BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 018471
(355 letters)
Database: swissprot
539,616 sequences; 191,569,459 total letters
Searching..................................................done
>sp|Q9SYU4|PEX10_ARATH Peroxisome biogenesis factor 10 OS=Arabidopsis thaliana GN=PEX10
PE=1 SV=1
Length = 381
Score = 519 bits (1336), Expect = e-146, Method: Compositional matrix adjust.
Identities = 260/366 (71%), Positives = 284/366 (77%), Gaps = 19/366 (5%)
Query: 4 GETRRFPPAAQPEIMRAAEKDEQYASFIYDACRDAFRQLFGTRVAVAYQSETKLVGQMLY 63
G RRFP AAQPEIMRAAEKD+QYASFI++ACRDAFR LFGTR+A+AYQ E KL+GQMLY
Sbjct: 21 GGIRRFPLAAQPEIMRAAEKDDQYASFIHEACRDAFRHLFGTRIALAYQKEMKLLGQMLY 80
Query: 64 YVLTTGSGQQTLGEEYCDITQVVGPQRLPPTPARRALFIVYQTAVPYIAERIRYNAA--- 120
YVLTTGSGQQTLGEEYCDI QV GP L PTPARRALFI+YQTAVPYIAERI AA
Sbjct: 81 YVLTTGSGQQTLGEEYCDIIQVAGPYGLSPTPARRALFILYQTAVPYIAERISTRAATQA 140
Query: 121 ----------GSSRDQSLETIESPSSSAPRV-YSAVSRLKEKLNGLRLYVIRRWPMVLPI 169
G S S I+ PSSS S VSRL ++L I+RWP+VLP+
Sbjct: 141 VTFDESDEFFGDSHIHSPRMIDLPSSSQVETSTSVVSRLNDRLMRSWHRAIQRWPVVLPV 200
Query: 170 VREFLQLVLRANLMFFYFEGLYYHISKRTAGIRYVFIGKPTNQRPRYQILGVFLLIQLCI 229
RE LQLVLRANLM FYFEG YYHISKR +G+RYVFIGK NQRPRYQILGVFLLIQLCI
Sbjct: 201 AREVLQLVLRANLMLFYFEGFYYHISKRASGVRYVFIGKQLNQRPRYQILGVFLLIQLCI 260
Query: 230 IAAEGLRRSNLSSIASSVHHTSLGFQQASTGRGLPVLNEEGSLIPSESDKGGWVLDSTST 289
+AAEGLRRSNLSSI SS+ S+G Q S GRGLPVLNEEG+LI SE++KG W ST
Sbjct: 261 LAAEGLRRSNLSSITSSIQQASIGSYQTSGGRGLPVLNEEGNLITSEAEKGNW-----ST 315
Query: 290 SESQAAPGVSKCTLCLSNRQDPTATPCGHVFCWNCIMEWCNEKPECPLCRAPITHSSLVC 349
S+S + V KCTLCLS RQ PTATPCGHVFCW+CIMEWCNEK ECPLCR P THSSLVC
Sbjct: 316 SDSTSTEAVGKCTLCLSTRQHPTATPCGHVFCWSCIMEWCNEKQECPLCRTPNTHSSLVC 375
Query: 350 LYHSDF 355
LYHSDF
Sbjct: 376 LYHSDF 381
>sp|Q8HXW8|PEX10_MACFA Peroxisome biogenesis factor 10 OS=Macaca fascicularis GN=PEX10
PE=2 SV=1
Length = 326
Score = 161 bits (407), Expect = 9e-39, Method: Compositional matrix adjust.
Identities = 112/356 (31%), Positives = 169/356 (47%), Gaps = 52/356 (14%)
Query: 12 AAQPEIMRAAEKDEQYASFIYDACRDAFRQLFGTRVAVAYQSETKLVGQMLYYVLTTGSG 71
A+ PE++RAA+KDE Y + A A L G R + ++ E +L+ + Y+ LTT +G
Sbjct: 6 ASPPEVIRAAQKDEYYRGGLRSAAGGALHSLAGARKWLEWRKEVELLSDVAYFGLTTLAG 65
Query: 72 QQTLGEEYCDITQVVGPQRLPPTPARRALFIVYQTAVPYIAERIRYNAAGSSRDQSLETI 131
QTLGEEY I +V Q P+ RR + + +PY+ +++ +Q L+
Sbjct: 66 YQTLGEEYVSIVRVDPSQTRVPSWLRRGVLVTLHAVLPYLLDKVLLPL-----EQELQA- 119
Query: 132 ESPSSSAPRVYSAVSRLKEKLNGLRLYVIRRWPMVLP-----------IVREFLQLVLRA 180
P S P S V +G+R +V R + ++R+ L + +
Sbjct: 120 -DPDSGRPSQGSLVPG-GRGCSGVRRWVRRHTATLTEQQRRALLRAAFVLRQGLACLQQL 177
Query: 181 NLMFFYFEGLYYHISKRTAGIRYVFI----GKPTNQRPRYQILGVFLLIQLCIIAAEGLR 236
++ +FY G++YH++KR GI Y+ + G+ R Y++LGV L+ L + + GLR
Sbjct: 178 HVAWFYIHGVFYHLAKRLTGITYLRVRSLPGEDLRARVSYRLLGVVSLLHL--VLSVGLR 235
Query: 237 RSNLSSIASSVHHTSLGFQQASTGRGLPVLNEEGSLIPSESDKGGWVLDSTSTSESQAAP 296
GF+Q R +E L S + G + E +A
Sbjct: 236 --------------LYGFRQRQRAR------KEWRLHRGLSHRRG-------SLEERAVS 268
Query: 297 GVSKCTLCLSNRQDPTATPCGHVFCWNCIMEWCNEKPECPLCRAPITHSSLVCLYH 352
CTLCL R+ PTATPCGH+FCW CI WC+ K ECPLCR L+ L H
Sbjct: 269 RNPLCTLCLEERRHPTATPCGHLFCWECITAWCSSKAECPLCREKFPPQKLIYLRH 324
>sp|O60683|PEX10_HUMAN Peroxisome biogenesis factor 10 OS=Homo sapiens GN=PEX10 PE=1 SV=1
Length = 326
Score = 156 bits (395), Expect = 2e-37, Method: Compositional matrix adjust.
Identities = 112/356 (31%), Positives = 169/356 (47%), Gaps = 52/356 (14%)
Query: 12 AAQPEIMRAAEKDEQYASFIYDACRDAFRQLFGTRVAVAYQSETKLVGQMLYYVLTTGSG 71
A+ PE++RAA+KDE Y + A A L G R + ++ E +L+ + Y+ LTT +G
Sbjct: 6 ASPPEVIRAAQKDEYYRGGLRSAAGGALHSLAGARKWLEWRKEVELLSDVAYFGLTTLAG 65
Query: 72 QQTLGEEYCDITQVVGPQRLP-PTPARRALFIVYQTAVPYIAERIRYNAAGSSRDQSLET 130
QTLGEEY I QV P R+ P+ RR + + +PY+ ++ A +Q L+
Sbjct: 66 YQTLGEEYVSIIQV-DPSRIHVPSSLRRGVLVTLHAVLPYLLDK-----ALLPLEQELQA 119
Query: 131 IESPSSSAP---------RVYSAVSR-LKEKLNGLRLYVIRRWPMVLPIVREFLQLVLRA 180
P S P R S R ++ L R + ++R+ L + R
Sbjct: 120 --DPDSGRPLQGSLGPGGRGCSGARRWMRHHTATLTEQQRRALLRAVFVLRQGLACLQRL 177
Query: 181 NLMFFYFEGLYYHISKRTAGIRYVFI----GKPTNQRPRYQILGVFLLIQLCIIAAEGLR 236
++ +FY G++YH++KR GI Y+ + G+ R Y++LGV L+ L +
Sbjct: 178 HVAWFYIHGVFYHLAKRLTGITYLRVRSLPGEDLRARVSYRLLGVISLLHLVL------- 230
Query: 237 RSNLSSIASSVHHTSLGFQQASTGRGLPVLNEEGSLIPSESDKGGWVLDSTSTSESQAAP 296
S+ ++ GF+Q R +E L S + ++ E +A
Sbjct: 231 -----SMGLQLY----GFRQRQRAR------KEWRLHRGLSHR-------RASLEERAVS 268
Query: 297 GVSKCTLCLSNRQDPTATPCGHVFCWNCIMEWCNEKPECPLCRAPITHSSLVCLYH 352
CTLCL R+ PTATPCGH+FCW CI WC+ K ECPLCR L+ L H
Sbjct: 269 RNPLCTLCLEERRHPTATPCGHLFCWECITAWCSSKAECPLCREKFPPQKLIYLRH 324
>sp|Q54S31|PEX10_DICDI Peroxisome biogenesis factor 10 OS=Dictyostelium discoideum
GN=pex10 PE=3 SV=2
Length = 374
Score = 156 bits (394), Expect = 3e-37, Method: Compositional matrix adjust.
Identities = 109/348 (31%), Positives = 159/348 (45%), Gaps = 62/348 (17%)
Query: 12 AAQPEIMRAAEKDEQYASFIYDACRDAFRQLFGTRVAVAYQSETKLVGQMLYYVLTTGSG 71
A QP+I+R+++KDE Y D C + ++ G R + QSE+KL+ +YY+LTT G
Sbjct: 81 ADQPDILRSSQKDEYYKKLFEDQCFEMLTRITGPRFIMNRQSESKLLANTIYYLLTTMIG 140
Query: 72 QQTLGEEYCDITQVVGPQ-RLPPTPARRALFIVYQTAVPYIAERIRYNAAGSSRDQSLET 130
QTLGEEYC++ ++ +P P R L+ + A PY+ ++
Sbjct: 141 SQTLGEEYCNLRKIKDKTFSIPSIPDRIKLYFFHLLA-PYLIKK---------------- 183
Query: 131 IESPSSSAPRVYSAVSRLKEKLNGLRLYVIRRWPMVLPIVREFLQLVLRANLMFFYFEGL 190
S P+++ +R P L I++E R +L FYF G
Sbjct: 184 ------SLPKLF------------------QRHPK-LYILKEIFPKFERLHLALFYFNGS 218
Query: 191 YYHISKRTAGIRYVFIGKPTNQRPRYQILGVFLLIQLCIIAAEGLRRSNLSSIASSVHHT 250
Y+ SKR + IRY+F K +RP+Y I + L S +
Sbjct: 219 YFEFSKRLSDIRYIFNRKIDQKRPKYDI------------LGLLIIIQILLSTFMYLKEN 266
Query: 251 SLGFQQASTGRGLPVLNEEGSLIPSESDKGGWVLDST------STSESQAAPGVSKCTLC 304
S +Q G EE + ++ K V DS + +Q KCTLC
Sbjct: 267 SFFLKQQQKDGGCNGDGEEDNQDLNKDIKIEQV-DSVINNNNQDQNNNQEEEEEQKCTLC 325
Query: 305 LSNRQDPTATPCGHVFCWNCIMEWCNEKPECPLCRAPITHSSLVCLYH 352
L R TAT CGH+FCW+CI EWCN K +CP+CR PI+ + V LY+
Sbjct: 326 LEVRTHTTATICGHLFCWHCITEWCNNKEQCPVCRCPISIRTCVPLYN 373
>sp|B1AUE5|PEX10_MOUSE Peroxisome biogenesis factor 10 OS=Mus musculus GN=Pex10 PE=2 SV=1
Length = 324
Score = 149 bits (377), Expect = 3e-35, Method: Compositional matrix adjust.
Identities = 110/354 (31%), Positives = 168/354 (47%), Gaps = 48/354 (13%)
Query: 12 AAQPEIMRAAEKDEQYASFIYDACRDAFRQLFGTRVAVAYQSETKLVGQMLYYVLTTGSG 71
A PE++RAA+KDE Y + A +A L G + + ++ E +L+ + Y+ LTT +G
Sbjct: 4 AGAPEVIRAAQKDEYYLGGLRSAAGEALHSLAGAKKWLEWRKEIELLSDIAYFGLTTIAG 63
Query: 72 QQTLGEEYCDITQVVGPQRLPPTPARRALFIVYQTAVPYIAERIRY----------NAAG 121
QTLGEEY I QV Q+ P+ RRA + +PY+ ++ +A
Sbjct: 64 YQTLGEEYVGIIQVDPSQQRVPSRLRRAALVALHAVLPYLLDKALLPLEQELQADGDAPR 123
Query: 122 SSRDQSLETIESPSSSAPRV-YSAVSRLKEKLNGLRLYVIRRWPMVLPIVREFLQLVLRA 180
+S+ L S S + V + A + +++ L+ V I+R+ + R
Sbjct: 124 ASQGSLLPGGRSRSGARRWVRHHAATLTEQQRKALQRAVF--------ILRQGFACLHRL 175
Query: 181 NLMFFYFEGLYYHISKRTAGIRYVFIGK--PTNQRPRYQILGVFLLIQLCIIAAEGLRRS 238
++ +FY G +YH++KR AGI Y+ + +Q+ R + L+ L ++ + GLR
Sbjct: 176 HVAWFYIHGTFYHLAKRLAGITYLRTRRLPGEDQKARTSYGLLGLISLLHLVLSMGLRLY 235
Query: 239 NLSSIASSVHHTSLGFQQASTGRGLPVLNEEGSLIPSESDKGGWVLDSTSTSESQAAPGV 298
+ F+Q R +E L + S + S+ E +A
Sbjct: 236 S--------------FRQKQRAR------KEWRLHRNLSHR-------RSSLEDRAVCRT 268
Query: 299 SKCTLCLSNRQDPTATPCGHVFCWNCIMEWCNEKPECPLCRAPITHSSLVCLYH 352
CTLCL R+ TATPCGH+FCW CI EWCN K ECPLCR LV L H
Sbjct: 269 PLCTLCLEERRHSTATPCGHLFCWECITEWCNTKTECPLCREKFPPQKLVYLRH 322
>sp|Q05568|PEX10_YEAST Peroxisome biogenesis factor 10 OS=Saccharomyces cerevisiae (strain
ATCC 204508 / S288c) GN=PEX10 PE=1 SV=1
Length = 337
Score = 147 bits (371), Expect = 1e-34, Method: Compositional matrix adjust.
Identities = 110/358 (30%), Positives = 157/358 (43%), Gaps = 78/358 (21%)
Query: 8 RFPPAAQPEIMRAAEKDEQYASF----IYDACRDAFRQLFGTRVAVAYQSETKLVGQMLY 63
RFP A P I++A +KDEQ + + C+ QLF +Y E + ++LY
Sbjct: 19 RFPFADAPSIVQAHQKDEQIQGLLIMKVTELCKLIKSQLFVN----SYPKELSIFAKLLY 74
Query: 64 YVLTTGSGQQTLGEEYCDITQVVGPQRLPPTPARRALFIVYQTA---VPYIAERIRYNAA 120
+ TTG +TLGEEY D+T R A R IV+ A PY ++
Sbjct: 75 LLFTTGRRGRTLGEEYVDLTYT---NRKGTRLAGRLKMIVFAFAYPLCPYFITKLYKKIM 131
Query: 121 GSSRDQSLETIESPSSSAPRVYSAVSRLKEKLNGLRLYVIRRWPMVLPIVREFLQLVLRA 180
++++ +E ES V + L +L
Sbjct: 132 KNNKESKIEDTES--------------------------------VAAFCKGLLDFILDV 159
Query: 181 NLMFFYFEGLYYHISKRTAGIRYVFI----GKPTNQRP----RYQILGVFLLIQLCIIAA 232
++ FYF+G +Y ISKR G+RYVF N R +Y++LG LL Q ++
Sbjct: 160 HMTLFYFKGAFYSISKRIFGMRYVFKHILSKNEANFREEGSQKYKVLGYILLAQ-NVMKW 218
Query: 233 EGLRRSNLSS-------IASSVHHTSLGFQQASTGRGLPVLNEEGSLIPSESDKGGWVLD 285
+ S L S S+ +S+G Q+ S + EG IP ES L
Sbjct: 219 YPVLTSTLGSWIYGRKRTNDSITRSSVGLQERSEHESI-----EG--IPKESQ-----LT 266
Query: 286 STSTSESQAAPGV----SKCTLCLSNRQDPTATPCGHVFCWNCIMEWCNEKPECPLCR 339
+ S+ P + KC LCL N DP+ PCGH+FCW+C+M WC E+PECPLCR
Sbjct: 267 HINLSDKNQLPFIPEASRKCILCLMNMSDPSCAPCGHLFCWSCLMSWCKERPECPLCR 324
>sp|Q00940|PEX10_PICAN Peroxisome biogenesis factor 10 OS=Pichia angusta GN=PEX10 PE=3
SV=1
Length = 295
Score = 141 bits (356), Expect = 6e-33, Method: Compositional matrix adjust.
Identities = 101/342 (29%), Positives = 146/342 (42%), Gaps = 62/342 (18%)
Query: 12 AAQPEIMRAAEKDEQYASFIYDACRDAFRQLFGTRVAVAYQSETKLVGQMLYYVLTTGSG 71
A P I+RA +KD + S +++ D + + G+ Y E + + LY LTT G
Sbjct: 8 ANAPAIVRANQKDSYFESRLHNQLLDVVKAIKGSHFVHKYPEELRTLATALYLCLTTLVG 67
Query: 72 QQTLGEEYCDITQVVGPQRLPPTPARRALFIVYQTAVPYIAERIRYNAAGSSRDQSLETI 131
+TLGEEY D+ V R P A R F+V PY Q L+ +
Sbjct: 68 SKTLGEEYVDLVYVSRDGRKIPKFASRFGFVVAYVLFPYAVR------------QLLQKL 115
Query: 132 ESPSSSAPRVYSAVSRLKEKLNGLRLYVIRRWPMVLPIVREFLQLVLRANLMFFYFEGLY 191
++ S ++ S VS + V + L L +L FYF G Y
Sbjct: 116 KAQQSRLAQLVSGVSYMN--------------------VMDLLNL----HLALFYFTGKY 151
Query: 192 YHISKRTAGIRYVFIGK--PTNQRPR--YQILGVFLLIQLCIIAAEGLRRSNLSSIASSV 247
Y +KR G+RY F + QR R Y++LG+ ++ Q LR+ L +V
Sbjct: 152 YQFAKRLFGLRYAFGYRVDKNQQRARGNYELLGLLIIFQTVFKNVANLRK--LWGATKTV 209
Query: 248 HHTSLGFQQASTGRGLPVLNEEGSLIPSESDKGGWVLDSTSTSESQAAPGVSK-CTLCLS 306
+ G LI D+ V+D P S+ C LCLS
Sbjct: 210 Q-------------------DSGDLIYRFRDQTSDVIDLADPKVLPYLPEASRTCMLCLS 250
Query: 307 NRQDPTATPCGHVFCWNCIMEWCNEKPECPLCRAPITHSSLV 348
+DP+ CGHVFCW C+++W E+ ECPLCRA + S L+
Sbjct: 251 PMKDPSCGECGHVFCWKCVLDWVKERQECPLCRAKMRESQLL 292
>sp|Q92265|PEX10_PICPA Peroxisome biogenesis factor 10 OS=Komagataella pastoris GN=PEX10
PE=1 SV=1
Length = 419
Score = 105 bits (261), Expect = 7e-22, Method: Compositional matrix adjust.
Identities = 92/336 (27%), Positives = 147/336 (43%), Gaps = 47/336 (13%)
Query: 12 AAQPEIMRAAEKDEQYASFIYDACRDAFRQLFGTRVAVAYQSETKLVGQMLYYVLTTGSG 71
A P I+RA +KD + + + D ++ + G R + E + + LY LTT G
Sbjct: 26 ANAPAIVRANQKDSYFETVLRDKLQNVIQIFKGQRFTHTHPEEIGVAAKALYLSLTTLLG 85
Query: 72 QQTLGEEYCDITQVVGPQRLPPTPARRALFIVYQTAVPYIAERI--RYNAAGSSRDQSLE 129
+TLGEEY D+ V + P RA FI +PY R+ R ++ + +D+ E
Sbjct: 86 TKTLGEEYVDLIYVSRDGKRIPRYLARAGFIFAYAILPYFLTRLFRRLKSSSTPKDEVTE 145
Query: 130 TIESPSSSAPRVYSAVSRLKEKLNGLRLYVIRRWPMVLPIVR--------EFLQLVLRAN 181
EK+N + P+ L I + + L ++ +
Sbjct: 146 --------------------EKIN-------KELPISLRIEKYLSNMSYSKVLDTIMNLH 178
Query: 182 LMFFYFEGLYYHISKRTAGIRYVFIGKPTNQRP---RYQILGVFLLIQLCIIAAEGLRRS 238
+ FYF G +Y+ISKR +RY F K +R Y++LG +++QL + + G +
Sbjct: 179 IAVFYFSGQFYNISKRFFSMRYAFGHKINKERTPNGNYELLGGLIVLQLVMKSLGGFKGL 238
Query: 239 NLSSIASSVHHTS-LGFQQASTGRGLPVLNEEGSLIPSESDKGGWVLDSTSTSESQAAPG 297
S + H S L G+P E+ ++D + + P
Sbjct: 239 IGSFTGNDEHDESNLRANNKDIMYGIPSEEEQEEAKQQLG-----IIDLSDPGQLPYIPE 293
Query: 298 VSK-CTLCLSNRQDPTATPCGHVFCWNCIMEWCNEK 332
S+ C LCLS +PTA CGH FCW+CI++WC E+
Sbjct: 294 SSRQCMLCLSYMTNPTAANCGHCFCWSCIIDWCKER 329
>sp|Q9UUF0|PEX10_SCHPO Peroxisome biogenesis factor 10 OS=Schizosaccharomyces pombe
(strain 972 / ATCC 24843) GN=pas4 PE=3 SV=1
Length = 306
Score = 65.5 bits (158), Expect = 6e-10, Method: Compositional matrix adjust.
Identities = 27/54 (50%), Positives = 36/54 (66%)
Query: 297 GVSKCTLCLSNRQDPTATPCGHVFCWNCIMEWCNEKPECPLCRAPITHSSLVCL 350
G KC+LC+ P AT CGH+FCW+CI W ++K ECPLCRA + S ++ L
Sbjct: 252 GNRKCSLCMEFIHCPAATECGHIFCWSCINGWTSKKSECPLCRAFSSPSKIILL 305
>sp|Q91YT2|RN185_MOUSE E3 ubiquitin-protein ligase RNF185 OS=Mus musculus GN=Rnf185 PE=2
SV=1
Length = 192
Score = 62.0 bits (149), Expect = 7e-09, Method: Compositional matrix adjust.
Identities = 27/79 (34%), Positives = 41/79 (51%), Gaps = 3/79 (3%)
Query: 276 ESDKGGWVLDSTSTSESQAAPGVSKCTLCLSNRQDPTATPCGHVFCWNCIMEWCNEKPE- 334
S+ GG S T ES +C +CL +D + CGH+FCW C+ +W +P
Sbjct: 14 NSNAGGPSGSSNGTGESGGQDSTFECNICLDTAKDAVISLCGHLFCWPCLHQWLETRPNR 73
Query: 335 --CPLCRAPITHSSLVCLY 351
CP+C+A I+ ++ LY
Sbjct: 74 QVCPVCKAGISRDKVIPLY 92
>sp|O64425|RMA1_ARATH E3 ubiquitin-protein ligase RMA1 OS=Arabidopsis thaliana GN=RMA1
PE=1 SV=1
Length = 249
Score = 59.7 bits (143), Expect = 3e-08, Method: Compositional matrix adjust.
Identities = 24/63 (38%), Positives = 38/63 (60%), Gaps = 11/63 (17%)
Query: 300 KCTLCLSNRQDPTATPCGHVFCWNCIMEWCNEKP-----------ECPLCRAPITHSSLV 348
C +CL + Q+P T CGH+FCW CI +W + + +CP+C++ ++HS+LV
Sbjct: 47 DCNICLDSVQEPVVTLCGHLFCWPCIHKWLDVQSFSTSDEYQRHRQCPVCKSKVSHSTLV 106
Query: 349 CLY 351
LY
Sbjct: 107 PLY 109
>sp|Q8GUK7|RMA3_ARATH E3 ubiquitin-protein ligase RMA3 OS=Arabidopsis thaliana GN=RMA3
PE=1 SV=1
Length = 243
Score = 59.3 bits (142), Expect = 4e-08, Method: Compositional matrix adjust.
Identities = 26/65 (40%), Positives = 35/65 (53%), Gaps = 10/65 (15%)
Query: 297 GVSKCTLCLSNRQDPTATPCGHVFCWNCIMEWCN----------EKPECPLCRAPITHSS 346
G C +CL DP T CGH+FCW CI +W + + CP+C++ IT +S
Sbjct: 40 GCFDCNICLDTAHDPVVTLCGHLFCWPCIYKWLHVQLSSVSVDQHQNNCPVCKSNITITS 99
Query: 347 LVCLY 351
LV LY
Sbjct: 100 LVPLY 104
>sp|P93030|RMA2_ARATH E3 ubiquitin-protein ligase RMA2 OS=Arabidopsis thaliana GN=RMA2
PE=1 SV=1
Length = 193
Score = 57.0 bits (136), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 27/83 (32%), Positives = 42/83 (50%), Gaps = 19/83 (22%)
Query: 285 DSTSTSESQAAPGVSKCTLCLSNRQDPTATPCGHVFCWNCIMEWC--------------- 329
D T+ +S G C +CL +DP T CGH+FCW CI +W
Sbjct: 8 DDTTLVDSG---GDFDCNICLDQVRDPVVTLCGHLFCWPCIHKWTYASNNSRQRVDQYDH 64
Query: 330 -NEKPECPLCRAPITHSSLVCLY 351
E P+CP+C++ ++ ++LV +Y
Sbjct: 65 KREPPKCPVCKSDVSEATLVPIY 87
>sp|Q568Y3|RN185_RAT E3 ubiquitin-protein ligase RNF185 OS=Rattus norvegicus GN=Rnf185
PE=2 SV=1
Length = 192
Score = 55.5 bits (132), Expect = 7e-07, Method: Compositional matrix adjust.
Identities = 22/64 (34%), Positives = 35/64 (54%), Gaps = 3/64 (4%)
Query: 291 ESQAAPGVSKCTLCLSNRQDPTATPCGHVFCWNCIMEWCNEKPE---CPLCRAPITHSSL 347
ES +C +CL +D + CGH+FCW C+ +W +P CP+C+A I+ +
Sbjct: 29 ESGGQDSTFECNICLDTAKDAVISLCGHLFCWPCLHQWLETRPNRQVCPVCKAGISRDKV 88
Query: 348 VCLY 351
+ LY
Sbjct: 89 IPLY 92
>sp|Q5RFK9|RN185_PONAB E3 ubiquitin-protein ligase RNF185 OS=Pongo abelii GN=RNF185 PE=2
SV=1
Length = 192
Score = 55.5 bits (132), Expect = 7e-07, Method: Compositional matrix adjust.
Identities = 22/64 (34%), Positives = 35/64 (54%), Gaps = 3/64 (4%)
Query: 291 ESQAAPGVSKCTLCLSNRQDPTATPCGHVFCWNCIMEWCNEKPE---CPLCRAPITHSSL 347
ES +C +CL +D + CGH+FCW C+ +W +P CP+C+A I+ +
Sbjct: 29 ESGGQDSTFECNICLDTAKDAVISLCGHLFCWPCLHQWLETRPNRQVCPVCKAGISRDKV 88
Query: 348 VCLY 351
+ LY
Sbjct: 89 IPLY 92
>sp|Q96GF1|RN185_HUMAN E3 ubiquitin-protein ligase RNF185 OS=Homo sapiens GN=RNF185 PE=1
SV=1
Length = 192
Score = 55.1 bits (131), Expect = 8e-07, Method: Compositional matrix adjust.
Identities = 22/64 (34%), Positives = 35/64 (54%), Gaps = 3/64 (4%)
Query: 291 ESQAAPGVSKCTLCLSNRQDPTATPCGHVFCWNCIMEWCNEKPE---CPLCRAPITHSSL 347
ES +C +CL +D + CGH+FCW C+ +W +P CP+C+A I+ +
Sbjct: 29 ESGGQDSTFECNICLDTAKDAVISLCGHLFCWPCLHQWLETRPNRQVCPVCKAGISRDKV 88
Query: 348 VCLY 351
+ LY
Sbjct: 89 IPLY 92
>sp|Q5M807|RNF5_RAT E3 ubiquitin-protein ligase RNF5 OS=Rattus norvegicus GN=Rnf5 PE=2
SV=1
Length = 180
Score = 54.7 bits (130), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 25/83 (30%), Positives = 42/83 (50%), Gaps = 6/83 (7%)
Query: 272 LIPSESDKGGWVLDSTSTSESQAAPGVSKCTLCLSNRQDPTATPCGHVFCWNCIMEWCNE 331
+ +E + GG E A +C +CL ++ + CGH++CW C+ +W
Sbjct: 1 MAAAEEEDGG---PEGPNRERGGASATFECNICLETAREAVVSVCGHLYCWPCLHQWLET 57
Query: 332 KP---ECPLCRAPITHSSLVCLY 351
+P ECP+C+A I+ +V LY
Sbjct: 58 RPDRQECPVCKAGISREKVVPLY 80
>sp|O35445|RNF5_MOUSE E3 ubiquitin-protein ligase RNF5 OS=Mus musculus GN=Rnf5 PE=1 SV=1
Length = 180
Score = 54.7 bits (130), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 25/83 (30%), Positives = 42/83 (50%), Gaps = 6/83 (7%)
Query: 272 LIPSESDKGGWVLDSTSTSESQAAPGVSKCTLCLSNRQDPTATPCGHVFCWNCIMEWCNE 331
+ +E + GG E A +C +CL ++ + CGH++CW C+ +W
Sbjct: 1 MAAAEEEDGG---PEGPNRERGGASATFECNICLETAREAVVSVCGHLYCWPCLHQWLET 57
Query: 332 KP---ECPLCRAPITHSSLVCLY 351
+P ECP+C+A I+ +V LY
Sbjct: 58 RPDRQECPVCKAGISREKVVPLY 80
>sp|Q6R567|RMA1_CAPAN E3 ubiquitin-protein ligase RMA1H1 OS=Capsicum annuum GN=RMA1H1
PE=1 SV=1
Length = 252
Score = 54.3 bits (129), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 25/83 (30%), Positives = 41/83 (49%), Gaps = 13/83 (15%)
Query: 280 GGWVLDSTSTSESQAAPGVSKCTLCLSNRQDPTATPCGHVFCWNCIMEWC---------- 329
G W S + + G C +CL +P T CGH++CW CI +W
Sbjct: 22 GKW--KSMNDEVEENISGGFDCNICLDCVHEPVITLCGHLYCWPCIYKWIYFQSVSSENS 79
Query: 330 -NEKPECPLCRAPITHSSLVCLY 351
++P+CP+C+A ++ +L+ LY
Sbjct: 80 DQQQPQCPVCKAEVSEKTLIPLY 102
>sp|Q99942|RNF5_HUMAN E3 ubiquitin-protein ligase RNF5 OS=Homo sapiens GN=RNF5 PE=1 SV=1
Length = 180
Score = 54.3 bits (129), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 25/83 (30%), Positives = 42/83 (50%), Gaps = 6/83 (7%)
Query: 272 LIPSESDKGGWVLDSTSTSESQAAPGVSKCTLCLSNRQDPTATPCGHVFCWNCIMEWCNE 331
+ +E + GG E A +C +CL ++ + CGH++CW C+ +W
Sbjct: 1 MAAAEEEDGG---PEGPNRERGGAGATFECNICLETAREAVVSVCGHLYCWPCLHQWLET 57
Query: 332 KP---ECPLCRAPITHSSLVCLY 351
+P ECP+C+A I+ +V LY
Sbjct: 58 RPERQECPVCKAGISREKVVPLY 80
>sp|Q1L5Z9|LONF2_HUMAN LON peptidase N-terminal domain and RING finger protein 2 OS=Homo
sapiens GN=LONRF2 PE=2 SV=3
Length = 754
Score = 54.3 bits (129), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 34/114 (29%), Positives = 49/114 (42%), Gaps = 11/114 (9%)
Query: 237 RSNLSSIASSVHHTSLGFQQASTGRGLPVLNEEGSLIPSESDKGGWVLDSTSTSESQAAP 296
+ L SI + L Q P LN G IP K L + SE++ +
Sbjct: 384 KKALESILPTAPSAGLKRQFPDDVEDAPDLNAPGK-IP----KKDLSLQRSPNSETEESQ 438
Query: 297 GVS------KCTLCLSNRQDPTATPCGHVFCWNCIMEWCNEKPECPLCRAPITH 344
G+S +C LC+ +P TPCGH FC C+ + P CPLC+ ++
Sbjct: 439 GLSLDVTDFECALCMRLLFEPVTTPCGHTFCLKCLERCLDHAPHCPLCKDKLSE 492
>sp|Q5ZIR9|RN185_CHICK E3 ubiquitin-protein ligase RNF185 OS=Gallus gallus GN=RNF185 PE=2
SV=1
Length = 194
Score = 54.3 bits (129), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 20/55 (36%), Positives = 33/55 (60%), Gaps = 3/55 (5%)
Query: 300 KCTLCLSNRQDPTATPCGHVFCWNCIMEWCNEKPE---CPLCRAPITHSSLVCLY 351
+C +CL +D + CGH+FCW C+ +W +P CP+C+A I+ ++ LY
Sbjct: 40 ECNICLDTAKDAVISLCGHLFCWPCLHQWLETRPNRQVCPVCKAGISRDKVIPLY 94
>sp|Q6PC78|RN185_DANRE E3 ubiquitin-protein ligase RNF185 OS=Danio rerio GN=rnf185 PE=2
SV=1
Length = 194
Score = 53.9 bits (128), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 20/55 (36%), Positives = 33/55 (60%), Gaps = 3/55 (5%)
Query: 300 KCTLCLSNRQDPTATPCGHVFCWNCIMEWCNEKPE---CPLCRAPITHSSLVCLY 351
+C +CL +D + CGH+FCW C+ +W +P CP+C+A I+ ++ LY
Sbjct: 40 ECNICLDTSKDAVISLCGHLFCWPCLHQWLETRPNRQVCPVCKAGISRDKVIPLY 94
>sp|Q09463|RNF5_CAEEL RING finger protein 5 OS=Caenorhabditis elegans GN=rnf-5 PE=1 SV=1
Length = 235
Score = 53.5 bits (127), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 19/55 (34%), Positives = 34/55 (61%), Gaps = 3/55 (5%)
Query: 300 KCTLCLSNRQDPTATPCGHVFCWNCIMEWCNEKPE---CPLCRAPITHSSLVCLY 351
+C +CL +D + CGH+FCW C+ +W + +P CP+C++ I + +V +Y
Sbjct: 25 ECNICLDAAKDAVVSLCGHLFCWPCLSQWLDTRPNNQVCPVCKSAIDGNKVVPIY 79
>sp|Q6BIP2|RAD5_DEBHA DNA repair protein RAD5 OS=Debaryomyces hansenii (strain ATCC 36239
/ CBS 767 / JCM 1990 / NBRC 0083 / IGC 2968) GN=RAD5
PE=3 SV=2
Length = 1190
Score = 52.0 bits (123), Expect = 6e-06, Method: Composition-based stats.
Identities = 25/68 (36%), Positives = 35/68 (51%), Gaps = 15/68 (22%)
Query: 299 SKCTLCLSNRQDPTA------TPCGHVFCWNCIMEWCN------EKPECPLCRAPITHSS 346
S+C++C Q P TPCGH +C NC++E + +KP CP CR PI+
Sbjct: 914 SECSIC---TQSPIPLGEMALTPCGHAYCLNCVLEHFDFQEKNSQKPLCPNCREPISKYK 970
Query: 347 LVCLYHSD 354
+ L H D
Sbjct: 971 IFKLRHRD 978
>sp|Q9UPQ7|PZRN3_HUMAN E3 ubiquitin-protein ligase PDZRN3 OS=Homo sapiens GN=PDZRN3 PE=1
SV=2
Length = 1066
Score = 52.0 bits (123), Expect = 6e-06, Method: Compositional matrix adjust.
Identities = 21/49 (42%), Positives = 28/49 (57%), Gaps = 1/49 (2%)
Query: 300 KCTLCLSNRQDPTATPCGHVFCWNCIMEWCNEKPECPL-CRAPITHSSL 347
KC LC +DP TPCGHVFC C++ W ++ CP CR ++ L
Sbjct: 17 KCALCHKVLEDPLTTPCGHVFCAGCVLPWVVQEGSCPARCRGRLSAKEL 65
>sp|Q69ZS0|PZRN3_MOUSE E3 ubiquitin-protein ligase PDZRN3 OS=Mus musculus GN=Pdzrn3 PE=1
SV=3
Length = 1063
Score = 52.0 bits (123), Expect = 6e-06, Method: Compositional matrix adjust.
Identities = 21/49 (42%), Positives = 28/49 (57%), Gaps = 1/49 (2%)
Query: 300 KCTLCLSNRQDPTATPCGHVFCWNCIMEWCNEKPECPL-CRAPITHSSL 347
KC LC +DP TPCGHVFC C++ W ++ CP CR ++ L
Sbjct: 17 KCALCHKVLEDPLTTPCGHVFCAGCVLPWVVQEGSCPARCRGRLSAKEL 65
>sp|P68907|PZRN3_RAT E3 ubiquitin-protein ligase PDZRN3 OS=Rattus norvegicus GN=Pdzrn3
PE=1 SV=1
Length = 1062
Score = 51.6 bits (122), Expect = 8e-06, Method: Compositional matrix adjust.
Identities = 21/49 (42%), Positives = 28/49 (57%), Gaps = 1/49 (2%)
Query: 300 KCTLCLSNRQDPTATPCGHVFCWNCIMEWCNEKPECP-LCRAPITHSSL 347
KC LC +DP TPCGHVFC C++ W ++ CP CR ++ L
Sbjct: 17 KCALCHKVLEDPLTTPCGHVFCAGCVLPWVVQEGSCPSRCRGRLSAKEL 65
>sp|Q6NTV1|RNFT1_XENLA RING finger and transmembrane domain-containing protein 1
OS=Xenopus laevis GN=rnft1 PE=2 SV=2
Length = 416
Score = 51.6 bits (122), Expect = 9e-06, Method: Compositional matrix adjust.
Identities = 22/60 (36%), Positives = 32/60 (53%)
Query: 287 TSTSESQAAPGVSKCTLCLSNRQDPTATPCGHVFCWNCIMEWCNEKPECPLCRAPITHSS 346
T+ ++ Q + C +C + P A C HVFC CI W N++ CPLCR I++ S
Sbjct: 342 TTATKRQCSEADGMCAICQAEFTKPIALICQHVFCEECISSWFNKEKTCPLCRTLISNHS 401
>sp|P84445|ICP0_EHV1V E3 ubiquitin-protein ligase ICP0 OS=Equine herpesvirus 1 (strain
V592) GN=ICP0 PE=3 SV=1
Length = 532
Score = 50.8 bits (120), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 24/59 (40%), Positives = 33/59 (55%), Gaps = 9/59 (15%)
Query: 300 KCTLCLSNRQDPT----ATPCGHVFCWNCIMEWCNEKPECPLCRAPITHSSLVCLYHSD 354
+C +CL +DP+ A PC H FC+ CI W + P CPLC+ P+ S+V SD
Sbjct: 7 RCPICL---EDPSNYSMALPCLHAFCYVCITRWIRQNPTCPLCKVPV--ESVVHTIESD 60
>sp|P28990|ICP0_EHV1B E3 ubiquitin-protein ligase ICP0 OS=Equine herpesvirus 1 (strain
Ab4p) GN=63 PE=1 SV=1
Length = 532
Score = 50.8 bits (120), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 24/59 (40%), Positives = 33/59 (55%), Gaps = 9/59 (15%)
Query: 300 KCTLCLSNRQDPT----ATPCGHVFCWNCIMEWCNEKPECPLCRAPITHSSLVCLYHSD 354
+C +CL +DP+ A PC H FC+ CI W + P CPLC+ P+ S+V SD
Sbjct: 7 RCPICL---EDPSNYSMALPCLHAFCYVCITRWIRQNPTCPLCKVPV--ESVVHTIESD 60
>sp|Q9VPT5|PEX12_DROME Putative peroxisome assembly protein 12 OS=Drosophila melanogaster
GN=pex12 PE=2 SV=1
Length = 297
Score = 50.8 bits (120), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 24/62 (38%), Positives = 35/62 (56%), Gaps = 1/62 (1%)
Query: 293 QAAPGVSKCTLCLSNRQDPTA-TPCGHVFCWNCIMEWCNEKPECPLCRAPITHSSLVCLY 351
Q+ P +C +CL + Q PTA + G+VFCW CI+ E CP+ PI+ LV +Y
Sbjct: 236 QSLPQRGECPVCLLSIQTPTACSVSGYVFCWKCIVSHMKEHGTCPVTHYPISLDDLVRIY 295
Query: 352 HS 353
+
Sbjct: 296 ET 297
>sp|P29836|ICP0_BHV1K E3 ubiquitin-protein ligase ICP0 OS=Bovine herpesvirus 1.2 (strain
K22) GN=BICP0 PE=3 SV=1
Length = 676
Score = 50.4 bits (119), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 26/62 (41%), Positives = 32/62 (51%), Gaps = 3/62 (4%)
Query: 294 AAPGVSKCTLCLSNRQDPT-ATPCGHVFCWNCIMEWCNEKPECPLCRAPITHSSLVCLYH 352
AAP + C +CL A PC H FC CI W +P CPLC+AP+ SL+
Sbjct: 6 AAPELGSCCICLDAITGAARALPCLHAFCLACIRRWLEGRPTCPLCKAPV--QSLIHSVA 63
Query: 353 SD 354
SD
Sbjct: 64 SD 65
>sp|P29128|ICP0_BHV1J E3 ubiquitin-protein ligase ICP0 OS=Bovine herpesvirus 1.1 (strain
Jura) GN=BICP0 PE=3 SV=1
Length = 676
Score = 50.4 bits (119), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 26/62 (41%), Positives = 32/62 (51%), Gaps = 3/62 (4%)
Query: 294 AAPGVSKCTLCLSNRQDPT-ATPCGHVFCWNCIMEWCNEKPECPLCRAPITHSSLVCLYH 352
AAP + C +CL A PC H FC CI W +P CPLC+AP+ SL+
Sbjct: 6 AAPELGSCCICLDAITGAARALPCLHAFCLACIRRWLEGRPTCPLCKAPV--QSLIHSVA 63
Query: 353 SD 354
SD
Sbjct: 64 SD 65
>sp|Q8BFW4|TRI65_MOUSE Tripartite motif-containing protein 65 OS=Mus musculus GN=Trim65
PE=2 SV=1
Length = 522
Score = 50.1 bits (118), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 21/46 (45%), Positives = 27/46 (58%), Gaps = 1/46 (2%)
Query: 298 VSKCTLCLSNRQDPTATPCGHVFCWNCIME-WCNEKPECPLCRAPI 342
V C++CL +DP PCGH FC NCI + W + + CP CR P
Sbjct: 10 VVTCSICLGRYRDPVTLPCGHSFCGNCIQDSWRSCEKSCPECRQPF 55
>sp|Q6NZ21|RNFT1_DANRE RING finger and transmembrane domain-containing protein 1 OS=Danio
rerio GN=rnft1 PE=2 SV=2
Length = 419
Score = 50.1 bits (118), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 20/60 (33%), Positives = 31/60 (51%)
Query: 284 LDSTSTSESQAAPGVSKCTLCLSNRQDPTATPCGHVFCWNCIMEWCNEKPECPLCRAPIT 343
++ S +Q C +C ++ + P C H+FC CI +W N++ CPLCR IT
Sbjct: 342 VNGAPASPAQIREAGDICPICQADFKQPRVLVCQHIFCEECIAQWLNQERTCPLCRTVIT 401
>sp|Q9NS56|TOPRS_HUMAN E3 ubiquitin-protein ligase Topors OS=Homo sapiens GN=TOPORS PE=1
SV=1
Length = 1045
Score = 49.7 bits (117), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 25/64 (39%), Positives = 35/64 (54%), Gaps = 9/64 (14%)
Query: 292 SQAAPGVSKCTLCLSNRQDPTA--TPCGHVFCWNCIMEWCNEKPECPLCRAPITHSSLVC 349
+ A+P SKC +CL +R D + C H FC+ C+ EW K ECPLC+ P
Sbjct: 95 ADASPD-SKCPICL-DRFDNVSYLDRCLHKFCFRCVQEWSKNKAECPLCKQPFD-----S 147
Query: 350 LYHS 353
++HS
Sbjct: 148 IFHS 151
>sp|Q80Z37|TOPRS_MOUSE E3 ubiquitin-protein ligase Topors OS=Mus musculus GN=Topors PE=1
SV=1
Length = 1033
Score = 49.7 bits (117), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 25/64 (39%), Positives = 35/64 (54%), Gaps = 9/64 (14%)
Query: 292 SQAAPGVSKCTLCLSNRQDPTA--TPCGHVFCWNCIMEWCNEKPECPLCRAPITHSSLVC 349
+ A+P SKC +CL +R D + C H FC+ C+ EW K ECPLC+ P
Sbjct: 96 ADASPD-SKCPICL-DRFDNVSYLDRCLHKFCFRCVQEWSKNKAECPLCKQPFD-----S 148
Query: 350 LYHS 353
++HS
Sbjct: 149 IFHS 152
>sp|Q75EN0|RAD18_ASHGO Postreplication repair E3 ubiquitin-protein ligase RAD18 OS=Ashbya
gossypii (strain ATCC 10895 / CBS 109.51 / FGSC 9923 /
NRRL Y-1056) GN=RAD18 PE=3 SV=1
Length = 443
Score = 49.7 bits (117), Expect = 4e-05, Method: Compositional matrix adjust.
Identities = 26/78 (33%), Positives = 37/78 (47%), Gaps = 5/78 (6%)
Query: 270 GSLIPSESDKGGWVLDSTSTSESQAAPGVSKCTLCLSNRQDPTATPCGHVFCWNCIMEWC 329
G ++ SD G T+ E + +C +C Q P T CGH FC CI E+
Sbjct: 6 GQVVTDPSDFAG-----TTIPELADLDSLLRCHICKDMLQTPVLTQCGHTFCSLCIREYL 60
Query: 330 NEKPECPLCRAPITHSSL 347
N++ CPLC A + + L
Sbjct: 61 NKESRCPLCLAELRQNML 78
>sp|Q9P3U8|YJ95_SCHPO Uncharacterized RING finger protein C548.05c OS=Schizosaccharomyces
pombe (strain 972 / ATCC 24843) GN=SPCC548.05c PE=4 SV=1
Length = 468
Score = 49.3 bits (116), Expect = 4e-05, Method: Compositional matrix adjust.
Identities = 23/73 (31%), Positives = 35/73 (47%), Gaps = 1/73 (1%)
Query: 271 SLIPSESDKGGWVLDSTSTSES-QAAPGVSKCTLCLSNRQDPTATPCGHVFCWNCIMEWC 329
S I S S+ + D+ + E+ Q +C +C Q P T CGH +C+ C++ W
Sbjct: 54 SRISSNSENKKQIPDTKTLLETFQKIKKTLECPICTEALQRPFTTHCGHTYCYECLLNWL 113
Query: 330 NEKPECPLCRAPI 342
E CP CR +
Sbjct: 114 KESKSCPTCRQKL 126
>sp|Q6J6I9|BRCA1_MACMU Breast cancer type 1 susceptibility protein homolog OS=Macaca
mulatta GN=BRCA1 PE=3 SV=1
Length = 1863
Score = 48.9 bits (115), Expect = 5e-05, Method: Composition-based stats.
Identities = 21/57 (36%), Positives = 34/57 (59%), Gaps = 3/57 (5%)
Query: 294 AAPGVSKCTLCLSNRQDPTATPCGHVFCWNCIMEWCNEK---PECPLCRAPITHSSL 347
A + +C +CL ++P +T C H+FC C+++ N+K +CPLC+ IT SL
Sbjct: 17 AMQKILECPICLELIKEPVSTKCDHIFCRFCMLKLLNQKKGPSQCPLCKNDITKRSL 73
>sp|Q9V8P9|TOPRS_DROME E3 ubiquitin-protein ligase Topors OS=Drosophila melanogaster
GN=Topors PE=1 SV=1
Length = 1038
Score = 48.9 bits (115), Expect = 5e-05, Method: Compositional matrix adjust.
Identities = 20/44 (45%), Positives = 25/44 (56%), Gaps = 1/44 (2%)
Query: 300 KCTLCLSN-RQDPTATPCGHVFCWNCIMEWCNEKPECPLCRAPI 342
C +CLS R+ C H FC+ C+ EW KPECPLC+ P
Sbjct: 101 NCAICLSRCRRKCFTDSCMHQFCFKCLCEWSKIKPECPLCKQPF 144
>sp|Q6J6I8|BRCA1_GORGO Breast cancer type 1 susceptibility protein homolog OS=Gorilla
gorilla gorilla GN=BRCA1 PE=3 SV=1
Length = 1863
Score = 48.9 bits (115), Expect = 6e-05, Method: Composition-based stats.
Identities = 21/57 (36%), Positives = 34/57 (59%), Gaps = 3/57 (5%)
Query: 294 AAPGVSKCTLCLSNRQDPTATPCGHVFCWNCIMEWCNEK---PECPLCRAPITHSSL 347
A + +C +CL ++P +T C H+FC C+++ N+K +CPLC+ IT SL
Sbjct: 17 AMQKILECPICLELIKEPVSTKCDHIFCKFCMLKLLNQKKGPSQCPLCKNDITKRSL 73
>sp|Q9GKK8|BRCA1_PANTR Breast cancer type 1 susceptibility protein homolog OS=Pan
troglodytes GN=BRCA1 PE=2 SV=2
Length = 1863
Score = 48.9 bits (115), Expect = 6e-05, Method: Composition-based stats.
Identities = 21/57 (36%), Positives = 34/57 (59%), Gaps = 3/57 (5%)
Query: 294 AAPGVSKCTLCLSNRQDPTATPCGHVFCWNCIMEWCNEK---PECPLCRAPITHSSL 347
A + +C +CL ++P +T C H+FC C+++ N+K +CPLC+ IT SL
Sbjct: 17 AMQKILECPICLELIKEPVSTKCDHIFCKFCMLKLLNQKKGPSQCPLCKNDITKRSL 73
>sp|P38398|BRCA1_HUMAN Breast cancer type 1 susceptibility protein OS=Homo sapiens
GN=BRCA1 PE=1 SV=2
Length = 1863
Score = 48.9 bits (115), Expect = 6e-05, Method: Composition-based stats.
Identities = 21/57 (36%), Positives = 34/57 (59%), Gaps = 3/57 (5%)
Query: 294 AAPGVSKCTLCLSNRQDPTATPCGHVFCWNCIMEWCNEK---PECPLCRAPITHSSL 347
A + +C +CL ++P +T C H+FC C+++ N+K +CPLC+ IT SL
Sbjct: 17 AMQKILECPICLELIKEPVSTKCDHIFCKFCMLKLLNQKKGPSQCPLCKNDITKRSL 73
>sp|Q6J6J0|BRCA1_PONPY Breast cancer type 1 susceptibility protein homolog OS=Pongo
pygmaeus GN=BRCA1 PE=3 SV=1
Length = 1863
Score = 48.9 bits (115), Expect = 6e-05, Method: Composition-based stats.
Identities = 21/57 (36%), Positives = 34/57 (59%), Gaps = 3/57 (5%)
Query: 294 AAPGVSKCTLCLSNRQDPTATPCGHVFCWNCIMEWCNEK---PECPLCRAPITHSSL 347
A + +C +CL ++P +T C H+FC C+++ N+K +CPLC+ IT SL
Sbjct: 17 AMQKILECPICLELIKEPVSTKCDHIFCKFCMLKLLNQKKGPSQCPLCKNDITKRSL 73
>sp|Q864U1|BRCA1_BOVIN Breast cancer type 1 susceptibility protein homolog OS=Bos taurus
GN=BRCA1 PE=1 SV=1
Length = 1849
Score = 48.5 bits (114), Expect = 7e-05, Method: Composition-based stats.
Identities = 21/57 (36%), Positives = 34/57 (59%), Gaps = 3/57 (5%)
Query: 294 AAPGVSKCTLCLSNRQDPTATPCGHVFCWNCIMEWCNEK---PECPLCRAPITHSSL 347
A + +C +CL ++P +T C H+FC C+++ N+K +CPLC+ IT SL
Sbjct: 17 AMQKILECPICLELIKEPVSTKCDHIFCKFCMLKLLNQKKGPSQCPLCKNDITKRSL 73
>sp|O60106|YOXA_SCHPO LON peptidase N-terminal domain and RING finger protein C14F5.10c
OS=Schizosaccharomyces pombe (strain 972 / ATCC 24843)
GN=SPBC14F5.10c PE=4 SV=1
Length = 486
Score = 48.5 bits (114), Expect = 7e-05, Method: Compositional matrix adjust.
Identities = 17/40 (42%), Positives = 24/40 (60%)
Query: 300 KCTLCLSNRQDPTATPCGHVFCWNCIMEWCNEKPECPLCR 339
+C +C DP +PCGH FC C+M+ + P+CP CR
Sbjct: 168 ECQICFGMLYDPVVSPCGHTFCGPCLMQALTQSPQCPTCR 207
>sp|Q9DCN7|RNFT1_MOUSE RING finger and transmembrane domain-containing protein 1 OS=Mus
musculus GN=Rnft1 PE=2 SV=1
Length = 395
Score = 48.5 bits (114), Expect = 8e-05, Method: Compositional matrix adjust.
Identities = 21/54 (38%), Positives = 28/54 (51%)
Query: 290 SESQAAPGVSKCTLCLSNRQDPTATPCGHVFCWNCIMEWCNEKPECPLCRAPIT 343
S+ Q + CT+C + Q P C H+FC CI W N + CPLCR I+
Sbjct: 324 SKRQCSDMDGICTICQAEFQKPVLLFCQHIFCEECITLWFNREKTCPLCRTVIS 377
>sp|Q54N40|PEX12_DICDI Putative peroxisome assembly protein 12 OS=Dictyostelium discoideum
GN=pex12 PE=3 SV=1
Length = 459
Score = 48.5 bits (114), Expect = 8e-05, Method: Compositional matrix adjust.
Identities = 20/53 (37%), Positives = 27/53 (50%)
Query: 301 CTLCLSNRQDPTATPCGHVFCWNCIMEWCNEKPECPLCRAPITHSSLVCLYHS 353
C LCL R +PT G VFC+ CI + NE +CP+ P L +Y +
Sbjct: 406 CPLCLKERTNPTICGSGFVFCYPCIFGYVNEHSKCPITFLPTNTEQLRKIYET 458
Database: swissprot
Posted date: Mar 23, 2013 2:32 AM
Number of letters in database: 191,569,459
Number of sequences in database: 539,616
Lambda K H
0.322 0.135 0.415
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 127,090,787
Number of Sequences: 539616
Number of extensions: 5077006
Number of successful extensions: 12882
Number of sequences better than 100.0: 50
Number of HSP's better than 100.0 without gapping: 525
Number of HSP's successfully gapped in prelim test: 375
Number of HSP's that attempted gapping in prelim test: 12137
Number of HSP's gapped (non-prelim): 976
length of query: 355
length of database: 191,569,459
effective HSP length: 118
effective length of query: 237
effective length of database: 127,894,771
effective search space: 30311060727
effective search space used: 30311060727
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 62 (28.5 bits)