329
Score = 52.4 bits (124), Expect = 4e-07, Method: Compositional matrix adjust.
Identities = 61/240 (25%), Positives = 108/240 (45%), Gaps = 18/240 (7%)
Query: 74 NYLDAQYYGEIGIGSPPQSFSVVFDTGSSNLWVPSSKCLFS-ISCYLHSRYRARLSRTYT 132
+ LD Y + IG+P Q+ ++ FDTGSS+LWV SS+ S + +++ ++ ++ +
Sbjct: 11 DSLDDAYITPVQIGTPAQTLNLDFDTGSSDLWVFSSETTASEVXQTIYTPSKSTTAKLLS 70
Query: 133 KIGVPCKIHYGSGQISGFFSQDNVKIGDMIIKDQEFVEVTKEGLLPFLA-LQFDGILGLG 191
GS ++ D V +G + + Q VE K+ F DG+LGL
Sbjct: 71 GATWSISYGDGSSSSGDVYT-DTVSVGGLTVTGQA-VESAKKVSSSFTEDSTIDGLLGLA 128
Query: 192 FRDIAAGNAT--PLWYNMVRQGHISQKIFSLWLNQDPNSEVGGEIIFGGFDWRHFRGSHI 249
F + + T +++ + + +F+ D G FG D + GS
Sbjct: 129 FSTLNTVSPTQQKTFFDNAKA-SLDSPVFT----ADLGYHAPGTYNFGFIDTTAYTGSIT 183
Query: 250 YVPI-TEKGYWQIKVGDILIENSSTGFCEDGCTAILDSGTSVLAGPTTVV----AQINHA 304
Y + T++G+W+ + + + F I D+GT++L P TVV AQ++ A
Sbjct: 184 YTAVSTKQGFWEWTSTGYAVGSGT--FKSTSIDGIADTGTTLLYLPATVVSAYWAQVSGA 241
>pdb|1ER8|E Chain E, The Active Site Of Aspartic Proteinases
pdb|2ER0|E Chain E, X-Ray Studies Of Aspartic Proteinase-Statine Inhibitor
Complexes
pdb|2ER6|E Chain E, The Structure Of A Synthetic Pepsin Inhibitor Complexed
With Endothiapepsin.
pdb|2ER7|E Chain E, X-Ray Analyses Of Aspartic Proteinases.Iii.
Three-Dimensional Structure Of Endothiapepsin Complexed
With A Transition-State Isostere Inhibitor Of Renin At
1.6 Angstroms Resolution
pdb|2ER9|E Chain E, X-Ray Studies Of Aspartic Proteinase-Statine Inhibitor
Complexes.
pdb|3ER3|E Chain E, The Active Site Of Aspartic Proteinases
pdb|3ER5|E Chain E, The Active Site Of Aspartic Proteinases
pdb|4ER1|E Chain E, The Active Site Of Aspartic Proteinases
pdb|4ER2|E Chain E, The Active Site Of Aspartic Proteinases
pdb|4ER4|E Chain E, High-Resolution X-Ray Analyses Of Renin Inhibitor-Aspartic
Proteinase Complexes
pdb|5ER1|E Chain E, A Rational Approach To The Design Of Antihypertensives.
X-Ray Studies Of Complexes Between Aspartic Proteinases
And Aminoalcohol Renin Inhibitors
pdb|5ER2|E Chain E, High-Resolution X-Ray Diffraction Study Of The Complex
Between Endothiapepsin And An Oligopeptide Inhibitor.
The Analysis Of The Inhibitor Binding And Description Of
The Rigid Body Shift In The Enzyme
pdb|1EED|P Chain P, X-Ray Crystallographic Analysis Of Inhibition Of
Endothiapepsin By Cyclohexyl Renin Inhibitors
pdb|1ENT|E Chain E, X-Ray Analyses Of Aspartic Proteinases. The
Three-Dimensional Structure At 2.1 Angstroms Resolution
Of Endothiapepsin
pdb|1EPL|E Chain E, A Structural Comparison Of 21 Inhibitor Complexes Of The
Aspartic Proteinase From Endothia Parasitica
pdb|1EPM|E Chain E, A Structural Comparison Of 21 Inhibitor Complexes Of The
Aspartic Proteinase From Endothia Parasitica
pdb|1EPN|E Chain E, A Structural Comparison Of 21 Inhibitor Complexes Of The
Aspartic Proteinase From Endothia Parasitica
pdb|1EPO|E Chain E, Endothia Aspartic Proteinase (Endothiapepsin) Complexed
With Cp-81,282 (Mor Phe Nle Chf Nme)
pdb|1EPP|E Chain E, Endothia Aspartic Proteinase (endothiapepsin) Complexed
With Pd-130, 693 (mas Phe Lys+mtf Sta Mba)
pdb|1EPQ|E Chain E, Endothia Aspartic Proteinase (Endothiapepsin) Complexed
With Pd-133, 450 (Sot Phe Gly+scc Gcl)
pdb|1E5O|E Chain E, Endothiapepsin Complex With Inhibitor Db2
pdb|1E81|E Chain E, Endothiapepsin Complex With Renin Inhibitor
Merck-Kgaa-Emd61395
pdb|1E82|E Chain E, Endothiapepsin Complex With Renin Inhibitor
Merck-Kgaa-Emd59601
pdb|1E80|E Chain E, Endothiapepsin Complex With Renin Inhibitor
Merck-Kgaa-Emd56133
pdb|1OD1|A Chain A, Endothiapepsin Pd135,040 Complex
pdb|4APE|A Chain A, The Active Site Of Aspartic Proteinases
pdb|2V00|A Chain A, X-Ray Crystal Structure Of Endothiapepsin Complexed With
Compound 1
pdb|3LZY|A Chain A, Crystal Structure Of Endothiapesin In Complex With Xenon
pdb|3PB5|A Chain A, Endothiapepsin In Complex With A Fragment
pdb|3PBD|A Chain A, Endothiapepsin In Complex With A Fragment
pdb|3PBZ|A Chain A, Endothiapepsin In Complex With A Fragment
pdb|3PCW|A Chain A, Endothiapepsin In Complex With A Fragment
pdb|3PCZ|A Chain A, Endothiapepsin In Complex With Benzamidine
pdb|3PGI|A Chain A, Endothiapepsin In Complex With A Fragment
pdb|3PRS|A Chain A, Endothiapepsin In Complex With Ritonavir
pdb|3PI0|A Chain A, Endothiapepsin In Complex With A Fragment
pdb|3PLD|A Chain A, Endothiapepsin In Complex With A Fragment
pdb|3PLL|A Chain A, Endothiapepsin In Complex With A Fragment
pdb|3PM4|A Chain A, Endothiapepsin In Complex With A Fragment
pdb|3PMU|A Chain A, Endothiapepsin In Complex With A Fragment
pdb|3PMY|A Chain A, Endothiapepsin In Complex With A Fragment
pdb|3PSY|A Chain A, Endothiapepsin In Complex With An Inhibitor Based On The
Gewald Reaction
pdb|3PWW|A Chain A, Endothiapepsin In Complex With Saquinavir
pdb|3Q6Y|A Chain A, Endothiapepsin In Complex With A Pyrrolidine Based
Inhibitor
pdb|3T6I|A Chain A, Endothiapepsin In Complex With An Azepin Derivative
pdb|3T7P|A Chain A, Endothiapepsin In Complex With A Hydrazide Derivative
pdb|3T7Q|A Chain A, Endothiapepsin In Complex With An Inhibitor Based On The
Gewald Reaction
pdb|3T7X|A Chain A, Endothiapepsin In Complex With An Inhibitor Based On The
Gewald Reaction
Length = 330
Score = 50.4 bits (119), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 66/244 (27%), Positives = 106/244 (43%), Gaps = 25/244 (10%)
Query: 74 NYLDAQYYGEIGIGSPPQSFSVVFDTGSSNLWVPSSKCLFS----ISCYLHSR-YRARLS 128
+ LD Y + IG+P Q+ ++ FDTGSS+LWV SS+ S + Y S+ A+L
Sbjct: 11 DSLDDAYITPVQIGTPAQTLNLDFDTGSSDLWVFSSETTASEVDGQTIYTPSKSTTAKLL 70
Query: 129 RTYTKIGVPCKIHYGSGQISGFFSQDNVKIGDMIIKDQEFVEVTKEGLLPFLA-LQFDGI 187
T SG + D V +G + + Q VE K+ F DG+
Sbjct: 71 SGATWSISYGDGSSSSGDV----YTDTVSVGGLTVTGQA-VESAKKVSSSFTEDSTIDGL 125
Query: 188 LGLGFRDIAAGNAT--PLWYNMVRQGHISQKIFSLWLNQDPNSEVGGEIIFGGFDWRHFR 245
LGL F + + T +++ + + +F+ D G FG D +
Sbjct: 126 LGLAFSTLNTVSPTQQKTFFDNAKA-SLDSPVFT----ADLGYHAPGTYNFGFIDTTAYT 180
Query: 246 GSHIYVPI-TEKGYWQIKVGDILIENSSTGFCEDGCTAILDSGTSVLAGPTTVV----AQ 300
GS Y + T++G+W+ + + + F I D+GT++L P TVV AQ
Sbjct: 181 GSITYTAVSTKQGFWEWTSTGYAVGSGT--FKSTSIDGIADTGTTLLYLPATVVSAYWAQ 238
Query: 301 INHA 304
++ A
Sbjct: 239 VSGA 242
>pdb|1EPR|E Chain E, Endothia Aspartic Proteinase (Endothiapepsin) Complexed
With Pd-135, 040
Length = 330
Score = 50.4 bits (119), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 66/244 (27%), Positives = 106/244 (43%), Gaps = 25/244 (10%)
Query: 74 NYLDAQYYGEIGIGSPPQSFSVVFDTGSSNLWVPSSKCLFS----ISCYLHSR-YRARLS 128
+ LD Y + IG+P Q+ ++ FDTGSS+LWV SS+ S + Y S+ A+L
Sbjct: 11 DSLDDAYITPVQIGTPAQTLNLDFDTGSSDLWVFSSETTASEVDGQTIYTPSKSTTAKLL 70
Query: 129 RTYTKIGVPCKIHYGSGQISGFFSQDNVKIGDMIIKDQEFVEVTKEGLLPFLA-LQFDGI 187
T SG + D V +G + + Q VE K+ F DG+
Sbjct: 71 SGATWSISYGDGSSSSGDV----YTDTVSVGGLTVTGQA-VESAKKVSSSFTEDSTIDGL 125
Query: 188 LGLGFRDIAAGNAT--PLWYNMVRQGHISQKIFSLWLNQDPNSEVGGEIIFGGFDWRHFR 245
LGL F + + T +++ + + +F+ D G FG D +
Sbjct: 126 LGLAFSTLNTVSPTQXKTFFDNAKA-SLDSPVFT----ADLGYHAPGTYNFGFIDTTAYT 180
Query: 246 GSHIYVPI-TEKGYWQIKVGDILIENSSTGFCEDGCTAILDSGTSVLAGPTTVV----AQ 300
GS Y + T++G+W+ + + + F I D+GT++L P TVV AQ
Sbjct: 181 GSITYTAVSTKQGFWEWTSTGYAVGSGT--FKSTSIDGIADTGTTLLYLPATVVSAYWAQ 238
Query: 301 INHA 304
++ A
Sbjct: 239 VSGA 242
>pdb|1IZD|A Chain A, Crystal Structure Of Aspergillus Oryzae Aspartic
Proteinase
pdb|1IZE|A Chain A, Crystal Structure Of Aspergillus Oryzae Aspartic
Proteinase Complexed With Pepstatin
Length = 323
Score = 49.7 bits (117), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 66/232 (28%), Positives = 98/232 (42%), Gaps = 42/232 (18%)
Query: 77 DAQYYGEIGIGSPPQSFSVVFDTGSSNLWVPSSKCLFSISCYLHSRYRARLSRTYTKI-G 135
D +Y ++ +G + + FDTGS++LWV SS+ S H Y S KI G
Sbjct: 14 DEEYITQVTVGD--DTLGLDFDTGSADLWVFSSQTPSSERS-GHDYYTPGSSA--QKIDG 68
Query: 136 VPCKIHYGSG-QISGFFSQDNVKIGDMIIKDQEFVEVTKEGLLPFLA-LQFDGILGLGFR 193
I YG G SG +D V +G + D + VE ++ F DG+LGL F
Sbjct: 69 ATWSISYGDGSSASGDVYKDKVTVG-GVSYDSQAVESAEKVSSEFTQDTANDGLLGLAFS 127
Query: 194 DIAAGNATP--LWYNMVRQGHISQKIFSLWLNQDPNSEVGGEIIFGGFDWRHFRGSHIYV 251
I TP +++ V+ +S+ IF++ L + G FG D + GS Y
Sbjct: 128 SINTVQPTPQKTFFDNVKS-SLSEPIFAVALKHN----APGVYDFGYTDSSKYTGSITYT 182
Query: 252 PI-TEKGYWQIKVGDILIENSSTGFCEDG-----------CTAILDSGTSVL 291
+ +G+W GF DG T I D+GT++L
Sbjct: 183 DVDNSQGFW--------------GFTADGYSIGSDSSSDSITGIADTGTTLL 220
>pdb|1IBQ|A Chain A, Aspergillopepsin From Aspergillus Phoenicis
pdb|1IBQ|B Chain B, Aspergillopepsin From Aspergillus Phoenicis
Length = 325
Score = 46.6 bits (109), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 52/187 (27%), Positives = 76/187 (40%), Gaps = 13/187 (6%)
Query: 77 DAQYYGEIGIGSPPQSFSVVFDTGSSNLWVPSSKCLFSISCYLHSRYRARLSRTYTKIGV 136
D +Y + +G + + FDTGS++LWV S + L S H Y S T G
Sbjct: 13 DEEYLTPVTVGK--STLHLDFDTGSADLWVFSDE-LPSSEQTGHDLYTPSSSATKLS-GY 68
Query: 137 PCKIHYGSG-QISGFFSQDNVKIGDMIIKDQEFVEVTKEGLLPFLALQFDGILGLGFRDI 195
I YG G SG +D V +G + Q +K DG+LGL F I
Sbjct: 69 SWDISYGDGSSASGDVYRDTVTVGGVTTNKQAVEAASKISSEFVQDTANDGLLGLAFSSI 128
Query: 196 --AAGNATPLWYNMVRQGHISQKIFSLWLNQDPNSEVGGEIIFGGFDWRHFRGSHIYVPI 253
A +++ V+ + +F++ L D G FG D + GS Y
Sbjct: 129 NTVQPKAQTTFFDTVKS-QLDSPLFAVQLKHD----APGVYDFGYIDDSKYTGSITYTDA 183
Query: 254 -TEKGYW 259
+ +GYW
Sbjct: 184 DSSQGYW 190
>pdb|3C9X|A Chain A, Crystal Structure Of Trichoderma Reesei Aspartic
Proteinase
pdb|3EMY|A Chain A, Crystal Structure Of Trichoderma Reesei Aspartic
Proteinase Complexed With Pepstatin A
Length = 329
Score = 44.3 bits (103), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 61/233 (26%), Positives = 91/233 (39%), Gaps = 24/233 (10%)
Query: 63 NHPKADVVYLNNYLDAQYYGEIGIGSPPQSFSVVFDTGSSNLWVPSSKCLFSISCYLHSR 122
NHP ++ D++Y + IG+P Q + FDTGSS+LWV SS+ S S H+
Sbjct: 7 NHP-------SDSADSEYITSVSIGTPAQVLPLDFDTGSSDLWVFSSETPKS-SATGHAI 58
Query: 123 YRARLSRTYTKIGVPC--KIHYGSGQISGFFSQDNVKIGDMIIKDQEFVEVTKEGLLPFL 180
Y S T K+ + SG D V IG + Q T+
Sbjct: 59 YTPSKSSTSKKVSGASWSISYGDGSSSSGDVYTDKVTIGGFSVNTQGVESATRVSTEFVQ 118
Query: 181 ALQFDGILGLGFRDIAAGNATP--LWYNMVRQGHISQKIFSLWLNQDPNSEVGGEIIFGG 238
G++GL F P W++ +++ +F+ L N G FG
Sbjct: 119 DTVISGLVGLAFDSGNQVRPHPQKTWFSNAAS-SLAEPLFTADLRHGQN----GSYNFGY 173
Query: 239 FDWRHFRGSHIYVPI-TEKGYWQIKV------GDILIENSSTGFCEDGCTAIL 284
D +G Y P+ +G+W+ G L NS G + G T +L
Sbjct: 174 IDTSVAKGPVAYTPVDNSQGFWEFTASGYSVGGGKLNRNSIDGIADTGTTLLL 226
>pdb|1M12|A Chain A, Nmr Solution Structure Of Human Saposin C
pdb|1SN6|A Chain A, Nmr Solution Structure Of Human Saposin C In Sds Micelles
Length = 84
Score = 35.4 bits (80), Expect = 0.053, Method: Composition-based stats.
Identities = 16/36 (44%), Positives = 22/36 (61%)
Query: 311 VSMQCKTVVFEYGNMIWEFLISGVQPETVCSDIGLC 346
+S +C+ VV YG+ I L+ V PE VCS + LC
Sbjct: 43 LSEECQEVVDTYGSSILSILLEEVSPELVCSMLHLC 78
>pdb|2Z9A|A Chain A, Crystal Structure Of Human Saposin C Dimer In Open
Conformation
pdb|2Z9A|B Chain B, Crystal Structure Of Human Saposin C Dimer In Open
Conformation
Length = 88
Score = 35.4 bits (80), Expect = 0.053, Method: Composition-based stats.
Identities = 16/36 (44%), Positives = 22/36 (61%)
Query: 311 VSMQCKTVVFEYGNMIWEFLISGVQPETVCSDIGLC 346
+S +C+ VV YG+ I L+ V PE VCS + LC
Sbjct: 45 LSEECQEVVDTYGSSILSILLEEVSPELVCSMLHLC 80
>pdb|2QYP|A Chain A, Orthorhombic Crystal Structure Of Human Saposin C Dimer In
Open Conformation
pdb|2QYP|B Chain B, Orthorhombic Crystal Structure Of Human Saposin C Dimer In
Open Conformation
Length = 91
Score = 35.4 bits (80), Expect = 0.053, Method: Composition-based stats.
Identities = 16/36 (44%), Positives = 22/36 (61%)
Query: 311 VSMQCKTVVFEYGNMIWEFLISGVQPETVCSDIGLC 346
+S +C+ VV YG+ I L+ V PE VCS + LC
Sbjct: 46 LSEECQEVVDTYGSSILSILLEEVSPELVCSMLHLC 81
>pdb|2GTG|A Chain A, Crystal Structure Of Human Saposin C
Length = 83
Score = 35.4 bits (80), Expect = 0.053, Method: Composition-based stats.
Identities = 16/36 (44%), Positives = 22/36 (61%)
Query: 311 VSMQCKTVVFEYGNMIWEFLISGVQPETVCSDIGLC 346
+S +C+ VV YG+ I L+ V PE VCS + LC
Sbjct: 45 LSEECQEVVDTYGSSILSILLEEVSPELVCSMLHLC 80
>pdb|1FUI|A Chain A, L-Fucose Isomerase From Escherichia Coli
pdb|1FUI|B Chain B, L-Fucose Isomerase From Escherichia Coli
pdb|1FUI|C Chain C, L-Fucose Isomerase From Escherichia Coli
pdb|1FUI|D Chain D, L-Fucose Isomerase From Escherichia Coli
pdb|1FUI|E Chain E, L-Fucose Isomerase From Escherichia Coli
pdb|1FUI|F Chain F, L-Fucose Isomerase From Escherichia Coli
Length = 591
Score = 32.0 bits (71), Expect = 0.58, Method: Compositional matrix adjust.
Identities = 30/141 (21%), Positives = 51/141 (36%), Gaps = 39/141 (27%)
Query: 187 ILGLGFRDIAAGNAT---------PLWYNMVRQGHISQKIFSLWLNQDPNSEVGGEIIFG 237
++ + RD+ GN+ L YN + G Q+ W +Q PN + I+
Sbjct: 265 LMAMCIRDMMQGNSKLADIGRVEESLGYNAIAAGFQGQR---HWTDQYPNGDTAEAILNS 321
Query: 238 GFDWRHFRGSHIYVPITE-------------------------KGYWQIKVGDILIENSS 272
FDW R +V TE + YW + + + +
Sbjct: 322 SFDWNGVR--EPFVVATENDSLNGVAMLMGHQLTGTAQVFADVRTYWSPEAIERVTGHKL 379
Query: 273 TGFCEDGCTAILDSGTSVLAG 293
G E G +++SG++ L G
Sbjct: 380 DGLAEHGIIHLINSGSAALDG 400
>pdb|2W5E|A Chain A, Structural And Biochemical Analysis Of Human Pathogenic
Astrovirus Serine Protease At 2.0 Angstrom Resolution
pdb|2W5E|B Chain B, Structural And Biochemical Analysis Of Human Pathogenic
Astrovirus Serine Protease At 2.0 Angstrom Resolution
pdb|2W5E|C Chain C, Structural And Biochemical Analysis Of Human Pathogenic
Astrovirus Serine Protease At 2.0 Angstrom Resolution
pdb|2W5E|D Chain D, Structural And Biochemical Analysis Of Human Pathogenic
Astrovirus Serine Protease At 2.0 Angstrom Resolution
pdb|2W5E|E Chain E, Structural And Biochemical Analysis Of Human Pathogenic
Astrovirus Serine Protease At 2.0 Angstrom Resolution
pdb|2W5E|F Chain F, Structural And Biochemical Analysis Of Human Pathogenic
Astrovirus Serine Protease At 2.0 Angstrom Resolution
Length = 163
Score = 31.2 bits (69), Expect = 1.00, Method: Compositional matrix adjust.
Identities = 15/45 (33%), Positives = 24/45 (53%)
Query: 133 KIGVPCKIHYGSGQISGFFSQDNVKIGDMIIKDQEFVEVTKEGLL 177
K G C I G+ +GFFS +++ ++ + FV V EGL+
Sbjct: 9 KPGALCVIDTPEGKGTGFFSGNDIVTAAHVVGNNTFVNVCYEGLM 53
>pdb|2RB3|A Chain A, Crystal Structure Of Human Saposin D
pdb|2RB3|B Chain B, Crystal Structure Of Human Saposin D
pdb|2RB3|C Chain C, Crystal Structure Of Human Saposin D
pdb|2RB3|D Chain D, Crystal Structure Of Human Saposin D
Length = 85
Score = 29.6 bits (65), Expect = 2.8, Method: Composition-based stats.
Identities = 13/33 (39%), Positives = 17/33 (51%)
Query: 314 QCKTVVFEYGNMIWEFLISGVQPETVCSDIGLC 346
QC V EY ++ E L+ + P VC IG C
Sbjct: 45 QCDQFVAEYEPVLIEILVEVMDPSFVCLKIGAC 77
>pdb|2R0R|A Chain A, Crystal Structure Of Human Saposin D Variant Sapd K9e
pdb|2R0R|B Chain B, Crystal Structure Of Human Saposin D Variant Sapd K9e
Length = 85
Score = 29.6 bits (65), Expect = 2.8, Method: Composition-based stats.
Identities = 13/33 (39%), Positives = 17/33 (51%)
Query: 314 QCKTVVFEYGNMIWEFLISGVQPETVCSDIGLC 346
QC V EY ++ E L+ + P VC IG C
Sbjct: 45 QCDQFVAEYEPVLIEILVEVMDPSFVCLKIGAC 77
>pdb|3BQP|A Chain A, Crystal Structure Of Human Saposin D (Orthorhombic)
pdb|3BQP|B Chain B, Crystal Structure Of Human Saposin D (Orthorhombic)
pdb|3BQQ|C Chain C, Crystal Structure Of Human Saposin D (Triclinic)
pdb|3BQQ|A Chain A, Crystal Structure Of Human Saposin D (Triclinic)
pdb|3BQQ|B Chain B, Crystal Structure Of Human Saposin D (Triclinic)
pdb|3BQQ|D Chain D, Crystal Structure Of Human Saposin D (Triclinic)
Length = 80
Score = 29.6 bits (65), Expect = 2.8, Method: Composition-based stats.
Identities = 13/33 (39%), Positives = 17/33 (51%)
Query: 314 QCKTVVFEYGNMIWEFLISGVQPETVCSDIGLC 346
QC V EY ++ E L+ + P VC IG C
Sbjct: 46 QCDQFVAEYEPVLIEILVEVMDPSFVCLKIGAC 78
>pdb|2L5T|A Chain A, Solution Nmr Structure Of E2 Lipoyl Domain From
Thermoplasma Acidophilum
Length = 77
Score = 28.9 bits (63), Expect = 4.4, Method: Composition-based stats.
Identities = 14/32 (43%), Positives = 19/32 (59%)
Query: 143 GSGQISGFFSQDNVKIGDMIIKDQEFVEVTKE 174
G G G + +VK GDM+ KDQ+ VEV +
Sbjct: 10 GEGVTEGEIVRWDVKEGDMVEKDQDLVEVMTD 41
>pdb|1AYL|A Chain A, Phosphoenolpyruvate Carboxykinase
Length = 541
Score = 28.1 bits (61), Expect = 7.3, Method: Compositional matrix adjust.
Identities = 14/46 (30%), Positives = 25/46 (54%)
Query: 297 VVAQINHAIGAEGIVSMQCKTVVFEYGNMIWEFLISGVQPETVCSD 342
+ + +N+ + +GI SM C V E G++ F +SG T+ +D
Sbjct: 215 MFSMMNYLLPLKGIASMHCSANVGEKGDVAVFFGLSGTGKTTLSTD 260
>pdb|1K3C|A Chain A, Phosphoenolpyruvate Carboxykinase In Complex With Adp,
Alf3 And Pyruvate
pdb|1K3D|A Chain A, Phosphoenolpyruvate Carboxykinase In Complex With Adp And
Alf3
pdb|1OS1|A Chain A, Structure Of Phosphoenolpyruvate Carboxykinase Complexed
With Atp,Mg, Ca And Pyruvate.
pdb|2OLQ|A Chain A, How Does An Enzyme Recognize Co2?
pdb|2OLR|A Chain A, Crystal Structure Of Escherichia Coli Phosphoenolpyruvate
Carboxykinase Complexed With Carbon Dioxide, Mg2+, Atp
pdb|1AQ2|A Chain A, Phosphoenolpyruvate Carboxykinase
pdb|2PXZ|X Chain X, E. Coli Phosphoenolpyruvate Carboxykinase (Pepck)
Complexed With Atp, Mg2+, Mn2+, Carbon Dioxide And
Oxaloacetate
Length = 540
Score = 28.1 bits (61), Expect = 7.3, Method: Compositional matrix adjust.
Identities = 14/46 (30%), Positives = 25/46 (54%)
Query: 297 VVAQINHAIGAEGIVSMQCKTVVFEYGNMIWEFLISGVQPETVCSD 342
+ + +N+ + +GI SM C V E G++ F +SG T+ +D
Sbjct: 215 MFSMMNYLLPLKGIASMHCSANVGEKGDVAVFFGLSGTGKTTLSTD 260
>pdb|2PY7|X Chain X, Crystal Structure Of E. Coli Phosphoenolpyruvate
Carboxykinase Mutant Lys213ser Complexed With
Atp-mg2+-mn2+
Length = 540
Score = 28.1 bits (61), Expect = 7.4, Method: Compositional matrix adjust.
Identities = 14/46 (30%), Positives = 25/46 (54%)
Query: 297 VVAQINHAIGAEGIVSMQCKTVVFEYGNMIWEFLISGVQPETVCSD 342
+ + +N+ + +GI SM C V E G++ F +SG T+ +D
Sbjct: 215 MFSMMNYLLPLKGIASMHCSANVGEKGDVAVFFGLSGTGKTTLSTD 260
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.323 0.140 0.442
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 10,900,001
Number of Sequences: 62578
Number of extensions: 463032
Number of successful extensions: 1449
Number of sequences better than 100.0: 129
Number of HSP's better than 100.0 without gapping: 125
Number of HSP's successfully gapped in prelim test: 4
Number of HSP's that attempted gapping in prelim test: 1040
Number of HSP's gapped (non-prelim): 129
length of query: 355
length of database: 14,973,337
effective HSP length: 100
effective length of query: 255
effective length of database: 8,715,537
effective search space: 2222461935
effective search space used: 2222461935
T: 11
A: 40
X1: 15 ( 7.0 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (22.0 bits)
S2: 52 (24.6 bits)