Query 018468
Match_columns 355
No_of_seqs 163 out of 1531
Neff 9.4
Searched_HMMs 46136
Date Fri Mar 29 09:16:39 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/018468.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/018468hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 KOG1276 Protoporphyrinogen oxi 100.0 4.2E-46 9.2E-51 334.1 22.9 342 1-354 40-410 (491)
2 COG1232 HemY Protoporphyrinoge 100.0 8.4E-43 1.8E-47 325.8 26.2 320 1-354 29-364 (444)
3 TIGR00562 proto_IX_ox protopor 100.0 2.8E-41 6E-46 327.0 28.3 331 1-354 33-378 (462)
4 PLN02576 protoporphyrinogen ox 100.0 1.4E-40 3.1E-45 324.7 28.5 341 1-354 40-402 (496)
5 PRK12416 protoporphyrinogen ox 100.0 1.6E-39 3.4E-44 314.6 29.4 322 1-354 34-379 (463)
6 PRK11883 protoporphyrinogen ox 100.0 7.5E-34 1.6E-38 274.3 29.3 321 1-354 29-371 (451)
7 PRK07208 hypothetical protein; 100.0 1.6E-26 3.4E-31 224.9 23.4 328 1-354 31-377 (479)
8 TIGR03467 HpnE squalene-associ 99.9 2.2E-26 4.9E-31 219.9 19.9 296 1-354 14-338 (419)
9 PRK07233 hypothetical protein; 99.9 1.4E-25 2.9E-30 215.6 23.9 305 1-354 26-348 (434)
10 PLN02268 probable polyamine ox 99.9 2.2E-26 4.8E-31 221.1 14.7 285 1-354 27-346 (435)
11 PLN02568 polyamine oxidase 99.9 1.8E-24 3.8E-29 210.8 14.1 329 1-354 37-411 (539)
12 KOG0685 Flavin-containing amin 99.9 5E-24 1.1E-28 195.3 11.5 299 1-355 49-394 (498)
13 PLN02612 phytoene desaturase 99.9 2.1E-22 4.5E-27 198.3 21.0 304 1-354 120-460 (567)
14 PLN02529 lysine-specific histo 99.9 8.8E-23 1.9E-27 202.9 18.4 288 1-354 187-505 (738)
15 PLN03000 amine oxidase 99.9 8.6E-23 1.9E-27 203.8 18.3 291 1-354 211-529 (881)
16 TIGR02731 phytoene_desat phyto 99.9 2.3E-22 4.9E-27 194.3 20.5 308 1-354 26-369 (453)
17 TIGR02732 zeta_caro_desat caro 99.9 2.8E-22 6.2E-27 193.7 17.7 252 1-287 26-321 (474)
18 PLN02487 zeta-carotene desatur 99.9 1.9E-21 4.2E-26 189.7 21.9 316 1-354 102-470 (569)
19 PLN02328 lysine-specific histo 99.9 1.3E-21 2.9E-26 195.4 15.9 300 1-354 265-585 (808)
20 PLN02676 polyamine oxidase 99.8 2.3E-20 4.9E-25 180.7 13.3 295 1-354 54-384 (487)
21 COG1231 Monoamine oxidase [Ami 99.8 6.4E-20 1.4E-24 168.5 13.3 302 1-354 34-357 (450)
22 PLN02976 amine oxidase 99.8 7.9E-19 1.7E-23 180.4 15.6 317 1-354 720-1095(1713)
23 PF01593 Amino_oxidase: Flavin 99.8 1.6E-20 3.5E-25 179.6 3.2 313 1-354 18-362 (450)
24 COG2907 Predicted NAD/FAD-bind 99.8 7.2E-19 1.6E-23 155.1 12.4 247 1-284 34-305 (447)
25 KOG0029 Amine oxidase [Seconda 99.7 1.1E-16 2.3E-21 154.0 16.5 142 199-354 212-368 (501)
26 TIGR02734 crtI_fam phytoene de 99.6 4.4E-13 9.5E-18 131.3 22.2 296 1-338 25-378 (502)
27 TIGR02733 desat_CrtD C-3',4' d 99.5 4.3E-13 9.4E-18 131.0 19.7 294 1-336 28-375 (492)
28 PTZ00363 rab-GDP dissociation 99.1 7E-09 1.5E-13 99.1 20.9 208 1-245 31-285 (443)
29 TIGR02730 carot_isom carotene 99.1 8.2E-09 1.8E-13 101.0 20.6 293 1-336 27-375 (493)
30 COG3349 Uncharacterized conser 98.9 1.1E-08 2.4E-13 96.6 12.3 153 1-156 27-193 (485)
31 COG1233 Phytoene dehydrogenase 98.7 1.8E-07 3.8E-12 91.2 11.8 46 1-48 30-76 (487)
32 TIGR00031 UDP-GALP_mutase UDP- 98.6 1.7E-07 3.6E-12 87.7 10.3 139 1-152 28-171 (377)
33 COG3380 Predicted NAD/FAD-depe 98.6 5.4E-08 1.2E-12 84.2 5.8 121 220-354 133-255 (331)
34 PF13450 NAD_binding_8: NAD(P) 98.3 4.9E-07 1.1E-11 63.0 3.6 44 1-44 23-68 (68)
35 COG0562 Glf UDP-galactopyranos 98.0 3.9E-05 8.4E-10 68.4 9.0 139 1-152 28-171 (374)
36 PRK13977 myosin-cross-reactive 97.8 8.1E-05 1.8E-09 72.7 8.5 144 1-159 53-204 (576)
37 PF00996 GDI: GDP dissociation 97.3 0.0046 1E-07 59.0 13.2 273 2-331 32-352 (438)
38 PF07156 Prenylcys_lyase: Pren 96.0 0.032 6.9E-07 52.3 8.4 104 112-252 69-189 (368)
39 KOG1439 RAB proteins geranylge 94.0 0.21 4.5E-06 46.4 7.3 71 21-93 72-142 (440)
40 KOG4254 Phytoene desaturase [C 92.7 1.6 3.4E-05 41.6 10.8 136 198-339 256-429 (561)
41 COG5044 MRS6 RAB proteins gera 88.8 1.9 4.1E-05 39.9 7.5 101 21-124 73-176 (434)
42 PF13454 NAD_binding_9: FAD-NA 61.4 10 0.00022 30.8 3.4 25 219-247 130-154 (156)
43 PF06100 Strep_67kDa_ant: Stre 59.3 48 0.001 32.4 7.9 43 1-44 33-77 (500)
44 PF13738 Pyr_redox_3: Pyridine 42.3 24 0.00051 29.6 2.8 27 219-249 111-137 (203)
45 PRK06444 prephenate dehydrogen 28.9 78 0.0017 26.9 3.8 18 238-255 31-48 (197)
46 PF03807 F420_oxidored: NADP o 20.1 86 0.0019 22.5 2.2 18 238-255 61-78 (96)
No 1
>KOG1276 consensus Protoporphyrinogen oxidase [Coenzyme transport and metabolism]
Probab=100.00 E-value=4.2e-46 Score=334.15 Aligned_cols=342 Identities=35% Similarity=0.570 Sum_probs=262.6
Q ss_pred CeeecCCCCCceEEEee-cCCeEEcccCCeeecCcH---HHHHHHHHcCCcccccccc----CCCceEEEECCEEeecCC
Q 018468 1 MVFEADERAGGKLRSIS-KDGLIWDEGANTMTESEM---EVKGLLDDLGIREKQQFPI----SQYKRYVVRNGVPFLIPT 72 (355)
Q Consensus 1 ~vlEA~drvGGri~T~~-~~g~~~d~G~~~~~~~~~---~~~~l~~~lGl~~~~~~~~----~~~~~~i~~~g~~~~~p~ 72 (355)
+|+||++|+||+|+|.+ .+|+.||.||+.+.+..+ ++++|+++|||+++++..+ ...++|+|++|++..+|.
T Consensus 40 ~l~Ea~~RvGGwirS~r~~ng~ifE~GPrtlrpag~~g~~~l~lv~dLGl~~e~~~i~~~~paaknr~l~~~~~L~~vP~ 119 (491)
T KOG1276|consen 40 TLFEASPRVGGWIRSDRMQNGFIFEEGPRTLRPAGPGGAETLDLVSDLGLEDELQPIDISHPAAKNRFLYVPGKLPTVPS 119 (491)
T ss_pred EEEecCCcccceeeeccCCCceeeccCCCccCcCCcchhHHHHHHHHcCccceeeecCCCChhhhheeeccCcccccCCc
Confidence 47999999999999954 569999999999997765 8999999999987754333 345689999999999998
Q ss_pred CchhhhhcccCCh--hHHHHHhcccccccCCCcccccCCCCCCCHHHHHHHhhcHHHHHHHhhhhhhccccCCcccchHH
Q 018468 73 NPIALLTSNFLSA--QSKFQIILEPFLWKKSDSAKVSAEDAKESVGGFFQRHFGREVVDFLIDPFVAGTSAGDPESLVMR 150 (355)
Q Consensus 73 ~~~~~l~~~~ls~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~sv~~~l~~~~~~~~~~~~~~p~~~~~~~~~~~~lS~~ 150 (355)
++...+.+.+-+. .-...++.++|..+.. ....||||++|++||||+++.+++++|||+|+|++|++++|++
T Consensus 120 sl~~s~~~~l~p~~k~L~~a~l~e~fr~~~~------~~~~dESV~sF~~RrfG~eV~d~~isp~i~GiyAgD~~~LSmk 193 (491)
T KOG1276|consen 120 SLVGSLKFSLQPFGKPLLEAFLRELFRKKVS------DPSADESVESFARRRFGKEVADRLISPFIRGIYAGDPSELSMK 193 (491)
T ss_pred ccccccccccCcccchhHHHHHhhhccccCC------CCCccccHHHHHHHhhhHHHHHHHHHHHhCccccCChHHhhHH
Confidence 8766443332221 1223456666654322 3567999999999999999999999999999999999999999
Q ss_pred hhchHHHHHHHhhCchHHHHHHhhhhhhhhhhhhhcCchhhhcCCcceeEeCcchhhHHhhccc----c------C----
Q 018468 151 HSFPELWNLEKRYGSVIAGAIKSKFSARKEKSAEAKGSSEKKRRQRGSFSFLGGMQVLSLSYSH----D------G---- 216 (355)
Q Consensus 151 ~~l~~l~~~~~~~gs~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~gG~~~l~~~l~~----~------~---- 216 (355)
++|+.+|+.|+++||++.|++...+...+..+.+..+..+....++.++.++||+++|+.++.. + +
T Consensus 194 ~~F~~l~~~Eqk~Gsi~~G~i~~~~~~~~~k~~e~~~~~~~~~e~~~~~sl~gGle~lP~a~~~~L~~~~v~i~~~~~~~ 273 (491)
T KOG1276|consen 194 SSFGKLWKVEQKHGSIILGTIRAKFARKRTKKAETALSAQAKKEKWTMFSLKGGLETLPKALRKSLGEREVSISLGLKLS 273 (491)
T ss_pred HHHHHHHHHHHhccchhHHHHHHHHHhhcCCCccchhhhhhcccccchhhhhhhHhHhHHHHHHHhcccchhhhcccccc
Confidence 9999999999999999999987654433333223333333345566788999999999987632 1 0
Q ss_pred ---cccCCCeEEEecCCCcccceeecCEEEEcCChhhhhHhhhccCCCCcccCCCCCCCCcceEEEEEEecCCCCCCCCC
Q 018468 217 ---RSALENWSLCSSNQEKQSLGLSFDAVIMTAPLCNVKEMKITKGGNLFPLDFLPEVIYMPLSVIITTFKKENVRRPLE 293 (355)
Q Consensus 217 ---~~~~~~~~V~~~~g~~~~~~~~ad~VI~a~P~~~l~~l~~~~~~~~~~~~~l~~~~~~~v~~v~l~~~~~~~~~~~~ 293 (355)
....++|.+++.+.+ .......+++..|+|+..++.+ +++..+-+..+|..+.|.+|++|++.|.++....+++
T Consensus 274 ~~sk~~~~~~~~tl~~~~-~~~~~~~~~~~~t~~~~k~a~l--l~~~~~sls~~L~ei~y~~V~vVn~~yp~~~~~~pl~ 350 (491)
T KOG1276|consen 274 GNSKSRSGNWSLTLVDHS-GTQRVVVSYDAATLPAVKLAKL--LRGLQNSLSNALSEIPYVPVAVVNTYYPKEKIDLPLQ 350 (491)
T ss_pred cccccccCCceeEeEcCC-CceeeeccccccccchHHhhhh--ccccchhhhhhhhcCCCCceEEEEEeccCcccccccc
Confidence 112356888876542 1124556777789999999999 5766677788999999999999999998764556789
Q ss_pred ceEEEecCCCCCCCCceEEEEecCCCCCCCCCCCceEEEEEecCCC--CccccCCCchHHhhc
Q 018468 294 GFGVLVPSKEQQNGLKTLGTLFSSMMFPDRVPKDLYLYTTFVGGSR--NKELAKASTYKELQS 354 (355)
Q Consensus 294 g~g~l~~~~~~~~~~~~~~~~~~s~~~~~~~p~~~~~l~~~~~g~~--~~~~~~~sd~e~~~~ 354 (355)
|||+|+|+ +..|+..++|++|||..||.+.|.+ .+++|++|.+ ...+...|.||+++.
T Consensus 351 GFG~LvPs-~~~~~~~~LG~ifdS~~Fp~~~~s~--~vtvm~gg~~~~n~~~~~~S~ee~~~~ 410 (491)
T KOG1276|consen 351 GFGLLVPS-EPKNGFKTLGTIFDSMLFPDRSPSP--KVTVMMGGGGSTNTSLAVPSPEELVNA 410 (491)
T ss_pred cceeeccC-CCCCCCceeEEEeecccCCCCCCCc--eEEEEecccccccCcCCCCCHHHHHHH
Confidence 99999996 3335889999999999999987754 6677777644 445667888888764
No 2
>COG1232 HemY Protoporphyrinogen oxidase [Coenzyme metabolism]
Probab=100.00 E-value=8.4e-43 Score=325.83 Aligned_cols=320 Identities=25% Similarity=0.421 Sum_probs=259.4
Q ss_pred CeeecCCCCCceEEEeecCCeEEcccCCeeecCcHHHHHHHHHcCCccccccccCCCceEEEECCEEeecCCCchhhhhc
Q 018468 1 MVFEADERAGGKLRSISKDGLIWDEGANTMTESEMEVKGLLDDLGIREKQQFPISQYKRYVVRNGVPFLIPTNPIALLTS 80 (355)
Q Consensus 1 ~vlEA~drvGGri~T~~~~g~~~d~G~~~~~~~~~~~~~l~~~lGl~~~~~~~~~~~~~~i~~~g~~~~~p~~~~~~l~~ 80 (355)
+|||+++|+||.++|++.+|+.+|.|+|.|..+.+++++++++||+++.++++.. ...|+|++|+++++|.+. ++..
T Consensus 29 ~lfE~~~r~GG~l~T~~~~G~~~e~G~~~f~~~~~~~l~li~eLGled~l~~~~~-~~~~i~~~gkl~p~P~~~--i~~i 105 (444)
T COG1232 29 TLFEADDRVGGLLRTVKIDGFLFERGPHHFLARKEEILDLIKELGLEDKLLWNST-ARKYIYYDGKLHPIPTPT--ILGI 105 (444)
T ss_pred EEEecCCCCCceEEEEeeCCEEEeechhheecchHHHHHHHHHhCcHHhhccCCc-ccceEeeCCcEEECCccc--eeec
Confidence 5899999999999999999999999999998777899999999999998886543 456899999999999754 3333
Q ss_pred ccCC---hhHHHHHhcccccccCCCcccccCCCCCCCHHHHHHHhhcHHHHHHHhhhhhhccccCCcccchHHhhchHHH
Q 018468 81 NFLS---AQSKFQIILEPFLWKKSDSAKVSAEDAKESVGGFFQRHFGREVVDFLIDPFVAGTSAGDPESLVMRHSFPELW 157 (355)
Q Consensus 81 ~~ls---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~sv~~~l~~~~~~~~~~~~~~p~~~~~~~~~~~~lS~~~~l~~l~ 157 (355)
+.+. ...+.+++.+....... ...+|+||++|++++||+++++++++|+++++|+++++++|+...+|.+.
T Consensus 106 p~~~~~~~~~~~~~~~~~~~~~~~------~~~~d~sv~~f~r~~fG~ev~~~~~~pll~giy~~~~~~LS~~~~~p~~~ 179 (444)
T COG1232 106 PLLLLSSEAGLARALQEFIRPKSW------EPKQDISVGEFIRRRFGEEVVERFIEPLLEGIYAGDADKLSAAAAFPILA 179 (444)
T ss_pred CCccccchhHHHHHHHhhhcccCC------CCCCCcCHHHHHHHHHhHHHHHHHHHHHhhchhcCCHHHhhHHHhcchhh
Confidence 3322 23445555655432221 45779999999999999999999999999999999999999999999999
Q ss_pred HHHHhhCchHHHHHHhhhhhhhhhhhhhcCchhhhcCCcceeEeCcchhhHHhhcccc-------C------cccCCCeE
Q 018468 158 NLEKRYGSVIAGAIKSKFSARKEKSAEAKGSSEKKRRQRGSFSFLGGMQVLSLSYSHD-------G------RSALENWS 224 (355)
Q Consensus 158 ~~~~~~gs~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~gG~~~l~~~l~~~-------~------~~~~~~~~ 224 (355)
..++++++++.|+.....+.. ........+++||+++|+++++.+ + .+...++.
T Consensus 180 ~~e~~~~s~~~g~~~~~~~~~-------------~~~~~~~~~~~gG~~~l~~al~~~l~~~i~~~~~V~~i~~~~~~~~ 246 (444)
T COG1232 180 RAERKYGSLLRGAKKEGLPKQ-------------SLKKEKFGYLRGGLQSLIEALAEKLEAKIRTGTEVTKIDKKGAGKT 246 (444)
T ss_pred hhhhhhcchhhhhhhccCccc-------------ccccccccccCccHHHHHHHHHHHhhhceeecceeeEEEEcCCccE
Confidence 999999999888876432110 011113458999999999988643 1 11234566
Q ss_pred EEecCCCcccceeecCEEEEcCChhhhhHhhhccCCCCcccCCCCCCCCcceEEEEEEecCCCCCCCCCceEEEecCCCC
Q 018468 225 LCSSNQEKQSLGLSFDAVIMTAPLCNVKEMKITKGGNLFPLDFLPEVIYMPLSVIITTFKKENVRRPLEGFGVLVPSKEQ 304 (355)
Q Consensus 225 V~~~~g~~~~~~~~ad~VI~a~P~~~l~~l~~~~~~~~~~~~~l~~~~~~~v~~v~l~~~~~~~~~~~~g~g~l~~~~~~ 304 (355)
+...+|. .++||.||+|+|++.+.+++ .+ ....+.+.++.+.++++|.+.++++......+++|+++++++
T Consensus 247 ~~~~~g~----~~~~D~VI~t~p~~~l~~ll--~~--~~~~~~~~~~~~~s~~~vv~~~~~~~~~~~~~~~g~~iad~~- 317 (444)
T COG1232 247 IVDVGGE----KITADGVISTAPLPELARLL--GD--EAVSKAAKELQYTSVVTVVVGLDEKDNPALPDGYGLLIADDD- 317 (444)
T ss_pred EEEcCCc----eEEcceEEEcCCHHHHHHHc--CC--cchhhhhhhccccceEEEEEEeccccccCCCCceEEEEecCC-
Confidence 6666765 78999999999999999994 54 556778899999999999999998644445689999999976
Q ss_pred CCCCceEEEEecCCCCCCCCCCCceEEEEEecCCCCccccCCCchHHhhc
Q 018468 305 QNGLKTLGTLFSSMMFPDRVPKDLYLYTTFVGGSRNKELAKASTYKELQS 354 (355)
Q Consensus 305 ~~~~~~~~~~~~s~~~~~~~p~~~~~l~~~~~g~~~~~~~~~sd~e~~~~ 354 (355)
..+.+++|+|++||...|.+++++++++++...+....++|||+++.
T Consensus 318 ---~~~~a~~~~S~~~p~~~p~g~~ll~~~~~~~g~~~~~~~~dee~~~~ 364 (444)
T COG1232 318 ---PYILAITFHSNKWPHEAPEGKTLLRVEFGGPGDESVSTMSDEELVAA 364 (444)
T ss_pred ---CcceeEEEecccCCCCCCCCcEEEEEEeecCCCcchhccCHHHHHHH
Confidence 23999999999999999989999999999999999999999999874
No 3
>TIGR00562 proto_IX_ox protoporphyrinogen oxidase. This protein is a flavoprotein and has a beta-alpha-beta dinucleotide binding motif near the amino end.
Probab=100.00 E-value=2.8e-41 Score=327.02 Aligned_cols=331 Identities=26% Similarity=0.449 Sum_probs=261.2
Q ss_pred CeeecCCCCCceEEEeecCCeEEcccCCeeecCcHHHHHHHHHcCCccccccccCCCceEEEEC-CEEeecCCCchhhhh
Q 018468 1 MVFEADERAGGKLRSISKDGLIWDEGANTMTESEMEVKGLLDDLGIREKQQFPISQYKRYVVRN-GVPFLIPTNPIALLT 79 (355)
Q Consensus 1 ~vlEA~drvGGri~T~~~~g~~~d~G~~~~~~~~~~~~~l~~~lGl~~~~~~~~~~~~~~i~~~-g~~~~~p~~~~~~l~ 79 (355)
+||||++|+|||++|.+.+|+++|+|+|+|++.++++++++++||++..... ...+..+++.+ |+++++|.++..+++
T Consensus 33 ~vlE~~~r~GG~~~t~~~~g~~~e~G~~~~~~~~~~~~~l~~~lgl~~~~~~-~~~~~~~~~~~~g~~~~~p~~~~~~~~ 111 (462)
T TIGR00562 33 TLVEASDRVGGKIQTVKEDGYLIERGPDSFLERKKSAPDLVKDLGLEHVLVS-DATGQRYVLVNRGKLMPVPTKIAPFVK 111 (462)
T ss_pred EEEEcCCcCcceEEEEeeCCEEEecCccccccCChHHHHHHHHcCCCccccc-CCCCceEEEECCCceecCCCChHHHhc
Confidence 5899999999999999999999999999999989999999999999876543 23345777776 899999987777777
Q ss_pred cccCChhHHHHHhcccccccCCCcccccCCCCCCCHHHHHHHhhcHHHHHHHhhhhhhccccCCcccchHHhhchHHHHH
Q 018468 80 SNFLSAQSKFQIILEPFLWKKSDSAKVSAEDAKESVGGFFQRHFGREVVDFLIDPFVAGTSAGDPESLVMRHSFPELWNL 159 (355)
Q Consensus 80 ~~~ls~~~~~~~~~~~~~~~~~~~~~~~~~~~~~sv~~~l~~~~~~~~~~~~~~p~~~~~~~~~~~~lS~~~~l~~l~~~ 159 (355)
..++++.+++++....+... ....|+||++|+++++++++.+++++|++.++|+++++++|+.++++.++..
T Consensus 112 ~~~~~~~~~~~~~~~~~~~~--------~~~~d~s~~e~l~~~~g~~~~~~~~~p~~~~~~~~~~~~ls~~~~~~~~~~~ 183 (462)
T TIGR00562 112 TGLFSLGGKLRAGMDFIRPA--------SPGKDESVEEFVRRRFGDEVVENLIEPLLSGIYAGDPSKLSLKSTFPKFYQT 183 (462)
T ss_pred CCCCCchhhHHhhhhhccCC--------CCCCCcCHHHHHHHhcCHHHHHHHHHHHhcccccCCHHHhhHHHHhHHHHHH
Confidence 77888888887665444211 1234699999999999999999999999999999999999999999999988
Q ss_pred HHhhCchHHHHHHhhhhhhhhhhhhhcCchhhhcCCcceeEeCcchhhHHhhcccc--------C------cccCCCeEE
Q 018468 160 EKRYGSVIAGAIKSKFSARKEKSAEAKGSSEKKRRQRGSFSFLGGMQVLSLSYSHD--------G------RSALENWSL 225 (355)
Q Consensus 160 ~~~~gs~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~gG~~~l~~~l~~~--------~------~~~~~~~~V 225 (355)
++.+++++.++.......... ....+ . .......++++||+++|+++++.. + .+..++|.|
T Consensus 184 ~~~~~s~~~~~~~~~~~~~~~---~~~~~-~-~~~~~~~~~~~gG~~~l~~~l~~~l~~~~i~~~~~V~~I~~~~~~~~v 258 (462)
T TIGR00562 184 EQKHGSLILGMKKTRNLPQGS---GLQLT-A-KKQGQDFQTLATGLETLPEEIEKRLKLTKVYKGTKVTKLSHRGSNYTL 258 (462)
T ss_pred HHhcCcHHHHHHhhcccCccc---ccccc-c-cccCCceEecchhHHHHHHHHHHHhccCeEEcCCeEEEEEecCCcEEE
Confidence 888888877763221000000 00000 0 011112568999999999876421 1 123456788
Q ss_pred EecCCCcccceeecCEEEEcCChhhhhHhhhccCCCCcccCCCCCCCCcceEEEEEEecCCCCCCCCCceEEEecCCCCC
Q 018468 226 CSSNQEKQSLGLSFDAVIMTAPLCNVKEMKITKGGNLFPLDFLPEVIYMPLSVIITTFKKENVRRPLEGFGVLVPSKEQQ 305 (355)
Q Consensus 226 ~~~~g~~~~~~~~ad~VI~a~P~~~l~~l~~~~~~~~~~~~~l~~~~~~~v~~v~l~~~~~~~~~~~~g~g~l~~~~~~~ 305 (355)
++.+|+ ++.||+||+|+|++.+..| +++.+++..+++++++|.++.+|.+.|++++|..+..++|+++|+.+
T Consensus 259 ~~~~g~----~~~ad~VI~t~P~~~~~~l--l~~~~~~~~~~l~~l~~~~~~~v~l~~~~~~~~~~~~~~g~l~~~~~-- 330 (462)
T TIGR00562 259 ELDNGV----TVETDSVVVTAPHKAAAGL--LSELSNSASSHLDKIHSPPVANVNLGFPEGSVDGELEGFGFLISRSS-- 330 (462)
T ss_pred EECCCc----EEEcCEEEECCCHHHHHHH--hcccCHHHHHHHhcCCCCceEEEEEEEchHHcCCCCCceEEEccCCC--
Confidence 877764 8899999999999999998 46566667788999999999999999998877655678999998765
Q ss_pred CCCceEEEEecCCCCCCCCCCCceEEEEEecCCCCccccCCCchHHhhc
Q 018468 306 NGLKTLGTLFSSMMFPDRVPKDLYLYTTFVGGSRNKELAKASTYKELQS 354 (355)
Q Consensus 306 ~~~~~~~~~~~s~~~~~~~p~~~~~l~~~~~g~~~~~~~~~sd~e~~~~ 354 (355)
...+++++|+|+++|.+.|++.+++++|++|..+.++.+++|+|+++.
T Consensus 331 -~~~~~~~i~~s~~~p~~~p~g~~~l~~~~~g~~~~~~~~~~~ee~~~~ 378 (462)
T TIGR00562 331 -KFAILGCIFTSKLFPNRAPPGKTLLTAYIGGATDESIVDLSENEIINI 378 (462)
T ss_pred -CCceEEEEEEccccCCcCCCCcEEEEEEeCCCCCccccCCCHHHHHHH
Confidence 356899999999999888888889999999988899999999998764
No 4
>PLN02576 protoporphyrinogen oxidase
Probab=100.00 E-value=1.4e-40 Score=324.65 Aligned_cols=341 Identities=43% Similarity=0.704 Sum_probs=265.6
Q ss_pred CeeecCCCCCceEEEeecCCeEEcccCCeeecCcHHHHHHHHHcCCccccccccCCCceEEEECCEEeecCCCchhhhhc
Q 018468 1 MVFEADERAGGKLRSISKDGLIWDEGANTMTESEMEVKGLLDDLGIREKQQFPISQYKRYVVRNGVPFLIPTNPIALLTS 80 (355)
Q Consensus 1 ~vlEA~drvGGri~T~~~~g~~~d~G~~~~~~~~~~~~~l~~~lGl~~~~~~~~~~~~~~i~~~g~~~~~p~~~~~~l~~ 80 (355)
+||||++|+|||++|.+.+|+++|.|+|++...++.+..++++ |+.+.+++.......|++.+|+++++|.++..++..
T Consensus 40 ~vlEa~~rvGGr~~t~~~~g~~~d~G~~~~~~~~~~~~~l~~~-gl~~~~~~~~~~~~~~~~~~g~~~~~p~~~~~~~~~ 118 (496)
T PLN02576 40 LVTEARDRVGGNITSVSEDGFIWEEGPNSFQPSDPELTSAVDS-GLRDDLVFPDPQAPRYVVWNGKLRPLPSNPIDLPTF 118 (496)
T ss_pred EEEecCCCCCCceeEeccCCeEEecCCchhccCcHHHHHHHHc-CChhheecCCCCceEEEEECCEEEEcCCChHHhcCc
Confidence 5899999999999999999999999999999888989888888 998776554434457888899999999887777777
Q ss_pred ccCChhHHHHHhcccccccCCCcccccCCCCCCCHHHHHHHhhcHHHHHHHhhhhhhccccCCcccchHHhhchHHHHHH
Q 018468 81 NFLSAQSKFQIILEPFLWKKSDSAKVSAEDAKESVGGFFQRHFGREVVDFLIDPFVAGTSAGDPESLVMRHSFPELWNLE 160 (355)
Q Consensus 81 ~~ls~~~~~~~~~~~~~~~~~~~~~~~~~~~~~sv~~~l~~~~~~~~~~~~~~p~~~~~~~~~~~~lS~~~~l~~l~~~~ 160 (355)
.++++.+|+++....+.+.... ...+++||++|+++++++++++++++|++.++|+++++++|+.+++|.++..|
T Consensus 119 ~~~~~~~~~~~~~~~~~~~~~~-----~~~~~~sv~~~l~~~~g~~~~~~~~~p~~~~~~~~~~~~lS~~~~~~~~~~~e 193 (496)
T PLN02576 119 DLLSAPGKIRAGLGAFGWKRPP-----PPGREESVGEFVRRHLGDEVFERLIDPFVSGVYAGDPSSLSMKAAFPKLWNLE 193 (496)
T ss_pred CcCChhHHHHHhHHHhhccCCC-----CCCCCCcHHHHHHHhcCHHHHHHHHHHHhCceecCCHHHHhHHHHhHHHHHHH
Confidence 8899999998776655432221 23578999999999999999999999999999999999999999999999999
Q ss_pred HhhCchHHHHHHhhhhhhhhhhh-hhcCchhhhcCCcceeEeCcchhhHHhhcccc--------C------cccCCC-eE
Q 018468 161 KRYGSVIAGAIKSKFSARKEKSA-EAKGSSEKKRRQRGSFSFLGGMQVLSLSYSHD--------G------RSALEN-WS 224 (355)
Q Consensus 161 ~~~gs~~~g~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~gG~~~l~~~l~~~--------~------~~~~~~-~~ 224 (355)
+.+|+++.+.+............ .++....+ ......++++|||++|+++++.. + .+..++ |.
T Consensus 194 ~~~gs~~~~~l~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~gG~~~L~~~la~~l~~~~i~l~~~V~~I~~~~~~~~~ 272 (496)
T PLN02576 194 KRGGSIIGGAIKAIQEAKKNPKPEPRDPRLPK-PKGQTVGSFRGGLQTLPDALAKRLGKDKVKLNWKVLSLSKNDDGGYS 272 (496)
T ss_pred HhcCcHHHHHHHhhhhhccccccccccccccc-ccCCeeEeccchHHHHHHHHHHhhCcCcEEcCCEEEEEEECCCCcEE
Confidence 99999888876432110000000 00000000 01123578999999999877521 1 112344 66
Q ss_pred EEecCCCcccceeecCEEEEcCChhhhhHhhhccCCCCcccCCCCCCCCcceEEEEEEecCCCCCC------CCCceEEE
Q 018468 225 LCSSNQEKQSLGLSFDAVIMTAPLCNVKEMKITKGGNLFPLDFLPEVIYMPLSVIITTFKKENVRR------PLEGFGVL 298 (355)
Q Consensus 225 V~~~~g~~~~~~~~ad~VI~a~P~~~l~~l~~~~~~~~~~~~~l~~~~~~~v~~v~l~~~~~~~~~------~~~g~g~l 298 (355)
|++..+. +.+++.||+||+|+|+..+..|+ .+..|+..+++++++|.++.+|++.|++++|.. +..+||++
T Consensus 273 v~~~~~~-g~~~~~ad~VI~a~P~~~l~~ll--~~~~~~~~~~l~~~~~~~~~~v~l~~~~~~~~~~~~~~~~~~~~g~l 349 (496)
T PLN02576 273 LTYDTPE-GKVNVTAKAVVMTAPLYVVSEML--RPKSPAAADALPEFYYPPVAAVTTSYPKEAVKRERLIDGPLEGFGQL 349 (496)
T ss_pred EEEecCC-CceeEEeCEEEECCCHHHHHHHh--cccCHHHHHHhccCCCCceEEEEEEEchHHcccccccCCCCCceEEE
Confidence 6654221 11368999999999999999995 556677788999999999999999999887754 45789999
Q ss_pred ecCCCCCCCCceEEEEecCCCCCCCCCCCceEEEEEecCCCCccccCCCchHHhhc
Q 018468 299 VPSKEQQNGLKTLGTLFSSMMFPDRVPKDLYLYTTFVGGSRNKELAKASTYKELQS 354 (355)
Q Consensus 299 ~~~~~~~~~~~~~~~~~~s~~~~~~~p~~~~~l~~~~~g~~~~~~~~~sd~e~~~~ 354 (355)
+|+.+ +...++++|+|+++|.+.|++..++++|++|..++++.++||+|+++.
T Consensus 350 ~~~~~---~~~~lg~~~~s~~~p~~~~~~~~~l~~~~~~~~~~~~~~~s~ee~~~~ 402 (496)
T PLN02576 350 HPRKQ---GVKTLGTIYSSSLFPDRAPEGRVLLLNYIGGSRNTGIASASEEELVEA 402 (496)
T ss_pred ccCCC---CCceEEEEeecCcCCCCCCCCCEEEEEEECCCCCcccccCCHHHHHHH
Confidence 88765 467899999999999988877788999999999999999999998764
No 5
>PRK12416 protoporphyrinogen oxidase; Provisional
Probab=100.00 E-value=1.6e-39 Score=314.58 Aligned_cols=322 Identities=20% Similarity=0.312 Sum_probs=252.9
Q ss_pred CeeecCCCCCceEEEeecCCeEEcccCCeeecCcHHHHHHHHHcCCccccccccCCCceEEEECCEEeecCC--------
Q 018468 1 MVFEADERAGGKLRSISKDGLIWDEGANTMTESEMEVKGLLDDLGIREKQQFPISQYKRYVVRNGVPFLIPT-------- 72 (355)
Q Consensus 1 ~vlEA~drvGGri~T~~~~g~~~d~G~~~~~~~~~~~~~l~~~lGl~~~~~~~~~~~~~~i~~~g~~~~~p~-------- 72 (355)
+||||++|+|||++|.+.+|+.+|+|+|+++..++++++|+++||+++...+. ..+..|+|.+|+++++|.
T Consensus 34 ~vlEa~~r~GGr~~T~~~~g~~~e~G~~~i~~~~~~~~~l~~~lgl~~~~~~~-~~~~~~~~~~~~~~~~p~~~~~~~p~ 112 (463)
T PRK12416 34 ILVEKEEYLGGKIHSVEEKDFIMESGADSIVARNEHVMPLVKDLNLEEEMVYN-ETGISYIYSDNTLHPIPSDTIFGIPM 112 (463)
T ss_pred EEEecCCCccceEEEEeeCCEEEecCcHHHhcCCHHHHHHHHHcCCccceecC-CCCceEEEECCeEEECCCCCeecCCC
Confidence 58999999999999999999999999999988889999999999998865543 334678888888776643
Q ss_pred CchhhhhcccCChhHHHHHhcccccccCCCcccccCCCCCCCHHHHHHHhhcHHHHHHHhhhhhhccccCCcccchHHhh
Q 018468 73 NPIALLTSNFLSAQSKFQIILEPFLWKKSDSAKVSAEDAKESVGGFFQRHFGREVVDFLIDPFVAGTSAGDPESLVMRHS 152 (355)
Q Consensus 73 ~~~~~l~~~~ls~~~~~~~~~~~~~~~~~~~~~~~~~~~~~sv~~~l~~~~~~~~~~~~~~p~~~~~~~~~~~~lS~~~~ 152 (355)
++..+++..++++.+|++.+.+.+.... ...+++|+++|+++++++++.+++++|++.++|+++++++|+.++
T Consensus 113 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~-------~~~~~~sv~~~l~~~~~~~~~~~~~~p~~~~~~~~~~~~ls~~~~ 185 (463)
T PRK12416 113 SVESLFSSTLVSTKGKIVALKDFITKNK-------EFTKDTSLALFLESFLGKELVERQIAPVLSGVYSGKLNELTMAST 185 (463)
T ss_pred ChHHhhcCCcCCHHHHHHhhhhhccCCC-------CCCCCCCHHHHHHHhcCHHHHHHHHHHHhcccccCCcccccHHHh
Confidence 3445566778888888888877664221 235789999999999999999999999999999999999999999
Q ss_pred chHHHHHHHhhCchHHHHHHhhhhhhhhhhhhhcCchhhhcCCcceeEeCcchhhHHhhcccc--------C------cc
Q 018468 153 FPELWNLEKRYGSVIAGAIKSKFSARKEKSAEAKGSSEKKRRQRGSFSFLGGMQVLSLSYSHD--------G------RS 218 (355)
Q Consensus 153 l~~l~~~~~~~gs~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~gG~~~l~~~l~~~--------~------~~ 218 (355)
++.+...++.+++++.++...... .. .......++++|||++|+++|+.. + .+
T Consensus 186 ~~~~~~~~~~~~s~~~~~~~~~~~----------~~---~~~~~~~~~~~gG~~~l~~~l~~~l~~~~i~~~~~V~~I~~ 252 (463)
T PRK12416 186 LPYLLDYKNKYGSIIKGFEENKKQ----------FQ---SAGNKKFVSFKGGLSTIIDRLEEVLTETVVKKGAVTTAVSK 252 (463)
T ss_pred hHHHHHHHHhcCcHHHHHHHhhhc----------cC---CCCCCceEeeCCCHHHHHHHHHHhcccccEEcCCEEEEEEE
Confidence 999988888889987775432100 00 011223568999999999877532 1 12
Q ss_pred cCCCeEEEecCCCcccceeecCEEEEcCChhhhhHhhhccCCCCcccCCCCCCCCcceEEEEEEecCCCCCCCCCceEEE
Q 018468 219 ALENWSLCSSNQEKQSLGLSFDAVIMTAPLCNVKEMKITKGGNLFPLDFLPEVIYMPLSVIITTFKKENVRRPLEGFGVL 298 (355)
Q Consensus 219 ~~~~~~V~~~~g~~~~~~~~ad~VI~a~P~~~l~~l~~~~~~~~~~~~~l~~~~~~~v~~v~l~~~~~~~~~~~~g~g~l 298 (355)
..++|.|++.+|. ++.||+||+|+|+..+..|+ . .|++...++++.|.++.+|++.|++++|..+.+++|++
T Consensus 253 ~~~~~~v~~~~g~----~~~ad~VI~a~p~~~~~~ll--~--~~~l~~~~~~~~~~~~~~v~l~~~~~~~~~~~~g~G~l 324 (463)
T PRK12416 253 QGDRYEISFANHE----SIQADYVVLAAPHDIAETLL--Q--SNELNEQFHTFKNSSLISIYLGFDILDEQLPADGTGFI 324 (463)
T ss_pred cCCEEEEEECCCC----EEEeCEEEECCCHHHHHhhc--C--CcchhHHHhcCCCCceEEEEEEechhhcCCCCCceEEE
Confidence 3456777776764 78999999999999999985 2 24556677889999999999999977654345789999
Q ss_pred ecCCCCCCCCceEEEEecCCCCCCCCCCCceEEEEEec--CCCCccccCCCchHHhhc
Q 018468 299 VPSKEQQNGLKTLGTLFSSMMFPDRVPKDLYLYTTFVG--GSRNKELAKASTYKELQS 354 (355)
Q Consensus 299 ~~~~~~~~~~~~~~~~~~s~~~~~~~p~~~~~l~~~~~--g~~~~~~~~~sd~e~~~~ 354 (355)
+|+.+ +..+.++.|.|++|+.+.|++..+++++++ ++.++++.+++|+|+++.
T Consensus 325 ~~~~~---~~~~~~~~~~s~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~dee~~~~ 379 (463)
T PRK12416 325 VTENS---DLHCDACTWTSRKWKHTSGKQKLLVRMFYKSTNPVYETIKNYSEEELVRV 379 (463)
T ss_pred eeCCC---CCeEEEEEeecCCCCCcCCCCeEEEEEEeCCCCCCchhhhcCCHHHHHHH
Confidence 99776 456788999999999877766677777886 467888999999998653
No 6
>PRK11883 protoporphyrinogen oxidase; Reviewed
Probab=100.00 E-value=7.5e-34 Score=274.28 Aligned_cols=321 Identities=23% Similarity=0.394 Sum_probs=238.1
Q ss_pred CeeecCCCCCceEEEeecCCeEEcccCCeeecCcHHHHHHHHHcCCccccccccCCCceEEEECCEEeecCCC-------
Q 018468 1 MVFEADERAGGKLRSISKDGLIWDEGANTMTESEMEVKGLLDDLGIREKQQFPISQYKRYVVRNGVPFLIPTN------- 73 (355)
Q Consensus 1 ~vlEA~drvGGri~T~~~~g~~~d~G~~~~~~~~~~~~~l~~~lGl~~~~~~~~~~~~~~i~~~g~~~~~p~~------- 73 (355)
+||||++|+|||++|.+.+|+++|+|+|+|+..++++++++++||+........ .+..+++.+|+++.+|..
T Consensus 29 ~vlEa~~~~GGr~~t~~~~g~~~d~G~~~~~~~~~~~~~l~~~lgl~~~~~~~~-~~~~~~~~~g~~~~~p~~~~~~~~~ 107 (451)
T PRK11883 29 TLLEASDRLGGKIQTVRKDGFPIELGPESFLARKPSAPALVKELGLEDELVANT-TGQSYIYVNGKLHPIPPGTVMGIPT 107 (451)
T ss_pred EEEEcCCCCcceEEEEeeCCeEEecChHHhcCCcHHHHHHHHHcCCccceecCC-CCcceEEECCeEEECCCCCeeccCC
Confidence 589999999999999999999999999998888888999999999987544322 245678889988777642
Q ss_pred -chhhhhcccCChhHHHHHhcccccccCCCcccccCCCCCCCHHHHHHHhhcHHHHHHHhhhhhhccccCCcccchHHhh
Q 018468 74 -PIALLTSNFLSAQSKFQIILEPFLWKKSDSAKVSAEDAKESVGGFFQRHFGREVVDFLIDPFVAGTSAGDPESLVMRHS 152 (355)
Q Consensus 74 -~~~~l~~~~ls~~~~~~~~~~~~~~~~~~~~~~~~~~~~~sv~~~l~~~~~~~~~~~~~~p~~~~~~~~~~~~lS~~~~ 152 (355)
...++..++++..+++++..+... .. ....+++|+++|+.+++++...+.++.|++.++|+++++++|+.++
T Consensus 108 ~~~~~~~~~~~~~~~~~~~~~~~~~---~~----~~~~~~~s~~e~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~ 180 (451)
T PRK11883 108 SIAPFLFAGLVSPIGKLRAAADLRP---PR----WKPGQDQSVGAFFRRRFGDEVVENLIEPLLSGIYAGDIDTLSLRAT 180 (451)
T ss_pred CchhhhcCCCCCHHHHHHhhCcccC---CC----CCCCCCcCHHHHHHHhccHHHHHHHHHHhhceeecCChHHccHHHh
Confidence 112222355665556655443311 10 0235689999999999999999999999999999999999999998
Q ss_pred chHHHHHHHhhCchHHHHHHhhhhhhhhhhhhhcCchhhhcCCcceeEeCcchhhHHhhcccc--------C------cc
Q 018468 153 FPELWNLEKRYGSVIAGAIKSKFSARKEKSAEAKGSSEKKRRQRGSFSFLGGMQVLSLSYSHD--------G------RS 218 (355)
Q Consensus 153 l~~l~~~~~~~gs~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~gG~~~l~~~l~~~--------~------~~ 218 (355)
++.+...+..+++++.++.......+ .......+.++|||++|.++++.. + ..
T Consensus 181 ~~~~~~~~~~~~~~~~~~~~~~~~~~-------------~~~~~~~~~~~~G~~~l~~~l~~~l~~~~i~~~~~V~~i~~ 247 (451)
T PRK11883 181 FPQLAQAEDKYGSLLRGMRKALPKEK-------------KKTKGVFGTLKGGLQSLIEALEEKLPAGTIHKGTPVTKIDK 247 (451)
T ss_pred HHHHHHHHHhcCcHHHHHHhhccccC-------------CCCCCceEeeccHHHHHHHHHHHhCcCCeEEeCCEEEEEEE
Confidence 88877666667777555443210000 001113458999999999876421 1 11
Q ss_pred cCCCeEEEecCCCcccceeecCEEEEcCChhhhhHhhhccCCCCcccCCCCCCCCcceEEEEEEecCCCCCCCCCceEEE
Q 018468 219 ALENWSLCSSNQEKQSLGLSFDAVIMTAPLCNVKEMKITKGGNLFPLDFLPEVIYMPLSVIITTFKKENVRRPLEGFGVL 298 (355)
Q Consensus 219 ~~~~~~V~~~~g~~~~~~~~ad~VI~a~P~~~l~~l~~~~~~~~~~~~~l~~~~~~~v~~v~l~~~~~~~~~~~~g~g~l 298 (355)
..++|.|++.+|+ ++.||+||+|+|+..+.+++ . .|...+++++++|.++.+|++.|+++++ ....++|++
T Consensus 248 ~~~~~~v~~~~g~----~~~~d~vI~a~p~~~~~~l~--~--~~~~~~~~~~~~~~~~~~v~l~~~~~~~-~~~~~~~~~ 318 (451)
T PRK11883 248 SGDGYEIVLSNGG----EIEADAVIVAVPHPVLPSLF--V--APPAFALFKTIPSTSVATVALAFPESAT-NLPDGTGFL 318 (451)
T ss_pred cCCeEEEEECCCC----EEEcCEEEECCCHHHHHHhc--c--ChhHHHHHhCCCCCceEEEEEEeccccC-CCCCceEEE
Confidence 2356777777775 78999999999999999995 3 2445677889999999999999998752 234568888
Q ss_pred ecCCCCCCCCceEEEEecCCCCCCCCCCCceEEEEEecCCCCccccCCCchHHhhc
Q 018468 299 VPSKEQQNGLKTLGTLFSSMMFPDRVPKDLYLYTTFVGGSRNKELAKASTYKELQS 354 (355)
Q Consensus 299 ~~~~~~~~~~~~~~~~~~s~~~~~~~p~~~~~l~~~~~g~~~~~~~~~sd~e~~~~ 354 (355)
++..+ +.++.+++|+++++|...|++..++.++.++..++.+.+++|+|+++.
T Consensus 319 ~~~~~---~~~~~~~~~~s~~~~~~~p~g~~~~~~~~~~~~~~~~~~~~~~~~~~~ 371 (451)
T PRK11883 319 VARNS---DYTITACTWTSKKWPHTTPEGKVLLRLYVGRPGDEAVVDATDEELVAF 371 (451)
T ss_pred ecCCC---CCcEEEEEeEcCcCCCCCCCCcEEEEEecCCCCCchhccCCHHHHHHH
Confidence 87544 456788999999888888877777777777666666788999998764
No 7
>PRK07208 hypothetical protein; Provisional
Probab=99.95 E-value=1.6e-26 Score=224.87 Aligned_cols=328 Identities=13% Similarity=0.046 Sum_probs=203.2
Q ss_pred CeeecCCCCCceEEEeecCCeEEcccCCeeecCcHHHHHHHHHcCCccccccccCCCceEEEECCEEeecCCCchhhhhc
Q 018468 1 MVFEADERAGGKLRSISKDGLIWDEGANTMTESEMEVKGLLDDLGIREKQQFPISQYKRYVVRNGVPFLIPTNPIALLTS 80 (355)
Q Consensus 1 ~vlEA~drvGGri~T~~~~g~~~d~G~~~~~~~~~~~~~l~~~lGl~~~~~~~~~~~~~~i~~~g~~~~~p~~~~~~l~~ 80 (355)
+||||++|+||+++|.+.+|+++|.|+|++...++++++|+++||+...... .....+++++|+++.+|.+....+
T Consensus 31 ~v~E~~~~~GG~~~s~~~~g~~~d~G~h~~~~~~~~~~~l~~~l~~~~~~~~--~~~~~~~~~~g~~~~~p~~~~~~l-- 106 (479)
T PRK07208 31 TVLEADPVVGGISRTVTYKGNRFDIGGHRFFSKSPEVMDLWNEILPDDDFLL--RPRLSRIYYRGKFFDYPLKAFDAL-- 106 (479)
T ss_pred EEEecCCCCCceeeeeccCCceEccCCceeccCCHHHHHHHHHhcCCCcccc--ccccceEEECCEEecCCcchhHHH--
Confidence 5899999999999999999999999999999889999999999997443332 223566788999888886644444
Q ss_pred ccCChhHHHHHhcccccccCCCcccccCCCCCCCHHHHHHHhhcHHHHHHHhhhhhhccccCCcccchHHhhchHHHHHH
Q 018468 81 NFLSAQSKFQIILEPFLWKKSDSAKVSAEDAKESVGGFFQRHFGREVVDFLIDPFVAGTSAGDPESLVMRHSFPELWNLE 160 (355)
Q Consensus 81 ~~ls~~~~~~~~~~~~~~~~~~~~~~~~~~~~~sv~~~l~~~~~~~~~~~~~~p~~~~~~~~~~~~lS~~~~l~~l~~~~ 160 (355)
..+++..+++++.+.+..... ...+++|+++|+.+++|+++.+++++|++.++|+++++++|+.++++.+.
T Consensus 107 ~~~~~~~~~~~~~~~~~~~~~------~~~~~~s~~e~l~~~~g~~~~~~~~~p~~~~~~~~~~~~~s~~~~~~~~~--- 177 (479)
T PRK07208 107 KNLGLWRTAKCGASYLKARLR------PRKEEDSFEDWVINRFGRRLYSTFFKGYTEKVWGVPCDEISADWAAQRIK--- 177 (479)
T ss_pred HhCCHhHHHHHHHHHHHHhcC------CCCCCCCHHHHHHHhhCHHHHHHHHHHhhhhhhCCChHHCCChHHhCccc---
Confidence 234555555555544321111 12468999999999999999999999999999999999999998876542
Q ss_pred HhhCchHHHHHHhhhhhhhhhhhhhcCchhhhcCCcceeEeCcchhhHHhhcccc----C------c------ccCCCeE
Q 018468 161 KRYGSVIAGAIKSKFSARKEKSAEAKGSSEKKRRQRGSFSFLGGMQVLSLSYSHD----G------R------SALENWS 224 (355)
Q Consensus 161 ~~~gs~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~gG~~~l~~~l~~~----~------~------~~~~~~~ 224 (355)
.+++ .+.+........... ................++||+++|.++++.. + . .+.+++.
T Consensus 178 --~~~~-~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~p~gG~~~l~~~L~~~l~~~g~~i~~~~~V~~I~~~~~~~v 252 (479)
T PRK07208 178 --GLSL-GKAIRNALRRSLGLK--RRNKEVETSLIEEFRYPKLGPGQLWETAAEKLEALGGKVVLNAKVVGLHHDGDGRI 252 (479)
T ss_pred --CCCH-HHHHHHHhhhccccc--ccCCCccccceeEEeCCCCCcchHHHHHHHHHHHcCCEEEeCCEEEEEEEcCCcEE
Confidence 1232 212111000000000 0000000000112346799999999876421 1 1 1223332
Q ss_pred --EEecCCCcccceeecCEEEEcCChhhhhHhhhccCCCCcccCCCCCCCCcceEEEEEEecCCCCCCCCCceEEEecCC
Q 018468 225 --LCSSNQEKQSLGLSFDAVIMTAPLCNVKEMKITKGGNLFPLDFLPEVIYMPLSVIITTFKKENVRRPLEGFGVLVPSK 302 (355)
Q Consensus 225 --V~~~~g~~~~~~~~ad~VI~a~P~~~l~~l~~~~~~~~~~~~~l~~~~~~~v~~v~l~~~~~~~~~~~~g~g~l~~~~ 302 (355)
++..+..+....+.||+||+|+|+..+.+++ .++.+++..+++++++|.++.+|++.|+++... ...+.++ +..
T Consensus 253 ~~~~~~~~~g~~~~~~ad~VI~a~p~~~l~~~l-~~~~~~~~~~~~~~l~~~~~~~v~l~~~~~~~~--~~~~~~~-~~~ 328 (479)
T PRK07208 253 AVVVVNDTDGTEETVTADQVISSMPLRELVAAL-DPPPPPEVRAAAAGLRYRDFITVGLLVKELNLF--PDNWIYI-HDP 328 (479)
T ss_pred EEEEEEcCCCCEEEEEcCEEEECCCHHHHHHhc-CCCCCHHHHHHHhCCCcceeEEEEEEecCCCCC--CCceEEe-cCC
Confidence 2222211111258899999999999999885 233444556678889999999999999976432 1223333 322
Q ss_pred CCCCCCceEEEEecCCCCCCCCCCCce-EEEEEecCCCCccccCCCchHHhhc
Q 018468 303 EQQNGLKTLGTLFSSMMFPDRVPKDLY-LYTTFVGGSRNKELAKASTYKELQS 354 (355)
Q Consensus 303 ~~~~~~~~~~~~~~s~~~~~~~p~~~~-~l~~~~~g~~~~~~~~~sd~e~~~~ 354 (355)
. ..+..+...++..|...|++.+ .+.+-+.-...+++.+++|+|+++.
T Consensus 329 ~----~~~~r~~~~~~~~~~~~p~g~~~~l~~~~~~~~~~~~~~~~deel~~~ 377 (479)
T PRK07208 329 D----VKVGRLQNFNNWSPYLVPDGRDTWLGLEYFCFEGDDLWNMSDEDLIAL 377 (479)
T ss_pred C----CccceecccccCCcccCCCCCceEEEEEEEccCCCccccCCHHHHHHH
Confidence 1 1122222223323445566553 3322121133456789999998764
No 8
>TIGR03467 HpnE squalene-associated FAD-dependent desaturase. The sequences in this family are members of the pfam01593 superfamily of flavin-containing amine oxidases which include the phytoene desaturases. These sequences also include a FAD-dependent oxidoreductase domain, pfam01266. The genes of the family modeled here are generally in the same locus with genes involved in the biosynthesis and elaboration of squalene, the condensation product of the polyisoprenoid farnesyl pyrophosphate. This gene and its association with hopene biosynthesis in Zymomonas mobilis has been noted in the literature where the gene symbol hpnE was assigned. This gene is also found in contexts where the downstream conversion of squalene to hopenes is not evidence. The precise nature of the reaction catalyzed by this enzyme is unknown at this time.
Probab=99.95 E-value=2.2e-26 Score=219.95 Aligned_cols=296 Identities=17% Similarity=0.191 Sum_probs=195.0
Q ss_pred CeeecCCCCCceEEEeecCCe--EEcccCCeeecCcHHHHHHHHHcCCccccccccCCCceEEEECCEE--e---ecCC-
Q 018468 1 MVFEADERAGGKLRSISKDGL--IWDEGANTMTESEMEVKGLLDDLGIREKQQFPISQYKRYVVRNGVP--F---LIPT- 72 (355)
Q Consensus 1 ~vlEA~drvGGri~T~~~~g~--~~d~G~~~~~~~~~~~~~l~~~lGl~~~~~~~~~~~~~~i~~~g~~--~---~~p~- 72 (355)
+||||++|+|||++|.+.+|+ ++|.|+|++.+.++++++++++||+.....++. ....+...++.. . ++|.
T Consensus 14 ~vlEa~~~~GG~~~t~~~~g~~~~~d~G~~~~~~~~~~~~~l~~~lgl~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~p 92 (419)
T TIGR03467 14 TLFEARPRLGGRARSFEDGGLGQTIDNGQHVLLGAYTNLLALLRRIGAEPRLQGPR-LPLPFYDPGGRLSRLRLSRLPAP 92 (419)
T ss_pred EEEecCCCCCCceeEeecCCCCcceecCCEEEEcccHHHHHHHHHhCCchhhhccc-CCcceecCCCCceeecCCCCCCC
Confidence 589999999999999998865 499999999888999999999999987644321 111221113332 1 1222
Q ss_pred -Cc-hhhhhcccCChhHHHHHhcccccccCCCcccccCCCCCCCHHHHHHHhh-cHHHHHHHhhhhhhccccCCcccchH
Q 018468 73 -NP-IALLTSNFLSAQSKFQIILEPFLWKKSDSAKVSAEDAKESVGGFFQRHF-GREVVDFLIDPFVAGTSAGDPESLVM 149 (355)
Q Consensus 73 -~~-~~~l~~~~ls~~~~~~~~~~~~~~~~~~~~~~~~~~~~~sv~~~l~~~~-~~~~~~~~~~p~~~~~~~~~~~~lS~ 149 (355)
.. ..++..+.+++.++.++...+........ ...+++|+++|+++++ ++++.+.+++|++.++|+++++++|+
T Consensus 93 ~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~----~~~~~~s~~~~l~~~~~~~~~~~~~~~p~~~~~~~~~~~~~s~ 168 (419)
T TIGR03467 93 LHLARGLLRAPGLSWADKLALARALLALRRTRF----RALDDTTVGDWLQAAGQSERLIERLWEPLLLSALNTPPERASA 168 (419)
T ss_pred HHHHHHHhcCCCCCHHHHHHHHHHHHHHHhcCc----cccCCCCHHHHHHHcCCCHHHHHHHHHHHHHHHcCCCHHHHHH
Confidence 11 23345567888888776554322111110 2467899999999874 88999999999999999999999999
Q ss_pred HhhchHHHHHHHhhCchHHHHHHhhhhhhhhhhhhhcCchhhhcCCcceeEeCcchhhHHhh-ccc----c------C--
Q 018468 150 RHSFPELWNLEKRYGSVIAGAIKSKFSARKEKSAEAKGSSEKKRRQRGSFSFLGGMQVLSLS-YSH----D------G-- 216 (355)
Q Consensus 150 ~~~l~~l~~~~~~~gs~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~gG~~~l~~~-l~~----~------~-- 216 (355)
.++++.+.. ++... ......+.++||++++... ++. . +
T Consensus 169 ~~~~~~~~~----------~~~~~-------------------~~~~~~~~~~gG~~~~~~~~l~~~l~~~g~~i~~~~~ 219 (419)
T TIGR03467 169 ALAAKVLRD----------SFLAG-------------------RAASDLLLPRVPLSELFPEPARRWLDSRGGEVRLGTR 219 (419)
T ss_pred HHHHHHHHH----------HHhcC-------------------CCcceeeeeCCCHHHHHHHHHHHHHHHcCCEEEcCCe
Confidence 888665432 11000 0111356788998876533 321 1 1
Q ss_pred ----cccCCCeEEEe-cCCCcccceeecCEEEEcCChhhhhHhhhccCCCCcccCCCCCCCCcceEEEEEEecCCCCCCC
Q 018468 217 ----RSALENWSLCS-SNQEKQSLGLSFDAVIMTAPLCNVKEMKITKGGNLFPLDFLPEVIYMPLSVIITTFKKENVRRP 291 (355)
Q Consensus 217 ----~~~~~~~~V~~-~~g~~~~~~~~ad~VI~a~P~~~l~~l~~~~~~~~~~~~~l~~~~~~~v~~v~l~~~~~~~~~~ 291 (355)
....+++++.+ .+|. ++.||+||+|+|+.++.+|+ ++ ++..+.+++++|.++.+|++.|++++|. +
T Consensus 220 V~~i~~~~~~~~~~~~~~g~----~~~~d~vi~a~p~~~~~~ll--~~--~~~~~~l~~~~~~~~~~v~l~~~~~~~~-~ 290 (419)
T TIGR03467 220 VRSIEANAGGIRALVLSGGE----TLPADAVVLAVPPRHAASLL--PG--EDLGALLTALGYSPITTVHLRLDRAVRL-P 290 (419)
T ss_pred eeEEEEcCCcceEEEecCCc----cccCCEEEEcCCHHHHHHhC--CC--chHHHHHhhcCCcceEEEEEEeCCCcCC-C
Confidence 11234455443 2443 78999999999999999984 42 2456678899999999999999998864 2
Q ss_pred CCceEEEecCCCCCCCCceEEEEecCCCCCCCCCCCceEEEEEecCCCCccccCCCchHHhhc
Q 018468 292 LEGFGVLVPSKEQQNGLKTLGTLFSSMMFPDRVPKDLYLYTTFVGGSRNKELAKASTYKELQS 354 (355)
Q Consensus 292 ~~g~g~l~~~~~~~~~~~~~~~~~~s~~~~~~~p~~~~~l~~~~~g~~~~~~~~~sd~e~~~~ 354 (355)
...++++.+ ...++++.+. ..+ ...++++++++ ++++.+++++|+++.
T Consensus 291 ~~~~~~~~~---------~~~~~~~~~~---~~~-~~~~~~~~~~~--~~~~~~~~~e~~~~~ 338 (419)
T TIGR03467 291 APMVGLVGG---------LAQWLFDRGQ---LAG-EPGYLAVVISA--ARDLVDLPREELADR 338 (419)
T ss_pred CCeeeecCC---------ceeEEEECCc---CCC-CCCEEEEEEec--chhhccCCHHHHHHH
Confidence 234454311 2235554221 112 23567777765 467889999998764
No 9
>PRK07233 hypothetical protein; Provisional
Probab=99.94 E-value=1.4e-25 Score=215.63 Aligned_cols=305 Identities=19% Similarity=0.195 Sum_probs=206.7
Q ss_pred CeeecCCCCCceEEEeecCCeEEcccCCeeecCcHHHHHHHHHcCCccccccccCCCceEEEECCEEeecCCCchhhhhc
Q 018468 1 MVFEADERAGGKLRSISKDGLIWDEGANTMTESEMEVKGLLDDLGIREKQQFPISQYKRYVVRNGVPFLIPTNPIALLTS 80 (355)
Q Consensus 1 ~vlEA~drvGGri~T~~~~g~~~d~G~~~~~~~~~~~~~l~~~lGl~~~~~~~~~~~~~~i~~~g~~~~~p~~~~~~l~~ 80 (355)
+|||+++|+|||++|.+.+|+.+|.|+|++...++++.+++++||+.....+.. ....++.+|+.++++ ++..++++
T Consensus 26 ~vlE~~~~~GG~~~s~~~~g~~~d~g~~~~~~~~~~~~~l~~~lg~~~~~~~~~--~~~~~~~~~~~~~~~-~~~~~~~~ 102 (434)
T PRK07233 26 TVFEADDQLGGLAASFEFGGLPIERFYHHIFKSDEALLELLDELGLEDKLRWRE--TKTGYYVDGKLYPLG-TPLELLRF 102 (434)
T ss_pred EEEEeCCCCCCceeeeccCCcchhhhhhhhccccHHHHHHHHHcCCCCceeecc--CceEEEECCeEecCC-CHHHHHcC
Confidence 589999999999999999999999999998888999999999999987544422 223345677766553 33444555
Q ss_pred ccCChhHHHHHhcccccccCCCcccccCCCCCCCHHHHHHHhhcHHHHHHHhhhhhhccccCCcccchHHhhchHHHHHH
Q 018468 81 NFLSAQSKFQIILEPFLWKKSDSAKVSAEDAKESVGGFFQRHFGREVVDFLIDPFVAGTSAGDPESLVMRHSFPELWNLE 160 (355)
Q Consensus 81 ~~ls~~~~~~~~~~~~~~~~~~~~~~~~~~~~~sv~~~l~~~~~~~~~~~~~~p~~~~~~~~~~~~lS~~~~l~~l~~~~ 160 (355)
+.++..+++++....+....... ....+++|+++|+.++++++..+.+++|++.++|+.+++++|+.++++.+....
T Consensus 103 ~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~s~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~ 179 (434)
T PRK07233 103 PHLSLIDKFRLGLLTLLARRIKD---WRALDKVPAEEWLRRWSGEGVYEVFWEPLLESKFGDYADDVSAAWLWSRIKRRG 179 (434)
T ss_pred CCCCHHHHHHhHHHHHhhhhccc---ccccccccHHHHHHHhcCHHHHHHHHHHHHhcccCCCccccCHHHHHHHHhhhh
Confidence 56666677654433221111000 124568999999999999999999999999999999999999988766553210
Q ss_pred HhhCchHHHHHHhhhhhhhhhhhhhcCchhhhcCCcceeEeCcchhhHHhhcccc----C------------cccCCCeE
Q 018468 161 KRYGSVIAGAIKSKFSARKEKSAEAKGSSEKKRRQRGSFSFLGGMQVLSLSYSHD----G------------RSALENWS 224 (355)
Q Consensus 161 ~~~gs~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~gG~~~l~~~l~~~----~------------~~~~~~~~ 224 (355)
.... . ....+.+.++||+++|.++++.. + ...++++.
T Consensus 180 ---------~~~~------~------------~~~~~~~~~~gG~~~l~~~l~~~l~~~g~~v~~~~~V~~i~~~~~~~~ 232 (434)
T PRK07233 180 ---------NRRY------S------------LFGEKLGYLEGGFATLIDALAEAIEARGGEIRLGTPVTSVVIDGGGVT 232 (434)
T ss_pred ---------cccc------c------------cCCceEeccCCCHHHHHHHHHHHHHhcCceEEeCCCeeEEEEcCCceE
Confidence 0000 0 00112457899999998877421 1 01233444
Q ss_pred EEecCCCcccceeecCEEEEcCChhhhhHhhhccCCCCcccCCCCCCCCcceEEEEEEecCCCCCCCCCceEEEecCCCC
Q 018468 225 LCSSNQEKQSLGLSFDAVIMTAPLCNVKEMKITKGGNLFPLDFLPEVIYMPLSVIITTFKKENVRRPLEGFGVLVPSKEQ 304 (355)
Q Consensus 225 V~~~~g~~~~~~~~ad~VI~a~P~~~l~~l~~~~~~~~~~~~~l~~~~~~~v~~v~l~~~~~~~~~~~~g~g~l~~~~~~ 304 (355)
+...++. +++||+||+|+|+..+.++ +++.+++..+.++++.|.++.++++.|+++... .+...++..
T Consensus 233 ~~~~~~~----~~~ad~vI~a~p~~~~~~l--l~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~----~~~~~~~~~-- 300 (434)
T PRK07233 233 GVEVDGE----EEDFDAVISTAPPPILARL--VPDLPADVLARLRRIDYQGVVCMVLKLRRPLTD----YYWLNINDP-- 300 (434)
T ss_pred EEEeCCc----eEECCEEEECCCHHHHHhh--cCCCcHHHHhhhcccCccceEEEEEEecCCCCC----CceeeecCC--
Confidence 4444543 7899999999999999998 455545556778889999999999999986432 232222221
Q ss_pred CCCCceEEEEecCCCCCCCCCCCceEE--EEEecCCCCccccCCCchHHhhc
Q 018468 305 QNGLKTLGTLFSSMMFPDRVPKDLYLY--TTFVGGSRNKELAKASTYKELQS 354 (355)
Q Consensus 305 ~~~~~~~~~~~~s~~~~~~~p~~~~~l--~~~~~g~~~~~~~~~sd~e~~~~ 354 (355)
+.++.++++.++..+...|++++++ ++++.+.. ++..++++|+++.
T Consensus 301 --~~~~~~~~~~s~~~~~~~~~g~~~~~~~~~~~~~~--~~~~~~~~~~~~~ 348 (434)
T PRK07233 301 --GAPFGGVIEHTNLVPPERYGGEHLVYLPKYLPGDH--PLWQMSDEELLDR 348 (434)
T ss_pred --CCCcceEEEecccCCccccCCceEEEEeeecCCCC--hhhcCCHHHHHHH
Confidence 1346667777776666555455543 44554432 3667888887764
No 10
>PLN02268 probable polyamine oxidase
Probab=99.94 E-value=2.2e-26 Score=221.14 Aligned_cols=285 Identities=14% Similarity=0.134 Sum_probs=184.0
Q ss_pred CeeecCCCCCceEEEeecCCeEEcccCCeeecC--cHHHHHHHHHcCCccccccccCCCceEEEE---------CCEEee
Q 018468 1 MVFEADERAGGKLRSISKDGLIWDEGANTMTES--EMEVKGLLDDLGIREKQQFPISQYKRYVVR---------NGVPFL 69 (355)
Q Consensus 1 ~vlEA~drvGGri~T~~~~g~~~d~G~~~~~~~--~~~~~~l~~~lGl~~~~~~~~~~~~~~i~~---------~g~~~~ 69 (355)
+||||++|+|||++|.+.+|+.+|+||+|+++. ++.+++|+++||++.... .....+++. ++....
T Consensus 27 ~vlEa~~r~GGri~t~~~~g~~~d~G~~~i~~~~~~~~~~~l~~~lgl~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~ 103 (435)
T PLN02268 27 TLLESRDRIGGRVHTDYSFGFPVDMGASWLHGVCNENPLAPLIGRLGLPLYRT---SGDNSVLYDHDLESYALFDMDGNQ 103 (435)
T ss_pred EEEeCCCCCCceeeecCcCCcccCCCCeeEeccCCCchHHHHHHHhCCceEec---cCCccccccccccccceecCCCCC
Confidence 589999999999999988899999999998753 445899999999975321 111222222 222222
Q ss_pred cCCCchhhhhcccCChhHHHHHhcccccccCCCcccccCCCCCCCHHHHHHHh-----------hcHHHHHHHhhhhhhc
Q 018468 70 IPTNPIALLTSNFLSAQSKFQIILEPFLWKKSDSAKVSAEDAKESVGGFFQRH-----------FGREVVDFLIDPFVAG 138 (355)
Q Consensus 70 ~p~~~~~~l~~~~ls~~~~~~~~~~~~~~~~~~~~~~~~~~~~~sv~~~l~~~-----------~~~~~~~~~~~p~~~~ 138 (355)
+|.+....+.. ...++..+...... ...+++|+.+|+.+. +++++.+.++.| +.+
T Consensus 104 ~~~~~~~~~~~------~~~~~~~~~~~~~~-------~~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~ 169 (435)
T PLN02268 104 VPQELVTKVGE------TFERILEETEKVRD-------EHEEDMSLLQAISIVLERHPELRLEGLAHEVLQWYLCR-MEG 169 (435)
T ss_pred CCHHHHHHHHH------HHHHHHHHHHHHHh-------ccCCCcCHHHHHHHHhhhCcccccchHHHHHHHHHHHH-HHH
Confidence 33221111100 01112222211111 235789999987542 456666667777 567
Q ss_pred cccCCcccchHHhhchHHHHHHHhhCchHHHHHHhhhhhhhhhhhhhcCchhhhcCCcceeEeCcchhhHHhhcccc---
Q 018468 139 TSAGDPESLVMRHSFPELWNLEKRYGSVIAGAIKSKFSARKEKSAEAKGSSEKKRRQRGSFSFLGGMQVLSLSYSHD--- 215 (355)
Q Consensus 139 ~~~~~~~~lS~~~~l~~l~~~~~~~gs~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~gG~~~l~~~l~~~--- 215 (355)
+|+++++++|+..+.. + .++. +. ...+.+|+++++++++..
T Consensus 170 ~~~~~~~~ls~~~~~~-----~----~~~~------------------------g~---~~~~~~G~~~l~~~l~~~~~i 213 (435)
T PLN02268 170 WFAADADTISLKSWDQ-----E----ELLE------------------------GG---HGLMVRGYDPVINTLAKGLDI 213 (435)
T ss_pred HhCCChHhCchhhcCC-----c----cccC------------------------CC---ceeecCCHHHHHHHHhccCce
Confidence 8999999999875311 0 0000 01 235889999999887532
Q ss_pred --C------cccCCCeEEEecCCCcccceeecCEEEEcCChhhhhHhh-hccCCCC-cccCCCCCCCCcceEEEEEEecC
Q 018468 216 --G------RSALENWSLCSSNQEKQSLGLSFDAVIMTAPLCNVKEMK-ITKGGNL-FPLDFLPEVIYMPLSVIITTFKK 285 (355)
Q Consensus 216 --~------~~~~~~~~V~~~~g~~~~~~~~ad~VI~a~P~~~l~~l~-~~~~~~~-~~~~~l~~~~~~~v~~v~l~~~~ 285 (355)
+ .+..++|.|++.+|. ++.||+||+|+|+.++++.. .+.|..| .+.++++++.|+++.||.+.|++
T Consensus 214 ~~~~~V~~i~~~~~~v~v~~~~g~----~~~ad~VIva~P~~~l~~~~i~f~p~lp~~~~~ai~~~~~g~~~Kv~l~f~~ 289 (435)
T PLN02268 214 RLNHRVTKIVRRYNGVKVTVEDGT----TFVADAAIIAVPLGVLKANIIKFEPELPEWKEEAISDLGVGIENKIALHFDS 289 (435)
T ss_pred eCCCeeEEEEEcCCcEEEEECCCc----EEEcCEEEEecCHHHHhcCcceecCCCCHHHHHHHHhCCccceeEEEEEeCC
Confidence 1 123567888887775 78999999999999998642 1333333 34578889999999999999999
Q ss_pred CCCCCCCCceEEEecCCCCCCCCceEEEEecCCCCCCCCCCCceEEEEEecCCCCccccCCCchHHhhc
Q 018468 286 ENVRRPLEGFGVLVPSKEQQNGLKTLGTLFSSMMFPDRVPKDLYLYTTFVGGSRNKELAKASTYKELQS 354 (355)
Q Consensus 286 ~~~~~~~~g~g~l~~~~~~~~~~~~~~~~~~s~~~~~~~p~~~~~l~~~~~g~~~~~~~~~sd~e~~~~ 354 (355)
++|+. ...+|++.+... ++.|.++... +.+..+|++|++|..++++.+++|+|+++.
T Consensus 290 ~fw~~-~~~~g~~~~~~~--------~~~~~~~~~~---~~g~~~l~~~~~g~~a~~~~~~~~~e~~~~ 346 (435)
T PLN02268 290 VFWPN-VEFLGVVAPTSY--------GCSYFLNLHK---ATGHPVLVYMPAGRLARDIEKLSDEAAANF 346 (435)
T ss_pred CCCCC-CceeeccCCCCC--------CceEEEeccc---CCCCCEEEEEeccHHHHHHHhCCHHHHHHH
Confidence 99963 345676665432 1222222111 124568899999999999999999998763
No 11
>PLN02568 polyamine oxidase
Probab=99.92 E-value=1.8e-24 Score=210.79 Aligned_cols=329 Identities=14% Similarity=0.119 Sum_probs=198.8
Q ss_pred CeeecCCCCCceEEEeecCCeEEcccCCeeecC-cHHHHHHHHHcCCccccccccC-----CCceEEEECCEEeecCCCc
Q 018468 1 MVFEADERAGGKLRSISKDGLIWDEGANTMTES-EMEVKGLLDDLGIREKQQFPIS-----QYKRYVVRNGVPFLIPTNP 74 (355)
Q Consensus 1 ~vlEA~drvGGri~T~~~~g~~~d~G~~~~~~~-~~~~~~l~~~lGl~~~~~~~~~-----~~~~~i~~~g~~~~~p~~~ 74 (355)
+||||++|+|||++|.+..|+.+|.|++|+++. .+.+.+|++++|+......... ....++-.+|.. ++...
T Consensus 37 ~v~E~~~~~GGr~~t~~~~g~~~d~G~~~~~g~~~~~~~~l~~~~g~~~~~~~~~~~~~~~~~~~~~~~~g~~--~~~~~ 114 (539)
T PLN02568 37 TVVEGGDRIGGRINTSEFGGERIEMGATWIHGIGGSPVYKIAQEAGSLESDEPWECMDGFPDRPKTVAEGGFE--VDPSI 114 (539)
T ss_pred EEEeCCCCcCCeEEEEEeCCeEEecCCceeCCCCCCHHHHHHHHhCCccccCcceecccccccceEEccCCcC--CCHHH
Confidence 589999999999999999999999999999853 5678999999999653211000 011122223432 22111
Q ss_pred hhhhhcccCChhHHHHHhccc-----------cc-ccCCCcccccCCCCCCCHHHHHHHhhcHHHHHHHhhhhhhccccC
Q 018468 75 IALLTSNFLSAQSKFQIILEP-----------FL-WKKSDSAKVSAEDAKESVGGFFQRHFGREVVDFLIDPFVAGTSAG 142 (355)
Q Consensus 75 ~~~l~~~~ls~~~~~~~~~~~-----------~~-~~~~~~~~~~~~~~~~sv~~~l~~~~~~~~~~~~~~p~~~~~~~~ 142 (355)
..-+. .++ ...++..... +. .... .........+.||++|+++++++ ..+.+.+|+..++|+.
T Consensus 115 ~~~~~-~~~--~~~~~~~~~~~~~~~~~~~~d~~~~~~~-~~~~~~~~~~~Sl~~fl~~~l~~-~~~~~~~p~~~~~~~~ 189 (539)
T PLN02568 115 VESIS-TLF--RGLMDDAQGKLIEPSEVDEVDFVKLAAK-AARVCESGGGGSVGSFLRRGLDA-YWDSVSADEQIKGYGG 189 (539)
T ss_pred HHHHH-HHH--HHHHHHhhcccccccccccccccccchh-ccchhccCCCCcHHHHHHHHHHH-HHhhcccchhhccccc
Confidence 10000 000 0000000000 00 0000 00000012356999999999976 7778899999999999
Q ss_pred CcccchHHhhchHHHHHHHhhCchHH-HHHHhhhhhhhhhhhhhcCchhhhcCCcceeEeCcchhhHHhhcccc------
Q 018468 143 DPESLVMRHSFPELWNLEKRYGSVIA-GAIKSKFSARKEKSAEAKGSSEKKRRQRGSFSFLGGMQVLSLSYSHD------ 215 (355)
Q Consensus 143 ~~~~lS~~~~l~~l~~~~~~~gs~~~-g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~gG~~~l~~~l~~~------ 215 (355)
++++++...+++.+..+++.++++.. +.+.... .. .. .......+.++||+++|+++|+..
T Consensus 190 ~~~~~~~~~~~~~~~~~e~~~~~~~~ls~ls~~~---~~------~~---~~~~g~~~~i~gG~~~Li~~La~~L~~~~I 257 (539)
T PLN02568 190 WSRKLLEEAIFTMHENTQRTYTSADDLSTLDLAA---ES------EY---RMFPGEEITIAKGYLSVIEALASVLPPGTI 257 (539)
T ss_pred hhHHHHHHHHHHHHHHhhccccccccHhhccccc---cC------cc---eecCCCeEEECCcHHHHHHHHHhhCCCCEE
Confidence 99999999999988887766655422 2221100 00 00 000112568999999999877531
Q ss_pred --C------cccCCCeEEEecCCCcccceeecCEEEEcCChhhhhH------hhhccCCCCc-ccCCCCCCCCcceEEEE
Q 018468 216 --G------RSALENWSLCSSNQEKQSLGLSFDAVIMTAPLCNVKE------MKITKGGNLF-PLDFLPEVIYMPLSVII 280 (355)
Q Consensus 216 --~------~~~~~~~~V~~~~g~~~~~~~~ad~VI~a~P~~~l~~------l~~~~~~~~~-~~~~l~~~~~~~v~~v~ 280 (355)
+ .+..++|+|++.+|. ++.||+||+|+|+.++++ +. +.|.+|+ +.++++++.|+.+.||+
T Consensus 258 ~ln~~V~~I~~~~~~v~V~~~dG~----~~~aD~VIvTvPl~vL~~~~~~~~i~-F~P~LP~~k~~Ai~~l~~g~~~Ki~ 332 (539)
T PLN02568 258 QLGRKVTRIEWQDEPVKLHFADGS----TMTADHVIVTVSLGVLKAGIGEDSGL-FSPPLPDFKTDAISRLGFGVVNKLF 332 (539)
T ss_pred EeCCeEEEEEEeCCeEEEEEcCCC----EEEcCEEEEcCCHHHHhhccccccce-ecCCCCHHHHHHHHhcCCceeeEEE
Confidence 1 123456888888875 789999999999999996 33 4554454 46789999999999999
Q ss_pred EEecCCCCCCC-----CCceEEEecCCCCCCCCceEEEEecCCCCCCC-CCCCceEEEEEecCCCCccccCCCchHHhhc
Q 018468 281 TTFKKENVRRP-----LEGFGVLVPSKEQQNGLKTLGTLFSSMMFPDR-VPKDLYLYTTFVGGSRNKELAKASTYKELQS 354 (355)
Q Consensus 281 l~~~~~~~~~~-----~~g~g~l~~~~~~~~~~~~~~~~~~s~~~~~~-~p~~~~~l~~~~~g~~~~~~~~~sd~e~~~~ 354 (355)
+.|+++||+.+ ...+.++....... ........|........ ...+..+|.+|++|..+..+..++|+|+++.
T Consensus 333 l~f~~~fW~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~vL~~~~~G~~A~~~e~l~~~~~~~~ 411 (539)
T PLN02568 333 VELSPRPDGSPEDVAKFPFLQMAFHRSDSE-ARHDKIPWWMRRTASICPIHKNSSVLLSWFAGKEALELEKLSDEEIIRG 411 (539)
T ss_pred EEecCCCCCcccccccccceeeeecccchh-hhcccccchhhccccccccCCCCCEEEEEeccHHHHHHHcCCHHHHHHH
Confidence 99999988531 12222322211100 00000011211111100 1124568999999999999999999998764
No 12
>KOG0685 consensus Flavin-containing amine oxidase [Coenzyme transport and metabolism]
Probab=99.91 E-value=5e-24 Score=195.26 Aligned_cols=299 Identities=15% Similarity=0.135 Sum_probs=169.2
Q ss_pred CeeecCCCCCceEEEeecCCeEEcccCCeeec-CcHHHHHHHHHcCCccccccccC--CCceEEEECCEEeecCCCchhh
Q 018468 1 MVFEADERAGGKLRSISKDGLIWDEGANTMTE-SEMEVKGLLDDLGIREKQQFPIS--QYKRYVVRNGVPFLIPTNPIAL 77 (355)
Q Consensus 1 ~vlEA~drvGGri~T~~~~g~~~d~G~~~~~~-~~~~~~~l~~~lGl~~~~~~~~~--~~~~~i~~~g~~~~~p~~~~~~ 77 (355)
+||||+||+||||+|++..+.++|+||+|+++ .++.+++++++.|....+..... ........+|+.+ |......
T Consensus 49 ~IlEa~dRIGGRI~ti~~~d~~ielGAqwihG~~gNpVY~la~~~g~~~~~~~tg~~~~~~~~~~~~g~~V--~~~~~~~ 126 (498)
T KOG0685|consen 49 LILEASDRIGGRIHTIPFADGVIELGAQWIHGEEGNPVYELAKEYGDLKLLEVTGPAYVDNFHTRSNGEVV--PEELLDE 126 (498)
T ss_pred EEEEeccccCceEeeEEcCCCeEeecceeecCCCCChHHHHHHHhCccceeccCCccccceeEEEecCccC--cHHHHHH
Confidence 58999999999999999987799999999998 67889999999982211111110 0111122344332 1111111
Q ss_pred hhcccCChhHHHHHhcccccccCCCcccccCCCCCCCHHHHHHHhhcH----------------HHHHHHhhhhhhcccc
Q 018468 78 LTSNFLSAQSKFQIILEPFLWKKSDSAKVSAEDAKESVGGFFQRHFGR----------------EVVDFLIDPFVAGTSA 141 (355)
Q Consensus 78 l~~~~ls~~~~~~~~~~~~~~~~~~~~~~~~~~~~~sv~~~l~~~~~~----------------~~~~~~~~p~~~~~~~ 141 (355)
+ .+............. -..+.-||++|+...+.. ++.+.++.-.++-..+
T Consensus 127 ~-------~~~~~~~~~~~r~~~-------~~~~~~SvG~~ln~~~~~~~~~~e~~~~~k~l~~~~~~~~~k~e~~~~~~ 192 (498)
T KOG0685|consen 127 L-------NEITVTLSDKLREAE-------IAHDEGSVGEYLNSEFWDELRGPENPEIDKTLAEEILNVYFKVECSITGA 192 (498)
T ss_pred H-------HHHHHhhhhhccccc-------ccCccccHHHHHHHHHHHHhccccccchhhHHHHHHHHHHHHHheeeecc
Confidence 1 000000111110000 123567899988864332 2223333333333334
Q ss_pred CCcccchHHhhchHHHHHHHhhCchHHHHHHhhhhhhhhhhhhhcCchhhhcCCcceeEeCcchhhHHhhcc--------
Q 018468 142 GDPESLVMRHSFPELWNLEKRYGSVIAGAIKSKFSARKEKSAEAKGSSEKKRRQRGSFSFLGGMQVLSLSYS-------- 213 (355)
Q Consensus 142 ~~~~~lS~~~~l~~l~~~~~~~gs~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~gG~~~l~~~l~-------- 213 (355)
.+.+++|.+.+..+- . .-|.. ......-|+..+..-|+
T Consensus 193 d~l~evs~~~~~ey~-~---~~ge~------------------------------~~~~~~kGy~~iL~~l~~~~p~~~i 238 (498)
T KOG0685|consen 193 DNLSEVSLRALLEYT-E---CPGEE------------------------------LLIWNKKGYKRILKLLMAVIPAQNI 238 (498)
T ss_pred Cchhhhhhhhcccee-e---cCchh------------------------------hheechhHHHHHHHHHhccCCCcch
Confidence 455555554432110 0 00100 00011223333322111
Q ss_pred ---------cc------CcccCCCeEEEecCCCcccceeecCEEEEcCChhhhhH----hhhccCCCCcccCCCCCCCCc
Q 018468 214 ---------HD------GRSALENWSLCSSNQEKQSLGLSFDAVIMTAPLCNVKE----MKITKGGNLFPLDFLPEVIYM 274 (355)
Q Consensus 214 ---------~~------~~~~~~~~~V~~~~g~~~~~~~~ad~VI~a~P~~~l~~----l~~~~~~~~~~~~~l~~~~~~ 274 (355)
.. +-+....+.|++.||. .+.|||||||+|+++++. ++ .++++.++.++++++.++
T Consensus 239 ~~~~~~~~~~~~rv~~I~~~~~~~v~l~c~dg~----v~~adhVIvTvsLGvLk~~h~~lF-~P~LP~~K~~AIe~lgfG 313 (498)
T KOG0685|consen 239 ELGLWKRIHLNTRVENINWKNTGEVKLRCSDGE----VFHADHVIVTVSLGVLKEQHHKLF-VPPLPAEKQRAIERLGFG 313 (498)
T ss_pred hcCchhhhcccccceeeccCCCCcEEEEEeCCc----EEeccEEEEEeechhhhhhhhhhc-CCCCCHHHHHHHHhccCC
Confidence 10 1112345889999996 899999999999999998 64 344444556899999999
Q ss_pred ceEEEEEEecCCCCCCCCCceEEEecCCCCCCCCceEEEEecCCCCC-CCCCCCceEEEEEecCCCCccccCCCchHHhh
Q 018468 275 PLSVIITTFKKENVRRPLEGFGVLVPSKEQQNGLKTLGTLFSSMMFP-DRVPKDLYLYTTFVGGSRNKELAKASTYKELQ 353 (355)
Q Consensus 275 ~v~~v~l~~~~~~~~~~~~g~g~l~~~~~~~~~~~~~~~~~~s~~~~-~~~p~~~~~l~~~~~g~~~~~~~~~sd~e~~~ 353 (355)
.+.||+|.|.+++|+.+..++-.|+-+.+.. +.....-.|....+. ...+....+|.+|+.|..++.+.++|||||++
T Consensus 314 tv~KiFLE~E~pfwp~~~~~i~~lw~~e~l~-e~r~~~~~w~~~~~~f~~v~~~~~vL~gWiaG~~~~~me~lsdEev~e 392 (498)
T KOG0685|consen 314 TVNKIFLEFEEPFWPSDWNGIQLLWLDEDLE-ELRSTLDAWEEDIMGFQPVSWAPNVLLGWIAGREARHMETLSDEEVLE 392 (498)
T ss_pred ccceEEEEccCCCCCCCCceeEEEEecCcHH-HHhhhhHHHHhhceEEEEcCcchhhhheeccCCcceehhhCCHHHHHH
Confidence 9999999999999987778876665433200 010000111111110 01111226999999999999999999999988
Q ss_pred cC
Q 018468 354 SL 355 (355)
Q Consensus 354 ~~ 355 (355)
.|
T Consensus 393 ~~ 394 (498)
T KOG0685|consen 393 GL 394 (498)
T ss_pred HH
Confidence 64
No 13
>PLN02612 phytoene desaturase
Probab=99.90 E-value=2.1e-22 Score=198.34 Aligned_cols=304 Identities=15% Similarity=0.156 Sum_probs=190.8
Q ss_pred CeeecCCCCCceEEEeec-CCeEEcccCCeeecCcHHHHHHHHHcCCccccccccCCCceEEEE--CCEEe--e----cC
Q 018468 1 MVFEADERAGGKLRSISK-DGLIWDEGANTMTESEMEVKGLLDDLGIREKQQFPISQYKRYVVR--NGVPF--L----IP 71 (355)
Q Consensus 1 ~vlEA~drvGGri~T~~~-~g~~~d~G~~~~~~~~~~~~~l~~~lGl~~~~~~~~~~~~~~i~~--~g~~~--~----~p 71 (355)
+|||+++++||++.|++. +|+++|.|+|++.+.++++++++++||+.+.+.+... ...+.+. ++++. . +|
T Consensus 120 ~~~e~~~~~gG~~~s~~~~~G~~~D~G~h~~~g~~~~~~~ll~elG~~~~~~~~~~-~~~~~~~~~~~~~~~~~~p~~~P 198 (567)
T PLN02612 120 ILLEARDVLGGKVAAWKDEDGDWYETGLHIFFGAYPNVQNLFGELGINDRLQWKEH-SMIFAMPNKPGEFSRFDFPEVLP 198 (567)
T ss_pred EEEecCCCCCCcceeeEcCCCCEEcCCceEEeCCCchHHHHHHHhCCcccceeccc-ceEEEecCCCCceeeCcCchhcC
Confidence 589999999999999874 7999999999999989999999999999875443221 1222222 23222 2 33
Q ss_pred CC---chhhhh-cccCChhHHHHHhcccccccCCCcccccCCCCCCCHHHHHHHh-hcHHHHHHHhhhhhhccccCCccc
Q 018468 72 TN---PIALLT-SNFLSAQSKFQIILEPFLWKKSDSAKVSAEDAKESVGGFFQRH-FGREVVDFLIDPFVAGTSAGDPES 146 (355)
Q Consensus 72 ~~---~~~~l~-~~~ls~~~~~~~~~~~~~~~~~~~~~~~~~~~~~sv~~~l~~~-~~~~~~~~~~~p~~~~~~~~~~~~ 146 (355)
.. +..+++ ...+++.+|+++.......... ........+++|+.+|+++. +++.+.+.+++|++.++++.++++
T Consensus 199 ~~l~~~~~~l~~~~~ls~~~kl~~~~~~~~~~~~-~~~~~~~~d~~Sv~e~l~~~~~~~~~~~~~~~~l~~~~~~~~p~~ 277 (567)
T PLN02612 199 APLNGIWAILRNNEMLTWPEKIKFAIGLLPAIVG-GQAYVEAQDGLSVKEWMRKQGVPDRVNDEVFIAMSKALNFINPDE 277 (567)
T ss_pred ChhhhhHHHHhcCccCCHHHHHHHHHhhhHHhcc-cchhhhhcCcCcHHHHHHhcCCCHHHHHHHHHHHHHHhcCCCHHH
Confidence 32 334443 3567888888765432210000 00001346789999999984 567888899999999999999999
Q ss_pred chHHhhchHHHHHHH-hhCchHHHHHHhhhhhhhhhhhhhcCchhhhcCCcceeEeCcch-hhHHhhcc----cc-----
Q 018468 147 LVMRHSFPELWNLEK-RYGSVIAGAIKSKFSARKEKSAEAKGSSEKKRRQRGSFSFLGGM-QVLSLSYS----HD----- 215 (355)
Q Consensus 147 lS~~~~l~~l~~~~~-~~gs~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~gG~-~~l~~~l~----~~----- 215 (355)
+|+.++++.+..+.+ .+++ ....+.|+. +.|...+. ..
T Consensus 278 ~S~~~~l~~l~~~l~~~~gs-------------------------------~~~~~~G~~~~~l~~~l~~~l~~~G~~I~ 326 (567)
T PLN02612 278 LSMQCILIALNRFLQEKHGS-------------------------------KMAFLDGNPPERLCMPIVDHFQSLGGEVR 326 (567)
T ss_pred hhHHHHHHHHHHHHhccCCc-------------------------------eEeeecCCchHHHHHHHHHHHHhcCCEEE
Confidence 999998876653211 0111 122334443 33443332 11
Q ss_pred -C------cccCCC--eEEEecCCCcccceeecCEEEEcCChhhhhHhhhccCC-CC-cccCCCCCCCCcceEEEEEEec
Q 018468 216 -G------RSALEN--WSLCSSNQEKQSLGLSFDAVIMTAPLCNVKEMKITKGG-NL-FPLDFLPEVIYMPLSVIITTFK 284 (355)
Q Consensus 216 -~------~~~~~~--~~V~~~~g~~~~~~~~ad~VI~a~P~~~l~~l~~~~~~-~~-~~~~~l~~~~~~~v~~v~l~~~ 284 (355)
+ ..++++ +.|.+.+|+ ++.||+||+|+|+..++.|+ ++. .+ ...+.++++.+.++++|+++|+
T Consensus 327 l~~~V~~I~~~~~g~v~~v~~~~G~----~~~ad~VI~a~p~~~l~~Ll--~~~~~~~~~~~~l~~l~~~~v~~v~l~~d 400 (567)
T PLN02612 327 LNSRIKKIELNDDGTVKHFLLTNGS----VVEGDVYVSATPVDILKLLL--PDQWKEIPYFKKLDKLVGVPVINVHIWFD 400 (567)
T ss_pred eCCeeeEEEECCCCcEEEEEECCCc----EEECCEEEECCCHHHHHHhC--cchhcCcHHHHHHHhcCCCCeEEEEEEEC
Confidence 1 112234 235555664 78999999999999999884 332 12 3344566788999999999999
Q ss_pred CCCCCCCCCceEEEecCCCCCCCCceEEEEec-CCCCCCCCCCCceEEEEEecCCCCccccCCCchHHhhc
Q 018468 285 KENVRRPLEGFGVLVPSKEQQNGLKTLGTLFS-SMMFPDRVPKDLYLYTTFVGGSRNKELAKASTYKELQS 354 (355)
Q Consensus 285 ~~~~~~~~~g~g~l~~~~~~~~~~~~~~~~~~-s~~~~~~~p~~~~~l~~~~~g~~~~~~~~~sd~e~~~~ 354 (355)
+++|. ... +.++ ... ....+.++ |...+...++++.++.++++ .++++..++|+|+++.
T Consensus 401 r~~~~-~~~--~~~~-~~~-----~~~~~~~d~S~~~~~~~~~~~~ll~~~~~--~a~~~~~~sdeei~e~ 460 (567)
T PLN02612 401 RKLKN-TYD--HLLF-SRS-----PLLSVYADMSTTCKEYYDPNKSMLELVFA--PAEEWISRSDEDIIDA 460 (567)
T ss_pred cccCC-CCC--ceee-cCC-----CCceeehhhhhcchhhcCCCCeEEEEEEE--cChhhhcCCHHHHHHH
Confidence 98763 222 2233 222 12223332 22222233444567666654 4678999999999875
No 14
>PLN02529 lysine-specific histone demethylase 1
Probab=99.90 E-value=8.8e-23 Score=202.93 Aligned_cols=288 Identities=16% Similarity=0.142 Sum_probs=175.7
Q ss_pred CeeecCCCCCceEEEeecC--C--eEEcccCCeeecCcH-HHHHHHHHcCCccccccccCCCceEEEECCEEeecCCCch
Q 018468 1 MVFEADERAGGKLRSISKD--G--LIWDEGANTMTESEM-EVKGLLDDLGIREKQQFPISQYKRYVVRNGVPFLIPTNPI 75 (355)
Q Consensus 1 ~vlEA~drvGGri~T~~~~--g--~~~d~G~~~~~~~~~-~~~~l~~~lGl~~~~~~~~~~~~~~i~~~g~~~~~p~~~~ 75 (355)
+|||+++|+|||++|.+.+ | ..+|+||+|+++.+. .+..+++++|+..... .....++..+|..+. ....
T Consensus 187 ~v~E~~~~~GG~~~t~~~~~~g~~~~~DlGaswi~g~~~npl~~la~~lgl~~~~~---~~~~~~~~~~G~~v~--~~~~ 261 (738)
T PLN02529 187 VVLEGRNRPGGRVYTQKMGRKGQFAAVDLGGSVITGIHANPLGVLARQLSIPLHKV---RDNCPLYKPDGALVD--KEID 261 (738)
T ss_pred EEEecCccCcCceeeecccCCCCceEEecCCeeccccccchHHHHHHHhCCCcccc---CCCceEEeCCCcCcc--hhhh
Confidence 5899999999999999874 3 489999999986543 3888999999976422 222333344554432 1111
Q ss_pred hhhh---cccCChhHHHHHhcccccccCCCcccccCCCCCCCHHHHHHHhh------cHHHHHHHhhhhhhcc---ccCC
Q 018468 76 ALLT---SNFLSAQSKFQIILEPFLWKKSDSAKVSAEDAKESVGGFFQRHF------GREVVDFLIDPFVAGT---SAGD 143 (355)
Q Consensus 76 ~~l~---~~~ls~~~~~~~~~~~~~~~~~~~~~~~~~~~~~sv~~~l~~~~------~~~~~~~~~~p~~~~~---~~~~ 143 (355)
..+. ..++ +++..+.... . ...++.|+.+|+.+.. -....+.++...+..+ ++.+
T Consensus 262 ~~~~~~~~~~l---~~~~~l~~~~---~-------~~~~d~Sl~~~le~~~~~~~~~~t~~e~~ll~~~~~~le~a~~~~ 328 (738)
T PLN02529 262 SNIEFIFNKLL---DKVTELRQIM---G-------GFANDISLGSVLERLRQLYGVARSTEERQLLDWHLANLEYANAGC 328 (738)
T ss_pred hhHHHHHHHHH---HHHHHHHHhc---c-------cCccCCCHHHHHHHHHhhhccCCCHHHHHHHHHHHHHhceecCCC
Confidence 0000 0000 1111111111 0 1356899999997532 1122234555544333 3334
Q ss_pred cccchHHhhchHHHHHHHhhCchHHHHHHhhhhhhhhhhhhhcCchhhhcCCcceeEeCcchhhHHhhcccc-----C--
Q 018468 144 PESLVMRHSFPELWNLEKRYGSVIAGAIKSKFSARKEKSAEAKGSSEKKRRQRGSFSFLGGMQVLSLSYSHD-----G-- 216 (355)
Q Consensus 144 ~~~lS~~~~l~~l~~~~~~~gs~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~gG~~~l~~~l~~~-----~-- 216 (355)
.+.+|+..... .... ......+.+.||+++|+++|+.. +
T Consensus 329 ~s~LSl~~~~~--------~~~~--------------------------e~~G~~~~i~GG~~~Li~aLA~~L~IrLnt~ 374 (738)
T PLN02529 329 LSDLSAAYWDQ--------DDPY--------------------------EMGGDHCFLAGGNWRLINALCEGVPIFYGKT 374 (738)
T ss_pred hHHhhhhHhhh--------cccc--------------------------ccCCceEEECCcHHHHHHHHHhcCCEEcCCc
Confidence 44444322100 0000 00112467999999999988643 2
Q ss_pred ----cccCCCeEEEecCCCcccceeecCEEEEcCChhhhhH--hhhccCCCC-cccCCCCCCCCcceEEEEEEecCCCCC
Q 018468 217 ----RSALENWSLCSSNQEKQSLGLSFDAVIMTAPLCNVKE--MKITKGGNL-FPLDFLPEVIYMPLSVIITTFKKENVR 289 (355)
Q Consensus 217 ----~~~~~~~~V~~~~g~~~~~~~~ad~VI~a~P~~~l~~--l~~~~~~~~-~~~~~l~~~~~~~v~~v~l~~~~~~~~ 289 (355)
....++|+|++. +. ++.||+||||+|++++++ +. +.|.+| .+.++++++.|+++.||++.|+++||+
T Consensus 375 V~~I~~~~dGVtV~t~-~~----~~~AD~VIVTVPlgVLk~~~I~-F~PpLP~~K~~AI~rL~yG~v~KV~L~F~~~FW~ 448 (738)
T PLN02529 375 VDTIKYGNDGVEVIAG-SQ----VFQADMVLCTVPLGVLKKRTIR-FEPELPRRKLAAIDRLGFGLLNKVAMVFPSVFWG 448 (738)
T ss_pred eeEEEEcCCeEEEEEC-CE----EEEcCEEEECCCHHHHHhcccc-CCCCCCHHHHHHHHcCCCceeEEEEEEeCCcccc
Confidence 123467888753 32 789999999999999994 43 344334 456789999999999999999999997
Q ss_pred CCCCceEEEecCCCCCCCCceEEEEecCCCCCCCCCCCceEEEEEecCCCCccccCCCchHHhhc
Q 018468 290 RPLEGFGVLVPSKEQQNGLKTLGTLFSSMMFPDRVPKDLYLYTTFVGGSRNKELAKASTYKELQS 354 (355)
Q Consensus 290 ~~~~g~g~l~~~~~~~~~~~~~~~~~~s~~~~~~~p~~~~~l~~~~~g~~~~~~~~~sd~e~~~~ 354 (355)
.....+|++.+.... .... .+|.+. . .+.+..+|.+|++|..+..+..++++++++.
T Consensus 449 ~~~~~fG~l~~~~~~---~g~~-~~~~~~-~---~~~ggpvLvafv~G~~A~~le~lsdeeii~~ 505 (738)
T PLN02529 449 EELDTFGCLNESSNK---RGEF-FLFYGY-H---TVSGGPALVALVAGEAAQRFENTDPSTLLHR 505 (738)
T ss_pred CCCCceEEEeccCCC---CceE-EEEecC-C---CCCCCCEEEEEECchhhHHHhcCCHHHHHHH
Confidence 655678887654331 1112 233221 1 1123358899999999999999999997764
No 15
>PLN03000 amine oxidase
Probab=99.90 E-value=8.6e-23 Score=203.80 Aligned_cols=291 Identities=18% Similarity=0.163 Sum_probs=173.9
Q ss_pred CeeecCCCCCceEEEeecC----CeEEcccCCeeecCcH-HHHHHHHHcCCccccccccCCCceEEEECCEEeecCCCch
Q 018468 1 MVFEADERAGGKLRSISKD----GLIWDEGANTMTESEM-EVKGLLDDLGIREKQQFPISQYKRYVVRNGVPFLIPTNPI 75 (355)
Q Consensus 1 ~vlEA~drvGGri~T~~~~----g~~~d~G~~~~~~~~~-~~~~l~~~lGl~~~~~~~~~~~~~~i~~~g~~~~~p~~~~ 75 (355)
+|||+++|+|||++|.+.+ |+.+|+||+|+++.+. .+..|+++||+.... ......+++.+|+.+ |.+..
T Consensus 211 ~VlE~~~riGGRi~T~~~~g~~~~~~~DlGas~i~g~~~npl~~L~~qlgl~l~~---~~~~~~ly~~~Gk~v--~~~~~ 285 (881)
T PLN03000 211 TVLEGRKRPGGRVYTKKMEANRVGAAADLGGSVLTGTLGNPLGIIARQLGSSLYK---VRDKCPLYRVDGKPV--DPDVD 285 (881)
T ss_pred EEEEccCcCCCCcceecccCCCCceEeecCCeEEeCCCccHHHHHHHHcCCceee---cCCCCeEEEeCCcCC--chhhh
Confidence 5899999999999999864 5789999999987643 466789999998532 223445666677654 22111
Q ss_pred h---hhhcccCChhHHHHHhcccccccCCCcccccCCCCCCCHHHHHHH---hhcHHH---HHHHhhhhhhccccCCccc
Q 018468 76 A---LLTSNFLSAQSKFQIILEPFLWKKSDSAKVSAEDAKESVGGFFQR---HFGREV---VDFLIDPFVAGTSAGDPES 146 (355)
Q Consensus 76 ~---~l~~~~ls~~~~~~~~~~~~~~~~~~~~~~~~~~~~~sv~~~l~~---~~~~~~---~~~~~~p~~~~~~~~~~~~ 146 (355)
. .....++....+++...+ ....++|+.+++.. .++... ...++.+.+
T Consensus 286 ~~ve~~fn~lLd~~~~lr~l~~-------------~~~~D~SLg~aLe~~~~~~g~~~t~e~~~Ll~w~l---------- 342 (881)
T PLN03000 286 LKVEVAFNQLLDKASKLRQLMG-------------DVSMDVSLGAALETFRQVSGNDVATEEMGLFNWHL---------- 342 (881)
T ss_pred hhHHHHHHHHHHHHHHHHHHhc-------------ccCcCCcHHHHHHHHHHHHcccCCHHHHHHHHHHH----------
Confidence 0 100112211111111111 12346788776541 111100 011222222
Q ss_pred chHHhhchHHHHHHHhhCchHHHHHHhhhhhhhhhhhhhcCchhhhcCCcceeEeCcchhhHHhhcccc-----C-----
Q 018468 147 LVMRHSFPELWNLEKRYGSVIAGAIKSKFSARKEKSAEAKGSSEKKRRQRGSFSFLGGMQVLSLSYSHD-----G----- 216 (355)
Q Consensus 147 lS~~~~l~~l~~~~~~~gs~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~gG~~~l~~~l~~~-----~----- 216 (355)
..++...++.+....... +.+. ... ......+.++||+++|+++|+.. +
T Consensus 343 ----------anLE~~~as~ls~LSl~~------wdqd-~~~----e~~G~~~~v~GG~~~LieaLa~~L~I~Ln~~Vt~ 401 (881)
T PLN03000 343 ----------ANLEYANAGLVSKLSLAF------WDQD-DPY----DMGGDHCFLPGGNGRLVQALAENVPILYEKTVQT 401 (881)
T ss_pred ----------HHHhcccccCHHHHHHHH------hhhc-ccc----cCCCceEEeCCCHHHHHHHHHhhCCcccCCcEEE
Confidence 111111111111111000 0000 000 01112567999999999988643 1
Q ss_pred -cccCCCeEEEecCCCcccceeecCEEEEcCChhhhh--HhhhccCCCC-cccCCCCCCCCcceEEEEEEecCCCCCCCC
Q 018468 217 -RSALENWSLCSSNQEKQSLGLSFDAVIMTAPLCNVK--EMKITKGGNL-FPLDFLPEVIYMPLSVIITTFKKENVRRPL 292 (355)
Q Consensus 217 -~~~~~~~~V~~~~g~~~~~~~~ad~VI~a~P~~~l~--~l~~~~~~~~-~~~~~l~~~~~~~v~~v~l~~~~~~~~~~~ 292 (355)
....++|+|++.++ ++.||+||||+|+.+++ .+. +.|.+| .+.++++++.|+.+.||++.|+++||+.+.
T Consensus 402 I~~~~dgV~V~~~~~-----~~~AD~VIvTVPlgVLk~~~I~-F~PpLP~~K~~AI~rL~~G~l~KViL~Fd~~FW~~d~ 475 (881)
T PLN03000 402 IRYGSNGVKVIAGNQ-----VYEGDMVLCTVPLGVLKNGSIK-FVPELPQRKLDCIKRLGFGLLNKVAMLFPYVFWSTDL 475 (881)
T ss_pred EEECCCeEEEEECCc-----EEEeceEEEcCCHHHHhhCcee-eCCCCCHHHHHHHHcCCCcceEEEEEEeCCccccCCC
Confidence 12356788876443 89999999999999999 454 444444 456899999999999999999999998777
Q ss_pred CceEEEecCCCCCCCCceEEEEecCCCCCCCCCCCceEEEEEecCCCCccccCCCchHHhhc
Q 018468 293 EGFGVLVPSKEQQNGLKTLGTLFSSMMFPDRVPKDLYLYTTFVGGSRNKELAKASTYKELQS 354 (355)
Q Consensus 293 ~g~g~l~~~~~~~~~~~~~~~~~~s~~~~~~~p~~~~~l~~~~~g~~~~~~~~~sd~e~~~~ 354 (355)
.+||++++... .....++|.+. .+ +.+..+|.+|++|..+.++..++++|+++.
T Consensus 476 ~~FG~l~~~~~----~rg~~~~f~s~-sp---~~G~pVLvafv~Gd~A~~le~lSdeE~ve~ 529 (881)
T PLN03000 476 DTFGHLTEDPN----YRGEFFLFYSY-AP---VAGGPLLIALVAGEAAHKFETMPPTDAVTR 529 (881)
T ss_pred CceeEEecCCC----CCceeEEEeCC-CC---CCCCcEEEEEecCchhHHhhcCCHHHHHHH
Confidence 78999875432 11223344332 11 134569999999999999999999998764
No 16
>TIGR02731 phytoene_desat phytoene desaturase. Plants and cyanobacteria (and, supposedly, Chlorobium tepidum) have a conserved pathway from two molecules geranylgeranyl-PP to one of all-trans-lycopene. Members of this family are the enzyme pytoene desaturase (also called phytoene dehydrogenase). This model does not include the region of the chloroplast transit peptide in plants. A closely related family, excluded by this model, is zeta-carotene desaturase, another enzyme in the same pathway.
Probab=99.90 E-value=2.3e-22 Score=194.31 Aligned_cols=308 Identities=16% Similarity=0.154 Sum_probs=189.4
Q ss_pred CeeecCCCCCceEEEee-cCCeEEcccCCeeecCcHHHHHHHHHcCCccccccccCCCceEEEE--CCEEe--e---cCC
Q 018468 1 MVFEADERAGGKLRSIS-KDGLIWDEGANTMTESEMEVKGLLDDLGIREKQQFPISQYKRYVVR--NGVPF--L---IPT 72 (355)
Q Consensus 1 ~vlEA~drvGGri~T~~-~~g~~~d~G~~~~~~~~~~~~~l~~~lGl~~~~~~~~~~~~~~i~~--~g~~~--~---~p~ 72 (355)
+|||+++|+|||++|++ .+|+.+|.|+|++...++++++++++||+.+.+.+.. ....|... +++.. . +|.
T Consensus 26 ~vlE~~~~~GG~~~s~~~~~g~~~d~G~~~~~~~~~~~~~l~~~lg~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~ 104 (453)
T TIGR02731 26 IVLEARDVLGGKVAAWKDEDGDWYETGLHIFFGAYPNMLQLLKELNIEDRLQWKS-HSMIFNQPDKPGTFSRFDFPDIPA 104 (453)
T ss_pred EEEecCCCCCCCcceeECCCCCEEEcCcceeccCCchHHHHHHHcCCccceeecC-CceEEecCCCCcceeeccCCCCCC
Confidence 58999999999999985 5799999999999988999999999999987544322 11111111 22222 2 222
Q ss_pred Cc---hhhhh-cccCChhHHHHHhcccccccCCCcccccCCCCCCCHHHHHHH-hhcHHHHHHHhhhhhhccccCCcccc
Q 018468 73 NP---IALLT-SNFLSAQSKFQIILEPFLWKKSDSAKVSAEDAKESVGGFFQR-HFGREVVDFLIDPFVAGTSAGDPESL 147 (355)
Q Consensus 73 ~~---~~~l~-~~~ls~~~~~~~~~~~~~~~~~~~~~~~~~~~~~sv~~~l~~-~~~~~~~~~~~~p~~~~~~~~~~~~l 147 (355)
.. ..++. ...+++.+++++.......... ........+++|+.+|+++ .+++.+.+.+++|++.++|+.+++++
T Consensus 105 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~s~~~~l~~~~~~~~~~~~~~~pl~~~~~~~~p~~~ 183 (453)
T TIGR02731 105 PFNGVAAILRNNDMLTWPEKIKFAIGLLPAIVR-GQKYVEEQDKYTVTEWLRKQGVPERVNDEVFIAMSKALNFINPDEL 183 (453)
T ss_pred CHHHHHHHhcCcCCCCHHHHHHHHHHhHHHHhc-CccchhhhccCCHHHHHHHcCCCHHHHHHHHHHHHHHHCCCCHHHH
Confidence 21 22232 2357788888766543210000 0000134579999999997 57888899999999999999999999
Q ss_pred hHHhhchHHHHHHH-hhCchHHHHHHhhhhhhhhhhhhhcCchhhhcCCcceeEeCcc-----hhhHHhhcccc------
Q 018468 148 VMRHSFPELWNLEK-RYGSVIAGAIKSKFSARKEKSAEAKGSSEKKRRQRGSFSFLGG-----MQVLSLSYSHD------ 215 (355)
Q Consensus 148 S~~~~l~~l~~~~~-~~gs~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~gG-----~~~l~~~l~~~------ 215 (355)
|+.++++.+..+.. .+++. .....|| .+.|...+...
T Consensus 184 S~~~~~~~l~~~~~~~~g~~-------------------------------~~~~~g~~~~~l~~~l~~~l~~~g~~i~l 232 (453)
T TIGR02731 184 SMTVVLTALNRFLQERHGSK-------------------------------MAFLDGAPPERLCQPIVDYITSRGGEVRL 232 (453)
T ss_pred HHHHHHHHHHHHHhcCCCCe-------------------------------eEeecCCChHHHHHHHHHHHHhcCCEEeC
Confidence 99999877654211 11111 1112232 23333333211
Q ss_pred C-----c-ccCCC-e-EEEecCCCc-ccceeecCEEEEcCChhhhhHhhhccCCC--CcccCCCCCCCCcceEEEEEEec
Q 018468 216 G-----R-SALEN-W-SLCSSNQEK-QSLGLSFDAVIMTAPLCNVKEMKITKGGN--LFPLDFLPEVIYMPLSVIITTFK 284 (355)
Q Consensus 216 ~-----~-~~~~~-~-~V~~~~g~~-~~~~~~ad~VI~a~P~~~l~~l~~~~~~~--~~~~~~l~~~~~~~v~~v~l~~~ 284 (355)
+ . ...++ + .|++.+|.+ ...++.||+||+|+|+..+.+|+ ++.. ++..+.++++++.++.+|++.|+
T Consensus 233 ~~~V~~I~~~~~~~v~~v~~~~~~~~~~~~~~a~~VI~a~p~~~~~~lL--~~~~~~~~~~~~~~~~~~~~~~~v~l~~~ 310 (453)
T TIGR02731 233 NSRLKEIVLNEDGSVKHFVLADGEGQRRFEVTADAYVSAMPVDIFKLLL--PQPWKQMPFFQKLNGLEGVPVINVHIWFD 310 (453)
T ss_pred CCeeEEEEECCCCCEEEEEEecCCCCceeEEECCEEEEcCCHHHHHhhC--chhhhcCHHHHHhhcCCCCcEEEEEEEEc
Confidence 1 1 12233 2 344444321 11157899999999999998884 4322 23445677788999999999999
Q ss_pred CCCCCCCCCceEEEecCCCCCCCCceEEEEecCCCCCCCCCCCceEEEEEecCCCCccccCCCchHHhhc
Q 018468 285 KENVRRPLEGFGVLVPSKEQQNGLKTLGTLFSSMMFPDRVPKDLYLYTTFVGGSRNKELAKASTYKELQS 354 (355)
Q Consensus 285 ~~~~~~~~~g~g~l~~~~~~~~~~~~~~~~~~s~~~~~~~p~~~~~l~~~~~g~~~~~~~~~sd~e~~~~ 354 (355)
++++. .. +++++..+ ...+...+.+.+++...| ++.++.+++++. +++..++|+|+++.
T Consensus 311 ~~~~~--~~--~~~~~~~~----~~~~~~~~s~~~~~~~~~-~~~l~~~~~~~~--~~~~~~~~ee~~~~ 369 (453)
T TIGR02731 311 RKLTT--VD--HLLFSRSP----LLSVYADMSETCKEYADP-DKSMLELVFAPA--ADWIGRSDEEIIDA 369 (453)
T ss_pred cccCC--CC--ceeeeCCC----cceeecchhhhChhhcCC-CCeEEEEEecCh--hhhhcCCHHHHHHH
Confidence 98653 12 44555432 112222333333443434 357777766643 67788999998764
No 17
>TIGR02732 zeta_caro_desat carotene 7,8-desaturase. Carotene 7,8-desaturase, also called zeta-carotene desaturase, catalyzes multiple steps in the pathway from geranylgeranyl-PP to all-trans-lycopene in plants and cyanobacteria. A similar enzyme and pathway is found in the green sulfur bacterium Chlorobium tepidum.
Probab=99.89 E-value=2.8e-22 Score=193.71 Aligned_cols=252 Identities=15% Similarity=0.115 Sum_probs=168.3
Q ss_pred CeeecCCCCCceEEEee-cCCeEEcccCCeeecCcHHHHHHHHHcCCccccccccCCCceEEEECCEEee--------cC
Q 018468 1 MVFEADERAGGKLRSIS-KDGLIWDEGANTMTESEMEVKGLLDDLGIREKQQFPISQYKRYVVRNGVPFL--------IP 71 (355)
Q Consensus 1 ~vlEA~drvGGri~T~~-~~g~~~d~G~~~~~~~~~~~~~l~~~lGl~~~~~~~~~~~~~~i~~~g~~~~--------~p 71 (355)
+|||+++++||+++|+. .+|+.+|.|+|++...++++.++++++|+.+.+.... ....|...++++.. .|
T Consensus 26 ~v~E~~~~~GG~~~~~~~~~g~~~d~G~~~~~~~~~~~~~~~~~lg~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~P 104 (474)
T TIGR02732 26 DIYESRSFIGGKVGSWVDGDGNHIEMGLHVFFGCYANLFRLMKKVGAEDNLLLKE-HTHTFVNKGGDIGELDFRFATGAP 104 (474)
T ss_pred EEEEecCCCCceeeeeecCCCceEeeceEEecCchHHHHHHHHHcCCcccccccc-ceeEEEcCCCcccccccCCCCCCc
Confidence 58999999999999984 5799999999999988999999999999987654322 12223333444321 23
Q ss_pred -CCchhhhhcccCChhHHHHHhcccccccCC----Ccc---cccCCCCCCCHHHHHHHhhcHH-HHHHHhhhhhhccccC
Q 018468 72 -TNPIALLTSNFLSAQSKFQIILEPFLWKKS----DSA---KVSAEDAKESVGGFFQRHFGRE-VVDFLIDPFVAGTSAG 142 (355)
Q Consensus 72 -~~~~~~l~~~~ls~~~~~~~~~~~~~~~~~----~~~---~~~~~~~~~sv~~~l~~~~~~~-~~~~~~~p~~~~~~~~ 142 (355)
..+..+++++.+++.+|+++...++.+... +.. ......+++|+.+|++++.+++ ..+++++|++.++++.
T Consensus 105 ~~~~~~~l~~~~ls~~dklr~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~t~~~~l~~~~~~~~~~~~~~~Pll~~~~~~ 184 (474)
T TIGR02732 105 FNGLKAFFTTSQLKWVDKLRNALALGTSPIVRGLVDYDGAMKTIRDLDKISFAEWFLSHGGSLGSIKRMWDPIAYALGFI 184 (474)
T ss_pred hhhhHHHhcCCCCCHHHHHHHHHHhhhhHHHhhccccchhhhhhhhhccccHHHHHHHcCCCHHHHHHHHHHHHHHhcCC
Confidence 123466778899999999876654321100 000 0012346899999999987764 7999999999999999
Q ss_pred CcccchHHhhchHHHHHHH-hhCchHHHHHHhhhhhhhhhhhhhcCchhhhcCCcceeEeCcchhh-----HHhhccccC
Q 018468 143 DPESLVMRHSFPELWNLEK-RYGSVIAGAIKSKFSARKEKSAEAKGSSEKKRRQRGSFSFLGGMQV-----LSLSYSHDG 216 (355)
Q Consensus 143 ~~~~lS~~~~l~~l~~~~~-~~gs~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~gG~~~-----l~~~l~~~~ 216 (355)
+++++|+.++++.+..+.. ..+ .....++||++. +++.+...+
T Consensus 185 ~~~~~Sa~~~~~~~~~~~~~~~~-------------------------------s~~~~~~g~~~~~l~~pl~~~L~~~G 233 (474)
T TIGR02732 185 DCENISARCMLTIFMLFAAKTEA-------------------------------SKLRMLKGSPDKYLTKPILEYIEARG 233 (474)
T ss_pred CHHHHHHHHHHHHHHHHHhCCCc-------------------------------ceeeeecCCcchhHHHHHHHHHHHCC
Confidence 9999999999775542210 000 012345566554 334443321
Q ss_pred ------c------ccC--CCeE-E---EecCCCcccceeecCEEEEcCChhhhhHhhhccCCC--CcccCCCCCCCCcce
Q 018468 217 ------R------SAL--ENWS-L---CSSNQEKQSLGLSFDAVIMTAPLCNVKEMKITKGGN--LFPLDFLPEVIYMPL 276 (355)
Q Consensus 217 ------~------~~~--~~~~-V---~~~~g~~~~~~~~ad~VI~a~P~~~l~~l~~~~~~~--~~~~~~l~~~~~~~v 276 (355)
. .+. ++++ | .+.+|. ..+++.||+||+|+|+..+.+|+ ++.. +.....+..+.+.++
T Consensus 234 g~i~~~~~V~~I~~~~~~~~~~~v~~v~~~~g~-~~~~~~aD~VVlA~p~~~~~~Ll--~~~~~~~~~~~~l~~l~~~pi 310 (474)
T TIGR02732 234 GKFHLRHKVREIKYEKSSDGSTRVTGLIMSKPE-GKKVIKADAYVAACDVPGIKRLL--PQEWRQFEEFDNIYKLDAVPV 310 (474)
T ss_pred CEEECCCEEEEEEEecCCCCceeEEEEEEecCC-cceEEECCEEEECCChHHHHhhC--ChhhhcCHHHhhHhcCCCCCe
Confidence 0 111 2221 3 343331 11358899999999999999994 4432 223457788999999
Q ss_pred EEEEEEecCCC
Q 018468 277 SVIITTFKKEN 287 (355)
Q Consensus 277 ~~v~l~~~~~~ 287 (355)
++|++.|+++.
T Consensus 311 ~~v~l~~~~~v 321 (474)
T TIGR02732 311 ATVQLRYDGWV 321 (474)
T ss_pred EEEEEEecccc
Confidence 99999999754
No 18
>PLN02487 zeta-carotene desaturase
Probab=99.89 E-value=1.9e-21 Score=189.71 Aligned_cols=316 Identities=16% Similarity=0.102 Sum_probs=195.6
Q ss_pred CeeecCCCCCceEEEee-cCCeEEcccCCeeecCcHHHHHHHHHcCCccccccccCCCceEEEECCEEe------ecCCC
Q 018468 1 MVFEADERAGGKLRSIS-KDGLIWDEGANTMTESEMEVKGLLDDLGIREKQQFPISQYKRYVVRNGVPF------LIPTN 73 (355)
Q Consensus 1 ~vlEA~drvGGri~T~~-~~g~~~d~G~~~~~~~~~~~~~l~~~lGl~~~~~~~~~~~~~~i~~~g~~~------~~p~~ 73 (355)
+|+|+++++||+++|+. .+|+.+|.|+|++.+.++++++++++||+.+.+..+. ....|...+|+.. ++|..
T Consensus 102 ~i~E~~~~~gG~~~s~~~~~g~~~e~G~h~~~~~~~~~~~ll~~LGl~~~~~~~~-~~~~~~~~~g~~~~~~~~~p~~~p 180 (569)
T PLN02487 102 DIYESRPFIGGKVGSFVDKNGNHIEMGLHVFFGCYNNLFRLMKKVGADENLLVKD-HTHTFVNKGGDVGELDFRFPVGAP 180 (569)
T ss_pred EEEecCCCCCCceeeeeecCCcEEecceeEecCCcHHHHHHHHhcCCcccccccc-cceeEEecCCEEeeeccCCCCCch
Confidence 58999999999999996 5799999999999988999999999999988755432 2233444455552 22221
Q ss_pred ---chhhhhcccCChhHHHHHhcccccccC----CCc---ccccCCCCCCCHHHHHHHhhcHH-HHHHHhhhhhhccccC
Q 018468 74 ---PIALLTSNFLSAQSKFQIILEPFLWKK----SDS---AKVSAEDAKESVGGFFQRHFGRE-VVDFLIDPFVAGTSAG 142 (355)
Q Consensus 74 ---~~~~l~~~~ls~~~~~~~~~~~~~~~~----~~~---~~~~~~~~~~sv~~~l~~~~~~~-~~~~~~~p~~~~~~~~ 142 (355)
...+++++.+++.+|+++...++..+. .+. .......+++|+.+|++++.+++ .++++|+|++.+++++
T Consensus 181 l~~~~~~l~~~~Ls~~dklr~~~~l~~~~~~~al~~~~~~~~~~~~~d~~sv~~~l~r~~g~~~~~~~l~dPll~~~~~~ 260 (569)
T PLN02487 181 LHGIKAFLTTNQLEPYDKARNALALATSPVVRALVDPDGAMRDIRDLDDISFSDWFTSHGGTRMSIKRMWDPIAYALGFI 260 (569)
T ss_pred hhhHHHHHcCCCCCHHHHHhhcccccccchhhhccCccccccccccccCCcHHHHHHHhCCCHHHHHHHHHHHHHHhhCC
Confidence 236777888999999987655422110 000 00012456899999999998854 9999999999999999
Q ss_pred CcccchHHhhchHHHHHHHhhCchHHHHHHhhhhhhhhhhhhhcCchhhhcCCcceeEeCcchhh-HHhhcc----ccCc
Q 018468 143 DPESLVMRHSFPELWNLEKRYGSVIAGAIKSKFSARKEKSAEAKGSSEKKRRQRGSFSFLGGMQV-LSLSYS----HDGR 217 (355)
Q Consensus 143 ~~~~lS~~~~l~~l~~~~~~~gs~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~gG~~~-l~~~l~----~~~~ 217 (355)
+++++|+.+++..|..+ . .. ........++||++. |.+.+. ..+-
T Consensus 261 ~~d~~SA~~~~~vl~~~--------~--~~--------------------~~~~~l~~~~Gg~~~~l~~pl~~~L~~~Gg 310 (569)
T PLN02487 261 DCDNISARCMLTIFSLF--------A--TK--------------------TEASLLRMLKGSPDVRLSGPIAKYITDRGG 310 (569)
T ss_pred CHHHHHHHHHHHHHHHH--------h--hc--------------------CCcceeeecCCCchHHHHHHHHHHHHHcCC
Confidence 99999999886544210 0 00 001124467899985 665442 2210
Q ss_pred ------------cc--CCC----eEEEecCCCcccceeecCEEEEcCChhhhhHhhhccCCCCcc--cCCCCCCCCcceE
Q 018468 218 ------------SA--LEN----WSLCSSNQEKQSLGLSFDAVIMTAPLCNVKEMKITKGGNLFP--LDFLPEVIYMPLS 277 (355)
Q Consensus 218 ------------~~--~~~----~~V~~~~g~~~~~~~~ad~VI~a~P~~~l~~l~~~~~~~~~~--~~~l~~~~~~~v~ 277 (355)
.. .++ +.|++.++. ..+.+.+|+||+|+|+..+.+|+ ++..++. ...+..+.+.+|+
T Consensus 311 ~V~l~~~V~~I~~~~~~~g~~~v~gv~~~~~~-~~~~~~aD~VV~A~p~~~~~~Ll--p~~~~~~~~~~~l~~L~~~pi~ 387 (569)
T PLN02487 311 RFHLRWGCREILYDKSPDGETYVTGLKVSKAT-EKEIVKADAYVAACDVPGIKRLL--PEQWREYEFFDNIYKLVGVPVV 387 (569)
T ss_pred EEEeCCceEEEEEecCCCCceeEEEEEEecCC-CceEEECCEEEECCCHHHHHHhC--CchhhccHHHhHHhcCCCeeEE
Confidence 01 122 223442111 12368899999999999999994 5432222 3566788899999
Q ss_pred EEEEEecCCCCCCC----------CCceEEEecCCCCCCCCceEEEEecCCCCCCCCCCCceEEEEEecCCCCccccCCC
Q 018468 278 VIITTFKKENVRRP----------LEGFGVLVPSKEQQNGLKTLGTLFSSMMFPDRVPKDLYLYTTFVGGSRNKELAKAS 347 (355)
Q Consensus 278 ~v~l~~~~~~~~~~----------~~g~g~l~~~~~~~~~~~~~~~~~~s~~~~~~~p~~~~~l~~~~~g~~~~~~~~~s 347 (355)
+|+|.||++..... ..|+-.++...+. ...+.+.+--.+.-....+.....|.+++.+. +++..++
T Consensus 388 tv~L~~d~~v~~~~~~~~~r~l~~~~g~~~~~~~~~~--~~~f~~di~l~~~~~~~~~~~g~~l~~vis~a--~~~~~~~ 463 (569)
T PLN02487 388 TVQLRYNGWVTEMQDLELSRQLRRAAGLDNLLYSADA--DFSCFADLALTSPEDYYKEGEGSLIQAVLTPG--DPYMPLS 463 (569)
T ss_pred EEEEEecccccccccccccccccccccccccccccCC--CcceEeeeecCCHHHHcccCCceEEEEEEcCC--ccccCCC
Confidence 99999997643211 0111111100000 01111111001000000122236789999765 5799999
Q ss_pred chHHhhc
Q 018468 348 TYKELQS 354 (355)
Q Consensus 348 d~e~~~~ 354 (355)
++||++.
T Consensus 464 ~~ei~~~ 470 (569)
T PLN02487 464 NDKIVEK 470 (569)
T ss_pred HHHHHHH
Confidence 9999875
No 19
>PLN02328 lysine-specific histone demethylase 1 homolog
Probab=99.87 E-value=1.3e-21 Score=195.36 Aligned_cols=300 Identities=17% Similarity=0.180 Sum_probs=179.6
Q ss_pred CeeecCCCCCceEEEeecCCe----EEcccCCeeecC-cHHHHHHHHHcCCccccccccCCCceEEEECCEEe--ecCCC
Q 018468 1 MVFEADERAGGKLRSISKDGL----IWDEGANTMTES-EMEVKGLLDDLGIREKQQFPISQYKRYVVRNGVPF--LIPTN 73 (355)
Q Consensus 1 ~vlEA~drvGGri~T~~~~g~----~~d~G~~~~~~~-~~~~~~l~~~lGl~~~~~~~~~~~~~~i~~~g~~~--~~p~~ 73 (355)
+|||+++|+|||++|.+..|. .+|+|++|+++. .+.+..+++++|+...... ....+++.+|+.+ .++..
T Consensus 265 ~v~E~~~r~GGr~~t~~~~g~~~~~~~d~Gas~i~g~~~npl~~l~~~lgl~~~~~~---~~~~~~~~dG~~~~~~~~~~ 341 (808)
T PLN02328 265 VVLEGRARPGGRVKTMKMKGDGVVAAADLGGSVLTGINGNPLGVLARQLGLPLHKVR---DICPLYLPDGKAVDAEIDSK 341 (808)
T ss_pred EEEeccccCCCcccccccCCCCcceeccCCceeecCCCccHHHHHHHHcCCceEecC---CCceEEeCCCcCcchhhhhh
Confidence 589999999999999987653 689999998864 3457889999999764321 2334555566544 22222
Q ss_pred chhhhhcccCChhHHHHHhcccccccCCCcccccCCCCCCCHHHHHHHhhcHHHHHHHhhhhhhccccCCcccchHHhhc
Q 018468 74 PIALLTSNFLSAQSKFQIILEPFLWKKSDSAKVSAEDAKESVGGFFQRHFGREVVDFLIDPFVAGTSAGDPESLVMRHSF 153 (355)
Q Consensus 74 ~~~~l~~~~ls~~~~~~~~~~~~~~~~~~~~~~~~~~~~~sv~~~l~~~~~~~~~~~~~~p~~~~~~~~~~~~lS~~~~l 153 (355)
.. .+...++....+++...... ....|+|+++|+.+. .+.. + +..++++.++..
T Consensus 342 v~-~~f~~lL~~~~klr~~~~~~-----------~~~~D~SLg~~le~~--~~~~---------~-~~~~~~e~~Ll~-- 395 (808)
T PLN02328 342 IE-ASFNKLLDRVCKLRQAMIEE-----------VKSVDVNLGTALEAF--RHVY---------K-VAEDPQERMLLN-- 395 (808)
T ss_pred HH-HHHHHHHHHHHHHHHhhhhc-----------ccccCcCHHHHHHHH--hhhh---------c-cCCCHHHHHHHH--
Confidence 21 11122332222222211111 123478999999753 1110 1 233444443322
Q ss_pred hHHHHHHHhhCchHHHHHHhhhhhhhhhhhhhcCchhhhcCCcceeEeCcchhhHHhhcccc-----C------cccCCC
Q 018468 154 PELWNLEKRYGSVIAGAIKSKFSARKEKSAEAKGSSEKKRRQRGSFSFLGGMQVLSLSYSHD-----G------RSALEN 222 (355)
Q Consensus 154 ~~l~~~~~~~gs~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~gG~~~l~~~l~~~-----~------~~~~~~ 222 (355)
+.+..++...++.+..+-.. .+. .+.. .......+.+.||+++|+++|+.. + ....++
T Consensus 396 w~lanlE~~~gs~ls~LSl~------~w~--qd~~---~e~~G~~~~v~GG~~~Li~aLa~~L~I~ln~~V~~I~~~~dg 464 (808)
T PLN02328 396 WHLANLEYANASLMSNLSMA------YWD--QDDP---YEMGGDHCFIPGGNDTFVRELAKDLPIFYERTVESIRYGVDG 464 (808)
T ss_pred HHHHHHhccchhhHHHHHhh------hhh--cccc---ccCCCeEEEECCcHHHHHHHHHhhCCcccCCeeEEEEEcCCe
Confidence 22233332233322222100 000 0000 001112567999999999988643 2 123456
Q ss_pred eEEEecCCCcccceeecCEEEEcCChhhhhH--hhhccC-CCCcccCCCCCCCCcceEEEEEEecCCCCCCCCCceEEEe
Q 018468 223 WSLCSSNQEKQSLGLSFDAVIMTAPLCNVKE--MKITKG-GNLFPLDFLPEVIYMPLSVIITTFKKENVRRPLEGFGVLV 299 (355)
Q Consensus 223 ~~V~~~~g~~~~~~~~ad~VI~a~P~~~l~~--l~~~~~-~~~~~~~~l~~~~~~~v~~v~l~~~~~~~~~~~~g~g~l~ 299 (355)
|.|+ .+|. ++.||+||||+|+.++++ +. +.| +++.+.++++++.|+++.||++.|+++||......||++.
T Consensus 465 V~V~-~~G~----~~~AD~VIvTvPl~vLk~~~I~-F~P~LP~~K~~AI~~l~yG~~~KV~L~F~~~FW~~~~d~fG~l~ 538 (808)
T PLN02328 465 VIVY-AGGQ----EFHGDMVLCTVPLGVLKKGSIE-FYPELPQRKKDAIQRLGYGLLNKVALLFPYNFWGGEIDTFGHLT 538 (808)
T ss_pred EEEE-eCCe----EEEcCEEEECCCHHHHhhcccc-cCCCCCHHHHHHHHcCCCcceEEEEEEeCCccccCCCCceEEEe
Confidence 7774 4554 899999999999999994 43 344 3345668999999999999999999999976667788887
Q ss_pred cCCCCCCCCceEEEEecCCCCCCCCCCCceEEEEEecCCCCccccCCCchHHhhc
Q 018468 300 PSKEQQNGLKTLGTLFSSMMFPDRVPKDLYLYTTFVGGSRNKELAKASTYKELQS 354 (355)
Q Consensus 300 ~~~~~~~~~~~~~~~~~s~~~~~~~p~~~~~l~~~~~g~~~~~~~~~sd~e~~~~ 354 (355)
+... ..-.-++|.+ +.. +.+..+|.+|++|..+.++..++++|+++.
T Consensus 539 ~d~s----~rG~~~lf~s--~s~--~~G~~vLvafv~G~~A~~~e~lsdeE~v~~ 585 (808)
T PLN02328 539 EDPS----MRGEFFLFYS--YSS--VSGGPLLIALVAGDAAVKFETLSPVESVKR 585 (808)
T ss_pred ecCC----CCceEEEEec--CCC--CCCCcEEEEEecChhhHHHhcCCHHHHHHH
Confidence 5322 1111123332 211 224479999999999999999999998763
No 20
>PLN02676 polyamine oxidase
Probab=99.84 E-value=2.3e-20 Score=180.70 Aligned_cols=295 Identities=12% Similarity=0.117 Sum_probs=172.9
Q ss_pred CeeecCCCCCceEEEeecCCeEEcccCCeeec----CcHHHHHHHHHcCCccccccccCCCceEEEE-CCEEeecCCCch
Q 018468 1 MVFEADERAGGKLRSISKDGLIWDEGANTMTE----SEMEVKGLLDDLGIREKQQFPISQYKRYVVR-NGVPFLIPTNPI 75 (355)
Q Consensus 1 ~vlEA~drvGGri~T~~~~g~~~d~G~~~~~~----~~~~~~~l~~~lGl~~~~~~~~~~~~~~i~~-~g~~~~~p~~~~ 75 (355)
+||||++|+|||+.|.+..|+.+|+|++|++. ..+.++++++++|+...... .......++. +|+.+ |....
T Consensus 54 ~vlE~~~~~GG~~~~~~~~g~~~d~g~~~~~~~~~~~~~~~~~l~~~~g~~~~~~~-~~~~~~~~~~~~g~~~--~~~~~ 130 (487)
T PLN02676 54 LILEATDRIGGRMRKANFAGVSVELGANWVEGVGGPESNPIWELANKLKLRTFYSD-FDNLSSNIYKQDGGLY--PKKVV 130 (487)
T ss_pred EEecCCCCCCCcceeecCCCeEEecCCEEEEcccCcccChHHHHHHhcCCceeecC-ccccceeEECCCCCCC--CHHHH
Confidence 48999999999999999999999999999863 45678999999999874221 1111223333 45433 21110
Q ss_pred hhhhcccCChhHHH-HHhcccccccCCCcccccCCCCCCCH--HHHHHHhhcHHHHHHHhhhhhh-ccccCCcccchHHh
Q 018468 76 ALLTSNFLSAQSKF-QIILEPFLWKKSDSAKVSAEDAKESV--GGFFQRHFGREVVDFLIDPFVA-GTSAGDPESLVMRH 151 (355)
Q Consensus 76 ~~l~~~~ls~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~sv--~~~l~~~~~~~~~~~~~~p~~~-~~~~~~~~~lS~~~ 151 (355)
..+. ..+ ..+ ++... +..... ....++.|+ .+++.+...........+-+.. ..++.+++++|+..
T Consensus 131 ~~~~-~~~---~~~~~~~~~-~~~~~~-----~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~S~~~ 200 (487)
T PLN02676 131 QKSM-KVA---DASDEFGEN-LSISLS-----AKKAVDISILTAQRLFGQVPKTPLEMVIDYYNYDYEFAEPPRVTSLKN 200 (487)
T ss_pred HHHH-HHH---HHHHHHHHH-HHHhhc-----ccCCCCccHHHHHHHHhhCCCCHHHHHHHHHhccceeccCccccchhh
Confidence 0000 000 011 11111 100000 024567787 5555544311111111222221 23688889999876
Q ss_pred hchHHHHHHHhhCchHHHHHHhhhhhhhhhhhhhcCchhhhcCCcceeEe--CcchhhHHhhcccc--------------
Q 018468 152 SFPELWNLEKRYGSVIAGAIKSKFSARKEKSAEAKGSSEKKRRQRGSFSF--LGGMQVLSLSYSHD-------------- 215 (355)
Q Consensus 152 ~l~~l~~~~~~~gs~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~gG~~~l~~~l~~~-------------- 215 (355)
++.. +.. . . .+. ..+.+ +||+++|+.+|+..
T Consensus 201 ~~~~--------~~~-~----~------------------~g~--~~~~~~~~~G~~~l~~~La~~~~~~~~~~~~~~~I 247 (487)
T PLN02676 201 TEPN--------PTF-V----D------------------FGE--DEYFVADPRGYESLVYYLAEQFLSTKSGKITDPRL 247 (487)
T ss_pred cCcc--------ccc-c----c------------------CCC--ceEEeecCCCHHHHHHHHHhhcccccccccCCCce
Confidence 5420 000 0 0 011 12334 68999998876531
Q ss_pred --C------cccCCCeEEEecCCCcccceeecCEEEEcCChhhhhH--hhhccCCCCc-ccCCCCCCCCcceEEEEEEec
Q 018468 216 --G------RSALENWSLCSSNQEKQSLGLSFDAVIMTAPLCNVKE--MKITKGGNLF-PLDFLPEVIYMPLSVIITTFK 284 (355)
Q Consensus 216 --~------~~~~~~~~V~~~~g~~~~~~~~ad~VI~a~P~~~l~~--l~~~~~~~~~-~~~~l~~~~~~~v~~v~l~~~ 284 (355)
+ ....++|+|++.+|. ++.||+||+|+|+.++++ +. +.|.+|+ +.++++++.++.+.||++.|+
T Consensus 248 ~l~~~V~~I~~~~~gV~V~~~~G~----~~~a~~VIvtvPl~vLk~~~I~-F~P~LP~~k~~ai~~l~~g~~~Kv~l~f~ 322 (487)
T PLN02676 248 KLNKVVREISYSKNGVTVKTEDGS----VYRAKYVIVSVSLGVLQSDLIK-FKPPLPDWKIEAIYQFDMAVYTKIFLKFP 322 (487)
T ss_pred ecCCEeeEEEEcCCcEEEEECCCC----EEEeCEEEEccChHHhccCceE-EeCCCCHHHHHHHHhCCceeeEEEEEEeC
Confidence 1 113467889888885 899999999999999996 54 5655555 457889999999999999999
Q ss_pred CCCCCCCCCceEEEecCCCCCCCCceEEEEecCCCCCCCCCCCceEEEEEecCCCCccccCCCchHHhhc
Q 018468 285 KENVRRPLEGFGVLVPSKEQQNGLKTLGTLFSSMMFPDRVPKDLYLYTTFVGGSRNKELAKASTYKELQS 354 (355)
Q Consensus 285 ~~~~~~~~~g~g~l~~~~~~~~~~~~~~~~~~s~~~~~~~p~~~~~l~~~~~g~~~~~~~~~sd~e~~~~ 354 (355)
++||+......+++..... .. ...+|.+ +....| +..++.+++.|..+.++..++++|.++.
T Consensus 323 ~~FW~~~~~~~~~~~~~~~----~~-~~~~~~~--~~~~~~-~~~~l~~~~~g~~a~~~~~~s~e~~~~~ 384 (487)
T PLN02676 323 YKFWPSGPGTEFFLYAHER----RG-YYPFWQH--LENEYP-GSNVLFVTVTDEESRRIEQQPDSETKAE 384 (487)
T ss_pred CCCCCCCCCceeeeeeccc----cc-cchhhhh--cccCCC-CCCEEEEEechHHHHHHHhCCHHHHHHH
Confidence 9999743222333332211 00 0112211 111123 3358888999988889999999887653
No 21
>COG1231 Monoamine oxidase [Amino acid transport and metabolism]
Probab=99.83 E-value=6.4e-20 Score=168.54 Aligned_cols=302 Identities=14% Similarity=0.088 Sum_probs=172.6
Q ss_pred CeeecCCCCCceEEEeecCCeEEcccCCeeecCcHHHHHHHHHcCCccccccccCCCceEEEECCEEeecCC---Cchhh
Q 018468 1 MVFEADERAGGKLRSISKDGLIWDEGANTMTESEMEVKGLLDDLGIREKQQFPISQYKRYVVRNGVPFLIPT---NPIAL 77 (355)
Q Consensus 1 ~vlEA~drvGGri~T~~~~g~~~d~G~~~~~~~~~~~~~l~~~lGl~~~~~~~~~~~~~~i~~~g~~~~~p~---~~~~~ 77 (355)
+||||++|+|||+.|.+..|-+.|+|++++.++++.++.+++++|+...... .. +...+.+.+.....|. .....
T Consensus 34 ~ilEar~r~GGR~~t~r~~~~~~d~gG~~i~p~~~~~l~~~k~~gv~~~~fi-~~-g~~~~~~~~~~~~~p~~~~~~~~d 111 (450)
T COG1231 34 QILEARDRVGGRSLTARAGGEYTDLGGQYINPTHDALLAYAKEFGVPLEPFI-RD-GDNVIGYVGSSKSTPKRSLTAAAD 111 (450)
T ss_pred EEEeccCCcCceeEEEeccceeeccCCcccCccchhhhhhHHhcCCCCCcee-cc-Ccccccccccccccchhccchhhh
Confidence 5899999999999999998899999999888999999999999999874322 21 1111111111111121 00111
Q ss_pred hhcccCChhHHHHHhcccccccCCCcccccCCCCCCCHHHHHHHhhcHHHHHHHhhhhhhc-ccc-CCcccchHHhhchH
Q 018468 78 LTSNFLSAQSKFQIILEPFLWKKSDSAKVSAEDAKESVGGFFQRHFGREVVDFLIDPFVAG-TSA-GDPESLVMRHSFPE 155 (355)
Q Consensus 78 l~~~~ls~~~~~~~~~~~~~~~~~~~~~~~~~~~~~sv~~~l~~~~~~~~~~~~~~p~~~~-~~~-~~~~~lS~~~~l~~ 155 (355)
+....-....+.+...+...+..+.. .+.+.+++.+| . +++ .+.+-.++-.. .++ .++.+.++..-+..
T Consensus 112 ~~~~~~~~~~~a~~~~~~~~~~t~~~----~e~~~~~~~~W-~-~~~---~~~~~~~~~a~~~~g~~~~~~~~~~~d~~~ 182 (450)
T COG1231 112 VRGLVAELEAKARSAGELDPGLTPED----RELDLESLAAW-K-TSS---LRGLSRDPGARVSPGPIEPGDVSLLHDALP 182 (450)
T ss_pred hcchhhhhhhhhhcccccCcccCcch----hhhhhHHHHhh-h-hcc---ccccccCccceeccCCCCcccccchhhhhh
Confidence 11110000011111111111111111 34567889999 2 221 22222222111 222 34444443222111
Q ss_pred HHHHHHhhCchHHHHHHhhhhhhhhhhhhhcCchhhhcCCcceeEeCcchhhHHhhcccc-------C------cccCCC
Q 018468 156 LWNLEKRYGSVIAGAIKSKFSARKEKSAEAKGSSEKKRRQRGSFSFLGGMQVLSLSYSHD-------G------RSALEN 222 (355)
Q Consensus 156 l~~~~~~~gs~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~gG~~~l~~~l~~~-------~------~~~~~~ 222 (355)
++.. ...... + ....+..++...|||++|+++++.+ + .+..++
T Consensus 183 ~~~~--------~~~~~~--------------~--~~e~~~~~~~~~GGmd~la~Afa~ql~~~I~~~~~V~rI~q~~~g 238 (450)
T COG1231 183 LRSA--------SVVDRG--------------I--GGEIRTQMLQRLGGMDQLAEAFAKQLGTRILLNEPVRRIDQDGDG 238 (450)
T ss_pred hhhh--------hhcccc--------------c--cccccchhhccCccHHHHHHHHHHHhhceEEecCceeeEEEcCCe
Confidence 1100 000000 0 0011223454559999999987643 1 245688
Q ss_pred eEEEecCCCcccceeecCEEEEcCChhhhhHhhhccC-CCCcccCCCCCCCCcceEEEEEEecCCCCCCC--CCceEEEe
Q 018468 223 WSLCSSNQEKQSLGLSFDAVIMTAPLCNVKEMKITKG-GNLFPLDFLPEVIYMPLSVIITTFKKENVRRP--LEGFGVLV 299 (355)
Q Consensus 223 ~~V~~~~g~~~~~~~~ad~VI~a~P~~~l~~l~~~~~-~~~~~~~~l~~~~~~~v~~v~l~~~~~~~~~~--~~g~g~l~ 299 (355)
|+|++.+.+ ++.+|+||||+|+.++.+|. ++| ++++.++++..+.|.+.+|+.+.|+++||+.. +.|.++
T Consensus 239 V~Vt~~~~~----~~~ad~~i~tiPl~~l~qI~-f~P~l~~~~~~a~~~~~y~~~~K~~v~f~rpFWee~~~l~G~~~-- 311 (450)
T COG1231 239 VTVTADDVG----QYVADYVLVTIPLAILGQID-FAPLLPAEYKQAAKGVPYGSATKIGVAFSRPFWEEAGILGGESL-- 311 (450)
T ss_pred EEEEeCCcc----eEEecEEEEecCHHHHhhcc-cCCCCCHHHHHHhcCcCcchheeeeeecCchhhhhcccCCceEe--
Confidence 999998833 89999999999999999998 676 44566788888999999999999999999632 233332
Q ss_pred cCCCCCCCCceEEEEecCCCCCCCCCCCceEEEE-EecCCCCccccCCCchHHhhc
Q 018468 300 PSKEQQNGLKTLGTLFSSMMFPDRVPKDLYLYTT-FVGGSRNKELAKASTYKELQS 354 (355)
Q Consensus 300 ~~~~~~~~~~~~~~~~~s~~~~~~~p~~~~~l~~-~~~g~~~~~~~~~sd~e~~~~ 354 (355)
.+ ..+.-+.|+|. +. .++..+|.. |.-|..+..+..|+++|.++.
T Consensus 312 tD------~~~~~i~~~s~--~~--~~G~gVl~g~~~~g~~A~~~~~~~~~~r~~~ 357 (450)
T COG1231 312 TD------LGLGFISYPSA--PF--ADGPGVLLGSYAFGDDALVIDALPEAERRQK 357 (450)
T ss_pred ec------CCcceEecCcc--cc--CCCceEEEeeeeccccceeEecCCHHHHHHH
Confidence 11 12222444444 21 124445444 565888999999999997763
No 22
>PLN02976 amine oxidase
Probab=99.80 E-value=7.9e-19 Score=180.38 Aligned_cols=317 Identities=17% Similarity=0.153 Sum_probs=177.8
Q ss_pred CeeecCCCCCceEEEeec-CCeEEcccCCeeecCc--------HH-HHHHHHHcCCccccccccCCCceEEEECCEEeec
Q 018468 1 MVFEADERAGGKLRSISK-DGLIWDEGANTMTESE--------ME-VKGLLDDLGIREKQQFPISQYKRYVVRNGVPFLI 70 (355)
Q Consensus 1 ~vlEA~drvGGri~T~~~-~g~~~d~G~~~~~~~~--------~~-~~~l~~~lGl~~~~~~~~~~~~~~i~~~g~~~~~ 70 (355)
+|||+++++||+++|.+. .|+.+|+|++|+++.. ++ ...+++++|+...... .....|...+|+. +
T Consensus 720 ~VlEa~~~vGGri~t~~~~~g~pvDlGas~i~G~~~nv~~~r~~np~~~la~qlGl~l~~~~--~~~~~yd~~~G~~--V 795 (1713)
T PLN02976 720 TVLEARSRIGGRVYTDRSSLSVPVDLGASIITGVEADVATERRPDPSSLICAQLGLELTVLN--SDCPLYDVVTGEK--V 795 (1713)
T ss_pred EEEeeccCCCCceeeccccCCceeccCcEEEecccccccccccccHHHHHHHhcCCcccccc--CCCceeEccCCcC--C
Confidence 589999999999999975 5889999999887531 12 3347899999864322 1112232234543 2
Q ss_pred CCCchhhhhcccCChhHHHHHhcccccccCCCcccccCCCCCCCHHHHHHHhhcHHH----------------HHHHhhh
Q 018468 71 PTNPIALLTSNFLSAQSKFQIILEPFLWKKSDSAKVSAEDAKESVGGFFQRHFGREV----------------VDFLIDP 134 (355)
Q Consensus 71 p~~~~~~l~~~~ls~~~~~~~~~~~~~~~~~~~~~~~~~~~~~sv~~~l~~~~~~~~----------------~~~~~~p 134 (355)
|......+...+ ...+......+. ... ....+.|+++||...+.... .+.++..
T Consensus 796 ~~e~~~~v~~~f---n~lld~~~~~~~-~~g------~~a~d~SLgd~Le~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~ 865 (1713)
T PLN02976 796 PADLDEALEAEY---NSLLDDMVLLVA-QKG------EHAMKMSLEDGLEYALKRRRMPRPGVDIDETELGNAADDLYDS 865 (1713)
T ss_pred CHHHHHHHHHHH---HHHHHHHHHHHh-hcc------cCccCCCHHHHHHHHHhhhhccccccccchhhcccchhhhhhh
Confidence 322211110000 000111111110 100 12347899999986442111 0112222
Q ss_pred hhhccccCCcccchHHhhchHHHHH------HHh-h--CchHHHHHHhhhhhhhhhhhhhcCchhhhcCCcceeEeCcch
Q 018468 135 FVAGTSAGDPESLVMRHSFPELWNL------EKR-Y--GSVIAGAIKSKFSARKEKSAEAKGSSEKKRRQRGSFSFLGGM 205 (355)
Q Consensus 135 ~~~~~~~~~~~~lS~~~~l~~l~~~------~~~-~--gs~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~gG~ 205 (355)
....+-+.++++.+...++....+. ... + +.-+... . .. .+ ...... .......+.++|||
T Consensus 866 ~~~~v~G~~~er~s~~~~Ls~~er~lL~w~~~~lE~~~aa~L~eV-S----l~-~~--~qd~~y--~~fgG~~~rIkGGY 935 (1713)
T PLN02976 866 ASTGVDGGHCEKESKEDVLSPLERRVMNWHFAHLEYGCAALLKEV-S----LP-YW--NQDDVY--GGFGGAHCMIKGGY 935 (1713)
T ss_pred hhhcccccchhhhhHHHhhCHHHHHHHHHHHHhhcccccCCHHHh-h----hh-hh--hccccc--ccCCCceEEeCCCH
Confidence 2223444556666655544322110 000 0 0000000 0 00 00 000000 00011356899999
Q ss_pred hhHHhhcccc-----C------cc----------cCCCeEEEecCCCcccceeecCEEEEcCChhhhh--HhhhccCCCC
Q 018468 206 QVLSLSYSHD-----G------RS----------ALENWSLCSSNQEKQSLGLSFDAVIMTAPLCNVK--EMKITKGGNL 262 (355)
Q Consensus 206 ~~l~~~l~~~-----~------~~----------~~~~~~V~~~~g~~~~~~~~ad~VI~a~P~~~l~--~l~~~~~~~~ 262 (355)
++|+++|+.. + .. ..++|.|++.+|. ++.||+||||+|+.+|+ .+. +.|.+|
T Consensus 936 qqLIeALAe~L~IrLNtpVtrId~s~~d~~~~~s~~dGVtVtTsDGe----tftADaVIVTVPLGVLKag~I~-FsPPLP 1010 (1713)
T PLN02976 936 SNVVESLAEGLDIHLNHVVTDVSYGSKDAGASGSSRKKVKVSTSNGS----EFLGDAVLITVPLGCLKAETIK-FSPPLP 1010 (1713)
T ss_pred HHHHHHHHhhCCeecCCeEEEEEecCCcccccccCCCcEEEEECCCC----EEEeceEEEeCCHHHhhhcccc-cCCccc
Confidence 9999887632 1 11 1356889888885 89999999999999998 354 555555
Q ss_pred cc-cCCCCCCCCcceEEEEEEecCCCCCCCCCceEEEecCCCCCCCCceEEEEecCCCCCCCCCCCceEEEEEecCCCCc
Q 018468 263 FP-LDFLPEVIYMPLSVIITTFKKENVRRPLEGFGVLVPSKEQQNGLKTLGTLFSSMMFPDRVPKDLYLYTTFVGGSRNK 341 (355)
Q Consensus 263 ~~-~~~l~~~~~~~v~~v~l~~~~~~~~~~~~g~g~l~~~~~~~~~~~~~~~~~~s~~~~~~~p~~~~~l~~~~~g~~~~ 341 (355)
+. ..+++++.|+.+.||++.|+++||+....+||...... ...+.+|. .|+.+.+.+..+|.+|+.|..+.
T Consensus 1011 e~KqaAIqrLgfG~lnKV~LeFdrpFW~~d~d~FG~s~edt------dlrG~~~~--~wnlr~psG~pVLVafv~G~aAr 1082 (1713)
T PLN02976 1011 DWKYSSIQRLGFGVLNKVVLEFPEVFWDDSVDYFGATAEET------DLRGQCFM--FWNVKKTVGAPVLIALVVGKAAI 1082 (1713)
T ss_pred HHHHHHHHhhccccceEEEEEeCCccccCCCCccccccccC------CCCceEEE--eccCCCCCCCCEEEEEeccHhHH
Confidence 44 46789999999999999999999976556777543221 12233332 23333344556888999998889
Q ss_pred cccCCCchHHhhc
Q 018468 342 ELAKASTYKELQS 354 (355)
Q Consensus 342 ~~~~~sd~e~~~~ 354 (355)
.+..++++|+++.
T Consensus 1083 eiEsLSDEE~Ve~ 1095 (1713)
T PLN02976 1083 DGQSMSSSDHVNH 1095 (1713)
T ss_pred HHhhCCHHHHHHH
Confidence 9999999987753
No 23
>PF01593 Amino_oxidase: Flavin containing amine oxidoreductase This is a subset of the Pfam family; InterPro: IPR002937 This entry consists of various amine oxidases, including maize polyamine oxidase (PAO) [], L-amino acid oxidases (LAO) and various flavin containing monoamine oxidases (MAO). The aligned region includes the flavin binding site of these enzymes. In vertebrates MAO plays an important role in regulating the intracellular levels of amines via their oxidation; these include various neurotransmitters, neurotoxins and trace amines []. In lower eukaryotes such as aspergillus and in bacteria the main role of amine oxidases is to provide a source of ammonium []. PAOs in plants, bacteria and protozoa oxidise spermidine and spermine to an aminobutyral, diaminopropane and hydrogen peroxide and are involved in the catabolism of polyamines []. Other members of this family include tryptophan 2-monooxygenase, putrescine oxidase, corticosteroid binding proteins and antibacterial glycoproteins.; GO: 0016491 oxidoreductase activity, 0055114 oxidation-reduction process; PDB: 2Z3Y_A 2UXN_A 2Y48_A 2HKO_A 2XAF_A 2X0L_A 2XAJ_A 2UXX_A 2V1D_A 2Z5U_A ....
Probab=99.80 E-value=1.6e-20 Score=179.55 Aligned_cols=313 Identities=19% Similarity=0.193 Sum_probs=173.0
Q ss_pred CeeecCCCCCceEEEeecC--CeEEcccCCeeecCcHHHHHHHHHcCCccccccccCCCceEEEECCEE--eecCCCc-h
Q 018468 1 MVFEADERAGGKLRSISKD--GLIWDEGANTMTESEMEVKGLLDDLGIREKQQFPISQYKRYVVRNGVP--FLIPTNP-I 75 (355)
Q Consensus 1 ~vlEA~drvGGri~T~~~~--g~~~d~G~~~~~~~~~~~~~l~~~lGl~~~~~~~~~~~~~~i~~~g~~--~~~p~~~-~ 75 (355)
+||||++|+|||++|++.+ |+.+|+|+++|...++.+..++++||+.............+++..... ...+... .
T Consensus 18 ~vlEa~~r~GGr~~t~~~~~~g~~~e~G~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 97 (450)
T PF01593_consen 18 TVLEASDRVGGRIRTFRFDNPGFTFELGAHRFFGMYPNLLNLIDELGLELSLETFPFPQIPFVYWPFGDGRPPWPPSQLP 97 (450)
T ss_dssp EEEESSSSSBTTS-EEEETTTTEEEESSS-EEETTSHHHHHHHHHHTHHTTEEEEEESSEEEEEEEEEEEEEEEEECHHH
T ss_pred EEEEcCCCCCcceEEecCCccceeecCCcccccccchhhHHHHHHhhhcccccccccccceeeecccccccccccccccc
Confidence 5899999999999999998 999999999998888889999999998654333222222333322211 1111111 1
Q ss_pred hhh----------h-cccCChhHHHHH-hcccccccCCCcccccCCCCCCCHHHHHHHhhcHHHH-HHHhhhhhhccccC
Q 018468 76 ALL----------T-SNFLSAQSKFQI-ILEPFLWKKSDSAKVSAEDAKESVGGFFQRHFGREVV-DFLIDPFVAGTSAG 142 (355)
Q Consensus 76 ~~l----------~-~~~ls~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~sv~~~l~~~~~~~~~-~~~~~p~~~~~~~~ 142 (355)
... . ........+... ....+....+. .......++.+|+......+.. ..++.++.......
T Consensus 98 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 173 (450)
T PF01593_consen 98 RNLNEFAALISLARFFRLLERLNKLRQMLDPFFNKAEPE----FLEDDLESFLEFLDSQSFSEIFRESLFRPFFFGAFGF 173 (450)
T ss_dssp HHHHHHHCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH----HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred ccccchhhhhhccccccccccccchhccchhhhhhhhhh----hhhhhhhhhhhhhhhhhhhhhhHHHHHHhhhhhhhcc
Confidence 100 0 000000000000 00000000000 0011234555655443222222 22455555555555
Q ss_pred CcccchHHhhchHHHHHHHhhCchHHHHHHhhhhhhhhhhhhhcCchhhhcCCcceeEeCcchhhHHhhccc----c---
Q 018468 143 DPESLVMRHSFPELWNLEKRYGSVIAGAIKSKFSARKEKSAEAKGSSEKKRRQRGSFSFLGGMQVLSLSYSH----D--- 215 (355)
Q Consensus 143 ~~~~lS~~~~l~~l~~~~~~~gs~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~gG~~~l~~~l~~----~--- 215 (355)
.+...++......+.. ......... ..........|++..+...+.. +
T Consensus 174 ~~~~~~~~~~~~~~~~-----~~~~~~~~~--------------------~~~~~~~~~~g~~~~~~~~~~~~~g~~i~l 228 (450)
T PF01593_consen 174 LPDESSAALALLSFPH-----FDLQDNGGY--------------------FPFGGLTVGMGGLSLALALAAEELGGEIRL 228 (450)
T ss_dssp HHCTTTHHHHHHHHHH-----CHHHHHHHH--------------------TTSSTEEEETTTTHHHHHHHHHHHGGGEES
T ss_pred ccchhhhhHHHhhhhh-----ccccccccc--------------------ccccceeecccchhHHHHHHHhhcCceeec
Confidence 5555555422111110 000000000 0111122344555544433221 0
Q ss_pred C------cccCCCeEEEecCCCcccceeecCEEEEcCChhhhhHhhhccCCCCc-ccCCCCCCCCcceEEEEEEecCCCC
Q 018468 216 G------RSALENWSLCSSNQEKQSLGLSFDAVIMTAPLCNVKEMKITKGGNLF-PLDFLPEVIYMPLSVIITTFKKENV 288 (355)
Q Consensus 216 ~------~~~~~~~~V~~~~g~~~~~~~~ad~VI~a~P~~~l~~l~~~~~~~~~-~~~~l~~~~~~~v~~v~l~~~~~~~ 288 (355)
+ ....++++|++.+|+ +++||+||+|+|+..+.++. +.+..|. ..+++++++|.++.+|++.|++++|
T Consensus 229 ~~~V~~I~~~~~~v~v~~~~g~----~~~ad~VI~a~p~~~l~~i~-~~p~l~~~~~~a~~~~~~~~~~~v~l~~~~~~~ 303 (450)
T PF01593_consen 229 NTPVTRIEREDGGVTVTTEDGE----TIEADAVISAVPPSVLKNIL-LLPPLPEDKRRAIENLPYSSVSKVFLGFDRPFW 303 (450)
T ss_dssp SEEEEEEEEESSEEEEEETTSS----EEEESEEEE-S-HHHHHTSE-EESTSHHHHHHHHHTEEEEEEEEEEEEESSGGG
T ss_pred CCcceeccccccccccccccce----EEecceeeecCchhhhhhhh-hcccccccccccccccccCcceeEEEeeecccc
Confidence 1 123467888888886 89999999999999999743 3444444 5677899999999999999999998
Q ss_pred CCCCCceEEEecCCCCCCCCceEEEEecCCCCCCCCCCCceEEEEEecCCCCccccCCCchHHhhc
Q 018468 289 RRPLEGFGVLVPSKEQQNGLKTLGTLFSSMMFPDRVPKDLYLYTTFVGGSRNKELAKASTYKELQS 354 (355)
Q Consensus 289 ~~~~~g~g~l~~~~~~~~~~~~~~~~~~s~~~~~~~p~~~~~l~~~~~g~~~~~~~~~sd~e~~~~ 354 (355)
......++++.++. .....+++++++.+.+ .+..+++.|+.+..++++.+++++|+++.
T Consensus 304 ~~~~~~~~~~~~~~-----~~~~~~~~~~~~~~~~--~~~~~l~~~~~~~~~~~~~~~~~e~~~~~ 362 (450)
T PF01593_consen 304 PPDIDFFGILYSDG-----FSPIGYVSDPSKFPGR--PGGGVLTSYVGGPDAPEWDDLSDEEILER 362 (450)
T ss_dssp GSTTTESEEEEESS-----TSSEEEEEEECCTTSC--TTSEEEEEEEEHHHHHHHTTSCHHHHHHH
T ss_pred cccccccceecccC-----ccccccccccccCccc--ccCCcceeeeeccccchhcccchhhhHHH
Confidence 75445677777654 2345677777666554 34568888888887789999999988764
No 24
>COG2907 Predicted NAD/FAD-binding protein [General function prediction only]
Probab=99.79 E-value=7.2e-19 Score=155.08 Aligned_cols=247 Identities=18% Similarity=0.250 Sum_probs=165.9
Q ss_pred CeeecCCCCCceEEEee----cCCeEEcccCCeeec-CcHHHHHHHHHcCCccccccccCCCceEEEECCEE-e-ecCCC
Q 018468 1 MVFEADERAGGKLRSIS----KDGLIWDEGANTMTE-SEMEVKGLLDDLGIREKQQFPISQYKRYVVRNGVP-F-LIPTN 73 (355)
Q Consensus 1 ~vlEA~drvGGri~T~~----~~g~~~d~G~~~~~~-~~~~~~~l~~~lGl~~~~~~~~~~~~~~i~~~g~~-~-~~p~~ 73 (355)
|||||.+|+||+.+|+. .+|+.+|.|.+++.. +||++.+|++++|+...-.+++ ...-+.+|.+ + ..+ .
T Consensus 34 TLfEA~~rlGGha~Tv~~~~d~~g~~vDtGfiVyn~~tYpnl~~Lf~~iGv~t~as~Ms---f~v~~d~gglEy~g~t-g 109 (447)
T COG2907 34 TLFEADRRLGGHANTVAGNTDGGGVFVDTGFIVYNERTYPNLTRLFKTIGVDTKASFMS---FSVSLDMGGLEYSGLT-G 109 (447)
T ss_pred EEEeccccccCccceeeccccCCceeecceeEEecCCCcchHHHHHHHcCCCCccccee---EEEEecCCceeeccCC-C
Confidence 68999999999999995 346789999998775 8999999999999987533322 1111223322 1 111 1
Q ss_pred chhhh--hcccCChhHHHHHhcccccccC-CCcccccCCCCCCCHHHHHHH-hhcHHHHHHHhhhhhhccccCCcccchH
Q 018468 74 PIALL--TSNFLSAQSKFQIILEPFLWKK-SDSAKVSAEDAKESVGGFFQR-HFGREVVDFLIDPFVAGTSAGDPESLVM 149 (355)
Q Consensus 74 ~~~~l--~~~~ls~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~sv~~~l~~-~~~~~~~~~~~~p~~~~~~~~~~~~lS~ 149 (355)
+..++ +.+++.+ ..++|+++.+.+.. ......-....++|+++|+.+ +|+..+.+.++.|+..++|+++..+++.
T Consensus 110 l~~L~aqk~n~l~p-Rf~~mlaeiLrf~r~~~~~~d~~~~~~~tl~~~L~~~~f~~af~e~~l~P~~aaiwstp~~d~~~ 188 (447)
T COG2907 110 LAGLLAQKRNLLRP-RFPCMLAEILRFYRSDLAPSDNAGQGDTTLAQYLKQRNFGRAFVEDFLQPLVAAIWSTPLADASR 188 (447)
T ss_pred ccchhhccccccch-hHHHHHHHHHHHhhhhccchhhhcCCCccHHHHHHhcCccHHHHHHhHHHHHHHHhcCcHhhhhh
Confidence 12222 2233332 23455554322111 000000124568999999997 5999999999999999999999999886
Q ss_pred HhhchHHHHHHHhhCchHHHHHHhhhhhhhhhhhhhcCchhhhcCCcce-eEeCcchhhHHhhcccc-------C-----
Q 018468 150 RHSFPELWNLEKRYGSVIAGAIKSKFSARKEKSAEAKGSSEKKRRQRGS-FSFLGGMQVLSLSYSHD-------G----- 216 (355)
Q Consensus 150 ~~~l~~l~~~~~~~gs~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~gG~~~l~~~l~~~-------~----- 216 (355)
.-+... ..+.+++|++. + .+... ..+.||.....+.|+.. +
T Consensus 189 ~pa~~~-~~f~~nhGll~---l----------------------~~rp~wrtV~ggS~~yvq~laa~~~~~i~t~~~V~~ 242 (447)
T COG2907 189 YPACNF-LVFTDNHGLLY---L----------------------PKRPTWRTVAGGSRAYVQRLAADIRGRIETRTPVCR 242 (447)
T ss_pred hhHHHH-HHHHhccCcee---c----------------------CCCCceeEcccchHHHHHHHhccccceeecCCceee
Confidence 544332 24445566541 1 11123 47889988877776532 1
Q ss_pred -cccCCCeEEEecCCCcccceeecCEEEEcCChhhhhHhhhccCCCCcccCCCCCCCCcceEEEEEEec
Q 018468 217 -RSALENWSLCSSNQEKQSLGLSFDAVIMTAPLCNVKEMKITKGGNLFPLDFLPEVIYMPLSVIITTFK 284 (355)
Q Consensus 217 -~~~~~~~~V~~~~g~~~~~~~~ad~VI~a~P~~~l~~l~~~~~~~~~~~~~l~~~~~~~v~~v~l~~~ 284 (355)
.+-.+|+.|+-.+|. +.+||+||+|+.+..+..| ++...|+..+.++.+.|..+..|...+.
T Consensus 243 l~rlPdGv~l~~~~G~----s~rFD~vViAth~dqAl~m--L~e~sp~e~qll~a~~Ys~n~aVlhtd~ 305 (447)
T COG2907 243 LRRLPDGVVLVNADGE----SRRFDAVVIATHPDQALAL--LDEPSPEERQLLGALRYSANTAVLHTDA 305 (447)
T ss_pred eeeCCCceEEecCCCC----ccccceeeeecChHHHHHh--cCCCCHHHHHHHHhhhhhhceeEEeecc
Confidence 123578888766775 7789999999999999999 4767888888999999999888777654
No 25
>KOG0029 consensus Amine oxidase [Secondary metabolites biosynthesis, transport and catabolism]
Probab=99.73 E-value=1.1e-16 Score=153.98 Aligned_cols=142 Identities=15% Similarity=0.177 Sum_probs=98.3
Q ss_pred eEeCcchhhHHhhcccc-----C------cccCCC-eEEEecCCCcccceeecCEEEEcCChhhhhH--hhhccCCCCcc
Q 018468 199 FSFLGGMQVLSLSYSHD-----G------RSALEN-WSLCSSNQEKQSLGLSFDAVIMTAPLCNVKE--MKITKGGNLFP 264 (355)
Q Consensus 199 ~~~~gG~~~l~~~l~~~-----~------~~~~~~-~~V~~~~g~~~~~~~~ad~VI~a~P~~~l~~--l~~~~~~~~~~ 264 (355)
..+.+|+..+...++.. + ....++ +.|++.++. .+.+|+||+|+|.++++. +. +.|.+|..
T Consensus 212 ~~~~~G~~~v~~~la~~l~I~~~~~v~~i~~~~~~~~~~~~~~~~----~~~~d~vvvt~pl~vLk~~~i~-F~P~Lp~~ 286 (501)
T KOG0029|consen 212 LLMKGGYEPVVNSLAEGLDIHLNKRVRKIKYGDDGAVKVTVETGD----GYEADAVVVTVPLGVLKSGLIE-FSPPLPRW 286 (501)
T ss_pred hHhhCCccHHHhhcCCCcceeeceeeEEEEEecCCceEEEEECCC----eeEeeEEEEEccHHHhccCcee-eCCCCcHH
Confidence 45778999988877643 1 111222 345555654 589999999999999998 54 55555544
Q ss_pred -cCCCCCCCCcceEEEEEEecCCCCCCCCCceEEEecCCCCCCCCceEEEEecCCCCCCCCCCCceEEEEEecCCCCccc
Q 018468 265 -LDFLPEVIYMPLSVIITTFKKENVRRPLEGFGVLVPSKEQQNGLKTLGTLFSSMMFPDRVPKDLYLYTTFVGGSRNKEL 343 (355)
Q Consensus 265 -~~~l~~~~~~~v~~v~l~~~~~~~~~~~~g~g~l~~~~~~~~~~~~~~~~~~s~~~~~~~p~~~~~l~~~~~g~~~~~~ 343 (355)
.++++++.++.+.||.+.|++.+|+...+-||.+..... ..... +|.+. .|.. +..++..++.|..+..+
T Consensus 287 k~~aI~~lg~g~~~Kv~l~F~~~fW~~~~d~fg~~~~~~~----~~~~~-~f~~~-~~~~---~~~~l~~~~~~~~a~~~ 357 (501)
T KOG0029|consen 287 KQEAIDRLGFGLVNKVILEFPRVFWDQDIDFFGIVPETSV----LRGLF-TFYDC-KPVA---GHPVLMSVVVGEAAERV 357 (501)
T ss_pred HHHHHHhcCCCceeEEEEEeccccCCCCcCeEEEcccccc----ccchh-hhhhc-CccC---CCCeEEEEehhhhhHHH
Confidence 579999999999999999999999766667777643332 11111 33332 2211 22378888888888999
Q ss_pred cCCCchHHhhc
Q 018468 344 AKASTYKELQS 354 (355)
Q Consensus 344 ~~~sd~e~~~~ 354 (355)
..++|+++++.
T Consensus 358 ~~~~~~~~~~~ 368 (501)
T KOG0029|consen 358 ETLSDSEIVKK 368 (501)
T ss_pred hcCCHHHHHHH
Confidence 99999998764
No 26
>TIGR02734 crtI_fam phytoene desaturase. Phytoene is converted to lycopene by desaturation at four (two symmetrical pairs of) sites. This is achieved by two enzymes (crtP and crtQ) in cyanobacteria (Gloeobacter being an exception) and plants, but by a single enzyme in most other bacteria and in fungi. This single enzyme is called the bacterial-type phytoene desaturase, or CrtI. Most members of this family, part of the larger Pfam family pfam01593, which also contains amino oxidases, are CrtI itself; it is likely that all members act on either phytoene or on related compounds such as dehydrosqualene, for carotenoid biosynthesis.
Probab=99.57 E-value=4.4e-13 Score=131.34 Aligned_cols=296 Identities=18% Similarity=0.159 Sum_probs=159.2
Q ss_pred CeeecCCCCCceEEEeecCCeEEcccCCeeecCcHHHHHHHHHcCCc--ccccc-ccCCCceEEEECCEEeecCCCchhh
Q 018468 1 MVFEADERAGGKLRSISKDGLIWDEGANTMTESEMEVKGLLDDLGIR--EKQQF-PISQYKRYVVRNGVPFLIPTNPIAL 77 (355)
Q Consensus 1 ~vlEA~drvGGri~T~~~~g~~~d~G~~~~~~~~~~~~~l~~~lGl~--~~~~~-~~~~~~~~i~~~g~~~~~p~~~~~~ 77 (355)
+|||+++++||+++|++.+|+.+|.|++++.. ...+.++++++|++ ..+.+ +.+....+.+.+|+.+.+|.+...+
T Consensus 25 ~VlE~~~~~GG~~~t~~~~G~~fD~G~~~~~~-~~~~~~l~~~lg~~l~~~l~~~~~~~~~~~~~~~g~~~~~~~~~~~~ 103 (502)
T TIGR02734 25 TVVEQRDKPGGRAGVLEDDGFRFDTGPTVITM-PEALEELFALAGRDLADYVELVPLDPFYRLCWEDGSQLDVDNDQEEL 103 (502)
T ss_pred EEEECCCCCcCceEEEecCCeEEecCCeEEcc-ccHHHHHHHHcCCChhheEEEEECCCceEEECCCCCEEEecCCHHHH
Confidence 58999999999999999999999999998763 24567888889853 21111 1111222333346566666543211
Q ss_pred hh--cccCCh-----hHHHHH-------h-----ccccc-c---cCCCcccccCCCCCCCHHHHHHHhhcHHHHHHHhhh
Q 018468 78 LT--SNFLSA-----QSKFQI-------I-----LEPFL-W---KKSDSAKVSAEDAKESVGGFFQRHFGREVVDFLIDP 134 (355)
Q Consensus 78 l~--~~~ls~-----~~~~~~-------~-----~~~~~-~---~~~~~~~~~~~~~~~sv~~~l~~~~~~~~~~~~~~p 134 (355)
.. ...... ...+.. . ..++. . ...............|+.+|+++.+..+..+.++.
T Consensus 104 ~~~l~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~l~~~l~- 182 (502)
T TIGR02734 104 EAQIARFNPGDVAGYRRFLDYAERVYREGYRKLGYVPFLSPRDLLRADLPQLLALLAWRSLYSKVARFFSDERLRQAFS- 182 (502)
T ss_pred HHHHHHhCcccHHHHHHHHHHHHHHHHHHHHHHhhCCCCCHHHHHhHhhHhhhhccCcCCHHHHHHhhcCCHHHHHHhc-
Confidence 10 000000 000000 0 00000 0 00000000012357899999999888777777776
Q ss_pred hhhccccCCcccchHHhhchHHHHHHHhhCchHHHHHHhhhhhhhhhhhhhcCchhhhcCCcceeEeCcchhhHHhhccc
Q 018468 135 FVAGTSAGDPESLVMRHSFPELWNLEKRYGSVIAGAIKSKFSARKEKSAEAKGSSEKKRRQRGSFSFLGGMQVLSLSYSH 214 (355)
Q Consensus 135 ~~~~~~~~~~~~lS~~~~l~~l~~~~~~~gs~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~gG~~~l~~~l~~ 214 (355)
+....++.++.+.++.+.+- . +.. ...+.+.+.||++.+.++++.
T Consensus 183 ~~~~~~g~~p~~~~~~~~l~--~------------~~~---------------------~~~g~~~~~gG~~~l~~al~~ 227 (502)
T TIGR02734 183 FHALFLGGNPFRTPSIYALI--S------------ALE---------------------REWGVWFPRGGTGALVAAMAK 227 (502)
T ss_pred ccceeeccCcccchHHHHHH--H------------HHH---------------------hhceEEEcCCCHHHHHHHHHH
Confidence 34556778887777543210 0 000 001345688999999877642
Q ss_pred c----C------c------ccCCC-eEEEecCCCcccceeecCEEEEcCChhhhhHhhhccC-CCC-cccCCCCCCCC-c
Q 018468 215 D----G------R------SALEN-WSLCSSNQEKQSLGLSFDAVIMTAPLCNVKEMKITKG-GNL-FPLDFLPEVIY-M 274 (355)
Q Consensus 215 ~----~------~------~~~~~-~~V~~~~g~~~~~~~~ad~VI~a~P~~~l~~l~~~~~-~~~-~~~~~l~~~~~-~ 274 (355)
. + . ...++ +.|.+.+|. ++.||+||+|+++..+...+ +++ ..+ ...+.++++++ .
T Consensus 228 ~~~~~G~~i~~~~~V~~i~~~~~~~~~V~~~~g~----~~~ad~VI~a~~~~~~~~~l-~~~~~~~~~~~~~~~~~~~s~ 302 (502)
T TIGR02734 228 LAEDLGGELRLNAEVIRIETEGGRATAVHLADGE----RLDADAVVSNADLHHTYRRL-LPNHPRRRYPAARLSRKRPSP 302 (502)
T ss_pred HHHHCCCEEEECCeEEEEEeeCCEEEEEEECCCC----EEECCEEEECCcHHHHHHHh-cCccccccccccccccCCcCC
Confidence 1 1 0 11222 456666664 78999999999997777543 332 222 22345566663 4
Q ss_pred ceEEEEEEecC--CCCCCCCCceEEEecCCCC--------C--CCCceEEEEecCCCCCCCCCCCceEEEEEecCC
Q 018468 275 PLSVIITTFKK--ENVRRPLEGFGVLVPSKEQ--------Q--NGLKTLGTLFSSMMFPDRVPKDLYLYTTFVGGS 338 (355)
Q Consensus 275 ~v~~v~l~~~~--~~~~~~~~g~g~l~~~~~~--------~--~~~~~~~~~~~s~~~~~~~p~~~~~l~~~~~g~ 338 (355)
+..++++.++. ..++.......++.++.+. . .+.+.+-+...|..-|..+|+|++.+.+++.-+
T Consensus 303 s~~~~~lgl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~p~~~v~~~s~~dp~~aP~G~~~~~~~~~~~ 378 (502)
T TIGR02734 303 SLFVLYFGLLGVDGHWPQLAHHTLCFGPRYKELFDEIFRKGRLAEDPSLYLHRPTVTDPSLAPPGCENLYVLAPVP 378 (502)
T ss_pred eeeEEEEeeccccCcCCCcCceeEecCcCHHHHHHHHhcCCCCCCCCcEEEEcCCCCCCCCCCCCCccEEEEEeCC
Confidence 56677888873 1222111222222221110 0 012334444445556778888887777777433
No 27
>TIGR02733 desat_CrtD C-3',4' desaturase CrtD. Members of this family are slr1293, a carotenoid biosynthesis protein which was shown to be the C-3',4' desaturase (CrtD) of myxoxanthophyll biosynthesis in Synechocystis sp. strain PCC 6803, and close homologs (presumed to be functionally equivalent) from other cyanobacteria, where myxoxanthophyll biosynthesis is either known or expected. This enzyme can act on neurosporene and so presumably catalyzes the first step that is committed to myxoxanthophyll.
Probab=99.54 E-value=4.3e-13 Score=131.03 Aligned_cols=294 Identities=14% Similarity=0.100 Sum_probs=151.1
Q ss_pred CeeecCCCCCceEEEeecCCeEEcccCCeeecC--cHHHHHHHHHcCCccc-cccccCCCceEEEECC-EEeecCCCchh
Q 018468 1 MVFEADERAGGKLRSISKDGLIWDEGANTMTES--EMEVKGLLDDLGIREK-QQFPISQYKRYVVRNG-VPFLIPTNPIA 76 (355)
Q Consensus 1 ~vlEA~drvGGri~T~~~~g~~~d~G~~~~~~~--~~~~~~l~~~lGl~~~-~~~~~~~~~~~i~~~g-~~~~~p~~~~~ 76 (355)
+|||+++++||+++|++.+|+.+|.|+|++... ......++++||+... ....+. .....+.+| ..+.++.+...
T Consensus 28 ~vlE~~~~~GG~~~t~~~~G~~fD~G~~~~~~~~~~~~~~~~~~~lg~~~~~~~~~d~-~~~~~~~dg~~~~~~~~d~~~ 106 (492)
T TIGR02733 28 TLLEQHAQPGGCAGTFRRRGFTFDVGATQVAGLEPGGIHARIFRELGIPLPEAKILDP-ACAVDLPDGSEPIPLWHDPDR 106 (492)
T ss_pred EEEecCCCCCCccceeccCCEEEeecceEEEecCcCCHHHHHHHHcCCCCcccccCCC-CcEEEECCCceEeeeecCHHH
Confidence 589999999999999999999999999987532 2346678899998743 121121 223333345 33333333321
Q ss_pred hhh--cccCCh-hHHHHHh------------ccccc-ccC----------CCccc-ccCCCCCCCHHHHHHHh--hcHHH
Q 018468 77 LLT--SNFLSA-QSKFQII------------LEPFL-WKK----------SDSAK-VSAEDAKESVGGFFQRH--FGREV 127 (355)
Q Consensus 77 ~l~--~~~ls~-~~~~~~~------------~~~~~-~~~----------~~~~~-~~~~~~~~sv~~~l~~~--~~~~~ 127 (355)
+.. ...+.. ...+..+ ..++. +.. ..... ........|+.+|+++. +..+.
T Consensus 107 ~~~~l~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~l~~~~~~~~~~ 186 (492)
T TIGR02733 107 WQKERERQFPGSERFWQLCSQLHQSNWRFAGRDPVLPPRNYWDLLQLVSALRPDTLLTGPLSLLTVADLLRLCGLGDDRR 186 (492)
T ss_pred HHHHHHHHCCChHHHHHHHHHHHHHHHHHhhcCCCCCCCCHHHHHHHHHhcChhhhhhhhhhhhhHHHHHHHhCCCccHH
Confidence 110 000000 0000000 00000 000 00000 00112358999999875 56667
Q ss_pred HHHHhhhhhhccccCCcccchHHhhchHHHHHHHhhCchHHHHHHhhhhhhhhhhhhhcCchhhhcCCcceeEeCcchhh
Q 018468 128 VDFLIDPFVAGTSAGDPESLVMRHSFPELWNLEKRYGSVIAGAIKSKFSARKEKSAEAKGSSEKKRRQRGSFSFLGGMQV 207 (355)
Q Consensus 128 ~~~~~~p~~~~~~~~~~~~lS~~~~l~~l~~~~~~~gs~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~gG~~~ 207 (355)
.+.++...+....+.++++.++...+-.+. +. ....+.++++||+++
T Consensus 187 lr~~l~~~~~~~~~~~~~~~~~~~~~~~~~------------~~---------------------~~~~G~~~~~GG~~~ 233 (492)
T TIGR02733 187 LRRFLDLQLKLYSQEDADETAALYGATVLQ------------MA---------------------QAPHGLWHLHGSMQT 233 (492)
T ss_pred HHHHHHHHHhhhccCChhhhhHHHHHHHhh------------cc---------------------ccCCCceeecCcHHH
Confidence 777777654323334555665543311110 00 011135779999999
Q ss_pred HHhhcccc----C------c------ccCCC-eEEEecCC-CcccceeecCEEEEcCChhhhhHhhhcc-CCCCcccCCC
Q 018468 208 LSLSYSHD----G------R------SALEN-WSLCSSNQ-EKQSLGLSFDAVIMTAPLCNVKEMKITK-GGNLFPLDFL 268 (355)
Q Consensus 208 l~~~l~~~----~------~------~~~~~-~~V~~~~g-~~~~~~~~ad~VI~a~P~~~l~~l~~~~-~~~~~~~~~l 268 (355)
|+++|+.. + . ...++ ..|.+.++ .+..+++.||+||+|+|+..+.+|+ .. ..+++..+.+
T Consensus 234 l~~aL~~~~~~~G~~i~~~~~V~~I~~~~~~~~gv~~~~~~~~~~~~~~ad~VI~~~~~~~~~~ll-~~~~~~~~~~~~~ 312 (492)
T TIGR02733 234 LSDRLVEALKRDGGNLLTGQRVTAIHTKGGRAGWVVVVDSRKQEDLNVKADDVVANLPPQSLLELL-GPLGLPPGYRKRL 312 (492)
T ss_pred HHHHHHHHHHhcCCEEeCCceEEEEEEeCCeEEEEEEecCCCCceEEEECCEEEECCCHHHHHHhc-CcccCCHHHHHHH
Confidence 99887531 1 0 01121 12222232 1111378899999999999999985 22 2333444567
Q ss_pred CCCCCcceE-EEEEEecCCCCCCCC-CceEEEecCCCCCCCCceEEEEecCCCCCCCCCCCceEEEEEec
Q 018468 269 PEVIYMPLS-VIITTFKKENVRRPL-EGFGVLVPSKEQQNGLKTLGTLFSSMMFPDRVPKDLYLYTTFVG 336 (355)
Q Consensus 269 ~~~~~~~v~-~v~l~~~~~~~~~~~-~g~g~l~~~~~~~~~~~~~~~~~~s~~~~~~~p~~~~~l~~~~~ 336 (355)
+++++.+.. ++++.+++...+... ..+..+... . ...-+. .++..|..+|+|++++++++-
T Consensus 313 ~~~~~s~~~~~v~l~~~~~~~~~~~~~~~~~~~~~-~-----~~~~v~-~~~~d~~~aP~G~~~l~~~~~ 375 (492)
T TIGR02733 313 KKLPEPSGAFVFYLGVKRAALPVDCPPHLQFLSDH-Q-----GSLFVS-ISQEGDGRAPQGEATLIASSF 375 (492)
T ss_pred hcCCCCCceEEEEEeecccccCCCCCcceeeccCC-C-----ceEEEE-eCCccccCCCCCceEEEEEcC
Confidence 778877744 788999864321111 122222111 1 111111 233345677888877765554
No 28
>PTZ00363 rab-GDP dissociation inhibitor; Provisional
Probab=99.15 E-value=7e-09 Score=99.09 Aligned_cols=208 Identities=13% Similarity=0.127 Sum_probs=124.0
Q ss_pred CeeecCCCCCceEEEeec--------------------CCeEEcccCCeeecCcHHHHHHHHHcCCccccccccCCCceE
Q 018468 1 MVFEADERAGGKLRSISK--------------------DGLIWDEGANTMTESEMEVKGLLDDLGIREKQQFPISQYKRY 60 (355)
Q Consensus 1 ~vlEA~drvGGri~T~~~--------------------~g~~~d~G~~~~~~~~~~~~~l~~~lGl~~~~~~~~~~~~~~ 60 (355)
+++|++++.||+.+|... ..+.+|++++.+.... .+..++...|+...+-+... +..|
T Consensus 31 LhlD~n~~yGG~~as~~l~~l~~~f~~~~~~~~~~~~~r~~~iDL~Pk~l~~~G-~lv~lL~~s~v~ryleF~~l-~g~~ 108 (443)
T PTZ00363 31 LHMDRNPYYGGESASLNLTQLYKKFKPGETPPESLGRNRDWNVDLIPKFIMASG-ELVKILLHTDVTRYLEFKVI-DGSY 108 (443)
T ss_pred EEecCCCCcCcccccccHHHHHHhhcccCCCchhcccccccccccCCeeeecCC-hHHHHHhhcCccceeeeEEe-ceEE
Confidence 479999999999999832 2355888999766554 56788888999887666543 3567
Q ss_pred EE-ECCEEeecCCCchhhhhcccCChhHHHHHhccc---ccccCCCcccc-cCCCCCCCHHHHHHHh-hcHHHHH---HH
Q 018468 61 VV-RNGVPFLIPTNPIALLTSNFLSAQSKFQIILEP---FLWKKSDSAKV-SAEDAKESVGGFFQRH-FGREVVD---FL 131 (355)
Q Consensus 61 i~-~~g~~~~~p~~~~~~l~~~~ls~~~~~~~~~~~---~~~~~~~~~~~-~~~~~~~sv~~~l~~~-~~~~~~~---~~ 131 (355)
++ .+|+++++|.+..+.++.+++++.+|.++.+-. ......+.... ....+..|+.+|+++. +.+...+ ++
T Consensus 109 v~~~~g~~~~vP~s~~~~~~s~ll~l~eKr~l~kfl~~v~~~~~~~~~~~~~~~~d~~T~~d~L~~~~ls~~~~d~i~~~ 188 (443)
T PTZ00363 109 VYQKEGKIHKVPATDMEALSSPLMGFFEKNRCKNFLQYVSNYDENDPETHKGLNLKTMTMAQLYKKFGLEDNTIDFVGHA 188 (443)
T ss_pred EEecCCeEEECCCCHHHHhhCCCcchhhHHHHHHHHHHHHhhccCChhhhcccCcccCCHHHHHHHhCCCHHHHHHHHHH
Confidence 77 789999999988888988999999988765321 11111000000 0113468999999763 3343333 33
Q ss_pred hhhhhhccccCCcccchHHhhchHHHHHHHhhCchHHHHHHhhhhhhhhhhhhhcCchhhhcCCcceeEeCcchhhHHhh
Q 018468 132 IDPFVAGTSAGDPESLVMRHSFPELWNLEKRYGSVIAGAIKSKFSARKEKSAEAKGSSEKKRRQRGSFSFLGGMQVLSLS 211 (355)
Q Consensus 132 ~~p~~~~~~~~~~~~lS~~~~l~~l~~~~~~~gs~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~gG~~~l~~~ 211 (355)
+..+....|...+ +...+..+..... |+ .. ..........||++.|+++
T Consensus 189 ial~~~~~~~~~p----a~~tl~ri~~y~~---S~-----~~-------------------~g~~p~~yp~gG~g~L~qa 237 (443)
T PTZ00363 189 VALYTNDDYLNKP----AIETVMRIKLYMD---SL-----SR-------------------YGKSPFIYPLYGLGGLPQA 237 (443)
T ss_pred HHhhcccccccCC----HHHHHHHHHHHHH---HH-----hh-------------------ccCCcceeeCCCHHHHHHH
Confidence 3333222233323 2233322221111 11 00 0111234568999999988
Q ss_pred cccc----C------c------ccCCC--eEEEecCCCcccceeecCEEEEc
Q 018468 212 YSHD----G------R------SALEN--WSLCSSNQEKQSLGLSFDAVIMT 245 (355)
Q Consensus 212 l~~~----~------~------~~~~~--~~V~~~~g~~~~~~~~ad~VI~a 245 (355)
++.. + . ...++ +.|++.+|+ ++.|++||+.
T Consensus 238 l~r~~a~~Gg~~~L~~~V~~I~~~~~g~~~~V~~~~Ge----~i~a~~VV~~ 285 (443)
T PTZ00363 238 FSRLCAIYGGTYMLNTPVDEVVFDENGKVCGVKSEGGE----VAKCKLVICD 285 (443)
T ss_pred HHHHHHHcCcEEEcCCeEEEEEEcCCCeEEEEEECCCc----EEECCEEEEC
Confidence 7521 1 1 12223 557777775 8899999984
No 29
>TIGR02730 carot_isom carotene isomerase. Members of this family, including sll0033 (crtH) of Synechocystis sp. PCC 6803, catalyze a cis-trans isomerization of carotenes to the all-trans lycopene, a reaction that can also occur non-enzymatically in light through photoisomerization.
Probab=99.12 E-value=8.2e-09 Score=100.98 Aligned_cols=293 Identities=13% Similarity=0.077 Sum_probs=143.2
Q ss_pred CeeecCCCCCceEEEeecCCeEEcccCCeeecC----cH-HHHHHHHHcCCccccccccCCCceEEEECCEEeecCCCch
Q 018468 1 MVFEADERAGGKLRSISKDGLIWDEGANTMTES----EM-EVKGLLDDLGIREKQQFPISQYKRYVVRNGVPFLIPTNPI 75 (355)
Q Consensus 1 ~vlEA~drvGGri~T~~~~g~~~d~G~~~~~~~----~~-~~~~l~~~lGl~~~~~~~~~~~~~~i~~~g~~~~~p~~~~ 75 (355)
+|||+++.+||++.|++.+|+.+|.|++++... .+ .+.+++..+|....... ......+.+.+|..+.++.+..
T Consensus 27 ~vlE~~~~~GG~~~~~~~~G~~fd~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~g~~~~~~~d~~ 105 (493)
T TIGR02730 27 LVLERYLIPGGSAGYFEREGYRFDVGASMIFGFGDKGTTNLLTRALAAVGRKLETIP-DPVQIHYHLPNGLNVKVHREYD 105 (493)
T ss_pred EEEECCCCCCCceeEeccCCEEEEecchhheecCCcccccHHHHHHHHcCCcccccC-CCccEEEECCCCeeEeeecCHH
Confidence 589999999999999999999999999986532 22 35667777775433221 1111123233454455554433
Q ss_pred hhhhc--ccCChhH------HHHH-------hcc--cccccCCCc----c-c------ccCCCCCCCHHHHHHHhhcHHH
Q 018468 76 ALLTS--NFLSAQS------KFQI-------ILE--PFLWKKSDS----A-K------VSAEDAKESVGGFFQRHFGREV 127 (355)
Q Consensus 76 ~~l~~--~~ls~~~------~~~~-------~~~--~~~~~~~~~----~-~------~~~~~~~~sv~~~l~~~~~~~~ 127 (355)
.+... ..+ +.+ .+.. +.. .+.+..+.. . . .....-..|+.+|+++.+..+.
T Consensus 106 ~~~~~l~~~~-P~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~ 184 (493)
T TIGR02730 106 DFIQELVAKF-PHEKEGIRRFYDECWQVFNCLNSMELLSLEEPRYLFRVFFKHPLACLGLAKYLPQNAGDIARRYIRDPG 184 (493)
T ss_pred HHHHHHHHHC-chhHHHHHHHHHHHHHHHHHHHhhhhccccChHHHHHHHhhchhhhhHHHHHhhccHHHHHHHhcCCHH
Confidence 22110 000 000 0000 000 000000000 0 0 0000123678888877776666
Q ss_pred HHHHhhhhhhccccC-CcccchHHhhchHHHHHHHhhCchHHHHHHhhhhhhhhhhhhhcCchhhhcCCcceeEeCcchh
Q 018468 128 VDFLIDPFVAGTSAG-DPESLVMRHSFPELWNLEKRYGSVIAGAIKSKFSARKEKSAEAKGSSEKKRRQRGSFSFLGGMQ 206 (355)
Q Consensus 128 ~~~~~~p~~~~~~~~-~~~~lS~~~~l~~l~~~~~~~gs~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~gG~~ 206 (355)
.+.++...+.. ++. ++.+.++...+-.+ .. ....+.+.+.||++
T Consensus 185 l~~~l~~~~~~-~~~~p~~~~p~~~~~~~~---------------~~-------------------~~~~g~~~~~gG~~ 229 (493)
T TIGR02730 185 LLKFIDIECFC-WSVVPADQTPMINAGMVF---------------SD-------------------RHYGGINYPKGGVG 229 (493)
T ss_pred HHHHHHHHHHh-ccCCCcccchhhhHHHhh---------------cc-------------------cccceEecCCChHH
Confidence 66666543322 222 22444332221000 00 00113567889999
Q ss_pred hHHhhcccc----C------cc------cCC-CeEEEecCCCcccceeecCEEEEcCChhhhh-HhhhccC--CCCcccC
Q 018468 207 VLSLSYSHD----G------RS------ALE-NWSLCSSNQEKQSLGLSFDAVIMTAPLCNVK-EMKITKG--GNLFPLD 266 (355)
Q Consensus 207 ~l~~~l~~~----~------~~------~~~-~~~V~~~~g~~~~~~~~ad~VI~a~P~~~l~-~l~~~~~--~~~~~~~ 266 (355)
.+..+|... + .+ ..+ .+.|.+.+|. ++++|+||+++.+..+. .|+ ++ .++..+.
T Consensus 230 ~l~~~L~~~~~~~G~~i~~~~~V~~I~~~~~~~~gv~~~~g~----~~~ad~vV~a~~~~~~~~~Ll--~~~~~~~~~~~ 303 (493)
T TIGR02730 230 QIAESLVKGLEKHGGQIRYRARVTKIILENGKAVGVKLADGE----KIYAKRIVSNATRWDTFGKLL--KAENLPKKEKN 303 (493)
T ss_pred HHHHHHHHHHHHCCCEEEeCCeeeEEEecCCcEEEEEeCCCC----EEEcCEEEECCChHHHHHHhC--CccccchhhHH
Confidence 888776421 1 00 111 2345555664 78999999988665444 563 32 1222222
Q ss_pred CCCCCCCc-ceEEEEEEecCCCCCCCCCceEEEecCCCC-CCCCceEEEEecCCCCCCCCCCCceEEEEEec
Q 018468 267 FLPEVIYM-PLSVIITTFKKENVRRPLEGFGVLVPSKEQ-QNGLKTLGTLFSSMMFPDRVPKDLYLYTTFVG 336 (355)
Q Consensus 267 ~l~~~~~~-~v~~v~l~~~~~~~~~~~~g~g~l~~~~~~-~~~~~~~~~~~~s~~~~~~~p~~~~~l~~~~~ 336 (355)
.+++++++ +..++++..+.+..+........+.+.-+. ..+.+.+-+...+..-|..+|.|++++++++.
T Consensus 304 ~~~~~~~s~s~~~~~l~l~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~v~~ps~~dps~aP~G~~~i~~~~~ 375 (493)
T TIGR02730 304 WQRNYVKSPSFLSLHLGVKADVLPPGTECHHILLEDWTNLEKPQGTIFVSIPTLLDPSLAPEGHHIIHTFTP 375 (493)
T ss_pred HHhhccCCCceEEEEEEecCccCCCCCCccEEecchhhccCCCCCeEEEEeCCCCCCCCCcCCcEEEEEecC
Confidence 33444443 477889998874322111111222222110 00123333444454557788888888888774
No 30
>COG3349 Uncharacterized conserved protein [Function unknown]
Probab=98.93 E-value=1.1e-08 Score=96.58 Aligned_cols=153 Identities=22% Similarity=0.222 Sum_probs=107.6
Q ss_pred CeeecCCCCCceEEEeec-CCeEEcccCCeeecCcHHHHHHHHHcCCccccccccCCCceEEEEC---CEEe-------e
Q 018468 1 MVFEADERAGGKLRSISK-DGLIWDEGANTMTESEMEVKGLLDDLGIREKQQFPISQYKRYVVRN---GVPF-------L 69 (355)
Q Consensus 1 ~vlEA~drvGGri~T~~~-~g~~~d~G~~~~~~~~~~~~~l~~~lGl~~~~~~~~~~~~~~i~~~---g~~~-------~ 69 (355)
||+||++|+||++.|++. +|.+.|+|-|.|.+.|.++++++++++.++.++.-+. -..|+-.+ |.+- +
T Consensus 27 t~~ea~~~~GGk~~s~~~~dg~~~E~glh~f~~~Y~n~~~ll~~~~~~~~~~~~~~-~~~~~~~~~~~g~~~~~~~~~~p 105 (485)
T COG3349 27 TLYEARDRLGGKVASWRDSDGNHVEHGLHVFFGCYYNLLTLLKELPIEDRLQLREH-TKTFVGSGTRPGAIGRFARPDAP 105 (485)
T ss_pred EEEeccCccCceeeeeecCCCCeeeeeeEEechhHHHHHHHhhhCCchheeehHhh-hhhhcccCCCCCcccccccCCCC
Confidence 689999999999999986 7999999999999999999999999999875443221 12222121 2111 1
Q ss_pred cCC-CchhhhhcccCChhHHHHHhcccccc-cCCCcccccCCCCCCCHHHHHHHhh-cHHHHHHHhhhhhhccccCCccc
Q 018468 70 IPT-NPIALLTSNFLSAQSKFQIILEPFLW-KKSDSAKVSAEDAKESVGGFFQRHF-GREVVDFLIDPFVAGTSAGDPES 146 (355)
Q Consensus 70 ~p~-~~~~~l~~~~ls~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~sv~~~l~~~~-~~~~~~~~~~p~~~~~~~~~~~~ 146 (355)
.|. ....++..+.+.+++|++++...... . . .++...+.|+.|+.+||+++- ........+.|+..+....+++.
T Consensus 106 ~p~~~~~~~l~~~~~~~~~~~~~~~~l~~~~~-g-~~~~~~eld~~s~~d~l~~~g~~~~~~k~~~~~~~~~l~f~~~e~ 183 (485)
T COG3349 106 QPTNGLKAFLRLPQLPRREKIRFVLRLGDAPI-G-ADRSLRELDKISFADWLKEKGAREGAYKAAFAPIALALTFIDPEG 183 (485)
T ss_pred CcchhhhhhhhccccCHHHHhHHhhccccccc-h-hHHHHHHHhcccHHHHHHHhCCCchhHHHHHHHHHHhhcccCccc
Confidence 222 23455666778888888876543211 1 0 001114678999999999843 36778889999999988899999
Q ss_pred chHHhhchHH
Q 018468 147 LVMRHSFPEL 156 (355)
Q Consensus 147 lS~~~~l~~l 156 (355)
.|++..+..+
T Consensus 184 ~sa~~~lt~~ 193 (485)
T COG3349 184 CSARFFLTIL 193 (485)
T ss_pred CcchhHHHHH
Confidence 9998765444
No 31
>COG1233 Phytoene dehydrogenase and related proteins [Secondary metabolites biosynthesis, transport, and catabolism]
Probab=98.67 E-value=1.8e-07 Score=91.24 Aligned_cols=46 Identities=28% Similarity=0.559 Sum_probs=36.4
Q ss_pred CeeecCCCCCceEEEeecCCeEEcccCCeeecCcHHHHHHHHHcC-Ccc
Q 018468 1 MVFEADERAGGKLRSISKDGLIWDEGANTMTESEMEVKGLLDDLG-IRE 48 (355)
Q Consensus 1 ~vlEA~drvGGri~T~~~~g~~~d~G~~~~~~~~~~~~~l~~~lG-l~~ 48 (355)
+|||+++++|||++|.+.+||.+|.|++++..... ..++++|+ +..
T Consensus 30 ~VlE~~~~~GG~a~t~e~~Gf~fd~G~~~~~~~~~--~~~~~~l~~l~~ 76 (487)
T COG1233 30 TVLEKNDRVGGRARTFELDGFRFDTGPSWYLMPDP--GPLFRELGNLDA 76 (487)
T ss_pred EEEEecCCCCcceEEEeccceEeccCcceeecCch--HHHHHHhccCcc
Confidence 58999999999999999999999999987653322 25666666 544
No 32
>TIGR00031 UDP-GALP_mutase UDP-galactopyranose mutase. The gene is known as glf, ceoA, and rfbD. It is known experimentally in E. coli, Mycobacterium tuberculosis, and Klebsiella pneumoniae.
Probab=98.65 E-value=1.7e-07 Score=87.71 Aligned_cols=139 Identities=12% Similarity=0.099 Sum_probs=93.7
Q ss_pred CeeecCCCCCceEEEeecCCeE-EcccCCeeecCcHHHHHHHHHcC-CccccccccCCCceEEEECCEEeecCCCchhhh
Q 018468 1 MVFEADERAGGKLRSISKDGLI-WDEGANTMTESEMEVKGLLDDLG-IREKQQFPISQYKRYVVRNGVPFLIPTNPIALL 78 (355)
Q Consensus 1 ~vlEA~drvGGri~T~~~~g~~-~d~G~~~~~~~~~~~~~l~~~lG-l~~~~~~~~~~~~~~i~~~g~~~~~p~~~~~~l 78 (355)
+|+|+++++||++.|...+|+. .+.|+|+++..+..+++++.++- ... + .....++.+|+++++|.....+-
T Consensus 28 ~viEk~~~iGG~~~~~~~~g~~~~~~G~h~f~t~~~~v~~~~~~~~~~~~---~---~~~~~~~~~g~~~~~P~~~~~i~ 101 (377)
T TIGR00031 28 LVVEKRNHIGGNCYDEVDETILFHQYGPHIFHTNNQYVWDYISPFFELNN---Y---QHRVLALYNNLDLTLPFNFNQFR 101 (377)
T ss_pred EEEecCCCCCCceeeecCCCceEEeecceeEecCcHHHHHHHHhhccccc---e---eEEEEEEECCeEEccCCCHHHHH
Confidence 5899999999999998777755 49999999988888999988862 221 1 12356778999999997644332
Q ss_pred hcccCChhHHHHHhcccccccCCCcccccCCCCCCCHHHHH---HHhhcHHHHHHHhhhhhhccccCCcccchHHhh
Q 018468 79 TSNFLSAQSKFQIILEPFLWKKSDSAKVSAEDAKESVGGFF---QRHFGREVVDFLIDPFVAGTSAGDPESLVMRHS 152 (355)
Q Consensus 79 ~~~~ls~~~~~~~~~~~~~~~~~~~~~~~~~~~~~sv~~~l---~~~~~~~~~~~~~~p~~~~~~~~~~~~lS~~~~ 152 (355)
. ++... ..+.+.+.+....... ...+..++.+|. .+++|+.+.+.++.|+...+|+.+|+++++.++
T Consensus 102 ~--l~~~~-~~~~~~~~l~~~~~~~----~~~~~~~~~e~~d~~~~~~G~~lye~ff~~Yt~K~Wg~~p~el~~~~~ 171 (377)
T TIGR00031 102 K--LLGVK-DAQELQNFFNAQFKYG----DHVPLEELQEIADPDIQLLYQFLYQKVYKPYTVKQWGLPAEEIDPFVI 171 (377)
T ss_pred H--hcccc-hHHHHHHHHHHHhhcc----cCCCCCCHHHHHHHHHHHHHHHHHHHhccccCceeeCCChHHCCHHHe
Confidence 1 11111 1111222111000000 011123455555 889999999999999999999999999999876
No 33
>COG3380 Predicted NAD/FAD-dependent oxidoreductase [General function prediction only]
Probab=98.63 E-value=5.4e-08 Score=84.21 Aligned_cols=121 Identities=17% Similarity=0.227 Sum_probs=86.6
Q ss_pred CCCeEEEecCCCcccceeecCEEEEcCChhhhhHhhhc--cCCCCcccCCCCCCCCcceEEEEEEecCCCCCCCCCceEE
Q 018468 220 LENWSLCSSNQEKQSLGLSFDAVIMTAPLCNVKEMKIT--KGGNLFPLDFLPEVIYMPLSVIITTFKKENVRRPLEGFGV 297 (355)
Q Consensus 220 ~~~~~V~~~~g~~~~~~~~ad~VI~a~P~~~l~~l~~~--~~~~~~~~~~l~~~~~~~v~~v~l~~~~~~~~~~~~g~g~ 297 (355)
++.|++.+++|+ +...+|.||+|+|++.+..|+.. ...+.+++..+..+.|.|+..+.+.|..+. ..+.+| .
T Consensus 133 ~~~W~l~~~~g~---~~~~~d~vvla~PAPQ~~~LLt~~~~~~p~~l~~~~a~V~y~Pc~s~~lg~~q~l-~~P~~G--~ 206 (331)
T COG3380 133 DNDWTLHTDDGT---RHTQFDDVVLAIPAPQTATLLTTDADDLPAALRAALADVVYAPCWSAVLGYPQPL-DRPWPG--N 206 (331)
T ss_pred CCeeEEEecCCC---cccccceEEEecCCCcchhhcCcccccchHHHHHhhccceehhHHHHHhcCCccC-CCCCCC--c
Confidence 578999987764 37789999999999999999511 112223667889999999999999998653 234444 2
Q ss_pred EecCCCCCCCCceEEEEecCCCCCCCCCCCceEEEEEecCCCCccccCCCchHHhhc
Q 018468 298 LVPSKEQQNGLKTLGTLFSSMMFPDRVPKDLYLYTTFVGGSRNKELAKASTYKELQS 354 (355)
Q Consensus 298 l~~~~~~~~~~~~~~~~~~s~~~~~~~p~~~~~l~~~~~g~~~~~~~~~sd~e~~~~ 354 (355)
.+ +...++++--+..-+.+.|.+. ++++=.+..++++..+++++++++.
T Consensus 207 ~v-------dg~~laWla~d~sK~g~~p~~~-~~vvqasp~wSr~h~~~~~e~~i~~ 255 (331)
T COG3380 207 FV-------DGHPLAWLARDASKKGHVPDGE-IWVVQASPDWSREHLDHPAEQVIVA 255 (331)
T ss_pred cc-------CCCeeeeeeccccCCCCCCcCc-eEEEEeCchHHHHhhcCCHHHHHHH
Confidence 22 1235666654433456677654 6777788889999999999998753
No 34
>PF13450 NAD_binding_8: NAD(P)-binding Rossmann-like domain; PDB: 3KA7_A 1V0J_D 3INR_B 3KYB_B 3GF4_A 2BI8_A 3INT_B 1WAM_A 2BI7_A 3MJ4_G ....
Probab=98.33 E-value=4.9e-07 Score=62.99 Aligned_cols=44 Identities=34% Similarity=0.502 Sum_probs=39.4
Q ss_pred CeeecCCCCCceEEEeecCCeEEcccCCeeec--CcHHHHHHHHHc
Q 018468 1 MVFEADERAGGKLRSISKDGLIWDEGANTMTE--SEMEVKGLLDDL 44 (355)
Q Consensus 1 ~vlEA~drvGGri~T~~~~g~~~d~G~~~~~~--~~~~~~~l~~~l 44 (355)
+|||+++++||+++|.+.+|+.+|.|+++|.. .++++.+++++|
T Consensus 23 ~v~E~~~~~GG~~~~~~~~g~~~d~g~~~~~~~~~~~~~~~l~~~L 68 (68)
T PF13450_consen 23 TVFEKNDRLGGRARSFRIPGYRFDLGAHYFFPPDDYPNLFRLLREL 68 (68)
T ss_dssp EEEESSSSSSGGGCEEEETTEEEETSS-SEEETTSCHHHHHHHHTT
T ss_pred EEEecCcccCcceeEEEECCEEEeeccEEEeCCCCchHHHHHHcCC
Confidence 58999999999999999999999999999886 468999999886
No 35
>COG0562 Glf UDP-galactopyranose mutase [Cell envelope biogenesis, outer membrane]
Probab=97.99 E-value=3.9e-05 Score=68.40 Aligned_cols=139 Identities=13% Similarity=0.194 Sum_probs=95.7
Q ss_pred CeeecCCCCCceEEEeec--CCeE-EcccCCeeecCcHHHHHHHHHcCCccccccccCCCceEEEECCEEeecCCCchhh
Q 018468 1 MVFEADERAGGKLRSISK--DGLI-WDEGANTMTESEMEVKGLLDDLGIREKQQFPISQYKRYVVRNGVPFLIPTNPIAL 77 (355)
Q Consensus 1 ~vlEA~drvGGri~T~~~--~g~~-~d~G~~~~~~~~~~~~~l~~~lGl~~~~~~~~~~~~~~i~~~g~~~~~p~~~~~~ 77 (355)
.|+|+|+.+||.+.+... .|+. =-.|||.|+..+..+++++..+= .+..-..+.+-+.+|..+++|.++..+
T Consensus 28 LIvekR~HIGGNaYde~d~~tGIlvHkYGpHIFHT~~~~Vwdyv~~F~-----e~~~Y~hrVla~~ng~~~~lP~nl~ti 102 (374)
T COG0562 28 LIVEKRNHIGGNAYDEADDQTGILVHKYGPHIFHTDNKRVWDYVNQFT-----EFNPYQHRVLALVNGQLYPLPFNLNTI 102 (374)
T ss_pred EEEeccccCCCccccccCCCCCeEEeeccCceeecCchHHHHHHhhhh-----hhhhhccceeEEECCeeeeccccHHHH
Confidence 489999999999999976 5754 56899999998899999998751 121122234556799999999876543
Q ss_pred hh--cccCChhHHHHHhcccccccCCCcccccCCCCCCCHHHHHHHhhcHHHHHHHhhhhhhccccCCcccchHHhh
Q 018468 78 LT--SNFLSAQSKFQIILEPFLWKKSDSAKVSAEDAKESVGGFFQRHFGREVVDFLIDPFVAGTSAGDPESLVMRHS 152 (355)
Q Consensus 78 l~--~~~ls~~~~~~~~~~~~~~~~~~~~~~~~~~~~~sv~~~l~~~~~~~~~~~~~~p~~~~~~~~~~~~lS~~~~ 152 (355)
-. ...+++. ..+.+.+.... .. ...+-.++++=..+.+|+.+.++++.++....|+.+|+++.+...
T Consensus 103 ~ql~G~~~~p~-~a~~~i~~~~~-~~------~~~~~q~~ee~ais~vg~~LY~~f~kgYT~KQWG~~p~eLpasvi 171 (374)
T COG0562 103 NQLFGKNFTPD-EARKFIEEQAA-EI------DIAEPQNLEEQAISLVGRDLYEAFFKGYTEKQWGLDPKELPASVI 171 (374)
T ss_pred HHHhCccCCHH-HHHHHHHHhhc-cc------cccchhhhhhHHHHHHHHHHHHHHhccccHHHhCCChHHCCHHHh
Confidence 21 1122222 12222221111 11 234567788888888999999999999999999999999976543
No 36
>PRK13977 myosin-cross-reactive antigen; Provisional
Probab=97.80 E-value=8.1e-05 Score=72.71 Aligned_cols=144 Identities=10% Similarity=0.063 Sum_probs=82.1
Q ss_pred CeeecCCCCCceEEEee--cCCeEEcccCCeeecCcHHHHHHHHHcCCccccccccCCCceEEEEC-CEE---eecCCCc
Q 018468 1 MVFEADERAGGKLRSIS--KDGLIWDEGANTMTESEMEVKGLLDDLGIREKQQFPISQYKRYVVRN-GVP---FLIPTNP 74 (355)
Q Consensus 1 ~vlEA~drvGGri~T~~--~~g~~~d~G~~~~~~~~~~~~~l~~~lGl~~~~~~~~~~~~~~i~~~-g~~---~~~p~~~ 74 (355)
+|||+.+++||+++++. .+|+.++.|++ +...++.++++++++.-....-. +.....+.+.. +.. .++....
T Consensus 53 tIlEk~~~~GG~~~~~~~~~~Gy~~~~G~~-~~~~y~~l~~ll~~ipsle~~g~-sv~dd~~~~~~~~p~~s~~Rl~~~~ 130 (576)
T PRK13977 53 TILEELDVPGGSLDGAGNPEKGYVARGGRE-MENHFECLWDLFRSIPSLEDPGA-SVLDEFYWFNKDDPNYSKARLIHKR 130 (576)
T ss_pred EEEeCCCCCCCCccCcccccCCEEEECCCC-ccchHHHHHHHHHhccccCCCCc-ccccceeeeecCCcccceeeEEcCC
Confidence 58999999999999864 67999999987 56778999999988732110000 00000000000 000 0110000
Q ss_pred hhhhhcccCChhHHH--HHhcccccccCCCcccccCCCCCCCHHHHHHHhhcHHHHHHHhhhhhhccccCCcccchHHhh
Q 018468 75 IALLTSNFLSAQSKF--QIILEPFLWKKSDSAKVSAEDAKESVGGFFQRHFGREVVDFLIDPFVAGTSAGDPESLVMRHS 152 (355)
Q Consensus 75 ~~~l~~~~ls~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~sv~~~l~~~~~~~~~~~~~~p~~~~~~~~~~~~lS~~~~ 152 (355)
...+....+++..|. .++...+. .. ...++.++.||+.++|-+.....++.++ ++-. ...|+..+
T Consensus 131 g~~~d~~~~~L~~k~r~~Ll~l~l~-~e-------~~Ld~~tI~d~f~~~Ff~t~Fw~~w~t~----FaF~-~whSA~E~ 197 (576)
T PRK13977 131 GEILDTDKFGLSKKDRKELLKLLLT-PE-------EKLDDKTIEDWFSPEFFETNFWYYWRTM----FAFE-KWHSALEM 197 (576)
T ss_pred CCEEECcCCCCCHHHHHHHHHHhcc-CH-------HHhCCcCHHHHHhhcCchhHHHHHHHHH----HCCc-hhhHHHHH
Confidence 011112223333333 33333332 11 4678999999999988766666677766 4444 67888888
Q ss_pred chHHHHH
Q 018468 153 FPELWNL 159 (355)
Q Consensus 153 l~~l~~~ 159 (355)
..++.++
T Consensus 198 rry~~rf 204 (576)
T PRK13977 198 RRYMHRF 204 (576)
T ss_pred HHHHHHH
Confidence 7766554
No 37
>PF00996 GDI: GDP dissociation inhibitor; InterPro: IPR018203 Rab proteins constitute a family of small GTPases that serve a regulatory role in vesicular membrane traffic [, ]; C-terminal geranylgeranylation is crucial for their membrane association and function. This post-translational modification is catalysed by Rab geranylgeranyl transferase (Rab-GGTase), a multi-subunit enzyme that contains a catalytic heterodimer and an accessory component, termed Rab escort protein (REP)-1 []. REP-1 presents newly- synthesised Rab proteins to the catalytic component, and forms a stable complex with the prenylated proteins following the transfer reaction. The mechanism of REP-1-mediated membrane association of Rab5 is similar to that mediated by Rab GDP dissociation inhibitor (GDI). REP-1 and Rab GDI also share other functional properties, including the ability to inhibit the release of GDP and to remove Rab proteins from membranes. The crystal structure of the bovine alpha-isoform of Rab GDI has been determined to a resolution of 1.81A []. The protein is composed of two main structural units: a large complex multi-sheet domain I, and a smaller alpha-helical domain II. The structural organisation of domain I is closely related to FAD-containing monooxygenases and oxidases []. Conserved regions common to GDI and the choroideraemia gene product, which delivers Rab to catalytic subunits of Rab geranylgeranyltransferase II, are clustered on one face of the domain []. The two most conserved regions form a compact structure at the apex of the molecule; site-directed mutagenesis has shown these regions to play a critical role in the binding of Rab proteins [].; PDB: 1VG9_C 1VG0_A 1LTX_R 3P1W_A 3CPH_H 3CPJ_G 3CPI_H 1UKV_G 2BCG_G 1GND_A ....
Probab=97.32 E-value=0.0046 Score=59.00 Aligned_cols=273 Identities=16% Similarity=0.186 Sum_probs=137.5
Q ss_pred eeecCCCCCceEEEeec---------------------CCeEEcccCCeeecCcHHHHHHHHHcCCccccccccCCCceE
Q 018468 2 VFEADERAGGKLRSISK---------------------DGLIWDEGANTMTESEMEVKGLLDDLGIREKQQFPISQYKRY 60 (355)
Q Consensus 2 vlEA~drvGGri~T~~~---------------------~g~~~d~G~~~~~~~~~~~~~l~~~lGl~~~~~~~~~~~~~~ 60 (355)
.+++.+..||...|... ..+.+|+-|..+... ..+.+++-.-|+...+-|... ...|
T Consensus 32 hiD~n~yYGg~~asl~l~~l~~~~~~~~~~~~~~~~~sR~ynIDL~PKll~a~-g~LV~lLi~S~V~rYLEFk~V-~~~~ 109 (438)
T PF00996_consen 32 HIDRNDYYGGEWASLNLDQLYEWFRPKQWTPPESLGRSRDYNIDLIPKLLYAR-GPLVKLLISSGVTRYLEFKAV-DGSY 109 (438)
T ss_dssp EE-SSSSSCGGG-EE-HHHHHHHHCCTCCHHHHHHHTGGGC-EESS--BEETT-SHHHHHHHHCTGGGGSEEEEE-SEEE
T ss_pred ecCCCCCcCCchhcccHHHHHHHhhccccccccccccccceeEecchHhhhcc-CHHHHHHHhCCcccceEEEEc-ceeE
Confidence 36777888888777631 247899999977655 457788878888877666443 3578
Q ss_pred EEECCEEeecCCCchhhhhcccCChhHHHHHhccc---ccccCCCccc-ccCCCCCCCHHHHHHHhhc--HHHHHHHhhh
Q 018468 61 VVRNGVPFLIPTNPIALLTSNFLSAQSKFQIILEP---FLWKKSDSAK-VSAEDAKESVGGFFQRHFG--REVVDFLIDP 134 (355)
Q Consensus 61 i~~~g~~~~~p~~~~~~l~~~~ls~~~~~~~~~~~---~~~~~~~~~~-~~~~~~~~sv~~~l~~~~~--~~~~~~~~~p 134 (355)
+|.+|+++++|.+-.+.+++++++..+|-++.+-. ..+...+... ......+.++.+++.. ++ +...+.+...
T Consensus 110 v~~~~~l~kVP~sr~dvf~s~~lsl~eKR~lmkFl~~v~~~~~~~~~~~~~~~~~~~~~~e~~~~-f~L~~~~~~~i~ha 188 (438)
T PF00996_consen 110 VYKNGKLHKVPCSREDVFKSKLLSLFEKRRLMKFLKFVANYEEDDPSTHKGLDPEKKTFQELLKK-FGLSENLIDFIGHA 188 (438)
T ss_dssp EEETTEEEE--SSHHHHHC-TTS-HHHHHHHHHHHHHHHHGCTTBGGGSTTG-TTTSBHHHHHHH-TTS-HHHHHHHHHH
T ss_pred EEeCCEEeeCCCCHHHhhcCCCccHHHHHHHHHHHHHHhhcccCCcchhhccccccccHHHHHHh-cCCCHHHHHHHHHh
Confidence 99999999999999999999999999987764421 1111111100 0012347899999974 44 4444433322
Q ss_pred hhhccccCCcc-cchHHhhchHHHHHHHhhCchHHHHHHhhhhhhhhhhhhhcCchhhhcCCcceeEeCcchhhHHhhcc
Q 018468 135 FVAGTSAGDPE-SLVMRHSFPELWNLEKRYGSVIAGAIKSKFSARKEKSAEAKGSSEKKRRQRGSFSFLGGMQVLSLSYS 213 (355)
Q Consensus 135 ~~~~~~~~~~~-~lS~~~~l~~l~~~~~~~gs~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~gG~~~l~~~l~ 213 (355)
+ +++..+.. +-++...++.+....+..|. .++.+...+..|.+.|++++.
T Consensus 189 i--aL~~~~~~~~~p~~~~l~ri~~yl~Slgr---------------------------yG~sPfLyP~YG~GELpQ~Fc 239 (438)
T PF00996_consen 189 I--ALSLDDSYLTEPAREGLERIKLYLSSLGR---------------------------YGKSPFLYPLYGLGELPQAFC 239 (438)
T ss_dssp T--S-SSSSGGGGSBSHHHHHHHHHHHHHHCC---------------------------CSSSSEEEETT-TTHHHHHHH
T ss_pred h--hhccCcccccccHHHHHHHHHHHHHHHhc---------------------------cCCCCEEEEccCCccHHHHHH
Confidence 2 22222211 22344455544433221111 122346678889999998753
Q ss_pred c----cC------c------ccCCCeEEEe-cCCCcccceeecCEEEEcCChhhhhHhhhccCCCCcccCCCCCCCCcce
Q 018468 214 H----DG------R------SALENWSLCS-SNQEKQSLGLSFDAVIMTAPLCNVKEMKITKGGNLFPLDFLPEVIYMPL 276 (355)
Q Consensus 214 ~----~~------~------~~~~~~~V~~-~~g~~~~~~~~ad~VI~a~P~~~l~~l~~~~~~~~~~~~~l~~~~~~~v 276 (355)
+ -| . .+.++..+.+ ++|+ ++.|++||+. |. - ++ +. .+ +.+.|
T Consensus 240 Rl~AV~GG~Y~L~~~i~~i~~~~~g~~~gV~s~ge----~v~~k~vI~d-ps-----y--~p----~~---v~--~~~~V 298 (438)
T PF00996_consen 240 RLSAVYGGTYMLNRPIDEIVVDEDGKVIGVKSEGE----VVKAKKVIGD-PS-----Y--LP----EK---VK--KTGQV 298 (438)
T ss_dssp HHHHHTT-EEESS--EEEEEEETTTEEEEEEETTE----EEEESEEEEE-GG-----G--BG----CG---EE--EEEEE
T ss_pred HHhhhcCcEEEeCCccceeeeecCCeEEEEecCCE----EEEcCEEEEC-Cc-----c--Cc----cc---cc--ccceE
Confidence 2 11 1 1123433222 3443 8999999964 22 1 11 00 00 13356
Q ss_pred EEEEEEecCCCCCCC-CCceEEEecCCCC--CCCCceEEEEecCCCCCCCCCCCceEE
Q 018468 277 SVIITTFKKENVRRP-LEGFGVLVPSKEQ--QNGLKTLGTLFSSMMFPDRVPKDLYLY 331 (355)
Q Consensus 277 ~~v~l~~~~~~~~~~-~~g~g~l~~~~~~--~~~~~~~~~~~~s~~~~~~~p~~~~~l 331 (355)
....+..+.+.-... ....-+++|..+. +++..++.+-.++. .+|+|.+++
T Consensus 299 ~RaI~Il~~pi~~t~~~~s~~IiiP~~~~~~~~dIyv~~~ss~~~----~CP~G~yi~ 352 (438)
T PF00996_consen 299 SRAICILDHPIPNTEDASSVQIIIPQSQVGRKSDIYVLQLSSSTG----VCPKGQYIA 352 (438)
T ss_dssp EEEEEEESS-STTSTT-SSEEEEE-GGGCTSSS-EEEEEEEGGGT----SS-TT-EEE
T ss_pred EEEEEEEcCCCCCCCCCceEEEecCCcccCCCCCeEEEEECCCcc----ccCCCcEEE
Confidence 666667776542211 1223355676542 12233334444443 467776543
No 38
>PF07156 Prenylcys_lyase: Prenylcysteine lyase; InterPro: IPR010795 This entry represents a conserved region found in a group of prenylcysteine lyases (1.8.3.5 from EC) that are approximately 500 residues long. Prenylcysteine lyase is a FAD-dependent thioether oxidase that degrades a variety of prenylcysteines, producing free cysteine, an isoprenoid aldehyde and hydrogen peroxide as products of the reaction []. It has been noted that this enzyme has considerable homology with ClP55, a 55 kDa protein that is associated with chloride ion pumps [].; GO: 0016670 oxidoreductase activity, acting on a sulfur group of donors, oxygen as acceptor, 0030328 prenylcysteine catabolic process, 0055114 oxidation-reduction process
Probab=96.00 E-value=0.032 Score=52.27 Aligned_cols=104 Identities=11% Similarity=0.153 Sum_probs=65.8
Q ss_pred CCCHHHHHHHh-hcHHHHHHHhhhhhhccccCCcccchHHhhchHHHHHHHhhCchHHHHHHhhhhhhhhhhhhhcCchh
Q 018468 112 KESVGGFFQRH-FGREVVDFLIDPFVAGTSAGDPESLVMRHSFPELWNLEKRYGSVIAGAIKSKFSARKEKSAEAKGSSE 190 (355)
Q Consensus 112 ~~sv~~~l~~~-~~~~~~~~~~~p~~~~~~~~~~~~lS~~~~l~~l~~~~~~~gs~~~g~~~~~~~~~~~~~~~~~~~~~ 190 (355)
..|.++|+.++ +++.+.+.++.+..+.-|+.+. ++++.. |+....
T Consensus 69 ~~t~~e~L~~~gi~~~fi~Elv~a~tRvNYgQ~~-~i~a~~-----------------G~vSla---------------- 114 (368)
T PF07156_consen 69 KVTGEEYLKENGISERFINELVQAATRVNYGQNV-NIHAFA-----------------GLVSLA---------------- 114 (368)
T ss_pred HHHHHHHHHHCCCCHHHHHHHHHhheEeeccccc-chhhhh-----------------hheeee----------------
Confidence 56899999874 6799999999999999999863 444322 111110
Q ss_pred hhcCCcceeEeCcchhhHHhhcccc------C-----c--ccCCC---eEEEecCCCcccceeecCEEEEcCChhhhh
Q 018468 191 KKRRQRGSFSFLGGMQVLSLSYSHD------G-----R--SALEN---WSLCSSNQEKQSLGLSFDAVIMTAPLCNVK 252 (355)
Q Consensus 191 ~~~~~~~~~~~~gG~~~l~~~l~~~------~-----~--~~~~~---~~V~~~~g~~~~~~~~ad~VI~a~P~~~l~ 252 (355)
+...+.++++||..++...|-.. + . +..++ +.|++.++. ......||.||+|+|+....
T Consensus 115 --~a~~gl~sV~GGN~qI~~~ll~~S~A~vl~~~Vt~I~~~~~~~~~~y~v~~~~~~-~~~~~~yD~VVIAtPl~~~~ 189 (368)
T PF07156_consen 115 --GATGGLWSVEGGNWQIFEGLLEASGANVLNTTVTSITRRSSDGYSLYEVTYKSSS-GTESDEYDIVVIATPLQQSF 189 (368)
T ss_pred --eccCCceEecCCHHHHHHHHHHHccCcEecceeEEEEeccCCCceeEEEEEecCC-CCccccCCEEEECCCccccc
Confidence 11224689999999988765321 1 1 11222 456554432 11244689999999996544
No 39
>KOG1439 consensus RAB proteins geranylgeranyltransferase component A (RAB escort protein) [Posttranslational modification, protein turnover, chaperones]
Probab=94.02 E-value=0.21 Score=46.44 Aligned_cols=71 Identities=17% Similarity=0.199 Sum_probs=53.5
Q ss_pred eEEcccCCeeecCcHHHHHHHHHcCCccccccccCCCceEEEECCEEeecCCCchhhhhcccCChhHHHHHhc
Q 018468 21 LIWDEGANTMTESEMEVKGLLDDLGIREKQQFPISQYKRYVVRNGVPFLIPTNPIALLTSNFLSAQSKFQIIL 93 (355)
Q Consensus 21 ~~~d~G~~~~~~~~~~~~~l~~~lGl~~~~~~~~~~~~~~i~~~g~~~~~p~~~~~~l~~~~ls~~~~~~~~~ 93 (355)
+.+|+=|..+... ..+..++-+-|+...+-+... ...|+|.+|+.+++|......+++++++..+|-++.+
T Consensus 72 ~nvDLiPK~lmAn-~~Lvk~Li~T~V~~YL~fk~i-~gsfv~~~~k~~KVP~t~~Ea~~s~lmgl~eKrr~~k 142 (440)
T KOG1439|consen 72 WNVDLIPKFLMAN-GELVKILIHTGVTRYLEFKSI-SGSFVYKKGKIYKVPATEAEALTSPLMGLFEKRRVMK 142 (440)
T ss_pred cchhhchHhhhcc-chHHHHHHHhchhhheEEEee-cceEEEECCeEEECCCCHHHHhcCCccchhHHHHHHH
Confidence 5577777755544 456677777788776655443 4578899999999999888889999999998876654
No 40
>KOG4254 consensus Phytoene desaturase [Coenzyme transport and metabolism]
Probab=92.66 E-value=1.6 Score=41.58 Aligned_cols=136 Identities=10% Similarity=0.069 Sum_probs=75.4
Q ss_pred eeEeCcchhhHHhhcccc----C-----------cccCCC--eEEEecCCCcccceeecCEEEE-cCChhhhhHhhhccC
Q 018468 198 SFSFLGGMQVLSLSYSHD----G-----------RSALEN--WSLCSSNQEKQSLGLSFDAVIM-TAPLCNVKEMKITKG 259 (355)
Q Consensus 198 ~~~~~gG~~~l~~~l~~~----~-----------~~~~~~--~~V~~~~g~~~~~~~~ad~VI~-a~P~~~l~~l~~~~~ 259 (355)
..++.|||+.+..+++.- + ...++| +-|+..||. ++.+..||+ |+|.....+|+ -.+
T Consensus 256 ~~Yp~GG~Gavs~aia~~~~~~GaeI~tka~Vq~Illd~gka~GV~L~dG~----ev~sk~VvSNAt~~~Tf~kLl-p~e 330 (561)
T KOG4254|consen 256 WGYPRGGMGAVSFAIAEGAKRAGAEIFTKATVQSILLDSGKAVGVRLADGT----EVRSKIVVSNATPWDTFEKLL-PGE 330 (561)
T ss_pred ccCCCCChhHHHHHHHHHHHhccceeeehhhhhheeccCCeEEEEEecCCc----EEEeeeeecCCchHHHHHHhC-CCc
Confidence 457899999998876521 1 011123 456677886 888888887 45555666775 233
Q ss_pred CCCcccCCCCCCCCcc-eEE----EEEEecCC-CCCCCCCceE-EEecCCC-------------CCCCCceEEEEecCCC
Q 018468 260 GNLFPLDFLPEVIYMP-LSV----IITTFKKE-NVRRPLEGFG-VLVPSKE-------------QQNGLKTLGTLFSSMM 319 (355)
Q Consensus 260 ~~~~~~~~l~~~~~~~-v~~----v~l~~~~~-~~~~~~~g~g-~l~~~~~-------------~~~~~~~~~~~~~s~~ 319 (355)
.+|+.. .++++.+.+ +.+ .+++.+.. ..+-+-.++. .+.++.. ...+.+++-..+.|..
T Consensus 331 ~LPeef-~i~q~d~~spv~k~~~psFl~~~~~~~~plph~~~~i~~~~ed~~~~H~~v~D~~~gl~s~~pvI~~siPS~l 409 (561)
T KOG4254|consen 331 ALPEEF-VIQQLDTVSPVTKDKLPSFLCLPNTKSLPLPHHGYTIHYNAEDTQAHHRAVEDPRNGLASHRPVIELSIPSSL 409 (561)
T ss_pred cCCchh-hhhhcccccccccccCcceeecCCCCCCCCCccceeEEecCchHHHHHHHHhChhhcccccCCeEEEeccccc
Confidence 445443 445554432 222 23333221 1111112221 2222211 1124577778888888
Q ss_pred CCCCCCCCceEEEEEecCCC
Q 018468 320 FPDRVPKDLYLYTTFVGGSR 339 (355)
Q Consensus 320 ~~~~~p~~~~~l~~~~~g~~ 339 (355)
.|.-+|++++++..|..+..
T Consensus 410 Dptlappg~Hvl~lf~~~t~ 429 (561)
T KOG4254|consen 410 DPTLAPPGKHVLHLFTQYTP 429 (561)
T ss_pred CCCcCCCCceEEEEeccCCc
Confidence 88888888999999887643
No 41
>COG5044 MRS6 RAB proteins geranylgeranyltransferase component A (RAB escort protein) [Posttranslational modification, protein turnover, chaperones]
Probab=88.83 E-value=1.9 Score=39.94 Aligned_cols=101 Identities=19% Similarity=0.245 Sum_probs=65.8
Q ss_pred eEEcccCCeeecCcHHHHHHHHHcCCccccccccCCCceEEEECCEEeecCCCchhhhhcccCChhHHHHHhccc-c--c
Q 018468 21 LIWDEGANTMTESEMEVKGLLDDLGIREKQQFPISQYKRYVVRNGVPFLIPTNPIALLTSNFLSAQSKFQIILEP-F--L 97 (355)
Q Consensus 21 ~~~d~G~~~~~~~~~~~~~l~~~lGl~~~~~~~~~~~~~~i~~~g~~~~~p~~~~~~l~~~~ls~~~~~~~~~~~-~--~ 97 (355)
+.+|+=|..+... ..+..++-+-|+...+.+... ...|+|.+|+.+++|.+-..++.+++++..+|-++.+-. | .
T Consensus 73 ~~iDL~PK~l~A~-s~l~~iLi~t~v~~YLefk~i-~~~~~~~~~k~~kVP~ne~ei~~s~~lsL~eKr~vmrFl~~V~n 150 (434)
T COG5044 73 LNIDLIPKFLFAN-SELLKILIETGVTEYLEFKQI-SGSFLYRPGKIYKVPYNEAEIFTSPLLSLFEKRRVMRFLKWVSN 150 (434)
T ss_pred cchhhchhhhccc-chHHHHHHHhChHhheeeeec-cccEEecCCcEEECCccHHhhhcCCCcchhhHHHHHHHHHHHHh
Confidence 5577778765543 467788888888876655443 357788889999999988888888999998887654432 1 1
Q ss_pred ccCCCcccccCCCCCCCHHHHHHHhhc
Q 018468 98 WKKSDSAKVSAEDAKESVGGFFQRHFG 124 (355)
Q Consensus 98 ~~~~~~~~~~~~~~~~sv~~~l~~~~~ 124 (355)
+.. +....-....+.+..+++...|+
T Consensus 151 ~~~-~~~~~~~~~e~k~~~~~~~ekf~ 176 (434)
T COG5044 151 YAE-QKSTLQELYESKDTMEFLFEKFG 176 (434)
T ss_pred HHh-hhhhchhhhhcccHHHHHHHHHc
Confidence 111 10000012234567788887776
No 42
>PF13454 NAD_binding_9: FAD-NAD(P)-binding
Probab=61.38 E-value=10 Score=30.75 Aligned_cols=25 Identities=12% Similarity=0.357 Sum_probs=20.6
Q ss_pred cCCCeEEEecCCCcccceeecCEEEEcCC
Q 018468 219 ALENWSLCSSNQEKQSLGLSFDAVIMTAP 247 (355)
Q Consensus 219 ~~~~~~V~~~~g~~~~~~~~ad~VI~a~P 247 (355)
.++++.|.+.+|. .+.||+||+|+-
T Consensus 130 ~~~~~~v~~~~g~----~~~~d~VvLa~G 154 (156)
T PF13454_consen 130 DDDGYRVVTADGQ----SIRADAVVLATG 154 (156)
T ss_pred cCCcEEEEECCCC----EEEeCEEEECCC
Confidence 4567888888886 889999999974
No 43
>PF06100 Strep_67kDa_ant: Streptococcal 67 kDa myosin-cross-reactive antigen like family ; InterPro: IPR010354 Members of this family are thought to have structural features in common with the beta chain of the class II antigens, as well as myosin, and may play an important role in the pathogenesis [].
Probab=59.34 E-value=48 Score=32.39 Aligned_cols=43 Identities=21% Similarity=0.291 Sum_probs=31.3
Q ss_pred CeeecCCCCCceEEEeec--CCeEEcccCCeeecCcHHHHHHHHHc
Q 018468 1 MVFEADERAGGKLRSISK--DGLIWDEGANTMTESEMEVKGLLDDL 44 (355)
Q Consensus 1 ~vlEA~drvGGri~T~~~--~g~~~d~G~~~~~~~~~~~~~l~~~l 44 (355)
+|||+.+..||-+..... .|+++=-|-+ ....+..+++|++..
T Consensus 33 hIlE~~~~~GGsldg~g~~~~GYv~RgGR~-~~~~~eclwdLls~I 77 (500)
T PF06100_consen 33 HILEELDVPGGSLDGAGDPENGYVIRGGRM-MEFHYECLWDLLSSI 77 (500)
T ss_pred EEEeCCCCCCCcccCCCCCCCCeeecCCcc-ccchhHHHHHHHHhC
Confidence 589999999999988743 5776654444 455667788888664
No 44
>PF13738 Pyr_redox_3: Pyridine nucleotide-disulphide oxidoreductase; PDB: 3D1C_A 4A9W_B 2YLX_A 2YM2_A 2YLW_A 2YLR_A 2YM1_A 2YLS_A 1W4X_A 2YLT_A ....
Probab=42.34 E-value=24 Score=29.55 Aligned_cols=27 Identities=11% Similarity=0.348 Sum_probs=18.9
Q ss_pred cCCCeEEEecCCCcccceeecCEEEEcCChh
Q 018468 219 ALENWSLCSSNQEKQSLGLSFDAVIMTAPLC 249 (355)
Q Consensus 219 ~~~~~~V~~~~g~~~~~~~~ad~VI~a~P~~ 249 (355)
..++|.|++.++. ++.||+||+|+-..
T Consensus 111 ~~~~w~v~~~~~~----~~~a~~VVlAtG~~ 137 (203)
T PF13738_consen 111 DGDGWTVTTRDGR----TIRADRVVLATGHY 137 (203)
T ss_dssp ETTTEEEEETTS-----EEEEEEEEE---SS
T ss_pred eccEEEEEEEecc----eeeeeeEEEeeecc
Confidence 3566999998874 88999999998853
No 45
>PRK06444 prephenate dehydrogenase; Provisional
Probab=28.92 E-value=78 Score=26.89 Aligned_cols=18 Identities=11% Similarity=0.200 Sum_probs=16.2
Q ss_pred ecCEEEEcCChhhhhHhh
Q 018468 238 SFDAVIMTAPLCNVKEMK 255 (355)
Q Consensus 238 ~ad~VI~a~P~~~l~~l~ 255 (355)
.||-||+++|...+..++
T Consensus 31 ~~DlVilavPv~~~~~~i 48 (197)
T PRK06444 31 KADHAFLSVPIDAALNYI 48 (197)
T ss_pred CCCEEEEeCCHHHHHHHH
Confidence 489999999999998884
No 46
>PF03807 F420_oxidored: NADP oxidoreductase coenzyme F420-dependent; InterPro: IPR004455 The function of F420-dependent NADP reductase is the transfer of electrons from reduced coenzyme F420 into an electron transport chain. It catalyses the reduction of F420 with NADP(+) and the reduction of NADP(+) with F420H(2).; GO: 0016491 oxidoreductase activity, 0055114 oxidation-reduction process; PDB: 2IZZ_B 2GR9_B 2GRA_B 2GER_C 2AMF_E 2AHR_C 2VQ3_B 2VNS_B 2RCY_D 2YJZ_D ....
Probab=20.12 E-value=86 Score=22.50 Aligned_cols=18 Identities=22% Similarity=0.248 Sum_probs=14.5
Q ss_pred ecCEEEEcCChhhhhHhh
Q 018468 238 SFDAVIMTAPLCNVKEMK 255 (355)
Q Consensus 238 ~ad~VI~a~P~~~l~~l~ 255 (355)
.+|.||+++|+..+..++
T Consensus 61 ~advvilav~p~~~~~v~ 78 (96)
T PF03807_consen 61 EADVVILAVKPQQLPEVL 78 (96)
T ss_dssp HTSEEEE-S-GGGHHHHH
T ss_pred cCCEEEEEECHHHHHHHH
Confidence 599999999999999984
Done!