BLASTP 2.2.26 [Sep-21-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.


Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 018463
         (355 letters)

Database: pdbaa 
           62,578 sequences; 14,973,337 total letters

Searching..................................................done



>pdb|1UHR|A Chain A, Solution Structure Of The Swib Domain Of Mouse Brg1-
           Associated Factor 60a
          Length = 93

 Score = 51.6 bits (122), Expect = 6e-07,   Method: Compositional matrix adjust.
 Identities = 26/89 (29%), Positives = 45/89 (50%)

Query: 169 GPGGLNKVCGVSPELQAVVGQPAMPRTEIVKQLWAYIRKNNLQDPSNKRKIICDDALRVV 228
           G  G      + P L  ++G     R  I++ LW YI+ + LQDP  +  ++CD  L+ +
Sbjct: 4   GSSGQPPQFKLDPRLARLLGIHTQTRPVIIQALWQYIKTHKLQDPHEREFVLCDKYLQQI 63

Query: 229 FETDCTDMFKMNKLLAKHIIPLEPTKESS 257
           FE+      ++ + L   ++P EP+  SS
Sbjct: 64  FESQRMKFSEIPQRLHALLMPPEPSGPSS 92



 Score = 36.6 bits (83), Expect = 0.023,   Method: Compositional matrix adjust.
 Identities = 19/67 (28%), Positives = 33/67 (49%), Gaps = 6/67 (8%)

Query: 268 TEGMESGPSSVIISEALAKFLG--TGGREMLQAEATKRVWEYIKVNHLEDPLNSMVILCD 325
           + G    P    +   LA+ LG  T  R ++     + +W+YIK + L+DP     +LCD
Sbjct: 2   SSGSSGQPPQFKLDPRLARLLGIHTQTRPVI----IQALWQYIKTHKLQDPHEREFVLCD 57

Query: 326 AKLRELL 332
             L+++ 
Sbjct: 58  KYLQQIF 64


>pdb|1V32|A Chain A, Solution Structure Of The SwibMDM2 DOMAIN OF THE
           Hypothetical Protein At5g08430 From Arabidopsis Thaliana
          Length = 101

 Score = 43.5 bits (101), Expect = 2e-04,   Method: Composition-based stats.
 Identities = 21/55 (38%), Positives = 31/55 (56%)

Query: 192 MPRTEIVKQLWAYIRKNNLQDPSNKRKIICDDALRVVFETDCTDMFKMNKLLAKH 246
           + R ++   +  YI K  L DPSNK+K++CD  L ++F T      K+  LL KH
Sbjct: 35  ISRYDVSDTIAKYISKEGLLDPSNKKKVVCDKRLVLLFGTRTIFRMKVYDLLEKH 89



 Score = 32.3 bits (72), Expect = 0.40,   Method: Composition-based stats.
 Identities = 20/74 (27%), Positives = 40/74 (54%), Gaps = 4/74 (5%)

Query: 281 SEALAKFLGTGGR---EML-QAEATKRVWEYIKVNHLEDPLNSMVILCDAKLRELLGCES 336
           S  L +FL + G+   EM+ + + +  + +YI    L DP N   ++CD +L  L G  +
Sbjct: 17  SRQLIEFLHSLGKDTSEMISRYDVSDTIAKYISKEGLLDPSNKKKVVCDKRLVLLFGTRT 76

Query: 337 ISALGIQEMLARNH 350
           I  + + ++L +++
Sbjct: 77  IFRMKVYDLLEKHY 90


>pdb|1V31|A Chain A, Solution Structure Of The SwibMDM2 DOMAIN OF THE
           Hypothetical Protein At5g14170 From Arabidopsis Thaliana
          Length = 93

 Score = 39.3 bits (90), Expect = 0.003,   Method: Compositional matrix adjust.
 Identities = 20/79 (25%), Positives = 39/79 (49%)

Query: 169 GPGGLNKVCGVSPELQAVVGQPAMPRTEIVKQLWAYIRKNNLQDPSNKRKIICDDALRVV 228
           G  G+ +   +S  L  V+G     R  I+  +W Y++   LQ+P++     CD AL+ V
Sbjct: 4   GSSGVPEKFKLSTALMDVLGIEVETRPRIIAAIWHYVKARKLQNPNDPSFFNCDAALQKV 63

Query: 229 FETDCTDMFKMNKLLAKHI 247
           F  +      +++ ++ H+
Sbjct: 64  FGEEKLKFTMVSQKISHHL 82



 Score = 33.5 bits (75), Expect = 0.20,   Method: Compositional matrix adjust.
 Identities = 20/86 (23%), Positives = 38/86 (44%), Gaps = 10/86 (11%)

Query: 268 TEGMESGPSSVIISEALAKFLGTGGREMLQAEATKRV----WEYIKVNHLEDPLNSMVIL 323
           + G    P    +S AL   LG      ++ E   R+    W Y+K   L++P +     
Sbjct: 2   SSGSSGVPEKFKLSTALMDVLG------IEVETRPRIIAAIWHYVKARKLQNPNDPSFFN 55

Query: 324 CDAKLRELLGCESISALGIQEMLARN 349
           CDA L+++ G E +    + + ++ +
Sbjct: 56  CDAALQKVFGEEKLKFTMVSQKISHH 81


  Database: pdbaa
    Posted date:  Mar 3, 2013 10:34 PM
  Number of letters in database: 14,973,337
  Number of sequences in database:  62,578
  
Lambda     K      H
   0.316    0.132    0.375 

Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 7,673,704
Number of Sequences: 62578
Number of extensions: 267851
Number of successful extensions: 677
Number of sequences better than 100.0: 10
Number of HSP's better than 100.0 without gapping: 3
Number of HSP's successfully gapped in prelim test: 7
Number of HSP's that attempted gapping in prelim test: 671
Number of HSP's gapped (non-prelim): 13
length of query: 355
length of database: 14,973,337
effective HSP length: 100
effective length of query: 255
effective length of database: 8,715,537
effective search space: 2222461935
effective search space used: 2222461935
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.6 bits)
S2: 52 (24.6 bits)