BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 018471
(355 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|1JM7|A Chain A, Solution Structure Of The Brca1/bard1 Ring-domain
Heterodimer
Length = 112
Score = 49.7 bits (117), Expect = 3e-06, Method: Composition-based stats.
Identities = 21/57 (36%), Positives = 34/57 (59%), Gaps = 3/57 (5%)
Query: 294 AAPGVSKCTLCLSNRQDPTATPCGHVFCWNCIMEWCNEK---PECPLCRAPITHSSL 347
A + +C +CL ++P +T C H+FC C+++ N+K +CPLC+ IT SL
Sbjct: 17 AMQKILECPICLELIKEPVSTKCDHIFCKFCMLKLLNQKKGPSQCPLCKNDITKRSL 73
>pdb|2ECN|A Chain A, Solution Structure Of The Ring Domain Of The Human Ring
Finger Protein 141
Length = 70
Score = 45.1 bits (105), Expect = 6e-05, Method: Composition-based stats.
Identities = 17/44 (38%), Positives = 24/44 (54%), Gaps = 1/44 (2%)
Query: 300 KCTLCLSNRQDPTATPCGHVFCWNCIMEWCNEKPECPLCRAPIT 343
+C +C+ R D PC H FC CI +W + CP+CR +T
Sbjct: 17 ECCICMDGRAD-LILPCAHSFCQKCIDKWSDRHRNCPICRLQMT 59
>pdb|1CHC|A Chain A, Structure Of The C3hc4 Domain By 1h-Nuclear Magnetic
Resonance Spectroscopy; A New Structural Class Of Zinc-
Finger
Length = 68
Score = 45.1 bits (105), Expect = 7e-05, Method: Compositional matrix adjust.
Identities = 20/47 (42%), Positives = 28/47 (59%), Gaps = 7/47 (14%)
Query: 300 KCTLCLSNRQDPT----ATPCGHVFCWNCIMEWCNEKPECPLCRAPI 342
+C +CL +DP+ A PC H FC+ CI W + P CPLC+ P+
Sbjct: 7 RCPICL---EDPSNYSMALPCLHAFCYVCITRWIRQNPTCPLCKVPV 50
>pdb|4A49|A Chain A, Structure Of Phosphotyr371-C-Cbl-Ubch5b Complex
Length = 84
Score = 43.9 bits (102), Expect = 1e-04, Method: Composition-based stats.
Identities = 17/43 (39%), Positives = 23/43 (53%), Gaps = 1/43 (2%)
Query: 301 CTLCLSNRQDPTATPCGHVFCWNCIMEWC-NEKPECPLCRAPI 342
C +C N +D PCGH+ C +C+ W +E CP CR I
Sbjct: 30 CKICAENDKDVKIEPCGHLMCTSCLTSWQESEGQGCPFCRCEI 72
>pdb|2K4D|A Chain A, E2-C-Cbl Recognition Is Necessary But Not Sufficient For
Ubiquitination Activity
Length = 83
Score = 43.9 bits (102), Expect = 1e-04, Method: Composition-based stats.
Identities = 17/43 (39%), Positives = 23/43 (53%), Gaps = 1/43 (2%)
Query: 301 CTLCLSNRQDPTATPCGHVFCWNCIMEWC-NEKPECPLCRAPI 342
C +C N +D PCGH+ C +C+ W +E CP CR I
Sbjct: 27 CKICAENDKDVKIEPCGHLMCTSCLTSWQESEGQGCPFCRCEI 69
>pdb|2LDR|A Chain A, Solution Structure Of Helix-Ring Domain Of Cbl-B In The
Tyr363 Phosphorylated Form
Length = 82
Score = 43.1 bits (100), Expect = 2e-04, Method: Composition-based stats.
Identities = 16/43 (37%), Positives = 22/43 (51%), Gaps = 1/43 (2%)
Query: 301 CTLCLSNRQDPTATPCGHVFCWNCIMEWCNEKPE-CPLCRAPI 342
C +C N +D PCGH+ C +C+ W + CP CR I
Sbjct: 29 CKICAENDKDVKIEPCGHLMCTSCLTAWQESDGQGCPFCRCEI 71
>pdb|4A4C|A Chain A, Structure Of Phosphotyr371-C-Cbl-Ubch5b-Zap-70 Complex
Length = 391
Score = 42.4 bits (98), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 17/43 (39%), Positives = 23/43 (53%), Gaps = 1/43 (2%)
Query: 301 CTLCLSNRQDPTATPCGHVFCWNCIMEWC-NEKPECPLCRAPI 342
C +C N +D PCGH+ C +C+ W +E CP CR I
Sbjct: 337 CKICAENDKDVKIEPCGHLMCTSCLTSWQESEGQGCPFCRCEI 379
>pdb|4A4B|A Chain A, Structure Of Modified Phosphotyr371-C-Cbl-Ubch5b-Zap-70
Complex
Length = 391
Score = 42.4 bits (98), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 17/43 (39%), Positives = 23/43 (53%), Gaps = 1/43 (2%)
Query: 301 CTLCLSNRQDPTATPCGHVFCWNCIMEWC-NEKPECPLCRAPI 342
C +C N +D PCGH+ C +C+ W +E CP CR I
Sbjct: 337 CKICAENDKDVKIEPCGHLMCTSCLTSWQESEGQGCPFCRCEI 379
>pdb|2Y1M|A Chain A, Structure Of Native C-Cbl
pdb|2Y1M|B Chain B, Structure Of Native C-Cbl
pdb|2Y1M|C Chain C, Structure Of Native C-Cbl
pdb|2Y1M|D Chain D, Structure Of Native C-Cbl
pdb|2Y1M|E Chain E, Structure Of Native C-Cbl
pdb|2Y1M|F Chain F, Structure Of Native C-Cbl
pdb|2Y1N|A Chain A, Structure Of C-Cbl-Zap-70 Peptide Complex
pdb|2Y1N|C Chain C, Structure Of C-Cbl-Zap-70 Peptide Complex
Length = 389
Score = 42.4 bits (98), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 17/43 (39%), Positives = 23/43 (53%), Gaps = 1/43 (2%)
Query: 301 CTLCLSNRQDPTATPCGHVFCWNCIMEWC-NEKPECPLCRAPI 342
C +C N +D PCGH+ C +C+ W +E CP CR I
Sbjct: 335 CKICAENDKDVKIEPCGHLMCTSCLTSWQESEGQGCPFCRCEI 377
>pdb|1FBV|A Chain A, Structure Of A Cbl-Ubch7 Complex: Ring Domain Function In
Ubiquitin-Protein Ligases
Length = 388
Score = 42.4 bits (98), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 17/43 (39%), Positives = 23/43 (53%), Gaps = 1/43 (2%)
Query: 301 CTLCLSNRQDPTATPCGHVFCWNCIMEWC-NEKPECPLCRAPI 342
C +C N +D PCGH+ C +C+ W +E CP CR I
Sbjct: 335 CKICAENDKDVKIEPCGHLMCTSCLTSWQESEGQGCPFCRCEI 377
>pdb|3VGO|A Chain A, Crystal Structure Of The N-Terminal Fragment Of Cbl-B
pdb|3VGO|B Chain B, Crystal Structure Of The N-Terminal Fragment Of Cbl-B
pdb|3VGO|C Chain C, Crystal Structure Of The N-Terminal Fragment Of Cbl-B
Length = 394
Score = 42.0 bits (97), Expect = 5e-04, Method: Compositional matrix adjust.
Identities = 16/43 (37%), Positives = 22/43 (51%), Gaps = 1/43 (2%)
Query: 301 CTLCLSNRQDPTATPCGHVFCWNCIMEWCNEKPE-CPLCRAPI 342
C +C N +D PCGH+ C +C+ W + CP CR I
Sbjct: 341 CKICAENDKDVKIEPCGHLMCTSCLTAWQESDGQGCPFCRCEI 383
>pdb|4AYC|B Chain B, Rnf8 Ring Domain Structure
Length = 138
Score = 42.0 bits (97), Expect = 6e-04, Method: Compositional matrix adjust.
Identities = 17/43 (39%), Positives = 21/43 (48%)
Query: 300 KCTLCLSNRQDPTATPCGHVFCWNCIMEWCNEKPECPLCRAPI 342
+C +C + C H FC CI EW K ECP+CR I
Sbjct: 55 QCIICSEYFIEAVTLNCAHSFCSYCINEWMKRKIECPICRKDI 97
>pdb|4AYC|A Chain A, Rnf8 Ring Domain Structure
Length = 138
Score = 41.2 bits (95), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 17/43 (39%), Positives = 21/43 (48%)
Query: 300 KCTLCLSNRQDPTATPCGHVFCWNCIMEWCNEKPECPLCRAPI 342
+C +C + C H FC CI EW K ECP+CR I
Sbjct: 55 QCIICSEYFIEAVTLNCAHSFCSYCINEWMKRKIECPICRKDI 97
>pdb|4EPO|C Chain C, Crystal Structure Of Rnf8 Bound To The Ubc13MMS2
HETERODIMER
pdb|4EPO|G Chain G, Crystal Structure Of Rnf8 Bound To The Ubc13MMS2
HETERODIMER
pdb|4EPO|H Chain H, Crystal Structure Of Rnf8 Bound To The Ubc13MMS2
HETERODIMER
pdb|4EPO|K Chain K, Crystal Structure Of Rnf8 Bound To The Ubc13MMS2
HETERODIMER
pdb|4EPO|L Chain L, Crystal Structure Of Rnf8 Bound To The Ubc13MMS2
HETERODIMER
Length = 149
Score = 40.8 bits (94), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 17/43 (39%), Positives = 21/43 (48%)
Query: 300 KCTLCLSNRQDPTATPCGHVFCWNCIMEWCNEKPECPLCRAPI 342
+C +C + C H FC CI EW K ECP+CR I
Sbjct: 66 QCIICSEYFIEAVTLNCAHSFCSYCINEWMKRKIECPICRKDI 108
>pdb|2KIZ|A Chain A, Solution Structure Of Arkadia Ring-H2 Finger Domain
Length = 69
Score = 40.8 bits (94), Expect = 0.001, Method: Composition-based stats.
Identities = 18/46 (39%), Positives = 25/46 (54%), Gaps = 3/46 (6%)
Query: 300 KCTLCLS---NRQDPTATPCGHVFCWNCIMEWCNEKPECPLCRAPI 342
KCT+CLS +D PC H+F C+ +W +CP+CR I
Sbjct: 16 KCTICLSILEEGEDVRRLPCMHLFHQVCVDQWLITNKKCPICRVDI 61
>pdb|2EP4|A Chain A, Solution Structure Of Ring Finger From Human Ring Finger
Protein 24
Length = 74
Score = 39.3 bits (90), Expect = 0.004, Method: Composition-based stats.
Identities = 15/45 (33%), Positives = 23/45 (51%), Gaps = 3/45 (6%)
Query: 301 CTLCLSN---RQDPTATPCGHVFCWNCIMEWCNEKPECPLCRAPI 342
C +CL + R + PC H F C+++W + CPLC P+
Sbjct: 18 CAVCLEDFKPRDELGICPCKHAFHRKCLIKWLEVRKVCPLCNMPV 62
>pdb|2EA6|A Chain A, Solution Structure Of The Ring Domain Of The Human Ring
Finger Protein 4
Length = 69
Score = 39.3 bits (90), Expect = 0.004, Method: Composition-based stats.
Identities = 18/55 (32%), Positives = 24/55 (43%), Gaps = 7/55 (12%)
Query: 297 GVSKCTLCL-------SNRQDPTATPCGHVFCWNCIMEWCNEKPECPLCRAPITH 344
G C +C+ N + +T CGHVFC C+ + CP CR I H
Sbjct: 14 GTVSCPICMDGYSEIVQNGRLIVSTECGHVFCSQCLRDSLKNANTCPTCRKKINH 68
>pdb|3NG2|A Chain A, Crystal Structure Of The Rnf4 Ring Domain Dimer
pdb|3NG2|B Chain B, Crystal Structure Of The Rnf4 Ring Domain Dimer
Length = 71
Score = 38.9 bits (89), Expect = 0.004, Method: Composition-based stats.
Identities = 19/62 (30%), Positives = 26/62 (41%), Gaps = 7/62 (11%)
Query: 297 GVSKCTLCL-------SNRQDPTATPCGHVFCWNCIMEWCNEKPECPLCRAPITHSSLVC 349
G C +C+ N + +T CGHVFC C+ + CP CR I H
Sbjct: 9 GTVSCPICMDGYSEIVQNGRLIVSTECGHVFCSQCLRDSLKNANTCPTCRKKINHKRYHP 68
Query: 350 LY 351
+Y
Sbjct: 69 IY 70
>pdb|2ECJ|A Chain A, Solution Structure Of The Ring Domain Of The Human
Tripartite Motif-Containing Protein 39
Length = 58
Score = 38.5 bits (88), Expect = 0.006, Method: Composition-based stats.
Identities = 15/43 (34%), Positives = 22/43 (51%), Gaps = 3/43 (6%)
Query: 299 SKCTLCLSNRQDPTATPCGHVFCWNCIMEWCNEKPE---CPLC 338
+ C++CL ++P CGH FC CI W + CP+C
Sbjct: 16 ASCSVCLEYLKEPVIIECGHNFCKACITRWWEDLERDFPCPVC 58
>pdb|2YSL|A Chain A, Solution Structure Of The Ring Domain (1-66) From
Tripartite Motif-containing Protein 31
Length = 73
Score = 38.5 bits (88), Expect = 0.006, Method: Composition-based stats.
Identities = 16/50 (32%), Positives = 24/50 (48%), Gaps = 3/50 (6%)
Query: 301 CTLCLSNRQDPTATPCGHVFCWNCIMEWCNEKP---ECPLCRAPITHSSL 347
C +CL Q P CGH FC CI + +CPLC+ + +++
Sbjct: 23 CPICLDILQKPVTIDCGHNFCLKCITQIGETSCGFFKCPLCKTSVRKNAI 72
>pdb|2XEU|A Chain A, Ring Domain
Length = 64
Score = 38.1 bits (87), Expect = 0.008, Method: Composition-based stats.
Identities = 18/58 (31%), Positives = 25/58 (43%), Gaps = 7/58 (12%)
Query: 301 CTLCL-------SNRQDPTATPCGHVFCWNCIMEWCNEKPECPLCRAPITHSSLVCLY 351
C +C+ N + +T CGHVFC C+ + CP CR I H +Y
Sbjct: 6 CPICMDGYSEIVQNGRLIVSTECGHVFCSQCLRDSLKNANTCPTCRKKINHKRYHPIY 63
>pdb|2ECW|A Chain A, Solution Structure Of The Zinc Finger, C3hc4 Type (Ring
Finger) Domain Tripartite Motif Protein 30
Length = 85
Score = 37.4 bits (85), Expect = 0.012, Method: Composition-based stats.
Identities = 17/53 (32%), Positives = 24/53 (45%), Gaps = 6/53 (11%)
Query: 301 CTLCLSNRQDPTATPCGHVFCWNCIM------EWCNEKPECPLCRAPITHSSL 347
C +CL ++P + C H FC CI + K CP+CR P +L
Sbjct: 22 CPICLELLKEPVSADCNHSFCRACITLNYESNRNTDGKGNCPVCRVPYPFGNL 74
>pdb|2YSJ|A Chain A, Solution Structure Of The Ring Domain (1-56) From
Tripartite Motif-containing Protein 31
Length = 63
Score = 36.2 bits (82), Expect = 0.028, Method: Composition-based stats.
Identities = 16/41 (39%), Positives = 19/41 (46%), Gaps = 3/41 (7%)
Query: 301 CTLCLSNRQDPTATPCGHVFCWNCIMEWCNEKP---ECPLC 338
C +CL Q P CGH FC CI + +CPLC
Sbjct: 23 CPICLDILQKPVTIDCGHNFCLKCITQIGETSCGFFKCPLC 63
>pdb|2D8T|A Chain A, Solution Structure Of The Ring Domain Of The Human Ring
Finger Protein 146
Length = 71
Score = 35.4 bits (80), Expect = 0.048, Method: Compositional matrix adjust.
Identities = 22/60 (36%), Positives = 30/60 (50%), Gaps = 6/60 (10%)
Query: 287 TSTSESQAAPG--VSKCTLCLSNRQDPTATPCGHVFCWNCI--MEWCNEKPECPLCRAPI 342
+S S AP V +C +CL P + PC HVFC+ C+ W ++ C LCR I
Sbjct: 2 SSGSSGNTAPSLTVPECAICLQTCVHPVSLPCKHVFCYLCVKGASWLGKR--CALCRQEI 59
>pdb|3HCT|A Chain A, Crystal Structure Of Traf6 In Complex With Ubc13 In The P1
Space Group
pdb|3HCU|A Chain A, Crystal Structure Of Traf6 In Complex With Ubc13 In The C2
Space Group
pdb|3HCU|C Chain C, Crystal Structure Of Traf6 In Complex With Ubc13 In The C2
Space Group
Length = 118
Score = 35.0 bits (79), Expect = 0.062, Method: Composition-based stats.
Identities = 14/39 (35%), Positives = 23/39 (58%), Gaps = 1/39 (2%)
Query: 300 KCTLCLSNRQDPTATPCGHVFCWNCIMEWCNEKP-ECPL 337
+C +CL ++ TPCGH FC CI++ + +CP+
Sbjct: 20 ECPICLMALREAVQTPCGHRFCKACIIKSIRDAGHKCPV 58
>pdb|1IYM|A Chain A, Ring-H2 Finger Domain Of El5
Length = 55
Score = 35.0 bits (79), Expect = 0.064, Method: Composition-based stats.
Identities = 15/44 (34%), Positives = 20/44 (45%), Gaps = 4/44 (9%)
Query: 300 KCTLCLSNRQDPTATP----CGHVFCWNCIMEWCNEKPECPLCR 339
+C +CL+ +D CGH F C+ W CPLCR
Sbjct: 7 ECAVCLAELEDGEEARFLPRCGHGFHAECVDMWLGSHSTCPLCR 50
>pdb|4AP4|A Chain A, Rnf4 - Ubch5a - Ubiquitin Heterotrimeric Complex
Length = 133
Score = 35.0 bits (79), Expect = 0.068, Method: Compositional matrix adjust.
Identities = 18/55 (32%), Positives = 24/55 (43%), Gaps = 7/55 (12%)
Query: 297 GVSKCTLCLS-------NRQDPTATPCGHVFCWNCIMEWCNEKPECPLCRAPITH 344
G C +C+ N + +T CGHVFC C+ + CP CR I H
Sbjct: 6 GTVSCPICMDGYSEIVQNGRLIVSTECGHVFCSQCLRDSLKNANTCPTCRKKINH 60
Score = 35.0 bits (79), Expect = 0.068, Method: Compositional matrix adjust.
Identities = 18/55 (32%), Positives = 24/55 (43%), Gaps = 7/55 (12%)
Query: 297 GVSKCTLCLS-------NRQDPTATPCGHVFCWNCIMEWCNEKPECPLCRAPITH 344
G C +C+ N + +T CGHVFC C+ + CP CR I H
Sbjct: 71 GTVSCPICMDGYSEIVQNGRLIVSTECGHVFCSQCLRDSLKNANTCPTCRKKINH 125
>pdb|2CSY|A Chain A, Solution Structure Of The Ring Domain Of The Zinc Finger
Protein 183-Like 1
Length = 81
Score = 35.0 bits (79), Expect = 0.071, Method: Compositional matrix adjust.
Identities = 15/42 (35%), Positives = 21/42 (50%)
Query: 300 KCTLCLSNRQDPTATPCGHVFCWNCIMEWCNEKPECPLCRAP 341
+C +C Q+P T C H FC +C +E P C +C P
Sbjct: 17 RCFICRQAFQNPVVTKCRHYFCESCALEHFRATPRCYICDQP 58
>pdb|2ECI|A Chain A, Solution Structure Of The Ring Domain Of The Human Tnf
Receptor-Associated Factor 6 Protein
Length = 86
Score = 34.7 bits (78), Expect = 0.087, Method: Composition-based stats.
Identities = 14/39 (35%), Positives = 23/39 (58%), Gaps = 1/39 (2%)
Query: 300 KCTLCLSNRQDPTATPCGHVFCWNCIMEWCNEKP-ECPL 337
+C +CL ++ TPCGH FC CI++ + +CP+
Sbjct: 27 ECPICLMALREAVQTPCGHRFCKACIIKSIRDAGHKCPV 65
>pdb|2JMD|A Chain A, Solution Structure Of The Ring Domain Of Human Traf6
Length = 63
Score = 34.7 bits (78), Expect = 0.087, Method: Composition-based stats.
Identities = 14/39 (35%), Positives = 23/39 (58%), Gaps = 1/39 (2%)
Query: 300 KCTLCLSNRQDPTATPCGHVFCWNCIMEWCNEKP-ECPL 337
+C +CL ++ TPCGH FC CI++ + +CP+
Sbjct: 8 ECPICLMALREAVQTPCGHRFCKACIIKSIRDAGHKCPV 46
>pdb|1RMD|A Chain A, Rag1 Dimerization Domain
Length = 116
Score = 34.7 bits (78), Expect = 0.089, Method: Composition-based stats.
Identities = 16/42 (38%), Positives = 19/42 (45%), Gaps = 1/42 (2%)
Query: 301 CTLCLSNRQDPTATPCGHVFCWNCIMEWCNEKPE-CPLCRAP 341
C +C DP T C H+FC CI+ CP CR P
Sbjct: 26 CQICEHILADPVETSCKHLFCRICILRCLKVMGSYCPSCRYP 67
>pdb|2Y43|A Chain A, Rad18 Ubiquitin Ligase Ring Domain Structure
pdb|2Y43|B Chain B, Rad18 Ubiquitin Ligase Ring Domain Structure
Length = 99
Score = 34.3 bits (77), Expect = 0.11, Method: Composition-based stats.
Identities = 19/70 (27%), Positives = 31/70 (44%), Gaps = 10/70 (14%)
Query: 288 STSESQAAPGVS---------KCTLCLSNRQDPTATP-CGHVFCWNCIMEWCNEKPECPL 337
S +ES+ PG++ +C +C P C H +C CI ++ + K +CP
Sbjct: 3 SLAESRWPPGLAVMKTIDDLLRCGICFEYFNIAMIIPQCSHNYCSLCIRKFLSYKTQCPT 62
Query: 338 CRAPITHSSL 347
C +T L
Sbjct: 63 CCVTVTEPDL 72
>pdb|3LRQ|A Chain A, Crystal Structure Of The U-Box Domain Of Human Ubiquitin-
Protein Ligase (E3), Northeast Structural Genomics
Consortium Target Hr4604d.
pdb|3LRQ|B Chain B, Crystal Structure Of The U-Box Domain Of Human Ubiquitin-
Protein Ligase (E3), Northeast Structural Genomics
Consortium Target Hr4604d.
pdb|3LRQ|C Chain C, Crystal Structure Of The U-Box Domain Of Human Ubiquitin-
Protein Ligase (E3), Northeast Structural Genomics
Consortium Target Hr4604d.
pdb|3LRQ|D Chain D, Crystal Structure Of The U-Box Domain Of Human Ubiquitin-
Protein Ligase (E3), Northeast Structural Genomics
Consortium Target Hr4604d
Length = 100
Score = 33.9 bits (76), Expect = 0.13, Method: Compositional matrix adjust.
Identities = 19/53 (35%), Positives = 28/53 (52%), Gaps = 2/53 (3%)
Query: 298 VSKCTLCLSNRQDPTATP-CGHVFCWNCIMEWCNE-KPECPLCRAPITHSSLV 348
V +C +C +D P C + C++CI W E + +CP CRAP+ LV
Sbjct: 22 VFRCFICXEKLRDARLCPHCSKLCCFSCIRRWLTEQRAQCPHCRAPLQLRELV 74
>pdb|3BDR|A Chain A, Crystal Structure Of Fatty Acid-Binding Protein-Like Ycf58
From Thermosynecoccus Elongatus. Northeast Structural
Genomics Consortium Target Ter13
Length = 190
Score = 32.7 bits (73), Expect = 0.29, Method: Compositional matrix adjust.
Identities = 15/40 (37%), Positives = 16/40 (40%)
Query: 303 LCLSNRQDPTATPCGHVFCWNCIMEWCNEKPECPLCRAPI 342
LC DP CG W+ EW NEK E PI
Sbjct: 54 LCQQYDXDPAWAVCGARVSWDGTXEWDNEKHEGSTVLVPI 93
>pdb|2ECT|A Chain A, Solution Structure Of The Zinc Finger, C3hc4 Type (Ring
Finger) Domain Of Ring Finger Protein 126
Length = 78
Score = 32.7 bits (73), Expect = 0.31, Method: Compositional matrix adjust.
Identities = 12/29 (41%), Positives = 18/29 (62%)
Query: 315 PCGHVFCWNCIMEWCNEKPECPLCRAPIT 343
PC H+F +CI+ W + CP+CR +T
Sbjct: 35 PCNHLFHDSCIVPWLEQHDSCPVCRKSLT 63
>pdb|1JM7|B Chain B, Solution Structure Of The Brca1/bard1 Ring-domain
Heterodimer
Length = 117
Score = 32.3 bits (72), Expect = 0.47, Method: Composition-based stats.
Identities = 17/63 (26%), Positives = 26/63 (41%), Gaps = 4/63 (6%)
Query: 279 KGGWVLDSTSTSESQAAPGVSKCTLCLSNRQDPTATPCGHVFCWNCIMEWCNEKPECPLC 338
+G W + + S+CT L R+ C H+FC NC+ + CP+C
Sbjct: 6 RGAWAHSRAALDRLEKLLRCSRCTNIL--REPVCLGGCEHIFCSNCVSDCIGTG--CPVC 61
Query: 339 RAP 341
P
Sbjct: 62 YTP 64
>pdb|2ECV|A Chain A, Solution Structure Of The Zinc Finger, C3hc4 Type (Ring
Finger) Domain Of Tripartite Motif-Containing Protein 5
Length = 85
Score = 32.3 bits (72), Expect = 0.47, Method: Composition-based stats.
Identities = 16/47 (34%), Positives = 20/47 (42%), Gaps = 10/47 (21%)
Query: 301 CTLCLSNRQDPTATPCGHVFCWNCIMEWCNEK--------PECPLCR 339
C +CL P + CGH FC C+ N K CP+CR
Sbjct: 22 CPICLELLTQPLSLDCGHSFCQACLT--ANHKKSMLDKGESSCPVCR 66
>pdb|3K7H|B Chain B, Crystal Structure Of The E95k Mutant Of The Indian
Hedgehog N-Terminal Signalling Domain
Length = 187
Score = 31.6 bits (70), Expect = 0.70, Method: Compositional matrix adjust.
Identities = 34/132 (25%), Positives = 57/132 (43%), Gaps = 21/132 (15%)
Query: 80 CDITQVVGPQRLPPTPARRALFIVYQTAVPYIAERI-----RYN---AAGSSRDQSLETI 131
C +VVG +R PP R+ + + Y+ P + E+ RY A S R + L
Sbjct: 13 CGPGRVVGSRRRPP---RKLVPLAYKQFSPNVPEKTLGASGRYEGKIARSSERFKELTPN 69
Query: 132 ESP--------SSSAPRVYSAVSRLKEKLNGLRLYVIRRWPMVLPIVREFLQLVLRANLM 183
+P ++ A R+ + R K++LN L + V+ +WP V V E +
Sbjct: 70 YNPDIIFKDEKNTGADRLMT--QRCKDRLNSLAISVMNQWPGVKLRVTEGWDEDGHHSEE 127
Query: 184 FFYFEGLYYHIS 195
++EG I+
Sbjct: 128 SLHYEGRAVDIT 139
>pdb|3K7G|B Chain B, Crystal Structure Of The Indian Hedgehog N-Terminal
Signalling Domain
Length = 187
Score = 31.6 bits (70), Expect = 0.71, Method: Compositional matrix adjust.
Identities = 34/132 (25%), Positives = 57/132 (43%), Gaps = 21/132 (15%)
Query: 80 CDITQVVGPQRLPPTPARRALFIVYQTAVPYIAERI-----RYN---AAGSSRDQSLETI 131
C +VVG +R PP R+ + + Y+ P + E+ RY A S R + L
Sbjct: 13 CGPGRVVGSRRRPP---RKLVPLAYKQFSPNVPEKTLGASGRYEGKIARSSERFKELTPN 69
Query: 132 ESP--------SSSAPRVYSAVSRLKEKLNGLRLYVIRRWPMVLPIVREFLQLVLRANLM 183
+P ++ A R+ + R K++LN L + V+ +WP V V E +
Sbjct: 70 YNPDIIFKDEENTGADRLMT--QRCKDRLNSLAISVMNQWPGVKLRVTEGWDEDGHHSEE 127
Query: 184 FFYFEGLYYHIS 195
++EG I+
Sbjct: 128 SLHYEGRAVDIT 139
>pdb|3K7J|B Chain B, Crystal Structure Of The D100e Mutant Of The Indian
Hedgehog N- Terminal Signalling Domain
Length = 187
Score = 31.6 bits (70), Expect = 0.75, Method: Compositional matrix adjust.
Identities = 34/132 (25%), Positives = 57/132 (43%), Gaps = 21/132 (15%)
Query: 80 CDITQVVGPQRLPPTPARRALFIVYQTAVPYIAERI-----RYN---AAGSSRDQSLETI 131
C +VVG +R PP R+ + + Y+ P + E+ RY A S R + L
Sbjct: 13 CGPGRVVGSRRRPP---RKLVPLAYKQFSPNVPEKTLGASGRYEGKIARSSERFKELTPN 69
Query: 132 ESP--------SSSAPRVYSAVSRLKEKLNGLRLYVIRRWPMVLPIVREFLQLVLRANLM 183
+P ++ A R+ + R K++LN L + V+ +WP V V E +
Sbjct: 70 YNPDIIFKDEENTGAERLMT--QRCKDRLNSLAISVMNQWPGVKLRVTEGWDEDGHHSEE 127
Query: 184 FFYFEGLYYHIS 195
++EG I+
Sbjct: 128 SLHYEGRAVDIT 139
>pdb|3HCS|A Chain A, Crystal Structure Of The N-Terminal Domain Of Traf6
pdb|3HCS|B Chain B, Crystal Structure Of The N-Terminal Domain Of Traf6
Length = 170
Score = 31.2 bits (69), Expect = 0.99, Method: Compositional matrix adjust.
Identities = 12/28 (42%), Positives = 18/28 (64%)
Query: 300 KCTLCLSNRQDPTATPCGHVFCWNCIME 327
+C +CL ++ TPCGH FC CI++
Sbjct: 20 ECPICLMALREAVQTPCGHRFCKACIIK 47
>pdb|2ECM|A Chain A, Solution Structure Of The Ring Domain Of The Ring Finger
And Chy Zinc Finger Domain-Containing Protein 1 From Mus
Musculus
Length = 55
Score = 31.2 bits (69), Expect = 1.0, Method: Compositional matrix adjust.
Identities = 18/52 (34%), Positives = 23/52 (44%), Gaps = 4/52 (7%)
Query: 294 AAPGVSKCTLCL----SNRQDPTATPCGHVFCWNCIMEWCNEKPECPLCRAP 341
+ G S C +CL ++R PCGH+ C E E CPLC P
Sbjct: 1 GSSGSSGCPICLEDIHTSRVVAHVLPCGHLLHRTCYEEMLKEGYRCPLCSGP 52
>pdb|3RPG|B Chain B, Bmi1RING1B-Ubch5c Complex Structure
Length = 117
Score = 30.8 bits (68), Expect = 1.1, Method: Composition-based stats.
Identities = 14/39 (35%), Positives = 17/39 (43%), Gaps = 1/39 (2%)
Query: 301 CTLCLSNRQDPTAT-PCGHVFCWNCIMEWCNEKPECPLC 338
C LC D T C H FC CI+ + CP+C
Sbjct: 18 CVLCGGYFIDATTIIECLHSFCKTCIVRYLETSKYCPIC 56
>pdb|2H0D|A Chain A, Structure Of A Bmi-1-Ring1b Polycomb Group Ubiquitin
Ligase Complex
Length = 97
Score = 30.8 bits (68), Expect = 1.1, Method: Composition-based stats.
Identities = 14/39 (35%), Positives = 17/39 (43%), Gaps = 1/39 (2%)
Query: 301 CTLCLSNRQDPTAT-PCGHVFCWNCIMEWCNEKPECPLC 338
C LC D T C H FC CI+ + CP+C
Sbjct: 14 CVLCGGYFIDATTIIECLHSFCKTCIVRYLETSKYCPIC 52
>pdb|2CKL|A Chain A, Ring1b-Bmi1 E3 Catalytic Domain Structure
Length = 108
Score = 30.8 bits (68), Expect = 1.2, Method: Composition-based stats.
Identities = 14/39 (35%), Positives = 17/39 (43%), Gaps = 1/39 (2%)
Query: 301 CTLCLSNRQDPTAT-PCGHVFCWNCIMEWCNEKPECPLC 338
C LC D T C H FC CI+ + CP+C
Sbjct: 18 CVLCGGYFIDATTIIECLHSFCKTCIVRYLETSKYCPIC 56
>pdb|1X4J|A Chain A, Solution Structure Of Ring Finger In Ring Finger Protein
38
Length = 75
Score = 30.8 bits (68), Expect = 1.2, Method: Compositional matrix adjust.
Identities = 15/43 (34%), Positives = 21/43 (48%), Gaps = 3/43 (6%)
Query: 301 CTLCLSN---RQDPTATPCGHVFCWNCIMEWCNEKPECPLCRA 340
C +C+ + RQ PC H F C+ +W CP+CRA
Sbjct: 26 CVVCMCDFESRQLLRVLPCNHEFHAKCVDKWLKANRTCPICRA 68
>pdb|3K7I|B Chain B, Crystal Structure Of The E131k Mutant Of The Indian
Hedgehog N- Terminal Signalling Domain
Length = 187
Score = 30.8 bits (68), Expect = 1.2, Method: Compositional matrix adjust.
Identities = 29/103 (28%), Positives = 48/103 (46%), Gaps = 21/103 (20%)
Query: 80 CDITQVVGPQRLPPTPARRALFIVYQTAVPYIAERI-----RYN---AAGSSRDQSLETI 131
C +VVG +R PP R+ + + Y+ P + E+ RY A S R + L
Sbjct: 13 CGPGRVVGSRRRPP---RKLVPLAYKQFSPNVPEKTLGASGRYEGKIARSSERFKELTPN 69
Query: 132 ESP--------SSSAPRVYSAVSRLKEKLNGLRLYVIRRWPMV 166
+P ++ A R+ + R K++LN L + V+ +WP V
Sbjct: 70 YNPDIIFKDEENTGADRLMT--QRCKDRLNSLAISVMNQWPGV 110
>pdb|4AUQ|B Chain B, Structure Of Birc7-Ubch5b-Ub Complex.
pdb|4AUQ|E Chain E, Structure Of Birc7-Ubch5b-Ub Complex
Length = 62
Score = 30.8 bits (68), Expect = 1.3, Method: Compositional matrix adjust.
Identities = 15/42 (35%), Positives = 19/42 (45%), Gaps = 4/42 (9%)
Query: 301 CTLCLSNRQDPTATPCGHVFCWNCIMEWCNEKPECPLCRAPI 342
C +CL PCGH+ C C CP+CRAP+
Sbjct: 16 CKVCLDRAVSIVFVPCGHLVCAECAPGL----QLCPICRAPV 53
>pdb|2ECY|A Chain A, Solution Structure Of The Zinc Finger, C3hc4 Type (Ring
Finger)" Domain Of Tnf Receptor-Associated Factor 3
Length = 66
Score = 30.8 bits (68), Expect = 1.3, Method: Composition-based stats.
Identities = 15/44 (34%), Positives = 20/44 (45%), Gaps = 1/44 (2%)
Query: 300 KCTLCLSNRQDPTATPCGHVFCWNCIME-WCNEKPECPLCRAPI 342
KC C P T CGH FC +C+ + P+C C+ I
Sbjct: 17 KCEKCHLVLCSPKQTECGHRFCESCMAALLSSSSPKCTACQESI 60
>pdb|1U6G|B Chain B, Crystal Structure Of The Cand1-Cul1-Roc1 Complex
pdb|2HYE|D Chain D, Crystal Structure Of The Ddb1-cul4a-rbx1-sv5v Complex
Length = 108
Score = 30.8 bits (68), Expect = 1.3, Method: Composition-based stats.
Identities = 13/44 (29%), Positives = 19/44 (43%), Gaps = 7/44 (15%)
Query: 301 CTLCLSNRQDPTATPC-------GHVFCWNCIMEWCNEKPECPL 337
C C +N+ T+ C H F ++CI W + CPL
Sbjct: 53 CIECQANQASATSEECTVAWGVCNHAFHFHCISRWLKTRQVCPL 96
>pdb|4A0K|B Chain B, Structure Of Ddb1-Ddb2-Cul4a-Rbx1 Bound To A 12 Bp Abasic
Site Containing Dna-Duplex
Length = 117
Score = 30.8 bits (68), Expect = 1.3, Method: Composition-based stats.
Identities = 13/44 (29%), Positives = 19/44 (43%), Gaps = 7/44 (15%)
Query: 301 CTLCLSNRQDPTATPC-------GHVFCWNCIMEWCNEKPECPL 337
C C +N+ T+ C H F ++CI W + CPL
Sbjct: 62 CIECQANQASATSEECTVAWGVCNHAFHFHCISRWLKTRQVCPL 105
>pdb|4A0C|D Chain D, Structure Of The Cand1-Cul4b-Rbx1 Complex
pdb|4A0C|F Chain F, Structure Of The Cand1-Cul4b-Rbx1 Complex
pdb|4A0L|F Chain F, Structure Of Ddb1-Ddb2-Cul4b-Rbx1 Bound To A 12 Bp Abasic
Site Containing Dna-Duplex
pdb|4A0L|I Chain I, Structure Of Ddb1-Ddb2-Cul4b-Rbx1 Bound To A 12 Bp Abasic
Site Containing Dna-Duplex
Length = 98
Score = 30.8 bits (68), Expect = 1.3, Method: Composition-based stats.
Identities = 13/44 (29%), Positives = 19/44 (43%), Gaps = 7/44 (15%)
Query: 301 CTLCLSNRQDPTATPC-------GHVFCWNCIMEWCNEKPECPL 337
C C +N+ T+ C H F ++CI W + CPL
Sbjct: 43 CIECQANQASATSEECTVAWGVCNHAFHFHCISRWLKTRQVCPL 86
>pdb|3DPL|R Chain R, Structural Insights Into Nedd8 Activation Of Cullin-Ring
Ligases: Conformational Control Of Conjugation.
pdb|3RTR|B Chain B, A Ring E3-Substrate Complex Poised For Ubiquitin-Like
Protein Transfer: Structural Insights Into Cullin-Ring
Ligases
pdb|3RTR|D Chain D, A Ring E3-Substrate Complex Poised For Ubiquitin-Like
Protein Transfer: Structural Insights Into Cullin-Ring
Ligases
pdb|3RTR|F Chain F, A Ring E3-Substrate Complex Poised For Ubiquitin-Like
Protein Transfer: Structural Insights Into Cullin-Ring
Ligases
pdb|3RTR|H Chain H, A Ring E3-Substrate Complex Poised For Ubiquitin-Like
Protein Transfer: Structural Insights Into Cullin-Ring
Ligases
pdb|4F52|B Chain B, Structure Of A Glomulin-Rbx1-Cul1 Complex
pdb|4F52|D Chain D, Structure Of A Glomulin-Rbx1-Cul1 Complex
Length = 106
Score = 30.8 bits (68), Expect = 1.3, Method: Composition-based stats.
Identities = 13/44 (29%), Positives = 19/44 (43%), Gaps = 7/44 (15%)
Query: 301 CTLCLSNRQDPTATPC-------GHVFCWNCIMEWCNEKPECPL 337
C C +N+ T+ C H F ++CI W + CPL
Sbjct: 51 CIECQANQASATSEECTVAWGVCNHAFHFHCISRWLKTRQVCPL 94
>pdb|1LDJ|B Chain B, Structure Of The Cul1-rbx1-skp1-f Boxskp2 Scf Ubiquitin
Ligase Complex
pdb|1LDK|C Chain C, Structure Of The Cul1-Rbx1-Skp1-F Boxskp2 Scf Ubiquitin
Ligase Complex
Length = 90
Score = 30.4 bits (67), Expect = 1.4, Method: Composition-based stats.
Identities = 13/44 (29%), Positives = 19/44 (43%), Gaps = 7/44 (15%)
Query: 301 CTLCLSNRQDPTATPC-------GHVFCWNCIMEWCNEKPECPL 337
C C +N+ T+ C H F ++CI W + CPL
Sbjct: 35 CIECQANQASATSEECTVAWGVCNHAFHFHCISRWLKTRQVCPL 78
>pdb|3DQV|R Chain R, Structural Insights Into Nedd8 Activation Of Cullin-Ring
Ligases: Conformational Control Of Conjugation
pdb|3DQV|Y Chain Y, Structural Insights Into Nedd8 Activation Of Cullin-Ring
Ligases: Conformational Control Of Conjugation
Length = 106
Score = 30.4 bits (67), Expect = 1.4, Method: Composition-based stats.
Identities = 13/44 (29%), Positives = 19/44 (43%), Gaps = 7/44 (15%)
Query: 301 CTLCLSNRQDPTATPC-------GHVFCWNCIMEWCNEKPECPL 337
C C +N+ T+ C H F ++CI W + CPL
Sbjct: 51 CIECQANQASATSEECTVAWGVCNHAFHFHCISRWLKTRQVCPL 94
>pdb|2L0B|A Chain A, Solution Nmr Structure Of Zinc Finger Domain Of E3
Ubiquitin-Protein Ligase Praja-1 From Homo Sapiens,
Northeast Structural Genomics Consortium (Nesg) Target
Hr4710b
Length = 91
Score = 30.4 bits (67), Expect = 1.6, Method: Composition-based stats.
Identities = 14/42 (33%), Positives = 18/42 (42%), Gaps = 3/42 (7%)
Query: 301 CTLCLSNRQD---PTATPCGHVFCWNCIMEWCNEKPECPLCR 339
C +C S T PC H F C+ W + CP+CR
Sbjct: 43 CPICCSEYVKGDVATELPCHHYFHKPCVSIWLQKSGTCPVCR 84
>pdb|3VK6|A Chain A, Crystal Structure Of A Phosphotyrosine Binding Domain
Length = 101
Score = 30.4 bits (67), Expect = 1.7, Method: Composition-based stats.
Identities = 12/29 (41%), Positives = 16/29 (55%), Gaps = 1/29 (3%)
Query: 315 PCGHVFCWNC-IMEWCNEKPECPLCRAPI 342
PC HVFC++C I+ CP C P+
Sbjct: 19 PCKHVFCYDCAILHEKKGDKMCPGCSDPV 47
>pdb|2LGV|A Chain A, Rbx1
Length = 100
Score = 30.0 bits (66), Expect = 1.8, Method: Composition-based stats.
Identities = 13/44 (29%), Positives = 19/44 (43%), Gaps = 7/44 (15%)
Query: 301 CTLCLSNRQDPTATPC-------GHVFCWNCIMEWCNEKPECPL 337
C C +N+ T+ C H F ++CI W + CPL
Sbjct: 45 CIECQANQASATSEECTVAWGVCNHAFHFHCISRWLKTRQVCPL 88
>pdb|3RQS|A Chain A, Crystal Structure Of Human L-3- Hydroxyacyl-Coa
Dehydrogenase (Ec1.1.1.35) From Mitochondria At The
Resolution 2.0 A, Northeast Structural Genomics
Consortium Target Hr487, Mitochondrial Protein
Partnership
pdb|3RQS|B Chain B, Crystal Structure Of Human L-3- Hydroxyacyl-Coa
Dehydrogenase (Ec1.1.1.35) From Mitochondria At The
Resolution 2.0 A, Northeast Structural Genomics
Consortium Target Hr487, Mitochondrial Protein
Partnership
Length = 324
Score = 30.0 bits (66), Expect = 1.9, Method: Compositional matrix adjust.
Identities = 21/75 (28%), Positives = 36/75 (48%), Gaps = 7/75 (9%)
Query: 58 VGQMLYYVLTTGSGQQTLGEEYCDITQVVG--PQRLPPTPARRALFIVYQTAVPYIAERI 115
V +++ + T + Q+T E D ++ +G P TP FIV + VPY+ E I
Sbjct: 187 VXKLVEVIKTPXTSQKTF-ESLVDFSKALGKHPVSCKDTPG----FIVNRLLVPYLXEAI 241
Query: 116 RYNAAGSSRDQSLET 130
R G + + ++T
Sbjct: 242 RLYERGDASKEDIDT 256
>pdb|2HDH|A Chain A, Biochemical Characterization And Structure Determination
Of Human Heart Short Chain L-3-Hydroxyacyl Coa
Dehydrogenase Provide Insight Into Catalytic Mechanism
pdb|2HDH|B Chain B, Biochemical Characterization And Structure Determination
Of Human Heart Short Chain L-3-Hydroxyacyl Coa
Dehydrogenase Provide Insight Into Catalytic Mechanism
Length = 293
Score = 30.0 bits (66), Expect = 1.9, Method: Compositional matrix adjust.
Identities = 21/75 (28%), Positives = 36/75 (48%), Gaps = 7/75 (9%)
Query: 58 VGQMLYYVLTTGSGQQTLGEEYCDITQVVG--PQRLPPTPARRALFIVYQTAVPYIAERI 115
V +++ + T + Q+T E D ++ +G P TP FIV + VPY+ E I
Sbjct: 154 VXKLVEVIKTPXTSQKTF-ESLVDFSKALGKHPVSCKDTPG----FIVNRLLVPYLXEAI 208
Query: 116 RYNAAGSSRDQSLET 130
R G + + ++T
Sbjct: 209 RLYERGDASKEDIDT 223
>pdb|3HDH|A Chain A, Pig Heart Short Chain L-3-Hydroxyacyl Coa Dehydrogenase
Revisited: Sequence Analysis And Crystal Structure
Determination
pdb|3HDH|B Chain B, Pig Heart Short Chain L-3-Hydroxyacyl Coa Dehydrogenase
Revisited: Sequence Analysis And Crystal Structure
Determination
pdb|3HDH|C Chain C, Pig Heart Short Chain L-3-Hydroxyacyl Coa Dehydrogenase
Revisited: Sequence Analysis And Crystal Structure
Determination
Length = 302
Score = 30.0 bits (66), Expect = 2.3, Method: Compositional matrix adjust.
Identities = 21/73 (28%), Positives = 36/73 (49%), Gaps = 7/73 (9%)
Query: 60 QMLYYVLTTGSGQQTLGEEYCDITQVVG--PQRLPPTPARRALFIVYQTAVPYIAERIRY 117
+++ V T + Q+TL E D ++ +G P TP FIV + VPY+ E +R
Sbjct: 167 KLVEVVKTPMTSQKTL-ESLVDFSKTLGKHPVSCKDTPG----FIVNRLLVPYLIEAVRL 221
Query: 118 NAAGSSRDQSLET 130
G + + ++T
Sbjct: 222 YERGDASKEDIDT 234
>pdb|3N1F|A Chain A, Crystal Structure Of Ihhn Bound To Cdofn3
pdb|3N1F|B Chain B, Crystal Structure Of Ihhn Bound To Cdofn3
pdb|3N1M|B Chain B, Crystal Structure Of Ihhn Bound To Bocfn3
pdb|3N1O|A Chain A, Crystal Structure Of Ihhn
pdb|3N1O|B Chain B, Crystal Structure Of Ihhn
pdb|3N1O|C Chain C, Crystal Structure Of Ihhn
pdb|3N1P|B Chain B, Crystal Structure Of Ihhn Bound To Bocfn3
Length = 169
Score = 29.3 bits (64), Expect = 3.1, Method: Compositional matrix adjust.
Identities = 33/128 (25%), Positives = 56/128 (43%), Gaps = 21/128 (16%)
Query: 84 QVVGPQRLPPTPARRALFIVYQTAVPYIAERI-----RYN---AAGSSRDQSLETIESP- 134
+VVG +R PP R+ + + Y+ P + E+ RY A S R + L +P
Sbjct: 8 RVVGSRRRPP---RKLVPLAYKQFSPNVPEKTLGASGRYEGKIARSSERFKELTPNYNPD 64
Query: 135 -------SSSAPRVYSAVSRLKEKLNGLRLYVIRRWPMVLPIVREFLQLVLRANLMFFYF 187
++ A R+ + R K++LN L + V+ +WP V V E + ++
Sbjct: 65 IIFKDEENTGADRLMT--QRCKDRLNSLAISVMNQWPGVKLRVTEGWDEDGHHSEESLHY 122
Query: 188 EGLYYHIS 195
EG I+
Sbjct: 123 EGRAVDIT 130
>pdb|1F12|A Chain A, L-3-Hydroxyacyl-Coa Dehydrogenase Complexed With 3-
Hydroxybutyryl-Coa
pdb|1F12|B Chain B, L-3-Hydroxyacyl-Coa Dehydrogenase Complexed With 3-
Hydroxybutyryl-Coa
pdb|1F14|A Chain A, L-3-Hydroxyacyl-Coa Dehydrogenase (Apo)
pdb|1F14|B Chain B, L-3-Hydroxyacyl-Coa Dehydrogenase (Apo)
pdb|1F17|A Chain A, L-3-Hydroxyacyl-Coa Dehydrogenase Complexed With Nadh
pdb|1F17|B Chain B, L-3-Hydroxyacyl-Coa Dehydrogenase Complexed With Nadh
Length = 310
Score = 29.3 bits (64), Expect = 3.7, Method: Compositional matrix adjust.
Identities = 21/75 (28%), Positives = 36/75 (48%), Gaps = 7/75 (9%)
Query: 58 VGQMLYYVLTTGSGQQTLGEEYCDITQVVG--PQRLPPTPARRALFIVYQTAVPYIAERI 115
V +++ + T + Q+T E D ++ +G P TP FIV + VPY+ E I
Sbjct: 165 VMKLVEVIKTPMTSQKTF-ESLVDFSKALGKHPVSCKDTPG----FIVNRLLVPYLMEAI 219
Query: 116 RYNAAGSSRDQSLET 130
R G + + ++T
Sbjct: 220 RLYERGDASKEDIDT 234
>pdb|1M76|A Chain A, Crystal Structure Of The S137c Mutant Of L-3-Hydroxyacyl-
Coa Dehydrogenase In Complex With Nad And
Acetoacetyl-Coa
pdb|1M76|B Chain B, Crystal Structure Of The S137c Mutant Of L-3-Hydroxyacyl-
Coa Dehydrogenase In Complex With Nad And
Acetoacetyl-Coa
Length = 302
Score = 29.3 bits (64), Expect = 3.8, Method: Compositional matrix adjust.
Identities = 21/75 (28%), Positives = 36/75 (48%), Gaps = 7/75 (9%)
Query: 58 VGQMLYYVLTTGSGQQTLGEEYCDITQVVG--PQRLPPTPARRALFIVYQTAVPYIAERI 115
V +++ + T + Q+T E D ++ +G P TP FIV + VPY+ E I
Sbjct: 165 VMKLVEVIKTPMTSQKTF-ESLVDFSKALGKHPVSCKDTPG----FIVNRLLVPYLMEAI 219
Query: 116 RYNAAGSSRDQSLET 130
R G + + ++T
Sbjct: 220 RLYERGDASKEDIDT 234
>pdb|2YHN|A Chain A, The Idol-Ube2d Complex Mediates Sterol-Dependent
Degradation Of The Ldl Receptor
pdb|2YHN|B Chain B, The Idol-Ube2d Complex Mediates Sterol-Dependent
Degradation Of The Ldl Receptor
pdb|2YHO|A Chain A, The Idol-Ube2d Complex Mediates Sterol-Dependent
Degradation Of The Ldl Receptor
pdb|2YHO|C Chain C, The Idol-Ube2d Complex Mediates Sterol-Dependent
Degradation Of The Ldl Receptor
pdb|2YHO|E Chain E, The Idol-Ube2d Complex Mediates Sterol-Dependent
Degradation Of The Ldl Receptor
pdb|2YHO|G Chain G, The Idol-Ube2d Complex Mediates Sterol-Dependent
Degradation Of The Ldl Receptor
Length = 79
Score = 29.3 bits (64), Expect = 3.8, Method: Compositional matrix adjust.
Identities = 15/45 (33%), Positives = 22/45 (48%), Gaps = 5/45 (11%)
Query: 301 CTLCLSNRQDPTATPCGHVFCWNCIMEWCNEKPE-CPLCRAPITH 344
C +C + T PCGH C E C + + CP+CR+ + H
Sbjct: 21 CMVCCEEEINSTFCPCGHTVCC----ESCAAQLQSCPVCRSRVEH 61
>pdb|1IL0|A Chain A, X-Ray Crystal Structure Of The E170q Mutant Of Human L-3-
Hydroxyacyl-Coa Dehydrogenase
pdb|1IL0|B Chain B, X-Ray Crystal Structure Of The E170q Mutant Of Human L-3-
Hydroxyacyl-Coa Dehydrogenase
Length = 302
Score = 29.3 bits (64), Expect = 3.9, Method: Compositional matrix adjust.
Identities = 21/75 (28%), Positives = 36/75 (48%), Gaps = 7/75 (9%)
Query: 58 VGQMLYYVLTTGSGQQTLGEEYCDITQVVG--PQRLPPTPARRALFIVYQTAVPYIAERI 115
V +++ + T + Q+T E D ++ +G P TP FIV + VPY+ E I
Sbjct: 165 VMKLVQVIKTPMTSQKTF-ESLVDFSKALGKHPVSCKDTPG----FIVNRLLVPYLMEAI 219
Query: 116 RYNAAGSSRDQSLET 130
R G + + ++T
Sbjct: 220 RLYERGDASKEDIDT 234
>pdb|1F0Y|A Chain A, L-3-Hydroxyacyl-Coa Dehydrogenase Complexed With
Acetoacetyl-Coa And Nad+
pdb|1F0Y|B Chain B, L-3-Hydroxyacyl-Coa Dehydrogenase Complexed With
Acetoacetyl-Coa And Nad+
Length = 302
Score = 28.9 bits (63), Expect = 4.1, Method: Compositional matrix adjust.
Identities = 21/75 (28%), Positives = 36/75 (48%), Gaps = 7/75 (9%)
Query: 58 VGQMLYYVLTTGSGQQTLGEEYCDITQVVG--PQRLPPTPARRALFIVYQTAVPYIAERI 115
V +++ + T + Q+T E D ++ +G P TP FIV + VPY+ E I
Sbjct: 165 VMKLVEVIKTPMTSQKTF-ESLVDFSKALGKHPVSCKDTPG----FIVNRLLVPYLMEAI 219
Query: 116 RYNAAGSSRDQSLET 130
R G + + ++T
Sbjct: 220 RLYERGDASKEDIDT 234
>pdb|1M75|A Chain A, Crystal Structure Of The N208s Mutant Of L-3-Hydroxyacyl-
Coa Dehydrogenase In Complex With Nad And
Acetoacetyl-Coa
pdb|1M75|B Chain B, Crystal Structure Of The N208s Mutant Of L-3-Hydroxyacyl-
Coa Dehydrogenase In Complex With Nad And
Acetoacetyl-Coa
Length = 302
Score = 28.9 bits (63), Expect = 4.2, Method: Compositional matrix adjust.
Identities = 21/75 (28%), Positives = 36/75 (48%), Gaps = 7/75 (9%)
Query: 58 VGQMLYYVLTTGSGQQTLGEEYCDITQVVG--PQRLPPTPARRALFIVYQTAVPYIAERI 115
V +++ + T + Q+T E D ++ +G P TP FIV + VPY+ E I
Sbjct: 165 VMKLVEVIKTPMTSQKTF-ESLVDFSKALGKHPVSCKDTPG----FIVSRLLVPYLMEAI 219
Query: 116 RYNAAGSSRDQSLET 130
R G + + ++T
Sbjct: 220 RLYERGDASKEDIDT 234
>pdb|3HAD|A Chain A, Biochemical Characterization And Structure Determination
Of Human Heart Short Chain L-3-Hydroxyacyl Coa
Dehydrogenase Provide Insight Into Catalytic Mechanism
pdb|3HAD|B Chain B, Biochemical Characterization And Structure Determination
Of Human Heart Short Chain L-3-Hydroxyacyl Coa
Dehydrogenase Provide Insight Into Catalytic Mechanism
Length = 308
Score = 28.9 bits (63), Expect = 4.2, Method: Compositional matrix adjust.
Identities = 21/75 (28%), Positives = 36/75 (48%), Gaps = 7/75 (9%)
Query: 58 VGQMLYYVLTTGSGQQTLGEEYCDITQVVG--PQRLPPTPARRALFIVYQTAVPYIAERI 115
V +++ + T + Q+T E D ++ +G P TP FIV + VPY+ E I
Sbjct: 165 VMKLVEVIKTPMTSQKTF-ESLVDFSKALGKHPVSCKDTPG----FIVNRLLVPYLMEAI 219
Query: 116 RYNAAGSSRDQSLET 130
R G + + ++T
Sbjct: 220 RLYERGDASKEDIDT 234
>pdb|1LSO|A Chain A, Crystal Structure Of The S137a Mutant Of L-3-Hydroxyacyl-
Coa Dehydrogenase In Complex With Nad
pdb|1LSO|B Chain B, Crystal Structure Of The S137a Mutant Of L-3-Hydroxyacyl-
Coa Dehydrogenase In Complex With Nad
Length = 302
Score = 28.9 bits (63), Expect = 4.3, Method: Compositional matrix adjust.
Identities = 21/75 (28%), Positives = 36/75 (48%), Gaps = 7/75 (9%)
Query: 58 VGQMLYYVLTTGSGQQTLGEEYCDITQVVG--PQRLPPTPARRALFIVYQTAVPYIAERI 115
V +++ + T + Q+T E D ++ +G P TP FIV + VPY+ E I
Sbjct: 165 VMKLVEVIKTPMTSQKTF-ESLVDFSKALGKHPVSCKDTPG----FIVNRLLVPYLMEAI 219
Query: 116 RYNAAGSSRDQSLET 130
R G + + ++T
Sbjct: 220 RLYERGDASKEDIDT 234
>pdb|1LSJ|A Chain A, Crystal Structure Of The E110q Mutant Of L-3-hydroxyacyl-
Coa Dehydrogenase In Complex With Nad
pdb|1LSJ|B Chain B, Crystal Structure Of The E110q Mutant Of L-3-hydroxyacyl-
Coa Dehydrogenase In Complex With Nad
Length = 302
Score = 28.9 bits (63), Expect = 4.3, Method: Compositional matrix adjust.
Identities = 21/75 (28%), Positives = 36/75 (48%), Gaps = 7/75 (9%)
Query: 58 VGQMLYYVLTTGSGQQTLGEEYCDITQVVG--PQRLPPTPARRALFIVYQTAVPYIAERI 115
V +++ + T + Q+T E D ++ +G P TP FIV + VPY+ E I
Sbjct: 165 VMKLVEVIKTPMTSQKTF-ESLVDFSKALGKHPVSCKDTPG----FIVNRLLVPYLMEAI 219
Query: 116 RYNAAGSSRDQSLET 130
R G + + ++T
Sbjct: 220 RLYERGDASKEDIDT 234
>pdb|3EB5|A Chain A, Structure Of The Ciap2 Ring Domain
pdb|3EB6|A Chain A, Structure Of The Ciap2 Ring Domain Bound To Ubch5b
Length = 74
Score = 28.9 bits (63), Expect = 4.4, Method: Composition-based stats.
Identities = 14/43 (32%), Positives = 20/43 (46%), Gaps = 5/43 (11%)
Query: 301 CTLCLSNRQDPTATPCGH-VFCWNCIMEWCNEKPECPLCRAPI 342
C +C+ PCGH V C +C +CP+CR+ I
Sbjct: 27 CKVCMDKEVSIVFIPCGHLVVCKDC----APSLRKCPICRSTI 65
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.322 0.135 0.415
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 10,063,525
Number of Sequences: 62578
Number of extensions: 387111
Number of successful extensions: 887
Number of sequences better than 100.0: 80
Number of HSP's better than 100.0 without gapping: 53
Number of HSP's successfully gapped in prelim test: 27
Number of HSP's that attempted gapping in prelim test: 827
Number of HSP's gapped (non-prelim): 81
length of query: 355
length of database: 14,973,337
effective HSP length: 100
effective length of query: 255
effective length of database: 8,715,537
effective search space: 2222461935
effective search space used: 2222461935
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 52 (24.6 bits)