Query 018463
Match_columns 355
No_of_seqs 296 out of 943
Neff 5.4
Searched_HMMs 29240
Date Mon Mar 25 15:40:13 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/018463.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/018463hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 1v31_A Hypothetical protein RA 100.0 2.8E-29 9.6E-34 204.3 6.5 89 168-256 3-91 (93)
2 1uhr_A SWI/SNF related, matrix 99.9 3.2E-28 1.1E-32 198.1 4.6 83 174-256 9-91 (93)
3 1v31_A Hypothetical protein RA 99.9 9.5E-27 3.3E-31 189.4 7.3 80 272-353 6-85 (93)
4 1v32_A AT5G08430, hypothetical 99.9 3.5E-26 1.2E-30 188.7 7.8 78 277-354 13-94 (101)
5 1uhr_A SWI/SNF related, matrix 99.9 1.7E-26 5.7E-31 188.0 5.4 78 274-353 8-85 (93)
6 1v32_A AT5G08430, hypothetical 99.9 2.2E-25 7.4E-30 183.9 7.9 76 177-252 14-95 (101)
7 1q1v_A DEK protein; winged-hel 99.6 1.5E-16 5.2E-21 123.0 6.6 57 1-58 11-68 (70)
8 3dac_M MDM4 protein; MDMX, MDM 97.5 0.00017 5.8E-09 61.1 6.3 76 277-352 24-106 (130)
9 3fea_A MDM4 protein; HDMX, HDM 97.2 0.00044 1.5E-08 56.3 5.3 77 277-353 15-98 (100)
10 2z5s_M MDM4 protein, zebrafish 97.1 0.00081 2.8E-08 57.3 6.1 75 277-351 23-104 (140)
11 1ycq_A MDM2, MDM2; anti-oncoge 97.0 0.0015 5.1E-08 53.7 6.7 71 277-347 11-85 (107)
12 3dac_M MDM4 protein; MDMX, MDM 96.9 0.00091 3.1E-08 56.7 4.8 76 177-252 25-109 (130)
13 2axi_A Ubiquitin-protein ligas 96.7 0.0014 4.7E-08 54.5 4.2 71 277-347 11-85 (115)
14 3fea_A MDM4 protein; HDMX, HDM 96.6 0.0017 5.9E-08 52.8 4.5 74 178-251 17-99 (100)
15 1z1m_A Ubiquitin-protein ligas 96.5 0.0047 1.6E-07 51.6 6.4 72 278-349 28-103 (119)
16 2z5s_M MDM4 protein, zebrafish 96.5 0.0032 1.1E-07 53.7 5.2 76 176-251 23-107 (140)
17 1z1m_A Ubiquitin-protein ligas 96.3 0.0057 2E-07 51.1 5.7 64 190-253 46-110 (119)
18 1ycq_A MDM2, MDM2; anti-oncoge 96.3 0.006 2.1E-07 50.2 5.6 75 177-251 12-95 (107)
19 2axi_A Ubiquitin-protein ligas 95.8 0.0052 1.8E-07 51.1 3.0 71 177-247 12-88 (115)
20 2kwl_A ACP, acyl carrier prote 72.1 4.3 0.00015 30.2 4.2 57 188-247 1-57 (84)
21 2kwl_A ACP, acyl carrier prote 65.1 6.9 0.00024 29.0 4.1 54 294-350 4-57 (84)
22 1f80_D Acyl carrier protein; t 59.3 7.1 0.00024 28.5 3.2 54 294-350 2-55 (81)
23 2lol_A ACP, acyl carrier prote 55.3 16 0.00054 26.6 4.6 53 295-350 2-54 (81)
24 2cnr_A FAS, ACP, acyl carrier 54.2 15 0.00052 26.6 4.3 54 294-350 2-55 (82)
25 1x3o_A Acyl carrier protein; s 46.3 13 0.00045 26.8 2.8 53 295-350 1-53 (80)
26 1f80_D Acyl carrier protein; t 45.1 17 0.00058 26.4 3.2 54 191-247 2-55 (81)
27 2lol_A ACP, acyl carrier prote 42.4 36 0.0012 24.6 4.7 53 192-247 2-54 (81)
28 2dnw_A Acyl carrier protein; A 41.5 29 0.00098 26.7 4.2 58 187-247 6-63 (99)
29 2cnr_A FAS, ACP, acyl carrier 40.8 41 0.0014 24.2 4.8 54 191-247 2-55 (82)
30 1dv5_A APO-DCP, APO-D-alanyl c 39.4 16 0.00055 27.0 2.3 52 296-350 1-52 (80)
31 1x3o_A Acyl carrier protein; s 37.5 25 0.00085 25.2 3.1 53 192-247 1-53 (80)
32 2ahq_A Sigma-54, RNA polymeras 37.4 38 0.0013 25.8 4.2 42 2-44 16-57 (76)
33 2dnw_A Acyl carrier protein; A 36.5 27 0.00092 26.8 3.3 55 293-350 9-63 (99)
34 1klp_A ACP, ACPM, meromycolate 35.6 28 0.00096 27.6 3.4 54 294-350 2-55 (115)
35 2l4b_A Acyl carrier protein; i 33.2 7 0.00024 29.3 -0.6 56 294-350 3-59 (88)
36 2jq4_A AGR_C_4658P, hypothetic 31.2 29 0.001 27.3 2.8 56 293-350 16-71 (105)
37 1vku_A Acyl carrier protein; T 30.8 41 0.0014 26.3 3.5 54 293-350 11-64 (100)
38 2ava_A ACP I, acyl carrier pro 29.0 49 0.0017 24.0 3.5 52 296-350 1-52 (82)
39 2ava_A ACP I, acyl carrier pro 28.9 75 0.0026 22.9 4.6 52 193-247 1-52 (82)
40 2l4b_A Acyl carrier protein; i 26.4 21 0.0007 26.6 1.0 56 191-247 3-59 (88)
41 2icg_A LIN2918 protein; hypoth 26.2 99 0.0034 25.6 5.4 45 5-50 4-53 (160)
42 2cgq_A Acyl carrier protein AC 25.8 34 0.0012 27.6 2.3 48 294-350 26-73 (113)
43 3ce7_A Specific mitochodrial a 25.7 53 0.0018 25.9 3.4 52 295-350 15-71 (107)
44 1af8_A Actinorhodin polyketide 25.3 40 0.0014 24.8 2.4 50 300-350 6-56 (86)
45 1klp_A ACP, ACPM, meromycolate 25.3 74 0.0025 25.0 4.2 54 191-247 2-55 (115)
46 1dd4_C 50S ribosomal protein L 23.4 56 0.0019 22.0 2.6 19 23-41 15-33 (40)
47 3gzm_A Acyl carrier protein; h 23.0 64 0.0022 23.4 3.2 52 296-350 2-53 (81)
48 1vku_A Acyl carrier protein; T 22.5 87 0.003 24.4 4.0 54 190-247 11-64 (100)
49 2qnw_A Acyl carrier protein; m 22.1 61 0.0021 23.5 2.9 53 295-350 3-55 (82)
50 1dv5_A APO-DCP, APO-D-alanyl c 21.4 70 0.0024 23.4 3.1 52 193-247 1-52 (80)
51 2juo_A GA-binding protein alph 21.1 24 0.00082 27.9 0.4 33 16-50 7-39 (89)
52 2ns0_A Hypothetical protein; r 20.4 1.3E+02 0.0045 23.4 4.6 53 1-56 2-54 (85)
53 3ejb_A Acyl carrier protein; p 20.3 54 0.0019 25.2 2.4 54 294-350 17-70 (97)
No 1
>1v31_A Hypothetical protein RAFL11-05-P19; SWI/SNF complex subunit, structural genomics, riken structural genomics/proteomics initiative, RSGI; NMR {Arabidopsis thaliana} SCOP: a.42.1.1
Probab=99.95 E-value=2.8e-29 Score=204.34 Aligned_cols=89 Identities=26% Similarity=0.524 Sum_probs=84.7
Q ss_pred CCCCCCCccccCCHHHHHhhCCCCCCHHHHHHHHHHHHHHcCCCCCCCCCccccChhhhhhhhcCccChHHHHHHHHhcc
Q 018463 168 GGPGGLNKVCGVSPELQAVVGQPAMPRTEIVKQLWAYIRKNNLQDPSNKRKIICDDALRVVFETDCTDMFKMNKLLAKHI 247 (355)
Q Consensus 168 ~~~~g~~k~~~lSpeLa~~lG~~~~sR~evvk~LW~YIK~nnLQDp~nkr~I~cDdkLk~lF~~d~i~~~~m~klL~~Hl 247 (355)
+|..+++.+|.||++|++|||..++||++||++||+|||.||||||+|||.|+||++|+.|||+++|.||+|+++|++||
T Consensus 3 ~~~~~~p~~~~lS~~La~~lG~~~~sr~evvk~lW~YIK~n~Lqdp~~k~~I~cD~~L~~lfg~~~v~~~~~~klL~~Hl 82 (93)
T 1v31_A 3 SGSSGVPEKFKLSTALMDVLGIEVETRPRIIAAIWHYVKARKLQNPNDPSFFNCDAALQKVFGEEKLKFTMVSQKISHHL 82 (93)
T ss_dssp SSCCSSCCCEECCHHHHHHSCCSEECSHHHHHHHHHHHHHTTCBCSSCSSEEECCSHHHHHSCSSEEETTTTHHHHHHHC
T ss_pred CCCCCCCCccccCHHHHHHHCCCccCHHHHHHHHHHHHHHccCcCcccCceeehhHHHHHHhCCCcccHHHHHHHHHHhc
Confidence 35566779999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCCCCCccc
Q 018463 248 IPLEPTKES 256 (355)
Q Consensus 248 ~p~dp~~~~ 256 (355)
.|++|+..+
T Consensus 83 ~p~~Pi~~~ 91 (93)
T 1v31_A 83 SPPPPSGPS 91 (93)
T ss_dssp BCCCCSSCC
T ss_pred CCCCCeeCC
Confidence 999999754
No 2
>1uhr_A SWI/SNF related, matrix associated, actin dependent regulator of chromatin subfamily...; structural genomics, chromatin remodeling; NMR {Mus musculus} SCOP: a.42.1.1
Probab=99.94 E-value=3.2e-28 Score=198.14 Aligned_cols=83 Identities=28% Similarity=0.582 Sum_probs=80.1
Q ss_pred CccccCCHHHHHhhCCCCCCHHHHHHHHHHHHHHcCCCCCCCCCccccChhhhhhhhcCccChHHHHHHHHhccCCCCCC
Q 018463 174 NKVCGVSPELQAVVGQPAMPRTEIVKQLWAYIRKNNLQDPSNKRKIICDDALRVVFETDCTDMFKMNKLLAKHIIPLEPT 253 (355)
Q Consensus 174 ~k~~~lSpeLa~~lG~~~~sR~evvk~LW~YIK~nnLQDp~nkr~I~cDdkLk~lF~~d~i~~~~m~klL~~Hl~p~dp~ 253 (355)
..+|.||++|++|||..++||++||++||+|||.||||||+|||.|+||++|+.|||+++|.||+|+++|++||.|++|+
T Consensus 9 p~~~~lS~~La~~lG~~~~sr~evvk~lW~YIK~n~Lqdp~~k~~I~cD~~Lk~lfg~~~v~~~~~~klL~~Hl~p~~PI 88 (93)
T 1uhr_A 9 PPQFKLDPRLARLLGIHTQTRPVIIQALWQYIKTHKLQDPHEREFVLCDKYLQQIFESQRMKFSEIPQRLHALLMPPEPS 88 (93)
T ss_dssp CCEEEECTTHHHHTCCSEEEHHHHHHHHHHHHHHTTCBCSSCSSEECCCTTHHHHTCCSSEEGGGSHHHHHHHEECSSCC
T ss_pred CCccCcCHHHHHHHCCCccCHHHHHHHHHHHHHhccCCCccccceeechHHHHHHhCCCcccHHHHHHHHHHhcCCCCCe
Confidence 45799999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred ccc
Q 018463 254 KES 256 (355)
Q Consensus 254 ~~~ 256 (355)
..+
T Consensus 89 ~i~ 91 (93)
T 1uhr_A 89 GPS 91 (93)
T ss_dssp CSS
T ss_pred eCC
Confidence 754
No 3
>1v31_A Hypothetical protein RAFL11-05-P19; SWI/SNF complex subunit, structural genomics, riken structural genomics/proteomics initiative, RSGI; NMR {Arabidopsis thaliana} SCOP: a.42.1.1
Probab=99.93 E-value=9.5e-27 Score=189.41 Aligned_cols=80 Identities=21% Similarity=0.401 Sum_probs=76.0
Q ss_pred CCCCccccccHHHHHHhcCCCCccCHHHHHHHHHHHHHHcCCCCCCCCCcccCchhHHhhhccCccchhhHHHHHHhccC
Q 018463 272 ESGPSSVIISEALAKFLGTGGREMLQAEATKRVWEYIKVNHLEDPLNSMVILCDAKLRELLGCESISALGIQEMLARNHF 351 (355)
Q Consensus 272 ~~~~~~~~lS~~La~flG~~~~~~sR~evvk~lW~YIK~n~LqDp~nkr~I~CDekLk~Lfg~~~i~~~~~~klL~~H~~ 351 (355)
...+++|+||++||+|||.. ++||++|+++||+|||.||||||.||+.|+||++|+.|||+++|.||+|+++|++||.
T Consensus 6 ~~~p~~~~lS~~La~~lG~~--~~sr~evvk~lW~YIK~n~Lqdp~~k~~I~cD~~L~~lfg~~~v~~~~~~klL~~Hl~ 83 (93)
T 1v31_A 6 SGVPEKFKLSTALMDVLGIE--VETRPRIIAAIWHYVKARKLQNPNDPSFFNCDAALQKVFGEEKLKFTMVSQKISHHLS 83 (93)
T ss_dssp CSSCCCEECCHHHHHHSCCS--EECSHHHHHHHHHHHHHTTCBCSSCSSEEECCSHHHHHSCSSEEETTTTHHHHHHHCB
T ss_pred CCCCCccccCHHHHHHHCCC--ccCHHHHHHHHHHHHHHccCcCcccCceeehhHHHHHHhCCCcccHHHHHHHHHHhcC
Confidence 34689999999999999984 8999999999999999999999999999999999999999999999999999999997
Q ss_pred CC
Q 018463 352 LR 353 (355)
Q Consensus 352 ~~ 353 (355)
..
T Consensus 84 p~ 85 (93)
T 1v31_A 84 PP 85 (93)
T ss_dssp CC
T ss_pred CC
Confidence 64
No 4
>1v32_A AT5G08430, hypothetical protein RAFL09-47-K03; SWI/SNF complex subunit, structural genomics; NMR {Arabidopsis thaliana} SCOP: a.42.1.1
Probab=99.93 E-value=3.5e-26 Score=188.71 Aligned_cols=78 Identities=24% Similarity=0.371 Sum_probs=73.0
Q ss_pred cccccHHHHHHh---cCCC-CccCHHHHHHHHHHHHHHcCCCCCCCCCcccCchhHHhhhccCccchhhHHHHHHhccCC
Q 018463 277 SVIISEALAKFL---GTGG-REMLQAEATKRVWEYIKVNHLEDPLNSMVILCDAKLRELLGCESISALGIQEMLARNHFL 352 (355)
Q Consensus 277 ~~~lS~~La~fl---G~~~-~~~sR~evvk~lW~YIK~n~LqDp~nkr~I~CDekLk~Lfg~~~i~~~~~~klL~~H~~~ 352 (355)
.-++|++|++|| |.++ +++||++||++||+|||+||||||.|||.|+||++|+.|||+++|.||+|+++|.+||.+
T Consensus 13 ~~w~S~eLa~fl~~iG~~~~~~~sR~eVvk~lW~YIK~nnLQdp~~Kr~I~cD~kLk~lFg~~~v~~~~m~klL~~Hl~~ 92 (101)
T 1v32_A 13 VGWGSRQLIEFLHSLGKDTSEMISRYDVSDTIAKYISKEGLLDPSNKKKVVCDKRLVLLFGTRTIFRMKVYDLLEKHYKE 92 (101)
T ss_dssp SSSSCHHHHHHHHHHTCCCSSCCCHHHHHHHHHHHHHHHTCBCSSCTTEEECCSHHHHHTCCSEEETTHHHHHHHHHSCS
T ss_pred cccCCHHHHHHHHHcCCCCccccCHHHHHHHHHHHHHhhcCcCcccCCeeeccHHHHHHHCCCcccHHHHHHHHHHHcCc
Confidence 447999999999 8743 579999999999999999999999999999999999999999999999999999999998
Q ss_pred CC
Q 018463 353 RQ 354 (355)
Q Consensus 353 ~~ 354 (355)
++
T Consensus 93 ~~ 94 (101)
T 1v32_A 93 NQ 94 (101)
T ss_dssp CC
T ss_pred cc
Confidence 63
No 5
>1uhr_A SWI/SNF related, matrix associated, actin dependent regulator of chromatin subfamily...; structural genomics, chromatin remodeling; NMR {Mus musculus} SCOP: a.42.1.1
Probab=99.93 E-value=1.7e-26 Score=188.02 Aligned_cols=78 Identities=23% Similarity=0.447 Sum_probs=74.8
Q ss_pred CCccccccHHHHHHhcCCCCccCHHHHHHHHHHHHHHcCCCCCCCCCcccCchhHHhhhccCccchhhHHHHHHhccCCC
Q 018463 274 GPSSVIISEALAKFLGTGGREMLQAEATKRVWEYIKVNHLEDPLNSMVILCDAKLRELLGCESISALGIQEMLARNHFLR 353 (355)
Q Consensus 274 ~~~~~~lS~~La~flG~~~~~~sR~evvk~lW~YIK~n~LqDp~nkr~I~CDekLk~Lfg~~~i~~~~~~klL~~H~~~~ 353 (355)
.|++|+||++||+|+|.. ++||++|+++||+|||.||||||.||+.|+||++|+.|||+++|.||+|+++|++||...
T Consensus 8 ~p~~~~lS~~La~~lG~~--~~sr~evvk~lW~YIK~n~Lqdp~~k~~I~cD~~Lk~lfg~~~v~~~~~~klL~~Hl~p~ 85 (93)
T 1uhr_A 8 QPPQFKLDPRLARLLGIH--TQTRPVIIQALWQYIKTHKLQDPHEREFVLCDKYLQQIFESQRMKFSEIPQRLHALLMPP 85 (93)
T ss_dssp SCCEEEECTTHHHHTCCS--EEEHHHHHHHHHHHHHHTTCBCSSCSSEECCCTTHHHHTCCSSEEGGGSHHHHHHHEECS
T ss_pred CCCccCcCHHHHHHHCCC--ccCHHHHHHHHHHHHHhccCCCccccceeechHHHHHHhCCCcccHHHHHHHHHHhcCCC
Confidence 578999999999999984 999999999999999999999999999999999999999999999999999999999764
No 6
>1v32_A AT5G08430, hypothetical protein RAFL09-47-K03; SWI/SNF complex subunit, structural genomics; NMR {Arabidopsis thaliana} SCOP: a.42.1.1
Probab=99.92 E-value=2.2e-25 Score=183.94 Aligned_cols=76 Identities=32% Similarity=0.469 Sum_probs=71.7
Q ss_pred ccCCHHHHHhh---CC---CCCCHHHHHHHHHHHHHHcCCCCCCCCCccccChhhhhhhhcCccChHHHHHHHHhccCCC
Q 018463 177 CGVSPELQAVV---GQ---PAMPRTEIVKQLWAYIRKNNLQDPSNKRKIICDDALRVVFETDCTDMFKMNKLLAKHIIPL 250 (355)
Q Consensus 177 ~~lSpeLa~~l---G~---~~~sR~evvk~LW~YIK~nnLQDp~nkr~I~cDdkLk~lF~~d~i~~~~m~klL~~Hl~p~ 250 (355)
-.+|++|++|| |. .++||++||++||+|||+||||||.|||.|+||++|+.|||+++|.||+|+++|++||.+.
T Consensus 14 ~w~S~eLa~fl~~iG~~~~~~~sR~eVvk~lW~YIK~nnLQdp~~Kr~I~cD~kLk~lFg~~~v~~~~m~klL~~Hl~~~ 93 (101)
T 1v32_A 14 GWGSRQLIEFLHSLGKDTSEMISRYDVSDTIAKYISKEGLLDPSNKKKVVCDKRLVLLFGTRTIFRMKVYDLLEKHYKEN 93 (101)
T ss_dssp SSSCHHHHHHHHHHTCCCSSCCCHHHHHHHHHHHHHHHTCBCSSCTTEEECCSHHHHHTCCSEEETTHHHHHHHHHSCSC
T ss_pred ccCCHHHHHHHHHcCCCCccccCHHHHHHHHHHHHHhhcCcCcccCCeeeccHHHHHHHCCCcccHHHHHHHHHHHcCcc
Confidence 36899999999 98 5799999999999999999999999999999999999999999999999999999999876
Q ss_pred CC
Q 018463 251 EP 252 (355)
Q Consensus 251 dp 252 (355)
+.
T Consensus 94 ~e 95 (101)
T 1v32_A 94 QD 95 (101)
T ss_dssp CC
T ss_pred cc
Confidence 43
No 7
>1q1v_A DEK protein; winged-helix motif, DNA binding protein; NMR {Homo sapiens} SCOP: a.159.4.1
Probab=99.65 E-value=1.5e-16 Score=123.00 Aligned_cols=57 Identities=18% Similarity=0.388 Sum_probs=55.0
Q ss_pred CCCHHHHHHHHHHHhhhcCCCCCccHHHHHHHHHHHh-CCCCccchhHHHHHHHHHhcC
Q 018463 1 MVSDQEIAKGVETLLRQSDRNASTSLNGVVKQLEAKL-GLDLSHKAGFIRDQISLLLRS 58 (355)
Q Consensus 1 m~Sd~el~~~i~~iL~~aDL~t~~T~k~Vr~qLE~~f-gvDLs~kK~~I~~~i~~~l~~ 58 (355)
+|||++|...|++||++|||++ +|++.||++||++| |+||++||+||+.+|+.+|++
T Consensus 11 ~Psd~ei~~~I~~IL~~aDL~t-vT~K~VR~~Le~~~pg~dLs~kK~~I~~~I~~~L~~ 68 (70)
T 1q1v_A 11 PPTDEELKETIKKLLASANLEE-VTMKQICKKVYENYPTYDLTERKDFIKTTVKELISL 68 (70)
T ss_dssp CCCHHHHHHHHHHHHTTSCGGG-CCHHHHHHHHHHHCSSSCCSHHHHHHHHHHHHHHHS
T ss_pred CcCHHHHHHHHHHHHHhCCHHH-HhHHHHHHHHHHHccCCCChHHHHHHHHHHHHHHhc
Confidence 6999999999999999999997 99999999999999 999999999999999999975
No 8
>3dac_M MDM4 protein; MDMX, MDM4, HDMX, HDM4, MDM-4, MDM-X, MDM2, HDM2, nucleus, oncogene, apoptosis, cell cycle, disease mutation; 1.80A {Danio rerio}
Probab=97.49 E-value=0.00017 Score=61.10 Aligned_cols=76 Identities=28% Similarity=0.366 Sum_probs=65.7
Q ss_pred cccccHHHHHHh---cCCCCccCHHHHHHHHHHHHHHcCCCCCCCCCcccCc-hhHHhhhccCccchhh---HHHHHHhc
Q 018463 277 SVIISEALAKFL---GTGGREMLQAEATKRVWEYIKVNHLEDPLNSMVILCD-AKLRELLGCESISALG---IQEMLARN 349 (355)
Q Consensus 277 ~~~lS~~La~fl---G~~~~~~sR~evvk~lW~YIK~n~LqDp~nkr~I~CD-ekLk~Lfg~~~i~~~~---~~klL~~H 349 (355)
.++--+.|-.+| |......|..+|+-.+=+||-.+.|.||.+..+|.|- +.|.+|||+++|++.+ |.++|.++
T Consensus 24 ~Vrpk~~lL~iLq~aGA~~dvfT~keVm~YLgqYI~~KqLyd~~~qhiV~C~~D~LG~llGv~sFSVkdp~~L~~mL~~N 103 (130)
T 3dac_M 24 QVHPRAPLLQILKVAGAQEEVFTVKEVMHYLGQYIMMKQLYDKQRQHIVHCHDDPLGELLEVGSFSVKNPSPLYEMLKRN 103 (130)
T ss_dssp EEEECHHHHHHHHHTTCCCSSEEHHHHHHHHHHHHHHHTCBCSSSTTEEECTTSHHHHHHTSSEEETTSCHHHHHHHHHH
T ss_pred ecCCcHHHHHHHHHhccCcceeehHHHHHHHHHhhhhhhccCccccceeEeCCcccccccCCcceeecCcHHHHHHHHhh
Confidence 456666777776 6655689999999999999999999999999999995 5788999999999998 99999998
Q ss_pred cCC
Q 018463 350 HFL 352 (355)
Q Consensus 350 ~~~ 352 (355)
++.
T Consensus 104 Lv~ 106 (130)
T 3dac_M 104 LVI 106 (130)
T ss_dssp EEE
T ss_pred eec
Confidence 864
No 9
>3fea_A MDM4 protein; HDMX, HDM4,human MDM4, human MDMX, protein-protein interaction, metal-binding; HET: PM3 6CW; 1.33A {Homo sapiens} SCOP: a.42.1.0 PDB: 3fe7_A* 3u15_A* 2vyr_A 3lbj_E* 3fdo_A 3dab_A 3jzp_A 3jzo_A 3jzq_A 3eqy_A
Probab=97.18 E-value=0.00044 Score=56.32 Aligned_cols=77 Identities=30% Similarity=0.378 Sum_probs=65.0
Q ss_pred cccccHHHHHHh---cCCCCccCHHHHHHHHHHHHHHcCCCCCCCCCcccCc-hhHHhhhccCccchh---hHHHHHHhc
Q 018463 277 SVIISEALAKFL---GTGGREMLQAEATKRVWEYIKVNHLEDPLNSMVILCD-AKLRELLGCESISAL---GIQEMLARN 349 (355)
Q Consensus 277 ~~~lS~~La~fl---G~~~~~~sR~evvk~lW~YIK~n~LqDp~nkr~I~CD-ekLk~Lfg~~~i~~~---~~~klL~~H 349 (355)
.++--+.|-++| |......|..+|+-.+=+||-.+.|.||.+..+|.|. +.|-++||+++|++. .+.++|.+|
T Consensus 15 ~Vrpk~~lL~iLq~aGA~~d~fT~keVm~YLgqYI~~KqLyd~~~qhiV~C~~D~LG~l~G~~sFsvkdp~~l~~ml~~n 94 (100)
T 3fea_A 15 QVRPKLPLLKILHAAGAQGEMFTVKEVMHYLGQYIMVKQLYDQQEQHMVYCGGDLLGELLGRQSFSVKDPSPLYDMLRKN 94 (100)
T ss_dssp CBEECHHHHHHHHHTTCCSSCBCHHHHHHHHHHHHHHTTCEETTEEEEEECTTSHHHHHHTCSEEETTCCHHHHHHHHHH
T ss_pred ccCCcHHHHHHHHHhccCcceeehHHHHHHHHHhhhhhhccCccccceEEeCCCccccccCCcceeecCchHHHHHHHhh
Confidence 455566777776 6555689999999999999999999999999999995 567899999999988 889999998
Q ss_pred cCCC
Q 018463 350 HFLR 353 (355)
Q Consensus 350 ~~~~ 353 (355)
++.-
T Consensus 95 Lv~~ 98 (100)
T 3fea_A 95 LVTL 98 (100)
T ss_dssp EEC-
T ss_pred ceec
Confidence 8653
No 10
>2z5s_M MDM4 protein, zebrafish MDMX; MDMX, MDM4, acetylation, activator, anti-oncogene, apoptosis, cell cycle, cytoplasm, disease mutation, DNA- binding; 2.30A {Danio rerio} PDB: 2z5t_M
Probab=97.07 E-value=0.00081 Score=57.32 Aligned_cols=75 Identities=28% Similarity=0.342 Sum_probs=62.8
Q ss_pred cccccHHHHHHh---cCCCCccCHHHHHHHHHHHHHHcCCCCCCCCCcccCc-hhHHhhhccCccchhhHH---HHHHhc
Q 018463 277 SVIISEALAKFL---GTGGREMLQAEATKRVWEYIKVNHLEDPLNSMVILCD-AKLRELLGCESISALGIQ---EMLARN 349 (355)
Q Consensus 277 ~~~lS~~La~fl---G~~~~~~sR~evvk~lW~YIK~n~LqDp~nkr~I~CD-ekLk~Lfg~~~i~~~~~~---klL~~H 349 (355)
.++--+.|-+|| |......|+-+|+-.|-+||-.+.|.|+.+..+|.|. +.|-+||||.+|++-+.. ++|.+.
T Consensus 23 ~VrPk~~LLkiLq~aGA~~~~fT~keVm~YLGqYIm~KqLYD~~~qhiV~C~~D~LG~l~Gv~sFSVKdp~~ly~ML~~N 102 (140)
T 2z5s_M 23 QVHPRAPLLQILKVAGAQEEVFTLKEVMHYLGQYIMMKQLYDKQRQHIVHCHDDPLGELLEVGSFSVKNPSPVYEMLKRN 102 (140)
T ss_dssp CBEECHHHHHHHHHTTCCCSCBCHHHHHHHHHHHHHHHTCBCSSSTTEEECTTSHHHHHHTSSEEETTBCHHHHHHHHHH
T ss_pred eecCcHHHHHHHHHhCcccceeeHHHHHHHHHHHHHHhhhcccccCcEEeeCCcccccccCccceeecCcHHHHHHHHHh
Confidence 777888888888 5555689999999999999999999999999999996 556899999999887655 555554
Q ss_pred cC
Q 018463 350 HF 351 (355)
Q Consensus 350 ~~ 351 (355)
++
T Consensus 103 Lv 104 (140)
T 2z5s_M 103 LV 104 (140)
T ss_dssp EE
T ss_pred cc
Confidence 43
No 11
>1ycq_A MDM2, MDM2; anti-oncogene, DNA-binding, transcription regulation, nuclear protein, complex (oncogene protein/peptide), phosphorylation, activator; 2.30A {Xenopus laevis} SCOP: a.42.1.1
Probab=96.99 E-value=0.0015 Score=53.74 Aligned_cols=71 Identities=23% Similarity=0.320 Sum_probs=58.2
Q ss_pred cccccHHHHHHh---cCCCCccCHHHHHHHHHHHHHHcCCCCCCCCCcccCc-hhHHhhhccCccchhhHHHHHH
Q 018463 277 SVIISEALAKFL---GTGGREMLQAEATKRVWEYIKVNHLEDPLNSMVILCD-AKLRELLGCESISALGIQEMLA 347 (355)
Q Consensus 277 ~~~lS~~La~fl---G~~~~~~sR~evvk~lW~YIK~n~LqDp~nkr~I~CD-ekLk~Lfg~~~i~~~~~~klL~ 347 (355)
.++-.+.|.++| |......|+.+|+-.+-+||-.+.|.|+.+.++|.|. +.|-+|||+.+|++-+...+..
T Consensus 11 ~VrPk~~LLklL~~~GA~~~~fT~keVm~YLgqYI~~KqLyd~~~qhiV~C~~D~LG~l~g~~~Fsvkdp~~l~~ 85 (107)
T 1ycq_A 11 LVQPTPLLLSLLKSAGAQKETFTMKEVIYHLGQYIMAKQLYDEKQQHIVHCSNDPLGELFGVQEFSVKEPRRLYA 85 (107)
T ss_dssp CBEECHHHHHHHHHTTCCCSCBCHHHHHHHHHHHHHHHTCBCSSSTTEEECTTSHHHHHHTCSEEETTCHHHHHH
T ss_pred ccCccHHHHHHHHHhccccceeeehhhhhhHHHHHhHHhhcccccCcEEeeCCcccccccCccceeecCcHHHHH
Confidence 455566677766 5544689999999999999999999999999999996 5568999999999887664443
No 12
>3dac_M MDM4 protein; MDMX, MDM4, HDMX, HDM4, MDM-4, MDM-X, MDM2, HDM2, nucleus, oncogene, apoptosis, cell cycle, disease mutation; 1.80A {Danio rerio}
Probab=96.90 E-value=0.00091 Score=56.66 Aligned_cols=76 Identities=18% Similarity=0.341 Sum_probs=64.4
Q ss_pred ccCCHHHHHhh---CC--CCCCHHHHHHHHHHHHHHcCCCCCCCCCccccC-hhhhhhhhcCccChHH---HHHHHHhcc
Q 018463 177 CGVSPELQAVV---GQ--PAMPRTEIVKQLWAYIRKNNLQDPSNKRKIICD-DALRVVFETDCTDMFK---MNKLLAKHI 247 (355)
Q Consensus 177 ~~lSpeLa~~l---G~--~~~sR~evvk~LW~YIK~nnLQDp~nkr~I~cD-dkLk~lF~~d~i~~~~---m~klL~~Hl 247 (355)
.+--++|-.+| |. ...|..+|+-.|.+||-.+.|.||.+...|.|- |.|..+||+++|.+-+ +.+.|.++|
T Consensus 25 Vrpk~~lL~iLq~aGA~~dvfT~keVm~YLgqYI~~KqLyd~~~qhiV~C~~D~LG~llGv~sFSVkdp~~L~~mL~~NL 104 (130)
T 3dac_M 25 VHPRAPLLQILKVAGAQEEVFTVKEVMHYLGQYIMMKQLYDKQRQHIVHCHDDPLGELLEVGSFSVKNPSPLYEMLKRNL 104 (130)
T ss_dssp EEECHHHHHHHHHTTCCCSSEEHHHHHHHHHHHHHHHTCBCSSSTTEEECTTSHHHHHHTSSEEETTSCHHHHHHHHHHE
T ss_pred cCCcHHHHHHHHHhccCcceeehHHHHHHHHHhhhhhhccCccccceeEeCCcccccccCCcceeecCcHHHHHHHHhhe
Confidence 33456666665 54 578999999999999999999999999999996 8899999999999987 999999999
Q ss_pred CCCCC
Q 018463 248 IPLEP 252 (355)
Q Consensus 248 ~p~dp 252 (355)
+++..
T Consensus 105 v~~~~ 109 (130)
T 3dac_M 105 VILNN 109 (130)
T ss_dssp EEC--
T ss_pred ecccC
Confidence 99874
No 13
>2axi_A Ubiquitin-protein ligase E3 MDM2; drug design, protein-protein interactions, ligase, LIGA inhibitor complex; HET: 6CW MPO; 1.40A {Homo sapiens} SCOP: a.42.1.1 PDB: 1ycr_A 2gv2_A* 1t4f_M* 3jzr_A 3g03_A 3tu1_A* 3jzk_A* 1t4e_A* 3lbl_A* 4dij_A* 3lbk_A* 3v3b_A* 3jzs_A 3eqs_A 3iux_A* 3iwy_A* 3lnj_A* 3lnz_A 1rv1_A* 1ttv_A*
Probab=96.68 E-value=0.0014 Score=54.49 Aligned_cols=71 Identities=23% Similarity=0.283 Sum_probs=58.3
Q ss_pred cccccHHHHHHh---cCCCCccCHHHHHHHHHHHHHHcCCCCCCCCCcccCc-hhHHhhhccCccchhhHHHHHH
Q 018463 277 SVIISEALAKFL---GTGGREMLQAEATKRVWEYIKVNHLEDPLNSMVILCD-AKLRELLGCESISALGIQEMLA 347 (355)
Q Consensus 277 ~~~lS~~La~fl---G~~~~~~sR~evvk~lW~YIK~n~LqDp~nkr~I~CD-ekLk~Lfg~~~i~~~~~~klL~ 347 (355)
.++-.+.|.++| |......|..+|+-.+-+||-.+.|.|+.+..+|.|. +.|-+||||.+|++-+...+..
T Consensus 11 ~VrPk~~LLklLq~~GA~~~vfT~keVm~YLgqYIm~KqLyd~~~qhiV~C~~D~LG~l~g~~~Fsvkdp~~l~~ 85 (115)
T 2axi_A 11 LVRPKPLLLKLLKSVGAQKDTYTMKEVLFYLGQYIMTKRLYDEKQQHIVYCSNDLLGDLFGVPSFSVKEHRKIYT 85 (115)
T ss_dssp EEEECHHHHHHHHHTTCCCSCEEHHHHHHHHHHHHHHHTCEETTEEEEEECTTSHHHHHHSSSEEETTCHHHHHH
T ss_pred ccCccHHHHHHHHHhccccceeechhheehhhhhhhHhhhcccccCcEEeeCCcccccccCccceeecCcHHHHH
Confidence 455666777776 5444579999999999999999999999999999996 5568999999998886555544
No 14
>3fea_A MDM4 protein; HDMX, HDM4,human MDM4, human MDMX, protein-protein interaction, metal-binding; HET: PM3 6CW; 1.33A {Homo sapiens} SCOP: a.42.1.0 PDB: 3fe7_A* 3u15_A* 2vyr_A 3lbj_E* 3fdo_A 3dab_A 3jzp_A 3jzo_A 3jzq_A 3eqy_A
Probab=96.64 E-value=0.0017 Score=52.84 Aligned_cols=74 Identities=19% Similarity=0.329 Sum_probs=61.8
Q ss_pred cCCHHHHHhh---CC--CCCCHHHHHHHHHHHHHHcCCCCCCCCCccccC-hhhhhhhhcCccChH---HHHHHHHhccC
Q 018463 178 GVSPELQAVV---GQ--PAMPRTEIVKQLWAYIRKNNLQDPSNKRKIICD-DALRVVFETDCTDMF---KMNKLLAKHII 248 (355)
Q Consensus 178 ~lSpeLa~~l---G~--~~~sR~evvk~LW~YIK~nnLQDp~nkr~I~cD-dkLk~lF~~d~i~~~---~m~klL~~Hl~ 248 (355)
+--++|-.+| |. +..|..+|+-.|-+||-.+.|.||.+...|.|. |.|-.+||+++|.+- .+.+.|.++|+
T Consensus 17 rpk~~lL~iLq~aGA~~d~fT~keVm~YLgqYI~~KqLyd~~~qhiV~C~~D~LG~l~G~~sFsvkdp~~l~~ml~~nLv 96 (100)
T 3fea_A 17 RPKLPLLKILHAAGAQGEMFTVKEVMHYLGQYIMVKQLYDQQEQHMVYCGGDLLGELLGRQSFSVKDPSPLYDMLRKNLV 96 (100)
T ss_dssp EECHHHHHHHHHTTCCSSCBCHHHHHHHHHHHHHHTTCEETTEEEEEECTTSHHHHHHTCSEEETTCCHHHHHHHHHHEE
T ss_pred CCcHHHHHHHHHhccCcceeehHHHHHHHHHhhhhhhccCccccceEEeCCCccccccCCcceeecCchHHHHHHHhhce
Confidence 3355666665 54 578999999999999999999999999999996 788999999999886 88888999987
Q ss_pred CCC
Q 018463 249 PLE 251 (355)
Q Consensus 249 p~d 251 (355)
.+.
T Consensus 97 ~~~ 99 (100)
T 3fea_A 97 TLA 99 (100)
T ss_dssp C--
T ss_pred ecC
Confidence 654
No 15
>1z1m_A Ubiquitin-protein ligase E3 MDM2; peptide-binding groove, psudosymmetry, alpha-beta domains; NMR {Homo sapiens}
Probab=96.52 E-value=0.0047 Score=51.62 Aligned_cols=72 Identities=22% Similarity=0.268 Sum_probs=57.4
Q ss_pred ccccHHHHHHh---cCCCCccCHHHHHHHHHHHHHHcCCCCCCCCCcccCc-hhHHhhhccCccchhhHHHHHHhc
Q 018463 278 VIISEALAKFL---GTGGREMLQAEATKRVWEYIKVNHLEDPLNSMVILCD-AKLRELLGCESISALGIQEMLARN 349 (355)
Q Consensus 278 ~~lS~~La~fl---G~~~~~~sR~evvk~lW~YIK~n~LqDp~nkr~I~CD-ekLk~Lfg~~~i~~~~~~klL~~H 349 (355)
++-.+.|.+|| |......|..+|+-.+-+||-.+.|.|+.+.++|.|. +.|-+|||+.+|++-+...+...|
T Consensus 28 VrPk~~LLkiLq~aGA~~~vfT~keV~~YLgqYIm~KqLyd~~~qhiV~C~~D~LG~l~g~~~Fsvkdp~~l~~ml 103 (119)
T 1z1m_A 28 VRPKPLLLKLLKSVGAQKDTYTMKEVLFYLGQYIMTKRLYDEKQQHIVYCSNDLLGDLFGVPSFSVKEHRKIYTMI 103 (119)
T ss_dssp CCCSTTSHHHHHHHTCCCSCCCTTHHHHHHHHHHHTTTCSCSSSSCEECCTTSHHHHHSCCSCEETTCHHHHHHHH
T ss_pred ccccHHHHHHHHHhccccceeechheeehhhhhhhHhhhcccccCcEEeeCCcccccccCccceeecCcHHHHHHH
Confidence 34444445554 5555689999999999999999999999999999996 556899999999988766665543
No 16
>2z5s_M MDM4 protein, zebrafish MDMX; MDMX, MDM4, acetylation, activator, anti-oncogene, apoptosis, cell cycle, cytoplasm, disease mutation, DNA- binding; 2.30A {Danio rerio} PDB: 2z5t_M
Probab=96.46 E-value=0.0032 Score=53.65 Aligned_cols=76 Identities=18% Similarity=0.332 Sum_probs=62.3
Q ss_pred cccCCHHHHHhh---CC--CCCCHHHHHHHHHHHHHHcCCCCCCCCCccccC-hhhhhhhhcCccChHH---HHHHHHhc
Q 018463 176 VCGVSPELQAVV---GQ--PAMPRTEIVKQLWAYIRKNNLQDPSNKRKIICD-DALRVVFETDCTDMFK---MNKLLAKH 246 (355)
Q Consensus 176 ~~~lSpeLa~~l---G~--~~~sR~evvk~LW~YIK~nnLQDp~nkr~I~cD-dkLk~lF~~d~i~~~~---m~klL~~H 246 (355)
..+--+.|-.|| |. ...|+-+|+-.|.+||-.+.|.|+.+..+|.|. |.|-.+||+++|.+-+ +.+.|.+-
T Consensus 23 ~VrPk~~LLkiLq~aGA~~~~fT~keVm~YLGqYIm~KqLYD~~~qhiV~C~~D~LG~l~Gv~sFSVKdp~~ly~ML~~N 102 (140)
T 2z5s_M 23 QVHPRAPLLQILKVAGAQEEVFTLKEVMHYLGQYIMMKQLYDKQRQHIVHCHDDPLGELLEVGSFSVKNPSPVYEMLKRN 102 (140)
T ss_dssp CBEECHHHHHHHHHTTCCCSCBCHHHHHHHHHHHHHHHTCBCSSSTTEEECTTSHHHHHHTSSEEETTBCHHHHHHHHHH
T ss_pred eecCcHHHHHHHHHhCcccceeeHHHHHHHHHHHHHHhhhcccccCcEEeeCCcccccccCccceeecCcHHHHHHHHHh
Confidence 455567787776 54 578999999999999999999999999999996 7789999999998864 44667777
Q ss_pred cCCCC
Q 018463 247 IIPLE 251 (355)
Q Consensus 247 l~p~d 251 (355)
|++..
T Consensus 103 Lv~~~ 107 (140)
T 2z5s_M 103 LVILN 107 (140)
T ss_dssp EECC-
T ss_pred ccccc
Confidence 77665
No 17
>1z1m_A Ubiquitin-protein ligase E3 MDM2; peptide-binding groove, psudosymmetry, alpha-beta domains; NMR {Homo sapiens}
Probab=96.31 E-value=0.0057 Score=51.12 Aligned_cols=64 Identities=19% Similarity=0.218 Sum_probs=54.3
Q ss_pred CCCCHHHHHHHHHHHHHHcCCCCCCCCCccccC-hhhhhhhhcCccChHHHHHHHHhccCCCCCC
Q 018463 190 PAMPRTEIVKQLWAYIRKNNLQDPSNKRKIICD-DALRVVFETDCTDMFKMNKLLAKHIIPLEPT 253 (355)
Q Consensus 190 ~~~sR~evvk~LW~YIK~nnLQDp~nkr~I~cD-dkLk~lF~~d~i~~~~m~klL~~Hl~p~dp~ 253 (355)
...|+.+|+-.|.+||-.+.|.|+.+...|.|. |.|-.+||+++|.+-+-..+...|...+-..
T Consensus 46 ~vfT~keV~~YLgqYIm~KqLyd~~~qhiV~C~~D~LG~l~g~~~Fsvkdp~~l~~ml~~nLv~~ 110 (119)
T 1z1m_A 46 DTYTMKEVLFYLGQYIMTKRLYDEKQQHIVYCSNDLLGDLFGVPSFSVKEHRKIYTMIYRNLVVV 110 (119)
T ss_dssp SCCCTTHHHHHHHHHHHTTTCSCSSSSCEECCTTSHHHHHSCCSCEETTCHHHHHHHHSCSCCCC
T ss_pred ceeechheeehhhhhhhHhhhcccccCcEEeeCCcccccccCccceeecCcHHHHHHHHHhcccc
Confidence 577889999999999999999999999999997 7779999999999987666666665554443
No 18
>1ycq_A MDM2, MDM2; anti-oncogene, DNA-binding, transcription regulation, nuclear protein, complex (oncogene protein/peptide), phosphorylation, activator; 2.30A {Xenopus laevis} SCOP: a.42.1.1
Probab=96.28 E-value=0.006 Score=50.19 Aligned_cols=75 Identities=17% Similarity=0.362 Sum_probs=59.1
Q ss_pred ccCCHHHHHhh---CC--CCCCHHHHHHHHHHHHHHcCCCCCCCCCccccC-hhhhhhhhcCccChHHHH---HHHHhcc
Q 018463 177 CGVSPELQAVV---GQ--PAMPRTEIVKQLWAYIRKNNLQDPSNKRKIICD-DALRVVFETDCTDMFKMN---KLLAKHI 247 (355)
Q Consensus 177 ~~lSpeLa~~l---G~--~~~sR~evvk~LW~YIK~nnLQDp~nkr~I~cD-dkLk~lF~~d~i~~~~m~---klL~~Hl 247 (355)
.+-.+.|-.+| |. ...|+.+|+-.|.+||-.+.|.|+.+...|.|. |.|-.+||+++|.+-+-. +.|.+-+
T Consensus 12 VrPk~~LLklL~~~GA~~~~fT~keVm~YLgqYI~~KqLyd~~~qhiV~C~~D~LG~l~g~~~Fsvkdp~~l~~ml~~nL 91 (107)
T 1ycq_A 12 VQPTPLLLSLLKSAGAQKETFTMKEVIYHLGQYIMAKQLYDEKQQHIVHCSNDPLGELFGVQEFSVKEPRRLYAMISRNL 91 (107)
T ss_dssp BEECHHHHHHHHHTTCCCSCBCHHHHHHHHHHHHHHHTCBCSSSTTEEECTTSHHHHHHTCSEEETTCHHHHHHHHHTTE
T ss_pred cCccHHHHHHHHHhccccceeeehhhhhhHHHHHhHHhhcccccCcEEeeCCcccccccCccceeecCcHHHHHHHHHhc
Confidence 34455665555 54 578899999999999999999999999999997 777999999999887655 5555555
Q ss_pred CCCC
Q 018463 248 IPLE 251 (355)
Q Consensus 248 ~p~d 251 (355)
++..
T Consensus 92 v~~~ 95 (107)
T 1ycq_A 92 VSAN 95 (107)
T ss_dssp EESC
T ss_pred cccc
Confidence 5544
No 19
>2axi_A Ubiquitin-protein ligase E3 MDM2; drug design, protein-protein interactions, ligase, LIGA inhibitor complex; HET: 6CW MPO; 1.40A {Homo sapiens} SCOP: a.42.1.1 PDB: 1ycr_A 2gv2_A* 1t4f_M* 3jzr_A 3g03_A 3tu1_A* 3jzk_A* 1t4e_A* 3lbl_A* 4dij_A* 3lbk_A* 3v3b_A* 3jzs_A 3eqs_A 3iux_A* 3iwy_A* 3lnj_A* 3lnz_A 1rv1_A* 1ttv_A*
Probab=95.76 E-value=0.0052 Score=51.06 Aligned_cols=71 Identities=20% Similarity=0.277 Sum_probs=56.3
Q ss_pred ccCCHHHHHhh---CC--CCCCHHHHHHHHHHHHHHcCCCCCCCCCccccC-hhhhhhhhcCccChHHHHHHHHhcc
Q 018463 177 CGVSPELQAVV---GQ--PAMPRTEIVKQLWAYIRKNNLQDPSNKRKIICD-DALRVVFETDCTDMFKMNKLLAKHI 247 (355)
Q Consensus 177 ~~lSpeLa~~l---G~--~~~sR~evvk~LW~YIK~nnLQDp~nkr~I~cD-dkLk~lF~~d~i~~~~m~klL~~Hl 247 (355)
.+-.+.|-.+| |. ...|+.+|+-.|.+||-.+.|.|+.+...|.|. |.|-.+||+++|.+-+-..+...+.
T Consensus 12 VrPk~~LLklLq~~GA~~~vfT~keVm~YLgqYIm~KqLyd~~~qhiV~C~~D~LG~l~g~~~Fsvkdp~~l~~ml~ 88 (115)
T 2axi_A 12 VRPKPLLLKLLKSVGAQKDTYTMKEVLFYLGQYIMTKRLYDEKQQHIVYCSNDLLGDLFGVPSFSVKEHRKIYTMIY 88 (115)
T ss_dssp EEECHHHHHHHHHTTCCCSCEEHHHHHHHHHHHHHHHTCEETTEEEEEECTTSHHHHHHSSSEEETTCHHHHHHHHH
T ss_pred cCccHHHHHHHHHhccccceeechhheehhhhhhhHhhhcccccCcEEeeCCcccccccCccceeecCcHHHHHHHH
Confidence 34455666665 54 567889999999999999999999999999997 7779999999998875555444443
No 20
>2kwl_A ACP, acyl carrier protein; structural genomics, seattle structura genomics center for infectious disease, ssgcid, lipid bindi protein; NMR {Borrelia burgdorferi}
Probab=72.07 E-value=4.3 Score=30.17 Aligned_cols=57 Identities=19% Similarity=0.310 Sum_probs=46.8
Q ss_pred CCCCCCHHHHHHHHHHHHHHcCCCCCCCCCccccChhhhhhhhcCccChHHHHHHHHhcc
Q 018463 188 GQPAMPRTEIVKQLWAYIRKNNLQDPSNKRKIICDDALRVVFETDCTDMFKMNKLLAKHI 247 (355)
Q Consensus 188 G~~~~sR~evvk~LW~YIK~nnLQDp~nkr~I~cDdkLk~lF~~d~i~~~~m~klL~~Hl 247 (355)
|...|+|.+|...|.++|.+.--.+ ...|..|..|..-+|.|++.+.++...|..+|
T Consensus 1 ~~~~m~~~~i~~~l~~~i~~~l~~~---~~~i~~~~~l~~dlG~DSl~~vel~~~le~~f 57 (84)
T 2kwl_A 1 GPGSMDNDEIFSKVRSIISEQLDKK---EDEITTDSRFVEDLNADSLDIYELLYLLEEAF 57 (84)
T ss_dssp CCCCSTHHHHHHHHHHHHHHHHCCC---GGGCCTTTHHHHTSSSCHHHHHHHHHHHHHHH
T ss_pred CCCCCCHHHHHHHHHHHHHHHhCCC---cccCCCCCchhhhcCCCHHHHHHHHHHHHHHH
Confidence 5678999999999999997753222 24688999997789999999999999998877
No 21
>2kwl_A ACP, acyl carrier protein; structural genomics, seattle structura genomics center for infectious disease, ssgcid, lipid bindi protein; NMR {Borrelia burgdorferi}
Probab=65.08 E-value=6.9 Score=28.98 Aligned_cols=54 Identities=19% Similarity=0.167 Sum_probs=44.6
Q ss_pred ccCHHHHHHHHHHHHHHcCCCCCCCCCcccCchhHHhhhccCccchhhHHHHHHhcc
Q 018463 294 EMLQAEATKRVWEYIKVNHLEDPLNSMVILCDAKLRELLGCESISALGIQEMLARNH 350 (355)
Q Consensus 294 ~~sR~evvk~lW~YIK~n~LqDp~nkr~I~CDekLk~Lfg~~~i~~~~~~klL~~H~ 350 (355)
.|+|.+|...|.++|.+.--.+ ...|..|..|..-+|.+|+.+.+|.-.|..+|
T Consensus 4 ~m~~~~i~~~l~~~i~~~l~~~---~~~i~~~~~l~~dlG~DSl~~vel~~~le~~f 57 (84)
T 2kwl_A 4 SMDNDEIFSKVRSIISEQLDKK---EDEITTDSRFVEDLNADSLDIYELLYLLEEAF 57 (84)
T ss_dssp CSTHHHHHHHHHHHHHHHHCCC---GGGCCTTTHHHHTSSSCHHHHHHHHHHHHHHH
T ss_pred CCCHHHHHHHHHHHHHHHhCCC---cccCCCCCchhhhcCCCHHHHHHHHHHHHHHH
Confidence 6999999999999998863222 34688999997779999999999998888776
No 22
>1f80_D Acyl carrier protein; transferase; HET: PN2; 2.30A {Bacillus subtilis} SCOP: a.28.1.1 PDB: 2x2b_A* 1hy8_A
Probab=59.27 E-value=7.1 Score=28.55 Aligned_cols=54 Identities=19% Similarity=0.195 Sum_probs=41.9
Q ss_pred ccCHHHHHHHHHHHHHHcCCCCCCCCCcccCchhHHhhhccCccchhhHHHHHHhcc
Q 018463 294 EMLQAEATKRVWEYIKVNHLEDPLNSMVILCDAKLRELLGCESISALGIQEMLARNH 350 (355)
Q Consensus 294 ~~sR~evvk~lW~YIK~n~LqDp~nkr~I~CDekLk~Lfg~~~i~~~~~~klL~~H~ 350 (355)
.|++.++...|.++|.+.-=.+ ...|-.|..|..-+|.+|+.+.+|...|..+|
T Consensus 2 ~m~~~~i~~~l~~~l~~~l~~~---~~~i~~~~~l~~dlG~DSl~~vel~~~le~~f 55 (81)
T 1f80_D 2 PLGSADTLERVTKIIVDRLGVD---EADVKLEASFKEDLGADXLDVVELVMELEDEF 55 (81)
T ss_dssp ---CCHHHHHHHHHHHHHSSCC---SSCCCTTCBHHHHSCCCHHHHHHHHHHHHHHT
T ss_pred CCCHHHHHHHHHHHHHHHHCCC---HHhCCCccchHHHcCCcHHHHHHHHHHHHHHh
Confidence 5889999999999998764223 24588999997789999999999999888876
No 23
>2lol_A ACP, acyl carrier protein; lipid transport; NMR {Rickettsia prowazekii str}
Probab=55.32 E-value=16 Score=26.58 Aligned_cols=53 Identities=15% Similarity=0.211 Sum_probs=42.0
Q ss_pred cCHHHHHHHHHHHHHHcCCCCCCCCCcccCchhHHhhhccCccchhhHHHHHHhcc
Q 018463 295 MLQAEATKRVWEYIKVNHLEDPLNSMVILCDAKLRELLGCESISALGIQEMLARNH 350 (355)
Q Consensus 295 ~sR~evvk~lW~YIK~n~LqDp~nkr~I~CDekLk~Lfg~~~i~~~~~~klL~~H~ 350 (355)
|+|.++...|.++|.+.-=.+ ...|-.|..|..-+|.+|+.+.+|...|..+|
T Consensus 2 m~~~~i~~~l~~ii~~~l~~~---~~~i~~~~~l~~dlG~DSl~~~el~~~le~~f 54 (81)
T 2lol_A 2 STTDKIEQKVIEMVAEKLNKD---KAIITTDSRFIEDLKADSLDTVELMMAIEVEY 54 (81)
T ss_dssp CSHHHHHHHHHHHHHHHSCCC---TTTCCTTCCHHHHTTCCHHHHHHHHHHHHHHH
T ss_pred CCHHHHHHHHHHHHHHHHCCC---hhhCCCCCcHHHhcCCcHHHHHHHHHHHHHHH
Confidence 788999999999888753222 23588899987778999999999988888776
No 24
>2cnr_A FAS, ACP, acyl carrier protein; polykdetide, phosphopantetheine, lipid transport; NMR {Streptomyces coelicolor} PDB: 2koo_A* 2kop_A* 2koq_A* 2kor_A* 2kos_A*
Probab=54.15 E-value=15 Score=26.63 Aligned_cols=54 Identities=13% Similarity=0.033 Sum_probs=42.3
Q ss_pred ccCHHHHHHHHHHHHHHcCCCCCCCCCcccCchhHHhhhccCccchhhHHHHHHhcc
Q 018463 294 EMLQAEATKRVWEYIKVNHLEDPLNSMVILCDAKLRELLGCESISALGIQEMLARNH 350 (355)
Q Consensus 294 ~~sR~evvk~lW~YIK~n~LqDp~nkr~I~CDekLk~Lfg~~~i~~~~~~klL~~H~ 350 (355)
.|+|.++...|.++|.+.-=.+ ...|-.|..|..-+|.+|+.+.+|...|..+|
T Consensus 2 ~m~~~~i~~~l~~~i~~~l~~~---~~~i~~~~~l~~dlG~DSl~~~~l~~~le~~f 55 (82)
T 2cnr_A 2 AATQEEIVAGLAEIVNEIAGIP---VEDVKLDKSFTDDLDVDSLSMVEVVVAAEERF 55 (82)
T ss_dssp CCCHHHHHHHHHHHHHHHSCCC---TTTCCTTSBTTTTSCCCHHHHHHHHHHHHGGG
T ss_pred CCCHHHHHHHHHHHHHHHhCCC---HHHCCCCcchhhccCCChHHHHHHHHHHHHHh
Confidence 3889999999999998754222 23578888886667899999999999888876
No 25
>1x3o_A Acyl carrier protein; structural genomics, riken structural genomics/proteomics in RSGI, NPPSFA; 1.50A {Thermus thermophilus}
Probab=46.26 E-value=13 Score=26.79 Aligned_cols=53 Identities=19% Similarity=0.199 Sum_probs=39.9
Q ss_pred cCHHHHHHHHHHHHHHcCCCCCCCCCcccCchhHHhhhccCccchhhHHHHHHhcc
Q 018463 295 MLQAEATKRVWEYIKVNHLEDPLNSMVILCDAKLRELLGCESISALGIQEMLARNH 350 (355)
Q Consensus 295 ~sR~evvk~lW~YIK~n~LqDp~nkr~I~CDekLk~Lfg~~~i~~~~~~klL~~H~ 350 (355)
|+|.++...|.++|.+.-=.+ ...|-.|..|..-+|.+|+.+.+|...|..+|
T Consensus 1 M~~~~i~~~l~~~i~~~l~~~---~~~i~~~~~l~~~lG~DSl~~~~l~~~le~~f 53 (80)
T 1x3o_A 1 MTEQEIFEKVKAVIADKLQVE---PEKVTLEARFIEDLGADSLDTVELIMGLEDEF 53 (80)
T ss_dssp CCHHHHHHHHHHHHHHHHTCC---GGGCCTTCBTTTTTCCCHHHHHHHHHHHHHHH
T ss_pred CCHHHHHHHHHHHHHHHhCCC---HHHCCCcCcHHhhcCccHHHHHHHHHHHHHHH
Confidence 678888888888887652112 23577888886678999999999888887766
No 26
>1f80_D Acyl carrier protein; transferase; HET: PN2; 2.30A {Bacillus subtilis} SCOP: a.28.1.1 PDB: 2x2b_A* 1hy8_A
Probab=45.13 E-value=17 Score=26.43 Aligned_cols=54 Identities=9% Similarity=0.145 Sum_probs=41.5
Q ss_pred CCCHHHHHHHHHHHHHHcCCCCCCCCCccccChhhhhhhhcCccChHHHHHHHHhcc
Q 018463 191 AMPRTEIVKQLWAYIRKNNLQDPSNKRKIICDDALRVVFETDCTDMFKMNKLLAKHI 247 (355)
Q Consensus 191 ~~sR~evvk~LW~YIK~nnLQDp~nkr~I~cDdkLk~lF~~d~i~~~~m~klL~~Hl 247 (355)
.|+|.+|...|.++|.+.-=.+ ...|..|..|..-+|.|++.+.++...|..+|
T Consensus 2 ~m~~~~i~~~l~~~l~~~l~~~---~~~i~~~~~l~~dlG~DSl~~vel~~~le~~f 55 (81)
T 1f80_D 2 PLGSADTLERVTKIIVDRLGVD---EADVKLEASFKEDLGADXLDVVELVMELEDEF 55 (81)
T ss_dssp ---CCHHHHHHHHHHHHHSSCC---SSCCCTTCBHHHHSCCCHHHHHHHHHHHHHHT
T ss_pred CCCHHHHHHHHHHHHHHHHCCC---HHhCCCccchHHHcCCcHHHHHHHHHHHHHHh
Confidence 5788889999999887653222 24688999997889999999999999998777
No 27
>2lol_A ACP, acyl carrier protein; lipid transport; NMR {Rickettsia prowazekii str}
Probab=42.45 E-value=36 Score=24.58 Aligned_cols=53 Identities=13% Similarity=0.150 Sum_probs=42.4
Q ss_pred CCHHHHHHHHHHHHHHcCCCCCCCCCccccChhhhhhhhcCccChHHHHHHHHhcc
Q 018463 192 MPRTEIVKQLWAYIRKNNLQDPSNKRKIICDDALRVVFETDCTDMFKMNKLLAKHI 247 (355)
Q Consensus 192 ~sR~evvk~LW~YIK~nnLQDp~nkr~I~cDdkLk~lF~~d~i~~~~m~klL~~Hl 247 (355)
|+|.++...|.++|.+.-=.+ ...|..|..|..-+|.|++.+.++...|..+|
T Consensus 2 m~~~~i~~~l~~ii~~~l~~~---~~~i~~~~~l~~dlG~DSl~~~el~~~le~~f 54 (81)
T 2lol_A 2 STTDKIEQKVIEMVAEKLNKD---KAIITTDSRFIEDLKADSLDTVELMMAIEVEY 54 (81)
T ss_dssp CSHHHHHHHHHHHHHHHSCCC---TTTCCTTCCHHHHTTCCHHHHHHHHHHHHHHH
T ss_pred CCHHHHHHHHHHHHHHHHCCC---hhhCCCCCcHHHhcCCcHHHHHHHHHHHHHHH
Confidence 788999888888887643222 23588888887778999999999999998877
No 28
>2dnw_A Acyl carrier protein; ACP, fatty acid biosynthesis, mitochondria, NADH:ubiquinone oxidereductase, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=41.52 E-value=29 Score=26.65 Aligned_cols=58 Identities=12% Similarity=0.182 Sum_probs=44.9
Q ss_pred hCCCCCCHHHHHHHHHHHHHHcCCCCCCCCCccccChhhhhhhhcCccChHHHHHHHHhcc
Q 018463 187 VGQPAMPRTEIVKQLWAYIRKNNLQDPSNKRKIICDDALRVVFETDCTDMFKMNKLLAKHI 247 (355)
Q Consensus 187 lG~~~~sR~evvk~LW~YIK~nnLQDp~nkr~I~cDdkLk~lF~~d~i~~~~m~klL~~Hl 247 (355)
.++..|++.+|...|.+.|.+.---+ ...|..|..|..-+|.|++.+.+|...|..+|
T Consensus 6 ~~m~~m~~~~i~~~l~~~l~~~l~~~---~~~i~~d~~l~~dlG~DSL~~vel~~~le~~f 63 (99)
T 2dnw_A 6 SGMPPLTLEGIQDRVLYVLKLYDKID---PEKLSVNSHFMKDLGLDSLDQVEIIMAMEDEF 63 (99)
T ss_dssp CCCCCCCHHHHHHHHHHHHHHCTTSC---TTTCCTTCCCCCCCCCCHHHHHHHHHHHHHHT
T ss_pred cCCCCCCHHHHHHHHHHHHHHHhCCC---HhhCCCCCchhhhcCCCHHHHHHHHHHHHHHH
Confidence 34567999999999999997653222 24677888875557899999999999997776
No 29
>2cnr_A FAS, ACP, acyl carrier protein; polykdetide, phosphopantetheine, lipid transport; NMR {Streptomyces coelicolor} PDB: 2koo_A* 2kop_A* 2koq_A* 2kor_A* 2kos_A*
Probab=40.83 E-value=41 Score=24.20 Aligned_cols=54 Identities=15% Similarity=0.128 Sum_probs=42.7
Q ss_pred CCCHHHHHHHHHHHHHHcCCCCCCCCCccccChhhhhhhhcCccChHHHHHHHHhcc
Q 018463 191 AMPRTEIVKQLWAYIRKNNLQDPSNKRKIICDDALRVVFETDCTDMFKMNKLLAKHI 247 (355)
Q Consensus 191 ~~sR~evvk~LW~YIK~nnLQDp~nkr~I~cDdkLk~lF~~d~i~~~~m~klL~~Hl 247 (355)
.|+|.++...|.++|.+.-=.+ ...|..|..|..-+|.|++.+.++...|..+|
T Consensus 2 ~m~~~~i~~~l~~~i~~~l~~~---~~~i~~~~~l~~dlG~DSl~~~~l~~~le~~f 55 (82)
T 2cnr_A 2 AATQEEIVAGLAEIVNEIAGIP---VEDVKLDKSFTDDLDVDSLSMVEVVVAAEERF 55 (82)
T ss_dssp CCCHHHHHHHHHHHHHHHSCCC---TTTCCTTSBTTTTSCCCHHHHHHHHHHHHGGG
T ss_pred CCCHHHHHHHHHHHHHHHhCCC---HHHCCCCcchhhccCCChHHHHHHHHHHHHHh
Confidence 3889999999999887653222 23678888886668899999999999998877
No 30
>1dv5_A APO-DCP, APO-D-alanyl carrier protein; 3-helix bundle, transport protein; NMR {Lactobacillus casei} SCOP: a.28.1.3 PDB: 1hqb_A
Probab=39.36 E-value=16 Score=27.04 Aligned_cols=52 Identities=13% Similarity=0.001 Sum_probs=40.1
Q ss_pred CHHHHHHHHHHHHHHcCCCCCCCCCcccCchhHHhhhccCccchhhHHHHHHhcc
Q 018463 296 LQAEATKRVWEYIKVNHLEDPLNSMVILCDAKLRELLGCESISALGIQEMLARNH 350 (355)
Q Consensus 296 sR~evvk~lW~YIK~n~LqDp~nkr~I~CDekLk~Lfg~~~i~~~~~~klL~~H~ 350 (355)
++.++...|.+||.+.--.++ ..|..|..|..+.+-+|+.+.+|.-.|..+|
T Consensus 1 ~~~~i~~~i~~il~~~~~~~~---~~i~~d~~l~~~g~lDSl~~velv~~lE~~f 52 (80)
T 1dv5_A 1 ADEAIKNGVLDILADLTGSDD---VKKNLDLNLFETGLLDSMGTVQLLLELQSQF 52 (80)
T ss_dssp CCHHHHHHHHHHHHHHHTSSS---TTTCSSCCSSTTSSCCSHHHHHHHHHHTTTS
T ss_pred CHHHHHHHHHHHHHHHhCCCc---ccCCCCcchhhccCcChHHHHHHHHHHHHHh
Confidence 456788888899887652222 3478899998876699999999999888877
No 31
>1x3o_A Acyl carrier protein; structural genomics, riken structural genomics/proteomics in RSGI, NPPSFA; 1.50A {Thermus thermophilus}
Probab=37.49 E-value=25 Score=25.22 Aligned_cols=53 Identities=17% Similarity=0.175 Sum_probs=40.7
Q ss_pred CCHHHHHHHHHHHHHHcCCCCCCCCCccccChhhhhhhhcCccChHHHHHHHHhcc
Q 018463 192 MPRTEIVKQLWAYIRKNNLQDPSNKRKIICDDALRVVFETDCTDMFKMNKLLAKHI 247 (355)
Q Consensus 192 ~sR~evvk~LW~YIK~nnLQDp~nkr~I~cDdkLk~lF~~d~i~~~~m~klL~~Hl 247 (355)
|+|.++...|.++|.+.-=.+ ...|..|..|..-+|.|++.+.++...|..+|
T Consensus 1 M~~~~i~~~l~~~i~~~l~~~---~~~i~~~~~l~~~lG~DSl~~~~l~~~le~~f 53 (80)
T 1x3o_A 1 MTEQEIFEKVKAVIADKLQVE---PEKVTLEARFIEDLGADSLDTVELIMGLEDEF 53 (80)
T ss_dssp CCHHHHHHHHHHHHHHHHTCC---GGGCCTTCBTTTTTCCCHHHHHHHHHHHHHHH
T ss_pred CCHHHHHHHHHHHHHHHhCCC---HHHCCCcCcHHhhcCccHHHHHHHHHHHHHHH
Confidence 678888888888886642112 23578888887778999999999999997776
No 32
>2ahq_A Sigma-54, RNA polymerase sigma factor RPON; sigma-54,sigma factors, solution structure, transcription; NMR {Aquifex aeolicus} PDB: 2o8k_A 2o9l_A
Probab=37.39 E-value=38 Score=25.84 Aligned_cols=42 Identities=17% Similarity=0.378 Sum_probs=36.7
Q ss_pred CCHHHHHHHHHHHhhhcCCCCCccHHHHHHHHHHHhCCCCccc
Q 018463 2 VSDQEIAKGVETLLRQSDRNASTSLNGVVKQLEAKLGLDLSHK 44 (355)
Q Consensus 2 ~Sd~el~~~i~~iL~~aDL~t~~T~k~Vr~qLE~~fgvDLs~k 44 (355)
+|.+.|...|++|+..-|....+|=..|...|+++ |++++-|
T Consensus 16 ~S~~~Ik~~Ik~lI~~Ed~~kPlSD~~I~~~L~~~-Gi~IaRR 57 (76)
T 2ahq_A 16 LTQGELMKLIKEIVENEDKRKPYSDQEIANILKEK-GFKVARR 57 (76)
T ss_dssp CCHHHHHHHHHHHGGGCCSSSCCCHHHHHHHHTTT-SSCCCHH
T ss_pred ccHHHHHHHHHHHHHhcCCCCCCCHHHHHHHHHHc-CCCccHH
Confidence 68899999999999999987778888999999877 9998754
No 33
>2dnw_A Acyl carrier protein; ACP, fatty acid biosynthesis, mitochondria, NADH:ubiquinone oxidereductase, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=36.52 E-value=27 Score=26.80 Aligned_cols=55 Identities=15% Similarity=0.167 Sum_probs=41.4
Q ss_pred CccCHHHHHHHHHHHHHHcCCCCCCCCCcccCchhHHhhhccCccchhhHHHHHHhcc
Q 018463 293 REMLQAEATKRVWEYIKVNHLEDPLNSMVILCDAKLRELLGCESISALGIQEMLARNH 350 (355)
Q Consensus 293 ~~~sR~evvk~lW~YIK~n~LqDp~nkr~I~CDekLk~Lfg~~~i~~~~~~klL~~H~ 350 (355)
..|++.+|...|.+.|.+.--.+ ...|..|..|..-+|.+++.+.+|...|..+|
T Consensus 9 ~~m~~~~i~~~l~~~l~~~l~~~---~~~i~~d~~l~~dlG~DSL~~vel~~~le~~f 63 (99)
T 2dnw_A 9 PPLTLEGIQDRVLYVLKLYDKID---PEKLSVNSHFMKDLGLDSLDQVEIIMAMEDEF 63 (99)
T ss_dssp CCCCHHHHHHHHHHHHHHCTTSC---TTTCCTTCCCCCCCCCCHHHHHHHHHHHHHHT
T ss_pred CCCCHHHHHHHHHHHHHHHhCCC---HhhCCCCCchhhhcCCCHHHHHHHHHHHHHHH
Confidence 37999999999999998753222 23577787775447888888888888887765
No 34
>1klp_A ACP, ACPM, meromycolate extension acyl carrier protein; four-helix bundle, ligand transport; NMR {Mycobacterium tuberculosis} SCOP: a.28.1.1
Probab=35.55 E-value=28 Score=27.60 Aligned_cols=54 Identities=17% Similarity=0.070 Sum_probs=42.4
Q ss_pred ccCHHHHHHHHHHHHHHcCCCCCCCCCcccCchhHHhhhccCccchhhHHHHHHhcc
Q 018463 294 EMLQAEATKRVWEYIKVNHLEDPLNSMVILCDAKLRELLGCESISALGIQEMLARNH 350 (355)
Q Consensus 294 ~~sR~evvk~lW~YIK~n~LqDp~nkr~I~CDekLk~Lfg~~~i~~~~~~klL~~H~ 350 (355)
.|++.+|...|.++|.+.-=.+ ...|-.|..|..-+|.||+.+.+|.-.|..+|
T Consensus 2 ~m~~~~i~~~l~~il~~~l~~~---~~~i~~d~~l~~dlG~DSL~~vel~~~lE~~f 55 (115)
T 1klp_A 2 PVTQEEIIAGIAEIIEEVTGIE---PSEITPEKSFVDDLDIDSLSMVEIAVQTEDKY 55 (115)
T ss_dssp CCCHHHHHHHHHHHHHHHTCCC---TTTCCTTCCTTTTTCSHHHHHHHHHHHHHHHT
T ss_pred CCCHHHHHHHHHHHHHHHhCcC---HHhCCCCCchhhccCCCHHHHHHHHHHHHHHH
Confidence 4899999999999998753222 23578888887678999999999988888776
No 35
>2l4b_A Acyl carrier protein; infectious disease, human granulocytic anaplasmosis, ssgcid, structural genomics; NMR {Anaplasma phagocytophilum}
Probab=33.24 E-value=7 Score=29.32 Aligned_cols=56 Identities=16% Similarity=0.179 Sum_probs=42.7
Q ss_pred ccCHHHHHHHHHHHHHHcC-CCCCCCCCcccCchhHHhhhccCccchhhHHHHHHhcc
Q 018463 294 EMLQAEATKRVWEYIKVNH-LEDPLNSMVILCDAKLRELLGCESISALGIQEMLARNH 350 (355)
Q Consensus 294 ~~sR~evvk~lW~YIK~n~-LqDp~nkr~I~CDekLk~Lfg~~~i~~~~~~klL~~H~ 350 (355)
.|+|.+|...|.++|.+.- +.+ .+...|-.|..|..-+|-||+.+.+|.-.|..+|
T Consensus 3 ~m~~~~i~~~v~~~i~~~l~~~~-~~~~~i~~d~~l~~dlglDSl~~vel~~~lE~~f 59 (88)
T 2l4b_A 3 SMVSEEIKAQVMESVIGCLKLND-EQKQILSGTTNLAKDFNLDSLDFVDLIMSLEERF 59 (88)
T ss_dssp SSSCHHHHHHHHHHHHHHHTCCH-HHHHSCCTTSCTTTTTTCCHHHHHHHHHHHHHHT
T ss_pred CCCHHHHHHHHHHHHHHHHhhCC-CCHhhCCCCCchhhccCCcHHHHHHHHHHHHHHH
Confidence 5899999999999998863 211 0123477888887778999999999988888776
No 36
>2jq4_A AGR_C_4658P, hypothetical protein ATU2571; ATC2521, unknown function, ATC, S genomics, PSI-2, protein structure initiative; NMR {Agrobacterium tumefaciens} SCOP: a.28.1.1
Probab=31.21 E-value=29 Score=27.31 Aligned_cols=56 Identities=13% Similarity=0.046 Sum_probs=38.3
Q ss_pred CccCHHHHHHHHHHHHHHcCCCCCCCCCcccCchhHHhhhccCccchhhHHHHHHhcc
Q 018463 293 REMLQAEATKRVWEYIKVNHLEDPLNSMVILCDAKLRELLGCESISALGIQEMLARNH 350 (355)
Q Consensus 293 ~~~sR~evvk~lW~YIK~n~LqDp~nkr~I~CDekLk~Lfg~~~i~~~~~~klL~~H~ 350 (355)
...++.++...|.++|.+.--.+ .+...|-.|..|.. +|.+|+.+.+|.-.|...|
T Consensus 16 ~~~~~~~i~~~i~~il~~~l~~~-v~~~~i~~d~~l~d-lGlDSL~~veLv~~lE~~f 71 (105)
T 2jq4_A 16 NLYFQGHMNATIREILAKFGQLP-TPVDTIADEADLYA-AGLSSFASVQLMLGIEEAF 71 (105)
T ss_dssp -------CHHHHHHHHHHTSCCS-SCGGGCCTTSCGGG-GTCCHHHHHHHHHHHHHHH
T ss_pred CCCCHHHHHHHHHHHHHHHhccC-CCcccCCCCCCHhh-cCCCHHHHHHHHHHHHHHH
Confidence 36788899999999999863222 23456889999985 8999999999988887766
No 37
>1vku_A Acyl carrier protein; TM0175, structural genomics, JCSG, Pro structure initiative, PSI; 2.00A {Thermotoga maritima} SCOP: a.28.1.1
Probab=30.82 E-value=41 Score=26.33 Aligned_cols=54 Identities=13% Similarity=0.153 Sum_probs=43.7
Q ss_pred CccCHHHHHHHHHHHHHHcCCCCCCCCCcccCchhHHhhhccCccchhhHHHHHHhcc
Q 018463 293 REMLQAEATKRVWEYIKVNHLEDPLNSMVILCDAKLRELLGCESISALGIQEMLARNH 350 (355)
Q Consensus 293 ~~~sR~evvk~lW~YIK~n~LqDp~nkr~I~CDekLk~Lfg~~~i~~~~~~klL~~H~ 350 (355)
.-|-|.++...|+++|.+.--.++ ..|-.|..| .-+|.||+.+.+|.-.|...|
T Consensus 11 ~~~~~~~i~~~l~~ila~~l~v~~---~~I~~d~~L-~dLGlDSL~~veL~~~LE~~f 64 (100)
T 1vku_A 11 HHMERKKLIAKFVEIASEKMGKDL---ETVDEENTF-KELGFDSIDVIDLVMFFEDEF 64 (100)
T ss_dssp CTTHHHHHHHHHHHHHHHTTCCCC---CSCCTTSBT-TTTTCCHHHHHHHHHHHHHHH
T ss_pred hhccHHHHHHHHHHHHHHHHCCCH---HHCCCCCCH-HHcCCchHHHHHHHHHHHHHH
Confidence 368899999999999988642332 358899999 667999999999988887765
No 38
>2ava_A ACP I, acyl carrier protein I, chloroplast; four-helix-bundle, biosynthetic protein; NMR {Spinacia oleracea} PDB: 2fva_A* 2fve_A 2fvf_A* 2xz0_D* 2xz1_C*
Probab=28.96 E-value=49 Score=23.96 Aligned_cols=52 Identities=19% Similarity=0.277 Sum_probs=37.7
Q ss_pred CHHHHHHHHHHHHHHcCCCCCCCCCcccCchhHHhhhccCccchhhHHHHHHhcc
Q 018463 296 LQAEATKRVWEYIKVNHLEDPLNSMVILCDAKLRELLGCESISALGIQEMLARNH 350 (355)
Q Consensus 296 sR~evvk~lW~YIK~n~LqDp~nkr~I~CDekLk~Lfg~~~i~~~~~~klL~~H~ 350 (355)
+|.++...|.+.|.+.--.++. ..|-.|..|. =+|.+|+.+.+|...|..+|
T Consensus 1 ~~~~i~~~l~~i~~~~l~~~~~--~~i~~~~~l~-dlG~DSl~~vel~~~le~~f 52 (82)
T 2ava_A 1 AKKETIDKVSDIVKEKLALGAD--VVVTADSEFS-KLGADSLDTVEIVMNLEEEF 52 (82)
T ss_dssp CCHHHHHHHHHHHHHHTTCSSS--SCCCSSCCSC-CCTTCCSCHHHHHHHHHHHT
T ss_pred ChHHHHHHHHHHHHHHhCCCcc--cccCCCCchh-hcCCCHHHHHHHHHHHHHHH
Confidence 4667777787777775322222 2578888887 46999999999999888876
No 39
>2ava_A ACP I, acyl carrier protein I, chloroplast; four-helix-bundle, biosynthetic protein; NMR {Spinacia oleracea} PDB: 2fva_A* 2fve_A 2fvf_A* 2xz0_D* 2xz1_C*
Probab=28.93 E-value=75 Score=22.87 Aligned_cols=52 Identities=10% Similarity=0.190 Sum_probs=38.8
Q ss_pred CHHHHHHHHHHHHHHcCCCCCCCCCccccChhhhhhhhcCccChHHHHHHHHhcc
Q 018463 193 PRTEIVKQLWAYIRKNNLQDPSNKRKIICDDALRVVFETDCTDMFKMNKLLAKHI 247 (355)
Q Consensus 193 sR~evvk~LW~YIK~nnLQDp~nkr~I~cDdkLk~lF~~d~i~~~~m~klL~~Hl 247 (355)
||.++...|.+.|.+.--.++. ..|..|..|. -+|.|++.+.+|...|..+|
T Consensus 1 ~~~~i~~~l~~i~~~~l~~~~~--~~i~~~~~l~-dlG~DSl~~vel~~~le~~f 52 (82)
T 2ava_A 1 AKKETIDKVSDIVKEKLALGAD--VVVTADSEFS-KLGADSLDTVEIVMNLEEEF 52 (82)
T ss_dssp CCHHHHHHHHHHHHHHTTCSSS--SCCCSSCCSC-CCTTCCSCHHHHHHHHHHHT
T ss_pred ChHHHHHHHHHHHHHHhCCCcc--cccCCCCchh-hcCCCHHHHHHHHHHHHHHH
Confidence 5677878888877664222222 2678888887 57899999999999998877
No 40
>2l4b_A Acyl carrier protein; infectious disease, human granulocytic anaplasmosis, ssgcid, structural genomics; NMR {Anaplasma phagocytophilum}
Probab=26.42 E-value=21 Score=26.64 Aligned_cols=56 Identities=21% Similarity=0.216 Sum_probs=43.3
Q ss_pred CCCHHHHHHHHHHHHHHcC-CCCCCCCCccccChhhhhhhhcCccChHHHHHHHHhcc
Q 018463 191 AMPRTEIVKQLWAYIRKNN-LQDPSNKRKIICDDALRVVFETDCTDMFKMNKLLAKHI 247 (355)
Q Consensus 191 ~~sR~evvk~LW~YIK~nn-LQDp~nkr~I~cDdkLk~lF~~d~i~~~~m~klL~~Hl 247 (355)
.|+|.+|...|.++|.+.- +.+ -+...|..|..|..-+|.|++.+.++.-.|..+|
T Consensus 3 ~m~~~~i~~~v~~~i~~~l~~~~-~~~~~i~~d~~l~~dlglDSl~~vel~~~lE~~f 59 (88)
T 2l4b_A 3 SMVSEEIKAQVMESVIGCLKLND-EQKQILSGTTNLAKDFNLDSLDFVDLIMSLEERF 59 (88)
T ss_dssp SSSCHHHHHHHHHHHHHHHTCCH-HHHHSCCTTSCTTTTTTCCHHHHHHHHHHHHHHT
T ss_pred CCCHHHHHHHHHHHHHHHHhhCC-CCHhhCCCCCchhhccCCcHHHHHHHHHHHHHHH
Confidence 5899999999999998753 211 0123577888887778999999999999997766
No 41
>2icg_A LIN2918 protein; hypothetical protein, structural genomics, PSI- protein structure initiative, joint center for structural G JCSG; 1.65A {Listeria innocua} SCOP: d.369.1.1
Probab=26.17 E-value=99 Score=25.57 Aligned_cols=45 Identities=13% Similarity=0.239 Sum_probs=33.5
Q ss_pred HHHHHHHHHHhhh----cCCCCCccHHHHHHHHHHHhCCCCc-cchhHHHH
Q 018463 5 QEIAKGVETLLRQ----SDRNASTSLNGVVKQLEAKLGLDLS-HKAGFIRD 50 (355)
Q Consensus 5 ~el~~~i~~iL~~----aDL~t~~T~k~Vr~qLE~~fgvDLs-~kK~~I~~ 50 (355)
..+...|++++.. .++...+|. ...+++|..||+.|. +.|.|+..
T Consensus 4 ~~~~~~i~~~i~~~~~~~~~~~~~s~-~~I~~~E~~Lgi~lP~~Yk~fL~~ 53 (160)
T 2icg_A 4 SSFLEEVDRLITLSGITFHASGTGTP-ELIKIYQDALGNEFPETYKLFLEK 53 (160)
T ss_dssp HHHHHHHHHHHHHCCSCCBCCCCCCH-HHHHHHHHHHTCCCCHHHHHHHHH
T ss_pred hHHHHHHHHHHHHcccccccCCCCCH-HHHHHHHHHhCCCCCHHHHHHHHH
Confidence 4677888888853 455555774 667788999999995 77777775
No 42
>2cgq_A Acyl carrier protein ACPA; RV0033, protein transport, phosphopant; 1.83A {Mycobacterium tuberculosis}
Probab=25.81 E-value=34 Score=27.65 Aligned_cols=48 Identities=15% Similarity=0.263 Sum_probs=40.4
Q ss_pred ccCHHHHHHHHHHHHHHcCCCCCCCCCcccCchhHHhhhccCccchhhHHHHHHhcc
Q 018463 294 EMLQAEATKRVWEYIKVNHLEDPLNSMVILCDAKLRELLGCESISALGIQEMLARNH 350 (355)
Q Consensus 294 ~~sR~evvk~lW~YIK~n~LqDp~nkr~I~CDekLk~Lfg~~~i~~~~~~klL~~H~ 350 (355)
.| |.+|...|.++|.+.- . |..|..|..-+|-||+.+.+|.-.|...|
T Consensus 26 ~M-~~ei~~~v~~il~e~l-~-------I~~d~~l~~dLGlDSLd~veLi~~LEe~F 73 (113)
T 2cgq_A 26 AM-EEAINATIQRILRTDR-G-------ITANQVLVDDLGFDSLKLFQLITELEDEF 73 (113)
T ss_dssp CH-HHHHHHHHHHHHTCCS-C-------CCTTCBTTTTTCCCHHHHHHHHHHHHHHH
T ss_pred cc-HHHHHHHHHHHHHHHh-C-------CCCCCchhhhcCCCHHHHHHHHHHHHHHh
Confidence 58 9999999999998753 1 88888888889999999999888887665
No 43
>3ce7_A Specific mitochodrial acyl carrier protein; malaria, mitochondrial, ACP, fatty acid biosynthesis, lipid synthesis, phosphopantetheine; 1.64A {Toxoplasma}
Probab=25.68 E-value=53 Score=25.93 Aligned_cols=52 Identities=8% Similarity=-0.075 Sum_probs=42.2
Q ss_pred cCHHHHHHHHHHHHHHcCCCCCCCCCcccCchhHH-----hhhccCccchhhHHHHHHhcc
Q 018463 295 MLQAEATKRVWEYIKVNHLEDPLNSMVILCDAKLR-----ELLGCESISALGIQEMLARNH 350 (355)
Q Consensus 295 ~sR~evvk~lW~YIK~n~LqDp~nkr~I~CDekLk-----~Lfg~~~i~~~~~~klL~~H~ 350 (355)
+++.+|...|.++|.+.- . +...|..|..|. .=+|-||+.+.+|.-.|..+|
T Consensus 15 ~~~~~i~~~i~~il~e~l-~---~~~~i~~d~~l~~~~~~~dLglDSL~~veli~~lE~~f 71 (107)
T 3ce7_A 15 TDINAVTNYIVGMCQKFL-Q---KGEKVTPSSKLEELRTREDRLWDCLDTVEFVLDVEEIF 71 (107)
T ss_dssp TCHHHHHHHHHHHHHTTB-C---TTCCCCTTSCGGGSBBTTSSBCCHHHHHHHHHHHHHHH
T ss_pred CCHHHHHHHHHHHHHHHh-C---CccccCCCCcccccCcccccCCCHHHHHHHHHHHHHHH
Confidence 789999999999998763 3 234688898887 557999999999988888776
No 44
>1af8_A Actinorhodin polyketide synthase acyl carrier Pro; acyl carrier protein, solution STR antibiotic biosynthesis; NMR {Streptomyces coelicolor} SCOP: a.28.1.1 PDB: 2af8_A 2k0x_A* 2k0y_A 2kg6_A* 2kg8_A* 2kg9_A* 2kga_A* 2kgc_A* 2kgd_A* 2kge_A*
Probab=25.29 E-value=40 Score=24.76 Aligned_cols=50 Identities=14% Similarity=0.070 Sum_probs=32.0
Q ss_pred HHHHHHHHHHHcCCCCCC-CCCcccCchhHHhhhccCccchhhHHHHHHhcc
Q 018463 300 ATKRVWEYIKVNHLEDPL-NSMVILCDAKLRELLGCESISALGIQEMLARNH 350 (355)
Q Consensus 300 vvk~lW~YIK~n~LqDp~-nkr~I~CDekLk~Lfg~~~i~~~~~~klL~~H~ 350 (355)
+...|.++|.+.---++. +-..|-.|..| .=+|.+|+.+.+|.-.|..+|
T Consensus 6 ~~~~l~~il~~~l~~~~~~~~~~i~~~~~l-~dlG~DSL~~vel~~~le~~f 56 (86)
T 1af8_A 6 TTDDLRRALVECAGETDGTDLSGDFLDLRF-EDIGYDSLALMETAARLESRY 56 (86)
T ss_dssp CHHHHHHHHHTTCCCCSCCCTTTCSSTTST-TTTTCCTTTHHHHHHHHTTTT
T ss_pred HHHHHHHHHHHHhCCCcccccccCCCCCCh-hhcCCCHHHHHHHHHHHHHHH
Confidence 344455555543222332 11146788888 457999999999999888776
No 45
>1klp_A ACP, ACPM, meromycolate extension acyl carrier protein; four-helix bundle, ligand transport; NMR {Mycobacterium tuberculosis} SCOP: a.28.1.1
Probab=25.26 E-value=74 Score=25.05 Aligned_cols=54 Identities=11% Similarity=0.140 Sum_probs=42.9
Q ss_pred CCCHHHHHHHHHHHHHHcCCCCCCCCCccccChhhhhhhhcCccChHHHHHHHHhcc
Q 018463 191 AMPRTEIVKQLWAYIRKNNLQDPSNKRKIICDDALRVVFETDCTDMFKMNKLLAKHI 247 (355)
Q Consensus 191 ~~sR~evvk~LW~YIK~nnLQDp~nkr~I~cDdkLk~lF~~d~i~~~~m~klL~~Hl 247 (355)
.|++.+|...|..+|.+.-=.+ ...|..|..|..-+|.|++.+.++.-.|..+|
T Consensus 2 ~m~~~~i~~~l~~il~~~l~~~---~~~i~~d~~l~~dlG~DSL~~vel~~~lE~~f 55 (115)
T 1klp_A 2 PVTQEEIIAGIAEIIEEVTGIE---PSEITPEKSFVDDLDIDSLSMVEIAVQTEDKY 55 (115)
T ss_dssp CCCHHHHHHHHHHHHHHHTCCC---TTTCCTTCCTTTTTCSHHHHHHHHHHHHHHHT
T ss_pred CCCHHHHHHHHHHHHHHHhCcC---HHhCCCCCchhhccCCCHHHHHHHHHHHHHHH
Confidence 4889999999999887653222 24688888887778999999999999998877
No 46
>1dd4_C 50S ribosomal protein L7/L12; dimer formation, flexibility, hinge region, four-helix- bundle, five-helix- bundle, alpha-beta structure; HET: TBR; 2.40A {Thermotoga maritima} SCOP: a.108.1.1
Probab=23.41 E-value=56 Score=21.99 Aligned_cols=19 Identities=37% Similarity=0.583 Sum_probs=15.6
Q ss_pred CccHHHHHHHHHHHhCCCC
Q 018463 23 STSLNGVVKQLEAKLGLDL 41 (355)
Q Consensus 23 ~~T~k~Vr~qLE~~fgvDL 41 (355)
..-.+.+.+.||.+|||+-
T Consensus 15 vlE~~eLvk~leekfGVsa 33 (40)
T 1dd4_C 15 VSELAELVKKLEDKFGVTA 33 (40)
T ss_dssp HHHHHHHHHHHHHHTCCCS
T ss_pred HHHHHHHHHHHHHHHCCCc
Confidence 3456789999999999984
No 47
>3gzm_A Acyl carrier protein; helix bundle, phosphopantetheine, fatty acid biosynthesis, L synthesis, transit peptide, biosynthetic protein; HET: PNS; 1.80A {Plasmodium falciparum} SCOP: a.28.1.0 PDB: 3gzl_A* 2fq0_A* 2fq2_A*
Probab=22.95 E-value=64 Score=23.40 Aligned_cols=52 Identities=12% Similarity=0.112 Sum_probs=39.6
Q ss_pred CHHHHHHHHHHHHHHcCCCCCCCCCcccCchhHHhhhccCccchhhHHHHHHhcc
Q 018463 296 LQAEATKRVWEYIKVNHLEDPLNSMVILCDAKLRELLGCESISALGIQEMLARNH 350 (355)
Q Consensus 296 sR~evvk~lW~YIK~n~LqDp~nkr~I~CDekLk~Lfg~~~i~~~~~~klL~~H~ 350 (355)
+|.+|...|.+.|.+.==.+ ...|-.|..|..-+|.+|+.+.+|.-.|...|
T Consensus 2 ~~~~i~~~l~~ii~~~l~~~---~~~i~~d~~l~~dlg~DSl~~vel~~~le~~f 53 (81)
T 3gzm_A 2 SLKSTFDDIKKIISKQLSVE---EDKIQMNSNFTKDLGADSLDLVELIMALEEKF 53 (81)
T ss_dssp CHHHHHHHHHHHHHHHHTCC---GGGCCTTCBHHHHSCCCHHHHHHHHHHHHHHH
T ss_pred CHHHHHHHHHHHHHHHhCcC---HHHCCCCCcchhhcCCCHHHHHHHHHHHHHHH
Confidence 57788888888887652112 34688999997788999999999988887765
No 48
>1vku_A Acyl carrier protein; TM0175, structural genomics, JCSG, Pro structure initiative, PSI; 2.00A {Thermotoga maritima} SCOP: a.28.1.1
Probab=22.50 E-value=87 Score=24.38 Aligned_cols=54 Identities=9% Similarity=0.179 Sum_probs=44.1
Q ss_pred CCCCHHHHHHHHHHHHHHcCCCCCCCCCccccChhhhhhhhcCccChHHHHHHHHhcc
Q 018463 190 PAMPRTEIVKQLWAYIRKNNLQDPSNKRKIICDDALRVVFETDCTDMFKMNKLLAKHI 247 (355)
Q Consensus 190 ~~~sR~evvk~LW~YIK~nnLQDp~nkr~I~cDdkLk~lF~~d~i~~~~m~klL~~Hl 247 (355)
..|.|.++...|+++|.+.--.++ ..|..|..| .-+|.|++.+.+|.-.|...|
T Consensus 11 ~~~~~~~i~~~l~~ila~~l~v~~---~~I~~d~~L-~dLGlDSL~~veL~~~LE~~f 64 (100)
T 1vku_A 11 HHMERKKLIAKFVEIASEKMGKDL---ETVDEENTF-KELGFDSIDVIDLVMFFEDEF 64 (100)
T ss_dssp CTTHHHHHHHHHHHHHHHTTCCCC---CSCCTTSBT-TTTTCCHHHHHHHHHHHHHHH
T ss_pred hhccHHHHHHHHHHHHHHHHCCCH---HHCCCCCCH-HHcCCchHHHHHHHHHHHHHH
Confidence 468899999999999977542232 468889999 678999999999999997766
No 49
>2qnw_A Acyl carrier protein; malaria, SGC, structural genomics CONS fatty acid biosynthesis, lipid synthesis, phosphopantethein transit peptide; 1.90A {Toxoplasma gondii}
Probab=22.06 E-value=61 Score=23.50 Aligned_cols=53 Identities=11% Similarity=0.061 Sum_probs=40.1
Q ss_pred cCHHHHHHHHHHHHHHcCCCCCCCCCcccCchhHHhhhccCccchhhHHHHHHhcc
Q 018463 295 MLQAEATKRVWEYIKVNHLEDPLNSMVILCDAKLRELLGCESISALGIQEMLARNH 350 (355)
Q Consensus 295 ~sR~evvk~lW~YIK~n~LqDp~nkr~I~CDekLk~Lfg~~~i~~~~~~klL~~H~ 350 (355)
.++.++...|.++|.+.-=.+ ...|-.|..|..-+|.+++.+.+|...|..+|
T Consensus 3 ~~~~~i~~~l~~ii~~~l~~~---~~~i~~d~~l~~dlG~DSl~~vel~~~le~~f 55 (82)
T 2qnw_A 3 SDDRPLLERVKDVVADQLGVD---RARINPESNFIKDLDADSLDSVELVMAFEEKF 55 (82)
T ss_dssp CCSHHHHHHHHHHHHHHHCCC---GGGCCTTCBHHHHSCCCHHHHHHHHHHHHHHH
T ss_pred CcHHHHHHHHHHHHHHHHCCC---HhhCCCccchhhccCCcHHHHHHHHHHHHHHH
Confidence 467778888888877642112 34688899997778999999999988888766
No 50
>1dv5_A APO-DCP, APO-D-alanyl carrier protein; 3-helix bundle, transport protein; NMR {Lactobacillus casei} SCOP: a.28.1.3 PDB: 1hqb_A
Probab=21.40 E-value=70 Score=23.38 Aligned_cols=52 Identities=13% Similarity=-0.033 Sum_probs=39.9
Q ss_pred CHHHHHHHHHHHHHHcCCCCCCCCCccccChhhhhhhhcCccChHHHHHHHHhcc
Q 018463 193 PRTEIVKQLWAYIRKNNLQDPSNKRKIICDDALRVVFETDCTDMFKMNKLLAKHI 247 (355)
Q Consensus 193 sR~evvk~LW~YIK~nnLQDp~nkr~I~cDdkLk~lF~~d~i~~~~m~klL~~Hl 247 (355)
+|.+|...|-+||.+.--.+ ...|..|..|...-+.|++.+.+|--.|..+|
T Consensus 1 ~~~~i~~~i~~il~~~~~~~---~~~i~~d~~l~~~g~lDSl~~velv~~lE~~f 52 (80)
T 1dv5_A 1 ADEAIKNGVLDILADLTGSD---DVKKNLDLNLFETGLLDSMGTVQLLLELQSQF 52 (80)
T ss_dssp CCHHHHHHHHHHHHHHHTSS---STTTCSSCCSSTTSSCCSHHHHHHHHHHTTTS
T ss_pred CHHHHHHHHHHHHHHHhCCC---cccCCCCcchhhccCcChHHHHHHHHHHHHHh
Confidence 35678888889988765222 23478888887775589999999999997776
No 51
>2juo_A GA-binding protein alpha chain; OST, ubiquitin, transcription factor, ensemble, DNA-binding, nucleus, transcription regulation; NMR {Mus musculus}
Probab=21.11 E-value=24 Score=27.85 Aligned_cols=33 Identities=24% Similarity=0.324 Sum_probs=24.5
Q ss_pred hhcCCCCCccHHHHHHHHHHHhCCCCccchhHHHH
Q 018463 16 RQSDRNASTSLNGVVKQLEAKLGLDLSHKAGFIRD 50 (355)
Q Consensus 16 ~~aDL~t~~T~k~Vr~qLE~~fgvDLs~kK~~I~~ 50 (355)
..-|... ....+|.-||.++|+||+...-+..+
T Consensus 7 qhmDI~e--pL~~Lk~LLe~Rl~i~L~~y~f~LQd 39 (89)
T 2juo_A 7 QAIDINE--PIGNLKKLLEPRLQCSLDAHEICLQD 39 (89)
T ss_dssp EEEESSS--BGGGHHHHSHHHHCSCCSSCEEEETT
T ss_pred hhccccC--cHHHHHHHHHHHhcCCcccCeEEeec
Confidence 3456654 55689999999999999988654433
No 52
>2ns0_A Hypothetical protein; rhodococcus structural genomics, PSI-2, protein structure in midwest center for structural genomics, MCSG; 2.00A {Rhodococcus SP} SCOP: a.4.5.76
Probab=20.40 E-value=1.3e+02 Score=23.45 Aligned_cols=53 Identities=23% Similarity=0.249 Sum_probs=41.5
Q ss_pred CCCHHHHHHHHHHHhhhcCCCCCccHHHHHHHHHHHhCCCCccchhHHHHHHHHHh
Q 018463 1 MVSDQEIAKGVETLLRQSDRNASTSLNGVVKQLEAKLGLDLSHKAGFIRDQISLLL 56 (355)
Q Consensus 1 m~Sd~el~~~i~~iL~~aDL~t~~T~k~Vr~qLE~~fgvDLs~kK~~I~~~i~~~l 56 (355)
+++|..|...|.++|.......|+.-+.|-+.|. +-+=-.--.-||.....+-
T Consensus 2 ~~~~~~le~~Il~ll~~R~~~kTicPSEvARal~---~~~Wr~lM~~vR~~A~~La 54 (85)
T 2ns0_A 2 TVSDRELEECIRALLDARADSASICPSDVARAVA---PDDWRPLMEPVREAAGRLA 54 (85)
T ss_dssp CSCHHHHHHHHHHHHHHSCTTCCBCHHHHHHHHC---TTSCGGGHHHHHHHHHHHH
T ss_pred CCchHHHHHHHHHHHHHhCCCCCcCHHHHHHHhC---chhHHHHhHHHHHHHHHHH
Confidence 4789999999999999999987799899988883 4455555566777755554
No 53
>3ejb_A Acyl carrier protein; protein-protein complex, cytochrome P450 fold, carrier protein, 4-helix bundle, cytoplasm; HET: ZMP HTG HEM; 2.00A {Escherichia coli} SCOP: a.28.1.1 PDB: 3ejd_A* 3eje_A*
Probab=20.32 E-value=54 Score=25.22 Aligned_cols=54 Identities=17% Similarity=0.147 Sum_probs=42.0
Q ss_pred ccCHHHHHHHHHHHHHHcCCCCCCCCCcccCchhHHhhhccCccchhhHHHHHHhcc
Q 018463 294 EMLQAEATKRVWEYIKVNHLEDPLNSMVILCDAKLRELLGCESISALGIQEMLARNH 350 (355)
Q Consensus 294 ~~sR~evvk~lW~YIK~n~LqDp~nkr~I~CDekLk~Lfg~~~i~~~~~~klL~~H~ 350 (355)
.+++.+|...|.+.|.+.- .- +...|-.|..|..-+|.|++.+.+|.-.|...|
T Consensus 17 ~~t~~~i~~~l~~iia~~l-~~--~~~~i~~d~~l~~dLGlDSL~~vel~~~lE~~f 70 (97)
T 3ejb_A 17 GSHMSTIEERVKKIIGEQL-GV--KQEEVTNNASFVEDLGADSLDTVELVMALEEEF 70 (97)
T ss_dssp -CCCCCHHHHHHHHHHHHS-CC--CTTTSCTTCBTTTTTCCCTTHHHHHHHHHHHHT
T ss_pred CCCHHHHHHHHHHHHHHHH-Cc--CHHHCCCCCCchhhcCCCHHHHHHHHHHHHHHH
Confidence 6888899999999998753 22 233688898887778999999999988887765
Done!