BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 018466
(355 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|2BRT|A Chain A, Anthocyanidin Synthase From Arabidopsis Thaliana Complexed
With Naringenin
Length = 355
Score = 212 bits (540), Expect = 2e-55, Method: Compositional matrix adjust.
Identities = 118/342 (34%), Positives = 191/342 (55%), Gaps = 20/342 (5%)
Query: 6 RVQNLVQSGVSQVPRQYIQPLESRP--NNHSHDQNNNHTPQSSNINIPLIDLSN--PNDT 61
RV++L +SG+ +P++YI+P E N+ ++ PQ +P IDL N +D
Sbjct: 5 RVESLAKSGIISIPKEYIRPKEELESINDVFLEEKKEDGPQ-----VPTIDLKNIESDDE 59
Query: 62 IL----LDSIRHACREWGAFHVINHGVPLKLLHDVRHVGRSFFEGCPLTDKLEYACDNAS 117
+ ++ ++ A +WG H+INHG+P L+ V+ G FF + +K +YA D A+
Sbjct: 60 KIRENCIEELKKASLDWGVMHLINHGIPADLMERVKKAGEEFF-SLSVEEKEKYANDQAT 118
Query: 118 AASEGYGSKLLVANDDTVLDWRDYFDHHTLPLSRRNPSRWPSKLIPNYGKVLCDYSDEMK 177
+GYGSKL N L+W DYF H P +R+ S WP K +Y + +Y+ ++
Sbjct: 119 GKIQGYGSKL-ANNASGQLEWEDYFFHLAYPEEKRDLSIWP-KTPSDYIEATSEYAKCLR 176
Query: 178 LLCEKLLGFISESLGLTSSYMKDAVG---ELYQNITISYYPPCPQPELTLGLQPHSDFGA 234
LL K+ +S LGL ++ VG EL + I+YYP CPQPEL LG++ H+D A
Sbjct: 177 LLATKVFKALSVGLGLEPDRLEKEVGGLEELLLQMKINYYPKCPQPELALGVEAHTDVSA 236
Query: 235 LTLLIQDDVEGLQVLKDGHWVTVQPLSEAIVVILSDQTQILTNGEYISAIHRAITNASRA 294
LT ++ + V GLQ+ +G WVT + + ++IV+ + D +IL+NG+Y S +HR + N +
Sbjct: 237 LTFILHNMVPGLQLFYEGKWVTAKCVPDSIVMHIGDTLEILSNGKYKSILHRGLVNKEKV 296
Query: 295 RLSVATFHDPAK-TVKISPASELVSKSSLLRYRQVVYGDYVS 335
R+S A F +P K + + P E+VS S ++ + ++
Sbjct: 297 RISWAVFCEPPKDKIVLKPLPEMVSVESPAKFPPRTFAQHIE 338
>pdb|1GP5|A Chain A, Anthocyanidin Synthase From Arabidopsis Thaliana Complexed
With Trans-Dihydroquercetin
pdb|1GP6|A Chain A, Anthocyanidin Synthase From Arabidopsis Thaliana Complexed
With Trans-Dihydroquercetin (With 30 Min Exposure To O2)
Length = 356
Score = 212 bits (539), Expect = 3e-55, Method: Compositional matrix adjust.
Identities = 119/347 (34%), Positives = 193/347 (55%), Gaps = 20/347 (5%)
Query: 1 MEPLVRVQNLVQSGVSQVPRQYIQPLESRP--NNHSHDQNNNHTPQSSNINIPLIDLSN- 57
M + RV++L +SG+ +P++YI+P E N+ ++ PQ +P IDL N
Sbjct: 1 MVAVERVESLAKSGIISIPKEYIRPKEELESINDVFLEEKKEDGPQ-----VPTIDLKNI 55
Query: 58 -PNDTIL----LDSIRHACREWGAFHVINHGVPLKLLHDVRHVGRSFFEGCPLTDKLEYA 112
+D + ++ ++ A +WG H+INHG+P L+ V+ G FF + +K +YA
Sbjct: 56 ESDDEKIRENCIEELKKASLDWGVMHLINHGIPADLMERVKKAGEEFF-SLSVEEKEKYA 114
Query: 113 CDNASAASEGYGSKLLVANDDTVLDWRDYFDHHTLPLSRRNPSRWPSKLIPNYGKVLCDY 172
D A+ +GYGSKL N L+W DYF H P +R+ S WP K +Y + +Y
Sbjct: 115 NDQATGKIQGYGSKL-ANNASGQLEWEDYFFHLAYPEEKRDLSIWP-KTPSDYIEATSEY 172
Query: 173 SDEMKLLCEKLLGFISESLGLTSSYMKDAVG---ELYQNITISYYPPCPQPELTLGLQPH 229
+ ++LL K+ +S LGL ++ VG EL + I+YYP CPQPEL LG++ H
Sbjct: 173 AKCLRLLATKVFKALSVGLGLEPDRLEKEVGGLEELLLQMKINYYPKCPQPELALGVEAH 232
Query: 230 SDFGALTLLIQDDVEGLQVLKDGHWVTVQPLSEAIVVILSDQTQILTNGEYISAIHRAIT 289
+D ALT ++ + V GLQ+ +G WVT + + ++IV+ + D +IL+NG+Y S +HR +
Sbjct: 233 TDVSALTFILHNMVPGLQLFYEGKWVTAKCVPDSIVMHIGDTLEILSNGKYKSILHRGLV 292
Query: 290 NASRARLSVATFHDPAK-TVKISPASELVSKSSLLRYRQVVYGDYVS 335
N + R+S A F +P K + + P E+VS S ++ + ++
Sbjct: 293 NKEKVRISWAVFCEPPKDKIVLKPLPEMVSVESPAKFPPRTFAQHIE 339
>pdb|1GP4|A Chain A, Anthocyanidin Synthase From Arabidopsis Thaliana
(Selenomethionine Substituted)
Length = 356
Score = 207 bits (526), Expect = 8e-54, Method: Compositional matrix adjust.
Identities = 118/342 (34%), Positives = 187/342 (54%), Gaps = 20/342 (5%)
Query: 6 RVQNLVQSGVSQVPRQYIQPLESRP--NNHSHDQNNNHTPQSSNINIPLIDLSN--PNDT 61
RV++L +SG+ +P++YI+P E N+ ++ PQ +P IDL N +D
Sbjct: 6 RVESLAKSGIISIPKEYIRPKEELESINDVFLEEKKEDGPQ-----VPTIDLKNIESDDE 60
Query: 62 IL----LDSIRHACREWGAFHVINHGVPLKLLHDVRHVGRSFFEGCPLTDKLEYACDNAS 117
+ ++ ++ A +WG H+INHG+P L V+ G FF + +K +YA D A+
Sbjct: 61 KIRENCIEELKKASLDWGVXHLINHGIPADLXERVKKAGEEFF-SLSVEEKEKYANDQAT 119
Query: 118 AASEGYGSKLLVANDDTVLDWRDYFDHHTLPLSRRNPSRWPSKLIPNYGKVLCDYSDEMK 177
+GYGSKL N L+W DYF H P +R+ S WP K +Y + +Y+ ++
Sbjct: 120 GKIQGYGSKL-ANNASGQLEWEDYFFHLAYPEEKRDLSIWP-KTPSDYIEATSEYAKCLR 177
Query: 178 LLCEKLLGFISESLGLTSSYMKDAVG---ELYQNITISYYPPCPQPELTLGLQPHSDFGA 234
LL K+ +S LGL ++ VG EL I+YYP CPQPEL LG++ H+D A
Sbjct: 178 LLATKVFKALSVGLGLEPDRLEKEVGGLEELLLQXKINYYPKCPQPELALGVEAHTDVSA 237
Query: 235 LTLLIQDDVEGLQVLKDGHWVTVQPLSEAIVVILSDQTQILTNGEYISAIHRAITNASRA 294
LT ++ + V GLQ+ +G WVT + + ++IV + D +IL+NG+Y S +HR + N +
Sbjct: 238 LTFILHNXVPGLQLFYEGKWVTAKCVPDSIVXHIGDTLEILSNGKYKSILHRGLVNKEKV 297
Query: 295 RLSVATFHDPAK-TVKISPASELVSKSSLLRYRQVVYGDYVS 335
R+S A F +P K + + P E VS S ++ + ++
Sbjct: 298 RISWAVFCEPPKDKIVLKPLPEXVSVESPAKFPPRTFAQHIE 339
>pdb|1W9Y|A Chain A, The Structure Of Acc Oxidase
pdb|1WA6|X Chain X, The Structure Of Acc Oxidase
Length = 319
Score = 173 bits (439), Expect = 1e-43, Method: Compositional matrix adjust.
Identities = 109/295 (36%), Positives = 154/295 (52%), Gaps = 22/295 (7%)
Query: 49 NIPLIDLSNPND---TILLDSIRHACREWGAFHVINHGVPLKLLHDVRHVGRSFFEGCPL 105
N P+I L N + I+ AC WG F ++NHG+P ++ V + ++ C
Sbjct: 3 NFPIISLDKVNGVERAATXEXIKDACENWGFFELVNHGIPREVXDTVEKXTKGHYKKCXE 62
Query: 106 TDKLEYACDNASAASEGYGSKLLVANDDTVLDWRDYFDHHTLPLSRRNPSRWPSKLIPNY 165
E AS A EG +++ T DW F LP+S N S P L Y
Sbjct: 63 QRFKELV---ASKALEGVQAEV------TDXDWESTFFLKHLPIS--NISEVPD-LDEEY 110
Query: 166 GKVLCDYSDEMKLLCEKLLGFISESLGLTSSYMKDAV-GELYQNI--TISYYPPCPQPEL 222
+V D++ ++ L E+LL + E+LGL Y+K+A G N +S YPPCP+P+L
Sbjct: 111 REVXRDFAKRLEKLAEELLDLLCENLGLEKGYLKNAFYGSKGPNFGTKVSNYPPCPKPDL 170
Query: 223 TLGLQPHSDFGALTLLIQDD-VEGLQVLKDGHWVTVQPLSEAIVVILSDQTQILTNGEYI 281
GL+ H+D G + LL QDD V GLQ+LKDG W+ V P +IVV L DQ +++TNG+Y
Sbjct: 171 IKGLRAHTDAGGIILLFQDDKVSGLQLLKDGQWIDVPPXRHSIVVNLGDQLEVITNGKYK 230
Query: 282 SAIHRAITNASRARLSVATFHDPAKTVKISPASELVSKSSLLR---YRQVVYGDY 333
S HR I AR S+A+F++P I PA LV K + Y + V+ DY
Sbjct: 231 SVXHRVIAQKDGARXSLASFYNPGSDAVIYPAPALVEKEAEENKQVYPKFVFDDY 285
>pdb|3OOX|A Chain A, Crystal Structure Of A Putative 2og-Fe(Ii) Oxygenase
Family Protein (Cc_0200) From Caulobacter Crescentus At
1.44 A Resolution
pdb|3OOX|B Chain B, Crystal Structure Of A Putative 2og-Fe(Ii) Oxygenase
Family Protein (Cc_0200) From Caulobacter Crescentus At
1.44 A Resolution
Length = 312
Score = 59.7 bits (143), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 46/182 (25%), Positives = 80/182 (43%), Gaps = 8/182 (4%)
Query: 157 WPSKLIPNYGKVLCDYSDEMKLLCEKLLGFISESLGLTSSYMKDAVGELYQNITISYYPP 216
WP++ IP + + + + K+L I+ L L + K V + + + +YPP
Sbjct: 120 WPAE-IPAFKHDVSWLYNSLDGXGGKVLEAIATYLKLERDFFKPTVQDGNSVLRLLHYPP 178
Query: 217 CPQPELTLGLQPHSDFGALTLLIQDDVEGLQVL-KDGHWVTVQPLSEAIVVILSDQTQIL 275
P+ + H D +TLL+ + GL+VL +DG W+ + P +V+ + D + L
Sbjct: 179 IPKDATGVRAGAHGDINTITLLLGAEEGGLEVLDRDGQWLPINPPPGCLVINIGDXLERL 238
Query: 276 TNGEYISAIHRAITNASRARLSVATFHDP-----AKTVKISPASELVSKSSLLRYRQVVY 330
TN S +HR + N R V + P A +I V+ + RY + +
Sbjct: 239 TNNVLPSTVHR-VVNPPPERRGVPRYSTPFFLHFASDYEIKTLQNCVTAENPDRYPESIT 297
Query: 331 GD 332
D
Sbjct: 298 AD 299
>pdb|3ON7|A Chain A, Crystal Structure Of A Putative Oxygenase (So_2589) From
Shewanella Oneidensis At 2.20 A Resolution
pdb|3ON7|B Chain B, Crystal Structure Of A Putative Oxygenase (So_2589) From
Shewanella Oneidensis At 2.20 A Resolution
pdb|3ON7|C Chain C, Crystal Structure Of A Putative Oxygenase (So_2589) From
Shewanella Oneidensis At 2.20 A Resolution
pdb|3ON7|D Chain D, Crystal Structure Of A Putative Oxygenase (So_2589) From
Shewanella Oneidensis At 2.20 A Resolution
Length = 280
Score = 47.0 bits (110), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 62/255 (24%), Positives = 108/255 (42%), Gaps = 27/255 (10%)
Query: 70 ACREWGAFHVINHGVPLKLLHDVRHVGRSFFEGCPLTDKLEYACDNASAASEGYGSKLLV 129
+ RE G + NH + +L+ + ++FF K E+ + + S
Sbjct: 21 SLRETGFGVLSNHPIDKELVERIYTEWQAFFNS---EAKNEFXFNRETHDGFFPASISET 77
Query: 130 ANDDTVLDWRDYFDHHTLPLSRRNPSRWPSKLIPNYGKVLCDYSDEMKLLCEKLLGFIS- 188
A TV D ++Y+ H P R P L N + Y ++ L +LL +I
Sbjct: 78 AKGHTVKDIKEYY--HVYPWGR-----IPDSLRAN----ILAYYEKANTLASELLEWIET 126
Query: 189 ----ESLGLTSSYMKDAVGELYQNI-TISYYPPCPQPELTLGLQP--HSDFGALTLLIQD 241
E S + + + ++ + I +YPP E ++ H D +T+L
Sbjct: 127 YSPDEIKAKFSIPLPEXIANSHKTLLRILHYPPXTGDEEXGAIRAAAHEDINLITVLPTA 186
Query: 242 DVEGLQV-LKDGHWVTVQPLSEAIVVILSDQTQILTNGEYISAIHRAI----TNASRARL 296
+ GLQV KDG W+ V I++ + D Q ++G + S HR I T+ +++R+
Sbjct: 187 NEPGLQVKAKDGSWLDVPSDFGNIIINIGDXLQEASDGYFPSTSHRVINPEGTDKTKSRI 246
Query: 297 SVATFHDPAKTVKIS 311
S+ F P +V +S
Sbjct: 247 SLPLFLHPHPSVVLS 261
>pdb|1IPS|A Chain A, Isopenicillin N Synthase From Aspergillus Nidulans
(Manganese Complex)
pdb|1IPS|B Chain B, Isopenicillin N Synthase From Aspergillus Nidulans
(Manganese Complex)
pdb|1QJE|A Chain A, Isopenicillin N Synthase From Aspergillus Nidulans (Ip1 -
Fe Complex)
pdb|1QJF|A Chain A, Isopenicillin N Synthase From Aspergillus Nidulans
(Monocyclic Sulfoxide - Fe Complex)
pdb|1QIQ|A Chain A, Isopenicillin N Synthase From Aspergillus Nidulans (Acmc
Fe Complex)
pdb|1HB4|A Chain A, Isopenicillin N Synthase From Aspergillus Nidulans (Oxygen
Exposed Product From Anaerobic Acov Fe Complex)
pdb|1HB3|A Chain A, Isopenicillin N Synthase From Aspergillus Nidulans (Oxygen
Exposed Product From Anaerobic Acov Fe Complex)
pdb|1HB2|A Chain A, Isopenicillin N Synthase From Aspergillus Nidulans (Oxygen
Exposed Product From Anaerobic Acov Fe Complex)
pdb|1HB1|A Chain A, Isopenicillin N Synthase From Aspergillus Nidulans
(Anaerobic Acov Fe Complex)
pdb|1ODM|A Chain A, Isopenicillin N Synthase From Aspergillus Nidulans
(anaerobic Ac-vinylglycine Fe Complex)
pdb|1ODN|A Chain A, Isopenicillin N Synthase From Aspergillus Nidulans
(Oxygen-Exposed Product From Anaerobic Ac-Vinylglycine
Fe Complex)
pdb|1OBN|A Chain A, Isopenicillin N Synthase
Aminoadipoyl-cysteinyl-aminobutyrate-fe-no Complex
pdb|1OC1|A Chain A, Isopenicillin N Synthase
Aminoadipoyl-cysteinyl-aminobutyrate-fe Complex
pdb|1UZW|A Chain A, Isopenicillin N Synthase With
L-D-(A-Aminoadipoyl)-L-Cysteinyl-D-Isodehydrovaline
pdb|1W03|A Chain A, Isopenicillin N Synthase Aminoadipoyl-Cysteinyl-Glycine-Fe
Complex
pdb|1W04|A Chain A, Isopenicillin N Synthase
Aminoadipoyl-Cysteinyl-Glycine-Fe-No Complex
pdb|1W05|A Chain A, Isopenicillin N Synthase Aminoadipoyl-Cysteinyl-Alanine-Fe
Complex
pdb|1W06|A Chain A, Isopenicillin N Synthase Aminoadipoyl-Cysteinyl-Alanine-Fe
No Complex
pdb|2BU9|A Chain A, Isopenicillin N Synthase Complexed With L-Aminoadipoyl-L-
Cysteinyl-L-Hexafluorovaline
pdb|1W3V|A Chain A, Isopenicillin N Synthase
D-(L-A-Aminoadipoyl)-(3r)-Methyl-L- Cysteine
D-A-Hydroxyisovaleryl Ester Complex (Anaerobic)
pdb|1W3X|A Chain A, Isopenicillin N Synthase
D-(L-A-Aminoadipoyl)-(3r)-Methyl-L- Cysteine
D-A-Hydroxyisovaleryl Ester Complex (Oxygen Exposed 5
Minutes 20 Bar)
pdb|2IVI|B Chain B, Isopenicillin N Synthase From Aspergillus Nidulans
(anaerobic Ac-methyl-cyclopropylglycine Fe Complex)
pdb|2IVJ|A Chain A, Isopenicillin N Synthase From Aspergillus Nidulans
(Anaerobic Ac-Cyclopropylglycine Fe Complex)
pdb|1BK0|A Chain A, Isopenicillin N Synthase From Aspergillus Nidulans (Acv-Fe
Complex)
pdb|1BLZ|A Chain A, Isopenicillin N Synthase From Aspergillus Nidulans
(Acv-Fe- No Complex)
pdb|2JB4|A Chain A, Isopenicillin N Synthase With A 2-Thiabicycloheptan-6-One
Product Analogue
pdb|2VAU|A Chain A, Isopenicillin N Synthase With Substrate Analogue Acomp (
Unexposed)
pdb|2VBB|A Chain A, Isopenicillin N Synthase With Substrate Analogue Acomp (
35minutes Oxygen Exposure)
pdb|2VBD|A Chain A, Isopenicillin N Synthase With Substrate Analogue L,l,l-
Acomp (unexposed)
pdb|2VBP|A Chain A, Isopenicillin N Synthase With Substrate Analogue
L,L,L-Acab (Unexposed)
pdb|2VCM|A Chain A, Isopenicillin N Synthase With Substrate Analogue Asmcov
pdb|2VE1|A Chain A, Isopenicillin N Synthase With Substrate Analogue Asmcov (
Oxygen Exposed 1min 20bar)
pdb|2WO7|A Chain A, Isopenicillin N Synthase With Substrate Analogue L,L,D-
Acd2ab (Unexposed)
pdb|2Y6F|A Chain A, Isopenicillin N Synthase With
Ac-D-S-Methyl-3r-Methylcysteine
pdb|2Y60|A Chain A, Isopenicillin N Synthase With Ac-D-Methionine
pdb|2Y86|A Chain A, Isopenicillin N Synthase With Ac-O-Methyl-D-Threonine
pdb|3ZKU|A Chain A, Isopenicillin N Synthase With Substrate Analogue Ahcv
Length = 331
Score = 33.9 bits (76), Expect = 0.16, Method: Compositional matrix adjust.
Identities = 57/281 (20%), Positives = 102/281 (36%), Gaps = 33/281 (11%)
Query: 46 SNINIPLIDLS------NPNDTILLDSIRHACREWGAFHVINHGVPLKLLHDVRHVGRSF 99
S N+P ID+S + I A R+ G F+ +NHG+ ++ L + F
Sbjct: 5 SKANVPKIDVSPLFGDDQAAKMRVAQQIDAASRDTGFFYAVNHGINVQRL---SQKTKEF 61
Query: 100 FEGCPLTDKLEYACD--NASAASEGYGSKLLVANDDTVLDWRDYFDHHTLP----LSRRN 153
+K + A N + L ++ Y + + P + +
Sbjct: 62 HMSITPEEKWDLAIRAYNKEHQDQVRAGYYLSIPGKKAVESFCYLNPNFTPDHPRIQAKT 121
Query: 154 PSR----WPSKLI-PNYGKVLCDYSDEMKLLCEKLLGFISESLGLTSSYMKDAVG--ELY 206
P+ WP + P + Y ++ L LL + +LG ++ +
Sbjct: 122 PTHEVNVWPDETKHPGFQDFAEQYYWDVFGLSSALLKGYALALGKEENFFARHFKPDDTL 181
Query: 207 QNITISYYP---PCPQPELT-------LGLQPHSDFGALTLLIQDDVEGLQVLKDGHWVT 256
++ + YP P P+ + L + H D +T+L Q +V+ LQV +
Sbjct: 182 ASVVLIRYPYLDPYPEAAIKTAADGTKLSFEWHEDVSLITVLYQSNVQNLQVETAAGYQD 241
Query: 257 VQPLSEAIVVILSDQTQILTNGEYISAIHRA-ITNASRARL 296
++ ++ LTN Y + IHR NA R L
Sbjct: 242 IEADDTGYLINCGSYMAHLTNNYYKAPIHRVKWVNAERQSL 282
>pdb|2BJS|A Chain A, Isopenicillin N Synthase C-Terminal Truncation Mutant
Length = 325
Score = 33.5 bits (75), Expect = 0.18, Method: Compositional matrix adjust.
Identities = 57/281 (20%), Positives = 102/281 (36%), Gaps = 33/281 (11%)
Query: 46 SNINIPLIDLS------NPNDTILLDSIRHACREWGAFHVINHGVPLKLLHDVRHVGRSF 99
S N+P ID+S + I A R+ G F+ +NHG+ ++ L + F
Sbjct: 5 SKANVPKIDVSPLFGDDQAAKMRVAQQIDAASRDTGFFYAVNHGINVQRL---SQKTKEF 61
Query: 100 FEGCPLTDKLEYACD--NASAASEGYGSKLLVANDDTVLDWRDYFDHHTLP----LSRRN 153
+K + A N + L ++ Y + + P + +
Sbjct: 62 HMSITPEEKWDLAIRAYNKEHQDQVRAGYYLSIPGKKAVESFCYLNPNFTPDHPRIQAKT 121
Query: 154 PSR----WPSKLI-PNYGKVLCDYSDEMKLLCEKLLGFISESLGLTSSYMKDAVG--ELY 206
P+ WP + P + Y ++ L LL + +LG ++ +
Sbjct: 122 PTHEVNVWPDETKHPGFQDFAEQYYWDVFGLSSALLKGYALALGKEENFFARHFKPDDTL 181
Query: 207 QNITISYYP---PCPQPELT-------LGLQPHSDFGALTLLIQDDVEGLQVLKDGHWVT 256
++ + YP P P+ + L + H D +T+L Q +V+ LQV +
Sbjct: 182 ASVVLIRYPYLDPYPEAAIKTAADGTKLSFEWHEDVSLITVLYQSNVQNLQVETAAGYQD 241
Query: 257 VQPLSEAIVVILSDQTQILTNGEYISAIHRA-ITNASRARL 296
++ ++ LTN Y + IHR NA R L
Sbjct: 242 IEADDTGYLINCGSYMAHLTNNYYKAPIHRVKWVNAERQSL 282
>pdb|2FKN|A Chain A, Crystal Structure Of Urocanase From Bacillus Subtilis
pdb|2FKN|B Chain B, Crystal Structure Of Urocanase From Bacillus Subtilis
pdb|2FKN|C Chain C, Crystal Structure Of Urocanase From Bacillus Subtilis
pdb|2FKN|D Chain D, Crystal Structure Of Urocanase From Bacillus Subtilis
Length = 552
Score = 31.6 bits (70), Expect = 0.65, Method: Compositional matrix adjust.
Identities = 12/26 (46%), Positives = 14/26 (53%)
Query: 57 NPNDTILLDSIRHACREWGAFHVINH 82
P D I+ I A R+W AFH I H
Sbjct: 41 KPEDLIVYGGIGKAARDWDAFHAIEH 66
>pdb|3DIV|A Chain A, Crystal Structure Of Laccase From Cerrena Maxima At 1.76a
Resolution
Length = 499
Score = 30.0 bits (66), Expect = 1.9, Method: Compositional matrix adjust.
Identities = 18/57 (31%), Positives = 29/57 (50%), Gaps = 1/57 (1%)
Query: 123 YGSKLLVANDDTVLDWRDYFDHHTLPLSRRNPSRWPSKLIPNYGKVLCDYSDEMKLL 179
+ S+ V NDDTV+ D++ H L R P+ + LI G+ D S E+ ++
Sbjct: 133 HASRYDVDNDDTVITLADWY-HTAAKLGPRFPAGADATLINGKGRAPSDTSAELSVI 188
>pdb|4AMG|A Chain A, Crystal Structure Of The Glycosyltransferase Snogd From
Streptomyces Nogalater
pdb|4AMG|B Chain B, Crystal Structure Of The Glycosyltransferase Snogd From
Streptomyces Nogalater
pdb|4AN4|A Chain A, Crystal Structure Of The Glycosyltransferase Snogd From
Streptomyces Nogalater
pdb|4AN4|B Chain B, Crystal Structure Of The Glycosyltransferase Snogd From
Streptomyces Nogalater
pdb|4AN4|C Chain C, Crystal Structure Of The Glycosyltransferase Snogd From
Streptomyces Nogalater
pdb|4AN4|D Chain D, Crystal Structure Of The Glycosyltransferase Snogd From
Streptomyces Nogalater
Length = 400
Score = 29.6 bits (65), Expect = 2.4, Method: Compositional matrix adjust.
Identities = 13/27 (48%), Positives = 17/27 (62%), Gaps = 1/27 (3%)
Query: 147 LPLSRRNPSRWPSKLIP-NYGKVLCDY 172
LP RR+P WP + +P N G VL D+
Sbjct: 204 LPEDRRSPGAWPMRYVPYNGGAVLPDW 230
>pdb|4AMB|A Chain A, Crystal Structure Of The Glycosyltransferase Snogd From
Streptomyces Nogalater
pdb|4AMB|B Chain B, Crystal Structure Of The Glycosyltransferase Snogd From
Streptomyces Nogalater
Length = 400
Score = 29.6 bits (65), Expect = 2.4, Method: Compositional matrix adjust.
Identities = 13/27 (48%), Positives = 17/27 (62%), Gaps = 1/27 (3%)
Query: 147 LPLSRRNPSRWPSKLIP-NYGKVLCDY 172
LP RR+P WP + +P N G VL D+
Sbjct: 204 LPEDRRSPGAWPMRYVPYNGGAVLPDW 230
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.317 0.135 0.406
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 11,117,162
Number of Sequences: 62578
Number of extensions: 459012
Number of successful extensions: 1468
Number of sequences better than 100.0: 14
Number of HSP's better than 100.0 without gapping: 6
Number of HSP's successfully gapped in prelim test: 8
Number of HSP's that attempted gapping in prelim test: 1446
Number of HSP's gapped (non-prelim): 14
length of query: 355
length of database: 14,973,337
effective HSP length: 100
effective length of query: 255
effective length of database: 8,715,537
effective search space: 2222461935
effective search space used: 2222461935
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 52 (24.6 bits)