BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 018467
(355 letters)
Database: swissprot
539,616 sequences; 191,569,459 total letters
Searching..................................................done
>sp|Q5XF06|TI442_ARATH Mitochondrial import inner membrane translocase subunit TIM44-2
OS=Arabidopsis thaliana GN=TIM44-2 PE=1 SV=1
Length = 469
Score = 496 bits (1276), Expect = e-139, Method: Compositional matrix adjust.
Identities = 237/359 (66%), Positives = 293/359 (81%), Gaps = 12/359 (3%)
Query: 1 MKEKISAATEEVKGTFRTGSTDTSAKHDDDVRDGFKASSGEEKQKQTVSSDTAETFYGKL 60
+K+K SAATEEVK +F+ G +++ G + GE++Q+Q+ S++ +TF+GK
Sbjct: 119 VKDKFSAATEEVKESFKLGKEESAESA---SSSGTGTTEGEKQQQQSGSTEEQDTFFGKF 175
Query: 61 KSSISSPKFTLAFQKLKEAKVVDLAKKGYDIVKDELSGSPSKRKHLEYTPSPSWTGEKST 120
KSSISSPK + AF K +D AKKG DIVKDEL G+PSKRKHLEYTP P +TGE+ST
Sbjct: 176 KSSISSPKLSEAFHK-----PLDFAKKGLDIVKDELRGNPSKRKHLEYTPPPPFTGERST 230
Query: 121 RTDLVVTPSKKSMWSK----LKEKMQGYPVFKRITGISEPVVTKGQEIAEDVRERWETSD 176
RT++V+ P+K+S W K L+EKMQGYPVFKR++G+SEPVV K QEIAEDVRE+WETSD
Sbjct: 231 RTEMVIMPTKQSKWQKKWESLREKMQGYPVFKRLSGMSEPVVNKSQEIAEDVREKWETSD 290
Query: 177 NPIVHKIQDMNETIFQETDAAASIKEIRRRDPSFSLPDFVSEVQEAIRPVLSAYMKGDVE 236
NPIVHKIQDMNE IF+ET +A++ KEIRRRDPSFSLPDFVSE+QEAIRPVL+AY KGD +
Sbjct: 291 NPIVHKIQDMNERIFEETGSASTYKEIRRRDPSFSLPDFVSEIQEAIRPVLNAYSKGDAK 350
Query: 237 TLKKYCSPEVIERCKAEHTAYQSHGIFFDNRILHVSEVEVRETKMMGSSPIIIVAFQTQQ 296
TLKKYCS E+IERC AEH A+ S G FFD+++LHVSEV+++ETKMMG++P+IIV FQTQ+
Sbjct: 351 TLKKYCSKELIERCTAEHRAFTSQGYFFDHKLLHVSEVDIQETKMMGTTPVIIVRFQTQE 410
Query: 297 IYCVRDKHGTITEGGKDTIQTVYYAWAMQQVDAEELGEDVLYPIWKLREMQQLGVQALI 355
I+CVRD+ G I EGG+DTI TVYY WAMQQVDA ELGED +YPIW+LREM + GVQALI
Sbjct: 411 IFCVRDQDGKIKEGGQDTIHTVYYDWAMQQVDAAELGEDAIYPIWRLREMLRAGVQALI 469
>sp|Q1PF33|TI441_ARATH Mitochondrial import inner membrane translocase subunit TIM44-1
OS=Arabidopsis thaliana GN=TIM44-1 PE=2 SV=1
Length = 474
Score = 467 bits (1201), Expect = e-131, Method: Compositional matrix adjust.
Identities = 223/359 (62%), Positives = 282/359 (78%), Gaps = 9/359 (2%)
Query: 1 MKEKISAATEEVKGTFRTGSTDTSAKHDDDVRDGFKASSGEEKQKQTVSSDTAETFYGKL 60
+K+K+SAA+EEVK +F+ G + + + G +AS GE ++Q+ S++ TF+ K
Sbjct: 121 VKDKLSAASEEVKESFKLGKEENA---ESASSSGTRASQGE--KQQSGSTEELHTFFAKF 175
Query: 61 KSSISSPKFTLAFQKLKEAKVVDLAKKGYDIVKDELSGSPSKRKHLEYTPSPSWTGEKST 120
KSS+SSPK + F +LKEAK D+ K+ DIVKDEL G+PS++K LE+TP P +TGE+S
Sbjct: 176 KSSLSSPKVSEVFYRLKEAKPFDIVKQALDIVKDELRGNPSRKKFLEHTPPPPFTGERSM 235
Query: 121 RTDLVVTPSKKSM----WSKLKEKMQGYPVFKRITGISEPVVTKGQEIAEDVRERWETSD 176
RT++VVT +K+S W +EKMQG PVFKR++G+SEPVV K QEIAEDVRE WETSD
Sbjct: 236 RTEMVVTQTKQSKLQQKWESFREKMQGSPVFKRLSGMSEPVVNKSQEIAEDVREIWETSD 295
Query: 177 NPIVHKIQDMNETIFQETDAAASIKEIRRRDPSFSLPDFVSEVQEAIRPVLSAYMKGDVE 236
NPIVHKIQDMNE +ETD+A++ KEIR RDPSFSLPDF +E++E I+PVL+AY +GDVE
Sbjct: 296 NPIVHKIQDMNEKFLKETDSASTYKEIRSRDPSFSLPDFAAEIEEVIKPVLNAYSEGDVE 355
Query: 237 TLKKYCSPEVIERCKAEHTAYQSHGIFFDNRILHVSEVEVRETKMMGSSPIIIVAFQTQQ 296
TLKKYCS EVIERC AE TAYQ+HG+ FDN++LH+SEV V TKMMG SPIII FQTQ+
Sbjct: 356 TLKKYCSKEVIERCTAERTAYQTHGVLFDNKLLHISEVSVSVTKMMGDSPIIIAKFQTQE 415
Query: 297 IYCVRDKHGTITEGGKDTIQTVYYAWAMQQVDAEELGEDVLYPIWKLREMQQLGVQALI 355
IYCVRD++G I EGG+DTI TVY+ WAMQQV+ ELGED +YPIW+LREM + GVQALI
Sbjct: 416 IYCVRDENGEIQEGGQDTIHTVYHEWAMQQVETTELGEDAIYPIWRLREMCRNGVQALI 474
>sp|O35857|TIM44_MOUSE Mitochondrial import inner membrane translocase subunit TIM44
OS=Mus musculus GN=Timm44 PE=2 SV=2
Length = 452
Score = 94.0 bits (232), Expect = 1e-18, Method: Compositional matrix adjust.
Identities = 52/188 (27%), Positives = 99/188 (52%), Gaps = 12/188 (6%)
Query: 167 DVRERWETSDNPIVH-------KIQDMNETIFQETDAAASIKEIRRRDPSFSLPDFVSEV 219
+++ +++ SDN ++ K+ D+ +F +T+ + + EI R DP+F F+ +
Sbjct: 260 EMKMKYDESDNVLIRASRALTDKVTDLLGGLFSKTEMSEVLTEILRVDPTFDKDHFLHQC 319
Query: 220 QEAIRP-VLSAYMKGDVETLKKYCSPEVIERCKAEHTAYQSHGIFFDNRILHVSEVEVRE 278
+ I P +L A + G+++ LK +C + ++ G F +RIL +S V++
Sbjct: 320 ETDIIPNILEAMISGELDILKDWCYEATYSQLAHPIQQAKALGFQFHSRILDISNVDLAM 379
Query: 279 TKMMGSSPIIIVAFQTQQIYCVRDKHGTITEGGKDTIQTVYYAWAMQQVDAEELGEDVLY 338
KMM P++IV FQ Q + +++ G + +G D +Q + Y WA+ + D EEL Y
Sbjct: 380 GKMMEQGPVLIVTFQAQVVMVIKNSKGEVYDGDPDKVQRMLYVWALCR-DQEELNP---Y 435
Query: 339 PIWKLREM 346
W+L ++
Sbjct: 436 AAWRLLDI 443
>sp|O43615|TIM44_HUMAN Mitochondrial import inner membrane translocase subunit TIM44
OS=Homo sapiens GN=TIMM44 PE=1 SV=2
Length = 452
Score = 92.8 bits (229), Expect = 3e-18, Method: Compositional matrix adjust.
Identities = 52/185 (28%), Positives = 95/185 (51%), Gaps = 12/185 (6%)
Query: 167 DVRERWETSDNPIVH-------KIQDMNETIFQETDAAASIKEIRRRDPSFSLPDFVSEV 219
+++ +++ SDN + K+ D+ +F +T+ + + EI R DP+F F+ +
Sbjct: 260 EMKMKYDESDNAFIRASRALTDKVTDLLGGLFSKTEMSEVLTEILRVDPAFDKDRFLKQC 319
Query: 220 QEAIRP-VLSAYMKGDVETLKKYCSPEVIERCKAEHTAYQSHGIFFDNRILHVSEVEVRE 278
+ I P VL A + G+++ LK +C + ++ G+ F +RIL + V++
Sbjct: 320 ENDIIPNVLEAMISGELDILKDWCYEATYSQLAHPIQQAKALGLQFHSRILDIDNVDLAM 379
Query: 279 TKMMGSSPIIIVAFQTQQIYCVRDKHGTITEGGKDTIQTVYYAWAMQQVDAEELGEDVLY 338
KMM P++I+ FQ Q + VR+ G + EG D + + Y WA+ + D +EL Y
Sbjct: 380 GKMMEQGPVLIITFQAQLVMVVRNPKGEVVEGDPDKVLRMLYVWALCR-DQDELNP---Y 435
Query: 339 PIWKL 343
W+L
Sbjct: 436 AAWRL 440
>sp|O35094|TIM44_RAT Mitochondrial import inner membrane translocase subunit TIM44
OS=Rattus norvegicus GN=Timm44 PE=2 SV=1
Length = 453
Score = 92.4 bits (228), Expect = 5e-18, Method: Compositional matrix adjust.
Identities = 51/188 (27%), Positives = 99/188 (52%), Gaps = 12/188 (6%)
Query: 167 DVRERWETSDNPIVH-------KIQDMNETIFQETDAAASIKEIRRRDPSFSLPDFVSEV 219
+++ +++ SDN ++ K+ D+ +F +T+ + + EI R DP+F F+ +
Sbjct: 261 EMKMKYDESDNVLIRASRALTDKVTDLLGGLFSKTEMSEVLTEILRVDPTFDKDRFLHQC 320
Query: 220 QEAIRP-VLSAYMKGDVETLKKYCSPEVIERCKAEHTAYQSHGIFFDNRILHVSEVEVRE 278
+ I P +L A + G+++ LK +C + ++ G+ F +RIL +S V++
Sbjct: 321 ETDIIPNILEAMISGELDILKDWCYEATYNQLAHSIQQAKALGLQFHSRILDISNVDLAM 380
Query: 279 TKMMGSSPIIIVAFQTQQIYCVRDKHGTITEGGKDTIQTVYYAWAMQQVDAEELGEDVLY 338
KMM P++IV FQ Q + +++ G + +G D + + Y WA+ + D EEL Y
Sbjct: 381 GKMMEQGPVLIVTFQAQLVMVIKNPKGEVFDGDPDKVLRMLYVWALCR-DQEELNP---Y 436
Query: 339 PIWKLREM 346
W+L ++
Sbjct: 437 AAWRLLDI 444
>sp|O60084|TIM44_SCHPO Mitochondrial import inner membrane translocase subunit tim44
OS=Schizosaccharomyces pombe (strain 972 / ATCC 24843)
GN=tim44 PE=3 SV=1
Length = 427
Score = 85.1 bits (209), Expect = 7e-16, Method: Compositional matrix adjust.
Identities = 52/176 (29%), Positives = 94/176 (53%), Gaps = 11/176 (6%)
Query: 166 EDVRERWETSDNPIVHKIQDMNETI-------FQETDAAASIKEIRRRDPSFSLPDFVSE 218
+++++ ++ S++PIV I+DM ++I F ET+A+ ++ + DPSF+ F+
Sbjct: 229 QELKKSYQESEHPIVSSIRDMADSISGVWSRMFSETEASQVMRRFKEIDPSFNTEHFLQY 288
Query: 219 VQEAIRP-VLSAYMKGDVETLKKYCSPEVIERCKAEHTAYQSHGIFFDNRILHVSEVEVR 277
++E I P V AY+KGD E LK + S + Y HG+ +IL + V++
Sbjct: 289 LREYIVPEVTEAYVKGDKEVLKTWLSEAPFSVYETTTKEYAKHGVVSVGKILDIRGVDIM 348
Query: 278 ETKMMGSS--PIIIVAFQTQQIYCVRD-KHGTITEGGKDTIQTVYYAWAMQQVDAE 330
+++ + P+ IV F+TQ+++ +D G + G D IQ YA +V+ E
Sbjct: 349 SQRLLQPNDIPVFIVTFRTQEVHMFKDASSGELVAGKDDRIQQCTYASVFTRVEDE 404
>sp|Q01852|TIM44_YEAST Mitochondrial import inner membrane translocase subunit TIM44
OS=Saccharomyces cerevisiae (strain ATCC 204508 / S288c)
GN=TIM44 PE=1 SV=1
Length = 431
Score = 82.0 bits (201), Expect = 6e-15, Method: Compositional matrix adjust.
Identities = 60/210 (28%), Positives = 102/210 (48%), Gaps = 10/210 (4%)
Query: 148 KRITGISEPVVTKGQEIAEDVRERWETSDNPIV---HKIQDMNETIFQETDAAASIKEIR 204
K++ E V G+ I + W+ S+NP++ KI + F ET+++ + +
Sbjct: 220 KKVEDFKEKTVV-GRSIQSLKNKLWDESENPLIVVMRKITNKVGGFFAETESSRVYSQFK 278
Query: 205 RRDPSFSLPDFVSEVQEAIRP-VLSAYMKGDVETLKKYCSPEVIERCKAEHTAYQSHGIF 263
DP+FS F ++E I P +L AY+KGDV+ LKK+ S A+ ++ ++
Sbjct: 279 LMDPTFSNESFTRHLREYIVPEILEAYVKGDVKVLKKWFSEAPFNVYAAQQKIFKEQDVY 338
Query: 264 FDNRILHVSEVEVRETKMMGSS--PIIIVAFQTQQIYCVRDKH-GTITEGGKDTIQTVYY 320
D RIL + VE+ K++ P+++V + Q+I R K G I G + I Y
Sbjct: 339 ADGRILDIRGVEIVSAKLLAPQDIPVLVVGCRAQEINLYRKKKTGEIAAGDEANILMSSY 398
Query: 321 AWAMQQVDAEELGEDVLYPIWKLREMQQLG 350
A + D E++ +D WK+ E + G
Sbjct: 399 AMVFTR-DPEQIDDDETEG-WKILEFVRGG 426
>sp|O02161|TIM44_CAEEL Probable mitochondrial import inner membrane translocase subunit
tim-44 OS=Caenorhabditis elegans GN=tim-44 PE=3 SV=1
Length = 425
Score = 68.6 bits (166), Expect = 8e-11, Method: Compositional matrix adjust.
Identities = 47/187 (25%), Positives = 94/187 (50%), Gaps = 10/187 (5%)
Query: 167 DVRERWETSDNPIVHKIQDMNE---TIFQ-ETDAAASIKEIRRRDPSFSLPDFVSEVQEA 222
D + +++ SDN V ++ + E ++F + + + + EI + D +F +++ +
Sbjct: 235 DWKIKYDESDNMAVRMMRGVTEKIGSVFSGQNEVSEVLTEIHKIDANFDKQEWLRFCETK 294
Query: 223 IRP-VLSAYMKGDVETLKKYCSPEVIERCKAEHTAYQS-HGIFFDNRILHVSEVEVRETK 280
I P +L A+++ D+E L+ +C + YQ H D+RI+ +++VE+ K
Sbjct: 295 IIPNILEAFIRFDLEVLQSWCHERAYTQLSTVVKEYQKMHFSTKDSRIIDINKVEMATGK 354
Query: 281 MMGSSPIIIVAFQTQQIYCVRDKHGTITEGGKDTIQTVYYAWAMQQVDAEELGEDVLYPI 340
MM P++I++FQ I ++ G + EG D + + + W + + D EE +
Sbjct: 355 MMEQGPVLIISFQVYMINVTKNADGKVVEGDPDNPKRINHIWVLCR-DVEEYNPAL---A 410
Query: 341 WKLREMQ 347
WKL E+
Sbjct: 411 WKLLEVH 417
>sp|Q9VCX3|RM45_DROME Probable 39S ribosomal protein L45, mitochondrial OS=Drosophila
melanogaster GN=mRpL45 PE=2 SV=1
Length = 361
Score = 38.5 bits (88), Expect = 0.078, Method: Compositional matrix adjust.
Identities = 31/143 (21%), Positives = 67/143 (46%), Gaps = 14/143 (9%)
Query: 188 ETIFQETDAAASIKEIRRRDPSFSLPDFVSEVQEAIRPVLSAYMKGDVETLKKY----CS 243
E + +++ + ++++IR D +FS DF +E Q+ + D ++++ C
Sbjct: 141 EFLEKKSKSLMAVRKIRSYDENFSSDDFGAEAQDIYIQAHTHMAAKDKYKIREFVSERCY 200
Query: 244 PEVIERCKAEHTAYQSHGIFFDNRILH--VSEVEVRETKMMGSSPIIIVAFQTQQIYCVR 301
PE++ K + ++ R++H V+EV +E + + V F +QQ+ +
Sbjct: 201 PEMMHNVKDKTIRWKFLQSLEPPRVVHARVTEVITKENQFAQ----VTVRFHSQQMLAIY 256
Query: 302 DKHGTITEGG----KDTIQTVYY 320
D+ G + G KD ++ V +
Sbjct: 257 DRFGRLMHGSEIITKDVLEYVVF 279
>sp|Q13535|ATR_HUMAN Serine/threonine-protein kinase ATR OS=Homo sapiens GN=ATR PE=1
SV=3
Length = 2644
Score = 37.4 bits (85), Expect = 0.20, Method: Compositional matrix adjust.
Identities = 37/145 (25%), Positives = 67/145 (46%), Gaps = 16/145 (11%)
Query: 98 GSPSKRKHLEYTPSPSWTGEKSTRTDLVVTPSKKS-MWSKLKEKMQGYPVFKRITGISEP 156
G KR+ L + +PS K T V ++KS +WS LK+K + + +G+ P
Sbjct: 426 GISPKRRRLSSSLNPSKRAPKQTEEIKHVDMNQKSILWSALKQKAESLQISLEYSGLKNP 485
Query: 157 VVTKGQEIAEDVRERWETSDNPIVH-KIQDMNETIFQETDAAASIKEIRRRDPSFSLP-- 213
V+ E+ E + + + VH Q+MN F++ + ++ PS +
Sbjct: 486 VI----EMLEGIAVVLQLTALCTVHCSHQNMNCRTFKDCQHKS------KKKPSVVITWM 535
Query: 214 --DFVSEVQEAIRPVLSAYMKGDVE 236
DF ++V ++ R +L + K D+E
Sbjct: 536 SLDFYTKVLKSCRSLLESVQKLDLE 560
>sp|Q311X7|GUAA_DESDG GMP synthase [glutamine-hydrolyzing] OS=Desulfovibrio desulfuricans
(strain G20) GN=guaA PE=3 SV=1
Length = 516
Score = 35.4 bits (80), Expect = 0.71, Method: Compositional matrix adjust.
Identities = 46/203 (22%), Positives = 81/203 (39%), Gaps = 39/203 (19%)
Query: 88 GYDIVKDELSGSPSKRKHLEYTP--------SPSWTGEKSTRTDLVVTPSKKSMWSKLKE 139
G ++ L G S + EY P SP W G K+ + V W +
Sbjct: 85 GMQLLAHNLGGELSCSETREYGPADLKFCAGSPLWDGLKTDESSRV--------WMSHGD 136
Query: 140 KMQGYPVFKRITGISEPVVTKGQEIAEDVRERWETSDNPIVHKIQDMNETIFQETDAAAS 199
+++ P +TG +E + +A+D R + +P VH +D + A
Sbjct: 137 RVKKVPAGFTVTGSTETLEVAA--MADDQRRIYAVQFHPEVHHSEDGVRMLHNFLFKIAG 194
Query: 200 IKEIRRRDPSFSLPDF----VSEVQEAIRP---VLSAYMKGDVETLKKYCSPEVIERCKA 252
IK +S+ F + EV E + P V+ A + G +++ V+
Sbjct: 195 IKA------DWSMSSFCERVIKEVSEQVGPDDQVVCA-LSGGIDS-------TVVAVLLH 240
Query: 253 EHTAYQSHGIFFDNRILHVSEVE 275
+ ++ H IF DN +L ++EV+
Sbjct: 241 KAIGHRLHCIFVDNGVLRLNEVD 263
>sp|Q0VBM2|FA83B_MOUSE Protein FAM83B OS=Mus musculus GN=Fam83b PE=1 SV=1
Length = 1012
Score = 33.9 bits (76), Expect = 2.1, Method: Compositional matrix adjust.
Identities = 22/74 (29%), Positives = 40/74 (54%), Gaps = 5/74 (6%)
Query: 90 DIVKDELSGSPSKRKHLEYTPSPSWTGEKSTRTDLVVTPSKKSMWSKLKEKMQGYPVFKR 149
D+ K+E + P+ +K + +PS G + R+ L +TP K+ +K K P F R
Sbjct: 745 DVNKEEPNKEPNSKKEGKASPSFLKKGSQKLRSLLSLTPEKRESLAKNKA-----PAFYR 799
Query: 150 ITGISEPVVTKGQE 163
+ S+ +V++G+E
Sbjct: 800 MCSSSDTLVSEGEE 813
>sp|Q5T0W9|FA83B_HUMAN Protein FAM83B OS=Homo sapiens GN=FAM83B PE=1 SV=1
Length = 1011
Score = 33.1 bits (74), Expect = 3.7, Method: Compositional matrix adjust.
Identities = 23/74 (31%), Positives = 40/74 (54%), Gaps = 5/74 (6%)
Query: 90 DIVKDELSGSPSKRKHLEYTPSPSWTGEKSTRTDLVVTPSKKSMWSKLKEKMQGYPVFKR 149
D+ K+E + + +K ++ +PS G + R+ L +TP KK SK K P F R
Sbjct: 745 DVNKEESNKELASKKEVKGSPSFLKKGSQKLRSLLSLTPDKKENLSKNKA-----PAFYR 799
Query: 150 ITGISEPVVTKGQE 163
+ S+ +V++G+E
Sbjct: 800 LCSSSDTLVSEGEE 813
>sp|Q86WI1|PKHL1_HUMAN Fibrocystin-L OS=Homo sapiens GN=PKHD1L1 PE=2 SV=2
Length = 4243
Score = 32.0 bits (71), Expect = 6.5, Method: Composition-based stats.
Identities = 16/55 (29%), Positives = 26/55 (47%), Gaps = 3/55 (5%)
Query: 272 SEVEVRETKMMGSSPIIIVAFQTQQIYCVRDKHGTI---TEGGKDTIQTVYYAWA 323
S + T ++GS P + + I C+ G I T GKD++ + YAW+
Sbjct: 1356 STIPAENTVLLGSIPCNVTSSSENVIKCILHSTGNIFRITNNGKDSVHGLGYAWS 1410
>sp|Q9QBU0|RDRP_PMTVS Replicase large subunit OS=Potato mop-top virus (isolate
Potato/Sweden/Sw) GN=rep PE=3 SV=3
Length = 1812
Score = 32.0 bits (71), Expect = 7.6, Method: Compositional matrix adjust.
Identities = 16/58 (27%), Positives = 35/58 (60%), Gaps = 3/58 (5%)
Query: 146 VFKRITGISEPVVTKGQEIAEDVRERWETSDNPI---VHKIQDMNETIFQETDAAASI 200
V K +++ VVT G+E AED+RER+++ N + +++ ++ + +T + A++
Sbjct: 1024 VVKEANLVNQYVVTIGREAAEDLRERFKSERNATATQLKRVRTVDSYLLNDTQSRANV 1081
>sp|Q6F7W6|YBEY_ACIAD Endoribonuclease YbeY OS=Acinetobacter sp. (strain ADP1) GN=ybeY
PE=3 SV=1
Length = 159
Score = 31.6 bits (70), Expect = 9.2, Method: Compositional matrix adjust.
Identities = 20/69 (28%), Positives = 35/69 (50%), Gaps = 7/69 (10%)
Query: 202 EIRRRDPSFSLPDFVSEVQEAIRPVLSAYMKGDVETLKKYCSPEVIERCKAEHTAYQSHG 261
E R +D S ++ F S++ E + P+L A GD+ C P V++ +H Q+H
Sbjct: 58 EYRGKDKSTNVLSFPSDIPEEVLPLLDARPLGDL----VICIPVVLDEAIEQHKTAQAH- 112
Query: 262 IFFDNRILH 270
F + ++H
Sbjct: 113 --FMHMLVH 119
Database: swissprot
Posted date: Mar 23, 2013 2:32 AM
Number of letters in database: 191,569,459
Number of sequences in database: 539,616
Lambda K H
0.313 0.129 0.363
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 129,781,303
Number of Sequences: 539616
Number of extensions: 5399795
Number of successful extensions: 12200
Number of sequences better than 100.0: 50
Number of HSP's better than 100.0 without gapping: 8
Number of HSP's successfully gapped in prelim test: 47
Number of HSP's that attempted gapping in prelim test: 12165
Number of HSP's gapped (non-prelim): 73
length of query: 355
length of database: 191,569,459
effective HSP length: 118
effective length of query: 237
effective length of database: 127,894,771
effective search space: 30311060727
effective search space used: 30311060727
T: 11
A: 40
X1: 16 ( 7.2 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 42 (21.9 bits)
S2: 62 (28.5 bits)