Query 018471
Match_columns 355
No_of_seqs 239 out of 1862
Neff 8.0
Searched_HMMs 46136
Date Fri Mar 29 09:18:06 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/018471.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/018471hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 KOG0317 Predicted E3 ubiquitin 100.0 9.1E-56 2E-60 396.9 17.2 284 10-352 5-293 (293)
2 PF04757 Pex2_Pex12: Pex2 / Pe 100.0 6.7E-31 1.5E-35 239.5 18.6 202 24-238 1-211 (229)
3 KOG2879 Predicted E3 ubiquitin 99.9 1.1E-26 2.3E-31 207.3 10.2 264 17-343 14-287 (298)
4 KOG0826 Predicted E3 ubiquitin 99.6 9.5E-15 2E-19 134.0 16.5 295 16-353 19-356 (357)
5 COG5574 PEX10 RING-finger-cont 99.6 2.8E-16 6.1E-21 140.5 0.5 242 6-350 13-269 (271)
6 KOG0823 Predicted E3 ubiquitin 99.4 5.8E-14 1.3E-18 123.8 4.0 58 295-352 44-104 (230)
7 PLN03208 E3 ubiquitin-protein 99.4 4.7E-13 1E-17 116.2 5.4 57 296-352 16-88 (193)
8 KOG0320 Predicted E3 ubiquitin 99.2 7.4E-12 1.6E-16 106.0 3.1 56 296-351 129-186 (187)
9 smart00504 Ubox Modified RING 99.1 7.4E-11 1.6E-15 85.3 4.6 53 299-351 2-54 (63)
10 PF13923 zf-C3HC4_2: Zinc fing 99.0 2.5E-10 5.4E-15 74.4 2.1 38 301-338 1-39 (39)
11 PF13920 zf-C3HC4_3: Zinc fing 98.9 4.6E-10 9.9E-15 77.4 2.5 46 298-343 2-48 (50)
12 PF15227 zf-C3HC4_4: zinc fing 98.9 4.9E-10 1.1E-14 74.1 2.5 38 301-338 1-42 (42)
13 PF13639 zf-RING_2: Ring finge 98.9 3E-10 6.6E-15 76.1 0.8 40 300-339 2-44 (44)
14 PHA02929 N1R/p28-like protein; 98.9 1.2E-09 2.6E-14 99.0 4.3 48 296-343 172-227 (238)
15 TIGR00599 rad18 DNA repair pro 98.9 1.5E-09 3.3E-14 105.1 4.8 58 294-351 22-79 (397)
16 KOG2164 Predicted E3 ubiquitin 98.8 1.7E-09 3.7E-14 105.5 3.5 56 298-353 186-246 (513)
17 PF04564 U-box: U-box domain; 98.8 2.1E-09 4.6E-14 80.1 2.5 56 296-351 2-58 (73)
18 KOG0287 Postreplication repair 98.7 3E-09 6.5E-14 98.3 0.7 54 296-349 21-74 (442)
19 COG5432 RAD18 RING-finger-cont 98.7 4.8E-09 1E-13 95.1 1.7 53 296-348 23-75 (391)
20 PF00097 zf-C3HC4: Zinc finger 98.7 9E-09 1.9E-13 67.7 2.4 38 301-338 1-41 (41)
21 cd00162 RING RING-finger (Real 98.7 1.9E-08 4.2E-13 66.7 3.6 43 300-342 1-45 (45)
22 PHA02926 zinc finger-like prot 98.7 1.5E-08 3.2E-13 89.2 3.4 48 296-343 168-230 (242)
23 KOG0978 E3 ubiquitin ligase in 98.6 8.3E-09 1.8E-13 105.3 1.4 55 297-351 642-697 (698)
24 smart00184 RING Ring finger. E 98.6 6E-08 1.3E-12 62.1 3.5 38 301-338 1-39 (39)
25 PF14634 zf-RING_5: zinc-RING 98.5 9.4E-08 2E-12 63.9 2.9 41 300-340 1-44 (44)
26 COG5243 HRD1 HRD ubiquitin lig 98.5 9E-08 2E-12 89.7 3.0 49 294-342 283-344 (491)
27 PF13445 zf-RING_UBOX: RING-ty 98.5 8.3E-08 1.8E-12 63.5 1.9 35 301-336 1-43 (43)
28 PF12678 zf-rbx1: RING-H2 zinc 98.4 1.5E-07 3.2E-12 70.1 2.9 40 300-339 21-73 (73)
29 PF14835 zf-RING_6: zf-RING of 98.3 5.1E-08 1.1E-12 69.1 -1.1 52 298-351 7-59 (65)
30 KOG4628 Predicted E3 ubiquitin 98.3 4.8E-07 1E-11 85.8 2.9 46 299-344 230-279 (348)
31 KOG0802 E3 ubiquitin ligase [P 98.2 7.3E-07 1.6E-11 91.3 2.0 54 296-349 289-347 (543)
32 COG5540 RING-finger-containing 98.2 1.3E-06 2.7E-11 80.2 3.1 49 296-344 321-373 (374)
33 KOG0824 Predicted E3 ubiquitin 98.1 1E-06 2.2E-11 80.9 1.9 48 298-345 7-55 (324)
34 KOG4172 Predicted E3 ubiquitin 98.1 4.2E-07 9.1E-12 61.8 -0.7 52 298-351 7-60 (62)
35 KOG4265 Predicted E3 ubiquitin 98.1 3E-06 6.4E-11 79.9 3.8 48 296-343 288-336 (349)
36 TIGR00570 cdk7 CDK-activating 98.0 4.2E-06 9E-11 78.3 4.4 52 298-349 3-60 (309)
37 COG5222 Uncharacterized conser 98.0 1.3E-06 2.8E-11 79.8 -0.4 86 263-348 229-327 (427)
38 COG5152 Uncharacterized conser 97.9 5.7E-06 1.2E-10 71.5 1.7 47 297-343 195-241 (259)
39 KOG2177 Predicted E3 ubiquitin 97.9 5.4E-06 1.2E-10 77.6 1.5 45 296-340 11-55 (386)
40 KOG1734 Predicted RING-contain 97.8 4.3E-06 9.4E-11 75.5 -0.3 53 296-348 222-286 (328)
41 KOG4159 Predicted E3 ubiquitin 97.8 1.3E-05 2.8E-10 78.0 2.8 51 294-344 80-130 (398)
42 PF12861 zf-Apc11: Anaphase-pr 97.7 2.4E-05 5.2E-10 59.2 3.1 31 315-345 51-84 (85)
43 KOG1785 Tyrosine kinase negati 97.7 1.8E-05 3.8E-10 75.2 1.8 57 298-354 369-427 (563)
44 KOG0311 Predicted E3 ubiquitin 97.6 6.3E-06 1.4E-10 77.3 -2.8 49 296-344 41-91 (381)
45 KOG3039 Uncharacterized conser 97.5 7.4E-05 1.6E-09 66.8 3.3 57 296-352 219-279 (303)
46 KOG0828 Predicted E3 ubiquitin 97.5 0.00031 6.7E-09 68.6 7.1 49 296-344 569-635 (636)
47 KOG4692 Predicted E3 ubiquitin 97.4 7E-05 1.5E-09 70.2 2.2 49 295-343 419-467 (489)
48 KOG0297 TNF receptor-associate 97.4 7E-05 1.5E-09 73.6 2.3 54 296-349 19-73 (391)
49 PF04641 Rtf2: Rtf2 RING-finge 97.4 0.00018 3.8E-09 67.0 4.6 57 295-352 110-170 (260)
50 KOG1813 Predicted E3 ubiquitin 97.4 5.4E-05 1.2E-09 69.5 1.1 47 297-343 240-286 (313)
51 KOG4275 Predicted E3 ubiquitin 97.3 1.7E-05 3.6E-10 72.5 -2.9 49 298-352 300-349 (350)
52 PF11789 zf-Nse: Zinc-finger o 97.2 0.00018 4E-09 50.6 1.5 42 296-337 9-53 (57)
53 KOG1002 Nucleotide excision re 97.1 0.00025 5.3E-09 69.8 2.3 51 295-345 533-588 (791)
54 KOG1645 RING-finger-containing 97.0 0.00022 4.8E-09 68.2 1.1 54 298-351 4-64 (463)
55 KOG1571 Predicted E3 ubiquitin 97.0 0.00025 5.4E-09 67.1 1.4 53 294-351 301-353 (355)
56 KOG2660 Locus-specific chromos 96.9 0.0003 6.5E-09 65.8 0.6 49 296-344 13-62 (331)
57 KOG1039 Predicted E3 ubiquitin 96.9 0.00059 1.3E-08 65.3 2.4 48 296-343 159-221 (344)
58 COG5194 APC11 Component of SCF 96.8 0.00073 1.6E-08 49.9 2.3 30 315-344 53-82 (88)
59 PF11793 FANCL_C: FANCL C-term 96.8 0.00026 5.6E-09 52.2 -0.6 47 298-344 2-67 (70)
60 COG5219 Uncharacterized conser 96.7 0.00042 9.1E-09 72.4 0.4 48 296-343 1467-1523(1525)
61 KOG0825 PHD Zn-finger protein 96.6 0.00035 7.6E-09 71.6 -1.4 51 296-346 121-174 (1134)
62 PF14447 Prok-RING_4: Prokaryo 96.6 0.0014 2.9E-08 45.3 1.8 48 297-346 6-53 (55)
63 smart00744 RINGv The RING-vari 96.5 0.0026 5.5E-08 43.4 2.8 40 300-339 1-49 (49)
64 KOG0804 Cytoplasmic Zn-finger 96.4 0.0018 3.9E-08 62.9 2.5 47 295-343 172-222 (493)
65 KOG4739 Uncharacterized protei 96.1 0.0014 3.1E-08 59.0 0.1 54 299-354 4-59 (233)
66 KOG0827 Predicted E3 ubiquitin 96.0 0.0032 6.9E-08 60.1 2.0 50 298-347 4-60 (465)
67 KOG2930 SCF ubiquitin ligase, 96.0 0.0036 7.7E-08 48.7 1.6 28 315-342 80-107 (114)
68 COG5236 Uncharacterized conser 95.5 0.016 3.6E-07 54.5 4.1 49 294-342 57-107 (493)
69 KOG2932 E3 ubiquitin ligase in 95.4 0.0098 2.1E-07 55.2 2.5 44 298-343 90-134 (389)
70 KOG1001 Helicase-like transcri 95.4 0.0035 7.7E-08 65.5 -0.6 48 299-347 455-504 (674)
71 KOG1493 Anaphase-promoting com 95.3 0.0058 1.3E-07 44.9 0.5 30 315-344 50-82 (84)
72 PF14570 zf-RING_4: RING/Ubox 94.8 0.019 4.1E-07 38.7 1.8 42 301-342 1-47 (48)
73 KOG3970 Predicted E3 ubiquitin 94.7 0.022 4.8E-07 50.6 2.5 46 298-343 50-105 (299)
74 COG5175 MOT2 Transcriptional r 94.2 0.029 6.4E-07 52.7 2.4 50 299-348 15-69 (480)
75 KOG2817 Predicted E3 ubiquitin 93.9 0.045 9.8E-07 52.8 2.9 56 296-351 332-393 (394)
76 PF10367 Vps39_2: Vacuolar sor 93.7 0.028 6.1E-07 44.5 1.0 31 296-326 76-108 (109)
77 KOG1814 Predicted E3 ubiquitin 93.3 0.044 9.5E-07 53.0 1.9 34 297-330 183-219 (445)
78 PF07800 DUF1644: Protein of u 93.1 0.1 2.2E-06 44.1 3.4 51 298-348 2-96 (162)
79 KOG4367 Predicted Zn-finger pr 92.9 0.054 1.2E-06 52.6 1.7 35 297-331 3-37 (699)
80 KOG4185 Predicted E3 ubiquitin 92.7 0.074 1.6E-06 50.3 2.5 44 299-342 4-54 (296)
81 PF05290 Baculo_IE-1: Baculovi 92.6 0.098 2.1E-06 42.9 2.7 50 297-346 79-135 (140)
82 KOG1941 Acetylcholine receptor 92.3 0.041 8.9E-07 52.8 0.1 44 297-340 364-413 (518)
83 KOG2114 Vacuolar assembly/sort 90.7 0.12 2.7E-06 54.2 1.6 42 297-341 839-881 (933)
84 KOG3268 Predicted E3 ubiquitin 90.6 0.18 3.9E-06 43.4 2.2 49 297-345 164-230 (234)
85 PHA03096 p28-like protein; Pro 90.4 0.14 3E-06 48.1 1.6 42 299-340 179-231 (284)
86 KOG3113 Uncharacterized conser 90.1 0.3 6.6E-06 44.3 3.4 54 296-351 109-166 (293)
87 KOG3039 Uncharacterized conser 89.7 0.21 4.5E-06 45.2 2.0 34 296-329 41-74 (303)
88 KOG2034 Vacuolar sorting prote 89.4 0.17 3.7E-06 53.5 1.4 34 296-329 815-850 (911)
89 PF10272 Tmpp129: Putative tra 89.1 0.46 1E-05 46.0 4.1 34 316-349 311-357 (358)
90 KOG4445 Uncharacterized conser 88.9 0.11 2.4E-06 48.2 -0.3 48 297-344 114-187 (368)
91 KOG1100 Predicted E3 ubiquitin 88.5 0.2 4.4E-06 44.9 1.1 39 301-343 161-200 (207)
92 KOG3579 Predicted E3 ubiquitin 88.0 0.3 6.6E-06 45.0 1.9 48 296-343 266-328 (352)
93 PHA02825 LAP/PHD finger-like p 87.7 0.65 1.4E-05 39.4 3.6 48 296-344 6-60 (162)
94 KOG1428 Inhibitor of type V ad 87.1 0.3 6.4E-06 54.2 1.5 51 295-345 3483-3546(3738)
95 PF03854 zf-P11: P-11 zinc fin 86.9 0.22 4.8E-06 33.2 0.3 45 299-345 3-48 (50)
96 COG5109 Uncharacterized conser 86.8 0.43 9.4E-06 44.7 2.2 55 297-351 335-395 (396)
97 KOG3002 Zn finger protein [Gen 86.7 0.49 1.1E-05 44.8 2.6 46 295-343 45-91 (299)
98 PF02891 zf-MIZ: MIZ/SP-RING z 86.3 0.46 9.9E-06 32.4 1.6 42 299-341 3-50 (50)
99 KOG0298 DEAD box-containing he 85.7 0.17 3.8E-06 55.4 -1.1 44 297-340 1152-1196(1394)
100 PF08746 zf-RING-like: RING-li 85.2 0.9 2E-05 29.9 2.5 38 301-338 1-43 (43)
101 KOG1940 Zn-finger protein [Gen 84.2 0.55 1.2E-05 43.7 1.6 43 298-340 158-204 (276)
102 KOG3899 Uncharacterized conser 83.7 0.53 1.1E-05 43.7 1.2 35 316-350 325-372 (381)
103 KOG1952 Transcription factor N 83.5 0.76 1.6E-05 48.5 2.4 45 296-340 189-244 (950)
104 PF05883 Baculo_RING: Baculovi 83.3 0.47 1E-05 39.2 0.7 35 298-332 26-69 (134)
105 COG5220 TFB3 Cdk activating ki 83.1 0.36 7.9E-06 43.5 -0.0 46 296-341 8-62 (314)
106 PHA02862 5L protein; Provision 82.6 1.1 2.4E-05 37.4 2.6 45 299-344 3-54 (156)
107 KOG3842 Adaptor protein Pellin 82.0 1.5 3.2E-05 41.3 3.4 49 296-344 339-415 (429)
108 PRK04023 DNA polymerase II lar 81.9 1 2.3E-05 48.6 2.8 52 294-347 622-678 (1121)
109 PF04216 FdhE: Protein involve 79.9 0.26 5.7E-06 46.5 -2.3 46 296-341 170-220 (290)
110 TIGR01562 FdhE formate dehydro 79.5 0.61 1.3E-05 44.3 0.1 46 296-341 182-233 (305)
111 KOG0825 PHD Zn-finger protein 79.3 1.6 3.5E-05 45.8 3.0 47 296-342 94-153 (1134)
112 KOG4362 Transcriptional regula 78.7 0.44 9.6E-06 49.5 -1.2 48 298-345 21-71 (684)
113 PRK03564 formate dehydrogenase 78.5 0.82 1.8E-05 43.4 0.6 45 296-340 185-234 (309)
114 PF06271 RDD: RDD family; Int 78.3 7.9 0.00017 31.3 6.5 39 54-92 52-90 (137)
115 KOG2113 Predicted RNA binding 74.6 2.4 5.3E-05 39.8 2.6 45 297-343 342-387 (394)
116 KOG3161 Predicted E3 ubiquitin 74.1 1.1 2.3E-05 46.0 0.1 39 298-339 11-53 (861)
117 KOG3800 Predicted E3 ubiquitin 71.3 2.5 5.5E-05 39.3 1.8 30 315-344 22-52 (300)
118 KOG1812 Predicted E3 ubiquitin 70.7 2 4.4E-05 42.2 1.2 42 297-338 305-351 (384)
119 PF04710 Pellino: Pellino; In 69.9 1.5 3.2E-05 42.7 0.0 54 297-350 327-409 (416)
120 KOG1815 Predicted E3 ubiquitin 69.5 4.8 0.0001 40.4 3.6 35 296-330 68-103 (444)
121 PF12906 RINGv: RING-variant d 68.8 3.4 7.3E-05 27.7 1.6 38 301-338 1-47 (47)
122 KOG0309 Conserved WD40 repeat- 68.6 2.6 5.7E-05 44.1 1.5 32 312-343 1044-1076(1081)
123 KOG2068 MOT2 transcription fac 68.3 4 8.6E-05 38.8 2.5 47 297-343 248-298 (327)
124 KOG1812 Predicted E3 ubiquitin 67.4 3 6.5E-05 41.0 1.6 34 297-330 145-182 (384)
125 KOG0269 WD40 repeat-containing 65.9 5.7 0.00012 41.8 3.3 51 297-347 778-832 (839)
126 COG5183 SSM4 Protein involved 65.8 5.2 0.00011 42.4 3.0 51 297-347 11-70 (1175)
127 COG0068 HypF Hydrogenase matur 63.6 4.1 8.8E-05 42.7 1.7 49 294-342 97-183 (750)
128 COG4696 Uncharacterized protei 61.1 27 0.00059 29.3 5.8 64 6-69 27-110 (180)
129 PF04088 Peroxin-13_N: Peroxin 59.4 39 0.00085 28.9 6.8 26 91-116 132-157 (158)
130 PF06906 DUF1272: Protein of u 59.3 12 0.00027 26.0 3.0 44 300-345 7-54 (57)
131 KOG0883 Cyclophilin type, U bo 58.5 8.9 0.00019 37.3 2.9 55 297-351 39-93 (518)
132 KOG4718 Non-SMC (structural ma 58.3 5.1 0.00011 35.7 1.2 47 297-343 180-227 (235)
133 KOG3799 Rab3 effector RIM1 and 57.7 3.9 8.4E-05 33.7 0.3 29 296-328 63-91 (169)
134 TIGR00622 ssl1 transcription f 56.9 12 0.00027 30.0 3.1 42 298-339 55-110 (112)
135 PF10235 Cript: Microtubule-as 55.7 8 0.00017 29.8 1.8 37 298-343 44-80 (90)
136 PF07975 C1_4: TFIIH C1-like d 55.0 6.9 0.00015 26.8 1.2 26 314-339 25-50 (51)
137 PRK14714 DNA polymerase II lar 54.4 6.8 0.00015 43.7 1.6 48 297-344 666-721 (1337)
138 KOG0824 Predicted E3 ubiquitin 52.5 4 8.8E-05 38.3 -0.4 48 296-343 103-151 (324)
139 PF15616 TerY-C: TerY-C metal 52.3 6 0.00013 32.7 0.6 43 296-344 75-117 (131)
140 PF10497 zf-4CXXC_R1: Zinc-fin 51.6 11 0.00024 29.9 2.1 25 317-341 37-70 (105)
141 COG3058 FdhE Uncharacterized p 49.8 10 0.00022 35.3 1.8 45 297-341 184-234 (308)
142 KOG0827 Predicted E3 ubiquitin 48.6 1.3 2.7E-05 42.9 -4.4 48 298-345 196-247 (465)
143 PF04710 Pellino: Pellino; In 47.8 6.1 0.00013 38.5 0.0 47 297-343 276-339 (416)
144 smart00064 FYVE Protein presen 47.7 17 0.00037 25.9 2.4 32 298-329 10-45 (68)
145 PF13240 zinc_ribbon_2: zinc-r 47.3 3.5 7.6E-05 23.2 -1.0 7 334-340 15-21 (23)
146 TIGR00143 hypF [NiFe] hydrogen 46.4 9.2 0.0002 40.8 1.1 49 294-342 64-150 (711)
147 KOG2807 RNA polymerase II tran 45.7 15 0.00032 35.0 2.2 43 297-339 329-374 (378)
148 PF07191 zinc-ribbons_6: zinc- 45.6 1.3 2.7E-05 32.4 -3.8 40 299-343 2-41 (70)
149 cd00065 FYVE FYVE domain; Zinc 45.5 16 0.00034 25.0 1.8 31 299-329 3-37 (57)
150 KOG3053 Uncharacterized conser 45.1 12 0.00025 34.4 1.4 49 295-343 17-82 (293)
151 PF03833 PolC_DP2: DNA polymer 44.9 7.2 0.00016 41.7 0.0 49 294-344 651-704 (900)
152 PF06844 DUF1244: Protein of u 43.6 14 0.0003 26.6 1.3 12 319-330 11-22 (68)
153 PF13972 TetR: Bacterial trans 43.0 6.4 0.00014 32.8 -0.6 103 7-118 38-144 (146)
154 PF01363 FYVE: FYVE zinc finge 42.6 4.8 0.0001 28.9 -1.2 31 297-327 8-42 (69)
155 PF10571 UPF0547: Uncharacteri 42.2 8.1 0.00018 22.5 -0.1 7 301-307 3-9 (26)
156 smart00132 LIM Zinc-binding do 41.8 25 0.00054 21.4 2.2 35 300-342 1-37 (39)
157 PF10146 zf-C4H2: Zinc finger- 41.0 20 0.00043 32.7 2.2 24 320-343 196-219 (230)
158 PF14446 Prok-RING_1: Prokaryo 40.7 43 0.00092 23.2 3.3 41 298-342 5-51 (54)
159 KOG4451 Uncharacterized conser 39.5 19 0.00041 32.4 1.8 26 318-343 249-274 (286)
160 COG3813 Uncharacterized protei 39.0 22 0.00048 26.0 1.8 31 317-349 28-58 (84)
161 smart00290 ZnF_UBP Ubiquitin C 38.1 22 0.00047 23.6 1.5 25 300-324 1-25 (50)
162 KOG1729 FYVE finger containing 37.2 16 0.00035 34.4 1.1 47 296-342 166-224 (288)
163 PF13248 zf-ribbon_3: zinc-rib 36.9 6.9 0.00015 22.6 -0.9 8 333-340 17-24 (26)
164 PLN02638 cellulose synthase A 35.8 47 0.001 36.9 4.4 47 297-343 16-70 (1079)
165 KOG2113 Predicted RNA binding 35.6 12 0.00026 35.3 -0.0 47 296-342 134-182 (394)
166 smart00647 IBR In Between Ring 34.9 7.5 0.00016 27.1 -1.2 15 315-329 45-59 (64)
167 COG3132 Uncharacterized protei 34.5 51 0.0011 28.7 3.5 39 39-78 68-115 (215)
168 KOG1814 Predicted E3 ubiquitin 34.2 20 0.00042 35.3 1.1 34 296-329 366-405 (445)
169 PLN02189 cellulose synthase 34.2 32 0.0007 38.0 2.8 47 297-343 33-87 (1040)
170 KOG1356 Putative transcription 33.2 14 0.0003 39.5 -0.1 49 296-344 227-283 (889)
171 PTZ00303 phosphatidylinositol 33.1 27 0.00059 37.2 2.0 30 299-328 461-499 (1374)
172 KOG0802 E3 ubiquitin ligase [P 31.9 33 0.00072 35.4 2.5 49 294-346 475-523 (543)
173 cd00350 rubredoxin_like Rubred 30.9 31 0.00068 21.0 1.3 11 331-341 16-26 (33)
174 KOG2979 Protein involved in DN 29.8 30 0.00065 31.9 1.5 45 297-341 175-222 (262)
175 PF09723 Zn-ribbon_8: Zinc rib 29.3 14 0.00031 24.0 -0.5 27 313-340 8-34 (42)
176 KOG3842 Adaptor protein Pellin 29.3 22 0.00048 33.7 0.5 52 297-351 289-357 (429)
177 PF06750 DiS_P_DiS: Bacterial 29.1 21 0.00045 27.6 0.3 10 334-343 60-69 (92)
178 PF14353 CpXC: CpXC protein 28.7 47 0.001 26.9 2.4 11 333-343 39-49 (128)
179 KOG1609 Protein involved in mR 28.2 68 0.0015 30.1 3.8 48 297-344 77-135 (323)
180 PF00412 LIM: LIM domain; Int 28.1 29 0.00063 23.5 0.9 30 297-326 25-55 (58)
181 PF04423 Rad50_zn_hook: Rad50 27.5 20 0.00043 24.5 -0.1 11 334-344 22-32 (54)
182 KOG1829 Uncharacterized conser 27.5 20 0.00044 37.0 0.0 23 313-338 534-556 (580)
183 PF09889 DUF2116: Uncharacteri 27.3 35 0.00075 24.1 1.1 16 331-346 2-17 (59)
184 PLN02195 cellulose synthase A 26.6 70 0.0015 35.2 3.8 45 298-343 6-59 (977)
185 COG4997 Uncharacterized conser 26.4 1.7E+02 0.0038 22.2 4.7 48 14-65 12-67 (95)
186 KOG2169 Zn-finger transcriptio 26.2 58 0.0013 34.4 3.1 52 296-347 304-360 (636)
187 PF12773 DZR: Double zinc ribb 26.0 60 0.0013 21.5 2.1 12 333-344 30-41 (50)
188 PF14569 zf-UDP: Zinc-binding 25.8 54 0.0012 24.5 1.9 47 297-343 8-62 (80)
189 smart00734 ZnF_Rad18 Rad18-lik 25.6 25 0.00055 20.3 0.2 10 334-343 3-12 (26)
190 PF12132 DUF3587: Protein of u 24.2 59 0.0013 28.9 2.3 22 309-330 152-177 (199)
191 PLN02436 cellulose synthase A 24.1 63 0.0014 35.9 2.9 47 297-343 35-89 (1094)
192 PF02318 FYVE_2: FYVE-type zin 23.9 34 0.00074 27.6 0.7 30 297-326 53-87 (118)
193 PF13824 zf-Mss51: Zinc-finger 23.7 69 0.0015 22.3 2.0 8 301-308 2-9 (55)
194 PLN02915 cellulose synthase A 23.7 97 0.0021 34.4 4.2 47 297-343 14-68 (1044)
195 PLN02400 cellulose synthase 23.7 49 0.0011 36.8 2.0 47 297-343 35-89 (1085)
196 PF09986 DUF2225: Uncharacteri 23.6 24 0.00052 31.7 -0.3 52 297-348 4-64 (214)
197 cd01407 SIR2-fam SIR2 family o 23.3 1.1E+02 0.0025 27.2 4.1 35 311-345 110-146 (218)
198 COG4098 comFA Superfamily II D 23.2 33 0.00072 33.3 0.6 31 296-326 37-68 (441)
199 PF05605 zf-Di19: Drought indu 23.0 27 0.00058 23.8 -0.1 10 334-343 33-42 (54)
200 PRK05978 hypothetical protein; 22.9 56 0.0012 27.6 1.8 33 298-345 33-65 (148)
201 KOG3362 Predicted BBOX Zn-fing 22.5 30 0.00065 29.0 0.1 31 296-327 116-147 (156)
202 KOG1815 Predicted E3 ubiquitin 22.5 31 0.00067 34.6 0.2 19 310-328 178-196 (444)
203 PLN02248 cellulose synthase-li 22.1 64 0.0014 36.0 2.5 32 315-346 149-180 (1135)
204 COG3492 Uncharacterized protei 22.1 37 0.0008 26.1 0.5 12 320-331 43-54 (104)
205 KOG3726 Uncharacterized conser 22.1 56 0.0012 34.3 1.9 40 298-340 654-697 (717)
206 COG4647 AcxC Acetone carboxyla 22.1 42 0.00092 27.5 0.9 22 303-324 62-83 (165)
207 COG1675 TFA1 Transcription ini 21.8 65 0.0014 28.1 2.1 34 297-345 112-145 (176)
208 KOG0396 Uncharacterized conser 21.1 79 0.0017 30.8 2.6 42 310-351 345-387 (389)
209 KOG2042 Ubiquitin fusion degra 20.4 1E+02 0.0022 33.9 3.5 55 296-350 868-923 (943)
210 COG1040 ComFC Predicted amidop 20.2 28 0.00062 31.5 -0.5 50 299-354 25-75 (225)
No 1
>KOG0317 consensus Predicted E3 ubiquitin ligase, integral peroxisomal membrane protein [Posttranslational modification, protein turnover, chaperones]
Probab=100.00 E-value=9.1e-56 Score=396.86 Aligned_cols=284 Identities=35% Similarity=0.654 Sum_probs=224.7
Q ss_pred CCCCCchhhhhhhhhHHHHHHHHHHHHHHHHHhcchhHHHhcHHHHHHHHHHHHHHhhhcCCCCcccccccceEEecCCC
Q 018471 10 PPAAQPEIMRAAEKDEQYASFIYDACRDAFRQLFGTRVAVAYQSETKLVGQMLYYVLTTGSGQQTLGEEYCDITQVVGPQ 89 (355)
Q Consensus 10 p~A~~p~Ilra~QkD~~~~~~L~~~l~~~~~~~~g~r~~~~~~~ei~~~~~lly~~lTt~~g~qTlGeEy~~l~~v~~~~ 89 (355)
+.|++|+|+|+.||||+|.+.+..+++++.+.+.|+|.|++|++|+..+++.+||.+||..+.||+||||++|+++|+.+
T Consensus 5 ~~a~~p~ivr~tq~de~~~~~l~~~~s~~~~~lag~r~~i~~~~~l~~~a~~ly~~~at~~~~~tlgEEy~~i~~~~~~~ 84 (293)
T KOG0317|consen 5 AHADPPEIVRSTQKDEYYIGYLISSLSGLSRTLAGPRAWIRYRKELVLIAEVLYFGFATDARYQTLGEEYVSIIESNPLR 84 (293)
T ss_pred cccCchHHHHHhhhHHHhhhhhhhhhHhHhhhhcchHHHHhhccchhhhhchhhheeehhccccccchhhhhhheecCCc
Confidence 88999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCCCchhHHHHHHHHHhhHHHHHHHHHHHhhcccccccccccCCCCCCCcchhhhHHHHHHHhhhhHHHHHhhcCcchhH
Q 018471 90 RLPPTPARRALFIVYQTAVPYIAERIRYNAAGSSRDQSLETIESPSSSAPRVYSAVSRLKEKLNGLRLYVIRRWPMVLPI 169 (355)
Q Consensus 90 ~~~ps~~rr~~~vll~~~~pyl~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 169 (355)
..+|+..+|..+++++.+.||+..++.+.+....+.. ++ -.| ..+ .++
T Consensus 85 ~~~pssl~~~~~v~~~~v~~~~~~~l~~~l~q~l~~~-------~~-i~p-------~~~-----------------~~~ 132 (293)
T KOG0317|consen 85 LRLPSSLRRIVFVASHLVLPLLLDKLTKKLMQALQSS-------SE-ILP-------QAR-----------------RNF 132 (293)
T ss_pred cccCchhhhHHHHHHHHHHHHHhHHHHHHHHHhhccC-------cc-ccc-------HHH-----------------HHH
Confidence 9999999999999999999999999998877543211 00 000 000 111
Q ss_pred HHHHHHHHHHhhHHHhhcccccchhhhhhcCceEEEecCC----CCCCchhHHHHHHHHHHHHHHHhhhhh-hccccccc
Q 018471 170 VREFLQLVLRANLMFFYFEGLYYHISKRTAGIRYVFIGKP----TNQRPRYQILGVFLLIQLCIIAAEGLR-RSNLSSIA 244 (355)
Q Consensus 170 ~~~~~~~~~~lhl~~Fy~~G~Yy~l~kRi~giryv~~~~~----~~~~~sy~~LG~lll~ql~~~~~~~~r-~~~~~~~~ 244 (355)
+++.+ .+.++|.++||++|.||+|+||++||||++.+-. .+.+..|++||+++++|+.+....+.. ........
T Consensus 133 l~~l~-~v~~~h~~lFY~~g~~y~IskRltgI~yv~~~~~~~~~~~~~q~y~iLg~I~L~ql~~slg~r~~~s~~q~~~s 211 (293)
T KOG0317|consen 133 LRGLF-AVLRAHKALFYINGSFYSISKRLTGIRYVLARTLKGHEANASQPYKILGYILLIQLLLSLGSRLYASFLQHKRS 211 (293)
T ss_pred hhhHH-HHHHHhhheEEecCchHHHHHhhccceEEEEecccccccccccceeeechhhHHHHHHhhhhHHHHHHHhcccc
Confidence 22233 7889999999999999999999999999999733 355678999999999997776554443 11111000
Q ss_pred ccccccccccccccCCCCCcccCCCCCCCCCCCCCCCccccCCCCcccCCCCCCccccccCCCCCCCeEcCCCCccChhH
Q 018471 245 SSVHHTSLGFQQASTGRGLPVLNEEGSLIPSESDKGGWVLDSTSTSESQAAPGVSKCTLCLSNRQDPTATPCGHVFCWNC 324 (355)
Q Consensus 245 ~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~C~iC~~~~~~p~~~~CgH~fC~~C 324 (355)
..++.. +.+.... ......++........+|.+|++.+.+|.++||||+|||.|
T Consensus 212 --------------~~e~~~---e~~~~~~---------~~~~s~~~~~i~~a~~kC~LCLe~~~~pSaTpCGHiFCWsC 265 (293)
T KOG0317|consen 212 --------------STESIE---ESKLNHS---------KLEDSNSLSSIPEATRKCSLCLENRSNPSATPCGHIFCWSC 265 (293)
T ss_pred --------------cccccc---ccccccc---------chhhccCCccCCCCCCceEEEecCCCCCCcCcCcchHHHHH
Confidence 000000 0000000 00011222234567899999999999999999999999999
Q ss_pred HHHHHhcCCCCCCCCCCCCCCCceeccC
Q 018471 325 IMEWCNEKPECPLCRAPITHSSLVCLYH 352 (355)
Q Consensus 325 i~~~~~~~~~CP~Cr~~~~~~~~~~l~~ 352 (355)
|.+|+.++.+||+||..+++++++.|+|
T Consensus 266 I~~w~~ek~eCPlCR~~~~pskvi~Lr~ 293 (293)
T KOG0317|consen 266 ILEWCSEKAECPLCREKFQPSKVICLRH 293 (293)
T ss_pred HHHHHccccCCCcccccCCCcceeeecC
Confidence 9999999999999999999999999986
No 2
>PF04757 Pex2_Pex12: Pex2 / Pex12 amino terminal region; InterPro: IPR006845 This region is the N-terminal part of a number of peroxisomal biogenesis proteins, including Pex2, Pex10 and Pex12, which contain two predicted transmembrane segments. The majority of these proteins have a C-terminal ring finger domain IPR001841 from INTERPRO.; GO: 0007031 peroxisome organization, 0005778 peroxisomal membrane
Probab=99.97 E-value=6.7e-31 Score=239.53 Aligned_cols=202 Identities=30% Similarity=0.400 Sum_probs=163.4
Q ss_pred hHHHHHHHHHHHHHHHHHhc---chhHHHhcHHHHHHHHHHHHHHhhhcCCCCcccccccceEEecCC---C-CCCCchh
Q 018471 24 DEQYASFIYDACRDAFRQLF---GTRVAVAYQSETKLVGQMLYYVLTTGSGQQTLGEEYCDITQVVGP---Q-RLPPTPA 96 (355)
Q Consensus 24 D~~~~~~L~~~l~~~~~~~~---g~r~~~~~~~ei~~~~~lly~~lTt~~g~qTlGeEy~~l~~v~~~---~-~~~ps~~ 96 (355)
|+++.+.|++++.++++.+. |++++.+|.+|+.++++++|+.+|++.++||+||||+||++++.. . +..|+..
T Consensus 1 d~~l~~~L~~~l~~i~~~l~~~~~~~~~~~~~~Ei~~ll~~l~~~~tl~~~~~T~gE~~~~L~r~~~~~~~~~~~~ls~~ 80 (229)
T PF04757_consen 1 DEELESLLKPALSYILQYLAQPRGPRRLLRYFDEIFLLLKLLYESLTLLRGNQTFGEEFYGLKRVNSRSSSRERRPLSRR 80 (229)
T ss_pred ChHHHHHHHHHHHHHHHHHhccccchHHHHHHHHHHHHHHHHHHHHHHhcCCCcHHHHhhCeEEeeccccccccCCCCHH
Confidence 89999999999999999999 999999999999999999999999999999999999999999843 2 6789999
Q ss_pred HHHHHHHHHhhHHHHHHHHHHHhhcccccccccccCCCCCCCcchhhhHHHHHHHhhhhHHHHHhhcCcchhHHHHHHHH
Q 018471 97 RRALFIVYQTAVPYIAERIRYNAAGSSRDQSLETIESPSSSAPRVYSAVSRLKEKLNGLRLYVIRRWPMVLPIVREFLQL 176 (355)
Q Consensus 97 rr~~~vll~~~~pyl~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 176 (355)
+|++++++.+++||+.+|+...+....+........... .....+.+.++ .+.+.++.|.++.+++.
T Consensus 81 ~r~~~l~~~vl~PYl~~Kl~~~~~~~~~~~~~~~~~~~~------~~~~~~~~~~~-------~~~~~~~~~~~~~~~~~ 147 (229)
T PF04757_consen 81 QRLLSLLLLVLGPYLKEKLDSLLERLSERSAESISSRSA------RARRARLKSKL-------KRRFVKLYPYLNALYEL 147 (229)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhcccccccccchhh------hhhhhHHHHHH-------HHHHHHHHHHHHHHHHH
Confidence 999999999999999999999887654322111110000 00001112222 22223367888999999
Q ss_pred HHHhhHHHhhcccc-cchhhhhhcCceEEEecCC-CCCCchhHHHHHHHHHHHHHHHhhhhhhc
Q 018471 177 VLRANLMFFYFEGL-YYHISKRTAGIRYVFIGKP-TNQRPRYQILGVFLLIQLCIIAAEGLRRS 238 (355)
Q Consensus 177 ~~~lhl~~Fy~~G~-Yy~l~kRi~giryv~~~~~-~~~~~sy~~LG~lll~ql~~~~~~~~r~~ 238 (355)
+..+|+++||++|+ |+++++|++||+|++..+. ..+.++|+++|+++++|.+...+..+.+.
T Consensus 148 ~~~~~~~~Fl~~g~~y~s~~~rllgi~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~ 211 (229)
T PF04757_consen 148 LNLLHLLLFLLGGTPYYSPSKRLLGIRYVRLSPSDLQRNPSYEFLGRQLLWQLLSEFLLFLLPL 211 (229)
T ss_pred HHHHHHHHHHhCCCCCCCHHHHHhCcEEEECCccchhhhccHHHHHHHHHHHHHHHHHHHHHHH
Confidence 99999999999999 9999999999999999443 45558999999999999999877665543
No 3
>KOG2879 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=99.94 E-value=1.1e-26 Score=207.27 Aligned_cols=264 Identities=16% Similarity=0.209 Sum_probs=184.4
Q ss_pred hhhhhhhhH-----HHHHHHHHHHHHHHHHhcchhHHHhcHHHHHHHHHHHHHHhhhcCCCCcccccccceEEecCCCCC
Q 018471 17 IMRAAEKDE-----QYASFIYDACRDAFRQLFGTRVAVAYQSETKLVGQMLYYVLTTGSGQQTLGEEYCDITQVVGPQRL 91 (355)
Q Consensus 17 Ilra~QkD~-----~~~~~L~~~l~~~~~~~~g~r~~~~~~~ei~~~~~lly~~lTt~~g~qTlGeEy~~l~~v~~~~~~ 91 (355)
|-|.+|.|+ ++..+|++|+.++|...+ +....+++||++++++.+.+.++.+....|+|+...|++|.++....
T Consensus 14 v~Rv~QlDai~Ldkdls~~l~~qf~~~F~~~~-p~~~~r~epe~~~vl~~~iw~~si~~~~~T~Gqall~v~y~~ek~~~ 92 (298)
T KOG2879|consen 14 VPRVNQLDAILLDKDLSFLLWSQFVSIFLYYK-PGLLLRVEPELDAVLDSAIWFFSIYSVDDTVGQALLNVAYIFEKLPV 92 (298)
T ss_pred ccchhHHHHHHHHHHHHHHHHHHHHHHHHhcC-chhhhhhcHHHhHHHHHHHHheeccCCCCcccchhhhHHhhhccCce
Confidence 556666665 777899999999996666 55567999999999999999999999999999999999998775421
Q ss_pred CCchh-HHHHHHHHHhhHHHHHHHHHHHhhcccccccccccCCCCCCCcchhhhHHHHHHHhhhhHHHHHhhcCcchhHH
Q 018471 92 PPTPA-RRALFIVYQTAVPYIAERIRYNAAGSSRDQSLETIESPSSSAPRVYSAVSRLKEKLNGLRLYVIRRWPMVLPIV 170 (355)
Q Consensus 92 ~ps~~-rr~~~vll~~~~pyl~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 170 (355)
+-... -++.+.+.++++.|..+|..-.+....+. + .-.+.+ .....+
T Consensus 93 ~r~~l~g~IW~~v~sig~~~~~~r~qm~l~r~~~~--------------------~-~~~~~~-----------~~v~~v 140 (298)
T KOG2879|consen 93 LRVVLEGKIWTHVFSIGGSWLEERNQMDLFRAGWV--------------------N-LTPKLI-----------TSVFMV 140 (298)
T ss_pred EEEeecceEEEEeccccCCchhhhhHHHHHHhhhh--------------------h-HHHHHH-----------HHHHHH
Confidence 10000 13444566777777777744111111000 0 001111 123446
Q ss_pred HHHHHHHHHhhHHHhhcccccchhhhhhcCceEEEecCCCCCCchhHHHHHHHHHHHHHHHhhhhhhccccccccc-ccc
Q 018471 171 REFLQLVLRANLMFFYFEGLYYHISKRTAGIRYVFIGKPTNQRPRYQILGVFLLIQLCIIAAEGLRRSNLSSIASS-VHH 249 (355)
Q Consensus 171 ~~~~~~~~~lhl~~Fy~~G~Yy~l~kRi~giryv~~~~~~~~~~sy~~LG~lll~ql~~~~~~~~r~~~~~~~~~~-~~~ 249 (355)
+.+++.+..+||..|+..|+|+|+.++++|+++|+-.+..++.++||++++.|+|+.+...+....+.......+. ...
T Consensus 141 e~i~~~~~~~n~l~fL~~gr~~tlie~il~~~si~~~~~~~R~ig~eY~NReLlW~~F~e~ll~~lp~I~~~k~r~~l~s 220 (298)
T KOG2879|consen 141 EGILKALGMLNLLSFLYRGRMYTLIEAILGLGSILHFPYFNRSIGYEYQNRELLWNAFREVLLLTLPFINFRKLRRVLKS 220 (298)
T ss_pred HHHHHHHHHHHHHHHHHhhhhhHHHHHHhccchhhhcccccchhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 7888889999999999999999999999999999998888889999999999999988776544332221000000 000
Q ss_pred cccccccccCCCCCcccCCCCCCCCCCCCCCCccccCCCCcccCCCCCCccccccCCCCCCCeEcC-CCCccChhHHHHH
Q 018471 250 TSLGFQQASTGRGLPVLNEEGSLIPSESDKGGWVLDSTSTSESQAAPGVSKCTLCLSNRQDPTATP-CGHVFCWNCIMEW 328 (355)
Q Consensus 250 ~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~C~iC~~~~~~p~~~~-CgH~fC~~Ci~~~ 328 (355)
- ..+.+ .++.......+.+..|++|.+.+..|..+. |||+|||.||...
T Consensus 221 w--------------~~~l~----------------~ap~~sss~~t~~~~C~~Cg~~PtiP~~~~~C~HiyCY~Ci~ts 270 (298)
T KOG2879|consen 221 W--------------KLDLD----------------RAPKFSSSTGTSDTECPVCGEPPTIPHVIGKCGHIYCYYCIATS 270 (298)
T ss_pred h--------------ccccc----------------CCCCcccccccCCceeeccCCCCCCCeeeccccceeehhhhhhh
Confidence 0 00000 000001113356789999999999998775 9999999999987
Q ss_pred Hh--cCCCCCCCCCCCC
Q 018471 329 CN--EKPECPLCRAPIT 343 (355)
Q Consensus 329 ~~--~~~~CP~Cr~~~~ 343 (355)
+. ..+.||.|..++.
T Consensus 271 ~~~~asf~Cp~Cg~~~~ 287 (298)
T KOG2879|consen 271 RLWDASFTCPLCGENVE 287 (298)
T ss_pred hcchhhcccCccCCCCc
Confidence 75 4489999999887
No 4
>KOG0826 consensus Predicted E3 ubiquitin ligase involved in peroxisome organization [Posttranslational modification, protein turnover, chaperones]
Probab=99.63 E-value=9.5e-15 Score=134.00 Aligned_cols=295 Identities=16% Similarity=0.238 Sum_probs=179.6
Q ss_pred hhhhhhhhhHHHHHHHHHHHHHHHHHhcchh---HHHhcHHHHHHHHHHHHHHhhhcCCCCcccccccceEEecCC----
Q 018471 16 EIMRAAEKDEQYASFIYDACRDAFRQLFGTR---VAVAYQSETKLVGQMLYYVLTTGSGQQTLGEEYCDITQVVGP---- 88 (355)
Q Consensus 16 ~Ilra~QkD~~~~~~L~~~l~~~~~~~~g~r---~~~~~~~ei~~~~~lly~~lTt~~g~qTlGeEy~~l~~v~~~---- 88 (355)
||+-+.+.|.-+.-.|+--+. +| .++.++ ..++|.+|+-.+++++.-....-.-+.|++|-+-+|.....+
T Consensus 19 Ei~Asq~L~t~lrpAL~~ll~-~~-A~~~~~~~~~l~r~fdE~f~~l~liLq~hyLr~~~sSF~E~fYgLqr~ss~drl~ 96 (357)
T KOG0826|consen 19 EIMASQELDTLLRPALQYLLK-YF-ALRPPRYLLRLLRYFDEWFQALDLILQWHYLRTYNSSFIESFYGLQRISSRDRLT 96 (357)
T ss_pred hhHhhhhHHHhhHHHHHHHHH-HH-HhCCchHHHHHHHHHHHHHHHHHHHHHHHHHhcccccHHHhhhhhhhhhcccccc
Confidence 678899999988887776654 55 445443 358999999999999988777777788999999999876543
Q ss_pred ----CCCCCchhHHHHHHHHHhhHHHHHHHHHHHhhcccccccccccCCCCCCCcchhhhHHHHHHHhhhhHHHHHhhcC
Q 018471 89 ----QRLPPTPARRALFIVYQTAVPYIAERIRYNAAGSSRDQSLETIESPSSSAPRVYSAVSRLKEKLNGLRLYVIRRWP 164 (355)
Q Consensus 89 ----~~~~ps~~rr~~~vll~~~~pyl~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 164 (355)
++..--..+|++.++..|+.||+..|+...+.+..+..... |+++ .++ +..+.+.
T Consensus 97 se~~~~~~l~krQr~~s~~~lv~lPYv~~KL~~i~~k~~e~~~~~---S~e~----------~~~--------~~~~aF~ 155 (357)
T KOG0826|consen 97 SEWPQGLGLNKRQRIVSFLFLVILPYVEAKLDEIYEKLRENNEFS---SDET----------ENK--------RPKRAFL 155 (357)
T ss_pred ccccCCCCcchhHHHHHHHHHHHHHHHHHHHHHHHHHHhhccccc---Cchh----------hhh--------hHHHHHh
Confidence 22333456889999999999999999988776543322211 1111 111 1122233
Q ss_pred cchhHHHHHHHHHHHhhHHHhhccc-ccchhhhhhcCceEEEecCC-------------CCCCchh---------HHHHH
Q 018471 165 MVLPIVREFLQLVLRANLMFFYFEG-LYYHISKRTAGIRYVFIGKP-------------TNQRPRY---------QILGV 221 (355)
Q Consensus 165 ~~~~~~~~~~~~~~~lhl~~Fy~~G-~Yy~l~kRi~giryv~~~~~-------------~~~~~sy---------~~LG~ 221 (355)
...|+++..+....+++.+.|...- .-.++.-++.|+.|-+..+. ....+.+ .+.|.
T Consensus 156 ~~~p~i~~a~els~lvq~l~yIlkrs~~hSPll~lsgv~L~~lt~~dl~a~~~gp~e~~~~~q~~r~t~~e~i~l~~qga 235 (357)
T KOG0826|consen 156 RIYPFIKMALELSKLVQQLRYILKRSSHHSPLLYLSGVQLGTLTPEDLQALEHGPAELSMMDQPARKTVSEKIFLLMQGA 235 (357)
T ss_pred hhhHHHHHHHHHHHHHHHHHHHHHhcccccHHHHHhhcccccccHHHHHHhhccccccchhhhhhhhhhhhhHHHHHHhH
Confidence 4567777778777777766655431 22245568888888765541 0111111 11221
Q ss_pred H--------HHHHHHHHHhhhhhhcccccccccccccccccccccCCCCCcccCCCCCCCCCCCCCCCccccCCCCcccC
Q 018471 222 F--------LLIQLCIIAAEGLRRSNLSSIASSVHHTSLGFQQASTGRGLPVLNEEGSLIPSESDKGGWVLDSTSTSESQ 293 (355)
Q Consensus 222 l--------ll~ql~~~~~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~ 293 (355)
+ .+.+-.+..+.++-+...++.++....+.+. .++++ ++. .+ ..+.. .+.+.
T Consensus 236 L~~~~~~v~~~~stgl~~~vFflqfldWWyssd~~~~~k~-----------~l~~p---~Pp---PP--h~~~~-se~e~ 295 (357)
T KOG0826|consen 236 LKKAVRGVAFSLSTGLSVGVFFLQFLDWWYSSDNQRKIKS-----------TLDPP---IPP---PP--HKQYN-SESEL 295 (357)
T ss_pred HHHHHhhHHHHHHhhHHHHHHHHHHHHHHhcchHHHhhcc-----------CCCCC---CCc---CC--hhhcc-ccccc
Confidence 1 1111111112222222333333221111110 11111 000 00 00000 11112
Q ss_pred CCCCCccccccCCCCCCCeEcC-CCCccChhHHHHHHhcCCCCCCCCCCCCCCCceeccCC
Q 018471 294 AAPGVSKCTLCLSNRQDPTATP-CGHVFCWNCIMEWCNEKPECPLCRAPITHSSLVCLYHS 353 (355)
Q Consensus 294 ~~~~~~~C~iC~~~~~~p~~~~-CgH~fC~~Ci~~~~~~~~~CP~Cr~~~~~~~~~~l~~~ 353 (355)
...+...|++|+....||.++. .|.||||.|+..++.+...||+...+....+++++|+-
T Consensus 296 l~~~~~~CpvClk~r~Nptvl~vSGyVfCY~Ci~~Yv~~~~~CPVT~~p~~v~~l~rl~~~ 356 (357)
T KOG0826|consen 296 LPPDREVCPVCLKKRQNPTVLEVSGYVFCYPCIFSYVVNYGHCPVTGYPASVDHLIRLFNK 356 (357)
T ss_pred CCCccccChhHHhccCCCceEEecceEEeHHHHHHHHHhcCCCCccCCcchHHHHHHHhcC
Confidence 3457789999999999998775 59999999999999999999999999999999998863
No 5
>COG5574 PEX10 RING-finger-containing E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=99.58 E-value=2.8e-16 Score=140.48 Aligned_cols=242 Identities=19% Similarity=0.241 Sum_probs=139.4
Q ss_pred CCCCCCCCCchhhhhhhhhHHHHHHHHHHHHHHHHHhcchhHHHhcHHHHHHHHHHHHHHhhhcCCCCcccccccceEEe
Q 018471 6 TRRFPPAAQPEIMRAAEKDEQYASFIYDACRDAFRQLFGTRVAVAYQSETKLVGQMLYYVLTTGSGQQTLGEEYCDITQV 85 (355)
Q Consensus 6 ~~~fp~A~~p~Ilra~QkD~~~~~~L~~~l~~~~~~~~g~r~~~~~~~ei~~~~~lly~~lTt~~g~qTlGeEy~~l~~v 85 (355)
..+++.|+.+.+++++++ +++ ++++......-+.+.+..+.+..-+++|+.+++ |.|||++|+++-
T Consensus 13 ~lr~~~~~~~~~~Q~~~~---~~g------~~~i~~~~s~~~~n~~~~p~~v~~~~~~~p~~s-----t~~eE~vd~~~~ 78 (271)
T COG5574 13 NLRNKRADLESVRQFAES---IEG------SNAISRRRSRFFSNVPGYPMDVREKILERPSGS-----TSEEEAVDLIAA 78 (271)
T ss_pred heecccccchhHHHHHHH---Hhh------hhhhhhhhhhhcccCCCCccchHHHhcccCccc-----cccchhhhhhhh
Confidence 357788888888888877 333 555656666666788888999999999998887 999999999985
Q ss_pred cC-CCCCCCchhHHHHHHHHHhhHHHHHHHHHHHhhcccccccccccCCCCCCCcchhhhHHHHHHHhhhhHHHHHhhcC
Q 018471 86 VG-PQRLPPTPARRALFIVYQTAVPYIAERIRYNAAGSSRDQSLETIESPSSSAPRVYSAVSRLKEKLNGLRLYVIRRWP 164 (355)
Q Consensus 86 ~~-~~~~~ps~~rr~~~vll~~~~pyl~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 164 (355)
.+ .+.+.-+ + ..+.... + -+.+
T Consensus 79 ~rs~gl~e~~--------------------~-S~~~~~~-------~--ls~~--------------------------- 101 (271)
T COG5574 79 IRSKGLREDS--------------------L-SRFNREE-------T--LSIE--------------------------- 101 (271)
T ss_pred ccccCceecc--------------------c-ccccccc-------c--cccc---------------------------
Confidence 54 1222211 0 1111000 0 0000
Q ss_pred cchhHHHHHHHHHHHhhHHHhhcccccchhhhhhcCceEEEecCCC--CCCc--hhHHHHHHHHHHHHHHHh-------h
Q 018471 165 MVLPIVREFLQLVLRANLMFFYFEGLYYHISKRTAGIRYVFIGKPT--NQRP--RYQILGVFLLIQLCIIAA-------E 233 (355)
Q Consensus 165 ~~~~~~~~~~~~~~~lhl~~Fy~~G~Yy~l~kRi~giryv~~~~~~--~~~~--sy~~LG~lll~ql~~~~~-------~ 233 (355)
.+ .+.....+--+||..|.++.+..+..++++ +-.-.. ...+ .+.+++...+-+...... .
T Consensus 102 --~s-----~e~~~~~e~~~~y~~~~~f~i~~~~i~~~~-~k~t~~~h~as~~~l~~~~~~i~l~~~~~e~~~dlt~~~l 173 (271)
T COG5574 102 --YS-----RETNIDKEGEVLYPCGIFFCIGCDYIWSID-LKQTANTHEASPSQLLKFLPTIRLAMNIPEVISDLTAVAL 173 (271)
T ss_pred --cC-----cccccccccceeeecccccchhhhHHHHHH-HHHhhcCCCCCHHHHhccCCeeecccCChHHHHHHHHHHH
Confidence 00 022334456689999999999999999987 322111 1122 344444322222111100 0
Q ss_pred hhh-hcccccccccccccccccccccCCCCCcccCCCCCCCCCCCCCCCccccCCCCcccCCCCCCccccccCCCCCCCe
Q 018471 234 GLR-RSNLSSIASSVHHTSLGFQQASTGRGLPVLNEEGSLIPSESDKGGWVLDSTSTSESQAAPGVSKCTLCLSNRQDPT 312 (355)
Q Consensus 234 ~~r-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~C~iC~~~~~~p~ 312 (355)
.+. .......+.+... + ....++..+ +.+ ....-......+++|+||++.+..|.
T Consensus 174 ~l~~sr~~~i~q~sn~~--------~--~~~q~Itke------n~s--------~kn~~pfip~~d~kC~lC~e~~~~ps 229 (271)
T COG5574 174 SLDESRLQPILQPSNNL--------H--TLFQVITKE------NLS--------KKNGLPFIPLADYKCFLCLEEPEVPS 229 (271)
T ss_pred hcCchhcCccccccCCc--------c--cceeecccc------ccc--------ccccCCcccccccceeeeecccCCcc
Confidence 000 0000000000000 0 000000000 000 00001112356899999999999999
Q ss_pred EcCCCCccChhHHHH-HHhcCCC-CCCCCCCCCCCCceec
Q 018471 313 ATPCGHVFCWNCIME-WCNEKPE-CPLCRAPITHSSLVCL 350 (355)
Q Consensus 313 ~~~CgH~fC~~Ci~~-~~~~~~~-CP~Cr~~~~~~~~~~l 350 (355)
+++|||+|||.||.. |...+.. ||+||+.+.+++++-+
T Consensus 230 ~t~CgHlFC~~Cl~~~~t~~k~~~CplCRak~~pk~viil 269 (271)
T COG5574 230 CTPCGHLFCLSCLLISWTKKKYEFCPLCRAKVYPKKVIIL 269 (271)
T ss_pred cccccchhhHHHHHHHHHhhccccCchhhhhccchhhhee
Confidence 999999999999999 9888876 9999999999888554
No 6
>KOG0823 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=99.44 E-value=5.8e-14 Score=123.82 Aligned_cols=58 Identities=40% Similarity=1.077 Sum_probs=53.5
Q ss_pred CCCCccccccCCCCCCCeEcCCCCccChhHHHHHHhc---CCCCCCCCCCCCCCCceeccC
Q 018471 295 APGVSKCTLCLSNRQDPTATPCGHVFCWNCIMEWCNE---KPECPLCRAPITHSSLVCLYH 352 (355)
Q Consensus 295 ~~~~~~C~iC~~~~~~p~~~~CgH~fC~~Ci~~~~~~---~~~CP~Cr~~~~~~~~~~l~~ 352 (355)
....+.|.||++..++|+.+.|||+|||.||..|+.. ...||+|+..+...+|+|||.
T Consensus 44 ~~~~FdCNICLd~akdPVvTlCGHLFCWpClyqWl~~~~~~~~cPVCK~~Vs~~~vvPlYG 104 (230)
T KOG0823|consen 44 DGGFFDCNICLDLAKDPVVTLCGHLFCWPCLYQWLQTRPNSKECPVCKAEVSIDTVVPLYG 104 (230)
T ss_pred CCCceeeeeeccccCCCEEeecccceehHHHHHHHhhcCCCeeCCccccccccceEEeeec
Confidence 4678999999999999999999999999999999973 358999999999999999994
No 7
>PLN03208 E3 ubiquitin-protein ligase RMA2; Provisional
Probab=99.38 E-value=4.7e-13 Score=116.18 Aligned_cols=57 Identities=40% Similarity=1.131 Sum_probs=51.6
Q ss_pred CCCccccccCCCCCCCeEcCCCCccChhHHHHHHhc----------------CCCCCCCCCCCCCCCceeccC
Q 018471 296 PGVSKCTLCLSNRQDPTATPCGHVFCWNCIMEWCNE----------------KPECPLCRAPITHSSLVCLYH 352 (355)
Q Consensus 296 ~~~~~C~iC~~~~~~p~~~~CgH~fC~~Ci~~~~~~----------------~~~CP~Cr~~~~~~~~~~l~~ 352 (355)
.++..|+||++..++|+.++|||+|||.||..|+.. ...||.|+..+...+++|||.
T Consensus 16 ~~~~~CpICld~~~dPVvT~CGH~FC~~CI~~wl~~s~~s~~~~~~~~~~k~~~~CPvCR~~Is~~~LvPiyg 88 (193)
T PLN03208 16 GGDFDCNICLDQVRDPVVTLCGHLFCWPCIHKWTYASNNSRQRVDQYDHKREPPKCPVCKSDVSEATLVPIYG 88 (193)
T ss_pred CCccCCccCCCcCCCcEEcCCCchhHHHHHHHHHHhccccccccccccccCCCCcCCCCCCcCChhcEEEeec
Confidence 457899999999999999999999999999999741 358999999999999999995
No 8
>KOG0320 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=99.20 E-value=7.4e-12 Score=105.96 Aligned_cols=56 Identities=41% Similarity=0.961 Sum_probs=51.1
Q ss_pred CCCccccccCCCCCC--CeEcCCCCccChhHHHHHHhcCCCCCCCCCCCCCCCceecc
Q 018471 296 PGVSKCTLCLSNRQD--PTATPCGHVFCWNCIMEWCNEKPECPLCRAPITHSSLVCLY 351 (355)
Q Consensus 296 ~~~~~C~iC~~~~~~--p~~~~CgH~fC~~Ci~~~~~~~~~CP~Cr~~~~~~~~~~l~ 351 (355)
.+...|+||++.... |+.+.|||+||..||+..++....||.|++.++.+++++||
T Consensus 129 ~~~~~CPiCl~~~sek~~vsTkCGHvFC~~Cik~alk~~~~CP~C~kkIt~k~~~rI~ 186 (187)
T KOG0320|consen 129 EGTYKCPICLDSVSEKVPVSTKCGHVFCSQCIKDALKNTNKCPTCRKKITHKQFHRIY 186 (187)
T ss_pred ccccCCCceecchhhccccccccchhHHHHHHHHHHHhCCCCCCcccccchhhheecc
Confidence 356999999998764 67799999999999999999999999999999999999998
No 9
>smart00504 Ubox Modified RING finger domain. Modified RING finger domain, without the full complement of Zn2+-binding ligands. Probable involvement in E2-dependent ubiquitination.
Probab=99.12 E-value=7.4e-11 Score=85.25 Aligned_cols=53 Identities=25% Similarity=0.476 Sum_probs=49.8
Q ss_pred ccccccCCCCCCCeEcCCCCccChhHHHHHHhcCCCCCCCCCCCCCCCceecc
Q 018471 299 SKCTLCLSNRQDPTATPCGHVFCWNCIMEWCNEKPECPLCRAPITHSSLVCLY 351 (355)
Q Consensus 299 ~~C~iC~~~~~~p~~~~CgH~fC~~Ci~~~~~~~~~CP~Cr~~~~~~~~~~l~ 351 (355)
..|+||.+.+.+|+.++|||+||..||..|+..+..||.|++++..++++++.
T Consensus 2 ~~Cpi~~~~~~~Pv~~~~G~v~~~~~i~~~~~~~~~cP~~~~~~~~~~l~~~~ 54 (63)
T smart00504 2 FLCPISLEVMKDPVILPSGQTYERRAIEKWLLSHGTDPVTGQPLTHEDLIPNL 54 (63)
T ss_pred cCCcCCCCcCCCCEECCCCCEEeHHHHHHHHHHCCCCCCCcCCCChhhceeCH
Confidence 57999999999999999999999999999998888999999999999998864
No 10
>PF13923 zf-C3HC4_2: Zinc finger, C3HC4 type (RING finger); PDB: 3HCU_A 2ECI_A 2JMD_A 3HCS_B 3HCT_A 3ZTG_A 2YUR_A 3L11_A.
Probab=98.97 E-value=2.5e-10 Score=74.42 Aligned_cols=38 Identities=47% Similarity=1.344 Sum_probs=33.9
Q ss_pred ccccCCCCCCC-eEcCCCCccChhHHHHHHhcCCCCCCC
Q 018471 301 CTLCLSNRQDP-TATPCGHVFCWNCIMEWCNEKPECPLC 338 (355)
Q Consensus 301 C~iC~~~~~~p-~~~~CgH~fC~~Ci~~~~~~~~~CP~C 338 (355)
|+||++.+.+| +.++|||+||+.|+..|++.+..||.|
T Consensus 1 C~iC~~~~~~~~~~~~CGH~fC~~C~~~~~~~~~~CP~C 39 (39)
T PF13923_consen 1 CPICLDELRDPVVVTPCGHSFCKECIEKYLEKNPKCPVC 39 (39)
T ss_dssp ETTTTSB-SSEEEECTTSEEEEHHHHHHHHHCTSB-TTT
T ss_pred CCCCCCcccCcCEECCCCCchhHHHHHHHHHCcCCCcCC
Confidence 89999999999 689999999999999999888899987
No 11
>PF13920 zf-C3HC4_3: Zinc finger, C3HC4 type (RING finger); PDB: 2YHN_B 2YHO_G 3T6P_A 2CSY_A 2VJE_B 2VJF_B 2HDP_B 2EA5_A 2ECG_A 3EB5_A ....
Probab=98.94 E-value=4.6e-10 Score=77.36 Aligned_cols=46 Identities=39% Similarity=1.023 Sum_probs=41.4
Q ss_pred CccccccCCCCCCCeEcCCCCc-cChhHHHHHHhcCCCCCCCCCCCC
Q 018471 298 VSKCTLCLSNRQDPTATPCGHV-FCWNCIMEWCNEKPECPLCRAPIT 343 (355)
Q Consensus 298 ~~~C~iC~~~~~~p~~~~CgH~-fC~~Ci~~~~~~~~~CP~Cr~~~~ 343 (355)
+..|.||++...+++.+||||. ||..|+..|.+....||.||+++.
T Consensus 2 ~~~C~iC~~~~~~~~~~pCgH~~~C~~C~~~~~~~~~~CP~Cr~~i~ 48 (50)
T PF13920_consen 2 DEECPICFENPRDVVLLPCGHLCFCEECAERLLKRKKKCPICRQPIE 48 (50)
T ss_dssp HSB-TTTSSSBSSEEEETTCEEEEEHHHHHHHHHTTSBBTTTTBB-S
T ss_pred cCCCccCCccCCceEEeCCCChHHHHHHhHHhcccCCCCCcCChhhc
Confidence 5789999999999999999999 999999999999999999999875
No 12
>PF15227 zf-C3HC4_4: zinc finger of C3HC4-type, RING; PDB: 2EGP_A 2ECV_A 2ECJ_A 2YSL_A 2YSJ_A.
Probab=98.94 E-value=4.9e-10 Score=74.11 Aligned_cols=38 Identities=42% Similarity=1.098 Sum_probs=30.3
Q ss_pred ccccCCCCCCCeEcCCCCccChhHHHHHHhcC----CCCCCC
Q 018471 301 CTLCLSNRQDPTATPCGHVFCWNCIMEWCNEK----PECPLC 338 (355)
Q Consensus 301 C~iC~~~~~~p~~~~CgH~fC~~Ci~~~~~~~----~~CP~C 338 (355)
|+||++.+.+|+.++|||+||..||..|.+.. ..||.|
T Consensus 1 CpiC~~~~~~Pv~l~CGH~FC~~Cl~~~~~~~~~~~~~CP~C 42 (42)
T PF15227_consen 1 CPICLDLFKDPVSLPCGHSFCRSCLERLWKEPSGSGFSCPEC 42 (42)
T ss_dssp ETTTTSB-SSEEE-SSSSEEEHHHHHHHHCCSSSST---SSS
T ss_pred CCccchhhCCccccCCcCHHHHHHHHHHHHccCCcCCCCcCC
Confidence 89999999999999999999999999998633 479987
No 13
>PF13639 zf-RING_2: Ring finger domain; PDB: 2KIZ_A 4EPO_C 1IYM_A 2EP4_A 2ECT_A 2JRJ_A 2ECN_A 2ECM_A 3NG2_A 2EA6_A ....
Probab=98.91 E-value=3e-10 Score=76.06 Aligned_cols=40 Identities=43% Similarity=1.137 Sum_probs=34.9
Q ss_pred cccccCCCCC---CCeEcCCCCccChhHHHHHHhcCCCCCCCC
Q 018471 300 KCTLCLSNRQ---DPTATPCGHVFCWNCIMEWCNEKPECPLCR 339 (355)
Q Consensus 300 ~C~iC~~~~~---~p~~~~CgH~fC~~Ci~~~~~~~~~CP~Cr 339 (355)
.|+||++.+. ..+.++|||+||..||.+|++.+..||.||
T Consensus 2 ~C~IC~~~~~~~~~~~~l~C~H~fh~~Ci~~~~~~~~~CP~CR 44 (44)
T PF13639_consen 2 ECPICLEEFEDGEKVVKLPCGHVFHRSCIKEWLKRNNSCPVCR 44 (44)
T ss_dssp CETTTTCBHHTTSCEEEETTSEEEEHHHHHHHHHHSSB-TTTH
T ss_pred CCcCCChhhcCCCeEEEccCCCeeCHHHHHHHHHhCCcCCccC
Confidence 6999999874 457789999999999999999999999996
No 14
>PHA02929 N1R/p28-like protein; Provisional
Probab=98.90 E-value=1.2e-09 Score=98.99 Aligned_cols=48 Identities=38% Similarity=0.968 Sum_probs=41.4
Q ss_pred CCCccccccCCCCCCC--------eEcCCCCccChhHHHHHHhcCCCCCCCCCCCC
Q 018471 296 PGVSKCTLCLSNRQDP--------TATPCGHVFCWNCIMEWCNEKPECPLCRAPIT 343 (355)
Q Consensus 296 ~~~~~C~iC~~~~~~p--------~~~~CgH~fC~~Ci~~~~~~~~~CP~Cr~~~~ 343 (355)
..+..|+||++.+.++ +.++|||+||..||.+|+..+.+||+||.++.
T Consensus 172 ~~~~eC~ICle~~~~~~~~~~~~~vl~~C~H~FC~~CI~~Wl~~~~tCPlCR~~~~ 227 (238)
T PHA02929 172 SKDKECAICMEKVYDKEIKNMYFGILSNCNHVFCIECIDIWKKEKNTCPVCRTPFI 227 (238)
T ss_pred CCCCCCccCCcccccCccccccceecCCCCCcccHHHHHHHHhcCCCCCCCCCEee
Confidence 3468999999986543 45689999999999999999999999999876
No 15
>TIGR00599 rad18 DNA repair protein rad18. This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University).
Probab=98.88 E-value=1.5e-09 Score=105.10 Aligned_cols=58 Identities=33% Similarity=0.684 Sum_probs=50.8
Q ss_pred CCCCCccccccCCCCCCCeEcCCCCccChhHHHHHHhcCCCCCCCCCCCCCCCceecc
Q 018471 294 AAPGVSKCTLCLSNRQDPTATPCGHVFCWNCIMEWCNEKPECPLCRAPITHSSLVCLY 351 (355)
Q Consensus 294 ~~~~~~~C~iC~~~~~~p~~~~CgH~fC~~Ci~~~~~~~~~CP~Cr~~~~~~~~~~l~ 351 (355)
.......|+||.+.+.+|+.++|||.||..||..|+.....||.|+..+...++.+.+
T Consensus 22 ~Le~~l~C~IC~d~~~~PvitpCgH~FCs~CI~~~l~~~~~CP~Cr~~~~~~~Lr~N~ 79 (397)
T TIGR00599 22 PLDTSLRCHICKDFFDVPVLTSCSHTFCSLCIRRCLSNQPKCPLCRAEDQESKLRSNW 79 (397)
T ss_pred ccccccCCCcCchhhhCccCCCCCCchhHHHHHHHHhCCCCCCCCCCccccccCccch
Confidence 4456789999999999999999999999999999998888999999998877665543
No 16
>KOG2164 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=98.84 E-value=1.7e-09 Score=105.48 Aligned_cols=56 Identities=36% Similarity=0.867 Sum_probs=50.3
Q ss_pred CccccccCCCCCCCeEcCCCCccChhHHHHHHhcC-----CCCCCCCCCCCCCCceeccCC
Q 018471 298 VSKCTLCLSNRQDPTATPCGHVFCWNCIMEWCNEK-----PECPLCRAPITHSSLVCLYHS 353 (355)
Q Consensus 298 ~~~C~iC~~~~~~p~~~~CgH~fC~~Ci~~~~~~~-----~~CP~Cr~~~~~~~~~~l~~~ 353 (355)
+..||||++...-|..|.|||+||+.||..++... ..||+|+..+..++|.|+++-
T Consensus 186 ~~~CPICL~~~~~p~~t~CGHiFC~~CiLqy~~~s~~~~~~~CPiC~s~I~~kdl~pv~~e 246 (513)
T KOG2164|consen 186 DMQCPICLEPPSVPVRTNCGHIFCGPCILQYWNYSAIKGPCSCPICRSTITLKDLLPVFIE 246 (513)
T ss_pred CCcCCcccCCCCcccccccCceeeHHHHHHHHhhhcccCCccCCchhhhccccceeeeeec
Confidence 78999999999999999999999999999876522 489999999999999999864
No 17
>PF04564 U-box: U-box domain; InterPro: IPR003613 Quality control of intracellular proteins is essential for cellular homeostasis. Molecular chaperones recognise and contribute to the refolding of misfolded or unfolded proteins, whereas the ubiquitin-proteasome system mediates the degradation of such abnormal proteins. Ubiquitin-protein ligases (E3s) determine the substrate specificity for ubiquitylation and have been classified into HECT and RING-finger families. More recently, however, U-box proteins, which contain a domain (the U box) of about 70 amino acids that is conserved from yeast to humans, have been identified as a new type of E3 []. Members of the U-box family of proteins constitute a class of ubiquitin-protein ligases (E3s) distinct from the HECT-type and RING finger-containing E3 families []. Using yeast two-hybrid technology, all mammalian U-box proteins have been reported to interact with molecular chaperones or co-chaperones, including Hsp90, Hsp70, DnaJc7, EKN1, CRN, and VCP. This suggests that the function of U box-type E3s is to mediate the degradation of unfolded or misfolded proteins in conjunction with molecular chaperones as receptors that recognise such abnormal proteins [, ]. Unlike the RING finger domain, IPR001841 from INTERPRO, that is stabilised by Zn2+ ions coordinated by the cysteines and a histidine, the U-box scaffold is probably stabilised by a system of salt-bridges and hydrogen bonds. The charged and polar residues that participate in this network of bonds are more strongly conserved in the U-box proteins than in classic RING fingers, which supports their role in maintaining the stability of the U box. Thus, the U box appears to have evolved from a RING finger domain by appropriation of a new set of residues required to stabilise its structure, concomitant with the loss of the original, metal-chelating residues [].; GO: 0004842 ubiquitin-protein ligase activity, 0016567 protein ubiquitination, 0000151 ubiquitin ligase complex; PDB: 1T1H_A 2C2L_D 2C2V_V 1WGM_A 2KR4_A 3L1Z_B 3L1X_A 2KRE_A 3M63_A 2QIZ_A ....
Probab=98.81 E-value=2.1e-09 Score=80.09 Aligned_cols=56 Identities=25% Similarity=0.473 Sum_probs=46.4
Q ss_pred CCCccccccCCCCCCCeEcCCCCccChhHHHHHHhc-CCCCCCCCCCCCCCCceecc
Q 018471 296 PGVSKCTLCLSNRQDPTATPCGHVFCWNCIMEWCNE-KPECPLCRAPITHSSLVCLY 351 (355)
Q Consensus 296 ~~~~~C~iC~~~~~~p~~~~CgH~fC~~Ci~~~~~~-~~~CP~Cr~~~~~~~~~~l~ 351 (355)
++.+.|+||.+.+.+|+.++|||+|+..||..|+.. ...||.|++++...+++|.+
T Consensus 2 P~~f~CpIt~~lM~dPVi~~~G~tyer~~I~~~l~~~~~~~P~t~~~l~~~~l~pn~ 58 (73)
T PF04564_consen 2 PDEFLCPITGELMRDPVILPSGHTYERSAIERWLEQNGGTDPFTRQPLSESDLIPNR 58 (73)
T ss_dssp SGGGB-TTTSSB-SSEEEETTSEEEEHHHHHHHHCTTSSB-TTT-SB-SGGGSEE-H
T ss_pred CcccCCcCcCcHhhCceeCCcCCEEcHHHHHHHHHcCCCCCCCCCCcCCcccceECH
Confidence 357899999999999999999999999999999987 78999999999999998864
No 18
>KOG0287 consensus Postreplication repair protein RAD18 [Replication, recombination and repair]
Probab=98.71 E-value=3e-09 Score=98.33 Aligned_cols=54 Identities=35% Similarity=0.811 Sum_probs=50.1
Q ss_pred CCCccccccCCCCCCCeEcCCCCccChhHHHHHHhcCCCCCCCCCCCCCCCcee
Q 018471 296 PGVSKCTLCLSNRQDPTATPCGHVFCWNCIMEWCNEKPECPLCRAPITHSSLVC 349 (355)
Q Consensus 296 ~~~~~C~iC~~~~~~p~~~~CgH~fC~~Ci~~~~~~~~~CP~Cr~~~~~~~~~~ 349 (355)
....+|.||.+.+..|+.+||||.||..||..++..++.||.|..++.+.++.-
T Consensus 21 D~lLRC~IC~eyf~ip~itpCsHtfCSlCIR~~L~~~p~CP~C~~~~~Es~Lr~ 74 (442)
T KOG0287|consen 21 DDLLRCGICFEYFNIPMITPCSHTFCSLCIRKFLSYKPQCPTCCVTVTESDLRN 74 (442)
T ss_pred HHHHHHhHHHHHhcCceeccccchHHHHHHHHHhccCCCCCceecccchhhhhh
Confidence 456899999999999999999999999999999999999999999999887754
No 19
>COG5432 RAD18 RING-finger-containing E3 ubiquitin ligase [Signal transduction mechanisms]
Probab=98.70 E-value=4.8e-09 Score=95.12 Aligned_cols=53 Identities=34% Similarity=0.748 Sum_probs=47.8
Q ss_pred CCCccccccCCCCCCCeEcCCCCccChhHHHHHHhcCCCCCCCCCCCCCCCce
Q 018471 296 PGVSKCTLCLSNRQDPTATPCGHVFCWNCIMEWCNEKPECPLCRAPITHSSLV 348 (355)
Q Consensus 296 ~~~~~C~iC~~~~~~p~~~~CgH~fC~~Ci~~~~~~~~~CP~Cr~~~~~~~~~ 348 (355)
.....|-||.+.+..|..++|||.||+.||..++..++.||+||++..+..+.
T Consensus 23 Ds~lrC~IC~~~i~ip~~TtCgHtFCslCIR~hL~~qp~CP~Cr~~~~esrlr 75 (391)
T COG5432 23 DSMLRCRICDCRISIPCETTCGHTFCSLCIRRHLGTQPFCPVCREDPCESRLR 75 (391)
T ss_pred hhHHHhhhhhheeecceecccccchhHHHHHHHhcCCCCCccccccHHhhhcc
Confidence 45689999999999999999999999999999999999999999988765543
No 20
>PF00097 zf-C3HC4: Zinc finger, C3HC4 type (RING finger); InterPro: IPR018957 Zinc finger (Znf) domains are relatively small protein motifs which contain multiple finger-like protrusions that make tandem contacts with their target molecule. Some of these domains bind zinc, but many do not; instead binding other metals such as iron, or no metal at all. For example, some family members form salt bridges to stabilise the finger-like folds. They were first identified as a DNA-binding motif in transcription factor TFIIIA from Xenopus laevis (African clawed frog), however they are now recognised to bind DNA, RNA, protein and/or lipid substrates [, , , , ]. Their binding properties depend on the amino acid sequence of the finger domains and of the linker between fingers, as well as on the higher-order structures and the number of fingers. Znf domains are often found in clusters, where fingers can have different binding specificities. There are many superfamilies of Znf motifs, varying in both sequence and structure. They display considerable versatility in binding modes, even between members of the same class (e.g. some bind DNA, others protein), suggesting that Znf motifs are stable scaffolds that have evolved specialised functions. For example, Znf-containing proteins function in gene transcription, translation, mRNA trafficking, cytoskeleton organisation, epithelial development, cell adhesion, protein folding, chromatin remodelling and zinc sensing, to name but a few []. Zinc-binding motifs are stable structures, and they rarely undergo conformational changes upon binding their target. The C3HC4 type zinc-finger (RING finger) is a cysteine-rich domain of 40 to 60 residues that coordinates two zinc ions, and has the consensus sequence: C-X2-C-X(9-39)-C-X(1-3)-H-X(2-3)-C-X2-C-X(4-48)-C-X2-C where X is any amino acid []. Many proteins containing a RING finger play a key role in the ubiquitination pathway []. More information about these proteins can be found at Protein of the Month: Zinc Fingers [].; PDB: 1CHC_A 2ECW_A 2Y43_B 1V87_A 2DJB_A 2H0D_B 3RPG_C 3KNV_A 2CKL_B 1JM7_A ....
Probab=98.69 E-value=9e-09 Score=67.70 Aligned_cols=38 Identities=45% Similarity=1.296 Sum_probs=35.0
Q ss_pred ccccCCCCCCCe-EcCCCCccChhHHHHHHh--cCCCCCCC
Q 018471 301 CTLCLSNRQDPT-ATPCGHVFCWNCIMEWCN--EKPECPLC 338 (355)
Q Consensus 301 C~iC~~~~~~p~-~~~CgH~fC~~Ci~~~~~--~~~~CP~C 338 (355)
|+||.+.+.++. .++|||.||..|+..|++ ....||.|
T Consensus 1 C~iC~~~~~~~~~~~~C~H~fC~~C~~~~~~~~~~~~CP~C 41 (41)
T PF00097_consen 1 CPICLEPFEDPVILLPCGHSFCRDCLRKWLENSGSVKCPLC 41 (41)
T ss_dssp ETTTSSBCSSEEEETTTSEEEEHHHHHHHHHHTSSSBTTTT
T ss_pred CCcCCccccCCCEEecCCCcchHHHHHHHHHhcCCccCCcC
Confidence 899999999998 899999999999999998 55789988
No 21
>cd00162 RING RING-finger (Really Interesting New Gene) domain, a specialized type of Zn-finger of 40 to 60 residues that binds two atoms of zinc; defined by the 'cross-brace' motif C-X2-C-X(9-39)-C-X(1-3)- H-X(2-3)-(N/C/H)-X2-C-X(4-48)C-X2-C; probably involved in mediating protein-protein interactions; identified in a proteins with a wide range of functions such as viral replication, signal transduction, and development; has two variants, the C3HC4-type and a C3H2C3-type (RING-H2 finger), which have different cysteine/histidine pattern; a subset of RINGs are associated with B-Boxes (C-X2-H-X7-C-X7-C-X2-C-H-X2-H)
Probab=98.68 E-value=1.9e-08 Score=66.73 Aligned_cols=43 Identities=49% Similarity=1.267 Sum_probs=36.8
Q ss_pred cccccCCCCCCCeEcC-CCCccChhHHHHHHhc-CCCCCCCCCCC
Q 018471 300 KCTLCLSNRQDPTATP-CGHVFCWNCIMEWCNE-KPECPLCRAPI 342 (355)
Q Consensus 300 ~C~iC~~~~~~p~~~~-CgH~fC~~Ci~~~~~~-~~~CP~Cr~~~ 342 (355)
.|+||++.+.++..++ |||.||..|+..|... ...||.|+..+
T Consensus 1 ~C~iC~~~~~~~~~~~~C~H~~c~~C~~~~~~~~~~~Cp~C~~~~ 45 (45)
T cd00162 1 ECPICLEEFREPVVLLPCGHVFCRSCIDKWLKSGKNTCPLCRTPI 45 (45)
T ss_pred CCCcCchhhhCceEecCCCChhcHHHHHHHHHhCcCCCCCCCCcC
Confidence 4999999987776665 9999999999999986 67899998753
No 22
>PHA02926 zinc finger-like protein; Provisional
Probab=98.66 E-value=1.5e-08 Score=89.17 Aligned_cols=48 Identities=27% Similarity=0.818 Sum_probs=38.7
Q ss_pred CCCccccccCCCCCC---------CeEcCCCCccChhHHHHHHhcC------CCCCCCCCCCC
Q 018471 296 PGVSKCTLCLSNRQD---------PTATPCGHVFCWNCIMEWCNEK------PECPLCRAPIT 343 (355)
Q Consensus 296 ~~~~~C~iC~~~~~~---------p~~~~CgH~fC~~Ci~~~~~~~------~~CP~Cr~~~~ 343 (355)
+.+..|+||++.... ++..+|+|.||..||..|...+ ..||.||..+.
T Consensus 168 SkE~eCgICmE~I~eK~~~~eRrFGIL~~CnHsFCl~CIr~Wr~~r~~~~~~rsCPiCR~~f~ 230 (242)
T PHA02926 168 SKEKECGICYEVVYSKRLENDRYFGLLDSCNHIFCITCINIWHRTRRETGASDNCPICRTRFR 230 (242)
T ss_pred cCCCCCccCccccccccccccccccccCCCCchHHHHHHHHHHHhccccCcCCcCCCCcceee
Confidence 457899999987532 3456899999999999998743 35999999876
No 23
>KOG0978 consensus E3 ubiquitin ligase involved in syntaxin degradation [Posttranslational modification, protein turnover, chaperones]
Probab=98.64 E-value=8.3e-09 Score=105.26 Aligned_cols=55 Identities=29% Similarity=0.730 Sum_probs=50.9
Q ss_pred CCccccccCCCCCCCeEcCCCCccChhHHHHHHh-cCCCCCCCCCCCCCCCceecc
Q 018471 297 GVSKCTLCLSNRQDPTATPCGHVFCWNCIMEWCN-EKPECPLCRAPITHSSLVCLY 351 (355)
Q Consensus 297 ~~~~C~iC~~~~~~p~~~~CgH~fC~~Ci~~~~~-~~~~CP~Cr~~~~~~~~~~l~ 351 (355)
.-..|++|...+++.+.+.|||+||..|+.+... ....||.|...|...|+++||
T Consensus 642 ~~LkCs~Cn~R~Kd~vI~kC~H~FC~~Cvq~r~etRqRKCP~Cn~aFganDv~~I~ 697 (698)
T KOG0978|consen 642 ELLKCSVCNTRWKDAVITKCGHVFCEECVQTRYETRQRKCPKCNAAFGANDVHRIH 697 (698)
T ss_pred hceeCCCccCchhhHHHHhcchHHHHHHHHHHHHHhcCCCCCCCCCCCcccccccC
Confidence 5689999999999999999999999999999886 557999999999999999997
No 24
>smart00184 RING Ring finger. E3 ubiquitin-protein ligase activity is intrinsic to the RING domain of c-Cbl and is likely to be a general function of this domain; Various RING fingers exhibit binding activity towards E2 ubiquitin-conjugating enzymes (Ubc' s)
Probab=98.56 E-value=6e-08 Score=62.06 Aligned_cols=38 Identities=45% Similarity=1.330 Sum_probs=34.6
Q ss_pred ccccCCCCCCCeEcCCCCccChhHHHHHHh-cCCCCCCC
Q 018471 301 CTLCLSNRQDPTATPCGHVFCWNCIMEWCN-EKPECPLC 338 (355)
Q Consensus 301 C~iC~~~~~~p~~~~CgH~fC~~Ci~~~~~-~~~~CP~C 338 (355)
|+||++...+++.++|||.||..|+..|.. ....||.|
T Consensus 1 C~iC~~~~~~~~~~~C~H~~c~~C~~~~~~~~~~~CP~C 39 (39)
T smart00184 1 CPICLEELKDPVVLPCGHTFCRSCIRKWLKSGNNTCPIC 39 (39)
T ss_pred CCcCccCCCCcEEecCCChHHHHHHHHHHHhCcCCCCCC
Confidence 789999988999999999999999999997 55679987
No 25
>PF14634 zf-RING_5: zinc-RING finger domain
Probab=98.49 E-value=9.4e-08 Score=63.90 Aligned_cols=41 Identities=34% Similarity=1.056 Sum_probs=34.9
Q ss_pred cccccCCCC---CCCeEcCCCCccChhHHHHHHhcCCCCCCCCC
Q 018471 300 KCTLCLSNR---QDPTATPCGHVFCWNCIMEWCNEKPECPLCRA 340 (355)
Q Consensus 300 ~C~iC~~~~---~~p~~~~CgH~fC~~Ci~~~~~~~~~CP~Cr~ 340 (355)
.|++|.+.+ ..+..++|||+||..|+.........||.|++
T Consensus 1 ~C~~C~~~~~~~~~~~l~~CgH~~C~~C~~~~~~~~~~CP~C~k 44 (44)
T PF14634_consen 1 HCNICFEKYSEERRPRLTSCGHIFCEKCLKKLKGKSVKCPICRK 44 (44)
T ss_pred CCcCcCccccCCCCeEEcccCCHHHHHHHHhhcCCCCCCcCCCC
Confidence 489999887 35788899999999999998756679999975
No 26
>COG5243 HRD1 HRD ubiquitin ligase complex, ER membrane component [Posttranslational modification, protein turnover, chaperones]
Probab=98.46 E-value=9e-08 Score=89.71 Aligned_cols=49 Identities=31% Similarity=0.975 Sum_probs=42.4
Q ss_pred CCCCCccccccCCCCCC-------------CeEcCCCCccChhHHHHHHhcCCCCCCCCCCC
Q 018471 294 AAPGVSKCTLCLSNRQD-------------PTATPCGHVFCWNCIMEWCNEKPECPLCRAPI 342 (355)
Q Consensus 294 ~~~~~~~C~iC~~~~~~-------------p~~~~CgH~fC~~Ci~~~~~~~~~CP~Cr~~~ 342 (355)
...++..|.||++++.. |..+||||+++..|++.|++...+||.||.++
T Consensus 283 l~n~D~~C~ICmde~~h~~~~~~~~~~~~~pKrLpCGHilHl~CLknW~ERqQTCPICr~p~ 344 (491)
T COG5243 283 LTNSDRTCTICMDEMFHPDHEPLPRGLDMTPKRLPCGHILHLHCLKNWLERQQTCPICRRPV 344 (491)
T ss_pred hcCCCCeEEEecccccCCCCccCcccccCCcccccccceeeHHHHHHHHHhccCCCcccCcc
Confidence 34578999999998432 36789999999999999999999999999985
No 27
>PF13445 zf-RING_UBOX: RING-type zinc-finger; PDB: 2CT2_A.
Probab=98.45 E-value=8.3e-08 Score=63.53 Aligned_cols=35 Identities=37% Similarity=1.086 Sum_probs=22.1
Q ss_pred ccccCCCCCC----CeEcCCCCccChhHHHHHHhc----CCCCC
Q 018471 301 CTLCLSNRQD----PTATPCGHVFCWNCIMEWCNE----KPECP 336 (355)
Q Consensus 301 C~iC~~~~~~----p~~~~CgH~fC~~Ci~~~~~~----~~~CP 336 (355)
|+||.+ +.+ |+.++|||+||..|+..+... ...||
T Consensus 1 CpIc~e-~~~~~n~P~~L~CGH~~c~~cl~~l~~~~~~~~~kCP 43 (43)
T PF13445_consen 1 CPICKE-FSTEENPPMVLPCGHVFCKDCLQKLSKKSDRNRFKCP 43 (43)
T ss_dssp -TTT-----TTSS-EEE-SSS-EEEHHHHHHHHHH-S-S-B--T
T ss_pred CCcccc-ccCCCCCCEEEeCccHHHHHHHHHHHhcCCCCeeeCc
Confidence 899999 776 899999999999999999863 34676
No 28
>PF12678 zf-rbx1: RING-H2 zinc finger; InterPro: IPR024766 Zinc finger (Znf) domains are relatively small protein motifs which contain multiple finger-like protrusions that make tandem contacts with their target molecule. Some of these domains bind zinc, but many do not; instead binding other metals such as iron, or no metal at all. For example, some family members form salt bridges to stabilise the finger-like folds. They were first identified as a DNA-binding motif in transcription factor TFIIIA from Xenopus laevis (African clawed frog), however they are now recognised to bind DNA, RNA, protein and/or lipid substrates [, , , , ]. Their binding properties depend on the amino acid sequence of the finger domains and of the linker between fingers, as well as on the higher-order structures and the number of fingers. Znf domains are often found in clusters, where fingers can have different binding specificities. There are many superfamilies of Znf motifs, varying in both sequence and structure. They display considerable versatility in binding modes, even between members of the same class (e.g. some bind DNA, others protein), suggesting that Znf motifs are stable scaffolds that have evolved specialised functions. For example, Znf-containing proteins function in gene transcription, translation, mRNA trafficking, cytoskeleton organisation, epithelial development, cell adhesion, protein folding, chromatin remodelling and zinc sensing, to name but a few []. Zinc-binding motifs are stable structures, and they rarely undergo conformational changes upon binding their target. This domain constitutes a conserved region found in proteins that participate in diverse functions relevant to chromosome metabolism and cell cycle control [].The domain contains 8 cysteine/ histidine residues which are proposed to be the conserved residues involved in zinc binding.; PDB: 4A0C_D 4A0L_I 4A0K_B 2ECL_A 1LDK_C 3RTR_F 3DQV_Y 1U6G_B 1LDJ_B 2HYE_D ....
Probab=98.43 E-value=1.5e-07 Score=70.14 Aligned_cols=40 Identities=43% Similarity=1.222 Sum_probs=33.0
Q ss_pred cccccCCCCCCC-------------eEcCCCCccChhHHHHHHhcCCCCCCCC
Q 018471 300 KCTLCLSNRQDP-------------TATPCGHVFCWNCIMEWCNEKPECPLCR 339 (355)
Q Consensus 300 ~C~iC~~~~~~p-------------~~~~CgH~fC~~Ci~~~~~~~~~CP~Cr 339 (355)
.|+||++.+.++ ...+|||.|+..||..|++.+..||+||
T Consensus 21 ~C~IC~~~l~~~~~~~~~~~~~~~i~~~~C~H~FH~~Ci~~Wl~~~~~CP~CR 73 (73)
T PF12678_consen 21 NCAICREPLEDPCPECQAPQDECPIVWGPCGHIFHFHCISQWLKQNNTCPLCR 73 (73)
T ss_dssp BETTTTSBTTSTTCCHHHCTTTS-EEEETTSEEEEHHHHHHHHTTSSB-TTSS
T ss_pred cccccChhhhChhhhhcCCccccceEecccCCCEEHHHHHHHHhcCCcCCCCC
Confidence 499999988322 2347999999999999999999999997
No 29
>PF14835 zf-RING_6: zf-RING of BARD1-type protein; PDB: 1JM7_B.
Probab=98.35 E-value=5.1e-08 Score=69.13 Aligned_cols=52 Identities=27% Similarity=0.784 Sum_probs=27.2
Q ss_pred CccccccCCCCCCCeE-cCCCCccChhHHHHHHhcCCCCCCCCCCCCCCCceecc
Q 018471 298 VSKCTLCLSNRQDPTA-TPCGHVFCWNCIMEWCNEKPECPLCRAPITHSSLVCLY 351 (355)
Q Consensus 298 ~~~C~iC~~~~~~p~~-~~CgH~fC~~Ci~~~~~~~~~CP~Cr~~~~~~~~~~l~ 351 (355)
-.+|++|.+.+++|+. ..|.|+||+.||..-+. ..||+|..+...+|++-..
T Consensus 7 lLrCs~C~~~l~~pv~l~~CeH~fCs~Ci~~~~~--~~CPvC~~Paw~qD~~~Nr 59 (65)
T PF14835_consen 7 LLRCSICFDILKEPVCLGGCEHIFCSSCIRDCIG--SECPVCHTPAWIQDIQINR 59 (65)
T ss_dssp TTS-SSS-S--SS-B---SSS--B-TTTGGGGTT--TB-SSS--B-S-SS----H
T ss_pred hcCCcHHHHHhcCCceeccCccHHHHHHhHHhcC--CCCCCcCChHHHHHHHhhh
Confidence 4689999999999986 58999999999976433 4699999999988887543
No 30
>KOG4628 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=98.26 E-value=4.8e-07 Score=85.82 Aligned_cols=46 Identities=33% Similarity=0.870 Sum_probs=39.6
Q ss_pred ccccccCCCCCCC---eEcCCCCccChhHHHHHHhcCC-CCCCCCCCCCC
Q 018471 299 SKCTLCLSNRQDP---TATPCGHVFCWNCIMEWCNEKP-ECPLCRAPITH 344 (355)
Q Consensus 299 ~~C~iC~~~~~~p---~~~~CgH~fC~~Ci~~~~~~~~-~CP~Cr~~~~~ 344 (355)
..|+||+|.++.. ..+||+|.|+-.||..|+.+.. .||+|++.+..
T Consensus 230 ~~CaIClEdY~~GdklRiLPC~H~FH~~CIDpWL~~~r~~CPvCK~di~~ 279 (348)
T KOG4628|consen 230 DTCAICLEDYEKGDKLRILPCSHKFHVNCIDPWLTQTRTFCPVCKRDIRT 279 (348)
T ss_pred ceEEEeecccccCCeeeEecCCCchhhccchhhHhhcCccCCCCCCcCCC
Confidence 6999999998854 5689999999999999998774 59999987654
No 31
>KOG0802 consensus E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=98.16 E-value=7.3e-07 Score=91.29 Aligned_cols=54 Identities=30% Similarity=0.765 Sum_probs=46.6
Q ss_pred CCCccccccCCCCCC-----CeEcCCCCccChhHHHHHHhcCCCCCCCCCCCCCCCcee
Q 018471 296 PGVSKCTLCLSNRQD-----PTATPCGHVFCWNCIMEWCNEKPECPLCRAPITHSSLVC 349 (355)
Q Consensus 296 ~~~~~C~iC~~~~~~-----p~~~~CgH~fC~~Ci~~~~~~~~~CP~Cr~~~~~~~~~~ 349 (355)
..+..|+||.+.+.. |..++|||+||..|+..|++....||.||..+.......
T Consensus 289 ~~~~~C~IC~e~l~~~~~~~~~rL~C~Hifh~~CL~~W~er~qtCP~CR~~~~~~~~~~ 347 (543)
T KOG0802|consen 289 LSDELCIICLEELHSGHNITPKRLPCGHIFHDSCLRSWFERQQTCPTCRTVLYDYVLWQ 347 (543)
T ss_pred hcCCeeeeechhhccccccccceeecccchHHHHHHHHHHHhCcCCcchhhhhcccccc
Confidence 457899999999988 789999999999999999999999999999655544433
No 32
>COG5540 RING-finger-containing ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=98.15 E-value=1.3e-06 Score=80.15 Aligned_cols=49 Identities=31% Similarity=0.748 Sum_probs=41.5
Q ss_pred CCCccccccCCCCCC---CeEcCCCCccChhHHHHHHh-cCCCCCCCCCCCCC
Q 018471 296 PGVSKCTLCLSNRQD---PTATPCGHVFCWNCIMEWCN-EKPECPLCRAPITH 344 (355)
Q Consensus 296 ~~~~~C~iC~~~~~~---p~~~~CgH~fC~~Ci~~~~~-~~~~CP~Cr~~~~~ 344 (355)
.....|+||++.+.. -+++||.|.|+-.|+..|+. -+..||.||.++++
T Consensus 321 ~~GveCaICms~fiK~d~~~vlPC~H~FH~~Cv~kW~~~y~~~CPvCrt~iPP 373 (374)
T COG5540 321 DKGVECAICMSNFIKNDRLRVLPCDHRFHVGCVDKWLLGYSNKCPVCRTAIPP 373 (374)
T ss_pred CCCceEEEEhhhhcccceEEEeccCceechhHHHHHHhhhcccCCccCCCCCC
Confidence 345899999998763 36789999999999999997 56799999998875
No 33
>KOG0824 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=98.12 E-value=1e-06 Score=80.86 Aligned_cols=48 Identities=29% Similarity=0.741 Sum_probs=42.6
Q ss_pred CccccccCCCCCCCeEcCCCCccChhHHHHHHhcC-CCCCCCCCCCCCC
Q 018471 298 VSKCTLCLSNRQDPTATPCGHVFCWNCIMEWCNEK-PECPLCRAPITHS 345 (355)
Q Consensus 298 ~~~C~iC~~~~~~p~~~~CgH~fC~~Ci~~~~~~~-~~CP~Cr~~~~~~ 345 (355)
...|+||+.....|+.++|+|.||+-||+...... ..|++||.++++.
T Consensus 7 ~~eC~IC~nt~n~Pv~l~C~HkFCyiCiKGsy~ndk~~CavCR~pids~ 55 (324)
T KOG0824|consen 7 KKECLICYNTGNCPVNLYCFHKFCYICIKGSYKNDKKTCAVCRFPIDST 55 (324)
T ss_pred CCcceeeeccCCcCccccccchhhhhhhcchhhcCCCCCceecCCCCcc
Confidence 56899999999999999999999999999877655 4699999999864
No 34
>KOG4172 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=98.11 E-value=4.2e-07 Score=61.81 Aligned_cols=52 Identities=33% Similarity=0.863 Sum_probs=43.4
Q ss_pred CccccccCCCCCCCeEcCCCCc-cChhHHHHHHh-cCCCCCCCCCCCCCCCceecc
Q 018471 298 VSKCTLCLSNRQDPTATPCGHV-FCWNCIMEWCN-EKPECPLCRAPITHSSLVCLY 351 (355)
Q Consensus 298 ~~~C~iC~~~~~~p~~~~CgH~-fC~~Ci~~~~~-~~~~CP~Cr~~~~~~~~~~l~ 351 (355)
+.+|.||++.+.+.+.-.|||. .|+.|-.+..+ .+..||+||+++. +++.-|
T Consensus 7 ~dECTICye~pvdsVlYtCGHMCmCy~Cg~rl~~~~~g~CPiCRapi~--dvIkTY 60 (62)
T KOG4172|consen 7 SDECTICYEHPVDSVLYTCGHMCMCYACGLRLKKALHGCCPICRAPIK--DVIKTY 60 (62)
T ss_pred ccceeeeccCcchHHHHHcchHHhHHHHHHHHHHccCCcCcchhhHHH--HHHHhh
Confidence 4789999999999999999996 89999887665 5679999999876 555544
No 35
>KOG4265 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=98.06 E-value=3e-06 Score=79.86 Aligned_cols=48 Identities=33% Similarity=0.892 Sum_probs=43.6
Q ss_pred CCCccccccCCCCCCCeEcCCCCc-cChhHHHHHHhcCCCCCCCCCCCC
Q 018471 296 PGVSKCTLCLSNRQDPTATPCGHV-FCWNCIMEWCNEKPECPLCRAPIT 343 (355)
Q Consensus 296 ~~~~~C~iC~~~~~~p~~~~CgH~-fC~~Ci~~~~~~~~~CP~Cr~~~~ 343 (355)
++..+|.||++..++.+.+||.|. .|..|.+...-....||+||+++.
T Consensus 288 ~~gkeCVIClse~rdt~vLPCRHLCLCs~Ca~~Lr~q~n~CPICRqpi~ 336 (349)
T KOG4265|consen 288 ESGKECVICLSESRDTVVLPCRHLCLCSGCAKSLRYQTNNCPICRQPIE 336 (349)
T ss_pred cCCCeeEEEecCCcceEEecchhhehhHhHHHHHHHhhcCCCccccchH
Confidence 557899999999999999999997 899999887767889999999886
No 36
>TIGR00570 cdk7 CDK-activating kinase assembly factor MAT1. All proteins in this family for which functions are known are cyclin dependent protein kinases that are components of TFIIH, a complex that is involved in nucleotide excision repair and transcription initiation. Also known as MAT1 (menage a trois 1). This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University).
Probab=98.05 E-value=4.2e-06 Score=78.30 Aligned_cols=52 Identities=23% Similarity=0.716 Sum_probs=39.6
Q ss_pred CccccccCCCC-CCCe----EcCCCCccChhHHHHHH-hcCCCCCCCCCCCCCCCcee
Q 018471 298 VSKCTLCLSNR-QDPT----ATPCGHVFCWNCIMEWC-NEKPECPLCRAPITHSSLVC 349 (355)
Q Consensus 298 ~~~C~iC~~~~-~~p~----~~~CgH~fC~~Ci~~~~-~~~~~CP~Cr~~~~~~~~~~ 349 (355)
+..||+|.... .+|. ..+|||.||..|+...+ .....||.|+.++....+.+
T Consensus 3 ~~~CP~Ck~~~y~np~~kl~i~~CGH~~C~sCv~~l~~~~~~~CP~C~~~lrk~~fr~ 60 (309)
T TIGR00570 3 DQGCPRCKTTKYRNPSLKLMVNVCGHTLCESCVDLLFVRGSGSCPECDTPLRKNNFRV 60 (309)
T ss_pred CCCCCcCCCCCccCcccccccCCCCCcccHHHHHHHhcCCCCCCCCCCCccchhhccc
Confidence 46899999853 3442 22799999999999965 44568999999998877544
No 37
>COG5222 Uncharacterized conserved protein, contains RING Zn-finger [General function prediction only]
Probab=97.97 E-value=1.3e-06 Score=79.78 Aligned_cols=86 Identities=28% Similarity=0.541 Sum_probs=58.2
Q ss_pred CcccCCCCCCCCCCCCCCCccccCC-------CCcc---cCCCCCCccccccCCCCCCCeEcC-CCCccChhHHHHHHh-
Q 018471 263 LPVLNEEGSLIPSESDKGGWVLDST-------STSE---SQAAPGVSKCTLCLSNRQDPTATP-CGHVFCWNCIMEWCN- 330 (355)
Q Consensus 263 ~~~l~~~~~~~~~~~~~~~~~~~~~-------~~~~---~~~~~~~~~C~iC~~~~~~p~~~~-CgH~fC~~Ci~~~~~- 330 (355)
..+++++|..+..+++.+.|..-.. .+++ .....-...|++|...+.+|+.++ |||.||..||...+.
T Consensus 229 ~imit~EG~yVv~qpdvqsWe~Yq~r~~a~~~~~Dqv~k~~~~~i~LkCplc~~Llrnp~kT~cC~~~fc~eci~~al~d 308 (427)
T COG5222 229 AIMITPEGGYVVAQPDVQSWEKYQQRTKAVAEIPDQVYKMQPPNISLKCPLCHCLLRNPMKTPCCGHTFCDECIGTALLD 308 (427)
T ss_pred ceEEcCCCCeEEeccchHHHHHHHHHHHhhhhCchhhhccCCCCccccCcchhhhhhCcccCccccchHHHHHHhhhhhh
Confidence 3467888888777777777752111 1111 001112489999999999999995 789999999987764
Q ss_pred cCCCCCCC-CCCCCCCCce
Q 018471 331 EKPECPLC-RAPITHSSLV 348 (355)
Q Consensus 331 ~~~~CP~C-r~~~~~~~~~ 348 (355)
..+.||.| |+.+-...+.
T Consensus 309 sDf~CpnC~rkdvlld~l~ 327 (427)
T COG5222 309 SDFKCPNCSRKDVLLDGLT 327 (427)
T ss_pred ccccCCCcccccchhhccC
Confidence 66899999 4444433333
No 38
>COG5152 Uncharacterized conserved protein, contains RING and CCCH-type Zn-fingers [General function prediction only]
Probab=97.87 E-value=5.7e-06 Score=71.47 Aligned_cols=47 Identities=28% Similarity=0.653 Sum_probs=42.7
Q ss_pred CCccccccCCCCCCCeEcCCCCccChhHHHHHHhcCCCCCCCCCCCC
Q 018471 297 GVSKCTLCLSNRQDPTATPCGHVFCWNCIMEWCNEKPECPLCRAPIT 343 (355)
Q Consensus 297 ~~~~C~iC~~~~~~p~~~~CgH~fC~~Ci~~~~~~~~~CP~Cr~~~~ 343 (355)
-.+.|.||.+.+..|+++.|||.||..|...-.+...+|-.|.+...
T Consensus 195 IPF~C~iCKkdy~spvvt~CGH~FC~~Cai~~y~kg~~C~~Cgk~t~ 241 (259)
T COG5152 195 IPFLCGICKKDYESPVVTECGHSFCSLCAIRKYQKGDECGVCGKATY 241 (259)
T ss_pred CceeehhchhhccchhhhhcchhHHHHHHHHHhccCCcceecchhhc
Confidence 36899999999999999999999999999988888899999987654
No 39
>KOG2177 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=97.85 E-value=5.4e-06 Score=77.58 Aligned_cols=45 Identities=33% Similarity=0.893 Sum_probs=40.5
Q ss_pred CCCccccccCCCCCCCeEcCCCCccChhHHHHHHhcCCCCCCCCC
Q 018471 296 PGVSKCTLCLSNRQDPTATPCGHVFCWNCIMEWCNEKPECPLCRA 340 (355)
Q Consensus 296 ~~~~~C~iC~~~~~~p~~~~CgH~fC~~Ci~~~~~~~~~CP~Cr~ 340 (355)
.+...|+||++.+..|..++|||.||..|+..+......||.||.
T Consensus 11 ~~~~~C~iC~~~~~~p~~l~C~H~~c~~C~~~~~~~~~~Cp~cr~ 55 (386)
T KOG2177|consen 11 QEELTCPICLEYFREPVLLPCGHNFCRACLTRSWEGPLSCPVCRP 55 (386)
T ss_pred cccccChhhHHHhhcCccccccchHhHHHHHHhcCCCcCCcccCC
Confidence 467899999999999999999999999999998775579999993
No 40
>KOG1734 consensus Predicted RING-containing E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=97.79 E-value=4.3e-06 Score=75.49 Aligned_cols=53 Identities=28% Similarity=0.701 Sum_probs=42.8
Q ss_pred CCCccccccCCCCC----------CCeEcCCCCccChhHHHHHHh--cCCCCCCCCCCCCCCCce
Q 018471 296 PGVSKCTLCLSNRQ----------DPTATPCGHVFCWNCIMEWCN--EKPECPLCRAPITHSSLV 348 (355)
Q Consensus 296 ~~~~~C~iC~~~~~----------~p~~~~CgH~fC~~Ci~~~~~--~~~~CP~Cr~~~~~~~~~ 348 (355)
.++..|++|...+. +...+.|+|+|+..||+.|+. .++.||.|++.+..+++.
T Consensus 222 l~d~vCaVCg~~~~~s~~eegvienty~LsCnHvFHEfCIrGWcivGKkqtCPYCKekVdl~rmf 286 (328)
T KOG1734|consen 222 LSDSVCAVCGQQIDVSVDEEGVIENTYKLSCNHVFHEFCIRGWCIVGKKQTCPYCKEKVDLKRMF 286 (328)
T ss_pred CCcchhHhhcchheeecchhhhhhhheeeecccchHHHhhhhheeecCCCCCchHHHHhhHhhhc
Confidence 35679999987653 345779999999999999985 567999999988876554
No 41
>KOG4159 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=97.78 E-value=1.3e-05 Score=78.02 Aligned_cols=51 Identities=33% Similarity=0.845 Sum_probs=46.1
Q ss_pred CCCCCccccccCCCCCCCeEcCCCCccChhHHHHHHhcCCCCCCCCCCCCC
Q 018471 294 AAPGVSKCTLCLSNRQDPTATPCGHVFCWNCIMEWCNEKPECPLCRAPITH 344 (355)
Q Consensus 294 ~~~~~~~C~iC~~~~~~p~~~~CgH~fC~~Ci~~~~~~~~~CP~Cr~~~~~ 344 (355)
+...++.|.+|...+.+|+.+||||.||..||.+-+.....||.||..+..
T Consensus 80 ~~~sef~c~vc~~~l~~pv~tpcghs~c~~Cl~r~ld~~~~cp~Cr~~l~e 130 (398)
T KOG4159|consen 80 EIRSEFECCVCSRALYPPVVTPCGHSFCLECLDRSLDQETECPLCRDELVE 130 (398)
T ss_pred cccchhhhhhhHhhcCCCccccccccccHHHHHHHhccCCCCccccccccc
Confidence 346789999999999999999999999999999977788999999998874
No 42
>PF12861 zf-Apc11: Anaphase-promoting complex subunit 11 RING-H2 finger
Probab=97.74 E-value=2.4e-05 Score=59.18 Aligned_cols=31 Identities=39% Similarity=1.086 Sum_probs=26.6
Q ss_pred CCCCccChhHHHHHHhc---CCCCCCCCCCCCCC
Q 018471 315 PCGHVFCWNCIMEWCNE---KPECPLCRAPITHS 345 (355)
Q Consensus 315 ~CgH~fC~~Ci~~~~~~---~~~CP~Cr~~~~~~ 345 (355)
.|+|.|+..||..|+.. +..||+||++...+
T Consensus 51 ~C~H~FH~hCI~kWl~~~~~~~~CPmCR~~w~~k 84 (85)
T PF12861_consen 51 KCSHNFHMHCILKWLSTQSSKGQCPMCRQPWKFK 84 (85)
T ss_pred cCccHHHHHHHHHHHccccCCCCCCCcCCeeeeC
Confidence 69999999999999974 47999999987643
No 43
>KOG1785 consensus Tyrosine kinase negative regulator CBL [Defense mechanisms]
Probab=97.67 E-value=1.8e-05 Score=75.22 Aligned_cols=57 Identities=33% Similarity=0.859 Sum_probs=47.5
Q ss_pred CccccccCCCCCCCeEcCCCCccChhHHHHHHh--cCCCCCCCCCCCCCCCceeccCCC
Q 018471 298 VSKCTLCLSNRQDPTATPCGHVFCWNCIMEWCN--EKPECPLCRAPITHSSLVCLYHSD 354 (355)
Q Consensus 298 ~~~C~iC~~~~~~p~~~~CgH~fC~~Ci~~~~~--~~~~CP~Cr~~~~~~~~~~l~~~~ 354 (355)
-..|.||.+.-++-.+-||||..|-.|+..|.. +...||.||.++...+-+-++.+|
T Consensus 369 FeLCKICaendKdvkIEPCGHLlCt~CLa~WQ~sd~gq~CPFCRcEIKGte~viid~F~ 427 (563)
T KOG1785|consen 369 FELCKICAENDKDVKIEPCGHLLCTSCLAAWQDSDEGQTCPFCRCEIKGTEPVIIDPFD 427 (563)
T ss_pred HHHHHHhhccCCCcccccccchHHHHHHHhhcccCCCCCCCceeeEeccccceeeeccC
Confidence 457999999988888889999999999999985 357999999999876666565544
No 44
>KOG0311 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=97.56 E-value=6.3e-06 Score=77.30 Aligned_cols=49 Identities=33% Similarity=0.720 Sum_probs=41.5
Q ss_pred CCCccccccCCCCCCCeEc-CCCCccChhHHHHHHh-cCCCCCCCCCCCCC
Q 018471 296 PGVSKCTLCLSNRQDPTAT-PCGHVFCWNCIMEWCN-EKPECPLCRAPITH 344 (355)
Q Consensus 296 ~~~~~C~iC~~~~~~p~~~-~CgH~fC~~Ci~~~~~-~~~~CP~Cr~~~~~ 344 (355)
..+..|+||++.++..+.+ .|+|.||..||...++ .+.+||.||+.+..
T Consensus 41 ~~~v~c~icl~llk~tmttkeClhrfc~~ci~~a~r~gn~ecptcRk~l~S 91 (381)
T KOG0311|consen 41 DIQVICPICLSLLKKTMTTKECLHRFCFDCIWKALRSGNNECPTCRKKLVS 91 (381)
T ss_pred hhhhccHHHHHHHHhhcccHHHHHHHHHHHHHHHHHhcCCCCchHHhhccc
Confidence 4678999999998877665 5999999999988776 55799999998764
No 45
>KOG3039 consensus Uncharacterized conserved protein [Function unknown]
Probab=97.51 E-value=7.4e-05 Score=66.83 Aligned_cols=57 Identities=16% Similarity=0.335 Sum_probs=50.5
Q ss_pred CCCccccccCCCCCCC----eEcCCCCccChhHHHHHHhcCCCCCCCCCCCCCCCceeccC
Q 018471 296 PGVSKCTLCLSNRQDP----TATPCGHVFCWNCIMEWCNEKPECPLCRAPITHSSLVCLYH 352 (355)
Q Consensus 296 ~~~~~C~iC~~~~~~p----~~~~CgH~fC~~Ci~~~~~~~~~CP~Cr~~~~~~~~~~l~~ 352 (355)
+..+.||+|.+.+.|. +.-|||||+|+.|....+.....||+|..++.+.+|++|-.
T Consensus 219 s~ryiCpvtrd~LtNt~~ca~Lr~sg~Vv~~ecvEklir~D~v~pv~d~plkdrdiI~Lqr 279 (303)
T KOG3039|consen 219 SKRYICPVTRDTLTNTTPCAVLRPSGHVVTKECVEKLIRKDMVDPVTDKPLKDRDIIGLQR 279 (303)
T ss_pred ccceecccchhhhcCccceEEeccCCcEeeHHHHHHhccccccccCCCCcCcccceEeeec
Confidence 4689999999998874 33489999999999999999999999999999999999853
No 46
>KOG0828 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=97.46 E-value=0.00031 Score=68.63 Aligned_cols=49 Identities=31% Similarity=0.920 Sum_probs=39.5
Q ss_pred CCCccccccCCCCC-----------------CCeEcCCCCccChhHHHHHHh-cCCCCCCCCCCCCC
Q 018471 296 PGVSKCTLCLSNRQ-----------------DPTATPCGHVFCWNCIMEWCN-EKPECPLCRAPITH 344 (355)
Q Consensus 296 ~~~~~C~iC~~~~~-----------------~p~~~~CgH~fC~~Ci~~~~~-~~~~CP~Cr~~~~~ 344 (355)
.....|+||+.+.. +-..+||.|+|+..|+..|.. -+-.||.||.+++.
T Consensus 569 ~~t~dC~ICMt~I~l~~~~s~~~~~~~~~~~nYm~tPC~HifH~~CL~~WMd~ykl~CPvCR~pLPp 635 (636)
T KOG0828|consen 569 RRTNDCVICMTPIDLRSTGSDCMVASMMVRRNYMLTPCHHIFHRQCLLQWMDTYKLICPVCRCPLPP 635 (636)
T ss_pred hccccceEeccccceeeccCcchhhhhhhhccccccchHHHHHHHHHHHHHhhhcccCCccCCCCCC
Confidence 35678999998742 124569999999999999998 55699999998864
No 47
>KOG4692 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=97.43 E-value=7e-05 Score=70.18 Aligned_cols=49 Identities=20% Similarity=0.642 Sum_probs=45.2
Q ss_pred CCCCccccccCCCCCCCeEcCCCCccChhHHHHHHhcCCCCCCCCCCCC
Q 018471 295 APGVSKCTLCLSNRQDPTATPCGHVFCWNCIMEWCNEKPECPLCRAPIT 343 (355)
Q Consensus 295 ~~~~~~C~iC~~~~~~p~~~~CgH~fC~~Ci~~~~~~~~~CP~Cr~~~~ 343 (355)
..++..|+||.....+.+..||+|.-|+.||.+.+.+.+.|-.|+..+.
T Consensus 419 ~sEd~lCpICyA~pi~Avf~PC~H~SC~~CI~qHlmN~k~CFfCktTv~ 467 (489)
T KOG4692|consen 419 DSEDNLCPICYAGPINAVFAPCSHRSCYGCITQHLMNCKRCFFCKTTVI 467 (489)
T ss_pred CcccccCcceecccchhhccCCCCchHHHHHHHHHhcCCeeeEecceee
Confidence 3578999999999999999999999999999999999999999988776
No 48
>KOG0297 consensus TNF receptor-associated factor [Signal transduction mechanisms]
Probab=97.42 E-value=7e-05 Score=73.59 Aligned_cols=54 Identities=33% Similarity=0.812 Sum_probs=48.2
Q ss_pred CCCccccccCCCCCCCeEc-CCCCccChhHHHHHHhcCCCCCCCCCCCCCCCcee
Q 018471 296 PGVSKCTLCLSNRQDPTAT-PCGHVFCWNCIMEWCNEKPECPLCRAPITHSSLVC 349 (355)
Q Consensus 296 ~~~~~C~iC~~~~~~p~~~-~CgH~fC~~Ci~~~~~~~~~CP~Cr~~~~~~~~~~ 349 (355)
..+..|++|.....+|+.+ .|||.||..|+..|...+..||.|+......+.++
T Consensus 19 ~~~l~C~~C~~vl~~p~~~~~cgh~fC~~C~~~~~~~~~~cp~~~~~~~~~~~~~ 73 (391)
T KOG0297|consen 19 DENLLCPICMSVLRDPVQTTTCGHRFCAGCLLESLSNHQKCPVCRQELTQAEELP 73 (391)
T ss_pred cccccCccccccccCCCCCCCCCCcccccccchhhccCcCCcccccccchhhccC
Confidence 4678999999999999995 99999999999999999999999988887766554
No 49
>PF04641 Rtf2: Rtf2 RING-finger
Probab=97.40 E-value=0.00018 Score=66.96 Aligned_cols=57 Identities=25% Similarity=0.505 Sum_probs=47.0
Q ss_pred CCCCccccccCCCCCCC----eEcCCCCccChhHHHHHHhcCCCCCCCCCCCCCCCceeccC
Q 018471 295 APGVSKCTLCLSNRQDP----TATPCGHVFCWNCIMEWCNEKPECPLCRAPITHSSLVCLYH 352 (355)
Q Consensus 295 ~~~~~~C~iC~~~~~~p----~~~~CgH~fC~~Ci~~~~~~~~~CP~Cr~~~~~~~~~~l~~ 352 (355)
....+.|||+...+... ...+|||||++.++...- ....||.|..++...+|++|--
T Consensus 110 ~~~~~~CPvt~~~~~~~~~fv~l~~cG~V~s~~alke~k-~~~~Cp~c~~~f~~~DiI~Lnp 170 (260)
T PF04641_consen 110 SEGRFICPVTGKEFNGKHKFVYLRPCGCVFSEKALKELK-KSKKCPVCGKPFTEEDIIPLNP 170 (260)
T ss_pred CCceeECCCCCcccCCceeEEEEcCCCCEeeHHHHHhhc-ccccccccCCccccCCEEEecC
Confidence 45689999999988532 234999999999999873 4568999999999999999863
No 50
>KOG1813 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=97.39 E-value=5.4e-05 Score=69.55 Aligned_cols=47 Identities=28% Similarity=0.600 Sum_probs=42.7
Q ss_pred CCccccccCCCCCCCeEcCCCCccChhHHHHHHhcCCCCCCCCCCCC
Q 018471 297 GVSKCTLCLSNRQDPTATPCGHVFCWNCIMEWCNEKPECPLCRAPIT 343 (355)
Q Consensus 297 ~~~~C~iC~~~~~~p~~~~CgH~fC~~Ci~~~~~~~~~CP~Cr~~~~ 343 (355)
-.+.|-||...+.+|+++.|||.||..|.....+....|++|.+...
T Consensus 240 ~Pf~c~icr~~f~~pVvt~c~h~fc~~ca~~~~qk~~~c~vC~~~t~ 286 (313)
T KOG1813|consen 240 LPFKCFICRKYFYRPVVTKCGHYFCEVCALKPYQKGEKCYVCSQQTH 286 (313)
T ss_pred CCccccccccccccchhhcCCceeehhhhccccccCCcceecccccc
Confidence 46789999999999999999999999999888888899999987655
No 51
>KOG4275 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=97.34 E-value=1.7e-05 Score=72.55 Aligned_cols=49 Identities=33% Similarity=0.783 Sum_probs=41.3
Q ss_pred CccccccCCCCCCCeEcCCCC-ccChhHHHHHHhcCCCCCCCCCCCCCCCceeccC
Q 018471 298 VSKCTLCLSNRQDPTATPCGH-VFCWNCIMEWCNEKPECPLCRAPITHSSLVCLYH 352 (355)
Q Consensus 298 ~~~C~iC~~~~~~p~~~~CgH-~fC~~Ci~~~~~~~~~CP~Cr~~~~~~~~~~l~~ 352 (355)
...|.||++.+.+-+.++||| +-|..|-+.. ..||+||+.+. +++++|+
T Consensus 300 ~~LC~ICmDaP~DCvfLeCGHmVtCt~CGkrm----~eCPICRqyi~--rvvrif~ 349 (350)
T KOG4275|consen 300 RRLCAICMDAPRDCVFLECGHMVTCTKCGKRM----NECPICRQYIV--RVVRIFR 349 (350)
T ss_pred HHHHHHHhcCCcceEEeecCcEEeehhhcccc----ccCchHHHHHH--HHHhhhc
Confidence 789999999999999999999 5899997643 49999998765 6666664
No 52
>PF11789 zf-Nse: Zinc-finger of the MIZ type in Nse subunit; PDB: 2YU4_A 3HTK_C.
Probab=97.16 E-value=0.00018 Score=50.64 Aligned_cols=42 Identities=29% Similarity=0.654 Sum_probs=29.9
Q ss_pred CCCccccccCCCCCCCeEc-CCCCccChhHHHHHHh--cCCCCCC
Q 018471 296 PGVSKCTLCLSNRQDPTAT-PCGHVFCWNCIMEWCN--EKPECPL 337 (355)
Q Consensus 296 ~~~~~C~iC~~~~~~p~~~-~CgH~fC~~Ci~~~~~--~~~~CP~ 337 (355)
.....|||....+++|+.. .|||+|....|..+++ ....||.
T Consensus 9 ~~~~~CPiT~~~~~~PV~s~~C~H~fek~aI~~~i~~~~~~~CPv 53 (57)
T PF11789_consen 9 TISLKCPITLQPFEDPVKSKKCGHTFEKEAILQYIQRNGSKRCPV 53 (57)
T ss_dssp B--SB-TTTSSB-SSEEEESSS--EEEHHHHHHHCTTTS-EE-SC
T ss_pred EeccCCCCcCChhhCCcCcCCCCCeecHHHHHHHHHhcCCCCCCC
Confidence 3468999999999999875 8999999999999994 3458998
No 53
>KOG1002 consensus Nucleotide excision repair protein RAD16 [Replication, recombination and repair]
Probab=97.11 E-value=0.00025 Score=69.84 Aligned_cols=51 Identities=29% Similarity=0.755 Sum_probs=43.5
Q ss_pred CCCCccccccCCCCCCCeEcCCCCccChhHHHHHHh-----cCCCCCCCCCCCCCC
Q 018471 295 APGVSKCTLCLSNRQDPTATPCGHVFCWNCIMEWCN-----EKPECPLCRAPITHS 345 (355)
Q Consensus 295 ~~~~~~C~iC~~~~~~p~~~~CgH~fC~~Ci~~~~~-----~~~~CP~Cr~~~~~~ 345 (355)
..+...|.+|.++..+++.+.|.|.||..|+.+++. .+.+||.|-..+...
T Consensus 533 nk~~~~C~lc~d~aed~i~s~ChH~FCrlCi~eyv~~f~~~~nvtCP~C~i~LsiD 588 (791)
T KOG1002|consen 533 NKGEVECGLCHDPAEDYIESSCHHKFCRLCIKEYVESFMENNNVTCPVCHIGLSID 588 (791)
T ss_pred ccCceeecccCChhhhhHhhhhhHHHHHHHHHHHHHhhhcccCCCCcccccccccc
Confidence 346789999999999999999999999999999875 346999998776643
No 54
>KOG1645 consensus RING-finger-containing E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=97.03 E-value=0.00022 Score=68.19 Aligned_cols=54 Identities=31% Similarity=0.782 Sum_probs=45.0
Q ss_pred CccccccCCCCCCC-----eEcCCCCccChhHHHHHHhc--CCCCCCCCCCCCCCCceecc
Q 018471 298 VSKCTLCLSNRQDP-----TATPCGHVFCWNCIMEWCNE--KPECPLCRAPITHSSLVCLY 351 (355)
Q Consensus 298 ~~~C~iC~~~~~~p-----~~~~CgH~fC~~Ci~~~~~~--~~~CP~Cr~~~~~~~~~~l~ 351 (355)
...|+||++....+ +.+.|||.|..+||..|+.. ...||.|.......++.++|
T Consensus 4 g~tcpiclds~~~~g~hr~vsl~cghlFgs~cie~wl~k~~~~~cp~c~~katkr~i~~e~ 64 (463)
T KOG1645|consen 4 GTTCPICLDSYTTAGNHRIVSLQCGHLFGSQCIEKWLGKKTKMQCPLCSGKATKRQIRPEY 64 (463)
T ss_pred cccCceeeeeeeecCceEEeeecccccccHHHHHHHHhhhhhhhCcccCChhHHHHHHHHH
Confidence 46899999987755 34579999999999999952 36899999988888888876
No 55
>KOG1571 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=97.02 E-value=0.00025 Score=67.13 Aligned_cols=53 Identities=34% Similarity=0.837 Sum_probs=39.9
Q ss_pred CCCCCccccccCCCCCCCeEcCCCCccChhHHHHHHhcCCCCCCCCCCCCCCCceecc
Q 018471 294 AAPGVSKCTLCLSNRQDPTATPCGHVFCWNCIMEWCNEKPECPLCRAPITHSSLVCLY 351 (355)
Q Consensus 294 ~~~~~~~C~iC~~~~~~p~~~~CgH~fC~~Ci~~~~~~~~~CP~Cr~~~~~~~~~~l~ 351 (355)
+.+....|.||.+...+.+.+||||+.| |..-. +..+.||+||+.+. .++++|
T Consensus 301 ~~~~p~lcVVcl~e~~~~~fvpcGh~cc--ct~cs-~~l~~CPvCR~rI~--~~~k~y 353 (355)
T KOG1571|consen 301 ELPQPDLCVVCLDEPKSAVFVPCGHVCC--CTLCS-KHLPQCPVCRQRIR--LVRKRY 353 (355)
T ss_pred ccCCCCceEEecCCccceeeecCCcEEE--chHHH-hhCCCCchhHHHHH--HHHHHh
Confidence 4456789999999999999999999977 65432 23467999999775 444444
No 56
>KOG2660 consensus Locus-specific chromosome binding proteins [Function unknown]
Probab=96.88 E-value=0.0003 Score=65.81 Aligned_cols=49 Identities=33% Similarity=0.680 Sum_probs=42.8
Q ss_pred CCCccccccCCCCCCCeEc-CCCCccChhHHHHHHhcCCCCCCCCCCCCC
Q 018471 296 PGVSKCTLCLSNRQDPTAT-PCGHVFCWNCIMEWCNEKPECPLCRAPITH 344 (355)
Q Consensus 296 ~~~~~C~iC~~~~~~p~~~-~CgH~fC~~Ci~~~~~~~~~CP~Cr~~~~~ 344 (355)
.....|.+|...+.+++.+ -|=|.||..||..++.....||.|...+..
T Consensus 13 n~~itC~LC~GYliDATTI~eCLHTFCkSCivk~l~~~~~CP~C~i~ih~ 62 (331)
T KOG2660|consen 13 NPHITCRLCGGYLIDATTITECLHTFCKSCIVKYLEESKYCPTCDIVIHK 62 (331)
T ss_pred ccceehhhccceeecchhHHHHHHHHHHHHHHHHHHHhccCCccceeccC
Confidence 4567999999999988654 699999999999999999999999887764
No 57
>KOG1039 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=96.86 E-value=0.00059 Score=65.32 Aligned_cols=48 Identities=31% Similarity=0.962 Sum_probs=38.5
Q ss_pred CCCccccccCCCCCCCe-----E---cCCCCccChhHHHHHHh--c-----CCCCCCCCCCCC
Q 018471 296 PGVSKCTLCLSNRQDPT-----A---TPCGHVFCWNCIMEWCN--E-----KPECPLCRAPIT 343 (355)
Q Consensus 296 ~~~~~C~iC~~~~~~p~-----~---~~CgH~fC~~Ci~~~~~--~-----~~~CP~Cr~~~~ 343 (355)
..+..|.||++...... . .+|.|.||..||..|-. . .+.||.||....
T Consensus 159 s~~k~CGICme~i~ek~~~~~rfgilpnC~H~~Cl~Cir~wr~~~q~~~~~sksCP~CRv~s~ 221 (344)
T KOG1039|consen 159 SSEKECGICMETINEKAASERRFGILPNCNHSFCLNCIRKWRQATQFESKTSKSCPFCRVPSS 221 (344)
T ss_pred cccccceehhhhccccchhhhhcccCCCcchhhhhcHhHhhhhhhccccccccCCCcccCccc
Confidence 46789999999876554 2 57999999999999973 3 478999987543
No 58
>COG5194 APC11 Component of SCF ubiquitin ligase and anaphase-promoting complex [Posttranslational modification, protein turnover, chaperones / Cell division and chromosome partitioning]
Probab=96.85 E-value=0.00073 Score=49.94 Aligned_cols=30 Identities=37% Similarity=0.765 Sum_probs=27.5
Q ss_pred CCCCccChhHHHHHHhcCCCCCCCCCCCCC
Q 018471 315 PCGHVFCWNCIMEWCNEKPECPLCRAPITH 344 (355)
Q Consensus 315 ~CgH~fC~~Ci~~~~~~~~~CP~Cr~~~~~ 344 (355)
-|.|.|+..||.+|+..+..||+++++...
T Consensus 53 ~CnHaFH~HCI~rWL~Tk~~CPld~q~w~~ 82 (88)
T COG5194 53 VCNHAFHDHCIYRWLDTKGVCPLDRQTWVL 82 (88)
T ss_pred ecchHHHHHHHHHHHhhCCCCCCCCceeEE
Confidence 499999999999999999999999998753
No 59
>PF11793 FANCL_C: FANCL C-terminal domain; PDB: 3K1L_A.
Probab=96.76 E-value=0.00026 Score=52.15 Aligned_cols=47 Identities=38% Similarity=0.929 Sum_probs=23.1
Q ss_pred CccccccCCCCC-C---Ce--E--cCCCCccChhHHHHHHhc---C--------CCCCCCCCCCCC
Q 018471 298 VSKCTLCLSNRQ-D---PT--A--TPCGHVFCWNCIMEWCNE---K--------PECPLCRAPITH 344 (355)
Q Consensus 298 ~~~C~iC~~~~~-~---p~--~--~~CgH~fC~~Ci~~~~~~---~--------~~CP~Cr~~~~~ 344 (355)
+..|.||.+... + |. . ..|+..|+..|+.+|+.. . ..||.|+.++.-
T Consensus 2 ~~~C~IC~~~~~~~~~~p~~~C~n~~C~~~fH~~CL~~wf~~~~~~~~~~~~~~G~CP~C~~~i~~ 67 (70)
T PF11793_consen 2 ELECGICYSYRLDDGEIPDVVCPNPSCGKKFHLLCLSEWFLSLEKSRQSFIPIFGECPYCSSPISW 67 (70)
T ss_dssp --S-SSS--SS-TT-----B--S-TT----B-SGGGHHHHHHHHSSS-TTT--EEE-TTT-SEEEG
T ss_pred CCCCCcCCcEecCCCCcCceEcCCcccCCHHHHHHHHHHHHHcccCCeeecccccCCcCCCCeeeE
Confidence 468999998754 2 22 2 269999999999999862 1 169999987753
No 60
>COG5219 Uncharacterized conserved protein, contains RING Zn-finger [General function prediction only]
Probab=96.74 E-value=0.00042 Score=72.41 Aligned_cols=48 Identities=31% Similarity=0.858 Sum_probs=38.8
Q ss_pred CCCccccccCCCCC-------CCeEcCCCCccChhHHHHHHh--cCCCCCCCCCCCC
Q 018471 296 PGVSKCTLCLSNRQ-------DPTATPCGHVFCWNCIMEWCN--EKPECPLCRAPIT 343 (355)
Q Consensus 296 ~~~~~C~iC~~~~~-------~p~~~~CgH~fC~~Ci~~~~~--~~~~CP~Cr~~~~ 343 (355)
++..+|+||...+. +..+..|.|-|+-.|+..|.+ .+..||+||.+++
T Consensus 1467 sG~eECaICYsvL~~vdr~lPskrC~TCknKFH~~CLyKWf~Ss~~s~CPlCRseit 1523 (1525)
T COG5219 1467 SGHEECAICYSVLDMVDRSLPSKRCATCKNKFHTRCLYKWFASSARSNCPLCRSEIT 1523 (1525)
T ss_pred CCcchhhHHHHHHHHHhccCCccccchhhhhhhHHHHHHHHHhcCCCCCCccccccc
Confidence 46789999986432 345778999999999999997 4479999998765
No 61
>KOG0825 consensus PHD Zn-finger protein [General function prediction only]
Probab=96.57 E-value=0.00035 Score=71.65 Aligned_cols=51 Identities=24% Similarity=0.580 Sum_probs=40.6
Q ss_pred CCCccccccCCCCCCC---eEcCCCCccChhHHHHHHhcCCCCCCCCCCCCCCC
Q 018471 296 PGVSKCTLCLSNRQDP---TATPCGHVFCWNCIMEWCNEKPECPLCRAPITHSS 346 (355)
Q Consensus 296 ~~~~~C~iC~~~~~~p---~~~~CgH~fC~~Ci~~~~~~~~~CP~Cr~~~~~~~ 346 (355)
.....|++|+....+. ...+|+|.||..|+..|.+...+||+||..+..-.
T Consensus 121 ~~~~~CP~Ci~s~~DqL~~~~k~c~H~FC~~Ci~sWsR~aqTCPiDR~EF~~v~ 174 (1134)
T KOG0825|consen 121 HVENQCPNCLKSCNDQLEESEKHTAHYFCEECVGSWSRCAQTCPVDRGEFGEVK 174 (1134)
T ss_pred hhhhhhhHHHHHHHHHhhccccccccccHHHHhhhhhhhcccCchhhhhhheee
Confidence 4567888887755432 34589999999999999999999999999886433
No 62
>PF14447 Prok-RING_4: Prokaryotic RING finger family 4
Probab=96.56 E-value=0.0014 Score=45.28 Aligned_cols=48 Identities=29% Similarity=0.686 Sum_probs=38.7
Q ss_pred CCccccccCCCCCCCeEcCCCCccChhHHHHHHhcCCCCCCCCCCCCCCC
Q 018471 297 GVSKCTLCLSNRQDPTATPCGHVFCWNCIMEWCNEKPECPLCRAPITHSS 346 (355)
Q Consensus 297 ~~~~C~iC~~~~~~p~~~~CgH~fC~~Ci~~~~~~~~~CP~Cr~~~~~~~ 346 (355)
....|..|...-...+.+||||+.|..|...+ .-..||.|..++...+
T Consensus 6 ~~~~~~~~~~~~~~~~~~pCgH~I~~~~f~~~--rYngCPfC~~~~~~~~ 53 (55)
T PF14447_consen 6 PEQPCVFCGFVGTKGTVLPCGHLICDNCFPGE--RYNGCPFCGTPFEFDD 53 (55)
T ss_pred cceeEEEccccccccccccccceeeccccChh--hccCCCCCCCcccCCC
Confidence 34678888888788899999999999997642 3468999999988655
No 63
>smart00744 RINGv The RING-variant domain is a C4HC3 zinc-finger like motif found in a number of cellular and viral proteins. Some of these proteins have been shown both in vivo and in vitro to have ubiquitin E3 ligase activity. The RING-variant domain is reminiscent of both the RING and the PHD domains and may represent an evolutionary intermediate. To describe this domain the term PHD/LAP domain has been used in the past. Extended description: The RING-variant (RINGv) domain contains a C4HC3 zinc-finger-like motif similar to the PHD domain, while some of the spacing between the Cys/His residues follow a pattern somewhat closer to that found in the RING domain. The RINGv domain, similar to the RING, PHD and LIM domains, is thought to bind two zinc ions co-ordinated by the highly conserved Cys and His residues. RING variant domain: C-x (2) -C-x(10-45)-C-x (1) -C-x (7) -H-x(2)-C-x(11-25)-C-x(2)-C As opposed to a PHD: C-x(1-2) -C-x (7-13)-C-x(2-4)-C-x(4-5)-H-x(2)-C-x(10-21)-C-x(2)-C Class
Probab=96.47 E-value=0.0026 Score=43.39 Aligned_cols=40 Identities=30% Similarity=0.934 Sum_probs=31.6
Q ss_pred cccccCC--CCCCCeEcCCC-----CccChhHHHHHHhc--CCCCCCCC
Q 018471 300 KCTLCLS--NRQDPTATPCG-----HVFCWNCIMEWCNE--KPECPLCR 339 (355)
Q Consensus 300 ~C~iC~~--~~~~p~~~~Cg-----H~fC~~Ci~~~~~~--~~~CP~Cr 339 (355)
.|-||++ ...++...||. |.++..|+..|+.. +..||+|+
T Consensus 1 ~CrIC~~~~~~~~~l~~PC~C~G~~~~vH~~Cl~~W~~~~~~~~C~iC~ 49 (49)
T smart00744 1 ICRICHDEGDEGDPLVSPCRCKGSLKYVHQECLERWINESGNKTCEICK 49 (49)
T ss_pred CccCCCCCCCCCCeeEeccccCCchhHHHHHHHHHHHHHcCCCcCCCCC
Confidence 3889987 44567788985 77999999999964 45899995
No 64
>KOG0804 consensus Cytoplasmic Zn-finger protein BRAP2 (BRCA1 associated protein) [General function prediction only]
Probab=96.43 E-value=0.0018 Score=62.87 Aligned_cols=47 Identities=30% Similarity=0.837 Sum_probs=37.6
Q ss_pred CCCCccccccCCCCCCCe----EcCCCCccChhHHHHHHhcCCCCCCCCCCCC
Q 018471 295 APGVSKCTLCLSNRQDPT----ATPCGHVFCWNCIMEWCNEKPECPLCRAPIT 343 (355)
Q Consensus 295 ~~~~~~C~iC~~~~~~p~----~~~CgH~fC~~Ci~~~~~~~~~CP~Cr~~~~ 343 (355)
..+-..||+|++.+...+ .+.|.|.|+-.|+..|- ...||+||..-.
T Consensus 172 ~tELPTCpVCLERMD~s~~gi~t~~c~Hsfh~~cl~~w~--~~scpvcR~~q~ 222 (493)
T KOG0804|consen 172 LTELPTCPVCLERMDSSTTGILTILCNHSFHCSCLMKWW--DSSCPVCRYCQS 222 (493)
T ss_pred cccCCCcchhHhhcCccccceeeeecccccchHHHhhcc--cCcChhhhhhcC
Confidence 346779999999886543 45899999999999984 578999987555
No 65
>KOG4739 consensus Uncharacterized protein involved in synaptonemal complex formation [Cell cycle control, cell division, chromosome partitioning; General function prediction only]
Probab=96.14 E-value=0.0014 Score=58.95 Aligned_cols=54 Identities=33% Similarity=0.682 Sum_probs=37.4
Q ss_pred ccccccCCCCC-CC-eEcCCCCccChhHHHHHHhcCCCCCCCCCCCCCCCceeccCCC
Q 018471 299 SKCTLCLSNRQ-DP-TATPCGHVFCWNCIMEWCNEKPECPLCRAPITHSSLVCLYHSD 354 (355)
Q Consensus 299 ~~C~iC~~~~~-~p-~~~~CgH~fC~~Ci~~~~~~~~~CP~Cr~~~~~~~~~~l~~~~ 354 (355)
.-|..|..-.. +| ..+.|+|+||..|...- ....||+|++++...++.+-+..|
T Consensus 4 VhCn~C~~~~~~~~f~LTaC~HvfC~~C~k~~--~~~~C~lCkk~ir~i~l~~slp~~ 59 (233)
T KOG4739|consen 4 VHCNKCFRFPSQDPFFLTACRHVFCEPCLKAS--SPDVCPLCKKSIRIIQLNRSLPTD 59 (233)
T ss_pred EEeccccccCCCCceeeeechhhhhhhhcccC--Cccccccccceeeeeecccccchh
Confidence 35666765433 33 46789999999997632 223999999998877776665543
No 66
>KOG0827 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=96.05 E-value=0.0032 Score=60.07 Aligned_cols=50 Identities=24% Similarity=0.890 Sum_probs=34.8
Q ss_pred CccccccCCCCCCC---eEc-CCCCccChhHHHHHHhcC---CCCCCCCCCCCCCCc
Q 018471 298 VSKCTLCLSNRQDP---TAT-PCGHVFCWNCIMEWCNEK---PECPLCRAPITHSSL 347 (355)
Q Consensus 298 ~~~C~iC~~~~~~p---~~~-~CgH~fC~~Ci~~~~~~~---~~CP~Cr~~~~~~~~ 347 (355)
...|.||.+-+.+. ..+ .|||+|+-.|+..|.... ..||.|+-.+....+
T Consensus 4 ~A~C~Ic~d~~p~~~~l~~i~~cGhifh~~cl~qwfe~~Ps~R~cpic~ik~~~r~~ 60 (465)
T KOG0827|consen 4 MAECHICIDGRPNDHELGPIGTCGHIFHTTCLTQWFEGDPSNRGCPICQIKLQERHV 60 (465)
T ss_pred cceeeEeccCCccccccccccchhhHHHHHHHHHHHccCCccCCCCceeecccceee
Confidence 45899995533322 123 499999999999999743 489999855554433
No 67
>KOG2930 consensus SCF ubiquitin ligase, Rbx1 component [Posttranslational modification, protein turnover, chaperones]
Probab=95.99 E-value=0.0036 Score=48.67 Aligned_cols=28 Identities=32% Similarity=0.857 Sum_probs=25.6
Q ss_pred CCCCccChhHHHHHHhcCCCCCCCCCCC
Q 018471 315 PCGHVFCWNCIMEWCNEKPECPLCRAPI 342 (355)
Q Consensus 315 ~CgH~fC~~Ci~~~~~~~~~CP~Cr~~~ 342 (355)
-|.|.|+..||.+|++.+..||+|.++-
T Consensus 80 ~CNHaFH~hCisrWlktr~vCPLdn~eW 107 (114)
T KOG2930|consen 80 VCNHAFHFHCISRWLKTRNVCPLDNKEW 107 (114)
T ss_pred ecchHHHHHHHHHHHhhcCcCCCcCcce
Confidence 5999999999999999999999997653
No 68
>COG5236 Uncharacterized conserved protein, contains RING Zn-finger [General function prediction only]
Probab=95.47 E-value=0.016 Score=54.54 Aligned_cols=49 Identities=27% Similarity=0.716 Sum_probs=40.5
Q ss_pred CCCCCccccccCCCCCCCeEcCCCCccChhHHHHH--HhcCCCCCCCCCCC
Q 018471 294 AAPGVSKCTLCLSNRQDPTATPCGHVFCWNCIMEW--CNEKPECPLCRAPI 342 (355)
Q Consensus 294 ~~~~~~~C~iC~~~~~~p~~~~CgH~fC~~Ci~~~--~~~~~~CP~Cr~~~ 342 (355)
..++.-.|.||.+..+-...+||+|..|--|..+. +.....||+||..-
T Consensus 57 tDEen~~C~ICA~~~TYs~~~PC~H~~CH~Ca~RlRALY~~K~C~~CrTE~ 107 (493)
T COG5236 57 TDEENMNCQICAGSTTYSARYPCGHQICHACAVRLRALYMQKGCPLCRTET 107 (493)
T ss_pred cccccceeEEecCCceEEEeccCCchHHHHHHHHHHHHHhccCCCcccccc
Confidence 44567899999998888888999999999998653 45778999998754
No 69
>KOG2932 consensus E3 ubiquitin ligase involved in ubiquitination of E-cadherin complex [Posttranslational modification, protein turnover, chaperones]
Probab=95.43 E-value=0.0098 Score=55.23 Aligned_cols=44 Identities=32% Similarity=0.716 Sum_probs=32.2
Q ss_pred CccccccCCCCCC-CeEcCCCCccChhHHHHHHhcCCCCCCCCCCCC
Q 018471 298 VSKCTLCLSNRQD-PTATPCGHVFCWNCIMEWCNEKPECPLCRAPIT 343 (355)
Q Consensus 298 ~~~C~iC~~~~~~-p~~~~CgH~fC~~Ci~~~~~~~~~CP~Cr~~~~ 343 (355)
-..|.-|--.+.. ...+||.|+||++|.. ....+.||.|...+.
T Consensus 90 VHfCd~Cd~PI~IYGRmIPCkHvFCl~CAr--~~~dK~Cp~C~d~Vq 134 (389)
T KOG2932|consen 90 VHFCDRCDFPIAIYGRMIPCKHVFCLECAR--SDSDKICPLCDDRVQ 134 (389)
T ss_pred eEeecccCCcceeeecccccchhhhhhhhh--cCccccCcCcccHHH
Confidence 4567778665543 4567999999999975 345679999977654
No 70
>KOG1001 consensus Helicase-like transcription factor HLTF/DNA helicase RAD5, DEAD-box superfamily [Transcription; Replication, recombination and repair]
Probab=95.37 E-value=0.0035 Score=65.49 Aligned_cols=48 Identities=33% Similarity=0.778 Sum_probs=40.0
Q ss_pred ccccccCCCCCCCeEcCCCCccChhHHHHHHh--cCCCCCCCCCCCCCCCc
Q 018471 299 SKCTLCLSNRQDPTATPCGHVFCWNCIMEWCN--EKPECPLCRAPITHSSL 347 (355)
Q Consensus 299 ~~C~iC~~~~~~p~~~~CgH~fC~~Ci~~~~~--~~~~CP~Cr~~~~~~~~ 347 (355)
..|.+|.+ ...++.++|||.||..|+..... +...||.|+..+...++
T Consensus 455 ~~c~ic~~-~~~~~it~c~h~~c~~c~~~~i~~~~~~~~~~cr~~l~~~~l 504 (674)
T KOG1001|consen 455 HWCHICCD-LDSFFITRCGHDFCVECLKKSIQQSENAPCPLCRNVLKEKKL 504 (674)
T ss_pred cccccccc-cccceeecccchHHHHHHHhccccccCCCCcHHHHHHHHHHH
Confidence 89999999 77889999999999999988775 23479999987765544
No 71
>KOG1493 consensus Anaphase-promoting complex (APC), subunit 11 [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones]
Probab=95.31 E-value=0.0058 Score=44.85 Aligned_cols=30 Identities=37% Similarity=0.969 Sum_probs=25.4
Q ss_pred CCCCccChhHHHHHHh---cCCCCCCCCCCCCC
Q 018471 315 PCGHVFCWNCIMEWCN---EKPECPLCRAPITH 344 (355)
Q Consensus 315 ~CgH~fC~~Ci~~~~~---~~~~CP~Cr~~~~~ 344 (355)
-|.|.|...||.+|+. +...||+||+....
T Consensus 50 ~C~h~fh~hCI~~wl~~~tsq~~CPmcRq~~~~ 82 (84)
T KOG1493|consen 50 YCLHAFHAHCILKWLNTPTSQGQCPMCRQTWQF 82 (84)
T ss_pred HHHHHHHHHHHHHHhcCccccccCCcchheeEe
Confidence 4999999999999986 33589999998754
No 72
>PF14570 zf-RING_4: RING/Ubox like zinc-binding domain; PDB: 1E4U_A 1UR6_B.
Probab=94.81 E-value=0.019 Score=38.73 Aligned_cols=42 Identities=31% Similarity=0.742 Sum_probs=20.8
Q ss_pred ccccCCCCCC--CeEc--CCCCccChhHHHHHHh-cCCCCCCCCCCC
Q 018471 301 CTLCLSNRQD--PTAT--PCGHVFCWNCIMEWCN-EKPECPLCRAPI 342 (355)
Q Consensus 301 C~iC~~~~~~--p~~~--~CgH~fC~~Ci~~~~~-~~~~CP~Cr~~~ 342 (355)
|++|.+.+.. .... +||+..|..|...... ....||-||++.
T Consensus 1 cp~C~e~~d~~d~~~~PC~Cgf~IC~~C~~~i~~~~~g~CPgCr~~Y 47 (48)
T PF14570_consen 1 CPLCDEELDETDKDFYPCECGFQICRFCYHDILENEGGRCPGCREPY 47 (48)
T ss_dssp -TTTS-B--CCCTT--SSTTS----HHHHHHHTTSS-SB-TTT--B-
T ss_pred CCCcccccccCCCccccCcCCCcHHHHHHHHHHhccCCCCCCCCCCC
Confidence 7888887632 2233 5899999999988875 568999999864
No 73
>KOG3970 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=94.70 E-value=0.022 Score=50.58 Aligned_cols=46 Identities=33% Similarity=0.748 Sum_probs=36.1
Q ss_pred CccccccCCCCC--CCeEcCCCCccChhHHHHHHhc--------CCCCCCCCCCCC
Q 018471 298 VSKCTLCLSNRQ--DPTATPCGHVFCWNCIMEWCNE--------KPECPLCRAPIT 343 (355)
Q Consensus 298 ~~~C~iC~~~~~--~p~~~~CgH~fC~~Ci~~~~~~--------~~~CP~Cr~~~~ 343 (355)
...|.+|...+. +.+.+-|-|+|+|.|+.+|... ...||.|..++-
T Consensus 50 ~pNC~LC~t~La~gdt~RLvCyhlfHW~ClneraA~lPanTAPaGyqCP~Cs~eiF 105 (299)
T KOG3970|consen 50 NPNCRLCNTPLASGDTTRLVCYHLFHWKCLNERAANLPANTAPAGYQCPCCSQEIF 105 (299)
T ss_pred CCCCceeCCccccCcceeehhhhhHHHHHhhHHHhhCCCcCCCCcccCCCCCCccC
Confidence 347888888765 4577889999999999999752 248999977653
No 74
>COG5175 MOT2 Transcriptional repressor [Transcription]
Probab=94.24 E-value=0.029 Score=52.73 Aligned_cols=50 Identities=24% Similarity=0.569 Sum_probs=33.8
Q ss_pred ccccccCCCCCC--C--eEcCCCCccChhHHHHHHh-cCCCCCCCCCCCCCCCce
Q 018471 299 SKCTLCLSNRQD--P--TATPCGHVFCWNCIMEWCN-EKPECPLCRAPITHSSLV 348 (355)
Q Consensus 299 ~~C~iC~~~~~~--p--~~~~CgH~fC~~Ci~~~~~-~~~~CP~Cr~~~~~~~~~ 348 (355)
.-|++|++++.. . .--+||...|..|....-+ -+..||.||....++.++
T Consensus 15 d~cplcie~mditdknf~pc~cgy~ic~fc~~~irq~lngrcpacrr~y~denv~ 69 (480)
T COG5175 15 DYCPLCIEPMDITDKNFFPCPCGYQICQFCYNNIRQNLNGRCPACRRKYDDENVR 69 (480)
T ss_pred ccCcccccccccccCCcccCCcccHHHHHHHHHHHhhccCCChHhhhhcccccee
Confidence 349999998752 2 2237888767766544332 236899999988877664
No 75
>KOG2817 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=93.87 E-value=0.045 Score=52.76 Aligned_cols=56 Identities=23% Similarity=0.423 Sum_probs=43.9
Q ss_pred CCCccccccCCCCC---CCeEcCCCCccChhHHHHHHhcC---CCCCCCCCCCCCCCceecc
Q 018471 296 PGVSKCTLCLSNRQ---DPTATPCGHVFCWNCIMEWCNEK---PECPLCRAPITHSSLVCLY 351 (355)
Q Consensus 296 ~~~~~C~iC~~~~~---~p~~~~CgH~fC~~Ci~~~~~~~---~~CP~Cr~~~~~~~~~~l~ 351 (355)
..-+.|||=.+.-. .|+.+.||||.|.+-+....++. ++||.|-.....++..+||
T Consensus 332 HSvF~CPVlKeqtsdeNPPm~L~CGHVISkdAlnrLS~ng~~sfKCPYCP~e~~~~~~kql~ 393 (394)
T KOG2817|consen 332 HSVFICPVLKEQTSDENPPMMLICGHVISKDALNRLSKNGSQSFKCPYCPVEQLASDTKQLY 393 (394)
T ss_pred cceeecccchhhccCCCCCeeeeccceecHHHHHHHhhCCCeeeeCCCCCcccCHHhccccc
Confidence 35689998655332 47899999999999999887643 6999998877777777776
No 76
>PF10367 Vps39_2: Vacuolar sorting protein 39 domain 2; InterPro: IPR019453 This entry represents a domain found in the vacuolar sorting protein Vps39 and transforming growth factor beta receptor-associated protein Trap1. Vps39, a component of the C-Vps complex, is thought to be required for the fusion of endosomes and other types of transport intermediates with the vacuole [, ]. In Saccharomyces cerevisiae (Baker's yeast), Vps39 has been shown to stimulate nucleotide exchange []. Trap1 plays a role in the TGF-beta/activin signaling pathway. It associates with inactive heteromeric TGF-beta and activin receptor complexes, mainly through the type II receptor, and is released upon activation of signaling [, ]. The precise function of this domain has not been characterised In Vps39 this domain is involved in localisation and in mediating the interactions with Vps11 [].
Probab=93.66 E-value=0.028 Score=44.48 Aligned_cols=31 Identities=32% Similarity=0.800 Sum_probs=25.5
Q ss_pred CCCccccccCCCCCCCe--EcCCCCccChhHHH
Q 018471 296 PGVSKCTLCLSNRQDPT--ATPCGHVFCWNCIM 326 (355)
Q Consensus 296 ~~~~~C~iC~~~~~~p~--~~~CgH~fC~~Ci~ 326 (355)
++...|++|...+.+.. ..||||++++.|+.
T Consensus 76 ~~~~~C~vC~k~l~~~~f~~~p~~~v~H~~C~~ 108 (109)
T PF10367_consen 76 TESTKCSVCGKPLGNSVFVVFPCGHVVHYSCIK 108 (109)
T ss_pred CCCCCccCcCCcCCCceEEEeCCCeEEeccccc
Confidence 45678999999888764 45999999999974
No 77
>KOG1814 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=93.34 E-value=0.044 Score=53.00 Aligned_cols=34 Identities=26% Similarity=0.841 Sum_probs=27.8
Q ss_pred CCccccccCCCCCC---CeEcCCCCccChhHHHHHHh
Q 018471 297 GVSKCTLCLSNRQD---PTATPCGHVFCWNCIMEWCN 330 (355)
Q Consensus 297 ~~~~C~iC~~~~~~---p~~~~CgH~fC~~Ci~~~~~ 330 (355)
..+.|.||++...- -..+||+|+||..|+..+..
T Consensus 183 slf~C~ICf~e~~G~~c~~~lpC~Hv~Ck~C~kdY~~ 219 (445)
T KOG1814|consen 183 SLFDCCICFEEQMGQHCFKFLPCSHVFCKSCLKDYFT 219 (445)
T ss_pred hcccceeeehhhcCcceeeecccchHHHHHHHHHHHH
Confidence 46899999987543 25679999999999999864
No 78
>PF07800 DUF1644: Protein of unknown function (DUF1644); InterPro: IPR012866 This family consists of sequences found in a number of hypothetical plant proteins of unknown function. The region of interest contains nine highly conserved cysteine residues and is approximately 160 amino acids in length, which probably represent a zinc-binding domain.
Probab=93.09 E-value=0.1 Score=44.14 Aligned_cols=51 Identities=22% Similarity=0.580 Sum_probs=36.3
Q ss_pred CccccccCCCCCCCeEcC------------CCCc-cChhHHHHHHhc-------------------------------CC
Q 018471 298 VSKCTLCLSNRQDPTATP------------CGHV-FCWNCIMEWCNE-------------------------------KP 333 (355)
Q Consensus 298 ~~~C~iC~~~~~~p~~~~------------CgH~-fC~~Ci~~~~~~-------------------------------~~ 333 (355)
+..|+||++.+.|.+.+- |+.. -+..|+.++.+. +.
T Consensus 2 d~~CpICme~PHNAVLLlCSS~~kgcRpymc~Ts~rhSNCLdqfkka~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L 81 (162)
T PF07800_consen 2 DVTCPICMEHPHNAVLLLCSSHEKGCRPYMCDTSYRHSNCLDQFKKAYGKSSSSSSQSSSSAPSDSSSSESSESQEQPEL 81 (162)
T ss_pred CccCceeccCCCceEEEEeccccCCccccccCCccchhHHHHHHHHHhcCCCCccccccccCcCCCcccccccccccccc
Confidence 568999999999988764 3332 246788876530 23
Q ss_pred CCCCCCCCCCCCCce
Q 018471 334 ECPLCRAPITHSSLV 348 (355)
Q Consensus 334 ~CP~Cr~~~~~~~~~ 348 (355)
.||+||..|....++
T Consensus 82 ~CPLCRG~V~GWtvv 96 (162)
T PF07800_consen 82 ACPLCRGEVKGWTVV 96 (162)
T ss_pred cCccccCceeceEEc
Confidence 799999998866554
No 79
>KOG4367 consensus Predicted Zn-finger protein [Function unknown]
Probab=92.88 E-value=0.054 Score=52.60 Aligned_cols=35 Identities=29% Similarity=0.621 Sum_probs=31.4
Q ss_pred CCccccccCCCCCCCeEcCCCCccChhHHHHHHhc
Q 018471 297 GVSKCTLCLSNRQDPTATPCGHVFCWNCIMEWCNE 331 (355)
Q Consensus 297 ~~~~C~iC~~~~~~p~~~~CgH~fC~~Ci~~~~~~ 331 (355)
++.+|++|..-+.+|+++||||..|..|....+.+
T Consensus 3 eelkc~vc~~f~~epiil~c~h~lc~~ca~~~~~~ 37 (699)
T KOG4367|consen 3 EELKCPVCGSFYREPIILPCSHNLCQACARNILVQ 37 (699)
T ss_pred ccccCceehhhccCceEeecccHHHHHHHHhhccc
Confidence 57899999999999999999999999999876643
No 80
>KOG4185 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=92.73 E-value=0.074 Score=50.28 Aligned_cols=44 Identities=30% Similarity=0.801 Sum_probs=35.4
Q ss_pred ccccccCCCCC------CCeEcCCCCccChhHHHHHHhcC-CCCCCCCCCC
Q 018471 299 SKCTLCLSNRQ------DPTATPCGHVFCWNCIMEWCNEK-PECPLCRAPI 342 (355)
Q Consensus 299 ~~C~iC~~~~~------~p~~~~CgH~fC~~Ci~~~~~~~-~~CP~Cr~~~ 342 (355)
..|-||.+++. .|..+.|||.+|..|+...+... -.||.||.+.
T Consensus 4 ~~c~~c~~~~s~~~~~~~p~~l~c~h~~c~~c~~~l~~~~~i~cpfcR~~~ 54 (296)
T KOG4185|consen 4 PECEICNEDYSSEDGDHIPRVLKCGHTICQNCASKLLGNSRILCPFCRETT 54 (296)
T ss_pred CceeecCccccccCcccCCcccccCceehHhHHHHHhcCceeeccCCCCcc
Confidence 57888887765 46777899999999998877644 5899999984
No 81
>PF05290 Baculo_IE-1: Baculovirus immediate-early protein (IE-0); InterPro: IPR007954 This entry contains the Baculovirus immediate-early protein IE-0.
Probab=92.64 E-value=0.098 Score=42.86 Aligned_cols=50 Identities=24% Similarity=0.654 Sum_probs=39.6
Q ss_pred CCccccccCCCCCCCeEcC----CCCccChhHHHHHHh---cCCCCCCCCCCCCCCC
Q 018471 297 GVSKCTLCLSNRQDPTATP----CGHVFCWNCIMEWCN---EKPECPLCRAPITHSS 346 (355)
Q Consensus 297 ~~~~C~iC~~~~~~p~~~~----CgH~fC~~Ci~~~~~---~~~~CP~Cr~~~~~~~ 346 (355)
.-.+|.||.+.-.+...+. ||-..|..|-....+ -.+.||.|+.++..+.
T Consensus 79 ~lYeCnIC~etS~ee~FLKPneCCgY~iCn~Cya~LWK~~~~ypvCPvCkTSFKss~ 135 (140)
T PF05290_consen 79 KLYECNICKETSAEERFLKPNECCGYSICNACYANLWKFCNLYPVCPVCKTSFKSSS 135 (140)
T ss_pred CceeccCcccccchhhcCCcccccchHHHHHHHHHHHHHcccCCCCCcccccccccc
Confidence 4689999999877776663 999999999876433 4589999999887654
No 82
>KOG1941 consensus Acetylcholine receptor-associated protein of the synapse (rapsyn) [Extracellular structures]
Probab=92.29 E-value=0.041 Score=52.77 Aligned_cols=44 Identities=32% Similarity=0.696 Sum_probs=35.2
Q ss_pred CCccccccCCCCC----CCeEcCCCCccChhHHHHHHhcC--CCCCCCCC
Q 018471 297 GVSKCTLCLSNRQ----DPTATPCGHVFCWNCIMEWCNEK--PECPLCRA 340 (355)
Q Consensus 297 ~~~~C~iC~~~~~----~p~~~~CgH~fC~~Ci~~~~~~~--~~CP~Cr~ 340 (355)
-..-|..|.+.+- +--.+||.|+|+-.|+.+.+.++ ..||.||+
T Consensus 364 ~~L~Cg~CGe~~Glk~e~LqALpCsHIfH~rCl~e~L~~n~~rsCP~Crk 413 (518)
T KOG1941|consen 364 TELYCGLCGESIGLKNERLQALPCSHIFHLRCLQEILENNGTRSCPNCRK 413 (518)
T ss_pred HhhhhhhhhhhhcCCcccccccchhHHHHHHHHHHHHHhCCCCCCccHHH
Confidence 4678999988643 23568999999999999998644 58999983
No 83
>KOG2114 consensus Vacuolar assembly/sorting protein PEP5/VPS11 [Intracellular trafficking, secretion, and vesicular transport]
Probab=90.67 E-value=0.12 Score=54.18 Aligned_cols=42 Identities=31% Similarity=0.737 Sum_probs=35.0
Q ss_pred CCccccccCCCCCCCe-EcCCCCccChhHHHHHHhcCCCCCCCCCC
Q 018471 297 GVSKCTLCLSNRQDPT-ATPCGHVFCWNCIMEWCNEKPECPLCRAP 341 (355)
Q Consensus 297 ~~~~C~iC~~~~~~p~-~~~CgH~fC~~Ci~~~~~~~~~CP~Cr~~ 341 (355)
+..+|..|...+.-|+ .-.|||.|+..|+. .....||.|+..
T Consensus 839 q~skCs~C~~~LdlP~VhF~CgHsyHqhC~e---~~~~~CP~C~~e 881 (933)
T KOG2114|consen 839 QVSKCSACEGTLDLPFVHFLCGHSYHQHCLE---DKEDKCPKCLPE 881 (933)
T ss_pred eeeeecccCCccccceeeeecccHHHHHhhc---cCcccCCccchh
Confidence 4579999999988775 56899999999987 456799999763
No 84
>KOG3268 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=90.61 E-value=0.18 Score=43.35 Aligned_cols=49 Identities=31% Similarity=0.803 Sum_probs=35.2
Q ss_pred CCccccccCCCCCCC-----e--EcCCCCccChhHHHHHHhc------C-----CCCCCCCCCCCCC
Q 018471 297 GVSKCTLCLSNRQDP-----T--ATPCGHVFCWNCIMEWCNE------K-----PECPLCRAPITHS 345 (355)
Q Consensus 297 ~~~~C~iC~~~~~~p-----~--~~~CgH~fC~~Ci~~~~~~------~-----~~CP~Cr~~~~~~ 345 (355)
....|.||...--+. + ...||..|+.-|+..|++. . ..||.|..++..+
T Consensus 164 ~~~~cgicyayqldGTipDqtCdN~qCgkpFHqiCL~dWLRgilTsRQSFdiiFGeCPYCS~PialK 230 (234)
T KOG3268|consen 164 ELGACGICYAYQLDGTIPDQTCDNIQCGKPFHQICLTDWLRGILTSRQSFDIIFGECPYCSDPIALK 230 (234)
T ss_pred hhhcccceeeeecCCccccccccccccCCcHHHHHHHHHHHHHhhccceeeeeeccCCCCCCcceee
Confidence 456788887643322 2 2469999999999999862 1 2899999887643
No 85
>PHA03096 p28-like protein; Provisional
Probab=90.43 E-value=0.14 Score=48.10 Aligned_cols=42 Identities=29% Similarity=0.491 Sum_probs=30.0
Q ss_pred ccccccCCCCCC--------CeEcCCCCccChhHHHHHHhcC---CCCCCCCC
Q 018471 299 SKCTLCLSNRQD--------PTATPCGHVFCWNCIMEWCNEK---PECPLCRA 340 (355)
Q Consensus 299 ~~C~iC~~~~~~--------p~~~~CgH~fC~~Ci~~~~~~~---~~CP~Cr~ 340 (355)
..|.||++.... .....|.|.||..|+..|.... ..||.|+.
T Consensus 179 k~c~ic~e~~~~k~~~~~~fgil~~c~h~fc~~ci~~wr~~~~~~e~~~~c~~ 231 (284)
T PHA03096 179 KICGICLENIKAKYIIKKYYGILSEIKHEFNIFCIKIWMTESLYKETEPENRR 231 (284)
T ss_pred hhcccchhhhhhhccccccccccccCCcHHHHHHHHHHHHhhhhcccCccccc
Confidence 789999986542 2344799999999999997532 34555544
No 86
>KOG3113 consensus Uncharacterized conserved protein [Function unknown]
Probab=90.13 E-value=0.3 Score=44.34 Aligned_cols=54 Identities=19% Similarity=0.313 Sum_probs=43.0
Q ss_pred CCCccccccCCCCCCC----eEcCCCCccChhHHHHHHhcCCCCCCCCCCCCCCCceecc
Q 018471 296 PGVSKCTLCLSNRQDP----TATPCGHVFCWNCIMEWCNEKPECPLCRAPITHSSLVCLY 351 (355)
Q Consensus 296 ~~~~~C~iC~~~~~~p----~~~~CgH~fC~~Ci~~~~~~~~~CP~Cr~~~~~~~~~~l~ 351 (355)
...+.|||-.-+|... ...+|||+|-..-+.+.- ...|+.|.+.+...+++.|=
T Consensus 109 ~a~fiCPvtgleMng~~~F~~l~~CGcV~SerAlKeik--as~C~~C~a~y~~~dvIvlN 166 (293)
T KOG3113|consen 109 RARFICPVTGLEMNGKYRFCALRCCGCVFSERALKEIK--ASVCHVCGAAYQEDDVIVLN 166 (293)
T ss_pred cceeecccccceecceEEEEEEeccceeccHHHHHHhh--hccccccCCcccccCeEeeC
Confidence 4578999877666543 345899999999887653 57899999999999999873
No 87
>KOG3039 consensus Uncharacterized conserved protein [Function unknown]
Probab=89.68 E-value=0.21 Score=45.19 Aligned_cols=34 Identities=32% Similarity=0.553 Sum_probs=30.2
Q ss_pred CCCccccccCCCCCCCeEcCCCCccChhHHHHHH
Q 018471 296 PGVSKCTLCLSNRQDPTATPCGHVFCWNCIMEWC 329 (355)
Q Consensus 296 ~~~~~C~iC~~~~~~p~~~~CgH~fC~~Ci~~~~ 329 (355)
.+-..|.+|+.+..+|++++-||+||..||.+++
T Consensus 41 K~FdcCsLtLqPc~dPvit~~GylfdrEaILe~i 74 (303)
T KOG3039|consen 41 KPFDCCSLTLQPCRDPVITPDGYLFDREAILEYI 74 (303)
T ss_pred CCcceeeeecccccCCccCCCCeeeeHHHHHHHH
Confidence 3456789999999999999999999999998865
No 88
>KOG2034 consensus Vacuolar sorting protein PEP3/VPS18 [Intracellular trafficking, secretion, and vesicular transport]
Probab=89.38 E-value=0.17 Score=53.50 Aligned_cols=34 Identities=26% Similarity=0.618 Sum_probs=26.8
Q ss_pred CCCccccccCCCCCC-C-eEcCCCCccChhHHHHHH
Q 018471 296 PGVSKCTLCLSNRQD-P-TATPCGHVFCWNCIMEWC 329 (355)
Q Consensus 296 ~~~~~C~iC~~~~~~-p-~~~~CgH~fC~~Ci~~~~ 329 (355)
.....|.+|...+.. | ..-||||.|+++|+....
T Consensus 815 ep~d~C~~C~~~ll~~pF~vf~CgH~FH~~Cl~~~v 850 (911)
T KOG2034|consen 815 EPQDSCDHCGRPLLIKPFYVFPCGHCFHRDCLIRHV 850 (911)
T ss_pred cCccchHHhcchhhcCcceeeeccchHHHHHHHHHH
Confidence 467789999987643 3 456999999999998764
No 89
>PF10272 Tmpp129: Putative transmembrane protein precursor; InterPro: IPR018801 This entry consists of proteins conserved from worms to humans. They are purported to be transmembrane protein-precursors but their function is unknown.
Probab=89.14 E-value=0.46 Score=45.97 Aligned_cols=34 Identities=29% Similarity=0.820 Sum_probs=26.2
Q ss_pred CCCccChhHHHHHHh-------------cCCCCCCCCCCCCCCCcee
Q 018471 316 CGHVFCWNCIMEWCN-------------EKPECPLCRAPITHSSLVC 349 (355)
Q Consensus 316 CgH~fC~~Ci~~~~~-------------~~~~CP~Cr~~~~~~~~~~ 349 (355)
|....|-+|+.+|.. .+..||.||+.+...|+..
T Consensus 311 CRPmWC~~Cm~kwFasrQd~~~~~~Wl~~~~~CPtCRa~FCilDV~~ 357 (358)
T PF10272_consen 311 CRPMWCLECMGKWFASRQDQQHPETWLSGKCPCPTCRAKFCILDVCY 357 (358)
T ss_pred ccchHHHHHHHHHhhhcCCCCChhhhhcCCCCCCCCcccceeeeeec
Confidence 455679999998864 2348999999998877754
No 90
>KOG4445 consensus Uncharacterized conserved protein, contains RWD domain [Function unknown]
Probab=88.93 E-value=0.11 Score=48.24 Aligned_cols=48 Identities=29% Similarity=0.719 Sum_probs=35.4
Q ss_pred CCccccccCCCCCC---CeEcCCCCccChhHHHHHHhc-----------------------CCCCCCCCCCCCC
Q 018471 297 GVSKCTLCLSNRQD---PTATPCGHVFCWNCIMEWCNE-----------------------KPECPLCRAPITH 344 (355)
Q Consensus 297 ~~~~C~iC~~~~~~---p~~~~CgH~fC~~Ci~~~~~~-----------------------~~~CP~Cr~~~~~ 344 (355)
....|.||+--+.+ -+.++|-|-|+..|+.+++.. ...||+||..+..
T Consensus 114 p~gqCvICLygfa~~~~ft~T~C~Hy~H~~ClaRyl~~~~~~lrqe~q~~~~~~qh~~~~~eavcpVcre~i~~ 187 (368)
T KOG4445|consen 114 PNGQCVICLYGFASSPAFTVTACDHYMHFACLARYLTECLTGLRQEIQDAQKERQHMKEQVEAVCPVCRERIKI 187 (368)
T ss_pred CCCceEEEEEeecCCCceeeehhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhHhhhhhHhhhhccc
Confidence 45678888765543 367899999999999876531 1379999998753
No 91
>KOG1100 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=88.52 E-value=0.2 Score=44.88 Aligned_cols=39 Identities=33% Similarity=0.781 Sum_probs=31.5
Q ss_pred ccccCCCCCCCeEcCCCCc-cChhHHHHHHhcCCCCCCCCCCCC
Q 018471 301 CTLCLSNRQDPTATPCGHV-FCWNCIMEWCNEKPECPLCRAPIT 343 (355)
Q Consensus 301 C~iC~~~~~~p~~~~CgH~-fC~~Ci~~~~~~~~~CP~Cr~~~~ 343 (355)
|-.|.+.-..-...||.|+ +|..|-.. ...||+|+.+..
T Consensus 161 Cr~C~~~~~~VlllPCrHl~lC~~C~~~----~~~CPiC~~~~~ 200 (207)
T KOG1100|consen 161 CRKCGEREATVLLLPCRHLCLCGICDES----LRICPICRSPKT 200 (207)
T ss_pred ceecCcCCceEEeecccceEeccccccc----CccCCCCcChhh
Confidence 9999998777778899996 89999542 467999987654
No 92
>KOG3579 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=88.03 E-value=0.3 Score=45.04 Aligned_cols=48 Identities=29% Similarity=0.683 Sum_probs=37.3
Q ss_pred CCCccccccCCCCCCCeEcCC----CCccChhHHHHHHhcC-----------CCCCCCCCCCC
Q 018471 296 PGVSKCTLCLSNRQDPTATPC----GHVFCWNCIMEWCNEK-----------PECPLCRAPIT 343 (355)
Q Consensus 296 ~~~~~C~iC~~~~~~p~~~~C----gH~fC~~Ci~~~~~~~-----------~~CP~Cr~~~~ 343 (355)
.....|.+|.+.+.+...+.| .|.||..|-.+.++.. .+||+....++
T Consensus 266 ~apLcCTLC~ERLEDTHFVQCPSVp~HKFCFPCSResIK~Qg~sgevYCPSGdkCPLvgS~vP 328 (352)
T KOG3579|consen 266 SAPLCCTLCHERLEDTHFVQCPSVPSHKFCFPCSRESIKQQGASGEVYCPSGDKCPLVGSNVP 328 (352)
T ss_pred CCceeehhhhhhhccCceeecCCCcccceecccCHHHHHhhcCCCceeCCCCCcCcccCCccc
Confidence 456899999999999888877 6889999998887632 26777765543
No 93
>PHA02825 LAP/PHD finger-like protein; Provisional
Probab=87.70 E-value=0.65 Score=39.41 Aligned_cols=48 Identities=21% Similarity=0.521 Sum_probs=35.0
Q ss_pred CCCccccccCCCCCCCeEcCCCCc-----cChhHHHHHHhc--CCCCCCCCCCCCC
Q 018471 296 PGVSKCTLCLSNRQDPTATPCGHV-----FCWNCIMEWCNE--KPECPLCRAPITH 344 (355)
Q Consensus 296 ~~~~~C~iC~~~~~~p~~~~CgH~-----fC~~Ci~~~~~~--~~~CP~Cr~~~~~ 344 (355)
..+..|-||.+... +..-||... -+..|+..|+.. ...|+.|+.+...
T Consensus 6 ~~~~~CRIC~~~~~-~~~~PC~CkGs~k~VH~sCL~rWi~~s~~~~CeiC~~~Y~i 60 (162)
T PHA02825 6 LMDKCCWICKDEYD-VVTNYCNCKNENKIVHKECLEEWINTSKNKSCKICNGPYNI 60 (162)
T ss_pred CCCCeeEecCCCCC-CccCCcccCCCchHHHHHHHHHHHhcCCCCcccccCCeEEE
Confidence 35679999998754 334566542 488999999964 4689999987754
No 94
>KOG1428 consensus Inhibitor of type V adenylyl cyclases/Neuronal presynaptic protein Highwire/PAM/RPM-1 [Signal transduction mechanisms]
Probab=87.10 E-value=0.3 Score=54.17 Aligned_cols=51 Identities=22% Similarity=0.639 Sum_probs=38.3
Q ss_pred CCCCccccccCCCCC---CCeEcCCCCccChhHHHHHHhcC----------CCCCCCCCCCCCC
Q 018471 295 APGVSKCTLCLSNRQ---DPTATPCGHVFCWNCIMEWCNEK----------PECPLCRAPITHS 345 (355)
Q Consensus 295 ~~~~~~C~iC~~~~~---~p~~~~CgH~fC~~Ci~~~~~~~----------~~CP~Cr~~~~~~ 345 (355)
...+..|.||..+.- ..+.+.|+|+|+..|....+.+. ..||+|..++...
T Consensus 3483 QD~DDmCmICFTE~L~AAP~IqL~C~HiFHlqC~R~vLE~RW~GPRItF~FisCPiC~n~InH~ 3546 (3738)
T KOG1428|consen 3483 QDADDMCMICFTEALSAAPAIQLDCSHIFHLQCCRRVLENRWLGPRITFGFISCPICKNKINHI 3546 (3738)
T ss_pred cccCceEEEEehhhhCCCcceecCCccchhHHHHHHHHHhcccCCeeEEeeeecccccchhhhH
Confidence 356778999987543 34678999999999998765432 2899999887653
No 95
>PF03854 zf-P11: P-11 zinc finger; InterPro: IPR003224 Zinc finger (Znf) domains are relatively small protein motifs which contain multiple finger-like protrusions that make tandem contacts with their target molecule. Some of these domains bind zinc, but many do not; instead binding other metals such as iron, or no metal at all. For example, some family members form salt bridges to stabilise the finger-like folds. They were first identified as a DNA-binding motif in transcription factor TFIIIA from Xenopus laevis (African clawed frog), however they are now recognised to bind DNA, RNA, protein and/or lipid substrates [, , , , ]. Their binding properties depend on the amino acid sequence of the finger domains and of the linker between fingers, as well as on the higher-order structures and the number of fingers. Znf domains are often found in clusters, where fingers can have different binding specificities. There are many superfamilies of Znf motifs, varying in both sequence and structure. They display considerable versatility in binding modes, even between members of the same class (e.g. some bind DNA, others protein), suggesting that Znf motifs are stable scaffolds that have evolved specialised functions. For example, Znf-containing proteins function in gene transcription, translation, mRNA trafficking, cytoskeleton organisation, epithelial development, cell adhesion, protein folding, chromatin remodelling and zinc sensing, to name but a few []. Zinc-binding motifs are stable structures, and they rarely undergo conformational changes upon binding their target. The RING-finger is a specialised type of Zn-finger of 40 to 60 residues that binds two atoms of zinc, and is probably involved in mediating protein-protein interactions [, , ]. There are two different variants, the C3HC4-type and a C3H2C3-type, which is clearly related despite the different cysteine/histidine pattern. The latter type is sometimes referred to as 'RING-H2 finger'. The RING domain is a protein interaction domain which has been implicated in a range of diverse biological processes. Several 3D-structures for RING-fingers are known [, ]. The 3D structure of the zinc ligation system is unique to the RING domain and is referred to as the 'cross-brace' motif. The spacing of the cysteines in such a domain is: C-x(2)-C-x(9 to 39)-C-x(1 to 3)-H-x(2 to 3)-C-x(2)-C-x(4 to 48)-C-x(2)-C Metal ligand pairs one and three co-ordinate to bind one zinc ion, whilst pairs two and four bind the second. This entry represents RING finger protein Z, a small polypeptide found in some negative-strand RNA viruses including Lassa fever virus, which plays a crucial role in virion assembly and budding. RING finger Z has been shown to interact with several host proteins, including promyelocytic leukemia protein and the eukaryotic translation initiation factor 4E [, ]. It is sufficient in the absence of any other viral proteins to release virus-like particles from the infected cell []. This protein is also responsible for arenavirus superinfection exclusion; expression of this protein in a host cell strongly and specifically inhibits areanavirus transcription and replication []. More information about these proteins can be found at Protein of the Month: Zinc Fingers [].; GO: 0003723 RNA binding, 0008270 zinc ion binding; PDB: 2KO5_A.
Probab=86.93 E-value=0.22 Score=33.24 Aligned_cols=45 Identities=24% Similarity=0.737 Sum_probs=26.1
Q ss_pred ccccccCCCCCCCeEcCCC-CccChhHHHHHHhcCCCCCCCCCCCCCC
Q 018471 299 SKCTLCLSNRQDPTATPCG-HVFCWNCIMEWCNEKPECPLCRAPITHS 345 (355)
Q Consensus 299 ~~C~iC~~~~~~p~~~~Cg-H~fC~~Ci~~~~~~~~~CP~Cr~~~~~~ 345 (355)
..|.-|+- .+...+.|. |--|..|+...+.....||+|..+++.+
T Consensus 3 ~nCKsCWf--~~k~Li~C~dHYLCl~CLt~ml~~s~~C~iC~~~LPtk 48 (50)
T PF03854_consen 3 YNCKSCWF--ANKGLIKCSDHYLCLNCLTLMLSRSDRCPICGKPLPTK 48 (50)
T ss_dssp ----SS-S----SSEEE-SS-EEEHHHHHHT-SSSSEETTTTEE----
T ss_pred ccChhhhh--cCCCeeeecchhHHHHHHHHHhccccCCCcccCcCccc
Confidence 34666654 345566787 6689999999998999999999988753
No 96
>COG5109 Uncharacterized conserved protein, contains RING Zn-finger [General function prediction only]
Probab=86.81 E-value=0.43 Score=44.72 Aligned_cols=55 Identities=16% Similarity=0.345 Sum_probs=41.2
Q ss_pred CCccccccCCCCC---CCeEcCCCCccChhHHHHHHhcC---CCCCCCCCCCCCCCceecc
Q 018471 297 GVSKCTLCLSNRQ---DPTATPCGHVFCWNCIMEWCNEK---PECPLCRAPITHSSLVCLY 351 (355)
Q Consensus 297 ~~~~C~iC~~~~~---~p~~~~CgH~fC~~Ci~~~~~~~---~~CP~Cr~~~~~~~~~~l~ 351 (355)
.-+.||+-.+.-+ .|+.+.|||+.-..-+....++. +.||.|-......++.++|
T Consensus 335 s~FiCPVlKe~~t~ENpP~ml~CgHVIskeal~~LS~nG~~~FKCPYCP~~~~~~~~~rvr 395 (396)
T COG5109 335 SLFICPVLKELCTDENPPVMLECGHVISKEALSVLSQNGVLSFKCPYCPEMSKYENILRVR 395 (396)
T ss_pred ceeeccccHhhhcccCCCeeeeccceeeHHHHHHHhhcCcEEeeCCCCCcchhhhhhhccc
Confidence 5678987544332 47899999999999888776643 7999997776667766665
No 97
>KOG3002 consensus Zn finger protein [General function prediction only]
Probab=86.74 E-value=0.49 Score=44.77 Aligned_cols=46 Identities=28% Similarity=0.699 Sum_probs=36.7
Q ss_pred CCCCccccccCCCCCCCeEc-CCCCccChhHHHHHHhcCCCCCCCCCCCC
Q 018471 295 APGVSKCTLCLSNRQDPTAT-PCGHVFCWNCIMEWCNEKPECPLCRAPIT 343 (355)
Q Consensus 295 ~~~~~~C~iC~~~~~~p~~~-~CgH~fC~~Ci~~~~~~~~~CP~Cr~~~~ 343 (355)
..+-..||+|.+.+..|+.- +=||+-|..|-. +....||.|+.++.
T Consensus 45 ~~~lleCPvC~~~l~~Pi~QC~nGHlaCssC~~---~~~~~CP~Cr~~~g 91 (299)
T KOG3002|consen 45 DLDLLDCPVCFNPLSPPIFQCDNGHLACSSCRT---KVSNKCPTCRLPIG 91 (299)
T ss_pred chhhccCchhhccCcccceecCCCcEehhhhhh---hhcccCCccccccc
Confidence 34678999999998877543 458999999964 34578999999887
No 98
>PF02891 zf-MIZ: MIZ/SP-RING zinc finger; InterPro: IPR004181 Zinc finger (Znf) domains are relatively small protein motifs which contain multiple finger-like protrusions that make tandem contacts with their target molecule. Some of these domains bind zinc, but many do not; instead binding other metals such as iron, or no metal at all. For example, some family members form salt bridges to stabilise the finger-like folds. They were first identified as a DNA-binding motif in transcription factor TFIIIA from Xenopus laevis (African clawed frog), however they are now recognised to bind DNA, RNA, protein and/or lipid substrates [, , , , ]. Their binding properties depend on the amino acid sequence of the finger domains and of the linker between fingers, as well as on the higher-order structures and the number of fingers. Znf domains are often found in clusters, where fingers can have different binding specificities. There are many superfamilies of Znf motifs, varying in both sequence and structure. They display considerable versatility in binding modes, even between members of the same class (e.g. some bind DNA, others protein), suggesting that Znf motifs are stable scaffolds that have evolved specialised functions. For example, Znf-containing proteins function in gene transcription, translation, mRNA trafficking, cytoskeleton organisation, epithelial development, cell adhesion, protein folding, chromatin remodelling and zinc sensing, to name but a few []. Zinc-binding motifs are stable structures, and they rarely undergo conformational changes upon binding their target. This entry represents MIZ-type zinc finger domains. Miz1 (Msx-interacting-zinc finger) is a zinc finger-containing protein with homology to the yeast protein, Nfi-1. Miz1 is a sequence specific DNA binding protein that can function as a positive-acting transcription factor. Miz1 binds to the homeobox protein Msx2, enhancing the specific DNA-binding ability of Msx2 []. Other proteins containing this domain include the human pias family (protein inhibitor of activated STAT protein). More information about these proteins can be found at Protein of the Month: Zinc Fingers [].; GO: 0008270 zinc ion binding; PDB: 3I2D_A.
Probab=86.30 E-value=0.46 Score=32.41 Aligned_cols=42 Identities=26% Similarity=0.726 Sum_probs=21.6
Q ss_pred ccccccCCCCCCCeEc-CCCCccChhHHHHHHh-----cCCCCCCCCCC
Q 018471 299 SKCTLCLSNRQDPTAT-PCGHVFCWNCIMEWCN-----EKPECPLCRAP 341 (355)
Q Consensus 299 ~~C~iC~~~~~~p~~~-~CgH~fC~~Ci~~~~~-----~~~~CP~Cr~~ 341 (355)
..|++....+..|+.. .|.|.-|.+- ..|+. ....||.|+++
T Consensus 3 L~CPls~~~i~~P~Rg~~C~H~~CFDl-~~fl~~~~~~~~W~CPiC~~~ 50 (50)
T PF02891_consen 3 LRCPLSFQRIRIPVRGKNCKHLQCFDL-ESFLESNQRTPKWKCPICNKP 50 (50)
T ss_dssp SB-TTTSSB-SSEEEETT--SS--EEH-HHHHHHHHHS---B-TTT---
T ss_pred eeCCCCCCEEEeCccCCcCcccceECH-HHHHHHhhccCCeECcCCcCc
Confidence 5799999999988765 7999988654 33332 33589999764
No 99
>KOG0298 consensus DEAD box-containing helicase-like transcription factor/DNA repair protein [Replication, recombination and repair]
Probab=85.70 E-value=0.17 Score=55.43 Aligned_cols=44 Identities=30% Similarity=0.793 Sum_probs=39.1
Q ss_pred CCccccccCCCCC-CCeEcCCCCccChhHHHHHHhcCCCCCCCCC
Q 018471 297 GVSKCTLCLSNRQ-DPTATPCGHVFCWNCIMEWCNEKPECPLCRA 340 (355)
Q Consensus 297 ~~~~C~iC~~~~~-~p~~~~CgH~fC~~Ci~~~~~~~~~CP~Cr~ 340 (355)
....|.+|.+.+. ......|||-+|..|...|+..+..||.|..
T Consensus 1152 ~~~~c~ic~dil~~~~~I~~cgh~~c~~c~~~~l~~~s~~~~~ks 1196 (1394)
T KOG0298|consen 1152 GHFVCEICLDILRNQGGIAGCGHEPCCRCDELWLYASSRCPICKS 1196 (1394)
T ss_pred cccchHHHHHHHHhcCCeeeechhHhhhHHHHHHHHhccCcchhh
Confidence 4569999999888 5678899999999999999999999999974
No 100
>PF08746 zf-RING-like: RING-like domain; InterPro: IPR014857 This is a zinc finger domain that is related to the C3HC4 RING finger domain (IPR001841 from INTERPRO). ; PDB: 3NW0_A 2CT0_A.
Probab=85.21 E-value=0.9 Score=29.91 Aligned_cols=38 Identities=18% Similarity=0.582 Sum_probs=21.3
Q ss_pred ccccCCCCCCCeEc---CCCCccChhHHHHHHhcCC--CCCCC
Q 018471 301 CTLCLSNRQDPTAT---PCGHVFCWNCIMEWCNEKP--ECPLC 338 (355)
Q Consensus 301 C~iC~~~~~~p~~~---~CgH~fC~~Ci~~~~~~~~--~CP~C 338 (355)
|.+|.+.......= .|+-.++..|+..+++... .||.|
T Consensus 1 C~~C~~iv~~G~~C~~~~C~~r~H~~C~~~y~r~~~~~~CP~C 43 (43)
T PF08746_consen 1 CEACKEIVTQGQRCSNRDCNVRLHDDCFKKYFRHRSNPKCPNC 43 (43)
T ss_dssp -TTT-SB-SSSEE-SS--S--EE-HHHHHHHTTT-SS-B-TTT
T ss_pred CcccchhHeeeccCCCCccCchHHHHHHHHHHhcCCCCCCcCC
Confidence 56777766555433 4888899999999987543 79987
No 101
>KOG1940 consensus Zn-finger protein [General function prediction only]
Probab=84.23 E-value=0.55 Score=43.71 Aligned_cols=43 Identities=28% Similarity=0.610 Sum_probs=35.8
Q ss_pred CccccccCCCCC----CCeEcCCCCccChhHHHHHHhcCCCCCCCCC
Q 018471 298 VSKCTLCLSNRQ----DPTATPCGHVFCWNCIMEWCNEKPECPLCRA 340 (355)
Q Consensus 298 ~~~C~iC~~~~~----~p~~~~CgH~fC~~Ci~~~~~~~~~CP~Cr~ 340 (355)
+..||+|.+.+. .+...+|||.....|..........||+|.+
T Consensus 158 ~~ncPic~e~l~~s~~~~~~~~CgH~~h~~cf~e~~~~~y~CP~C~~ 204 (276)
T KOG1940|consen 158 EFNCPICKEYLFLSFEDAGVLKCGHYMHSRCFEEMICEGYTCPICSK 204 (276)
T ss_pred cCCCchhHHHhccccccCCccCcccchHHHHHHHHhccCCCCCcccc
Confidence 344999988654 4667899999999999998877799999977
No 102
>KOG3899 consensus Uncharacterized conserved protein [Function unknown]
Probab=83.70 E-value=0.53 Score=43.66 Aligned_cols=35 Identities=23% Similarity=0.773 Sum_probs=27.4
Q ss_pred CCCccChhHHHHHHh-------------cCCCCCCCCCCCCCCCceec
Q 018471 316 CGHVFCWNCIMEWCN-------------EKPECPLCRAPITHSSLVCL 350 (355)
Q Consensus 316 CgH~fC~~Ci~~~~~-------------~~~~CP~Cr~~~~~~~~~~l 350 (355)
|....|..|+.+|.. .+..||.||+.+...++..+
T Consensus 325 crp~wc~~cla~~f~~rq~~v~r~~~~~~~~~cp~cr~~fci~dv~~v 372 (381)
T KOG3899|consen 325 CRPLWCRSCLAQIFIGRQDNVYRYEYHRGSAQCPTCRKNFCIRDVHCV 372 (381)
T ss_pred cccHHHHHHHHHHHhhcccchhHHHHHhcCCCCcchhhceEEeeeeEE
Confidence 556678899988763 34589999999998887665
No 103
>KOG1952 consensus Transcription factor NF-X1, contains NFX-type Zn2+-binding and R3H domains [Transcription]
Probab=83.48 E-value=0.76 Score=48.55 Aligned_cols=45 Identities=31% Similarity=0.826 Sum_probs=35.4
Q ss_pred CCCccccccCCCCCC--C--eEcCCCCccChhHHHHHHhc-------CCCCCCCCC
Q 018471 296 PGVSKCTLCLSNRQD--P--TATPCGHVFCWNCIMEWCNE-------KPECPLCRA 340 (355)
Q Consensus 296 ~~~~~C~iC~~~~~~--p--~~~~CgH~fC~~Ci~~~~~~-------~~~CP~Cr~ 340 (355)
...+.|.||.+.+.. | ....|=|+|+..||..|.+. ...||.|..
T Consensus 189 ~~~yeCmIC~e~I~~t~~~WSC~sCYhVFHl~CI~~WArs~ek~~~~~WrCP~Cqs 244 (950)
T KOG1952|consen 189 NRKYECMICTERIKRTAPVWSCKSCYHVFHLNCIKKWARSSEKTGQDGWRCPACQS 244 (950)
T ss_pred cCceEEEEeeeeccccCCceecchhhhhhhHHHHHHHHHHhhhccCccccCCcccc
Confidence 468899999998763 2 34468899999999999862 248999973
No 104
>PF05883 Baculo_RING: Baculovirus U-box/Ring-like domain; InterPro: IPR008573 This family consists of several Baculovirus proteins of around 130 residues in length. The function of this family is unknown, but it appears to be related to the U-box and ring finger domain by profile-profile comparison.
Probab=83.33 E-value=0.47 Score=39.21 Aligned_cols=35 Identities=23% Similarity=0.703 Sum_probs=27.0
Q ss_pred CccccccCCCCCC--C-eEcCCC------CccChhHHHHHHhcC
Q 018471 298 VSKCTLCLSNRQD--P-TATPCG------HVFCWNCIMEWCNEK 332 (355)
Q Consensus 298 ~~~C~iC~~~~~~--p-~~~~Cg------H~fC~~Ci~~~~~~~ 332 (355)
..+|.||++...+ . +.++|| |.||..|+.+|.+++
T Consensus 26 ~~EC~IC~~~I~~~~GvV~vt~~g~lnLEkmfc~~C~~rw~~~~ 69 (134)
T PF05883_consen 26 TVECQICFDRIDNNDGVVYVTDGGTLNLEKMFCADCDKRWRRER 69 (134)
T ss_pred CeeehhhhhhhhcCCCEEEEecCCeehHHHHHHHHHHHHHHhhc
Confidence 6799999998776 3 345665 679999999996544
No 105
>COG5220 TFB3 Cdk activating kinase (CAK)/RNA polymerase II transcription initiation/nucleotide excision repair factor TFIIH, subunit TFB3 [Cell division and chromosome partitioning / Transcription / DNA replication, recombination, and repair]
Probab=83.10 E-value=0.36 Score=43.48 Aligned_cols=46 Identities=28% Similarity=0.715 Sum_probs=33.8
Q ss_pred CCCccccccCCCCC-CCe----EcC-CCCccChhHHHHHHhcC-CCCC--CCCCC
Q 018471 296 PGVSKCTLCLSNRQ-DPT----ATP-CGHVFCWNCIMEWCNEK-PECP--LCRAP 341 (355)
Q Consensus 296 ~~~~~C~iC~~~~~-~p~----~~~-CgH~fC~~Ci~~~~~~~-~~CP--~Cr~~ 341 (355)
..+..||+|..+.. +|- .-| |-|..|-+|+.+.+... ..|| -|.+-
T Consensus 8 ~~d~~CPvCksDrYLnPdik~linPECyHrmCESCvdRIFs~GpAqCP~~gC~kI 62 (314)
T COG5220 8 MEDRRCPVCKSDRYLNPDIKILINPECYHRMCESCVDRIFSRGPAQCPYKGCGKI 62 (314)
T ss_pred hhcccCCccccccccCCCeEEEECHHHHHHHHHHHHHHHhcCCCCCCCCccHHHH
Confidence 35679999998653 442 224 99999999999988655 4898 67653
No 106
>PHA02862 5L protein; Provisional
Probab=82.59 E-value=1.1 Score=37.37 Aligned_cols=45 Identities=29% Similarity=0.680 Sum_probs=32.4
Q ss_pred ccccccCCCCCCCeEcCCCC-----ccChhHHHHHHh--cCCCCCCCCCCCCC
Q 018471 299 SKCTLCLSNRQDPTATPCGH-----VFCWNCIMEWCN--EKPECPLCRAPITH 344 (355)
Q Consensus 299 ~~C~iC~~~~~~p~~~~CgH-----~fC~~Ci~~~~~--~~~~CP~Cr~~~~~ 344 (355)
..|=||.+.-.+. .-||.. .-+..|+.+|+. .+..|++|+.+...
T Consensus 3 diCWIC~~~~~e~-~~PC~C~GS~K~VHq~CL~~WIn~S~k~~CeLCkteY~I 54 (156)
T PHA02862 3 DICWICNDVCDER-NNFCGCNEEYKVVHIKCMQLWINYSKKKECNLCKTKYNI 54 (156)
T ss_pred CEEEEecCcCCCC-cccccccCcchhHHHHHHHHHHhcCCCcCccCCCCeEEE
Confidence 4688898865433 356643 357899999996 34689999987753
No 107
>KOG3842 consensus Adaptor protein Pellino [Signal transduction mechanisms]
Probab=81.97 E-value=1.5 Score=41.28 Aligned_cols=49 Identities=24% Similarity=0.680 Sum_probs=33.3
Q ss_pred CCCccccccCCCCC-----------------CC--eEcCCCCccChhHHHHHHhc---------CCCCCCCCCCCCC
Q 018471 296 PGVSKCTLCLSNRQ-----------------DP--TATPCGHVFCWNCIMEWCNE---------KPECPLCRAPITH 344 (355)
Q Consensus 296 ~~~~~C~iC~~~~~-----------------~p--~~~~CgH~fC~~Ci~~~~~~---------~~~CP~Cr~~~~~ 344 (355)
..+.+||+|+..-. .| ...||||+.-..-..-|.+. +..||.|-..+..
T Consensus 339 ~~~r~CPmC~~~gp~V~L~lG~E~~f~vD~G~pthaF~PCGHv~sekt~~YWs~iplPhGT~~f~a~CPFC~~~L~g 415 (429)
T KOG3842|consen 339 QRERECPMCRVVGPYVPLWLGCEAGFYVDAGPPTHAFNPCGHVCSEKTVKYWSQIPLPHGTHAFHAACPFCATQLAG 415 (429)
T ss_pred cccCcCCeeeeecceeeeeccccceeEecCCCcccccCCcccccchhhhhHhhcCcCCCccccccccCcchhhhhcc
Confidence 45789999976411 11 34589998666666667651 3589999887753
No 108
>PRK04023 DNA polymerase II large subunit; Validated
Probab=81.93 E-value=1 Score=48.61 Aligned_cols=52 Identities=27% Similarity=0.388 Sum_probs=38.3
Q ss_pred CCCCCccccccCCCCCCCeEcCCCC-----ccChhHHHHHHhcCCCCCCCCCCCCCCCc
Q 018471 294 AAPGVSKCTLCLSNRQDPTATPCGH-----VFCWNCIMEWCNEKPECPLCRAPITHSSL 347 (355)
Q Consensus 294 ~~~~~~~C~iC~~~~~~p~~~~CgH-----~fC~~Ci~~~~~~~~~CP~Cr~~~~~~~~ 347 (355)
.......|+-|........|..||. .||..|-. ......||.|........-
T Consensus 622 VEVg~RfCpsCG~~t~~frCP~CG~~Te~i~fCP~CG~--~~~~y~CPKCG~El~~~s~ 678 (1121)
T PRK04023 622 VEIGRRKCPSCGKETFYRRCPFCGTHTEPVYRCPRCGI--EVEEDECEKCGREPTPYSK 678 (1121)
T ss_pred ecccCccCCCCCCcCCcccCCCCCCCCCcceeCccccC--cCCCCcCCCCCCCCCccce
Confidence 4457889999998876667778995 49999943 3344689999988775443
No 109
>PF04216 FdhE: Protein involved in formate dehydrogenase formation; InterPro: IPR006452 This family of sequences describe an accessory protein required for the assembly of formate dehydrogenase of certain proteobacteria although not present in the final complex []. The exact nature of the function of FdhE in the assembly of the complex is unknown, but considering the presence of selenocysteine, molybdopterin, iron-sulphur clusters and cytochrome b556, it is likely to be involved in the insertion of cofactors. ; GO: 0005737 cytoplasm; PDB: 2FIY_B.
Probab=79.85 E-value=0.26 Score=46.50 Aligned_cols=46 Identities=22% Similarity=0.382 Sum_probs=24.1
Q ss_pred CCCccccccCCCCCCCeEcCC-----CCccChhHHHHHHhcCCCCCCCCCC
Q 018471 296 PGVSKCTLCLSNRQDPTATPC-----GHVFCWNCIMEWCNEKPECPLCRAP 341 (355)
Q Consensus 296 ~~~~~C~iC~~~~~~p~~~~C-----gH~fC~~Ci~~~~~~~~~CP~Cr~~ 341 (355)
+....||+|.+.+.-.+..+= .|.+|..|-..|-.....||.|...
T Consensus 170 w~~g~CPvCGs~P~~s~l~~~~~~G~R~L~Cs~C~t~W~~~R~~Cp~Cg~~ 220 (290)
T PF04216_consen 170 WQRGYCPVCGSPPVLSVLRGGEREGKRYLHCSLCGTEWRFVRIKCPYCGNT 220 (290)
T ss_dssp TT-SS-TTT---EEEEEEE------EEEEEETTT--EEE--TTS-TTT---
T ss_pred ccCCcCCCCCCcCceEEEecCCCCccEEEEcCCCCCeeeecCCCCcCCCCC
Confidence 456899999997654444332 3679999999998888899999765
No 110
>TIGR01562 FdhE formate dehydrogenase accessory protein FdhE. The only sequence scoring between trusted and noise is that from Aquifex aeolicus, which shows certain structural differences from the proteobacterial forms in the alignment. However it is notable that A. aeolicus also has a sequence scoring above trusted to the alpha subunit of formate dehydrogenase (TIGR01553).
Probab=79.54 E-value=0.61 Score=44.27 Aligned_cols=46 Identities=22% Similarity=0.496 Sum_probs=34.8
Q ss_pred CCCccccccCCCCCCCeEc----CCC--CccChhHHHHHHhcCCCCCCCCCC
Q 018471 296 PGVSKCTLCLSNRQDPTAT----PCG--HVFCWNCIMEWCNEKPECPLCRAP 341 (355)
Q Consensus 296 ~~~~~C~iC~~~~~~p~~~----~Cg--H~fC~~Ci~~~~~~~~~CP~Cr~~ 341 (355)
+....||+|.+.+...+.. .=| +.+|..|-.+|-.....||.|...
T Consensus 182 ~~~~~CPvCGs~P~~s~~~~~~~~~G~RyL~CslC~teW~~~R~~C~~Cg~~ 233 (305)
T TIGR01562 182 ESRTLCPACGSPPVASMVRQGGKETGLRYLSCSLCATEWHYVRVKCSHCEES 233 (305)
T ss_pred CCCCcCCCCCChhhhhhhcccCCCCCceEEEcCCCCCcccccCccCCCCCCC
Confidence 3467999999977543322 233 568999999999888999999864
No 111
>KOG0825 consensus PHD Zn-finger protein [General function prediction only]
Probab=79.31 E-value=1.6 Score=45.81 Aligned_cols=47 Identities=11% Similarity=0.248 Sum_probs=30.8
Q ss_pred CCCccccccCCCCCCCe----Ec---CCCCccChhHHHHHHhc------CCCCCCCCCCC
Q 018471 296 PGVSKCTLCLSNRQDPT----AT---PCGHVFCWNCIMEWCNE------KPECPLCRAPI 342 (355)
Q Consensus 296 ~~~~~C~iC~~~~~~p~----~~---~CgH~fC~~Ci~~~~~~------~~~CP~Cr~~~ 342 (355)
.+...|.+|...+.+++ .. .|+|-+|+.||..|... +..|+.|..-+
T Consensus 94 a~s~Ss~~C~~E~S~~~ds~~i~P~~~~~~~~CP~Ci~s~~DqL~~~~k~c~H~FC~~Ci 153 (1134)
T KOG0825|consen 94 AESDTSPVCEKEHSPDVDSSNICPVQTHVENQCPNCLKSCNDQLEESEKHTAHYFCEECV 153 (1134)
T ss_pred ccccccchhheecCCcccccCcCchhhhhhhhhhHHHHHHHHHhhccccccccccHHHHh
Confidence 34556666655554421 22 49999999999999752 24678886644
No 112
>KOG4362 consensus Transcriptional regulator BRCA1 [Replication, recombination and repair; Transcription]
Probab=78.69 E-value=0.44 Score=49.50 Aligned_cols=48 Identities=25% Similarity=0.753 Sum_probs=39.0
Q ss_pred CccccccCCCCCCCeEcCCCCccChhHHHHHHh---cCCCCCCCCCCCCCC
Q 018471 298 VSKCTLCLSNRQDPTATPCGHVFCWNCIMEWCN---EKPECPLCRAPITHS 345 (355)
Q Consensus 298 ~~~C~iC~~~~~~p~~~~CgH~fC~~Ci~~~~~---~~~~CP~Cr~~~~~~ 345 (355)
..+|+||......|+.+.|-|.||..|+..-+. ....||+|+..+...
T Consensus 21 ~lEc~ic~~~~~~p~~~kc~~~~l~~~~n~~f~~~~~~~~~~lc~~~~eK~ 71 (684)
T KOG4362|consen 21 ILECPICLEHVKEPSLLKCDHIFLKFCLNKLFESKKGPKQCALCKSDIEKR 71 (684)
T ss_pred hccCCceeEEeeccchhhhhHHHHhhhhhceeeccCccccchhhhhhhhhh
Confidence 578999999999999999999999999866443 345899998766543
No 113
>PRK03564 formate dehydrogenase accessory protein FdhE; Provisional
Probab=78.47 E-value=0.82 Score=43.44 Aligned_cols=45 Identities=22% Similarity=0.473 Sum_probs=34.6
Q ss_pred CCCccccccCCCCCCCeEc---CCC--CccChhHHHHHHhcCCCCCCCCC
Q 018471 296 PGVSKCTLCLSNRQDPTAT---PCG--HVFCWNCIMEWCNEKPECPLCRA 340 (355)
Q Consensus 296 ~~~~~C~iC~~~~~~p~~~---~Cg--H~fC~~Ci~~~~~~~~~CP~Cr~ 340 (355)
+....||+|.+.+...+.. .-| +.+|..|-.+|-.....||.|..
T Consensus 185 ~~~~~CPvCGs~P~~s~v~~~~~~G~RyL~CslC~teW~~~R~~C~~Cg~ 234 (309)
T PRK03564 185 EQRQFCPVCGSMPVSSVVQIGTTQGLRYLHCNLCESEWHVVRVKCSNCEQ 234 (309)
T ss_pred cCCCCCCCCCCcchhheeeccCCCCceEEEcCCCCCcccccCccCCCCCC
Confidence 3578999999987544321 234 56899999999988899999986
No 114
>PF06271 RDD: RDD family; InterPro: IPR010432 This domain contains three highly conserved amino acids: one arginine and two aspartates, hence the name of RDD domain. This region contains two predicted transmembrane regions. The arginine occurs at the N terminus of the first helix and the first aspartate occurs in the middle of this helix. The molecular function of this region is unknown. However this region may be involved in transport of an as yet unknown set of ligands.
Probab=78.33 E-value=7.9 Score=31.28 Aligned_cols=39 Identities=21% Similarity=0.240 Sum_probs=30.6
Q ss_pred HHHHHHHHHHHHhhhcCCCCcccccccceEEecCCCCCC
Q 018471 54 ETKLVGQMLYYVLTTGSGQQTLGEEYCDITQVVGPQRLP 92 (355)
Q Consensus 54 ei~~~~~lly~~lTt~~g~qTlGeEy~~l~~v~~~~~~~ 92 (355)
-+..+.-++|+......++||+|.-.++|.-++.++.++
T Consensus 52 ~~~~~~~~~~~~~~~~~~G~T~Gk~~~~lrvv~~~g~~~ 90 (137)
T PF06271_consen 52 IIFLLVFFYYFIVPWARKGQTLGKRLLGLRVVDKDGNPP 90 (137)
T ss_pred HHHHHHHHHHHHHHHhcCCCCcccccCceEEEecCCCCC
Confidence 344566777778888889999999999999998665443
No 115
>KOG2113 consensus Predicted RNA binding protein, contains KH domain [General function prediction only]
Probab=74.63 E-value=2.4 Score=39.83 Aligned_cols=45 Identities=9% Similarity=-0.109 Sum_probs=36.8
Q ss_pred CCccccccCCCCCCCeEcCCCC-ccChhHHHHHHhcCCCCCCCCCCCC
Q 018471 297 GVSKCTLCLSNRQDPTATPCGH-VFCWNCIMEWCNEKPECPLCRAPIT 343 (355)
Q Consensus 297 ~~~~C~iC~~~~~~p~~~~CgH-~fC~~Ci~~~~~~~~~CP~Cr~~~~ 343 (355)
...+|..|.......+-.+|+| .||..|.. ....+.||.|...+.
T Consensus 342 s~~~~~~~~~~~~st~~~~~~~n~~~~~~a~--~s~~~~~~~c~~~~~ 387 (394)
T KOG2113|consen 342 SSLKGTSAGFGLLSTIWSGGNMNLSPGSLAS--ASASPTSSTCDHNDH 387 (394)
T ss_pred hhcccccccCceeeeEeecCCcccChhhhhh--cccCCccccccccce
Confidence 4678999998877777889999 59999986 556789999977554
No 116
>KOG3161 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=74.12 E-value=1.1 Score=46.04 Aligned_cols=39 Identities=28% Similarity=0.806 Sum_probs=29.6
Q ss_pred CccccccCCCCC----CCeEcCCCCccChhHHHHHHhcCCCCCCCC
Q 018471 298 VSKCTLCLSNRQ----DPTATPCGHVFCWNCIMEWCNEKPECPLCR 339 (355)
Q Consensus 298 ~~~C~iC~~~~~----~p~~~~CgH~fC~~Ci~~~~~~~~~CP~Cr 339 (355)
-..|.||+..+. .|+.+.|||+.|..|+... .+..|| |.
T Consensus 11 ~l~c~ic~n~f~~~~~~Pvsl~cghtic~~c~~~l--yn~scp-~~ 53 (861)
T KOG3161|consen 11 LLLCDICLNLFVVQRLEPVSLQCGHTICGHCVQLL--YNASCP-TK 53 (861)
T ss_pred HhhchHHHHHHHHHhcCcccccccchHHHHHHHhH--hhccCC-CC
Confidence 467899976553 5888999999999999754 345677 53
No 117
>KOG3800 consensus Predicted E3 ubiquitin ligase containing RING finger, subunit of transcription/repair factor TFIIH and CDK-activating kinase assembly factor [Posttranslational modification, protein turnover, chaperones]
Probab=71.26 E-value=2.5 Score=39.34 Aligned_cols=30 Identities=27% Similarity=0.771 Sum_probs=25.1
Q ss_pred CCCCccChhHHHHHHh-cCCCCCCCCCCCCC
Q 018471 315 PCGHVFCWNCIMEWCN-EKPECPLCRAPITH 344 (355)
Q Consensus 315 ~CgH~fC~~Ci~~~~~-~~~~CP~Cr~~~~~ 344 (355)
+|||..|-+|...... ....||-|...+..
T Consensus 22 ~C~H~lCEsCvd~iF~~g~~~CpeC~~iLRk 52 (300)
T KOG3800|consen 22 ECGHRLCESCVDRIFSLGPAQCPECMVILRK 52 (300)
T ss_pred cccchHHHHHHHHHHhcCCCCCCcccchhhh
Confidence 8999999999998775 55689999876654
No 118
>KOG1812 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=70.72 E-value=2 Score=42.25 Aligned_cols=42 Identities=29% Similarity=0.730 Sum_probs=29.8
Q ss_pred CCccccccCCCCC-----CCeEcCCCCccChhHHHHHHhcCCCCCCC
Q 018471 297 GVSKCTLCLSNRQ-----DPTATPCGHVFCWNCIMEWCNEKPECPLC 338 (355)
Q Consensus 297 ~~~~C~iC~~~~~-----~p~~~~CgH~fC~~Ci~~~~~~~~~CP~C 338 (355)
.-..|+.|..... +.+.-.|||-|||.|..+|...+..|..|
T Consensus 305 ~wr~CpkC~~~ie~~~GCnhm~CrC~~~fcy~C~~~~~~~~~~~~~~ 351 (384)
T KOG1812|consen 305 RWRQCPKCKFMIELSEGCNHMTCRCGHQFCYMCGGDWKTHNGECYEC 351 (384)
T ss_pred hcCcCcccceeeeecCCcceEEeeccccchhhcCcchhhCCccccCc
Confidence 3578998876543 22222499999999999998777666555
No 119
>PF04710 Pellino: Pellino; InterPro: IPR006800 Pellino is involved in Toll-like signalling pathways, and associates with the kinase domain of the Pelle Ser/Thr kinase [, , ].; PDB: 3EGB_B 3EGA_A.
Probab=69.86 E-value=1.5 Score=42.67 Aligned_cols=54 Identities=30% Similarity=0.688 Sum_probs=0.0
Q ss_pred CCccccccCCCCC-----------------CC--eEcCCCCccChhHHHHHHhc---------CCCCCCCCCCCCC-CCc
Q 018471 297 GVSKCTLCLSNRQ-----------------DP--TATPCGHVFCWNCIMEWCNE---------KPECPLCRAPITH-SSL 347 (355)
Q Consensus 297 ~~~~C~iC~~~~~-----------------~p--~~~~CgH~fC~~Ci~~~~~~---------~~~CP~Cr~~~~~-~~~ 347 (355)
....||+|...-. .| ...||||+.-.....-|.+- +..||.|-.++.. .-.
T Consensus 327 ~~r~CPlCr~~g~~V~L~mG~E~afyvD~~~pthaF~PCGHv~SekTa~yWs~i~lPhGt~~f~a~CPFCa~~L~g~~g~ 406 (416)
T PF04710_consen 327 RSRTCPLCRQVGPYVPLWMGCEPAFYVDSGPPTHAFNPCGHVCSEKTAKYWSQIPLPHGTHAFHAACPFCATPLDGEQGY 406 (416)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred ccccCCCccccCCceeEeeccccceeecCCCCceeecccccccchhhhhhhhcCCCCCCcccccccCCcccCcccCCCCc
Confidence 4789999976410 12 34589998777777778651 2489999998873 334
Q ss_pred eec
Q 018471 348 VCL 350 (355)
Q Consensus 348 ~~l 350 (355)
++|
T Consensus 407 vrL 409 (416)
T PF04710_consen 407 VRL 409 (416)
T ss_dssp ---
T ss_pred eEE
Confidence 443
No 120
>KOG1815 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=69.46 E-value=4.8 Score=40.40 Aligned_cols=35 Identities=26% Similarity=0.676 Sum_probs=29.5
Q ss_pred CCCccccccCCCCCC-CeEcCCCCccChhHHHHHHh
Q 018471 296 PGVSKCTLCLSNRQD-PTATPCGHVFCWNCIMEWCN 330 (355)
Q Consensus 296 ~~~~~C~iC~~~~~~-p~~~~CgH~fC~~Ci~~~~~ 330 (355)
.....|.+|.+.... ...+.|||.||..|+..++.
T Consensus 68 ~~~~~c~ic~~~~~~~~~~~~c~H~~c~~cw~~yl~ 103 (444)
T KOG1815|consen 68 KGDVQCGICVESYDGEIIGLGCGHPFCPPCWTGYLG 103 (444)
T ss_pred CccccCCcccCCCcchhhhcCCCcHHHHHHHHHHhh
Confidence 456899999998775 66779999999999999875
No 121
>PF12906 RINGv: RING-variant domain; PDB: 2D8S_A 1VYX_A.
Probab=68.83 E-value=3.4 Score=27.69 Aligned_cols=38 Identities=26% Similarity=0.942 Sum_probs=22.6
Q ss_pred ccccCCCCC--CCeEcCCCC-----ccChhHHHHHHh--cCCCCCCC
Q 018471 301 CTLCLSNRQ--DPTATPCGH-----VFCWNCIMEWCN--EKPECPLC 338 (355)
Q Consensus 301 C~iC~~~~~--~p~~~~CgH-----~fC~~Ci~~~~~--~~~~CP~C 338 (355)
|-||++.-. ++...||+- ..+..|+..|+. .+..|+.|
T Consensus 1 CrIC~~~~~~~~~li~pC~C~Gs~~~vH~~CL~~W~~~~~~~~C~~C 47 (47)
T PF12906_consen 1 CRICLEGEEEDEPLISPCRCKGSMKYVHRSCLERWIRESGNRKCEIC 47 (47)
T ss_dssp ETTTTEE-SSSS-EE-SSS-SSCCGSEECCHHHHHHHHHT-SB-TTT
T ss_pred CeEeCCcCCCCCceecccccCCCcchhHHHHHHHHHHhcCCCcCCCC
Confidence 557776433 256677642 358899999997 44678887
No 122
>KOG0309 consensus Conserved WD40 repeat-containing protein [Function unknown]
Probab=68.56 E-value=2.6 Score=44.12 Aligned_cols=32 Identities=34% Similarity=0.750 Sum_probs=25.6
Q ss_pred eEcCCCCccChhHHHHHHhcCCCCCC-CCCCCC
Q 018471 312 TATPCGHVFCWNCIMEWCNEKPECPL-CRAPIT 343 (355)
Q Consensus 312 ~~~~CgH~fC~~Ci~~~~~~~~~CP~-Cr~~~~ 343 (355)
++..|||+.+.+|..+|.+..-.||. |+..+.
T Consensus 1044 ~Cg~C~Hv~H~sc~~eWf~~gd~CpsGCGC~C~ 1076 (1081)
T KOG0309|consen 1044 FCGTCGHVGHTSCMMEWFRTGDVCPSGCGCHCL 1076 (1081)
T ss_pred hhccccccccHHHHHHHHhcCCcCCCCCCcCch
Confidence 45679999999999999998888975 544443
No 123
>KOG2068 consensus MOT2 transcription factor [Transcription]
Probab=68.29 E-value=4 Score=38.82 Aligned_cols=47 Identities=28% Similarity=0.728 Sum_probs=36.9
Q ss_pred CCccccccCCCCC--CCeE--cCCCCccChhHHHHHHhcCCCCCCCCCCCC
Q 018471 297 GVSKCTLCLSNRQ--DPTA--TPCGHVFCWNCIMEWCNEKPECPLCRAPIT 343 (355)
Q Consensus 297 ~~~~C~iC~~~~~--~p~~--~~CgH~fC~~Ci~~~~~~~~~CP~Cr~~~~ 343 (355)
....|++|-+... +... .|||+..|+.|+...+..+..||.||++..
T Consensus 248 v~~s~p~~~~~~~~~d~~~lP~~~~~~~~l~~~~t~~~~~~~~~~~rk~~~ 298 (327)
T KOG2068|consen 248 VPPSCPICYEDLDLTDSNFLPCPCGFRLCLFCHKTISDGDGRCPGCRKPYE 298 (327)
T ss_pred cCCCCCCCCCcccccccccccccccccchhhhhhcccccCCCCCccCCccc
Confidence 4578999998663 2223 368999999999998888999999997554
No 124
>KOG1812 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=67.40 E-value=3 Score=41.05 Aligned_cols=34 Identities=24% Similarity=0.753 Sum_probs=25.7
Q ss_pred CCccccccC-CCCCC---CeEcCCCCccChhHHHHHHh
Q 018471 297 GVSKCTLCL-SNRQD---PTATPCGHVFCWNCIMEWCN 330 (355)
Q Consensus 297 ~~~~C~iC~-~~~~~---p~~~~CgH~fC~~Ci~~~~~ 330 (355)
....|.||. +.+.. -....|+|.||..|++.++.
T Consensus 145 ~~~~C~iC~~e~~~~~~~f~~~~C~H~fC~~C~k~~ie 182 (384)
T KOG1812|consen 145 PKEECGICFVEDPEAEDMFSVLKCGHRFCKDCVKQHIE 182 (384)
T ss_pred ccccCccCccccccHhhhHHHhcccchhhhHHhHHHhh
Confidence 467899999 43332 13457999999999998876
No 125
>KOG0269 consensus WD40 repeat-containing protein [Function unknown]
Probab=65.94 E-value=5.7 Score=41.76 Aligned_cols=51 Identities=24% Similarity=0.372 Sum_probs=37.5
Q ss_pred CCccccccCCCCCCC--eEcCCCCccChhHHHHHHhcCCCCCC--CCCCCCCCCc
Q 018471 297 GVSKCTLCLSNRQDP--TATPCGHVFCWNCIMEWCNEKPECPL--CRAPITHSSL 347 (355)
Q Consensus 297 ~~~~C~iC~~~~~~p--~~~~CgH~fC~~Ci~~~~~~~~~CP~--Cr~~~~~~~~ 347 (355)
..-.|.+|.-....- .+-.|||.-+.+|+..|......||. |........+
T Consensus 778 a~~~CtVC~~vi~G~~~~c~~C~H~gH~sh~~sw~~~~s~ca~~~C~~~c~~~~~ 832 (839)
T KOG0269|consen 778 ASAKCTVCDLVIRGVDVWCQVCGHGGHDSHLKSWFFKASPCAKSICPHLCHYSSF 832 (839)
T ss_pred hhcCceeecceeeeeEeecccccccccHHHHHHHHhcCCCCccccCCcccccccc
Confidence 345788887665532 23469999999999999998888987 7776655443
No 126
>COG5183 SSM4 Protein involved in mRNA turnover and stability [RNA processing and modification]
Probab=65.84 E-value=5.2 Score=42.37 Aligned_cols=51 Identities=25% Similarity=0.750 Sum_probs=38.0
Q ss_pred CCccccccCCC--CCCCeEcCCCCc-----cChhHHHHHHh--cCCCCCCCCCCCCCCCc
Q 018471 297 GVSKCTLCLSN--RQDPTATPCGHV-----FCWNCIMEWCN--EKPECPLCRAPITHSSL 347 (355)
Q Consensus 297 ~~~~C~iC~~~--~~~p~~~~CgH~-----fC~~Ci~~~~~--~~~~CP~Cr~~~~~~~~ 347 (355)
++..|-||..+ ..+|..-||... .+..|+.+|+. .+.+|-.|..++.-+++
T Consensus 11 d~~~CRICr~e~~~d~pLfhPCKC~GSIkYiH~eCL~eW~~~s~~~kCdiChy~~~Fk~I 70 (1175)
T COG5183 11 DKRSCRICRTEDIRDDPLFHPCKCSGSIKYIHRECLMEWMECSGTKKCDICHYEYKFKDI 70 (1175)
T ss_pred cchhceeecCCCCCCCcCcccccccchhHHHHHHHHHHHHhcCCCcceeeecceeeeeee
Confidence 45789998764 346777787653 57899999986 45689999988765543
No 127
>COG0068 HypF Hydrogenase maturation factor [Posttranslational modification, protein turnover, chaperones]
Probab=63.57 E-value=4.1 Score=42.70 Aligned_cols=49 Identities=33% Similarity=0.743 Sum_probs=36.5
Q ss_pred CCCCCccccccCCCCCCC----------eEcCCCCcc--------------------ChhHHHHHHh--------cCCCC
Q 018471 294 AAPGVSKCTLCLSNRQDP----------TATPCGHVF--------------------CWNCIMEWCN--------EKPEC 335 (355)
Q Consensus 294 ~~~~~~~C~iC~~~~~~p----------~~~~CgH~f--------------------C~~Ci~~~~~--------~~~~C 335 (355)
..++--.|.-|++++.+| .+|.||..| |..|-+++.. +...|
T Consensus 97 I~pD~a~C~~Cl~Ei~dp~~rrY~YPF~~CT~CGPRfTIi~alPYDR~nTsM~~F~lC~~C~~EY~dP~nRRfHAQp~aC 176 (750)
T COG0068 97 IPPDAATCEDCLEEIFDPNSRRYLYPFINCTNCGPRFTIIEALPYDRENTSMADFPLCPFCDKEYKDPLNRRFHAQPIAC 176 (750)
T ss_pred cCCchhhhHHHHHHhcCCCCcceeccccccCCCCcceeeeccCCCCcccCccccCcCCHHHHHHhcCccccccccccccC
Confidence 456678999999887765 367888877 9999988754 22479
Q ss_pred CCCCCCC
Q 018471 336 PLCRAPI 342 (355)
Q Consensus 336 P~Cr~~~ 342 (355)
|.|.-.+
T Consensus 177 p~CGP~~ 183 (750)
T COG0068 177 PKCGPHL 183 (750)
T ss_pred cccCCCe
Confidence 9996543
No 128
>COG4696 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=61.07 E-value=27 Score=29.34 Aligned_cols=64 Identities=22% Similarity=0.303 Sum_probs=39.5
Q ss_pred CCCCCCCCCchh--hhhhhhhHHHHHHH-------------HHHHHHHHHHhcchh-----HHHhcHHHHHHHHHHHHHH
Q 018471 6 TRRFPPAAQPEI--MRAAEKDEQYASFI-------------YDACRDAFRQLFGTR-----VAVAYQSETKLVGQMLYYV 65 (355)
Q Consensus 6 ~~~fp~A~~p~I--lra~QkD~~~~~~L-------------~~~l~~~~~~~~g~r-----~~~~~~~ei~~~~~lly~~ 65 (355)
+.-=|.|-+|+- +||.-||||+...+ -+++..+++.-.+-- .-...-+.+.+++++|||.
T Consensus 27 T~E~Pra~~pe~a~~Ra~fkvEEivEf~yaas~g~q~ftqav~~lH~a~dqAA~kv~~k~h~e~dL~gqvdalaDlLYfT 106 (180)
T COG4696 27 TQERPRAPPPEEARLRAGFKVEEIVEFLYAASPGEQDFTQAVEILHQAVDQAANKVLSKGHAEQDLIGQVDALADLLYFT 106 (180)
T ss_pred CccCCCCCChhHhHHhccchHHHHHHHHHhcCcchhHHHHHHHHHHHHHHHHHHHHHhcCccccchhhHHHHHHHHHHHh
Confidence 334577777775 58999999998777 333333333222111 1124556789999999996
Q ss_pred hhhc
Q 018471 66 LTTG 69 (355)
Q Consensus 66 lTt~ 69 (355)
+-.+
T Consensus 107 YGsl 110 (180)
T COG4696 107 YGSL 110 (180)
T ss_pred hhhH
Confidence 6443
No 129
>PF04088 Peroxin-13_N: Peroxin 13, N-terminal region; InterPro: IPR007223 Peroxin-13 is a component of the peroxisomal translocation machinery with Peroxin-14 and Peroxin-17. Both termini of Peroxin-13 are oriented to the cytosol. It is required for peroxisomal association of peroxin-14 []. The proteins also contain an SH3 domain (IPR001452 from INTERPRO).; GO: 0016560 protein import into peroxisome matrix, docking, 0005777 peroxisome, 0016021 integral to membrane
Probab=59.42 E-value=39 Score=28.89 Aligned_cols=26 Identities=19% Similarity=0.365 Sum_probs=19.9
Q ss_pred CCCchhHHHHHHHHHhhHHHHHHHHH
Q 018471 91 LPPTPARRALFIVYQTAVPYIAERIR 116 (355)
Q Consensus 91 ~~ps~~rr~~~vll~~~~pyl~~r~~ 116 (355)
.-||++--++|++..+++||++.|+.
T Consensus 132 ~~~s~~PlllF~~~v~G~PyLi~Kli 157 (158)
T PF04088_consen 132 PKPSSKPLLLFLAAVFGLPYLIWKLI 157 (158)
T ss_pred CCCCcccHHHHHHHHHHHHHHHHHHh
Confidence 34555555788888899999999975
No 130
>PF06906 DUF1272: Protein of unknown function (DUF1272); InterPro: IPR010696 This family consists of several hypothetical bacterial proteins of around 80 residues in length. This family contains a number of conserved cysteine residues and its function is unknown.
Probab=59.27 E-value=12 Score=25.95 Aligned_cols=44 Identities=23% Similarity=0.581 Sum_probs=28.6
Q ss_pred cccccCCCCCCC--eEcCCCC--ccChhHHHHHHhcCCCCCCCCCCCCCC
Q 018471 300 KCTLCLSNRQDP--TATPCGH--VFCWNCIMEWCNEKPECPLCRAPITHS 345 (355)
Q Consensus 300 ~C~iC~~~~~~p--~~~~CgH--~fC~~Ci~~~~~~~~~CP~Cr~~~~~~ 345 (355)
.|--|-..+... -+.-|.+ .||..|....+ +..||-|+..+...
T Consensus 7 nCE~C~~dLp~~s~~A~ICSfECTFC~~C~e~~l--~~~CPNCgGelv~R 54 (57)
T PF06906_consen 7 NCECCDKDLPPDSPEAYICSFECTFCADCAETML--NGVCPNCGGELVRR 54 (57)
T ss_pred CccccCCCCCCCCCcceEEeEeCcccHHHHHHHh--cCcCcCCCCccccC
Confidence 455565544322 2334553 69999998765 57899998877654
No 131
>KOG0883 consensus Cyclophilin type, U box-containing peptidyl-prolyl cis-trans isomerase [Posttranslational modification, protein turnover, chaperones]
Probab=58.49 E-value=8.9 Score=37.31 Aligned_cols=55 Identities=24% Similarity=0.438 Sum_probs=49.3
Q ss_pred CCccccccCCCCCCCeEcCCCCccChhHHHHHHhcCCCCCCCCCCCCCCCceecc
Q 018471 297 GVSKCTLCLSNRQDPTATPCGHVFCWNCIMEWCNEKPECPLCRAPITHSSLVCLY 351 (355)
Q Consensus 297 ~~~~C~iC~~~~~~p~~~~CgH~fC~~Ci~~~~~~~~~CP~Cr~~~~~~~~~~l~ 351 (355)
+-..|.+-+-++..|+++.-|.+|=..-|.+|++....=|.-.+++..+++++|-
T Consensus 39 P~~hC~lt~~Pfe~PvC~~dg~vFd~~~Ivp~lkk~g~nP~tG~kl~~~dLIkL~ 93 (518)
T KOG0883|consen 39 PFNHCSLTMLPFEDPVCTVDGTVFDLTAIVPWLKKHGTNPITGQKLDGKDLIKLK 93 (518)
T ss_pred ChhhceeccccccCcccccCCcEEeeehhhHHHHHcCCCCCCCCccccccceeee
Confidence 4568889999999999999999999999999999888888889999989988874
No 132
>KOG4718 consensus Non-SMC (structural maintenance of chromosomes) element 1 protein (NSE1) [Chromatin structure and dynamics]
Probab=58.27 E-value=5.1 Score=35.67 Aligned_cols=47 Identities=21% Similarity=0.531 Sum_probs=36.9
Q ss_pred CCccccccCCCCCCC-eEcCCCCccChhHHHHHHhcCCCCCCCCCCCC
Q 018471 297 GVSKCTLCLSNRQDP-TATPCGHVFCWNCIMEWCNEKPECPLCRAPIT 343 (355)
Q Consensus 297 ~~~~C~iC~~~~~~p-~~~~CgH~fC~~Ci~~~~~~~~~CP~Cr~~~~ 343 (355)
.-..|.+|....... .+-.||-.+...|+..++++.+.||.|+.-.+
T Consensus 180 nlk~Cn~Ch~LvIqg~rCg~c~i~~h~~c~qty~q~~~~cphc~d~w~ 227 (235)
T KOG4718|consen 180 NLKNCNLCHCLVIQGIRCGSCNIQYHRGCIQTYLQRRDICPHCGDLWT 227 (235)
T ss_pred HHHHHhHhHHHhheeeccCcccchhhhHHHHHHhcccCcCCchhcccC
Confidence 346899999876544 35578888899999999999999999965433
No 133
>KOG3799 consensus Rab3 effector RIM1 and related proteins, contain Rab3a binding domain [Intracellular trafficking, secretion, and vesicular transport]
Probab=57.69 E-value=3.9 Score=33.67 Aligned_cols=29 Identities=28% Similarity=0.689 Sum_probs=19.8
Q ss_pred CCCccccccCCCCCCCeEcCCCCccChhHHHHH
Q 018471 296 PGVSKCTLCLSNRQDPTATPCGHVFCWNCIMEW 328 (355)
Q Consensus 296 ~~~~~C~iC~~~~~~p~~~~CgH~fC~~Ci~~~ 328 (355)
..+..|.||+.. ..+-.|||. |.+|-.+.
T Consensus 63 ~ddatC~IC~KT---KFADG~GH~-C~YCq~r~ 91 (169)
T KOG3799|consen 63 GDDATCGICHKT---KFADGCGHN-CSYCQTRF 91 (169)
T ss_pred CcCcchhhhhhc---ccccccCcc-cchhhhhH
Confidence 356789999874 334579994 67776554
No 134
>TIGR00622 ssl1 transcription factor ssl1. This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University).
Probab=56.88 E-value=12 Score=29.96 Aligned_cols=42 Identities=26% Similarity=0.533 Sum_probs=30.7
Q ss_pred CccccccCCCCCCC--------------eEcCCCCccChhHHHHHHhcCCCCCCCC
Q 018471 298 VSKCTLCLSNRQDP--------------TATPCGHVFCWNCIMEWCNEKPECPLCR 339 (355)
Q Consensus 298 ~~~C~iC~~~~~~p--------------~~~~CgH~fC~~Ci~~~~~~~~~CP~Cr 339 (355)
...|-.|...+..+ ....|++.||.+|=.-+...-..||-|.
T Consensus 55 ~~~C~~C~~~f~~~~~~~~~~~~~~~~y~C~~C~~~FC~dCD~fiHe~Lh~CPGC~ 110 (112)
T TIGR00622 55 SRFCFGCQGPFPKPPVSPFDELKDSHRYVCAVCKNVFCVDCDVFVHESLHCCPGCI 110 (112)
T ss_pred CCcccCcCCCCCCcccccccccccccceeCCCCCCccccccchhhhhhccCCcCCC
Confidence 35688898876543 1457999999999665555557899985
No 135
>PF10235 Cript: Microtubule-associated protein CRIPT; InterPro: IPR019367 The CRIPT protein is a cytoskeletal protein involved in microtubule production. This C-terminal domain is essential for binding to the PDZ3 domain of the SAP90 protein, one of a super-family of PDZ-containing proteins that play an important role in coupling the membrane ion channels with their signalling partners [].
Probab=55.74 E-value=8 Score=29.76 Aligned_cols=37 Identities=32% Similarity=0.847 Sum_probs=29.1
Q ss_pred CccccccCCCCCCCeEcCCCCccChhHHHHHHhcCCCCCCCCCCCC
Q 018471 298 VSKCTLCLSNRQDPTATPCGHVFCWNCIMEWCNEKPECPLCRAPIT 343 (355)
Q Consensus 298 ~~~C~iC~~~~~~p~~~~CgH~fC~~Ci~~~~~~~~~CP~Cr~~~~ 343 (355)
...|-+|-.....+ ||.||..|.. .+..|.+|.+.+.
T Consensus 44 ~~~C~~CK~~v~q~-----g~~YCq~CAY----kkGiCamCGKki~ 80 (90)
T PF10235_consen 44 SSKCKICKTKVHQP-----GAKYCQTCAY----KKGICAMCGKKIL 80 (90)
T ss_pred CccccccccccccC-----CCccChhhhc----ccCcccccCCeec
Confidence 56899998876643 7889999953 5578999998774
No 136
>PF07975 C1_4: TFIIH C1-like domain; InterPro: IPR004595 All proteins in this domain for which functions are known are components of the TFIIH complex which is involved in the initiation of transcription and nucleotide excision repair. It includes the yeast transcription factor Ssl1 (Suppressor of stem-loop protein 1) that is essential for translation initiation and affects UV resistance. The C-terminal region is essential for transcription activity. This regions binds three zinc atoms through two independent domain. The first contains a C4 zinc finger motif, whereas the second is characterised by a CX(2)CX(2-4)FCADCD motif. The solution structure of the second C-terminal domain revealed homology with the regulatory domain of protein kinase C [].; GO: 0006281 DNA repair, 0005634 nucleus; PDB: 1Z60_A.
Probab=54.98 E-value=6.9 Score=26.78 Aligned_cols=26 Identities=27% Similarity=0.710 Sum_probs=13.7
Q ss_pred cCCCCccChhHHHHHHhcCCCCCCCC
Q 018471 314 TPCGHVFCWNCIMEWCNEKPECPLCR 339 (355)
Q Consensus 314 ~~CgH~fC~~Ci~~~~~~~~~CP~Cr 339 (355)
..|++.||.+|=.=.-..--.||-|.
T Consensus 25 ~~C~~~FC~dCD~fiHE~LH~CPGC~ 50 (51)
T PF07975_consen 25 PKCKNHFCIDCDVFIHETLHNCPGCE 50 (51)
T ss_dssp TTTT--B-HHHHHTTTTTS-SSSTT-
T ss_pred CCCCCccccCcChhhhccccCCcCCC
Confidence 36899999999432222335899883
No 137
>PRK14714 DNA polymerase II large subunit; Provisional
Probab=54.44 E-value=6.8 Score=43.74 Aligned_cols=48 Identities=27% Similarity=0.644 Sum_probs=33.2
Q ss_pred CCccccccCCCCCCCeEcCCCCc-----cChhHHHHHHhc---CCCCCCCCCCCCC
Q 018471 297 GVSKCTLCLSNRQDPTATPCGHV-----FCWNCIMEWCNE---KPECPLCRAPITH 344 (355)
Q Consensus 297 ~~~~C~iC~~~~~~p~~~~CgH~-----fC~~Ci~~~~~~---~~~CP~Cr~~~~~ 344 (355)
..+.|+-|........|..||.. .|..|-...-.. ...||.|..++..
T Consensus 666 ~~rkCPkCG~~t~~~fCP~CGs~te~vy~CPsCGaev~~des~a~~CP~CGtplv~ 721 (1337)
T PRK14714 666 GRRRCPSCGTETYENRCPDCGTHTEPVYVCPDCGAEVPPDESGRVECPRCDVELTP 721 (1337)
T ss_pred EEEECCCCCCccccccCcccCCcCCCceeCccCCCccCCCccccccCCCCCCcccc
Confidence 46899999987655677779865 488886542211 2379999877654
No 138
>KOG0824 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=52.47 E-value=4 Score=38.25 Aligned_cols=48 Identities=29% Similarity=0.656 Sum_probs=38.4
Q ss_pred CCCccccccCCCCCCCeEc-CCCCccChhHHHHHHhcCCCCCCCCCCCC
Q 018471 296 PGVSKCTLCLSNRQDPTAT-PCGHVFCWNCIMEWCNEKPECPLCRAPIT 343 (355)
Q Consensus 296 ~~~~~C~iC~~~~~~p~~~-~CgH~fC~~Ci~~~~~~~~~CP~Cr~~~~ 343 (355)
.....|.+|.....-|... .|+|-||+.|...|.....-||.|+....
T Consensus 103 ~~~~~~~~~~g~l~vpt~~qg~w~qf~~~~p~~~~~~~~~~~d~~~~~~ 151 (324)
T KOG0824|consen 103 QDHDICYICYGKLTVPTRIQGCWHQFCYVCPKSNFAMGNDCPDCRGKIS 151 (324)
T ss_pred CCccceeeeeeeEEecccccCceeeeeecCCchhhhhhhccchhhcCcC
Confidence 3466788998877766554 59999999999999888888999877554
No 139
>PF15616 TerY-C: TerY-C metal binding domain
Probab=52.28 E-value=6 Score=32.71 Aligned_cols=43 Identities=23% Similarity=0.592 Sum_probs=31.5
Q ss_pred CCCccccccCCCCCCCeEcCCCCccChhHHHHHHhcCCCCCCCCCCCCC
Q 018471 296 PGVSKCTLCLSNRQDPTATPCGHVFCWNCIMEWCNEKPECPLCRAPITH 344 (355)
Q Consensus 296 ~~~~~C~iC~~~~~~p~~~~CgH~fC~~Ci~~~~~~~~~CP~Cr~~~~~ 344 (355)
.....||-|....--.++ .||+++|+.= .....||-|......
T Consensus 75 ~g~PgCP~CGn~~~fa~C-~CGkl~Ci~g-----~~~~~CPwCg~~g~~ 117 (131)
T PF15616_consen 75 IGAPGCPHCGNQYAFAVC-GCGKLFCIDG-----EGEVTCPWCGNEGSF 117 (131)
T ss_pred cCCCCCCCCcChhcEEEe-cCCCEEEeCC-----CCCEECCCCCCeeee
Confidence 345799999887554444 8999999854 245789999887654
No 140
>PF10497 zf-4CXXC_R1: Zinc-finger domain of monoamine-oxidase A repressor R1; InterPro: IPR018866 R1 is a transcription factor repressor that inhibits monoamine oxidase A gene expression. This domain is a four-CXXC zinc finger putative DNA-binding domain found at the C-terminal end of R1. The domain carries 12 cysteines of which four pairs are of the CXXC type [].
Probab=51.61 E-value=11 Score=29.86 Aligned_cols=25 Identities=28% Similarity=0.670 Sum_probs=18.6
Q ss_pred CCccChhHHHHHHh---------cCCCCCCCCCC
Q 018471 317 GHVFCWNCIMEWCN---------EKPECPLCRAP 341 (355)
Q Consensus 317 gH~fC~~Ci~~~~~---------~~~~CP~Cr~~ 341 (355)
.-.||..||..+.. .+..||.||.-
T Consensus 37 ~~~fC~~CL~~ryge~~~ev~~~~~W~CP~Crgi 70 (105)
T PF10497_consen 37 RGKFCGGCLRNRYGENVEEVLEDPNWKCPKCRGI 70 (105)
T ss_pred cceehHhHHHHHHhhhHHHHhcCCceECCCCCCe
Confidence 66799999977653 23479999873
No 141
>COG3058 FdhE Uncharacterized protein involved in formate dehydrogenase formation [Posttranslational modification, protein turnover, chaperones]
Probab=49.81 E-value=10 Score=35.27 Aligned_cols=45 Identities=22% Similarity=0.498 Sum_probs=33.0
Q ss_pred CCccccccCCCCCCCeEc----CCC--CccChhHHHHHHhcCCCCCCCCCC
Q 018471 297 GVSKCTLCLSNRQDPTAT----PCG--HVFCWNCIMEWCNEKPECPLCRAP 341 (355)
Q Consensus 297 ~~~~C~iC~~~~~~p~~~----~Cg--H~fC~~Ci~~~~~~~~~CP~Cr~~ 341 (355)
...-||+|.+.+...++. .-| ..-|.-|...|.....+|.-|.+.
T Consensus 184 ~~~~CPvCGS~PvaSmV~~g~~~~GlRYL~CslC~teW~~VR~KC~nC~~t 234 (308)
T COG3058 184 SRQYCPVCGSMPVASMVQIGETEQGLRYLHCSLCETEWHYVRVKCSNCEQS 234 (308)
T ss_pred ccccCCCcCCCCcceeeeecCccccchhhhhhhHHHHHHHHHHHhcccccc
Confidence 456899999987654432 123 346999999999888888888653
No 142
>KOG0827 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=48.61 E-value=1.3 Score=42.90 Aligned_cols=48 Identities=23% Similarity=0.626 Sum_probs=39.4
Q ss_pred CccccccCCCCCC----CeEcCCCCccChhHHHHHHhcCCCCCCCCCCCCCC
Q 018471 298 VSKCTLCLSNRQD----PTATPCGHVFCWNCIMEWCNEKPECPLCRAPITHS 345 (355)
Q Consensus 298 ~~~C~iC~~~~~~----p~~~~CgH~fC~~Ci~~~~~~~~~CP~Cr~~~~~~ 345 (355)
...|+||.+.++. -..+.|||.+...|+..|+.....||.|+..++..
T Consensus 196 v~sl~I~~~slK~~y~k~~~~~~g~~~~~~kL~k~L~~~~kl~~~~rel~~~ 247 (465)
T KOG0827|consen 196 VGSLSICFESLKQNYDKISAIVCGHIYHHGKLSKWLATKRKLPSCRRELPKN 247 (465)
T ss_pred HhhhHhhHHHHHHHHHHHHHHhhcccchhhHHHHHHHHHHHhHHHHhhhhhh
Confidence 4578999877653 34678999999999999998888999999887643
No 143
>PF04710 Pellino: Pellino; InterPro: IPR006800 Pellino is involved in Toll-like signalling pathways, and associates with the kinase domain of the Pelle Ser/Thr kinase [, , ].; PDB: 3EGB_B 3EGA_A.
Probab=47.83 E-value=6.1 Score=38.54 Aligned_cols=47 Identities=28% Similarity=0.519 Sum_probs=0.0
Q ss_pred CCccccccCCCCCC-------------C-eEcCCCCccChhHHHHHHh---cCCCCCCCCCCCC
Q 018471 297 GVSKCTLCLSNRQD-------------P-TATPCGHVFCWNCIMEWCN---EKPECPLCRAPIT 343 (355)
Q Consensus 297 ~~~~C~iC~~~~~~-------------p-~~~~CgH~fC~~Ci~~~~~---~~~~CP~Cr~~~~ 343 (355)
...+||+=+..+.- | +-+.||||+.+.=.-.-.. ...+||+|+..-+
T Consensus 276 ~rpQCPVglnTL~fp~~~~~~~~~~~qP~VYl~CGHVhG~h~Wg~~~~~~~~~r~CPlCr~~g~ 339 (416)
T PF04710_consen 276 GRPQCPVGLNTLVFPSKSRKDVPDERQPWVYLNCGHVHGYHNWGQDSDRDPRSRTCPLCRQVGP 339 (416)
T ss_dssp ----------------------------------------------------------------
T ss_pred cCCCCCcCCCccccccccccccccccCceeeccccceeeecccccccccccccccCCCccccCC
Confidence 45678876554332 2 3467999988754322111 2468999987544
No 144
>smart00064 FYVE Protein present in Fab1, YOTB, Vac1, and EEA1. The FYVE zinc finger is named after four proteins where it was first found: Fab1, YOTB/ZK632.12, Vac1, and EEA1. The FYVE finger has been shown to bind two Zn2+ ions. The FYVE finger has eight potential zinc coordinating cysteine positions. The FYVE finger is structurally related to the PF13240 zinc_ribbon_2: zinc-ribbon domain
Probab=47.28 E-value=3.5 Score=23.24 Aligned_cols=7 Identities=43% Similarity=1.108 Sum_probs=3.0
Q ss_pred CCCCCCC
Q 018471 334 ECPLCRA 340 (355)
Q Consensus 334 ~CP~Cr~ 340 (355)
-||.|..
T Consensus 15 fC~~CG~ 21 (23)
T PF13240_consen 15 FCPNCGT 21 (23)
T ss_pred chhhhCC
Confidence 3444443
No 146
>TIGR00143 hypF [NiFe] hydrogenase maturation protein HypF. A previously described regulatory effect of HypF mutatation is attributable to loss of activity of a regulatory hydrogenase. A zinc finger-like region CXXCX(18)CXXCX(24)CXXCX(18)CXXC region further supported the regulatory hypothesis. However, more recent work (PUBMED:11375153) shows the direct effect is on the activity of expressed hydrogenases with nickel/iron centers, rather than on expression.
Probab=46.41 E-value=9.2 Score=40.81 Aligned_cols=49 Identities=31% Similarity=0.735 Sum_probs=35.5
Q ss_pred CCCCCccccccCCCCCCC----------eEcCCCCcc--------------------ChhHHHHHHhc--------CCCC
Q 018471 294 AAPGVSKCTLCLSNRQDP----------TATPCGHVF--------------------CWNCIMEWCNE--------KPEC 335 (355)
Q Consensus 294 ~~~~~~~C~iC~~~~~~p----------~~~~CgH~f--------------------C~~Ci~~~~~~--------~~~C 335 (355)
...+-..|.-|+.++.+| .+|.||..| |..|..++... -..|
T Consensus 64 ippD~a~C~~Cl~E~~dp~~Rry~YpF~nCt~CGPr~~i~~~lpydr~~t~m~~f~~C~~C~~ey~~p~~rr~h~~~~~C 143 (711)
T TIGR00143 64 IPADVATCSDCLEEMLDKNDRRYLYPFISCTHCGPRFTIIEALPYDRENTSMADFPLCPDCAKEYKDPLDRRFHAQPIAC 143 (711)
T ss_pred cCCchhhHHHHHHHhcCCCcccccCCcccccCCCCCeEEeecCCCCCCCcCCCCCcCCHHHHHHhcCCccccCCCCCccC
Confidence 345677899998887765 266788766 99999987542 1389
Q ss_pred CCCCCCC
Q 018471 336 PLCRAPI 342 (355)
Q Consensus 336 P~Cr~~~ 342 (355)
|.|.-.+
T Consensus 144 ~~Cgp~l 150 (711)
T TIGR00143 144 PRCGPQL 150 (711)
T ss_pred CCCCcEE
Confidence 9997655
No 147
>KOG2807 consensus RNA polymerase II transcription initiation/nucleotide excision repair factor TFIIH, subunit SSL1 [Transcription; Replication, recombination and repair]
Probab=45.65 E-value=15 Score=34.96 Aligned_cols=43 Identities=26% Similarity=0.634 Sum_probs=28.8
Q ss_pred CCccccccCCCCCCC---eEcCCCCccChhHHHHHHhcCCCCCCCC
Q 018471 297 GVSKCTLCLSNRQDP---TATPCGHVFCWNCIMEWCNEKPECPLCR 339 (355)
Q Consensus 297 ~~~~C~iC~~~~~~p---~~~~CgH~fC~~Ci~~~~~~~~~CP~Cr 339 (355)
.+..|-.|.+..... .+-.|.++||.+|=.-....-..||-|.
T Consensus 329 ~~~~Cf~C~~~~~~~~~y~C~~Ck~~FCldCDv~iHesLh~CpgCe 374 (378)
T KOG2807|consen 329 GSRFCFACQGELLSSGRYRCESCKNVFCLDCDVFIHESLHNCPGCE 374 (378)
T ss_pred CCcceeeeccccCCCCcEEchhccceeeccchHHHHhhhhcCCCcC
Confidence 445588886554432 3457999999999543333446899996
No 148
>PF07191 zinc-ribbons_6: zinc-ribbons; InterPro: IPR010807 This family consists of several short, hypothetical bacterial proteins of around 70 residues in length. Members of this family 8 highly conserved cysteine residues. The function of the family is unknown.; PDB: 2JRP_A 2JNE_A.
Probab=45.57 E-value=1.3 Score=32.42 Aligned_cols=40 Identities=25% Similarity=0.685 Sum_probs=19.4
Q ss_pred ccccccCCCCCCCeEcCCCCccChhHHHHHHhcCCCCCCCCCCCC
Q 018471 299 SKCTLCLSNRQDPTATPCGHVFCWNCIMEWCNEKPECPLCRAPIT 343 (355)
Q Consensus 299 ~~C~iC~~~~~~p~~~~CgH~fC~~Ci~~~~~~~~~CP~Cr~~~~ 343 (355)
..||.|..++.. .=|+.+|..|-..+ .....||-|.+++.
T Consensus 2 ~~CP~C~~~L~~----~~~~~~C~~C~~~~-~~~a~CPdC~~~Le 41 (70)
T PF07191_consen 2 NTCPKCQQELEW----QGGHYHCEACQKDY-KKEAFCPDCGQPLE 41 (70)
T ss_dssp -B-SSS-SBEEE----ETTEEEETTT--EE-EEEEE-TTT-SB-E
T ss_pred CcCCCCCCccEE----eCCEEECccccccc-eecccCCCcccHHH
Confidence 468888776432 12677777776532 23457888877664
No 149
>cd00065 FYVE FYVE domain; Zinc-binding domain; targets proteins to membrane lipids via interaction with phosphatidylinositol-3-phosphate, PI3P; present in Fab1, YOTB, Vac1, and EEA1;
Probab=45.53 E-value=16 Score=25.01 Aligned_cols=31 Identities=26% Similarity=0.540 Sum_probs=22.2
Q ss_pred ccccccCCCCCC----CeEcCCCCccChhHHHHHH
Q 018471 299 SKCTLCLSNRQD----PTATPCGHVFCWNCIMEWC 329 (355)
Q Consensus 299 ~~C~iC~~~~~~----p~~~~CgH~fC~~Ci~~~~ 329 (355)
..|..|...+.. .....||++||..|.....
T Consensus 3 ~~C~~C~~~F~~~~rk~~Cr~Cg~~~C~~C~~~~~ 37 (57)
T cd00065 3 SSCMGCGKPFTLTRRRHHCRNCGRIFCSKCSSNRI 37 (57)
T ss_pred CcCcccCccccCCccccccCcCcCCcChHHcCCee
Confidence 468888765542 3455799999999986543
No 150
>KOG3053 consensus Uncharacterized conserved protein [Function unknown]
Probab=45.05 E-value=12 Score=34.45 Aligned_cols=49 Identities=24% Similarity=0.651 Sum_probs=33.4
Q ss_pred CCCCccccccCCCCCCCeE----cCCC-----CccChhHHHHHHhcC--------CCCCCCCCCCC
Q 018471 295 APGVSKCTLCLSNRQDPTA----TPCG-----HVFCWNCIMEWCNEK--------PECPLCRAPIT 343 (355)
Q Consensus 295 ~~~~~~C~iC~~~~~~p~~----~~Cg-----H~fC~~Ci~~~~~~~--------~~CP~Cr~~~~ 343 (355)
.+.+..|-||...-++... -||. |=.+..|+..|..++ ..||.|+.+..
T Consensus 17 ~e~eR~CWiCF~TdeDn~~a~WV~PCrCRGt~KWVHqsCL~rWiDEK~~~n~~q~V~C~QCqTEYi 82 (293)
T KOG3053|consen 17 QELERCCWICFATDEDNRLAAWVHPCRCRGTTKWVHQSCLSRWIDEKQRGNPLQTVSCPQCQTEYI 82 (293)
T ss_pred cccceeEEEEeccCcccchhhhcccccccCccHHHHHHHHHHHHhHHhcCCCCceeechhhcchhe
Confidence 3467899999986554322 2553 336789999998643 27999987543
No 151
>PF03833 PolC_DP2: DNA polymerase II large subunit DP2; InterPro: IPR016033 DP2 is the large subunit of a two-subunit novel archaebacterial replicative DNA polymerase first characterised for Pyrococcus furiosus. The structure of DP2 appears to be organised as a ~950 residue component separated from a ~300 residue component by a ~150 residue intein. The other subunit, DP1, has sequence similarity to the eukaryotic DNA polymerase delta small subunit. This entry represents the N-terminal ~950 residue component of DP2.; GO: 0003887 DNA-directed DNA polymerase activity; PDB: 3O59_X.
Probab=44.95 E-value=7.2 Score=41.74 Aligned_cols=49 Identities=29% Similarity=0.590 Sum_probs=0.0
Q ss_pred CCCCCccccccCCCCCCCeEcCCCCc-----cChhHHHHHHhcCCCCCCCCCCCCC
Q 018471 294 AAPGVSKCTLCLSNRQDPTATPCGHV-----FCWNCIMEWCNEKPECPLCRAPITH 344 (355)
Q Consensus 294 ~~~~~~~C~iC~~~~~~p~~~~CgH~-----fC~~Ci~~~~~~~~~CP~Cr~~~~~ 344 (355)
.....+.|+-|...-....|..||-. +|..|-... ....||.|......
T Consensus 651 vei~~r~Cp~Cg~~t~~~~Cp~CG~~T~~~~~Cp~C~~~~--~~~~C~~C~~~~~~ 704 (900)
T PF03833_consen 651 VEIGRRRCPKCGKETFYNRCPECGSHTEPVYVCPDCGIEV--EEDECPKCGRETTS 704 (900)
T ss_dssp --------------------------------------------------------
T ss_pred EeeecccCcccCCcchhhcCcccCCccccceecccccccc--CccccccccccCcc
Confidence 33467899999987666677789854 799997653 33489999876543
No 152
>PF06844 DUF1244: Protein of unknown function (DUF1244); InterPro: IPR009654 This family consists of several short bacterial proteins of around 100 residues in length. The function of this family is unknown.; PDB: 2O35_A 3FYB_B.
Probab=43.64 E-value=14 Score=26.61 Aligned_cols=12 Identities=42% Similarity=1.262 Sum_probs=8.7
Q ss_pred ccChhHHHHHHh
Q 018471 319 VFCWNCIMEWCN 330 (355)
Q Consensus 319 ~fC~~Ci~~~~~ 330 (355)
.||..|+..|..
T Consensus 11 gFCRNCLskWy~ 22 (68)
T PF06844_consen 11 GFCRNCLSKWYR 22 (68)
T ss_dssp S--HHHHHHHHH
T ss_pred HHHHHHHHHHHH
Confidence 399999999975
No 153
>PF13972 TetR: Bacterial transcriptional repressor; PDB: 3RH2_A 3NNR_A.
Probab=43.04 E-value=6.4 Score=32.79 Aligned_cols=103 Identities=16% Similarity=0.188 Sum_probs=64.9
Q ss_pred CCCCCCCCchhhhhhhh-hHH---HHHHHHHHHHHHHHHhcchhHHHhcHHHHHHHHHHHHHHhhhcCCCCcccccccce
Q 018471 7 RRFPPAAQPEIMRAAEK-DEQ---YASFIYDACRDAFRQLFGTRVAVAYQSETKLVGQMLYYVLTTGSGQQTLGEEYCDI 82 (355)
Q Consensus 7 ~~fp~A~~p~Ilra~Qk-D~~---~~~~L~~~l~~~~~~~~g~r~~~~~~~ei~~~~~lly~~lTt~~g~qTlGeEy~~l 82 (355)
++|-+.+.++|++.+.. ... +.....+++..+++.+...+....=..++..+++.+-...|.|...+....+-.
T Consensus 38 YRF~~~dl~~Ll~~~p~L~~~~~~~~~~~~~~~~~l~~~l~~~g~l~~~~~~~~~La~~i~lv~t~Wl~~~~~~~~~~-- 115 (146)
T PF13972_consen 38 YRFFYRDLPDLLRRDPELKKRYRQLQQRRREQLRQLLQSLIEAGILRIDDEELQALADNIWLVSTFWLSFLETQHPRD-- 115 (146)
T ss_dssp THHHHHSHHHHHHC-HHHHHHHHHHHHHHHHHHHHHHHHHHHTTSB---GHHHHHHHHHHHHHHHCHHHHHHHHSS----
T ss_pred hhhHHccHHHHHHhCHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCHHHHHHHHHHHHHHHHHHHhHHHHhCccc--
Confidence 34555666777764332 222 344666777888888888887878899999999999999998876543221110
Q ss_pred EEecCCCCCCCchhHHHHHHHHHhhHHHHHHHHHHH
Q 018471 83 TQVVGPQRLPPTPARRALFIVYQTAVPYIAERIRYN 118 (355)
Q Consensus 83 ~~v~~~~~~~ps~~rr~~~vll~~~~pyl~~r~~~~ 118 (355)
........+.+.-++..+.||+..+-...
T Consensus 116 -------~~~~~~~~~gv~qv~~L~~PyLt~~~~~~ 144 (146)
T PF13972_consen 116 -------KLTEEDIRRGVYQVLSLLRPYLTPEGREE 144 (146)
T ss_dssp ----------HHCHHHHHHHHHHHHHCCB-HHHHHH
T ss_pred -------cchHHHHHHHHHHHHHHHHHhCCHHHHhh
Confidence 01223456778889999999998876543
No 154
>PF01363 FYVE: FYVE zinc finger; InterPro: IPR000306 Zinc finger (Znf) domains are relatively small protein motifs which contain multiple finger-like protrusions that make tandem contacts with their target molecule. Some of these domains bind zinc, but many do not; instead binding other metals such as iron, or no metal at all. For example, some family members form salt bridges to stabilise the finger-like folds. They were first identified as a DNA-binding motif in transcription factor TFIIIA from Xenopus laevis (African clawed frog), however they are now recognised to bind DNA, RNA, protein and/or lipid substrates [, , , , ]. Their binding properties depend on the amino acid sequence of the finger domains and of the linker between fingers, as well as on the higher-order structures and the number of fingers. Znf domains are often found in clusters, where fingers can have different binding specificities. There are many superfamilies of Znf motifs, varying in both sequence and structure. They display considerable versatility in binding modes, even between members of the same class (e.g. some bind DNA, others protein), suggesting that Znf motifs are stable scaffolds that have evolved specialised functions. For example, Znf-containing proteins function in gene transcription, translation, mRNA trafficking, cytoskeleton organisation, epithelial development, cell adhesion, protein folding, chromatin remodelling and zinc sensing, to name but a few []. Zinc-binding motifs are stable structures, and they rarely undergo conformational changes upon binding their target. The FYVE zinc finger is named after four proteins that it has been found in: Fab1, YOTB/ZK632.12, Vac1, and EEA1. The FYVE finger has been shown to bind two zinc ions []. The FYVE finger has eight potential zinc coordinating cysteine positions. Many members of this family also include two histidines in a motif R+HHC+XCG, where + represents a charged residue and X any residue. FYVE-type domains are divided into two known classes: FYVE domains that specifically bind to phosphatidylinositol 3-phosphate in lipid bilayers and FYVE-related domains of undetermined function []. Those that bind to phosphatidylinositol 3-phosphate are often found in proteins targeted to lipid membranes that are involved in regulating membrane traffic [, , ]. Most FYVE domains target proteins to endosomes by binding specifically to phosphatidylinositol-3-phosphate at the membrane surface. By contrast, the CARP2 FYVE-like domain is not optimized to bind to phosphoinositides or insert into lipid bilayers. FYVE domains are distinguished from other zinc fingers by three signature sequences: an N-terminal WxxD motif, a basic R(R/K)HHCR patch, and a C-terminal RVC motif. More information about these proteins can be found at Protein of the Month: Zinc Fingers [].; GO: 0046872 metal ion binding; PDB: 1HYI_A 1JOC_B 1HYJ_A 1DVP_A 3ZYQ_A 4AVX_A 1VFY_A 3T7L_A 1X4U_A 1WFK_A ....
Probab=42.65 E-value=4.8 Score=28.94 Aligned_cols=31 Identities=26% Similarity=0.606 Sum_probs=16.3
Q ss_pred CCccccccCCCCCC----CeEcCCCCccChhHHHH
Q 018471 297 GVSKCTLCLSNRQD----PTATPCGHVFCWNCIME 327 (355)
Q Consensus 297 ~~~~C~iC~~~~~~----p~~~~CgH~fC~~Ci~~ 327 (355)
+...|.+|...+.- -..-.||++||..|...
T Consensus 8 ~~~~C~~C~~~F~~~~rrhhCr~CG~~vC~~Cs~~ 42 (69)
T PF01363_consen 8 EASNCMICGKKFSLFRRRHHCRNCGRVVCSSCSSQ 42 (69)
T ss_dssp G-SB-TTT--B-BSSS-EEE-TTT--EEECCCS-E
T ss_pred CCCcCcCcCCcCCCceeeEccCCCCCEECCchhCC
Confidence 45789999988742 23457999999999754
No 155
>PF10571 UPF0547: Uncharacterised protein family UPF0547; InterPro: IPR018886 This domain may well be a type of zinc-finger as it carries two pairs of highly conserved cysteine residues though with no accompanying histidines. Several members are annotated as putative helicases.
Probab=42.18 E-value=8.1 Score=22.49 Aligned_cols=7 Identities=29% Similarity=0.852 Sum_probs=3.3
Q ss_pred ccccCCC
Q 018471 301 CTLCLSN 307 (355)
Q Consensus 301 C~iC~~~ 307 (355)
||-|...
T Consensus 3 CP~C~~~ 9 (26)
T PF10571_consen 3 CPECGAE 9 (26)
T ss_pred CCCCcCC
Confidence 4545443
No 156
>smart00132 LIM Zinc-binding domain present in Lin-11, Isl-1, Mec-3. Zinc-binding domain family. Some LIM domains bind protein partners via tyrosine-containing motifs. LIM domains are found in many key regulators of developmental pathways.
Probab=41.81 E-value=25 Score=21.35 Aligned_cols=35 Identities=26% Similarity=0.574 Sum_probs=19.9
Q ss_pred cccccCCCCCCC--eEcCCCCccChhHHHHHHhcCCCCCCCCCCC
Q 018471 300 KCTLCLSNRQDP--TATPCGHVFCWNCIMEWCNEKPECPLCRAPI 342 (355)
Q Consensus 300 ~C~iC~~~~~~p--~~~~CgH~fC~~Ci~~~~~~~~~CP~Cr~~~ 342 (355)
.|..|.+.+... ....=+..|+..| +.|..|+.++
T Consensus 1 ~C~~C~~~i~~~~~~~~~~~~~~H~~C--------f~C~~C~~~L 37 (39)
T smart00132 1 KCAGCGKPIRGGELVLRALGKVWHPEC--------FKCSKCGKPL 37 (39)
T ss_pred CccccCCcccCCcEEEEeCCccccccC--------CCCcccCCcC
Confidence 367777766542 2223345555555 5577776655
No 157
>PF10146 zf-C4H2: Zinc finger-containing protein ; InterPro: IPR018482 Zinc finger (Znf) domains are relatively small protein motifs which contain multiple finger-like protrusions that make tandem contacts with their target molecule. Some of these domains bind zinc, but many do not; instead binding other metals such as iron, or no metal at all. For example, some family members form salt bridges to stabilise the finger-like folds. They were first identified as a DNA-binding motif in transcription factor TFIIIA from Xenopus laevis (African clawed frog), however they are now recognised to bind DNA, RNA, protein and/or lipid substrates [, , , , ]. Their binding properties depend on the amino acid sequence of the finger domains and of the linker between fingers, as well as on the higher-order structures and the number of fingers. Znf domains are often found in clusters, where fingers can have different binding specificities. There are many superfamilies of Znf motifs, varying in both sequence and structure. They display considerable versatility in binding modes, even between members of the same class (e.g. some bind DNA, others protein), suggesting that Znf motifs are stable scaffolds that have evolved specialised functions. For example, Znf-containing proteins function in gene transcription, translation, mRNA trafficking, cytoskeleton organisation, epithelial development, cell adhesion, protein folding, chromatin remodelling and zinc sensing, to name but a few []. Zinc-binding motifs are stable structures, and they rarely undergo conformational changes upon binding their target. This entry represents a family of proteins which appears to have a highly conserved zinc finger domain at the C-terminal end, described as -C-X2-CH-X3-H-X5-C-X2-C-. The structure is predicted to contain a coiled coil. Members of this family are annotated as being tumour-associated antigen HCA127 in humans, but this could not be confirmed.
Probab=41.03 E-value=20 Score=32.70 Aligned_cols=24 Identities=33% Similarity=0.794 Sum_probs=20.0
Q ss_pred cChhHHHHHHhcCCCCCCCCCCCC
Q 018471 320 FCWNCIMEWCNEKPECPLCRAPIT 343 (355)
Q Consensus 320 fC~~Ci~~~~~~~~~CP~Cr~~~~ 343 (355)
-|.+|-....++.+.||+|+....
T Consensus 196 ~C~sC~qqIHRNAPiCPlCK~KsR 219 (230)
T PF10146_consen 196 TCQSCHQQIHRNAPICPLCKAKSR 219 (230)
T ss_pred hhHhHHHHHhcCCCCCcccccccc
Confidence 588898888889999999987553
No 158
>PF14446 Prok-RING_1: Prokaryotic RING finger family 1
Probab=40.68 E-value=43 Score=23.23 Aligned_cols=41 Identities=22% Similarity=0.534 Sum_probs=28.2
Q ss_pred CccccccCCCCC--CCe--EcCCCCccChhHHHHHHhcCCCCCC--CCCCC
Q 018471 298 VSKCTLCLSNRQ--DPT--ATPCGHVFCWNCIMEWCNEKPECPL--CRAPI 342 (355)
Q Consensus 298 ~~~C~iC~~~~~--~p~--~~~CgH~fC~~Ci~~~~~~~~~CP~--Cr~~~ 342 (355)
...|++|.+.++ +.+ ...||-.++..|... ...|-. |..++
T Consensus 5 ~~~C~~Cg~~~~~~dDiVvCp~CgapyHR~C~~~----~g~C~~~~c~~~~ 51 (54)
T PF14446_consen 5 GCKCPVCGKKFKDGDDIVVCPECGAPYHRDCWEK----AGGCINYSCGTGF 51 (54)
T ss_pred CccChhhCCcccCCCCEEECCCCCCcccHHHHhh----CCceEeccCCCCc
Confidence 568999999984 443 447999999999753 345544 54443
No 159
>KOG4451 consensus Uncharacterized conserved protein (tumor-associated antigen HCA127 in humans) [Function unknown]
Probab=39.54 E-value=19 Score=32.45 Aligned_cols=26 Identities=31% Similarity=0.750 Sum_probs=20.4
Q ss_pred CccChhHHHHHHhcCCCCCCCCCCCC
Q 018471 318 HVFCWNCIMEWCNEKPECPLCRAPIT 343 (355)
Q Consensus 318 H~fC~~Ci~~~~~~~~~CP~Cr~~~~ 343 (355)
.-.|.+|-....++.+.||+|+....
T Consensus 249 MK~ClsChqqIHRNAPiCPlCKaKsR 274 (286)
T KOG4451|consen 249 MKVCLSCHQQIHRNAPICPLCKAKSR 274 (286)
T ss_pred chHHHHHHHHHhcCCCCCcchhhccc
Confidence 34578888888888899999977543
No 160
>COG3813 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=39.03 E-value=22 Score=26.03 Aligned_cols=31 Identities=19% Similarity=0.476 Sum_probs=21.9
Q ss_pred CCccChhHHHHHHhcCCCCCCCCCCCCCCCcee
Q 018471 317 GHVFCWNCIMEWCNEKPECPLCRAPITHSSLVC 349 (355)
Q Consensus 317 gH~fC~~Ci~~~~~~~~~CP~Cr~~~~~~~~~~ 349 (355)
.|.||-+|....+ +..||-|...+....++|
T Consensus 28 EcTFCadCae~~l--~g~CPnCGGelv~RP~RP 58 (84)
T COG3813 28 ECTFCADCAENRL--HGLCPNCGGELVARPIRP 58 (84)
T ss_pred eeehhHhHHHHhh--cCcCCCCCchhhcCcCCh
Confidence 3679999987554 367999988776554443
No 161
>smart00290 ZnF_UBP Ubiquitin Carboxyl-terminal Hydrolase-like zinc finger.
Probab=38.08 E-value=22 Score=23.63 Aligned_cols=25 Identities=24% Similarity=0.510 Sum_probs=17.9
Q ss_pred cccccCCCCCCCeEcCCCCccChhH
Q 018471 300 KCTLCLSNRQDPTATPCGHVFCWNC 324 (355)
Q Consensus 300 ~C~iC~~~~~~p~~~~CgH~fC~~C 324 (355)
+|..|......-+.+.|+|++|...
T Consensus 1 ~C~~C~~~~~l~~CL~C~~~~c~~~ 25 (50)
T smart00290 1 RCSVCGTIENLWLCLTCGQVGCGRY 25 (50)
T ss_pred CcccCCCcCCeEEecCCCCcccCCC
Confidence 4777876554557788999999543
No 162
>KOG1729 consensus FYVE finger containing protein [General function prediction only]
Probab=37.15 E-value=16 Score=34.39 Aligned_cols=47 Identities=19% Similarity=0.528 Sum_probs=30.3
Q ss_pred CCCccccccCC-CCC----CCeEcCCCCccChhHHHHHHh-----cC--CCCCCCCCCC
Q 018471 296 PGVSKCTLCLS-NRQ----DPTATPCGHVFCWNCIMEWCN-----EK--PECPLCRAPI 342 (355)
Q Consensus 296 ~~~~~C~iC~~-~~~----~p~~~~CgH~fC~~Ci~~~~~-----~~--~~CP~Cr~~~ 342 (355)
.+...|.+|.. .+. ...+-.||++||..|=..... .+ ..|+.|=..+
T Consensus 166 ~ea~~C~~C~~~~Ftl~~RRHHCR~CG~ivC~~Cs~n~~~l~~~~~k~~rvC~~CF~el 224 (288)
T KOG1729|consen 166 SEATECMVCGCTEFTLSERRHHCRNCGDIVCAPCSRNRFLLPNLSTKPIRVCDICFEEL 224 (288)
T ss_pred ccceecccCCCccccHHHHHHHHHhcchHhhhhhhcCcccccccCCCCceecHHHHHHH
Confidence 35689999988 443 124668999999999654221 11 2677774433
No 163
>PF13248 zf-ribbon_3: zinc-ribbon domain
Probab=36.89 E-value=6.9 Score=22.61 Aligned_cols=8 Identities=50% Similarity=1.020 Sum_probs=3.7
Q ss_pred CCCCCCCC
Q 018471 333 PECPLCRA 340 (355)
Q Consensus 333 ~~CP~Cr~ 340 (355)
.-||.|..
T Consensus 17 ~fC~~CG~ 24 (26)
T PF13248_consen 17 KFCPNCGA 24 (26)
T ss_pred ccChhhCC
Confidence 34555544
No 164
>PLN02638 cellulose synthase A (UDP-forming), catalytic subunit
Probab=35.84 E-value=47 Score=36.87 Aligned_cols=47 Identities=23% Similarity=0.611 Sum_probs=32.4
Q ss_pred CCccccccCCCCCC-----C--eEcCCCCccChhHHHH-HHhcCCCCCCCCCCCC
Q 018471 297 GVSKCTLCLSNRQD-----P--TATPCGHVFCWNCIME-WCNEKPECPLCRAPIT 343 (355)
Q Consensus 297 ~~~~C~iC~~~~~~-----p--~~~~CgH~fC~~Ci~~-~~~~~~~CP~Cr~~~~ 343 (355)
....|.||.+..-. + .+-.||--.|..|..- .-..+..||.|+....
T Consensus 16 ~~qiCqICGD~vg~~~~Ge~FVAC~eC~FPVCrpCYEYEr~eG~q~CPqCktrYk 70 (1079)
T PLN02638 16 GGQVCQICGDNVGKTVDGEPFVACDVCAFPVCRPCYEYERKDGNQSCPQCKTKYK 70 (1079)
T ss_pred CCceeeecccccCcCCCCCEEEEeccCCCccccchhhhhhhcCCccCCccCCchh
Confidence 34589999987542 2 2346888899999832 2235579999988665
No 165
>KOG2113 consensus Predicted RNA binding protein, contains KH domain [General function prediction only]
Probab=35.60 E-value=12 Score=35.33 Aligned_cols=47 Identities=21% Similarity=0.376 Sum_probs=34.6
Q ss_pred CCCccccccCCCCCCCeEcCCCC-ccChhHHHHHHh-cCCCCCCCCCCC
Q 018471 296 PGVSKCTLCLSNRQDPTATPCGH-VFCWNCIMEWCN-EKPECPLCRAPI 342 (355)
Q Consensus 296 ~~~~~C~iC~~~~~~p~~~~CgH-~fC~~Ci~~~~~-~~~~CP~Cr~~~ 342 (355)
.....|.+|.+.-......+||| +||-.|....+. ....|++|..-+
T Consensus 134 ~~ti~~iqq~tnt~I~T~v~~~~~Vf~Vtg~~~nC~kra~s~eie~ta~ 182 (394)
T KOG2113|consen 134 GATIKRIQQFTNTYIATPVRCGEPVFCVTGAPKNCVKRARSCEIEQTAV 182 (394)
T ss_pred cCccchheecccceEeeeccCCCceEEEecCCcchhhhccccchhhhhh
Confidence 35678888887665566678999 699999877754 445699996543
No 166
>smart00647 IBR In Between Ring fingers. the domains occurs between pairs og RING fingers
Probab=34.94 E-value=7.5 Score=27.11 Aligned_cols=15 Identities=40% Similarity=1.380 Sum_probs=12.8
Q ss_pred CCCCccChhHHHHHH
Q 018471 315 PCGHVFCWNCIMEWC 329 (355)
Q Consensus 315 ~CgH~fC~~Ci~~~~ 329 (355)
.||+.||+.|..+|.
T Consensus 45 ~C~~~fC~~C~~~~H 59 (64)
T smart00647 45 KCGFSFCFRCKVPWH 59 (64)
T ss_pred CCCCeECCCCCCcCC
Confidence 689999999987774
No 167
>COG3132 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=34.49 E-value=51 Score=28.72 Aligned_cols=39 Identities=26% Similarity=0.288 Sum_probs=27.9
Q ss_pred HHHhcchhHHHhcHHHHHH---------HHHHHHHHhhhcCCCCccccc
Q 018471 39 FRQLFGTRVAVAYQSETKL---------VGQMLYYVLTTGSGQQTLGEE 78 (355)
Q Consensus 39 ~~~~~g~r~~~~~~~ei~~---------~~~lly~~lTt~~g~qTlGeE 78 (355)
++...|.| +.+|+....- ..+...-++-.++|.||+||=
T Consensus 68 vr~~sgsR-v~kyehrfcnsefgdlkl~~~evali~lLlLRGaQTpgEL 115 (215)
T COG3132 68 VRTVSGSR-VTKYEHRFCNSEFGDLKLSAAEVALITLLLLRGAQTPGEL 115 (215)
T ss_pred HHHhhcch-HHHHHHHHhhccccceeechHHHHHHHHHHHcCCCChhHH
Confidence 45667777 5577765544 456667777789999999993
No 168
>KOG1814 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=34.19 E-value=20 Score=35.27 Aligned_cols=34 Identities=26% Similarity=0.670 Sum_probs=26.2
Q ss_pred CCCccccccCCCCCC------CeEcCCCCccChhHHHHHH
Q 018471 296 PGVSKCTLCLSNRQD------PTATPCGHVFCWNCIMEWC 329 (355)
Q Consensus 296 ~~~~~C~iC~~~~~~------p~~~~CgH~fC~~Ci~~~~ 329 (355)
....+||-|...... -.++.|||.|||-|-...-
T Consensus 366 ~N~krCP~C~v~IEr~eGCnKM~C~~c~~~fc~~c~~~l~ 405 (445)
T KOG1814|consen 366 SNSKRCPKCKVVIERSEGCNKMHCTKCGTYFCWICAELLY 405 (445)
T ss_pred hcCCCCCcccceeecCCCccceeeccccccceeehhhhcC
Confidence 467899999876542 2578999999999986644
No 169
>PLN02189 cellulose synthase
Probab=34.19 E-value=32 Score=37.95 Aligned_cols=47 Identities=19% Similarity=0.469 Sum_probs=32.4
Q ss_pred CCccccccCCCCCC-----C--eEcCCCCccChhHHHHH-HhcCCCCCCCCCCCC
Q 018471 297 GVSKCTLCLSNRQD-----P--TATPCGHVFCWNCIMEW-CNEKPECPLCRAPIT 343 (355)
Q Consensus 297 ~~~~C~iC~~~~~~-----p--~~~~CgH~fC~~Ci~~~-~~~~~~CP~Cr~~~~ 343 (355)
....|.||.+..-. + .+-.|+--.|..|..-= ...+..||.|+....
T Consensus 33 ~~~~C~iCgd~vg~~~~g~~fvaC~~C~fpvCr~Cyeyer~eg~q~CpqCkt~Y~ 87 (1040)
T PLN02189 33 DGQVCEICGDEIGLTVDGDLFVACNECGFPVCRPCYEYERREGTQNCPQCKTRYK 87 (1040)
T ss_pred cCccccccccccCcCCCCCEEEeeccCCCccccchhhhhhhcCCccCcccCCchh
Confidence 44589999987542 2 23358878899998422 235579999988765
No 170
>KOG1356 consensus Putative transcription factor 5qNCA, contains JmjC domain [Transcription]
Probab=33.16 E-value=14 Score=39.52 Aligned_cols=49 Identities=16% Similarity=0.432 Sum_probs=35.1
Q ss_pred CCCccccccCCCCCC--CeEcCCCCccChhHHHHHH----h--cCCCCCCCCCCCCC
Q 018471 296 PGVSKCTLCLSNRQD--PTATPCGHVFCWNCIMEWC----N--EKPECPLCRAPITH 344 (355)
Q Consensus 296 ~~~~~C~iC~~~~~~--p~~~~CgH~fC~~Ci~~~~----~--~~~~CP~Cr~~~~~ 344 (355)
.....|..|.....+ -++..||+.+|..|+..|. . ....|+.|+..+..
T Consensus 227 g~~~mC~~C~~tlfn~hw~C~~C~~~~Cl~C~r~~~p~~~~~e~a~k~~~~~~~C~~ 283 (889)
T KOG1356|consen 227 GIREMCDRCETTLFNIHWRCPRCGFGVCLDCYRKWYPRLSKEEVAEKCEFSWLKCNK 283 (889)
T ss_pred CcchhhhhhcccccceeEEccccCCeeeecchhhccccchHhHhhhhhhHHHHhcCC
Confidence 345689999886664 4678999999999999994 1 12367766655543
No 171
>PTZ00303 phosphatidylinositol kinase; Provisional
Probab=33.12 E-value=27 Score=37.17 Aligned_cols=30 Identities=23% Similarity=0.521 Sum_probs=23.5
Q ss_pred ccccccCCCCC---------CCeEcCCCCccChhHHHHH
Q 018471 299 SKCTLCLSNRQ---------DPTATPCGHVFCWNCIMEW 328 (355)
Q Consensus 299 ~~C~iC~~~~~---------~p~~~~CgH~fC~~Ci~~~ 328 (355)
..|..|...+. ...+-.||.+||..|-...
T Consensus 461 dtC~~C~kkFfSlsK~L~~RKHHCRkCGrVFC~~CSSnR 499 (1374)
T PTZ00303 461 DSCPSCGRAFISLSRPLGTRAHHCRSCGIRLCVFCITKR 499 (1374)
T ss_pred CcccCcCCcccccccccccccccccCCccccCccccCCc
Confidence 56999999884 2346689999999997654
No 172
>KOG0802 consensus E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=31.90 E-value=33 Score=35.38 Aligned_cols=49 Identities=22% Similarity=0.622 Sum_probs=36.4
Q ss_pred CCCCCccccccCCCCCCCeEcCCCCccChhHHHHHHhcCCCCCCCCCCCCCCC
Q 018471 294 AAPGVSKCTLCLSNRQDPTATPCGHVFCWNCIMEWCNEKPECPLCRAPITHSS 346 (355)
Q Consensus 294 ~~~~~~~C~iC~~~~~~p~~~~CgH~fC~~Ci~~~~~~~~~CP~Cr~~~~~~~ 346 (355)
.......|.+|...+ ....++|. ...|+..|...+..||+|.+....++
T Consensus 475 l~~~~~~~~~~~~~~-~~~~~~~~---~~~~l~~~~~~~~~~pl~~~~~~~~~ 523 (543)
T KOG0802|consen 475 LREPNDVCAICYQEM-SARITPCS---HALCLRKWLYVQEVCPLCHTYMKEDD 523 (543)
T ss_pred hhcccCcchHHHHHH-Hhcccccc---chhHHHhhhhhccccCCCchhhhccc
Confidence 334567899999887 55566777 36788888888899999988766543
No 173
>cd00350 rubredoxin_like Rubredoxin_like; nonheme iron binding domain containing a [Fe(SCys)4] center. The family includes rubredoxins, a small electron transfer protein, and a slightly smaller modular rubredoxin domain present in rubrerythrin and nigerythrin and detected either N- or C-terminal to such proteins as flavin reductase, NAD(P)H-nitrite reductase, and ferredoxin-thioredoxin reductase. In rubredoxin, the iron atom is coordinated by four cysteine residues (Fe(S-Cys)4), but iron can also be replaced by cobalt, nickel or zinc and believed to be involved in electron transfer. Rubrerythrins and nigerythrins are small homodimeric proteins, generally consisting of 2 domains: a rubredoxin domain C-terminal to a non-sulfur, oxo-bridged diiron site in the N-terminal rubrerythrin domain. Rubrerythrins and nigerythrins have putative peroxide activity.
Probab=30.93 E-value=31 Score=21.03 Aligned_cols=11 Identities=45% Similarity=1.026 Sum_probs=7.6
Q ss_pred cCCCCCCCCCC
Q 018471 331 EKPECPLCRAP 341 (355)
Q Consensus 331 ~~~~CP~Cr~~ 341 (355)
....||.|+.+
T Consensus 16 ~~~~CP~Cg~~ 26 (33)
T cd00350 16 APWVCPVCGAP 26 (33)
T ss_pred CCCcCcCCCCc
Confidence 34589999663
No 174
>KOG2979 consensus Protein involved in DNA repair [General function prediction only]
Probab=29.77 E-value=30 Score=31.86 Aligned_cols=45 Identities=20% Similarity=0.393 Sum_probs=35.5
Q ss_pred CCccccccCCCCCCCeE-cCCCCccChhHHHHHHhc--CCCCCCCCCC
Q 018471 297 GVSKCTLCLSNRQDPTA-TPCGHVFCWNCIMEWCNE--KPECPLCRAP 341 (355)
Q Consensus 297 ~~~~C~iC~~~~~~p~~-~~CgH~fC~~Ci~~~~~~--~~~CP~Cr~~ 341 (355)
-++.||+-..++.+|+. ..|||+|=.+-|...+.. .-.||.-..+
T Consensus 175 fs~rdPis~~~I~nPviSkkC~HvydrDsI~~~l~~~~~i~CPv~gC~ 222 (262)
T KOG2979|consen 175 FSNRDPISKKPIVNPVISKKCGHVYDRDSIMQILCDEITIRCPVLGCE 222 (262)
T ss_pred hcccCchhhhhhhchhhhcCcCcchhhhhHHHHhccCceeecccccCC
Confidence 46899998888888865 579999999999988765 3578876554
No 175
>PF09723 Zn-ribbon_8: Zinc ribbon domain; InterPro: IPR013429 This entry represents a region of about 41 amino acids found in a number of small proteins in a wide range of bacteria. The region usually begins with the initiator Met and contains two CxxC motifs separated by 17 amino acids. One protein in this entry has been noted as a putative regulatory protein, designated FmdB []. Most proteins in this entry have a C-terminal region containing highly degenerate sequence.
Probab=29.32 E-value=14 Score=23.96 Aligned_cols=27 Identities=26% Similarity=0.551 Sum_probs=14.6
Q ss_pred EcCCCCccChhHHHHHHhcCCCCCCCCC
Q 018471 313 ATPCGHVFCWNCIMEWCNEKPECPLCRA 340 (355)
Q Consensus 313 ~~~CgH~fC~~Ci~~~~~~~~~CP~Cr~ 340 (355)
+..|||.|--..-..- .....||.|+.
T Consensus 8 C~~Cg~~fe~~~~~~~-~~~~~CP~Cg~ 34 (42)
T PF09723_consen 8 CEECGHEFEVLQSISE-DDPVPCPECGS 34 (42)
T ss_pred eCCCCCEEEEEEEcCC-CCCCcCCCCCC
Confidence 3457766544321111 23468999977
No 176
>KOG3842 consensus Adaptor protein Pellino [Signal transduction mechanisms]
Probab=29.29 E-value=22 Score=33.69 Aligned_cols=52 Identities=27% Similarity=0.517 Sum_probs=29.3
Q ss_pred CCccccccCCCCCC-------------C-eEcCCCCccChh---HHHHHHhcCCCCCCCCCCCCCCCceecc
Q 018471 297 GVSKCTLCLSNRQD-------------P-TATPCGHVFCWN---CIMEWCNEKPECPLCRAPITHSSLVCLY 351 (355)
Q Consensus 297 ~~~~C~iC~~~~~~-------------p-~~~~CgH~fC~~---Ci~~~~~~~~~CP~Cr~~~~~~~~~~l~ 351 (355)
...+||+=+..+.- | +-+.|||+-.+. |-...-....+||+|+..-+ ++||+
T Consensus 289 ~RPQCPVglnTL~~P~~~~~~~~~~~QP~vYl~CGHV~G~H~WG~~e~~g~~~r~CPmC~~~gp---~V~L~ 357 (429)
T KOG3842|consen 289 ARPQCPVGLNTLAFPSKRRKRVVDEKQPWVYLNCGHVHGYHNWGVRENTGQRERECPMCRVVGP---YVPLW 357 (429)
T ss_pred cCCCCCcccceeecccccccccccccCCeEEEeccccccccccccccccCcccCcCCeeeeecc---eeeee
Confidence 46688876665432 2 346799985543 21111113468999976433 55553
No 177
>PF06750 DiS_P_DiS: Bacterial Peptidase A24 N-terminal domain; InterPro: IPR010627 In the MEROPS database peptidases and peptidase homologues are grouped into clans and families. Clans are groups of families for which there is evidence of common ancestry based on a common structural fold: Each clan is identified with two letters, the first representing the catalytic type of the families included in the clan (with the letter 'P' being used for a clan containing families of more than one of the catalytic types serine, threonine and cysteine). Some families cannot yet be assigned to clans, and when a formal assignment is required, such a family is described as belonging to clan A-, C-, M-, N-, S-, T- or U-, according to the catalytic type. Some clans are divided into subclans because there is evidence of a very ancient divergence within the clan, for example MA(E), the gluzincins, and MA(M), the metzincins. Peptidase families are grouped by their catalytic type, the first character representing the catalytic type: A, aspartic; C, cysteine; G, glutamic acid; M, metallo; N, asparagine; S, serine; T, threonine; and U, unknown. The serine, threonine and cysteine peptidases utilise the amino acid as a nucleophile and form an acyl intermediate - these peptidases can also readily act as transferases. In the case of aspartic, glutamic and metallopeptidases, the nucleophile is an activated water molecule. In the case of the asparagine endopeptidases, the nucleophile is asparagine and all are self-processing endopeptidases. In many instances the structural protein fold that characterises the clan or family may have lost its catalytic activity, yet retain its function in protein recognition and binding. Aspartic endopeptidases 3.4.23. from EC of vertebrate, fungal and retroviral origin have been characterised []. More recently, aspartic endopeptidases associated with the processing of bacterial type 4 prepilin [] and archaean preflagellin have been described [, ]. Structurally, aspartic endopeptidases are bilobal enzymes, each lobe contributing a catalytic Asp residue, with an extended active site cleft localised between the two lobes of the molecule. One lobe has probably evolved from the other through a gene duplication event in the distant past. In modern-day enzymes, although the three-dimensional structures are very similar, the amino acid sequences are more divergent, except for the catalytic site motif, which is very conserved. The presence and position of disulphide bridges are other conserved features of aspartic peptidases. All or most aspartate peptidases are endopeptidases. These enzymes have been assigned into clans (proteins which are evolutionary related), and further sub-divided into families, largely on the basis of their tertiary structure. This domain is found at the N terminus of bacterial aspartic peptidases belonging to MEROPS peptidase family A24 (clan AD), subfamily A24A (type IV prepilin peptidase, IPR000045 from INTERPRO). It's function has not been specifically determined; however some of the family have been characterised as bifunctional [], and this domain may contain the N-methylation activity. The domain consists of an intracellular region between a pair of transmembrane domains. This intracellular region contains an invariant proline and four conserved cysteines. These Cys residues are arranged in a two-pair motif, with the Cys residues of a pair separated (usually) by 2 aa and with each pair separated by 21 largely hydrophilic residues (C-X-X-C...X21...C-X-X-C); they have been shown to be essential to the overall function of the enzyme [, ]. The bifunctional enzyme prepilin peptidase (PilD) from Pseudomonas aeruginosa is a key determinant in both type-IV pilus biogenesis and extracellular protein secretion, in its roles as a leader peptidase and methyl transferase (MTase). It is responsible for endopeptidic cleavage of the unique leader peptides that characterise type-IV pilin precursors, as well as proteins with homologous leader sequences that are essential components of the general secretion pathway found in a variety of Gram-negative pathogens. Following removal of the leader peptides, the same enzyme is responsible for the second posttranslational modification that characterises the type-IV pilins and their homologues, namely N-methylation of the newly exposed N-terminal amino acid residue [].
Probab=29.12 E-value=21 Score=27.57 Aligned_cols=10 Identities=50% Similarity=1.185 Sum_probs=5.8
Q ss_pred CCCCCCCCCC
Q 018471 334 ECPLCRAPIT 343 (355)
Q Consensus 334 ~CP~Cr~~~~ 343 (355)
.|..|+++++
T Consensus 60 rCr~C~~~I~ 69 (92)
T PF06750_consen 60 RCRYCGAPIP 69 (92)
T ss_pred CCcccCCCCC
Confidence 5666665554
No 178
>PF14353 CpXC: CpXC protein
Probab=28.72 E-value=47 Score=26.94 Aligned_cols=11 Identities=27% Similarity=0.697 Sum_probs=8.8
Q ss_pred CCCCCCCCCCC
Q 018471 333 PECPLCRAPIT 343 (355)
Q Consensus 333 ~~CP~Cr~~~~ 343 (355)
.+||.|+..+.
T Consensus 39 ~~CP~Cg~~~~ 49 (128)
T PF14353_consen 39 FTCPSCGHKFR 49 (128)
T ss_pred EECCCCCCcee
Confidence 58999988765
No 179
>KOG1609 consensus Protein involved in mRNA turnover and stability [RNA processing and modification]
Probab=28.21 E-value=68 Score=30.07 Aligned_cols=48 Identities=17% Similarity=0.616 Sum_probs=34.7
Q ss_pred CCccccccCCCCCC----CeEcCCCC-----ccChhHHHHHHh--cCCCCCCCCCCCCC
Q 018471 297 GVSKCTLCLSNRQD----PTATPCGH-----VFCWNCIMEWCN--EKPECPLCRAPITH 344 (355)
Q Consensus 297 ~~~~C~iC~~~~~~----p~~~~CgH-----~fC~~Ci~~~~~--~~~~CP~Cr~~~~~ 344 (355)
+...|-||...... +...||.. ..+..|+..|.. .+..|..|......
T Consensus 77 ~~~~cRIc~~~~~~~~~~~l~~pC~C~g~l~~vH~~cl~~W~~~~~~~~CeiC~~~~~~ 135 (323)
T KOG1609|consen 77 SGPICRICHEEDEESNGLLLISPCSCKGSLAYVHRSCLEKWFSIKGNITCEICKSFFIN 135 (323)
T ss_pred CCCcEEEEecccccccccccccCccccCcHHHHHHHHHHhhhccccCeeeeccccccee
Confidence 35789999885532 46667642 358899999997 56799999876543
No 180
>PF00412 LIM: LIM domain; InterPro: IPR001781 Zinc finger (Znf) domains are relatively small protein motifs which contain multiple finger-like protrusions that make tandem contacts with their target molecule. Some of these domains bind zinc, but many do not; instead binding other metals such as iron, or no metal at all. For example, some family members form salt bridges to stabilise the finger-like folds. They were first identified as a DNA-binding motif in transcription factor TFIIIA from Xenopus laevis (African clawed frog), however they are now recognised to bind DNA, RNA, protein and/or lipid substrates [, , , , ]. Their binding properties depend on the amino acid sequence of the finger domains and of the linker between fingers, as well as on the higher-order structures and the number of fingers. Znf domains are often found in clusters, where fingers can have different binding specificities. There are many superfamilies of Znf motifs, varying in both sequence and structure. They display considerable versatility in binding modes, even between members of the same class (e.g. some bind DNA, others protein), suggesting that Znf motifs are stable scaffolds that have evolved specialised functions. For example, Znf-containing proteins function in gene transcription, translation, mRNA trafficking, cytoskeleton organisation, epithelial development, cell adhesion, protein folding, chromatin remodelling and zinc sensing, to name but a few []. Zinc-binding motifs are stable structures, and they rarely undergo conformational changes upon binding their target. This entry represents LIM-type zinc finger (Znf) domains. LIM domains coordinate one or more zinc atoms, and are named after the three proteins (LIN-11, Isl1 and MEC-3) in which they were first found. They consist of two zinc-binding motifs that resemble GATA-like Znf's, however the residues holding the zinc atom(s) are variable, involving Cys, His, Asp or Glu residues. LIM domains are involved in proteins with differing functions, including gene expression, and cytoskeleton organisation and development [, ]. Protein containing LIM Znf domains include: Caenorhabditis elegans mec-3; a protein required for the differentiation of the set of six touch receptor neurons in this nematode. C. elegans. lin-11; a protein required for the asymmetric division of vulval blast cells. Vertebrate insulin gene enhancer binding protein isl-1. Isl-1 binds to one of the two cis-acting protein-binding domains of the insulin gene. Vertebrate homeobox proteins lim-1, lim-2 (lim-5) and lim3. Vertebrate lmx-1, which acts as a transcriptional activator by binding to the FLAT element; a beta-cell-specific transcriptional enhancer found in the insulin gene. Mammalian LH-2, a transcriptional regulatory protein involved in the control of cell differentiation in developing lymphoid and neural cell types. Drosophila melanogaster (Fruit fly) protein apterous, required for the normal development of the wing and halter imaginal discs. Vertebrate protein kinases LIMK-1 and LIMK-2. Mammalian rhombotins. Rhombotin 1 (RBTN1 or TTG-1) and rhombotin-2 (RBTN2 or TTG-2) are proteins of about 160 amino acids whose genes are disrupted by chromosomal translocations in T-cell leukemia. Mammalian and avian cysteine-rich protein (CRP), a 192 amino-acid protein of unknown function. Seems to interact with zyxin. Mammalian cysteine-rich intestinal protein (CRIP), a small protein which seems to have a role in zinc absorption and may function as an intracellular zinc transport protein. Vertebrate paxillin, a cytoskeletal focal adhesion protein. Mus musculus (Mouse) testin which should not be confused with rat testin which is a thiol protease homologue (see IPR000169 from INTERPRO). Helianthus annuus (Common sunflower) pollen specific protein SF3. Chicken zyxin. Zyxin is a low-abundance adhesion plaque protein which has been shown to interact with CRP. Yeast protein LRG1 which is involved in sporulation []. Saccharomyces cerevisiae (Baker's yeast) rho-type GTPase activating protein RGA1/DBM1. C. elegans homeobox protein ceh-14. C. elegans homeobox protein unc-97. S. cerevisiae hypothetical protein YKR090w. C. elegans hypothetical proteins C28H8.6. These proteins generally contain two tandem copies of the LIM domain in their N-terminal section. Zyxin and paxillin are exceptions in that they contain respectively three and four LIM domains at their C-terminal extremity. In apterous, isl-1, LH-2, lin-11, lim-1 to lim-3, lmx-1 and ceh-14 and mec-3 there is a homeobox domain some 50 to 95 amino acids after the LIM domains. LIM domains contain seven conserved cysteine residues and a histidine. The arrangement followed by these conserved residues is: C-x(2)-C-x(16,23)-H-x(2)-[CH]-x(2)-C-x(2)-C-x(16,21)-C-x(2,3)-[CHD] LIM domains bind two zinc ions []. LIM does not bind DNA, rather it seems to act as an interface for protein-protein interaction. More information about these proteins can be found at Protein of the Month: Zinc Fingers [].; GO: 0008270 zinc ion binding; PDB: 2CO8_A 2EGQ_A 2CUR_A 3IXE_B 1CTL_A 1B8T_A 1X62_A 2DFY_C 1IML_A 2CUQ_A ....
Probab=28.11 E-value=29 Score=23.52 Aligned_cols=30 Identities=23% Similarity=0.452 Sum_probs=14.3
Q ss_pred CCccccccCCCCCCC-eEcCCCCccChhHHH
Q 018471 297 GVSKCTLCLSNRQDP-TATPCGHVFCWNCIM 326 (355)
Q Consensus 297 ~~~~C~iC~~~~~~p-~~~~CgH~fC~~Ci~ 326 (355)
+-+.|..|...+... ....=|.++|..|..
T Consensus 25 ~Cf~C~~C~~~l~~~~~~~~~~~~~C~~c~~ 55 (58)
T PF00412_consen 25 ECFKCSKCGKPLNDGDFYEKDGKPYCKDCYQ 55 (58)
T ss_dssp TTSBETTTTCBTTTSSEEEETTEEEEHHHHH
T ss_pred cccccCCCCCccCCCeeEeECCEEECHHHHh
Confidence 345555555554433 233344555555543
No 181
>PF04423 Rad50_zn_hook: Rad50 zinc hook motif; InterPro: IPR007517 The Mre11 complex (Mre11 Rad50 Nbs1) is central to chromosomal maintenance and functions in homologous recombination, telomere maintenance and sister chromatid association. The Rad50 coiled-coil region contains a dimer interface at the apex of the coiled coils in which pairs of conserved Cys-X-X-Cys motifs form interlocking hooks that bind one Zn ion. This alignment includes the zinc hook motif and a short stretch of coiled-coil on either side.; GO: 0004518 nuclease activity, 0005524 ATP binding, 0008270 zinc ion binding, 0006281 DNA repair; PDB: 1L8D_B.
Probab=27.54 E-value=20 Score=24.54 Aligned_cols=11 Identities=45% Similarity=1.235 Sum_probs=5.3
Q ss_pred CCCCCCCCCCC
Q 018471 334 ECPLCRAPITH 344 (355)
Q Consensus 334 ~CP~Cr~~~~~ 344 (355)
.||+|..++..
T Consensus 22 ~CPlC~r~l~~ 32 (54)
T PF04423_consen 22 CCPLCGRPLDE 32 (54)
T ss_dssp E-TTT--EE-H
T ss_pred cCCCCCCCCCH
Confidence 78888887764
No 182
>KOG1829 consensus Uncharacterized conserved protein, contains C1, PH and RUN domains [Signal transduction mechanisms]
Probab=27.52 E-value=20 Score=37.02 Aligned_cols=23 Identities=35% Similarity=0.899 Sum_probs=17.8
Q ss_pred EcCCCCccChhHHHHHHhcCCCCCCC
Q 018471 313 ATPCGHVFCWNCIMEWCNEKPECPLC 338 (355)
Q Consensus 313 ~~~CgH~fC~~Ci~~~~~~~~~CP~C 338 (355)
+..||++|+..|+.. ..+.||.|
T Consensus 534 C~~C~avfH~~C~~r---~s~~CPrC 556 (580)
T KOG1829|consen 534 CSTCLAVFHKKCLRR---KSPCCPRC 556 (580)
T ss_pred HHHHHHHHHHHHHhc---cCCCCCch
Confidence 457999999999763 34559999
No 183
>PF09889 DUF2116: Uncharacterized protein containing a Zn-ribbon (DUF2116); InterPro: IPR019216 This entry contains various hypothetical prokaryotic proteins whose functions are unknown. They contain a conserved zinc ribbon motif in the N-terminal part and a predicted transmembrane segment in the C-terminal part.
Probab=27.30 E-value=35 Score=24.13 Aligned_cols=16 Identities=31% Similarity=0.879 Sum_probs=11.1
Q ss_pred cCCCCCCCCCCCCCCC
Q 018471 331 EKPECPLCRAPITHSS 346 (355)
Q Consensus 331 ~~~~CP~Cr~~~~~~~ 346 (355)
.+..||.|+++++.++
T Consensus 2 ~HkHC~~CG~~Ip~~~ 17 (59)
T PF09889_consen 2 PHKHCPVCGKPIPPDE 17 (59)
T ss_pred CCCcCCcCCCcCCcch
Confidence 3467888888777654
No 184
>PLN02195 cellulose synthase A
Probab=26.57 E-value=70 Score=35.22 Aligned_cols=45 Identities=18% Similarity=0.548 Sum_probs=32.2
Q ss_pred CccccccCCCCC-----CC--eEcCCCCccChhHHHHHH--hcCCCCCCCCCCCC
Q 018471 298 VSKCTLCLSNRQ-----DP--TATPCGHVFCWNCIMEWC--NEKPECPLCRAPIT 343 (355)
Q Consensus 298 ~~~C~iC~~~~~-----~p--~~~~CgH~fC~~Ci~~~~--~~~~~CP~Cr~~~~ 343 (355)
...|.||.+..- ++ .+-.|+-..|..|.. +- ..+..||.|+....
T Consensus 6 ~~~c~~cgd~~~~~~~g~~fvaC~eC~~pvCrpCye-yer~eg~q~CpqCkt~Yk 59 (977)
T PLN02195 6 APICATCGEEVGVDSNGEAFVACHECSYPLCKACLE-YEIKEGRKVCLRCGGPYD 59 (977)
T ss_pred CccceecccccCcCCCCCeEEEeccCCCccccchhh-hhhhcCCccCCccCCccc
Confidence 458999988653 22 244688889999983 33 24578999998777
No 185
>COG4997 Uncharacterized conserved protein [Function unknown]
Probab=26.42 E-value=1.7e+02 Score=22.18 Aligned_cols=48 Identities=15% Similarity=0.253 Sum_probs=34.3
Q ss_pred Cchhhhhhh--------hhHHHHHHHHHHHHHHHHHhcchhHHHhcHHHHHHHHHHHHHH
Q 018471 14 QPEIMRAAE--------KDEQYASFIYDACRDAFRQLFGTRVAVAYQSETKLVGQMLYYV 65 (355)
Q Consensus 14 ~p~Ilra~Q--------kD~~~~~~L~~~l~~~~~~~~g~r~~~~~~~ei~~~~~lly~~ 65 (355)
-||||+-+- .|++|...|...+.+-+.-+. .+++..|+..+++++---
T Consensus 12 IpEII~nsgr~~~~h~a~d~ey~~~Le~KL~EE~~E~l----edk~lEeLadllEvi~~i 67 (95)
T COG4997 12 IPEIILNSGRIPVTHIAEDEEYKELLENKLLEEVEEFL----EDKNLEELADLLEVISRI 67 (95)
T ss_pred hHHHHHhCCCccchhhccHHHHHHHHHHHHHHHHHHHH----hcccHHHHHHHHHHHHHH
Confidence 478776443 388999999988888775554 457777888777766543
No 186
>KOG2169 consensus Zn-finger transcription factor [Transcription]
Probab=26.17 E-value=58 Score=34.39 Aligned_cols=52 Identities=19% Similarity=0.440 Sum_probs=34.4
Q ss_pred CCCccccccCCCCCCCe-EcCCCCccChhHHHHHHh----cCCCCCCCCCCCCCCCc
Q 018471 296 PGVSKCTLCLSNRQDPT-ATPCGHVFCWNCIMEWCN----EKPECPLCRAPITHSSL 347 (355)
Q Consensus 296 ~~~~~C~iC~~~~~~p~-~~~CgH~fC~~Ci~~~~~----~~~~CP~Cr~~~~~~~~ 347 (355)
.-...|+++...+.-|. ...|+|+-|-+-..-... ....||+|.+....+++
T Consensus 304 ~vSL~CPl~~~Rm~~P~r~~~CkHlQcFD~~~~lq~n~~~pTW~CPVC~~~~~~e~l 360 (636)
T KOG2169|consen 304 RVSLNCPLSKMRMSLPARGHTCKHLQCFDALSYLQMNEQKPTWRCPVCQKAAPFEGL 360 (636)
T ss_pred eeEecCCcccceeecCCcccccccceecchhhhHHhccCCCeeeCccCCccccccch
Confidence 35789999888777654 347888777665432211 22489999887765554
No 187
>PF12773 DZR: Double zinc ribbon
Probab=25.95 E-value=60 Score=21.45 Aligned_cols=12 Identities=33% Similarity=0.595 Sum_probs=7.7
Q ss_pred CCCCCCCCCCCC
Q 018471 333 PECPLCRAPITH 344 (355)
Q Consensus 333 ~~CP~Cr~~~~~ 344 (355)
..||.|...+..
T Consensus 30 ~~C~~Cg~~~~~ 41 (50)
T PF12773_consen 30 KICPNCGAENPP 41 (50)
T ss_pred CCCcCCcCCCcC
Confidence 467777766554
No 188
>PF14569 zf-UDP: Zinc-binding RING-finger; PDB: 1WEO_A.
Probab=25.84 E-value=54 Score=24.50 Aligned_cols=47 Identities=17% Similarity=0.420 Sum_probs=19.1
Q ss_pred CCccccccCCCCCC-----C--eEcCCCCccChhHHHHHHh-cCCCCCCCCCCCC
Q 018471 297 GVSKCTLCLSNRQD-----P--TATPCGHVFCWNCIMEWCN-EKPECPLCRAPIT 343 (355)
Q Consensus 297 ~~~~C~iC~~~~~~-----p--~~~~CgH~fC~~Ci~~~~~-~~~~CP~Cr~~~~ 343 (355)
....|.||.+..-. + .+..|+-..|..|..--.+ .+..||.|+.+..
T Consensus 8 ~~qiCqiCGD~VGl~~~Ge~FVAC~eC~fPvCr~CyEYErkeg~q~CpqCkt~yk 62 (80)
T PF14569_consen 8 NGQICQICGDDVGLTENGEVFVACHECAFPVCRPCYEYERKEGNQVCPQCKTRYK 62 (80)
T ss_dssp SS-B-SSS--B--B-SSSSB--S-SSS-----HHHHHHHHHTS-SB-TTT--B--
T ss_pred CCcccccccCccccCCCCCEEEEEcccCCccchhHHHHHhhcCcccccccCCCcc
Confidence 34689999886531 1 2335788889999864333 5578999987665
No 189
>smart00734 ZnF_Rad18 Rad18-like CCHC zinc finger. Yeast Rad18p functions with Rad5p in error-free post-replicative DNA repair. This zinc finger is likely to bind nucleic-acids.
Probab=25.63 E-value=25 Score=20.30 Aligned_cols=10 Identities=30% Similarity=1.099 Sum_probs=6.9
Q ss_pred CCCCCCCCCC
Q 018471 334 ECPLCRAPIT 343 (355)
Q Consensus 334 ~CP~Cr~~~~ 343 (355)
.||.|.+.+.
T Consensus 3 ~CPiC~~~v~ 12 (26)
T smart00734 3 QCPVCFREVP 12 (26)
T ss_pred cCCCCcCccc
Confidence 5788877664
No 190
>PF12132 DUF3587: Protein of unknown function (DUF3587); InterPro: IPR021982 This entry is represented by Hyposoter fugitivus ichnovirus, Gp7; it is a family of uncharacterised viral proteins.
Probab=24.15 E-value=59 Score=28.95 Aligned_cols=22 Identities=27% Similarity=0.798 Sum_probs=15.9
Q ss_pred CCCeEcCCC----CccChhHHHHHHh
Q 018471 309 QDPTATPCG----HVFCWNCIMEWCN 330 (355)
Q Consensus 309 ~~p~~~~Cg----H~fC~~Ci~~~~~ 330 (355)
..|....|. |+||+.++..|+.
T Consensus 152 ~~p~~~~C~~gHfHHyCs~HV~~WL~ 177 (199)
T PF12132_consen 152 VKPSVDECEYGHFHHYCSQHVNSWLN 177 (199)
T ss_pred cCCCCCCCCCCCcChhhHHHHHHHHH
Confidence 345455554 6899999999985
No 191
>PLN02436 cellulose synthase A
Probab=24.13 E-value=63 Score=35.92 Aligned_cols=47 Identities=19% Similarity=0.529 Sum_probs=32.3
Q ss_pred CCccccccCCCCCC-----C--eEcCCCCccChhHHHHHH-hcCCCCCCCCCCCC
Q 018471 297 GVSKCTLCLSNRQD-----P--TATPCGHVFCWNCIMEWC-NEKPECPLCRAPIT 343 (355)
Q Consensus 297 ~~~~C~iC~~~~~~-----p--~~~~CgH~fC~~Ci~~~~-~~~~~CP~Cr~~~~ 343 (355)
....|.||.+..-. + .+--|+--.|..|..-=- ..+..||.|+....
T Consensus 35 ~~~iCqICGD~Vg~t~dGe~FVACn~C~fpvCr~Cyeyer~eg~~~Cpqckt~Y~ 89 (1094)
T PLN02436 35 SGQTCQICGDEIELTVDGEPFVACNECAFPVCRPCYEYERREGNQACPQCKTRYK 89 (1094)
T ss_pred CCccccccccccCcCCCCCEEEeeccCCCccccchhhhhhhcCCccCcccCCchh
Confidence 34589999987532 1 233588789999984222 24579999988765
No 192
>PF02318 FYVE_2: FYVE-type zinc finger; InterPro: IPR003315 This entry represents the zinc-binding domain found in rabphilin Rab3A. The small G protein Rab3A plays an important role in the regulation of neurotransmitter release. The crystal structure of the small G protein Rab3A complexed with the effector domain of rabphilin-3A shows that the effector domain of rabphilin-3A contacts Rab3A in two distinct areas. The first interface involves the Rab3A switch I and switch II regions, which are sensitive to the nucleotide-binding state of Rab3A. The second interface consists of a deep pocket in Rab3A that interacts with a SGAWFF structural element of rabphilin-3A. Sequence and structure analysis, and biochemical data suggest that this pocket, or Rab complementarity-determining region (RabCDR), establishes a specific interaction between each Rab protein and its effectors. It has been suggested that RabCDRs could be major determinants of effector specificity during vesicle trafficking and fusion [].; GO: 0008270 zinc ion binding, 0017137 Rab GTPase binding, 0006886 intracellular protein transport; PDB: 2CSZ_A 2ZET_C 1ZBD_B 3BC1_B 2CJS_C 2A20_A.
Probab=23.86 E-value=34 Score=27.57 Aligned_cols=30 Identities=23% Similarity=0.557 Sum_probs=19.8
Q ss_pred CCccccccCCCCC---C--CeEcCCCCccChhHHH
Q 018471 297 GVSKCTLCLSNRQ---D--PTATPCGHVFCWNCIM 326 (355)
Q Consensus 297 ~~~~C~iC~~~~~---~--p~~~~CgH~fC~~Ci~ 326 (355)
++..|.+|..++. + ..+..|+|.+|..|-.
T Consensus 53 ~~~~C~~C~~~fg~l~~~~~~C~~C~~~VC~~C~~ 87 (118)
T PF02318_consen 53 GERHCARCGKPFGFLFNRGRVCVDCKHRVCKKCGV 87 (118)
T ss_dssp CCSB-TTTS-BCSCTSTTCEEETTTTEEEETTSEE
T ss_pred CCcchhhhCCcccccCCCCCcCCcCCccccCccCC
Confidence 4579999988653 2 3456788888888854
No 193
>PF13824 zf-Mss51: Zinc-finger of mitochondrial splicing suppressor 51
Probab=23.71 E-value=69 Score=22.30 Aligned_cols=8 Identities=25% Similarity=0.953 Sum_probs=4.8
Q ss_pred ccccCCCC
Q 018471 301 CTLCLSNR 308 (355)
Q Consensus 301 C~iC~~~~ 308 (355)
|++|....
T Consensus 2 Cpv~~~~~ 9 (55)
T PF13824_consen 2 CPVCKKDL 9 (55)
T ss_pred CCCCcccc
Confidence 66666643
No 194
>PLN02915 cellulose synthase A [UDP-forming], catalytic subunit
Probab=23.67 E-value=97 Score=34.42 Aligned_cols=47 Identities=21% Similarity=0.510 Sum_probs=32.5
Q ss_pred CCccccccCCCCCC-----C--eEcCCCCccChhHHHHHH-hcCCCCCCCCCCCC
Q 018471 297 GVSKCTLCLSNRQD-----P--TATPCGHVFCWNCIMEWC-NEKPECPLCRAPIT 343 (355)
Q Consensus 297 ~~~~C~iC~~~~~~-----p--~~~~CgH~fC~~Ci~~~~-~~~~~CP~Cr~~~~ 343 (355)
....|.||.+..-. + .+-.|+-..|..|..-=. ..+..||.|+....
T Consensus 14 ~~~~c~iCGd~vg~~~~Ge~FVAC~eC~fpvCr~cyeye~~~g~~~cp~c~t~y~ 68 (1044)
T PLN02915 14 DAKTCRVCGDEVGVKEDGQPFVACHVCGFPVCKPCYEYERSEGNQCCPQCNTRYK 68 (1044)
T ss_pred CcchhhccccccCcCCCCCEEEEeccCCCccccchhhhhhhcCCccCCccCCchh
Confidence 45689999987542 2 234688889999984222 24579999988665
No 195
>PLN02400 cellulose synthase
Probab=23.66 E-value=49 Score=36.77 Aligned_cols=47 Identities=17% Similarity=0.444 Sum_probs=32.3
Q ss_pred CCccccccCCCCCC-----C--eEcCCCCccChhHHHH-HHhcCCCCCCCCCCCC
Q 018471 297 GVSKCTLCLSNRQD-----P--TATPCGHVFCWNCIME-WCNEKPECPLCRAPIT 343 (355)
Q Consensus 297 ~~~~C~iC~~~~~~-----p--~~~~CgH~fC~~Ci~~-~~~~~~~CP~Cr~~~~ 343 (355)
....|.||.+..-. + .+-.|+-..|..|..- ....+..||.|+....
T Consensus 35 ~gqiCqICGD~VG~t~dGe~FVAC~eCaFPVCRpCYEYERkeGnq~CPQCkTrYk 89 (1085)
T PLN02400 35 NGQICQICGDDVGVTETGDVFVACNECAFPVCRPCYEYERKDGTQCCPQCKTRYR 89 (1085)
T ss_pred CCceeeecccccCcCCCCCEEEEEccCCCccccchhheecccCCccCcccCCccc
Confidence 34589999987542 2 2446888899999832 1224579999988665
No 196
>PF09986 DUF2225: Uncharacterized protein conserved in bacteria (DUF2225); InterPro: IPR018708 This conserved bacterial family has no known function.
Probab=23.61 E-value=24 Score=31.73 Aligned_cols=52 Identities=15% Similarity=0.224 Sum_probs=27.8
Q ss_pred CCccccccCCCCCCCeEcCC-CC------ccChh--HHHHHHhcCCCCCCCCCCCCCCCce
Q 018471 297 GVSKCTLCLSNRQDPTATPC-GH------VFCWN--CIMEWCNEKPECPLCRAPITHSSLV 348 (355)
Q Consensus 297 ~~~~C~iC~~~~~~p~~~~C-gH------~fC~~--Ci~~~~~~~~~CP~Cr~~~~~~~~~ 348 (355)
....||+|...+....+.+- +. -||.. =+.+..-.-..||.|......++.-
T Consensus 4 k~~~CPvC~~~F~~~~vrs~~~r~~~~d~D~~~~Y~~vnP~~Y~V~vCP~CgyA~~~~~F~ 64 (214)
T PF09986_consen 4 KKITCPVCGKEFKTKKVRSGKIRVIRRDSDFCPRYKGVNPLFYEVWVCPHCGYAAFEEDFE 64 (214)
T ss_pred CceECCCCCCeeeeeEEEcCCceEeeecCCCccccCCCCCeeeeEEECCCCCCcccccccc
Confidence 35799999998875432211 10 01211 1111112224899999887766543
No 197
>cd01407 SIR2-fam SIR2 family of proteins includes silent information regulator 2 (Sir2) enzymes which catalyze NAD+-dependent protein/histone deacetylation, where the acetyl group from the lysine epsilon-amino group is transferred to the ADP-ribose moiety of NAD+, producing nicotinamide and the novel metabolite O-acetyl-ADP-ribose. Sir2 proteins, also known as sirtuins, are found in all eukaryotes and many archaea and prokaryotes and have been shown to regulate gene silencing, DNA repair, metabolic enzymes, and life span. The most-studied function, gene silencing, involves the inactivation of chromosome domains containing key regulatory genes by packaging them into a specialized chromatin structure that is inaccessible to DNA-binding proteins. The oligomerization state of Sir2 appears to be organism-dependent, sometimes occurring as a monomer and sometimes as a multimer.
Probab=23.30 E-value=1.1e+02 Score=27.20 Aligned_cols=35 Identities=23% Similarity=0.497 Sum_probs=18.6
Q ss_pred CeEcCCCCccChhHHHHHHh--cCCCCCCCCCCCCCC
Q 018471 311 PTATPCGHVFCWNCIMEWCN--EKPECPLCRAPITHS 345 (355)
Q Consensus 311 p~~~~CgH~fC~~Ci~~~~~--~~~~CP~Cr~~~~~~ 345 (355)
-.++.|++.+-+.=+..... .-+.||.|+..+.+.
T Consensus 110 ~~C~~C~~~~~~~~~~~~~~~~~~p~C~~Cg~~lrP~ 146 (218)
T cd01407 110 VRCTKCGKEYPRDELQADIDREEVPRCPKCGGLLRPD 146 (218)
T ss_pred ceeCCCcCCCcHHHHhHhhccCCCCcCCCCCCccCCC
Confidence 33445666554432111221 237899998876643
No 198
>COG4098 comFA Superfamily II DNA/RNA helicase required for DNA uptake (late competence protein) [DNA replication, recombination, and repair]
Probab=23.24 E-value=33 Score=33.25 Aligned_cols=31 Identities=32% Similarity=0.843 Sum_probs=24.9
Q ss_pred CCCccccccC-CCCCCCeEcCCCCccChhHHH
Q 018471 296 PGVSKCTLCL-SNRQDPTATPCGHVFCWNCIM 326 (355)
Q Consensus 296 ~~~~~C~iC~-~~~~~p~~~~CgH~fC~~Ci~ 326 (355)
.....|.=|. .....-..+|||..||..|+.
T Consensus 37 ~gk~~C~RC~~~~~~~~~~lp~~~~YCr~Cl~ 68 (441)
T COG4098 37 NGKYRCNRCGNTHIELFAKLPCGCLYCRNCLM 68 (441)
T ss_pred cCcEEehhcCCcchhhhcccccceEeehhhhh
Confidence 4567999888 455566788999999999984
No 199
>PF05605 zf-Di19: Drought induced 19 protein (Di19), zinc-binding; InterPro: IPR008598 This entry consists of several drought induced 19 (Di19) like and RING finger 114 proteins. Di19 has been found to be strongly expressed in both the roots and leaves of Arabidopsis thaliana during progressive drought [], whilst RING finger proteins are thought to play a role in spermatogenesis. The precise function is unknown.
Probab=22.99 E-value=27 Score=23.85 Aligned_cols=10 Identities=40% Similarity=1.235 Sum_probs=6.4
Q ss_pred CCCCCCCCCC
Q 018471 334 ECPLCRAPIT 343 (355)
Q Consensus 334 ~CP~Cr~~~~ 343 (355)
.||+|...+.
T Consensus 33 ~CPiC~~~~~ 42 (54)
T PF05605_consen 33 VCPICSSRVT 42 (54)
T ss_pred cCCCchhhhh
Confidence 5888865443
No 200
>PRK05978 hypothetical protein; Provisional
Probab=22.93 E-value=56 Score=27.65 Aligned_cols=33 Identities=24% Similarity=0.639 Sum_probs=22.9
Q ss_pred CccccccCCCCCCCeEcCCCCccChhHHHHHHhcCCCCCCCCCCCCCC
Q 018471 298 VSKCTLCLSNRQDPTATPCGHVFCWNCIMEWCNEKPECPLCRAPITHS 345 (355)
Q Consensus 298 ~~~C~iC~~~~~~p~~~~CgH~fC~~Ci~~~~~~~~~CP~Cr~~~~~~ 345 (355)
..+||-|.+ |+.| ..+++.+..||.|..++...
T Consensus 33 ~grCP~CG~----------G~LF-----~g~Lkv~~~C~~CG~~~~~~ 65 (148)
T PRK05978 33 RGRCPACGE----------GKLF-----RAFLKPVDHCAACGEDFTHH 65 (148)
T ss_pred cCcCCCCCC----------Cccc-----ccccccCCCccccCCccccC
Confidence 467887765 3334 25667788999999887653
No 201
>KOG3362 consensus Predicted BBOX Zn-finger protein [General function prediction only]
Probab=22.55 E-value=30 Score=28.97 Aligned_cols=31 Identities=23% Similarity=0.629 Sum_probs=23.0
Q ss_pred CCCccccccCCCCCCCeEcCCCCccCh-hHHHH
Q 018471 296 PGVSKCTLCLSNRQDPTATPCGHVFCW-NCIME 327 (355)
Q Consensus 296 ~~~~~C~iC~~~~~~p~~~~CgH~fC~-~Ci~~ 327 (355)
+....|+||. ....-.++.||..||. .|...
T Consensus 116 P~r~fCaVCG-~~S~ysC~~CG~kyCsv~C~~~ 147 (156)
T KOG3362|consen 116 PLRKFCAVCG-YDSKYSCVNCGTKYCSVRCLKT 147 (156)
T ss_pred CcchhhhhcC-CCchhHHHhcCCceeechhhhh
Confidence 4567899998 5556678999998775 47653
No 202
>KOG1815 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=22.51 E-value=31 Score=34.64 Aligned_cols=19 Identities=37% Similarity=0.763 Sum_probs=13.3
Q ss_pred CCeEcCCCCccChhHHHHH
Q 018471 310 DPTATPCGHVFCWNCIMEW 328 (355)
Q Consensus 310 ~p~~~~CgH~fC~~Ci~~~ 328 (355)
.++.-+|||.|||.|..+|
T Consensus 178 ~~v~C~~g~~FC~~C~~~~ 196 (444)
T KOG1815|consen 178 VEVDCGCGHEFCFACGEES 196 (444)
T ss_pred cceeCCCCchhHhhccccc
Confidence 3455578888888887654
No 203
>PLN02248 cellulose synthase-like protein
Probab=22.13 E-value=64 Score=36.00 Aligned_cols=32 Identities=25% Similarity=0.758 Sum_probs=26.6
Q ss_pred CCCCccChhHHHHHHhcCCCCCCCCCCCCCCC
Q 018471 315 PCGHVFCWNCIMEWCNEKPECPLCRAPITHSS 346 (355)
Q Consensus 315 ~CgH~fC~~Ci~~~~~~~~~CP~Cr~~~~~~~ 346 (355)
.|++..|.+|....++....||-|+++....+
T Consensus 149 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 180 (1135)
T PLN02248 149 ECGFKICRDCYIDAVKSGGICPGCKEPYKVTD 180 (1135)
T ss_pred cccchhHHhHhhhhhhcCCCCCCCcccccccc
Confidence 47778899999999888889999998875433
No 204
>COG3492 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=22.12 E-value=37 Score=26.06 Aligned_cols=12 Identities=50% Similarity=1.445 Sum_probs=10.3
Q ss_pred cChhHHHHHHhc
Q 018471 320 FCWNCIMEWCNE 331 (355)
Q Consensus 320 fC~~Ci~~~~~~ 331 (355)
||..|+..|..+
T Consensus 43 FCRNCLs~Wy~e 54 (104)
T COG3492 43 FCRNCLSNWYRE 54 (104)
T ss_pred HHHHHHHHHHHH
Confidence 899999999863
No 205
>KOG3726 consensus Uncharacterized conserved protein [Function unknown]
Probab=22.07 E-value=56 Score=34.31 Aligned_cols=40 Identities=18% Similarity=0.547 Sum_probs=27.0
Q ss_pred CccccccCCCCC----CCeEcCCCCccChhHHHHHHhcCCCCCCCCC
Q 018471 298 VSKCTLCLSNRQ----DPTATPCGHVFCWNCIMEWCNEKPECPLCRA 340 (355)
Q Consensus 298 ~~~C~iC~~~~~----~p~~~~CgH~fC~~Ci~~~~~~~~~CP~Cr~ 340 (355)
...|.+|..+-. -+..+.|+-.||+.|.... ...||.|.-
T Consensus 654 ~r~C~vcq~pedse~~v~rt~~C~~~~C~~c~~~~---~~~~~vC~~ 697 (717)
T KOG3726|consen 654 IRTCKVCQLPEDSETDVCRTTFCYTPYCVACSLDY---ASISEVCGP 697 (717)
T ss_pred HHHHHHhcCCcCccccccCccccCCcchHhhhhhh---hccCcccCc
Confidence 457888876433 1234579999999996553 356888854
No 206
>COG4647 AcxC Acetone carboxylase, gamma subunit [Secondary metabolites biosynthesis, transport, and catabolism]
Probab=22.05 E-value=42 Score=27.52 Aligned_cols=22 Identities=27% Similarity=0.495 Sum_probs=14.7
Q ss_pred ccCCCCCCCeEcCCCCccChhH
Q 018471 303 LCLSNRQDPTATPCGHVFCWNC 324 (355)
Q Consensus 303 iC~~~~~~p~~~~CgH~fC~~C 324 (355)
||.+.-..-+.-.|||.||.+=
T Consensus 62 i~qs~~~rv~rcecghsf~d~r 83 (165)
T COG4647 62 ICQSAQKRVIRCECGHSFGDYR 83 (165)
T ss_pred EEecccccEEEEeccccccChh
Confidence 5666544445568999999753
No 207
>COG1675 TFA1 Transcription initiation factor IIE, alpha subunit [Transcription]
Probab=21.77 E-value=65 Score=28.07 Aligned_cols=34 Identities=18% Similarity=0.298 Sum_probs=21.5
Q ss_pred CCccccccCCCCCCCeEcCCCCccChhHHHHHHhcCCCCCCCCCCCCCC
Q 018471 297 GVSKCTLCLSNRQDPTATPCGHVFCWNCIMEWCNEKPECPLCRAPITHS 345 (355)
Q Consensus 297 ~~~~C~iC~~~~~~p~~~~CgH~fC~~Ci~~~~~~~~~CP~Cr~~~~~~ 345 (355)
.-+.|+.|...+. ..+.....+.||.|+..+...
T Consensus 112 ~~y~C~~~~~r~s---------------fdeA~~~~F~Cp~Cg~~L~~~ 145 (176)
T COG1675 112 NYYVCPNCHVKYS---------------FDEAMELGFTCPKCGEDLEEY 145 (176)
T ss_pred CceeCCCCCCccc---------------HHHHHHhCCCCCCCCchhhhc
Confidence 4577776655443 233344558999999877643
No 208
>KOG0396 consensus Uncharacterized conserved protein [Function unknown]
Probab=21.07 E-value=79 Score=30.77 Aligned_cols=42 Identities=19% Similarity=0.247 Sum_probs=34.6
Q ss_pred CCeEcCCCCccChhHHHHHHhcC-CCCCCCCCCCCCCCceecc
Q 018471 310 DPTATPCGHVFCWNCIMEWCNEK-PECPLCRAPITHSSLVCLY 351 (355)
Q Consensus 310 ~p~~~~CgH~fC~~Ci~~~~~~~-~~CP~Cr~~~~~~~~~~l~ 351 (355)
.|...|=||++...-|..|-... -.||.-.+.+..++++.+|
T Consensus 345 ~P~lfpnG~Vyg~~~L~s~~~~~~i~dP~~~k~f~~~~l~kvy 387 (389)
T KOG0396|consen 345 PPHLFPNGYVYGTKALESLNEDDGIGDPRTKKVFRYSELCKVY 387 (389)
T ss_pred CcccccCceeehhHHHHhhcccCCCcCCCCCccccHHHHHHHh
Confidence 46777999999999999987655 7899999888887777665
No 209
>KOG2042 consensus Ubiquitin fusion degradation protein-2 [Posttranslational modification, protein turnover, chaperones]
Probab=20.38 E-value=1e+02 Score=33.89 Aligned_cols=55 Identities=18% Similarity=0.113 Sum_probs=46.3
Q ss_pred CCCccccccCCCCCCCeEcC-CCCccChhHHHHHHhcCCCCCCCCCCCCCCCceec
Q 018471 296 PGVSKCTLCLSNRQDPTATP-CGHVFCWNCIMEWCNEKPECPLCRAPITHSSLVCL 350 (355)
Q Consensus 296 ~~~~~C~iC~~~~~~p~~~~-CgH~fC~~Ci~~~~~~~~~CP~Cr~~~~~~~~~~l 350 (355)
++++.=|+-...+.+|+.+| -|++.|..=|.+++....+=|.||.+++..++.|.
T Consensus 868 pdef~DPlm~Tlm~dPV~LP~Srv~vDRsti~rhlLs~~tdPFNR~pLt~d~v~pn 923 (943)
T KOG2042|consen 868 PDEFLDPLMSTLMSDPVVLPSSRVTVDRSTIERHLLSDCTDPFNREPLTEDMVSPN 923 (943)
T ss_pred chhhhCccccccCCCCccCCcccccccHHHHHHHHhcCCCCccccccCchhhcCCC
Confidence 45566677778889999998 88999999999998888888999999998887663
No 210
>COG1040 ComFC Predicted amidophosphoribosyltransferases [General function prediction only]
Probab=20.23 E-value=28 Score=31.50 Aligned_cols=50 Identities=20% Similarity=0.339 Sum_probs=30.2
Q ss_pred ccccccCCCCCCCeEcCCCCccChhHHHHHHhcCCCCCCCCCCCC-CCCceeccCCC
Q 018471 299 SKCTLCLSNRQDPTATPCGHVFCWNCIMEWCNEKPECPLCRAPIT-HSSLVCLYHSD 354 (355)
Q Consensus 299 ~~C~iC~~~~~~p~~~~CgH~fC~~Ci~~~~~~~~~CP~Cr~~~~-~~~~~~l~~~~ 354 (355)
..|+.|...+.. .+- +|+.|..+.......|+.|...-. ...++-++.|+
T Consensus 25 ~~C~~C~~~~~~-----~~~-~C~~C~~~l~~~~~~~~~~~~~~~~~~~~~~~~~Y~ 75 (225)
T COG1040 25 GLCSGCQADLPL-----IGN-LCPLCGLPLSSHACRCGECLAKPPPFERLRSLGSYN 75 (225)
T ss_pred CcChhhhhchhH-----HHh-hhHhhhChhccccccCHHHhcCCCcceeEEEEEEcc
Confidence 577777766542 111 788888776555567788855443 24455555554
Done!