BLASTP 2.2.26 [Sep-21-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.


Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 018470
         (355 letters)

Database: swissprot 
           539,616 sequences; 191,569,459 total letters

Searching..................................................done



>sp|Q9QXL1|KI21B_MOUSE Kinesin-like protein KIF21B OS=Mus musculus GN=Kif21b PE=1 SV=2
          Length = 1668

 Score = 35.4 bits (80), Expect = 0.59,   Method: Compositional matrix adjust.
 Identities = 29/89 (32%), Positives = 52/89 (58%), Gaps = 6/89 (6%)

Query: 71  KEKSSEIKS-VRKKLKFMKRLSSDLLPLEAFGNEDASSLRNEERISEAVQVLQAQLLQLR 129
           +EK+++IK+   K+L+ M R   DL  L+A   E A  L+N+ R    ++ LQA++ +++
Sbjct: 701 EEKANKIKADYEKRLREMNR---DLQKLQAAQKEHARLLKNQSRYERELKKLQAEVAEMK 757

Query: 130 SEQKELKKMMKEKKAQIKTTMKERKGNRK 158
             +  L K M+E+  Q +  + E K NR+
Sbjct: 758 KAKVALMKQMREE--QQRRRLVETKRNRE 784


>sp|O75037|KI21B_HUMAN Kinesin-like protein KIF21B OS=Homo sapiens GN=KIF21B PE=1 SV=2
          Length = 1637

 Score = 35.4 bits (80), Expect = 0.59,   Method: Compositional matrix adjust.
 Identities = 29/89 (32%), Positives = 52/89 (58%), Gaps = 6/89 (6%)

Query: 71  KEKSSEIKS-VRKKLKFMKRLSSDLLPLEAFGNEDASSLRNEERISEAVQVLQAQLLQLR 129
           +EK+++IK+   K+L+ M R   DL  L+A   E A  L+N+ R    ++ LQA++ +++
Sbjct: 700 EEKANKIKADYEKRLREMNR---DLQKLQAAQKEHARLLKNQSRYERELKKLQAEVAEMK 756

Query: 130 SEQKELKKMMKEKKAQIKTTMKERKGNRK 158
             +  L K M+E+  Q +  + E K NR+
Sbjct: 757 KAKVALMKQMREE--QQRRRLVETKRNRE 783


>sp|O93309|SMC3_XENLA Structural maintenance of chromosomes protein 3 OS=Xenopus laevis
           GN=smc3 PE=1 SV=2
          Length = 1209

 Score = 32.7 bits (73), Expect = 4.6,   Method: Compositional matrix adjust.
 Identities = 27/94 (28%), Positives = 51/94 (54%), Gaps = 12/94 (12%)

Query: 87  MKRLSSDLLPLEAFGNEDASSLRNEERISEAVQVLQAQLLQLRSEQKELK---------- 136
           ++++  +L  LEA  NE+    RN ERI+  +  L  Q+ Q+ ++Q++ K          
Sbjct: 682 VRKVEDELHALEAKLNENLR--RNIERINNEIDQLMNQMQQIETQQRKFKASRDSILSEM 739

Query: 137 KMMKEKKAQIKTTMKERKGNRKSGSSSSSSSESS 170
           KM+KEK+ Q + T   ++ + +S  +S  + ES+
Sbjct: 740 KMLKEKRQQSEKTFMPKQRSLQSLEASLHAMEST 773


  Database: swissprot
    Posted date:  Mar 23, 2013  2:32 AM
  Number of letters in database: 191,569,459
  Number of sequences in database:  539,616
  
Lambda     K      H
   0.314    0.130    0.365 

Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 121,226,974
Number of Sequences: 539616
Number of extensions: 4875426
Number of successful extensions: 30433
Number of sequences better than 100.0: 50
Number of HSP's better than 100.0 without gapping: 140
Number of HSP's successfully gapped in prelim test: 701
Number of HSP's that attempted gapping in prelim test: 27299
Number of HSP's gapped (non-prelim): 2871
length of query: 355
length of database: 191,569,459
effective HSP length: 118
effective length of query: 237
effective length of database: 127,894,771
effective search space: 30311060727
effective search space used: 30311060727
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 42 (22.0 bits)
S2: 62 (28.5 bits)