Query 018469
Match_columns 355
No_of_seqs 22 out of 24
Neff 2.9
Searched_HMMs 46136
Date Fri Mar 29 09:17:07 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/018469.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/018469hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 CHL00170 cpcA phycocyanin alph 66.8 3.5 7.7E-05 37.6 1.8 19 271-289 65-83 (162)
2 TIGR01338 phycocy_alpha phycoc 64.5 4.3 9.4E-05 36.9 1.9 19 271-289 64-82 (161)
3 PF07216 LcrG: LcrG protein; 48.1 27 0.00059 29.9 3.8 39 23-63 10-48 (93)
4 COG4114 FhuF Uncharacterized F 47.2 66 0.0014 31.7 6.7 71 82-156 59-132 (251)
5 PRK04330 hypothetical protein; 41.5 22 0.00047 30.1 2.3 41 261-301 7-47 (88)
6 PF03685 UPF0147: Uncharacteri 36.0 25 0.00053 29.6 1.8 41 261-301 4-44 (85)
7 CHL00172 cpeB phycoerythrin be 35.2 30 0.00065 32.2 2.4 23 271-294 65-87 (177)
8 COG5186 PAP1 Poly(A) polymeras 35.1 26 0.00057 36.9 2.3 50 267-323 221-272 (552)
9 COG1698 Uncharacterized protei 34.0 35 0.00075 29.2 2.4 43 261-303 11-53 (93)
10 CHL00173 cpeA phycoerythrin al 30.8 42 0.00092 30.7 2.6 23 271-294 65-87 (164)
11 PRK10647 ferric iron reductase 30.5 49 0.0011 32.3 3.1 69 81-154 69-142 (262)
12 PF12491 ApoB100_C: Apolipopro 29.4 38 0.00082 26.9 1.8 44 81-127 9-52 (58)
13 COG3687 Predicted metal-depend 28.9 51 0.0011 32.9 2.9 37 270-308 21-57 (280)
14 PF04648 MF_alpha: Yeast matin 28.0 30 0.00065 20.3 0.7 7 274-280 7-13 (13)
15 TIGR01339 phycocy_beta phycocy 27.1 42 0.00091 31.0 1.9 23 271-294 63-85 (170)
16 PF11707 Npa1: Ribosome 60S bi 26.6 4E+02 0.0086 26.0 8.6 132 185-333 129-300 (330)
17 cd06845 Bcl-2_like Apoptosis r 25.6 69 0.0015 27.4 2.9 81 10-107 33-124 (144)
18 PF02338 OTU: OTU-like cystein 24.1 1.1E+02 0.0023 24.5 3.6 33 75-108 2-38 (121)
19 PRK02866 cyanate hydratase; Va 22.8 1.7E+02 0.0037 26.6 4.9 47 51-104 58-105 (147)
20 TIGR02573 LcrG_PcrG type III s 22.0 1.1E+02 0.0024 26.2 3.3 38 23-62 7-44 (90)
21 PF12464 Mac: Maltose acetyltr 21.4 91 0.002 22.4 2.4 28 21-48 25-53 (55)
22 cd03562 CID CID (CTD-Interacti 20.8 2.7E+02 0.0059 22.5 5.4 80 14-113 33-112 (114)
No 1
>CHL00170 cpcA phycocyanin alpha subunit; Reviewed
Probab=66.75 E-value=3.5 Score=37.62 Aligned_cols=19 Identities=32% Similarity=0.434 Sum_probs=16.6
Q ss_pred cccCCCCCCCCChHHHHHH
Q 018469 271 SFTSPGGPMYPTRAVRHAA 289 (355)
Q Consensus 271 SfTsPGgP~Y~~R~VR~aA 289 (355)
.+|+|||++|++|.+|.||
T Consensus 65 ~l~~pgGn~y~~~~~~~aa 83 (162)
T CHL00170 65 YTTQMPGPTYASSAIGKAK 83 (162)
T ss_pred CcCCCCCCccccchhHHHH
Confidence 4799999999999987765
No 2
>TIGR01338 phycocy_alpha phycocyanin, alpha subunit. This model excludes the closely related phycoerythrocyanin alpha subunit.
Probab=64.46 E-value=4.3 Score=36.94 Aligned_cols=19 Identities=32% Similarity=0.387 Sum_probs=16.2
Q ss_pred cccCCCCCCCCChHHHHHH
Q 018469 271 SFTSPGGPMYPTRAVRHAA 289 (355)
Q Consensus 271 SfTsPGgP~Y~~R~VR~aA 289 (355)
.+|+|||++|++|.+|.+|
T Consensus 64 ~~~~pgGn~y~~~~~~~aa 82 (161)
T TIGR01338 64 YTTQMNGPNYASTATGKAK 82 (161)
T ss_pred CcCCCCCCCccchhhHHHH
Confidence 4799999999999986655
No 3
>PF07216 LcrG: LcrG protein; InterPro: IPR009863 This family consists of several bacterial LcrG proteins. Yersiniae are equipped with the Yop virulon, an apparatus that allows extracellular bacteria to deliver toxic Yop proteins inside the host cell cytosol in order to sabotage the communication networks of the host cell or even to cause cell death. LcrG is a component of the Yop virulon involved in the regulation of secretion of the Yops []. This protein is found in type III secretion operons, along with LcrR, H and V. Also known as PcrG in Pseudomonas, the prot ein is believed to make a 1:1 complex with PcrV (LcrV) []. Mutations in LcrG cause premature secretion of effector proteins into the medium [].
Probab=48.14 E-value=27 Score=29.88 Aligned_cols=39 Identities=21% Similarity=0.439 Sum_probs=32.7
Q ss_pred HHHHHHHHhcCchhHHHHHHHHHhhhhhhhchHHHHhhhcC
Q 018469 23 IEKKLQRALASPSQRRNLLQELFADIALEVDDRARDIILSG 63 (355)
Q Consensus 23 i~kkL~~Al~s~~qr~~ll~eLFadial~vDdra~~~i~~~ 63 (355)
+.++-..||+...+|..|++|+.+++ -|++.+-+.+++.
T Consensus 10 ti~~AE~AI~dsd~R~~llqEm~~gL--g~~p~ag~lLf~~ 48 (93)
T PF07216_consen 10 TIEQAELAIRDSDHRNDLLQEMLEGL--GLGPVAGELLFGG 48 (93)
T ss_pred HHHHHHHHHHhhHHHHHHHHHHHHhc--CCChhHHHHHhcC
Confidence 34556789999999999999999998 6788888888766
No 4
>COG4114 FhuF Uncharacterized Fe-S protein [General function prediction only]
Probab=47.17 E-value=66 Score=31.70 Aligned_cols=71 Identities=20% Similarity=0.343 Sum_probs=42.0
Q ss_pred HHHHHHHhh-hCCcchhhHHHHHHHHhhhhhHHHHHHHHHHHHHhhHhcCCcchhhhhhhHHhhcccc--eeeeeccc
Q 018469 82 YDVLADHYV-RMPESGQRILDLIVQLWSQLFVSHIFALLFHKWIFEVQLNNDEVLLRYSSALVQGATN--VFWIDIQT 156 (355)
Q Consensus 82 Y~vLA~yy~-~vPe~~~~~l~L~~qLwsq~~~~~IfalLF~~WLfE~~l~~~e~~lr~~n~lv~GAtn--lFW~Di~~ 156 (355)
-++-+|||+ ++|..-+. .-..+||||-|++.+=-=+.+--++..+.=. +.-.|.-+.-+-.+. .||.|+.-
T Consensus 59 ~~~y~dh~y~d~~~~pr~--k~laSlwSqwY~glmtpP~mlal~l~~qal~--~~~en~~v~fhetgr~~~f~~~~~~ 132 (251)
T COG4114 59 LAVYSDHYYGDQPGMPRE--KALASLWSQWYFGLMTPPLMLALLLQEQALD--VSPENFHVEFHETGRPACFYVDVCE 132 (251)
T ss_pred HHhhhhhhhccCCCCchH--HHHHHHHHHHHHHhhhHHHHHHHHHhhhccC--CChHHeEEEeccCCCcceEEeeecc
Confidence 345567777 55555544 6678999999998875544444444433222 233444444443344 89999843
No 5
>PRK04330 hypothetical protein; Provisional
Probab=41.45 E-value=22 Score=30.08 Aligned_cols=41 Identities=17% Similarity=0.204 Sum_probs=33.8
Q ss_pred hHHHHHHhhhcccCCCCCCCCChHHHHHHHHhhhhhcCCCC
Q 018469 261 TSTRLKTCLYSFTSPGGPMYPTRAVRHAAWDALDFLFPVGQ 301 (355)
Q Consensus 261 T~~rLqacLYSfTsPGgP~Y~~R~VR~aA~~~LD~LFP~Gr 301 (355)
...++|.|++=+..=-.=.=+||-+|+||-++.+.|-=.|.
T Consensus 7 ~e~~ik~~~~~L~~I~~D~sVPRNIRraa~ea~~~L~~e~~ 47 (88)
T PRK04330 7 NEEKIKQAIQMLEEIINDTSVPRNIRRAATEAKEILLNEEE 47 (88)
T ss_pred hHHHHHHHHHHHHHHhcCCCCChHHHHHHHHHHHHHhCcCc
Confidence 45788889888877777777899999999999999976553
No 6
>PF03685 UPF0147: Uncharacterised protein family (UPF0147); InterPro: IPR005354 The proteins in this entry are functionally uncharacterised.; PDB: 2QZG_C 2QSB_A.
Probab=35.99 E-value=25 Score=29.55 Aligned_cols=41 Identities=17% Similarity=0.153 Sum_probs=29.3
Q ss_pred hHHHHHHhhhcccCCCCCCCCChHHHHHHHHhhhhhcCCCC
Q 018469 261 TSTRLKTCLYSFTSPGGPMYPTRAVRHAAWDALDFLFPVGQ 301 (355)
Q Consensus 261 T~~rLqacLYSfTsPGgP~Y~~R~VR~aA~~~LD~LFP~Gr 301 (355)
+..++|.|.+=+..=-.=.=.||-||++|-++.|.|-=.|.
T Consensus 4 ~e~~i~~~~~~L~~I~~D~sVPRNIRr~a~ea~~~L~~e~~ 44 (85)
T PF03685_consen 4 NEEKIKQAIQMLERIINDTSVPRNIRRAAEEAKEILNNEEE 44 (85)
T ss_dssp HHHHHHHHHHHHHHHHT-TTS-HHHHHHHHHHHHHCT-TTS
T ss_pred HHHHHHHHHHHHHHHhcCCCCChHHHHHHHHHHHHHhCCCc
Confidence 34567777776655555556899999999999999987665
No 7
>CHL00172 cpeB phycoerythrin beta subunit; Provisional
Probab=35.24 E-value=30 Score=32.23 Aligned_cols=23 Identities=30% Similarity=0.478 Sum_probs=18.6
Q ss_pred cccCCCCCCCCChHHHHHHHHhhh
Q 018469 271 SFTSPGGPMYPTRAVRHAAWDALD 294 (355)
Q Consensus 271 SfTsPGgP~Y~~R~VR~aA~~~LD 294 (355)
..|.|||++|++|. ..|.|+=+|
T Consensus 65 ~l~~pGGn~y~~~r-~aaClRD~~ 87 (177)
T CHL00172 65 GLISPGGNCYTNRR-MAACLRDGE 87 (177)
T ss_pred CCCCCCCCCCcHHH-HHHHHHHHH
Confidence 58999999999998 666666554
No 8
>COG5186 PAP1 Poly(A) polymerase [RNA processing and modification]
Probab=35.13 E-value=26 Score=36.88 Aligned_cols=50 Identities=24% Similarity=0.634 Sum_probs=33.1
Q ss_pred Hhhhc--ccCCCCCCCCChHHHHHHHHhhhhhcCCCCccHHHHHHHHHhhcccCCcchh
Q 018469 267 TCLYS--FTSPGGPMYPTRAVRHAAWDALDFLFPVGQYPRHVISLFFRLLYPWCWPSSC 323 (355)
Q Consensus 267 acLYS--fTsPGgP~Y~~R~VR~aA~~~LD~LFP~Gr~~Rh~VsLfFRLLhPyywp~S~ 323 (355)
.|.|. +--|||-++.-=-- -.=.|+|. .-|--.|+=||++||-|.||.-+
T Consensus 221 RavYaN~~GfpGGVAwam~VA------RiCQLYPN-A~S~vIv~kFF~ils~WnWPqPv 272 (552)
T COG5186 221 RAVYANPYGFPGGVAWAMCVA------RICQLYPN-ASSFVIVCKFFEILSSWNWPQPV 272 (552)
T ss_pred hhhhccccCCcchHHHHHHHH------HHHhhccC-cchHhHHHHHHHHHHhcCCCCCe
Confidence 36664 44577743321111 13469995 55667899999999999999753
No 9
>COG1698 Uncharacterized protein conserved in archaea [Function unknown]
Probab=33.98 E-value=35 Score=29.25 Aligned_cols=43 Identities=19% Similarity=0.195 Sum_probs=30.5
Q ss_pred hHHHHHHhhhcccCCCCCCCCChHHHHHHHHhhhhhcCCCCcc
Q 018469 261 TSTRLKTCLYSFTSPGGPMYPTRAVRHAAWDALDFLFPVGQYP 303 (355)
Q Consensus 261 T~~rLqacLYSfTsPGgP~Y~~R~VR~aA~~~LD~LFP~Gr~~ 303 (355)
+..+++.|++=+-.-=.-.=+||-||+||-++.+.|=-.|.-|
T Consensus 11 ~~e~i~q~~~lL~~Ii~DttVPRNIRraA~~a~e~L~~e~e~p 53 (93)
T COG1698 11 SEEKINQVMQLLDEIIQDTTVPRNIRRAAEEAKEALNNEGESP 53 (93)
T ss_pred hHHHHHHHHHHHHHHHccccccHHHHHHHHHHHHHHhCCCCCc
Confidence 4456666655544433344589999999999999998777654
No 10
>CHL00173 cpeA phycoerythrin alpha subunit; Provisional
Probab=30.80 E-value=42 Score=30.71 Aligned_cols=23 Identities=13% Similarity=0.265 Sum_probs=18.4
Q ss_pred cccCCCCCCCCChHHHHHHHHhhh
Q 018469 271 SFTSPGGPMYPTRAVRHAAWDALD 294 (355)
Q Consensus 271 SfTsPGgP~Y~~R~VR~aA~~~LD 294 (355)
.+|.|||+.|++|. ..|.|+-+|
T Consensus 65 ~l~~pGG~~y~~~r-~aaC~RD~~ 87 (164)
T CHL00173 65 YLKNPGEAGDSQEK-VNKCYRDVD 87 (164)
T ss_pred CCCCCCCCCccchH-HHHHHHHHH
Confidence 48999999999998 666666554
No 11
>PRK10647 ferric iron reductase involved in ferric hydroximate transport; Provisional
Probab=30.55 E-value=49 Score=32.29 Aligned_cols=69 Identities=25% Similarity=0.447 Sum_probs=40.2
Q ss_pred HHHHHHHHhhhCCcchhhHHHHHHHHhhhhhHHHH-----HHHHHHHHHhhHhcCCcchhhhhhhHHhhcccceeeeec
Q 018469 81 FYDVLADHYVRMPESGQRILDLIVQLWSQLFVSHI-----FALLFHKWIFEVQLNNDEVLLRYSSALVQGATNVFWIDI 154 (355)
Q Consensus 81 fY~vLA~yy~~vPe~~~~~l~L~~qLwsq~~~~~I-----falLF~~WLfE~~l~~~e~~lr~~n~lv~GAtnlFW~Di 154 (355)
.=+..+++|+..-+.+.+-+.-+.+||+|-|++.+ ++++-+..-+....++--+.+. -+|--..||+|.
T Consensus 69 lL~~y~~~~~~~~~~~~~~~ral~SlWsk~Yf~ll~pp~l~a~l~~~~~L~l~~~~~~v~~~-----~~G~P~~~~~~~ 142 (262)
T PRK10647 69 LLAVYSDHIYRNQPTLKRENKPLYSLWAQWYIGLMVPPLMLALLTQPQALDVSPEHFHVEFH-----ETGRAACFWYDV 142 (262)
T ss_pred HHHHHHHHhcCCCcccCcchhHHHHHHHHHHHHHHHHHHHHHHHhcCCCCCCCccceEEEeC-----CCCCcceEEecc
Confidence 44455666766555567778889999999988873 3333333322222222111111 136667999999
No 12
>PF12491 ApoB100_C: Apolipoprotein B100 C terminal; InterPro: IPR022176 This domain family is found in eukaryotes, and is approximately 60 amino acids in length. There are two conserved sequence motifs: QLS and LIDL. ApoB100 has an essential role in the assembly and secretion of triglyceride-rich lipoproteins and lipids transport.
Probab=29.38 E-value=38 Score=26.85 Aligned_cols=44 Identities=23% Similarity=0.333 Sum_probs=32.4
Q ss_pred HHHHHHHHhhhCCcchhhHHHHHHHHhhhhhHHHHHHHHHHHHHhhH
Q 018469 81 FYDVLADHYVRMPESGQRILDLIVQLWSQLFVSHIFALLFHKWIFEV 127 (355)
Q Consensus 81 fY~vLA~yy~~vPe~~~~~l~L~~qLwsq~~~~~IfalLF~~WLfE~ 127 (355)
||+.|++||-+.-.+++++.+|-.|=+. ++..|-+=+-+||-..
T Consensus 9 ~sdqls~~yEK~IaeskrLIDLsIqnY~---~Fl~yi~eLL~~lq~a 52 (58)
T PF12491_consen 9 FSDQLSDYYEKFIAESKRLIDLSIQNYH---MFLRYITELLKELQSA 52 (58)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHH
Confidence 8999999999999999999999887442 3344444444565443
No 13
>COG3687 Predicted metal-dependent hydrolase [General function prediction only]
Probab=28.92 E-value=51 Score=32.93 Aligned_cols=37 Identities=22% Similarity=0.522 Sum_probs=30.7
Q ss_pred hcccCCCCCCCCChHHHHHHHHhhhhhcCCCCccHHHHH
Q 018469 270 YSFTSPGGPMYPTRAVRHAAWDALDFLFPVGQYPRHVIS 308 (355)
Q Consensus 270 YSfTsPGgP~Y~~R~VR~aA~~~LD~LFP~Gr~~Rh~Vs 308 (355)
++||.-+++-.+--+|+..-.++|-.|||.|- |++|.
T Consensus 21 Fd~s~~p~hw~~G~p~~T~vfNaLs~LlP~GE--~fFvd 57 (280)
T COG3687 21 FDLSDTPRHWVPGEPVATHVFNALSLLLPAGE--RFFVD 57 (280)
T ss_pred CccCCCCCCCCCCChHHHHHHHHHHHhccchh--HHHHH
Confidence 67888777777888899999999999999995 44443
No 14
>PF04648 MF_alpha: Yeast mating factor alpha hormone; InterPro: IPR006742 This repeated sequence,WHWLQLKPGQPMY, characterises the mating factor alpha-1 or alpha-1 mating pheromone [contains: Mating factor alpha].The hormone is excreted into the culture medium by haploid cells of the alpha mating type and acts on cells of the opposite mating type (type A) by binding to a cognate G-protein coupled receptor which is coupled to a downstream signal transduction pathway. It inhibits DNA synthesis in type A cells synchronising them with type alpha, and so mediates the conjugation process.; GO: 0000772 mating pheromone activity, 0019953 sexual reproduction, 0005576 extracellular region
Probab=28.03 E-value=30 Score=20.33 Aligned_cols=7 Identities=86% Similarity=1.668 Sum_probs=6.0
Q ss_pred CCCCCCC
Q 018469 274 SPGGPMY 280 (355)
Q Consensus 274 sPGgP~Y 280 (355)
+||-|||
T Consensus 7 ~~GqP~Y 13 (13)
T PF04648_consen 7 SPGQPMY 13 (13)
T ss_pred cCCCcCC
Confidence 6899987
No 15
>TIGR01339 phycocy_beta phycocyanin, beta subunit. This model excludes the closely related phycoerythrocyanin beta subunit.
Probab=27.11 E-value=42 Score=30.98 Aligned_cols=23 Identities=26% Similarity=0.580 Sum_probs=17.5
Q ss_pred cccCCCCCCCCChHHHHHHHHhhh
Q 018469 271 SFTSPGGPMYPTRAVRHAAWDALD 294 (355)
Q Consensus 271 SfTsPGgP~Y~~R~VR~aA~~~LD 294 (355)
..|+|||++|+||. ..|.|.=+|
T Consensus 63 ~l~~pGG~~y~~~r-~~aClRD~~ 85 (170)
T TIGR01339 63 QLIAPGGNAYTSRR-MAACLRDME 85 (170)
T ss_pred CCCCCCCCCCcHHH-HHHHHhhcc
Confidence 46899999999998 556665444
No 16
>PF11707 Npa1: Ribosome 60S biogenesis N-terminal; InterPro: IPR021714 Npa1p is required for ribosome biogenesis and operates in the same functional environment as Rsa3p and Dbp6p during early maturation of 60S ribosomal subunits []. The protein partners of Npa1p include eight putative helicases as well as the novel Npa2p factor. Npa1p can also associate with a subset of H/ACA and C/D small nucleolar RNPs (snoRNPs) involved in the chemical modification of residues in the vicinity of the peptidyl transferase centre []. The protein has also been referred to as Urb1, and this domain at the N-terminal is one of several conserved regions along the length.
Probab=26.62 E-value=4e+02 Score=26.01 Aligned_cols=132 Identities=20% Similarity=0.302 Sum_probs=77.7
Q ss_pred cchhhHHHHHHhHhhcccChhhHHHHHhhCCCCCCcccccCCCceeeehhcccchhHHHHHHHHhh--hhcCccccchhH
Q 018469 185 QVQRDLFLVLSRFIFFYNSVDKLESFLKQFPVFPNAFLVGGSADFFVIEVADQVEPVLLHYLSQIK--VLQGMELRMTTS 262 (355)
Q Consensus 185 qarrdl~~ils~F~fyYe~~~~l~~fl~~fp~~pn~~l~gg~aD~fV~El~dqvE~vLlhYL~~~~--~lkg~eL~~tT~ 262 (355)
.-|.-+...+-.|+-+ .+.....+++.+-+.+.+ +..++.++-.+++...|+-++ ++++-.+..+||
T Consensus 129 siR~~fI~F~Lsfl~~-~~~~~~~~lL~~~~~~~~----------l~k~l~~D~~~~v~~iL~~l~~~Vl~~~~v~r~~K 197 (330)
T PF11707_consen 129 SIRTNFIRFWLSFLSS-GDPELKRDLLSQKKLMSA----------LFKGLRKDPPETVILILETLKDKVLKDSSVSRSTK 197 (330)
T ss_pred CHHHHHHHHHHHHHcc-CCHHHHHHHHHcCchHHH----------HHhcccCCCHHHHHHHHHHHHHHhccCCCCChhhh
Confidence 3466666666665544 344566677766333222 223333333444444454433 566666666666
Q ss_pred HH---------HHHhhhcccCCCCCCCCChHHHHHHHHhhhh---------hcCC-CCccH-------------------
Q 018469 263 TR---------LKTCLYSFTSPGGPMYPTRAVRHAAWDALDF---------LFPV-GQYPR------------------- 304 (355)
Q Consensus 263 ~r---------LqacLYSfTsPGgP~Y~~R~VR~aA~~~LD~---------LFP~-Gr~~R------------------- 304 (355)
.+ |.+ ||+...+ -..++|+.+|-+-|=. .||+ |=|+|
T Consensus 198 ~~~fn~~~L~~l~~-Ly~~~~~----~~~~~~~~~vh~fL~~lcT~p~~Gv~f~d~~~~~~~~~~~~~~~~~~~~~~~~N 272 (330)
T PF11707_consen 198 CKLFNEWTLSQLAS-LYSRDGE----DEKSSVADLVHEFLLALCTDPKHGVCFPDNGWYPRESDSGVPVTINNKSFKINN 272 (330)
T ss_pred hhhcCHHHHHHHHH-HhcccCC----cccchHHHHHHHHHHHHhcCCCcccccCCCCcCcCcccccccccccCCCCCccc
Confidence 54 555 8888877 5567799999988865 4663 33333
Q ss_pred HHHHHHHHhhcccCCcchhHHHHHHHHHH
Q 018469 305 HVISLFFRLLYPWCWPSSCWNFIMSWLKA 333 (355)
Q Consensus 305 h~VsLfFRLLhPyywp~S~wn~i~~~ik~ 333 (355)
.++.-+-+.|.||..+. -.+-++++.++
T Consensus 273 k~L~~ll~~lkp~e~~~-q~~Lvl~Il~~ 300 (330)
T PF11707_consen 273 KLLLNLLKKLKPWEDDR-QQELVLKILKA 300 (330)
T ss_pred HHHHHHHHHCCCCccHH-HHHHHHHHHHH
Confidence 56677777899999773 45555555544
No 17
>cd06845 Bcl-2_like Apoptosis regulator proteins of the Bcl-2 family, named after B-cell lymphoma 2. This alignment model spans what have been described as Bcl-2 homology regions BH1, BH2, BH3, and BH4. Many members of this family have an additional C-terminal transmembrane segment. Some homologous proteins, which are not included in this model, may miss either the BH4 (Bax, Bak) or the BH2 (Bcl-X(S)) region, and some appear to only share the BH3 region (Bik, Bim, Bad, Bid, Egl-1). This family is involved in the regulation of the outer mitochondrial membrane's permeability and in promoting or preventing the release of apoptogenic factors, which in turn may trigger apoptosis by activating caspases. Bcl-2 and the closely related Bcl-X(L) are anti-apoptotic key regulators of programmed cell death. They are assumed to function via heterodimeric protein-protein interactions, binding pro-apoptotic proteins such as Bad (BCL2-antagonist of cell death), Bid, and Bim, by specifically interacting
Probab=25.60 E-value=69 Score=27.35 Aligned_cols=81 Identities=25% Similarity=0.336 Sum_probs=44.5
Q ss_pred CCCchHHHHHHHHHHHHHHHHhcCchhHH----HHHHHHHhhhhhhhchHHHHhhhcCCCC-CCCCcccCCCccch----
Q 018469 10 HRGSAYLNALTQEIEKKLQRALASPSQRR----NLLQELFADIALEVDDRARDIILSGEEG-GICPAEDGIDSRLC---- 80 (355)
Q Consensus 10 ~~~s~~~~~L~~ei~kkL~~Al~s~~qr~----~ll~eLFadial~vDdra~~~i~~~~~d-~Is~~~~~~~~~~c---- 80 (355)
...+.-+.+++-|+|+|.+.++..-.++. ..-.+.|..|+-++ + +| +|.= ||+.
T Consensus 33 ~~~~~~Lr~~~dele~~~~~~f~~~~~~l~~~~~~~~~~f~~v~~~l--------f---~dg~inW------GRIval~~ 95 (144)
T cd06845 33 SEVAETLRRVGDELEEKHRRLFENMCRQLNISPDNAYEVFQEVAREL--------F---EDGGINW------GRIVALFA 95 (144)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCcchHHHHHHHHHHHH--------h---ccCCCCh------HHHHHHHH
Confidence 34566778888999998888876544442 22233333332221 1 11 2322 2443
Q ss_pred HHHHHHHHhhh--CCcchhhHHHHHHHHh
Q 018469 81 FYDVLADHYVR--MPESGQRILDLIVQLW 107 (355)
Q Consensus 81 fY~vLA~yy~~--vPe~~~~~l~L~~qLw 107 (355)
|=-.||.+.+. .|+-++.+-..+.+.-
T Consensus 96 f~~~la~~~~~~~~~~~v~~i~~~~~~fi 124 (144)
T cd06845 96 FGGRLAVKCVEQGLPELVRSIAEWTSDFL 124 (144)
T ss_pred HHHHHHHHHHHcCChHHHHHHHHHHHHHH
Confidence 55678888873 3676776665554443
No 18
>PF02338 OTU: OTU-like cysteine protease; InterPro: IPR003323 This is a group of proteins found primarily in viruses, eukaryotes and in the pathogenic bacterium Chlamydia pneumoniae. In viruses they are annotated as replicase or RNA-dependent RNA polymerase. The eukaryotic sequences are related to the Ovarian Tumour (OTU) gene in Drosophila, cezanne deubiquitinating peptidase and tumor necrosis factor, alpha-induced protein 3 (MEROPS peptidase family C64) and otubain 1 and otubain 2 (MEROPS peptidase family C65). None of these proteins has a known biochemical function but low sequence similarity with the polyprotein regions of arteriviruses, and conserved cysteine and histidine, and possibly the aspartate, residues suggests that those not yet recognised as peptidases could possess cysteine protease activity [].; PDB: 2VFJ_C 3DKB_F 3PHW_A 3PHU_B 3PHX_A 3BY4_A 3C0R_C 3PRM_C 3PRP_C 3ZRH_A ....
Probab=24.14 E-value=1.1e+02 Score=24.52 Aligned_cols=33 Identities=15% Similarity=0.363 Sum_probs=28.4
Q ss_pred CCccchHHHHHHHHhh----hCCcchhhHHHHHHHHhh
Q 018469 75 IDSRLCFYDVLADHYV----RMPESGQRILDLIVQLWS 108 (355)
Q Consensus 75 ~~~~~cfY~vLA~yy~----~vPe~~~~~l~L~~qLws 108 (355)
+||. |+|.-+|+-.. ...+..+.|+..|++--.
T Consensus 2 gDGn-ClF~Avs~~l~~~~~~~~~~~~~lR~~~~~~l~ 38 (121)
T PF02338_consen 2 GDGN-CLFRAVSDQLYGDGGGSEDNHQELRKAVVDYLR 38 (121)
T ss_dssp SSTT-HHHHHHHHHHCTT-SSSTTTHHHHHHHHHHHHH
T ss_pred CCcc-HHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHH
Confidence 5677 99999999999 888999999999976654
No 19
>PRK02866 cyanate hydratase; Validated
Probab=22.75 E-value=1.7e+02 Score=26.64 Aligned_cols=47 Identities=21% Similarity=0.318 Sum_probs=29.0
Q ss_pred hhchHHHHhhhcCCCCCCCCcccCCCccch-HHHHHHHHhhhCCcchhhHHHHHH
Q 018469 51 EVDDRARDIILSGEEGGICPAEDGIDSRLC-FYDVLADHYVRMPESGQRILDLIV 104 (355)
Q Consensus 51 ~vDdra~~~i~~~~~d~Is~~~~~~~~~~c-fY~vLA~yy~~vPe~~~~~l~L~~ 104 (355)
.+|+.+..++..--.-+..+..--.|+-+| |||++..| |..+-.||+
T Consensus 58 gL~~~~~~~l~~~P~rg~~~~~~ptdP~iYR~yE~v~vY-------G~~~K~~i~ 105 (147)
T PRK02866 58 GLDEDAVALLQEVPYRGSLPPAVPTDPLIYRFYEMVQVY-------GTTLKALIH 105 (147)
T ss_pred CCCHHHHHHHhcCCcCCCCCCCCCCCcHHHHHHHHHHHh-------hHHHHHHHH
Confidence 788887776654433332222233477888 99999988 455555554
No 20
>TIGR02573 LcrG_PcrG type III secretion protein LcrG. This protein is found in type III secretion operons, along with LcrR, H and V. Also known as PcrG in Pseudomonas, the protein is believed to make a 1:1 complex with PcrV (LcrV). Mutants of LcrG cause premature secretion of effector proteins into the medium.
Probab=22.05 E-value=1.1e+02 Score=26.16 Aligned_cols=38 Identities=21% Similarity=0.427 Sum_probs=28.5
Q ss_pred HHHHHHHHhcCchhHHHHHHHHHhhhhhhhchHHHHhhhc
Q 018469 23 IEKKLQRALASPSQRRNLLQELFADIALEVDDRARDIILS 62 (355)
Q Consensus 23 i~kkL~~Al~s~~qr~~ll~eLFadial~vDdra~~~i~~ 62 (355)
+...-..||+.+.+|..|++|+.+++.+ -+.+-+.|++
T Consensus 7 tl~~AElAI~dsd~R~~llqEm~~gLgl--~p~ag~~Lf~ 44 (90)
T TIGR02573 7 TLQAAELAIRDSDERNDLLQEMWQGLGL--GPVAGEVLFG 44 (90)
T ss_pred HHHHHHHHHhchHHHHHHHHHHHHHcCC--ChHHHHHHHc
Confidence 3345578999999999999999998764 3455555555
No 21
>PF12464 Mac: Maltose acetyltransferase ; InterPro: IPR024688 Maltose acetyltransferase uses acetyl-CoA as acetyl donor to acetylate cytoplasmic maltose [], while galactoside acetyltransferase act on galactosides. ; GO: 0016407 acetyltransferase activity; PDB: 3V4E_A 4EGG_E 4DCL_A 3FTT_A 1KRR_B 1KRU_A 1KRV_C 1KQA_A 3NZ2_J 3ECT_A ....
Probab=21.41 E-value=91 Score=22.38 Aligned_cols=28 Identities=25% Similarity=0.622 Sum_probs=18.2
Q ss_pred HHHHHHHHHHhc-CchhHHHHHHHHHhhh
Q 018469 21 QEIEKKLQRALA-SPSQRRNLLQELFADI 48 (355)
Q Consensus 21 ~ei~kkL~~Al~-s~~qr~~ll~eLFadi 48 (355)
++...+.+..-. ...+|.+||++||..+
T Consensus 25 ~~l~~~~N~~~~~d~~~r~~llk~l~g~~ 53 (55)
T PF12464_consen 25 KRLLQRYNQTPPEDPEERQELLKELFGSV 53 (55)
T ss_dssp HHHHHHHHHSHTTTHHHHHHHHHHHSSBE
T ss_pred HHHHHHHHcCCCCCHHHHHHHHHHHhhhc
Confidence 333444444333 4599999999999754
No 22
>cd03562 CID CID (CTD-Interacting Domain) domain family; CID is present in several RNA-processing factors such as Pcf11 and Nrd1. Pcf11 is a conserved and essential subunit of the yeast cleavage factor IA, which is required for polyadenylation-dependent 3'-RNA processing and transcription termination. Nrd1 is implicated in polyadenylation-independent 3'-RNA processing. CID binds tightly to the carboxy-terminal domain (CTD) of RNA polymerase (Pol) II. During transcription, Pol II synthesizes eukaryotic messenger RNA. Transcription is coupled to RNA processing through the CTD, which consists of up to 52 repeats of the sequence Tyr 1-Ser 2-Pro 3-Thr 4-Ser 5-Pro 6-Ser 7. CID contains eight alpha-helices in a right-handed superhelical arrangement, which closely resembles that of the VHS domains and ARM (Armadillo) repeat proteins, except for its two amino-terminal helices.
Probab=20.77 E-value=2.7e+02 Score=22.51 Aligned_cols=80 Identities=21% Similarity=0.430 Sum_probs=52.2
Q ss_pred hHHHHHHHHHHHHHHHHhcCchhHHHHHHHHHhhhhhhhchHHHHhhhcCCCCCCCCcccCCCccchHHHHHHHHhhhCC
Q 018469 14 AYLNALTQEIEKKLQRALASPSQRRNLLQELFADIALEVDDRARDIILSGEEGGICPAEDGIDSRLCFYDVLADHYVRMP 93 (355)
Q Consensus 14 ~~~~~L~~ei~kkL~~Al~s~~qr~~ll~eLFadial~vDdra~~~i~~~~~d~Is~~~~~~~~~~cfY~vLA~yy~~vP 93 (355)
.+-..+..-|++.++++ .+.|+..++ -|-+||...+..++..... ..+..++.+=|..+|
T Consensus 33 ~~a~~iv~~i~~~i~~~--~~~~KL~~L-YL~dsIvkn~~~~~~~~~~-----------------~~~~~~f~~~~~~~~ 92 (114)
T cd03562 33 KHAKEIVEIIEKHIKKC--PPEQKLPLL-YLLDSIVKNVGRKYKEFFS-----------------EFLVPLFLDAYEKVD 92 (114)
T ss_pred HHHHHHHHHHHHHHHhC--CcccchHHH-HHHHHHHHHcccchHHHHH-----------------HHHHHHHHHHHHhCC
Confidence 34445556666666655 445665544 4667777666665554221 134777888888999
Q ss_pred cchhhHHHHHHHHhhhhhHH
Q 018469 94 ESGQRILDLIVQLWSQLFVS 113 (355)
Q Consensus 94 e~~~~~l~L~~qLwsq~~~~ 113 (355)
++.+.=+.=+...|.+...+
T Consensus 93 ~~~r~kl~rl~~iW~~~~~f 112 (114)
T cd03562 93 EKTRKKLERLLNIWEERFVF 112 (114)
T ss_pred HHHHHHHHHHHHHccCCCCC
Confidence 99998888888999887543
Done!