Query 018469
Match_columns 355
No_of_seqs 22 out of 24
Neff 2.9
Searched_HMMs 13730
Date Mon Mar 25 15:45:48 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/018469.a3m -d /work/01045/syshi/HHdatabase/scop70.hhm -o /work/01045/syshi/hhsearch_scop/018469hhsearch_scop -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 d2qzga1 a.29.14.1 (A:4-91) Unc 34.5 8 0.00058 29.5 1.8 43 259-301 4-46 (88)
2 d1bjfa_ a.39.1.5 (A:) Neurocal 27.2 1E+02 0.0076 22.7 7.4 73 18-90 3-87 (181)
3 d1pjqa3 e.37.1.1 (A:114-215) S 26.4 55 0.004 23.9 5.4 35 13-47 38-72 (102)
4 d2qsba1 a.29.14.1 (A:2-86) Unc 25.2 13 0.00093 28.2 1.5 40 262-301 5-44 (85)
5 d1cjxa2 d.32.1.3 (A:154-356) 4 22.4 24 0.0017 28.8 2.8 50 47-102 87-138 (203)
6 d1cb8a1 a.102.3.2 (A:26-335) C 20.2 42 0.003 29.3 4.1 56 263-335 58-113 (310)
7 d1jbob_ a.1.1.3 (B:) Phycocyan 18.3 25 0.0018 28.9 2.1 22 271-293 65-86 (172)
8 d2cyya2 d.58.4.2 (A:65-150) Pu 16.7 54 0.0039 22.3 3.3 49 206-255 18-66 (86)
9 d1allb_ a.1.1.3 (B:) Allophyco 16.5 32 0.0023 27.7 2.2 22 271-293 64-85 (161)
10 d1wlza1 a.39.1.7 (A:229-311) D 16.1 95 0.007 20.6 4.5 65 21-88 5-82 (83)
No 1
>d2qzga1 a.29.14.1 (A:4-91) Uncharacterized protein MMP1188 {Methanococcus maripaludis [TaxId: 39152]}
Probab=34.49 E-value=8 Score=29.47 Aligned_cols=43 Identities=21% Similarity=0.129 Sum_probs=33.3
Q ss_pred chhHHHHHHhhhcccCCCCCCCCChHHHHHHHHhhhhhcCCCC
Q 018469 259 MTTSTRLKTCLYSFTSPGGPMYPTRAVRHAAWDALDFLFPVGQ 301 (355)
Q Consensus 259 ~tT~~rLqacLYSfTsPGgP~Y~~R~VR~aA~~~LD~LFP~Gr 301 (355)
+.+..|+|.|.+=+..=-.=.=+||-||++|-++.+.|-=.++
T Consensus 4 ~~~~e~i~~~~~~L~qI~~D~sVPRNIRr~a~~~~~~L~n~~~ 46 (88)
T d2qzga1 4 LSPADKLKNISSMLEEIVEDTTVPRNIRAAADNAKNALHNEEQ 46 (88)
T ss_dssp CCHHHHHHHHHHHHHHHHTCTTSCHHHHHHHHHHHHHTTCTTS
T ss_pred CCHHHHHHHHHHHHHHHhcCCCCChHHHHHHHHHHHHHHCCCc
Confidence 4567789999887777645556899999999999998865443
No 2
>d1bjfa_ a.39.1.5 (A:) Neurocalcin {Cow (Bos taurus) [TaxId: 9913]}
Probab=27.22 E-value=1e+02 Score=22.66 Aligned_cols=73 Identities=12% Similarity=-0.017 Sum_probs=45.5
Q ss_pred HHHHHHHHHHHHHhcCchhHHHHHHHHHhhh--hhhhchHHH-HhhhcCCCCCCC-C--------cccCCCccchHHHHH
Q 018469 18 ALTQEIEKKLQRALASPSQRRNLLQELFADI--ALEVDDRAR-DIILSGEEGGIC-P--------AEDGIDSRLCFYDVL 85 (355)
Q Consensus 18 ~L~~ei~kkL~~Al~s~~qr~~ll~eLFadi--al~vDdra~-~~i~~~~~d~Is-~--------~~~~~~~~~cfY~vL 85 (355)
+|+.|+.++|.+......+.-+-+.+.|.|. ...++...- +.+........+ + -+.+++|.+.|.+-+
T Consensus 3 ~l~~~~~~~L~~~t~fs~~ei~~l~~~F~~~~~~g~i~~~ef~~~l~~~~~~~~~~~~~~~lf~~~d~~~~g~i~~~eFl 82 (181)
T d1bjfa_ 3 KLRPEVMQDLLESTDFTEHEIQEWYKGFLRDCPSGHLSMEEFKKIYGNFFPYGDASKFAEHVFRTFDANGDGTIDFREFI 82 (181)
T ss_dssp CCCHHHHHHHHHHSSCCHHHHHHHHHHHHHHSTTSEEEHHHHHHHHTTTSSSSCCHHHHHHHHHHHCSSCSSEEEHHHHH
T ss_pred CCCHHHHHHHHHhcCCCHHHHHHHHHHHHhhCCCCCcCHHHHHHHHHHhCCCCCHHHHHHHHHHhcCCCCCCcEeHHHHH
Confidence 4678899999999997766677777777665 444554432 333322222211 1 167778888888877
Q ss_pred HHHhh
Q 018469 86 ADHYV 90 (355)
Q Consensus 86 A~yy~ 90 (355)
+---.
T Consensus 83 ~~~~~ 87 (181)
T d1bjfa_ 83 IALSV 87 (181)
T ss_dssp HHHHH
T ss_pred HHHHH
Confidence 65444
No 3
>d1pjqa3 e.37.1.1 (A:114-215) Siroheme synthase CysG, domains 2 and 3 {Salmonella typhimurium [TaxId: 90371]}
Probab=26.44 E-value=55 Score=23.93 Aligned_cols=35 Identities=11% Similarity=0.392 Sum_probs=26.4
Q ss_pred chHHHHHHHHHHHHHHHHhcCchhHHHHHHHHHhh
Q 018469 13 SAYLNALTQEIEKKLQRALASPSQRRNLLQELFAD 47 (355)
Q Consensus 13 s~~~~~L~~ei~kkL~~Al~s~~qr~~ll~eLFad 47 (355)
-.-+-.+..+...++...+.+..+|+.+++++|.|
T Consensus 38 ~~~l~~~~~~~R~~vk~~~~~~~~Rr~fw~~~~~~ 72 (102)
T d1pjqa3 38 LGQVARYAGQLRARVKKQFATMGERRRFWEKFFVN 72 (102)
T ss_dssp HHHHHHHHHHHHHHHHHHCCSHHHHHHHHHHHTTC
T ss_pred HHHHHHHHHHHHHHHHHHCCChHHHHHHHHHHHcC
Confidence 34445556666777777788889999999999865
No 4
>d2qsba1 a.29.14.1 (A:2-86) Uncharacterized protein Ta0600 {Thermoplasma acidophilum [TaxId: 2303]}
Probab=25.21 E-value=13 Score=28.15 Aligned_cols=40 Identities=15% Similarity=0.164 Sum_probs=30.0
Q ss_pred HHHHHHhhhcccCCCCCCCCChHHHHHHHHhhhhhcCCCC
Q 018469 262 STRLKTCLYSFTSPGGPMYPTRAVRHAAWDALDFLFPVGQ 301 (355)
Q Consensus 262 ~~rLqacLYSfTsPGgP~Y~~R~VR~aA~~~LD~LFP~Gr 301 (355)
..+||.|.+=+..=-.=.=+||-||++|-++.+.|-=.++
T Consensus 5 e~~l~~~~~~L~~I~~D~sVPRNIRr~a~e~~~~L~n~~~ 44 (85)
T d2qsba1 5 QNLFNEVMYLLDELSQDITVPKNVRKVAQDSKAKLSQENE 44 (85)
T ss_dssp HHHHHHHHHHHHHHHTCTTSCHHHHHHHHHHHHHHTCTTS
T ss_pred HHHHHHHHHHHHHHhcCCCCChHHHHHHHHHHHHHHCCCc
Confidence 3567888777766544455899999999999999865444
No 5
>d1cjxa2 d.32.1.3 (A:154-356) 4-hydroxyphenylpyruvate dioxygenase, HppD {Pseudomonas fluorescens [TaxId: 294]}
Probab=22.40 E-value=24 Score=28.83 Aligned_cols=50 Identities=14% Similarity=0.177 Sum_probs=31.1
Q ss_pred hhhhhhchHHHH--hhhcCCCCCCCCcccCCCccchHHHHHHHHhhhCCcchhhHHHH
Q 018469 47 DIALEVDDRARD--IILSGEEGGICPAEDGIDSRLCFYDVLADHYVRMPESGQRILDL 102 (355)
Q Consensus 47 dial~vDdra~~--~i~~~~~d~Is~~~~~~~~~~cfY~vLA~yy~~vPe~~~~~l~L 102 (355)
=||+.|||=... .+.+. ++...+. ++-+||+.|+..+...++..+++..+
T Consensus 87 HIAf~vdDI~aav~~L~~~---Gv~fL~~---pp~~Yy~~l~~~~~~~~~~~~~l~~~ 138 (203)
T d1cjxa2 87 HVAFLTDDLVKTWDALKKI---GMRFMTA---PPDTYYEMLEGRLPDHGEPVDQLQAR 138 (203)
T ss_dssp EEEEEESCHHHHHHHHHHT---TCCBCCC---CCHHHHHTHHHHSTTCCCCHHHHHHH
T ss_pred eEEEEeCCHHHHHHHHHhc---CCccccC---chhhHHHHHHHhhccccchHHHHHHc
Confidence 478888876432 33332 3322211 24599999998888888777776653
No 6
>d1cb8a1 a.102.3.2 (A:26-335) Chondroitinase AC {Pedobacter heparinus (Flavobacterium heparinum) [TaxId: 984]}
Probab=20.15 E-value=42 Score=29.28 Aligned_cols=56 Identities=13% Similarity=0.178 Sum_probs=42.6
Q ss_pred HHHHHhhhcccCCCCCCCCChHHHHHHHHhhhhhcCCCCccHHHHHHHHHhhcccCCcchhHHHHHHHHHHHH
Q 018469 263 TRLKTCLYSFTSPGGPMYPTRAVRHAAWDALDFLFPVGQYPRHVISLFFRLLYPWCWPSSCWNFIMSWLKAVL 335 (355)
Q Consensus 263 ~rLqacLYSfTsPGgP~Y~~R~VR~aA~~~LD~LFP~Gr~~Rh~VsLfFRLLhPyywp~S~wn~i~~~ik~v~ 335 (355)
.||+.=-..++.||++-|.-..|+.+--++||.++... ++.+.-|+|-|-+=+++-
T Consensus 58 ~rl~~mA~AY~~pgs~ly~d~~l~~~I~~al~~~~~~~-----------------~~~~NWW~~eIG~P~~l~ 113 (310)
T d1cb8a1 58 LQLETIIQAYIEKDSHYYGDDKVFDQISKAFKYWYDSD-----------------PKSRNWWHNEIATPQALG 113 (310)
T ss_dssp HHHHHHHHHHHCTTSTTTTCHHHHHHHHHHHHHHHHHC-----------------CCCSSHHHHHTHHHHHHH
T ss_pred HHHHHHHHHHhCCCCcccCCHHHHHHHHHHHHHHHhCC-----------------CCCCCchHHhcccHHHHH
Confidence 45555555567999999999999999999999875422 355778999887765543
No 7
>d1jbob_ a.1.1.3 (B:) Phycocyanin beta subunit {Synechococcus elongatus [TaxId: 32046]}
Probab=18.31 E-value=25 Score=28.89 Aligned_cols=22 Identities=27% Similarity=0.587 Sum_probs=15.1
Q ss_pred cccCCCCCCCCChHHHHHHHHhh
Q 018469 271 SFTSPGGPMYPTRAVRHAAWDAL 293 (355)
Q Consensus 271 SfTsPGgP~Y~~R~VR~aA~~~L 293 (355)
..|+|||+.|+||.- .|.|+=+
T Consensus 65 ~l~~~GG~~y~~~r~-~aC~RD~ 86 (172)
T d1jbob_ 65 QLIQPGGNAYTNRRM-AACLRDM 86 (172)
T ss_dssp GGTSTTSTTCSHHHH-HHHHHHH
T ss_pred CccCCCCCCchHHHH-HHHHHHH
Confidence 379999999998743 2444433
No 8
>d2cyya2 d.58.4.2 (A:65-150) Putative transcriptional regulator PH1519 {Archaeon Pyrococcus horikoshii [TaxId: 53953]}
Probab=16.70 E-value=54 Score=22.32 Aligned_cols=49 Identities=22% Similarity=0.369 Sum_probs=31.0
Q ss_pred hHHHHHhhCCCCCCcccccCCCceeeehhcccchhHHHHHHHHhhhhcCc
Q 018469 206 KLESFLKQFPVFPNAFLVGGSADFFVIEVADQVEPVLLHYLSQIKVLQGM 255 (355)
Q Consensus 206 ~l~~fl~~fp~~pn~~l~gg~aD~fV~El~dqvE~vLlhYL~~~~~lkg~ 255 (355)
.+...++++|..-....+.|..|+++.=.+.+.++ |-.+++++.-+.|.
T Consensus 18 ~v~~~l~~~peV~~~~~~tG~~D~~~~v~~~~~~~-l~~~~~~l~~~~gV 66 (86)
T d2cyya2 18 EVASNLAKYPEIVEVYETTGDYDMVVKIRTKNSEE-LNNFLDLIGSIPGV 66 (86)
T ss_dssp HHHHHHHTCTTEEEEEECSSSSSEEEEEEESSHHH-HHHHHHHHHTSTTE
T ss_pred HHHHHHHCCCCeEEEEEEcCCCCEEEEEEECCHHH-HHHHHHHHhCCCCE
Confidence 34444555555444556778899999888877554 35556666665553
No 9
>d1allb_ a.1.1.3 (B:) Allophycocyanin beta subunit {Spirulina platensis [TaxId: 118562]}
Probab=16.48 E-value=32 Score=27.70 Aligned_cols=22 Identities=45% Similarity=0.670 Sum_probs=15.6
Q ss_pred cccCCCCCCCCChHHHHHHHHhh
Q 018469 271 SFTSPGGPMYPTRAVRHAAWDAL 293 (355)
Q Consensus 271 SfTsPGgP~Y~~R~VR~aA~~~L 293 (355)
..|.|||..|++|.- .|.|+=+
T Consensus 64 ~~~~pgG~~y~~~r~-~aC~RD~ 85 (161)
T d1allb_ 64 DVTRPGGNMYTTRRY-AACIRDL 85 (161)
T ss_dssp TTTSTTSTTCSHHHH-HHHHHHH
T ss_pred hccCCCCCCCChHHH-HHHHHHH
Confidence 378999999998863 4444433
No 10
>d1wlza1 a.39.1.7 (A:229-311) DJ-1-binding protein, DJBP {Human (Homo sapiens) [TaxId: 9606]}
Probab=16.15 E-value=95 Score=20.64 Aligned_cols=65 Identities=15% Similarity=0.206 Sum_probs=33.8
Q ss_pred HHHHHHHHHHhcCchhHHHHHHHHHhhh----hhhhchHHHHhhhcCCCCCCCCc---------ccCCCccchHHHHHHH
Q 018469 21 QEIEKKLQRALASPSQRRNLLQELFADI----ALEVDDRARDIILSGEEGGICPA---------EDGIDSRLCFYDVLAD 87 (355)
Q Consensus 21 ~ei~kkL~~Al~s~~qr~~ll~eLFadi----al~vDdra~~~i~~~~~d~Is~~---------~~~~~~~~cfY~vLA~ 87 (355)
+||+.+|+..+.+... =+++.|... .+.|+-..=..++..-+-.+++. +..++|.+.|-+-++.
T Consensus 5 ~ei~~~l~~~i~~~~~---~l~~~F~~~D~~~~G~i~~~ef~~~l~~~~~~l~~~e~~~l~~~~d~~~~g~I~y~eFl~~ 81 (83)
T d1wlza1 5 RDILARLHKAVTSHYH---AITQEFENFDTMKTNTISREEFRAICNRRVQILTDEQFDRLWNEMPVNAKGRLKYPDFLSR 81 (83)
T ss_dssp HHHHHHHHHHHHHTHH---HHHHHHHHHCTTCSSCBCHHHHHHHHHHHTCCCCHHHHHHHHTTSCBCTTSCBCHHHHHHH
T ss_pred HHHHHHHHHHHHHHHH---HHHHHHHHHCCCCCceEChhHHHHHHHHhCCCCChhHHHHHhhccccCCCCcEeHHHHHHH
Confidence 5777888887776432 244566433 33444332222222222222222 5667788888776654
Q ss_pred H
Q 018469 88 H 88 (355)
Q Consensus 88 y 88 (355)
+
T Consensus 82 f 82 (83)
T d1wlza1 82 F 82 (83)
T ss_dssp H
T ss_pred h
Confidence 3
Done!