BLASTP 2.2.26 [Sep-21-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.


Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 018469
         (355 letters)

Database: pdbaa 
           62,578 sequences; 14,973,337 total letters

Searching..................................................done



>pdb|1JGT|A Chain A, Crystal Structure Of Beta-Lactam Synthetase
 pdb|1JGT|B Chain B, Crystal Structure Of Beta-Lactam Synthetase
 pdb|1M1Z|A Chain A, Beta-Lactam Synthetase Apo Enzyme
 pdb|1M1Z|B Chain B, Beta-Lactam Synthetase Apo Enzyme
 pdb|1MB9|A Chain A, Beta-Lactam Synthetase Complexed With Atp
 pdb|1MB9|B Chain B, Beta-Lactam Synthetase Complexed With Atp
 pdb|1MBZ|A Chain A, Beta-Lactam Synthetase With Trapped Intermediate
 pdb|1MBZ|B Chain B, Beta-Lactam Synthetase With Trapped Intermediate
 pdb|1MC1|A Chain A, Beta-Lactam Synthetase With Product (Dgpc), Amp And Ppi
 pdb|1MC1|B Chain B, Beta-Lactam Synthetase With Product (Dgpc), Amp And Ppi
          Length = 513

 Score = 33.1 bits (74), Expect = 0.25,   Method: Compositional matrix adjust.
 Identities = 45/170 (26%), Positives = 69/170 (40%), Gaps = 25/170 (14%)

Query: 27  LQRALASPSQRRNLLQELFADI---ALEVDDR--ARDIILSGEEGGICPAEDGIDSRLCF 81
           L RAL  P +R  +L    ADI    +  +DR  A D +L+ +        DG++     
Sbjct: 333 LYRALDGPERR--ILTGYGADIPLGGMHREDRLPALDTVLAHDMATF----DGLNEMSPV 386

Query: 82  YDVLADHYVRMPESGQRILDLIVQLWSQLFVSHIFALLFHKWIFEVQLNNDEVLLRYSSA 141
              LA H+   P   + +LDL+V L + L   H       KW+    + +         A
Sbjct: 387 LSTLAGHWTTHPYWDREVLDLLVSLEAGLKRRHG----RDKWVLRAAMAD---------A 433

Query: 142 LVQGATNVFWIDIQTNSRHFQSLFRYLLEEVALEPARLNKIPVQVQRDLF 191
           L     N   + +   S    S  R LL+    E  R+++   QV R+LF
Sbjct: 434 LPAETVNRPKLGVHEGSGTTSSFSRLLLDHGVAE-DRVHEAKRQVVRELF 482


  Database: pdbaa
    Posted date:  Mar 3, 2013 10:34 PM
  Number of letters in database: 14,973,337
  Number of sequences in database:  62,578
  
Lambda     K      H
   0.326    0.138    0.428 

Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 10,093,221
Number of Sequences: 62578
Number of extensions: 400734
Number of successful extensions: 930
Number of sequences better than 100.0: 2
Number of HSP's better than 100.0 without gapping: 0
Number of HSP's successfully gapped in prelim test: 2
Number of HSP's that attempted gapping in prelim test: 930
Number of HSP's gapped (non-prelim): 2
length of query: 355
length of database: 14,973,337
effective HSP length: 100
effective length of query: 255
effective length of database: 8,715,537
effective search space: 2222461935
effective search space used: 2222461935
T: 11
A: 40
X1: 15 ( 7.1 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 40 (21.7 bits)
S2: 52 (24.6 bits)