Query 018462
Match_columns 355
No_of_seqs 249 out of 2065
Neff 9.0
Searched_HMMs 46136
Date Fri Mar 29 09:13:39 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/018462.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/018462hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 PTZ00165 aspartyl protease; Pr 100.0 1.1E-57 2.3E-62 441.5 33.1 313 31-350 63-407 (482)
2 cd06098 phytepsin Phytepsin, a 100.0 7.5E-55 1.6E-59 405.9 28.0 272 70-349 1-278 (317)
3 cd05490 Cathepsin_D2 Cathepsin 100.0 3.2E-54 7E-59 403.3 30.0 275 74-349 1-286 (325)
4 cd05486 Cathespin_E Cathepsin 100.0 4.5E-54 9.7E-59 400.7 27.8 268 80-349 1-277 (316)
5 cd05478 pepsin_A Pepsin A, asp 100.0 1.3E-53 2.8E-58 397.7 30.0 272 70-349 1-282 (317)
6 cd05485 Cathepsin_D_like Cathe 100.0 1.7E-53 3.7E-58 398.6 29.8 278 70-349 2-290 (329)
7 cd05487 renin_like Renin stimu 100.0 2.2E-53 4.9E-58 397.6 30.3 276 72-349 1-286 (326)
8 cd05477 gastricsin Gastricsins 100.0 1.1E-52 2.3E-57 391.8 30.2 268 77-350 1-278 (318)
9 cd05488 Proteinase_A_fungi Fun 100.0 9.4E-53 2E-57 392.4 29.8 271 70-349 1-281 (320)
10 PTZ00147 plasmepsin-1; Provisi 100.0 1.4E-51 2.9E-56 396.2 31.4 276 65-349 125-412 (453)
11 PTZ00013 plasmepsin 4 (PM4); P 100.0 1.4E-50 3.1E-55 388.3 30.9 279 63-350 122-412 (450)
12 PF00026 Asp: Eukaryotic aspar 100.0 4.9E-48 1.1E-52 360.2 23.2 271 79-352 1-281 (317)
13 cd06097 Aspergillopepsin_like 100.0 4.3E-46 9.4E-51 340.9 27.3 239 80-329 1-251 (278)
14 KOG1339 Aspartyl protease [Pos 100.0 6.6E-44 1.4E-48 341.6 24.3 258 67-334 34-341 (398)
15 cd05473 beta_secretase_like Be 100.0 3.5E-43 7.6E-48 333.5 25.8 262 78-347 2-308 (364)
16 cd06096 Plasmepsin_5 Plasmepsi 100.0 8.9E-43 1.9E-47 325.9 23.9 236 78-334 2-277 (326)
17 cd05474 SAP_like SAPs, pepsin- 100.0 1.6E-41 3.4E-46 313.5 25.5 235 79-351 2-262 (295)
18 PLN03146 aspartyl protease fam 100.0 2E-41 4.2E-46 326.4 26.0 254 76-347 81-391 (431)
19 cd05471 pepsin_like Pepsin-lik 100.0 2.4E-40 5.2E-45 303.3 30.0 236 80-317 1-245 (283)
20 cd05472 cnd41_like Chloroplast 100.0 1.7E-40 3.7E-45 307.1 19.6 229 79-347 1-259 (299)
21 cd05476 pepsin_A_like_plant Ch 100.0 2.3E-38 5E-43 287.8 19.8 210 79-347 1-226 (265)
22 cd05475 nucellin_like Nucellin 100.0 1.3E-37 2.8E-42 284.0 22.6 206 78-334 1-220 (273)
23 cd05489 xylanase_inhibitor_I_l 100.0 4.8E-32 1E-36 255.8 19.3 249 86-346 2-321 (362)
24 cd05470 pepsin_retropepsin_lik 99.9 1.9E-24 4.2E-29 169.6 12.7 108 82-190 1-109 (109)
25 PF14543 TAXi_N: Xylanase inhi 99.9 1.3E-22 2.8E-27 170.6 16.2 136 80-238 1-164 (164)
26 cd05483 retropepsin_like_bacte 98.3 2E-06 4.4E-11 65.0 7.0 92 79-192 2-94 (96)
27 PF14541 TAXi_C: Xylanase inhi 98.0 1.2E-05 2.6E-10 67.3 6.0 77 258-334 1-112 (161)
28 TIGR02281 clan_AA_DTGA clan AA 97.7 0.00034 7.4E-09 55.5 9.2 101 70-192 2-103 (121)
29 PF13650 Asp_protease_2: Aspar 97.0 0.004 8.7E-08 46.0 7.8 87 83-191 2-89 (90)
30 COG3577 Predicted aspartyl pro 96.5 0.018 4E-07 48.9 8.3 89 66-169 92-181 (215)
31 cd05479 RP_DDI RP_DDI; retrope 96.2 0.035 7.6E-07 44.2 8.3 92 76-192 13-107 (124)
32 PF11925 DUF3443: Protein of u 96.1 0.083 1.8E-06 49.2 11.4 197 80-297 24-273 (370)
33 cd05484 retropepsin_like_LTR_2 95.0 0.12 2.7E-06 38.4 7.0 75 80-172 1-78 (91)
34 cd06095 RP_RTVL_H_like Retrope 92.6 0.74 1.6E-05 33.8 7.3 80 84-192 3-84 (86)
35 PF07966 A1_Propeptide: A1 Pro 89.9 0.38 8.1E-06 27.6 2.5 24 32-55 1-24 (29)
36 PF13975 gag-asp_proteas: gag- 88.8 0.86 1.9E-05 32.3 4.4 34 76-111 5-38 (72)
37 TIGR02281 clan_AA_DTGA clan AA 86.8 1.7 3.8E-05 34.2 5.4 38 255-302 8-45 (121)
38 PF13650 Asp_protease_2: Aspar 84.1 1.6 3.5E-05 31.7 3.9 31 266-303 3-33 (90)
39 PF00077 RVP: Retroviral aspar 83.7 1.9 4E-05 32.4 4.2 29 81-111 7-35 (100)
40 PF13975 gag-asp_proteas: gag- 82.8 2.5 5.5E-05 29.8 4.3 29 266-301 13-41 (72)
41 cd05484 retropepsin_like_LTR_2 80.3 2.8 6.1E-05 31.0 4.0 32 266-304 5-36 (91)
42 cd05483 retropepsin_like_bacte 78.0 3.8 8.2E-05 30.1 4.1 30 266-302 7-36 (96)
43 cd06095 RP_RTVL_H_like Retrope 74.2 4.4 9.5E-05 29.6 3.4 29 266-301 3-31 (86)
44 PF09668 Asp_protease: Asparty 73.2 8.1 0.00018 30.6 4.9 79 77-171 22-102 (124)
45 cd05482 HIV_retropepsin_like R 71.5 7 0.00015 28.9 3.9 27 83-111 2-28 (87)
46 cd05479 RP_DDI RP_DDI; retrope 70.8 6.2 0.00013 31.1 3.8 60 266-332 21-92 (124)
47 PF08284 RVP_2: Retroviral asp 67.8 43 0.00092 26.9 8.1 29 78-108 20-48 (135)
48 PF07172 GRP: Glycine rich pro 66.2 4.5 9.8E-05 30.4 2.0 21 1-21 1-21 (95)
49 PF00077 RVP: Retroviral aspar 63.2 6.7 0.00015 29.3 2.5 29 266-301 10-38 (100)
50 COG3577 Predicted aspartyl pro 57.0 23 0.00051 30.5 4.9 40 256-305 103-142 (215)
51 PF12384 Peptidase_A2B: Ty3 tr 56.6 16 0.00035 30.3 3.7 29 81-109 34-62 (177)
52 PF09668 Asp_protease: Asparty 55.1 16 0.00036 28.9 3.5 29 266-301 29-57 (124)
53 TIGR03698 clan_AA_DTGF clan AA 54.0 9.9 0.00021 29.2 2.1 22 280-301 17-39 (107)
54 COG5550 Predicted aspartyl pro 53.9 8.4 0.00018 30.3 1.6 23 282-304 29-52 (125)
55 cd05481 retropepsin_like_LTR_1 52.0 18 0.00038 27.0 3.1 23 280-302 11-33 (93)
56 PF12384 Peptidase_A2B: Ty3 tr 51.2 28 0.00061 28.9 4.3 54 278-332 44-110 (177)
57 cd05470 pepsin_retropepsin_lik 50.7 14 0.00031 27.8 2.5 21 278-298 10-30 (109)
58 PF05984 Cytomega_UL20A: Cytom 49.9 17 0.00038 26.2 2.5 21 1-21 1-21 (100)
59 PRK02710 plastocyanin; Provisi 41.2 40 0.00087 26.3 3.7 20 1-20 1-20 (119)
60 TIGR03475 tap_IncFII_lead RepA 37.0 33 0.00072 18.6 1.8 21 1-21 1-21 (26)
61 TIGR03698 clan_AA_DTGF clan AA 36.8 46 0.00099 25.4 3.4 66 82-163 2-73 (107)
62 PF08194 DIM: DIM protein; In 31.7 71 0.0015 19.3 2.8 8 14-21 10-17 (36)
63 cd06094 RP_Saci_like RP_Saci_l 31.1 2.2E+02 0.0048 21.1 6.1 22 91-112 8-29 (89)
64 PRK14745 RepA leader peptide T 28.6 46 0.00099 18.0 1.4 21 1-21 1-21 (26)
65 PF15240 Pro-rich: Proline-ric 28.3 37 0.0008 28.6 1.6 15 7-21 1-15 (179)
66 PF08048 RepA1_leader: Tap Rep 28.3 65 0.0014 17.4 2.0 21 1-21 1-21 (25)
67 cd06097 Aspergillopepsin_like 27.7 51 0.0011 29.7 2.7 28 265-297 4-31 (278)
68 PF08284 RVP_2: Retroviral asp 27.3 65 0.0014 25.8 2.9 23 280-302 33-55 (135)
69 PRK14758 hypothetical protein; 25.8 83 0.0018 17.4 2.1 21 1-21 1-21 (27)
70 cd05474 SAP_like SAPs, pepsin- 24.0 69 0.0015 28.9 2.9 25 265-294 6-30 (295)
71 cd05490 Cathepsin_D2 Cathepsin 23.5 68 0.0015 29.7 2.7 27 266-297 11-37 (325)
72 cd05471 pepsin_like Pepsin-lik 23.4 1.1E+02 0.0024 27.2 4.0 44 68-111 170-221 (283)
73 cd05476 pepsin_A_like_plant Ch 22.9 74 0.0016 28.4 2.8 18 278-295 13-30 (265)
74 cd00303 retropepsin_like Retro 22.4 1.7E+02 0.0036 19.5 4.1 22 280-301 10-31 (92)
75 cd06096 Plasmepsin_5 Plasmepsi 22.1 83 0.0018 29.2 3.0 28 265-297 7-34 (326)
76 cd05477 gastricsin Gastricsins 21.9 80 0.0017 29.1 2.9 27 265-296 7-33 (318)
77 cd06098 phytepsin Phytepsin, a 21.6 77 0.0017 29.2 2.7 32 258-297 10-41 (317)
78 cd05486 Cathespin_E Cathepsin 21.4 79 0.0017 29.1 2.7 19 278-296 12-30 (316)
79 cd05472 cnd41_like Chloroplast 21.3 87 0.0019 28.5 2.9 25 266-295 6-30 (299)
80 cd05480 NRIP_C NRIP_C; putativ 21.2 1.4E+02 0.0031 22.7 3.4 20 281-300 11-30 (103)
No 1
>PTZ00165 aspartyl protease; Provisional
Probab=100.00 E-value=1.1e-57 Score=441.54 Aligned_cols=313 Identities=33% Similarity=0.589 Sum_probs=260.7
Q ss_pred ceEEEeeeeeechhhhHHhhhhh---hhhhccccc------CCCCceeEeceecCCceEEEEEEEcCCCcEEEEEEeCCC
Q 018462 31 GLLRIQLKKRQLGINTINAARLI---TKNEVHNRF------NHPKADVVYLNNYLDAQYYGEIGIGSPPQSFSVVFDTGS 101 (355)
Q Consensus 31 ~~~~ipl~~~~~~~~~~~~~~~~---~~~~~~~~~------~~~~~~~~~l~~~~~~~y~~~i~iGtP~q~~~v~~DTGS 101 (355)
.++||||+|.++.|+.+.+.+.. .+....+.+ .......+||.|+.|.+|+++|+||||||+|+|+|||||
T Consensus 63 ~~~~i~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~n~~d~~Y~~~I~IGTPpQ~f~Vv~DTGS 142 (482)
T PTZ00165 63 PAHKVELHRFALLKKKRKKNSEKGYISRVLTKHKYLETKDPNGLQYLQQDLLNFHNSQYFGEIQVGTPPKSFVVVFDTGS 142 (482)
T ss_pred heEEeeeEEcchHHHhhhhHHHHHhhhhhhhccccccccccccccccceecccccCCeEEEEEEeCCCCceEEEEEeCCC
Confidence 57999999988776654443111 011000000 001346799999999999999999999999999999999
Q ss_pred CceeEeCCCCCCCcccCCCCcccCCCCcceee--cCc---eEEEEeCCccEEEeEEEeeeeeeeeeecCcEEEEEEecCC
Q 018462 102 SNLWVPSSKCLFSISCYLHSRYRARLSRTYTK--IGV---PCKIHYGSGQISGFFSQDNVKIGDMIIKDQEFVEVTKEGL 176 (355)
Q Consensus 102 ~~~wv~~~~C~~~~~C~~~~~y~~~~Sst~~~--~~~---~~~~~Y~~g~~~G~~~~D~v~ig~~~~~~~~fg~~~~~~~ 176 (355)
+++||++..|. ...|..|+.|||++|+||+. .+. .+.++|++|++.|.+++|+|+||+..+++|.||++...++
T Consensus 143 S~lWVps~~C~-~~~C~~~~~yd~s~SSTy~~~~~~~~~~~~~i~YGsGs~~G~l~~DtV~ig~l~i~~q~FG~a~~~s~ 221 (482)
T PTZ00165 143 SNLWIPSKECK-SGGCAPHRKFDPKKSSTYTKLKLGDESAETYIQYGTGECVLALGKDTVKIGGLKVKHQSIGLAIEESL 221 (482)
T ss_pred CCEEEEchhcC-cccccccCCCCccccCCcEecCCCCccceEEEEeCCCcEEEEEEEEEEEECCEEEccEEEEEEEeccc
Confidence 99999999997 56899999999999999998 555 6889999999999999999999999999999999998766
Q ss_pred ccccccccceeeccccccc---cCCCCCchhHHHHHcCCCCccEEEEEecCCCCCCcccEEEECCcCCCCc--ccceEEE
Q 018462 177 LPFLALQFDGILGLGFRDI---AAGNATPLWYNMVRQGHISQKIFSLWLNQDPNSEVGGEIIFGGFDWRHF--RGSHIYV 251 (355)
Q Consensus 177 ~~~~~~~~~GilGLg~~~~---s~~~~~~~~~~l~~~g~i~~~~fs~~l~~~~~~~~~G~l~~Gg~d~~~~--~g~l~~~ 251 (355)
..|...++|||||||++.. +.....|++++|++||+|++++||+||.+..+ .+|+|+|||+|++++ .|++.|+
T Consensus 222 ~~f~~~~~DGILGLg~~~~s~~s~~~~~p~~~~l~~qgli~~~~FS~yL~~~~~--~~G~l~fGGiD~~~~~~~g~i~~~ 299 (482)
T PTZ00165 222 HPFADLPFDGLVGLGFPDKDFKESKKALPIVDNIKKQNLLKRNIFSFYMSKDLN--QPGSISFGSADPKYTLEGHKIWWF 299 (482)
T ss_pred cccccccccceeecCCCcccccccCCCCCHHHHHHHcCCcccceEEEEeccCCC--CCCEEEeCCcCHHHcCCCCceEEE
Confidence 5677778999999999887 33456889999999999999999999986532 379999999999877 5789999
Q ss_pred eccCcceeEEEEeeEEEcCeEeEeecCCeeEEEccCccCcccCHHHHHHHHHHhCCCceEEEeCCc------eecccCCE
Q 018462 252 PITEKGYWQIKVGDILIENSSTGFCEDGCTAILDSGTSVLAGPTTVVAQINHAIGAEGIVSMQCKT------VVFEYGNM 325 (355)
Q Consensus 252 p~~~~~~w~v~~~~i~vg~~~~~~~~~~~~aiiDTGt~~i~lP~~~~~~i~~~i~~~~~~~v~C~~------i~~~fg~~ 325 (355)
|+.+.+||+|.+++|+++++.+..+..++.|++||||+++++|++++++|.+++++. .+|++ +.|.||+.
T Consensus 300 Pv~~~~yW~i~l~~i~vgg~~~~~~~~~~~aIiDTGTSli~lP~~~~~~i~~~i~~~----~~C~~~~~lP~itf~f~g~ 375 (482)
T PTZ00165 300 PVISTDYWEIEVVDILIDGKSLGFCDRKCKAAIDTGSSLITGPSSVINPLLEKIPLE----EDCSNKDSLPRISFVLEDV 375 (482)
T ss_pred EccccceEEEEeCeEEECCEEeeecCCceEEEEcCCCccEeCCHHHHHHHHHHcCCc----ccccccccCCceEEEECCC
Confidence 999999999999999999988766667789999999999999999999999999875 48984 67888865
Q ss_pred -----EEEEecCCcCccc--cccccCceEeCC
Q 018462 326 -----IWEFLISGVQPET--VCSDIGLCVYNG 350 (355)
Q Consensus 326 -----~~~~~~~~~~~~~--~~~~~~~C~~~~ 350 (355)
.|++++.++..+. ...+.+.|+++.
T Consensus 376 ~g~~v~~~l~p~dYi~~~~~~~~~~~~C~~g~ 407 (482)
T PTZ00165 376 NGRKIKFDMDPEDYVIEEGDSEEQEHQCVIGI 407 (482)
T ss_pred CCceEEEEEchHHeeeecccCCCCCCeEEEEE
Confidence 8999999984332 234667898743
No 2
>cd06098 phytepsin Phytepsin, a plant homolog of mammalian lysosomal pepsins. Phytepsin, a plant homolog of mammalian lysosomal pepsins, resides in grains, roots, stems, leaves and flowers. Phytepsin may participate in metabolic turnover and in protein processing events. In addition, it highly expressed in several plant tissues undergoing apoptosis. Phytepsin contains an internal region consisting of about 100 residues not present in animal or microbial pepsins. This region is thus called a plant specific insert. The insert is highly similar to saponins, which are lysosomal sphingolipid-activating proteins in mammalian cells. The saponin-like domain may have a role in the vacuolar targeting of phytepsin. Phytepsin, as its animal counterparts, possesses a topology typical of all aspartic proteases. They are bilobal enzymes, each lobe contributing a catalytic Asp residue, with an extended active site cleft localized between the two lobes of the molecule. One lobe has probably evolved fro
Probab=100.00 E-value=7.5e-55 Score=405.90 Aligned_cols=272 Identities=57% Similarity=1.078 Sum_probs=241.9
Q ss_pred EeceecCCceEEEEEEEcCCCcEEEEEEeCCCCceeEeCCCCCCCcccCCCCcccCCCCcceeecCceEEEEeCCccEEE
Q 018462 70 VYLNNYLDAQYYGEIGIGSPPQSFSVVFDTGSSNLWVPSSKCLFSISCYLHSRYRARLSRTYTKIGVPCKIHYGSGQISG 149 (355)
Q Consensus 70 ~~l~~~~~~~y~~~i~iGtP~q~~~v~~DTGS~~~wv~~~~C~~~~~C~~~~~y~~~~Sst~~~~~~~~~~~Y~~g~~~G 149 (355)
++|.|+.|.+|+++|+||||||+|+|+|||||+++||++..|.....|..++.|+|++|+||+..+..+.+.|++|++.|
T Consensus 1 ~~l~n~~~~~Y~~~i~iGtP~Q~~~v~~DTGSs~lWv~~~~C~~~~~C~~~~~y~~~~SsT~~~~~~~~~i~Yg~G~~~G 80 (317)
T cd06098 1 VALKNYLDAQYFGEIGIGTPPQKFTVIFDTGSSNLWVPSSKCYFSIACYFHSKYKSSKSSTYKKNGTSASIQYGTGSISG 80 (317)
T ss_pred CcccccCCCEEEEEEEECCCCeEEEEEECCCccceEEecCCCCCCccccccCcCCcccCCCcccCCCEEEEEcCCceEEE
Confidence 47899999999999999999999999999999999999999975568999999999999999999999999999999999
Q ss_pred eEEEeeeeeeeeeecCcEEEEEEecCCccccccccceeeccccccccCCCCCchhHHHHHcCCCCccEEEEEecCCCCCC
Q 018462 150 FFSQDNVKIGDMIIKDQEFVEVTKEGLLPFLALQFDGILGLGFRDIAAGNATPLWYNMVRQGHISQKIFSLWLNQDPNSE 229 (355)
Q Consensus 150 ~~~~D~v~ig~~~~~~~~fg~~~~~~~~~~~~~~~~GilGLg~~~~s~~~~~~~~~~l~~~g~i~~~~fs~~l~~~~~~~ 229 (355)
.+++|+|+||+..++++.|+++.......+....++||||||++..+.....|++.+|++||+|++++||+||.+..+..
T Consensus 81 ~~~~D~v~ig~~~v~~~~f~~~~~~~~~~~~~~~~dGilGLg~~~~s~~~~~~~~~~l~~qg~i~~~~FS~~L~~~~~~~ 160 (317)
T cd06098 81 FFSQDSVTVGDLVVKNQVFIEATKEPGLTFLLAKFDGILGLGFQEISVGKAVPVWYNMVEQGLVKEPVFSFWLNRNPDEE 160 (317)
T ss_pred EEEeeEEEECCEEECCEEEEEEEecCCccccccccceeccccccchhhcCCCCHHHHHHhcCCCCCCEEEEEEecCCCCC
Confidence 99999999999999999999998776555666678999999999887777788999999999999999999998754334
Q ss_pred cccEEEECCcCCCCcccceEEEeccCcceeEEEEeeEEEcCeEeEeecCCeeEEEccCccCcccCHHHHHHHHHHhCCCc
Q 018462 230 VGGEIIFGGFDWRHFRGSHIYVPITEKGYWQIKVGDILIENSSTGFCEDGCTAILDSGTSVLAGPTTVVAQINHAIGAEG 309 (355)
Q Consensus 230 ~~G~l~~Gg~d~~~~~g~l~~~p~~~~~~w~v~~~~i~vg~~~~~~~~~~~~aiiDTGt~~i~lP~~~~~~i~~~i~~~~ 309 (355)
..|+|+|||+|+++|.|+++|+|+...+||.|.+++++|+++.+..+.....++|||||+++++|++++++|.
T Consensus 161 ~~G~l~fGg~d~~~~~g~l~~~pv~~~~~w~v~l~~i~v~g~~~~~~~~~~~aivDTGTs~~~lP~~~~~~i~------- 233 (317)
T cd06098 161 EGGELVFGGVDPKHFKGEHTYVPVTRKGYWQFEMGDVLIGGKSTGFCAGGCAAIADSGTSLLAGPTTIVTQIN------- 233 (317)
T ss_pred CCcEEEECccChhhcccceEEEecCcCcEEEEEeCeEEECCEEeeecCCCcEEEEecCCcceeCCHHHHHhhh-------
Confidence 4899999999999999999999999889999999999999988766666788999999999999999887765
Q ss_pred eEEEeCCc------eecccCCEEEEEecCCcCccccccccCceEeC
Q 018462 310 IVSMQCKT------VVFEYGNMIWEFLISGVQPETVCSDIGLCVYN 349 (355)
Q Consensus 310 ~~~v~C~~------i~~~fg~~~~~~~~~~~~~~~~~~~~~~C~~~ 349 (355)
|.+||+. +.|.||++.|+|+++++.-.......+.|+++
T Consensus 234 -~~~~C~~~~~~P~i~f~f~g~~~~l~~~~yi~~~~~~~~~~C~~~ 278 (317)
T cd06098 234 -SAVDCNSLSSMPNVSFTIGGKTFELTPEQYILKVGEGAAAQCISG 278 (317)
T ss_pred -ccCCccccccCCcEEEEECCEEEEEChHHeEEeecCCCCCEEece
Confidence 6789983 77899999999999998332222345689764
No 3
>cd05490 Cathepsin_D2 Cathepsin_D2, pepsin family of proteinases. Cathepsin D is the major aspartic proteinase of the lysosomal compartment where it functions in protein catabolism. It is a member of the pepsin family of proteinases. This enzyme is distinguished from other members of the pepsin family by two features that are characteristic of lysosomal hydrolases. First, mature Cathepsin D is found predominantly in a two-chain form due to a posttranslational cleavage event. Second, it contains phosphorylated, N-linked oligosaccharides that target the enzyme to lysosomes via mannose-6-phosphate receptors. Cathepsin D preferentially attacks peptide bonds flanked by bulky hydrophobic amino acids and its pH optimum is between pH 2.8 and 4.0. Two active site aspartic acid residues are essential for the catalytic activity of aspartic proteinases. Like other aspartic proteinases, Cathepsin D is a bilobed molecule; the two evolutionary related lobes are mostly made up of beta-sheets and flank
Probab=100.00 E-value=3.2e-54 Score=403.31 Aligned_cols=275 Identities=42% Similarity=0.832 Sum_probs=241.5
Q ss_pred ecCCceEEEEEEEcCCCcEEEEEEeCCCCceeEeCCCCCC-CcccCCCCcccCCCCcceeecCceEEEEeCCccEEEeEE
Q 018462 74 NYLDAQYYGEIGIGSPPQSFSVVFDTGSSNLWVPSSKCLF-SISCYLHSRYRARLSRTYTKIGVPCKIHYGSGQISGFFS 152 (355)
Q Consensus 74 ~~~~~~y~~~i~iGtP~q~~~v~~DTGS~~~wv~~~~C~~-~~~C~~~~~y~~~~Sst~~~~~~~~~~~Y~~g~~~G~~~ 152 (355)
|+.|.+|+++|.||||||+|.|+|||||+++||++..|.. ...|..++.|+|++|+||+..++.+.+.|++|++.|.++
T Consensus 1 ~~~~~~Y~~~i~iGtP~q~~~v~~DTGSs~~Wv~~~~C~~~~~~C~~~~~y~~~~SsT~~~~~~~~~i~Yg~G~~~G~~~ 80 (325)
T cd05490 1 NYMDAQYYGEIGIGTPPQTFTVVFDTGSSNLWVPSVHCSLLDIACWLHHKYNSSKSSTYVKNGTEFAIQYGSGSLSGYLS 80 (325)
T ss_pred CCcCCEEEEEEEECCCCcEEEEEEeCCCccEEEEcCCCCCCCccccCcCcCCcccCcceeeCCcEEEEEECCcEEEEEEe
Confidence 4678999999999999999999999999999999999963 247888999999999999999999999999999999999
Q ss_pred EeeeeeeeeeecCcEEEEEEecCCccccccccceeeccccccccCCCCCchhHHHHHcCCCCccEEEEEecCCCCCCccc
Q 018462 153 QDNVKIGDMIIKDQEFVEVTKEGLLPFLALQFDGILGLGFRDIAAGNATPLWYNMVRQGHISQKIFSLWLNQDPNSEVGG 232 (355)
Q Consensus 153 ~D~v~ig~~~~~~~~fg~~~~~~~~~~~~~~~~GilGLg~~~~s~~~~~~~~~~l~~~g~i~~~~fs~~l~~~~~~~~~G 232 (355)
+|+|+||+..++++.||++....+..+....++||||||++..+.....|++++|++||+|++++||+||.+..+....|
T Consensus 81 ~D~v~~g~~~~~~~~Fg~~~~~~~~~~~~~~~dGilGLg~~~~s~~~~~~~~~~l~~~g~i~~~~FS~~L~~~~~~~~~G 160 (325)
T cd05490 81 QDTVSIGGLQVEGQLFGEAVKQPGITFIAAKFDGILGMAYPRISVDGVTPVFDNIMAQKLVEQNVFSFYLNRDPDAQPGG 160 (325)
T ss_pred eeEEEECCEEEcCEEEEEEeeccCCcccceeeeEEEecCCccccccCCCCHHHHHHhcCCCCCCEEEEEEeCCCCCCCCC
Confidence 99999999999999999998766544555678999999999888777789999999999999999999998754333479
Q ss_pred EEEECCcCCCCcccceEEEeccCcceeEEEEeeEEEcCeEeEeecCCeeEEEccCccCcccCHHHHHHHHHHhCCC----
Q 018462 233 EIIFGGFDWRHFRGSHIYVPITEKGYWQIKVGDILIENSSTGFCEDGCTAILDSGTSVLAGPTTVVAQINHAIGAE---- 308 (355)
Q Consensus 233 ~l~~Gg~d~~~~~g~l~~~p~~~~~~w~v~~~~i~vg~~~~~~~~~~~~aiiDTGt~~i~lP~~~~~~i~~~i~~~---- 308 (355)
+|+|||+|+++|.|++.|+|+.+..+|.|++++|+||+... .+.....++|||||+++++|.+++++|.+++++.
T Consensus 161 ~l~~Gg~d~~~~~g~l~~~~~~~~~~w~v~l~~i~vg~~~~-~~~~~~~aiiDSGTt~~~~p~~~~~~l~~~~~~~~~~~ 239 (325)
T cd05490 161 ELMLGGTDPKYYTGDLHYVNVTRKAYWQIHMDQVDVGSGLT-LCKGGCEAIVDTGTSLITGPVEEVRALQKAIGAVPLIQ 239 (325)
T ss_pred EEEECccCHHHcCCceEEEEcCcceEEEEEeeEEEECCeee-ecCCCCEEEECCCCccccCCHHHHHHHHHHhCCccccC
Confidence 99999999999999999999998899999999999998743 2445678999999999999999999999999754
Q ss_pred ceEEEeCCc------eecccCCEEEEEecCCcCccccccccCceEeC
Q 018462 309 GIVSMQCKT------VVFEYGNMIWEFLISGVQPETVCSDIGLCVYN 349 (355)
Q Consensus 309 ~~~~v~C~~------i~~~fg~~~~~~~~~~~~~~~~~~~~~~C~~~ 349 (355)
+.|.++|+. +.|.||++.|+|+++++.-.....+.+.|+++
T Consensus 240 ~~~~~~C~~~~~~P~i~f~fgg~~~~l~~~~y~~~~~~~~~~~C~~~ 286 (325)
T cd05490 240 GEYMIDCEKIPTLPVISFSLGGKVYPLTGEDYILKVSQRGTTICLSG 286 (325)
T ss_pred CCEEecccccccCCCEEEEECCEEEEEChHHeEEeccCCCCCEEeeE
Confidence 779999983 67899999999999998332222345679764
No 4
>cd05486 Cathespin_E Cathepsin E, non-lysosomal aspartic protease. Cathepsin E is an intracellular, non-lysosomal aspartic protease expressed in a variety of cells and tissues. The protease has proposed physiological roles in antigen presentation by the MHC class II system, in the biogenesis of the vasoconstrictor peptide endothelin, and in neurodegeneration associated with brain ischemia and aging. Cathepsin E is the only A1 aspartic protease that exists as a homodimer with a disulfide bridge linking the two monomers. Like many other aspartic proteases, it is synthesized as a zymogen which is catalytically inactive towards its natural substrates at neutral pH and which auto-activates in an acidic environment. The overall structure follows the general fold of aspartic proteases of the A1 family, it is composed of two structurally similar beta barrel lobes, each lobe contributing an aspartic acid residue to form a catalytic dyad that acts to cleave the substrate peptide bond. The catalyt
Probab=100.00 E-value=4.5e-54 Score=400.71 Aligned_cols=268 Identities=39% Similarity=0.771 Sum_probs=238.8
Q ss_pred EEEEEEEcCCCcEEEEEEeCCCCceeEeCCCCCCCcccCCCCcccCCCCcceeecCceEEEEeCCccEEEeEEEeeeeee
Q 018462 80 YYGEIGIGSPPQSFSVVFDTGSSNLWVPSSKCLFSISCYLHSRYRARLSRTYTKIGVPCKIHYGSGQISGFFSQDNVKIG 159 (355)
Q Consensus 80 y~~~i~iGtP~q~~~v~~DTGS~~~wv~~~~C~~~~~C~~~~~y~~~~Sst~~~~~~~~~~~Y~~g~~~G~~~~D~v~ig 159 (355)
|+++|+||||||+++|+|||||+++||++..|. ...|..++.|+|++|+||+..++.+.+.|++|++.|.+++|+|+|+
T Consensus 1 Y~~~i~iGtP~Q~~~v~~DTGSs~~Wv~s~~C~-~~~C~~~~~y~~~~SsT~~~~~~~~~i~Yg~g~~~G~~~~D~v~ig 79 (316)
T cd05486 1 YFGQISIGTPPQNFTVIFDTGSSNLWVPSIYCT-SQACTKHNRFQPSESSTYVSNGEAFSIQYGTGSLTGIIGIDQVTVE 79 (316)
T ss_pred CeEEEEECCCCcEEEEEEcCCCccEEEecCCCC-CcccCccceECCCCCcccccCCcEEEEEeCCcEEEEEeeecEEEEC
Confidence 789999999999999999999999999999997 5579989999999999999999999999999999999999999999
Q ss_pred eeeecCcEEEEEEecCCccccccccceeeccccccccCCCCCchhHHHHHcCCCCccEEEEEecCCCCCCcccEEEECCc
Q 018462 160 DMIIKDQEFVEVTKEGLLPFLALQFDGILGLGFRDIAAGNATPLWYNMVRQGHISQKIFSLWLNQDPNSEVGGEIIFGGF 239 (355)
Q Consensus 160 ~~~~~~~~fg~~~~~~~~~~~~~~~~GilGLg~~~~s~~~~~~~~~~l~~~g~i~~~~fs~~l~~~~~~~~~G~l~~Gg~ 239 (355)
+..++++.||++....+..+....++||||||++..+.....|++++|++||+|++++||+||.+.++....|+|+|||+
T Consensus 80 ~~~~~~~~fg~~~~~~~~~~~~~~~dGilGLg~~~~s~~~~~p~~~~l~~qg~i~~~~FS~~L~~~~~~~~~g~l~fGg~ 159 (316)
T cd05486 80 GITVQNQQFAESVSEPGSTFQDSEFDGILGLAYPSLAVDGVTPVFDNMMAQNLVELPMFSVYMSRNPNSADGGELVFGGF 159 (316)
T ss_pred CEEEcCEEEEEeeccCcccccccccceEeccCchhhccCCCCCHHHHHHhcCCCCCCEEEEEEccCCCCCCCcEEEEccc
Confidence 99999999999877655445556789999999998887778889999999999999999999997644445799999999
Q ss_pred CCCCcccceEEEeccCcceeEEEEeeEEEcCeEeEeecCCeeEEEccCccCcccCHHHHHHHHHHhCCC---ceEEEeCC
Q 018462 240 DWRHFRGSHIYVPITEKGYWQIKVGDILIENSSTGFCEDGCTAILDSGTSVLAGPTTVVAQINHAIGAE---GIVSMQCK 316 (355)
Q Consensus 240 d~~~~~g~l~~~p~~~~~~w~v~~~~i~vg~~~~~~~~~~~~aiiDTGt~~i~lP~~~~~~i~~~i~~~---~~~~v~C~ 316 (355)
|+++|.|++.|+|+...++|.|.+++|+|+++.+. +..+..++|||||+++++|++++++|.+.+++. +.|.+||+
T Consensus 160 d~~~~~g~l~~~pi~~~~~w~v~l~~i~v~g~~~~-~~~~~~aiiDTGTs~~~lP~~~~~~l~~~~~~~~~~~~~~~~C~ 238 (316)
T cd05486 160 DTSRFSGQLNWVPVTVQGYWQIQLDNIQVGGTVIF-CSDGCQAIVDTGTSLITGPSGDIKQLQNYIGATATDGEYGVDCS 238 (316)
T ss_pred CHHHcccceEEEECCCceEEEEEeeEEEEecceEe-cCCCCEEEECCCcchhhcCHHHHHHHHHHhCCcccCCcEEEecc
Confidence 99999999999999999999999999999998763 345678999999999999999999999999875 77999998
Q ss_pred c------eecccCCEEEEEecCCcCccccccccCceEeC
Q 018462 317 T------VVFEYGNMIWEFLISGVQPETVCSDIGLCVYN 349 (355)
Q Consensus 317 ~------i~~~fg~~~~~~~~~~~~~~~~~~~~~~C~~~ 349 (355)
. +.|.|+++.|+|++.++.......+.+.|+++
T Consensus 239 ~~~~~p~i~f~f~g~~~~l~~~~y~~~~~~~~~~~C~~~ 277 (316)
T cd05486 239 TLSLMPSVTFTINGIPYSLSPQAYTLEDQSDGGGYCSSG 277 (316)
T ss_pred ccccCCCEEEEECCEEEEeCHHHeEEecccCCCCEEeeE
Confidence 3 78899999999999998433222356789864
No 5
>cd05478 pepsin_A Pepsin A, aspartic protease produced in gastric mucosa of mammals. Pepsin, a well-known aspartic protease, is produced by the human gastric mucosa in seven different zymogen isoforms, subdivided into two types: pepsinogen A and pepsinogen C. The prosequence of the zymogens are self cleaved under acidic pH. The mature enzymes are called pepsin A and pepsin C, correspondingly. The well researched porcine pepsin is also in this pepsin A family. Pepsins play an integral role in the digestion process of vertebrates. Pepsins are bilobal enzymes, each lobe contributing a catalytic Asp residue, with an extended active site cleft localized between the two lobes of the molecule. One lobe may be evolved from the other through ancient gene-duplication event. More recently evolved enzymes have similar three-dimensional structures, however their amino acid sequences are more divergent except for the conserved catalytic site motif. Pepsins specifically cleave bonds in peptides which
Probab=100.00 E-value=1.3e-53 Score=397.75 Aligned_cols=272 Identities=42% Similarity=0.765 Sum_probs=243.4
Q ss_pred EeceecCCceEEEEEEEcCCCcEEEEEEeCCCCceeEeCCCCCCCcccCCCCcccCCCCcceeecCceEEEEeCCccEEE
Q 018462 70 VYLNNYLDAQYYGEIGIGSPPQSFSVVFDTGSSNLWVPSSKCLFSISCYLHSRYRARLSRTYTKIGVPCKIHYGSGQISG 149 (355)
Q Consensus 70 ~~l~~~~~~~y~~~i~iGtP~q~~~v~~DTGS~~~wv~~~~C~~~~~C~~~~~y~~~~Sst~~~~~~~~~~~Y~~g~~~G 149 (355)
.||.|+.|.+|+++|.||||||++.|+|||||+++||++..|. ...|..++.|+|++|+||+..++.+.+.|++|++.|
T Consensus 1 ~~l~n~~~~~Y~~~i~vGtp~q~~~v~~DTGS~~~wv~~~~C~-~~~c~~~~~f~~~~Sst~~~~~~~~~~~yg~gs~~G 79 (317)
T cd05478 1 EPLTNYLDMEYYGTISIGTPPQDFTVIFDTGSSNLWVPSVYCS-SQACSNHNRFNPRQSSTYQSTGQPLSIQYGTGSMTG 79 (317)
T ss_pred CccccccCCEEEEEEEeCCCCcEEEEEEeCCCccEEEecCCCC-cccccccCcCCCCCCcceeeCCcEEEEEECCceEEE
Confidence 3799999999999999999999999999999999999999997 457988999999999999999999999999999999
Q ss_pred eEEEeeeeeeeeeecCcEEEEEEecCCccccccccceeeccccccccCCCCCchhHHHHHcCCCCccEEEEEecCCCCCC
Q 018462 150 FFSQDNVKIGDMIIKDQEFVEVTKEGLLPFLALQFDGILGLGFRDIAAGNATPLWYNMVRQGHISQKIFSLWLNQDPNSE 229 (355)
Q Consensus 150 ~~~~D~v~ig~~~~~~~~fg~~~~~~~~~~~~~~~~GilGLg~~~~s~~~~~~~~~~l~~~g~i~~~~fs~~l~~~~~~~ 229 (355)
.+++|+|++|+..++++.||++....+..+.....+||||||++..+..+..|++++|++||+|++++||+||.+..+
T Consensus 80 ~~~~D~v~ig~~~i~~~~fg~~~~~~~~~~~~~~~dGilGLg~~~~s~~~~~~~~~~L~~~g~i~~~~FS~~L~~~~~-- 157 (317)
T cd05478 80 ILGYDTVQVGGISDTNQIFGLSETEPGSFFYYAPFDGILGLAYPSIASSGATPVFDNMMSQGLVSQDLFSVYLSSNGQ-- 157 (317)
T ss_pred EEeeeEEEECCEEECCEEEEEEEecCccccccccccceeeeccchhcccCCCCHHHHHHhCCCCCCCEEEEEeCCCCC--
Confidence 999999999999999999999987654333334579999999998877777889999999999999999999998642
Q ss_pred cccEEEECCcCCCCcccceEEEeccCcceeEEEEeeEEEcCeEeEeecCCeeEEEccCccCcccCHHHHHHHHHHhCCC-
Q 018462 230 VGGEIIFGGFDWRHFRGSHIYVPITEKGYWQIKVGDILIENSSTGFCEDGCTAILDSGTSVLAGPTTVVAQINHAIGAE- 308 (355)
Q Consensus 230 ~~G~l~~Gg~d~~~~~g~l~~~p~~~~~~w~v~~~~i~vg~~~~~~~~~~~~aiiDTGt~~i~lP~~~~~~i~~~i~~~- 308 (355)
..|+|+|||+|+++|.|+++|+|+....+|.|.++++.|+++.+. ...+..++|||||+++++|++++++|.+++++.
T Consensus 158 ~~g~l~~Gg~d~~~~~g~l~~~p~~~~~~w~v~l~~v~v~g~~~~-~~~~~~~iiDTGts~~~lp~~~~~~l~~~~~~~~ 236 (317)
T cd05478 158 QGSVVTFGGIDPSYYTGSLNWVPVTAETYWQITVDSVTINGQVVA-CSGGCQAIVDTGTSLLVGPSSDIANIQSDIGASQ 236 (317)
T ss_pred CCeEEEEcccCHHHccCceEEEECCCCcEEEEEeeEEEECCEEEc-cCCCCEEEECCCchhhhCCHHHHHHHHHHhCCcc
Confidence 379999999999999999999999988999999999999999874 344568999999999999999999999999874
Q ss_pred ---ceEEEeCCc------eecccCCEEEEEecCCcCccccccccCceEeC
Q 018462 309 ---GIVSMQCKT------VVFEYGNMIWEFLISGVQPETVCSDIGLCVYN 349 (355)
Q Consensus 309 ---~~~~v~C~~------i~~~fg~~~~~~~~~~~~~~~~~~~~~~C~~~ 349 (355)
+.|.+||+. +.|.|+++.|+||++++... ..+.|++.
T Consensus 237 ~~~~~~~~~C~~~~~~P~~~f~f~g~~~~i~~~~y~~~----~~~~C~~~ 282 (317)
T cd05478 237 NQNGEMVVNCSSISSMPDVVFTINGVQYPLPPSAYILQ----DQGSCTSG 282 (317)
T ss_pred ccCCcEEeCCcCcccCCcEEEEECCEEEEECHHHheec----CCCEEeEE
Confidence 779999983 67899999999999998432 26789864
No 6
>cd05485 Cathepsin_D_like Cathepsin_D_like, pepsin family of proteinases. Cathepsin D is the major aspartic proteinase of the lysosomal compartment where it functions in protein catabolism. It is a member of the pepsin family of proteinases. This enzyme is distinguished from other members of the pepsin family by two features that are characteristic of lysosomal hydrolases. First, mature Cathepsin D is found predominantly in a two-chain form due to a posttranslational cleavage event. Second, it contains phosphorylated, N-linked oligosaccharides that target the enzyme to lysosomes via mannose-6-phosphate receptors. Cathepsin D preferentially attacks peptide bonds flanked by bulky hydrophobic amino acids and its pH optimum is between pH 2.8 and 4.0. Two active site aspartic acid residues are essential for the catalytic activity of aspartic proteinases. Like other aspartic proteinases, Cathepsin D is a bilobed molecule; the two evolutionary related lobes are mostly made up of beta-sheets an
Probab=100.00 E-value=1.7e-53 Score=398.60 Aligned_cols=278 Identities=44% Similarity=0.856 Sum_probs=246.4
Q ss_pred EeceecCCceEEEEEEEcCCCcEEEEEEeCCCCceeEeCCCCCCC-cccCCCCcccCCCCcceeecCceEEEEeCCccEE
Q 018462 70 VYLNNYLDAQYYGEIGIGSPPQSFSVVFDTGSSNLWVPSSKCLFS-ISCYLHSRYRARLSRTYTKIGVPCKIHYGSGQIS 148 (355)
Q Consensus 70 ~~l~~~~~~~y~~~i~iGtP~q~~~v~~DTGS~~~wv~~~~C~~~-~~C~~~~~y~~~~Sst~~~~~~~~~~~Y~~g~~~ 148 (355)
.+|.|+.|.+|+++|+||||+|++.|++||||+++||++..|..+ ..|..++.|+|++|+|++..++.|.+.|++|+++
T Consensus 2 ~~~~n~~~~~Y~~~i~vGtP~q~~~v~~DTGSs~~Wv~~~~C~~~~~~c~~~~~y~~~~Sst~~~~~~~~~i~Y~~g~~~ 81 (329)
T cd05485 2 EPLSNYMDAQYYGVITIGTPPQSFKVVFDTGSSNLWVPSKKCSWTNIACLLHNKYDSTKSSTYKKNGTEFAIQYGSGSLS 81 (329)
T ss_pred ccceeccCCeEEEEEEECCCCcEEEEEEcCCCccEEEecCCCCCCCccccCCCeECCcCCCCeEECCeEEEEEECCceEE
Confidence 478999999999999999999999999999999999999999632 3688888999999999999999999999999999
Q ss_pred EeEEEeeeeeeeeeecCcEEEEEEecCCccccccccceeeccccccccCCCCCchhHHHHHcCCCCccEEEEEecCCCCC
Q 018462 149 GFFSQDNVKIGDMIIKDQEFVEVTKEGLLPFLALQFDGILGLGFRDIAAGNATPLWYNMVRQGHISQKIFSLWLNQDPNS 228 (355)
Q Consensus 149 G~~~~D~v~ig~~~~~~~~fg~~~~~~~~~~~~~~~~GilGLg~~~~s~~~~~~~~~~l~~~g~i~~~~fs~~l~~~~~~ 228 (355)
|.+++|+|+|++..++++.||++....+..+.....+||||||++..+.....|++.+|++||+|++++||+||.+..+.
T Consensus 82 G~~~~D~v~ig~~~~~~~~fg~~~~~~~~~~~~~~~~GilGLg~~~~s~~~~~p~~~~l~~qg~i~~~~FS~~l~~~~~~ 161 (329)
T cd05485 82 GFLSTDTVSVGGVSVKGQTFAEAINEPGLTFVAAKFDGILGMGYSSISVDGVVPVFYNMVNQKLVDAPVFSFYLNRDPSA 161 (329)
T ss_pred EEEecCcEEECCEEECCEEEEEEEecCCccccccccceEEEcCCccccccCCCCHHHHHHhCCCCCCCEEEEEecCCCCC
Confidence 99999999999999999999999876654455567899999999988777778899999999999999999999876543
Q ss_pred CcccEEEECCcCCCCcccceEEEeccCcceeEEEEeeEEEcCeEeEeecCCeeEEEccCccCcccCHHHHHHHHHHhCCC
Q 018462 229 EVGGEIIFGGFDWRHFRGSHIYVPITEKGYWQIKVGDILIENSSTGFCEDGCTAILDSGTSVLAGPTTVVAQINHAIGAE 308 (355)
Q Consensus 229 ~~~G~l~~Gg~d~~~~~g~l~~~p~~~~~~w~v~~~~i~vg~~~~~~~~~~~~aiiDTGt~~i~lP~~~~~~i~~~i~~~ 308 (355)
...|+|+|||+|+++|.|+++|+|+...++|.|.++++.++++.+ +..+..++|||||+++++|++++++|.+++++.
T Consensus 162 ~~~G~l~fGg~d~~~~~g~l~~~p~~~~~~~~v~~~~i~v~~~~~--~~~~~~~iiDSGtt~~~lP~~~~~~l~~~~~~~ 239 (329)
T cd05485 162 KEGGELILGGSDPKHYTGNFTYLPVTRKGYWQFKMDSVSVGEGEF--CSGGCQAIADTGTSLIAGPVDEIEKLNNAIGAK 239 (329)
T ss_pred CCCcEEEEcccCHHHcccceEEEEcCCceEEEEEeeEEEECCeee--cCCCcEEEEccCCcceeCCHHHHHHHHHHhCCc
Confidence 347999999999999999999999998999999999999999876 355678999999999999999999999999875
Q ss_pred ----ceEEEeCCc------eecccCCEEEEEecCCcCccccccccCceEeC
Q 018462 309 ----GIVSMQCKT------VVFEYGNMIWEFLISGVQPETVCSDIGLCVYN 349 (355)
Q Consensus 309 ----~~~~v~C~~------i~~~fg~~~~~~~~~~~~~~~~~~~~~~C~~~ 349 (355)
+.|.+||+. +.|.||++.|+|+++++.-.....+.+.|+++
T Consensus 240 ~~~~~~~~~~C~~~~~~p~i~f~fgg~~~~i~~~~yi~~~~~~~~~~C~~~ 290 (329)
T cd05485 240 PIIGGEYMVNCSAIPSLPDITFVLGGKSFSLTGKDYVLKVTQMGQTICLSG 290 (329)
T ss_pred cccCCcEEEeccccccCCcEEEEECCEEeEEChHHeEEEecCCCCCEEeee
Confidence 678999983 77899999999999998333223456789864
No 7
>cd05487 renin_like Renin stimulates production of angiotensin and thus affects blood pressure. Renin, also known as angiotensinogenase, is a circulating enzyme that participates in the renin-angiotensin system that mediates extracellular volume, arterial vasoconstriction, and consequently mean arterial blood pressure. The enzyme is secreted by the kidneys from specialized juxtaglomerular cells in response to decreases in glomerular filtration rate (a consequence of low blood volume), diminished filtered sodium chloride and sympathetic nervous system innervation. The enzyme circulates in the blood stream and hydrolyzes angiotensinogen secreted from the liver into the peptide angiotensin I. Angiotensin I is further cleaved in the lungs by endothelial bound angiotensin converting enzyme (ACE) into angiotensin II, the final active peptide. Renin is a member of the aspartic protease family. Structurally, aspartic proteases are bilobal enzymes, each lobe contributing a catalytic Aspartate r
Probab=100.00 E-value=2.2e-53 Score=397.57 Aligned_cols=276 Identities=42% Similarity=0.807 Sum_probs=243.3
Q ss_pred ceecCCceEEEEEEEcCCCcEEEEEEeCCCCceeEeCCCCCCC-cccCCCCcccCCCCcceeecCceEEEEeCCccEEEe
Q 018462 72 LNNYLDAQYYGEIGIGSPPQSFSVVFDTGSSNLWVPSSKCLFS-ISCYLHSRYRARLSRTYTKIGVPCKIHYGSGQISGF 150 (355)
Q Consensus 72 l~~~~~~~y~~~i~iGtP~q~~~v~~DTGS~~~wv~~~~C~~~-~~C~~~~~y~~~~Sst~~~~~~~~~~~Y~~g~~~G~ 150 (355)
|.|+.|.+|+++|+||||+|+++|+|||||+++||++..|..+ ..|..++.|+|++|+||+..++.+.+.|++|+++|.
T Consensus 1 ~~~~~~~~y~~~i~iGtP~q~~~v~~DTGSs~~Wv~~~~C~~~~~~c~~~~~y~~~~SsT~~~~~~~~~~~Yg~g~~~G~ 80 (326)
T cd05487 1 LTNYLDTQYYGEIGIGTPPQTFKVVFDTGSSNLWVPSSKCSPLYTACVTHNLYDASDSSTYKENGTEFTIHYASGTVKGF 80 (326)
T ss_pred CcccCCCeEEEEEEECCCCcEEEEEEeCCccceEEccCCCcCcchhhcccCcCCCCCCeeeeECCEEEEEEeCCceEEEE
Confidence 5688899999999999999999999999999999999999742 478889999999999999999999999999999999
Q ss_pred EEEeeeeeeeeeecCcEEEEEEecCCccccccccceeeccccccccCCCCCchhHHHHHcCCCCccEEEEEecCCCCCCc
Q 018462 151 FSQDNVKIGDMIIKDQEFVEVTKEGLLPFLALQFDGILGLGFRDIAAGNATPLWYNMVRQGHISQKIFSLWLNQDPNSEV 230 (355)
Q Consensus 151 ~~~D~v~ig~~~~~~~~fg~~~~~~~~~~~~~~~~GilGLg~~~~s~~~~~~~~~~l~~~g~i~~~~fs~~l~~~~~~~~ 230 (355)
+++|+|++++..++ +.||++.......+....++||||||++..+.....|++++|++||+|++++||+||.+..+...
T Consensus 81 ~~~D~v~~g~~~~~-~~fg~~~~~~~~~~~~~~~dGilGLg~~~~s~~~~~~~~~~L~~qg~i~~~~FS~~L~~~~~~~~ 159 (326)
T cd05487 81 LSQDIVTVGGIPVT-QMFGEVTALPAIPFMLAKFDGVLGMGYPKQAIGGVTPVFDNIMSQGVLKEDVFSVYYSRDSSHSL 159 (326)
T ss_pred EeeeEEEECCEEee-EEEEEEEeccCCccceeecceEEecCChhhcccCCCCHHHHHHhcCCCCCCEEEEEEeCCCCCCC
Confidence 99999999998885 88999987654445556789999999988777677899999999999999999999987643344
Q ss_pred ccEEEECCcCCCCcccceEEEeccCcceeEEEEeeEEEcCeEeEeecCCeeEEEccCccCcccCHHHHHHHHHHhCCC--
Q 018462 231 GGEIIFGGFDWRHFRGSHIYVPITEKGYWQIKVGDILIENSSTGFCEDGCTAILDSGTSVLAGPTTVVAQINHAIGAE-- 308 (355)
Q Consensus 231 ~G~l~~Gg~d~~~~~g~l~~~p~~~~~~w~v~~~~i~vg~~~~~~~~~~~~aiiDTGt~~i~lP~~~~~~i~~~i~~~-- 308 (355)
.|+|+|||+|+++|.|+++|+|+...++|+|++++++++++.+. +..+..++|||||+++++|++++++|++++++.
T Consensus 160 ~G~l~fGg~d~~~y~g~l~~~~~~~~~~w~v~l~~i~vg~~~~~-~~~~~~aiiDSGts~~~lP~~~~~~l~~~~~~~~~ 238 (326)
T cd05487 160 GGEIVLGGSDPQHYQGDFHYINTSKTGFWQIQMKGVSVGSSTLL-CEDGCTAVVDTGASFISGPTSSISKLMEALGAKER 238 (326)
T ss_pred CcEEEECCcChhhccCceEEEECCcCceEEEEecEEEECCEEEe-cCCCCEEEECCCccchhCcHHHHHHHHHHhCCccc
Confidence 89999999999999999999999989999999999999998763 345678999999999999999999999999875
Q ss_pred -ceEEEeCCc------eecccCCEEEEEecCCcCccccccccCceEeC
Q 018462 309 -GIVSMQCKT------VVFEYGNMIWEFLISGVQPETVCSDIGLCVYN 349 (355)
Q Consensus 309 -~~~~v~C~~------i~~~fg~~~~~~~~~~~~~~~~~~~~~~C~~~ 349 (355)
+.|.+||+. +.|.||++.|+|+++++.-.......+.|+++
T Consensus 239 ~~~y~~~C~~~~~~P~i~f~fgg~~~~v~~~~yi~~~~~~~~~~C~~~ 286 (326)
T cd05487 239 LGDYVVKCNEVPTLPDISFHLGGKEYTLSSSDYVLQDSDFSDKLCTVA 286 (326)
T ss_pred CCCEEEeccccCCCCCEEEEECCEEEEeCHHHhEEeccCCCCCEEEEE
Confidence 779999994 67899999999999998433233356789864
No 8
>cd05477 gastricsin Gastricsins, asparate proteases produced in gastric mucosa. Gastricsin is also called pepsinogen C. Gastricsins are produced in gastric mucosa of mammals. It is synthesized by the chief cells in the stomach as an inactive zymogen. It is self-converted to a mature enzyme under acidic conditions. Human gastricsin is distributed throughout all parts of the stomach. Gastricsin is synthesized as an inactive progastricsin that has an approximately 40 residue prosequence. It is self-converting to a mature enzyme being triggered by a drop in pH from neutrality to acidic conditions. Like other aspartic proteases, gastricsin are characterized by two catalytic aspartic residues at the active site, and display optimal activity at acidic pH. Mature enzyme has a pseudo-2-fold symmetry that passes through the active site between the catalytic aspartate residues. Structurally, aspartic proteases are bilobal enzymes, each lobe contributing a catalytic aspartate residue, with an exten
Probab=100.00 E-value=1.1e-52 Score=391.84 Aligned_cols=268 Identities=39% Similarity=0.752 Sum_probs=240.4
Q ss_pred CceEEEEEEEcCCCcEEEEEEeCCCCceeEeCCCCCCCcccCCCCcccCCCCcceeecCceEEEEeCCccEEEeEEEeee
Q 018462 77 DAQYYGEIGIGSPPQSFSVVFDTGSSNLWVPSSKCLFSISCYLHSRYRARLSRTYTKIGVPCKIHYGSGQISGFFSQDNV 156 (355)
Q Consensus 77 ~~~y~~~i~iGtP~q~~~v~~DTGS~~~wv~~~~C~~~~~C~~~~~y~~~~Sst~~~~~~~~~~~Y~~g~~~G~~~~D~v 156 (355)
|..|+++|+||||||++.|+|||||+++||++..|. ...|..++.|+|++|+||+..++.+.+.|++|++.|.+++|+|
T Consensus 1 ~~~y~~~i~iGtP~q~~~v~~DTGS~~~wv~~~~C~-~~~C~~~~~f~~~~SsT~~~~~~~~~~~Yg~Gs~~G~~~~D~i 79 (318)
T cd05477 1 DMSYYGEISIGTPPQNFLVLFDTGSSNLWVPSVLCQ-SQACTNHTKFNPSQSSTYSTNGETFSLQYGSGSLTGIFGYDTV 79 (318)
T ss_pred CcEEEEEEEECCCCcEEEEEEeCCCccEEEccCCCC-CccccccCCCCcccCCCceECCcEEEEEECCcEEEEEEEeeEE
Confidence 568999999999999999999999999999999997 4579999999999999999999999999999999999999999
Q ss_pred eeeeeeecCcEEEEEEecCCccccccccceeeccccccccCCCCCchhHHHHHcCCCCccEEEEEecCCCCCCcccEEEE
Q 018462 157 KIGDMIIKDQEFVEVTKEGLLPFLALQFDGILGLGFRDIAAGNATPLWYNMVRQGHISQKIFSLWLNQDPNSEVGGEIIF 236 (355)
Q Consensus 157 ~ig~~~~~~~~fg~~~~~~~~~~~~~~~~GilGLg~~~~s~~~~~~~~~~l~~~g~i~~~~fs~~l~~~~~~~~~G~l~~ 236 (355)
++|+..++++.||++....+..+.....+||||||++..+.....+++++|+++|.|++++||+||.+.. ....|+|+|
T Consensus 80 ~~g~~~i~~~~Fg~~~~~~~~~~~~~~~~GilGLg~~~~s~~~~~~~~~~L~~~g~i~~~~FS~~L~~~~-~~~~g~l~f 158 (318)
T cd05477 80 TVQGIIITNQEFGLSETEPGTNFVYAQFDGILGLAYPSISAGGATTVMQGMMQQNLLQAPIFSFYLSGQQ-GQQGGELVF 158 (318)
T ss_pred EECCEEEcCEEEEEEEecccccccccceeeEeecCcccccccCCCCHHHHHHhcCCcCCCEEEEEEcCCC-CCCCCEEEE
Confidence 9999999999999998765544444567999999999888777789999999999999999999998753 223799999
Q ss_pred CCcCCCCcccceEEEeccCcceeEEEEeeEEEcCeEeEeecCCeeEEEccCccCcccCHHHHHHHHHHhCCC----ceEE
Q 018462 237 GGFDWRHFRGSHIYVPITEKGYWQIKVGDILIENSSTGFCEDGCTAILDSGTSVLAGPTTVVAQINHAIGAE----GIVS 312 (355)
Q Consensus 237 Gg~d~~~~~g~l~~~p~~~~~~w~v~~~~i~vg~~~~~~~~~~~~aiiDTGt~~i~lP~~~~~~i~~~i~~~----~~~~ 312 (355)
||+|++++.|+++|+|+.+.++|.|+++++.|+++....+..+..++|||||+++++|++++++|++.+++. +.|.
T Consensus 159 Gg~d~~~~~g~l~~~pv~~~~~w~v~l~~i~v~g~~~~~~~~~~~~iiDSGtt~~~lP~~~~~~l~~~~~~~~~~~~~~~ 238 (318)
T cd05477 159 GGVDNNLYTGQIYWTPVTSETYWQIGIQGFQINGQATGWCSQGCQAIVDTGTSLLTAPQQVMSTLMQSIGAQQDQYGQYV 238 (318)
T ss_pred cccCHHHcCCceEEEecCCceEEEEEeeEEEECCEEecccCCCceeeECCCCccEECCHHHHHHHHHHhCCccccCCCEE
Confidence 999999999999999999999999999999999988755556678999999999999999999999999875 7899
Q ss_pred EeCCc------eecccCCEEEEEecCCcCccccccccCceEeCC
Q 018462 313 MQCKT------VVFEYGNMIWEFLISGVQPETVCSDIGLCVYNG 350 (355)
Q Consensus 313 v~C~~------i~~~fg~~~~~~~~~~~~~~~~~~~~~~C~~~~ 350 (355)
+||+. +.+.|++++|++|++++... ..+.|+++.
T Consensus 239 ~~C~~~~~~p~l~~~f~g~~~~v~~~~y~~~----~~~~C~~~i 278 (318)
T cd05477 239 VNCNNIQNLPTLTFTINGVSFPLPPSAYILQ----NNGYCTVGI 278 (318)
T ss_pred EeCCccccCCcEEEEECCEEEEECHHHeEec----CCCeEEEEE
Confidence 99984 77899999999999998333 267898764
No 9
>cd05488 Proteinase_A_fungi Fungal Proteinase A , aspartic proteinase superfamily. Fungal Proteinase A, a proteolytic enzyme distributed among a variety of organisms, is a member of the aspartic proteinase superfamily. In Saccharomyces cerevisiae, targeted to the vacuole as a zymogen, activation of proteinases A at acidic pH can occur by two different pathways: a one-step process to release mature proteinase A, involving the intervention of proteinase B, or a step-wise pathway via the auto-activation product known as pseudo-proteinase A. Once active, S. cerevisiae proteinase A is essential to the activities of other yeast vacuolar hydrolases, including proteinase B and carboxypeptidase Y. The mature enzyme is bilobal, with each lobe providing one of the two catalytically essential aspartic acid residues in the active site. The crystal structure of free proteinase A shows that flap loop is atypically pointing directly into the S(1) pocket of the enzyme. Proteinase A preferentially hydro
Probab=100.00 E-value=9.4e-53 Score=392.38 Aligned_cols=271 Identities=41% Similarity=0.768 Sum_probs=243.0
Q ss_pred EeceecCCceEEEEEEEcCCCcEEEEEEeCCCCceeEeCCCCCCCcccCCCCcccCCCCcceeecCceEEEEeCCccEEE
Q 018462 70 VYLNNYLDAQYYGEIGIGSPPQSFSVVFDTGSSNLWVPSSKCLFSISCYLHSRYRARLSRTYTKIGVPCKIHYGSGQISG 149 (355)
Q Consensus 70 ~~l~~~~~~~y~~~i~iGtP~q~~~v~~DTGS~~~wv~~~~C~~~~~C~~~~~y~~~~Sst~~~~~~~~~~~Y~~g~~~G 149 (355)
+||.|+.|..|+++|+||||+|++.|+|||||+++||++..|. ...|..++.|+|++|+||+..++.+.+.|++|+++|
T Consensus 1 ~~l~n~~~~~Y~~~i~iGtp~q~~~v~~DTGSs~~wv~~~~C~-~~~C~~~~~y~~~~Sst~~~~~~~~~~~y~~g~~~G 79 (320)
T cd05488 1 VPLTNYLNAQYFTDITLGTPPQKFKVILDTGSSNLWVPSVKCG-SIACFLHSKYDSSASSTYKANGTEFKIQYGSGSLEG 79 (320)
T ss_pred CcccccCCCEEEEEEEECCCCcEEEEEEecCCcceEEEcCCCC-CcccCCcceECCCCCcceeeCCCEEEEEECCceEEE
Confidence 4789999999999999999999999999999999999999997 557998899999999999999999999999999999
Q ss_pred eEEEeeeeeeeeeecCcEEEEEEecCCccccccccceeeccccccccCCCCCchhHHHHHcCCCCccEEEEEecCCCCCC
Q 018462 150 FFSQDNVKIGDMIIKDQEFVEVTKEGLLPFLALQFDGILGLGFRDIAAGNATPLWYNMVRQGHISQKIFSLWLNQDPNSE 229 (355)
Q Consensus 150 ~~~~D~v~ig~~~~~~~~fg~~~~~~~~~~~~~~~~GilGLg~~~~s~~~~~~~~~~l~~~g~i~~~~fs~~l~~~~~~~ 229 (355)
.+++|+|++++..++++.|+++....+..+.....+||||||++..+.....|.+.+|++||+|++++||+||.+.. .
T Consensus 80 ~~~~D~v~ig~~~~~~~~f~~a~~~~g~~~~~~~~dGilGLg~~~~s~~~~~~~~~~l~~qg~i~~~~FS~~L~~~~--~ 157 (320)
T cd05488 80 FVSQDTLSIGDLTIKKQDFAEATSEPGLAFAFGKFDGILGLAYDTISVNKIVPPFYNMINQGLLDEPVFSFYLGSSE--E 157 (320)
T ss_pred EEEEeEEEECCEEECCEEEEEEecCCCcceeeeeeceEEecCCccccccCCCCHHHHHHhcCCCCCCEEEEEecCCC--C
Confidence 99999999999999999999998765544555578999999999887766778889999999999999999999863 2
Q ss_pred cccEEEECCcCCCCcccceEEEeccCcceeEEEEeeEEEcCeEeEeecCCeeEEEccCccCcccCHHHHHHHHHHhCCC-
Q 018462 230 VGGEIIFGGFDWRHFRGSHIYVPITEKGYWQIKVGDILIENSSTGFCEDGCTAILDSGTSVLAGPTTVVAQINHAIGAE- 308 (355)
Q Consensus 230 ~~G~l~~Gg~d~~~~~g~l~~~p~~~~~~w~v~~~~i~vg~~~~~~~~~~~~aiiDTGt~~i~lP~~~~~~i~~~i~~~- 308 (355)
..|+|+|||+|++++.|+++|+|+...++|.|+++++++|++.+. ..+..++|||||+++++|++++++|.+++++.
T Consensus 158 ~~G~l~fGg~d~~~~~g~l~~~p~~~~~~w~v~l~~i~vg~~~~~--~~~~~~ivDSGtt~~~lp~~~~~~l~~~~~~~~ 235 (320)
T cd05488 158 DGGEATFGGIDESRFTGKITWLPVRRKAYWEVELEKIGLGDEELE--LENTGAAIDTGTSLIALPSDLAEMLNAEIGAKK 235 (320)
T ss_pred CCcEEEECCcCHHHcCCceEEEeCCcCcEEEEEeCeEEECCEEec--cCCCeEEEcCCcccccCCHHHHHHHHHHhCCcc
Confidence 379999999999999999999999988999999999999998764 34568999999999999999999999999874
Q ss_pred ---ceEEEeCCc------eecccCCEEEEEecCCcCccccccccCceEeC
Q 018462 309 ---GIVSMQCKT------VVFEYGNMIWEFLISGVQPETVCSDIGLCVYN 349 (355)
Q Consensus 309 ---~~~~v~C~~------i~~~fg~~~~~~~~~~~~~~~~~~~~~~C~~~ 349 (355)
+.|.+||+. +.|.|+++.|+||++++..+ ..+.|++.
T Consensus 236 ~~~~~~~~~C~~~~~~P~i~f~f~g~~~~i~~~~y~~~----~~g~C~~~ 281 (320)
T cd05488 236 SWNGQYTVDCSKVDSLPDLTFNFDGYNFTLGPFDYTLE----VSGSCISA 281 (320)
T ss_pred ccCCcEEeeccccccCCCEEEEECCEEEEECHHHheec----CCCeEEEE
Confidence 779999983 77899999999999998432 34679764
No 10
>PTZ00147 plasmepsin-1; Provisional
Probab=100.00 E-value=1.4e-51 Score=396.18 Aligned_cols=276 Identities=32% Similarity=0.582 Sum_probs=240.1
Q ss_pred CCceeEeceecCCceEEEEEEEcCCCcEEEEEEeCCCCceeEeCCCCCCCcccCCCCcccCCCCcceeecCceEEEEeCC
Q 018462 65 PKADVVYLNNYLDAQYYGEIGIGSPPQSFSVVFDTGSSNLWVPSSKCLFSISCYLHSRYRARLSRTYTKIGVPCKIHYGS 144 (355)
Q Consensus 65 ~~~~~~~l~~~~~~~y~~~i~iGtP~q~~~v~~DTGS~~~wv~~~~C~~~~~C~~~~~y~~~~Sst~~~~~~~~~~~Y~~ 144 (355)
.....+||.|+.|.+|+++|+||||||+|.|+|||||+++||+|..|. ...|..++.|||++|+||+..++.+.+.|++
T Consensus 125 ~~~~~v~L~n~~n~~Y~~~I~IGTP~Q~f~Vi~DTGSsdlWVps~~C~-~~~C~~~~~yd~s~SsT~~~~~~~f~i~Yg~ 203 (453)
T PTZ00147 125 SEFDNVELKDLANVMSYGEAKLGDNGQKFNFIFDTGSANLWVPSIKCT-TEGCETKNLYDSSKSKTYEKDGTKVEMNYVS 203 (453)
T ss_pred CCCCeeeccccCCCEEEEEEEECCCCeEEEEEEeCCCCcEEEeecCCC-cccccCCCccCCccCcceEECCCEEEEEeCC
Confidence 466789999999999999999999999999999999999999999997 5679999999999999999999999999999
Q ss_pred ccEEEeEEEeeeeeeeeeecCcEEEEEEecCCc--cccccccceeeccccccccCCCCCchhHHHHHcCCCCccEEEEEe
Q 018462 145 GQISGFFSQDNVKIGDMIIKDQEFVEVTKEGLL--PFLALQFDGILGLGFRDIAAGNATPLWYNMVRQGHISQKIFSLWL 222 (355)
Q Consensus 145 g~~~G~~~~D~v~ig~~~~~~~~fg~~~~~~~~--~~~~~~~~GilGLg~~~~s~~~~~~~~~~l~~~g~i~~~~fs~~l 222 (355)
|+++|.+++|+|+||+..++ ..|+++....+. .+....++||||||++..+.....|++.+|++||+|++++||+||
T Consensus 204 GsvsG~~~~DtVtiG~~~v~-~qF~~~~~~~~f~~~~~~~~~DGILGLG~~~~S~~~~~p~~~~L~~qg~I~~~vFS~~L 282 (453)
T PTZ00147 204 GTVSGFFSKDLVTIGNLSVP-YKFIEVTDTNGFEPFYTESDFDGIFGLGWKDLSIGSVDPYVVELKNQNKIEQAVFTFYL 282 (453)
T ss_pred CCEEEEEEEEEEEECCEEEE-EEEEEEEeccCcccccccccccceecccCCccccccCCCHHHHHHHcCCCCccEEEEEe
Confidence 99999999999999999998 568887665432 233456899999999988777778999999999999999999999
Q ss_pred cCCCCCCcccEEEECCcCCCCcccceEEEeccCcceeEEEEeeEEEcCeEeEeecCCeeEEEccCccCcccCHHHHHHHH
Q 018462 223 NQDPNSEVGGEIIFGGFDWRHFRGSHIYVPITEKGYWQIKVGDILIENSSTGFCEDGCTAILDSGTSVLAGPTTVVAQIN 302 (355)
Q Consensus 223 ~~~~~~~~~G~l~~Gg~d~~~~~g~l~~~p~~~~~~w~v~~~~i~vg~~~~~~~~~~~~aiiDTGt~~i~lP~~~~~~i~ 302 (355)
.+... ..|+|+|||+|+++|.|++.|+|+.+..+|.|.++ +.+++.. .....|+|||||+++++|+++++++.
T Consensus 283 ~~~~~--~~G~L~fGGiD~~ky~G~l~y~pl~~~~~W~V~l~-~~vg~~~----~~~~~aIiDSGTsli~lP~~~~~ai~ 355 (453)
T PTZ00147 283 PPEDK--HKGYLTIGGIEERFYEGPLTYEKLNHDLYWQVDLD-VHFGNVS----SEKANVIVDSGTSVITVPTEFLNKFV 355 (453)
T ss_pred cCCCC--CCeEEEECCcChhhcCCceEEEEcCCCceEEEEEE-EEECCEe----cCceeEEECCCCchhcCCHHHHHHHH
Confidence 87532 37999999999999999999999998899999998 5777643 34578999999999999999999999
Q ss_pred HHhCCC-----ceEEEeCC-----ceecccCCEEEEEecCCcCccccccccCceEeC
Q 018462 303 HAIGAE-----GIVSMQCK-----TVVFEYGNMIWEFLISGVQPETVCSDIGLCVYN 349 (355)
Q Consensus 303 ~~i~~~-----~~~~v~C~-----~i~~~fg~~~~~~~~~~~~~~~~~~~~~~C~~~ 349 (355)
+++++. +.|.++|+ ++.|.|++..++|+++++.-.......+.|+++
T Consensus 356 ~~l~~~~~~~~~~y~~~C~~~~lP~~~f~f~g~~~~L~p~~yi~~~~~~~~~~C~~~ 412 (453)
T PTZ00147 356 ESLDVFKVPFLPLYVTTCNNTKLPTLEFRSPNKVYTLEPEYYLQPIEDIGSALCMLN 412 (453)
T ss_pred HHhCCeecCCCCeEEEeCCCCCCCeEEEEECCEEEEECHHHheeccccCCCcEEEEE
Confidence 999753 66889998 377889999999999998432223356789864
No 11
>PTZ00013 plasmepsin 4 (PM4); Provisional
Probab=100.00 E-value=1.4e-50 Score=388.33 Aligned_cols=279 Identities=30% Similarity=0.575 Sum_probs=239.1
Q ss_pred CCCCceeEeceecCCceEEEEEEEcCCCcEEEEEEeCCCCceeEeCCCCCCCcccCCCCcccCCCCcceeecCceEEEEe
Q 018462 63 NHPKADVVYLNNYLDAQYYGEIGIGSPPQSFSVVFDTGSSNLWVPSSKCLFSISCYLHSRYRARLSRTYTKIGVPCKIHY 142 (355)
Q Consensus 63 ~~~~~~~~~l~~~~~~~y~~~i~iGtP~q~~~v~~DTGS~~~wv~~~~C~~~~~C~~~~~y~~~~Sst~~~~~~~~~~~Y 142 (355)
.+.....++|.|+.+.+|+++|+||||||+|.|+|||||+++||++..|. ...|..++.|+|++|+||+..++.+.+.|
T Consensus 122 ~~~~~~~~~l~d~~n~~Yy~~i~IGTP~Q~f~vi~DTGSsdlWV~s~~C~-~~~C~~~~~yd~s~SsT~~~~~~~~~i~Y 200 (450)
T PTZ00013 122 LGSENDVIELDDVANIMFYGEGEVGDNHQKFMLIFDTGSANLWVPSKKCD-SIGCSIKNLYDSSKSKSYEKDGTKVDITY 200 (450)
T ss_pred cccCCCceeeeccCCCEEEEEEEECCCCeEEEEEEeCCCCceEEecccCC-ccccccCCCccCccCcccccCCcEEEEEE
Confidence 34567789999999999999999999999999999999999999999997 56799999999999999999999999999
Q ss_pred CCccEEEeEEEeeeeeeeeeecCcEEEEEEecCC--ccccccccceeeccccccccCCCCCchhHHHHHcCCCCccEEEE
Q 018462 143 GSGQISGFFSQDNVKIGDMIIKDQEFVEVTKEGL--LPFLALQFDGILGLGFRDIAAGNATPLWYNMVRQGHISQKIFSL 220 (355)
Q Consensus 143 ~~g~~~G~~~~D~v~ig~~~~~~~~fg~~~~~~~--~~~~~~~~~GilGLg~~~~s~~~~~~~~~~l~~~g~i~~~~fs~ 220 (355)
++|++.|.+++|+|++|+..++ ..|+++..... ..+....++||||||++..+.....|++++|++||+|++++||+
T Consensus 201 G~Gsv~G~~~~Dtv~iG~~~~~-~~f~~~~~~~~~~~~~~~~~~dGIlGLg~~~~s~~~~~p~~~~L~~qg~I~~~vFS~ 279 (450)
T PTZ00013 201 GSGTVKGFFSKDLVTLGHLSMP-YKFIEVTDTDDLEPIYSSSEFDGILGLGWKDLSIGSIDPIVVELKNQNKIDNALFTF 279 (450)
T ss_pred CCceEEEEEEEEEEEECCEEEc-cEEEEEEeccccccceecccccceecccCCccccccCCCHHHHHHhccCcCCcEEEE
Confidence 9999999999999999999987 56777765432 12344568999999999887777789999999999999999999
Q ss_pred EecCCCCCCcccEEEECCcCCCCcccceEEEeccCcceeEEEEeeEEEcCeEeEeecCCeeEEEccCccCcccCHHHHHH
Q 018462 221 WLNQDPNSEVGGEIIFGGFDWRHFRGSHIYVPITEKGYWQIKVGDILIENSSTGFCEDGCTAILDSGTSVLAGPTTVVAQ 300 (355)
Q Consensus 221 ~l~~~~~~~~~G~l~~Gg~d~~~~~g~l~~~p~~~~~~w~v~~~~i~vg~~~~~~~~~~~~aiiDTGt~~i~lP~~~~~~ 300 (355)
||.+.. ...|+|+|||+|+++|.|+++|+|+....+|.|.++ +.+|.... ....|+|||||+++++|++++++
T Consensus 280 ~L~~~~--~~~G~L~fGGiD~~~y~G~L~y~pv~~~~yW~I~l~-v~~G~~~~----~~~~aIlDSGTSli~lP~~~~~~ 352 (450)
T PTZ00013 280 YLPVHD--VHAGYLTIGGIEEKFYEGNITYEKLNHDLYWQIDLD-VHFGKQTM----QKANVIVDSGTTTITAPSEFLNK 352 (450)
T ss_pred EecCCC--CCCCEEEECCcCccccccceEEEEcCcCceEEEEEE-EEECceec----cccceEECCCCccccCCHHHHHH
Confidence 998653 237999999999999999999999998899999998 66765432 34679999999999999999999
Q ss_pred HHHHhCCC-----ceEEEeCC-----ceecccCCEEEEEecCCcCccccccccCceEeCC
Q 018462 301 INHAIGAE-----GIVSMQCK-----TVVFEYGNMIWEFLISGVQPETVCSDIGLCVYNG 350 (355)
Q Consensus 301 i~~~i~~~-----~~~~v~C~-----~i~~~fg~~~~~~~~~~~~~~~~~~~~~~C~~~~ 350 (355)
+.+++++. +.|.++|+ .+.|.|++..++|++.++.-.....+.+.|++..
T Consensus 353 i~~~l~~~~~~~~~~y~~~C~~~~lP~i~F~~~g~~~~L~p~~Yi~~~~~~~~~~C~~~i 412 (450)
T PTZ00013 353 FFANLNVIKVPFLPFYVTTCDNKEMPTLEFKSANNTYTLEPEYYMNPLLDVDDTLCMITM 412 (450)
T ss_pred HHHHhCCeecCCCCeEEeecCCCCCCeEEEEECCEEEEECHHHheehhccCCCCeeEEEE
Confidence 99999764 67889997 3778899999999998873211123457898653
No 12
>PF00026 Asp: Eukaryotic aspartyl protease The Prosite entry also includes Pfam:PF00077.; InterPro: IPR001461 In the MEROPS database peptidases and peptidase homologues are grouped into clans and families. Clans are groups of families for which there is evidence of common ancestry based on a common structural fold: Each clan is identified with two letters, the first representing the catalytic type of the families included in the clan (with the letter 'P' being used for a clan containing families of more than one of the catalytic types serine, threonine and cysteine). Some families cannot yet be assigned to clans, and when a formal assignment is required, such a family is described as belonging to clan A-, C-, M-, N-, S-, T- or U-, according to the catalytic type. Some clans are divided into subclans because there is evidence of a very ancient divergence within the clan, for example MA(E), the gluzincins, and MA(M), the metzincins. Peptidase families are grouped by their catalytic type, the first character representing the catalytic type: A, aspartic; C, cysteine; G, glutamic acid; M, metallo; N, asparagine; S, serine; T, threonine; and U, unknown. The serine, threonine and cysteine peptidases utilise the amino acid as a nucleophile and form an acyl intermediate - these peptidases can also readily act as transferases. In the case of aspartic, glutamic and metallopeptidases, the nucleophile is an activated water molecule. In the case of the asparagine endopeptidases, the nucleophile is asparagine and all are self-processing endopeptidases. In many instances the structural protein fold that characterises the clan or family may have lost its catalytic activity, yet retain its function in protein recognition and binding. Aspartic endopeptidases 3.4.23. from EC of vertebrate, fungal and retroviral origin have been characterised []. More recently, aspartic endopeptidases associated with the processing of bacterial type 4 prepilin [] and archaean preflagellin have been described [, ]. Structurally, aspartic endopeptidases are bilobal enzymes, each lobe contributing a catalytic Asp residue, with an extended active site cleft localised between the two lobes of the molecule. One lobe has probably evolved from the other through a gene duplication event in the distant past. In modern-day enzymes, although the three-dimensional structures are very similar, the amino acid sequences are more divergent, except for the catalytic site motif, which is very conserved. The presence and position of disulphide bridges are other conserved features of aspartic peptidases. All or most aspartate peptidases are endopeptidases. These enzymes have been assigned into clans (proteins which are evolutionary related), and further sub-divided into families, largely on the basis of their tertiary structure. This group of aspartic peptidases belong to MEROPS peptidase family A1 (pepsin family, clan AA). The type example is pepsin A from Homo sapiens (Human) . More than 70 aspartic peptidases, from all from eukaryotic organisms, have been identified. These include pepsins, cathepsins, and renins. The enzymes are synthesised with signal peptides, and the proenzymes are secreted or passed into the lysosomal/endosomal system, where acidification leads to autocatalytic activation. Most members of the pepsin family specifically cleave bonds in peptides that are at least six residues in length, with hydrophobic residues in both the P1 and P1' positions []. Crystallography has shown the active site to form a groove across the junction of the two lobes, with an extended loop projecting over the cleft to form an 11-residue flap, which encloses substrates and inhibitors within the active site []. Specificity is determined by several hydrophobic residues surrounding the catalytic aspartates, and by three residues in the flap. Cysteine residues are well conserved within the pepsin family, pepsin itself containing three disulphide loops. The first loop is found in all but the fungal enzymes, and is usually around five residues in length, but is longer in barrierpepsin and candidapepsin; the second loop is also small and found only in the animal enzymes; and the third loop is the largest, found in all members of the family, except for the cysteine-free polyporopepsin. The loops are spread unequally throughout the two lobes, suggesting that they formed after the initial gene duplication and fusion event []. This family does not include the retroviral nor retrotransposon aspartic proteases which are much smaller and appear to be homologous to the single domain aspartic proteases.; GO: 0004190 aspartic-type endopeptidase activity, 0006508 proteolysis; PDB: 1CZI_E 3CMS_A 1CMS_A 4CMS_A 1YG9_A 2NR6_A 3LIZ_A 1FLH_A 3UTL_A 1QRP_E ....
Probab=100.00 E-value=4.9e-48 Score=360.18 Aligned_cols=271 Identities=36% Similarity=0.666 Sum_probs=238.3
Q ss_pred eEEEEEEEcCCCcEEEEEEeCCCCceeEeCCCCCCCcccCCCCcccCCCCcceeecCceEEEEeCCccEEEeEEEeeeee
Q 018462 79 QYYGEIGIGSPPQSFSVVFDTGSSNLWVPSSKCLFSISCYLHSRYRARLSRTYTKIGVPCKIHYGSGQISGFFSQDNVKI 158 (355)
Q Consensus 79 ~y~~~i~iGtP~q~~~v~~DTGS~~~wv~~~~C~~~~~C~~~~~y~~~~Sst~~~~~~~~~~~Y~~g~~~G~~~~D~v~i 158 (355)
+|+++|+||||+|+++|++||||+++||++..|..+..|..+..|++++|+|++..++.+.+.|++|+++|.+++|+|+|
T Consensus 1 ~Y~~~v~iGtp~q~~~~~iDTGS~~~wv~~~~c~~~~~~~~~~~y~~~~S~t~~~~~~~~~~~y~~g~~~G~~~~D~v~i 80 (317)
T PF00026_consen 1 QYYINVTIGTPPQTFRVLIDTGSSDTWVPSSNCNSCSSCASSGFYNPSKSSTFSNQGKPFSISYGDGSVSGNLVSDTVSI 80 (317)
T ss_dssp EEEEEEEETTTTEEEEEEEETTBSSEEEEBTTECSHTHHCTSC-BBGGGSTTEEEEEEEEEEEETTEEEEEEEEEEEEEE
T ss_pred CeEEEEEECCCCeEEEEEEecccceeeeceeccccccccccccccccccccccccceeeeeeeccCcccccccccceEee
Confidence 59999999999999999999999999999999984446788899999999999999999999999999999999999999
Q ss_pred eeeeecCcEEEEEEecCCccccccccceeeccccccccCCC-CCchhHHHHHcCCCCccEEEEEecCCCCCCcccEEEEC
Q 018462 159 GDMIIKDQEFVEVTKEGLLPFLALQFDGILGLGFRDIAAGN-ATPLWYNMVRQGHISQKIFSLWLNQDPNSEVGGEIIFG 237 (355)
Q Consensus 159 g~~~~~~~~fg~~~~~~~~~~~~~~~~GilGLg~~~~s~~~-~~~~~~~l~~~g~i~~~~fs~~l~~~~~~~~~G~l~~G 237 (355)
++..++++.|+++....+..+....++||||||++..+... ..+++++|+++|+|++++||++|++.. ...|+|+||
T Consensus 81 g~~~~~~~~f~~~~~~~~~~~~~~~~~GilGLg~~~~~~~~~~~~~~~~l~~~g~i~~~~fsl~l~~~~--~~~g~l~~G 158 (317)
T PF00026_consen 81 GGLTIPNQTFGLADSYSGDPFSPIPFDGILGLGFPSLSSSSTYPTFLDQLVQQGLISSNVFSLYLNPSD--SQNGSLTFG 158 (317)
T ss_dssp TTEEEEEEEEEEEEEEESHHHHHSSSSEEEE-SSGGGSGGGTS-SHHHHHHHTTSSSSSEEEEEEESTT--SSEEEEEES
T ss_pred eeccccccceeccccccccccccccccccccccCCcccccccCCcceecchhhccccccccceeeeecc--cccchheee
Confidence 99999999999999876555567788999999988776554 678999999999999999999999875 347999999
Q ss_pred CcCCCCcccceEEEeccCcceeEEEEeeEEEcCeEeEeecCCeeEEEccCccCcccCHHHHHHHHHHhCCC---ceEEEe
Q 018462 238 GFDWRHFRGSHIYVPITEKGYWQIKVGDILIENSSTGFCEDGCTAILDSGTSVLAGPTTVVAQINHAIGAE---GIVSMQ 314 (355)
Q Consensus 238 g~d~~~~~g~l~~~p~~~~~~w~v~~~~i~vg~~~~~~~~~~~~aiiDTGt~~i~lP~~~~~~i~~~i~~~---~~~~v~ 314 (355)
|+|+++|+|+++|+|+...++|.+.+++|.+++... .......++||||++++++|.++++.|++++++. +.|.+|
T Consensus 159 g~d~~~~~g~~~~~~~~~~~~w~v~~~~i~i~~~~~-~~~~~~~~~~Dtgt~~i~lp~~~~~~i~~~l~~~~~~~~~~~~ 237 (317)
T PF00026_consen 159 GYDPSKYDGDLVWVPLVSSGYWSVPLDSISIGGESV-FSSSGQQAILDTGTSYIYLPRSIFDAIIKALGGSYSDGVYSVP 237 (317)
T ss_dssp SEEGGGEESEEEEEEBSSTTTTEEEEEEEEETTEEE-EEEEEEEEEEETTBSSEEEEHHHHHHHHHHHTTEEECSEEEEE
T ss_pred ccccccccCceeccCccccccccccccccccccccc-ccccceeeecccccccccccchhhHHHHhhhcccccceeEEEe
Confidence 999999999999999999999999999999999832 2455578999999999999999999999999886 789999
Q ss_pred CCc------eecccCCEEEEEecCCcCccccccccCceEeCCcc
Q 018462 315 CKT------VVFEYGNMIWEFLISGVQPETVCSDIGLCVYNGSS 352 (355)
Q Consensus 315 C~~------i~~~fg~~~~~~~~~~~~~~~~~~~~~~C~~~~~~ 352 (355)
|+. +.+.|++.+|++|++++.........+.|++....
T Consensus 238 c~~~~~~p~l~f~~~~~~~~i~~~~~~~~~~~~~~~~C~~~i~~ 281 (317)
T PF00026_consen 238 CNSTDSLPDLTFTFGGVTFTIPPSDYIFKIEDGNGGYCYLGIQP 281 (317)
T ss_dssp TTGGGGSEEEEEEETTEEEEEEHHHHEEEESSTTSSEEEESEEE
T ss_pred cccccccceEEEeeCCEEEEecchHhcccccccccceeEeeeec
Confidence 994 57899999999999998444343444589986554
No 13
>cd06097 Aspergillopepsin_like Aspergillopepsin_like, aspartic proteases of fungal origin. The members of this family are aspartic proteases of fungal origin, including aspergillopepsin, rhizopuspepsin, endothiapepsin, and rodosporapepsin. The various fungal species in this family may be the most economically important genus of fungi. They may serve as virulence factors or as industrial aids. For example, Aspergillopepsin from A. fumigatus is involved in invasive aspergillosis owing to its elastolytic activity and Aspergillopepsins from the mold A. saitoi are used in fermentation industry. Aspartic proteinases are a group of proteolytic enzymes in which the scissile peptide bond is attacked by a nucleophilic water molecule activated by two aspartic residues in a DT(S)G motif at the active site. They have a similar fold composed of two beta-barrel domains. Between the N-terminal and C-terminal domains, each of which contributes one catalytic aspartic residue, there is an extended active-
Probab=100.00 E-value=4.3e-46 Score=340.95 Aligned_cols=239 Identities=28% Similarity=0.450 Sum_probs=206.4
Q ss_pred EEEEEEEcCCCcEEEEEEeCCCCceeEeCCCCCCCcccCCCCcccCCCCcceee-cCceEEEEeCCcc-EEEeEEEeeee
Q 018462 80 YYGEIGIGSPPQSFSVVFDTGSSNLWVPSSKCLFSISCYLHSRYRARLSRTYTK-IGVPCKIHYGSGQ-ISGFFSQDNVK 157 (355)
Q Consensus 80 y~~~i~iGtP~q~~~v~~DTGS~~~wv~~~~C~~~~~C~~~~~y~~~~Sst~~~-~~~~~~~~Y~~g~-~~G~~~~D~v~ 157 (355)
|+++|+||||||++.|+|||||+++||+++.|. ...|..++.|++++|+|++. .++.+.+.|++|+ +.|.+++|+|+
T Consensus 1 Y~~~i~vGtP~Q~~~v~~DTGS~~~wv~~~~c~-~~~~~~~~~y~~~~Sst~~~~~~~~~~i~Y~~G~~~~G~~~~D~v~ 79 (278)
T cd06097 1 YLTPVKIGTPPQTLNLDLDTGSSDLWVFSSETP-AAQQGGHKLYDPSKSSTAKLLPGATWSISYGDGSSASGIVYTDTVS 79 (278)
T ss_pred CeeeEEECCCCcEEEEEEeCCCCceeEeeCCCC-chhhccCCcCCCccCccceecCCcEEEEEeCCCCeEEEEEEEEEEE
Confidence 789999999999999999999999999999997 33456677899999999987 4689999999997 89999999999
Q ss_pred eeeeeecCcEEEEEEecCCccccccccceeeccccccccCC---CCCchhHHHHHcCCCCccEEEEEecCCCCCCcccEE
Q 018462 158 IGDMIIKDQEFVEVTKEGLLPFLALQFDGILGLGFRDIAAG---NATPLWYNMVRQGHISQKIFSLWLNQDPNSEVGGEI 234 (355)
Q Consensus 158 ig~~~~~~~~fg~~~~~~~~~~~~~~~~GilGLg~~~~s~~---~~~~~~~~l~~~g~i~~~~fs~~l~~~~~~~~~G~l 234 (355)
|++..++++.||++.......+....++||||||++..+.. ...+++++|.+++. +++||+||.+. ..|+|
T Consensus 80 ig~~~~~~~~fg~~~~~~~~~~~~~~~dGilGLg~~~~~~~~~~~~~~~~~~l~~~~~--~~~Fs~~l~~~----~~G~l 153 (278)
T cd06097 80 IGGVEVPNQAIELATAVSASFFSDTASDGLLGLAFSSINTVQPPKQKTFFENALSSLD--APLFTADLRKA----APGFY 153 (278)
T ss_pred ECCEEECCeEEEEEeecCccccccccccceeeeccccccccccCCCCCHHHHHHHhcc--CceEEEEecCC----CCcEE
Confidence 99999999999999876553455567899999999876542 34678999999965 89999999863 27999
Q ss_pred EECCcCCCCcccceEEEeccC-cceeEEEEeeEEEcCeEeEeecCCeeEEEccCccCcccCHHHHHHHHHHh-CCC----
Q 018462 235 IFGGFDWRHFRGSHIYVPITE-KGYWQIKVGDILIENSSTGFCEDGCTAILDSGTSVLAGPTTVVAQINHAI-GAE---- 308 (355)
Q Consensus 235 ~~Gg~d~~~~~g~l~~~p~~~-~~~w~v~~~~i~vg~~~~~~~~~~~~aiiDTGt~~i~lP~~~~~~i~~~i-~~~---- 308 (355)
+|||+|+++|.|+++|+|+.. .++|.|+++++.|+++... ......++|||||+++++|++++++|.+++ ++.
T Consensus 154 ~fGg~D~~~~~g~l~~~pi~~~~~~w~v~l~~i~v~~~~~~-~~~~~~~iiDSGTs~~~lP~~~~~~l~~~l~g~~~~~~ 232 (278)
T cd06097 154 TFGYIDESKYKGEISWTPVDNSSGFWQFTSTSYTVGGDAPW-SRSGFSAIADTGTTLILLPDAIVEAYYSQVPGAYYDSE 232 (278)
T ss_pred EEeccChHHcCCceEEEEccCCCcEEEEEEeeEEECCccee-ecCCceEEeecCCchhcCCHHHHHHHHHhCcCCcccCC
Confidence 999999999999999999987 7899999999999997432 356788999999999999999999999999 443
Q ss_pred -ceEEEeCCceecccCCEEEEE
Q 018462 309 -GIVSMQCKTVVFEYGNMIWEF 329 (355)
Q Consensus 309 -~~~~v~C~~i~~~fg~~~~~~ 329 (355)
+.|.+||++. +...+|.+
T Consensus 233 ~~~~~~~C~~~---~P~i~f~~ 251 (278)
T cd06097 233 YGGWVFPCDTT---LPDLSFAV 251 (278)
T ss_pred CCEEEEECCCC---CCCEEEEE
Confidence 7799999963 55555555
No 14
>KOG1339 consensus Aspartyl protease [Posttranslational modification, protein turnover, chaperones]
Probab=100.00 E-value=6.6e-44 Score=341.57 Aligned_cols=258 Identities=37% Similarity=0.683 Sum_probs=216.8
Q ss_pred ceeEeceecCCceEEEEEEEcCCCcEEEEEEeCCCCceeEeCCCCCCCcccCC-CCc-ccCCCCcceeecCce-------
Q 018462 67 ADVVYLNNYLDAQYYGEIGIGSPPQSFSVVFDTGSSNLWVPSSKCLFSISCYL-HSR-YRARLSRTYTKIGVP------- 137 (355)
Q Consensus 67 ~~~~~l~~~~~~~y~~~i~iGtP~q~~~v~~DTGS~~~wv~~~~C~~~~~C~~-~~~-y~~~~Sst~~~~~~~------- 137 (355)
....++..+.+++|+++|+||||||+|.|++||||+++||+|..|.. .|.. +.. |+|++|+||+...|.
T Consensus 34 ~~~~~~~~~~~~~Y~~~i~IGTPpq~f~v~~DTGS~~lWV~c~~c~~--~C~~~~~~~f~p~~SSt~~~~~c~~~~c~~~ 111 (398)
T KOG1339|consen 34 PLPESLSSYSSGEYYGNISIGTPPQSFTVVLDTGSDLLWVPCAPCSS--ACYSQHNPIFDPSASSTYKSVGCSSPRCKSL 111 (398)
T ss_pred ccccccccccccccEEEEecCCCCeeeEEEEeCCCCceeeccccccc--cccccCCCccCccccccccccCCCCcccccc
Confidence 34466777788999999999999999999999999999999999963 6764 445 999999999997743
Q ss_pred -----------EEEEeCCcc-EEEeEEEeeeeeee---eeecCcEEEEEEecCCccccc-cccceeeccccccccCCCCC
Q 018462 138 -----------CKIHYGSGQ-ISGFFSQDNVKIGD---MIIKDQEFVEVTKEGLLPFLA-LQFDGILGLGFRDIAAGNAT 201 (355)
Q Consensus 138 -----------~~~~Y~~g~-~~G~~~~D~v~ig~---~~~~~~~fg~~~~~~~~~~~~-~~~~GilGLg~~~~s~~~~~ 201 (355)
|.+.|++|+ ++|.+++|+|++++ ..++++.|||+....+. +.. .+++||||||+...+.....
T Consensus 112 ~~~~~~~~~C~y~i~Ygd~~~~~G~l~~Dtv~~~~~~~~~~~~~~FGc~~~~~g~-~~~~~~~dGIlGLg~~~~S~~~q~ 190 (398)
T KOG1339|consen 112 PQSCSPNSSCPYSIQYGDGSSTSGYLATDTVTFGGTTSLPVPNQTFGCGTNNPGS-FGLFAAFDGILGLGRGSLSVPSQL 190 (398)
T ss_pred ccCcccCCcCceEEEeCCCCceeEEEEEEEEEEccccccccccEEEEeeecCccc-cccccccceEeecCCCCccceeec
Confidence 999999955 89999999999998 77888999999988765 444 67899999999999854443
Q ss_pred chhHHHHHcCCCCccEEEEEecCCCCC-CcccEEEECCcCCCCcccceEEEeccCcc--eeEEEEeeEEEcCeE----eE
Q 018462 202 PLWYNMVRQGHISQKIFSLWLNQDPNS-EVGGEIIFGGFDWRHFRGSHIYVPITEKG--YWQIKVGDILIENSS----TG 274 (355)
Q Consensus 202 ~~~~~l~~~g~i~~~~fs~~l~~~~~~-~~~G~l~~Gg~d~~~~~g~l~~~p~~~~~--~w~v~~~~i~vg~~~----~~ 274 (355)
+.+.++ .++||+||.+.... ...|.|+||++|+.++.++++|+|+.... ||.|.+.+|.|+++. ..
T Consensus 191 ~~~~~~-------~~~FS~cL~~~~~~~~~~G~i~fG~~d~~~~~~~l~~tPl~~~~~~~y~v~l~~I~vgg~~~~~~~~ 263 (398)
T KOG1339|consen 191 PSFYNA-------INVFSYCLSSNGSPSSGGGSIIFGGVDSSHYTGSLTYTPLLSNPSTYYQVNLDGISVGGKRPIGSSL 263 (398)
T ss_pred ccccCC-------ceeEEEEeCCCCCCCCCCcEEEECCCcccCcCCceEEEeeccCCCccEEEEEeEEEECCccCCCcce
Confidence 332222 23899999987533 24899999999999999999999998877 999999999999832 22
Q ss_pred eecCCeeEEEccCccCcccCHHHHHHHHHHhCC----C---ceEEEeCCc----------eecccC-CEEEEEecCCc
Q 018462 275 FCEDGCTAILDSGTSVLAGPTTVVAQINHAIGA----E---GIVSMQCKT----------VVFEYG-NMIWEFLISGV 334 (355)
Q Consensus 275 ~~~~~~~aiiDTGt~~i~lP~~~~~~i~~~i~~----~---~~~~v~C~~----------i~~~fg-~~~~~~~~~~~ 334 (355)
++.+...+++||||++++||.++|++|.+++++ . +.|.++|.. +.+.|+ ++.|.++++++
T Consensus 264 ~~~~~~~~iiDSGTs~t~lp~~~y~~i~~~~~~~~~~~~~~~~~~~~C~~~~~~~~~~P~i~~~f~~g~~~~l~~~~y 341 (398)
T KOG1339|consen 264 FCTDGGGAIIDSGTSLTYLPTSAYNALREAIGAEVSVVGTDGEYFVPCFSISTSGVKLPDITFHFGGGAVFSLPPKNY 341 (398)
T ss_pred EecCCCCEEEECCcceeeccHHHHHHHHHHHHhheeccccCCceeeecccCCCCcccCCcEEEEECCCcEEEeCccce
Confidence 334468899999999999999999999999987 3 678899983 667888 89999999998
No 15
>cd05473 beta_secretase_like Beta-secretase, aspartic-acid protease important in the pathogenesis of Alzheimer's disease. Beta-secretase also called BACE (beta-site of APP cleaving enzyme) or memapsin-2. Beta-secretase is an aspartic-acid protease important in the pathogenesis of Alzheimer's disease, and in the formation of myelin sheaths in peripheral nerve cells. It cleaves amyloid precursor protein (APP) to reveal the N-terminus of the beta-amyloid peptides. The beta-amyloid peptides are the major components of the amyloid plaques formed in the brain of patients with Alzheimer's disease (AD). Since BACE mediates one of the cleavages responsible for generation of AD, it is regarded as a potential target for pharmacological intervention in AD. Beta-secretase is a member of pepsin family of aspartic proteases. Same as other aspartic proteases, beta-secretase is a bilobal enzyme, each lobe contributing a catalytic Asp residue, with an extended active site cleft localized between the two
Probab=100.00 E-value=3.5e-43 Score=333.50 Aligned_cols=262 Identities=27% Similarity=0.419 Sum_probs=205.4
Q ss_pred ceEEEEEEEcCCCcEEEEEEeCCCCceeEeCCCCCCCcccCCCCcccCCCCcceeecCceEEEEeCCccEEEeEEEeeee
Q 018462 78 AQYYGEIGIGSPPQSFSVVFDTGSSNLWVPSSKCLFSISCYLHSRYRARLSRTYTKIGVPCKIHYGSGQISGFFSQDNVK 157 (355)
Q Consensus 78 ~~y~~~i~iGtP~q~~~v~~DTGS~~~wv~~~~C~~~~~C~~~~~y~~~~Sst~~~~~~~~~~~Y~~g~~~G~~~~D~v~ 157 (355)
..|+++|.||||+|+|.|+|||||+++||++..|. ..++.|+|++|+||+..++.+.++|++|++.|.+++|+|+
T Consensus 2 ~~Y~~~i~iGtP~Q~~~v~~DTGSs~lWv~~~~~~-----~~~~~f~~~~SsT~~~~~~~~~i~Yg~Gs~~G~~~~D~v~ 76 (364)
T cd05473 2 QGYYIEMLIGTPPQKLNILVDTGSSNFAVAAAPHP-----FIHTYFHRELSSTYRDLGKGVTVPYTQGSWEGELGTDLVS 76 (364)
T ss_pred CceEEEEEecCCCceEEEEEecCCcceEEEcCCCc-----cccccCCchhCcCcccCCceEEEEECcceEEEEEEEEEEE
Confidence 47999999999999999999999999999998773 3467999999999999999999999999999999999999
Q ss_pred eeeeeecCcEE----EEEEecCCccccccccceeeccccccccC--CCCCchhHHHHHcCCCCccEEEEEecCCC-----
Q 018462 158 IGDMIIKDQEF----VEVTKEGLLPFLALQFDGILGLGFRDIAA--GNATPLWYNMVRQGHISQKIFSLWLNQDP----- 226 (355)
Q Consensus 158 ig~~~~~~~~f----g~~~~~~~~~~~~~~~~GilGLg~~~~s~--~~~~~~~~~l~~~g~i~~~~fs~~l~~~~----- 226 (355)
|++. .++.| +++............++||||||++.++. ....|++++|++|+.+ .++||+||+...
T Consensus 77 ig~~--~~~~~~~~~~~~~~~~~~~~~~~~~dGIlGLg~~~l~~~~~~~~~~~~~l~~q~~~-~~~FS~~l~~~~~~~~~ 153 (364)
T cd05473 77 IPKG--PNVTFRANIAAITESENFFLNGSNWEGILGLAYAELARPDSSVEPFFDSLVKQTGI-PDVFSLQMCGAGLPVNG 153 (364)
T ss_pred ECCC--CccceEEeeEEEeccccceecccccceeeeecccccccCCCCCCCHHHHHHhccCC-ccceEEEeccccccccc
Confidence 9863 23333 34433222111223679999999988764 2357899999999997 579999986421
Q ss_pred --CCCcccEEEECCcCCCCcccceEEEeccCcceeEEEEeeEEEcCeEeEeecC---CeeEEEccCccCcccCHHHHHHH
Q 018462 227 --NSEVGGEIIFGGFDWRHFRGSHIYVPITEKGYWQIKVGDILIENSSTGFCED---GCTAILDSGTSVLAGPTTVVAQI 301 (355)
Q Consensus 227 --~~~~~G~l~~Gg~d~~~~~g~l~~~p~~~~~~w~v~~~~i~vg~~~~~~~~~---~~~aiiDTGt~~i~lP~~~~~~i 301 (355)
+....|+|+|||+|+++|.|++.|+|+.+..+|.|.+++|.|+++.+..... ...++|||||+++++|++++++|
T Consensus 154 ~~~~~~~g~l~fGg~D~~~~~g~l~~~p~~~~~~~~v~l~~i~vg~~~~~~~~~~~~~~~~ivDSGTs~~~lp~~~~~~l 233 (364)
T cd05473 154 SASGTVGGSMVIGGIDPSLYKGDIWYTPIREEWYYEVIILKLEVGGQSLNLDCKEYNYDKAIVDSGTTNLRLPVKVFNAA 233 (364)
T ss_pred ccccCCCcEEEeCCcCHhhcCCCceEEecCcceeEEEEEEEEEECCEecccccccccCccEEEeCCCcceeCCHHHHHHH
Confidence 1224799999999999999999999999889999999999999987753221 24699999999999999999999
Q ss_pred HHHhCCC-----------ceEEEeCCc-----------eecccCC------EEEEEecCCcCccc-cccccCceE
Q 018462 302 NHAIGAE-----------GIVSMQCKT-----------VVFEYGN------MIWEFLISGVQPET-VCSDIGLCV 347 (355)
Q Consensus 302 ~~~i~~~-----------~~~~v~C~~-----------i~~~fg~------~~~~~~~~~~~~~~-~~~~~~~C~ 347 (355)
.+++++. +.+.++|.. +.+.|++ ..++|++.++.-.. .......|+
T Consensus 234 ~~~l~~~~~~~~~~~~~~~~~~~~C~~~~~~~~~~~P~i~~~f~g~~~~~~~~l~l~p~~Y~~~~~~~~~~~~C~ 308 (364)
T cd05473 234 VDAIKAASLIEDFPDGFWLGSQLACWQKGTTPWEIFPKISIYLRDENSSQSFRITILPQLYLRPVEDHGTQLDCY 308 (364)
T ss_pred HHHHHhhcccccCCccccCcceeecccccCchHhhCCcEEEEEccCCCCceEEEEECHHHhhhhhccCCCcceee
Confidence 9999653 123579973 3456643 36788887763221 112346786
No 16
>cd06096 Plasmepsin_5 Plasmepsins are a class of aspartic proteinases produced by the plasmodium parasite. The family contains a group of aspartic proteinases homologous to plasmepsin 5. Plasmepsins are a class of at least 10 enzymes produced by the plasmodium parasite. Through their haemoglobin-degrading activity, they are an important cause of symptoms in malaria sufferers. This family of enzymes is a potential target for anti-malarial drugs. Plasmepsins are aspartic acid proteases, which means their active site contains two aspartic acid residues. These two aspartic acid residue act respectively as proton donor and proton acceptor, catalyzing the hydrolysis of peptide bond in proteins. Aspartic proteinases are composed of two structurally similar beta barrel lobes, each lobe contributing an aspartic acid residue to form a catalytic dyad that acts to cleave the substrate peptide bond. The catalytic Asp residues are contained in an Asp-Thr-Gly-Ser/thr motif in both N- and C-terminal l
Probab=100.00 E-value=8.9e-43 Score=325.93 Aligned_cols=236 Identities=30% Similarity=0.455 Sum_probs=200.3
Q ss_pred ceEEEEEEEcCCCcEEEEEEeCCCCceeEeCCCCCCCcccC--CCCcccCCCCcceeec----------------CceEE
Q 018462 78 AQYYGEIGIGSPPQSFSVVFDTGSSNLWVPSSKCLFSISCY--LHSRYRARLSRTYTKI----------------GVPCK 139 (355)
Q Consensus 78 ~~y~~~i~iGtP~q~~~v~~DTGS~~~wv~~~~C~~~~~C~--~~~~y~~~~Sst~~~~----------------~~~~~ 139 (355)
+.|+++|+||||+|++.|+|||||+++||+|..|. .|. .++.|+|++|+|++.. .+.+.
T Consensus 2 ~~Y~~~i~vGtP~Q~~~v~~DTGS~~~wv~~~~C~---~c~~~~~~~y~~~~Sst~~~~~C~~~~c~~~~~~~~~~~~~~ 78 (326)
T cd06096 2 AYYFIDIFIGNPPQKQSLILDTGSSSLSFPCSQCK---NCGIHMEPPYNLNNSITSSILYCDCNKCCYCLSCLNNKCEYS 78 (326)
T ss_pred ceEEEEEEecCCCeEEEEEEeCCCCceEEecCCCC---CcCCCCCCCcCcccccccccccCCCccccccCcCCCCcCcEE
Confidence 57999999999999999999999999999999997 454 4578999999999863 56899
Q ss_pred EEeCCcc-EEEeEEEeeeeeeeeeec-------CcEEEEEEecCCccccccccceeeccccccccCCCCCchhHHHHHcC
Q 018462 140 IHYGSGQ-ISGFFSQDNVKIGDMIIK-------DQEFVEVTKEGLLPFLALQFDGILGLGFRDIAAGNATPLWYNMVRQG 211 (355)
Q Consensus 140 ~~Y~~g~-~~G~~~~D~v~ig~~~~~-------~~~fg~~~~~~~~~~~~~~~~GilGLg~~~~s~~~~~~~~~~l~~~g 211 (355)
+.|++|+ +.|.+++|+|+|++..++ ++.|||+....+ .+.....+||||||+...+. ..+.+..|++++
T Consensus 79 i~Y~~gs~~~G~~~~D~v~lg~~~~~~~~~~~~~~~fg~~~~~~~-~~~~~~~~GilGLg~~~~~~--~~~~~~~l~~~~ 155 (326)
T cd06096 79 ISYSEGSSISGFYFSDFVSFESYLNSNSEKESFKKIFGCHTHETN-LFLTQQATGILGLSLTKNNG--LPTPIILLFTKR 155 (326)
T ss_pred EEECCCCceeeEEEEEEEEeccCCCCccccccccEEeccCccccC-cccccccceEEEccCCcccc--cCchhHHHHHhc
Confidence 9999998 799999999999987653 467999876654 34455679999999987542 223455588887
Q ss_pred CCCc--cEEEEEecCCCCCCcccEEEECCcCCCCcc----------cceEEEeccCcceeEEEEeeEEEcCeE-eEeecC
Q 018462 212 HISQ--KIFSLWLNQDPNSEVGGEIIFGGFDWRHFR----------GSHIYVPITEKGYWQIKVGDILIENSS-TGFCED 278 (355)
Q Consensus 212 ~i~~--~~fs~~l~~~~~~~~~G~l~~Gg~d~~~~~----------g~l~~~p~~~~~~w~v~~~~i~vg~~~-~~~~~~ 278 (355)
.+.. ++||+||++. .|.|+|||+|++++. +++.|+|+..+.+|.|.+++|+++++. ......
T Consensus 156 ~~~~~~~~FS~~l~~~-----~G~l~~Gg~d~~~~~~~~~~~~~~~~~~~~~p~~~~~~y~v~l~~i~vg~~~~~~~~~~ 230 (326)
T cd06096 156 PKLKKDKIFSICLSED-----GGELTIGGYDKDYTVRNSSIGNNKVSKIVWTPITRKYYYYVKLEGLSVYGTTSNSGNTK 230 (326)
T ss_pred ccccCCceEEEEEcCC-----CeEEEECccChhhhcccccccccccCCceEEeccCCceEEEEEEEEEEcccccceeccc
Confidence 7665 9999999864 799999999999987 889999999889999999999999885 112345
Q ss_pred CeeEEEccCccCcccCHHHHHHHHHHhCCCceEEEeCCceecccC-CEEEEEecCCc
Q 018462 279 GCTAILDSGTSVLAGPTTVVAQINHAIGAEGIVSMQCKTVVFEYG-NMIWEFLISGV 334 (355)
Q Consensus 279 ~~~aiiDTGt~~i~lP~~~~~~i~~~i~~~~~~~v~C~~i~~~fg-~~~~~~~~~~~ 334 (355)
...++|||||+++++|++++++|.+++ -.+.+.|+ +++|+++++++
T Consensus 231 ~~~aivDSGTs~~~lp~~~~~~l~~~~----------P~i~~~f~~g~~~~i~p~~y 277 (326)
T cd06096 231 GLGMLVDSGSTLSHFPEDLYNKINNFF----------PTITIIFENNLKIDWKPSSY 277 (326)
T ss_pred CCCEEEeCCCCcccCCHHHHHHHHhhc----------CcEEEEEcCCcEEEECHHHh
Confidence 678999999999999999999999998 46889998 89999999998
No 17
>cd05474 SAP_like SAPs, pepsin-like proteinases secreted from pathogens to degrade host proteins. SAPs (Secreted aspartic proteinases) are secreted from a group of pathogenic fungi, predominantly Candida species. They are secreted from the pathogen to degrade host proteins. SAP is one of the most significant extracellular hydrolytic enzymes produced by C. albicans. SAP proteins, encoded by a family of 10 SAP genes. All 10 SAP genes of C. albicans encode preproenzymes, approximately 60 amino acid longer than the mature enzyme, which are processed when transported via the secretory pathway. The mature enzymes contain sequence motifs typical for all aspartyl proteinases, including the two conserved aspartate residues other active site and conserved cysteine residues implicated in the maintenance of the three-dimensional structure. Most Sap proteins contain putative N-glycosylation sites, but it remains to be determined which Sap proteins are glycosylated. This family of aspartate proteases
Probab=100.00 E-value=1.6e-41 Score=313.47 Aligned_cols=235 Identities=30% Similarity=0.546 Sum_probs=202.2
Q ss_pred eEEEEEEEcCCCcEEEEEEeCCCCceeEeCCCCCCCcccCCCCcccCCCCcceeecCceEEEEeCCc-cEEEeEEEeeee
Q 018462 79 QYYGEIGIGSPPQSFSVVFDTGSSNLWVPSSKCLFSISCYLHSRYRARLSRTYTKIGVPCKIHYGSG-QISGFFSQDNVK 157 (355)
Q Consensus 79 ~y~~~i~iGtP~q~~~v~~DTGS~~~wv~~~~C~~~~~C~~~~~y~~~~Sst~~~~~~~~~~~Y~~g-~~~G~~~~D~v~ 157 (355)
.|+++|.||||+|++.|+|||||+++||+ .+++.|++| .+.|.+++|+|+
T Consensus 2 ~Y~~~i~iGtp~q~~~v~~DTgS~~~wv~-----------------------------~~~~~Y~~g~~~~G~~~~D~v~ 52 (295)
T cd05474 2 YYSAELSVGTPPQKVTVLLDTGSSDLWVP-----------------------------DFSISYGDGTSASGTWGTDTVS 52 (295)
T ss_pred eEEEEEEECCCCcEEEEEEeCCCCcceee-----------------------------eeEEEeccCCcEEEEEEEEEEE
Confidence 69999999999999999999999999996 678999996 599999999999
Q ss_pred eeeeeecCcEEEEEEecCCccccccccceeeccccccccC-----CCCCchhHHHHHcCCCCccEEEEEecCCCCCCccc
Q 018462 158 IGDMIIKDQEFVEVTKEGLLPFLALQFDGILGLGFRDIAA-----GNATPLWYNMVRQGHISQKIFSLWLNQDPNSEVGG 232 (355)
Q Consensus 158 ig~~~~~~~~fg~~~~~~~~~~~~~~~~GilGLg~~~~s~-----~~~~~~~~~l~~~g~i~~~~fs~~l~~~~~~~~~G 232 (355)
+++..++++.||++.... ..+||||||+...+. ....+++++|++||+|++++||+||.+.. ...|
T Consensus 53 ~g~~~~~~~~fg~~~~~~-------~~~GilGLg~~~~~~~~~~~~~~~s~~~~L~~~g~i~~~~Fsl~l~~~~--~~~g 123 (295)
T cd05474 53 IGGATVKNLQFAVANSTS-------SDVGVLGIGLPGNEATYGTGYTYPNFPIALKKQGLIKKNAYSLYLNDLD--ASTG 123 (295)
T ss_pred ECCeEecceEEEEEecCC-------CCcceeeECCCCCcccccCCCcCCCHHHHHHHCCcccceEEEEEeCCCC--CCce
Confidence 999999999999998732 359999999988743 23457999999999999999999999753 2379
Q ss_pred EEEECCcCCCCcccceEEEeccCc------ceeEEEEeeEEEcCeEeE--eecCCeeEEEccCccCcccCHHHHHHHHHH
Q 018462 233 EIIFGGFDWRHFRGSHIYVPITEK------GYWQIKVGDILIENSSTG--FCEDGCTAILDSGTSVLAGPTTVVAQINHA 304 (355)
Q Consensus 233 ~l~~Gg~d~~~~~g~l~~~p~~~~------~~w~v~~~~i~vg~~~~~--~~~~~~~aiiDTGt~~i~lP~~~~~~i~~~ 304 (355)
.|+|||+|+++|.|+++|+|+... .+|.|.+++|.+++.... .......++|||||+++++|.+++++|.++
T Consensus 124 ~l~~Gg~d~~~~~g~~~~~p~~~~~~~~~~~~~~v~l~~i~v~~~~~~~~~~~~~~~~iiDSGt~~~~lP~~~~~~l~~~ 203 (295)
T cd05474 124 SILFGGVDTAKYSGDLVTLPIVNDNGGSEPSELSVTLSSISVNGSSGNTTLLSKNLPALLDSGTTLTYLPSDIVDAIAKQ 203 (295)
T ss_pred eEEEeeeccceeeceeEEEeCcCcCCCCCceEEEEEEEEEEEEcCCCcccccCCCccEEECCCCccEeCCHHHHHHHHHH
Confidence 999999999999999999999765 789999999999988742 234567899999999999999999999999
Q ss_pred hCCC-----ceEEEeCC-----ceecccCCEEEEEecCCcCccc--cccccCceEeCCc
Q 018462 305 IGAE-----GIVSMQCK-----TVVFEYGNMIWEFLISGVQPET--VCSDIGLCVYNGS 351 (355)
Q Consensus 305 i~~~-----~~~~v~C~-----~i~~~fg~~~~~~~~~~~~~~~--~~~~~~~C~~~~~ 351 (355)
+++. +.|.++|+ .+.+.|++.+|+||++++.-.. .....+.|++...
T Consensus 204 ~~~~~~~~~~~~~~~C~~~~~p~i~f~f~g~~~~i~~~~~~~~~~~~~~~~~~C~~~i~ 262 (295)
T cd05474 204 LGATYDSDEGLYVVDCDAKDDGSLTFNFGGATISVPLSDLVLPASTDDGGDGACYLGIQ 262 (295)
T ss_pred hCCEEcCCCcEEEEeCCCCCCCEEEEEECCeEEEEEHHHhEeccccCCCCCCCeEEEEE
Confidence 9875 77899998 4778999999999999983221 1345788987644
No 18
>PLN03146 aspartyl protease family protein; Provisional
Probab=100.00 E-value=2e-41 Score=326.43 Aligned_cols=254 Identities=22% Similarity=0.366 Sum_probs=197.8
Q ss_pred CCceEEEEEEEcCCCcEEEEEEeCCCCceeEeCCCCCCCcccC--CCCcccCCCCcceeecC------------------
Q 018462 76 LDAQYYGEIGIGSPPQSFSVVFDTGSSNLWVPSSKCLFSISCY--LHSRYRARLSRTYTKIG------------------ 135 (355)
Q Consensus 76 ~~~~y~~~i~iGtP~q~~~v~~DTGS~~~wv~~~~C~~~~~C~--~~~~y~~~~Sst~~~~~------------------ 135 (355)
.+++|+++|.||||||++.|++||||+++||+|.+|. .|. .++.|||++|+||+...
T Consensus 81 ~~~~Y~v~i~iGTPpq~~~vi~DTGS~l~Wv~C~~C~---~C~~~~~~~fdps~SST~~~~~C~s~~C~~~~~~~~c~~~ 157 (431)
T PLN03146 81 NGGEYLMNISIGTPPVPILAIADTGSDLIWTQCKPCD---DCYKQVSPLFDPKKSSTYKDVSCDSSQCQALGNQASCSDE 157 (431)
T ss_pred CCccEEEEEEcCCCCceEEEEECCCCCcceEcCCCCc---ccccCCCCcccCCCCCCCcccCCCCcccccCCCCCCCCCC
Confidence 4679999999999999999999999999999999997 576 35789999999998743
Q ss_pred --ceEEEEeCCcc-EEEeEEEeeeeeee-----eeecCcEEEEEEecCCccccccccceeeccccccccCCCCCchhHHH
Q 018462 136 --VPCKIHYGSGQ-ISGFFSQDNVKIGD-----MIIKDQEFVEVTKEGLLPFLALQFDGILGLGFRDIAAGNATPLWYNM 207 (355)
Q Consensus 136 --~~~~~~Y~~g~-~~G~~~~D~v~ig~-----~~~~~~~fg~~~~~~~~~~~~~~~~GilGLg~~~~s~~~~~~~~~~l 207 (355)
|.|.+.|++|+ +.|.+++|+|+|++ ..++++.|||+....+ .+. ...+||||||+...+ ++.||
T Consensus 158 ~~c~y~i~Ygdgs~~~G~l~~Dtltlg~~~~~~~~v~~~~FGc~~~~~g-~f~-~~~~GilGLG~~~~S------l~sql 229 (431)
T PLN03146 158 NTCTYSYSYGDGSFTKGNLAVETLTIGSTSGRPVSFPGIVFGCGHNNGG-TFD-EKGSGIVGLGGGPLS------LISQL 229 (431)
T ss_pred CCCeeEEEeCCCCceeeEEEEEEEEeccCCCCcceeCCEEEeCCCCCCC-Ccc-CCCceeEecCCCCcc------HHHHh
Confidence 78999999998 68999999999987 4588999999987654 232 257999999998776 56666
Q ss_pred HHcCCCCccEEEEEecCCC-CCCcccEEEECCcCCCCccc-ceEEEeccC---cceeEEEEeeEEEcCeEeEeecC----
Q 018462 208 VRQGHISQKIFSLWLNQDP-NSEVGGEIIFGGFDWRHFRG-SHIYVPITE---KGYWQIKVGDILIENSSTGFCED---- 278 (355)
Q Consensus 208 ~~~g~i~~~~fs~~l~~~~-~~~~~G~l~~Gg~d~~~~~g-~l~~~p~~~---~~~w~v~~~~i~vg~~~~~~~~~---- 278 (355)
..+ +. ++||+||.+.. +....|.|+||+. +++.| .+.|+|+.. ..+|.|.+++|+||++.+.+...
T Consensus 230 ~~~--~~-~~FSycL~~~~~~~~~~g~l~fG~~--~~~~~~~~~~tPl~~~~~~~~y~V~L~gIsVgg~~l~~~~~~~~~ 304 (431)
T PLN03146 230 GSS--IG-GKFSYCLVPLSSDSNGTSKINFGTN--AIVSGSGVVSTPLVSKDPDTFYYLTLEAISVGSKKLPYTGSSKNG 304 (431)
T ss_pred hHh--hC-CcEEEECCCCCCCCCCcceEEeCCc--cccCCCCceEcccccCCCCCeEEEeEEEEEECCEECcCCcccccc
Confidence 543 43 49999997532 2234799999984 55554 489999964 46999999999999988753221
Q ss_pred --CeeEEEccCccCcccCHHHHHHHHHHh----CCC-----ceEEEeCC---------ceecccCCEEEEEecCCcCccc
Q 018462 279 --GCTAILDSGTSVLAGPTTVVAQINHAI----GAE-----GIVSMQCK---------TVVFEYGNMIWEFLISGVQPET 338 (355)
Q Consensus 279 --~~~aiiDTGt~~i~lP~~~~~~i~~~i----~~~-----~~~~v~C~---------~i~~~fg~~~~~~~~~~~~~~~ 338 (355)
...+||||||++++||+++|++|.+++ +.. ..+..+|. .+.++|+|..+.|++.++.-.
T Consensus 305 ~~~g~~iiDSGTt~t~Lp~~~y~~l~~~~~~~~~~~~~~~~~~~~~~C~~~~~~~~~P~i~~~F~Ga~~~l~~~~~~~~- 383 (431)
T PLN03146 305 VEEGNIIIDSGTTLTLLPSDFYSELESAVEEAIGGERVSDPQGLLSLCYSSTSDIKLPIITAHFTGADVKLQPLNTFVK- 383 (431)
T ss_pred CCCCcEEEeCCccceecCHHHHHHHHHHHHHHhccccCCCCCCCCCccccCCCCCCCCeEEEEECCCeeecCcceeEEE-
Confidence 247999999999999999998877654 321 12345785 377899999999998876221
Q ss_pred cccccCceE
Q 018462 339 VCSDIGLCV 347 (355)
Q Consensus 339 ~~~~~~~C~ 347 (355)
..+...|.
T Consensus 384 -~~~~~~Cl 391 (431)
T PLN03146 384 -VSEDLVCF 391 (431)
T ss_pred -cCCCcEEE
Confidence 12345674
No 19
>cd05471 pepsin_like Pepsin-like aspartic proteases, bilobal enzymes that cleave bonds in peptides at acidic pH. Pepsin-like aspartic proteases are found in mammals, plants, fungi and bacteria. These well known and extensively characterized enzymes include pepsins, chymosin, renin, cathepsins, and fungal aspartic proteases. Several have long been known to be medically (renin, cathepsin D and E, pepsin) or commercially (chymosin) important. Structurally, aspartic proteases are bilobal enzymes, each lobe contributing a catalytic Aspartate residue, with an extended active site cleft localized between the two lobes of the molecule. The N- and C-terminal domains, although structurally related by a 2-fold axis, have only limited sequence homology except the vicinity of the active site. This suggests that the enzymes evolved by an ancient duplication event. Most members of the pepsin family specifically cleave bonds in peptides that are at least six residues in length, with hydrophobic residu
Probab=100.00 E-value=2.4e-40 Score=303.33 Aligned_cols=236 Identities=42% Similarity=0.744 Sum_probs=205.3
Q ss_pred EEEEEEEcCCCcEEEEEEeCCCCceeEeCCCCCCCcccCCCCc--ccCCCCcceeecCceEEEEeCCccEEEeEEEeeee
Q 018462 80 YYGEIGIGSPPQSFSVVFDTGSSNLWVPSSKCLFSISCYLHSR--YRARLSRTYTKIGVPCKIHYGSGQISGFFSQDNVK 157 (355)
Q Consensus 80 y~~~i~iGtP~q~~~v~~DTGS~~~wv~~~~C~~~~~C~~~~~--y~~~~Sst~~~~~~~~~~~Y~~g~~~G~~~~D~v~ 157 (355)
|+++|.||+|+|++.|++||||+++||+|..|.. ..|..... |++..|+++....+.+.+.|++|++.|.+++|+|+
T Consensus 1 Y~~~i~iGtp~q~~~l~~DTGS~~~wv~~~~c~~-~~~~~~~~~~~~~~~s~~~~~~~~~~~~~Y~~g~~~g~~~~D~v~ 79 (283)
T cd05471 1 YYGEITIGTPPQKFSVIFDTGSSLLWVPSSNCTS-CSCQKHPRFKYDSSKSSTYKDTGCTFSITYGDGSVTGGLGTDTVT 79 (283)
T ss_pred CEEEEEECCCCcEEEEEEeCCCCCEEEecCCCCc-cccccCCCCccCccCCceeecCCCEEEEEECCCeEEEEEEEeEEE
Confidence 7899999999999999999999999999999973 23333333 89999999999999999999999999999999999
Q ss_pred eeeeeecCcEEEEEEecCCccccccccceeeccccccccCCCCCchhHHHHHcCCCCccEEEEEecCCCCCCcccEEEEC
Q 018462 158 IGDMIIKDQEFVEVTKEGLLPFLALQFDGILGLGFRDIAAGNATPLWYNMVRQGHISQKIFSLWLNQDPNSEVGGEIIFG 237 (355)
Q Consensus 158 ig~~~~~~~~fg~~~~~~~~~~~~~~~~GilGLg~~~~s~~~~~~~~~~l~~~g~i~~~~fs~~l~~~~~~~~~G~l~~G 237 (355)
|++..++++.||++..... .+.....+||||||+...+.....+++++|.++++|.+++||+||.+..+....|.|+||
T Consensus 80 ~~~~~~~~~~fg~~~~~~~-~~~~~~~~GilGLg~~~~~~~~~~s~~~~l~~~~~i~~~~Fs~~l~~~~~~~~~g~l~~G 158 (283)
T cd05471 80 IGGLTIPNQTFGCATSESG-DFSSSGFDGILGLGFPSLSVDGVPSFFDQLKSQGLISSPVFSFYLGRDGDGGNGGELTFG 158 (283)
T ss_pred ECCEEEeceEEEEEeccCC-cccccccceEeecCCcccccccCCCHHHHHHHCCCCCCCEEEEEEcCCCCCCCCCEEEEc
Confidence 9999999999999988754 344567899999999987766678899999999999999999999985322348999999
Q ss_pred CcCCCCcccceEEEeccC--cceeEEEEeeEEEcCeEeEeecCCeeEEEccCccCcccCHHHHHHHHHHhCCC-----ce
Q 018462 238 GFDWRHFRGSHIYVPITE--KGYWQIKVGDILIENSSTGFCEDGCTAILDSGTSVLAGPTTVVAQINHAIGAE-----GI 310 (355)
Q Consensus 238 g~d~~~~~g~l~~~p~~~--~~~w~v~~~~i~vg~~~~~~~~~~~~aiiDTGt~~i~lP~~~~~~i~~~i~~~-----~~ 310 (355)
|+|++++.+++.|+|+.. ..+|.|.+++|.+++...........++||||++++++|.+++++|.+++++. ..
T Consensus 159 g~d~~~~~~~~~~~p~~~~~~~~~~v~l~~i~v~~~~~~~~~~~~~~iiDsGt~~~~lp~~~~~~l~~~~~~~~~~~~~~ 238 (283)
T cd05471 159 GIDPSKYTGDLTYTPVVSNGPGYWQVPLDGISVGGKSVISSSGGGGAIVDSGTSLIYLPSSVYDAILKALGAAVSSSDGG 238 (283)
T ss_pred ccCccccCCceEEEecCCCCCCEEEEEeCeEEECCceeeecCCCcEEEEecCCCCEeCCHHHHHHHHHHhCCcccccCCc
Confidence 999999999999999988 78999999999999973222456778999999999999999999999999875 35
Q ss_pred EEEeCCc
Q 018462 311 VSMQCKT 317 (355)
Q Consensus 311 ~~v~C~~ 317 (355)
+..+|..
T Consensus 239 ~~~~~~~ 245 (283)
T cd05471 239 YGVDCSP 245 (283)
T ss_pred EEEeCcc
Confidence 6677763
No 20
>cd05472 cnd41_like Chloroplast Nucleoids DNA-binding Protease, catalyzes the degradation of ribulose-1,5-bisphosphate carboxylase/oxygenase. Chloroplast Nucleoids DNA-binding Protease catalyzes the degradation of ribulose-1,5-bisphosphate carboxylase/oxygenase (Rubisco) in senescent leaves of tobacco. Antisense tobacco with reduced amount of CND41 maintained green leaves and constant protein levels, especially Rubisco. CND41 has DNA-binding as well as aspartic protease activities. The pepsin-like aspartic protease domain is located at the C-terminus of the protein. The enzyme is characterized by having two aspartic protease catalytic site motifs, the Asp-Thr-Gly-Ser in the N-terminal and Asp-Ser-Gly-Ser in the C-terminal region. Aspartic proteases are bilobal enzymes, each lobe contributing a catalytic Asp residue, with an extended active site cleft localized between the two lobes of the molecule. One lobe may be evolved from the other through ancient gene-duplication event. This fami
Probab=100.00 E-value=1.7e-40 Score=307.13 Aligned_cols=229 Identities=24% Similarity=0.400 Sum_probs=186.1
Q ss_pred eEEEEEEEcCCCcEEEEEEeCCCCceeEeCCCCCCCcccCCCCcccCCCCcceeecCceEEEEeCCcc-EEEeEEEeeee
Q 018462 79 QYYGEIGIGSPPQSFSVVFDTGSSNLWVPSSKCLFSISCYLHSRYRARLSRTYTKIGVPCKIHYGSGQ-ISGFFSQDNVK 157 (355)
Q Consensus 79 ~y~~~i~iGtP~q~~~v~~DTGS~~~wv~~~~C~~~~~C~~~~~y~~~~Sst~~~~~~~~~~~Y~~g~-~~G~~~~D~v~ 157 (355)
+|+++|.||||||++.|+|||||+++||+|.+| +.|.++|++|+ ++|.+++|+|+
T Consensus 1 ~Y~~~i~iGtP~q~~~v~~DTGSs~~Wv~c~~c------------------------~~~~i~Yg~Gs~~~G~~~~D~v~ 56 (299)
T cd05472 1 EYVVTVGLGTPARDQTVIVDTGSDLTWVQCQPC------------------------CLYQVSYGDGSYTTGDLATDTLT 56 (299)
T ss_pred CeEEEEecCCCCcceEEEecCCCCcccccCCCC------------------------CeeeeEeCCCceEEEEEEEEEEE
Confidence 599999999999999999999999999976544 68999999998 58999999999
Q ss_pred eeee-eecCcEEEEEEecCCccccccccceeeccccccccCCCCCchhHHHHHcCCCCccEEEEEecCCCCCCcccEEEE
Q 018462 158 IGDM-IIKDQEFVEVTKEGLLPFLALQFDGILGLGFRDIAAGNATPLWYNMVRQGHISQKIFSLWLNQDPNSEVGGEIIF 236 (355)
Q Consensus 158 ig~~-~~~~~~fg~~~~~~~~~~~~~~~~GilGLg~~~~s~~~~~~~~~~l~~~g~i~~~~fs~~l~~~~~~~~~G~l~~ 236 (355)
|++. .++++.|||+....+. + ...+||||||++..+ +..++..+ .+++||+||.+.. ....|+|+|
T Consensus 57 ig~~~~~~~~~Fg~~~~~~~~-~--~~~~GilGLg~~~~s------~~~ql~~~---~~~~FS~~L~~~~-~~~~G~l~f 123 (299)
T cd05472 57 LGSSDVVPGFAFGCGHDNEGL-F--GGAAGLLGLGRGKLS------LPSQTASS---YGGVFSYCLPDRS-SSSSGYLSF 123 (299)
T ss_pred eCCCCccCCEEEECCccCCCc-c--CCCCEEEECCCCcch------HHHHhhHh---hcCceEEEccCCC-CCCCceEEe
Confidence 9998 8999999999876542 2 267999999987765 44556544 3589999998753 133899999
Q ss_pred CCcCCCCcccceEEEeccCc----ceeEEEEeeEEEcCeEeEee---cCCeeEEEccCccCcccCHHHHHHHHHHhCCC-
Q 018462 237 GGFDWRHFRGSHIYVPITEK----GYWQIKVGDILIENSSTGFC---EDGCTAILDSGTSVLAGPTTVVAQINHAIGAE- 308 (355)
Q Consensus 237 Gg~d~~~~~g~l~~~p~~~~----~~w~v~~~~i~vg~~~~~~~---~~~~~aiiDTGt~~i~lP~~~~~~i~~~i~~~- 308 (355)
||+|++ .|++.|+|+..+ .+|.|++++|+|+++.+... .....++|||||+++++|++++++|.+++++.
T Consensus 124 Gg~d~~--~g~l~~~pv~~~~~~~~~y~v~l~~i~vg~~~~~~~~~~~~~~~~ivDSGTt~~~lp~~~~~~l~~~l~~~~ 201 (299)
T cd05472 124 GAAASV--PAGASFTPMLSNPRVPTFYYVGLTGISVGGRRLPIPPASFGAGGVIIDSGTVITRLPPSAYAALRDAFRAAM 201 (299)
T ss_pred CCcccc--CCCceECCCccCCCCCCeEEEeeEEEEECCEECCCCccccCCCCeEEeCCCcceecCHHHHHHHHHHHHHHh
Confidence 999999 999999999753 69999999999999887532 23467999999999999999999999988642
Q ss_pred -------ceEEEe-CC-----------ceecccC-CEEEEEecCCcCccccccccCceE
Q 018462 309 -------GIVSMQ-CK-----------TVVFEYG-NMIWEFLISGVQPETVCSDIGLCV 347 (355)
Q Consensus 309 -------~~~~v~-C~-----------~i~~~fg-~~~~~~~~~~~~~~~~~~~~~~C~ 347 (355)
+.+.++ |. .+.|.|+ +..|+|++.++.-. .......|+
T Consensus 202 ~~~~~~~~~~~~~~C~~~~~~~~~~~P~i~f~f~~g~~~~l~~~~y~~~-~~~~~~~C~ 259 (299)
T cd05472 202 AAYPRAPGFSILDTCYDLSGFRSVSVPTVSLHFQGGADVELDASGVLYP-VDDSSQVCL 259 (299)
T ss_pred ccCCCCCCCCCCCccCcCCCCcCCccCCEEEEECCCCEEEeCcccEEEE-ecCCCCEEE
Confidence 334454 83 3778996 89999999998321 123456785
No 21
>cd05476 pepsin_A_like_plant Chroloplast Nucleoids DNA-binding Protease and Nucellin, pepsin-like aspartic proteases from plants. This family contains pepsin like aspartic proteases from plants including Chloroplast Nucleoids DNA-binding Protease and Nucellin. Chloroplast Nucleoids DNA-binding Protease catalyzes the degradation of ribulose-1,5-bisphosphate carboxylase/oxygenase (Rubisco) in senescent leaves of tobacco and Nucellins are important regulators of nucellar cell's progressive degradation after ovule fertilization. Structurally, aspartic proteases are bilobal enzymes, each lobe contributing a catalytic Asp residue, with an extended active site cleft localized between the two lobes of the molecule. The N- and C-terminal domains, although structurally related by a 2-fold axis, have only limited sequence homology except the vicinity of the active site. This suggests that the enzymes evolved by an ancient duplication event. The enzymes specifically cleave bonds in peptides which
Probab=100.00 E-value=2.3e-38 Score=287.83 Aligned_cols=210 Identities=23% Similarity=0.371 Sum_probs=178.3
Q ss_pred eEEEEEEEcCCCcEEEEEEeCCCCceeEeCCCCCCCcccCCCCcccCCCCcceeecCceEEEEeCCcc-EEEeEEEeeee
Q 018462 79 QYYGEIGIGSPPQSFSVVFDTGSSNLWVPSSKCLFSISCYLHSRYRARLSRTYTKIGVPCKIHYGSGQ-ISGFFSQDNVK 157 (355)
Q Consensus 79 ~y~~~i~iGtP~q~~~v~~DTGS~~~wv~~~~C~~~~~C~~~~~y~~~~Sst~~~~~~~~~~~Y~~g~-~~G~~~~D~v~ 157 (355)
+|+++|+||||||++.|+|||||+++||+| |.+.++|++|+ ++|.+++|+|+
T Consensus 1 ~Y~~~i~iGtP~q~~~v~~DTGSs~~wv~~---------------------------~~~~~~Y~dg~~~~G~~~~D~v~ 53 (265)
T cd05476 1 EYLVTLSIGTPPQPFSLIVDTGSDLTWTQC---------------------------CSYEYSYGDGSSTSGVLATETFT 53 (265)
T ss_pred CeEEEEecCCCCcceEEEecCCCCCEEEcC---------------------------CceEeEeCCCceeeeeEEEEEEE
Confidence 599999999999999999999999999974 46889999776 89999999999
Q ss_pred eeee--eecCcEEEEEEecCCccccccccceeeccccccccCCCCCchhHHHHHcCCCCccEEEEEecCCCCCCcccEEE
Q 018462 158 IGDM--IIKDQEFVEVTKEGLLPFLALQFDGILGLGFRDIAAGNATPLWYNMVRQGHISQKIFSLWLNQDPNSEVGGEII 235 (355)
Q Consensus 158 ig~~--~~~~~~fg~~~~~~~~~~~~~~~~GilGLg~~~~s~~~~~~~~~~l~~~g~i~~~~fs~~l~~~~~~~~~G~l~ 235 (355)
|++. .++++.||++..... +.....+||||||+...+ ++.+|..++ ++||+||.+..+....|+|+
T Consensus 54 ~g~~~~~~~~~~Fg~~~~~~~--~~~~~~~GIlGLg~~~~s------~~~ql~~~~----~~Fs~~l~~~~~~~~~G~l~ 121 (265)
T cd05476 54 FGDSSVSVPNVAFGCGTDNEG--GSFGGADGILGLGRGPLS------LVSQLGSTG----NKFSYCLVPHDDTGGSSPLI 121 (265)
T ss_pred ecCCCCccCCEEEEecccccC--CccCCCCEEEECCCCccc------HHHHhhccc----CeeEEEccCCCCCCCCCeEE
Confidence 9998 899999999987654 455678999999987654 677887776 79999998753334589999
Q ss_pred ECCcCCCCcccceEEEeccC----cceeEEEEeeEEEcCeEeEe--------ecCCeeEEEccCccCcccCHHHHHHHHH
Q 018462 236 FGGFDWRHFRGSHIYVPITE----KGYWQIKVGDILIENSSTGF--------CEDGCTAILDSGTSVLAGPTTVVAQINH 303 (355)
Q Consensus 236 ~Gg~d~~~~~g~l~~~p~~~----~~~w~v~~~~i~vg~~~~~~--------~~~~~~aiiDTGt~~i~lP~~~~~~i~~ 303 (355)
|||+|++ +.|+++|+|+.. .++|.|++++|+++++.+.+ ......++|||||+++++|++++
T Consensus 122 fGg~d~~-~~~~l~~~p~~~~~~~~~~~~v~l~~i~v~~~~~~~~~~~~~~~~~~~~~ai~DTGTs~~~lp~~~~----- 195 (265)
T cd05476 122 LGDAADL-GGSGVVYTPLVKNPANPTYYYVNLEGISVGGKRLPIPPSVFAIDSDGSGGTIIDSGTTLTYLPDPAY----- 195 (265)
T ss_pred ECCcccc-cCCCceEeecccCCCCCCceEeeeEEEEECCEEecCCchhcccccCCCCcEEEeCCCcceEcCcccc-----
Confidence 9999999 999999999976 57999999999999987642 24567899999999999999988
Q ss_pred HhCCCceEEEeCCceecccC-CEEEEEecCCcCccccccccCceE
Q 018462 304 AIGAEGIVSMQCKTVVFEYG-NMIWEFLISGVQPETVCSDIGLCV 347 (355)
Q Consensus 304 ~i~~~~~~~v~C~~i~~~fg-~~~~~~~~~~~~~~~~~~~~~~C~ 347 (355)
-.+.+.|+ ++.|.+++.++.-. ......|+
T Consensus 196 ------------P~i~~~f~~~~~~~i~~~~y~~~--~~~~~~C~ 226 (265)
T cd05476 196 ------------PDLTLHFDGGADLELPPENYFVD--VGEGVVCL 226 (265)
T ss_pred ------------CCEEEEECCCCEEEeCcccEEEE--CCCCCEEE
Confidence 46889998 99999999998332 23456784
No 22
>cd05475 nucellin_like Nucellins, plant aspartic proteases specifically expressed in nucellar cells during degradation. Nucellins are important regulators of nucellar cell's progressive degradation after ovule fertilization. This degradation is a characteristic of programmed cell death. Nucellins are plant aspartic proteases specifically expressed in nucellar cells during degradation. The enzyme is characterized by having two aspartic protease catalytic site motifs, the Asp-Thr-Gly-Ser in the N-terminal and Asp-Ser-Gly-Ser in the C-terminal region, and two other regions nearly identical to two regions of plant aspartic proteases. Aspartic proteases are bilobal enzymes, each lobe contributing a catalytic Asp residue, with an extended active site cleft localized between the two lobes of the molecule. One lobe may be evolved from the other through ancient gene-duplication event. Although the three-dimensional structures of the two lobes are very similar, the amino acid sequences are more d
Probab=100.00 E-value=1.3e-37 Score=283.96 Aligned_cols=206 Identities=23% Similarity=0.359 Sum_probs=173.0
Q ss_pred ceEEEEEEEcCCCcEEEEEEeCCCCceeEeCC-CCCCCcccCCCCcccCCCCcceeecCceEEEEeCCcc-EEEeEEEee
Q 018462 78 AQYYGEIGIGSPPQSFSVVFDTGSSNLWVPSS-KCLFSISCYLHSRYRARLSRTYTKIGVPCKIHYGSGQ-ISGFFSQDN 155 (355)
Q Consensus 78 ~~y~~~i~iGtP~q~~~v~~DTGS~~~wv~~~-~C~~~~~C~~~~~y~~~~Sst~~~~~~~~~~~Y~~g~-~~G~~~~D~ 155 (355)
++|+++|.||||||++.|++||||+++||+|. .|. .| .+.|.++|++++ ++|.+++|+
T Consensus 1 ~~Y~~~i~iGtP~q~~~v~~DTGS~~~Wv~c~~~c~---~c-----------------~c~~~i~Ygd~~~~~G~~~~D~ 60 (273)
T cd05475 1 GYYYVTINIGNPPKPYFLDIDTGSDLTWLQCDAPCT---GC-----------------QCDYEIEYADGGSSMGVLVTDI 60 (273)
T ss_pred CceEEEEEcCCCCeeEEEEEccCCCceEEeCCCCCC---CC-----------------cCccEeEeCCCCceEEEEEEEE
Confidence 47999999999999999999999999999984 565 45 468999999664 899999999
Q ss_pred eeeee----eeecCcEEEEEEecCCcc-ccccccceeeccccccccCCCCCchhHHHHHcCCCCccEEEEEecCCCCCCc
Q 018462 156 VKIGD----MIIKDQEFVEVTKEGLLP-FLALQFDGILGLGFRDIAAGNATPLWYNMVRQGHISQKIFSLWLNQDPNSEV 230 (355)
Q Consensus 156 v~ig~----~~~~~~~fg~~~~~~~~~-~~~~~~~GilGLg~~~~s~~~~~~~~~~l~~~g~i~~~~fs~~l~~~~~~~~ 230 (355)
|+++. ..++++.|||+....... ......+||||||+...+ ++.+|.++++| +++||+||.+. .
T Consensus 61 v~~~~~~~~~~~~~~~Fgc~~~~~~~~~~~~~~~dGIlGLg~~~~s------~~~ql~~~~~i-~~~Fs~~l~~~----~ 129 (273)
T cd05475 61 FSLKLTNGSRAKPRIAFGCGYDQQGPLLNPPPPTDGILGLGRGKIS------LPSQLASQGII-KNVIGHCLSSN----G 129 (273)
T ss_pred EEEeecCCCcccCCEEEEeeeccCCcccCCCccCCEEEECCCCCCC------HHHHHHhcCCc-CceEEEEccCC----C
Confidence 99964 467899999997654321 234567999999997654 88999999999 89999999873 1
Q ss_pred ccEEEECCcCCCCcccceEEEeccCc---ceeEEEEeeEEEcCeEeEeecCCeeEEEccCccCcccCHHHHHHHHHHhCC
Q 018462 231 GGEIIFGGFDWRHFRGSHIYVPITEK---GYWQIKVGDILIENSSTGFCEDGCTAILDSGTSVLAGPTTVVAQINHAIGA 307 (355)
Q Consensus 231 ~G~l~~Gg~d~~~~~g~l~~~p~~~~---~~w~v~~~~i~vg~~~~~~~~~~~~aiiDTGt~~i~lP~~~~~~i~~~i~~ 307 (355)
+|.|+|| |..++.|++.|+|+.++ .+|.|++.+|+||++.. ......++|||||+++++|++++
T Consensus 130 ~g~l~~G--~~~~~~g~i~ytpl~~~~~~~~y~v~l~~i~vg~~~~--~~~~~~~ivDTGTt~t~lp~~~y--------- 196 (273)
T cd05475 130 GGFLFFG--DDLVPSSGVTWTPMRRESQKKHYSPGPASLLFNGQPT--GGKGLEVVFDSGSSYTYFNAQAY--------- 196 (273)
T ss_pred CeEEEEC--CCCCCCCCeeecccccCCCCCeEEEeEeEEEECCEEC--cCCCceEEEECCCceEEcCCccc---------
Confidence 6899998 56678899999999874 79999999999999864 34567899999999999999876
Q ss_pred CceEEEeCCceecccCC----EEEEEecCCc
Q 018462 308 EGIVSMQCKTVVFEYGN----MIWEFLISGV 334 (355)
Q Consensus 308 ~~~~~v~C~~i~~~fg~----~~~~~~~~~~ 334 (355)
+| .+.+.|++ ++++||++++
T Consensus 197 -----~p--~i~~~f~~~~~~~~~~l~~~~y 220 (273)
T cd05475 197 -----FK--PLTLKFGKGWRTRLLEIPPENY 220 (273)
T ss_pred -----cc--cEEEEECCCCceeEEEeCCCce
Confidence 22 57788876 7999999998
No 23
>cd05489 xylanase_inhibitor_I_like TAXI-I inhibits degradation of xylan in the cell wall. Xylanase inhibitor-I (TAXI-I) is a member of potent TAXI-type inhibitors of fungal and bacterial family 11 xylanases. Plants developed a diverse battery of defense mechanisms in response to continual challenges by a broad spectrum of pathogenic microorganisms. Their defense arsenal includes inhibitors of cell wall-degrading enzymes, which hinder a possible invasion and colonization by antagonists. Xylanases of fungal and bacterial pathogens are the key enzymes in the degradation of xylan in the cell wall. Plants secrete proteins that inhibit these degradation glycosidases, including xylanase. Surprisingly, TAXI-I displays structural homology with the pepsin-like family of aspartic proteases but is proteolytically nonfunctional, because one or more residues of the essential catalytic triad are absent. The structure of the TAXI-inhibitor, Aspergillus niger xylanase I complex, illustrates the ability
Probab=100.00 E-value=4.8e-32 Score=255.78 Aligned_cols=249 Identities=18% Similarity=0.220 Sum_probs=183.5
Q ss_pred EcCCCcE-EEEEEeCCCCceeEeCCCCCC---------CcccCCCCcccCCC------CcceeecCceEEEE-eCCcc-E
Q 018462 86 IGSPPQS-FSVVFDTGSSNLWVPSSKCLF---------SISCYLHSRYRARL------SRTYTKIGVPCKIH-YGSGQ-I 147 (355)
Q Consensus 86 iGtP~q~-~~v~~DTGS~~~wv~~~~C~~---------~~~C~~~~~y~~~~------Sst~~~~~~~~~~~-Y~~g~-~ 147 (355)
+|+|-.+ +.|++||||+++||+|.+|.. +..|..+..|++.+ ++...+..|.+... |++|+ .
T Consensus 2 ~~~~~~~~~~~~~DTGS~l~WvqC~~~~sst~~~~~C~s~~C~~~~~~~~~~~~~~~~~~~c~~~~C~y~~~~y~~gs~t 81 (362)
T cd05489 2 TITPLKGAVPLVLDLAGPLLWSTCDAGHSSTYQTVPCSSSVCSLANRYHCPGTCGGAPGPGCGNNTCTAHPYNPVTGECA 81 (362)
T ss_pred cccCccCCeeEEEECCCCceeeeCCCCCcCCCCccCcCChhhccccccCCCccccCCCCCCCCCCcCeeEccccccCcEe
Confidence 4777777 999999999999997764431 45677666676543 12222334666544 77885 7
Q ss_pred EEeEEEeeeeeee--------eeecCcEEEEEEecCCccccccccceeeccccccccCCCCCchhHHHHHcCCCCccEEE
Q 018462 148 SGFFSQDNVKIGD--------MIIKDQEFVEVTKEGLLPFLALQFDGILGLGFRDIAAGNATPLWYNMVRQGHISQKIFS 219 (355)
Q Consensus 148 ~G~~~~D~v~ig~--------~~~~~~~fg~~~~~~~~~~~~~~~~GilGLg~~~~s~~~~~~~~~~l~~~g~i~~~~fs 219 (355)
.|.+++|+|+|+. ..++++.|||+.......+ ...++||||||++.++ +..||..++. .+++||
T Consensus 82 ~G~l~~Dtl~~~~~~g~~~~~~~~~~~~FGC~~~~~~~~~-~~~~dGIlGLg~~~lS------l~sql~~~~~-~~~~FS 153 (362)
T cd05489 82 TGDLTQDVLSANTTDGSNPLLVVIFNFVFSCAPSLLLKGL-PPGAQGVAGLGRSPLS------LPAQLASAFG-VARKFA 153 (362)
T ss_pred eEEEEEEEEEecccCCCCcccceeCCEEEEcCCcccccCC-ccccccccccCCCccc------hHHHhhhhcC-CCcceE
Confidence 8999999999974 3688999999976432122 2347999999999887 5567776655 478999
Q ss_pred EEecCCCCCCcccEEEECCcCCCCcc------cceEEEeccCc----ceeEEEEeeEEEcCeEeEee--------cCCee
Q 018462 220 LWLNQDPNSEVGGEIIFGGFDWRHFR------GSHIYVPITEK----GYWQIKVGDILIENSSTGFC--------EDGCT 281 (355)
Q Consensus 220 ~~l~~~~~~~~~G~l~~Gg~d~~~~~------g~l~~~p~~~~----~~w~v~~~~i~vg~~~~~~~--------~~~~~ 281 (355)
+||.+.. ...|.|+||+.++.++. ++++|+|+..+ .+|.|++++|+||++.+.+. .....
T Consensus 154 ~CL~~~~--~~~g~l~fG~~~~~~~~~~~~~~~~~~~tPl~~~~~~~~~Y~v~l~~IsVg~~~l~~~~~~~~~~~~~~~g 231 (362)
T cd05489 154 LCLPSSP--GGPGVAIFGGGPYYLFPPPIDLSKSLSYTPLLTNPRKSGEYYIGVTSIAVNGHAVPLNPTLSANDRLGPGG 231 (362)
T ss_pred EEeCCCC--CCCeeEEECCCchhcccccccccCCccccccccCCCCCCceEEEEEEEEECCEECCCCchhccccccCCCc
Confidence 9998753 23799999999988775 78999999754 79999999999999877532 22357
Q ss_pred EEEccCccCcccCHHHHHHHHHHhCCC----ceEEE------eCC---------------ceecccCC--EEEEEecCCc
Q 018462 282 AILDSGTSVLAGPTTVVAQINHAIGAE----GIVSM------QCK---------------TVVFEYGN--MIWEFLISGV 334 (355)
Q Consensus 282 aiiDTGt~~i~lP~~~~~~i~~~i~~~----~~~~v------~C~---------------~i~~~fg~--~~~~~~~~~~ 334 (355)
++|||||++++||.++|++|.+++.+. +.+.. .|- .+.++|++ ..++|+++++
T Consensus 232 ~iiDSGTs~t~lp~~~y~~l~~a~~~~~~~~~~~~~~~~~~~~C~~~~~~~~~~~~~~~P~it~~f~g~g~~~~l~~~ny 311 (362)
T cd05489 232 VKLSTVVPYTVLRSDIYRAFTQAFAKATARIPRVPAAAVFPELCYPASALGNTRLGYAVPAIDLVLDGGGVNWTIFGANS 311 (362)
T ss_pred EEEecCCceEEECHHHHHHHHHHHHHHhcccCcCCCCCCCcCccccCCCcCCcccccccceEEEEEeCCCeEEEEcCCce
Confidence 999999999999999999999887532 11111 342 26788965 9999999998
Q ss_pred CccccccccCce
Q 018462 335 QPETVCSDIGLC 346 (355)
Q Consensus 335 ~~~~~~~~~~~C 346 (355)
.-+. .+...|
T Consensus 312 ~~~~--~~~~~C 321 (362)
T cd05489 312 MVQV--KGGVAC 321 (362)
T ss_pred EEEc--CCCcEE
Confidence 3321 234568
No 24
>cd05470 pepsin_retropepsin_like Cellular and retroviral pepsin-like aspartate proteases. This family includes both cellular and retroviral pepsin-like aspartate proteases. The cellular pepsin and pepsin-like enzymes are twice as long as their retroviral counterparts. The cellular pepsin-like aspartic proteases are found in mammals, plants, fungi and bacteria. These well known and extensively characterized enzymes include pepsins, chymosin, rennin, cathepsins, and fungal aspartic proteases. Several have long been known to be medically (rennin, cathepsin D and E, pepsin) or commercially (chymosin) important. The eukaryotic pepsin-like proteases contain two domains possessing similar topological features. The N- and C-terminal domains, although structurally related by a 2-fold axis, have only limited sequence homology except in the vicinity of the active site. This suggests that the enzymes evolved by an ancient duplication event. The eukaryotic pepsin-like proteases have two active site
Probab=99.92 E-value=1.9e-24 Score=169.60 Aligned_cols=108 Identities=52% Similarity=0.840 Sum_probs=95.5
Q ss_pred EEEEEcCCCcEEEEEEeCCCCceeEeCCCCCCCcccCCCCcc-cCCCCcceeecCceEEEEeCCccEEEeEEEeeeeeee
Q 018462 82 GEIGIGSPPQSFSVVFDTGSSNLWVPSSKCLFSISCYLHSRY-RARLSRTYTKIGVPCKIHYGSGQISGFFSQDNVKIGD 160 (355)
Q Consensus 82 ~~i~iGtP~q~~~v~~DTGS~~~wv~~~~C~~~~~C~~~~~y-~~~~Sst~~~~~~~~~~~Y~~g~~~G~~~~D~v~ig~ 160 (355)
++|.||||||++.|+|||||+++||++..|. ...|..++.| +|++|++++...+.+.+.|++|++.|.+++|+|+|++
T Consensus 1 ~~i~vGtP~q~~~~~~DTGSs~~Wv~~~~c~-~~~~~~~~~~~~~~~sst~~~~~~~~~~~Y~~g~~~g~~~~D~v~ig~ 79 (109)
T cd05470 1 IEIGIGTPPQTFNVLLDTGSSNLWVPSVDCQ-SLAIYSHSSYDDPSASSTYSDNGCTFSITYGTGSLSGGLSTDTVSIGD 79 (109)
T ss_pred CEEEeCCCCceEEEEEeCCCCCEEEeCCCCC-CcccccccccCCcCCCCCCCCCCcEEEEEeCCCeEEEEEEEEEEEECC
Confidence 4799999999999999999999999999987 3344455666 9999999999999999999999999999999999999
Q ss_pred eeecCcEEEEEEecCCccccccccceeecc
Q 018462 161 MIIKDQEFVEVTKEGLLPFLALQFDGILGL 190 (355)
Q Consensus 161 ~~~~~~~fg~~~~~~~~~~~~~~~~GilGL 190 (355)
..++++.||++....+..+.....+|||||
T Consensus 80 ~~~~~~~fg~~~~~~~~~~~~~~~~GilGL 109 (109)
T cd05470 80 IEVVGQAFGCATDEPGATFLPALFDGILGL 109 (109)
T ss_pred EEECCEEEEEEEecCCccccccccccccCC
Confidence 999999999999886644445678999998
No 25
>PF14543 TAXi_N: Xylanase inhibitor N-terminal; PDB: 3HD8_A 3VLB_A 3VLA_A 3AUP_D 1T6G_A 1T6E_X 2B42_A.
Probab=99.90 E-value=1.3e-22 Score=170.62 Aligned_cols=136 Identities=35% Similarity=0.553 Sum_probs=106.7
Q ss_pred EEEEEEEcCCCcEEEEEEeCCCCceeEeCCCCCCCcccCCCCcccCCCCcceeecC----------------------ce
Q 018462 80 YYGEIGIGSPPQSFSVVFDTGSSNLWVPSSKCLFSISCYLHSRYRARLSRTYTKIG----------------------VP 137 (355)
Q Consensus 80 y~~~i~iGtP~q~~~v~~DTGS~~~wv~~~~C~~~~~C~~~~~y~~~~Sst~~~~~----------------------~~ 137 (355)
|+++|.||||+|++.|++||||+.+|++| ..+.|+|.+|+||+... |.
T Consensus 1 Y~~~~~iGtP~~~~~lvvDtgs~l~W~~C----------~~~~f~~~~Sst~~~v~C~s~~C~~~~~~~~~~~~~~~~C~ 70 (164)
T PF14543_consen 1 YYVSVSIGTPPQPFSLVVDTGSDLTWVQC----------PDPPFDPSKSSTYRPVPCSSPQCSSAPSFCPCCCCSNNSCP 70 (164)
T ss_dssp EEEEEECTCTTEEEEEEEETT-SSEEEET--------------STT-TTSSBEC-BTTSHHHHHCTSSBTCCTCESSEEE
T ss_pred CEEEEEeCCCCceEEEEEECCCCceEEcC----------CCcccCCccCCcccccCCCCcchhhcccccccCCCCcCccc
Confidence 89999999999999999999999999976 35788888888887632 58
Q ss_pred EEEEeCCcc-EEEeEEEeeeeeeee-----eecCcEEEEEEecCCccccccccceeeccccccccCCCCCchhHHHHHcC
Q 018462 138 CKIHYGSGQ-ISGFFSQDNVKIGDM-----IIKDQEFVEVTKEGLLPFLALQFDGILGLGFRDIAAGNATPLWYNMVRQG 211 (355)
Q Consensus 138 ~~~~Y~~g~-~~G~~~~D~v~ig~~-----~~~~~~fg~~~~~~~~~~~~~~~~GilGLg~~~~s~~~~~~~~~~l~~~g 211 (355)
+.+.|++++ +.|.+++|+++++.. .+.++.|||+....+.. ...+||||||+...+ ++.||.++
T Consensus 71 y~~~y~~~s~~~G~l~~D~~~~~~~~~~~~~~~~~~FGC~~~~~g~~---~~~~GilGLg~~~~S------l~sQl~~~- 140 (164)
T PF14543_consen 71 YSQSYGDGSSSSGFLASDTLTFGSSSGGSNSVPDFIFGCATSNSGLF---YGADGILGLGRGPLS------LPSQLASS- 140 (164)
T ss_dssp EEEEETTTEEEEEEEEEEEEEEEEESSSSEEEEEEEEEEE-GGGTSS---TTEEEEEE-SSSTTS------HHHHHHHH-
T ss_pred ceeecCCCccccCceEEEEEEecCCCCCCceeeeEEEEeeeccccCC---cCCCcccccCCCccc------HHHHHHHh-
Confidence 999999987 789999999999874 57789999998876432 277999999998887 88999888
Q ss_pred CCCccEEEEEecCCCCCCcccEEEECC
Q 018462 212 HISQKIFSLWLNQDPNSEVGGEIIFGG 238 (355)
Q Consensus 212 ~i~~~~fs~~l~~~~~~~~~G~l~~Gg 238 (355)
..++||+||.+ .+....|.|+||+
T Consensus 141 --~~~~FSyCL~~-~~~~~~g~l~fG~ 164 (164)
T PF14543_consen 141 --SGNKFSYCLPS-SSPSSSGFLSFGD 164 (164)
T ss_dssp ----SEEEEEB-S--SSSSEEEEEECS
T ss_pred --cCCeEEEECCC-CCCCCCEEEEeCc
Confidence 57899999998 2234589999995
No 26
>cd05483 retropepsin_like_bacteria Bacterial aspartate proteases, retropepsin-like protease family. This family of bacteria aspartate proteases is a subfamily of retropepsin-like protease family, which includes enzymes from retrovirus and retrotransposons. While fungal and mammalian pepsin-like aspartate proteases are bilobal proteins with structurally related N- and C-termini, this family of bacteria aspartate proteases is half as long as their fungal and mammalian counterparts. The monomers are structurally related to one lobe of the pepsin molecule and function as homodimers. The active site aspartate occurs within a motif (Asp-Thr/Ser-Gly), as it does in pepsin. In aspartate peptidases, Asp residues are ligands of an activated water molecule in all examples where catalytic residues have been identified. This group of aspartate proteases is classified by MEROPS as the peptidase family A2 (retropepsin family, clan AA), subfamily A2A.
Probab=98.31 E-value=2e-06 Score=64.98 Aligned_cols=92 Identities=20% Similarity=0.361 Sum_probs=65.9
Q ss_pred eEEEEEEEcCCCcEEEEEEeCCCCceeEeCCCCCCCcccCCCCcccCCCCcceeecCceEEEEeCCcc-EEEeEEEeeee
Q 018462 79 QYYGEIGIGSPPQSFSVVFDTGSSNLWVPSSKCLFSISCYLHSRYRARLSRTYTKIGVPCKIHYGSGQ-ISGFFSQDNVK 157 (355)
Q Consensus 79 ~y~~~i~iGtP~q~~~v~~DTGS~~~wv~~~~C~~~~~C~~~~~y~~~~Sst~~~~~~~~~~~Y~~g~-~~G~~~~D~v~ 157 (355)
.|++++.|+. +++++++|||++.+|+...... .+. . + ........+...+|. .......+.++
T Consensus 2 ~~~v~v~i~~--~~~~~llDTGa~~s~i~~~~~~---~l~---~--~------~~~~~~~~~~~~~G~~~~~~~~~~~i~ 65 (96)
T cd05483 2 HFVVPVTING--QPVRFLLDTGASTTVISEELAE---RLG---L--P------LTLGGKVTVQTANGRVRAARVRLDSLQ 65 (96)
T ss_pred cEEEEEEECC--EEEEEEEECCCCcEEcCHHHHH---HcC---C--C------ccCCCcEEEEecCCCccceEEEcceEE
Confidence 5899999994 9999999999999999764321 111 0 0 112335566777777 34556688999
Q ss_pred eeeeeecCcEEEEEEecCCccccccccceeecccc
Q 018462 158 IGDMIIKDQEFVEVTKEGLLPFLALQFDGILGLGF 192 (355)
Q Consensus 158 ig~~~~~~~~fg~~~~~~~~~~~~~~~~GilGLg~ 192 (355)
+|+..++++.+........ +.+||||+.+
T Consensus 66 ig~~~~~~~~~~v~d~~~~------~~~gIlG~d~ 94 (96)
T cd05483 66 IGGITLRNVPAVVLPGDAL------GVDGLLGMDF 94 (96)
T ss_pred ECCcEEeccEEEEeCCccc------CCceEeChHH
Confidence 9999999998877754321 4699999864
No 27
>PF14541 TAXi_C: Xylanase inhibitor C-terminal; PDB: 3AUP_D 3HD8_A 1T6G_A 1T6E_X 2B42_A 3VLB_A 3VLA_A.
Probab=98.00 E-value=1.2e-05 Score=67.27 Aligned_cols=77 Identities=16% Similarity=0.255 Sum_probs=56.3
Q ss_pred eeEEEEeeEEEcCeEeEeecC-------CeeEEEccCccCcccCHHHHHHHHHHhCCC----c-------------eEEE
Q 018462 258 YWQIKVGDILIENSSTGFCED-------GCTAILDSGTSVLAGPTTVVAQINHAIGAE----G-------------IVSM 313 (355)
Q Consensus 258 ~w~v~~~~i~vg~~~~~~~~~-------~~~aiiDTGt~~i~lP~~~~~~i~~~i~~~----~-------------~~~v 313 (355)
+|.|++.+|+||++.+.+... ...++|||||++++||+++|+++.+++... + =|..
T Consensus 1 ~Y~v~l~~Isvg~~~l~~~~~~~~~~~~~g~~iiDSGT~~T~L~~~~y~~l~~al~~~~~~~~~~~~~~~~~~~~~Cy~~ 80 (161)
T PF14541_consen 1 FYYVNLTGISVGGKRLPIPPSVFQLSDGSGGTIIDSGTTYTYLPPPVYDALVQALDAQMGAPGVSREAPPFSGFDLCYNL 80 (161)
T ss_dssp SEEEEEEEEEETTEEE---TTCSCETTSTCSEEE-SSSSSEEEEHHHHHHHHHHHHHHHHTCT--CEE---TT-S-EEEG
T ss_pred CccEEEEEEEECCEEecCChHHhhccCCCCCEEEECCCCccCCcHHHHHHHHHHHHHHhhhcccccccccCCCCCceeec
Confidence 589999999999999876543 367999999999999999999999988321 1 1333
Q ss_pred eC-----C-----ceecccC-CEEEEEecCCc
Q 018462 314 QC-----K-----TVVFEYG-NMIWEFLISGV 334 (355)
Q Consensus 314 ~C-----~-----~i~~~fg-~~~~~~~~~~~ 334 (355)
+- . ++.++|. |..+++++.++
T Consensus 81 ~~~~~~~~~~~~P~i~l~F~~ga~l~l~~~~y 112 (161)
T PF14541_consen 81 SSFGVNRDWAKFPTITLHFEGGADLTLPPENY 112 (161)
T ss_dssp GCS-EETTEESS--EEEEETTSEEEEE-HHHH
T ss_pred cccccccccccCCeEEEEEeCCcceeeeccce
Confidence 33 1 4778886 88999999887
No 28
>TIGR02281 clan_AA_DTGA clan AA aspartic protease, TIGR02281 family. This family consists of predicted aspartic proteases, typically from 180 to 230 amino acids in length, in MEROPS clan AA. This model describes the well-conserved 121-residue C-terminal region. The poorly conserved, variable length N-terminal region usually contains a predicted transmembrane helix. Sequences in the seed alignment and those scoring above the trusted cutoff are Proteobacterial; homologs scroing between trusted and noise are found in Pyrobaculum aerophilum str. IM2 (archaeal), Pirellula sp. (Planctomycetes), and Nostoc sp. PCC 7120 (Cyanobacteria).
Probab=97.69 E-value=0.00034 Score=55.51 Aligned_cols=101 Identities=19% Similarity=0.366 Sum_probs=67.6
Q ss_pred EeceecCCceEEEEEEEcCCCcEEEEEEeCCCCceeEeCCCCCCCcccCCCCcccCCCCcceeecCceEEEEeCCccEE-
Q 018462 70 VYLNNYLDAQYYGEIGIGSPPQSFSVVFDTGSSNLWVPSSKCLFSISCYLHSRYRARLSRTYTKIGVPCKIHYGSGQIS- 148 (355)
Q Consensus 70 ~~l~~~~~~~y~~~i~iGtP~q~~~v~~DTGS~~~wv~~~~C~~~~~C~~~~~y~~~~Sst~~~~~~~~~~~Y~~g~~~- 148 (355)
+++....++.|++++.|.. +++.+++|||++.+.++..--. .-..++. .......+.=+.|...
T Consensus 2 ~~i~~~~~g~~~v~~~InG--~~~~flVDTGAs~t~is~~~A~-------~Lgl~~~------~~~~~~~~~ta~G~~~~ 66 (121)
T TIGR02281 2 VQLAKDGDGHFYATGRVNG--RNVRFLVDTGATSVALNEEDAQ-------RLGLDLN------RLGYTVTVSTANGQIKA 66 (121)
T ss_pred EEEEEcCCCeEEEEEEECC--EEEEEEEECCCCcEEcCHHHHH-------HcCCCcc------cCCceEEEEeCCCcEEE
Confidence 4566667899999999976 8999999999999988543211 0011111 1122344444566644
Q ss_pred EeEEEeeeeeeeeeecCcEEEEEEecCCccccccccceeecccc
Q 018462 149 GFFSQDNVKIGDMIIKDQEFVEVTKEGLLPFLALQFDGILGLGF 192 (355)
Q Consensus 149 G~~~~D~v~ig~~~~~~~~fg~~~~~~~~~~~~~~~~GilGLg~ 192 (355)
..+.-|++.+|+..+.|..+.+..... ..+|+||+.+
T Consensus 67 ~~~~l~~l~iG~~~~~nv~~~v~~~~~-------~~~~LLGm~f 103 (121)
T TIGR02281 67 ARVTLDRVAIGGIVVNDVDAMVAEGGA-------LSESLLGMSF 103 (121)
T ss_pred EEEEeCEEEECCEEEeCcEEEEeCCCc-------CCceEcCHHH
Confidence 446889999999999999976664221 1279999974
No 29
>PF13650 Asp_protease_2: Aspartyl protease
Probab=97.03 E-value=0.004 Score=46.03 Aligned_cols=87 Identities=24% Similarity=0.357 Sum_probs=53.3
Q ss_pred EEEEcCCCcEEEEEEeCCCCceeEeCCCCCCCcccCCCCcccCCCCcceeecCceEEEEeCCccE-EEeEEEeeeeeeee
Q 018462 83 EIGIGSPPQSFSVVFDTGSSNLWVPSSKCLFSISCYLHSRYRARLSRTYTKIGVPCKIHYGSGQI-SGFFSQDNVKIGDM 161 (355)
Q Consensus 83 ~i~iGtP~q~~~v~~DTGS~~~wv~~~~C~~~~~C~~~~~y~~~~Sst~~~~~~~~~~~Y~~g~~-~G~~~~D~v~ig~~ 161 (355)
++.|+. +++++++|||++.+.+....+. .. ...+.. ......+.-.+|.. ......+.+++|+.
T Consensus 2 ~v~vng--~~~~~liDTGa~~~~i~~~~~~------~l-~~~~~~------~~~~~~~~~~~g~~~~~~~~~~~i~ig~~ 66 (90)
T PF13650_consen 2 PVKVNG--KPVRFLIDTGASISVISRSLAK------KL-GLKPRP------KSVPISVSGAGGSVTVYRGRVDSITIGGI 66 (90)
T ss_pred EEEECC--EEEEEEEcCCCCcEEECHHHHH------Hc-CCCCcC------CceeEEEEeCCCCEEEEEEEEEEEEECCE
Confidence 567775 8999999999998887644332 00 011110 11123333445553 34456668999998
Q ss_pred eecCcEEEEEEecCCccccccccceeeccc
Q 018462 162 IIKDQEFVEVTKEGLLPFLALQFDGILGLG 191 (355)
Q Consensus 162 ~~~~~~fg~~~~~~~~~~~~~~~~GilGLg 191 (355)
.+.+..|.... .....+||||+-
T Consensus 67 ~~~~~~~~v~~-------~~~~~~~iLG~d 89 (90)
T PF13650_consen 67 TLKNVPFLVVD-------LGDPIDGILGMD 89 (90)
T ss_pred EEEeEEEEEEC-------CCCCCEEEeCCc
Confidence 88888876665 123458999974
No 30
>COG3577 Predicted aspartyl protease [General function prediction only]
Probab=96.45 E-value=0.018 Score=48.94 Aligned_cols=89 Identities=13% Similarity=0.221 Sum_probs=66.3
Q ss_pred CceeEeceecCCceEEEEEEEcCCCcEEEEEEeCCCCceeEeCCCCCCCcccCCCCcccCCCCcceeecCceEEEEeCCc
Q 018462 66 KADVVYLNNYLDAQYYGEIGIGSPPQSFSVVFDTGSSNLWVPSSKCLFSISCYLHSRYRARLSRTYTKIGVPCKIHYGSG 145 (355)
Q Consensus 66 ~~~~~~l~~~~~~~y~~~i~iGtP~q~~~v~~DTGS~~~wv~~~~C~~~~~C~~~~~y~~~~Sst~~~~~~~~~~~Y~~g 145 (355)
+...+.|....++.|.++..|-. |+++.++|||-+.+-+...... .--++.+ ..+.++.+.-++|
T Consensus 92 g~~~v~Lak~~~GHF~a~~~VNG--k~v~fLVDTGATsVal~~~dA~-------RlGid~~------~l~y~~~v~TANG 156 (215)
T COG3577 92 GYQEVSLAKSRDGHFEANGRVNG--KKVDFLVDTGATSVALNEEDAR-------RLGIDLN------SLDYTITVSTANG 156 (215)
T ss_pred CceEEEEEecCCCcEEEEEEECC--EEEEEEEecCcceeecCHHHHH-------HhCCCcc------ccCCceEEEccCC
Confidence 45578899999999999999986 9999999999999888654321 1123332 2344566666788
Q ss_pred cEE-EeEEEeeeeeeeeeecCcEEE
Q 018462 146 QIS-GFFSQDNVKIGDMIIKDQEFV 169 (355)
Q Consensus 146 ~~~-G~~~~D~v~ig~~~~~~~~fg 169 (355)
... -.+-.|+|.||++.+.|+.=-
T Consensus 157 ~~~AA~V~Ld~v~IG~I~~~nV~A~ 181 (215)
T COG3577 157 RARAAPVTLDRVQIGGIRVKNVDAM 181 (215)
T ss_pred ccccceEEeeeEEEccEEEcCchhh
Confidence 865 457889999999999888733
No 31
>cd05479 RP_DDI RP_DDI; retropepsin-like domain of DNA damage inducible protein. The family represents the retropepsin-like domain of DNA damage inducible protein. DNA damage inducible protein has a retropepsin-like domain and an amino-terminal ubiquitin-like domain and/or a UBA (ubiquitin-associated) domain. This CD represents the retropepsin-like domain of DDI.
Probab=96.18 E-value=0.035 Score=44.15 Aligned_cols=92 Identities=21% Similarity=0.304 Sum_probs=58.0
Q ss_pred CCceEEEEEEEcCCCcEEEEEEeCCCCceeEeCCCCCCCcccCCCCcccCCCCcceeecCceEE-EEeCCcc--EEEeEE
Q 018462 76 LDAQYYGEIGIGSPPQSFSVVFDTGSSNLWVPSSKCLFSISCYLHSRYRARLSRTYTKIGVPCK-IHYGSGQ--ISGFFS 152 (355)
Q Consensus 76 ~~~~y~~~i~iGtP~q~~~v~~DTGS~~~wv~~~~C~~~~~C~~~~~y~~~~Sst~~~~~~~~~-~~Y~~g~--~~G~~~ 152 (355)
....+++++.|+. +++++++|||++..++...-+. .+.-. ... ...+. ...+.|. ..|...
T Consensus 13 ~~~~~~v~~~Ing--~~~~~LvDTGAs~s~Is~~~a~---~lgl~----~~~-------~~~~~~~~~g~g~~~~~g~~~ 76 (124)
T cd05479 13 KVPMLYINVEING--VPVKAFVDSGAQMTIMSKACAE---KCGLM----RLI-------DKRFQGIAKGVGTQKILGRIH 76 (124)
T ss_pred eeeEEEEEEEECC--EEEEEEEeCCCceEEeCHHHHH---HcCCc----ccc-------CcceEEEEecCCCcEEEeEEE
Confidence 4567899999986 8999999999999988644322 11110 000 11121 1223232 457777
Q ss_pred EeeeeeeeeeecCcEEEEEEecCCccccccccceeecccc
Q 018462 153 QDNVKIGDMIIKDQEFVEVTKEGLLPFLALQFDGILGLGF 192 (355)
Q Consensus 153 ~D~v~ig~~~~~~~~fg~~~~~~~~~~~~~~~~GilGLg~ 192 (355)
.+.+.+++...+ ..|.+... ...|+|||+-+
T Consensus 77 ~~~l~i~~~~~~-~~~~Vl~~--------~~~d~ILG~d~ 107 (124)
T cd05479 77 LAQVKIGNLFLP-CSFTVLED--------DDVDFLIGLDM 107 (124)
T ss_pred EEEEEECCEEee-eEEEEECC--------CCcCEEecHHH
Confidence 788999998765 66655532 14599999974
No 32
>PF11925 DUF3443: Protein of unknown function (DUF3443); InterPro: IPR021847 This family of proteins are functionally uncharacterised. This protein is found in bacteria. Proteins in this family are typically between 400 to 434 amino acids in length. This protein has two conserved sequence motifs: NPV and DNNG.
Probab=96.13 E-value=0.083 Score=49.19 Aligned_cols=197 Identities=17% Similarity=0.217 Sum_probs=102.5
Q ss_pred EEEEEEE---cCCC-cEEE-EEEeCCCCceeEeCCCCCCCcccCCCCcccCCCCcceeecCceEEEEeCCccEEEeEEEe
Q 018462 80 YYGEIGI---GSPP-QSFS-VVFDTGSSNLWVPSSKCLFSISCYLHSRYRARLSRTYTKIGVPCKIHYGSGQISGFFSQD 154 (355)
Q Consensus 80 y~~~i~i---GtP~-q~~~-v~~DTGS~~~wv~~~~C~~~~~C~~~~~y~~~~Sst~~~~~~~~~~~Y~~g~~~G~~~~D 154 (355)
-++.|+| ||-. |++. |+|||||.-+=|..+.-... ..+......+.. ..-.-...|++|..=|.+.+-
T Consensus 24 p~VsVtVC~PGts~CqTIdnvlVDTGS~GLRi~~sAl~~~----l~~~Lp~~t~~g---~~laEC~~F~sgytWGsVr~A 96 (370)
T PF11925_consen 24 PTVSVTVCAPGTSNCQTIDNVLVDTGSYGLRIFASALPSS----LAGSLPQQTGGG---APLAECAQFASGYTWGSVRTA 96 (370)
T ss_pred eeeEEEEeCCCCCCceeeCcEEEeccchhhhHHHhhhchh----hhccCCcccCCC---cchhhhhhccCcccccceEEE
Confidence 3455555 4422 5665 99999999887755432100 000111111111 001112467777777889999
Q ss_pred eeeeeeeeecCcEEEEEEecC-----------C---ccccccccceeeccccccccC----------------CCC---C
Q 018462 155 NVKIGDMIIKDQEFVEVTKEG-----------L---LPFLALQFDGILGLGFRDIAA----------------GNA---T 201 (355)
Q Consensus 155 ~v~ig~~~~~~~~fg~~~~~~-----------~---~~~~~~~~~GilGLg~~~~s~----------------~~~---~ 201 (355)
.|+|++....+..+.++.+.. + ........+||||+|.-.... ... .
T Consensus 97 dV~igge~A~~iPiQvI~D~~~~~~P~sC~~~g~~~~t~~~lgaNGILGIg~~~~DcG~~C~~sa~~~~YY~C~~~~sCt 176 (370)
T PF11925_consen 97 DVTIGGETASSIPIQVIGDSAAPSVPSSCSNSGASMNTVADLGANGILGIGPFPYDCGAACAQSALPGNYYSCPSGGSCT 176 (370)
T ss_pred EEEEcCeeccccCEEEEcCCCCCCCCchhhcCCCCCCCcccccCceEEeecCCccccCchhhcccCCCceEECCCCCCee
Confidence 999999876667666664421 0 011234679999998643211 000 0
Q ss_pred chhHHHHHcCCCCccEEEEEecCC------------CCCCcccEEEECCcCCC---CcccceEEEeccCcceeEEEEeeE
Q 018462 202 PLWYNMVRQGHISQKIFSLWLNQD------------PNSEVGGEIIFGGFDWR---HFRGSHIYVPITEKGYWQIKVGDI 266 (355)
Q Consensus 202 ~~~~~l~~~g~i~~~~fs~~l~~~------------~~~~~~G~l~~Gg~d~~---~~~g~l~~~p~~~~~~w~v~~~~i 266 (355)
+.-..+-+| +..|+..|-.+.+ ......|.|+|| |++. ...+........+.++..-
T Consensus 177 ~t~v~~~~Q--V~NPV~~Fa~DNNGvii~lP~v~~~Ga~SatG~LiFG-IgTQsNN~l~~~~~~~~~~~~G~~tt----- 248 (370)
T PF11925_consen 177 STTVPLAQQ--VANPVARFATDNNGVIIQLPAVSASGAASATGTLIFG-IGTQSNNALPSGATVLTTDSNGDFTT----- 248 (370)
T ss_pred cccchhhhc--ccCcccccCccCCeEEEecCCCCCCCCccceEEEEEe-cCCcccCcccccceEEeecCCceEEE-----
Confidence 011112222 4455554432221 123458999998 3322 1233345555555555322
Q ss_pred EEcCeEeEeecCCeeEEEccCccCcccCHHH
Q 018462 267 LIENSSTGFCEDGCTAILDSGTSVLAGPTTV 297 (355)
Q Consensus 267 ~vg~~~~~~~~~~~~aiiDTGt~~i~lP~~~ 297 (355)
..+|+.. ....||||+.-.++|...
T Consensus 249 ~~~G~t~------~~sf~DSGSNg~fF~d~~ 273 (370)
T PF11925_consen 249 TFNGQTY------SASFFDSGSNGYFFPDSS 273 (370)
T ss_pred EecCcee------eeeeEecCCceeeccCCC
Confidence 2344433 234999999999988553
No 33
>cd05484 retropepsin_like_LTR_2 Retropepsins_like_LTR, pepsin-like aspartate proteases. Retropepsin of retrotransposons with long terminal repeats are pepsin-like aspartate proteases. While fungal and mammalian pepsins are bilobal proteins with structurally related N- and C-termini, retropepsins are half as long as their fungal and mammalian counterparts. The monomers are structurally related to one lobe of the pepsin molecule and retropepsins function as homodimers. The active site aspartate occurs within a motif (Asp-Thr/Ser-Gly), as it does in pepsin. Retroviral aspartyl protease is synthesized as part of the POL polyprotein that contains an aspartyl protease, a reverse transcriptase, RNase H, and an integrase. The POL polyprotein undergoes specific enzymatic cleavage to yield the mature proteins. In aspartate peptidases, Asp residues are ligands of an activated water molecule in all examples where catalytic residues have been identified. This group of aspartate peptidases is classif
Probab=94.96 E-value=0.12 Score=38.40 Aligned_cols=75 Identities=13% Similarity=0.072 Sum_probs=47.0
Q ss_pred EEEEEEEcCCCcEEEEEEeCCCCceeEeCCCCCCCcccCCCCcccCCCCcceeecCceEEEEeCCcc---EEEeEEEeee
Q 018462 80 YYGEIGIGSPPQSFSVVFDTGSSNLWVPSSKCLFSISCYLHSRYRARLSRTYTKIGVPCKIHYGSGQ---ISGFFSQDNV 156 (355)
Q Consensus 80 y~~~i~iGtP~q~~~v~~DTGS~~~wv~~~~C~~~~~C~~~~~y~~~~Sst~~~~~~~~~~~Y~~g~---~~G~~~~D~v 156 (355)
|++++.|+. +++.+++||||+..++..+.+. ....+. .......+.=.+|. ..|.+ .+.+
T Consensus 1 ~~~~~~Ing--~~i~~lvDTGA~~svis~~~~~--------~lg~~~------~~~~~~~v~~a~G~~~~~~G~~-~~~v 63 (91)
T cd05484 1 KTVTLLVNG--KPLKFQLDTGSAITVISEKTWR--------KLGSPP------LKPTKKRLRTATGTKLSVLGQI-LVTV 63 (91)
T ss_pred CEEEEEECC--EEEEEEEcCCcceEEeCHHHHH--------HhCCCc------cccccEEEEecCCCEeeEeEEE-EEEE
Confidence 467889986 9999999999999999765432 011110 11223344444554 35766 7889
Q ss_pred eeeeeeecCcEEEEEE
Q 018462 157 KIGDMIIKDQEFVEVT 172 (355)
Q Consensus 157 ~ig~~~~~~~~fg~~~ 172 (355)
++++.+. ...|-+..
T Consensus 64 ~~~~~~~-~~~~~v~~ 78 (91)
T cd05484 64 KYGGKTK-VLTLYVVK 78 (91)
T ss_pred EECCEEE-EEEEEEEE
Confidence 9998764 35554443
No 34
>cd06095 RP_RTVL_H_like Retropepsin of the RTVL_H family of human endogenous retrovirus-like elements. This family includes aspartate proteases from retroelements with LTR (long terminal repeats) including the RTVL_H family of human endogenous retrovirus-like elements. While fungal and mammalian pepsins are bilobal proteins with structurally related N- and C-termini, retropepsins are half as long as their fungal and mammalian counterparts. The monomers are structurally related to one lobe of the pepsin molecule and retropepsins function as homodimers. The active site aspartate occurs within a motif (Asp-Thr/Ser-Gly), as it does in pepsin. Retroviral aspartyl protease is synthesized as part of the POL polyprotein that contains an aspartyl protease, a reverse transcriptase, RNase H, and an integrase. The POL polyprotein undergoes specific enzymatic cleavage to yield the mature proteins. In aspartate peptidases, Asp residues are ligands of an activated water molecule in all examples where
Probab=92.63 E-value=0.74 Score=33.82 Aligned_cols=80 Identities=20% Similarity=0.156 Sum_probs=46.0
Q ss_pred EEEcCCCcEEEEEEeCCCCceeEeCCCCCCCcccCCCCcccCCCCcceeecCceEEEEeCCccEEEeE-EEe-eeeeeee
Q 018462 84 IGIGSPPQSFSVVFDTGSSNLWVPSSKCLFSISCYLHSRYRARLSRTYTKIGVPCKIHYGSGQISGFF-SQD-NVKIGDM 161 (355)
Q Consensus 84 i~iGtP~q~~~v~~DTGS~~~wv~~~~C~~~~~C~~~~~y~~~~Sst~~~~~~~~~~~Y~~g~~~G~~-~~D-~v~ig~~ 161 (355)
+.|.. +++++++|||++.+-+....+.. + . ...+...+.=..|...-.+ ..+ .+.+|+.
T Consensus 3 v~InG--~~~~fLvDTGA~~tii~~~~a~~---~-----~---------~~~~~~~v~gagG~~~~~v~~~~~~v~vg~~ 63 (86)
T cd06095 3 ITVEG--VPIVFLVDTGATHSVLKSDLGPK---Q-----E---------LSTTSVLIRGVSGQSQQPVTTYRTLVDLGGH 63 (86)
T ss_pred EEECC--EEEEEEEECCCCeEEECHHHhhh---c-----c---------CCCCcEEEEeCCCcccccEEEeeeEEEECCE
Confidence 45554 89999999999999997654430 0 0 1122333333333321111 123 6999998
Q ss_pred eecCcEEEEEEecCCccccccccceeecccc
Q 018462 162 IIKDQEFVEVTKEGLLPFLALQFDGILGLGF 192 (355)
Q Consensus 162 ~~~~~~fg~~~~~~~~~~~~~~~~GilGLg~ 192 (355)
...++ |...... .++|||+.+
T Consensus 64 ~~~~~-~~v~~~~---------~~~lLG~df 84 (86)
T cd06095 64 TVSHS-FLVVPNC---------PDPLLGRDL 84 (86)
T ss_pred EEEEE-EEEEcCC---------CCcEechhh
Confidence 88754 4444221 278999864
No 35
>PF07966 A1_Propeptide: A1 Propeptide ; InterPro: IPR012848 Most eukaryotic endopeptidases (MEROPS peptidase family A1) are synthesised with signal and propeptides. The animal pepsin-like endopeptidase propeptides form a distinct family of propeptides, which contain a conserved motif approximately 30 residues long. In pepsinogen A, the first 11 residues of the mature pepsin sequence are displaced by residues of the propeptide. The propeptide contains two helices that block the active site cleft, in particular the conserved Asp11 residue, in pepsin, hydrogen bonds to a conserved Arg residue in the propeptide. This hydrogen bond stabilises the propeptide conformation and is probably responsible for triggering the conversion of pepsinogen to pepsin under acidic conditions [, ]. ; GO: 0004190 aspartic-type endopeptidase activity, 0006508 proteolysis; PDB: 1AVF_Q 1HTR_P 3PSG_A 2PSG_A 3VCM_Q 1TZS_P.
Probab=89.92 E-value=0.38 Score=27.59 Aligned_cols=24 Identities=29% Similarity=0.317 Sum_probs=16.2
Q ss_pred eEEEeeeeeechhhhHHhhhhhhh
Q 018462 32 LLRIQLKKRQLGINTINAARLITK 55 (355)
Q Consensus 32 ~~~ipl~~~~~~~~~~~~~~~~~~ 55 (355)
++||||+|.++.|..+++.+...+
T Consensus 1 l~rIPL~K~kS~R~~L~e~g~~~~ 24 (29)
T PF07966_consen 1 LVRIPLKKFKSMRETLREKGTLEE 24 (29)
T ss_dssp -EEEEEEE---HHHHHHHTT-HHH
T ss_pred CEEEeccCCchHHHHHHHcCchHH
Confidence 479999999999999988776544
No 36
>PF13975 gag-asp_proteas: gag-polyprotein putative aspartyl protease
Probab=88.85 E-value=0.86 Score=32.28 Aligned_cols=34 Identities=21% Similarity=0.353 Sum_probs=29.5
Q ss_pred CCceEEEEEEEcCCCcEEEEEEeCCCCceeEeCCCC
Q 018462 76 LDAQYYGEIGIGSPPQSFSVVFDTGSSNLWVPSSKC 111 (355)
Q Consensus 76 ~~~~y~~~i~iGtP~q~~~v~~DTGS~~~wv~~~~C 111 (355)
..+.+++++.||. +.+..++|||++..+++.+.+
T Consensus 5 ~~g~~~v~~~I~g--~~~~alvDtGat~~fis~~~a 38 (72)
T PF13975_consen 5 DPGLMYVPVSIGG--VQVKALVDTGATHNFISESLA 38 (72)
T ss_pred cCCEEEEEEEECC--EEEEEEEeCCCcceecCHHHH
Confidence 4578999999998 999999999999998876544
No 37
>TIGR02281 clan_AA_DTGA clan AA aspartic protease, TIGR02281 family. This family consists of predicted aspartic proteases, typically from 180 to 230 amino acids in length, in MEROPS clan AA. This model describes the well-conserved 121-residue C-terminal region. The poorly conserved, variable length N-terminal region usually contains a predicted transmembrane helix. Sequences in the seed alignment and those scoring above the trusted cutoff are Proteobacterial; homologs scroing between trusted and noise are found in Pyrobaculum aerophilum str. IM2 (archaeal), Pirellula sp. (Planctomycetes), and Nostoc sp. PCC 7120 (Cyanobacteria).
Probab=86.77 E-value=1.7 Score=34.21 Aligned_cols=38 Identities=11% Similarity=0.178 Sum_probs=29.5
Q ss_pred CcceeEEEEeeEEEcCeEeEeecCCeeEEEccCccCcccCHHHHHHHH
Q 018462 255 EKGYWQIKVGDILIENSSTGFCEDGCTAILDSGTSVLAGPTTVVAQIN 302 (355)
Q Consensus 255 ~~~~w~v~~~~i~vg~~~~~~~~~~~~aiiDTGt~~i~lP~~~~~~i~ 302 (355)
..+++.++ +.|+|+. ..++||||.+.+.++.+..+.+-
T Consensus 8 ~~g~~~v~---~~InG~~-------~~flVDTGAs~t~is~~~A~~Lg 45 (121)
T TIGR02281 8 GDGHFYAT---GRVNGRN-------VRFLVDTGATSVALNEEDAQRLG 45 (121)
T ss_pred CCCeEEEE---EEECCEE-------EEEEEECCCCcEEcCHHHHHHcC
Confidence 34566555 5578774 37999999999999999998873
No 38
>PF13650 Asp_protease_2: Aspartyl protease
Probab=84.15 E-value=1.6 Score=31.73 Aligned_cols=31 Identities=10% Similarity=0.294 Sum_probs=25.0
Q ss_pred EEEcCeEeEeecCCeeEEEccCccCcccCHHHHHHHHH
Q 018462 266 ILIENSSTGFCEDGCTAILDSGTSVLAGPTTVVAQINH 303 (355)
Q Consensus 266 i~vg~~~~~~~~~~~~aiiDTGt~~i~lP~~~~~~i~~ 303 (355)
+.|+|++ ..++||||++.+.+++++++.+--
T Consensus 3 v~vng~~-------~~~liDTGa~~~~i~~~~~~~l~~ 33 (90)
T PF13650_consen 3 VKVNGKP-------VRFLIDTGASISVISRSLAKKLGL 33 (90)
T ss_pred EEECCEE-------EEEEEcCCCCcEEECHHHHHHcCC
Confidence 5566654 479999999999999999988743
No 39
>PF00077 RVP: Retroviral aspartyl protease The Prosite entry also includes Pfam:PF00026; InterPro: IPR018061 In the MEROPS database peptidases and peptidase homologues are grouped into clans and families. Clans are groups of families for which there is evidence of common ancestry based on a common structural fold: Each clan is identified with two letters, the first representing the catalytic type of the families included in the clan (with the letter 'P' being used for a clan containing families of more than one of the catalytic types serine, threonine and cysteine). Some families cannot yet be assigned to clans, and when a formal assignment is required, such a family is described as belonging to clan A-, C-, M-, N-, S-, T- or U-, according to the catalytic type. Some clans are divided into subclans because there is evidence of a very ancient divergence within the clan, for example MA(E), the gluzincins, and MA(M), the metzincins. Peptidase families are grouped by their catalytic type, the first character representing the catalytic type: A, aspartic; C, cysteine; G, glutamic acid; M, metallo; N, asparagine; S, serine; T, threonine; and U, unknown. The serine, threonine and cysteine peptidases utilise the amino acid as a nucleophile and form an acyl intermediate - these peptidases can also readily act as transferases. In the case of aspartic, glutamic and metallopeptidases, the nucleophile is an activated water molecule. In the case of the asparagine endopeptidases, the nucleophile is asparagine and all are self-processing endopeptidases. In many instances the structural protein fold that characterises the clan or family may have lost its catalytic activity, yet retain its function in protein recognition and binding. Aspartic endopeptidases 3.4.23. from EC of vertebrate, fungal and retroviral origin have been characterised []. More recently, aspartic endopeptidases associated with the processing of bacterial type 4 prepilin [] and archaean preflagellin have been described [, ]. Structurally, aspartic endopeptidases are bilobal enzymes, each lobe contributing a catalytic Asp residue, with an extended active site cleft localised between the two lobes of the molecule. One lobe has probably evolved from the other through a gene duplication event in the distant past. In modern-day enzymes, although the three-dimensional structures are very similar, the amino acid sequences are more divergent, except for the catalytic site motif, which is very conserved. The presence and position of disulphide bridges are other conserved features of aspartic peptidases. All or most aspartate peptidases are endopeptidases. These enzymes have been assigned into clans (proteins which are evolutionary related), and further sub-divided into families, largely on the basis of their tertiary structure. This group of aspartic peptidases belong to the MEROPS peptidase family A2 (retropepsin family, clan AA), subfamily A2A. The family includes the single domain aspartic proteases from retroviruses, retrotransposons, and badnaviruses (plant dsDNA viruses). Retroviral aspartyl protease is synthesised as part of the POL polyprotein that contains; an aspartyl protease, a reverse transcriptase, RNase H and integrase. POL polyprotein undergoes specific enzymatic cleavage to yield the mature proteins.; PDB: 3D3T_B 3SQF_A 1NSO_A 2HB3_A 2HS2_A 2HS1_B 3K4V_A 3GGV_C 1HTG_B 2FDE_A ....
Probab=83.70 E-value=1.9 Score=32.42 Aligned_cols=29 Identities=17% Similarity=0.337 Sum_probs=23.6
Q ss_pred EEEEEEcCCCcEEEEEEeCCCCceeEeCCCC
Q 018462 81 YGEIGIGSPPQSFSVVFDTGSSNLWVPSSKC 111 (355)
Q Consensus 81 ~~~i~iGtP~q~~~v~~DTGS~~~wv~~~~C 111 (355)
+.+|.|.. +++++++||||+...++...+
T Consensus 7 ~i~v~i~g--~~i~~LlDTGA~vsiI~~~~~ 35 (100)
T PF00077_consen 7 YITVKING--KKIKALLDTGADVSIISEKDW 35 (100)
T ss_dssp EEEEEETT--EEEEEEEETTBSSEEESSGGS
T ss_pred eEEEeECC--EEEEEEEecCCCcceeccccc
Confidence 45677776 899999999999998876544
No 40
>PF13975 gag-asp_proteas: gag-polyprotein putative aspartyl protease
Probab=82.77 E-value=2.5 Score=29.82 Aligned_cols=29 Identities=14% Similarity=0.250 Sum_probs=24.8
Q ss_pred EEEcCeEeEeecCCeeEEEccCccCcccCHHHHHHH
Q 018462 266 ILIENSSTGFCEDGCTAILDSGTSVLAGPTTVVAQI 301 (355)
Q Consensus 266 i~vg~~~~~~~~~~~~aiiDTGt~~i~lP~~~~~~i 301 (355)
+.|++..+ .+++|||++..+++.+..+.+
T Consensus 13 ~~I~g~~~-------~alvDtGat~~fis~~~a~rL 41 (72)
T PF13975_consen 13 VSIGGVQV-------KALVDTGATHNFISESLAKRL 41 (72)
T ss_pred EEECCEEE-------EEEEeCCCcceecCHHHHHHh
Confidence 56777654 599999999999999999888
No 41
>cd05484 retropepsin_like_LTR_2 Retropepsins_like_LTR, pepsin-like aspartate proteases. Retropepsin of retrotransposons with long terminal repeats are pepsin-like aspartate proteases. While fungal and mammalian pepsins are bilobal proteins with structurally related N- and C-termini, retropepsins are half as long as their fungal and mammalian counterparts. The monomers are structurally related to one lobe of the pepsin molecule and retropepsins function as homodimers. The active site aspartate occurs within a motif (Asp-Thr/Ser-Gly), as it does in pepsin. Retroviral aspartyl protease is synthesized as part of the POL polyprotein that contains an aspartyl protease, a reverse transcriptase, RNase H, and an integrase. The POL polyprotein undergoes specific enzymatic cleavage to yield the mature proteins. In aspartate peptidases, Asp residues are ligands of an activated water molecule in all examples where catalytic residues have been identified. This group of aspartate peptidases is classif
Probab=80.34 E-value=2.8 Score=30.96 Aligned_cols=32 Identities=13% Similarity=0.263 Sum_probs=26.4
Q ss_pred EEEcCeEeEeecCCeeEEEccCccCcccCHHHHHHHHHH
Q 018462 266 ILIENSSTGFCEDGCTAILDSGTSVLAGPTTVVAQINHA 304 (355)
Q Consensus 266 i~vg~~~~~~~~~~~~aiiDTGt~~i~lP~~~~~~i~~~ 304 (355)
+.|+|+.+ .+++|||++...++.+.+..+...
T Consensus 5 ~~Ing~~i-------~~lvDTGA~~svis~~~~~~lg~~ 36 (91)
T cd05484 5 LLVNGKPL-------KFQLDTGSAITVISEKTWRKLGSP 36 (91)
T ss_pred EEECCEEE-------EEEEcCCcceEEeCHHHHHHhCCC
Confidence 66778765 689999999999999999877543
No 42
>cd05483 retropepsin_like_bacteria Bacterial aspartate proteases, retropepsin-like protease family. This family of bacteria aspartate proteases is a subfamily of retropepsin-like protease family, which includes enzymes from retrovirus and retrotransposons. While fungal and mammalian pepsin-like aspartate proteases are bilobal proteins with structurally related N- and C-termini, this family of bacteria aspartate proteases is half as long as their fungal and mammalian counterparts. The monomers are structurally related to one lobe of the pepsin molecule and function as homodimers. The active site aspartate occurs within a motif (Asp-Thr/Ser-Gly), as it does in pepsin. In aspartate peptidases, Asp residues are ligands of an activated water molecule in all examples where catalytic residues have been identified. This group of aspartate proteases is classified by MEROPS as the peptidase family A2 (retropepsin family, clan AA), subfamily A2A.
Probab=78.01 E-value=3.8 Score=30.06 Aligned_cols=30 Identities=17% Similarity=0.320 Sum_probs=24.2
Q ss_pred EEEcCeEeEeecCCeeEEEccCccCcccCHHHHHHHH
Q 018462 266 ILIENSSTGFCEDGCTAILDSGTSVLAGPTTVVAQIN 302 (355)
Q Consensus 266 i~vg~~~~~~~~~~~~aiiDTGt~~i~lP~~~~~~i~ 302 (355)
+.++++. ..++||||++.++++.+..+.+.
T Consensus 7 v~i~~~~-------~~~llDTGa~~s~i~~~~~~~l~ 36 (96)
T cd05483 7 VTINGQP-------VRFLLDTGASTTVISEELAERLG 36 (96)
T ss_pred EEECCEE-------EEEEEECCCCcEEcCHHHHHHcC
Confidence 5567654 47999999999999999887764
No 43
>cd06095 RP_RTVL_H_like Retropepsin of the RTVL_H family of human endogenous retrovirus-like elements. This family includes aspartate proteases from retroelements with LTR (long terminal repeats) including the RTVL_H family of human endogenous retrovirus-like elements. While fungal and mammalian pepsins are bilobal proteins with structurally related N- and C-termini, retropepsins are half as long as their fungal and mammalian counterparts. The monomers are structurally related to one lobe of the pepsin molecule and retropepsins function as homodimers. The active site aspartate occurs within a motif (Asp-Thr/Ser-Gly), as it does in pepsin. Retroviral aspartyl protease is synthesized as part of the POL polyprotein that contains an aspartyl protease, a reverse transcriptase, RNase H, and an integrase. The POL polyprotein undergoes specific enzymatic cleavage to yield the mature proteins. In aspartate peptidases, Asp residues are ligands of an activated water molecule in all examples where
Probab=74.23 E-value=4.4 Score=29.65 Aligned_cols=29 Identities=14% Similarity=0.194 Sum_probs=24.3
Q ss_pred EEEcCeEeEeecCCeeEEEccCccCcccCHHHHHHH
Q 018462 266 ILIENSSTGFCEDGCTAILDSGTSVLAGPTTVVAQI 301 (355)
Q Consensus 266 i~vg~~~~~~~~~~~~aiiDTGt~~i~lP~~~~~~i 301 (355)
+.|||+.+ .+++|||.+.+.++++..+.+
T Consensus 3 v~InG~~~-------~fLvDTGA~~tii~~~~a~~~ 31 (86)
T cd06095 3 ITVEGVPI-------VFLVDTGATHSVLKSDLGPKQ 31 (86)
T ss_pred EEECCEEE-------EEEEECCCCeEEECHHHhhhc
Confidence 56777654 689999999999999999876
No 44
>PF09668 Asp_protease: Aspartyl protease; InterPro: IPR019103 In the MEROPS database peptidases and peptidase homologues are grouped into clans and families. Clans are groups of families for which there is evidence of common ancestry based on a common structural fold: Each clan is identified with two letters, the first representing the catalytic type of the families included in the clan (with the letter 'P' being used for a clan containing families of more than one of the catalytic types serine, threonine and cysteine). Some families cannot yet be assigned to clans, and when a formal assignment is required, such a family is described as belonging to clan A-, C-, M-, N-, S-, T- or U-, according to the catalytic type. Some clans are divided into subclans because there is evidence of a very ancient divergence within the clan, for example MA(E), the gluzincins, and MA(M), the metzincins. Peptidase families are grouped by their catalytic type, the first character representing the catalytic type: A, aspartic; C, cysteine; G, glutamic acid; M, metallo; N, asparagine; S, serine; T, threonine; and U, unknown. The serine, threonine and cysteine peptidases utilise the amino acid as a nucleophile and form an acyl intermediate - these peptidases can also readily act as transferases. In the case of aspartic, glutamic and metallopeptidases, the nucleophile is an activated water molecule. In the case of the asparagine endopeptidases, the nucleophile is asparagine and all are self-processing endopeptidases. In many instances the structural protein fold that characterises the clan or family may have lost its catalytic activity, yet retain its function in protein recognition and binding. Aspartic endopeptidases 3.4.23. from EC of vertebrate, fungal and retroviral origin have been characterised []. More recently, aspartic endopeptidases associated with the processing of bacterial type 4 prepilin [] and archaean preflagellin have been described [, ]. Structurally, aspartic endopeptidases are bilobal enzymes, each lobe contributing a catalytic Asp residue, with an extended active site cleft localised between the two lobes of the molecule. One lobe has probably evolved from the other through a gene duplication event in the distant past. In modern-day enzymes, although the three-dimensional structures are very similar, the amino acid sequences are more divergent, except for the catalytic site motif, which is very conserved. The presence and position of disulphide bridges are other conserved features of aspartic peptidases. All or most aspartate peptidases are endopeptidases. These enzymes have been assigned into clans (proteins which are evolutionary related), and further sub-divided into families, largely on the basis of their tertiary structure. This family of eukaryotic aspartyl proteases have a fold similar to retroviral proteases which implies they function proteolytically during regulated protein turnover []. ; GO: 0004190 aspartic-type endopeptidase activity, 0006508 proteolysis; PDB: 3S8I_A 2I1A_B.
Probab=73.18 E-value=8.1 Score=30.60 Aligned_cols=79 Identities=20% Similarity=0.240 Sum_probs=42.3
Q ss_pred CceEEEEEEEcCCCcEEEEEEeCCCCceeEeCCCCCCCcccCCCCcccCCCCcceeecCceEEEEeCCcc--EEEeEEEe
Q 018462 77 DAQYYGEIGIGSPPQSFSVVFDTGSSNLWVPSSKCLFSISCYLHSRYRARLSRTYTKIGVPCKIHYGSGQ--ISGFFSQD 154 (355)
Q Consensus 77 ~~~y~~~i~iGtP~q~~~v~~DTGS~~~wv~~~~C~~~~~C~~~~~y~~~~Sst~~~~~~~~~~~Y~~g~--~~G~~~~D 154 (355)
....|++++|+. ++++.++|||...+-+..+-+. .|.-.+.-+. ..-...+|-|+ +.|.+..=
T Consensus 22 v~mLyI~~~ing--~~vkA~VDtGAQ~tims~~~a~---r~gL~~lid~----------r~~g~a~GvG~~~i~G~Ih~~ 86 (124)
T PF09668_consen 22 VSMLYINCKING--VPVKAFVDTGAQSTIMSKSCAE---RCGLMRLIDK----------RFAGVAKGVGTQKILGRIHSV 86 (124)
T ss_dssp ----EEEEEETT--EEEEEEEETT-SS-EEEHHHHH---HTTGGGGEEG----------GG-EE-------EEEEEEEEE
T ss_pred cceEEEEEEECC--EEEEEEEeCCCCccccCHHHHH---HcCChhhccc----------cccccccCCCcCceeEEEEEE
Confidence 457899999997 9999999999998877543222 4442222211 11122344454 67888878
Q ss_pred eeeeeeeeecCcEEEEE
Q 018462 155 NVKIGDMIIKDQEFVEV 171 (355)
Q Consensus 155 ~v~ig~~~~~~~~fg~~ 171 (355)
.+.+|+..++ ..|-+.
T Consensus 87 ~l~ig~~~~~-~s~~Vl 102 (124)
T PF09668_consen 87 QLKIGGLFFP-CSFTVL 102 (124)
T ss_dssp EEEETTEEEE-EEEEEE
T ss_pred EEEECCEEEE-EEEEEe
Confidence 8888876554 444433
No 45
>cd05482 HIV_retropepsin_like Retropepsins, pepsin-like aspartate proteases. This is a subfamily of retropepsins. The family includes pepsin-like aspartate proteases from retroviruses, retrotransposons and retroelements. While fungal and mammalian pepsins are bilobal proteins with structurally related N- and C-termini, retropepsins are half as long as their fungal and mammalian counterparts. The monomers are structurally related to one lobe of the pepsin molecule and retropepsins function as homodimers. The active site aspartate occurs within a motif (Asp-Thr/Ser-Gly), as it does in pepsin. Retroviral aspartyl protease is synthesized as part of the POL polyprotein that contains an aspartyl protease, a reverse transcriptase, RNase H, and an integrase. The POL polyprotein undergoes specific enzymatic cleavage to yield the mature proteins. In aspartate peptidases, Asp residues are ligands of an activated water molecule in all examples where catalytic residues have been identified. This gro
Probab=71.49 E-value=7 Score=28.85 Aligned_cols=27 Identities=19% Similarity=0.297 Sum_probs=21.7
Q ss_pred EEEEcCCCcEEEEEEeCCCCceeEeCCCC
Q 018462 83 EIGIGSPPQSFSVVFDTGSSNLWVPSSKC 111 (355)
Q Consensus 83 ~i~iGtP~q~~~v~~DTGS~~~wv~~~~C 111 (355)
.+.|+. |.+++++|||+.++.+.....
T Consensus 2 ~~~i~g--~~~~~llDTGAd~Tvi~~~~~ 28 (87)
T cd05482 2 TLYING--KLFEGLLDTGADVSIIAENDW 28 (87)
T ss_pred EEEECC--EEEEEEEccCCCCeEEccccc
Confidence 356664 999999999999999976544
No 46
>cd05479 RP_DDI RP_DDI; retropepsin-like domain of DNA damage inducible protein. The family represents the retropepsin-like domain of DNA damage inducible protein. DNA damage inducible protein has a retropepsin-like domain and an amino-terminal ubiquitin-like domain and/or a UBA (ubiquitin-associated) domain. This CD represents the retropepsin-like domain of DDI.
Probab=70.82 E-value=6.2 Score=31.12 Aligned_cols=60 Identities=13% Similarity=0.169 Sum_probs=36.8
Q ss_pred EEEcCeEeEeecCCeeEEEccCccCcccCHHHHHHHHHHhCCC----------ce--EEEeCCceecccCCEEEEEecC
Q 018462 266 ILIENSSTGFCEDGCTAILDSGTSVLAGPTTVVAQINHAIGAE----------GI--VSMQCKTVVFEYGNMIWEFLIS 332 (355)
Q Consensus 266 i~vg~~~~~~~~~~~~aiiDTGt~~i~lP~~~~~~i~~~i~~~----------~~--~~v~C~~i~~~fg~~~~~~~~~ 332 (355)
+.|+|..+ .++||||++...++++..+.+-=..... |. ...-|.....++|+..++++..
T Consensus 21 ~~Ing~~~-------~~LvDTGAs~s~Is~~~a~~lgl~~~~~~~~~~~~~g~g~~~~~g~~~~~~l~i~~~~~~~~~~ 92 (124)
T cd05479 21 VEINGVPV-------KAFVDSGAQMTIMSKACAEKCGLMRLIDKRFQGIAKGVGTQKILGRIHLAQVKIGNLFLPCSFT 92 (124)
T ss_pred EEECCEEE-------EEEEeCCCceEEeCHHHHHHcCCccccCcceEEEEecCCCcEEEeEEEEEEEEECCEEeeeEEE
Confidence 45666653 6999999999999999988743221100 11 1112334456778887765443
No 47
>PF08284 RVP_2: Retroviral aspartyl protease; InterPro: IPR013242 This region defines single domain aspartyl proteases from retroviruses, retrotransposons, and badnaviruses (plant dsDNA viruses). These proteases are generally part of a larger polyprotein; usually pol, more rarely gag. Retroviral proteases appear to be homologous to a single domain of the two-domain eukaryotic aspartyl proteases.
Probab=67.85 E-value=43 Score=26.87 Aligned_cols=29 Identities=28% Similarity=0.389 Sum_probs=24.6
Q ss_pred ceEEEEEEEcCCCcEEEEEEeCCCCceeEeC
Q 018462 78 AQYYGEIGIGSPPQSFSVVFDTGSSNLWVPS 108 (355)
Q Consensus 78 ~~y~~~i~iGtP~q~~~v~~DTGS~~~wv~~ 108 (355)
..-.+.+.|.+ +...+++|+|++.-+|..
T Consensus 20 ~vi~g~~~I~~--~~~~vLiDSGAThsFIs~ 48 (135)
T PF08284_consen 20 DVITGTFLINS--IPASVLIDSGATHSFISS 48 (135)
T ss_pred CeEEEEEEecc--EEEEEEEecCCCcEEccH
Confidence 45677888987 999999999999988854
No 48
>PF07172 GRP: Glycine rich protein family; InterPro: IPR010800 This family consists of glycine rich proteins. Some of them may be involved in resistance to environmental stress [].
Probab=66.16 E-value=4.5 Score=30.39 Aligned_cols=21 Identities=19% Similarity=0.150 Sum_probs=10.2
Q ss_pred CCchhhhHHHHHHHHHHHhhc
Q 018462 1 MGIKFLLAAICMWVCPCILAS 21 (355)
Q Consensus 1 M~~~~~~~~l~~~~~l~~l~~ 21 (355)
|+.+..+++.++++++|.+.+
T Consensus 1 MaSK~~llL~l~LA~lLlisS 21 (95)
T PF07172_consen 1 MASKAFLLLGLLLAALLLISS 21 (95)
T ss_pred CchhHHHHHHHHHHHHHHHHh
Confidence 886654444444444343333
No 49
>PF00077 RVP: Retroviral aspartyl protease The Prosite entry also includes Pfam:PF00026; InterPro: IPR018061 In the MEROPS database peptidases and peptidase homologues are grouped into clans and families. Clans are groups of families for which there is evidence of common ancestry based on a common structural fold: Each clan is identified with two letters, the first representing the catalytic type of the families included in the clan (with the letter 'P' being used for a clan containing families of more than one of the catalytic types serine, threonine and cysteine). Some families cannot yet be assigned to clans, and when a formal assignment is required, such a family is described as belonging to clan A-, C-, M-, N-, S-, T- or U-, according to the catalytic type. Some clans are divided into subclans because there is evidence of a very ancient divergence within the clan, for example MA(E), the gluzincins, and MA(M), the metzincins. Peptidase families are grouped by their catalytic type, the first character representing the catalytic type: A, aspartic; C, cysteine; G, glutamic acid; M, metallo; N, asparagine; S, serine; T, threonine; and U, unknown. The serine, threonine and cysteine peptidases utilise the amino acid as a nucleophile and form an acyl intermediate - these peptidases can also readily act as transferases. In the case of aspartic, glutamic and metallopeptidases, the nucleophile is an activated water molecule. In the case of the asparagine endopeptidases, the nucleophile is asparagine and all are self-processing endopeptidases. In many instances the structural protein fold that characterises the clan or family may have lost its catalytic activity, yet retain its function in protein recognition and binding. Aspartic endopeptidases 3.4.23. from EC of vertebrate, fungal and retroviral origin have been characterised []. More recently, aspartic endopeptidases associated with the processing of bacterial type 4 prepilin [] and archaean preflagellin have been described [, ]. Structurally, aspartic endopeptidases are bilobal enzymes, each lobe contributing a catalytic Asp residue, with an extended active site cleft localised between the two lobes of the molecule. One lobe has probably evolved from the other through a gene duplication event in the distant past. In modern-day enzymes, although the three-dimensional structures are very similar, the amino acid sequences are more divergent, except for the catalytic site motif, which is very conserved. The presence and position of disulphide bridges are other conserved features of aspartic peptidases. All or most aspartate peptidases are endopeptidases. These enzymes have been assigned into clans (proteins which are evolutionary related), and further sub-divided into families, largely on the basis of their tertiary structure. This group of aspartic peptidases belong to the MEROPS peptidase family A2 (retropepsin family, clan AA), subfamily A2A. The family includes the single domain aspartic proteases from retroviruses, retrotransposons, and badnaviruses (plant dsDNA viruses). Retroviral aspartyl protease is synthesised as part of the POL polyprotein that contains; an aspartyl protease, a reverse transcriptase, RNase H and integrase. POL polyprotein undergoes specific enzymatic cleavage to yield the mature proteins.; PDB: 3D3T_B 3SQF_A 1NSO_A 2HB3_A 2HS2_A 2HS1_B 3K4V_A 3GGV_C 1HTG_B 2FDE_A ....
Probab=63.16 E-value=6.7 Score=29.29 Aligned_cols=29 Identities=21% Similarity=0.276 Sum_probs=22.8
Q ss_pred EEEcCeEeEeecCCeeEEEccCccCcccCHHHHHHH
Q 018462 266 ILIENSSTGFCEDGCTAILDSGTSVLAGPTTVVAQI 301 (355)
Q Consensus 266 i~vg~~~~~~~~~~~~aiiDTGt~~i~lP~~~~~~i 301 (355)
+.++++.+ .++||||+....++...+...
T Consensus 10 v~i~g~~i-------~~LlDTGA~vsiI~~~~~~~~ 38 (100)
T PF00077_consen 10 VKINGKKI-------KALLDTGADVSIISEKDWKKL 38 (100)
T ss_dssp EEETTEEE-------EEEEETTBSSEEESSGGSSST
T ss_pred EeECCEEE-------EEEEecCCCcceecccccccc
Confidence 56667654 799999999999998866444
No 50
>COG3577 Predicted aspartyl protease [General function prediction only]
Probab=57.04 E-value=23 Score=30.50 Aligned_cols=40 Identities=10% Similarity=0.207 Sum_probs=30.1
Q ss_pred cceeEEEEeeEEEcCeEeEeecCCeeEEEccCccCcccCHHHHHHHHHHh
Q 018462 256 KGYWQIKVGDILIENSSTGFCEDGCTAILDSGTSVLAGPTTVVAQINHAI 305 (355)
Q Consensus 256 ~~~w~v~~~~i~vg~~~~~~~~~~~~aiiDTGt~~i~lP~~~~~~i~~~i 305 (355)
+++|.++ ..|||+.+ ..++|||.|.+.++++..+.+-=..
T Consensus 103 ~GHF~a~---~~VNGk~v-------~fLVDTGATsVal~~~dA~RlGid~ 142 (215)
T COG3577 103 DGHFEAN---GRVNGKKV-------DFLVDTGATSVALNEEDARRLGIDL 142 (215)
T ss_pred CCcEEEE---EEECCEEE-------EEEEecCcceeecCHHHHHHhCCCc
Confidence 4555554 56888876 5899999999999999887764333
No 51
>PF12384 Peptidase_A2B: Ty3 transposon peptidase; InterPro: IPR024650 In the MEROPS database peptidases and peptidase homologues are grouped into clans and families. Clans are groups of families for which there is evidence of common ancestry based on a common structural fold: Each clan is identified with two letters, the first representing the catalytic type of the families included in the clan (with the letter 'P' being used for a clan containing families of more than one of the catalytic types serine, threonine and cysteine). Some families cannot yet be assigned to clans, and when a formal assignment is required, such a family is described as belonging to clan A-, C-, M-, N-, S-, T- or U-, according to the catalytic type. Some clans are divided into subclans because there is evidence of a very ancient divergence within the clan, for example MA(E), the gluzincins, and MA(M), the metzincins. Peptidase families are grouped by their catalytic type, the first character representing the catalytic type: A, aspartic; C, cysteine; G, glutamic acid; M, metallo; N, asparagine; S, serine; T, threonine; and U, unknown. The serine, threonine and cysteine peptidases utilise the amino acid as a nucleophile and form an acyl intermediate - these peptidases can also readily act as transferases. In the case of aspartic, glutamic and metallopeptidases, the nucleophile is an activated water molecule. In the case of the asparagine endopeptidases, the nucleophile is asparagine and all are self-processing endopeptidases. In many instances the structural protein fold that characterises the clan or family may have lost its catalytic activity, yet retain its function in protein recognition and binding. Ty3 is a gypsy-type, retrovirus-like, element found in the budding yeast. The Ty3 aspartyl protease is required for processing of the viral polyprotein into its mature species [].
Probab=56.58 E-value=16 Score=30.32 Aligned_cols=29 Identities=21% Similarity=0.405 Sum_probs=21.4
Q ss_pred EEEEEEcCCCcEEEEEEeCCCCceeEeCC
Q 018462 81 YGEIGIGSPPQSFSVVFDTGSSNLWVPSS 109 (355)
Q Consensus 81 ~~~i~iGtP~q~~~v~~DTGS~~~wv~~~ 109 (355)
+..+.++.-..+++++|||||..-++...
T Consensus 34 T~~v~l~~~~t~i~vLfDSGSPTSfIr~d 62 (177)
T PF12384_consen 34 TAIVQLNCKGTPIKVLFDSGSPTSFIRSD 62 (177)
T ss_pred EEEEEEeecCcEEEEEEeCCCccceeehh
Confidence 33444555558999999999999888653
No 52
>PF09668 Asp_protease: Aspartyl protease; InterPro: IPR019103 In the MEROPS database peptidases and peptidase homologues are grouped into clans and families. Clans are groups of families for which there is evidence of common ancestry based on a common structural fold: Each clan is identified with two letters, the first representing the catalytic type of the families included in the clan (with the letter 'P' being used for a clan containing families of more than one of the catalytic types serine, threonine and cysteine). Some families cannot yet be assigned to clans, and when a formal assignment is required, such a family is described as belonging to clan A-, C-, M-, N-, S-, T- or U-, according to the catalytic type. Some clans are divided into subclans because there is evidence of a very ancient divergence within the clan, for example MA(E), the gluzincins, and MA(M), the metzincins. Peptidase families are grouped by their catalytic type, the first character representing the catalytic type: A, aspartic; C, cysteine; G, glutamic acid; M, metallo; N, asparagine; S, serine; T, threonine; and U, unknown. The serine, threonine and cysteine peptidases utilise the amino acid as a nucleophile and form an acyl intermediate - these peptidases can also readily act as transferases. In the case of aspartic, glutamic and metallopeptidases, the nucleophile is an activated water molecule. In the case of the asparagine endopeptidases, the nucleophile is asparagine and all are self-processing endopeptidases. In many instances the structural protein fold that characterises the clan or family may have lost its catalytic activity, yet retain its function in protein recognition and binding. Aspartic endopeptidases 3.4.23. from EC of vertebrate, fungal and retroviral origin have been characterised []. More recently, aspartic endopeptidases associated with the processing of bacterial type 4 prepilin [] and archaean preflagellin have been described [, ]. Structurally, aspartic endopeptidases are bilobal enzymes, each lobe contributing a catalytic Asp residue, with an extended active site cleft localised between the two lobes of the molecule. One lobe has probably evolved from the other through a gene duplication event in the distant past. In modern-day enzymes, although the three-dimensional structures are very similar, the amino acid sequences are more divergent, except for the catalytic site motif, which is very conserved. The presence and position of disulphide bridges are other conserved features of aspartic peptidases. All or most aspartate peptidases are endopeptidases. These enzymes have been assigned into clans (proteins which are evolutionary related), and further sub-divided into families, largely on the basis of their tertiary structure. This family of eukaryotic aspartyl proteases have a fold similar to retroviral proteases which implies they function proteolytically during regulated protein turnover []. ; GO: 0004190 aspartic-type endopeptidase activity, 0006508 proteolysis; PDB: 3S8I_A 2I1A_B.
Probab=55.09 E-value=16 Score=28.86 Aligned_cols=29 Identities=14% Similarity=0.189 Sum_probs=23.1
Q ss_pred EEEcCeEeEeecCCeeEEEccCccCcccCHHHHHHH
Q 018462 266 ILIENSSTGFCEDGCTAILDSGTSVLAGPTTVVAQI 301 (355)
Q Consensus 266 i~vg~~~~~~~~~~~~aiiDTGt~~i~lP~~~~~~i 301 (355)
++++|+.+ .|+||||+..+.++.+.++++
T Consensus 29 ~~ing~~v-------kA~VDtGAQ~tims~~~a~r~ 57 (124)
T PF09668_consen 29 CKINGVPV-------KAFVDTGAQSTIMSKSCAERC 57 (124)
T ss_dssp EEETTEEE-------EEEEETT-SS-EEEHHHHHHT
T ss_pred EEECCEEE-------EEEEeCCCCccccCHHHHHHc
Confidence 66788765 699999999999999999884
No 53
>TIGR03698 clan_AA_DTGF clan AA aspartic protease, AF_0612 family. Members of this protein family are clan AA aspartic proteases, related to family TIGR02281. These proteins resemble retropepsins, pepsin-like proteases of retroviruses such as HIV. Members of this family are found in archaea and bacteria.
Probab=53.99 E-value=9.9 Score=29.18 Aligned_cols=22 Identities=27% Similarity=0.486 Sum_probs=19.0
Q ss_pred eeEEEccCccCcc-cCHHHHHHH
Q 018462 280 CTAILDSGTSVLA-GPTTVVAQI 301 (355)
Q Consensus 280 ~~aiiDTGt~~i~-lP~~~~~~i 301 (355)
..+++|||.+... +|.++++.+
T Consensus 17 v~~LVDTGat~~~~l~~~~a~~l 39 (107)
T TIGR03698 17 VRALVDTGFSGFLLVPPDIVNKL 39 (107)
T ss_pred EEEEEECCCCeEEecCHHHHHHc
Confidence 5799999999886 999988875
No 54
>COG5550 Predicted aspartyl protease [Posttranslational modification, protein turnover, chaperones]
Probab=53.92 E-value=8.4 Score=30.27 Aligned_cols=23 Identities=22% Similarity=0.444 Sum_probs=19.8
Q ss_pred EEEccCcc-CcccCHHHHHHHHHH
Q 018462 282 AILDSGTS-VLAGPTTVVAQINHA 304 (355)
Q Consensus 282 aiiDTGt~-~i~lP~~~~~~i~~~ 304 (355)
.+||||.+ ++.+|.++++++..-
T Consensus 29 ~LiDTGFtg~lvlp~~vaek~~~~ 52 (125)
T COG5550 29 ELIDTGFTGYLVLPPQVAEKLGLP 52 (125)
T ss_pred eEEecCCceeEEeCHHHHHhcCCC
Confidence 48999999 999999999887543
No 55
>cd05481 retropepsin_like_LTR_1 Retropepsins_like_LTR; pepsin-like aspartate protease from retrotransposons with long terminal repeats. Retropepsin of retrotransposons with long terminal repeats are pepsin-like aspartate proteases. While fungal and mammalian pepsins are bilobal proteins with structurally related N and C-terminals, retropepsins are half as long as their fungal and mammalian counterparts. The monomers are structurally related to one lobe of the pepsin molecule and retropepsins function as homodimers. The active site aspartate occurs within a motif (Asp-Thr/Ser-Gly), as it does in pepsin. Retroviral aspartyl protease is synthesized as part of the POL polyprotein that contains an aspartyl protease, a reverse transcriptase, RNase H, and an integrase. The POL polyprotein undergoes specific enzymatic cleavage to yield the mature proteins. In aspartate peptidases, Asp residues are ligands of an activated water molecule in all examples where catalytic residues have been identifi
Probab=51.96 E-value=18 Score=26.99 Aligned_cols=23 Identities=17% Similarity=0.232 Sum_probs=20.9
Q ss_pred eeEEEccCccCcccCHHHHHHHH
Q 018462 280 CTAILDSGTSVLAGPTTVVAQIN 302 (355)
Q Consensus 280 ~~aiiDTGt~~i~lP~~~~~~i~ 302 (355)
..+.+|||++...+|...++.+.
T Consensus 11 v~~~vDtGA~vnllp~~~~~~l~ 33 (93)
T cd05481 11 VKFQLDTGATCNVLPLRWLKSLT 33 (93)
T ss_pred EEEEEecCCEEEeccHHHHhhhc
Confidence 46899999999999999998886
No 56
>PF12384 Peptidase_A2B: Ty3 transposon peptidase; InterPro: IPR024650 In the MEROPS database peptidases and peptidase homologues are grouped into clans and families. Clans are groups of families for which there is evidence of common ancestry based on a common structural fold: Each clan is identified with two letters, the first representing the catalytic type of the families included in the clan (with the letter 'P' being used for a clan containing families of more than one of the catalytic types serine, threonine and cysteine). Some families cannot yet be assigned to clans, and when a formal assignment is required, such a family is described as belonging to clan A-, C-, M-, N-, S-, T- or U-, according to the catalytic type. Some clans are divided into subclans because there is evidence of a very ancient divergence within the clan, for example MA(E), the gluzincins, and MA(M), the metzincins. Peptidase families are grouped by their catalytic type, the first character representing the catalytic type: A, aspartic; C, cysteine; G, glutamic acid; M, metallo; N, asparagine; S, serine; T, threonine; and U, unknown. The serine, threonine and cysteine peptidases utilise the amino acid as a nucleophile and form an acyl intermediate - these peptidases can also readily act as transferases. In the case of aspartic, glutamic and metallopeptidases, the nucleophile is an activated water molecule. In the case of the asparagine endopeptidases, the nucleophile is asparagine and all are self-processing endopeptidases. In many instances the structural protein fold that characterises the clan or family may have lost its catalytic activity, yet retain its function in protein recognition and binding. Ty3 is a gypsy-type, retrovirus-like, element found in the budding yeast. The Ty3 aspartyl protease is required for processing of the viral polyprotein into its mature species [].
Probab=51.25 E-value=28 Score=28.93 Aligned_cols=54 Identities=15% Similarity=0.170 Sum_probs=38.3
Q ss_pred CCeeEEEccCccCcccCHHHHHHHHHHhCCC----------ceEEEeCC---ceecccCCEEEEEecC
Q 018462 278 DGCTAILDSGTSVLAGPTTVVAQINHAIGAE----------GIVSMQCK---TVVFEYGNMIWEFLIS 332 (355)
Q Consensus 278 ~~~~aiiDTGt~~i~lP~~~~~~i~~~i~~~----------~~~~v~C~---~i~~~fg~~~~~~~~~ 332 (355)
....+++|||++..++-.++.+.|-=..-.. +.+ .-|+ ++.+...+..+++++-
T Consensus 44 t~i~vLfDSGSPTSfIr~di~~kL~L~~~~app~~fRG~vs~~~-~~tsEAv~ld~~i~n~~i~i~aY 110 (177)
T PF12384_consen 44 TPIKVLFDSGSPTSFIRSDIVEKLELPTHDAPPFRFRGFVSGES-ATTSEAVTLDFYIDNKLIDIAAY 110 (177)
T ss_pred cEEEEEEeCCCccceeehhhHHhhCCccccCCCEEEeeeccCCc-eEEEEeEEEEEEECCeEEEEEEE
Confidence 3467999999999999999988876544222 222 2365 3677778888888753
No 57
>cd05470 pepsin_retropepsin_like Cellular and retroviral pepsin-like aspartate proteases. This family includes both cellular and retroviral pepsin-like aspartate proteases. The cellular pepsin and pepsin-like enzymes are twice as long as their retroviral counterparts. The cellular pepsin-like aspartic proteases are found in mammals, plants, fungi and bacteria. These well known and extensively characterized enzymes include pepsins, chymosin, rennin, cathepsins, and fungal aspartic proteases. Several have long been known to be medically (rennin, cathepsin D and E, pepsin) or commercially (chymosin) important. The eukaryotic pepsin-like proteases contain two domains possessing similar topological features. The N- and C-terminal domains, although structurally related by a 2-fold axis, have only limited sequence homology except in the vicinity of the active site. This suggests that the enzymes evolved by an ancient duplication event. The eukaryotic pepsin-like proteases have two active site
Probab=50.70 E-value=14 Score=27.83 Aligned_cols=21 Identities=29% Similarity=0.382 Sum_probs=17.2
Q ss_pred CCeeEEEccCccCcccCHHHH
Q 018462 278 DGCTAILDSGTSVLAGPTTVV 298 (355)
Q Consensus 278 ~~~~aiiDTGt~~i~lP~~~~ 298 (355)
....++||||++.++++..-.
T Consensus 10 q~~~~~~DTGSs~~Wv~~~~c 30 (109)
T cd05470 10 QTFNVLLDTGSSNLWVPSVDC 30 (109)
T ss_pred ceEEEEEeCCCCCEEEeCCCC
Confidence 446899999999999997643
No 58
>PF05984 Cytomega_UL20A: Cytomegalovirus UL20A protein; InterPro: IPR009245 This family consists of several Cytomegalovirus UL20A proteins. UL20A is thought to be a glycoprotein [].
Probab=49.88 E-value=17 Score=26.18 Aligned_cols=21 Identities=14% Similarity=0.199 Sum_probs=12.9
Q ss_pred CCchhhhHHHHHHHHHHHhhc
Q 018462 1 MGIKFLLAAICMWVCPCILAS 21 (355)
Q Consensus 1 M~~~~~~~~l~~~~~l~~l~~ 21 (355)
|++|..++.++++.+-++|+|
T Consensus 1 MaRRlwiLslLAVtLtVALAA 21 (100)
T PF05984_consen 1 MARRLWILSLLAVTLTVALAA 21 (100)
T ss_pred CchhhHHHHHHHHHHHHHhhc
Confidence 777766666655555555555
No 59
>PRK02710 plastocyanin; Provisional
Probab=41.16 E-value=40 Score=26.30 Aligned_cols=20 Identities=10% Similarity=0.064 Sum_probs=10.3
Q ss_pred CCchhhhHHHHHHHHHHHhh
Q 018462 1 MGIKFLLAAICMWVCPCILA 20 (355)
Q Consensus 1 M~~~~~~~~l~~~~~l~~l~ 20 (355)
|.+++++++..++++++.+.
T Consensus 1 ~~~~~~~~~~~~~~~~~~~~ 20 (119)
T PRK02710 1 MAKRLRSIAAALVAVVSSFG 20 (119)
T ss_pred CchhHHHHHHHHHHHHHHHH
Confidence 66666655555444444333
No 60
>TIGR03475 tap_IncFII_lead RepA leader peptide Tap. This protein is a translated leader peptide that actis in the regulation of the expression of the plasmid replication protein RepA in incF2 group plasmids.
Probab=37.04 E-value=33 Score=18.62 Aligned_cols=21 Identities=24% Similarity=0.471 Sum_probs=15.9
Q ss_pred CCchhhhHHHHHHHHHHHhhc
Q 018462 1 MGIKFLLAAICMWVCPCILAS 21 (355)
Q Consensus 1 M~~~~~~~~l~~~~~l~~l~~ 21 (355)
|-++..-+.+|.|++++.+.|
T Consensus 1 M~rKvQ~~FLc~~LL~cniSA 21 (26)
T TIGR03475 1 MLRKVQYLFLCHLLLPCNISA 21 (26)
T ss_pred CchhHHHHHHHHHHhhhcccc
Confidence 667777788888888876655
No 61
>TIGR03698 clan_AA_DTGF clan AA aspartic protease, AF_0612 family. Members of this protein family are clan AA aspartic proteases, related to family TIGR02281. These proteins resemble retropepsins, pepsin-like proteases of retroviruses such as HIV. Members of this family are found in archaea and bacteria.
Probab=36.76 E-value=46 Score=25.44 Aligned_cols=66 Identities=15% Similarity=0.221 Sum_probs=39.1
Q ss_pred EEEEEcCCC----cEEEEEEeCCCCcee-EeCCCCCCCcccCCCCcccCCCCcceeecCceEEEEeCCcc-EEEeEEEee
Q 018462 82 GEIGIGSPP----QSFSVVFDTGSSNLW-VPSSKCLFSISCYLHSRYRARLSRTYTKIGVPCKIHYGSGQ-ISGFFSQDN 155 (355)
Q Consensus 82 ~~i~iGtP~----q~~~v~~DTGS~~~w-v~~~~C~~~~~C~~~~~y~~~~Sst~~~~~~~~~~~Y~~g~-~~G~~~~D~ 155 (355)
+++.|..|. -++++++|||.+..- ++..--. .-..++.. .....-++|. ..-....++
T Consensus 2 ~~v~~~~p~~~~~~~v~~LVDTGat~~~~l~~~~a~-------~lgl~~~~---------~~~~~tA~G~~~~~~v~~~~ 65 (107)
T TIGR03698 2 LDVELSNPKNPEFMEVRALVDTGFSGFLLVPPDIVN-------KLGLPELD---------QRRVYLADGREVLTDVAKAS 65 (107)
T ss_pred EEEEEeCCCCCCceEEEEEEECCCCeEEecCHHHHH-------HcCCCccc---------CcEEEecCCcEEEEEEEEEE
Confidence 567787773 278899999998764 4432111 00111111 2244556675 455577888
Q ss_pred eeeeeeee
Q 018462 156 VKIGDMII 163 (355)
Q Consensus 156 v~ig~~~~ 163 (355)
+.+++...
T Consensus 66 v~igg~~~ 73 (107)
T TIGR03698 66 IIINGLEI 73 (107)
T ss_pred EEECCEEE
Confidence 99988765
No 62
>PF08194 DIM: DIM protein; InterPro: IPR013172 Drosophila immune-induced molecules (DIMs) are short proteins induced during the immune response of Drosophila []. This entry includes DIMs 1 to 4 and DIM23.
Probab=31.73 E-value=71 Score=19.28 Aligned_cols=8 Identities=25% Similarity=0.135 Sum_probs=3.1
Q ss_pred HHHHHhhc
Q 018462 14 VCPCILAS 21 (355)
Q Consensus 14 ~~l~~l~~ 21 (355)
++++++.+
T Consensus 10 l~lLal~~ 17 (36)
T PF08194_consen 10 LLLLALAA 17 (36)
T ss_pred HHHHHHHh
Confidence 33333444
No 63
>cd06094 RP_Saci_like RP_Saci_like, retropepsin family. Retropepsin on retrotransposons with long terminal repeats (LTR) including Saci-1, -2 and -3 of Schistosoma mansoni. Retropepsins are related to fungal and mammalian pepsins. While fungal and mammalian pepsins are bilobal proteins with structurally related N- and C-termini, retropepsins are half as long as their fungal and mammalian counterparts. The monomers are structurally related to one lobe of the pepsin molecule and retropepsins function as homodimers. The active site aspartate occurs within a motif (Asp-Thr/Ser-Gly), as it does in pepsin. Retroviral aspartyl protease is synthesized as part of the POL polyprotein that contains an aspartyl protease, a reverse transcriptase, RNase H, and an integrase. The POL polyprotein undergoes specific enzymatic cleavage to yield the mature proteins. In aspartate peptidases, Asp residues are ligands of an activated water molecule in all examples where catalytic residues have been identified
Probab=31.07 E-value=2.2e+02 Score=21.09 Aligned_cols=22 Identities=23% Similarity=0.360 Sum_probs=18.1
Q ss_pred cEEEEEEeCCCCceeEeCCCCC
Q 018462 91 QSFSVVFDTGSSNLWVPSSKCL 112 (355)
Q Consensus 91 q~~~v~~DTGS~~~wv~~~~C~ 112 (355)
...+.++|||+..-.+|...|.
T Consensus 8 s~~~fLVDTGA~vSviP~~~~~ 29 (89)
T cd06094 8 SGLRFLVDTGAAVSVLPASSTK 29 (89)
T ss_pred CCcEEEEeCCCceEeecccccc
Confidence 4568999999999999877664
No 64
>PRK14745 RepA leader peptide Tap; Provisional
Probab=28.57 E-value=46 Score=17.98 Aligned_cols=21 Identities=29% Similarity=0.474 Sum_probs=14.7
Q ss_pred CCchhhhHHHHHHHHHHHhhc
Q 018462 1 MGIKFLLAAICMWVCPCILAS 21 (355)
Q Consensus 1 M~~~~~~~~l~~~~~l~~l~~ 21 (355)
|-++....+++.+++.|.+.|
T Consensus 1 mlrk~qylfl~hlllpcnisa 21 (26)
T PRK14745 1 MLRKFQYLFLWHLLLPCIVSA 21 (26)
T ss_pred ChHHHHHHHHHHHHhhccccc
Confidence 566677777788887776554
No 65
>PF15240 Pro-rich: Proline-rich
Probab=28.33 E-value=37 Score=28.63 Aligned_cols=15 Identities=20% Similarity=0.182 Sum_probs=8.7
Q ss_pred hHHHHHHHHHHHhhc
Q 018462 7 LAAICMWVCPCILAS 21 (355)
Q Consensus 7 ~~~l~~~~~l~~l~~ 21 (355)
|++++|.++||||.+
T Consensus 1 MLlVLLSvALLALSS 15 (179)
T PF15240_consen 1 MLLVLLSVALLALSS 15 (179)
T ss_pred ChhHHHHHHHHHhhh
Confidence 345555566666666
No 66
>PF08048 RepA1_leader: Tap RepA1 leader peptide; InterPro: IPR012605 This entry represents of the RepA1 leader peptide known as Tap found in IncFII plasmids. The frequency of replication of IncFII plasmid NR1 during the cell division cycle is regulated by the control of the synthesis of the plasmid-specific replication initiation protein (RepA1). When RepA1 is synthesised, it binds to the plasmid replication origin (ori) and effects the assembly of a replication complex composed of host proteins that mediate the replication of the plasmid [, ]. The tap gene encodes a 24-amino acid peptide whose translation is required for the translation of repA.
Probab=28.25 E-value=65 Score=17.35 Aligned_cols=21 Identities=24% Similarity=0.471 Sum_probs=15.0
Q ss_pred CCchhhhHHHHHHHHHHHhhc
Q 018462 1 MGIKFLLAAICMWVCPCILAS 21 (355)
Q Consensus 1 M~~~~~~~~l~~~~~l~~l~~ 21 (355)
|-++.....+|-+++.+.+.|
T Consensus 1 MlrK~Q~~FLc~lLL~CniSA 21 (25)
T PF08048_consen 1 MLRKVQYLFLCHLLLPCNISA 21 (25)
T ss_pred CchhHHHHHHHHHHhhhhccc
Confidence 666777777888887776554
No 67
>cd06097 Aspergillopepsin_like Aspergillopepsin_like, aspartic proteases of fungal origin. The members of this family are aspartic proteases of fungal origin, including aspergillopepsin, rhizopuspepsin, endothiapepsin, and rodosporapepsin. The various fungal species in this family may be the most economically important genus of fungi. They may serve as virulence factors or as industrial aids. For example, Aspergillopepsin from A. fumigatus is involved in invasive aspergillosis owing to its elastolytic activity and Aspergillopepsins from the mold A. saitoi are used in fermentation industry. Aspartic proteinases are a group of proteolytic enzymes in which the scissile peptide bond is attacked by a nucleophilic water molecule activated by two aspartic residues in a DT(S)G motif at the active site. They have a similar fold composed of two beta-barrel domains. Between the N-terminal and C-terminal domains, each of which contributes one catalytic aspartic residue, there is an extended active-
Probab=27.70 E-value=51 Score=29.72 Aligned_cols=28 Identities=21% Similarity=0.118 Sum_probs=20.7
Q ss_pred eEEEcCeEeEeecCCeeEEEccCccCcccCHHH
Q 018462 265 DILIENSSTGFCEDGCTAILDSGTSVLAGPTTV 297 (355)
Q Consensus 265 ~i~vg~~~~~~~~~~~~aiiDTGt~~i~lP~~~ 297 (355)
.|.||.. .....+++|||++.+++|..-
T Consensus 4 ~i~vGtP-----~Q~~~v~~DTGS~~~wv~~~~ 31 (278)
T cd06097 4 PVKIGTP-----PQTLNLDLDTGSSDLWVFSSE 31 (278)
T ss_pred eEEECCC-----CcEEEEEEeCCCCceeEeeCC
Confidence 3667652 234579999999999999653
No 68
>PF08284 RVP_2: Retroviral aspartyl protease; InterPro: IPR013242 This region defines single domain aspartyl proteases from retroviruses, retrotransposons, and badnaviruses (plant dsDNA viruses). These proteases are generally part of a larger polyprotein; usually pol, more rarely gag. Retroviral proteases appear to be homologous to a single domain of the two-domain eukaryotic aspartyl proteases.
Probab=27.26 E-value=65 Score=25.78 Aligned_cols=23 Identities=13% Similarity=0.296 Sum_probs=19.3
Q ss_pred eeEEEccCccCcccCHHHHHHHH
Q 018462 280 CTAILDSGTSVLAGPTTVVAQIN 302 (355)
Q Consensus 280 ~~aiiDTGt~~i~lP~~~~~~i~ 302 (355)
..++||||++..++..+.+..+.
T Consensus 33 ~~vLiDSGAThsFIs~~~a~~~~ 55 (135)
T PF08284_consen 33 ASVLIDSGATHSFISSSFAKKLG 55 (135)
T ss_pred EEEEEecCCCcEEccHHHHHhcC
Confidence 46999999999999988877544
No 69
>PRK14758 hypothetical protein; Provisional
Probab=25.77 E-value=83 Score=17.39 Aligned_cols=21 Identities=19% Similarity=0.293 Sum_probs=14.6
Q ss_pred CCchhhhHHHHHHHHHHHhhc
Q 018462 1 MGIKFLLAAICMWVCPCILAS 21 (355)
Q Consensus 1 M~~~~~~~~l~~~~~l~~l~~ 21 (355)
|-.|-+.=++++++.+|++.+
T Consensus 1 Mv~RYrFEliLivlIlCalia 21 (27)
T PRK14758 1 MVGRYRFEFILIILILCALIA 21 (27)
T ss_pred CchHHHHHHHHHHHHHHHHHH
Confidence 556666667777777777766
No 70
>cd05474 SAP_like SAPs, pepsin-like proteinases secreted from pathogens to degrade host proteins. SAPs (Secreted aspartic proteinases) are secreted from a group of pathogenic fungi, predominantly Candida species. They are secreted from the pathogen to degrade host proteins. SAP is one of the most significant extracellular hydrolytic enzymes produced by C. albicans. SAP proteins, encoded by a family of 10 SAP genes. All 10 SAP genes of C. albicans encode preproenzymes, approximately 60 amino acid longer than the mature enzyme, which are processed when transported via the secretory pathway. The mature enzymes contain sequence motifs typical for all aspartyl proteinases, including the two conserved aspartate residues other active site and conserved cysteine residues implicated in the maintenance of the three-dimensional structure. Most Sap proteins contain putative N-glycosylation sites, but it remains to be determined which Sap proteins are glycosylated. This family of aspartate proteases
Probab=24.03 E-value=69 Score=28.94 Aligned_cols=25 Identities=28% Similarity=0.449 Sum_probs=19.3
Q ss_pred eEEEcCeEeEeecCCeeEEEccCccCcccC
Q 018462 265 DILIENSSTGFCEDGCTAILDSGTSVLAGP 294 (355)
Q Consensus 265 ~i~vg~~~~~~~~~~~~aiiDTGt~~i~lP 294 (355)
.+.||.. .....+++|||++.+++|
T Consensus 6 ~i~iGtp-----~q~~~v~~DTgS~~~wv~ 30 (295)
T cd05474 6 ELSVGTP-----PQKVTVLLDTGSSDLWVP 30 (295)
T ss_pred EEEECCC-----CcEEEEEEeCCCCcceee
Confidence 3667763 334679999999999999
No 71
>cd05490 Cathepsin_D2 Cathepsin_D2, pepsin family of proteinases. Cathepsin D is the major aspartic proteinase of the lysosomal compartment where it functions in protein catabolism. It is a member of the pepsin family of proteinases. This enzyme is distinguished from other members of the pepsin family by two features that are characteristic of lysosomal hydrolases. First, mature Cathepsin D is found predominantly in a two-chain form due to a posttranslational cleavage event. Second, it contains phosphorylated, N-linked oligosaccharides that target the enzyme to lysosomes via mannose-6-phosphate receptors. Cathepsin D preferentially attacks peptide bonds flanked by bulky hydrophobic amino acids and its pH optimum is between pH 2.8 and 4.0. Two active site aspartic acid residues are essential for the catalytic activity of aspartic proteinases. Like other aspartic proteinases, Cathepsin D is a bilobed molecule; the two evolutionary related lobes are mostly made up of beta-sheets and flank
Probab=23.53 E-value=68 Score=29.66 Aligned_cols=27 Identities=30% Similarity=0.352 Sum_probs=20.2
Q ss_pred EEEcCeEeEeecCCeeEEEccCccCcccCHHH
Q 018462 266 ILIENSSTGFCEDGCTAILDSGTSVLAGPTTV 297 (355)
Q Consensus 266 i~vg~~~~~~~~~~~~aiiDTGt~~i~lP~~~ 297 (355)
|.||.. .....++||||++.+++|...
T Consensus 11 i~iGtP-----~q~~~v~~DTGSs~~Wv~~~~ 37 (325)
T cd05490 11 IGIGTP-----PQTFTVVFDTGSSNLWVPSVH 37 (325)
T ss_pred EEECCC-----CcEEEEEEeCCCccEEEEcCC
Confidence 567652 344689999999999998643
No 72
>cd05471 pepsin_like Pepsin-like aspartic proteases, bilobal enzymes that cleave bonds in peptides at acidic pH. Pepsin-like aspartic proteases are found in mammals, plants, fungi and bacteria. These well known and extensively characterized enzymes include pepsins, chymosin, renin, cathepsins, and fungal aspartic proteases. Several have long been known to be medically (renin, cathepsin D and E, pepsin) or commercially (chymosin) important. Structurally, aspartic proteases are bilobal enzymes, each lobe contributing a catalytic Aspartate residue, with an extended active site cleft localized between the two lobes of the molecule. The N- and C-terminal domains, although structurally related by a 2-fold axis, have only limited sequence homology except the vicinity of the active site. This suggests that the enzymes evolved by an ancient duplication event. Most members of the pepsin family specifically cleave bonds in peptides that are at least six residues in length, with hydrophobic residu
Probab=23.36 E-value=1.1e+02 Score=27.17 Aligned_cols=44 Identities=18% Similarity=0.245 Sum_probs=29.8
Q ss_pred eeEeceecCCceEEE---EEEEcC-----CCcEEEEEEeCCCCceeEeCCCC
Q 018462 68 DVVYLNNYLDAQYYG---EIGIGS-----PPQSFSVVFDTGSSNLWVPSSKC 111 (355)
Q Consensus 68 ~~~~l~~~~~~~y~~---~i~iGt-----P~q~~~v~~DTGS~~~wv~~~~C 111 (355)
...|+.......|.+ .|.||. ......+++|||++.+++|..-+
T Consensus 170 ~~~p~~~~~~~~~~v~l~~i~v~~~~~~~~~~~~~~iiDsGt~~~~lp~~~~ 221 (283)
T cd05471 170 TYTPVVSNGPGYWQVPLDGISVGGKSVISSSGGGGAIVDSGTSLIYLPSSVY 221 (283)
T ss_pred EEEecCCCCCCEEEEEeCeEEECCceeeecCCCcEEEEecCCCCEeCCHHHH
Confidence 345555433456665 457775 23577899999999999986543
No 73
>cd05476 pepsin_A_like_plant Chroloplast Nucleoids DNA-binding Protease and Nucellin, pepsin-like aspartic proteases from plants. This family contains pepsin like aspartic proteases from plants including Chloroplast Nucleoids DNA-binding Protease and Nucellin. Chloroplast Nucleoids DNA-binding Protease catalyzes the degradation of ribulose-1,5-bisphosphate carboxylase/oxygenase (Rubisco) in senescent leaves of tobacco and Nucellins are important regulators of nucellar cell's progressive degradation after ovule fertilization. Structurally, aspartic proteases are bilobal enzymes, each lobe contributing a catalytic Asp residue, with an extended active site cleft localized between the two lobes of the molecule. The N- and C-terminal domains, although structurally related by a 2-fold axis, have only limited sequence homology except the vicinity of the active site. This suggests that the enzymes evolved by an ancient duplication event. The enzymes specifically cleave bonds in peptides which
Probab=22.93 E-value=74 Score=28.43 Aligned_cols=18 Identities=17% Similarity=0.270 Sum_probs=15.6
Q ss_pred CCeeEEEccCccCcccCH
Q 018462 278 DGCTAILDSGTSVLAGPT 295 (355)
Q Consensus 278 ~~~~aiiDTGt~~i~lP~ 295 (355)
....++||||++.+++|.
T Consensus 13 q~~~v~~DTGSs~~wv~~ 30 (265)
T cd05476 13 QPFSLIVDTGSDLTWTQC 30 (265)
T ss_pred cceEEEecCCCCCEEEcC
Confidence 456899999999999985
No 74
>cd00303 retropepsin_like Retropepsins; pepsin-like aspartate proteases. The family includes pepsin-like aspartate proteases from retroviruses, retrotransposons and retroelements, as well as eukaryotic dna-damage-inducible proteins (DDIs), and bacterial aspartate peptidases. While fungal and mammalian pepsins are bilobal proteins with structurally related N and C-terminals, retropepsins are half as long as their fungal and mammalian counterparts. The monomers are structurally related to one lobe of the pepsin molecule and retropepsins function as homodimers. The active site aspartate occurs within a motif (Asp-Thr/Ser-Gly), as it does in pepsin. Retroviral aspartyl protease is synthesized as part of the POL polyprotein that contains an aspartyl protease, a reverse transcriptase, RNase H, and an integrase. The POL polyprotein undergoes specific enzymatic cleavage to yield the mature proteins. In aspartate peptidases, Asp residues are ligands of an activated water molecule in all examples
Probab=22.36 E-value=1.7e+02 Score=19.50 Aligned_cols=22 Identities=27% Similarity=0.369 Sum_probs=19.0
Q ss_pred eeEEEccCccCcccCHHHHHHH
Q 018462 280 CTAILDSGTSVLAGPTTVVAQI 301 (355)
Q Consensus 280 ~~aiiDTGt~~i~lP~~~~~~i 301 (355)
..+++|||++...+..+.++..
T Consensus 10 ~~~liDtgs~~~~~~~~~~~~~ 31 (92)
T cd00303 10 VRALVDSGASVNFISESLAKKL 31 (92)
T ss_pred EEEEEcCCCcccccCHHHHHHc
Confidence 4799999999999999888765
No 75
>cd06096 Plasmepsin_5 Plasmepsins are a class of aspartic proteinases produced by the plasmodium parasite. The family contains a group of aspartic proteinases homologous to plasmepsin 5. Plasmepsins are a class of at least 10 enzymes produced by the plasmodium parasite. Through their haemoglobin-degrading activity, they are an important cause of symptoms in malaria sufferers. This family of enzymes is a potential target for anti-malarial drugs. Plasmepsins are aspartic acid proteases, which means their active site contains two aspartic acid residues. These two aspartic acid residue act respectively as proton donor and proton acceptor, catalyzing the hydrolysis of peptide bond in proteins. Aspartic proteinases are composed of two structurally similar beta barrel lobes, each lobe contributing an aspartic acid residue to form a catalytic dyad that acts to cleave the substrate peptide bond. The catalytic Asp residues are contained in an Asp-Thr-Gly-Ser/thr motif in both N- and C-terminal l
Probab=22.05 E-value=83 Score=29.16 Aligned_cols=28 Identities=39% Similarity=0.546 Sum_probs=20.6
Q ss_pred eEEEcCeEeEeecCCeeEEEccCccCcccCHHH
Q 018462 265 DILIENSSTGFCEDGCTAILDSGTSVLAGPTTV 297 (355)
Q Consensus 265 ~i~vg~~~~~~~~~~~~aiiDTGt~~i~lP~~~ 297 (355)
.|.||.- .....++||||++.+++|...
T Consensus 7 ~i~vGtP-----~Q~~~v~~DTGS~~~wv~~~~ 34 (326)
T cd06096 7 DIFIGNP-----PQKQSLILDTGSSSLSFPCSQ 34 (326)
T ss_pred EEEecCC-----CeEEEEEEeCCCCceEEecCC
Confidence 3667752 234679999999999998653
No 76
>cd05477 gastricsin Gastricsins, asparate proteases produced in gastric mucosa. Gastricsin is also called pepsinogen C. Gastricsins are produced in gastric mucosa of mammals. It is synthesized by the chief cells in the stomach as an inactive zymogen. It is self-converted to a mature enzyme under acidic conditions. Human gastricsin is distributed throughout all parts of the stomach. Gastricsin is synthesized as an inactive progastricsin that has an approximately 40 residue prosequence. It is self-converting to a mature enzyme being triggered by a drop in pH from neutrality to acidic conditions. Like other aspartic proteases, gastricsin are characterized by two catalytic aspartic residues at the active site, and display optimal activity at acidic pH. Mature enzyme has a pseudo-2-fold symmetry that passes through the active site between the catalytic aspartate residues. Structurally, aspartic proteases are bilobal enzymes, each lobe contributing a catalytic aspartate residue, with an exten
Probab=21.94 E-value=80 Score=29.05 Aligned_cols=27 Identities=26% Similarity=0.406 Sum_probs=20.2
Q ss_pred eEEEcCeEeEeecCCeeEEEccCccCcccCHH
Q 018462 265 DILIENSSTGFCEDGCTAILDSGTSVLAGPTT 296 (355)
Q Consensus 265 ~i~vg~~~~~~~~~~~~aiiDTGt~~i~lP~~ 296 (355)
.|.||.. .....++||||++.+++|..
T Consensus 7 ~i~iGtP-----~q~~~v~~DTGS~~~wv~~~ 33 (318)
T cd05477 7 EISIGTP-----PQNFLVLFDTGSSNLWVPSV 33 (318)
T ss_pred EEEECCC-----CcEEEEEEeCCCccEEEccC
Confidence 3667752 23467999999999999964
No 77
>cd06098 phytepsin Phytepsin, a plant homolog of mammalian lysosomal pepsins. Phytepsin, a plant homolog of mammalian lysosomal pepsins, resides in grains, roots, stems, leaves and flowers. Phytepsin may participate in metabolic turnover and in protein processing events. In addition, it highly expressed in several plant tissues undergoing apoptosis. Phytepsin contains an internal region consisting of about 100 residues not present in animal or microbial pepsins. This region is thus called a plant specific insert. The insert is highly similar to saponins, which are lysosomal sphingolipid-activating proteins in mammalian cells. The saponin-like domain may have a role in the vacuolar targeting of phytepsin. Phytepsin, as its animal counterparts, possesses a topology typical of all aspartic proteases. They are bilobal enzymes, each lobe contributing a catalytic Asp residue, with an extended active site cleft localized between the two lobes of the molecule. One lobe has probably evolved fro
Probab=21.64 E-value=77 Score=29.25 Aligned_cols=32 Identities=28% Similarity=0.289 Sum_probs=22.7
Q ss_pred eeEEEEeeEEEcCeEeEeecCCeeEEEccCccCcccCHHH
Q 018462 258 YWQIKVGDILIENSSTGFCEDGCTAILDSGTSVLAGPTTV 297 (355)
Q Consensus 258 ~w~v~~~~i~vg~~~~~~~~~~~~aiiDTGt~~i~lP~~~ 297 (355)
.|.++ |.||.. .....++||||++.+++|...
T Consensus 10 ~Y~~~---i~iGtP-----~Q~~~v~~DTGSs~lWv~~~~ 41 (317)
T cd06098 10 QYFGE---IGIGTP-----PQKFTVIFDTGSSNLWVPSSK 41 (317)
T ss_pred EEEEE---EEECCC-----CeEEEEEECCCccceEEecCC
Confidence 45443 667742 234689999999999999753
No 78
>cd05486 Cathespin_E Cathepsin E, non-lysosomal aspartic protease. Cathepsin E is an intracellular, non-lysosomal aspartic protease expressed in a variety of cells and tissues. The protease has proposed physiological roles in antigen presentation by the MHC class II system, in the biogenesis of the vasoconstrictor peptide endothelin, and in neurodegeneration associated with brain ischemia and aging. Cathepsin E is the only A1 aspartic protease that exists as a homodimer with a disulfide bridge linking the two monomers. Like many other aspartic proteases, it is synthesized as a zymogen which is catalytically inactive towards its natural substrates at neutral pH and which auto-activates in an acidic environment. The overall structure follows the general fold of aspartic proteases of the A1 family, it is composed of two structurally similar beta barrel lobes, each lobe contributing an aspartic acid residue to form a catalytic dyad that acts to cleave the substrate peptide bond. The catalyt
Probab=21.42 E-value=79 Score=29.10 Aligned_cols=19 Identities=37% Similarity=0.510 Sum_probs=16.1
Q ss_pred CCeeEEEccCccCcccCHH
Q 018462 278 DGCTAILDSGTSVLAGPTT 296 (355)
Q Consensus 278 ~~~~aiiDTGt~~i~lP~~ 296 (355)
....++||||++.+++|..
T Consensus 12 Q~~~v~~DTGSs~~Wv~s~ 30 (316)
T cd05486 12 QNFTVIFDTGSSNLWVPSI 30 (316)
T ss_pred cEEEEEEcCCCccEEEecC
Confidence 4468999999999999864
No 79
>cd05472 cnd41_like Chloroplast Nucleoids DNA-binding Protease, catalyzes the degradation of ribulose-1,5-bisphosphate carboxylase/oxygenase. Chloroplast Nucleoids DNA-binding Protease catalyzes the degradation of ribulose-1,5-bisphosphate carboxylase/oxygenase (Rubisco) in senescent leaves of tobacco. Antisense tobacco with reduced amount of CND41 maintained green leaves and constant protein levels, especially Rubisco. CND41 has DNA-binding as well as aspartic protease activities. The pepsin-like aspartic protease domain is located at the C-terminus of the protein. The enzyme is characterized by having two aspartic protease catalytic site motifs, the Asp-Thr-Gly-Ser in the N-terminal and Asp-Ser-Gly-Ser in the C-terminal region. Aspartic proteases are bilobal enzymes, each lobe contributing a catalytic Asp residue, with an extended active site cleft localized between the two lobes of the molecule. One lobe may be evolved from the other through ancient gene-duplication event. This fami
Probab=21.25 E-value=87 Score=28.51 Aligned_cols=25 Identities=16% Similarity=0.203 Sum_probs=18.8
Q ss_pred EEEcCeEeEeecCCeeEEEccCccCcccCH
Q 018462 266 ILIENSSTGFCEDGCTAILDSGTSVLAGPT 295 (355)
Q Consensus 266 i~vg~~~~~~~~~~~~aiiDTGt~~i~lP~ 295 (355)
|.||.- .....+++|||++.++++-
T Consensus 6 i~iGtP-----~q~~~v~~DTGSs~~Wv~c 30 (299)
T cd05472 6 VGLGTP-----ARDQTVIVDTGSDLTWVQC 30 (299)
T ss_pred EecCCC-----CcceEEEecCCCCcccccC
Confidence 556642 3456899999999999974
No 80
>cd05480 NRIP_C NRIP_C; putative nuclear receptor interacting protein. Proteins in this family have been described as probable nuclear receptor interacting proteins. The C-terminal domain of this family is homologous to the retroviral aspartyl protease domain. The domain is structurally related to one lobe of the pepsin molecule. The conserved active site aspartate occurs within a motif (Asp-Thr/Ser-Gly), as it does in pepsin. Asp residues are ligands of an activated water molecule in all examples where catalytic residues have been identified. This group of aspartate peptidases is classified by MEROPS as the peptidase family A2 (retropepsin family, clan AA), subfamily A2A.
Probab=21.24 E-value=1.4e+02 Score=22.67 Aligned_cols=20 Identities=15% Similarity=0.237 Sum_probs=17.6
Q ss_pred eEEEccCccCcccCHHHHHH
Q 018462 281 TAILDSGTSVLAGPTTVVAQ 300 (355)
Q Consensus 281 ~aiiDTGt~~i~lP~~~~~~ 300 (355)
.|.+|||+..+.+...-.+.
T Consensus 11 kAfVDsGaQ~timS~~caer 30 (103)
T cd05480 11 RALVDTGCQYNLISAACLDR 30 (103)
T ss_pred EEEEecCCchhhcCHHHHHH
Confidence 69999999999999887765
Done!