Query 018470
Match_columns 355
No_of_seqs 180 out of 707
Neff 3.7
Searched_HMMs 29240
Date Mon Mar 25 15:46:35 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/018470.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/018470hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 2auv_A Potential NAD-reducing 99.7 6.5E-19 2.2E-23 137.7 4.1 74 249-341 3-85 (85)
2 1m2d_A [2Fe-2S] ferredoxin; th 99.7 3.4E-18 1.2E-22 139.8 7.8 78 251-345 2-93 (110)
3 3i9v_2 NADH-quinone oxidoreduc 99.6 2.1E-16 7.2E-21 141.3 7.1 79 248-345 73-161 (181)
4 4egs_A Ribose 5-phosphate isom 68.0 4.2 0.00014 35.5 3.8 42 251-292 34-75 (180)
5 2oa5_A Hypothetical protein BQ 54.8 7.4 0.00025 32.8 2.8 24 117-140 9-32 (110)
6 1d1q_A Tyrosine phosphatase (E 48.6 14 0.00046 31.4 3.6 41 252-292 8-51 (161)
7 4etn_A LMPTP, low molecular we 46.1 14 0.00048 32.5 3.3 43 251-293 34-76 (184)
8 1r8e_A Multidrug-efflux transp 45.4 35 0.0012 30.2 5.9 90 33-148 15-111 (278)
9 1u2p_A Ptpase, low molecular w 45.3 15 0.0005 31.2 3.3 41 252-292 5-47 (163)
10 2cwd_A Low molecular weight ph 43.0 19 0.00064 30.6 3.5 42 251-292 4-47 (161)
11 2gi4_A Possible phosphotyrosin 39.8 26 0.00087 29.7 3.9 40 253-292 3-44 (156)
12 2w6b_A RHO guanine nucleotide 39.7 76 0.0026 23.8 5.9 35 109-143 3-37 (56)
13 1q06_A Transcriptional regulat 39.3 46 0.0016 27.4 5.3 32 113-144 76-107 (135)
14 3n8i_A Low molecular weight ph 38.7 22 0.00077 30.2 3.4 42 251-292 5-48 (157)
15 2yy0_A C-MYC-binding protein; 37.5 52 0.0018 23.9 4.7 30 118-147 21-50 (53)
16 4etm_A LMPTP, low molecular we 37.3 25 0.00085 30.5 3.5 42 252-293 19-62 (173)
17 3rof_A Low molecular weight pr 35.7 28 0.00094 29.9 3.5 41 252-292 7-48 (158)
18 1jl3_A Arsenate reductase; alp 34.0 22 0.00074 29.3 2.5 37 253-292 5-41 (139)
19 3jvi_A Protein tyrosine phosph 33.4 32 0.0011 29.3 3.5 40 253-292 6-47 (161)
20 2vz4_A Tipal, HTH-type transcr 27.3 39 0.0013 26.6 2.8 31 116-146 74-104 (108)
21 1p8a_A Protein tyrosine phosph 26.9 47 0.0016 27.5 3.4 25 252-276 5-29 (146)
22 3qh9_A Liprin-beta-2; coiled-c 25.5 1.2E+02 0.004 24.3 5.2 33 118-150 21-53 (81)
23 1q08_A Zn(II)-responsive regul 24.7 1.5E+02 0.005 22.4 5.6 51 97-147 12-70 (99)
24 1ois_A DNA topoisomerase I; DN 24.1 43 0.0015 31.2 2.8 39 113-151 93-131 (223)
25 3gpv_A Transcriptional regulat 24.0 1.8E+02 0.0061 24.2 6.5 91 33-148 26-127 (148)
26 1jf8_A Arsenate reductase; ptp 23.9 41 0.0014 27.5 2.4 37 253-292 5-41 (131)
27 1r8d_A Transcription activator 23.0 80 0.0027 24.7 3.9 28 116-143 75-102 (109)
No 1
>2auv_A Potential NAD-reducing hydrogenase subunit; thioredoxin, thiordoxin-like, oxidoreductase; NMR {Desulfovibrio fructosovorans}
Probab=99.74 E-value=6.5e-19 Score=137.72 Aligned_cols=74 Identities=26% Similarity=0.448 Sum_probs=67.9
Q ss_pred cCCCcEEEEccCCccccccHHHHHHHHHHHhCC---------ccEEEeecCCCCCCCCCeEEEeCCCCCChhhhhccCCC
Q 018470 249 TTRTKRIEVCMGGKCKKLGAGALLEEFERKAGA---------ECDVSMCKCMGKCRDGPNLRVSNSHDGDSAIRIQGYAK 319 (355)
Q Consensus 249 ~~~~~rI~VC~Gt~C~ksGS~aVLeafee~Lg~---------eV~V~~tGCLG~Cg~GPnVrV~pe~dg~~~~~~~~~v~ 319 (355)
+.++++|+||+|++|+.+||.+|+++|++.++. ++++..++|||.|..||+|+|++
T Consensus 3 p~g~~~I~VC~g~~C~~~Ga~~v~~~l~~~l~~~~~~tt~d~~v~l~~~~ClG~C~~~P~v~V~~--------------- 67 (85)
T 2auv_A 3 PKGKYPISVCMGTACFVKGADKVVHAFKEQLKIDIGDVTPDGRFSIDTLRCVGGCALAPIVMVGE--------------- 67 (85)
T ss_dssp SCCSBCEECCCCHHHHTTTHHHHHHHHHHHHCCSSSSSSSSCCBCCBSSSSSSSCTTSCCCEEGG---------------
T ss_pred CCCCEEEEECCCchHHHcCHHHHHHHHHHHhCcccCCcCCCCeEEEEECCccCcCCCCCEEEECC---------------
Confidence 467899999999999999999999999999862 47899999999999999999974
Q ss_pred CCCceeeecCCcchHHHHHHHH
Q 018470 320 PSINSLCIGVGLEDVDMILANI 341 (355)
Q Consensus 320 ~p~n~lY~~VtpEDVdeIVe~h 341 (355)
.||.+|+++||++||++|
T Consensus 68 ----~~y~~vt~e~v~~il~~~ 85 (85)
T 2auv_A 68 ----KVYGNVTPGQVKKILAEY 85 (85)
T ss_dssp ----GCCCCSSSSHHHHHHHHC
T ss_pred ----EEECCCCHHHHHHHHHhC
Confidence 789999999999999875
No 2
>1m2d_A [2Fe-2S] ferredoxin; thioredoxin-like fold, [2Fe-2S] cluster, Cys59Ser variant, electron transport; 1.05A {Aquifex aeolicus} SCOP: c.47.1.11 PDB: 1m2a_A 1f37_A 1m2b_A
Probab=99.73 E-value=3.4e-18 Score=139.81 Aligned_cols=78 Identities=28% Similarity=0.434 Sum_probs=70.3
Q ss_pred CCcEEEEccC--------CccccccHHHHHHHHHHHhCCc------cEEEeecCCCCCCCCCeEEEeCCCCCChhhhhcc
Q 018470 251 RTKRIEVCMG--------GKCKKLGAGALLEEFERKAGAE------CDVSMCKCMGKCRDGPNLRVSNSHDGDSAIRIQG 316 (355)
Q Consensus 251 ~~~rI~VC~G--------t~C~ksGS~aVLeafee~Lg~e------V~V~~tGCLG~Cg~GPnVrV~pe~dg~~~~~~~~ 316 (355)
++++|+||+| ++|..+||.+|+++|++.++.. ++|..++|||.|..||+|+|+| ++
T Consensus 2 ~~~~I~VC~~~r~~~~~~~~C~~~Ga~~l~~~l~~~l~~~~g~~~~v~v~~~~ClG~C~~gP~v~V~P--~~-------- 71 (110)
T 1m2d_A 2 EFKHVFVCVQDRPPGHPQGSCAQRGSREVFQAFMEKIQTDPQLFMTTVITPTGCMNASMMGPVVVVYP--DG-------- 71 (110)
T ss_dssp -CEEEEEECCCCCTTCTTCCTGGGTHHHHHHHHHHHHHHCHHHHTTEEEEEESCCSCGGGCSCEEEET--TT--------
T ss_pred CceEEEECCCCCCCCCCCCCchhcCHHHHHHHHHHHHHHhcCCCCeEEEEECCCCCccCCCCEEEEEe--CC--------
Confidence 5789999999 8999999999999999988643 7999999999999999999998 33
Q ss_pred CCCCCCceeeecCCcchHHHHHHHHhcCC
Q 018470 317 YAKPSINSLCIGVGLEDVDMILANILGKD 345 (355)
Q Consensus 317 ~v~~p~n~lY~~VtpEDVdeIVe~hlg~~ 345 (355)
.||++|+++||++||++|+.++
T Consensus 72 -------~~y~~vt~e~v~~il~~~l~~g 93 (110)
T 1m2d_A 72 -------VWYGQVKPEDVDEIVEKHLKGG 93 (110)
T ss_dssp -------EEECSCCGGGHHHHHHHTTTTS
T ss_pred -------EEEecCCHHHHHHHHHHHHHCC
Confidence 8999999999999999998554
No 3
>3i9v_2 NADH-quinone oxidoreductase subunit 2; electron transport, respiratory chain, cell flavoprotein, FMN, iron, iron-sulfur, membrane; HET: FMN; 3.10A {Thermus thermophilus} PDB: 2ybb_2* 2fug_2* 3iam_2* 3ias_2* 3m9s_2*
Probab=99.64 E-value=2.1e-16 Score=141.30 Aligned_cols=79 Identities=23% Similarity=0.434 Sum_probs=70.6
Q ss_pred ccCCCcEEEEccCCccccccHHHHHHHHHHHhCC---------ccEEEeecCCCCCCCCCeEEEeCCCCCChhhhhccCC
Q 018470 248 TTTRTKRIEVCMGGKCKKLGAGALLEEFERKAGA---------ECDVSMCKCMGKCRDGPNLRVSNSHDGDSAIRIQGYA 318 (355)
Q Consensus 248 ~~~~~~rI~VC~Gt~C~ksGS~aVLeafee~Lg~---------eV~V~~tGCLG~Cg~GPnVrV~pe~dg~~~~~~~~~v 318 (355)
...++++|.||+|++|+.+||.+|+++|++.|+. .+++..++|||.|..||+|+|++
T Consensus 73 ~P~gk~~I~VC~gt~C~~~Ga~~i~~~l~~~L~i~~gett~Dg~~tl~~~~ClG~C~~gPvv~V~~-------------- 138 (181)
T 3i9v_2 73 VPTGKYHLQVCATLSCKLAGAEELWDYLTETLGIGPGEVTPDGLFSVQKVECLGSCHTAPVIQVND-------------- 138 (181)
T ss_dssp SCCCSEEEEEECSHHHHTTTHHHHHHHHHHHHTCCTTCCCTTSCEEEEEESCCSCGGGCSCEECSS--------------
T ss_pred CCCCCEEEEECCCchhhhcCHHHHHHHHHHHhCcCCCCcCCCCcEEEEEcCCCCccCCCCEEEECC--------------
Confidence 4567899999999999999999999999999974 25899999999999999999964
Q ss_pred CCCCce-eeecCCcchHHHHHHHHhcCC
Q 018470 319 KPSINS-LCIGVGLEDVDMILANILGKD 345 (355)
Q Consensus 319 ~~p~n~-lY~~VtpEDVdeIVe~hlg~~ 345 (355)
. ||.+|++++|++||+++.++.
T Consensus 139 -----~~~y~~vt~e~v~~Il~~l~~g~ 161 (181)
T 3i9v_2 139 -----EPYVECVTRARLEALLAGLRAGK 161 (181)
T ss_dssp -----SCCBCCCCHHHHHHHHHHHHTTC
T ss_pred -----EEEEcCCCHHHHHHHHHHHHcCC
Confidence 4 899999999999999966543
No 4
>4egs_A Ribose 5-phosphate isomerase RPIB; tyrosine phosphatase, dephosphorylation, hydrolase; 2.30A {Thermoanaerobacter tengcongensis}
Probab=68.01 E-value=4.2 Score=35.55 Aligned_cols=42 Identities=14% Similarity=0.362 Sum_probs=35.8
Q ss_pred CCcEEEEccCCccccccHHHHHHHHHHHhCCccEEEeecCCC
Q 018470 251 RTKRIEVCMGGKCKKLGAGALLEEFERKAGAECDVSMCKCMG 292 (355)
Q Consensus 251 ~~~rI~VC~Gt~C~ksGS~aVLeafee~Lg~eV~V~~tGCLG 292 (355)
.-+.++||+|+.|++-=|+.|+..+.+.++.++.|...|-..
T Consensus 34 ~mkVLFVC~GNiCRSpmAE~l~r~~~~~~g~~~~v~SAGt~~ 75 (180)
T 4egs_A 34 SMRVLFVCTGNTCRSPMAEGIFNAKSKALGKDWEAKSAGVFA 75 (180)
T ss_dssp CCEEEEEESSSSSHHHHHHHHHHHHHHHTTCCCEEEEEETTC
T ss_pred CeEEEEEeCCCcccCHHHHHHHHHHHHhcCCceEEEEeeecC
Confidence 345778999999999999999999888888888888888644
No 5
>2oa5_A Hypothetical protein BQLF2; MHR28B, NESG, structural genomics, PSI-2, protein structure initiative, northeast structural genomics consortium; HET: PE5; 2.10A {Murid herpesvirus 4} SCOP: d.362.1.1 PDB: 2h3r_A*
Probab=54.82 E-value=7.4 Score=32.77 Aligned_cols=24 Identities=25% Similarity=0.369 Sum_probs=20.5
Q ss_pred HHHHHHHHHHHhhHHHHHHHHHHH
Q 018470 117 AVQVLQAQLLQLRSEQKELKKMMK 140 (355)
Q Consensus 117 a~e~L~~qL~q~r~eekelKk~~K 140 (355)
.+|-|.+||++|+-|-|.||||.+
T Consensus 9 t~EeLaaeL~kLqmENK~LKkkl~ 32 (110)
T 2oa5_A 9 TYEEMVKEVERLKLENKTLKQKVK 32 (110)
T ss_dssp SHHHHHHHHHHHHHHHHHHHHTC-
T ss_pred CHHHHHHHHHHHHHHHHHHHHHHh
Confidence 368899999999999999998764
No 6
>1d1q_A Tyrosine phosphatase (E.C.3.1.3.48); beta-alpha-beta, hydrolase; HET: 4NP; 1.70A {Saccharomyces cerevisiae} SCOP: c.44.1.1 PDB: 1d2a_A* 1d1p_A*
Probab=48.64 E-value=14 Score=31.41 Aligned_cols=41 Identities=17% Similarity=0.183 Sum_probs=32.7
Q ss_pred CcEEEEccCCccccccHHHHHHHHHHHhCCc---cEEEeecCCC
Q 018470 252 TKRIEVCMGGKCKKLGAGALLEEFERKAGAE---CDVSMCKCMG 292 (355)
Q Consensus 252 ~~rI~VC~Gt~C~ksGS~aVLeafee~Lg~e---V~V~~tGCLG 292 (355)
.+.++||+|+.|++-=|++|+..+-...+.. +.|...|=-+
T Consensus 8 ~~VLFVCtgN~cRSpmAEal~~~~~~~~gl~~~~~~v~SAGt~~ 51 (161)
T 1d1q_A 8 ISVAFIALGNFCRSPMAEAIFKHEVEKANLENRFNKIDSFGTSN 51 (161)
T ss_dssp EEEEEEESSSSSHHHHHHHHHHHHHHHTTCGGGEEEEEEEESSC
T ss_pred CEEEEEcCCcHHHHHHHHHHHHHHHHHcCCCCCeEEEEeccccC
Confidence 4577899999999999999999988776643 6777776654
No 7
>4etn_A LMPTP, low molecular weight protein-tyrosine-phosphatase; dephosphorylation, hydrolase; 1.10A {Bacillus subtilis} PDB: 4eti_A 1zgg_A
Probab=46.11 E-value=14 Score=32.54 Aligned_cols=43 Identities=21% Similarity=0.337 Sum_probs=34.8
Q ss_pred CCcEEEEccCCccccccHHHHHHHHHHHhCCccEEEeecCCCC
Q 018470 251 RTKRIEVCMGGKCKKLGAGALLEEFERKAGAECDVSMCKCMGK 293 (355)
Q Consensus 251 ~~~rI~VC~Gt~C~ksGS~aVLeafee~Lg~eV~V~~tGCLG~ 293 (355)
+.+.++||+|+.|.+-=|++|+..+-...+.++.|...|--+.
T Consensus 34 ~~~VLFVC~gNiCRSpmAEai~r~~~~~~g~~~~v~SAGt~~~ 76 (184)
T 4etn_A 34 SMDIIFVCTGNTSRSPMAEALFKSIAEREGLNVNVRSAGVFAS 76 (184)
T ss_dssp CEEEEEEESSSSSHHHHHHHHHHHHHHHHTCCEEEEEEETTCC
T ss_pred CCEEEEECCCchhHHHHHHHHHHHHHHhcCCcEEEEeeecCCc
Confidence 3466789999999999999999988877666777877776543
No 8
>1r8e_A Multidrug-efflux transporter regulator; protein-DNA complex, MERR-family transcription activator, MU binding protein; HET: P4P; 2.40A {Bacillus subtilis} SCOP: a.6.1.3 d.60.1.1 PDB: 1exi_A* 1exj_A* 3iao_A 3q5p_A* 3d71_A* 3q3d_A* 3q1m_A* 3q2y_A* 3q5r_A* 3q5s_A* 3d70_A 3d6z_A* 3d6y_A* 1bow_A 2bow_A*
Probab=45.42 E-value=35 Score=30.18 Aligned_cols=90 Identities=18% Similarity=0.240 Sum_probs=50.9
Q ss_pred eeeeccc-cchhhccc---cccc-ccccceeccccccchhhhhhhhhhhhHhHHHHHHHHHHHhcCcccccccCCcCCc-
Q 018470 33 FRVSERT-RNSFRRLS---SRFS-DCGHQQYYVSPRKETKKKEKEKSSEIKSVRKKLKFMKRLSSDLLPLEAFGNEDAS- 106 (355)
Q Consensus 33 ~~v~~~~-r~~~~~~~---~~F~-D~ghl~yy~~~~k~~~~k~k~k~~~~~s~kkk~k~lk~ls~dl~~~~~~g~~~d~- 106 (355)
++||-|| |+ .-..| .... +++..|||...-=. .+.+++. |..+||..+-
T Consensus 15 ~gvs~~tlr~-y~~~gll~p~~~d~~~g~R~y~~~~~~-----------------~l~~i~~-------l~~~g~~l~~i 69 (278)
T 1r8e_A 15 ANVSIKALRY-YDKIDLFKPAYVDPDTSYRYYTDSQLI-----------------HLDLIKS-------LKYIGTPLEEM 69 (278)
T ss_dssp HTCCHHHHHH-HHHTTSSCCSEECTTTCCEEEETGGGG-----------------HHHHHHH-------HHHTTCCHHHH
T ss_pred HCcCHHHHHH-HHHCCCCCCCccCCCCCccccCHHHHH-----------------HHHHHHH-------HHHCCCCHHHH
Confidence 3577777 54 33332 1223 46777888775331 1223443 3445555331
Q ss_pred -cccchhhhhHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHH
Q 018470 107 -SLRNEERISEAVQVLQAQLLQLRSEQKELKKMMKEKKAQIKT 148 (355)
Q Consensus 107 -~l~~~~~~sea~e~L~~qL~q~r~eekelKk~~K~eka~lKa 148 (355)
.+++.. ..+..++|.++++++.++..+|++.++.=...+..
T Consensus 70 ~~~~~~~-~~~~~~~l~~~~~~l~~~i~~l~~~~~~l~~~~~~ 111 (278)
T 1r8e_A 70 KKAQDLE-MEELFAFYTEQERQIREKLDFLSALEQTISLVKKR 111 (278)
T ss_dssp HHHTTSC-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHhC-hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 123322 45667788888999988888888777655544443
No 9
>1u2p_A Ptpase, low molecular weight protein-tyrosine- phosphatase; hydrolase; 1.90A {Mycobacterium tuberculosis} PDB: 1u2q_A
Probab=45.33 E-value=15 Score=31.18 Aligned_cols=41 Identities=20% Similarity=0.268 Sum_probs=32.1
Q ss_pred CcEEEEccCCccccccHHHHHHHHHHHhC--CccEEEeecCCC
Q 018470 252 TKRIEVCMGGKCKKLGAGALLEEFERKAG--AECDVSMCKCMG 292 (355)
Q Consensus 252 ~~rI~VC~Gt~C~ksGS~aVLeafee~Lg--~eV~V~~tGCLG 292 (355)
.+.++||+|+.|++-=|++|+..+-+..+ ..+.|...|=-.
T Consensus 5 ~~VLFVC~gN~cRSpmAEal~~~~~~~~gl~~~~~v~SAGt~~ 47 (163)
T 1u2p_A 5 LHVTFVCTGNICRSPMAEKMFAQQLRHRGLGDAVRVTSAGTGN 47 (163)
T ss_dssp EEEEEEESSSSSHHHHHHHHHHHHHHHTTCTTTEEEEEEESSC
T ss_pred CEEEEEcCCcHhHHHHHHHHHHHHHHHCCCCCcEEEEecccCC
Confidence 45778999999999999999999877644 346777666554
No 10
>2cwd_A Low molecular weight phosphotyrosine protein PHOS; tyrosine phosphatase, structural genomics; 1.90A {Thermus thermophilus}
Probab=43.00 E-value=19 Score=30.61 Aligned_cols=42 Identities=17% Similarity=0.381 Sum_probs=33.1
Q ss_pred CCcEEEEccCCccccccHHHHHHHHHHHhC--CccEEEeecCCC
Q 018470 251 RTKRIEVCMGGKCKKLGAGALLEEFERKAG--AECDVSMCKCMG 292 (355)
Q Consensus 251 ~~~rI~VC~Gt~C~ksGS~aVLeafee~Lg--~eV~V~~tGCLG 292 (355)
+.+.++||+|+.|.+-=|++|+..+-...+ ..+.|...|=-.
T Consensus 4 ~~~VLFVC~gN~cRSpmAEal~~~~~~~~gl~~~~~v~SAGt~~ 47 (161)
T 2cwd_A 4 PVRVLFVCLGNICRSPMAEGIFRKLLKERGLEDRFEVDSAGTGA 47 (161)
T ss_dssp CEEEEEEESSSSSHHHHHHHHHHHHHHHHTCTTTEEEEEEESSC
T ss_pred CCEEEEECCCcHHHHHHHHHHHHHHHHHcCCCCcEEEEecccCC
Confidence 346778999999999999999999887655 356777766654
No 11
>2gi4_A Possible phosphotyrosine protein phosphatase; low molecular weight, protein tyrosine phosphatase, bacterial phosphatase; NMR {Campylobacter jejuni}
Probab=39.80 E-value=26 Score=29.72 Aligned_cols=40 Identities=23% Similarity=0.434 Sum_probs=32.0
Q ss_pred cEEEEccCCccccccHHHHHHHHHHHhCC--ccEEEeecCCC
Q 018470 253 KRIEVCMGGKCKKLGAGALLEEFERKAGA--ECDVSMCKCMG 292 (355)
Q Consensus 253 ~rI~VC~Gt~C~ksGS~aVLeafee~Lg~--eV~V~~tGCLG 292 (355)
+.++||+|+.|++-=|++|+..+-...+. .+.|...|=-.
T Consensus 3 ~VLFVC~gNicRSpmAEai~~~~~~~~gl~~~~~v~SAGt~~ 44 (156)
T 2gi4_A 3 KILFICLGNICRSPMAEFIMKDLVKKANLEKEFFINSAGTSG 44 (156)
T ss_dssp EEEEECSSCSSHHHHHHHHHHHHHHHHTTTTTCEEEEEBSSC
T ss_pred EEEEEeCCCHHHHHHHHHHHHHHHHhCCCCCcEEEEeeecCC
Confidence 46789999999999999999998776543 56777777654
No 12
>2w6b_A RHO guanine nucleotide exchange factor 7; X-RAY crystallography, phosphoprotein, guanine-nucleotide releasing factor, GIT, PAK, PIX, COOL; 2.80A {Rattus norvegicus}
Probab=39.70 E-value=76 Score=23.81 Aligned_cols=35 Identities=23% Similarity=0.476 Sum_probs=30.2
Q ss_pred cchhhhhHHHHHHHHHHHHhhHHHHHHHHHHHHHH
Q 018470 109 RNEERISEAVQVLQAQLLQLRSEQKELKKMMKEKK 143 (355)
Q Consensus 109 ~~~~~~sea~e~L~~qL~q~r~eekelKk~~K~ek 143 (355)
+.++.|=|++=.|-.|++.|+.|-|.++|-..+|.
T Consensus 3 veEKSlVDtVYaLkDqV~eL~qe~k~m~k~lEeEq 37 (56)
T 2w6b_A 3 LGSKSLVDTVYALKDEVQELRQDNKKMKKSLEEEQ 37 (56)
T ss_dssp --CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred chHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 56889999999999999999999999999888883
No 13
>1q06_A Transcriptional regulator CUER; MERR family transcriptional regulator, copper efflux regulator; 2.07A {Escherichia coli} SCOP: a.6.1.3 PDB: 1q05_A 1q07_A
Probab=39.26 E-value=46 Score=27.40 Aligned_cols=32 Identities=13% Similarity=0.172 Sum_probs=22.9
Q ss_pred hhhHHHHHHHHHHHHhhHHHHHHHHHHHHHHH
Q 018470 113 RISEAVQVLQAQLLQLRSEQKELKKMMKEKKA 144 (355)
Q Consensus 113 ~~sea~e~L~~qL~q~r~eekelKk~~K~eka 144 (355)
...+..++|..+++++..+-.+|++.++.=..
T Consensus 76 ~~~~~~~~l~~~~~~l~~~i~~L~~~~~~L~~ 107 (135)
T 1q06_A 76 HSADVKRRTLEKVAEIERHIEELQSMRDQLLA 107 (135)
T ss_dssp CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 35567788888888888888887766554443
No 14
>3n8i_A Low molecular weight phosphotyrosine protein PHOS; tyrosine phosphatase, hydrolase, protein-ligand complex; HET: NLA; 1.50A {Homo sapiens} SCOP: c.44.1.1 PDB: 5pnt_A* 1xww_A 1bvh_A 1dg9_A* 1phr_A 1pnt_A 1z12_A 1z13_A 1c0e_A 2p4u_A
Probab=38.70 E-value=22 Score=30.22 Aligned_cols=42 Identities=19% Similarity=0.343 Sum_probs=32.4
Q ss_pred CCcEEEEccCCccccccHHHHHHHHHHHhCC--ccEEEeecCCC
Q 018470 251 RTKRIEVCMGGKCKKLGAGALLEEFERKAGA--ECDVSMCKCMG 292 (355)
Q Consensus 251 ~~~rI~VC~Gt~C~ksGS~aVLeafee~Lg~--eV~V~~tGCLG 292 (355)
..+.++||+|+.|++-=|++|+..+-...+. .+.|...|=-.
T Consensus 5 ~~~vLFVC~gN~cRSpmAE~~~~~~~~~~gl~~~~~v~SAGt~~ 48 (157)
T 3n8i_A 5 TKSVLFVCLGNICRSPIAEAVFRKLVTDQNISENWRVDSAATSG 48 (157)
T ss_dssp CEEEEEEESSSSSHHHHHHHHHHHHHHHTTCGGGEEEEEEESSS
T ss_pred CCEEEEECCCchhHHHHHHHHHHHHHHHcCCCCcEEEEeeecCc
Confidence 4456789999999999999999988877654 46666666544
No 15
>2yy0_A C-MYC-binding protein; conserved hypothetical protein, structural genomics, NPPSFA, national project on protein structural and functional analyses; 2.40A {Homo sapiens}
Probab=37.49 E-value=52 Score=23.90 Aligned_cols=30 Identities=17% Similarity=0.372 Sum_probs=26.3
Q ss_pred HHHHHHHHHHhhHHHHHHHHHHHHHHHHHH
Q 018470 118 VQVLQAQLLQLRSEQKELKKMMKEKKAQIK 147 (355)
Q Consensus 118 ~e~L~~qL~q~r~eekelKk~~K~eka~lK 147 (355)
+|.|.+|++.||++=.+|+++-.+-+++|.
T Consensus 21 ~eaLk~E~~eLk~k~~~L~~~~~el~~~l~ 50 (53)
T 2yy0_A 21 IELLRLELAEMKEKYEAIVEENKKLKAKLA 50 (53)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 688999999999999999998888888775
No 16
>4etm_A LMPTP, low molecular weight protein-tyrosine-phosphatase; dephosphorylation, hydrolase; 1.60A {Bacillus subtilis}
Probab=37.25 E-value=25 Score=30.48 Aligned_cols=42 Identities=21% Similarity=0.385 Sum_probs=32.5
Q ss_pred CcEEEEccCCccccccHHHHHHHHHHHhC--CccEEEeecCCCC
Q 018470 252 TKRIEVCMGGKCKKLGAGALLEEFERKAG--AECDVSMCKCMGK 293 (355)
Q Consensus 252 ~~rI~VC~Gt~C~ksGS~aVLeafee~Lg--~eV~V~~tGCLG~ 293 (355)
.+.++||+|+.|++-=|+.|+..+-+.-+ ..+.|...|=-+.
T Consensus 19 ~kVLFVCtGNiCRSpmAE~i~r~~~~~~gl~~~~~v~SAGt~~~ 62 (173)
T 4etm_A 19 ISVLFVCLGNICRSPMAEAIFRDLAAKKGLEGKIKADSAGIGGW 62 (173)
T ss_dssp EEEEEEESSSSSHHHHHHHHHHHHHHHTTCTTTEEEEEEESSCT
T ss_pred cEEEEEeCCcchhhHHHHHHHHHHHHHcCCCCceEEeccccccC
Confidence 35788999999999999999998876644 4567777775443
No 17
>3rof_A Low molecular weight protein-tyrosine-phosphatase; phosphatase, hydrolase; 1.03A {Staphylococcus aureus}
Probab=35.72 E-value=28 Score=29.86 Aligned_cols=41 Identities=17% Similarity=0.244 Sum_probs=31.5
Q ss_pred CcEEEEccCCccccccHHHHHHHHHHHhCC-ccEEEeecCCC
Q 018470 252 TKRIEVCMGGKCKKLGAGALLEEFERKAGA-ECDVSMCKCMG 292 (355)
Q Consensus 252 ~~rI~VC~Gt~C~ksGS~aVLeafee~Lg~-eV~V~~tGCLG 292 (355)
.+.++||+|+.|++-=|++|+..+-+..+. ++.+...|=-.
T Consensus 7 ~~vLFVC~gN~cRSpmAE~i~~~~~~~~gl~~~~v~SAGt~~ 48 (158)
T 3rof_A 7 VDVAFVCLGNICRSPMAEAIMRQRLKDRNIHDIKVHSRGTGS 48 (158)
T ss_dssp EEEEEEESSSSSHHHHHHHHHHHHHHHTTCCSEEEEEEETTC
T ss_pred CEEEEEeCCchhHHHHHHHHHHHHHHHcCCCCeEEEecccCC
Confidence 356789999999999999999988776553 36666666544
No 18
>1jl3_A Arsenate reductase; alpha-beta fold, PTP-loop, oxidoreductase; 1.60A {Bacillus subtilis} SCOP: c.44.1.1 PDB: 1z2d_A 1z2e_A 2ipa_B
Probab=34.03 E-value=22 Score=29.27 Aligned_cols=37 Identities=19% Similarity=0.301 Sum_probs=28.0
Q ss_pred cEEEEccCCccccccHHHHHHHHHHHhCCccEEEeecCCC
Q 018470 253 KRIEVCMGGKCKKLGAGALLEEFERKAGAECDVSMCKCMG 292 (355)
Q Consensus 253 ~rI~VC~Gt~C~ksGS~aVLeafee~Lg~eV~V~~tGCLG 292 (355)
+.++||+|+.|.+-=|++|+..+ ++..+.+...|=-.
T Consensus 5 ~VLFVC~gN~cRSpmAEai~~~~---~~~~~~v~SAGt~~ 41 (139)
T 1jl3_A 5 IIYFLCTGNSCRSQMAEGWAKQY---LGDEWKVYSAGIEA 41 (139)
T ss_dssp EEEEEESSSSSHHHHHHHHHHHH---SCTTEEEEEEESSC
T ss_pred eEEEEcCCchHHHHHHHHHHHHh---CCCCEEEEcCcCCC
Confidence 56789999999999999998866 34456666666554
No 19
>3jvi_A Protein tyrosine phosphatase; niaid, ssgcid, seattle structural genomics center for infect disease, parasitic protozoan, dysentery; 1.80A {Entamoeba histolytica} PDB: 3js5_A* 3ily_A 3ido_A*
Probab=33.39 E-value=32 Score=29.28 Aligned_cols=40 Identities=18% Similarity=0.307 Sum_probs=31.2
Q ss_pred cEEEEccCCccccccHHHHHHHHHHHhCC--ccEEEeecCCC
Q 018470 253 KRIEVCMGGKCKKLGAGALLEEFERKAGA--ECDVSMCKCMG 292 (355)
Q Consensus 253 ~rI~VC~Gt~C~ksGS~aVLeafee~Lg~--eV~V~~tGCLG 292 (355)
+.++||+|+.|++-=|++|+..+-+..+. .+.|...|=..
T Consensus 6 ~vLFVC~gN~cRSpmAE~~~~~~~~~~gl~~~~~v~SAGt~~ 47 (161)
T 3jvi_A 6 KLLFVCLGNICRSPAAEAVMKKVIQNHHLTEKYICDSAGTCS 47 (161)
T ss_dssp EEEEEESSSSSHHHHHHHHHHHHHHHTTCGGGEEEEEEESCC
T ss_pred EEEEECCCchhHHHHHHHHHHHHHHHcCCCCcEEEEeeecCC
Confidence 46789999999999999999988877653 46666665543
No 20
>2vz4_A Tipal, HTH-type transcriptional activator TIPA; transcription, resistance, antibiotic; 2.90A {Streptomyces lividans}
Probab=27.27 E-value=39 Score=26.61 Aligned_cols=31 Identities=19% Similarity=0.186 Sum_probs=20.0
Q ss_pred HHHHHHHHHHHHhhHHHHHHHHHHHHHHHHH
Q 018470 116 EAVQVLQAQLLQLRSEQKELKKMMKEKKAQI 146 (355)
Q Consensus 116 ea~e~L~~qL~q~r~eekelKk~~K~eka~l 146 (355)
+..+.|.++++++..+-.++++.++.=..++
T Consensus 74 ~~~~~l~~~~~~l~~~i~~l~~~~~~l~~~~ 104 (108)
T 2vz4_A 74 DPRAHLRRQHELLSARIGKLQKMAAAVEQAM 104 (108)
T ss_dssp --CCHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4456778888888888777777665544443
No 21
>1p8a_A Protein tyrosine phosphatase; hydrolase; NMR {Tritrichomonas foetus} SCOP: c.44.1.1
Probab=26.94 E-value=47 Score=27.50 Aligned_cols=25 Identities=16% Similarity=0.481 Sum_probs=21.6
Q ss_pred CcEEEEccCCccccccHHHHHHHHH
Q 018470 252 TKRIEVCMGGKCKKLGAGALLEEFE 276 (355)
Q Consensus 252 ~~rI~VC~Gt~C~ksGS~aVLeafe 276 (355)
.+.++||+|+.|++-=|++|+..+-
T Consensus 5 ~~VLFVC~gN~cRSpmAEal~~~~~ 29 (146)
T 1p8a_A 5 KAVLFVCLGNICRSPACEGICRDMV 29 (146)
T ss_dssp CCEEEESSSSCSSSTTHHHHHHHHH
T ss_pred CEEEEEcCCcHHHHHHHHHHHHHhc
Confidence 3678899999999999999988764
No 22
>3qh9_A Liprin-beta-2; coiled-coil, dimerization, structural protein; 2.01A {Homo sapiens}
Probab=25.55 E-value=1.2e+02 Score=24.31 Aligned_cols=33 Identities=21% Similarity=0.261 Sum_probs=26.8
Q ss_pred HHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHhh
Q 018470 118 VQVLQAQLLQLRSEQKELKKMMKEKKAQIKTTM 150 (355)
Q Consensus 118 ~e~L~~qL~q~r~eekelKk~~K~eka~lKa~~ 150 (355)
+|.|++|+..||-.=-|+--.|-|=..+||+++
T Consensus 21 ~E~L~qEi~~Lr~kv~elEnErlQyEkKLKsTK 53 (81)
T 3qh9_A 21 AEELLQELRHLKIKVEELENERNQYEWKLKATK 53 (81)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhH
Confidence 468999999999888888777766678888865
No 23
>1q08_A Zn(II)-responsive regulator of ZNTA; MERR family transcriptional regulator; 1.90A {Escherichia coli} SCOP: a.6.1.3 PDB: 1q09_A 1q0a_A
Probab=24.73 E-value=1.5e+02 Score=22.39 Aligned_cols=51 Identities=20% Similarity=0.229 Sum_probs=33.9
Q ss_pred ccccCCcCCc--cccc----hh--hhhHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHH
Q 018470 97 LEAFGNEDAS--SLRN----EE--RISEAVQVLQAQLLQLRSEQKELKKMMKEKKAQIK 147 (355)
Q Consensus 97 ~~~~g~~~d~--~l~~----~~--~~sea~e~L~~qL~q~r~eekelKk~~K~eka~lK 147 (355)
|..+||..+- .+++ +. ...+..++|.++++++..+-.++++.++.=..++.
T Consensus 12 lr~lGfsL~eIk~~l~~~~~~~~~~~~~~~~~L~~~~~~l~~~i~~L~~~~~~L~~~~~ 70 (99)
T 1q08_A 12 ARQLGFSLESIRELLSIRIDPEHHTCQESKGIVQERLQEVEARIAELQSMQRSLQRLND 70 (99)
T ss_dssp HHHTTCCHHHHHHHHHHHHCGGGCBHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHCCCCHHHHHHHHHHHhCCCcccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 6677777542 1222 11 45677889999999999988888777665554443
No 24
>1ois_A DNA topoisomerase I; DNA-binding protein; HET: DNA; 1.90A {Saccharomyces cerevisiae} SCOP: e.15.1.1
Probab=24.07 E-value=43 Score=31.20 Aligned_cols=39 Identities=15% Similarity=0.189 Sum_probs=29.1
Q ss_pred hhhHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHhhh
Q 018470 113 RISEAVQVLQAQLLQLRSEQKELKKMMKEKKAQIKTTMK 151 (355)
Q Consensus 113 ~~sea~e~L~~qL~q~r~eekelKk~~K~eka~lKa~~~ 151 (355)
-.|+.-+-+.+|-|+-|+--||.|++.|+||.++.+--+
T Consensus 93 DFs~i~~~~~~~~e~kk~~skEEKk~~Keek~~~~~~y~ 131 (223)
T 1ois_A 93 DFTKMFDYFQLQKEQKKQLTSQEKKQIRLEREKFEEDYK 131 (223)
T ss_dssp ECHHHHHHHHHHHHHHTTC---CHHHHHHHHHHHHHHHH
T ss_pred CCHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHhhcC
Confidence 356778889999998888888999999999988877333
No 25
>3gpv_A Transcriptional regulator, MERR family; protein structure initiative II(PSI II), NYSGXRC, structural genomics; 1.90A {Bacillus thuringiensis serovarkonkukian}
Probab=23.96 E-value=1.8e+02 Score=24.20 Aligned_cols=91 Identities=11% Similarity=0.130 Sum_probs=54.0
Q ss_pred eeeeccc-cchhhcccc---cccccccceeccccccchhhhhhhhhhhhHhHHHHHHHHHHHhcCcccccccCCcCCc--
Q 018470 33 FRVSERT-RNSFRRLSS---RFSDCGHQQYYVSPRKETKKKEKEKSSEIKSVRKKLKFMKRLSSDLLPLEAFGNEDAS-- 106 (355)
Q Consensus 33 ~~v~~~~-r~~~~~~~~---~F~D~ghl~yy~~~~k~~~~k~k~k~~~~~s~kkk~k~lk~ls~dl~~~~~~g~~~d~-- 106 (355)
++|+-++ |+ +-+.|- ...+++-.|||...-= ..+++++. |..+||..+-
T Consensus 26 ~gvs~~tLR~-Ye~~Gll~p~~r~~~g~R~Y~~~dl-----------------~~l~~I~~-------lr~~G~sL~eIk 80 (148)
T 3gpv_A 26 QHLTISQIRY-YDKQGLFPFLQRNEKGDRIFNEEAL-----------------KYLEMILC-------LKNTGMPIQKIK 80 (148)
T ss_dssp TTCCHHHHHH-HHHTTCCTTCEECTTCCEEBCHHHH-----------------HHHHHHHH-------HHTTTCCHHHHH
T ss_pred HCcCHHHHHH-HHHCCCCCCCcCCCCCCeecCHHHH-----------------HHHHHHHH-------HHHcCCCHHHHH
Confidence 4567777 55 333321 2345566688865322 23445554 4455665332
Q ss_pred cccc-----hhhhhHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHH
Q 018470 107 SLRN-----EERISEAVQVLQAQLLQLRSEQKELKKMMKEKKAQIKT 148 (355)
Q Consensus 107 ~l~~-----~~~~sea~e~L~~qL~q~r~eekelKk~~K~eka~lKa 148 (355)
.+++ ...+.+..++|..+++++..+-.+|++.+..=..++..
T Consensus 81 ~~l~~~~~~~~~~~~~~~~l~~~~~~l~~~i~~L~~~~~~L~~~i~~ 127 (148)
T 3gpv_A 81 QFIDWSMEGDSTILHRLKLMKQQEANVLQLIQDTEKNLKKIQQKIAK 127 (148)
T ss_dssp HHHHHHHHCGGGHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHhhhcCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 1222 23566778899999999999888888877665555554
No 26
>1jf8_A Arsenate reductase; ptpase I fold, P-loop, sulfinic acid, oxidoreductase; 1.12A {Staphylococcus aureus} SCOP: c.44.1.1 PDB: 1jfv_A 2fxi_A 1lju_A* 1rxi_A 1rxe_A 1ljl_A 2cd7_A 1lk0_A
Probab=23.90 E-value=41 Score=27.50 Aligned_cols=37 Identities=14% Similarity=0.032 Sum_probs=27.9
Q ss_pred cEEEEccCCccccccHHHHHHHHHHHhCCccEEEeecCCC
Q 018470 253 KRIEVCMGGKCKKLGAGALLEEFERKAGAECDVSMCKCMG 292 (355)
Q Consensus 253 ~rI~VC~Gt~C~ksGS~aVLeafee~Lg~eV~V~~tGCLG 292 (355)
+.++||+|+.|.+-=|++|+..+- +..+.+...|=-.
T Consensus 5 ~VLFVC~gN~cRSpmAEa~~~~~~---~~~~~v~SAGt~~ 41 (131)
T 1jf8_A 5 TIYFISTGNSARSQMAEGWGKEIL---GEGWNVYSAGIET 41 (131)
T ss_dssp EEEEEESSSSSHHHHHHHHHHHHS---TTTEEEEEEESSC
T ss_pred EEEEEcCCcchHHHHHHHHHHHhc---CCCEEEEcCcCCC
Confidence 467899999999999999887653 4556666666554
No 27
>1r8d_A Transcription activator MTAN; protein-DNA complex, transcription/DNA complex; 2.70A {Bacillus subtilis} SCOP: a.6.1.3 PDB: 1jbg_A
Probab=22.95 E-value=80 Score=24.73 Aligned_cols=28 Identities=18% Similarity=0.265 Sum_probs=20.1
Q ss_pred HHHHHHHHHHHHhhHHHHHHHHHHHHHH
Q 018470 116 EAVQVLQAQLLQLRSEQKELKKMMKEKK 143 (355)
Q Consensus 116 ea~e~L~~qL~q~r~eekelKk~~K~ek 143 (355)
+..+.|.+|++++..+..++.+..+.=.
T Consensus 75 ~~~~~l~~~~~~l~~~i~~l~~~~~~l~ 102 (109)
T 1r8d_A 75 DRKAALQSQKEILMKKKQRMDEMIQTID 102 (109)
T ss_dssp CHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3466888888888888888777665433
Done!