Query 018468
Match_columns 355
No_of_seqs 163 out of 1531
Neff 9.4
Searched_HMMs 29240
Date Mon Mar 25 15:44:48 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/018468.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/018468hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 1sez_A Protoporphyrinogen oxid 100.0 3.2E-35 1.1E-39 286.3 25.1 349 1-354 40-412 (504)
2 3i6d_A Protoporphyrinogen oxid 100.0 1.3E-34 4.5E-39 279.1 19.5 327 1-354 38-386 (470)
3 2ivd_A PPO, PPOX, protoporphyr 100.0 1.8E-33 6.2E-38 272.1 24.8 329 1-354 43-392 (478)
4 3lov_A Protoporphyrinogen oxid 100.0 4.6E-33 1.6E-37 269.0 24.5 329 1-354 33-383 (475)
5 3nks_A Protoporphyrinogen oxid 100.0 6.4E-34 2.2E-38 275.1 16.2 331 1-354 31-392 (477)
6 4gde_A UDP-galactopyranose mut 99.9 6.6E-28 2.3E-32 234.9 12.1 319 1-354 38-393 (513)
7 4dsg_A UDP-galactopyranose mut 99.9 5E-27 1.7E-31 227.0 12.6 309 1-353 37-368 (484)
8 1s3e_A Amine oxidase [flavin-c 99.9 1.3E-25 4.5E-30 219.3 15.2 310 1-354 31-363 (520)
9 2vvm_A Monoamine oxidase N; FA 99.9 1.5E-23 5.1E-28 203.5 8.1 287 1-337 66-385 (495)
10 3ka7_A Oxidoreductase; structu 99.9 2.8E-22 9.6E-27 190.6 16.1 274 1-338 27-335 (425)
11 2yg5_A Putrescine oxidase; oxi 99.9 2.9E-23 9.9E-28 199.2 8.5 303 1-354 32-361 (453)
12 3nrn_A Uncharacterized protein 99.9 7.9E-21 2.7E-25 180.5 17.7 275 1-336 27-320 (421)
13 1v0j_A UDP-galactopyranose mut 99.8 1.7E-19 5.9E-24 170.1 15.4 268 1-337 35-318 (399)
14 2jae_A L-amino acid oxidase; o 99.8 2.4E-22 8.4E-27 194.6 -4.8 314 1-354 38-390 (489)
15 2bi7_A UDP-galactopyranose mut 99.8 2.5E-18 8.5E-23 161.2 19.0 265 1-337 30-304 (384)
16 1rsg_A FMS1 protein; FAD bindi 99.8 6.3E-20 2.1E-24 178.9 8.1 242 1-298 36-316 (516)
17 3hdq_A UDP-galactopyranose mut 99.8 2.2E-18 7.4E-23 161.3 17.5 278 1-348 56-339 (397)
18 2xag_A Lysine-specific histone 99.8 1.2E-19 4E-24 184.6 7.7 147 197-354 563-726 (852)
19 2z3y_A Lysine-specific histone 99.8 1.4E-19 4.7E-24 181.2 7.4 146 197-354 392-555 (662)
20 1i8t_A UDP-galactopyranose mut 99.8 4.8E-18 1.6E-22 158.4 16.6 262 1-334 28-298 (367)
21 2b9w_A Putative aminooxidase; 99.8 1.9E-18 6.3E-23 164.2 10.0 296 1-353 34-346 (424)
22 1b37_A Protein (polyamine oxid 99.7 1.1E-18 3.8E-23 168.2 8.1 298 1-354 32-368 (472)
23 2iid_A L-amino-acid oxidase; f 99.7 3.2E-18 1.1E-22 166.0 11.3 304 1-354 60-392 (498)
24 4gut_A Lysine-specific histone 99.7 1.4E-16 4.7E-21 161.0 10.7 306 1-354 363-686 (776)
25 3k7m_X 6-hydroxy-L-nicotine ox 99.7 7.9E-16 2.7E-20 146.3 14.3 293 1-352 28-341 (431)
26 4dgk_A Phytoene dehydrogenase; 99.5 5.2E-13 1.8E-17 129.3 18.4 288 1-336 28-375 (501)
27 3ayj_A Pro-enzyme of L-phenyla 99.5 3.2E-14 1.1E-18 141.3 6.4 48 1-48 91-163 (721)
28 1d5t_A Guanine nucleotide diss 99.4 2.3E-11 7.9E-16 115.6 19.7 287 1-339 33-361 (433)
29 3p1w_A Rabgdi protein; GDI RAB 99.3 1.7E-11 5.8E-16 116.9 12.6 213 1-247 47-311 (475)
30 3qj4_A Renalase; FAD/NAD(P)-bi 99.2 4.8E-12 1.6E-16 116.4 3.3 143 198-354 104-265 (342)
31 2bcg_G Secretory pathway GDP d 99.2 6.9E-10 2.4E-14 106.0 17.9 130 1-132 38-195 (453)
32 1vg0_A RAB proteins geranylger 98.9 1.3E-07 4.4E-12 93.0 19.6 263 19-335 222-507 (650)
33 2e1m_A L-glutamate oxidase; L- 98.6 3.6E-08 1.2E-12 91.4 4.8 50 1-50 71-131 (376)
34 1yvv_A Amine oxidase, flavin-c 98.4 9.6E-07 3.3E-11 80.3 8.5 138 199-354 103-252 (336)
35 2e1m_B L-glutamate oxidase; L- 98.3 6.4E-08 2.2E-12 75.1 0.4 92 235-351 4-97 (130)
36 3kkj_A Amine oxidase, flavin-c 95.4 0.0093 3.2E-07 51.0 3.4 44 1-44 29-72 (336)
37 1yvv_A Amine oxidase, flavin-c 86.2 0.46 1.6E-05 42.2 3.4 46 1-46 29-74 (336)
38 3qj4_A Renalase; FAD/NAD(P)-bi 72.6 1.7 5.8E-05 38.7 2.4 44 1-44 31-80 (342)
39 2e1m_C L-glutamate oxidase; L- 32.3 7.6 0.00026 31.2 -0.6 26 329-354 37-62 (181)
No 1
>1sez_A Protoporphyrinogen oxidase, mitochondrial; FAD-binding, para-hydroxy-benzoate-hydroxylase fold (PHBH- fold), monotopic membrane-binding domain; HET: FAD OMN TON; 2.90A {Nicotiana tabacum} SCOP: c.3.1.2 d.16.1.5
Probab=100.00 E-value=3.2e-35 Score=286.27 Aligned_cols=349 Identities=66% Similarity=1.076 Sum_probs=255.7
Q ss_pred CeeecCCCCCceEEEeecCCeEEcccCCeeecCcHHHHHHHHHcCCccccccccCCCceEEEECCEEeecCCCchhhhhc
Q 018468 1 MVFEADERAGGKLRSISKDGLIWDEGANTMTESEMEVKGLLDDLGIREKQQFPISQYKRYVVRNGVPFLIPTNPIALLTS 80 (355)
Q Consensus 1 ~vlEA~drvGGri~T~~~~g~~~d~G~~~~~~~~~~~~~l~~~lGl~~~~~~~~~~~~~~i~~~g~~~~~p~~~~~~l~~ 80 (355)
+|||+++++||+++|.+.+|+.+|.|++++...++.+.+++++||+.....++......+++.+|+.+.+|.++..++..
T Consensus 40 ~v~E~~~~~GG~~~~~~~~g~~~~~g~~~~~~~~~~~~~~~~~lgl~~~~~~~~~~~~~~~~~~g~~~~~p~~~~~~~~~ 119 (504)
T 1sez_A 40 TVFEAEGKAGGKLRSVSQDGLIWDEGANTMTESEGDVTFLIDSLGLREKQQFPLSQNKRYIARNGTPVLLPSNPIDLIKS 119 (504)
T ss_dssp EEECSSSSSCSSCCEEEETTEEEESSCCCBCCCSHHHHHHHHHTTCGGGEECCSSCCCEEEESSSSEEECCSSHHHHHHS
T ss_pred EEEEeCCCCCCceeeeccCCeEEecCCcccccCcHHHHHHHHHcCCcccceeccCCCceEEEECCeEEECCCCHHHHhcc
Confidence 58999999999999999999999999999887789999999999998765554333456777889888899887777776
Q ss_pred ccCChhHHHHHhcccccccCCCcccccCCCCCCCHHHHHHHhhcHHHHHHHhhhhhhccccCCcccchHHhhchHHHHHH
Q 018468 81 NFLSAQSKFQIILEPFLWKKSDSAKVSAEDAKESVGGFFQRHFGREVVDFLIDPFVAGTSAGDPESLVMRHSFPELWNLE 160 (355)
Q Consensus 81 ~~ls~~~~~~~~~~~~~~~~~~~~~~~~~~~~~sv~~~l~~~~~~~~~~~~~~p~~~~~~~~~~~~lS~~~~l~~l~~~~ 160 (355)
.++++.++++++.+.+.+...... ....+++|+.+|++++++++..+++++|++.++|+.+++++|+.++++.++.++
T Consensus 120 ~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~s~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~ 197 (504)
T 1sez_A 120 NFLSTGSKLQMLLEPILWKNKKLS--QVSDSHESVSGFFQRHFGKEVVDYLIDPFVAGTCGGDPDSLSMHHSFPELWNLE 197 (504)
T ss_dssp SSSCHHHHHHHHTHHHHC------------CCCBHHHHHHHHHCHHHHHTTHHHHHHHHHSCCGGGSBHHHHCHHHHHHH
T ss_pred ccCCHHHHHHHhHhhhccCccccc--ccCCCCccHHHHHHHHcCHHHHHHHHHHHHccccCCChHHhhHHHHhHHHHHHH
Confidence 778888888776655432221000 012457999999999999999999999999999999999999999999999988
Q ss_pred HhhCchHHHHHHhhhhhhhhhhh--hhcCchhhhcCCcceeEeCcchhhHHhhcccc--------Cc------ccCCC--
Q 018468 161 KRYGSVIAGAIKSKFSARKEKSA--EAKGSSEKKRRQRGSFSFLGGMQVLSLSYSHD--------GR------SALEN-- 222 (355)
Q Consensus 161 ~~~gs~~~g~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~gG~~~l~~~l~~~--------~~------~~~~~-- 222 (355)
+.+|+++.+++............ ..... ......+.++++||+++|+++|+.. +. ...++
T Consensus 198 ~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~GG~~~l~~~l~~~l~~~~i~~~~~V~~I~~~~~~~~ 275 (504)
T 1sez_A 198 KRFGSVILGAIRSKLSPKNEKKQGPPKTSA--NKKRQRGSFSFLGGMQTLTDAICKDLREDELRLNSRVLELSCSCTEDS 275 (504)
T ss_dssp HHTSCHHHHHHHHTTC----------CCCS--CCSTTCSCBEETTCTHHHHHHHHTTSCTTTEETTCCEEEEEEECSSSS
T ss_pred HHhCCHHHHHHHhhhcccccccccccchhh--ccccCCceEeeCcHHHHHHHHHHhhcccceEEcCCeEEEEEecCCCCc
Confidence 88898877776542211000000 00000 0001123678999999999877532 11 12334
Q ss_pred ----eEEEecCCCccc-ceeecCEEEEcCChhhhhHhhhccC-CCCcccCCCCCCCCcceEEEEEEecCCCCCCCCCceE
Q 018468 223 ----WSLCSSNQEKQS-LGLSFDAVIMTAPLCNVKEMKITKG-GNLFPLDFLPEVIYMPLSVIITTFKKENVRRPLEGFG 296 (355)
Q Consensus 223 ----~~V~~~~g~~~~-~~~~ad~VI~a~P~~~l~~l~~~~~-~~~~~~~~l~~~~~~~v~~v~l~~~~~~~~~~~~g~g 296 (355)
|.|++.++.+.. +++.||+||+|+|+..+.+++ ..+ ..|.....+++++|.++.+|++.|++++|+.+..+++
T Consensus 276 ~~~~~~v~~~~~~g~~~~~~~ad~VI~a~p~~~l~~ll-~~~~~~~~~~~~l~~~~~~~~~~v~l~~~~~~~~~~~~~~~ 354 (504)
T 1sez_A 276 AIDSWSIISASPHKRQSEEESFDAVIMTAPLCDVKSMK-IAKRGNPFLLNFIPEVDYVPLSVVITTFKRENVKYPLEGFG 354 (504)
T ss_dssp SSCEEEEEEBCSSSSCBCCCEESEEEECSCHHHHHTSE-EESSSSBCCCTTSCCCCEEEEEEEEEEEEGGGBSSCCCSSE
T ss_pred ccceEEEEEcCCCCccceeEECCEEEECCCHHHHHHHh-hcccCCcccHHHHhcCCCCceEEEEEEEchhhcCCCCCceE
Confidence 677765321111 378999999999999999985 211 1111123478899999999999999988876678899
Q ss_pred EEecCCCCCCCCceEEEEecCCCCCCCCCCCceEEEEEecCCCCccccCCCchHHhhc
Q 018468 297 VLVPSKEQQNGLKTLGTLFSSMMFPDRVPKDLYLYTTFVGGSRNKELAKASTYKELQS 354 (355)
Q Consensus 297 ~l~~~~~~~~~~~~~~~~~~s~~~~~~~p~~~~~l~~~~~g~~~~~~~~~sd~e~~~~ 354 (355)
+++|+.+..++..+.+++|.|..+|...|+++.++++|++|..++.+..++|+|+++.
T Consensus 355 ~l~~~~~~~~g~~~~~~~~~s~~~~~~~p~g~~~l~~~~~g~~~~~~~~~~~ee~~~~ 412 (504)
T 1sez_A 355 VLVPSKEQQHGLKTLGTLFSSMMFPDRAPNNVYLYTTFVGGSRNRELAKASRTELKEI 412 (504)
T ss_dssp EECCGGGGGGTCCSSEEEEHHHHCGGGSCTTEEEEEEEEESTTCGGGTTCCHHHHHHH
T ss_pred EEcCCCCCCCCCccceEEeeccccCCcCCCCCEEEEEEeCCCCcccccCCCHHHHHHH
Confidence 9998755222346788999988899878888889999999999889999999998763
No 2
>3i6d_A Protoporphyrinogen oxidase; protein-inhibitor complex, cytoplasm, FAD, flavoprotein, oxidoreductase, porphyrin biosynthesis; HET: FAD ACJ; 2.90A {Bacillus subtilis}
Probab=100.00 E-value=1.3e-34 Score=279.09 Aligned_cols=327 Identities=23% Similarity=0.380 Sum_probs=235.8
Q ss_pred CeeecCCCCCceEEEeecCCeEEcccCCeeecCcHHHHHHHHHcCCccccccccCCCceEEEECCEEeecCCC-------
Q 018468 1 MVFEADERAGGKLRSISKDGLIWDEGANTMTESEMEVKGLLDDLGIREKQQFPISQYKRYVVRNGVPFLIPTN------- 73 (355)
Q Consensus 1 ~vlEA~drvGGri~T~~~~g~~~d~G~~~~~~~~~~~~~l~~~lGl~~~~~~~~~~~~~~i~~~g~~~~~p~~------- 73 (355)
+||||++|+||+++|.+.+|+.+|.|++++...++.++++++++|+...+.. ...+..+++.+|+++.+|.+
T Consensus 38 ~vlEa~~~~GG~~~s~~~~g~~~d~G~~~~~~~~~~~~~l~~~lgl~~~~~~-~~~~~~~~~~~g~~~~~~~~~~~~~p~ 116 (470)
T 3i6d_A 38 TLVEASPRVGGKIQTVKKDGYIIERGPDSFLERKKSAPQLVKDLGLEHLLVN-NATGQSYVLVNRTLHPMPKGAVMGIPT 116 (470)
T ss_dssp EEECSSSSSCTTCCEECCTTCCEESSCCCEETTCTHHHHHHHHTTCCTTEEE-CCCCCEEEECSSCEEECCC--------
T ss_pred EEEECCCCCCceEEEeccCCEEeccChhhhhhCCHHHHHHHHHcCCcceeec-CCCCccEEEECCEEEECCCCcccCCcC
Confidence 5899999999999999999999999999998888999999999999886653 22456788888888776642
Q ss_pred -chhhhhcccCChhHHHHHhcccccccCCCcccccCCCCCCCHHHHHHHhhcHHHHHHHhhhhhhccccCCcccchHHhh
Q 018468 74 -PIALLTSNFLSAQSKFQIILEPFLWKKSDSAKVSAEDAKESVGGFFQRHFGREVVDFLIDPFVAGTSAGDPESLVMRHS 152 (355)
Q Consensus 74 -~~~~l~~~~ls~~~~~~~~~~~~~~~~~~~~~~~~~~~~~sv~~~l~~~~~~~~~~~~~~p~~~~~~~~~~~~lS~~~~ 152 (355)
+..++...++++.++++...+.+.... ...+++|+.+|+.++++.+..+.++.|++.++|+.+++++|+.++
T Consensus 117 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~-------~~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~ 189 (470)
T 3i6d_A 117 KIAPFVSTGLFSLSGKARAAMDFILPAS-------KTKDDQSLGEFFRRRVGDEVVENLIEPLLSGIYAGDIDKLSLMST 189 (470)
T ss_dssp -------------CCSHHHHHHHHSCCC-------SSSSCCBHHHHHHHHSCHHHHHHTHHHHHHHTTCSCTTTBBHHHH
T ss_pred chHHhhccCcCCHHHHHHHhcCcccCCC-------CCCCCcCHHHHHHHhcCHHHHHHhccchhcEEecCCHHHhhHHHH
Confidence 234444556666666666555543211 346789999999999999999999999999999999999999999
Q ss_pred chHHHHHHHhhCchHHHHHHhhhhhhhhhhhhhcCchhhhcCCcceeEeCcchhhHHhhcccc--------C------cc
Q 018468 153 FPELWNLEKRYGSVIAGAIKSKFSARKEKSAEAKGSSEKKRRQRGSFSFLGGMQVLSLSYSHD--------G------RS 218 (355)
Q Consensus 153 l~~l~~~~~~~gs~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~gG~~~l~~~l~~~--------~------~~ 218 (355)
++.+...+..+++++.++.......... .. ........+.++||+++|.++++.. + ..
T Consensus 190 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~------~~--~~~~~~~~~~~~~g~~~l~~~l~~~l~~~~i~~~~~V~~i~~ 261 (470)
T 3i6d_A 190 FPQFYQTEQKHRSLILGMKKTRPQGSGQ------QL--TAKKQGQFQTLSTGLQTLVEEIEKQLKLTKVYKGTKVTKLSH 261 (470)
T ss_dssp CGGGCC---------------------------------------EEEETTCTHHHHHHHHHTCCSEEEECSCCEEEEEE
T ss_pred HHHHHHHHHhcCcHHHHHHhhccccccc------cc--cccCCceEEEeCChHHHHHHHHHHhcCCCEEEeCCceEEEEE
Confidence 9988766666777765543221000000 00 0001224678999999998776421 1 12
Q ss_pred cCCCeEEEecCCCcccceeecCEEEEcCChhhhhHhhhccCCCCcccCCCCCCCCcceEEEEEEecCCCCCCCCCceEEE
Q 018468 219 ALENWSLCSSNQEKQSLGLSFDAVIMTAPLCNVKEMKITKGGNLFPLDFLPEVIYMPLSVIITTFKKENVRRPLEGFGVL 298 (355)
Q Consensus 219 ~~~~~~V~~~~g~~~~~~~~ad~VI~a~P~~~l~~l~~~~~~~~~~~~~l~~~~~~~v~~v~l~~~~~~~~~~~~g~g~l 298 (355)
..++|.|++.+|. ++.||+||+|+|+..+.+++ .+ +...+++++++|.++.+|++.|++++|+.+..++|++
T Consensus 262 ~~~~~~v~~~~g~----~~~ad~vi~a~p~~~~~~l~--~~--~~~~~~~~~~~~~~~~~v~l~~~~~~~~~~~~~~g~l 333 (470)
T 3i6d_A 262 SGSCYSLELDNGV----TLDADSVIVTAPHKAAAGML--SE--LPAISHLKNMHSTSVANVALGFPEGSVQMEHEGTGFV 333 (470)
T ss_dssp CSSSEEEEESSSC----EEEESEEEECSCHHHHHHHT--TT--STTHHHHHTCEEEEEEEEEEEESSTTCCCSSCSSEEE
T ss_pred cCCeEEEEECCCC----EEECCEEEECCCHHHHHHHc--CC--chhhHHHhcCCCCceEEEEEEECchhcCCCCCCeEEE
Confidence 3457889888875 79999999999999999985 32 2345677889999999999999999987666789999
Q ss_pred ecCCCCCCCCceEEEEecCCCCCCCCCCCceEEEEEecCCCCccccCCCchHHhhc
Q 018468 299 VPSKEQQNGLKTLGTLFSSMMFPDRVPKDLYLYTTFVGGSRNKELAKASTYKELQS 354 (355)
Q Consensus 299 ~~~~~~~~~~~~~~~~~~s~~~~~~~p~~~~~l~~~~~g~~~~~~~~~sd~e~~~~ 354 (355)
+|+.+ +..+.+++|+|.+|+...|++..+|++++++..++++.+++++|+++.
T Consensus 334 ~~~~~---~~~~~~~~~~s~~~~~~~p~~~~~l~~~~~~~~~~~~~~~~~~~~~~~ 386 (470)
T 3i6d_A 334 ISRNS---DFAITACTWTNKKWPHAAPEGKTLLRAYVGKAGDESIVDLSDNDIINI 386 (470)
T ss_dssp ECSTT---CCSEEEEEEHHHHCGGGSCTTCEEEEEEECCSSCCGGGTSCHHHHHHH
T ss_pred ccCCC---CCCceEEEEEcCcCCCcCCCCCEEEEEEECCCCCccccCCCHHHHHHH
Confidence 98765 467889999998888888878889999999999899999999998764
No 3
>2ivd_A PPO, PPOX, protoporphyrinogen oxidase; porphyrin biosynthesis, chlorophyll biosynthesis, oxidoreductase, HAEM biosynthesis, heme biosynthesis; HET: ACJ FAD TWN; 2.3A {Myxococcus xanthus} SCOP: c.3.1.2 d.16.1.5 PDB: 2ive_A*
Probab=100.00 E-value=1.8e-33 Score=272.08 Aligned_cols=329 Identities=26% Similarity=0.443 Sum_probs=254.5
Q ss_pred CeeecCCCCCceEEEeecCCeEEcccCCeeecCcHHHHHHHHHcCCcccccccc-CCCceEEEECCEEeecCCCchhhhh
Q 018468 1 MVFEADERAGGKLRSISKDGLIWDEGANTMTESEMEVKGLLDDLGIREKQQFPI-SQYKRYVVRNGVPFLIPTNPIALLT 79 (355)
Q Consensus 1 ~vlEA~drvGGri~T~~~~g~~~d~G~~~~~~~~~~~~~l~~~lGl~~~~~~~~-~~~~~~i~~~g~~~~~p~~~~~~l~ 79 (355)
+|||+++++|||++|.+.+|+.+|.|++++...++.+.++++++|+...+.... .....+++.+|+.+.+|.+...++.
T Consensus 43 ~v~E~~~~~GGr~~t~~~~g~~~~~g~~~~~~~~~~~~~~~~~~gl~~~~~~~~~~~~~~~~~~~g~~~~~p~~~~~~~~ 122 (478)
T 2ivd_A 43 VLLESSARLGGAVGTHALAGYLVEQGPNSFLDREPATRALAAALNLEGRIRAADPAAKRRYVYTRGRLRSVPASPPAFLA 122 (478)
T ss_dssp EEECSSSSSBTTCCEEEETTEEEESSCCCEETTCHHHHHHHHHTTCGGGEECSCSSCCCEEEEETTEEEECCCSHHHHHT
T ss_pred EEEEcCCCCCceeeeeccCCeeeecChhhhhhhhHHHHHHHHHcCCcceeeecCccccceEEEECCEEEECCCCHHHhcc
Confidence 589999999999999999999999999999887899999999999986544322 1345778889999999988777777
Q ss_pred cccCChhHHHHHhcccccccCCCcccccCCCCCCCHHHHHHHhhcHHHHHHHhhhhhhccccCCcccchHHhhchHHHHH
Q 018468 80 SNFLSAQSKFQIILEPFLWKKSDSAKVSAEDAKESVGGFFQRHFGREVVDFLIDPFVAGTSAGDPESLVMRHSFPELWNL 159 (355)
Q Consensus 80 ~~~ls~~~~~~~~~~~~~~~~~~~~~~~~~~~~~sv~~~l~~~~~~~~~~~~~~p~~~~~~~~~~~~lS~~~~l~~l~~~ 159 (355)
..++++.++++++.+.+.... ...+++|+.+|++++++++..+.++.|++.++|+.+++++|+.++++.+...
T Consensus 123 ~~~~~~~~~~~~~~~~~~~~~-------~~~~~~s~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~ 195 (478)
T 2ivd_A 123 SDILPLGARLRVAGELFSRRA-------PEGVDESLAAFGRRHLGHRATQVLLDAVQTGIYAGDVEQLSVAATFPMLVKM 195 (478)
T ss_dssp CSSSCHHHHHHHHGGGGCCCC-------CTTCCCBHHHHHHHHTCHHHHHHTHHHHHHHHHCCCTTTBBHHHHCHHHHHH
T ss_pred CCCCCHHHHHHHhhhhhcCCC-------CCCCCCCHHHHHHHhhCHHHHHHHHHHHhceeecCCHHHhhHHHHhHHHHHH
Confidence 677888888887777654221 2357899999999999999999999999999999999999999999998888
Q ss_pred HHhhCchHHHHHHhhhhhhhhhhhhhcCchhhhcCC----cceeEeCcchhhHHhhcccc-------C------cccCCC
Q 018468 160 EKRYGSVIAGAIKSKFSARKEKSAEAKGSSEKKRRQ----RGSFSFLGGMQVLSLSYSHD-------G------RSALEN 222 (355)
Q Consensus 160 ~~~~gs~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~----~~~~~~~gG~~~l~~~l~~~-------~------~~~~~~ 222 (355)
+..+++++.+++......... . . . .... .+.+.++||+++|.++++.. + ....++
T Consensus 196 ~~~~~~~~~~~~~~~~~~~~~-~---~-~---~~~~~~~~~~~~~~~gG~~~l~~~l~~~lg~~i~~~~~V~~i~~~~~~ 267 (478)
T 2ivd_A 196 EREHRSLILGAIRAQKAQRQA-A---L-P---AGTAPKLSGALSTFDGGLQVLIDALAASLGDAAHVGARVEGLAREDGG 267 (478)
T ss_dssp HHHHSSHHHHHHHHHHHHTCC------------CCSCCCCCCEEEETTCTHHHHHHHHHHHGGGEESSEEEEEEECC--C
T ss_pred HHhcCcHHHHHHHhhhccccc-c---C-c---ccccccccccEEEECCCHHHHHHHHHHHhhhhEEcCCEEEEEEecCCe
Confidence 878888877664321000000 0 0 0 0011 34678999999999876431 1 123446
Q ss_pred eEEEe---cCCCcccceeecCEEEEcCChhhhhHhhhccCCCCcccCCCCCCCCcceEEEEEEecCCCCCCCCCceEEEe
Q 018468 223 WSLCS---SNQEKQSLGLSFDAVIMTAPLCNVKEMKITKGGNLFPLDFLPEVIYMPLSVIITTFKKENVRRPLEGFGVLV 299 (355)
Q Consensus 223 ~~V~~---~~g~~~~~~~~ad~VI~a~P~~~l~~l~~~~~~~~~~~~~l~~~~~~~v~~v~l~~~~~~~~~~~~g~g~l~ 299 (355)
|.|++ .+|. ++.||+||+|+|+..+.+|+ ++++++..+++++++|.++.+|++.|++++|+.+ .++++++
T Consensus 268 ~~v~~~~~~~g~----~~~ad~vV~a~~~~~~~~ll--~~l~~~~~~~l~~~~~~~~~~v~l~~~~~~~~~~-~~~~~~~ 340 (478)
T 2ivd_A 268 WRLIIEEHGRRA----ELSVAQVVLAAPAHATAKLL--RPLDDALAALVAGIAYAPIAVVHLGFDAGTLPAP-DGFGFLV 340 (478)
T ss_dssp CEEEEEETTEEE----EEECSEEEECSCHHHHHHHH--TTTCHHHHHHHHTCCBCCEEEEEEEECTTSSCCC-CSSEEEC
T ss_pred EEEEEeecCCCc----eEEcCEEEECCCHHHHHHHh--hccCHHHHHHHhcCCCCcEEEEEEEEccccCCCC-CceEEEe
Confidence 88887 4553 78999999999999999984 5555555677888999999999999998887533 6788888
Q ss_pred cCCCCCCCCceEEEEecCCCCCCCCCCCceEEEEEecCCCCccccCCCchHHhhc
Q 018468 300 PSKEQQNGLKTLGTLFSSMMFPDRVPKDLYLYTTFVGGSRNKELAKASTYKELQS 354 (355)
Q Consensus 300 ~~~~~~~~~~~~~~~~~s~~~~~~~p~~~~~l~~~~~g~~~~~~~~~sd~e~~~~ 354 (355)
|..+ +.++.+++|+++.++.+.|++..++++++++..++.+.+++++|+++.
T Consensus 341 ~~~~---~~~~~~~~~~s~~~~~~~p~g~~~l~~~~~~~~~~~~~~~~~~~~~~~ 392 (478)
T 2ivd_A 341 PAEE---QRRMLGAIHASTTFPFRAEGGRVLYSCMVGGARQPGLVEQDEDALAAL 392 (478)
T ss_dssp CGGG---CCSCCEEEEHHHHCGGGBSTTCEEEEEEEECTTCGGGGGSCHHHHHHH
T ss_pred cCCC---CCceEEEEEEcccCCCcCCCCCEEEEEEeCCcCCccccCCCHHHHHHH
Confidence 7644 346778999988787767777789999999988888888999887653
No 4
>3lov_A Protoporphyrinogen oxidase; structural genomics, JO center for structural genomics, JCSG, protein structure INI PSI-2; HET: FAD; 2.06A {Exiguobacterium sibiricum}
Probab=100.00 E-value=4.6e-33 Score=269.05 Aligned_cols=329 Identities=18% Similarity=0.279 Sum_probs=251.8
Q ss_pred CeeecCCCCCceEEEeecCCeEEcccCCeeecCcHHHHHHHHHcCCccccccccCCCceEEEECCEEeecCCC-------
Q 018468 1 MVFEADERAGGKLRSISKDGLIWDEGANTMTESEMEVKGLLDDLGIREKQQFPISQYKRYVVRNGVPFLIPTN------- 73 (355)
Q Consensus 1 ~vlEA~drvGGri~T~~~~g~~~d~G~~~~~~~~~~~~~l~~~lGl~~~~~~~~~~~~~~i~~~g~~~~~p~~------- 73 (355)
+|||+++++||++.|.+.+|+.+|.|++++...++.+.++++++|+..+.... ..+..+++.+|+++.+|.+
T Consensus 33 ~v~E~~~~~GG~~~~~~~~g~~~~~g~~~~~~~~~~~~~l~~~lg~~~~~~~~-~~~~~~~~~~g~~~~~p~~~~~~~p~ 111 (475)
T 3lov_A 33 TLLEAGERLGGKVATYREDGFTIERGPDSYVARKHILTDLIEAIGLGEKLVRN-NTSQAFILDTGGLHPIPKGAVMGIPT 111 (475)
T ss_dssp EEECSSSSSBTTCCEECSTTCCEESSCCCEETTSTHHHHHHHHTTCGGGEEEC-CCCCEEEEETTEEEECCSSEETTEES
T ss_pred EEEECCCCCCceeEEEeeCCEEEecCchhhhcccHHHHHHHHHcCCcceEeec-CCCceEEEECCEEEECCCcccccCcC
Confidence 58999999999999999999999999999988889999999999998866532 2456788899998887653
Q ss_pred -chhhhhcccCChhHHHHHhcccccccCCCcccccCCCCCCCHHHHHHHhhcHHHHHHHhhhhhhccccCCcccchHHhh
Q 018468 74 -PIALLTSNFLSAQSKFQIILEPFLWKKSDSAKVSAEDAKESVGGFFQRHFGREVVDFLIDPFVAGTSAGDPESLVMRHS 152 (355)
Q Consensus 74 -~~~~l~~~~ls~~~~~~~~~~~~~~~~~~~~~~~~~~~~~sv~~~l~~~~~~~~~~~~~~p~~~~~~~~~~~~lS~~~~ 152 (355)
+..++...++++.+++ .+.+.+....... ....+++|+.+|+.++++.++.+.++.|++.++|+.+++++|+.++
T Consensus 112 ~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~---~~~~~~~s~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~ls~~~~ 187 (475)
T 3lov_A 112 DLDLFRQTTLLTEEEKQ-EVADLLLHPSDSL---RIPEQDIPLGEYLRPRLGDALVEKLIEPLLSGIYAGNIDQMSTFAT 187 (475)
T ss_dssp CHHHHTTCSSSCHHHHH-HHHHHHHSCCTTC---CCCSSCCBHHHHHHHHHCHHHHHHTHHHHHHGGGCCCTTTSBSTTT
T ss_pred chHHHhhccCCChhHHH-HhhCcccCCcccc---cCCCCCcCHHHHHHHHhCHHHHHHHHHHHhceeecCChHHcCHHHH
Confidence 3556666788887777 4444432111100 0145789999999999999999999999999999999999999999
Q ss_pred chHHHHHHHhhCchHHHHHHhhhhhhhhhhhhhcCchhhhcCCcceeEeCcchhhHHhhcccc--------Cc------c
Q 018468 153 FPELWNLEKRYGSVIAGAIKSKFSARKEKSAEAKGSSEKKRRQRGSFSFLGGMQVLSLSYSHD--------GR------S 218 (355)
Q Consensus 153 l~~l~~~~~~~gs~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~gG~~~l~~~l~~~--------~~------~ 218 (355)
++.+..+++.+++++.++........ ... ..... .......+.++||+++|+++++.. +. +
T Consensus 188 ~~~~~~~~~~~~~l~~~~~~~~~~~~-~~~-~~~~~---~~~~~~~~~~~~G~~~l~~~l~~~l~~~~i~~~~~V~~i~~ 262 (475)
T 3lov_A 188 YPQFVANEQKAGSLFEGMRLMRPLDQ-LPQ-TPQTT---IKATGQFLSLETGLESLIERLEEVLERSEIRLETPLLAISR 262 (475)
T ss_dssp CHHHHHHHHHHSSHHHHHHHTCC-------------------CCSEEEETTCHHHHHHHHHHHCSSCEEESSCCCCEEEE
T ss_pred HHHHHHHHHhcCcHHHHHHHhccccc-ccc-ccccc---ccCCCcEEeeCChHHHHHHHHHhhccCCEEEcCCeeeEEEE
Confidence 99998888888998777543210000 000 00000 001224678999999998776421 11 1
Q ss_pred cCCCeEEEecCCCcccceeecCEEEEcCChhhhhHhhhccCCCCcccCCCCCCCCcceEEEEEEecCCCCCCCCCceEEE
Q 018468 219 ALENWSLCSSNQEKQSLGLSFDAVIMTAPLCNVKEMKITKGGNLFPLDFLPEVIYMPLSVIITTFKKENVRRPLEGFGVL 298 (355)
Q Consensus 219 ~~~~~~V~~~~g~~~~~~~~ad~VI~a~P~~~l~~l~~~~~~~~~~~~~l~~~~~~~v~~v~l~~~~~~~~~~~~g~g~l 298 (355)
..++|.|++.+| ++.||+||+|+|+..+.+|+ .+. + . +++++++|.++.+|++.|++++ ..+..++|++
T Consensus 263 ~~~~~~v~~~~g-----~~~ad~vV~a~p~~~~~~ll--~~~-~-~-~~~~~~~~~~~~~v~l~~~~~~-~~~~~g~g~l 331 (475)
T 3lov_A 263 EDGRYRLKTDHG-----PEYADYVLLTIPHPQVVQLL--PDA-H-L-PELEQLTTHSTATVTMIFDQQQ-SLPIEGTGFV 331 (475)
T ss_dssp ETTEEEEECTTC-----CEEESEEEECSCHHHHHHHC--TTS-C-C-HHHHTCCEEEEEEEEEEEECCS-SCSSSSSEEE
T ss_pred eCCEEEEEECCC-----eEECCEEEECCCHHHHHHHc--Ccc-C-H-HHHhcCCCCeEEEEEEEECCcC-CCCCCCEEEE
Confidence 345688887666 78999999999999999985 332 2 2 6678899999999999999887 4456789999
Q ss_pred ecCCCCCCCCceEEEEecCCCCCCCCCCCceEEEEEecCCCCccccCCCchHHhhc
Q 018468 299 VPSKEQQNGLKTLGTLFSSMMFPDRVPKDLYLYTTFVGGSRNKELAKASTYKELQS 354 (355)
Q Consensus 299 ~~~~~~~~~~~~~~~~~~s~~~~~~~p~~~~~l~~~~~g~~~~~~~~~sd~e~~~~ 354 (355)
+++.+ +..+.+++|+|++|+...|+ ..++++|+++..++.+.+++|+|+++.
T Consensus 332 ~~~~~---~~~~~~~~~~s~~~~~~~p~-~~~l~~~~~~~~~~~~~~~~~e~~~~~ 383 (475)
T 3lov_A 332 VNRRA---PYSITACTAIDQKWNHSAPD-HTVLRAFVGRPGNDHLVHESDEVLQQA 383 (475)
T ss_dssp ECTTS---SCSEEEEEEHHHHCTTTCTT-EEEEEEEECBTTBCGGGGSCHHHHHHH
T ss_pred ecCCC---CCceEEEEEEcccCCCCCCC-cEEEEEEeCCCCCCcccCCCHHHHHHH
Confidence 98876 56788999999999988887 788999999988889999999998764
No 5
>3nks_A Protoporphyrinogen oxidase; FAD containing protein, PPO, variegate porphyria disease, VP oxidoreductase-oxidoreductase inhibitor complex; HET: ACJ FAD; 1.90A {Homo sapiens}
Probab=100.00 E-value=6.4e-34 Score=275.14 Aligned_cols=331 Identities=23% Similarity=0.358 Sum_probs=241.9
Q ss_pred CeeecCCCCCceEEEeec-CCeEEcccCCeeecC---cHHHHHHHHHcCCcccccccc----CCCceEEEECCEEeecCC
Q 018468 1 MVFEADERAGGKLRSISK-DGLIWDEGANTMTES---EMEVKGLLDDLGIREKQQFPI----SQYKRYVVRNGVPFLIPT 72 (355)
Q Consensus 1 ~vlEA~drvGGri~T~~~-~g~~~d~G~~~~~~~---~~~~~~l~~~lGl~~~~~~~~----~~~~~~i~~~g~~~~~p~ 72 (355)
+||||++|+||+++|.+. +|+.+|.|++++... ++.+.++++++|+.+++.... .....|++.+|+++++|.
T Consensus 31 ~vlEa~~~~GG~~~t~~~~~g~~~d~G~~~~~~~~~~~~~~~~l~~~lgl~~~~~~~~~~~~~~~~~~~~~~g~~~~~p~ 110 (477)
T 3nks_A 31 VLVESSERLGGWIRSVRGPNGAIFELGPRGIRPAGALGARTLLLVSELGLDSEVLPVRGDHPAAQNRFLYVGGALHALPT 110 (477)
T ss_dssp EEECSSSSSBTTCCEEECTTSCEEESSCCCBCCCHHHHHHHHHHHHHTTCGGGEEEECTTSHHHHCEEEEETTEEEECCC
T ss_pred EEEeCCCCCCCceEEEeccCCeEEEeCCCcccCCCcccHHHHHHHHHcCCcceeeecCCCCchhcceEEEECCEEEECCC
Confidence 589999999999999876 599999999988754 678999999999987654321 112468889999999987
Q ss_pred Cchhhhh-cccCChhHHHHHhcccccccCCCcccccCCCCCCCHHHHHHHhhcHHHHHHHhhhhhhccccCCcccchHHh
Q 018468 73 NPIALLT-SNFLSAQSKFQIILEPFLWKKSDSAKVSAEDAKESVGGFFQRHFGREVVDFLIDPFVAGTSAGDPESLVMRH 151 (355)
Q Consensus 73 ~~~~~l~-~~~ls~~~~~~~~~~~~~~~~~~~~~~~~~~~~~sv~~~l~~~~~~~~~~~~~~p~~~~~~~~~~~~lS~~~ 151 (355)
++..++. ...+....+.+++.+.+... ...+++|+.+|+.++++.++.+++++|++.++|+.+++++|+.+
T Consensus 111 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~--------~~~~~~s~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~ls~~~ 182 (477)
T 3nks_A 111 GLRGLLRPSPPFSKPLFWAGLRELTKPR--------GKEPDETVHSFAQRRLGPEVASLAMDSLCRGVFAGNSRELSIRS 182 (477)
T ss_dssp SSCC---CCTTSCSCSSHHHHTTTTSCC--------CCSSCCBHHHHHHHHHCHHHHHHTHHHHHHHHHSSCTTTBBHHH
T ss_pred ChhhcccccchhhhHHHHHHHHhhhcCC--------CCCCCcCHHHHHHHhhCHHHHHHHHHHHhcccccCCHHHhhHHH
Confidence 6544432 12232223334444444211 23568999999999999999999999999999999999999999
Q ss_pred hchHHHHHHHhhCchHHHHHHhhhhhhhhhhhhhcCchhhhcCCcceeEeCcchhhHHhhcccc----------Cc----
Q 018468 152 SFPELWNLEKRYGSVIAGAIKSKFSARKEKSAEAKGSSEKKRRQRGSFSFLGGMQVLSLSYSHD----------GR---- 217 (355)
Q Consensus 152 ~l~~l~~~~~~~gs~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~gG~~~l~~~l~~~----------~~---- 217 (355)
+++.++..++.+++++.+++........ ...+.+........+.++++||+++|+++++.. +.
T Consensus 183 ~~~~l~~~e~~~gsl~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~gG~~~l~~~l~~~l~~~g~~i~~~~~V~~ 259 (477)
T 3nks_A 183 CFPSLFQAEQTHRSILLGLLLGAGRTPQ---PDSALIRQALAERWSQWSLRGGLEMLPQALETHLTSRGVSVLRGQPVCG 259 (477)
T ss_dssp HCHHHHHHHHHHSCHHHHHHHC-----C---CCCHHHHHHHHTTCSEEEETTCTTHHHHHHHHHHHHTTCEEECSCCCCE
T ss_pred HHHHHHHHHHHcCCHHHHHHHhcccccC---CchhhhhhhcccCccEEEECCCHHHHHHHHHHHHHhcCCEEEeCCEEEE
Confidence 9999999999999998887643210000 000000000012235789999999999876421 11
Q ss_pred --ccCCC-eEEEecCCCcccceeecCEEEEcCChhhhhHhhhccCCCCcccCCCCCCCCcceEEEEEEecCCCCCCCCCc
Q 018468 218 --SALEN-WSLCSSNQEKQSLGLSFDAVIMTAPLCNVKEMKITKGGNLFPLDFLPEVIYMPLSVIITTFKKENVRRPLEG 294 (355)
Q Consensus 218 --~~~~~-~~V~~~~g~~~~~~~~ad~VI~a~P~~~l~~l~~~~~~~~~~~~~l~~~~~~~v~~v~l~~~~~~~~~~~~g 294 (355)
...++ |.|++. +. ++.||+||+|+|+..+.+|+ ++..|+..+.+++++|.++.+|++.|++++|+ .++
T Consensus 260 i~~~~~~~~~v~~~-~~----~~~ad~vv~a~p~~~~~~ll--~~~~~~~~~~l~~~~~~~~~~v~l~~~~~~~~--~~~ 330 (477)
T 3nks_A 260 LSLQAEGRWKVSLR-DS----SLEADHVISAIPASVLSELL--PAEAAPLARALSAITAVSVAVVNLQYQGAHLP--VQG 330 (477)
T ss_dssp EEECGGGCEEEECS-SC----EEEESEEEECSCHHHHHHHS--CGGGHHHHHHHHTCCEEEEEEEEEEETTCCCS--SCS
T ss_pred EEEcCCceEEEEEC-Ce----EEEcCEEEECCCHHHHHHhc--cccCHHHHHHHhcCCCCcEEEEEEEECCCCCC--CCC
Confidence 12334 778763 33 78999999999999999984 55556667788889999999999999998874 568
Q ss_pred eEEEecCCCCCCCCceEEEEecCCCCCCCC-CCCceEEEEEecCCCCccc----cCCCchHHhhc
Q 018468 295 FGVLVPSKEQQNGLKTLGTLFSSMMFPDRV-PKDLYLYTTFVGGSRNKEL----AKASTYKELQS 354 (355)
Q Consensus 295 ~g~l~~~~~~~~~~~~~~~~~~s~~~~~~~-p~~~~~l~~~~~g~~~~~~----~~~sd~e~~~~ 354 (355)
||+++|+.+ +..+++++|+|++||.+. |++..+|++|++|.+++++ .+++|+|+++.
T Consensus 331 ~g~l~~~~~---~~~~~~~~~~s~~~~~~~~~~~~~~l~~~~gg~~~~~~~~~~~~~~~~~~~~~ 392 (477)
T 3nks_A 331 FGHLVPSSE---DPGVLGIVYDSVAFPEQDGSPPGLRVTVMLGGSWLQTLEASGCVLSQELFQQR 392 (477)
T ss_dssp SEEECCTTT---CSSEEEEECHHHHCGGGSTTTTCEEEEEEECHHHHHHHHHSSCCCCHHHHHHH
T ss_pred ceEEccCCC---CCCceEEEEeccccCCCCCCCCceEEEEEECCccccccccccCCCCHHHHHHH
Confidence 999999876 467899999999998643 3367899999998766544 35788888763
No 6
>4gde_A UDP-galactopyranose mutase; flavin adenine dinucleotide binding, nucleotide binding, MUT isomerase; HET: FDA; 2.20A {Aspergillus fumigatus} PDB: 3ute_A* 3utg_A* 3uth_A* 4gdc_A* 4gdd_A* 3utf_A* 3ukh_A* 3ukf_A* 3uka_A* 3ukl_A* 3ukk_A* 3ukq_A* 3ukp_A*
Probab=99.95 E-value=6.6e-28 Score=234.89 Aligned_cols=319 Identities=13% Similarity=0.124 Sum_probs=213.7
Q ss_pred CeeecCCCCCceEEEee-cCCeEEcccCCeeecCcHHHHHHHHHcCCccccccccCCCceEEEECCEEeecCCCchhhhh
Q 018468 1 MVFEADERAGGKLRSIS-KDGLIWDEGANTMTESEMEVKGLLDDLGIREKQQFPISQYKRYVVRNGVPFLIPTNPIALLT 79 (355)
Q Consensus 1 ~vlEA~drvGGri~T~~-~~g~~~d~G~~~~~~~~~~~~~l~~~lGl~~~~~~~~~~~~~~i~~~g~~~~~p~~~~~~l~ 79 (355)
+||||++|+||+++|.. .+|+.+|.|+|+|+..++.+++++++++....... ......+++.+|++++.|.... +
T Consensus 38 ~VlE~~~~~GG~~~T~~~~~G~~~D~G~h~~~~~~~~v~~l~~e~~~~~~~~~-~~~~~~~i~~~g~~~~~p~~~~--~- 113 (513)
T 4gde_A 38 MIVDSNETPGGLASTDVTPEGFLYDVGGHVIFSHYKYFDDCLDEALPKEDDWY-THQRISYVRCQGQWVPYPFQNN--I- 113 (513)
T ss_dssp EEEESSSSCCGGGCEEECTTSCEEESSCCCCCCCBHHHHHHHHHHSCSGGGEE-EEECCEEEEETTEEEESSGGGG--G-
T ss_pred EEEECCCCCcCCeeeEEecCCEEEEeCceEecCCCHHHHHHHHHhCCccceeE-EecCceEEEECCeEeecchhhh--h-
Confidence 58999999999999974 58999999999999899999999999887653222 2234578889999988874211 1
Q ss_pred cccCChhHHHHHhccc----ccccCCCcccccCCCCCCCHHHHHHHhhcHHHHHHHhhhhhhccccCCcccchHHhhchH
Q 018468 80 SNFLSAQSKFQIILEP----FLWKKSDSAKVSAEDAKESVGGFFQRHFGREVVDFLIDPFVAGTSAGDPESLVMRHSFPE 155 (355)
Q Consensus 80 ~~~ls~~~~~~~~~~~----~~~~~~~~~~~~~~~~~~sv~~~l~~~~~~~~~~~~~~p~~~~~~~~~~~~lS~~~~l~~ 155 (355)
..+......+..... +.... ...+++|+.+|+.+++|+++.+.++.|++.++|+.+++++|+.++.+.
T Consensus 114 -~~~~~~~~~~~~~~~~~~~~~~~~-------~~~~~~s~~~~~~~~~g~~l~~~~~~~~~~~~~~~~~~~ls~~~~~~~ 185 (513)
T 4gde_A 114 -SMLPKEEQVKCIDGMIDAALEARV-------ANTKPKTFDEWIVRMMGTGIADLFMRPYNFKVWAVPTTKMQCAWLGER 185 (513)
T ss_dssp -GGSCHHHHHHHHHHHHHHHHHHHT-------CCSCCCSHHHHHHHHHHHHHHHHTHHHHHHHHHSSCGGGBCSGGGCSS
T ss_pred -hhcchhhHHHHHHHHHHHHHhhhc-------ccccccCHHHHHHHhhhhhhhhhhcchhhhhhccCChHHhhHHHHHHh
Confidence 111222222221111 11111 234578999999999999999999999999999999999999988655
Q ss_pred HHHHHHhhCchHHHHHHhhhhhhhhhhhhhcCchhhhcC-CcceeEeCcchhhHHhhcccc----C------cc----cC
Q 018468 156 LWNLEKRYGSVIAGAIKSKFSARKEKSAEAKGSSEKKRR-QRGSFSFLGGMQVLSLSYSHD----G------RS----AL 220 (355)
Q Consensus 156 l~~~~~~~gs~~~g~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~gG~~~l~~~l~~~----~------~~----~~ 220 (355)
+..... ...+.+.+.... . . .... ....+.++||+++|+++++.. + .+ ..
T Consensus 186 ~~~~~~--~~~~~~~~~~~~----~-----~----~~~~~~~~~~~~~gG~~~l~~~l~~~l~~~g~~i~~~~~V~~I~~ 250 (513)
T 4gde_A 186 VAAPNL--KAVTTNVILGKT----A-----G----NWGPNATFRFPARGGTGGIWIAVANTLPKEKTRFGEKGKVTKVNA 250 (513)
T ss_dssp CCCCCH--HHHHHHHHHTCC----C-----C----SCBTTBEEEEESSSHHHHHHHHHHHTSCGGGEEESGGGCEEEEET
T ss_pred hcccch--hhhhhhhhhccc----c-----c----ccccccceeecccCCHHHHHHHHHHHHHhcCeeeecceEEEEEEc
Confidence 431100 001111111100 0 0 0011 112346789999999887532 1 11 12
Q ss_pred CCeEEEecCCCcccceeecCEEEEcCChhhhhHhhhccCCCCcccCCCCCCCCcceEEEEEEecCCCCCCCCCceEEEec
Q 018468 221 ENWSLCSSNQEKQSLGLSFDAVIMTAPLCNVKEMKITKGGNLFPLDFLPEVIYMPLSVIITTFKKENVRRPLEGFGVLVP 300 (355)
Q Consensus 221 ~~~~V~~~~g~~~~~~~~ad~VI~a~P~~~l~~l~~~~~~~~~~~~~l~~~~~~~v~~v~l~~~~~~~~~~~~g~g~l~~ 300 (355)
++..|++.+|. ++.||+||+|+|++.+.+++ .+ ++...+...++|.++.+|++.++........+.+++.+|
T Consensus 251 ~~~~v~~~~G~----~~~ad~vI~t~P~~~l~~~l--~~--~~~~~~~~~l~y~~~~~v~l~~~~~~~~~~~~~~~~y~~ 322 (513)
T 4gde_A 251 NNKTVTLQDGT----TIGYKKLVSTMAVDFLAEAM--ND--QELVGLTKQLFYSSTHVIGVGVRGSRPERIGDKCWLYFP 322 (513)
T ss_dssp TTTEEEETTSC----EEEEEEEEECSCHHHHHHHT--TC--HHHHHHHTTCCEEEEEEEEEEEESSCCTTTTTCCEEECC
T ss_pred cCCEEEEcCCC----EEECCEEEECCCHHHHHHhc--Cc--hhhHhhhhcccCCceEEEEEEEeccccccccccceeecc
Confidence 34466777875 89999999999999999995 32 334456678999999999999986543322334444444
Q ss_pred CCCC-----------------CCCCceEEEEecCCCCCCCCCCCceEEEEEecCCCCccccCCCchHHhhc
Q 018468 301 SKEQ-----------------QNGLKTLGTLFSSMMFPDRVPKDLYLYTTFVGGSRNKELAKASTYKELQS 354 (355)
Q Consensus 301 ~~~~-----------------~~~~~~~~~~~~s~~~~~~~p~~~~~l~~~~~g~~~~~~~~~sd~e~~~~ 354 (355)
+.+- .....+.++.|.+..++.+.+.+...+.+++++...+++..++|+|+++.
T Consensus 323 ~~~~~f~Ri~~~~n~sp~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~de~l~~~ 393 (513)
T 4gde_A 323 EDNCPFYRATIFSNYSPYNQPEASAALPTMQLADGSRPQSTEAKEGPYWSIMLEVSESSMKPVNQETILAD 393 (513)
T ss_dssp STTCSCSEEECGGGTCGGGSCCTTCCEECCEETTSCCCSCCSEECCCEEEEEEEEEEBTTBCCCTTTHHHH
T ss_pred CCCCceeEEEecCCCCcccCCCCCceEEEEEeccCCCcccccCCcceEEEEEecccchhccCCCHHHHHHH
Confidence 3320 01234567777777788777766667888888877889999999998763
No 7
>4dsg_A UDP-galactopyranose mutase; rossmann fold, flavin adenine dinucleotide, isomerase; HET: FAD UDP; 2.25A {Trypanosoma cruzi} PDB: 4dsh_A*
Probab=99.94 E-value=5e-27 Score=227.01 Aligned_cols=309 Identities=17% Similarity=0.193 Sum_probs=213.7
Q ss_pred CeeecCCCCCceEEEe-ecCCeEEcccCCeeecCcHHHHHHHHHcCCccccccccCCCceEEEECCEEeecCCCchhhhh
Q 018468 1 MVFEADERAGGKLRSI-SKDGLIWDEGANTMTESEMEVKGLLDDLGIREKQQFPISQYKRYVVRNGVPFLIPTNPIALLT 79 (355)
Q Consensus 1 ~vlEA~drvGGri~T~-~~~g~~~d~G~~~~~~~~~~~~~l~~~lGl~~~~~~~~~~~~~~i~~~g~~~~~p~~~~~~l~ 79 (355)
+|||+++++||+++|. ..+|+.+|.|++++...++.+.+++++++ .. .. ......+++.+|+++++|.... +
T Consensus 37 ~v~E~~~~~GG~~~~~~~~~g~~~~~g~~~~~~~~~~~~~l~~~~~-~~-~~--~~~~~~~~~~~g~~~~~P~~~~--~- 109 (484)
T 4dsg_A 37 HLYECNDTPGGLSRSFLDENGFTWDLGGHVIFSHYQYFDDVMDWAV-QG-WN--VLQRESWVWVRGRWVPYPFQNN--I- 109 (484)
T ss_dssp EEEESSSSSSGGGCEEECTTSCEEESSCCCBCCSBHHHHHHHHHHC-SC-EE--EEECCCEEEETTEEEESSGGGC--G-
T ss_pred EEEeCCCCCCCeeeeeecCCCcEEeeCCcccccChHHHHHHHHHHh-hh-hh--hccCceEEEECCEEEEeCccch--h-
Confidence 5899999999999996 67899999999999888899999999985 32 22 2234578889999999883211 1
Q ss_pred cccCChhHHHHHhcccccccCCCcccccCCCCCCCHHHHHHHhhcHHHHHHHhhhhhhccccCCcccchHHhhchHHHH-
Q 018468 80 SNFLSAQSKFQIILEPFLWKKSDSAKVSAEDAKESVGGFFQRHFGREVVDFLIDPFVAGTSAGDPESLVMRHSFPELWN- 158 (355)
Q Consensus 80 ~~~ls~~~~~~~~~~~~~~~~~~~~~~~~~~~~~sv~~~l~~~~~~~~~~~~~~p~~~~~~~~~~~~lS~~~~l~~l~~- 158 (355)
..++...+.+++...+..... ....+++|+++|+.+++|.++.++++.|++.++|+.+++++|+.++++.+..
T Consensus 110 -~~l~~~~~~~~~~~ll~~~~~-----~~~~~~~s~~e~~~~~~g~~~~~~~~~p~~~~v~~~~~~~ls~~~~~~r~~~~ 183 (484)
T 4dsg_A 110 -HRLPEQDRKRCLDELVRSHAR-----TYTEPPNNFEESFTRQFGEGIADIFMRPYNFKVWAVPPCLMSTEWVEERVAPV 183 (484)
T ss_dssp -GGSCHHHHHHHHHHHHHHHHC-----CCSSCCSSHHHHHHHHHHHHHCCCCCHHHHHHHHSSCGGGBCSSSCTTTSCCC
T ss_pred -hhCCHHHHHHHHHHHHHHHhc-----cCCCCCCCHHHHHHHHhHHHHHHHHHHHHHhhhcCCCHHHhcHHHHhccccCC
Confidence 223444444433333221100 0235689999999999999999999999999999999999999987665431
Q ss_pred -HHHhhCchHHHHHHhhhhhhhhhhhhhcCchhhhcCCcce--eEeCcchhhHHhhcccc--------Cc--cc----CC
Q 018468 159 -LEKRYGSVIAGAIKSKFSARKEKSAEAKGSSEKKRRQRGS--FSFLGGMQVLSLSYSHD--------GR--SA----LE 221 (355)
Q Consensus 159 -~~~~~gs~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~gG~~~l~~~l~~~--------~~--~~----~~ 221 (355)
++ .++.+++.... . ........ |.++||+++|+++++.. +. +. ..
T Consensus 184 ~l~----~~~~~~~~~~~----~----------~~~~~~~~f~yp~~gG~~~l~~~la~~l~~~~i~~~~~~~V~~I~~~ 245 (484)
T 4dsg_A 184 DLE----RIRRNIQENRD----D----------LGWGPNATFRFPQRGGTGIIYQAIKEKLPSEKLTFNSGFQAIAIDAD 245 (484)
T ss_dssp CHH----HHHHHHHHTCC----C----------CCCSTTSEEEEESSSCTHHHHHHHHHHSCGGGEEECGGGCEEEEETT
T ss_pred CHH----HHHHHHhhccc----c----------cCCCccceEEeecCCCHHHHHHHHHhhhhhCeEEECCCceeEEEEec
Confidence 11 12233322110 0 00001112 35679999999877532 11 00 01
Q ss_pred CeEEEecCCCcccceeecCEEEEcCChhhhhHhhhccC----CCCcccCCCCCCCCcceEEEEEEecCCCCCCCCCceEE
Q 018468 222 NWSLCSSNQEKQSLGLSFDAVIMTAPLCNVKEMKITKG----GNLFPLDFLPEVIYMPLSVIITTFKKENVRRPLEGFGV 297 (355)
Q Consensus 222 ~~~V~~~~g~~~~~~~~ad~VI~a~P~~~l~~l~~~~~----~~~~~~~~l~~~~~~~v~~v~l~~~~~~~~~~~~g~g~ 297 (355)
+-.|++.+|. ++.||+||+|+|++.+.+++ .+ .+++..+.+++++|.++.+|++.|+++.......++++
T Consensus 246 ~~~v~~~~G~----~~~ad~VI~a~p~~~~~~ll--~~~~~~~~~~~~~~l~~l~y~s~~~v~l~~~~~~~~~~~~~~~i 319 (484)
T 4dsg_A 246 AKTITFSNGE----VVSYDYLISTVPFDNLLRMT--KGTGFKGYDEWPAIADKMVYSSTNVIGIGVKGTPPPHLKTACWL 319 (484)
T ss_dssp TTEEEETTSC----EEECSEEEECSCHHHHHHHE--ECSSCTTGGGHHHHHHHCCEEEEEEEEEEEESCCCGGGTTCCEE
T ss_pred CCEEEECCCC----EEECCEEEECCCHHHHHHHh--hccCCCCCHHHHHHHhCCCcCceEEEEEEEcCCCcccCCCCeEE
Confidence 1134455664 78999999999999999994 43 44556677889999999999999997632111467899
Q ss_pred EecCCCCCCCCceEEEEecCCCCCCCCCCCceEEEEEecCCCCccccCCCchHHhh
Q 018468 298 LVPSKEQQNGLKTLGTLFSSMMFPDRVPKDLYLYTTFVGGSRNKELAKASTYKELQ 353 (355)
Q Consensus 298 l~~~~~~~~~~~~~~~~~~s~~~~~~~p~~~~~l~~~~~g~~~~~~~~~sd~e~~~ 353 (355)
++|+.+ .++..+++.++.+|..+|++++++++.++.. +...++|+|+++
T Consensus 320 ~vp~~~----~~~~ri~~~s~~~p~~ap~g~~~l~~e~~~~---~~~~~~d~~l~~ 368 (484)
T 4dsg_A 320 YFPEDT----SPFYRATVFSNYSKYNVPEGHWSLMLEVSES---KYKPVNHSTLIE 368 (484)
T ss_dssp ECCSTT----CSCSEEECGGGTCGGGSCTTEEEEEEEEEEB---TTBCCCTTSHHH
T ss_pred EEEcCC----CeEEEEEeecCCCcccCCCCeEEEEEEEecC---cCCcCCHHHHHH
Confidence 998764 4566778888888888888888888877654 456778888775
No 8
>1s3e_A Amine oxidase [flavin-containing] B; human monoamine oxidase, inhibitor binding, rasagiline, enantioselectivity, oxidoreductase; HET: FAD RHP; 1.60A {Homo sapiens} SCOP: c.3.1.2 d.16.1.5 PDB: 1gos_A* 1oj9_A* 1ojb_A* 1ojc_A* 1ojd_A* 1s2q_A* 1s2y_A* 1oja_A* 1s3b_A* 2bk3_A* 2byb_A* 2c64_A* 2c65_A* 2c66_A* 2c67_A* 2c70_A* 2v5z_A* 2v60_A* 2v61_A* 2vrl_A* ...
Probab=99.93 E-value=1.3e-25 Score=219.28 Aligned_cols=310 Identities=15% Similarity=0.127 Sum_probs=207.1
Q ss_pred CeeecCCCCCceEEEeecC-CeEEcccCCeeecCcHHHHHHHHHcCCccccccccCCCceEEEECCEEeecCCCch----
Q 018468 1 MVFEADERAGGKLRSISKD-GLIWDEGANTMTESEMEVKGLLDDLGIREKQQFPISQYKRYVVRNGVPFLIPTNPI---- 75 (355)
Q Consensus 1 ~vlEA~drvGGri~T~~~~-g~~~d~G~~~~~~~~~~~~~l~~~lGl~~~~~~~~~~~~~~i~~~g~~~~~p~~~~---- 75 (355)
+||||++|+|||++|.+.+ |+.+|+|++++.+.++.+.++++++|+...... ..+..+++.+|+.+.++....
T Consensus 31 ~vlE~~~~~GGr~~t~~~~~g~~~d~G~~~~~~~~~~~~~l~~~lgl~~~~~~--~~~~~~~~~~g~~~~~~~~~p~~~~ 108 (520)
T 1s3e_A 31 VVLEARDRVGGRTYTLRNQKVKYVDLGGSYVGPTQNRILRLAKELGLETYKVN--EVERLIHHVKGKSYPFRGPFPPVWN 108 (520)
T ss_dssp EEECSSSSSBTTCCEECCTTTSCEESSCCEECTTCHHHHHHHHHTTCCEEECC--CSSEEEEEETTEEEEECSSSCCCCS
T ss_pred EEEeCCCCCCCceeecccCCCcccccCceEecCCcHHHHHHHHHcCCcceecc--cCCceEEEECCEEEEecCCCCCCCC
Confidence 5899999999999999985 999999999888778899999999999875433 224455667887766543211
Q ss_pred --hhhh-cccCChhHHHHHhcccccccCCCcccccCCCCCCCHHHHHHHhhcHHHHHHHhhhhhhccccCCcccchHHhh
Q 018468 76 --ALLT-SNFLSAQSKFQIILEPFLWKKSDSAKVSAEDAKESVGGFFQRHFGREVVDFLIDPFVAGTSAGDPESLVMRHS 152 (355)
Q Consensus 76 --~~l~-~~~ls~~~~~~~~~~~~~~~~~~~~~~~~~~~~~sv~~~l~~~~~~~~~~~~~~p~~~~~~~~~~~~lS~~~~ 152 (355)
.... ..++ ..+..+...+....+.........+++|+.+|+.+++..+..+.++.+++.++|+.+++++|+.++
T Consensus 109 ~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~l~~~~~~~~~~~~~~~~~~~~~g~~~~~~s~~~~ 185 (520)
T 1s3e_A 109 PITYLDHNNFW---RTMDDMGREIPSDAPWKAPLAEEWDNMTMKELLDKLCWTESAKQLATLFVNLCVTAETHEVSALWF 185 (520)
T ss_dssp HHHHHHHHHHH---HHHHHHHTTSCTTCGGGSTTHHHHHTSBHHHHHHHHCSSHHHHHHHHHHHHHHHSSCTTTSBHHHH
T ss_pred HHHHHHHHHHH---HHHHHHHhhcCcCCCccccchhhhhccCHHHHHHhhCCCHHHHHHHHHHHhhhcCCChHHhHHHHH
Confidence 1100 0011 001111111100000000000124688999999999888888999999999999999999999877
Q ss_pred chHHHHHHHhhCchHHHHHHhhhhhhhhhhhhhcCchhhhcCCcceeEeCcchhhHHhhcccc-------C------ccc
Q 018468 153 FPELWNLEKRYGSVIAGAIKSKFSARKEKSAEAKGSSEKKRRQRGSFSFLGGMQVLSLSYSHD-------G------RSA 219 (355)
Q Consensus 153 l~~l~~~~~~~gs~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~gG~~~l~~~l~~~-------~------~~~ 219 (355)
+..+ +..+++.. .... ......+.+.||+++|+++++.. + ...
T Consensus 186 ~~~~----~~~g~~~~-~~~~-------------------~~~~~~~~~~gG~~~l~~~l~~~lg~~i~~~~~V~~i~~~ 241 (520)
T 1s3e_A 186 LWYV----KQCGGTTR-IIST-------------------TNGGQERKFVGGSGQVSERIMDLLGDRVKLERPVIYIDQT 241 (520)
T ss_dssp HHHH----HTTTCHHH-HHCS-------------------TTSTTSEEETTCTHHHHHHHHHHHGGGEESSCCEEEEECS
T ss_pred HHHH----hhcCchhh-hccc-------------------CCCcceEEEeCCHHHHHHHHHHHcCCcEEcCCeeEEEEEC
Confidence 5433 23444311 1100 01113568999999999876531 1 123
Q ss_pred CCCeEEEecCCCcccceeecCEEEEcCChhhhhHhhhccCCCC-cccCCCCCCCCcceEEEEEEecCCCCCCCCCce-EE
Q 018468 220 LENWSLCSSNQEKQSLGLSFDAVIMTAPLCNVKEMKITKGGNL-FPLDFLPEVIYMPLSVIITTFKKENVRRPLEGF-GV 297 (355)
Q Consensus 220 ~~~~~V~~~~g~~~~~~~~ad~VI~a~P~~~l~~l~~~~~~~~-~~~~~l~~~~~~~v~~v~l~~~~~~~~~~~~g~-g~ 297 (355)
.+++.|++.+|. ++.||+||+|+|+..+.+|+ +.|.+| ...++++++.|+++.||++.|++++|+. .++ |.
T Consensus 242 ~~~v~v~~~~g~----~~~ad~VI~a~p~~~l~~l~-~~p~lp~~~~~~i~~~~~~~~~kv~l~~~~~~w~~--~~~~g~ 314 (520)
T 1s3e_A 242 RENVLVETLNHE----MYEAKYVISAIPPTLGMKIH-FNPPLPMMRNQMITRVPLGSVIKCIVYYKEPFWRK--KDYCGT 314 (520)
T ss_dssp SSSEEEEETTSC----EEEESEEEECSCGGGGGGSE-EESCCCHHHHHHTTSCCBCCEEEEEEECSSCGGGG--GTEEEE
T ss_pred CCeEEEEECCCe----EEEeCEEEECCCHHHHccee-eCCCCCHHHHHHHHhCCCcceEEEEEEeCCCcccC--CCCCce
Confidence 456888887875 89999999999999999986 444444 4457889999999999999999998852 233 44
Q ss_pred EecCCCCCCCCceEEEEecCCCCCCCCCCCceEEEEEecCCCCccccCCCchHHhhc
Q 018468 298 LVPSKEQQNGLKTLGTLFSSMMFPDRVPKDLYLYTTFVGGSRNKELAKASTYKELQS 354 (355)
Q Consensus 298 l~~~~~~~~~~~~~~~~~~s~~~~~~~p~~~~~l~~~~~g~~~~~~~~~sd~e~~~~ 354 (355)
+++... ...+..+|+++.. +++..+|++|+++..++.+.+++++|+++.
T Consensus 315 ~~~~~~----~~~~~~~~d~~~~----~~~~~~l~~~~~~~~a~~~~~~~~~e~~~~ 363 (520)
T 1s3e_A 315 MIIDGE----EAPVAYTLDDTKP----EGNYAAIMGFILAHKARKLARLTKEERLKK 363 (520)
T ss_dssp EEECST----TCSCSEEEECCCT----TSCSCEEEEEEETHHHHHHTTSCHHHHHHH
T ss_pred eeccCC----CCceEEEeeCCCC----CCCCCEEEEEccchhhhhhhcCCHHHHHHH
Confidence 443222 1234467776532 222368899999887788889999987653
No 9
>2vvm_A Monoamine oxidase N; FAD, peroxisome, flavoprotein, oxidoreductase, enantioselectivity, directed evolution variant; HET: FAD; 1.85A {Aspergillus niger} PDB: 2vvl_A* 2vvl_G*
Probab=99.88 E-value=1.5e-23 Score=203.48 Aligned_cols=287 Identities=12% Similarity=0.064 Sum_probs=183.5
Q ss_pred CeeecCCCCCceEEEeecCCeEEcccCCeeecCcHHHHHHHHHcCCccccccc---cCCCceEEEEC--CEEeecCCC-c
Q 018468 1 MVFEADERAGGKLRSISKDGLIWDEGANTMTESEMEVKGLLDDLGIREKQQFP---ISQYKRYVVRN--GVPFLIPTN-P 74 (355)
Q Consensus 1 ~vlEA~drvGGri~T~~~~g~~~d~G~~~~~~~~~~~~~l~~~lGl~~~~~~~---~~~~~~~i~~~--g~~~~~p~~-~ 74 (355)
+|||+++|+|||++|.+.+|+.+|+|++++++.+++++++++++|+.+.+... ......|++.+ |+.+.+|.. .
T Consensus 66 ~v~E~~~~~GGr~~t~~~~g~~~d~G~~~~~~~~~~~~~~l~~lgl~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~ 145 (495)
T 2vvm_A 66 LLLEARDRIGGRSWSSNIDGYPYEMGGTWVHWHQSHVWREITRYKMHNALSPSFNFSRGVNHFQLRTNPTTSTYMTHEAE 145 (495)
T ss_dssp EEECSSSBSBTTCCEEEETTEEEECSCCCBCTTSHHHHHHHHHTTCTTCEEESCCCSSSCCEEEEESSTTCCEEECHHHH
T ss_pred EEEeCCCCCCCcceecccCCeeecCCCeEecCccHHHHHHHHHcCCcceeecccccCCCceEEEecCCCCceeecCHHHH
Confidence 58999999999999999999999999999988889999999999996544332 12234566666 666666531 1
Q ss_pred hhhhhcccCChhHHH-H----Hhccccc--ccCCCcccccCCCCCCCHHHHHHHhh--cHHHHHHHhhhhhhccccCCcc
Q 018468 75 IALLTSNFLSAQSKF-Q----IILEPFL--WKKSDSAKVSAEDAKESVGGFFQRHF--GREVVDFLIDPFVAGTSAGDPE 145 (355)
Q Consensus 75 ~~~l~~~~ls~~~~~-~----~~~~~~~--~~~~~~~~~~~~~~~~sv~~~l~~~~--~~~~~~~~~~p~~~~~~~~~~~ 145 (355)
...+.. ++ .++ + .....+. ....... .....+++|+.+|+.+.. ..+..+.++++++..+++.+++
T Consensus 146 ~~~~~~-~~---~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~s~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 220 (495)
T 2vvm_A 146 DELLRS-AL---HKFTNVDGTNGRTVLPFPHDMFYVP-EFRKYDEMSYSERIDQIRDELSLNERSSLEAFILLCSGGTLE 220 (495)
T ss_dssp HHHHHH-HH---HHHHCSSSSTTTTTCSCTTSTTSST-THHHHHTSBHHHHHHHHGGGCCHHHHHHHHHHHHHHHSSCTT
T ss_pred HHHHHH-HH---HHHHccchhhhhhcCCCCCCcccCc-chhhhhhhhHHHHHHHhhccCCHHHHHHHHHHHHHhcCCCcc
Confidence 111100 00 000 0 0000000 0000000 001235889999999864 2344578999999999999999
Q ss_pred cchHHhhchHHHHHHHhhCchHHHHHHhhhhhhhhhhhhhcCchhhhcCCcceeEeCcchhhHHhhccc----c------
Q 018468 146 SLVMRHSFPELWNLEKRYGSVIAGAIKSKFSARKEKSAEAKGSSEKKRRQRGSFSFLGGMQVLSLSYSH----D------ 215 (355)
Q Consensus 146 ~lS~~~~l~~l~~~~~~~gs~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~gG~~~l~~~l~~----~------ 215 (355)
++|+..+++.+... .+++ .+... ..+.+.++||++++++++.. .
T Consensus 221 ~~s~~~~~~~~~~~---~~~~-~~~~~----------------------~~~~~~~~gG~~~l~~~l~~~l~~~g~~~i~ 274 (495)
T 2vvm_A 221 NSSFGEFLHWWAMS---GYTY-QGCMD----------------------CLMSYKFKDGQSAFARRFWEEAAGTGRLGYV 274 (495)
T ss_dssp TSBHHHHHHHHHHT---TSSH-HHHHH----------------------HHHSEEETTCHHHHHHHHHHHHHTTTCEEEE
T ss_pred hhhHHHHHHHHHHc---CCCH-HHHHh----------------------hhceEEeCCCHHHHHHHHHHHhhhcCceEEE
Confidence 99998887655321 1111 11110 01357899999999876532 1
Q ss_pred -C------cccCCCeEEEecCCCcccceeecCEEEEcCChhhhhHhhhccCCCC-cccCCCCCCCCcceEEEEEEecCCC
Q 018468 216 -G------RSALENWSLCSSNQEKQSLGLSFDAVIMTAPLCNVKEMKITKGGNL-FPLDFLPEVIYMPLSVIITTFKKEN 287 (355)
Q Consensus 216 -~------~~~~~~~~V~~~~g~~~~~~~~ad~VI~a~P~~~l~~l~~~~~~~~-~~~~~l~~~~~~~v~~v~l~~~~~~ 287 (355)
+ ....+++.|++.+|. ++.||+||+|+|+.++.+|. +.|.+| ...++++++.|.++.||++.|++++
T Consensus 275 ~~~~V~~i~~~~~~v~v~~~~g~----~~~ad~vI~a~~~~~l~~i~-~~p~lp~~~~~ai~~~~~~~~~kv~l~~~~~~ 349 (495)
T 2vvm_A 275 FGCPVRSVVNERDAARVTARDGR----EFVAKRVVCTIPLNVLSTIQ-FSPALSTERISAMQAGHVSMCTKVHAEVDNKD 349 (495)
T ss_dssp SSCCEEEEEECSSSEEEEETTCC----EEEEEEEEECCCGGGGGGSE-EESCCCHHHHHHHHHCCCCCCEEEEEEESCGG
T ss_pred eCCEEEEEEEcCCEEEEEECCCC----EEEcCEEEECCCHHHHhhee-eCCCCCHHHHHHHHhcCCCceeEEEEEECCcc
Confidence 1 112356788877764 78999999999999999985 444344 4456788899999999999999887
Q ss_pred CCCCCCceEEEecCCCCCCCCceEEEEecCCCCCCCCCCCceEEEEEecC
Q 018468 288 VRRPLEGFGVLVPSKEQQNGLKTLGTLFSSMMFPDRVPKDLYLYTTFVGG 337 (355)
Q Consensus 288 ~~~~~~g~g~l~~~~~~~~~~~~~~~~~~s~~~~~~~p~~~~~l~~~~~g 337 (355)
|. ++..+..... .+..+|+... .|++..+|++|++.
T Consensus 350 ~~----~~~g~~~~~~------~~~~~~~~~~----~~~~~~vl~~~~~~ 385 (495)
T 2vvm_A 350 MR----SWTGIAYPFN------KLCYAIGDGT----TPAGNTHLVCFGNS 385 (495)
T ss_dssp GG----GEEEEECSSC------SSCEEEEEEE----CTTSCEEEEEEECS
T ss_pred CC----CceeEecCCC------CcEEEecCCC----CCCCCeEEEEEeCc
Confidence 63 3433333221 1245665432 24455678888754
No 10
>3ka7_A Oxidoreductase; structural genomics, PSI-2, protein structure initiative, northeast structural genomics consortium, NESG; HET: FAD; 1.80A {Methanosarcina mazei}
Probab=99.88 E-value=2.8e-22 Score=190.59 Aligned_cols=274 Identities=14% Similarity=0.072 Sum_probs=195.5
Q ss_pred CeeecCCCCCceEEEeecCCeEEcccCCeeec--CcHHHHHHHHHcCCccccccccCCCceEEEEC-----------CEE
Q 018468 1 MVFEADERAGGKLRSISKDGLIWDEGANTMTE--SEMEVKGLLDDLGIREKQQFPISQYKRYVVRN-----------GVP 67 (355)
Q Consensus 1 ~vlEA~drvGGri~T~~~~g~~~d~G~~~~~~--~~~~~~~l~~~lGl~~~~~~~~~~~~~~i~~~-----------g~~ 67 (355)
+|||+++++||++.|+..+|+.+|.|++++.+ .++.+.++++++|+...+.... ..+++.+ ++.
T Consensus 27 ~vlE~~~~~GG~~~~~~~~G~~~d~G~~~~~~~~~~~~~~~l~~~lg~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~ 103 (425)
T 3ka7_A 27 EVFERLPITGGRFTNLSYKGFQLSSGAFHMLPNGPGGPLACFLKEVEASVNIVRSE---MTTVRVPLKKGNPDYVKGFKD 103 (425)
T ss_dssp EEECSSSSSBTTSSEEEETTEEEESSSCSCBTTGGGSHHHHHHHHTTCCCCEEECC---CCEEEEESSTTCCSSTTCEEE
T ss_pred EEEeCCCCCCCceeeeccCCcEEcCCCceEecCCCccHHHHHHHHhCCCceEEecC---CceEEeecCCCcccccccccc
Confidence 58999999999999999999999999987754 3567899999999987654322 2223332 444
Q ss_pred eecCCCchhhhhcccCChhHHHHHhcccccccCCCcccccCCCCCCCHHHHHHHhhcHHHHHHHhhhhhhccccCCcccc
Q 018468 68 FLIPTNPIALLTSNFLSAQSKFQIILEPFLWKKSDSAKVSAEDAKESVGGFFQRHFGREVVDFLIDPFVAGTSAGDPESL 147 (355)
Q Consensus 68 ~~~p~~~~~~l~~~~ls~~~~~~~~~~~~~~~~~~~~~~~~~~~~~sv~~~l~~~~~~~~~~~~~~p~~~~~~~~~~~~l 147 (355)
+.++. + ...+++.++.++......... ...++.|+.+|+.++++.+..+.+++|++.++++.+++++
T Consensus 104 ~~~~~----~--~~~~~~~~~~~~~~~~~~~~~-------~~~~~~s~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 170 (425)
T 3ka7_A 104 ISFND----F--PSLLSYKDRMKIALLIVSTRK-------NRPSGSSLQAWIKSQVSDEWLIKFADSFCGWALSLKSDEV 170 (425)
T ss_dssp EEGGG----G--GGGSCHHHHHHHHHHHHHTTT-------SCCCSSBHHHHHHHHCCCHHHHHHHHHHHHHHHSSCGGGS
T ss_pred eehhh----h--hhhCCHHHHHHHHHHHHhhhh-------cCCCCCCHHHHHHHhcCCHHHHHHHHHHHHHHhCCCcccc
Confidence 44432 1 134566677665554332111 1345799999999999999999999999999999999999
Q ss_pred hHHhhchHHHHHHHhhCchHHHHHHhhhhhhhhhhhhhcCchhhhcCCcceeEeCcchhhHHhhcccc----C------c
Q 018468 148 VMRHSFPELWNLEKRYGSVIAGAIKSKFSARKEKSAEAKGSSEKKRRQRGSFSFLGGMQVLSLSYSHD----G------R 217 (355)
Q Consensus 148 S~~~~l~~l~~~~~~~gs~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~gG~~~l~~~l~~~----~------~ 217 (355)
|+.++++.+...+. .. +.+.++||++.|.++|+.. + .
T Consensus 171 s~~~~~~~~~~~~~-------------------------------~~--~~~~~~gG~~~l~~~l~~~~~~~G~~i~~~~ 217 (425)
T 3ka7_A 171 PVEEVFEIIENMYR-------------------------------FG--GTGIPEGGCKGIIDALETVISANGGKIHTGQ 217 (425)
T ss_dssp BHHHHHHHHHHHHH-------------------------------HC--SCEEETTSHHHHHHHHHHHHHHTTCEEECSC
T ss_pred hHHHHHHHHHHHHh-------------------------------cC--CccccCCCHHHHHHHHHHHHHHcCCEEEECC
Confidence 99887765543210 00 2457899999998776421 1 1
Q ss_pred ------ccCCCeE-EEecCCCcccceeecCEEEEcCChhhhhHhhhccCC-----CCcccCCCCCCCCcceEEEEEEecC
Q 018468 218 ------SALENWS-LCSSNQEKQSLGLSFDAVIMTAPLCNVKEMKITKGG-----NLFPLDFLPEVIYMPLSVIITTFKK 285 (355)
Q Consensus 218 ------~~~~~~~-V~~~~g~~~~~~~~ad~VI~a~P~~~l~~l~~~~~~-----~~~~~~~l~~~~~~~v~~v~l~~~~ 285 (355)
...+++. |++. |. ++.||+||+|+|+..+.+|+ ++. +++..+.+++++++++.+|++.|++
T Consensus 218 ~V~~i~~~~~~~~gv~~~-g~----~~~ad~VV~a~~~~~~~~ll--~~~~~~~~~~~~~~~~~~~~~~~~~~v~l~~~~ 290 (425)
T 3ka7_A 218 EVSKILIENGKAAGIIAD-DR----IHDADLVISNLGHAATAVLC--SEALSKEADAAYFKMVGTLQPSAGIKICLAADE 290 (425)
T ss_dssp CEEEEEEETTEEEEEEET-TE----EEECSEEEECSCHHHHHHHT--TTTCCTTTTHHHHHHHHHCCCBEEEEEEEEESS
T ss_pred ceeEEEEECCEEEEEEEC-CE----EEECCEEEECCCHHHHHHhc--CCcccccCCHHHHHHhhCcCCCceEEEEeecCC
Confidence 1223344 5543 43 89999999999999999984 322 2223456677889999999999998
Q ss_pred CCCCCCCCceEEEecCCCCCCCCceEEEEecCCCCCCCCCCCceEEEEEecCC
Q 018468 286 ENVRRPLEGFGVLVPSKEQQNGLKTLGTLFSSMMFPDRVPKDLYLYTTFVGGS 338 (355)
Q Consensus 286 ~~~~~~~~g~g~l~~~~~~~~~~~~~~~~~~s~~~~~~~p~~~~~l~~~~~g~ 338 (355)
+.+ .+++++++... ..+.++++.|.++|.++|+|++++.+++...
T Consensus 291 ~~~----~~~~~~~~~~~----~~~~~~~~~s~~~p~~ap~G~~~l~~~~~~~ 335 (425)
T 3ka7_A 291 PLV----GHTGVLLTPYT----RRINGVNEVTQADPELAPPGKHLTMCHQYVA 335 (425)
T ss_dssp CSS----CSSSEEECCSS----SSEEEEECGGGTCGGGSCTTCEEEEEEEEEC
T ss_pred Ccc----CcCEEEECCCh----hhcceEEeccCCCCCcCCCCCeEEEEEeccc
Confidence 643 35566666543 4577899999999999999999988887654
No 11
>2yg5_A Putrescine oxidase; oxidoreductase, flavin; HET: FAD; 1.90A {Rhodococcus erythropolis} PDB: 2yg6_A* 2yg3_A* 2yg4_A* 2yg7_A* 3rha_A*
Probab=99.88 E-value=2.9e-23 Score=199.15 Aligned_cols=303 Identities=14% Similarity=0.149 Sum_probs=196.7
Q ss_pred CeeecCCCCCceEEEeecCCeEEcccCCeeecCcHHHHHHHHHcCCccccccccCCCceEEEEC-CEEeecCC-----Cc
Q 018468 1 MVFEADERAGGKLRSISKDGLIWDEGANTMTESEMEVKGLLDDLGIREKQQFPISQYKRYVVRN-GVPFLIPT-----NP 74 (355)
Q Consensus 1 ~vlEA~drvGGri~T~~~~g~~~d~G~~~~~~~~~~~~~l~~~lGl~~~~~~~~~~~~~~i~~~-g~~~~~p~-----~~ 74 (355)
+|||+++++||+++|.+.+|+.+|.|++++...++.+.++++++|+...... ..+..+++.+ |+.+.++. ++
T Consensus 32 ~v~E~~~~~GG~~~~~~~~g~~~~~g~~~~~~~~~~~~~~~~~~g~~~~~~~--~~~~~~~~~~~g~~~~~~~~~~~~~~ 109 (453)
T 2yg5_A 32 AVIEARDRVGGRTWTDTIDGAVLEIGGQWVSPDQTALISLLDELGLKTFERY--REGESVYISSAGERTRYTGDSFPTNE 109 (453)
T ss_dssp EEECSSSSSCTTCCEEEETTEEEECSCCCBCTTCHHHHHHHHHTTCCEEECC--CCSEEEEECTTSCEEEECSSSCSCCH
T ss_pred EEEECCCCCCCceeccccCCceeccCCeEecCccHHHHHHHHHcCCcccccc--cCCCEEEEeCCCceeeccCCCCCCCh
Confidence 5899999999999999989999999999887778889999999999864332 1222333333 55444321 11
Q ss_pred hhhhhcccCChhHHHHHhccccc----ccCCCcccccCCCCCCCHHHHHHHhhcHHHHHHHhhhhhhccccCCcc-cchH
Q 018468 75 IALLTSNFLSAQSKFQIILEPFL----WKKSDSAKVSAEDAKESVGGFFQRHFGREVVDFLIDPFVAGTSAGDPE-SLVM 149 (355)
Q Consensus 75 ~~~l~~~~ls~~~~~~~~~~~~~----~~~~~~~~~~~~~~~~sv~~~l~~~~~~~~~~~~~~p~~~~~~~~~~~-~lS~ 149 (355)
..... +......+..+...+. +.... ....+++|+.+|+.+++..+..+.++.+++.+.|+.+++ ++|+
T Consensus 110 ~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~----~~~~~~~s~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~ 183 (453)
T 2yg5_A 110 TTKKE--MDRLIDEMDDLAAQIGAEEPWAHPL----ARDLDTVSFKQWLINQSDDAEARDNIGLFIAGGMLTKPAHSFSA 183 (453)
T ss_dssp HHHHH--HHHHHHHHHHHHHHHCSSCGGGSTT----HHHHHSSBHHHHHHHHCSCHHHHHHHHHHHCCCCCCSCTTSSBH
T ss_pred hhHHH--HHHHHHHHHHHHhhcCCCCCCCCcc----hhhhhhccHHHHHHhhcCCHHHHHHHHHHHHhhcccCCcccccH
Confidence 11100 0000001111111010 00100 012358899999999888888888999999999999999 9999
Q ss_pred HhhchHHHHHHHhhCchHHHHHHhhhhhhhhhhhhhcCchhhhcCCcceeEeCcchhhHHhhcccc-------Cc-----
Q 018468 150 RHSFPELWNLEKRYGSVIAGAIKSKFSARKEKSAEAKGSSEKKRRQRGSFSFLGGMQVLSLSYSHD-------GR----- 217 (355)
Q Consensus 150 ~~~l~~l~~~~~~~gs~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~gG~~~l~~~l~~~-------~~----- 217 (355)
.+++..+. ..|++.. .+.. .....+.++||+++|+++++.. +.
T Consensus 184 ~~~~~~~~----~~g~~~~-~~~~--------------------~~~~~~~~~gG~~~l~~~l~~~lg~~i~~~~~V~~i 238 (453)
T 2yg5_A 184 LQAVLMAA----SAGSFSH-LVDE--------------------DFILDKRVIGGMQQVSIRMAEALGDDVFLNAPVRTV 238 (453)
T ss_dssp HHHHHHHH----HTTCHHH-HHCH--------------------HHHTCEEETTCTHHHHHHHHHHHGGGEECSCCEEEE
T ss_pred HHHHHHhc----cCCcHhh-hccC--------------------CCcceEEEcCChHHHHHHHHHhcCCcEEcCCceEEE
Confidence 88765442 2344311 1100 0012568999999999876532 11
Q ss_pred -ccCCC-eEEEecCCCcccceeecCEEEEcCChhhhhHhhhccCCCC-cccCCCCCCCCcceEEEEEEecCCCCCCCCCc
Q 018468 218 -SALEN-WSLCSSNQEKQSLGLSFDAVIMTAPLCNVKEMKITKGGNL-FPLDFLPEVIYMPLSVIITTFKKENVRRPLEG 294 (355)
Q Consensus 218 -~~~~~-~~V~~~~g~~~~~~~~ad~VI~a~P~~~l~~l~~~~~~~~-~~~~~l~~~~~~~v~~v~l~~~~~~~~~~~~g 294 (355)
...++ +.|++ +|. ++.||+||+|+|+.++.+|+ +.+..| ...++++++.++++.||++.|++++|+. .+
T Consensus 239 ~~~~~~~v~v~~-~~~----~~~ad~VI~a~p~~~~~~l~-~~p~lp~~~~~~i~~~~~~~~~kv~l~~~~~~w~~--~~ 310 (453)
T 2yg5_A 239 KWNESGATVLAD-GDI----RVEASRVILAVPPNLYSRIS-YDPPLPRRQHQMHQHQSLGLVIKVHAVYETPFWRE--DG 310 (453)
T ss_dssp EEETTEEEEEET-TTE----EEEEEEEEECSCGGGGGGSE-EESCCCHHHHHHGGGEEECCEEEEEEEESSCGGGG--GT
T ss_pred EEeCCceEEEEE-CCe----EEEcCEEEEcCCHHHHhcCE-eCCCCCHHHHHHHhcCCCcceEEEEEEECCCCCCC--CC
Confidence 12345 67765 443 88999999999999999985 444444 4456788899999999999999988852 23
Q ss_pred -eEEEecCCCCCCCCceEEEEecCCCCCCCCCCCceEEEEEecCCCCccccCCCchHHhhc
Q 018468 295 -FGVLVPSKEQQNGLKTLGTLFSSMMFPDRVPKDLYLYTTFVGGSRNKELAKASTYKELQS 354 (355)
Q Consensus 295 -~g~l~~~~~~~~~~~~~~~~~~s~~~~~~~p~~~~~l~~~~~g~~~~~~~~~sd~e~~~~ 354 (355)
.|.+++... ...++|+++..+ ++..++++|+++..++.+.+++++|+++.
T Consensus 311 ~~g~~~~~~~------~~~~~~~~~~~~----~~~~~l~~~~~~~~~~~~~~~~~~~~~~~ 361 (453)
T 2yg5_A 311 LSGTGFGASE------VVQEVYDNTNHE----DDRGTLVAFVSDEKADAMFELSAEERKAT 361 (453)
T ss_dssp EEEEEECTTS------SSCEEEECCCTT----CSSEEEEEEEEHHHHHHHHHSCHHHHHHH
T ss_pred CCceeecCCC------CeEEEEeCCCCC----CCCCEEEEEeccHHHHHHhcCCHHHHHHH
Confidence 344443321 234667765221 12468999998877778888899887653
No 12
>3nrn_A Uncharacterized protein PF1083; alpha-beta protein, structural genomics, PSI-2, protein STRU initiative; HET: AMP; 2.10A {Pyrococcus furiosus}
Probab=99.86 E-value=7.9e-21 Score=180.52 Aligned_cols=275 Identities=13% Similarity=0.069 Sum_probs=190.6
Q ss_pred CeeecCCCCCceEEEeecCCeEEcccCCeeec--CcHHHHHHHHHcCCccccccccCCCceEEEECCEEeecCCCchhhh
Q 018468 1 MVFEADERAGGKLRSISKDGLIWDEGANTMTE--SEMEVKGLLDDLGIREKQQFPISQYKRYVVRNGVPFLIPTNPIALL 78 (355)
Q Consensus 1 ~vlEA~drvGGri~T~~~~g~~~d~G~~~~~~--~~~~~~~l~~~lGl~~~~~~~~~~~~~~i~~~g~~~~~p~~~~~~l 78 (355)
+|||+++++||++.|...+|+.+|.|++++.+ .++.+.++++++|+...+.... ....++.+|+.+.+|...
T Consensus 27 ~vlE~~~~~GG~~~~~~~~g~~~d~G~~~~~~~~~~~~~~~l~~~lg~~~~~~~~~--~~~~~~~~g~~~~~~~~~---- 100 (421)
T 3nrn_A 27 IVLEKSAMIGGRFTNLPYKGFQLSTGALHMIPHGEDGPLAHLLRILGAKVEIVNSN--PKGKILWEGKIFHYRESW---- 100 (421)
T ss_dssp EEECSSSSSCTTSSEEEETTEEEESSSCSEETTTTSSHHHHHHHHHTCCCCEEECS--SSCEEEETTEEEEGGGGG----
T ss_pred EEEeCCCCCCceeEEeccCCEEEecCCeEEEccCCChHHHHHHHHhCCcceEEECC--CCeEEEECCEEEEcCCch----
Confidence 58999999999999999999999999987764 3568999999999976544322 234455688887776421
Q ss_pred hcccCChhHHHHHhcccccccCCCcccccCCCCCCCHHHHHHHh-hcHHHHHHHhhhhhhccccCCcccchHHhhchHHH
Q 018468 79 TSNFLSAQSKFQIILEPFLWKKSDSAKVSAEDAKESVGGFFQRH-FGREVVDFLIDPFVAGTSAGDPESLVMRHSFPELW 157 (355)
Q Consensus 79 ~~~~ls~~~~~~~~~~~~~~~~~~~~~~~~~~~~~sv~~~l~~~-~~~~~~~~~~~p~~~~~~~~~~~~lS~~~~l~~l~ 157 (355)
..+++.++.++........... ...++.|+.+|+.++ ++.+..+.++.|++.++++.++.++|+.++++.+.
T Consensus 101 --~~l~~~~~~~~~~~~~~~~~~~-----~~~~~~s~~~~l~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 173 (421)
T 3nrn_A 101 --KFLSVKEKAKALKLLAEIRMNK-----LPKEEIPADEWIKEKIGENEFLLSVLESFAGWADSVSLSDLTALELAKEIR 173 (421)
T ss_dssp --GGCC--------CCHHHHHTTC-----CCCCCSBHHHHHHHHTCCCHHHHHHHHHHHHHHHSSCGGGSBHHHHHHHHH
T ss_pred --hhCCHhHHHHHHHHHHHHHhcc-----CCCCCCCHHHHHHHhcCCcHHHHHHHHHHHHHhcCCCcccCCHHHHHHHHH
Confidence 2344445544433221111100 123468999999998 89888999999999999999999999988876554
Q ss_pred HHHHhhCchHHHHHHhhhhhhhhhhhhhcCchhhhcCCcceeEeCcchhhHHhhcccc----C------c------ccCC
Q 018468 158 NLEKRYGSVIAGAIKSKFSARKEKSAEAKGSSEKKRRQRGSFSFLGGMQVLSLSYSHD----G------R------SALE 221 (355)
Q Consensus 158 ~~~~~~gs~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~gG~~~l~~~l~~~----~------~------~~~~ 221 (355)
..+. .. +.+.++||++.++++++.. + . ..++
T Consensus 174 ~~~~-------------------------------~~--g~~~~~gG~~~l~~~l~~~~~~~G~~i~~~~~V~~i~~~~~ 220 (421)
T 3nrn_A 174 AALR-------------------------------WG--GPGLIRGGCKAVIDELERIIMENKGKILTRKEVVEINIEEK 220 (421)
T ss_dssp HHHH-------------------------------HC--SCEEETTCHHHHHHHHHHHHHTTTCEEESSCCEEEEETTTT
T ss_pred HHhh-------------------------------cC--CcceecCCHHHHHHHHHHHHHHCCCEEEcCCeEEEEEEECC
Confidence 3210 01 2457899999998876421 1 1 1233
Q ss_pred CeEEEecCCCcccceeecCEEEEcCChhhhhHhhhccCCCCcccCCCCCCCCcceEEEEEEecCCCCCCCCCceEEEecC
Q 018468 222 NWSLCSSNQEKQSLGLSFDAVIMTAPLCNVKEMKITKGGNLFPLDFLPEVIYMPLSVIITTFKKENVRRPLEGFGVLVPS 301 (355)
Q Consensus 222 ~~~V~~~~g~~~~~~~~ad~VI~a~P~~~l~~l~~~~~~~~~~~~~l~~~~~~~v~~v~l~~~~~~~~~~~~g~g~l~~~ 301 (355)
+| |+ .+|. ++.||+||+|+|+..+.+|+..+..+++..+.++++++.++.+|++.++++. ....++++++
T Consensus 221 ~v-V~-~~g~----~~~ad~Vv~a~~~~~~~~ll~~~~~~~~~~~~~~~~~~~~~~~v~l~~~~~~----~~~~~~~~~~ 290 (421)
T 3nrn_A 221 KV-YT-RDNE----EYSFDVAISNVGVRETVKLIGRDYFDRDYLKQVDSIEPSEGIKFNLAVPGEP----RIGNTIVFTP 290 (421)
T ss_dssp EE-EE-TTCC----EEECSEEEECSCHHHHHHHHCGGGSCHHHHHHHHTCCCCCEEEEEEEEESSC----SSCSSEEECT
T ss_pred EE-EE-eCCc----EEEeCEEEECCCHHHHHHhcCcccCCHHHHHHHhCCCCCceEEEEEEEcCCc----ccCCeEEEcC
Confidence 46 54 4554 8999999999999999998511123334455677888999999999999863 2345566665
Q ss_pred CCCCCCCceEEEEecCCCCCCCCCCCceEEEEEec
Q 018468 302 KEQQNGLKTLGTLFSSMMFPDRVPKDLYLYTTFVG 336 (355)
Q Consensus 302 ~~~~~~~~~~~~~~~s~~~~~~~p~~~~~l~~~~~ 336 (355)
+. . +.++.+.|.++|..+|+|++++.++..
T Consensus 291 ~~----~-~~~i~~~s~~~p~~ap~G~~~~~~~~~ 320 (421)
T 3nrn_A 291 GL----M-INGFNEPSALDKSLAREGYTLIMAHMA 320 (421)
T ss_dssp TS----S-SCEEECGGGTCGGGSCTTEEEEEEEEE
T ss_pred Cc----c-eeeEeccCCCCCCcCCCCceEEEEEEe
Confidence 43 2 668899999999889988888777663
No 13
>1v0j_A UDP-galactopyranose mutase; flavoprotein, isomerase; HET: FAD BCN; 2.25A {Mycobacterium tuberculosis}
Probab=99.81 E-value=1.7e-19 Score=170.07 Aligned_cols=268 Identities=13% Similarity=0.104 Sum_probs=172.5
Q ss_pred CeeecCCCCCceEEEeec--CCeEE-cccCCeeecCcHHHHHHHHHcCCccccccccCCCceEEEECCEEeecCCCchhh
Q 018468 1 MVFEADERAGGKLRSISK--DGLIW-DEGANTMTESEMEVKGLLDDLGIREKQQFPISQYKRYVVRNGVPFLIPTNPIAL 77 (355)
Q Consensus 1 ~vlEA~drvGGri~T~~~--~g~~~-d~G~~~~~~~~~~~~~l~~~lGl~~~~~~~~~~~~~~i~~~g~~~~~p~~~~~~ 77 (355)
+|||+++++||+++|... +|+.+ |.|+|+++..++.++++++++|+-. ......+++.+|+.+++|.+...+
T Consensus 35 ~v~E~~~~~GG~~~~~~~~~~g~~~~~~G~~~~~~~~~~~~~~~~~~g~~~-----~~~~~~~~~~~G~~~~~p~~~~~~ 109 (399)
T 1v0j_A 35 LVLERRPHIGGNAYSEAEPQTGIEVHKYGAHLFHTSNKRVWDYVRQFTDFT-----DYRHRVFAMHNGQAYQFPMGLGLV 109 (399)
T ss_dssp EEECSSSSSSGGGCEEECTTTCCEEETTSCCCEEESCHHHHHHHTTTCCBC-----CCCCCEEEEETTEEEEESSSHHHH
T ss_pred EEEeCCCCCCCeeeeccccCCCEEEEeCCCcEEcCCcHHHHHHHHHhhhhh-----ccccceEEEECCEEEeCCCCHHHH
Confidence 589999999999999987 78888 5999999888999999999999732 112346778899999998764322
Q ss_pred ---hhcccCChhHHHH-HhcccccccCCCcccccCCCCCCCHHHHHHHhhcHHHHHHHhhhhhhccccCCcccchHHhh-
Q 018468 78 ---LTSNFLSAQSKFQ-IILEPFLWKKSDSAKVSAEDAKESVGGFFQRHFGREVVDFLIDPFVAGTSAGDPESLVMRHS- 152 (355)
Q Consensus 78 ---l~~~~ls~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~sv~~~l~~~~~~~~~~~~~~p~~~~~~~~~~~~lS~~~~- 152 (355)
+... ++ .++++ ++.+.+. .. ...+++|+++|+.+++++++.+.++.|++.++|+.+++++|+.++
T Consensus 110 ~~l~~~~-~~-~~~~~~~l~~~~~--~~------~~~~~~s~~e~l~~~~g~~~~~~~~~~~~~~~~~~~~~~ls~~~~~ 179 (399)
T 1v0j_A 110 SQFFGKY-FT-PEQARQLIAEQAA--EI------DTADAQNLEEKAISLIGRPLYEAFVKGYTAKQWQTDPKELPAANIT 179 (399)
T ss_dssp HHHHTSC-CC-HHHHHHHHHHHGG--GS------CTTC----CCHHHHHHCHHHHHHHTHHHHHHHHTSCGGGSCGGGCS
T ss_pred HHHhccc-CC-HHHHHHHHHHHhh--cc------CCCCcccHHHHHHHHHhHHHHHHHHHHHHHhhcCCChhhcChHhhh
Confidence 2111 12 23333 3333221 10 124678999999999999999999999999999999999998876
Q ss_pred -chHHHHHHHhhCchHHHHHHhhhhhhhhhhhhhcCchhhhcCCcce-eEeCcchhhHHhhccccCcccCCCeEEEecCC
Q 018468 153 -FPELWNLEKRYGSVIAGAIKSKFSARKEKSAEAKGSSEKKRRQRGS-FSFLGGMQVLSLSYSHDGRSALENWSLCSSNQ 230 (355)
Q Consensus 153 -l~~l~~~~~~~gs~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~gG~~~l~~~l~~~~~~~~~~~~V~~~~g 230 (355)
++.... . . ........ ..++||+++|+++|+.. .+..|.++..
T Consensus 180 ~~~~~~~-------~-------------~----------~~~~~~~~~~~p~gG~~~l~~~l~~~-----~g~~I~l~~~ 224 (399)
T 1v0j_A 180 RLPVRYT-------F-------------D----------NRYFSDTYEGLPTDGYTAWLQNMAAD-----HRIEVRLNTD 224 (399)
T ss_dssp CCCCCSS-------S-------------C----------CCSCCCSEEECBTTHHHHHHHHHTCS-----TTEEEECSCC
T ss_pred cceeEec-------c-------------c----------cchhhhhhcccccccHHHHHHHHHhc-----CCeEEEECCc
Confidence 221100 0 0 00000012 27899999999998752 1233443111
Q ss_pred -Cc---cccee-ecCEEEEcCChhhhhHhhhccCCCCcccCCCCCCCCcceEEEEEEecCCCCCCCCCceEEEecCCCCC
Q 018468 231 -EK---QSLGL-SFDAVIMTAPLCNVKEMKITKGGNLFPLDFLPEVIYMPLSVIITTFKKENVRRPLEGFGVLVPSKEQQ 305 (355)
Q Consensus 231 -~~---~~~~~-~ad~VI~a~P~~~l~~l~~~~~~~~~~~~~l~~~~~~~v~~v~l~~~~~~~~~~~~g~g~l~~~~~~~ 305 (355)
.. ..+++ .||+||+|+|++.+.++ .+.+++|.++..+.+.++.+.+. + ...+..|+.+
T Consensus 225 V~~I~~~v~~~~~aD~VI~t~p~~~l~~~------------~l~~l~y~s~~~~~~~~~~~~~~-~--~~~~~~~~~~-- 287 (399)
T 1v0j_A 225 WFDVRGQLRPGSPAAPVVYTGPLDRYFDY------------AEGRLGWRTLDFEVEVLPIGDFQ-G--TAVMNYNDLD-- 287 (399)
T ss_dssp HHHHHHHHTTTSTTCCEEECSCHHHHTTT------------TTCCCCEEEEEEEEEEESSSCSS-S--SSEEEECCTT--
T ss_pred hhhhhhhhhhcccCCEEEECCcHHHHHhh------------hhCCCCcceEEEEEEEEccccCC-C--CeEEEeCCCC--
Confidence 00 00124 79999999999987765 24568999999999999865332 1 1233345432
Q ss_pred CCCceEEEEecCCCCCCCC-CCCceEEEEEecC
Q 018468 306 NGLKTLGTLFSSMMFPDRV-PKDLYLYTTFVGG 337 (355)
Q Consensus 306 ~~~~~~~~~~~s~~~~~~~-p~~~~~l~~~~~g 337 (355)
.+...+++.++..|... |.++.+++.-..+
T Consensus 288 --~~~~ri~~~~~~~~~~~~~~~~~~v~~e~~~ 318 (399)
T 1v0j_A 288 --VPYTRIHEFRHFHPERDYPTDKTVIMREYSR 318 (399)
T ss_dssp --SSCSEEEEGGGGCTTSCCCSSCEEEEEEEEE
T ss_pred --CCcceeEeecCCCCCCcCCCCCeEEEEeecc
Confidence 33446677666446554 4455666665543
No 14
>2jae_A L-amino acid oxidase; oxidoreductase, dimerisation mode, hydride transfer mechanism, GR2-family, flavoenzyme, FAD containing; HET: FAD; 1.25A {Rhodococcus opacus} PDB: 2jb1_A* 2jb2_A* 2jb3_A*
Probab=99.81 E-value=2.4e-22 Score=194.61 Aligned_cols=314 Identities=13% Similarity=0.145 Sum_probs=179.5
Q ss_pred CeeecCCCCCceEEEeec-----------------CCeEEcccCCeeecCcHHHHHHHHHcCCccccccccCCCceEEE-
Q 018468 1 MVFEADERAGGKLRSISK-----------------DGLIWDEGANTMTESEMEVKGLLDDLGIREKQQFPISQYKRYVV- 62 (355)
Q Consensus 1 ~vlEA~drvGGri~T~~~-----------------~g~~~d~G~~~~~~~~~~~~~l~~~lGl~~~~~~~~~~~~~~i~- 62 (355)
+|||+++|+||+++|.+. +|..+|.|++++...+ .++++++++|+...... ......+++
T Consensus 38 ~v~E~~~~~GG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~-~~~~~~~~~g~~~~~~~-~~~~~~~~~~ 115 (489)
T 2jae_A 38 TVLEARTRPGGRVWTARGGSEETDLSGETQKCTFSEGHFYNVGATRIPQSH-ITLDYCRELGVEIQGFG-NQNANTFVNY 115 (489)
T ss_dssp EEECSSSSSCTTCCEEETTCEEECTTSCEEECCCCTTCEEESSCCCEETTS-THHHHHHHHTCCEEEEC-CCCTTSEEEC
T ss_pred EEEeccCCCCCceeeeccCcccccccchhhhhcccCCCcCCcchhhcccHH-HHHHHHHHcCCceEEcc-ccCCCceEEe
Confidence 589999999999999875 5789999999888767 89999999999864332 222346666
Q ss_pred EC-----CEEeecCCCchhhhhcccCChhHHHHHhcc--cccccCCCcccccCCCCCCCHHHHHHHhhcHHHHHHHhhhh
Q 018468 63 RN-----GVPFLIPTNPIALLTSNFLSAQSKFQIILE--PFLWKKSDSAKVSAEDAKESVGGFFQRHFGREVVDFLIDPF 135 (355)
Q Consensus 63 ~~-----g~~~~~p~~~~~~l~~~~ls~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~sv~~~l~~~~~~~~~~~~~~p~ 135 (355)
.+ |+.+.+|.....+.. .+ .+.++.... .+. .. ....+++++.+|+.+ ++....+..+++.
T Consensus 116 ~~~~~~~g~~~~~~~~~~~~~~--~~--~~l~~~~~~~~~~~--~~-----~~~~~~~~~~~~l~~-~~~~~~~~~~~~~ 183 (489)
T 2jae_A 116 QSDTSLSGQSVTYRAAKADTFG--YM--SELLKKATDQGALD--QV-----LSREDKDALSEFLSD-FGDLSDDGRYLGS 183 (489)
T ss_dssp CCSSTTTTCCEEHHHHHHHHHH--HH--HHHHHHHHHHTTTT--TT-----SCHHHHHHHHHHHHH-HTTCCTTSCCCCC
T ss_pred cCCcccCCccccHHHHhhhhhc--cH--HHHHHHHHhccccc--cc-----cchhhHHHHHHHHHH-hhhhhhccccccc
Confidence 55 655444321111110 00 010110000 010 00 011245689999986 5533222223333
Q ss_pred hhccccCCcccchHHhhchHHHHHHHhhCchHHHHHHhhhhhhhhhhhhhcCchhhhcCCcceeEeCcchhhHHhhcccc
Q 018468 136 VAGTSAGDPESLVMRHSFPELWNLEKRYGSVIAGAIKSKFSARKEKSAEAKGSSEKKRRQRGSFSFLGGMQVLSLSYSHD 215 (355)
Q Consensus 136 ~~~~~~~~~~~lS~~~~l~~l~~~~~~~gs~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~gG~~~l~~~l~~~ 215 (355)
....|..++.........+....+++...+.+..++.... . .....+.++++||+++|+++|+..
T Consensus 184 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----~-----------~~~~~~~~~~~gG~~~l~~~l~~~ 248 (489)
T 2jae_A 184 SRRGYDSEPGAGLNFGTEKKPFAMQEVIRSGIGRNFSFDF----G-----------YDQAMMMFTPVGGMDRIYYAFQDR 248 (489)
T ss_dssp GGGCEEECCCBTTCCCEECCCCCHHHHHHHTTTTTGGGGG----C-----------TTTSSSEEEETTCTTHHHHHHHHH
T ss_pred cchhhccCCCcccccCCCCCCcCHHHHhhhhHHHHHhhhh----c-----------cccCccEEeecCCHHHHHHHHHHh
Confidence 3333322221111000000000001000000000000000 0 011224678999999999876421
Q ss_pred --------C------cccCCCeEEEecCCCcccceeecCEEEEcCChhhhhHhhhccCCCCcccCCCCCCCCcceEEEEE
Q 018468 216 --------G------RSALENWSLCSSNQEKQSLGLSFDAVIMTAPLCNVKEMKITKGGNLFPLDFLPEVIYMPLSVIIT 281 (355)
Q Consensus 216 --------~------~~~~~~~~V~~~~g~~~~~~~~ad~VI~a~P~~~l~~l~~~~~~~~~~~~~l~~~~~~~v~~v~l 281 (355)
+ .+..++|.|++.+|. ..+++.||+||+|+|+.++.+|. .++++...+++++++|+++.||++
T Consensus 249 l~~~~i~~~~~V~~i~~~~~~v~v~~~~g~-~~~~~~ad~vI~a~p~~~l~~l~--~~l~~~~~~~l~~~~~~~~~kv~l 325 (489)
T 2jae_A 249 IGTDNIVFGAEVTSMKNVSEGVTVEYTAGG-SKKSITADYAICTIPPHLVGRLQ--NNLPGDVLTALKAAKPSSSGKLGI 325 (489)
T ss_dssp HCGGGEETTCEEEEEEEETTEEEEEEEETT-EEEEEEESEEEECSCHHHHTTSE--ECCCHHHHHHHHTEECCCEEEEEE
T ss_pred cCCCeEEECCEEEEEEEcCCeEEEEEecCC-eEEEEECCEEEECCCHHHHHhCc--cCCCHHHHHHHHhCCCccceEEEE
Confidence 1 123456778776651 12378999999999999999885 355555677889999999999999
Q ss_pred EecCCCCCCCCCceEEEecCCCCCCCCceEEEEecCCCCCCCCCCCceEEEEEecCCCCccccCCCchHHhhc
Q 018468 282 TFKKENVRRPLEGFGVLVPSKEQQNGLKTLGTLFSSMMFPDRVPKDLYLYTTFVGGSRNKELAKASTYKELQS 354 (355)
Q Consensus 282 ~~~~~~~~~~~~g~g~l~~~~~~~~~~~~~~~~~~s~~~~~~~p~~~~~l~~~~~g~~~~~~~~~sd~e~~~~ 354 (355)
.|++++|+.....+|.+... +.++..+.|+|..++ .| ...++++|++|..++.+..++++|+++.
T Consensus 326 ~~~~~~w~~~~~~~g~~~~~-----~~~~~~~~~~s~~~~--~~-~~~l~~~~~~g~~~~~~~~~~~~~~~~~ 390 (489)
T 2jae_A 326 EYSRRWWETEDRIYGGASNT-----DKDISQIMFPYDHYN--SD-RGVVVAYYSSGKRQEAFESLTHRQRLAK 390 (489)
T ss_dssp EESSCHHHHTTCCCSCEEEE-----SSTTCEEECCSSSTT--SS-CEEEEEEEEETHHHHHHHTSCHHHHHHH
T ss_pred EeCCCCccCCCCcccccccC-----CCCceEEEeCCCCCC--CC-CCEEEEEeeCCchhhhhhcCCHHHHHHH
Confidence 99998885433455444322 134567777776553 23 2355667899988888899999988763
No 15
>2bi7_A UDP-galactopyranose mutase; FAD, flavoprotein, isomerase, lipopolysaccharide biosynthesi; HET: FAD; 2.0A {Klebsiella pneumoniae} SCOP: c.4.1.3 d.16.1.7 PDB: 2bi8_A* 1wam_A* 3inr_A* 3gf4_A* 3int_A* 3kyb_A*
Probab=99.80 E-value=2.5e-18 Score=161.24 Aligned_cols=265 Identities=13% Similarity=0.070 Sum_probs=175.2
Q ss_pred CeeecCCCCCceEEEeec--CCeEE-cccCCeeecCcHHHHHHHHHcCCccccccccCCCceEEEECCEEeecCCCchhh
Q 018468 1 MVFEADERAGGKLRSISK--DGLIW-DEGANTMTESEMEVKGLLDDLGIREKQQFPISQYKRYVVRNGVPFLIPTNPIAL 77 (355)
Q Consensus 1 ~vlEA~drvGGri~T~~~--~g~~~-d~G~~~~~~~~~~~~~l~~~lGl~~~~~~~~~~~~~~i~~~g~~~~~p~~~~~~ 77 (355)
+|+|+++++||+++|.+. +|+.+ |.|+|+++..+++++++++++|+.. . .....+++.+|+.+.+|.+...+
T Consensus 30 ~v~E~~~~~GG~~~~~~~~~~g~~~~~~G~~~~~~~~~~~~~~~~~l~~~~--~---~~~~~~~~~~g~~~~~P~~~~~~ 104 (384)
T 2bi7_A 30 HIIDQRDHIGGNSYDARDSETNVMVHVYGPHIFHTDNETVWNYVNKHAEMM--P---YVNRVKATVNGQVFSLPINLHTI 104 (384)
T ss_dssp EEEESSSSSSGGGCEEECTTTCCEEETTSCCCEEESCHHHHHHHHTTSCEE--E---CCCCEEEEETTEEEEESCCHHHH
T ss_pred EEEEecCCcCCccccccccCCCceEeeCCceEECCCCHHHHHHHHHHhhhc--c---cccceEEEECCEEEECCCChhHH
Confidence 589999999999999987 78876 9999999988999999999998632 1 12345677899999998775433
Q ss_pred hhc--ccCChhHHHHHhcccccccCCCcccccCCCCCCCHHHHHHHhhcHHHHHHHhhhhhhccccCCcccchHHhh--c
Q 018468 78 LTS--NFLSAQSKFQIILEPFLWKKSDSAKVSAEDAKESVGGFFQRHFGREVVDFLIDPFVAGTSAGDPESLVMRHS--F 153 (355)
Q Consensus 78 l~~--~~ls~~~~~~~~~~~~~~~~~~~~~~~~~~~~~sv~~~l~~~~~~~~~~~~~~p~~~~~~~~~~~~lS~~~~--l 153 (355)
... ..+++.+..+++.+... . ...+++|+++|+.+++++++.++++.|++.++|+.+++++|+.++ +
T Consensus 105 ~~l~~~~~~~~~~~~~l~~~~~--~-------~~~~~~sl~e~~~~~~g~~~~~~~~~p~~~~~~~~~~~~ls~~~~~r~ 175 (384)
T 2bi7_A 105 NQFFSKTCSPDEARALIAEKGD--S-------TIADPQTFEEEALRFIGKELYEAFFKGYTIKQWGMQPSELPASILKRL 175 (384)
T ss_dssp HHHTTCCCCHHHHHHHHHHHSC--C-------SCSSCCBHHHHHHHHHCHHHHHHHTHHHHHHHHSSCGGGSBGGGCCSC
T ss_pred HHHhcccCCHHHHHHHHHHhhh--c-------cCCCCcCHHHHHHHhhcHHHHHHHHHHHHHHHhCCCHHHhCHHHHhcc
Confidence 211 11233222233433331 1 124678999999999999999999999999999999999998876 2
Q ss_pred hHHHHHHHhhCchHHHHHHhhhhhhhhhhhhhcCchhhhcCCcce-eEeCcchhhHHhhccccCcccCCCeEEEecCCCc
Q 018468 154 PELWNLEKRYGSVIAGAIKSKFSARKEKSAEAKGSSEKKRRQRGS-FSFLGGMQVLSLSYSHDGRSALENWSLCSSNQEK 232 (355)
Q Consensus 154 ~~l~~~~~~~gs~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~gG~~~l~~~l~~~~~~~~~~~~V~~~~g~~ 232 (355)
|..... ... ...... ..++||+++++++|+.. .+..|.+...-.
T Consensus 176 ~~~~~~---~~~---------------------------~~~~~~~~~p~gG~~~l~~~l~~~-----~g~~I~l~~~V~ 220 (384)
T 2bi7_A 176 PVRFNY---DDN---------------------------YFNHKFQGMPKCGYTQMIKSILNH-----ENIKVDLQREFI 220 (384)
T ss_dssp CCCSSS---CCC---------------------------SCCCSEEEEETTHHHHHHHHHHCS-----TTEEEEESCCCC
T ss_pred cccccc---ccc---------------------------cccccccEEECcCHHHHHHHHHhc-----CCCEEEECCeee
Confidence 211000 000 000112 27899999999998751 234565432100
Q ss_pred -ccceeecCEEEEcCChhhhhHhhhccCCCCcccCCCCCCCCcceEEEEEEecCCCCCCCCCceEE-EecCCCCCCCCce
Q 018468 233 -QSLGLSFDAVIMTAPLCNVKEMKITKGGNLFPLDFLPEVIYMPLSVIITTFKKENVRRPLEGFGV-LVPSKEQQNGLKT 310 (355)
Q Consensus 233 -~~~~~~ad~VI~a~P~~~l~~l~~~~~~~~~~~~~l~~~~~~~v~~v~l~~~~~~~~~~~~g~g~-l~~~~~~~~~~~~ 310 (355)
.. ...||+||+|+|++.+.++. +.+++|.++..+++.++ +.. .+.++ ..+..+ .+.
T Consensus 221 ~~i-~~~~d~VI~a~p~~~~~~~~------------lg~l~y~s~~~v~~~~d-~~~----~~~~~~n~~~~~----~~~ 278 (384)
T 2bi7_A 221 VEE-RTHYDHVFYSGPLDAFYGYQ------------YGRLGYRTLDFKKFTYQ-GDY----QGCAVMNYCSVD----VPY 278 (384)
T ss_dssp GGG-GGGSSEEEECSCHHHHTTTT------------TCCCCEEEEEEEEEEEE-SCS----SSSSEEEECSTT----SSS
T ss_pred hhh-hccCCEEEEcCCHHHHHHhh------------cCCCCcceEEEEEEEeC-CCC----CCCEEEEecCCC----CCe
Confidence 00 11399999999999987762 35689999999999998 332 22323 344322 334
Q ss_pred EEEEecCCCCCCCCCCCceEEEEEecC
Q 018468 311 LGTLFSSMMFPDRVPKDLYLYTTFVGG 337 (355)
Q Consensus 311 ~~~~~~s~~~~~~~p~~~~~l~~~~~g 337 (355)
..+++.++..|...+ ++++++.-..+
T Consensus 279 ~ri~~~~~~~~~~~~-~~~~v~~e~~~ 304 (384)
T 2bi7_A 279 TRITEHKYFSPWEQH-DGSVCYKEYSR 304 (384)
T ss_dssp SEEEEGGGGCTTSCC-SEEEEEEEEEE
T ss_pred eeEEEeeccCCCCCC-CCEEEEEEEec
Confidence 456666665565543 45566655543
No 16
>1rsg_A FMS1 protein; FAD binding motif, oxidoreductase; HET: FAD; 1.90A {Saccharomyces cerevisiae} PDB: 1z6l_A* 3bi2_A* 3bi4_A* 3bi5_A* 3bnm_B* 3bnu_B* 3cn8_B* 3cnd_B* 3cnp_B* 3cns_A* 3cnt_B* 1yy5_A* 1xpq_A*
Probab=99.79 E-value=6.3e-20 Score=178.89 Aligned_cols=242 Identities=13% Similarity=0.098 Sum_probs=136.6
Q ss_pred CeeecCCCCCceEEEeec-CCeEEcccCCeeecC-cHHHHHHHHHcCCccccc-cccCCCceEEEECCEEeecCCCchhh
Q 018468 1 MVFEADERAGGKLRSISK-DGLIWDEGANTMTES-EMEVKGLLDDLGIREKQQ-FPISQYKRYVVRNGVPFLIPTNPIAL 77 (355)
Q Consensus 1 ~vlEA~drvGGri~T~~~-~g~~~d~G~~~~~~~-~~~~~~l~~~lGl~~~~~-~~~~~~~~~i~~~g~~~~~p~~~~~~ 77 (355)
+||||++|+|||++|.+. +|+.+|+|++|+++. ++.+++++.++|+..... .....+..+.+..+.. .++......
T Consensus 36 ~VlEa~~riGGr~~t~~~~~G~~~D~G~~~~~~~~~~~~~~~~~~lg~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~ 114 (516)
T 1rsg_A 36 LVLEARDRVGGRLQTVTGYQGRKYDIGASWHHDTLTNPLFLEEAQLSLNDGRTRFVFDDDNFIYIDEERG-RVDHDKELL 114 (516)
T ss_dssp EEECSSSSSBTTCCEEECGGGCEEESSCCEECCTTTCHHHHHHHHHHHHHCCCCEECCCCCCEEEETTTE-ECTTCTTTC
T ss_pred EEEeCCCCCCCceeeeecCCCcEEecCCeEEecCCCChHHHHHHHhCCCCcceeEEECCCCEEEEcCCCc-cccccHHHH
Confidence 589999999999999986 799999999998754 456788888888743100 0001112222222110 011000000
Q ss_pred hhcccCChhHHH-HHhcccccccCCCcccccCCCCCCCHHHHHHHhhcHH------HHHHHhhhhh---hccccCCcccc
Q 018468 78 LTSNFLSAQSKF-QIILEPFLWKKSDSAKVSAEDAKESVGGFFQRHFGRE------VVDFLIDPFV---AGTSAGDPESL 147 (355)
Q Consensus 78 l~~~~ls~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~sv~~~l~~~~~~~------~~~~~~~p~~---~~~~~~~~~~l 147 (355)
+. .+ .+.+ +.....+. .. ...+++|+.+|+.+.+... ....++.+++ ...++.+++.+
T Consensus 115 ~~-~~---~~~~~~~~~~~~~-~~-------~~~~d~s~~~~l~~~l~~~~~~l~~~~~~~~~~~~~~~~~~~g~~~~~~ 182 (516)
T 1rsg_A 115 LE-IV---DNEMSKFAELEFH-QH-------LGVSDCSFFQLVMKYLLQRRQFLTNDQIRYLPQLCRYLELWHGLDWKLL 182 (516)
T ss_dssp HH-HH---HHHHHHHHHHHC---------------CCBHHHHHHHHHHHHGGGSCHHHHHHHHHHHGGGHHHHTBCTTTS
T ss_pred HH-HH---HHHHHHHHHHHhh-hc-------cCCCCCCHHHHHHHHHHHhhcccCHHHHHHHHHHHHHHHHHhCCChHHC
Confidence 00 00 0011 11111111 01 2346799999988754431 1112223322 22345566666
Q ss_pred hHHhhchHHHHHHHhhCchHHHHHHhhhhhhhhhhhhhcCchhhhcCCcceeEeCcchhhHHhhcccc--------Cc--
Q 018468 148 VMRHSFPELWNLEKRYGSVIAGAIKSKFSARKEKSAEAKGSSEKKRRQRGSFSFLGGMQVLSLSYSHD--------GR-- 217 (355)
Q Consensus 148 S~~~~l~~l~~~~~~~gs~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~gG~~~l~~~l~~~--------~~-- 217 (355)
|+.+++.. + .. ..+.++| +++|+++|+.. +.
T Consensus 183 s~~~~~~~-------~-----------------------------~~--~~~~~~g-~~~l~~~l~~~l~~~~i~~~~~V 223 (516)
T 1rsg_A 183 SAKDTYFG-------H-----------------------------QG--RNAFALN-YDSVVQRIAQSFPQNWLKLSCEV 223 (516)
T ss_dssp BHHHHCCC-------C-----------------------------SS--CCEEESC-HHHHHHHHHTTSCGGGEETTCCE
T ss_pred ChHHHHhh-------c-----------------------------cC--cchhhhC-HHHHHHHHHHhCCCCEEEECCEE
Confidence 65443210 0 00 1233566 88888776431 11
Q ss_pred ----cc-CCCeEEEecCCCcccceeecCEEEEcCChhhhhH-----------hhhccCCCCcccCCCCCCCCcceEEEEE
Q 018468 218 ----SA-LENWSLCSSNQEKQSLGLSFDAVIMTAPLCNVKE-----------MKITKGGNLFPLDFLPEVIYMPLSVIIT 281 (355)
Q Consensus 218 ----~~-~~~~~V~~~~g~~~~~~~~ad~VI~a~P~~~l~~-----------l~~~~~~~~~~~~~l~~~~~~~v~~v~l 281 (355)
.. .+++.|++.+|. +++||+||+|+|+.+++. +.+.+++++.+.++++++.|+++.||++
T Consensus 224 ~~I~~~~~~~v~v~~~~g~----~~~ad~VI~t~p~~~l~~~~~~~~~~~~~i~f~P~Lp~~~~~ai~~~~~~~~~Kv~l 299 (516)
T 1rsg_A 224 KSITREPSKNVTVNCEDGT----VYNADYVIITVPQSVLNLSVQPEKNLRGRIEFQPPLKPVIQDAFDKIHFGALGKVIF 299 (516)
T ss_dssp EEEEECTTSCEEEEETTSC----EEEEEEEEECCCHHHHHGGGSSCSCSTTCCEEESCCCHHHHHHTTSSCCCCCEEEEE
T ss_pred EEEEEcCCCeEEEEECCCc----EEECCEEEECCCHHHhhhccccccccccceEecCCCCHHHHHHHHhCCCCcceEEEE
Confidence 12 346888888875 799999999999999974 3312344444567899999999999999
Q ss_pred EecCCCCCCCCCceEEE
Q 018468 282 TFKKENVRRPLEGFGVL 298 (355)
Q Consensus 282 ~~~~~~~~~~~~g~g~l 298 (355)
.|++++|+....++..+
T Consensus 300 ~f~~~fW~~~~~~~~~~ 316 (516)
T 1rsg_A 300 EFEECCWSNESSKIVTL 316 (516)
T ss_dssp EESSCCSCCSCSEEEEC
T ss_pred EeCCCCCCCCCCcEEEe
Confidence 99999997544445443
No 17
>3hdq_A UDP-galactopyranose mutase; substrate and inhibitor, isomerase; HET: GDU FAD; 2.36A {Deinococcus radiodurans} PDB: 3hdy_A* 3he3_A* 3mj4_A*
Probab=99.79 E-value=2.2e-18 Score=161.30 Aligned_cols=278 Identities=12% Similarity=0.071 Sum_probs=180.0
Q ss_pred CeeecCCCCCceEEEee-cCCeEE-cccCCeeecCcHHHHHHHHHcCCccccccccCCCceEEEECCEEeecCCCchhhh
Q 018468 1 MVFEADERAGGKLRSIS-KDGLIW-DEGANTMTESEMEVKGLLDDLGIREKQQFPISQYKRYVVRNGVPFLIPTNPIALL 78 (355)
Q Consensus 1 ~vlEA~drvGGri~T~~-~~g~~~-d~G~~~~~~~~~~~~~l~~~lGl~~~~~~~~~~~~~~i~~~g~~~~~p~~~~~~l 78 (355)
+|+|+++++||+++|.. .+|+.+ |.|+|+++..++.++++++++|... ......+++.+|+++++|.++..+.
T Consensus 56 ~v~E~~~~~GG~~~~~~~~~G~~~~~~G~~~~~~~~~~~~~~~~~~~~~~-----~~~~~~~~~~~g~l~~lP~~~~~~~ 130 (397)
T 3hdq_A 56 LIVDRRPHIGGNAYDCYDDAGVLIHPYGPHIFHTNSKDVFEYLSRFTEWR-----PYQHRVLASVDGQLLPIPINLDTVN 130 (397)
T ss_dssp EEECSSSSSSGGGCCEECTTSCEECTTSCCCCEESCHHHHHHHHTSCCEE-----ECCCBEEEEETTEEEEESCCHHHHH
T ss_pred EEEeccCCCCCccceeeccCCceEeecCCcccCCChHHHHHHHHHhhhcc-----cccccceEEECCEEEEcCCChHHHH
Confidence 58999999999999987 678875 9999999988999999999999633 1224567889999999998754332
Q ss_pred h--cccCChhHHHHHhcccccccCCCcccccCCCCCCCHHHHHHHhhcHHHHHHHhhhhhhccccCCcccchHHhhchHH
Q 018468 79 T--SNFLSAQSKFQIILEPFLWKKSDSAKVSAEDAKESVGGFFQRHFGREVVDFLIDPFVAGTSAGDPESLVMRHSFPEL 156 (355)
Q Consensus 79 ~--~~~ls~~~~~~~~~~~~~~~~~~~~~~~~~~~~~sv~~~l~~~~~~~~~~~~~~p~~~~~~~~~~~~lS~~~~l~~l 156 (355)
. ...+++.....++.. ... ...+++|+++|+.+++|++++++++.|++.++|+.+++++|+.++- .+
T Consensus 131 ~l~~~~~~~~~~~~~l~~----~~~------~~~~~~s~~e~~~~~~G~~~~e~~~~py~~k~~~~~~~~Lsa~~~~-Rv 199 (397)
T 3hdq_A 131 RLYGLNLTSFQVEEFFAS----VAE------KVEQVRTSEDVVVSKVGRDLYNKFFRGYTRKQWGLDPSELDASVTA-RV 199 (397)
T ss_dssp HHHTCCCCHHHHHHHHHH----HCC------CCSSCCBHHHHHHHHHHHHHHHHHTHHHHHHHHSSCGGGSBTTTGG-GS
T ss_pred HhhccCCCHHHHHHHHhh----ccc------CCCCCcCHHHHHHHhcCHHHHHHHHHHHhCchhCCCHHHHHHHHHH-hc
Confidence 1 112333333333321 010 2456899999999999999999999999999999999999987552 11
Q ss_pred HHHHHhhCchHHHHHHhhhhhhhhhhhhhcCchhhhcCCcce-eEeCcchhhHHhhccccCcccCCCeEEEecCC-Cccc
Q 018468 157 WNLEKRYGSVIAGAIKSKFSARKEKSAEAKGSSEKKRRQRGS-FSFLGGMQVLSLSYSHDGRSALENWSLCSSNQ-EKQS 234 (355)
Q Consensus 157 ~~~~~~~gs~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~gG~~~l~~~l~~~~~~~~~~~~V~~~~g-~~~~ 234 (355)
.. .... + +....... ..++||+++|..+++. ..+..|.++.. ....
T Consensus 200 p~----~~~~-------------------d----~~yf~~~~qg~P~gGy~~l~e~l~~-----~~g~~V~l~~~v~~~~ 247 (397)
T 3hdq_A 200 PT----RTNR-------------------D----NRYFADTYQAMPLHGYTRMFQNMLS-----SPNIKVMLNTDYREIA 247 (397)
T ss_dssp CC----CSSC-------------------C----CBSCCCSEEEEETTCHHHHHHHHTC-----STTEEEEESCCGGGTT
T ss_pred Cc----cccc-------------------C----ccchhhhheeccCCCHHHHHHHHHh-----ccCCEEEECCeEEecc
Confidence 00 0000 0 00011111 2589999999998864 12445543211 0011
Q ss_pred ceeecCEEEEcCChhhhhHhhhccCCCCcccCCCCCCCCcceEEEEEEecCCCCCCCCCceEEEecCCCCCCCCceEEEE
Q 018468 235 LGLSFDAVIMTAPLCNVKEMKITKGGNLFPLDFLPEVIYMPLSVIITTFKKENVRRPLEGFGVLVPSKEQQNGLKTLGTL 314 (355)
Q Consensus 235 ~~~~ad~VI~a~P~~~l~~l~~~~~~~~~~~~~l~~~~~~~v~~v~l~~~~~~~~~~~~g~g~l~~~~~~~~~~~~~~~~ 314 (355)
.++.||+||+|+|++.+... .+.+|+|.++..+++.++.+.+. + .. .+-.|+. + +...++
T Consensus 248 ~~~~~d~vI~T~P~d~~~~~------------~~g~L~yrsl~~~~~~~~~~~~~-~-~~-~vn~~d~----~-p~tRi~ 307 (397)
T 3hdq_A 248 DFIPFQHMIYTGPVDAFFDF------------CYGKLPYRSLEFRHETHDTEQLL-P-TG-TVNYPND----Y-AYTRVS 307 (397)
T ss_dssp TTSCEEEEEECSCHHHHTTT------------TTCCCCEEEEEEEEEEESSSCSC-S-SS-EEECSSS----S-SCSEEE
T ss_pred ccccCCEEEEcCCHHHHHHH------------hcCCCCCceEEEEEEEeccccCC-C-Ce-EEEeCCC----C-cceEEE
Confidence 26789999999998776432 25679999999999999975442 1 12 2334543 3 566777
Q ss_pred ecCCCCCCCCCCCceEEEEEecCCCCccccCCCc
Q 018468 315 FSSMMFPDRVPKDLYLYTTFVGGSRNKELAKAST 348 (355)
Q Consensus 315 ~~s~~~~~~~p~~~~~l~~~~~g~~~~~~~~~sd 348 (355)
.-++. +.. +.++++++.-+.....+++--..+
T Consensus 308 e~k~~-~~~-~~~~t~i~~Ey~~~~~~pyYpv~~ 339 (397)
T 3hdq_A 308 EFKHI-TGQ-RHHQTSVVYEYPRAEGDPYYPVPR 339 (397)
T ss_dssp EHHHH-HCC-CCSSEEEEEEEEESSSSCCEECCS
T ss_pred eeccc-CCC-CCCCEEEEEEECCCCCccccccCc
Confidence 66663 432 334566655554333333333333
No 18
>2xag_A Lysine-specific histone demethylase 1; amine oxidase, chromatin regulator, histone inhibitor binding, methylation, nucleosome core, oxidoreductase; HET: FAD TCF; 3.10A {Homo sapiens} PDB: 2xaf_A* 2xah_A* 2xaj_A* 2xaq_A* 2xas_A* 2com_A
Probab=99.78 E-value=1.2e-19 Score=184.58 Aligned_cols=147 Identities=13% Similarity=0.122 Sum_probs=108.7
Q ss_pred ceeEeCcchhhHHhhcccc-----C------cccCCCeEEEecCC--CcccceeecCEEEEcCChhhhhHhh---hccCC
Q 018468 197 GSFSFLGGMQVLSLSYSHD-----G------RSALENWSLCSSNQ--EKQSLGLSFDAVIMTAPLCNVKEMK---ITKGG 260 (355)
Q Consensus 197 ~~~~~~gG~~~l~~~l~~~-----~------~~~~~~~~V~~~~g--~~~~~~~~ad~VI~a~P~~~l~~l~---~~~~~ 260 (355)
..++++|||++|+.+|+.. + ....++|+|++.+. .+..++++||+||||+|+.+++++. .+.|.
T Consensus 563 ~~~~~~gG~~~L~~aLa~~l~I~Lnt~V~~I~~~~~gV~V~~~~~~~~~~g~~i~AD~VIvTvPl~vLk~l~~~I~F~P~ 642 (852)
T 2xag_A 563 SHLTVRNGYSCVPVALAEGLDIKLNTAVRQVRYTASGCEVIAVNTRSTSQTFIYKCDAVLCTLPLGVLKQQPPAVQFVPP 642 (852)
T ss_dssp CCEEETTCTTHHHHHHTTTCCEECSEEEEEEEEETTEEEEEEEESSSTTCEEEEEESEEEECCCHHHHHCSSCSSEEESC
T ss_pred ceEEecCcHHHHHHHHHhCCCEEeCCeEEEEEEcCCcEEEEEeecccCCCCeEEECCEEEECCCHHHHHhhhcccccCCC
Confidence 3578999999999988642 2 12345788887551 0112479999999999999999841 13444
Q ss_pred CCc-ccCCCCCCCCcceEEEEEEecCCCCCCCCCceEEEecCCCCCCCCceEEEEecCCCCCCCCCCCceEEEEEecCCC
Q 018468 261 NLF-PLDFLPEVIYMPLSVIITTFKKENVRRPLEGFGVLVPSKEQQNGLKTLGTLFSSMMFPDRVPKDLYLYTTFVGGSR 339 (355)
Q Consensus 261 ~~~-~~~~l~~~~~~~v~~v~l~~~~~~~~~~~~g~g~l~~~~~~~~~~~~~~~~~~s~~~~~~~p~~~~~l~~~~~g~~ 339 (355)
+|. +.++++++.|++++||+|.|++++|+....+||++.+... +...++++|+++ . ..+|++|++|..
T Consensus 643 LP~~k~~AI~~l~~g~v~KV~L~F~~~fW~~~~~~fG~l~~~~~---~~~~l~~~~~~~----~----~pvLl~~v~G~~ 711 (852)
T 2xag_A 643 LPEWKTSAVQRMGFGNLNKVVLCFDRVFWDPSVNLFGHVGSTTA---SRGELFLFWNLY----K----APILLALVAGEA 711 (852)
T ss_dssp CCHHHHHHHHHSEECCCEEEEEECSSCCSCTTCCEEEECCSSST---TTTTTCEEEECS----S----SSEEEEEECHHH
T ss_pred CCHHHHHHHHcCCccceEEEEEEcCCcccCCCCCeeeeeccccC---CCCceEEEecCC----C----CCEEEEEecCcC
Confidence 443 4567899999999999999999999765678999887654 234456778764 1 237889999998
Q ss_pred CccccCCCchHHhhc
Q 018468 340 NKELAKASTYKELQS 354 (355)
Q Consensus 340 ~~~~~~~sd~e~~~~ 354 (355)
++.+..++|+|+++.
T Consensus 712 a~~l~~lsdeel~~~ 726 (852)
T 2xag_A 712 AGIMENISDDVIVGR 726 (852)
T ss_dssp HHHGGGSCHHHHHHH
T ss_pred HHHHhcCCHHHHHHH
Confidence 899999999998753
No 19
>2z3y_A Lysine-specific histone demethylase 1; chromatin, nucleosome, transcription, LSD1, alternative splicing, chromatin regulator, coiled coil; HET: F2N; 2.25A {Homo sapiens} SCOP: a.4.1.18 c.3.1.2 d.16.1.5 PDB: 2ejr_A* 2z5u_A* 3abt_A* 3abu_A* 2y48_A* 2v1d_A* 2h94_A* 2iw5_A* 2uxn_A* 2uxx_A* 2hko_A* 2dw4_A* 2x0l_A* 2l3d_A
Probab=99.78 E-value=1.4e-19 Score=181.24 Aligned_cols=146 Identities=13% Similarity=0.127 Sum_probs=110.0
Q ss_pred ceeEeCcchhhHHhhcccc-----C------cccCCCeEEEecCC--CcccceeecCEEEEcCChhhhhHh----hhccC
Q 018468 197 GSFSFLGGMQVLSLSYSHD-----G------RSALENWSLCSSNQ--EKQSLGLSFDAVIMTAPLCNVKEM----KITKG 259 (355)
Q Consensus 197 ~~~~~~gG~~~l~~~l~~~-----~------~~~~~~~~V~~~~g--~~~~~~~~ad~VI~a~P~~~l~~l----~~~~~ 259 (355)
..++++||+++|+++|+.. + ....++|+|++.++ .+..++++||+||+|+|+.+++++ . +.|
T Consensus 392 ~~~~~~gG~~~l~~~La~~l~I~l~~~V~~I~~~~~~v~V~~~~~~~~~~~~~~~Ad~VI~tvP~~vL~~l~~~i~-f~P 470 (662)
T 2z3y_A 392 SHLTVRNGYSCVPVALAEGLDIKLNTAVRQVRYTASGCEVIAVNTRSTSQTFIYKCDAVLCTLPLGVLKQQPPAVQ-FVP 470 (662)
T ss_dssp CCEEETTCTTHHHHHHTTTCEEETTEEEEEEEEETTEEEEEEEESSCTTCEEEEEESEEEECCCHHHHHCSSCSSE-EES
T ss_pred ceeeecCcHHHHHHHHHhcCceecCCeEEEEEECCCcEEEEEeecccCCCCeEEEeCEEEECCCHHHHhcccCceE-EcC
Confidence 3578999999999988642 2 12345788887651 111247999999999999999973 2 344
Q ss_pred CCCc-ccCCCCCCCCcceEEEEEEecCCCCCCCCCceEEEecCCCCCCCCceEEEEecCCCCCCCCCCCceEEEEEecCC
Q 018468 260 GNLF-PLDFLPEVIYMPLSVIITTFKKENVRRPLEGFGVLVPSKEQQNGLKTLGTLFSSMMFPDRVPKDLYLYTTFVGGS 338 (355)
Q Consensus 260 ~~~~-~~~~l~~~~~~~v~~v~l~~~~~~~~~~~~g~g~l~~~~~~~~~~~~~~~~~~s~~~~~~~p~~~~~l~~~~~g~ 338 (355)
.+|. +.++++++.|++++||++.|++++|+....+||++.+... +...+.++|+++ +..+|++|++|.
T Consensus 471 ~LP~~k~~Ai~~l~~g~~~KV~l~f~~~fW~~~~~~~G~l~~~~~---~~~~~~~~~~~~--------~~~vL~~~~~G~ 539 (662)
T 2z3y_A 471 PLPEWKTSAVQRMGFGNLNKVVLCFDRVFWDPSVNLFGHVGSTTA---SRGELFLFWNLY--------KAPILLALVAGE 539 (662)
T ss_dssp CCCHHHHHHHHHSEECCCEEEEEECSSCCSCTTCSEEEECCSSST---TTTEEEEEECCS--------SSSEEEEEECTH
T ss_pred CCCHHHHHHHHhCCccceeEEEEEcCcccccCCCCceeeecCCCC---CCCceeEEEeCC--------CCCEEEEEeccH
Confidence 4444 5578899999999999999999999765678999877654 345677788764 123788999999
Q ss_pred CCccccCCCchHHhhc
Q 018468 339 RNKELAKASTYKELQS 354 (355)
Q Consensus 339 ~~~~~~~~sd~e~~~~ 354 (355)
.++.+..++|+|+++.
T Consensus 540 ~a~~~~~lsdee~~~~ 555 (662)
T 2z3y_A 540 AAGIMENISDDVIVGR 555 (662)
T ss_dssp HHHHHTTSCHHHHHHH
T ss_pred hHHHHHhCCHHHHHHH
Confidence 9999999999998753
No 20
>1i8t_A UDP-galactopyranose mutase; rossman fold, FAD, contractase, isomerase; HET: FAD; 2.40A {Escherichia coli} SCOP: c.4.1.3 d.16.1.7
Probab=99.77 E-value=4.8e-18 Score=158.40 Aligned_cols=262 Identities=13% Similarity=0.091 Sum_probs=171.4
Q ss_pred CeeecCCCCCceEEEeecCCeEEc-ccCCeeecCcHHHHHHHHHcCCccccccccCCCceEEEECCEEeecCCCchhhhh
Q 018468 1 MVFEADERAGGKLRSISKDGLIWD-EGANTMTESEMEVKGLLDDLGIREKQQFPISQYKRYVVRNGVPFLIPTNPIALLT 79 (355)
Q Consensus 1 ~vlEA~drvGGri~T~~~~g~~~d-~G~~~~~~~~~~~~~l~~~lGl~~~~~~~~~~~~~~i~~~g~~~~~p~~~~~~l~ 79 (355)
+|+|+++++||+++|...+|+.+| .|+|++...++.++++++++|.... . ....+++.+|+.+.+|.+...+..
T Consensus 28 ~v~E~~~~~GG~~~~~~~~g~~~~~~G~~~~~~~~~~~~~~~~~l~~~~~--~---~~~~~~~~~g~~~~~p~~~~~~~~ 102 (367)
T 1i8t_A 28 LVIEKRNHIGGNAYTEDCEGIQIHKYGAHIFHTNDKYIWDYVNDLVEFNR--F---TNSPLAIYKDKLFNLPFNMNTFHQ 102 (367)
T ss_dssp EEECSSSSSSGGGCEEEETTEEEETTSCCCEEESCHHHHHHHHTTSCBCC--C---CCCCEEEETTEEEESSBSHHHHHH
T ss_pred EEEecCCCCCcceEeeccCCceeeccCCceecCCCHHHHHHHHHhhhhhh--c---cccceEEECCeEEEcCCCHHHHHH
Confidence 589999999999999998999995 9999998888899999999986331 1 223456789999999876543321
Q ss_pred c-ccCChhHHHHHhcccccccCCCcccccCCCCCCCHHHHHHHhhcHHHHHHHhhhhhhccccCCcccchHHhhc--hHH
Q 018468 80 S-NFLSAQSKFQIILEPFLWKKSDSAKVSAEDAKESVGGFFQRHFGREVVDFLIDPFVAGTSAGDPESLVMRHSF--PEL 156 (355)
Q Consensus 80 ~-~~ls~~~~~~~~~~~~~~~~~~~~~~~~~~~~~sv~~~l~~~~~~~~~~~~~~p~~~~~~~~~~~~lS~~~~l--~~l 156 (355)
. ...++.+..+++.+... .. ...+++|+++|+.+++++++.++++.|++.++|+.+++++|+.++. +..
T Consensus 103 l~~~~~~~~~~~~l~~~~~--~~------~~~~~~s~~~~~~~~~g~~~~~~~~~p~~~~~~~~~~~~lsa~~~~~l~~~ 174 (367)
T 1i8t_A 103 MWGVKDPQEAQNIINAQKK--KY------GDKVPENLEEQAISLVGEDLYQALIKGYTEKQWGRSAKELPAFIIKRIPVR 174 (367)
T ss_dssp HHCCCCHHHHHHHHHHHTT--TT------CCCCCCSHHHHHHHHHHHHHHHHHTHHHHHHHHSSCGGGSCTTSSCCCCBC
T ss_pred HhccCCHHHHHHHHHHHhh--cc------CCCCCccHHHHHHHHHhHHHHHHHHHHHHhhhhCCChHHcCHHHHhhceee
Confidence 1 11122222233333221 10 1246789999999999999999999999999999999999987652 110
Q ss_pred HHHHHhhCchHHHHHHhhhhhhhhhhhhhcCchhhhcCCccee--EeCcchhhHHhhccccCcccCCCeEEEecCC-Cc-
Q 018468 157 WNLEKRYGSVIAGAIKSKFSARKEKSAEAKGSSEKKRRQRGSF--SFLGGMQVLSLSYSHDGRSALENWSLCSSNQ-EK- 232 (355)
Q Consensus 157 ~~~~~~~gs~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~gG~~~l~~~l~~~~~~~~~~~~V~~~~g-~~- 232 (355)
. .. . +.... ..+ .++||+++|.++|+. +..|.++.. ..
T Consensus 175 ~-------~~-------------~----------~~~~~-~~~~~~p~gG~~~l~~~l~~-------g~~i~l~~~V~~i 216 (367)
T 1i8t_A 175 F-------TF-------------D----------NNYFS-DRYQGIPVGGYTKLIEKMLE-------GVDVKLGIDFLKD 216 (367)
T ss_dssp S-------SS-------------C----------CCSCC-CSEEECBTTCHHHHHHHHHT-------TSEEECSCCGGGS
T ss_pred e-------cc-------------c----------ccccc-chhhcccCCCHHHHHHHHhc-------CCEEEeCCceeee
Confidence 0 00 0 00001 123 789999999999875 133443211 00
Q ss_pred ccc-eeecCEEEEcCChhhhhHhhhccCCCCcccCCCCCCCCcceEEEEEEecCCCCCCCCCceEEEecCCCCCCCCceE
Q 018468 233 QSL-GLSFDAVIMTAPLCNVKEMKITKGGNLFPLDFLPEVIYMPLSVIITTFKKENVRRPLEGFGVLVPSKEQQNGLKTL 311 (355)
Q Consensus 233 ~~~-~~~ad~VI~a~P~~~l~~l~~~~~~~~~~~~~l~~~~~~~v~~v~l~~~~~~~~~~~~g~g~l~~~~~~~~~~~~~ 311 (355)
... ...||+||+|+|++.+.++ .+.+++|.++..|++.++++.++ ..+ ++.+++. +.+..
T Consensus 217 ~~~v~~~~D~VV~a~p~~~~~~~------------~l~~l~y~s~~~v~~~~d~~~~~--~~~-~~~~~~~----~~~~~ 277 (367)
T 1i8t_A 217 KDSLASKAHRIIYTGPIDQYFDY------------RFGALEYRSLKFETERHEFPNFQ--GNA-VINFTDA----NVPYT 277 (367)
T ss_dssp HHHHHTTEEEEEECSCHHHHTTT------------TTCCCCEEEEEEEEEEESSSCSS--SSS-EEEECCT----TSSCS
T ss_pred chhhhccCCEEEEeccHHHHHHH------------hhCCCCCceEEEEEEEeccccCC--CCe-EEEeCCC----CCcee
Confidence 000 1369999999999886554 24568999999999999976442 122 2334432 23456
Q ss_pred EEEecCCCCCCCCCCCceEEEEE
Q 018468 312 GTLFSSMMFPDRVPKDLYLYTTF 334 (355)
Q Consensus 312 ~~~~~s~~~~~~~p~~~~~l~~~ 334 (355)
.+++.++..|... ++++++.-
T Consensus 278 ri~~~~~~~~~~~--~~~~v~~e 298 (367)
T 1i8t_A 278 RIIEHKHFDYVET--KHTVVTKE 298 (367)
T ss_dssp EEEEGGGGSCCCC--SCEEEEEE
T ss_pred eEEeecccCCCCC--CCEEEEEE
Confidence 7777777555432 34555443
No 21
>2b9w_A Putative aminooxidase; isomerase, conjugated linoleic acid, FAD; HET: FAD 12P; 1.95A {Propionibacterium acnes} PDB: 2b9x_A* 2b9y_A* 2ba9_A* 2bab_A* 2bac_A*
Probab=99.75 E-value=1.9e-18 Score=164.23 Aligned_cols=296 Identities=15% Similarity=0.210 Sum_probs=172.9
Q ss_pred CeeecCCCCCceEEEeecCCeEEcccCCeeecCcHHHHHHHHHcCCccccccccCCCceEEEECCEEeecCC-Cchhhhh
Q 018468 1 MVFEADERAGGKLRSISKDGLIWDEGANTMTESEMEVKGLLDDLGIREKQQFPISQYKRYVVRNGVPFLIPT-NPIALLT 79 (355)
Q Consensus 1 ~vlEA~drvGGri~T~~~~g~~~d~G~~~~~~~~~~~~~l~~~lGl~~~~~~~~~~~~~~i~~~g~~~~~p~-~~~~~l~ 79 (355)
+|||+++|+|||++|.+.+|+.+|.|++++...++.+.++++++|+.... ......+++.+|+.+ .|. ++....
T Consensus 34 ~v~E~~~~~GG~~~t~~~~G~~~d~G~~~~~~~~~~~~~l~~~~g~~~~~---~~~~~~~~~~~g~~~-~~~~~~~~~~- 108 (424)
T 2b9w_A 34 TILERTDHVGGKCHSPNYHGRRYEMGAIMGVPSYDTIQEIMDRTGDKVDG---PKLRREFLHEDGEIY-VPEKDPVRGP- 108 (424)
T ss_dssp EEECSSSCSSTTCCCCEETTEECCSSCCCBCTTCHHHHHHHHHHCCCCCS---CCCCEEEECTTSCEE-CGGGCTTHHH-
T ss_pred EEEECCCCCCCcccccCCCCcccccCceeecCCcHHHHHHHHHhCCcccc---ccccceeEcCCCCEe-ccccCcccch-
Confidence 58999999999999999999999999998877789999999999987532 122234444566543 221 111000
Q ss_pred cccCChhHHHH-Hhccccc-ccCCCcccccCCCCCCCHHHHHHHhhcHHHHHHHhhhhhhccccCCcccchHHhhchHHH
Q 018468 80 SNFLSAQSKFQ-IILEPFL-WKKSDSAKVSAEDAKESVGGFFQRHFGREVVDFLIDPFVAGTSAGDPESLVMRHSFPELW 157 (355)
Q Consensus 80 ~~~ls~~~~~~-~~~~~~~-~~~~~~~~~~~~~~~~sv~~~l~~~~~~~~~~~~~~p~~~~~~~~~~~~lS~~~~l~~l~ 157 (355)
.+.....++. +....+. .............+++|+.+|+.++..+.+.+.++.|++.+.|+ ++.++|+.+++..+
T Consensus 109 -~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~l~~~~~~~~~~~~~~~~~~~~~~-~~~~~~a~~~~~~~- 185 (424)
T 2b9w_A 109 -QVMAAVQKLGQLLATKYQGYDANGHYNKVHEDLMLPFDEFLALNGCEAARDLWINPFTAFGYG-HFDNVPAAYVLKYL- 185 (424)
T ss_dssp -HHHHHHHHHHHHHHTTTTTTTSSSSSSCCCGGGGSBHHHHHHHTTCGGGHHHHTTTTCCCCCC-CTTTSBHHHHHHHS-
T ss_pred -hHHHHHHHHHHHHhhhhhhcccccchhhhhhhhccCHHHHHHhhCcHHHHHHHHHHHHhhccC-ChHhcCHHHHHHhh-
Confidence 0000001111 1111110 00000000001234789999999877667788888999998886 67788877653221
Q ss_pred HHHHhhCchHHHHHHhhhhhhhhhhhhhcCchhhhcCCcceeEeCcchhhHHhhcccc-------C------cccCCCeE
Q 018468 158 NLEKRYGSVIAGAIKSKFSARKEKSAEAKGSSEKKRRQRGSFSFLGGMQVLSLSYSHD-------G------RSALENWS 224 (355)
Q Consensus 158 ~~~~~~gs~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~gG~~~l~~~l~~~-------~------~~~~~~~~ 224 (355)
+. .+.+... .. ..+++.||+++++++++.. + ....+++.
T Consensus 186 -------~~-~~~~~~~------------------~~--~~~~~~~g~~~l~~~l~~~l~~~v~~~~~V~~i~~~~~~v~ 237 (424)
T 2b9w_A 186 -------DF-VTMMSFA------------------KG--DLWTWADGTQAMFEHLNATLEHPAERNVDITRITREDGKVH 237 (424)
T ss_dssp -------CH-HHHHHHH------------------HT--CCBCCTTCHHHHHHHHHHHSSSCCBCSCCEEEEECCTTCEE
T ss_pred -------hH-hhhhccc------------------CC--ceEEeCChHHHHHHHHHHhhcceEEcCCEEEEEEEECCEEE
Confidence 21 1111100 01 2457899999999876431 1 12345678
Q ss_pred EEecCCCcccceeecCEEEEcCChhhhhHhhhccCCCCcccCCCCCCCCcceEEEEEEecCCCCCCCCCceEEEecCCCC
Q 018468 225 LCSSNQEKQSLGLSFDAVIMTAPLCNVKEMKITKGGNLFPLDFLPEVIYMPLSVIITTFKKENVRRPLEGFGVLVPSKEQ 304 (355)
Q Consensus 225 V~~~~g~~~~~~~~ad~VI~a~P~~~l~~l~~~~~~~~~~~~~l~~~~~~~v~~v~l~~~~~~~~~~~~g~g~l~~~~~~ 304 (355)
|++.+| ++.||+||+|+|+..+.++ +++ .|+.++.++++.+.+.. +.+.+...+ +.++.++|+...
T Consensus 238 v~~~~g-----~~~ad~Vv~a~~~~~~~~~--l~~-~~~~~~~~~~~~~~~~~-~~~~~~~~~-----~~~~~~~~~~~~ 303 (424)
T 2b9w_A 238 IHTTDW-----DRESDVLVLTVPLEKFLDY--SDA-DDDEREYFSKIIHQQYM-VDACLVKEY-----PTISGYVPDNMR 303 (424)
T ss_dssp EEESSC-----EEEESEEEECSCHHHHTTS--BCC-CHHHHHHHTTCEEEEEE-EEEEEESSC-----CSSEEECGGGGS
T ss_pred EEECCC-----eEEcCEEEECCCHHHHhhc--cCC-CHHHHHHHhcCCcceeE-EEEEEeccC-----CcccccccCCCC
Confidence 877665 6899999999999988776 332 34444556777777644 233333322 123345665421
Q ss_pred CCCCceEE-EEecCCCCCCCCCCCceEEEEEecCCCCccccCCCchHHhh
Q 018468 305 QNGLKTLG-TLFSSMMFPDRVPKDLYLYTTFVGGSRNKELAKASTYKELQ 353 (355)
Q Consensus 305 ~~~~~~~~-~~~~s~~~~~~~p~~~~~l~~~~~g~~~~~~~~~sd~e~~~ 353 (355)
....+ .+|+...++. +...++++|+++.. +.+.+++++++++
T Consensus 304 ---~~~~g~~~~~~~~~~~---~~~~~l~~~~~~~~-~~~~~~~~~~~~~ 346 (424)
T 2b9w_A 304 ---PERLGHVMVYYHRWAD---DPHQIITTYLLRNH-PDYADKTQEECRQ 346 (424)
T ss_dssp ---GGGTTSCCEEEECCTT---CTTSCEEEEEECCB-TTBCCCCHHHHHH
T ss_pred ---CcCCCcceEEeeecCC---CCceEEEEEeccCC-CcccccChHHHHH
Confidence 11111 2344343432 12357788888643 5677888888654
No 22
>1b37_A Protein (polyamine oxidase); flavin-dependent amine oxidase, oxidoreductase; HET: NAG FCA MAN FAD; 1.90A {Zea mays} SCOP: c.3.1.2 d.16.1.5 PDB: 1b5q_A* 1h81_A* 1h82_A* 1h83_A* 1h84_A* 1h86_A* 3kpf_A* 3ku9_A* 3l1r_A*
Probab=99.75 E-value=1.1e-18 Score=168.19 Aligned_cols=298 Identities=12% Similarity=0.096 Sum_probs=173.4
Q ss_pred CeeecCCCCCceEEEeecCCeEEcccCCeeec----CcHHHHHHHHH-cCCccccccccCCCceEEEE-CCEEeecCCCc
Q 018468 1 MVFEADERAGGKLRSISKDGLIWDEGANTMTE----SEMEVKGLLDD-LGIREKQQFPISQYKRYVVR-NGVPFLIPTNP 74 (355)
Q Consensus 1 ~vlEA~drvGGri~T~~~~g~~~d~G~~~~~~----~~~~~~~l~~~-lGl~~~~~~~~~~~~~~i~~-~g~~~~~p~~~ 74 (355)
+|||+++++||+++|.+.+|+.+|.|++++.+ ..+.+++++++ ||+....... .....+++. +|+.++.+. .
T Consensus 32 ~~~e~~~~~gg~~~~~~~~~~~~d~g~~~~~~~~~~~~~~~~~~~~~~lgl~~~~~~~-~~~~~~~~~~~g~~~~~~~-~ 109 (472)
T 1b37_A 32 LILEATDHIGGRMHKTNFAGINVELGANWVEGVNGGKMNPIWPIVNSTLKLRNFRSDF-DYLAQNVYKEDGGVYDEDY-V 109 (472)
T ss_dssp EEECSSSSSBTTSCEEEETTEEEESSCCEEEEESSSSCCTHHHHHHTTSCCCEEECCC-TTGGGCEECSSSSBCCHHH-H
T ss_pred EEEeCCCCCCCceeecccCCcEEeeCCeEEeccCCCCCCHHHHHHHhhcCCceeeccC-ccccceeEcCCCCCCCHHH-H
Confidence 48999999999999999999999999999873 34568999999 9998643211 111233443 565433211 0
Q ss_pred hhhhhcccCChhHHH-HHhcccccccCCCcccccCCCCCCCHHH--HHHHhhc---HHHHHHHhhhhhh-ccccCCcccc
Q 018468 75 IALLTSNFLSAQSKF-QIILEPFLWKKSDSAKVSAEDAKESVGG--FFQRHFG---REVVDFLIDPFVA-GTSAGDPESL 147 (355)
Q Consensus 75 ~~~l~~~~ls~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~sv~~--~l~~~~~---~~~~~~~~~p~~~-~~~~~~~~~l 147 (355)
...+. ....+ +........... ...++.|+.+ |+.+... ....+.++++++. ..++.+++.+
T Consensus 110 ~~~~~-----~~~~~~~~~~~~~~~~~~------~~~~~~s~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 178 (472)
T 1b37_A 110 QKRIE-----LADSVEEMGEKLSATLHA------SGRDDMSILAMQRLNEHQPNGPATPVDMVVDYYKFDYEFAEPPRVT 178 (472)
T ss_dssp HHHHH-----HHHHHHHHHHHHHHTSCT------TCTTCCBHHHHHHHHHTSSSSCCSHHHHHHHHHHTHHHHSSCGGGB
T ss_pred HHHHH-----HHHHHHHHHHHHHHhhcc------ccchhhhHHHHHHHhhhcccccccHHHHHHHHHHHhhhhccccccc
Confidence 11110 00001 111100000010 2346778765 5554331 1224556677663 3467778777
Q ss_pred hHHhhchHHHHHHHhhCchHHHHHHhhhhhhhhhhhhhcCchhhhcCCcceeEeCcchhhHHhhcccc------------
Q 018468 148 VMRHSFPELWNLEKRYGSVIAGAIKSKFSARKEKSAEAKGSSEKKRRQRGSFSFLGGMQVLSLSYSHD------------ 215 (355)
Q Consensus 148 S~~~~l~~l~~~~~~~gs~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~gG~~~l~~~l~~~------------ 215 (355)
|+..+++.. .+... ........++||+++|.++++..
T Consensus 179 s~~~~~~~~------------~~~~~-------------------~~~~~~~~~~gG~~~l~~~l~~~l~~~~~~~~~i~ 227 (472)
T 1b37_A 179 SLQNTVPLA------------TFSDF-------------------GDDVYFVADQRGYEAVVYYLAGQYLKTDDKSGKIV 227 (472)
T ss_dssp BSTTTSSCH------------HHHHH-------------------CSEEEEECCTTCTTHHHHHHHHTTSCBCTTTCCBC
T ss_pred chhhccccc------------ccccc-------------------CCceeeeecCCcHHHHHHHHHHhcccccccccccc
Confidence 765544311 00000 01101223579999988765311
Q ss_pred ------C------cccCCCeEEEecCCCcccceeecCEEEEcCChhhhhHhh-hccCCCC-cccCCCCCCCCcceEEEEE
Q 018468 216 ------G------RSALENWSLCSSNQEKQSLGLSFDAVIMTAPLCNVKEMK-ITKGGNL-FPLDFLPEVIYMPLSVIIT 281 (355)
Q Consensus 216 ------~------~~~~~~~~V~~~~g~~~~~~~~ad~VI~a~P~~~l~~l~-~~~~~~~-~~~~~l~~~~~~~v~~v~l 281 (355)
+ ....++++|++.+|. +++||+||+|+|+.++.+++ .+.|.+| ...++++++.|+++.||++
T Consensus 228 ~~~i~~~~~V~~i~~~~~~v~v~~~~g~----~~~ad~vI~a~~~~~l~~~~~~~~p~Lp~~~~~ai~~~~~~~~~kv~l 303 (472)
T 1b37_A 228 DPRLQLNKVVREIKYSPGGVTVKTEDNS----VYSADYVMVSASLGVLQSDLIQFKPKLPTWKVRAIYQFDMAVYTKIFL 303 (472)
T ss_dssp CTTEESSCCEEEEEECSSCEEEEETTSC----EEEESEEEECSCHHHHHTTSSEEESCCCHHHHHHHHHSEEECEEEEEE
T ss_pred ccEEEcCCEEEEEEEcCCcEEEEECCCC----EEEcCEEEEecCHHHhccCCeeECCCCCHHHHHHHHhcCCcceeEEEE
Confidence 1 012456788887775 89999999999999999864 1233333 3456788899999999999
Q ss_pred EecCCCCCCCCCceEEEecCCCCCCCCceEEEEecCCCCCCCCCCCceEEEEEecCCCCccccCCCchHHhhc
Q 018468 282 TFKKENVRRPLEGFGVLVPSKEQQNGLKTLGTLFSSMMFPDRVPKDLYLYTTFVGGSRNKELAKASTYKELQS 354 (355)
Q Consensus 282 ~~~~~~~~~~~~g~g~l~~~~~~~~~~~~~~~~~~s~~~~~~~p~~~~~l~~~~~g~~~~~~~~~sd~e~~~~ 354 (355)
.|++++|+.. .+.++++....+ .... .+|.+ ++...| +.++|.+++.+..++.+..++++|+++.
T Consensus 304 ~~~~~~w~~~-~~~~~~~~~~~~---~~~~-~~~~~--~~~~~p-~~~~l~~~~~~~~a~~~~~~~~~e~~~~ 368 (472)
T 1b37_A 304 KFPRKFWPEG-KGREFFLYASSR---RGYY-GVWQE--FEKQYP-DANVLLVTVTDEESRRIEQQSDEQTKAE 368 (472)
T ss_dssp ECSSCCSCCS-TTCSEEEECCSS---TTSS-CEEEE--CTTTST-TCCEEEEEEEHHHHHHHHTSCHHHHHHH
T ss_pred ECCCcCCCCC-CCcceEEecccC---Cccc-eeeec--ccCCCC-CCCEEEEEechHHHHHHHhCCHHHHHHH
Confidence 9999999642 345555533321 1111 13322 111234 3457777887765567788899888764
No 23
>2iid_A L-amino-acid oxidase; flavoenzyme, FAD binding domain, reaction mechanism, sustrat binding, oxidoreductase; HET: NAG FUC PHE FAD; 1.80A {Calloselasma rhodostoma} SCOP: c.3.1.2 d.16.1.5 PDB: 1f8s_A* 1f8r_A* 1reo_A* 1tdk_A* 1tdn_A* 1tdo_A* 3kve_A* 4e0v_A*
Probab=99.75 E-value=3.2e-18 Score=166.03 Aligned_cols=304 Identities=14% Similarity=0.109 Sum_probs=172.5
Q ss_pred CeeecCCCCCceEEEee--cCCeEEcccCCeeecCcHHHHHHHHHcCCccccccccCCCceEEEECCEEeecCC---Cch
Q 018468 1 MVFEADERAGGKLRSIS--KDGLIWDEGANTMTESEMEVKGLLDDLGIREKQQFPISQYKRYVVRNGVPFLIPT---NPI 75 (355)
Q Consensus 1 ~vlEA~drvGGri~T~~--~~g~~~d~G~~~~~~~~~~~~~l~~~lGl~~~~~~~~~~~~~~i~~~g~~~~~p~---~~~ 75 (355)
+|||+++|+|||++|.+ ..|+.+|.|++++...++.+.++++++|+...... ......+++.+|.....+. ..
T Consensus 60 ~vlE~~~~~gg~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~g~~~~~~~-~~~~~~~~~~~g~~~~~~~~~~~~- 137 (498)
T 2iid_A 60 TVLEASERPGGRVRTYRNEEAGWYANLGPMRLPEKHRIVREYIRKFDLRLNEFS-QENDNAWYFIKNIRKKVGEVKKDP- 137 (498)
T ss_dssp EEECSSSSSBTTCCEEEETTTTEEEESSCCCEETTCHHHHHHHHHTTCCEEEEC-SCCTTSEEEETTEEEEHHHHHHCG-
T ss_pred EEEECCCCCCCceeeeccCCCCchhhcCcccccchHHHHHHHHHHhCCCceeec-ccCCccEEEeCCeeecccccccCc-
Confidence 58999999999999998 56899999999988778899999999999753221 2223456667776443210 00
Q ss_pred hhhhccc------CChhHHHHHh-cccccc-cCCCcccccCCCCCCCHHHHHHHhh--cHHHHHHHhhhhhhccccCCcc
Q 018468 76 ALLTSNF------LSAQSKFQII-LEPFLW-KKSDSAKVSAEDAKESVGGFFQRHF--GREVVDFLIDPFVAGTSAGDPE 145 (355)
Q Consensus 76 ~~l~~~~------ls~~~~~~~~-~~~~~~-~~~~~~~~~~~~~~~sv~~~l~~~~--~~~~~~~~~~p~~~~~~~~~~~ 145 (355)
..+...+ ....+.+... ...... ............++.|+.+|+.+.. +....+. +..++...
T Consensus 138 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~l~~~~~~~~~~~~~-~~~~~~~~------ 210 (498)
T 2iid_A 138 GLLKYPVKPSEAGKSAGQLYEESLGKVVEELKRTNCSYILNKYDTYSTKEYLIKEGDLSPGAVDM-IGDLLNED------ 210 (498)
T ss_dssp GGGCCCCCGGGTTCCHHHHHHHHTHHHHHHHHHSCHHHHHHHHTTSBHHHHHHHTSCCCHHHHHH-HHHHTTCG------
T ss_pred cccccCCCccccCCCHHHHHHHHHHHHHHHHhhccHHHHHHHhhhhhHHHHHHHccCCCHHHHHH-HHHhcCcc------
Confidence 0111000 0111111100 000000 0000000001235688999998742 3444332 22221110
Q ss_pred cchHHhhchHHHHHHHhhCchHHHHHHhhhhhhhhhhhhhcCchhhhcCCcceeEeCcchhhHHhhcccc-------C--
Q 018468 146 SLVMRHSFPELWNLEKRYGSVIAGAIKSKFSARKEKSAEAKGSSEKKRRQRGSFSFLGGMQVLSLSYSHD-------G-- 216 (355)
Q Consensus 146 ~lS~~~~l~~l~~~~~~~gs~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~gG~~~l~~~l~~~-------~-- 216 (355)
+. ... ++..+..... . + ....+.+.++||+++|+++|+.. +
T Consensus 211 --~~-~~~-----------~~~~~~~~~~-----~-------~----~~~~~~~~~~gG~~~l~~~l~~~l~~~i~~~~~ 260 (498)
T 2iid_A 211 --SG-YYV-----------SFIESLKHDD-----I-------F----AYEKRFDEIVDGMDKLPTAMYRDIQDKVHFNAQ 260 (498)
T ss_dssp --GG-TTS-----------BHHHHHHHHH-----H-------H----TTCCCEEEETTCTTHHHHHHHHHTGGGEESSCE
T ss_pred --cc-hhH-----------HHHHHHHHHh-----c-------c----ccCcceEEeCCcHHHHHHHHHHhcccccccCCE
Confidence 00 000 0000000000 0 0 01123568999999998876431 1
Q ss_pred ----cccCCCeEEEecCCCcccceeecCEEEEcCChhhhhHhhhccC-CCCcccCCCCCCCCcceEEEEEEecCCCCCCC
Q 018468 217 ----RSALENWSLCSSNQEKQSLGLSFDAVIMTAPLCNVKEMKITKG-GNLFPLDFLPEVIYMPLSVIITTFKKENVRRP 291 (355)
Q Consensus 217 ----~~~~~~~~V~~~~g~~~~~~~~ad~VI~a~P~~~l~~l~~~~~-~~~~~~~~l~~~~~~~v~~v~l~~~~~~~~~~ 291 (355)
....++|.|++.+|.....+++||+||+|+|+..+.+|. +.| +++.+.++++++.|+++.||++.|++++|+..
T Consensus 261 V~~I~~~~~~v~v~~~~~~~~~~~~~ad~vI~t~p~~~~~~i~-f~p~Lp~~~~~ai~~l~~~~~~kv~l~~~~~~w~~~ 339 (498)
T 2iid_A 261 VIKIQQNDQKVTVVYETLSKETPSVTADYVIVCTTSRAVRLIK-FNPPLLPKKAHALRSVHYRSGTKIFLTCTTKFWEDD 339 (498)
T ss_dssp EEEEEECSSCEEEEEECSSSCCCEEEESEEEECSCHHHHTTSE-EESCCCHHHHHHHHHCCEECEEEEEEEESSCGGGGG
T ss_pred EEEEEECCCeEEEEEecCCcccceEEeCEEEECCChHHHhhee-cCCCCCHHHHHHHHhCCCcceeEEEEEeCCCCccCC
Confidence 123456888877764111247999999999999998875 444 44445678899999999999999999998531
Q ss_pred CCceEEEecCCCCCCCCceEEEEecCCCCCCCCCCCceEEEEEecCCCCccccCCCchHHhhc
Q 018468 292 LEGFGVLVPSKEQQNGLKTLGTLFSSMMFPDRVPKDLYLYTTFVGGSRNKELAKASTYKELQS 354 (355)
Q Consensus 292 ~~g~g~l~~~~~~~~~~~~~~~~~~s~~~~~~~p~~~~~l~~~~~g~~~~~~~~~sd~e~~~~ 354 (355)
.-++...... .+...+.|.+..+ |++..+|.+|+.|..++.+..++|+|+++.
T Consensus 340 -~~~~~~~~~~-----~~~~~~~~~s~~~----p~g~~~L~~~~~g~~a~~~~~~~~~~~~~~ 392 (498)
T 2iid_A 340 -GIHGGKSTTD-----LPSRFIYYPNHNF----TNGVGVIIAYGIGDDANFFQALDFKDCADI 392 (498)
T ss_dssp -TCCSSEEEES-----STTCEEECCSSCC----TTSCEEEEEEEEHHHHHTTTTSCHHHHHHH
T ss_pred -CccCCcccCC-----CCcceEEECCCCC----CCCCcEEEEEeCCccHhhhhcCCHHHHHHH
Confidence 1111111111 1233456665333 445678888998887788889999987653
No 24
>4gut_A Lysine-specific histone demethylase 1B; histone demethylase; HET: FAD PGE; 2.00A {Homo sapiens} PDB: 4gur_A* 4gus_A* 4guu_A* 4fwe_A* 4fwf_A* 4fwj_A* 4gu1_A*
Probab=99.67 E-value=1.4e-16 Score=161.04 Aligned_cols=306 Identities=16% Similarity=0.125 Sum_probs=171.1
Q ss_pred CeeecCCCCCceEEEeec-CCeEEcccCCeeecC-cHHHHHHHHHcCCccccccccCCCceEEEECCEEeecCCCchhhh
Q 018468 1 MVFEADERAGGKLRSISK-DGLIWDEGANTMTES-EMEVKGLLDDLGIREKQQFPISQYKRYVVRNGVPFLIPTNPIALL 78 (355)
Q Consensus 1 ~vlEA~drvGGri~T~~~-~g~~~d~G~~~~~~~-~~~~~~l~~~lGl~~~~~~~~~~~~~~i~~~g~~~~~p~~~~~~l 78 (355)
+|||+++++|||++|.+. +|+.+|+|++++++. ...+..+++++|+...... ....++..+|.... + ......
T Consensus 363 ~v~E~~~~~ggri~T~~~~~G~~vd~Ga~~i~G~~~np~~~l~~~lGl~~~~~~---~~~~l~~~~g~~~~-~-~~~~~~ 437 (776)
T 4gut_A 363 TVLEAKDRIGGRVWDDKSFKGVTVGRGAQIVNGCINNPVALMCEQLGISMHKFG---ERCDLIQEGGRITD-P-TIDKRM 437 (776)
T ss_dssp EEECSSSSSCTTCCEECCSTTCCEESSCCEEECCTTCHHHHHHHHHTCCCEECC---SCCCEECTTSCBCC-H-HHHHHH
T ss_pred EEEecccceeceeeeccccCCeEeccCCeEEeCCccChHHHHHHHhCCcccccc---cccceEccCCcccc-h-hHHHHH
Confidence 589999999999999864 689999999988753 4567889999999764221 12233333333211 0 000000
Q ss_pred hcccCChhHHHHHhcccccccCCCcccccCCCCCCCHHHHHHHhhcHHHHHHHhhhhhhccccCCcccchHHhhchHHHH
Q 018468 79 TSNFLSAQSKFQIILEPFLWKKSDSAKVSAEDAKESVGGFFQRHFGREVVDFLIDPFVAGTSAGDPESLVMRHSFPELWN 158 (355)
Q Consensus 79 ~~~~ls~~~~~~~~~~~~~~~~~~~~~~~~~~~~~sv~~~l~~~~~~~~~~~~~~p~~~~~~~~~~~~lS~~~~l~~l~~ 158 (355)
.. .+...+........ .. ....+.++.+++.+.+...+. . .++ +...+........+..
T Consensus 438 ~~---~~~~ll~~~~~~~~-~~-------~~~~d~sl~~~~~~~~~~~l~-----~--~gv---~~~~l~~~~l~~~~~~ 496 (776)
T 4gut_A 438 DF---HFNALLDVVSEWRK-DK-------TQLQDVPLGEKIEEIYKAFIK-----E--SGI---QFSELEGQVLQFHLSN 496 (776)
T ss_dssp HH---HHHHHHHHHHHHGG-GC-------CGGGCCBHHHHHHHHHHHHHH-----H--SCC---CCCHHHHHHHHHHHHH
T ss_pred HH---HHHHHHHHHHHHhh-cc-------cccccccHHHHHHHHHHHHHH-----h--cCC---CccchhHHHHHHHHHH
Confidence 00 00111111111111 01 123467888877654322111 1 011 1111111100000001
Q ss_pred HHHhhCchHHHHHHhhhhhhhhhhhhhcCchhhhcCCcceeEeCcchhhHHhhcccc-----C------cccCCCeEEEe
Q 018468 159 LEKRYGSVIAGAIKSKFSARKEKSAEAKGSSEKKRRQRGSFSFLGGMQVLSLSYSHD-----G------RSALENWSLCS 227 (355)
Q Consensus 159 ~~~~~gs~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~gG~~~l~~~l~~~-----~------~~~~~~~~V~~ 227 (355)
.+...|+.+... +.. .+ ...... .........+.+|++.+..+++.. + ...+++|+|++
T Consensus 497 l~~~~G~~l~~l-----s~~-~~--~~~~~~--~~~~G~~~~~~~G~~~l~~aLa~gl~I~l~t~V~~I~~~~~~v~V~~ 566 (776)
T 4gut_A 497 LEYACGSNLHQV-----SAR-SW--DHNEFF--AQFAGDHTLLTPGYSVIIEKLAEGLDIQLKSPVQCIDYSGDEVQVTT 566 (776)
T ss_dssp HHHHHTSCTTSB-----BTT-TT--TGGGGS--CCCCSCEEECTTCTHHHHHHHHTTSCEESSCCEEEEECSSSSEEEEE
T ss_pred HHHhcCCChHHc-----Chh-hh--hhhhhH--HhcCCCeEEECChHHHHHHHHHhCCcEEcCCeeEEEEEcCCEEEEEE
Confidence 111111100000 000 00 000000 001112456889999999877532 1 12456789988
Q ss_pred cCCCcccceeecCEEEEcCChhhhhHhh-hccC-CCCcccCCCCCCCCcceEEEEEEecCCCCCC---CCCceEEEecCC
Q 018468 228 SNQEKQSLGLSFDAVIMTAPLCNVKEMK-ITKG-GNLFPLDFLPEVIYMPLSVIITTFKKENVRR---PLEGFGVLVPSK 302 (355)
Q Consensus 228 ~~g~~~~~~~~ad~VI~a~P~~~l~~l~-~~~~-~~~~~~~~l~~~~~~~v~~v~l~~~~~~~~~---~~~g~g~l~~~~ 302 (355)
.+|. ++.||+||+|+|+.++++.. .+.| +++...++++++.|+++.||++.|+++||+. ....+|++.+..
T Consensus 567 ~~G~----~i~Ad~VIvA~P~~vL~~~~i~f~P~Lp~~~~~ai~~l~~g~~~KV~l~f~~~FW~~~~~g~~~fG~l~~~~ 642 (776)
T 4gut_A 567 TDGT----GYSAQKVLVTVPLALLQKGAIQFNPPLSEKKMKAINSLGAGIIEKIALQFPYRFWDSKVQGADFFGHVPPSA 642 (776)
T ss_dssp TTCC----EEEESEEEECCCHHHHHTTCSEEESCCCHHHHHHHHHEEEECCEEEEEECSSCTTHHHHTTCSEEEECCSSG
T ss_pred CCCc----EEEcCEEEECCCHHHHhhcccccCCCCCHHHHHHHHhCCCeeEEEEEEecCcccccccCCCCceEEeecCCc
Confidence 8875 89999999999999998621 1333 4344567888899999999999999999953 235677776654
Q ss_pred CCCCCCceEEEEecCCCCCCCCCCCceEEEEEecCCCCccccCCCchHHhhc
Q 018468 303 EQQNGLKTLGTLFSSMMFPDRVPKDLYLYTTFVGGSRNKELAKASTYKELQS 354 (355)
Q Consensus 303 ~~~~~~~~~~~~~~s~~~~~~~p~~~~~l~~~~~g~~~~~~~~~sd~e~~~~ 354 (355)
+ +..+.+++|++. | +++..+|..|++|..++++..++|+|+++.
T Consensus 643 ~---~~~~~~~~~d~~--p---~g~~~vL~~~i~G~~a~~l~~lsdeel~~~ 686 (776)
T 4gut_A 643 S---KRGLFAVFYDMD--P---QKKHSVLMSVIAGEAVASVRTLDDKQVLQQ 686 (776)
T ss_dssp G---GTTEEEEEEESC--T---TSCSCEEEEEECTHHHHHHHTSCHHHHHHH
T ss_pred C---CCceEEEEecCC--C---CCCceEEEEEecchhHHHHHcCCHHHHHHH
Confidence 4 345777888753 2 122468999999988889999999998764
No 25
>3k7m_X 6-hydroxy-L-nicotine oxidase; enantiomeric substrates, flavoenzymes, nicotine degradation, oxidoreductase; HET: FAD GP7; 1.95A {Arthrobacter nicotinovorans} PDB: 3k7q_X* 3ng7_X* 3ngc_X* 3nh3_X* 3nho_X* 3nk0_X* 3nk1_X* 3nk2_X* 3nn0_X* 3nn6_X* 3k7t_A*
Probab=99.66 E-value=7.9e-16 Score=146.32 Aligned_cols=293 Identities=11% Similarity=0.049 Sum_probs=177.0
Q ss_pred CeeecCCCCCceEEEeecC---CeEEcccCCeeecC-cHHHHHHHHHcCCccccccccCCCceEE-EECCEEeec---CC
Q 018468 1 MVFEADERAGGKLRSISKD---GLIWDEGANTMTES-EMEVKGLLDDLGIREKQQFPISQYKRYV-VRNGVPFLI---PT 72 (355)
Q Consensus 1 ~vlEA~drvGGri~T~~~~---g~~~d~G~~~~~~~-~~~~~~l~~~lGl~~~~~~~~~~~~~~i-~~~g~~~~~---p~ 72 (355)
+||||++|+||++.|...+ |..+|+|++++... ++.++++++++|+...... .....++ +.++++... +.
T Consensus 28 ~vlE~~~~~GG~~~t~~~~cipg~~~~~g~~~~~~~~~~~~~~~~~~~g~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~ 105 (431)
T 3k7m_X 28 LLLEGGERLGGRAYSRESRNVPGLRVEIGGAYLHRKHHPRLAAELDRYGIPTAAAS--EFTSFRHRLGPTAVDQAFPIPG 105 (431)
T ss_dssp EEECSSSSSBTTCCEEECSSSTTCEEESSCCCBCTTTCHHHHHHHHHHTCCEEECC--CCCEECCBSCTTCCSSSSCCCG
T ss_pred EEEecCCCccCeecceeccCCCCceEecCCeeeCCCCcHHHHHHHHHhCCeeeecC--CCCcEEEEecCCeecCCCCCCH
Confidence 5899999999999999887 99999999988877 8999999999999764322 1111111 123333211 11
Q ss_pred CchhhhhcccCChhHHHHHhcccccccCCCcccccCCCCCCCHHHHHHHhhcHHHHHHHhhhhhhccccCCcccchHHhh
Q 018468 73 NPIALLTSNFLSAQSKFQIILEPFLWKKSDSAKVSAEDAKESVGGFFQRHFGREVVDFLIDPFVAGTSAGDPESLVMRHS 152 (355)
Q Consensus 73 ~~~~~l~~~~ls~~~~~~~~~~~~~~~~~~~~~~~~~~~~~sv~~~l~~~~~~~~~~~~~~p~~~~~~~~~~~~lS~~~~ 152 (355)
.....+.... ......... +....+.........+ .|+.+|+.+....+....++.+++.+.++.+++++|+..+
T Consensus 106 ~~~~~~~~~~---~~l~~~~~~-~~~~~~~~~~~~~~~d-~s~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~ 180 (431)
T 3k7m_X 106 SEAVAVEAAT---YTLLRDAHR-IDLEKGLENQDLEDLD-IPLNEYVDKLDLPPVSRQFLLAWAWNMLGQPADQASALWM 180 (431)
T ss_dssp GGHHHHHHHH---HHHHHHHTT-CCTTTCTTSSSCGGGC-SBHHHHHHHHTCCHHHHHHHHHHHHHHHSSCTTTSBHHHH
T ss_pred HHHHHHHHHH---HHHHHHHHh-cCCCCCccCcchhhhc-CCHHHHHHhcCCCHHHHHHHHHHHHHhcCCChhhhhHHHH
Confidence 1111110000 000011111 1000000000001234 9999999987666777778999999999999999999887
Q ss_pred chHHHHHHHhhCchHHHHHHhhhhhhhhhhhhhcCchhhhcCCcceeEeCcchhhHHhhcccc------C------cccC
Q 018468 153 FPELWNLEKRYGSVIAGAIKSKFSARKEKSAEAKGSSEKKRRQRGSFSFLGGMQVLSLSYSHD------G------RSAL 220 (355)
Q Consensus 153 l~~l~~~~~~~gs~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~gG~~~l~~~l~~~------~------~~~~ 220 (355)
+..+.. ..+.+ ...+. .. ...+.+|++.+..++..+ + ....
T Consensus 181 ~~~~~~---~~~~~-~~~~~--------------------~~---~~~~~~g~~~l~~~~~~~~g~i~~~~~V~~i~~~~ 233 (431)
T 3k7m_X 181 LQLVAA---HHYSI-LGVVL--------------------SL---DEVFSNGSADLVDAMSQEIPEIRLQTVVTGIDQSG 233 (431)
T ss_dssp HHHHHH---TTSCH-HHHHH--------------------TC---CEEETTCTHHHHHHHHTTCSCEESSCCEEEEECSS
T ss_pred HHHHHh---cCCcc-ceeec--------------------ch---hhhcCCcHHHHHHHHHhhCCceEeCCEEEEEEEcC
Confidence 654432 11222 22110 01 127889999998776432 1 1234
Q ss_pred CCeEEEecCCCcccceeecCEEEEcCChhhhhHhhhccCCCCc-ccCCCCCCCCcceEEEEEEecCCCCCCCCCceEEEe
Q 018468 221 ENWSLCSSNQEKQSLGLSFDAVIMTAPLCNVKEMKITKGGNLF-PLDFLPEVIYMPLSVIITTFKKENVRRPLEGFGVLV 299 (355)
Q Consensus 221 ~~~~V~~~~g~~~~~~~~ad~VI~a~P~~~l~~l~~~~~~~~~-~~~~l~~~~~~~v~~v~l~~~~~~~~~~~~g~g~l~ 299 (355)
++++|++.+|. +++||+||+|+|++++.++. +.|.+|. ..++++.+.+...+||.+.|+++++ ++.. .
T Consensus 234 ~~v~v~~~~g~----~~~ad~vi~a~~~~~l~~i~-~~p~l~~~~~~~~~~~~~~~~~kv~~~~~~~~~-----~i~~-~ 302 (431)
T 3k7m_X 234 DVVNVTVKDGH----AFQAHSVIVATPMNTWRRIV-FTPALPERRRSVIEEGHGGQGLKILIHVRGAEA-----GIEC-V 302 (431)
T ss_dssp SSEEEEETTSC----CEEEEEEEECSCGGGGGGSE-EESCCCHHHHHHHHHCCCCCEEEEEEEEESCCT-----TEEE-E
T ss_pred CeEEEEECCCC----EEEeCEEEEecCcchHhhee-eCCCCCHHHHHHHHhCCCcceEEEEEEECCCCc-----CceE-c
Confidence 56888888774 79999999999999999885 4554444 3456777889999999999998652 2211 1
Q ss_pred cCCCCCCCCceEEEEecCCCCCCCCCCCceEEEEEecCCCCccccCCCchHHh
Q 018468 300 PSKEQQNGLKTLGTLFSSMMFPDRVPKDLYLYTTFVGGSRNKELAKASTYKEL 352 (355)
Q Consensus 300 ~~~~~~~~~~~~~~~~~s~~~~~~~p~~~~~l~~~~~g~~~~~~~~~sd~e~~ 352 (355)
.+ .....+|+.... .++..+|..++.|.. +...+++++.
T Consensus 303 ~d-------~~~~~~~~~~~~----~~~~~~l~~~~~g~~---~~~~~~~~~~ 341 (431)
T 3k7m_X 303 GD-------GIFPTLYDYCEV----SESERLLVAFTDSGS---FDPTDIGAVK 341 (431)
T ss_dssp BS-------SSSSEEEEEEEC----SSSEEEEEEEEETTT---CCTTCHHHHH
T ss_pred CC-------CCEEEEEeCcCC----CCCCeEEEEEecccc---CCCCCHHHHH
Confidence 11 122345554321 123468888887765 3334444443
No 26
>4dgk_A Phytoene dehydrogenase; the FAD/NAD(P)-binding rossmann fold, oxidoreductase; 2.35A {Pantoea ananatis}
Probab=99.51 E-value=5.2e-13 Score=129.30 Aligned_cols=288 Identities=13% Similarity=0.111 Sum_probs=126.6
Q ss_pred CeeecCCCCCceEEEeecCCeEEcccCCeeecCcHHHHHHHHHcCCcccc--cc-ccCCCceEEEECCEEeecCCCchhh
Q 018468 1 MVFEADERAGGKLRSISKDGLIWDEGANTMTESEMEVKGLLDDLGIREKQ--QF-PISQYKRYVVRNGVPFLIPTNPIAL 77 (355)
Q Consensus 1 ~vlEA~drvGGri~T~~~~g~~~d~G~~~~~~~~~~~~~l~~~lGl~~~~--~~-~~~~~~~~i~~~g~~~~~p~~~~~~ 77 (355)
+||||++++|||++|++.+|+.+|.|+|++.. ...+.++++.+|..... .. +......+.+.+|+.+.++.+...+
T Consensus 28 ~VlEa~~~~GG~~~t~~~~G~~~D~G~~~~~~-~~~~~~l~~~~g~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~ 106 (501)
T 4dgk_A 28 LLLEQRDKPGGRAYVYEDQGFTFDAGPTVITD-PSAIEELFALAGKQLKEYVELLPVTPFYRLCWESGKVFNYDNDQTRL 106 (501)
T ss_dssp EEECCC-------CEEEETTEEEECSCCCBSC-THHHHHHHHTTTCCGGGTCCEEEESSSEEEEETTSCEEEECSCHHHH
T ss_pred EEEccCCCCCCcEEEEEeCCEEEecCceeecC-chhHHHHHHHhcchhhhceeeEecCcceEEEcCCCCEEEeeccHHHH
Confidence 58999999999999999999999999997643 33466788888754321 11 1121223344567776666654332
Q ss_pred hhc-ccCChhHH------HHHhcccccccCCCcccccCCCCC-------------------CCHHHHHHHhhcHHHHHHH
Q 018468 78 LTS-NFLSAQSK------FQIILEPFLWKKSDSAKVSAEDAK-------------------ESVGGFFQRHFGREVVDFL 131 (355)
Q Consensus 78 l~~-~~ls~~~~------~~~~~~~~~~~~~~~~~~~~~~~~-------------------~sv~~~l~~~~~~~~~~~~ 131 (355)
... .-+++.+. +..+...+....... ...+. .|+.+++.+.+.++..+.+
T Consensus 107 ~~~l~~~~p~~~~~~~~~~~~~~~~~~~~~~~~----~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~l~~~ 182 (501)
T 4dgk_A 107 EAQIQQFNPRDVEGYRQFLDYSRAVFKEGYLKL----GTVPFLSFRDMLRAAPQLAKLQAWRSVYSKVASYIEDEHLRQA 182 (501)
T ss_dssp HHHHHHHCTHHHHHHHHHHHHHHHHTSSSCC------CCCCCCCHHHHHHSGGGTTTSHHHHHHHHHHHTTCCCHHHHHH
T ss_pred HHHHhhcCccccchhhhHHHHHHHhhhhhhhhc----cccccchhhhhhhhhhhhhhhhhcccHHHHHHHHhccHHHHhh
Confidence 210 00111111 111111110000000 01112 2445555554444444444
Q ss_pred hhhhhhccccCCcccchHHhhchHHHHHHHhhCchHHHHHHhhhhhhhhhhhhhcCchhhhcCCcceeEeCcchhhHHhh
Q 018468 132 IDPFVAGTSAGDPESLVMRHSFPELWNLEKRYGSVIAGAIKSKFSARKEKSAEAKGSSEKKRRQRGSFSFLGGMQVLSLS 211 (355)
Q Consensus 132 ~~p~~~~~~~~~~~~lS~~~~l~~l~~~~~~~gs~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~gG~~~l~~~ 211 (355)
+... ...++.++.+.++...+ +. .. ....+.+.++||+++|+++
T Consensus 183 l~~~-~~~~g~~p~~~~~~~~~--~~------------~~---------------------~~~~G~~~p~GG~~~l~~a 226 (501)
T 4dgk_A 183 FSFH-SLLVGGNPFATSSIYTL--IH------------AL---------------------EREWGVWFPRGGTGALVQG 226 (501)
T ss_dssp HHHH-HHHHHSCC--CCCTHHH--HH------------HH---------------------HSCCCEEEETTHHHHHHHH
T ss_pred hhhh-hcccCCCcchhhhhhhh--hh------------hh---------------------hccCCeEEeCCCCcchHHH
Confidence 3321 12233444443322111 00 00 0112467899999999988
Q ss_pred cccc----------Ccc------cCCCeE-EEecCCCcccceeecCEEEEcCChhhhhHhhhccC--CCCcccCCCCCCC
Q 018468 212 YSHD----------GRS------ALENWS-LCSSNQEKQSLGLSFDAVIMTAPLCNVKEMKITKG--GNLFPLDFLPEVI 272 (355)
Q Consensus 212 l~~~----------~~~------~~~~~~-V~~~~g~~~~~~~~ad~VI~a~P~~~l~~l~~~~~--~~~~~~~~l~~~~ 272 (355)
|+.. +.+ .+++++ |++.+|+ ++.||+||+++++..+.+.+ +++ ......+.+++.+
T Consensus 227 L~~~~~~~Gg~I~~~~~V~~I~~~~~~~~gV~~~~g~----~~~ad~VV~~a~~~~~~~~L-l~~~~~~~~~~~~~~~~~ 301 (501)
T 4dgk_A 227 MIKLFQDLGGEVVLNARVSHMETTGNKIEAVHLEDGR----RFLTQAVASNADVVHTYRDL-LSQHPAAVKQSNKLQTKR 301 (501)
T ss_dssp HHHHHHHTTCEEECSCCEEEEEEETTEEEEEEETTSC----EEECSCEEECCC---------------------------
T ss_pred HHHHHHHhCCceeeecceeEEEeeCCeEEEEEecCCc----EEEcCEEEECCCHHHHHHHh-ccccccchhhhhhhhccc
Confidence 7531 111 223333 6777875 89999999999888776543 332 2222344566666
Q ss_pred Cc-ceEEEEEEecCCCCCCCCCceEEEecCCCCC-----------CCCceEEEEecCCCCCCCCCCCceEEEEEec
Q 018468 273 YM-PLSVIITTFKKENVRRPLEGFGVLVPSKEQQ-----------NGLKTLGTLFSSMMFPDRVPKDLYLYTTFVG 336 (355)
Q Consensus 273 ~~-~v~~v~l~~~~~~~~~~~~g~g~l~~~~~~~-----------~~~~~~~~~~~s~~~~~~~p~~~~~l~~~~~ 336 (355)
++ ++.++++.++.+.- ......+.+.....+ .+.+.+-+...|...|..+|+|++.+.+++.
T Consensus 302 ~~~s~~~~~~~l~~~~~--~l~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~s~~dp~~ap~G~~~~~~~~~ 375 (501)
T 4dgk_A 302 MSNSLFVLYFGLNHHHD--QLAHHTVCFGPRYRELIDEIFNHDGLAEDFSLYLHAPCVTDSSLAPEGCGSYYVLAP 375 (501)
T ss_dssp -CCEEEEEEEEESSCCT--TSCSEEEEEECC-------------CCCEEEEEEECGGGTCGGGSSTTCEEEEEEEE
T ss_pred cCCceeEEEecccCCcc--ccccceeccccchhhhccccccccccccCCceecccCCCCCCCcCCCCCceEEEEEe
Confidence 54 45667778776431 222222222211100 0122333444555566778888888777764
No 27
>3ayj_A Pro-enzyme of L-phenylalanine oxidase; amino acid oxidase, flavoenzyme, L- binding, oxidoreductase; HET: FAD PHE; 1.10A {Pseudomonas} PDB: 2yr4_A* 2yr6_A* 3ayi_A* 2yr5_A* 3ayl_A*
Probab=99.47 E-value=3.2e-14 Score=141.31 Aligned_cols=48 Identities=19% Similarity=0.207 Sum_probs=43.4
Q ss_pred CeeecCC-CC----------------CceEEEeec-------CCeEEcccCCeeecCcHHHHHHHHHc-CCcc
Q 018468 1 MVFEADE-RA----------------GGKLRSISK-------DGLIWDEGANTMTESEMEVKGLLDDL-GIRE 48 (355)
Q Consensus 1 ~vlEA~d-rv----------------GGri~T~~~-------~g~~~d~G~~~~~~~~~~~~~l~~~l-Gl~~ 48 (355)
+|||+++ |+ |||+.|.+. +++.+|+|++++...++.++++++++ |+..
T Consensus 91 ~v~E~~~~r~~~~~~g~~~~~~~g~~GGr~~t~~~~~~~~~~~~~~~e~G~~~~~~~~~~~~~~~~~l~gl~~ 163 (721)
T 3ayj_A 91 QIYEADPDSFLHDRPGIKAIKVRGLKAGRVSAALVHNGDPASGDTIYEVGAMRFPEIAGLTWHYASAAFGDAA 163 (721)
T ss_dssp EEECCCTTBGGGCC----CEECTTCEETTEEEEEECSSCGGGCSEEEECSCCCEETTCHHHHHHHHHHHCTTC
T ss_pred EEEeccCcccccccchhhHHHhcCcCCceEEEEEccCCcccCCCcEEecCCEEecCccHHHHHHHHHhcCCcc
Confidence 5899999 99 999999977 45899999999988888999999999 9973
No 28
>1d5t_A Guanine nucleotide dissociation inhibitor; ultra-high resolution, hydrolase inhibitor; 1.04A {Bos taurus} SCOP: c.3.1.3 d.16.1.6 PDB: 1lv0_A* 1gnd_A
Probab=99.38 E-value=2.3e-11 Score=115.63 Aligned_cols=287 Identities=11% Similarity=0.072 Sum_probs=152.0
Q ss_pred CeeecCCCCCceEEEee-----c----------------CCeEEcccCCeeecCcHHHHHHHHHcCCccccccccCCCce
Q 018468 1 MVFEADERAGGKLRSIS-----K----------------DGLIWDEGANTMTESEMEVKGLLDDLGIREKQQFPISQYKR 59 (355)
Q Consensus 1 ~vlEA~drvGGri~T~~-----~----------------~g~~~d~G~~~~~~~~~~~~~l~~~lGl~~~~~~~~~~~~~ 59 (355)
+|+|+++++||+++|.+ . .++.+|+||+++... ..+.++++++|+...+.+... ...
T Consensus 33 ~~~e~~~~~gg~~~s~~~~~~g~~~~~~~~~~~~~~~~g~~~~~d~gP~~l~~~-~~l~~ll~~lgl~~~l~~~~~-~~~ 110 (433)
T 1d5t_A 33 LHMDRNPYYGGESSSITPLEELYKRFQLLEGPPETMGRGRDWNVDLIPKFLMAN-GQLVKMLLYTEVTRYLDFKVV-EGS 110 (433)
T ss_dssp EEECSSSSSCTTSCEECSHHHHHHHTTCTTCCCGGGCCGGGCCEESSCCBEETT-SHHHHHHHHHTGGGGCCEEEC-CEE
T ss_pred EEEecCCCccccccccccHHHHHhhccCCCCChhHhcccCceEEccCcceeecc-chHHHHHHHcCCccceEEEEe-Cce
Confidence 48999999999999998 1 457899999977654 468899999999765433222 246
Q ss_pred EEEECCEEeecCCCchhhhhcccCChhHHHHH---hcccccccCCCccc-ccCCCCCCCHHHHHHHhhcHHHHHHHhhhh
Q 018468 60 YVVRNGVPFLIPTNPIALLTSNFLSAQSKFQI---ILEPFLWKKSDSAK-VSAEDAKESVGGFFQRHFGREVVDFLIDPF 135 (355)
Q Consensus 60 ~i~~~g~~~~~p~~~~~~l~~~~ls~~~~~~~---~~~~~~~~~~~~~~-~~~~~~~~sv~~~l~~~~~~~~~~~~~~p~ 135 (355)
|++.+|+.+.+|.+....+...+.+..++.++ +..........+.. .....++.|+.+|+++.+-.+..+.++...
T Consensus 111 ~~~~~g~~~~~p~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~s~~~~l~~~~~~~~l~~~l~~~ 190 (433)
T 1d5t_A 111 FVYKGGKIYKVPSTETEALASNLMGMFEKRRFRKFLVFVANFDENDPKTFEGVDPQNTSMRDVYRKFDLGQDVIDFTGHA 190 (433)
T ss_dssp EEEETTEEEECCCSHHHHHHCSSSCHHHHHHHHHHHHHHHHCCTTCGGGGTTCCTTTSBHHHHHHHTTCCHHHHHHHHHH
T ss_pred EEeeCCEEEECCCCHHHHhhCcccChhhHHHHHHHHHHHHhhcccCchhccccccccCCHHHHHHHcCCCHHHHHHHHHH
Confidence 77789999999987545455555555443322 11111000000000 001346899999998764444444444333
Q ss_pred hhccccCCcccchHHhhchHHHHHHHhhCchHHHHHHhhhhhhhhhhhhhcCchhhhcCCcceeEeCcchhhHHhhcccc
Q 018468 136 VAGTSAGDPESLVMRHSFPELWNLEKRYGSVIAGAIKSKFSARKEKSAEAKGSSEKKRRQRGSFSFLGGMQVLSLSYSHD 215 (355)
Q Consensus 136 ~~~~~~~~~~~lS~~~~l~~l~~~~~~~gs~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~gG~~~l~~~l~~~ 215 (355)
+....+.++.+.++...+..+..... ++ .. ......+.++||++.++++++..
T Consensus 191 ~~~~~~~~~~~~p~~~~~~~~~~~~~---s~-----~~-------------------~g~~~~~~p~gG~~~l~~~l~~~ 243 (433)
T 1d5t_A 191 LALYRTDDYLDQPCLETINRIKLYSE---SL-----AR-------------------YGKSPYLYPLYGLGELPQGFARL 243 (433)
T ss_dssp TSCCSSSGGGGSBSHHHHHHHHHHHH---SC-----CS-------------------SSCCSEEEETTCTTHHHHHHHHH
T ss_pred HHhccCCCccCCCHHHHHHHHHHHHH---HH-----Hh-------------------cCCCcEEEeCcCHHHHHHHHHHH
Confidence 22222234555554433222211100 00 00 01123568999999998876421
Q ss_pred ----C------cc------cCCCeEEEecCCCcccceeecCEEEEcCChhhhhHhhhccCCCCcccCCCCCCCCcceEEE
Q 018468 216 ----G------RS------ALENWSLCSSNQEKQSLGLSFDAVIMTAPLCNVKEMKITKGGNLFPLDFLPEVIYMPLSVI 279 (355)
Q Consensus 216 ----~------~~------~~~~~~V~~~~g~~~~~~~~ad~VI~a~P~~~l~~l~~~~~~~~~~~~~l~~~~~~~v~~v 279 (355)
+ .+ ..+++.+...+|. ++.||+||+|+|+... . +.. +.. ....
T Consensus 244 ~~~~G~~i~~~~~V~~I~~~~~~v~~v~~~g~----~~~ad~VV~a~~~~~~--~--~~~-----------~~~--~~~~ 302 (433)
T 1d5t_A 244 SAIYGGTYMLNKPVDDIIMENGKVVGVKSEGE----VARCKQLICDPSYVPD--R--VRK-----------AGQ--VIRI 302 (433)
T ss_dssp HHHHTCCCBCSCCCCEEEEETTEEEEEEETTE----EEECSEEEECGGGCGG--G--EEE-----------EEE--EEEE
T ss_pred HHHcCCEEECCCEEEEEEEeCCEEEEEEECCe----EEECCEEEECCCCCcc--c--ccc-----------cCc--ceeE
Confidence 1 11 1223332223553 8899999999988642 2 111 111 1111
Q ss_pred EEEecCCC-CCCCCCceEEEecCCCCCCCCceEEEEecCCCCCCCCCCCceEEEEEecCCC
Q 018468 280 ITTFKKEN-VRRPLEGFGVLVPSKEQQNGLKTLGTLFSSMMFPDRVPKDLYLYTTFVGGSR 339 (355)
Q Consensus 280 ~l~~~~~~-~~~~~~g~g~l~~~~~~~~~~~~~~~~~~s~~~~~~~p~~~~~l~~~~~g~~ 339 (355)
.+..+++. +.+......++++....+ +.+.+-+...| ..|..+|+|++++.+++..+.
T Consensus 303 ~~il~~~~~~~~~~~~~~i~~~~~~~~-~~~~~~v~~~s-~d~~~aP~G~~~~~~~~~~p~ 361 (433)
T 1d5t_A 303 ICILSHPIKNTNDANSCQIIIPQNQVN-RKSDIYVCMIS-YAHNVAAQGKYIAIASTTVET 361 (433)
T ss_dssp EEEESSCCTTSTTCSSEEEEECGGGTT-CSSCEEEEEEE-GGGTSSCTTCEEEEEEEECCS
T ss_pred EEEEcCcccccCCCceEEEEeCccccC-CCCCEEEEEEC-CCCcccCCCCEEEEEEEecCC
Confidence 22245432 111112334455542211 12233333334 345678888888877775543
No 29
>3p1w_A Rabgdi protein; GDI RAB, malaria, structural genomics consortium, SGC, trans PF10_0345, protein transport; 1.85A {Plasmodium falciparum 3D7}
Probab=99.29 E-value=1.7e-11 Score=116.87 Aligned_cols=213 Identities=15% Similarity=0.120 Sum_probs=135.1
Q ss_pred CeeecCCCCCceEEEeecC--------------------CeEEcccCCeeecCcHHHHHHHHHcCCccccccccCCCceE
Q 018468 1 MVFEADERAGGKLRSISKD--------------------GLIWDEGANTMTESEMEVKGLLDDLGIREKQQFPISQYKRY 60 (355)
Q Consensus 1 ~vlEA~drvGGri~T~~~~--------------------g~~~d~G~~~~~~~~~~~~~l~~~lGl~~~~~~~~~~~~~~ 60 (355)
+|+|+++++||++.|...+ +|.+|++++.+. .+..+.+++.++|+..++.+... ...|
T Consensus 47 ~~~e~~~~~Gg~~~s~~~~~l~~~~~~g~~~~~~~g~~R~y~iDL~P~~l~-~~g~L~~lL~~~gv~~ylef~~~-~~~y 124 (475)
T 3p1w_A 47 LVLDRNPYYGGETASLNLTNLYNTFKPKENIPSKYGENRHWNVDLIPKFIL-VGGNLVKILKKTRVTNYLEWLVV-EGSY 124 (475)
T ss_dssp EEECSSSSSCGGGCEECHHHHHHHHCTTSCCCGGGCCGGGCCEESSCCBEE-TTSHHHHHHHHTTCGGGSCEEEC-SEEE
T ss_pred EEEeccCCCCCCccccchhhhhhhcccCCCcccccccccceEEeecCeEee-cCcHHHHHHHHCCchheeEEEec-Ccce
Confidence 4899999999999998532 478999999665 45678999999999988766544 3466
Q ss_pred EEE---------CCEEeecCCCchhhhhcccCChhHHHHHhccc--cc-ccCCCcccc-cCCCCCCCHHHHHHH-hhcHH
Q 018468 61 VVR---------NGVPFLIPTNPIALLTSNFLSAQSKFQIILEP--FL-WKKSDSAKV-SAEDAKESVGGFFQR-HFGRE 126 (355)
Q Consensus 61 i~~---------~g~~~~~p~~~~~~l~~~~ls~~~~~~~~~~~--~~-~~~~~~~~~-~~~~~~~sv~~~l~~-~~~~~ 126 (355)
++. +|+++++|.+..++++++++++.+|.++.+-. +. ....++... ....++.|+.+|+++ .+.+.
T Consensus 125 ~~~~~~~~~~~~~g~~~~VPss~~e~~~~~lLs~~eK~~l~kFL~~l~~~~~~~~~~~~~~~l~~~s~~e~l~~~gls~~ 204 (475)
T 3p1w_A 125 VYQHQKKGFLTSEKFIHKVPATDMEALVSPLLSLMEKNRCKNFYQYVSEWDANKRNTWDNLDPYKLTMLEIYKHFNLCQL 204 (475)
T ss_dssp EEEEECCCSSSCCEEEEECCCSHHHHHTCTTSCHHHHHHHHHHHHHHHHCCTTCGGGSTTCCTTTSBHHHHHHHTTCCHH
T ss_pred EEecCccccccCCCceEeCCCCHHHHhhccCCCHHHHHHHHHHHHHHHhhhhccchhhhcccccCCCHHHHHHHcCCCHH
Confidence 665 57789999998888888999999998764322 11 100000000 012357899999987 34566
Q ss_pred HHHHHhhhhhhccccCCcccchHHhhchHHHHHHHhhCchHHHHHHhhhhhhhhhhhhhcCchhhhcCCcceeEeCcchh
Q 018468 127 VVDFLIDPFVAGTSAGDPESLVMRHSFPELWNLEKRYGSVIAGAIKSKFSARKEKSAEAKGSSEKKRRQRGSFSFLGGMQ 206 (355)
Q Consensus 127 ~~~~~~~p~~~~~~~~~~~~lS~~~~l~~l~~~~~~~gs~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~gG~~ 206 (355)
+.+.++.++.... ..+..+.++...+..+..... |+ .. ........++||++
T Consensus 205 l~~fl~~alaL~~-~~~~~~~~a~~~l~ri~~y~~---Sl-----~~-------------------yg~s~~~yp~gG~~ 256 (475)
T 3p1w_A 205 TIDFLGHAVALYL-NDDYLKQPAYLTLERIKLYMQ---SI-----SA-------------------FGKSPFIYPLYGLG 256 (475)
T ss_dssp HHHHHHHHTSCCS-SSGGGGSBHHHHHHHHHHHHH---HH-----HH-------------------HSSCSEEEETTCTT
T ss_pred HHHHHHHHHHhhc-CCCcccCCHHHHHHHHHHHHH---HH-----hh-------------------cCCCceEEECCCHH
Confidence 6665544443222 123444566655544432211 11 00 11223567999999
Q ss_pred hHHhhcccc----C------c-----cc-CCC--eEEEecCCCcccceeecCEEEEcCC
Q 018468 207 VLSLSYSHD----G------R-----SA-LEN--WSLCSSNQEKQSLGLSFDAVIMTAP 247 (355)
Q Consensus 207 ~l~~~l~~~----~------~-----~~-~~~--~~V~~~~g~~~~~~~~ad~VI~a~P 247 (355)
.|+++++.. + . .. .++ +.|++.+|+ ++.||+||++..
T Consensus 257 ~L~~aL~r~~~~~Gg~i~l~t~V~~I~~d~~g~v~gV~~~~G~----~i~Ad~VI~a~~ 311 (475)
T 3p1w_A 257 GIPEGFSRMCAINGGTFMLNKNVVDFVFDDDNKVCGIKSSDGE----IAYCDKVICDPS 311 (475)
T ss_dssp HHHHHHHHHHHHC--CEESSCCEEEEEECTTSCEEEEEETTSC----EEEEEEEEECGG
T ss_pred HHHHHHHHHHHHcCCEEEeCCeEEEEEEecCCeEEEEEECCCc----EEECCEEEECCC
Confidence 999876421 1 1 11 222 456676764 799999999964
No 30
>3qj4_A Renalase; FAD/NAD(P)-binding rossmann fold superfamily, flavin contain oxidoreductase, monoamine oxidase, NAD, extracellular, oxidoreductase; HET: FAD; 2.50A {Homo sapiens}
Probab=99.20 E-value=4.8e-12 Score=116.44 Aligned_cols=143 Identities=10% Similarity=0.070 Sum_probs=103.4
Q ss_pred eeEeCcchhhHHhhcccc-------C------cccCCCeEEEecCCCcccceeecCEEEEcCChhhhhHhhhccC----C
Q 018468 198 SFSFLGGMQVLSLSYSHD-------G------RSALENWSLCSSNQEKQSLGLSFDAVIMTAPLCNVKEMKITKG----G 260 (355)
Q Consensus 198 ~~~~~gG~~~l~~~l~~~-------~------~~~~~~~~V~~~~g~~~~~~~~ad~VI~a~P~~~l~~l~~~~~----~ 260 (355)
.+...+|++++.++++.. + .+..++|+|++.+|. ++.||+||+|+|++.+.+|+ .+ +
T Consensus 104 ~~~~~~g~~~l~~~l~~~~g~~i~~~~~V~~i~~~~~~~~v~~~~g~----~~~ad~vV~A~p~~~~~~ll--~~~~~~l 177 (342)
T 3qj4_A 104 NFVAPQGISSIIKHYLKESGAEVYFRHRVTQINLRDDKWEVSKQTGS----PEQFDLIVLTMPVPEILQLQ--GDITTLI 177 (342)
T ss_dssp EEECTTCTTHHHHHHHHHHTCEEESSCCEEEEEECSSSEEEEESSSC----CEEESEEEECSCHHHHTTCB--STHHHHS
T ss_pred ceecCCCHHHHHHHHHHhcCCEEEeCCEEEEEEEcCCEEEEEECCCC----EEEcCEEEECCCHHHHHHHh--ccccccc
Confidence 466788999998776431 1 124567999887774 68999999999999999984 32 2
Q ss_pred CCcccCCCCCCCCcceEEEEEEecCCCCCCCCCceEEEecCCCCCCCCceEEEE-ecCCCCCCCC-CCCceEEEEEecCC
Q 018468 261 NLFPLDFLPEVIYMPLSVIITTFKKENVRRPLEGFGVLVPSKEQQNGLKTLGTL-FSSMMFPDRV-PKDLYLYTTFVGGS 338 (355)
Q Consensus 261 ~~~~~~~l~~~~~~~v~~v~l~~~~~~~~~~~~g~g~l~~~~~~~~~~~~~~~~-~~s~~~~~~~-p~~~~~l~~~~~g~ 338 (355)
+++..+.+++++|.++.+|++.|++++|. +...+|+++++. ..++++ +++++ +.+. +++..++++++++.
T Consensus 178 ~~~~~~~l~~~~~~~~~~v~l~~~~~~~~-~~~~~g~~~~~~------~~~~~~~~~~~k-~~r~~~~~~~~~v~~~~~~ 249 (342)
T 3qj4_A 178 SECQRQQLEAVSYSSRYALGLFYEAGTKI-DVPWAGQYITSN------PCIRFVSIDNKK-RNIESSEIGPSLVIHTTVP 249 (342)
T ss_dssp CHHHHHHHHTCCBCCEEEEEEECSSCC---CCSCSEEECSSC------SSEEEEEEHHHH-TTCCCC-CCCEEEEEECHH
T ss_pred CHHHHHHHhcCCccccEEEEEEECCCCcc-CCceeeEEccCC------cceEEEEccccC-CCCCCCCCCceEEEECCHH
Confidence 22446788999999999999999987664 334568888743 234555 56665 5433 33335788999998
Q ss_pred CCccccCCCchHHhhc
Q 018468 339 RNKELAKASTYKELQS 354 (355)
Q Consensus 339 ~~~~~~~~sd~e~~~~ 354 (355)
+++++.+++|+|+++.
T Consensus 250 ~~~~~~~~~~~~~~~~ 265 (342)
T 3qj4_A 250 FGVTYLEHSIEDVQEL 265 (342)
T ss_dssp HHHHTTTSCHHHHHHH
T ss_pred HHHHhhcCCHHHHHHH
Confidence 8889999999998764
No 31
>2bcg_G Secretory pathway GDP dissociation inhibitor; RABGTPase, geranylgeranylation, vesicular transport, protein transport; HET: GDP GER; 1.48A {Saccharomyces cerevisiae} SCOP: c.3.1.3 c.3.1.3 d.16.1.6 PDB: 1ukv_G* 3cpi_G 3cph_G 3cpj_G*
Probab=99.19 E-value=6.9e-10 Score=106.04 Aligned_cols=130 Identities=14% Similarity=0.195 Sum_probs=76.1
Q ss_pred CeeecCCCCCceEEEeecCC-eE---------------Ec--------ccCCeeecCcHHHHHHHHHcCCccccccccCC
Q 018468 1 MVFEADERAGGKLRSISKDG-LI---------------WD--------EGANTMTESEMEVKGLLDDLGIREKQQFPISQ 56 (355)
Q Consensus 1 ~vlEA~drvGGri~T~~~~g-~~---------------~d--------~G~~~~~~~~~~~~~l~~~lGl~~~~~~~~~~ 56 (355)
+|||+++++||+++|++.+| +. ++ +|++++. ....+.++++++|+...+.+...
T Consensus 38 ~vlE~~~~~GG~~~t~~~~g~~~~~d~~~~~~~~~~~~~~~g~~~~~~l~P~~l~-~~~~l~~ll~~lg~~~~l~~~~~- 115 (453)
T 2bcg_G 38 LHIDKQDHYGGEAASVTLSQLYEKFKQNPISKEERESKFGKDRDWNVDLIPKFLM-ANGELTNILIHTDVTRYVDFKQV- 115 (453)
T ss_dssp EEECSSSSSCGGGCEECHHHHHHHHCSSCCCHHHHHHHHCCGGGCCEESSCCBEE-TTSHHHHHHHHHTGGGTCCEEEC-
T ss_pred EEEeCCCCCCccccceeccchhceeccCCccccCcchhcccccceeeccccceee-cCcHHHHHHHhcCCccceEEEEc-
Confidence 58999999999999986554 21 33 4444332 34678999999999765433222
Q ss_pred CceEEEECCEEeecCCCchhhhhcccCChhHHHHH---hcccccccCCCcccc-cCCCCCCCHHHHHHHhhcHHHHHHHh
Q 018468 57 YKRYVVRNGVPFLIPTNPIALLTSNFLSAQSKFQI---ILEPFLWKKSDSAKV-SAEDAKESVGGFFQRHFGREVVDFLI 132 (355)
Q Consensus 57 ~~~~i~~~g~~~~~p~~~~~~l~~~~ls~~~~~~~---~~~~~~~~~~~~~~~-~~~~~~~sv~~~l~~~~~~~~~~~~~ 132 (355)
...|++.+|+.+.+|.+....+...+++..++.++ +..........+... ....++.|+.+|+.+.+-.+....++
T Consensus 116 ~~~~~~~~g~~~~~p~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~s~~~~l~~~~~~~~l~~~l 195 (453)
T 2bcg_G 116 SGSYVFKQGKIYKVPANEIEAISSPLMGIFEKRRMKKFLEWISSYKEDDLSTHQGLDLDKNTMDEVYYKFGLGNSTKEFI 195 (453)
T ss_dssp CCEEEEETTEEEECCSSHHHHHHCTTSCHHHHHHHHHHHHHHHHCBTTBGGGSTTCCTTTSBHHHHHHHTTCCHHHHHHH
T ss_pred cceeEEeCCeEEECCCChHHHHhhhccchhhHHHHHHHHHHHHHhccCCchhhhccccccCCHHHHHHHhCCCHHHHHHH
Confidence 25777889999999987445555566665554322 111110000000000 01246889999998754433333343
No 32
>1vg0_A RAB proteins geranylgeranyltransferase component A 1; RAB prenylation, post-translational modification, protein binding/protein transport complex; HET: GER GDP PG4; 2.20A {Rattus norvegicus} SCOP: c.3.1.3 d.16.1.6 PDB: 1vg9_A* 1ltx_R*
Probab=98.87 E-value=1.3e-07 Score=93.01 Aligned_cols=263 Identities=11% Similarity=0.053 Sum_probs=146.3
Q ss_pred CCeEEcccCCeeecCcHHHHHHHHHcCCccccccccCCCceEEEECCEEeecCCCchhhhhcccCChhHHHHHhcccccc
Q 018468 19 DGLIWDEGANTMTESEMEVKGLLDDLGIREKQQFPISQYKRYVVRNGVPFLIPTNPIALLTSNFLSAQSKFQIILEPFLW 98 (355)
Q Consensus 19 ~g~~~d~G~~~~~~~~~~~~~l~~~lGl~~~~~~~~~~~~~~i~~~g~~~~~p~~~~~~l~~~~ls~~~~~~~~~~~~~~ 98 (355)
.+|.+|+||+.+.... .+.+++.++|+...+.+... ...|++.+|+++.+|.+...+++.+.+++.+|.++.+-....
T Consensus 222 R~f~~DL~PklL~~~g-~lv~LL~~sgV~~yLEFk~v-~~~y~~~~G~~~~VPas~~eif~s~~Lsl~EKr~L~kFl~~~ 299 (650)
T 1vg0_A 222 RRFNIDLVSKLLYSRG-LLIDLLIKSNVSRYAEFKNI-TRILAFREGTVEQVPCSRADVFNSKQLTMVEKRMLMKFLTFC 299 (650)
T ss_dssp GGCCEESSCCCEESSS-HHHHHHHHHTGGGGCCEEEC-CEEEEESSSSEEECCCSHHHHHHCSSSCHHHHHHHHHHHHHH
T ss_pred CCeEEeeCCeeeeCCc-HHHHHHHHcCCcceeeEEEc-cceEEecCCCEeECCCCHHHHHhCcCCCHHHHHHHHHHHHHH
Confidence 5899999999777544 58999999999887666443 356777788888999998888988999999987754421000
Q ss_pred cCC--CcccccCCCCCCCHHHHHHHhhcHHHHHHHhhhhhhccccCCcccchHHhhchHHHHHHHhhCchHHHHHHhhhh
Q 018468 99 KKS--DSAKVSAEDAKESVGGFFQRHFGREVVDFLIDPFVAGTSAGDPESLVMRHSFPELWNLEKRYGSVIAGAIKSKFS 176 (355)
Q Consensus 99 ~~~--~~~~~~~~~~~~sv~~~l~~~~~~~~~~~~~~p~~~~~~~~~~~~lS~~~~l~~l~~~~~~~gs~~~g~~~~~~~ 176 (355)
... ++. .....+..|+.+|+++.+.....+.++.-.+ +++..+. .++...+..+.......+.
T Consensus 300 ~~~~~~p~-~~~~~d~~S~~d~L~~~~ls~~L~~~L~~~l-al~~~~~--~pa~~~l~~i~~~l~sl~~----------- 364 (650)
T 1vg0_A 300 VEYEEHPD-EYRAYEGTTFSEYLKTQKLTPNLQYFVLHSI-AMTSETT--SCTVDGLKATKKFLQCLGR----------- 364 (650)
T ss_dssp HTGGGCHH-HHHTTTTSBHHHHHTTSSSCHHHHHHHHHHT-TC--CCS--CBHHHHHHHHHHHHHHTTS-----------
T ss_pred HHhccChH-HHhhhccCCHHHHHHHhCCCHHHHHHHHHHH-hccCCCC--CchhHHHHHHHHHHHHHHh-----------
Confidence 000 000 0024568999999998644333444443222 4443322 2222222211111000000
Q ss_pred hhhhhhhhhcCchhhhcCCcceeEeCcchhhHHhhccc----cC------cc------cC--CCeE-EEecCCCccccee
Q 018468 177 ARKEKSAEAKGSSEKKRRQRGSFSFLGGMQVLSLSYSH----DG------RS------AL--ENWS-LCSSNQEKQSLGL 237 (355)
Q Consensus 177 ~~~~~~~~~~~~~~~~~~~~~~~~~~gG~~~l~~~l~~----~~------~~------~~--~~~~-V~~~~g~~~~~~~ 237 (355)
..+.+.+.+.||++.|+++|+. .| .+ .. +.+. |+..+|. ++
T Consensus 365 ----------------yg~sg~~yp~GG~g~L~qaL~r~~~~~Gg~i~l~~~V~~I~~~~~~g~v~gV~~~~Ge----~i 424 (650)
T 1vg0_A 365 ----------------YGNTPFLFPLYGQGELPQCFCRMCAVFGGIYCLRHSVQCLVVDKESRKCKAVIDQFGQ----RI 424 (650)
T ss_dssp ----------------SSSSSEEEETTCTTHHHHHHHHHHHHTTCEEESSCCEEEEEEETTTCCEEEEEETTSC----EE
T ss_pred ----------------hccCceEEeCCchhHHHHHHHHHHHHcCCEEEeCCEeeEEEEeCCCCeEEEEEeCCCC----EE
Confidence 1112467899999999987742 11 11 11 2232 3334564 89
Q ss_pred ecCEEEEcCChhhhhHhhhccCCCCcccCCCCCCCCcceEEEEEEecCCCCCCCCC-ceE-EEecCCCCCCCCceEEEEe
Q 018468 238 SFDAVIMTAPLCNVKEMKITKGGNLFPLDFLPEVIYMPLSVIITTFKKENVRRPLE-GFG-VLVPSKEQQNGLKTLGTLF 315 (355)
Q Consensus 238 ~ad~VI~a~P~~~l~~l~~~~~~~~~~~~~l~~~~~~~v~~v~l~~~~~~~~~~~~-g~g-~l~~~~~~~~~~~~~~~~~ 315 (355)
.||+||++ +..+ +. .. .+++.++.+.++.+.++++.-..... ..+ .++|.... ..+.+-++-
T Consensus 425 ~A~~VVs~--~~~l------p~---~~---~~~~~~~~v~R~i~i~~~pi~~~~~~~~~~~iiiP~~~g--~~~~V~i~~ 488 (650)
T 1vg0_A 425 ISKHFIIE--DSYL------SE---NT---CSRVQYRQISRAVLITDGSVLRTDADQQVSILTVPAEEP--GSFAVRVIE 488 (650)
T ss_dssp ECSEEEEE--GGGB------CT---TT---TTTCCCEEEEEEEEEESSCSSCCSCCCCCEEEEECCSST--TSCCEEEEE
T ss_pred EcCEEEEC--hhhc------CH---hH---hccccccceEEEEEEecCCCCCcCCCcceEEEEccCccC--CCCCEEEEE
Confidence 99999982 2221 11 11 12235677899999998764321111 123 33565531 122333333
Q ss_pred cCCCCCCCCCCCceEEEEEe
Q 018468 316 SSMMFPDRVPKDLYLYTTFV 335 (355)
Q Consensus 316 ~s~~~~~~~p~~~~~l~~~~ 335 (355)
.|+ .+..+|+|.+++-+..
T Consensus 489 ~Ss-~~~~cP~G~~Vv~lst 507 (650)
T 1vg0_A 489 LCS-STMTCMKGTYLVHLTC 507 (650)
T ss_dssp ECG-GGTSSCTTCEEEEEEE
T ss_pred eCC-CCCCCCCCCEEEEEEe
Confidence 333 4456788877655443
No 33
>2e1m_A L-glutamate oxidase; L-amino acid oxidase, FAD, L-GOX, flavo oxidoreductase; HET: FAD; 2.80A {Streptomyces SP}
Probab=98.57 E-value=3.6e-08 Score=91.35 Aligned_cols=50 Identities=22% Similarity=0.463 Sum_probs=44.9
Q ss_pred CeeecC-CCCCceEEEee----------cCCeEEcccCCeeecCcHHHHHHHHHcCCcccc
Q 018468 1 MVFEAD-ERAGGKLRSIS----------KDGLIWDEGANTMTESEMEVKGLLDDLGIREKQ 50 (355)
Q Consensus 1 ~vlEA~-drvGGri~T~~----------~~g~~~d~G~~~~~~~~~~~~~l~~~lGl~~~~ 50 (355)
+|||++ +|+|||++|++ ..|+.+|.|++++...++.++++++++|+....
T Consensus 71 ~VlE~~~~~vGGr~~t~~~~~~~~~~~~~~~~~~e~G~~~~~~~~~~~~~~~~~lGl~~~~ 131 (376)
T 2e1m_A 71 TILEANANRVGGRIKTFHAKKGEPSPFADPAQYAEAGAMRLPSFHPLTLALIDKLGLKRRL 131 (376)
T ss_dssp EEECSCSSCCBTTCCEECCCTTSCCSSSSTTCCEESSCCCEETTCHHHHHHHHHTTCCEEE
T ss_pred EEEeccccccCCceeeecccccccccccCCCcEEecCceeecchHHHHHHHHHHcCCCcce
Confidence 589999 99999999998 358899999999888889999999999998754
No 34
>1yvv_A Amine oxidase, flavin-containing; oxidoreductase, PSR10, Q888A4, X-RAY, structure, PSI, protein structure initiative; HET: FAD; 2.50A {Pseudomonas syringae} PDB: 3kkj_A*
Probab=98.35 E-value=9.6e-07 Score=80.32 Aligned_cols=138 Identities=16% Similarity=0.201 Sum_probs=98.3
Q ss_pred eEeCcchhhHHhhcccc-----C------cccCCCeEEEecCCCccccee-ecCEEEEcCChhhhhHhhhccCCCCcccC
Q 018468 199 FSFLGGMQVLSLSYSHD-----G------RSALENWSLCSSNQEKQSLGL-SFDAVIMTAPLCNVKEMKITKGGNLFPLD 266 (355)
Q Consensus 199 ~~~~gG~~~l~~~l~~~-----~------~~~~~~~~V~~~~g~~~~~~~-~ad~VI~a~P~~~l~~l~~~~~~~~~~~~ 266 (355)
+....|++.+..+++.. + .+..++|+|++.+|. .. .||+||+|+|+..+.+++ . ..|++..
T Consensus 103 ~~~~~~~~~l~~~l~~g~~i~~~~~v~~i~~~~~~~~v~~~~g~----~~~~a~~vV~a~g~~~~~~~~--~-~~~~l~~ 175 (336)
T 1yvv_A 103 WVGKPGMSAITRAMRGDMPVSFSCRITEVFRGEEHWNLLDAEGQ----NHGPFSHVIIATPAPQASTLL--A-AAPKLAS 175 (336)
T ss_dssp EEESSCTHHHHHHHHTTCCEECSCCEEEEEECSSCEEEEETTSC----EEEEESEEEECSCHHHHGGGG--T-TCHHHHH
T ss_pred EEcCccHHHHHHHHHccCcEEecCEEEEEEEeCCEEEEEeCCCc----CccccCEEEEcCCHHHHHHhh--c-cCHHHHH
Confidence 44567888888766421 1 124567899887774 44 499999999999999984 3 2455566
Q ss_pred CCCCCCCcceEEEEEEecCCCCCCCCCceEEEecCCCCCCCCceEEEEecCCCCCCCCCCCceEEEEEecCCCCccccCC
Q 018468 267 FLPEVIYMPLSVIITTFKKENVRRPLEGFGVLVPSKEQQNGLKTLGTLFSSMMFPDRVPKDLYLYTTFVGGSRNKELAKA 346 (355)
Q Consensus 267 ~l~~~~~~~v~~v~l~~~~~~~~~~~~g~g~l~~~~~~~~~~~~~~~~~~s~~~~~~~p~~~~~l~~~~~g~~~~~~~~~ 346 (355)
.+..+.|.++.++++.|++++|. +..++ .++. ..++++|+++.+|.+.+.+ ..++++..+.+++++.++
T Consensus 176 ~~~~~~~~~~~~~~~~~~~~~~~-~~~~~--~~~~-------~~~~~l~~~~~~p~~~~~~-~~~v~~~~~~~~~~~~~~ 244 (336)
T 1yvv_A 176 VVAGVKMDPTWAVALAFETPLQT-PMQGC--FVQD-------SPLDWLARNRSKPERDDTL-DTWILHATSQWSRQNLDA 244 (336)
T ss_dssp HHTTCCEEEEEEEEEEESSCCSC-CCCEE--EECS-------SSEEEEEEGGGSTTCCCSS-EEEEEEECHHHHHHTTTS
T ss_pred HHhhcCccceeEEEEEecCCCCC-CCCeE--EeCC-------CceeEEEecCcCCCCCCCC-cEEEEEeCHHHHHHHHhC
Confidence 77889999999999999988653 33343 3332 2478898888777654421 467777777777888999
Q ss_pred CchHHhhc
Q 018468 347 STYKELQS 354 (355)
Q Consensus 347 sd~e~~~~ 354 (355)
+++++++.
T Consensus 245 ~~~~~~~~ 252 (336)
T 1yvv_A 245 SREQVIEH 252 (336)
T ss_dssp CHHHHHHH
T ss_pred CHHHHHHH
Confidence 99988764
No 35
>2e1m_B L-glutamate oxidase; L-amino acid oxidase, FAD, L-GOX, flavo oxidoreductase; HET: FAD; 2.80A {Streptomyces SP}
Probab=98.35 E-value=6.4e-08 Score=75.14 Aligned_cols=92 Identities=15% Similarity=0.087 Sum_probs=61.1
Q ss_pred ceeecCEEEEcCChhhhhHhhhccCCCC-cccCCCCCCCCcceEEEEEEecCCCCCCCCCceEEEecCCCCCCCCceEEE
Q 018468 235 LGLSFDAVIMTAPLCNVKEMKITKGGNL-FPLDFLPEVIYMPLSVIITTFKKENVRRPLEGFGVLVPSKEQQNGLKTLGT 313 (355)
Q Consensus 235 ~~~~ad~VI~a~P~~~l~~l~~~~~~~~-~~~~~l~~~~~~~v~~v~l~~~~~~~~~~~~g~g~l~~~~~~~~~~~~~~~ 313 (355)
++++||+||||+|+.+++.|. +.|.+| .+.++++++.|++..||.+.|+++||+.. +..
T Consensus 4 ~~~~Ad~VIvTvP~~vL~~I~-F~P~LP~~k~~Ai~~l~~g~~~Kv~l~f~~~FW~~~--~~~----------------- 63 (130)
T 2e1m_B 4 QTWTGDLAIVTIPFSSLRFVK-VTPPFSYKKRRAVIETHYDQATKVLLEFSRRWWEFT--EAD----------------- 63 (130)
T ss_dssp EEEEESEEEECSCHHHHTTSE-EESCCCHHHHHHHHHCCEECEEEEEEEESSCGGGCC--HHH-----------------
T ss_pred eEEEcCEEEEcCCHHHHhcCc-CCCCCCHHHHHHHHhCCCcceeEEEEEECCCCCCCC--Ccc-----------------
Confidence 478999999999999999987 555445 45678899999999999999999999632 211
Q ss_pred EecCCCCCCCCCCCceEEEEEec-CCCCccccCCCchHH
Q 018468 314 LFSSMMFPDRVPKDLYLYTTFVG-GSRNKELAKASTYKE 351 (355)
Q Consensus 314 ~~~s~~~~~~~p~~~~~l~~~~~-g~~~~~~~~~sd~e~ 351 (355)
++.+ .++. +.+++..|++ |..+.++..++++|.
T Consensus 64 -gd~s-~~~~---~pg~l~~f~~wg~~A~~~~~l~~~~r 97 (130)
T 2e1m_B 64 -WKRE-LDAI---APGLYDYYQQWGEDDAEAALALPQSV 97 (130)
T ss_dssp -HHHH-HHHH---STTHHHHHHHHCCCSCCCC-------
T ss_pred -cccc-CCCC---CCeEEEEecccCHHHHHHhcCCHHHH
Confidence 1111 0011 1136777775 888888888877664
No 36
>3kkj_A Amine oxidase, flavin-containing; oxidoreductase, PSR10, Q888A4, X-RAY, structure, PSI, protein structure initiative; HET: FAD; 2.50A {Pseudomonas syringae PV}
Probab=95.37 E-value=0.0093 Score=51.04 Aligned_cols=44 Identities=20% Similarity=0.337 Sum_probs=36.8
Q ss_pred CeeecCCCCCceEEEeecCCeEEcccCCeeecCcHHHHHHHHHc
Q 018468 1 MVFEADERAGGKLRSISKDGLIWDEGANTMTESEMEVKGLLDDL 44 (355)
Q Consensus 1 ~vlEA~drvGGri~T~~~~g~~~d~G~~~~~~~~~~~~~l~~~l 44 (355)
+|||+++++|||+.|.+..+..+|+|++.+......+......+
T Consensus 29 ~v~Ek~~~~GG~~~~~~~~~~~~d~g~~~~~~~~~~~~~~~~~~ 72 (336)
T 3kkj_A 29 HLFDKSRGSGGRMSSKRSDAGALDMGAQYFTARDRRFATAVKQW 72 (336)
T ss_dssp EEECSSSSSCGGGCEEEETTEEEECSCCCBCCCSHHHHHHHHHH
T ss_pred EEEECCCCCCCcccccccCCceeecCccccccCcHHHHHHHHHH
Confidence 58999999999999999999999999998876666665555443
No 37
>1yvv_A Amine oxidase, flavin-containing; oxidoreductase, PSR10, Q888A4, X-RAY, structure, PSI, protein structure initiative; HET: FAD; 2.50A {Pseudomonas syringae} PDB: 3kkj_A*
Probab=86.15 E-value=0.46 Score=42.19 Aligned_cols=46 Identities=20% Similarity=0.310 Sum_probs=39.8
Q ss_pred CeeecCCCCCceEEEeecCCeEEcccCCeeecCcHHHHHHHHHcCC
Q 018468 1 MVFEADERAGGKLRSISKDGLIWDEGANTMTESEMEVKGLLDDLGI 46 (355)
Q Consensus 1 ~vlEA~drvGGri~T~~~~g~~~d~G~~~~~~~~~~~~~l~~~lGl 46 (355)
+|||+++++||++.+....+..+|.|++.+....+.+.++++++..
T Consensus 29 ~vlE~~~~~gg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 74 (336)
T 1yvv_A 29 HLFDKSRGSGGRMSSKRSDAGALDMGAQYFTARDRRFATAVKQWQA 74 (336)
T ss_dssp EEECSSSSSCGGGCEEEETTEEEECSCCCBCCCSHHHHHHHHHHHH
T ss_pred EEEECCCCCcccceeEecCCCeEecCCCeEecCCHHHHHHHHHHHh
Confidence 5899999999999999999999999999887777788888877643
No 38
>3qj4_A Renalase; FAD/NAD(P)-binding rossmann fold superfamily, flavin contain oxidoreductase, monoamine oxidase, NAD, extracellular, oxidoreductase; HET: FAD; 2.50A {Homo sapiens}
Probab=72.58 E-value=1.7 Score=38.73 Aligned_cols=44 Identities=20% Similarity=0.367 Sum_probs=32.1
Q ss_pred CeeecCCCCCceEEEeec---CCeEEcccCCeeecCcH---HHHHHHHHc
Q 018468 1 MVFEADERAGGKLRSISK---DGLIWDEGANTMTESEM---EVKGLLDDL 44 (355)
Q Consensus 1 ~vlEA~drvGGri~T~~~---~g~~~d~G~~~~~~~~~---~~~~l~~~l 44 (355)
+|||+++.+|||+.+.+. .+..+|.|++.+..... .+.++++++
T Consensus 31 ~v~Ek~~~~gg~~~~~~~~~~~~~~~d~g~~~~~~~~~~~~~~~~~~~~~ 80 (342)
T 3qj4_A 31 AVWDKADDSGGRMTTACSPHNPQCTADLGAQYITCTPHYAKKHQRFYDEL 80 (342)
T ss_dssp EEECSSSSSCGGGCEEECSSCTTCEEESSCCCEEECSSHHHHTHHHHHHH
T ss_pred EEEECCCCCccceeeeecCCCCCceEecCCceEEcCchHHHHHHHHHHHH
Confidence 589999999999998875 45689999997754332 444555443
No 39
>2e1m_C L-glutamate oxidase; L-amino acid oxidase, FAD, L-GOX, flavo oxidoreductase; HET: FAD; 2.80A {Streptomyces SP}
Probab=32.34 E-value=7.6 Score=31.24 Aligned_cols=26 Identities=0% Similarity=-0.047 Sum_probs=22.2
Q ss_pred eEEEEEecCCCCccccCCCchHHhhc
Q 018468 329 YLYTTFVGGSRNKELAKASTYKELQS 354 (355)
Q Consensus 329 ~~l~~~~~g~~~~~~~~~sd~e~~~~ 354 (355)
.+|..|+.|..++.+..++++|+++.
T Consensus 37 ~~L~~~~~g~~A~~~~~l~~~e~~~~ 62 (181)
T 2e1m_C 37 VVLAAYSWSDDAARWDSFDDAERYGY 62 (181)
T ss_dssp EEEEEEEEHHHHHHHTTSCTTTTHHH
T ss_pred EEEEEEcCChHHHHHHcCCHHHHHHH
Confidence 68889999988889999999987653
Done!