Query 018469
Match_columns 355
No_of_seqs 22 out of 24
Neff 2.9
Searched_HMMs 29240
Date Mon Mar 25 15:45:41 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/018469.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/018469hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 2imu_A Structural polyprotein 34.9 18 0.0006 26.4 1.7 20 283-302 8-27 (46)
2 2qsb_A UPF0147 protein TA0600; 34.1 21 0.00073 29.1 2.3 42 260-301 7-48 (89)
3 2qzg_A Conserved uncharacteriz 30.9 26 0.0009 28.8 2.4 42 260-301 11-52 (94)
4 3b2a_A TON_1937, putative unch 29.6 90 0.0031 29.7 6.1 78 232-315 81-160 (265)
5 3n1e_A Vacuolar protein sortin 26.9 1.6E+02 0.0054 25.2 6.7 49 9-58 47-98 (141)
6 3dcm_X AdoMet, uncharacterized 25.3 37 0.0012 30.4 2.5 42 254-298 143-185 (192)
7 2j96_A Phycoerythrocyanin alph 22.2 46 0.0016 28.7 2.4 21 264-284 58-78 (162)
8 3o18_A C-phycocyanin alpha sub 20.7 44 0.0015 28.9 2.0 23 271-293 65-88 (162)
9 1dw9_A Cyanate lyase; cyanate 18.9 81 0.0028 27.6 3.3 39 50-88 65-104 (156)
10 1kn1_B Allophycocyanin; helix- 18.8 56 0.0019 28.1 2.3 21 272-293 65-85 (161)
No 1
>2imu_A Structural polyprotein (PP) P1; IBDV, birnavirus, DPC, VP2, pore formation, viral protein; NMR {Synthetic}
Probab=34.86 E-value=18 Score=26.44 Aligned_cols=20 Identities=35% Similarity=0.468 Sum_probs=17.7
Q ss_pred hHHHHHHHHhhhhhcCCCCc
Q 018469 283 RAVRHAAWDALDFLFPVGQY 302 (355)
Q Consensus 283 R~VR~aA~~~LD~LFP~Gr~ 302 (355)
|++|+.|.-++|-|||.-+=
T Consensus 8 r~irr~a~PVvsTlfP~Aap 27 (46)
T 2imu_A 8 RAIRRIAVPVVSTLFPPAAP 27 (46)
T ss_dssp HHHHHHSHHHHHHHCSSTTH
T ss_pred HHHHHhhhhhhhccCCCcch
Confidence 78999999999999997653
No 2
>2qsb_A UPF0147 protein TA0600; structural genomics, four-helix bundle, PSI-2, protein structure initiative; HET: MSE; 1.30A {Thermoplasma acidophilum dsm 1728} SCOP: a.29.14.1
Probab=34.08 E-value=21 Score=29.06 Aligned_cols=42 Identities=14% Similarity=0.156 Sum_probs=33.2
Q ss_pred hhHHHHHHhhhcccCCCCCCCCChHHHHHHHHhhhhhcCCCC
Q 018469 260 TTSTRLKTCLYSFTSPGGPMYPTRAVRHAAWDALDFLFPVGQ 301 (355)
Q Consensus 260 tT~~rLqacLYSfTsPGgP~Y~~R~VR~aA~~~LD~LFP~Gr 301 (355)
.+..++|.|++=+..=-.=.=.||-+|+||-++.+.|.=.+.
T Consensus 7 ~~e~~ik~~~~~L~~I~~D~sVPRNIRraA~ea~~~L~~e~~ 48 (89)
T 2qsb_A 7 VDQNLFNEVMYLLDELSQDITVPKNVRKVAQDSKAKLSQENE 48 (89)
T ss_dssp HHHHHHHHHHHHHHHHHTCTTSCHHHHHHHHHHHHHHTCTTS
T ss_pred ccHHHHHHHHHHHHHHHcCCCCChHHHHHHHHHHHHHhCCCc
Confidence 345678888887766666667899999999999999987554
No 3
>2qzg_A Conserved uncharacterized archaeal protein; unknown function protein, structu genomics, PSI-2, protein structure initiative; 2.09A {Methanococcus maripaludis S2} SCOP: a.29.14.1
Probab=30.92 E-value=26 Score=28.77 Aligned_cols=42 Identities=21% Similarity=0.109 Sum_probs=33.3
Q ss_pred hhHHHHHHhhhcccCCCCCCCCChHHHHHHHHhhhhhcCCCC
Q 018469 260 TTSTRLKTCLYSFTSPGGPMYPTRAVRHAAWDALDFLFPVGQ 301 (355)
Q Consensus 260 tT~~rLqacLYSfTsPGgP~Y~~R~VR~aA~~~LD~LFP~Gr 301 (355)
.+..++|.|++=+..--.=.=+||-+|+||-++.+.|.=.+.
T Consensus 11 e~e~~ik~~~~~L~~I~~D~sVPRNIRraA~ea~~~L~~e~~ 52 (94)
T 2qzg_A 11 SPADKLKNISSMLEEIVEDTTVPRNIRAAADNAKNALHNEEQ 52 (94)
T ss_dssp CHHHHHHHHHHHHHHHHTCTTSCHHHHHHHHHHHHHTTCTTS
T ss_pred chHHHHHHHHHHHHHHHcCCCCChHHHHHHHHHHHHHhCCCc
Confidence 345678888887766666667899999999999999987554
No 4
>3b2a_A TON_1937, putative uncharacterized protein; heat-repeats, hypothetical, unknown function; 2.20A {Thermococcus onnurineus}
Probab=29.62 E-value=90 Score=29.69 Aligned_cols=78 Identities=19% Similarity=0.161 Sum_probs=64.0
Q ss_pred ehhccc-chhHHHHHHHHhhhh-cCccccchhHHHHHHhhhcccCCCCCCCCChHHHHHHHHhhhhhcCCCCccHHHHHH
Q 018469 232 IEVADQ-VEPVLLHYLSQIKVL-QGMELRMTTSTRLKTCLYSFTSPGGPMYPTRAVRHAAWDALDFLFPVGQYPRHVISL 309 (355)
Q Consensus 232 ~El~dq-vE~vLlhYL~~~~~l-kg~eL~~tT~~rLqacLYSfTsPGgP~Y~~R~VR~aA~~~LD~LFP~Gr~~Rh~VsL 309 (355)
++++.+ .|-|.++=+.-++.+ .|.++..-|=.|+-..|=+.-+-|.| .+|-.|-++|+.| ++-..+|.++++
T Consensus 81 I~llk~~dEkval~A~r~L~~LLe~vpL~~~~y~Kl~~aL~dlik~~~~-----il~~eaae~Lgkl-kv~~~~~~V~~~ 154 (265)
T 3b2a_A 81 INALSQENEKVTIKALRALGYLVKDVPMGSKTFLKAAKTLVSLLESPDD-----MMRIETIDVLSKL-QPLEDSKLVRTY 154 (265)
T ss_dssp HHTCCSTTHHHHHHHHHHHHHHHTTCCBCHHHHHHHHHHHHHHTTSCCH-----HHHHHHHHHHHHC-CBSCCCHHHHHH
T ss_pred HHHHhccchhHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHHhcCCCc-----hHHHHHHHHhCcC-CcccchHHHHHH
Confidence 344544 888998877777766 88999999999999998877664332 4889999999999 888889999999
Q ss_pred HHHhhc
Q 018469 310 FFRLLY 315 (355)
Q Consensus 310 fFRLLh 315 (355)
.|||++
T Consensus 155 l~sLl~ 160 (265)
T 3b2a_A 155 INELVV 160 (265)
T ss_dssp HHHHHT
T ss_pred HHHHHh
Confidence 999996
No 5
>3n1e_A Vacuolar protein sorting-associated protein 54; spinal muscular atrophy, vesicle trafficking, golgi apparatu tethering complex, GARP.; 1.70A {Mus musculus} PDB: 3n1b_A
Probab=26.95 E-value=1.6e+02 Score=25.24 Aligned_cols=49 Identities=14% Similarity=0.234 Sum_probs=41.0
Q ss_pred CCCCchHHHHHHHHHHHHHHHHhc---CchhHHHHHHHHHhhhhhhhchHHHH
Q 018469 9 THRGSAYLNALTQEIEKKLQRALA---SPSQRRNLLQELFADIALEVDDRARD 58 (355)
Q Consensus 9 ~~~~s~~~~~L~~ei~kkL~~Al~---s~~qr~~ll~eLFadial~vDdra~~ 58 (355)
++-.|.|.+.|++|+- |||+||. .++|=+.|...+|+...-.+.+..++
T Consensus 47 ~pvpS~~m~tl~Ke~~-kLH~~Ls~~LP~~~v~~Im~~Vf~~fk~~l~~~~~~ 98 (141)
T 3n1e_A 47 APVPSPCFRNICKQMT-KMHEAIFDLLPEEQTQMLFLRINASYKLHLKKQLSH 98 (141)
T ss_dssp SSSSCHHHHHHHHHHH-HHHHHHTTTSCHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred CCCCCHHHHHHHHHHH-HHHHHHHhhCCHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4567899999999985 7999999 55899999999999888777776665
No 6
>3dcm_X AdoMet, uncharacterized protein TM_1570; trefoil knot, spout mtase, adoMet binding, transferase; HET: SAM; 2.00A {Thermotoga maritima}
Probab=25.31 E-value=37 Score=30.42 Aligned_cols=42 Identities=24% Similarity=0.165 Sum_probs=37.0
Q ss_pred CccccchhHHHHHHhhhcc-cCCCCCCCCChHHHHHHHHhhhhhcC
Q 018469 254 GMELRMTTSTRLKTCLYSF-TSPGGPMYPTRAVRHAAWDALDFLFP 298 (355)
Q Consensus 254 g~eL~~tT~~rLqacLYSf-TsPGgP~Y~~R~VR~aA~~~LD~LFP 298 (355)
|++|.. .-|+.|=|-. +-||.|-|+-=.||+|+-=.||.||=
T Consensus 143 ~~GLtn---eel~~cd~~l~~Ip~~~eY~~Lnl~~AVaIiLdrl~g 185 (192)
T 3dcm_X 143 GWGLPD---EILEISDYVLEPIRAQSDFNHLSVRAAAAIIIDRLIG 185 (192)
T ss_dssp TTCCCH---HHHTTCSEEBCCTTTTSSCCCCCHHHHHHHHHHHHTT
T ss_pred CCCCCH---HHHHhcCEEEccCCCCCCCCccCHHHHHHHHHHHHcC
Confidence 456655 7899998888 89999999999999999999999984
No 7
>2j96_A Phycoerythrocyanin alpha chain; electron transport, Z- to E-isomerization, transport, chromophore, bIle pigment, phycobilisome; HET: PVN; 2.25A {Mastigocladus laminosus} PDB: 2c7k_A* 2c7j_A* 2c7l_A*
Probab=22.22 E-value=46 Score=28.71 Aligned_cols=21 Identities=19% Similarity=0.232 Sum_probs=15.4
Q ss_pred HHHHhhhcccCCCCCCCCChH
Q 018469 264 RLKTCLYSFTSPGGPMYPTRA 284 (355)
Q Consensus 264 rLqacLYSfTsPGgP~Y~~R~ 284 (355)
++....=..|+|||++|++|.
T Consensus 58 ~l~~~~P~l~~~ggn~y~~~~ 78 (162)
T 2j96_A 58 HVYQKFPYTTQMQGPQYASTP 78 (162)
T ss_dssp HHHHHSGGGTSSCSSSSCCSH
T ss_pred HHHHHCcCccCCCCCCCccch
Confidence 333334457999999999988
No 8
>3o18_A C-phycocyanin alpha subunit; phycobilisome, photosynthesis, light harvesting, cyanobacter; HET: CYC; 1.35A {Thermosynechococcus vulcanus} SCOP: a.1.1.3 PDB: 1i7y_A* 1on7_A* 1ktp_A* 3o2c_A* 3l0f_A* 1jbo_A* 3kvs_A* 3brp_A* 1phn_A* 2bv8_A* 1f99_A* 1gh0_A* 2uum_A* 1ha7_A* 1cpc_A* 2uul_C* 2uul_A* 2uun_A*
Probab=20.66 E-value=44 Score=28.87 Aligned_cols=23 Identities=13% Similarity=0.160 Sum_probs=15.8
Q ss_pred cccCCCCCCCCChHH-HHHHHHhh
Q 018469 271 SFTSPGGPMYPTRAV-RHAAWDAL 293 (355)
Q Consensus 271 SfTsPGgP~Y~~R~V-R~aA~~~L 293 (355)
..|+|||+.|++|.- ..|.|.=+
T Consensus 65 ~l~~~gG~~y~~~~~~~~~C~RD~ 88 (162)
T 3o18_A 65 YTTTMQGSQYASTPEGKAKCARDI 88 (162)
T ss_dssp GGGTSCSTTSSSSHHHHHHHHHHH
T ss_pred CccCCCCCCCcchhHHHHHHHHHH
Confidence 378999999999764 23444433
No 9
>1dw9_A Cyanate lyase; cyanate degradation, structural genomics, PSI, protei structure initiative, midwest center for structural genomic; HET: SO4; 1.65A {Escherichia coli} SCOP: a.35.1.4 d.72.1.1 PDB: 1dwk_A* 2ivq_A 2ivb_A 2iu7_A 2iv1_A 2iuo_A 2ivg_A
Probab=18.90 E-value=81 Score=27.59 Aligned_cols=39 Identities=18% Similarity=0.232 Sum_probs=23.2
Q ss_pred hhhchHHHHhhhcCCCCCCCCcccCCCccch-HHHHHHHH
Q 018469 50 LEVDDRARDIILSGEEGGICPAEDGIDSRLC-FYDVLADH 88 (355)
Q Consensus 50 l~vDdra~~~i~~~~~d~Is~~~~~~~~~~c-fY~vLA~y 88 (355)
+.+|+.+..++...-.-+-.+..--.|+-|| |||++-.|
T Consensus 65 LgL~~e~~~~l~~~P~rg~~~~~~ptdP~iYR~yE~v~vY 104 (156)
T 1dw9_A 65 LDLDEDSILLLQMIPLRGCIDDRIPTDPTMYRFYEMLQVY 104 (156)
T ss_dssp TTCCHHHHHHTTSBCCCCCCSSSSCCSHHHHHHHHHHHHH
T ss_pred hCcCHHHHHHHhcCCcCCCCCCCCCCCCeehhHHHHHHHh
Confidence 4677777665543322222222233467888 99999888
No 10
>1kn1_B Allophycocyanin; helix-turn-helix, electron transport; HET: CYC; 2.20A {Porphyra yezoensis} SCOP: a.1.1.3 PDB: 1all_B* 3dbj_B* 2v8a_B* 1b33_B* 2vjt_B*
Probab=18.82 E-value=56 Score=28.07 Aligned_cols=21 Identities=48% Similarity=0.697 Sum_probs=15.4
Q ss_pred ccCCCCCCCCChHHHHHHHHhh
Q 018469 272 FTSPGGPMYPTRAVRHAAWDAL 293 (355)
Q Consensus 272 fTsPGgP~Y~~R~VR~aA~~~L 293 (355)
+++|||.+|++|. ..|.++=+
T Consensus 65 l~~pgg~~y~~~r-~~~ClRD~ 85 (161)
T 1kn1_B 65 ITRPGGNMYTTRR-YAACIRDL 85 (161)
T ss_dssp GGSTTSTTCSHHH-HHHHHHHH
T ss_pred ccCCCCCCccHHH-HHHHHHHH
Confidence 6899999999988 44444433
Done!