Query 018471
Match_columns 355
No_of_seqs 239 out of 1862
Neff 8.0
Searched_HMMs 29240
Date Mon Mar 25 15:47:29 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/018471.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/018471hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 3ng2_A RNF4, snurf, ring finge 99.4 5.1E-14 1.8E-18 103.2 2.5 56 296-351 8-70 (71)
2 2djb_A Polycomb group ring fin 99.4 9.8E-13 3.3E-17 96.8 6.5 57 295-351 12-69 (72)
3 2xeu_A Ring finger protein 4; 99.4 2E-13 6.9E-18 97.7 2.5 55 297-351 2-63 (64)
4 1t1h_A Gspef-atpub14, armadill 99.3 1.1E-12 3.7E-17 98.0 5.4 58 295-352 5-63 (78)
5 2ecw_A Tripartite motif-contai 99.3 5.1E-12 1.7E-16 95.5 8.3 59 295-353 16-80 (85)
6 2d8t_A Dactylidin, ring finger 99.3 5E-13 1.7E-17 98.1 2.4 54 296-349 13-66 (71)
7 2ecy_A TNF receptor-associated 99.3 2.2E-12 7.4E-17 93.2 5.6 52 296-347 13-65 (66)
8 2yur_A Retinoblastoma-binding 99.3 2.4E-12 8.3E-17 95.2 6.0 52 294-345 11-65 (74)
9 2ecv_A Tripartite motif-contai 99.3 5.4E-12 1.8E-16 95.4 7.6 60 295-354 16-81 (85)
10 2ysl_A Tripartite motif-contai 99.3 3.5E-12 1.2E-16 93.8 5.9 53 295-347 17-72 (73)
11 3lrq_A E3 ubiquitin-protein li 99.3 7.3E-13 2.5E-17 104.0 1.9 58 296-353 20-79 (100)
12 2csy_A Zinc finger protein 183 99.3 4.6E-12 1.6E-16 95.3 6.1 49 295-343 12-60 (81)
13 2kre_A Ubiquitin conjugation f 99.3 4.7E-12 1.6E-16 99.3 6.3 58 294-351 25-82 (100)
14 2kr4_A Ubiquitin conjugation f 99.3 3.1E-12 1.1E-16 97.3 5.0 57 295-351 11-67 (85)
15 1wgm_A Ubiquitin conjugation f 99.3 6E-12 2E-16 98.3 6.5 57 295-351 19-76 (98)
16 2egp_A Tripartite motif-contai 99.3 1.7E-12 6E-17 96.9 2.9 58 295-352 9-73 (79)
17 2ect_A Ring finger protein 126 99.2 6.6E-12 2.3E-16 93.7 5.8 55 296-350 13-70 (78)
18 3ztg_A E3 ubiquitin-protein li 99.2 8.4E-12 2.9E-16 96.1 5.7 57 294-350 9-69 (92)
19 1g25_A CDK-activating kinase a 99.2 5.7E-12 2E-16 90.7 4.2 57 298-354 3-65 (65)
20 2ea6_A Ring finger protein 4; 99.2 4.7E-12 1.6E-16 91.9 3.7 50 295-344 12-68 (69)
21 2ct2_A Tripartite motif protei 99.2 9.7E-12 3.3E-16 94.8 5.6 57 295-351 12-75 (88)
22 1chc_A Equine herpes virus-1 r 99.2 2E-11 6.8E-16 88.5 5.4 47 297-343 4-51 (68)
23 2kiz_A E3 ubiquitin-protein li 99.2 2.3E-11 7.9E-16 88.4 5.6 50 295-344 11-63 (69)
24 4ayc_A E3 ubiquitin-protein li 99.2 8.7E-12 3E-16 103.6 3.3 48 298-345 53-100 (138)
25 2ysj_A Tripartite motif-contai 99.2 4.2E-11 1.4E-15 85.5 6.1 44 295-338 17-63 (63)
26 2y43_A E3 ubiquitin-protein li 99.2 1.3E-11 4.6E-16 96.4 3.6 56 296-351 20-76 (99)
27 2ecn_A Ring finger protein 141 99.2 9.6E-12 3.3E-16 90.8 2.4 54 296-350 13-66 (70)
28 1x4j_A Ring finger protein 38; 99.2 1.6E-11 5.6E-16 90.9 3.7 50 296-345 21-73 (75)
29 1iym_A EL5; ring-H2 finger, ub 99.1 3.1E-11 1.1E-15 83.6 4.8 47 297-343 4-54 (55)
30 2ecm_A Ring finger and CHY zin 99.1 2.9E-11 9.9E-16 83.7 4.4 47 297-343 4-54 (55)
31 1jm7_A BRCA1, breast cancer ty 99.1 4.1E-11 1.4E-15 95.5 5.4 56 297-352 20-78 (112)
32 2ep4_A Ring finger protein 24; 99.1 4.2E-11 1.4E-15 88.3 4.8 49 296-344 13-64 (74)
33 3fl2_A E3 ubiquitin-protein li 99.1 2.4E-11 8.3E-16 98.9 3.8 53 297-349 51-105 (124)
34 2l0b_A E3 ubiquitin-protein li 99.1 3.2E-11 1.1E-15 92.8 4.0 49 296-344 38-89 (91)
35 2ckl_A Polycomb group ring fin 99.1 3.8E-11 1.3E-15 95.4 4.2 50 296-345 13-63 (108)
36 2ecj_A Tripartite motif-contai 99.1 8.5E-11 2.9E-15 82.2 5.2 43 296-338 13-58 (58)
37 4ap4_A E3 ubiquitin ligase RNF 99.1 3.2E-11 1.1E-15 98.8 3.2 57 296-352 5-68 (133)
38 3hct_A TNF receptor-associated 99.1 4.3E-11 1.5E-15 96.6 3.3 55 295-349 15-70 (118)
39 2vje_A E3 ubiquitin-protein li 99.1 6.5E-11 2.2E-15 85.0 3.3 54 297-352 7-63 (64)
40 2c2l_A CHIP, carboxy terminus 99.0 9.9E-11 3.4E-15 108.0 4.9 57 295-351 205-262 (281)
41 1z6u_A NP95-like ring finger p 99.0 9.2E-11 3.2E-15 98.7 4.2 53 297-349 77-131 (150)
42 4ap4_A E3 ubiquitin ligase RNF 99.0 3.6E-11 1.2E-15 98.5 1.5 56 296-351 70-132 (133)
43 2yu4_A E3 SUMO-protein ligase 99.0 1.2E-10 4.1E-15 90.2 3.6 56 296-351 5-70 (94)
44 2vje_B MDM4 protein; proto-onc 99.0 8.8E-11 3E-15 84.0 2.5 54 297-352 6-62 (63)
45 1rmd_A RAG1; V(D)J recombinati 99.0 1.1E-10 3.6E-15 93.9 3.2 53 297-349 22-75 (116)
46 2f42_A STIP1 homology and U-bo 99.0 1.5E-10 5.1E-15 99.7 4.2 57 295-351 103-160 (179)
47 3l11_A E3 ubiquitin-protein li 99.0 5E-11 1.7E-15 95.7 0.9 49 296-344 13-62 (115)
48 1v87_A Deltex protein 2; ring- 99.0 2.4E-10 8.3E-15 91.4 4.6 48 297-344 24-94 (114)
49 2ecl_A Ring-box protein 2; RNF 99.0 2E-10 7E-15 86.3 3.4 51 297-347 14-79 (81)
50 1bor_A Transcription factor PM 99.0 1.7E-10 5.9E-15 80.4 2.4 47 296-345 4-50 (56)
51 1jm7_B BARD1, BRCA1-associated 99.0 1.4E-10 4.7E-15 93.5 2.2 54 296-351 20-74 (117)
52 2ckl_B Ubiquitin ligase protei 99.0 3.1E-10 1.1E-14 97.0 4.3 49 296-344 52-102 (165)
53 2y1n_A E3 ubiquitin-protein li 99.0 3E-10 1E-14 108.7 4.6 151 188-350 225-385 (389)
54 2bay_A PRE-mRNA splicing facto 99.0 2.3E-10 8E-15 81.1 2.8 55 298-352 3-58 (61)
55 4ic3_A E3 ubiquitin-protein li 98.9 2.2E-10 7.7E-15 84.6 1.8 49 297-351 23-72 (74)
56 1e4u_A Transcriptional repress 98.9 1.1E-09 3.9E-14 81.6 5.5 53 296-348 9-66 (78)
57 2ea5_A Cell growth regulator w 98.9 2E-09 7E-14 78.0 6.3 52 295-352 12-64 (68)
58 3knv_A TNF receptor-associated 98.9 3.8E-10 1.3E-14 93.9 1.1 49 295-343 28-77 (141)
59 3dpl_R Ring-box protein 1; ubi 98.8 1.7E-09 5.7E-14 85.5 4.0 48 297-344 36-101 (106)
60 3hcs_A TNF receptor-associated 98.8 1.4E-09 4.7E-14 93.4 3.3 55 295-349 15-70 (170)
61 2ecg_A Baculoviral IAP repeat- 98.8 1.9E-09 6.6E-14 79.6 3.6 49 297-351 24-73 (75)
62 4a0k_B E3 ubiquitin-protein li 98.7 3.2E-09 1.1E-13 85.2 0.6 50 297-346 47-114 (117)
63 2yho_A E3 ubiquitin-protein li 98.6 5.9E-09 2E-13 77.9 1.6 49 297-351 17-66 (79)
64 3htk_C E3 SUMO-protein ligase 98.6 7.5E-09 2.6E-13 93.5 2.5 55 296-350 179-238 (267)
65 3t6p_A Baculoviral IAP repeat- 98.5 2E-08 6.7E-13 95.5 1.8 51 296-352 293-344 (345)
66 2d8s_A Cellular modulator of i 98.5 8.6E-08 2.9E-12 71.6 4.9 49 296-344 13-70 (80)
67 1wim_A KIAA0161 protein; ring 98.3 6.9E-08 2.4E-12 74.4 0.2 52 297-348 4-70 (94)
68 2ct0_A Non-SMC element 1 homol 98.1 3.2E-06 1.1E-10 61.9 5.4 48 297-344 14-64 (74)
69 3vk6_A E3 ubiquitin-protein li 98.1 2.2E-06 7.4E-11 65.6 3.3 45 300-344 3-49 (101)
70 1vyx_A ORF K3, K3RING; zinc-bi 97.8 1.7E-05 5.7E-10 55.7 4.0 49 296-344 4-59 (60)
71 3k1l_B Fancl; UBC, ring, RWD, 97.7 8.9E-06 3E-10 76.0 1.9 49 296-344 306-373 (381)
72 3nw0_A Non-structural maintena 96.0 0.0055 1.9E-07 54.9 4.6 48 298-345 180-230 (238)
73 3m62_A Ubiquitin conjugation f 95.6 0.0073 2.5E-07 63.7 4.1 58 294-351 887-945 (968)
74 2jun_A Midline-1; B-BOX, TRIM, 93.3 0.043 1.5E-06 41.9 2.7 31 297-327 2-35 (101)
75 2ko5_A Ring finger protein Z; 92.9 0.19 6.3E-06 37.7 5.3 50 295-346 25-75 (99)
76 2cs3_A Protein C14ORF4, MY039 92.5 0.2 7E-06 36.3 4.9 35 296-330 13-51 (93)
77 2lri_C Autoimmune regulator; Z 86.1 0.79 2.7E-05 32.1 3.9 48 296-343 10-61 (66)
78 1wd2_A Ariadne-1 protein homol 80.9 0.33 1.1E-05 33.4 0.1 34 298-331 6-47 (60)
79 3i2d_A E3 SUMO-protein ligase 79.1 1.3 4.3E-05 41.9 3.5 51 297-348 248-304 (371)
80 4fo9_A E3 SUMO-protein ligase 74.5 2.1 7E-05 40.3 3.5 51 297-348 214-270 (360)
81 1wil_A KIAA1045 protein; ring 72.8 5.5 0.00019 29.1 4.6 33 295-328 12-47 (89)
82 2fiy_A Protein FDHE homolog; F 71.6 0.37 1.3E-05 44.6 -2.3 46 296-341 180-231 (309)
83 1z2q_A LM5-1; membrane protein 70.8 4 0.00014 29.8 3.7 31 297-327 20-54 (84)
84 1z60_A TFIIH basal transcripti 70.3 2.3 7.9E-05 29.1 2.1 40 299-338 16-58 (59)
85 2d8v_A Zinc finger FYVE domain 68.2 3.3 0.00011 28.8 2.5 33 296-329 6-39 (67)
86 1m3v_A FLIN4, fusion of the LI 67.5 3.1 0.00011 32.5 2.7 51 297-347 31-84 (122)
87 1x4u_A Zinc finger, FYVE domai 65.9 3.3 0.00011 30.3 2.3 30 297-326 13-46 (84)
88 1joc_A EEA1, early endosomal a 65.4 2.3 7.9E-05 33.7 1.5 29 298-326 69-101 (125)
89 1mm2_A MI2-beta; PHD, zinc fin 64.6 2.6 8.9E-05 28.8 1.5 47 296-342 7-57 (61)
90 2yw8_A RUN and FYVE domain-con 64.2 3.1 0.00011 30.3 1.9 30 297-326 18-51 (82)
91 1y02_A CARP2, FYVE-ring finger 61.9 3.4 0.00012 32.5 1.9 42 297-338 18-63 (120)
92 1dvp_A HRS, hepatocyte growth 60.3 3 0.0001 36.3 1.4 29 298-326 161-193 (220)
93 3t7l_A Zinc finger FYVE domain 59.9 3.5 0.00012 30.6 1.5 30 298-327 20-53 (90)
94 1vfy_A Phosphatidylinositol-3- 59.4 4 0.00014 28.9 1.7 28 299-326 12-43 (73)
95 3zyq_A Hepatocyte growth facto 59.0 4.6 0.00016 35.3 2.4 30 298-327 164-197 (226)
96 3mpx_A FYVE, rhogef and PH dom 58.3 2.1 7.1E-05 41.1 0.0 46 297-342 374-430 (434)
97 2l5u_A Chromodomain-helicase-D 57.8 3.7 0.00013 28.1 1.2 45 296-340 9-57 (61)
98 2gmg_A Hypothetical protein PF 57.7 2.2 7.4E-05 32.7 0.0 30 309-343 66-95 (105)
99 1wfk_A Zinc finger, FYVE domai 57.4 5.6 0.00019 29.4 2.3 31 297-327 8-42 (88)
100 1x64_A Alpha-actinin-2 associa 55.3 22 0.00076 25.6 5.4 41 297-345 24-64 (89)
101 3u5n_A E3 ubiquitin-protein li 54.2 2.5 8.6E-05 36.4 -0.1 46 297-342 6-55 (207)
102 1x62_A C-terminal LIM domain p 52.9 17 0.00058 25.6 4.2 38 298-343 15-52 (79)
103 4g9i_A Hydrogenase maturation 51.7 5 0.00017 41.8 1.6 49 294-342 102-188 (772)
104 1fp0_A KAP-1 corepressor; PHD 51.5 8.5 0.00029 28.5 2.4 46 296-341 23-72 (88)
105 3o36_A Transcription intermedi 51.1 5 0.00017 33.8 1.2 45 298-342 4-52 (184)
106 2cor_A Pinch protein; LIM doma 50.9 19 0.00064 25.4 4.2 38 299-344 16-53 (79)
107 1weo_A Cellulose synthase, cat 50.9 19 0.00066 26.5 4.1 47 297-343 15-69 (93)
108 2pv0_B DNA (cytosine-5)-methyl 48.4 17 0.00057 34.4 4.5 46 296-341 91-148 (386)
109 3ttc_A HYPF, transcriptional r 48.3 6 0.00021 40.3 1.5 49 294-342 13-99 (657)
110 3vth_A Hydrogenase maturation 47.4 7.6 0.00026 40.3 2.1 49 294-342 107-193 (761)
111 2d8x_A Protein pinch; LIM doma 47.2 15 0.00052 25.0 3.1 32 297-328 30-62 (70)
112 2lbm_A Transcriptional regulat 46.1 18 0.00062 29.2 3.8 45 296-340 61-116 (142)
113 2xjy_A Rhombotin-2; oncoprotei 44.7 14 0.00047 28.8 2.8 49 297-345 28-79 (131)
114 2l43_A N-teminal domain from h 43.1 4.7 0.00016 29.8 -0.2 53 295-347 22-81 (88)
115 3ql9_A Transcriptional regulat 42.7 18 0.0006 28.7 3.1 45 296-340 55-110 (129)
116 2dar_A PDZ and LIM domain prot 42.2 22 0.00076 25.6 3.5 40 298-345 25-64 (90)
117 1wig_A KIAA1808 protein; LIM d 42.2 23 0.0008 24.5 3.5 32 297-328 30-63 (73)
118 2rgt_A Fusion of LIM/homeobox 41.4 35 0.0012 27.8 5.0 50 296-347 31-80 (169)
119 1wyh_A SLIM 2, skeletal muscle 41.4 24 0.00081 24.1 3.4 31 297-327 32-63 (72)
120 1nyp_A Pinch protein; LIM doma 41.2 17 0.00057 24.5 2.5 25 300-324 7-31 (66)
121 2d8z_A Four and A half LIM dom 39.1 26 0.00088 23.8 3.3 31 297-327 30-61 (70)
122 1x4l_A Skeletal muscle LIM-pro 38.9 37 0.0013 23.1 4.1 28 298-325 35-63 (72)
123 1f62_A Transcription factor WS 38.4 15 0.00052 23.6 1.8 41 300-340 2-49 (51)
124 1v6g_A Actin binding LIM prote 38.4 20 0.00068 25.2 2.7 38 300-345 17-54 (81)
125 3c5k_A HD6, histone deacetylas 37.1 14 0.00049 28.4 1.7 26 298-323 24-49 (109)
126 1x68_A FHL5 protein; four-and- 36.6 27 0.00091 24.2 3.1 10 300-309 7-16 (76)
127 2lv9_A Histone-lysine N-methyl 36.5 14 0.00047 27.7 1.5 43 297-340 27-75 (98)
128 2cuq_A Four and A half LIM dom 36.4 32 0.0011 23.9 3.5 29 298-326 41-70 (80)
129 1rut_X Flinc4, fusion protein 36.3 8.5 0.00029 32.3 0.4 49 297-345 31-82 (188)
130 2cur_A Skeletal muscle LIM-pro 36.1 31 0.0011 23.3 3.3 32 297-328 30-62 (69)
131 2jmo_A Parkin; IBR, E3 ligase, 36.0 3.1 0.00011 30.1 -2.1 16 315-330 55-70 (80)
132 2yql_A PHD finger protein 21A; 35.6 3.3 0.00011 27.7 -1.9 44 296-339 7-54 (56)
133 1x63_A Skeletal muscle LIM-pro 35.6 35 0.0012 23.9 3.6 37 300-344 17-55 (82)
134 3fyb_A Protein of unknown func 35.6 15 0.0005 27.7 1.5 11 320-330 42-52 (104)
135 2o35_A Hypothetical protein DU 35.4 15 0.0005 27.7 1.5 11 320-330 43-53 (105)
136 1x6a_A LIMK-2, LIM domain kina 34.6 28 0.00095 24.4 2.9 31 297-327 40-73 (81)
137 2co8_A NEDD9 interacting prote 34.5 47 0.0016 23.5 4.2 42 297-346 14-56 (82)
138 2jtn_A LIM domain-binding prot 34.4 35 0.0012 28.2 3.9 48 297-346 86-133 (182)
139 2cu8_A Cysteine-rich protein 2 34.3 24 0.00082 24.4 2.5 10 299-308 37-46 (76)
140 1xwh_A Autoimmune regulator; P 34.1 4.8 0.00017 27.9 -1.3 45 296-340 6-54 (66)
141 2xqn_T Testin, TESS; metal-bin 34.0 33 0.0011 26.3 3.5 47 297-345 29-76 (126)
142 2k16_A Transcription initiatio 33.5 9.3 0.00032 27.0 0.1 49 296-344 16-71 (75)
143 3a1b_A DNA (cytosine-5)-methyl 33.1 31 0.0011 28.3 3.2 44 297-340 78-133 (159)
144 1x4k_A Skeletal muscle LIM-pro 33.0 32 0.0011 23.4 2.9 30 298-327 33-63 (72)
145 1x61_A Thyroid receptor intera 30.7 60 0.002 21.9 4.1 33 297-329 32-65 (72)
146 3mjh_B Early endosome antigen 30.7 7.3 0.00025 23.4 -0.7 14 298-311 5-18 (34)
147 1x3h_A Leupaxin; paxillin fami 30.3 31 0.001 24.1 2.5 29 298-326 41-70 (80)
148 2d8y_A Eplin protein; LIM doma 30.1 73 0.0025 22.8 4.7 32 297-328 41-73 (91)
149 1g47_A Pinch protein; LIM doma 29.6 41 0.0014 23.1 3.1 38 298-343 11-50 (77)
150 2puy_A PHD finger protein 21A; 29.1 7.3 0.00025 26.3 -1.1 44 297-340 4-51 (60)
151 2dlo_A Thyroid receptor-intera 29.0 30 0.001 24.3 2.3 29 298-326 41-71 (81)
152 2dj7_A Actin-binding LIM prote 28.0 49 0.0017 23.3 3.3 38 298-343 15-53 (80)
153 2uzg_A Ubiquitin carboxyl-term 27.5 27 0.00093 26.0 1.9 26 298-323 25-53 (97)
154 1zbd_B Rabphilin-3A; G protein 27.2 16 0.00056 29.1 0.6 29 297-325 54-87 (134)
155 2egq_A FHL1 protein; LIM domai 26.3 40 0.0014 23.2 2.5 39 299-345 16-59 (77)
156 2lcq_A Putative toxin VAPC6; P 26.0 19 0.00064 29.5 0.7 10 333-342 149-158 (165)
157 2ehe_A Four and A half LIM dom 25.5 60 0.0021 22.6 3.4 37 300-344 17-55 (82)
158 2ysm_A Myeloid/lymphoid or mix 25.5 23 0.00079 26.9 1.1 34 296-329 5-41 (111)
159 2yt5_A Metal-response element- 25.4 7.8 0.00027 26.6 -1.5 48 296-343 4-63 (66)
160 2l3k_A Rhombotin-2, linker, LI 25.1 52 0.0018 25.2 3.2 50 296-347 34-85 (123)
161 2jrp_A Putative cytoplasmic pr 24.8 3.8 0.00013 29.9 -3.3 17 332-348 51-67 (81)
162 2a20_A Regulating synaptic mem 24.6 18 0.0006 24.6 0.2 38 296-343 7-44 (62)
163 1weu_A Inhibitor of growth fam 24.0 1.7E+02 0.0059 21.4 5.7 43 297-343 35-87 (91)
164 1wg2_A Zinc finger (AN1-like) 23.8 99 0.0034 21.2 3.9 28 297-324 14-42 (64)
165 2zet_C Melanophilin; complex, 23.7 26 0.0009 28.6 1.2 29 297-325 67-100 (153)
166 2iyb_E Testin, TESS, TES; LIM 23.7 32 0.0011 23.0 1.5 10 299-308 33-42 (65)
167 2l4z_A DNA endonuclease RBBP8, 23.3 87 0.003 24.1 4.2 39 297-343 60-99 (123)
168 1iml_A CRIP, cysteine rich int 23.3 37 0.0013 23.4 1.8 45 296-342 25-71 (76)
169 1wen_A Inhibitor of growth fam 23.2 1.2E+02 0.004 21.1 4.4 43 297-343 15-67 (71)
170 2g45_A Ubiquitin carboxyl-term 23.2 42 0.0014 26.5 2.3 26 298-323 34-59 (129)
171 1x4w_A Hypothetical protein FL 21.0 48 0.0016 23.0 1.9 29 296-324 13-45 (67)
172 3pwf_A Rubrerythrin; non heme 20.8 30 0.001 28.7 1.0 8 334-341 155-162 (170)
No 1
>3ng2_A RNF4, snurf, ring finger protein 4; ring domain, E3 ligase, ubiquitylation, sumoylation, zinc-FI metal binding protein; 1.80A {Rattus norvegicus}
Probab=99.41 E-value=5.1e-14 Score=103.16 Aligned_cols=56 Identities=32% Similarity=0.835 Sum_probs=51.9
Q ss_pred CCCccccccCCCCCCC-------eEcCCCCccChhHHHHHHhcCCCCCCCCCCCCCCCceecc
Q 018471 296 PGVSKCTLCLSNRQDP-------TATPCGHVFCWNCIMEWCNEKPECPLCRAPITHSSLVCLY 351 (355)
Q Consensus 296 ~~~~~C~iC~~~~~~p-------~~~~CgH~fC~~Ci~~~~~~~~~CP~Cr~~~~~~~~~~l~ 351 (355)
.++..|+||++.+.+| +.++|||+||..||..|+..+..||.||+++..++++++|
T Consensus 8 ~~~~~C~IC~~~~~~~~~~~~~~~~~~CgH~fc~~Ci~~~~~~~~~CP~Cr~~~~~~~~~~~~ 70 (71)
T 3ng2_A 8 SGTVSCPICMDGYSEIVQNGRLIVSTECGHVFCSQCLRDSLKNANTCPTCRKKINHKRYHPIY 70 (71)
T ss_dssp TTCCBCTTTCCBHHHHHTTTCCEEECTTSCEEEHHHHHHHHHHCSBCTTTCCBCCCCSCCCCC
T ss_pred CCCCCCcccChhhhccccccCCeEeCCCCChHhHHHHHHHHHcCCCCCCCCCccChhheeecc
Confidence 4578999999998776 8889999999999999999889999999999999999987
No 2
>2djb_A Polycomb group ring finger protein 6; PCGF6, ring domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.36 E-value=9.8e-13 Score=96.77 Aligned_cols=57 Identities=23% Similarity=0.491 Sum_probs=50.9
Q ss_pred CCCCccccccCCCCCCCeEc-CCCCccChhHHHHHHhcCCCCCCCCCCCCCCCceecc
Q 018471 295 APGVSKCTLCLSNRQDPTAT-PCGHVFCWNCIMEWCNEKPECPLCRAPITHSSLVCLY 351 (355)
Q Consensus 295 ~~~~~~C~iC~~~~~~p~~~-~CgH~fC~~Ci~~~~~~~~~CP~Cr~~~~~~~~~~l~ 351 (355)
..+...|+||++.+.+|+.+ +|||+||..||..|+.....||.||+++...+++..-
T Consensus 12 ~~~~~~C~IC~~~~~~p~~~~~CgH~fC~~Ci~~~~~~~~~CP~Cr~~~~~~~~~~~~ 69 (72)
T 2djb_A 12 LTPYILCSICKGYLIDATTITECLHTFCKSCIVRHFYYSNRCPKCNIVVHQTQPLSGP 69 (72)
T ss_dssp CCGGGSCTTTSSCCSSCEECSSSCCEECHHHHHHHHHHCSSCTTTCCCCCSSCSCCCC
T ss_pred cCCCCCCCCCChHHHCcCEECCCCCHHHHHHHHHHHHcCCcCCCcCcccCcccccccC
Confidence 35678999999999999987 9999999999999998889999999999988776543
No 3
>2xeu_A Ring finger protein 4; transcription, zinc-finger, metal-binding; HET: SUC; 1.50A {Homo sapiens}
Probab=99.35 E-value=2e-13 Score=97.73 Aligned_cols=55 Identities=31% Similarity=0.821 Sum_probs=50.7
Q ss_pred CCccccccCCCCCCC-------eEcCCCCccChhHHHHHHhcCCCCCCCCCCCCCCCceecc
Q 018471 297 GVSKCTLCLSNRQDP-------TATPCGHVFCWNCIMEWCNEKPECPLCRAPITHSSLVCLY 351 (355)
Q Consensus 297 ~~~~C~iC~~~~~~p-------~~~~CgH~fC~~Ci~~~~~~~~~CP~Cr~~~~~~~~~~l~ 351 (355)
+...|+||++.+.++ +.++|||+||..|+..|+..+..||.||.++..++++++|
T Consensus 2 ~~~~C~IC~~~~~~~~~~~~~~~~~~CgH~fc~~Ci~~~~~~~~~CP~Cr~~~~~~~~~~~~ 63 (64)
T 2xeu_A 2 AMVSCPICMDGYSEIVQNGRLIVSTECGHVFCSQCLRDSLKNANTCPTCRKKINHKRYHPIY 63 (64)
T ss_dssp CCCBCTTTCCBHHHHHHTTCCEEEETTSCEEEHHHHHHHHHHCSBCTTTCCBCTTTCEEECC
T ss_pred CCCCCCccChhhhCccccCCCEEeCCCCCchhHHHHHHHHHcCCCCCCCCccCCccceeeee
Confidence 357899999988766 7889999999999999999899999999999999999997
No 4
>1t1h_A Gspef-atpub14, armadillo repeat containing protein; ubiquitin ligase, E3 ligase, U-BOX,; NMR {Arabidopsis thaliana} SCOP: g.44.1.2
Probab=99.33 E-value=1.1e-12 Score=97.99 Aligned_cols=58 Identities=22% Similarity=0.517 Sum_probs=52.3
Q ss_pred CCCCccccccCCCCCCCeEcCCCCccChhHHHHHHhc-CCCCCCCCCCCCCCCceeccC
Q 018471 295 APGVSKCTLCLSNRQDPTATPCGHVFCWNCIMEWCNE-KPECPLCRAPITHSSLVCLYH 352 (355)
Q Consensus 295 ~~~~~~C~iC~~~~~~p~~~~CgH~fC~~Ci~~~~~~-~~~CP~Cr~~~~~~~~~~l~~ 352 (355)
..+...|+||++.+.+|+.++|||+||..||..|+.. ...||.||.++...++++.+.
T Consensus 5 ~~~~~~C~IC~~~~~~Pv~~~CgH~fc~~Ci~~~~~~~~~~CP~C~~~~~~~~l~~n~~ 63 (78)
T 1t1h_A 5 FPEYFRCPISLELMKDPVIVSTGQTYERSSIQKWLDAGHKTCPKSQETLLHAGLTPNYV 63 (78)
T ss_dssp CSSSSSCTTTSCCCSSEEEETTTEEEEHHHHHHHHTTTCCBCTTTCCBCSSCCCEECTT
T ss_pred CcccCCCCCccccccCCEEcCCCCeecHHHHHHHHHHCcCCCCCCcCCCChhhCccCHH
Confidence 3567899999999999999999999999999999986 789999999999888887653
No 5
>2ecw_A Tripartite motif-containing protein 30; metal binding protein, structural genomics, NPPSFA; NMR {Mus musculus}
Probab=99.31 E-value=5.1e-12 Score=95.51 Aligned_cols=59 Identities=31% Similarity=0.703 Sum_probs=52.8
Q ss_pred CCCCccccccCCCCCCCeEcCCCCccChhHHHHHHhc------CCCCCCCCCCCCCCCceeccCC
Q 018471 295 APGVSKCTLCLSNRQDPTATPCGHVFCWNCIMEWCNE------KPECPLCRAPITHSSLVCLYHS 353 (355)
Q Consensus 295 ~~~~~~C~iC~~~~~~p~~~~CgH~fC~~Ci~~~~~~------~~~CP~Cr~~~~~~~~~~l~~~ 353 (355)
..+...|+||++.+.+|+.++|||.||..|+..|+.. ...||.||.++...++.+.+..
T Consensus 16 ~~~~~~C~IC~~~~~~p~~~~CgH~fC~~Ci~~~~~~~~~~~~~~~CP~Cr~~~~~~~~~~n~~l 80 (85)
T 2ecw_A 16 IKEEVTCPICLELLKEPVSADCNHSFCRACITLNYESNRNTDGKGNCPVCRVPYPFGNLKPNLHV 80 (85)
T ss_dssp CCTTTSCTTTCSCCSSCEECTTSCCBCHHHHHHHHHHSBCTTSCBCCTTTCCCCCTTCCEECSCC
T ss_pred CccCCCCcCCChhhCcceeCCCCCHHHHHHHHHHHHhccCCCCCCCCCCCCCcCCHHhCCcCHHH
Confidence 3467899999999999999999999999999999976 6799999999999888887654
No 6
>2d8t_A Dactylidin, ring finger protein 146; RNF146, ring domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.31 E-value=5e-13 Score=98.08 Aligned_cols=54 Identities=33% Similarity=0.739 Sum_probs=48.5
Q ss_pred CCCccccccCCCCCCCeEcCCCCccChhHHHHHHhcCCCCCCCCCCCCCCCcee
Q 018471 296 PGVSKCTLCLSNRQDPTATPCGHVFCWNCIMEWCNEKPECPLCRAPITHSSLVC 349 (355)
Q Consensus 296 ~~~~~C~iC~~~~~~p~~~~CgH~fC~~Ci~~~~~~~~~CP~Cr~~~~~~~~~~ 349 (355)
.+...|+||++.+.+|+.++|||+||..||..|+.....||+||..+...+++.
T Consensus 13 ~~~~~C~IC~~~~~~~~~~~CgH~fC~~Ci~~~~~~~~~CP~Cr~~~~~~~~~~ 66 (71)
T 2d8t_A 13 LTVPECAICLQTCVHPVSLPCKHVFCYLCVKGASWLGKRCALCRQEIPEDFLDS 66 (71)
T ss_dssp SSCCBCSSSSSBCSSEEEETTTEEEEHHHHHHCTTCSSBCSSSCCBCCHHHHSC
T ss_pred CCCCCCccCCcccCCCEEccCCCHHHHHHHHHHHHCCCcCcCcCchhCHhhccC
Confidence 457899999999999999999999999999999998899999999998765543
No 7
>2ecy_A TNF receptor-associated factor 3; metal binding protein, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.30 E-value=2.2e-12 Score=93.20 Aligned_cols=52 Identities=29% Similarity=0.694 Sum_probs=47.0
Q ss_pred CCCccccccCCCCCCCeEcCCCCccChhHHHHHHh-cCCCCCCCCCCCCCCCc
Q 018471 296 PGVSKCTLCLSNRQDPTATPCGHVFCWNCIMEWCN-EKPECPLCRAPITHSSL 347 (355)
Q Consensus 296 ~~~~~C~iC~~~~~~p~~~~CgH~fC~~Ci~~~~~-~~~~CP~Cr~~~~~~~~ 347 (355)
.+...|+||++.+.+|+.++|||+||..||..|+. ....||.||+++..+++
T Consensus 13 ~~~~~C~IC~~~~~~p~~~~CgH~fC~~Ci~~~~~~~~~~CP~Cr~~~~~~~i 65 (66)
T 2ecy_A 13 EDKYKCEKCHLVLCSPKQTECGHRFCESCMAALLSSSSPKCTACQESIVKDKV 65 (66)
T ss_dssp CCCEECTTTCCEESSCCCCSSSCCCCHHHHHHHHTTSSCCCTTTCCCCCTTTC
T ss_pred CcCCCCCCCChHhcCeeECCCCCHHHHHHHHHHHHhCcCCCCCCCcCCChhhc
Confidence 45789999999999999999999999999999994 56799999999987765
No 8
>2yur_A Retinoblastoma-binding protein 6; P53-associated cellular protein of testis, proliferation potential-related protein, protein P2P-R; NMR {Homo sapiens}
Probab=99.30 E-value=2.4e-12 Score=95.20 Aligned_cols=52 Identities=27% Similarity=0.613 Sum_probs=45.4
Q ss_pred CCCCCccccccCCCCCCCeEcC-CCCccChhHHHHHHhcC--CCCCCCCCCCCCC
Q 018471 294 AAPGVSKCTLCLSNRQDPTATP-CGHVFCWNCIMEWCNEK--PECPLCRAPITHS 345 (355)
Q Consensus 294 ~~~~~~~C~iC~~~~~~p~~~~-CgH~fC~~Ci~~~~~~~--~~CP~Cr~~~~~~ 345 (355)
...+...|+||++.+.+|+.++ |||.||..||..|+... ..||.||+++...
T Consensus 11 ~~~~~~~C~IC~~~~~~p~~~~~CgH~fC~~Ci~~~~~~~~~~~CP~Cr~~~~~~ 65 (74)
T 2yur_A 11 PIPDELLCLICKDIMTDAVVIPCCGNSYCDECIRTALLESDEHTCPTCHQNDVSP 65 (74)
T ss_dssp CSCGGGSCSSSCCCCTTCEECSSSCCEECTTHHHHHHHHSSSSCCSSSCCSSCCT
T ss_pred cCCCCCCCcCCChHHhCCeEcCCCCCHHHHHHHHHHHHhcCCCcCCCCCCcCCCc
Confidence 3456789999999999999999 99999999999999755 6999999986543
No 9
>2ecv_A Tripartite motif-containing protein 5; metal binding protein, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.29 E-value=5.4e-12 Score=95.35 Aligned_cols=60 Identities=25% Similarity=0.622 Sum_probs=53.2
Q ss_pred CCCCccccccCCCCCCCeEcCCCCccChhHHHHHHhc------CCCCCCCCCCCCCCCceeccCCC
Q 018471 295 APGVSKCTLCLSNRQDPTATPCGHVFCWNCIMEWCNE------KPECPLCRAPITHSSLVCLYHSD 354 (355)
Q Consensus 295 ~~~~~~C~iC~~~~~~p~~~~CgH~fC~~Ci~~~~~~------~~~CP~Cr~~~~~~~~~~l~~~~ 354 (355)
..+...|+||++.+.+|+.++|||.||..|+..|+.. ...||.||..+...++.+.+..+
T Consensus 16 ~~~~~~C~IC~~~~~~p~~~~CgH~fC~~Ci~~~~~~~~~~~~~~~CP~Cr~~~~~~~~~~n~~l~ 81 (85)
T 2ecv_A 16 VKEEVTCPICLELLTQPLSLDCGHSFCQACLTANHKKSMLDKGESSCPVCRISYQPENIRPNRHVA 81 (85)
T ss_dssp CCCCCCCTTTCSCCSSCBCCSSSCCBCTTHHHHHHHHHHHTTSCCCCTTTCCSSCSSSCCCSCCCC
T ss_pred ccCCCCCCCCCcccCCceeCCCCCHHHHHHHHHHHHHhhcCCCCCcCCCCCCccCHHhcCccHHHH
Confidence 3467899999999999999999999999999999876 68999999999998888876543
No 10
>2ysl_A Tripartite motif-containing protein 31; ring-type zinc finger domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.28 E-value=3.5e-12 Score=93.81 Aligned_cols=53 Identities=30% Similarity=0.770 Sum_probs=47.3
Q ss_pred CCCCccccccCCCCCCCeEcCCCCccChhHHHHHHh---cCCCCCCCCCCCCCCCc
Q 018471 295 APGVSKCTLCLSNRQDPTATPCGHVFCWNCIMEWCN---EKPECPLCRAPITHSSL 347 (355)
Q Consensus 295 ~~~~~~C~iC~~~~~~p~~~~CgH~fC~~Ci~~~~~---~~~~CP~Cr~~~~~~~~ 347 (355)
..+...|+||++.+.+|+.++|||+||..||..|+. ....||.||+++..+++
T Consensus 17 ~~~~~~C~IC~~~~~~~~~~~CgH~fC~~Ci~~~~~~~~~~~~CP~Cr~~~~~~~~ 72 (73)
T 2ysl_A 17 LQEEVICPICLDILQKPVTIDCGHNFCLKCITQIGETSCGFFKCPLCKTSVRKNAI 72 (73)
T ss_dssp CCCCCBCTTTCSBCSSEEECTTCCEEEHHHHHHHCSSSCSCCCCSSSCCCCCCCCC
T ss_pred CccCCEeccCCcccCCeEEcCCCChhhHHHHHHHHHcCCCCCCCCCCCCcCCcccC
Confidence 356789999999999999999999999999999996 45699999999987765
No 11
>3lrq_A E3 ubiquitin-protein ligase TRIM37; structural genomics, PSI-2, protein structure initiative, northeast structural genomics consortium, NESG; HET: MSE; 2.29A {Homo sapiens}
Probab=99.28 E-value=7.3e-13 Score=103.96 Aligned_cols=58 Identities=31% Similarity=0.822 Sum_probs=52.1
Q ss_pred CCCccccccCCCCCCCeE-cCCCCccChhHHHHHHhcC-CCCCCCCCCCCCCCceeccCC
Q 018471 296 PGVSKCTLCLSNRQDPTA-TPCGHVFCWNCIMEWCNEK-PECPLCRAPITHSSLVCLYHS 353 (355)
Q Consensus 296 ~~~~~C~iC~~~~~~p~~-~~CgH~fC~~Ci~~~~~~~-~~CP~Cr~~~~~~~~~~l~~~ 353 (355)
.+...|+||++.+.+|+. ++|||.||+.||..|+... ..||.||.++...++++.+..
T Consensus 20 ~~~~~C~IC~~~~~~p~~~~~CgH~FC~~Ci~~~~~~~~~~CP~Cr~~~~~~~l~~~~~~ 79 (100)
T 3lrq_A 20 AEVFRCFICMEKLRDARLCPHCSKLCCFSCIRRWLTEQRAQCPHCRAPLQLRELVNCRWA 79 (100)
T ss_dssp HHHTBCTTTCSBCSSEEECTTTCCEEEHHHHHHHHHHTCSBCTTTCCBCCGGGCEECTTH
T ss_pred CCCCCCccCCccccCccccCCCCChhhHHHHHHHHHHCcCCCCCCCCcCCHHHhHhhHHH
Confidence 357899999999999999 9999999999999999877 799999999999888877643
No 12
>2csy_A Zinc finger protein 183-like 1; ring finger protein 161, ring domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.27 E-value=4.6e-12 Score=95.30 Aligned_cols=49 Identities=31% Similarity=0.736 Sum_probs=45.5
Q ss_pred CCCCccccccCCCCCCCeEcCCCCccChhHHHHHHhcCCCCCCCCCCCC
Q 018471 295 APGVSKCTLCLSNRQDPTATPCGHVFCWNCIMEWCNEKPECPLCRAPIT 343 (355)
Q Consensus 295 ~~~~~~C~iC~~~~~~p~~~~CgH~fC~~Ci~~~~~~~~~CP~Cr~~~~ 343 (355)
......|+||++.+.+|+.++|||+||..||..|+.....||.||.++.
T Consensus 12 ~~~~~~C~IC~~~~~~p~~~~CgH~fC~~Ci~~~~~~~~~CP~Cr~~~~ 60 (81)
T 2csy_A 12 EEIPFRCFICRQAFQNPVVTKCRHYFCESCALEHFRATPRCYICDQPTG 60 (81)
T ss_dssp CCCCSBCSSSCSBCCSEEECTTSCEEEHHHHHHHHHHCSBCSSSCCBCC
T ss_pred CCCCCCCcCCCchhcCeeEccCCCHhHHHHHHHHHHCCCcCCCcCcccc
Confidence 3457899999999999999999999999999999998899999999986
No 13
>2kre_A Ubiquitin conjugation factor E4 B; U-box domain, E3 ubiquitin ligase, E4 polyubiquitin chain EL factor, phosphoprotein, UBL conjugation pathway; NMR {Homo sapiens} PDB: 3l1x_A 3l1z_B
Probab=99.27 E-value=4.7e-12 Score=99.28 Aligned_cols=58 Identities=24% Similarity=0.280 Sum_probs=53.5
Q ss_pred CCCCCccccccCCCCCCCeEcCCCCccChhHHHHHHhcCCCCCCCCCCCCCCCceecc
Q 018471 294 AAPGVSKCTLCLSNRQDPTATPCGHVFCWNCIMEWCNEKPECPLCRAPITHSSLVCLY 351 (355)
Q Consensus 294 ~~~~~~~C~iC~~~~~~p~~~~CgH~fC~~Ci~~~~~~~~~CP~Cr~~~~~~~~~~l~ 351 (355)
...+.+.|+||++.+.+|+.++|||+||..||..|+.....||.|+.++...+++|..
T Consensus 25 ~~p~~~~CpI~~~~m~dPV~~~cGhtf~r~~I~~~l~~~~~cP~~~~~l~~~~L~pn~ 82 (100)
T 2kre_A 25 DAPDEFRDPLMDTLMTDPVRLPSGTIMDRSIILRHLLNSPTDPFNRQTLTESMLEPVP 82 (100)
T ss_dssp SCSTTTBCTTTCSBCSSEEEETTTEEEEHHHHHHHTTSCSBCSSSCCBCCTTSSEECH
T ss_pred cCcHhhCCcCccCcccCCeECCCCCEEchHHHHHHHHcCCCCCCCCCCCChhhceECH
Confidence 3457899999999999999999999999999999998889999999999999998864
No 14
>2kr4_A Ubiquitin conjugation factor E4 B; U-BOX, UFD2, ring, E3 ligase, UBL conjugation pathway; NMR {Mus musculus}
Probab=99.27 E-value=3.1e-12 Score=97.29 Aligned_cols=57 Identities=26% Similarity=0.274 Sum_probs=52.7
Q ss_pred CCCCccccccCCCCCCCeEcCCCCccChhHHHHHHhcCCCCCCCCCCCCCCCceecc
Q 018471 295 APGVSKCTLCLSNRQDPTATPCGHVFCWNCIMEWCNEKPECPLCRAPITHSSLVCLY 351 (355)
Q Consensus 295 ~~~~~~C~iC~~~~~~p~~~~CgH~fC~~Ci~~~~~~~~~CP~Cr~~~~~~~~~~l~ 351 (355)
..+.+.|+||++.+.+|+.++|||+||..||..|+.....||.|+.++...++++..
T Consensus 11 ~p~~~~CpI~~~~m~dPV~~~cGhtf~r~~I~~~l~~~~~cP~~~~~l~~~~l~pn~ 67 (85)
T 2kr4_A 11 APDEFRDPLMDTLMTDPVRLPSGTVMDRSIILRHLLNSPTDPFNRQMLTESMLEPVP 67 (85)
T ss_dssp CCTTTBCTTTCSBCSSEEECTTSCEEEHHHHHHHHHHCSBCTTTCCBCCGGGCEECH
T ss_pred CchheECcccCchhcCCeECCCCCEECHHHHHHHHhcCCCCCCCcCCCChHhcchHH
Confidence 356899999999999999999999999999999999889999999999988888764
No 15
>1wgm_A Ubiquitin conjugation factor E4A; ubiquitinating enzyme, KIAA0126, structural genomics, riken structural genomics/proteomics initiative, RSGI; NMR {Homo sapiens} SCOP: g.44.1.2
Probab=99.26 E-value=6e-12 Score=98.30 Aligned_cols=57 Identities=16% Similarity=0.066 Sum_probs=53.0
Q ss_pred CCCCccccccCCCCCCCeEcCCC-CccChhHHHHHHhcCCCCCCCCCCCCCCCceecc
Q 018471 295 APGVSKCTLCLSNRQDPTATPCG-HVFCWNCIMEWCNEKPECPLCRAPITHSSLVCLY 351 (355)
Q Consensus 295 ~~~~~~C~iC~~~~~~p~~~~Cg-H~fC~~Ci~~~~~~~~~CP~Cr~~~~~~~~~~l~ 351 (355)
..+++.|+||++.+.+|+.++|| |+||..||..|+.....||.|++++...+++|..
T Consensus 19 ~p~~~~CpI~~~~m~dPV~~~cG~htf~r~cI~~~l~~~~~cP~~~~~l~~~~L~pn~ 76 (98)
T 1wgm_A 19 ACDEFLDPIMSTLMCDPVVLPSSRVTVDRSTIARHLLSDQTDPFNRSPLTMDQIRPNT 76 (98)
T ss_dssp CCTTTBCTTTCSBCSSEEECTTTCCEEEHHHHHHHTTTSCBCTTTCSBCCTTTSEECH
T ss_pred CcHhcCCcCccccccCCeECCCCCeEECHHHHHHHHHhCCCCCCCCCCCChhhceEcH
Confidence 45689999999999999999999 9999999999998888999999999999998864
No 16
>2egp_A Tripartite motif-containing protein 34; ZF-C3HC4 domain, tripartite motif protein 34, interferon- responsive finger protein 1; NMR {Homo sapiens}
Probab=99.26 E-value=1.7e-12 Score=96.94 Aligned_cols=58 Identities=29% Similarity=0.667 Sum_probs=51.2
Q ss_pred CCCCccccccCCCCCCCeEcCCCCccChhHHHHHHhc-------CCCCCCCCCCCCCCCceeccC
Q 018471 295 APGVSKCTLCLSNRQDPTATPCGHVFCWNCIMEWCNE-------KPECPLCRAPITHSSLVCLYH 352 (355)
Q Consensus 295 ~~~~~~C~iC~~~~~~p~~~~CgH~fC~~Ci~~~~~~-------~~~CP~Cr~~~~~~~~~~l~~ 352 (355)
..+...|+||++.+.+|+.++|||.||..||..|+.. ...||.||.++...++.+.+.
T Consensus 9 ~~~~~~C~IC~~~~~~p~~l~CgH~fC~~Ci~~~~~~~~~~~~~~~~CP~Cr~~~~~~~l~~n~~ 73 (79)
T 2egp_A 9 VQEEVTCPICLELLTEPLSLDCGHSLCRACITVSNKEAVTSMGGKSSCPVCGISYSFEHLQANQH 73 (79)
T ss_dssp CCCCCEETTTTEECSSCCCCSSSCCCCHHHHSCCCCCCSSSCCCCCCCSSSCCCCCSSGGGTCSS
T ss_pred cccCCCCcCCCcccCCeeECCCCCHHHHHHHHHHHHhcccCCCCCCcCCCCCCcCCHhhCCcCHH
Confidence 3467899999999999999999999999999999875 579999999999888877654
No 17
>2ect_A Ring finger protein 126; metal binding protein, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Mus musculus}
Probab=99.25 E-value=6.6e-12 Score=93.65 Aligned_cols=55 Identities=25% Similarity=0.658 Sum_probs=47.8
Q ss_pred CCCccccccCCCCCCC---eEcCCCCccChhHHHHHHhcCCCCCCCCCCCCCCCceec
Q 018471 296 PGVSKCTLCLSNRQDP---TATPCGHVFCWNCIMEWCNEKPECPLCRAPITHSSLVCL 350 (355)
Q Consensus 296 ~~~~~C~iC~~~~~~p---~~~~CgH~fC~~Ci~~~~~~~~~CP~Cr~~~~~~~~~~l 350 (355)
.....|+||++.+.++ ..++|||+||..||..|+..+..||+||+.+...++.+.
T Consensus 13 ~~~~~C~IC~~~~~~~~~~~~~~C~H~fc~~Ci~~~~~~~~~CP~Cr~~~~~~~~~~~ 70 (78)
T 2ect_A 13 GSGLECPVCKEDYALGESVRQLPCNHLFHDSCIVPWLEQHDSCPVCRKSLTGQNTATN 70 (78)
T ss_dssp SSSCCCTTTTSCCCTTSCEEECTTSCEEETTTTHHHHTTTCSCTTTCCCCCCSCSCCC
T ss_pred CCCCCCeeCCccccCCCCEEEeCCCCeecHHHHHHHHHcCCcCcCcCCccCCcccCCC
Confidence 4578999999988765 456999999999999999988999999999998877654
No 18
>3ztg_A E3 ubiquitin-protein ligase RBBP6; PACT, U-BOX, mRNA processing, mRNA splicing; NMR {Homo sapiens}
Probab=99.23 E-value=8.4e-12 Score=96.14 Aligned_cols=57 Identities=26% Similarity=0.603 Sum_probs=48.1
Q ss_pred CCCCCccccccCCCCCCCeEcC-CCCccChhHHHHHHhc--CCCCCCCCCCC-CCCCceec
Q 018471 294 AAPGVSKCTLCLSNRQDPTATP-CGHVFCWNCIMEWCNE--KPECPLCRAPI-THSSLVCL 350 (355)
Q Consensus 294 ~~~~~~~C~iC~~~~~~p~~~~-CgH~fC~~Ci~~~~~~--~~~CP~Cr~~~-~~~~~~~l 350 (355)
...+...|+||++.+.+|+.++ |||.||..||..|+.. ...||.||.++ ...++.+.
T Consensus 9 ~~~~~~~C~IC~~~~~~p~~~~~CgH~fC~~Ci~~~~~~~~~~~CP~Cr~~~~~~~~~~~n 69 (92)
T 3ztg_A 9 PIPDELLCLICKDIMTDAVVIPCCGNSYCDECIRTALLESDEHTCPTCHQNDVSPDALIAN 69 (92)
T ss_dssp CCCTTTEETTTTEECSSCEECTTTCCEECHHHHHHHHHHCTTCCCTTTCCSSCCTTSCEEC
T ss_pred cCCcCCCCCCCChhhcCceECCCCCCHHHHHHHHHHHHhcCCCcCcCCCCcCCCccccCcC
Confidence 3456799999999999999999 9999999999999864 36999999997 45566554
No 19
>1g25_A CDK-activating kinase assembly factor MAT1; ring finger (C3HC4), metal binding protein; NMR {Homo sapiens} SCOP: g.44.1.1
Probab=99.22 E-value=5.7e-12 Score=90.65 Aligned_cols=57 Identities=25% Similarity=0.626 Sum_probs=48.7
Q ss_pred CccccccCC-CCCCC----eEcCCCCccChhHHHHHHh-cCCCCCCCCCCCCCCCceeccCCC
Q 018471 298 VSKCTLCLS-NRQDP----TATPCGHVFCWNCIMEWCN-EKPECPLCRAPITHSSLVCLYHSD 354 (355)
Q Consensus 298 ~~~C~iC~~-~~~~p----~~~~CgH~fC~~Ci~~~~~-~~~~CP~Cr~~~~~~~~~~l~~~~ 354 (355)
+..|+||++ .+.+| +.++|||+||..||..|.. ....||.||+++..+++.+.+.-|
T Consensus 3 ~~~C~IC~~~~~~~~~~~~~~~~CgH~fC~~Ci~~~~~~~~~~CP~Cr~~~~~~~~~~~~~~d 65 (65)
T 1g25_A 3 DQGCPRCKTTKYRNPSLKLMVNVCGHTLCESCVDLLFVRGAGNCPECGTPLRKSNFRVQLFED 65 (65)
T ss_dssp TTCCSTTTTHHHHCSSCCEEECTTCCCEEHHHHHHHHHTTSSSCTTTCCCCSSCCCEEECCCC
T ss_pred CCcCCcCCCCccCCCccCeecCCCCCHhHHHHHHHHHHcCCCcCCCCCCccccccceeecccC
Confidence 578999999 77777 4689999999999999965 446899999999999999887554
No 20
>2ea6_A Ring finger protein 4; RNF4, RES4-26, ring domain, zinc- binding domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.22 E-value=4.7e-12 Score=91.92 Aligned_cols=50 Identities=34% Similarity=0.901 Sum_probs=44.5
Q ss_pred CCCCccccccCCCCCCC-------eEcCCCCccChhHHHHHHhcCCCCCCCCCCCCC
Q 018471 295 APGVSKCTLCLSNRQDP-------TATPCGHVFCWNCIMEWCNEKPECPLCRAPITH 344 (355)
Q Consensus 295 ~~~~~~C~iC~~~~~~p-------~~~~CgH~fC~~Ci~~~~~~~~~CP~Cr~~~~~ 344 (355)
..+...|+||++.+.++ +.++|||+||..||..|+..+..||+||.++..
T Consensus 12 ~~~~~~C~IC~~~~~~~~~~~~~~~~~~CgH~fc~~Ci~~~~~~~~~CP~Cr~~~~~ 68 (69)
T 2ea6_A 12 PSGTVSCPICMDGYSEIVQNGRLIVSTECGHVFCSQCLRDSLKNANTCPTCRKKINH 68 (69)
T ss_dssp TTCCCCCTTTCCCHHHHTTTTCCEEECSSSCEEEHHHHHHHHHHCSSCTTTCCCCCC
T ss_pred CCCCCCCcccCccccccccccCCeEeCCCCChhcHHHHHHHHHcCCCCCCCCCccCc
Confidence 34678999999988776 889999999999999999989999999998864
No 21
>2ct2_A Tripartite motif protein 32; zinc-finger protein HT2A, TAT- interacting protein, ring domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.22 E-value=9.7e-12 Score=94.75 Aligned_cols=57 Identities=26% Similarity=0.658 Sum_probs=48.8
Q ss_pred CCCCccccccCCCCCC----CeEcCCCCccChhHHHHHHhcC---CCCCCCCCCCCCCCceecc
Q 018471 295 APGVSKCTLCLSNRQD----PTATPCGHVFCWNCIMEWCNEK---PECPLCRAPITHSSLVCLY 351 (355)
Q Consensus 295 ~~~~~~C~iC~~~~~~----p~~~~CgH~fC~~Ci~~~~~~~---~~CP~Cr~~~~~~~~~~l~ 351 (355)
..+...|+||++.+.+ |+.++|||.||..|+..|+... ..||.||..+...++..+.
T Consensus 12 ~~~~~~C~IC~~~~~~~~~~~~~~~CgH~fC~~Ci~~~~~~~~~~~~CP~Cr~~~~~~~i~~l~ 75 (88)
T 2ct2_A 12 LREVLECPICMESFTEEQLRPKLLHCGHTICRQCLEKLLASSINGVRCPFCSKITRITSLTQLT 75 (88)
T ss_dssp CCSCCBCTTTCCBCCTTSSCEEECSSSCEEEHHHHHHHHHHCSSCBCCTTTCCCBCCSSTTTSE
T ss_pred ccCCCCCccCCccccccCCCeEECCCCChhhHHHHHHHHHcCCCCcCCCCCCCcccchhHHHHH
Confidence 3457899999999988 9999999999999999999865 7999999998876655443
No 22
>1chc_A Equine herpes virus-1 ring domain; viral protein; NMR {Equid herpesvirus 1} SCOP: g.44.1.1
Probab=99.18 E-value=2e-11 Score=88.48 Aligned_cols=47 Identities=38% Similarity=1.125 Sum_probs=43.1
Q ss_pred CCccccccCCCCCCC-eEcCCCCccChhHHHHHHhcCCCCCCCCCCCC
Q 018471 297 GVSKCTLCLSNRQDP-TATPCGHVFCWNCIMEWCNEKPECPLCRAPIT 343 (355)
Q Consensus 297 ~~~~C~iC~~~~~~p-~~~~CgH~fC~~Ci~~~~~~~~~CP~Cr~~~~ 343 (355)
....|+||++.+.++ +.++|||.||..|+..|+..+..||.||.++.
T Consensus 4 ~~~~C~IC~~~~~~~~~~~~C~H~fc~~Ci~~~~~~~~~CP~Cr~~~~ 51 (68)
T 1chc_A 4 VAERCPICLEDPSNYSMALPCLHAFCYVCITRWIRQNPTCPLCKVPVE 51 (68)
T ss_dssp CCCCCSSCCSCCCSCEEETTTTEEESTTHHHHHHHHSCSTTTTCCCCC
T ss_pred CCCCCeeCCccccCCcEecCCCCeeHHHHHHHHHhCcCcCcCCChhhH
Confidence 456899999999986 78899999999999999998899999999887
No 23
>2kiz_A E3 ubiquitin-protein ligase arkadia; ring-H2 finger, E3 ligase, Zn binding domain, metal zinc, zinc-finger, metal binding protein; NMR {Homo sapiens}
Probab=99.18 E-value=2.3e-11 Score=88.43 Aligned_cols=50 Identities=36% Similarity=0.806 Sum_probs=43.2
Q ss_pred CCCCccccccCCCCC---CCeEcCCCCccChhHHHHHHhcCCCCCCCCCCCCC
Q 018471 295 APGVSKCTLCLSNRQ---DPTATPCGHVFCWNCIMEWCNEKPECPLCRAPITH 344 (355)
Q Consensus 295 ~~~~~~C~iC~~~~~---~p~~~~CgH~fC~~Ci~~~~~~~~~CP~Cr~~~~~ 344 (355)
......|+||++.+. .++.++|||+||..||..|+..+..||+||..+..
T Consensus 11 ~~~~~~C~IC~~~~~~~~~~~~~~C~H~fc~~Ci~~~~~~~~~CP~Cr~~~~~ 63 (69)
T 2kiz_A 11 EDTEEKCTICLSILEEGEDVRRLPCMHLFHQVCVDQWLITNKKCPICRVDIEA 63 (69)
T ss_dssp TTCCCSBTTTTBCCCSSSCEEECTTSCEEEHHHHHHHHHHCSBCTTTCSBSCS
T ss_pred CCCCCCCeeCCccccCCCcEEEeCCCCHHHHHHHHHHHHcCCCCcCcCccccC
Confidence 345789999998875 35778999999999999999988899999998875
No 24
>4ayc_A E3 ubiquitin-protein ligase RNF8; DNA damage, K63 chains; HET: CPQ; 1.90A {Homo sapiens} PDB: 4epo_C
Probab=99.17 E-value=8.7e-12 Score=103.60 Aligned_cols=48 Identities=35% Similarity=0.854 Sum_probs=44.6
Q ss_pred CccccccCCCCCCCeEcCCCCccChhHHHHHHhcCCCCCCCCCCCCCC
Q 018471 298 VSKCTLCLSNRQDPTATPCGHVFCWNCIMEWCNEKPECPLCRAPITHS 345 (355)
Q Consensus 298 ~~~C~iC~~~~~~p~~~~CgH~fC~~Ci~~~~~~~~~CP~Cr~~~~~~ 345 (355)
+..|+||++.+.+|+.++|||.||..||..|+..+..||.||+++...
T Consensus 53 ~~~C~iC~~~~~~~~~~~CgH~fc~~Ci~~~~~~~~~CP~Cr~~~~~~ 100 (138)
T 4ayc_A 53 ELQCIICSEYFIEAVTLNCAHSFCSYCINEWMKRKIECPICRKDIKSK 100 (138)
T ss_dssp HSBCTTTCSBCSSEEEETTSCEEEHHHHHHHTTTCSBCTTTCCBCCCE
T ss_pred cCCCcccCcccCCceECCCCCCccHHHHHHHHHcCCcCCCCCCcCCCC
Confidence 568999999999999999999999999999999999999999998643
No 25
>2ysj_A Tripartite motif-containing protein 31; ring-type zinc finger domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.16 E-value=4.2e-11 Score=85.45 Aligned_cols=44 Identities=36% Similarity=0.836 Sum_probs=39.7
Q ss_pred CCCCccccccCCCCCCCeEcCCCCccChhHHHHHHh---cCCCCCCC
Q 018471 295 APGVSKCTLCLSNRQDPTATPCGHVFCWNCIMEWCN---EKPECPLC 338 (355)
Q Consensus 295 ~~~~~~C~iC~~~~~~p~~~~CgH~fC~~Ci~~~~~---~~~~CP~C 338 (355)
..+...|+||++.+.+|+.++|||+||..||..|+. ....||.|
T Consensus 17 ~~~~~~C~IC~~~~~~p~~~~CgH~fC~~Ci~~~~~~~~~~~~CP~C 63 (63)
T 2ysj_A 17 LQEEVICPICLDILQKPVTIDCGHNFCLKCITQIGETSCGFFKCPLC 63 (63)
T ss_dssp CCCCCBCTTTCSBCSSCEECTTSSEECHHHHHHHHHHCSSCCCCSCC
T ss_pred CccCCCCCcCCchhCCeEEeCCCCcchHHHHHHHHHcCCCCCcCcCC
Confidence 356789999999999999999999999999999997 45689998
No 26
>2y43_A E3 ubiquitin-protein ligase RAD18; DNA repair, metal-binding, translesion synthesis, UB conjugation pathway; 1.80A {Homo sapiens}
Probab=99.16 E-value=1.3e-11 Score=96.38 Aligned_cols=56 Identities=23% Similarity=0.568 Sum_probs=49.9
Q ss_pred CCCccccccCCCCCCCeEc-CCCCccChhHHHHHHhcCCCCCCCCCCCCCCCceecc
Q 018471 296 PGVSKCTLCLSNRQDPTAT-PCGHVFCWNCIMEWCNEKPECPLCRAPITHSSLVCLY 351 (355)
Q Consensus 296 ~~~~~C~iC~~~~~~p~~~-~CgH~fC~~Ci~~~~~~~~~CP~Cr~~~~~~~~~~l~ 351 (355)
.+...|+||++.+.+|+.+ +|||.||..||..|+..+..||.||..+...++.+.+
T Consensus 20 ~~~~~C~IC~~~~~~p~~~~~CgH~fC~~Ci~~~~~~~~~CP~Cr~~~~~~~l~~n~ 76 (99)
T 2y43_A 20 DDLLRCGICFEYFNIAMIIPQCSHNYCSLCIRKFLSYKTQCPTCCVTVTEPDLKNNR 76 (99)
T ss_dssp HHHTBCTTTCSBCSSEEECTTTCCEEEHHHHHHHHTTCCBCTTTCCBCCGGGCEECH
T ss_pred CCCCCcccCChhhCCcCEECCCCCHhhHHHHHHHHHCCCCCCCCCCcCChhhCCcCH
Confidence 3568999999999999888 8999999999999999889999999999887776643
No 27
>2ecn_A Ring finger protein 141; RNF141, ring domain, zinc-binding domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.15 E-value=9.6e-12 Score=90.77 Aligned_cols=54 Identities=31% Similarity=0.871 Sum_probs=47.6
Q ss_pred CCCccccccCCCCCCCeEcCCCCccChhHHHHHHhcCCCCCCCCCCCCCCCceec
Q 018471 296 PGVSKCTLCLSNRQDPTATPCGHVFCWNCIMEWCNEKPECPLCRAPITHSSLVCL 350 (355)
Q Consensus 296 ~~~~~C~iC~~~~~~p~~~~CgH~fC~~Ci~~~~~~~~~CP~Cr~~~~~~~~~~l 350 (355)
.+...|+||++.+.+ +.++|||.||..|+..|+.....||.||.++...+...+
T Consensus 13 ~~~~~C~IC~~~~~~-~~~~CgH~fc~~Ci~~~~~~~~~CP~Cr~~~~~~~~~~~ 66 (70)
T 2ecn_A 13 TDEEECCICMDGRAD-LILPCAHSFCQKCIDKWSDRHRNCPICRLQMTGANESSG 66 (70)
T ss_dssp CCCCCCSSSCCSCCS-EEETTTEEECHHHHHHSSCCCSSCHHHHHCTTCCCCCCC
T ss_pred CCCCCCeeCCcCccC-cccCCCCcccHHHHHHHHHCcCcCCCcCCcccCCCcccc
Confidence 457899999999988 899999999999999999988999999999987655443
No 28
>1x4j_A Ring finger protein 38; structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.15 E-value=1.6e-11 Score=90.85 Aligned_cols=50 Identities=28% Similarity=0.765 Sum_probs=44.3
Q ss_pred CCCccccccCCCCCCC---eEcCCCCccChhHHHHHHhcCCCCCCCCCCCCCC
Q 018471 296 PGVSKCTLCLSNRQDP---TATPCGHVFCWNCIMEWCNEKPECPLCRAPITHS 345 (355)
Q Consensus 296 ~~~~~C~iC~~~~~~p---~~~~CgH~fC~~Ci~~~~~~~~~CP~Cr~~~~~~ 345 (355)
.+...|+||++.+.++ ..++|||+||..||..|++.+..||+||+++...
T Consensus 21 ~~~~~C~IC~~~~~~~~~~~~l~C~H~fh~~Ci~~w~~~~~~CP~Cr~~~~~~ 73 (75)
T 1x4j_A 21 SEQTLCVVCMCDFESRQLLRVLPCNHEFHAKCVDKWLKANRTCPICRADSGPS 73 (75)
T ss_dssp SSCCEETTTTEECCBTCEEEEETTTEEEETTHHHHHHHHCSSCTTTCCCCCCC
T ss_pred CCCCCCeECCcccCCCCeEEEECCCCHhHHHHHHHHHHcCCcCcCcCCcCCCC
Confidence 3567999999988876 6789999999999999999899999999988754
No 29
>1iym_A EL5; ring-H2 finger, ubiquitin ligase, DNA binding protein; NMR {Oryza sativa} SCOP: g.44.1.1
Probab=99.15 E-value=3.1e-11 Score=83.61 Aligned_cols=47 Identities=34% Similarity=0.890 Sum_probs=41.8
Q ss_pred CCccccccCCCCCC---CeEcC-CCCccChhHHHHHHhcCCCCCCCCCCCC
Q 018471 297 GVSKCTLCLSNRQD---PTATP-CGHVFCWNCIMEWCNEKPECPLCRAPIT 343 (355)
Q Consensus 297 ~~~~C~iC~~~~~~---p~~~~-CgH~fC~~Ci~~~~~~~~~CP~Cr~~~~ 343 (355)
++..|+||++.+.+ +..++ |||.||..|+..|++.+..||.||+++.
T Consensus 4 ~~~~C~IC~~~~~~~~~~~~~~~C~H~f~~~Ci~~w~~~~~~CP~Cr~~~~ 54 (55)
T 1iym_A 4 DGVECAVCLAELEDGEEARFLPRCGHGFHAECVDMWLGSHSTCPLCRLTVV 54 (55)
T ss_dssp CSCCCTTTCCCCCTTSCCEECSSSCCEECTTHHHHTTTTCCSCSSSCCCSC
T ss_pred CCCcCccCCccccCCCceEECCCCCCcccHHHHHHHHHcCCcCcCCCCEeE
Confidence 46789999999876 67776 9999999999999999999999998764
No 30
>2ecm_A Ring finger and CHY zinc finger domain- containing protein 1; RCHY1, ring domain, zinc-binding domain, structural genomics, NPPSFA; NMR {Mus musculus} PDB: 2jrj_A
Probab=99.14 E-value=2.9e-11 Score=83.74 Aligned_cols=47 Identities=36% Similarity=0.868 Sum_probs=41.9
Q ss_pred CCccccccCCCCCC----CeEcCCCCccChhHHHHHHhcCCCCCCCCCCCC
Q 018471 297 GVSKCTLCLSNRQD----PTATPCGHVFCWNCIMEWCNEKPECPLCRAPIT 343 (355)
Q Consensus 297 ~~~~C~iC~~~~~~----p~~~~CgH~fC~~Ci~~~~~~~~~CP~Cr~~~~ 343 (355)
.+..|+||++.+.+ ++.++|||+||..|+..|+.....||+||+++.
T Consensus 4 ~~~~C~IC~~~~~~~~~~~~~~~CgH~fc~~Ci~~~~~~~~~CP~Cr~~~~ 54 (55)
T 2ecm_A 4 GSSGCPICLEDIHTSRVVAHVLPCGHLLHRTCYEEMLKEGYRCPLCSGPSS 54 (55)
T ss_dssp CCCSCTTTCCCCCTTTSCEEECTTSCEEETTHHHHHHHHTCCCTTSCCSSC
T ss_pred CCCcCcccChhhcCCCcCeEecCCCCcccHHHHHHHHHcCCcCCCCCCcCC
Confidence 45789999998865 678899999999999999998899999999875
No 31
>1jm7_A BRCA1, breast cancer type 1 susceptibility protein; ring finger, zinc-binding protein, heterodimer, ubiquitin ligase, antitumor; NMR {Homo sapiens} SCOP: g.44.1.1
Probab=99.13 E-value=4.1e-11 Score=95.54 Aligned_cols=56 Identities=36% Similarity=0.841 Sum_probs=49.5
Q ss_pred CCccccccCCCCCCCeEcCCCCccChhHHHHHHhcC---CCCCCCCCCCCCCCceeccC
Q 018471 297 GVSKCTLCLSNRQDPTATPCGHVFCWNCIMEWCNEK---PECPLCRAPITHSSLVCLYH 352 (355)
Q Consensus 297 ~~~~C~iC~~~~~~p~~~~CgH~fC~~Ci~~~~~~~---~~CP~Cr~~~~~~~~~~l~~ 352 (355)
+...|+||++.+.+|+.++|||.||..||..|+... ..||.||.++...++.+...
T Consensus 20 ~~~~C~IC~~~~~~p~~~~CgH~fC~~Ci~~~~~~~~~~~~CP~Cr~~~~~~~~~~~~~ 78 (112)
T 1jm7_A 20 KILECPICLELIKEPVSTKCDHIFCKFCMLKLLNQKKGPSQCPLCKNDITKRSLQESTR 78 (112)
T ss_dssp HHTSCSSSCCCCSSCCBCTTSCCCCSHHHHHHHHSSSSSCCCTTTSCCCCTTTCBCCCS
T ss_pred CCCCCcccChhhcCeEECCCCCHHHHHHHHHHHHhCCCCCCCcCCCCcCCHhhcCccHH
Confidence 457899999999999999999999999999999754 48999999999888877653
No 32
>2ep4_A Ring finger protein 24; zinc binding, ubiquitin, E3 enzyme, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.12 E-value=4.2e-11 Score=88.31 Aligned_cols=49 Identities=29% Similarity=0.828 Sum_probs=42.7
Q ss_pred CCCccccccCCCCCCCeEc---CCCCccChhHHHHHHhcCCCCCCCCCCCCC
Q 018471 296 PGVSKCTLCLSNRQDPTAT---PCGHVFCWNCIMEWCNEKPECPLCRAPITH 344 (355)
Q Consensus 296 ~~~~~C~iC~~~~~~p~~~---~CgH~fC~~Ci~~~~~~~~~CP~Cr~~~~~ 344 (355)
.....|+||++.+.++..+ +|||+||..||..|++.+..||+||.++..
T Consensus 13 ~~~~~C~IC~~~~~~~~~~~~~~C~H~f~~~Ci~~~~~~~~~CP~Cr~~~~~ 64 (74)
T 2ep4_A 13 NLHELCAVCLEDFKPRDELGICPCKHAFHRKCLIKWLEVRKVCPLCNMPVLQ 64 (74)
T ss_dssp CCSCBCSSSCCBCCSSSCEEEETTTEEEEHHHHHHHHHHCSBCTTTCCBCSS
T ss_pred CCCCCCcCCCcccCCCCcEEEcCCCCEecHHHHHHHHHcCCcCCCcCccccc
Confidence 4567999999998766444 999999999999999988899999998864
No 33
>3fl2_A E3 ubiquitin-protein ligase UHRF1; cell cycle, DNA damage, DNA repair, ring finger domain, metal binding, DNA replication; 1.75A {Homo sapiens}
Probab=99.12 E-value=2.4e-11 Score=98.92 Aligned_cols=53 Identities=23% Similarity=0.518 Sum_probs=46.2
Q ss_pred CCccccccCCCCCCCeEcCCCCccChhHHHHHHhcC-CCCCCCCCCCCC-CCcee
Q 018471 297 GVSKCTLCLSNRQDPTATPCGHVFCWNCIMEWCNEK-PECPLCRAPITH-SSLVC 349 (355)
Q Consensus 297 ~~~~C~iC~~~~~~p~~~~CgH~fC~~Ci~~~~~~~-~~CP~Cr~~~~~-~~~~~ 349 (355)
+...|+||++.+.+|+.++|||.||..||..|+... ..||.||.++.. ..+.+
T Consensus 51 ~~~~C~IC~~~~~~p~~~~CgH~fC~~Ci~~~~~~~~~~CP~Cr~~~~~~~~~~~ 105 (124)
T 3fl2_A 51 ETFQCICCQELVFRPITTVCQHNVCKDCLDRSFRAQVFSCPACRYDLGRSYAMQV 105 (124)
T ss_dssp HHTBCTTTSSBCSSEEECTTSCEEEHHHHHHHHHTTCCBCTTTCCBCCTTCCCCC
T ss_pred cCCCCCcCChHHcCcEEeeCCCcccHHHHHHHHhHCcCCCCCCCccCCCCCCCCC
Confidence 467999999999999999999999999999999744 599999999986 44443
No 34
>2l0b_A E3 ubiquitin-protein ligase praja-1; zinc finger, NESG, structural genomics, PSI-2, protein struc initiative; NMR {Homo sapiens}
Probab=99.11 E-value=3.2e-11 Score=92.81 Aligned_cols=49 Identities=29% Similarity=0.681 Sum_probs=43.7
Q ss_pred CCCccccccCCCCCC---CeEcCCCCccChhHHHHHHhcCCCCCCCCCCCCC
Q 018471 296 PGVSKCTLCLSNRQD---PTATPCGHVFCWNCIMEWCNEKPECPLCRAPITH 344 (355)
Q Consensus 296 ~~~~~C~iC~~~~~~---p~~~~CgH~fC~~Ci~~~~~~~~~CP~Cr~~~~~ 344 (355)
..+..|+||++.+.. +..++|||.||..||..|+..+..||+||.++..
T Consensus 38 ~~~~~C~IC~~~~~~~~~~~~l~C~H~Fh~~Ci~~wl~~~~~CP~Cr~~~~~ 89 (91)
T 2l0b_A 38 GQEMCCPICCSEYVKGDVATELPCHHYFHKPCVSIWLQKSGTCPVCRCMFPP 89 (91)
T ss_dssp SSCSEETTTTEECCTTCEEEEETTTEEEEHHHHHHHHTTTCBCTTTCCBSSC
T ss_pred CCCCCCcccChhhcCCCcEEecCCCChHHHHHHHHHHHcCCcCcCcCccCCC
Confidence 457899999998876 6778999999999999999988999999998864
No 35
>2ckl_A Polycomb group ring finger protein 4; BMI1, RING1B, polycomb, E3-ligase, nuclear protein, chromosomal protein, transcription regulation; 2.0A {Mus musculus} PDB: 3rpg_B 2h0d_A
Probab=99.11 E-value=3.8e-11 Score=95.36 Aligned_cols=50 Identities=28% Similarity=0.658 Sum_probs=46.1
Q ss_pred CCCccccccCCCCCCCeEc-CCCCccChhHHHHHHhcCCCCCCCCCCCCCC
Q 018471 296 PGVSKCTLCLSNRQDPTAT-PCGHVFCWNCIMEWCNEKPECPLCRAPITHS 345 (355)
Q Consensus 296 ~~~~~C~iC~~~~~~p~~~-~CgH~fC~~Ci~~~~~~~~~CP~Cr~~~~~~ 345 (355)
.+...|+||++.+.+|+.+ +|||.||..||..|+.....||.||..+...
T Consensus 13 ~~~~~C~IC~~~~~~p~~~~~CgH~fC~~Ci~~~~~~~~~CP~Cr~~~~~~ 63 (108)
T 2ckl_A 13 NPHLMCVLCGGYFIDATTIIECLHSFCKTCIVRYLETSKYCPICDVQVHKT 63 (108)
T ss_dssp GGGTBCTTTSSBCSSEEEETTTCCEEEHHHHHHHHTSCSBCTTTCCBSCSS
T ss_pred CCcCCCccCChHHhCcCEeCCCCChhhHHHHHHHHHhCCcCcCCCcccccc
Confidence 3578999999999999997 9999999999999999889999999998865
No 36
>2ecj_A Tripartite motif-containing protein 39; TRIM39, ring domain, zinc-binding domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.10 E-value=8.5e-11 Score=82.20 Aligned_cols=43 Identities=35% Similarity=0.988 Sum_probs=38.6
Q ss_pred CCCccccccCCCCCCCeEcCCCCccChhHHHHHHh---cCCCCCCC
Q 018471 296 PGVSKCTLCLSNRQDPTATPCGHVFCWNCIMEWCN---EKPECPLC 338 (355)
Q Consensus 296 ~~~~~C~iC~~~~~~p~~~~CgH~fC~~Ci~~~~~---~~~~CP~C 338 (355)
.+...|+||++.+.+|+.++|||+||..||..|+. ....||.|
T Consensus 13 ~~~~~C~IC~~~~~~p~~~~CgH~fC~~Ci~~~~~~~~~~~~CP~C 58 (58)
T 2ecj_A 13 QVEASCSVCLEYLKEPVIIECGHNFCKACITRWWEDLERDFPCPVC 58 (58)
T ss_dssp CCCCBCSSSCCBCSSCCCCSSCCCCCHHHHHHHTTSSCCSCCCSCC
T ss_pred ccCCCCccCCcccCccEeCCCCCccCHHHHHHHHHhcCCCCCCCCC
Confidence 45789999999999999999999999999999954 55789998
No 37
>4ap4_A E3 ubiquitin ligase RNF4; ligase-signalling protein complex, chimera; 2.21A {Rattus norvegicus}
Probab=99.09 E-value=3.2e-11 Score=98.82 Aligned_cols=57 Identities=32% Similarity=0.808 Sum_probs=52.5
Q ss_pred CCCccccccCCCCCCC-------eEcCCCCccChhHHHHHHhcCCCCCCCCCCCCCCCceeccC
Q 018471 296 PGVSKCTLCLSNRQDP-------TATPCGHVFCWNCIMEWCNEKPECPLCRAPITHSSLVCLYH 352 (355)
Q Consensus 296 ~~~~~C~iC~~~~~~p-------~~~~CgH~fC~~Ci~~~~~~~~~CP~Cr~~~~~~~~~~l~~ 352 (355)
.+...|+||++.+.+| +.++|||+||+.||..|++.+..||.||+.+...++.++|-
T Consensus 5 ~~~~~C~IC~~~~~~~~~~~~~~~~~~CgH~fc~~Ci~~~~~~~~~CP~Cr~~~~~~~l~~l~i 68 (133)
T 4ap4_A 5 SGTVSCPICMDGYSEIVQNGRLIVSTECGHVFCSQCLRDSLKNANTCPTCRKKINHKRYHPIYI 68 (133)
T ss_dssp CCSCBCTTTCCBHHHHHHTTCCEEEETTCCEEEHHHHHHHHTTCSBCTTTCCBCTTTCEEECBC
T ss_pred CCCCCCcccChhhhCccccccCeEecCCCChhhHHHHHHHHHhCCCCCCCCCcCcccccccccc
Confidence 3568999999999887 89999999999999999999999999999999999998874
No 38
>3hct_A TNF receptor-associated factor 6; cross-brace, beta-BETA-alpha, coiled coil, cytoplasm, metal- binding, UBL conjugation, UBL conjugation pathway; 2.10A {Homo sapiens} PDB: 3hcu_A 2eci_A 2jmd_A
Probab=99.08 E-value=4.3e-11 Score=96.62 Aligned_cols=55 Identities=27% Similarity=0.666 Sum_probs=48.8
Q ss_pred CCCCccccccCCCCCCCeEcCCCCccChhHHHHHHhcCC-CCCCCCCCCCCCCcee
Q 018471 295 APGVSKCTLCLSNRQDPTATPCGHVFCWNCIMEWCNEKP-ECPLCRAPITHSSLVC 349 (355)
Q Consensus 295 ~~~~~~C~iC~~~~~~p~~~~CgH~fC~~Ci~~~~~~~~-~CP~Cr~~~~~~~~~~ 349 (355)
..+...|+||++.+.+|+.++|||+||..||..|+.... .||.||.++...++.+
T Consensus 15 ~~~~~~C~IC~~~~~~p~~~~CgH~fC~~Ci~~~~~~~~~~CP~Cr~~~~~~~~~~ 70 (118)
T 3hct_A 15 LESKYECPICLMALREAVQTPCGHRFCKACIIKSIRDAGHKCPVDNEILLENQLFP 70 (118)
T ss_dssp CCGGGBCTTTCSBCSSEEECTTSCEEEHHHHHHHHHHHCSBCTTTCCBCCGGGCEE
T ss_pred CCCCCCCCcCChhhcCeEECCcCChhhHHHHHHHHhhCCCCCCCCCCCcCHHhccc
Confidence 346789999999999999999999999999999997654 9999999998877665
No 39
>2vje_A E3 ubiquitin-protein ligase MDM2; proto-oncogene, phosphorylation, alternative splicing, HOST-virus interaction, UBL conjugation pathway, zinc-finger, polymorphism; HET: FLC; 2.20A {Homo sapiens} PDB: 2vjf_A* 2hdp_A
Probab=99.06 E-value=6.5e-11 Score=84.97 Aligned_cols=54 Identities=26% Similarity=0.745 Sum_probs=48.2
Q ss_pred CCccccccCCCCCCCeEc--CCCCc-cChhHHHHHHhcCCCCCCCCCCCCCCCceeccC
Q 018471 297 GVSKCTLCLSNRQDPTAT--PCGHV-FCWNCIMEWCNEKPECPLCRAPITHSSLVCLYH 352 (355)
Q Consensus 297 ~~~~C~iC~~~~~~p~~~--~CgH~-fC~~Ci~~~~~~~~~CP~Cr~~~~~~~~~~l~~ 352 (355)
++..|+||++...+++.+ ||||. ||+.|+..|...+..||+||+++. +++++|.
T Consensus 7 ~~~~C~IC~~~~~~~~~~~~pCgH~~~C~~C~~~~~~~~~~CPiCR~~i~--~~i~i~~ 63 (64)
T 2vje_A 7 AIEPCVICQGRPKNGCIVHGKTGHLMACFTCAKKLKKRNKPCPVCRQPIQ--MIVLTYF 63 (64)
T ss_dssp GGSCCTTTSSSCSCEEEEETTEEEEEECHHHHHHHHHTTCCCTTTCCCCC--EEEEEEC
T ss_pred CcCCCCcCCCCCCCEEEECCCCCChhhHHHHHHHHHHcCCcCCCcCcchh--ceEeeec
Confidence 467899999999999877 99999 899999999988889999999886 7888774
No 40
>2c2l_A CHIP, carboxy terminus of HSP70-interacting protein; chaperone, E3 ligase, ubiquitinylation, TPR, heat-shock protein complex; 3.3A {Mus musculus} SCOP: a.118.8.1 g.44.1.2
Probab=99.05 E-value=9.9e-11 Score=107.99 Aligned_cols=57 Identities=21% Similarity=0.285 Sum_probs=50.7
Q ss_pred CCCCccccccCCCCCCCeEcCCCCccChhHHHHHHhcC-CCCCCCCCCCCCCCceecc
Q 018471 295 APGVSKCTLCLSNRQDPTATPCGHVFCWNCIMEWCNEK-PECPLCRAPITHSSLVCLY 351 (355)
Q Consensus 295 ~~~~~~C~iC~~~~~~p~~~~CgH~fC~~Ci~~~~~~~-~~CP~Cr~~~~~~~~~~l~ 351 (355)
.+..+.|+||++.+.+|+.++|||+||..||..|+... ..||.|+.++...+++|..
T Consensus 205 ~~~~~~c~i~~~~~~dPv~~~~gh~f~~~~i~~~~~~~~~~cP~~~~~~~~~~l~~n~ 262 (281)
T 2c2l_A 205 IPDYLCGKISFELMREPCITPSGITYDRKDIEEHLQRVGHFNPVTRSPLTQEQLIPNL 262 (281)
T ss_dssp CCSTTBCTTTCSBCSSEEECSSCCEEETTHHHHHHHHTCSSCTTTCCCCCGGGCEECH
T ss_pred CCcccCCcCcCCHhcCCeECCCCCEECHHHHHHHHHHCCCCCcCCCCCCchhcCcccH
Confidence 35688999999999999999999999999999999754 4599999999988888753
No 41
>1z6u_A NP95-like ring finger protein isoform B; structural genomics consortium, ligase, ubiquitin-protein ligase, cell cycle regulation, SGC; 2.10A {Homo sapiens}
Probab=99.05 E-value=9.2e-11 Score=98.75 Aligned_cols=53 Identities=23% Similarity=0.531 Sum_probs=46.5
Q ss_pred CCccccccCCCCCCCeEcCCCCccChhHHHHHHhcC-CCCCCCCCCCCCC-Ccee
Q 018471 297 GVSKCTLCLSNRQDPTATPCGHVFCWNCIMEWCNEK-PECPLCRAPITHS-SLVC 349 (355)
Q Consensus 297 ~~~~C~iC~~~~~~p~~~~CgH~fC~~Ci~~~~~~~-~~CP~Cr~~~~~~-~~~~ 349 (355)
+...|+||++.+.+|+.++|||.||..||..|+... ..||.||.++... .+.+
T Consensus 77 ~~~~C~IC~~~~~~pv~~~CgH~fC~~Ci~~~~~~~~~~CP~Cr~~~~~~~~l~~ 131 (150)
T 1z6u_A 77 QSFMCVCCQELVYQPVTTECFHNVCKDCLQRSFKAQVFSCPACRHDLGQNYIMIP 131 (150)
T ss_dssp HHTBCTTTSSBCSSEEECTTSCEEEHHHHHHHHHTTCCBCTTTCCBCCTTCCCCB
T ss_pred cCCEeecCChhhcCCEEcCCCCchhHHHHHHHHHhCCCcCCCCCccCCCCCCCCC
Confidence 467999999999999999999999999999999865 4899999999876 4443
No 42
>4ap4_A E3 ubiquitin ligase RNF4; ligase-signalling protein complex, chimera; 2.21A {Rattus norvegicus}
Probab=99.04 E-value=3.6e-11 Score=98.48 Aligned_cols=56 Identities=32% Similarity=0.835 Sum_probs=51.5
Q ss_pred CCCccccccCCCCCCC-------eEcCCCCccChhHHHHHHhcCCCCCCCCCCCCCCCceecc
Q 018471 296 PGVSKCTLCLSNRQDP-------TATPCGHVFCWNCIMEWCNEKPECPLCRAPITHSSLVCLY 351 (355)
Q Consensus 296 ~~~~~C~iC~~~~~~p-------~~~~CgH~fC~~Ci~~~~~~~~~CP~Cr~~~~~~~~~~l~ 351 (355)
.+...|+||++.+.++ +.++|||+||..||.+|+..+..||.||.++..++++++|
T Consensus 70 ~~~~~C~iC~~~~~~~~~~~~~~~~~~CgH~fc~~Ci~~~~~~~~~CP~Cr~~~~~~~~~~~~ 132 (133)
T 4ap4_A 70 SGTVSCPICMDGYSEIVQNGRLIVSTECGHVFCSQCLRDSLKNANTCPTCRKKINHKRYHPIY 132 (133)
T ss_dssp SSSCBCTTTCCBHHHHHHTTCCEEEETTSBEEEHHHHHHHHHHCSBCTTTCCBCCGGGEEEEC
T ss_pred CCCCCCCCCCCccccccccCcceEeCCCCChhhHHHHHHHHHcCCCCCCCCCcCChhcceeee
Confidence 4567899999988765 8889999999999999999999999999999999999997
No 43
>2yu4_A E3 SUMO-protein ligase NSE2; SP-ring domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.02 E-value=1.2e-10 Score=90.20 Aligned_cols=56 Identities=21% Similarity=0.466 Sum_probs=48.5
Q ss_pred CCCccccccCCCCCCCeEcC-CCCccChhHHHHHHhcC------CCCCC--CCCC-CCCCCceecc
Q 018471 296 PGVSKCTLCLSNRQDPTATP-CGHVFCWNCIMEWCNEK------PECPL--CRAP-ITHSSLVCLY 351 (355)
Q Consensus 296 ~~~~~C~iC~~~~~~p~~~~-CgH~fC~~Ci~~~~~~~------~~CP~--Cr~~-~~~~~~~~l~ 351 (355)
...+.|+||++.+.+|+.++ |||+||..||..|+... ..||. |+.. +...+++|..
T Consensus 5 ~~~~~CPI~~~~~~dPV~~~~cGh~f~r~cI~~~l~~~~~~~~~~~CP~tgc~~~~l~~~~L~pn~ 70 (94)
T 2yu4_A 5 SSGFTCPITKEEMKKPVKNKVCGHTYEEDAIVRMIESRQKRKKKAYCPQIGCSHTDIRKSDLIQDE 70 (94)
T ss_dssp SSCCBCTTTCSBCSSEEEESSSCCEEEHHHHHHHHHHHHTTTCCBCCCSTTCCCCCBCGGGEEECH
T ss_pred CcEeECcCcCchhcCCEEcCCCCCeecHHHHHHHHHHccCcCCCCCCCcCcCcccccCHhhCcCCH
Confidence 45789999999999999996 99999999999999743 59999 8877 8888888754
No 44
>2vje_B MDM4 protein; proto-oncogene, phosphorylation, alternative splicing, HOST-virus interaction, UBL conjugation pathway, zinc-finger, polymorphism; HET: FLC; 2.20A {Homo sapiens} PDB: 2vjf_B*
Probab=99.02 E-value=8.8e-11 Score=83.98 Aligned_cols=54 Identities=22% Similarity=0.636 Sum_probs=47.6
Q ss_pred CCccccccCCCCCCCeEc--CCCCc-cChhHHHHHHhcCCCCCCCCCCCCCCCceeccC
Q 018471 297 GVSKCTLCLSNRQDPTAT--PCGHV-FCWNCIMEWCNEKPECPLCRAPITHSSLVCLYH 352 (355)
Q Consensus 297 ~~~~C~iC~~~~~~p~~~--~CgH~-fC~~Ci~~~~~~~~~CP~Cr~~~~~~~~~~l~~ 352 (355)
....|+||++...+++.+ ||||. ||+.|+..|......||+||+++. +++++|.
T Consensus 6 ~~~~C~IC~~~~~~~~~~~~pCgH~~~C~~C~~~~~~~~~~CPiCR~~i~--~~i~i~~ 62 (63)
T 2vje_B 6 LLKPCSLCEKRPRDGNIIHGRTGHLVTCFHCARRLKKAGASCPICKKEIQ--LVIKVFI 62 (63)
T ss_dssp GGSBCTTTSSSBSCEEEEETTEEEEEECHHHHHHHHHTTCBCTTTCCBCC--EEEEEEE
T ss_pred cCCCCcccCCcCCCeEEEecCCCCHhHHHHHHHHHHHhCCcCCCcCchhh--ceEEEec
Confidence 457899999999998877 99998 999999999888889999999886 7787774
No 45
>1rmd_A RAG1; V(D)J recombination, antibody, MAD, ring finger, zinc binuclear cluster, zinc finger, DNA-binding protein; 2.10A {Mus musculus} SCOP: g.37.1.1 g.44.1.1
Probab=99.01 E-value=1.1e-10 Score=93.93 Aligned_cols=53 Identities=32% Similarity=0.701 Sum_probs=47.9
Q ss_pred CCccccccCCCCCCCeEcCCCCccChhHHHHHHhc-CCCCCCCCCCCCCCCcee
Q 018471 297 GVSKCTLCLSNRQDPTATPCGHVFCWNCIMEWCNE-KPECPLCRAPITHSSLVC 349 (355)
Q Consensus 297 ~~~~C~iC~~~~~~p~~~~CgH~fC~~Ci~~~~~~-~~~CP~Cr~~~~~~~~~~ 349 (355)
+...|+||++.+.+|+.++|||+||..||..|+.. ...||.||.++...++.+
T Consensus 22 ~~~~C~IC~~~~~~p~~~~CgH~fC~~Ci~~~~~~~~~~CP~Cr~~~~~~~~~~ 75 (116)
T 1rmd_A 22 KSISCQICEHILADPVETSCKHLFCRICILRCLKVMGSYCPSCRYPCFPTDLES 75 (116)
T ss_dssp HHTBCTTTCSBCSSEEECTTSCEEEHHHHHHHHHHTCSBCTTTCCBCCGGGCBC
T ss_pred CCCCCCCCCcHhcCcEEcCCCCcccHHHHHHHHhHCcCcCCCCCCCCCHhhccc
Confidence 46899999999999999999999999999999986 679999999998777654
No 46
>2f42_A STIP1 homology and U-box containing protein 1; chaperone; 2.50A {Danio rerio} PDB: 2c2v_S 2oxq_C
Probab=99.01 E-value=1.5e-10 Score=99.73 Aligned_cols=57 Identities=21% Similarity=0.279 Sum_probs=51.3
Q ss_pred CCCCccccccCCCCCCCeEcCCCCccChhHHHHHHhcC-CCCCCCCCCCCCCCceecc
Q 018471 295 APGVSKCTLCLSNRQDPTATPCGHVFCWNCIMEWCNEK-PECPLCRAPITHSSLVCLY 351 (355)
Q Consensus 295 ~~~~~~C~iC~~~~~~p~~~~CgH~fC~~Ci~~~~~~~-~~CP~Cr~~~~~~~~~~l~ 351 (355)
.++.+.||||++.+.+|+.++|||+||..||..|+... ..||.|+.++...+++|..
T Consensus 103 ip~~f~CPI~~elm~DPV~~~~Ghtfer~~I~~~l~~~~~tcP~t~~~l~~~~L~pN~ 160 (179)
T 2f42_A 103 IPDYLCGKISFELMREPCITPSGITYDRKDIEEHLQRVGHFDPVTRSPLTQDQLIPNL 160 (179)
T ss_dssp CCGGGBCTTTCSBCSSEEECTTSCEEEHHHHHHHHHHTCSBCTTTCCBCCGGGCEECH
T ss_pred CcHhhcccCccccCCCCeECCCCCEECHHHHHHHHHhCCCCCCCCcCCCChhhCcchH
Confidence 35689999999999999999999999999999999753 4799999999998998864
No 47
>3l11_A E3 ubiquitin-protein ligase RNF168; E3 ligase, ring domain, DNA damage, chromatin regulator, CHR protein, DNA repair, metal-binding, nucleus; 2.12A {Homo sapiens}
Probab=99.01 E-value=5e-11 Score=95.71 Aligned_cols=49 Identities=24% Similarity=0.738 Sum_probs=44.0
Q ss_pred CCCccccccCCCCCCCeEcCCCCccChhHHHHHHhc-CCCCCCCCCCCCC
Q 018471 296 PGVSKCTLCLSNRQDPTATPCGHVFCWNCIMEWCNE-KPECPLCRAPITH 344 (355)
Q Consensus 296 ~~~~~C~iC~~~~~~p~~~~CgH~fC~~Ci~~~~~~-~~~CP~Cr~~~~~ 344 (355)
.++..|+||++.+.+|+.++|||.||..||..|+.. ...||.||..+..
T Consensus 13 ~~~~~C~iC~~~~~~p~~~~CgH~fC~~Ci~~~~~~~~~~CP~Cr~~~~~ 62 (115)
T 3l11_A 13 LSECQCGICMEILVEPVTLPCNHTLCKPCFQSTVEKASLCCPFCRRRVSS 62 (115)
T ss_dssp HHHHBCTTTCSBCSSCEECTTSCEECHHHHCCCCCTTTSBCTTTCCBCHH
T ss_pred CCCCCCccCCcccCceeEcCCCCHHhHHHHHHHHhHCcCCCCCCCcccCc
Confidence 357899999999999999999999999999999865 6799999998863
No 48
>1v87_A Deltex protein 2; ring-H2 domain, zinc-binding domain, notch signaling, structural genomics, riken structural genomics/proteomics initiative, RSGI; NMR {Mus musculus} SCOP: g.44.1.1
Probab=98.99 E-value=2.4e-10 Score=91.44 Aligned_cols=48 Identities=21% Similarity=0.582 Sum_probs=40.3
Q ss_pred CCccccccCCCCCCCe------------------EcCCCCccChhHHHHHHh-----cCCCCCCCCCCCCC
Q 018471 297 GVSKCTLCLSNRQDPT------------------ATPCGHVFCWNCIMEWCN-----EKPECPLCRAPITH 344 (355)
Q Consensus 297 ~~~~C~iC~~~~~~p~------------------~~~CgH~fC~~Ci~~~~~-----~~~~CP~Cr~~~~~ 344 (355)
.+..|+||++.+..+. .++|||+||..||..|+. .+..||+||..+..
T Consensus 24 ~~~~C~ICl~~~~~~~~~~~~~~~~~~~~~~~~~~~~C~H~Fh~~Ci~~wl~~~~~~~~~~CP~CR~~~~~ 94 (114)
T 1v87_A 24 PEEDCIICMEKLAVASGYSDMTDSKALGPMVVGRLTKCSHAFHLLCLLAMYCNGNKDGSLQCPSCKTIYGE 94 (114)
T ss_dssp CSCEETTTTEETTSCCSTTTTCCCSSSCSSCCEEESSSCCEECHHHHHHHHHHTCCSSCCBCTTTCCBSSS
T ss_pred CCCcCccCChhhcCcccccccccccccCcccceecCCCCCcccHHHHHHHHHcccCCCCCcCCCCCCccCC
Confidence 3468999999986653 679999999999999994 46799999998864
No 49
>2ecl_A Ring-box protein 2; RNF7, ring domian, zinc-binding domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=98.98 E-value=2e-10 Score=86.34 Aligned_cols=51 Identities=24% Similarity=0.640 Sum_probs=41.7
Q ss_pred CCccccccCCCCCC--------------CeEc-CCCCccChhHHHHHHhcCCCCCCCCCCCCCCCc
Q 018471 297 GVSKCTLCLSNRQD--------------PTAT-PCGHVFCWNCIMEWCNEKPECPLCRAPITHSSL 347 (355)
Q Consensus 297 ~~~~C~iC~~~~~~--------------p~~~-~CgH~fC~~Ci~~~~~~~~~CP~Cr~~~~~~~~ 347 (355)
++..|+||++.+.+ ++.+ +|||.||..||..|+..+..||+||+++..+++
T Consensus 14 ~~~~C~IC~~~~~~~C~iC~~~~~~~~~~~~~~~C~H~FH~~Ci~~Wl~~~~~CP~CR~~~~~~~~ 79 (81)
T 2ecl_A 14 ECDTCAICRVQVMDACLRCQAENKQEDCVVVWGECNHSFHNCCMSLWVKQNNRCPLCQQDWVVQRI 79 (81)
T ss_dssp CCSCBTTTTBCTTSCCTTHHHHTCTTTCCEEEETTSCEEEHHHHHHHTTTCCBCTTTCCBCCEEEE
T ss_pred CCCCCcccChhhhccCcccccccCCCceEEEeCCCCCccChHHHHHHHHhCCCCCCcCCCcchhhc
Confidence 35678999888765 3444 599999999999999999999999999876543
No 50
>1bor_A Transcription factor PML; proto-oncogene, nuclear bodies (PODS), leukemia, transcription regulation; NMR {Homo sapiens} SCOP: g.44.1.1
Probab=98.97 E-value=1.7e-10 Score=80.41 Aligned_cols=47 Identities=28% Similarity=0.740 Sum_probs=41.1
Q ss_pred CCCccccccCCCCCCCeEcCCCCccChhHHHHHHhcCCCCCCCCCCCCCC
Q 018471 296 PGVSKCTLCLSNRQDPTATPCGHVFCWNCIMEWCNEKPECPLCRAPITHS 345 (355)
Q Consensus 296 ~~~~~C~iC~~~~~~p~~~~CgH~fC~~Ci~~~~~~~~~CP~Cr~~~~~~ 345 (355)
.+...|+||++.+.+|+.++|||.||..|+.. ....||.||+.+...
T Consensus 4 ~~~~~C~IC~~~~~~p~~l~CgH~fC~~Ci~~---~~~~CP~Cr~~~~~~ 50 (56)
T 1bor_A 4 FQFLRCQQCQAEAKCPKLLPCLHTLCSGCLEA---SGMQCPICQAPWPLG 50 (56)
T ss_dssp CCCSSCSSSCSSCBCCSCSTTSCCSBTTTCSS---SSSSCSSCCSSSSCC
T ss_pred ccCCCceEeCCccCCeEEcCCCCcccHHHHcc---CCCCCCcCCcEeecC
Confidence 45788999999999999999999999999976 357899999988743
No 51
>1jm7_B BARD1, BRCA1-associated ring domain protein 1; ring finger, zinc-binding protein, heterodimer, ubiquitin ligase, antitumor; NMR {Homo sapiens} SCOP: g.44.1.1
Probab=98.97 E-value=1.4e-10 Score=93.49 Aligned_cols=54 Identities=26% Similarity=0.672 Sum_probs=47.7
Q ss_pred CCCccccccCCCCCCCeEc-CCCCccChhHHHHHHhcCCCCCCCCCCCCCCCceecc
Q 018471 296 PGVSKCTLCLSNRQDPTAT-PCGHVFCWNCIMEWCNEKPECPLCRAPITHSSLVCLY 351 (355)
Q Consensus 296 ~~~~~C~iC~~~~~~p~~~-~CgH~fC~~Ci~~~~~~~~~CP~Cr~~~~~~~~~~l~ 351 (355)
.+...|+||++.+.+|+.+ +|||.||..||..|+. ..||.||.++...++.+.+
T Consensus 20 ~~~~~C~IC~~~~~~pv~~~~CgH~fC~~Ci~~~~~--~~CP~Cr~~~~~~~~~~n~ 74 (117)
T 1jm7_B 20 EKLLRCSRCTNILREPVCLGGCEHIFCSNCVSDCIG--TGCPVCYTPAWIQDLKINR 74 (117)
T ss_dssp HHTTSCSSSCSCCSSCBCCCSSSCCBCTTTGGGGTT--TBCSSSCCBCSCSSCCCCH
T ss_pred hhCCCCCCCChHhhCccEeCCCCCHHHHHHHHHHhc--CCCcCCCCcCccccccccH
Confidence 3578999999999999999 9999999999999987 7899999999877766543
No 52
>2ckl_B Ubiquitin ligase protein RING2; BMI1, RING1B, polycomb, E3-ligase, nuclear protein, chromosomal protein, transcription regulation; 2.0A {Mus musculus} PDB: 3rpg_C 2h0d_B
Probab=98.96 E-value=3.1e-10 Score=96.96 Aligned_cols=49 Identities=31% Similarity=0.725 Sum_probs=44.2
Q ss_pred CCCccccccCCCCCCCeEc-CCCCccChhHHHHHHhc-CCCCCCCCCCCCC
Q 018471 296 PGVSKCTLCLSNRQDPTAT-PCGHVFCWNCIMEWCNE-KPECPLCRAPITH 344 (355)
Q Consensus 296 ~~~~~C~iC~~~~~~p~~~-~CgH~fC~~Ci~~~~~~-~~~CP~Cr~~~~~ 344 (355)
.+...|+||++.+.+|+.+ +|||+||..||..|+.. ...||.||.++..
T Consensus 52 ~~~~~C~IC~~~~~~p~~~~~CgH~fC~~Ci~~~~~~~~~~CP~Cr~~~~~ 102 (165)
T 2ckl_B 52 HSELMCPICLDMLKNTMTTKECLHRFCADCIITALRSGNKECPTCRKKLVS 102 (165)
T ss_dssp HHHHBCTTTSSBCSSEEEETTTCCEEEHHHHHHHHHTTCCBCTTTCCBCCS
T ss_pred CCCCCCcccChHhhCcCEeCCCCChhHHHHHHHHHHhCcCCCCCCCCcCCC
Confidence 3567999999999999987 99999999999999986 7889999999864
No 53
>2y1n_A E3 ubiquitin-protein ligase; ligase-transferase complex, ubiquitin ring E3 ligase; HET: PTR; 2.00A {Homo sapiens} PDB: 2y1m_A* 4a4c_A* 4a4b_A* 1fbv_A* 3vgo_A 4a49_A* 2k4d_A 2ldr_A*
Probab=98.96 E-value=3e-10 Score=108.75 Aligned_cols=151 Identities=21% Similarity=0.362 Sum_probs=85.6
Q ss_pred ccccchhhhhhcCc-----eEEEecCCCCCCchhHHHHHHHHHHHHHHHhhhhhhcccccccccccccccccccccCC-C
Q 018471 188 EGLYYHISKRTAGI-----RYVFIGKPTNQRPRYQILGVFLLIQLCIIAAEGLRRSNLSSIASSVHHTSLGFQQASTG-R 261 (355)
Q Consensus 188 ~G~Yy~l~kRi~gi-----ryv~~~~~~~~~~sy~~LG~lll~ql~~~~~~~~r~~~~~~~~~~~~~~~~~~~~~~~~-~ 261 (355)
.-+|+++.+|+-|. .|++.- ...+.++.++|++++.|.+++.++..+........ +. ..+.+.-+.+ .
T Consensus 225 f~ty~ev~~~Lk~~~~~~GsYIfRl--s~trlGq~~LG~v~~~q~ivqti~~~ksl~~~l~d-~~---~~g~yl~p~g~~ 298 (389)
T 2y1n_A 225 FLTYDEVKARLQKFIHKPGSYIFRL--SCTRLGQWAIGYVTADGNILQTIPHNKPLFQALID-GF---REGFYLFPDGRN 298 (389)
T ss_dssp TCCHHHHHHHHGGGTTSTTEEEEEE--CSSSTTSEEEEEECTTSCEEEECCCSSCHHHHHHH-HH---HTTSSCEETTCS
T ss_pred cccHHHHHHHHHHhhccCCceEecc--CcchHhHHHHHHHHHHHHHHHHHHhHHHHHHHHhh-hc---ccCccccCCCCc
Confidence 34788899999999 888853 33456677888887777766655443332221000 00 0000000000 0
Q ss_pred CCcccCCCCCCCCCCCCCCCccccCCCCc-c--cCCCCCCccccccCCCCCCCeEcCCCCccChhHHHHHHh-cCCCCCC
Q 018471 262 GLPVLNEEGSLIPSESDKGGWVLDSTSTS-E--SQAAPGVSKCTLCLSNRQDPTATPCGHVFCWNCIMEWCN-EKPECPL 337 (355)
Q Consensus 262 ~~~~l~~~~~~~~~~~~~~~~~~~~~~~~-~--~~~~~~~~~C~iC~~~~~~p~~~~CgH~fC~~Ci~~~~~-~~~~CP~ 337 (355)
..+.++. ..+.. .....+..... + .........|+||++.+.+|+.+||||+||+.|+..|+. ....||.
T Consensus 299 ~~p~l~~----l~~~~--~~~~i~ls~e~~~~~~e~~~~~~~C~ICle~~~~pv~lpCGH~FC~~Ci~~wl~~~~~~CP~ 372 (389)
T 2y1n_A 299 QNPDLTG----LCEPT--PQDHIKVTQEQYELYCEMGSTFQLCKICAENDKDVKIEPCGHLMCTSCLTSWQESEGQGCPF 372 (389)
T ss_dssp CCCCCTT----TTC---------CCCHHHHHHHHHTTTSSSBCTTTSSSBCCEEEETTCCEECHHHHHHHHHHTCSBCTT
T ss_pred CCccccc----ccccc--ccccccccHHHHHHHHhhcCCCCCCCccCcCCCCeEEeCCCChhhHHHHHHHHhcCCCCCCC
Confidence 0000000 00000 00000000000 0 012234579999999999999999999999999999998 6789999
Q ss_pred CCCCCCCCCceec
Q 018471 338 CRAPITHSSLVCL 350 (355)
Q Consensus 338 Cr~~~~~~~~~~l 350 (355)
||.++....++.+
T Consensus 373 CR~~i~~~~~i~v 385 (389)
T 2y1n_A 373 CRCEIKGTEPIVV 385 (389)
T ss_dssp TCCBCCEEEECSC
T ss_pred CCCccCCceeEec
Confidence 9999987666544
No 54
>2bay_A PRE-mRNA splicing factor PRP19; U-BOX, ubiquitin ligase, E3 ligase; 1.50A {Saccharomyces cerevisiae} SCOP: g.44.1.2 PDB: 1n87_A
Probab=98.96 E-value=2.3e-10 Score=81.15 Aligned_cols=55 Identities=11% Similarity=0.261 Sum_probs=51.1
Q ss_pred CccccccCCCCCCCeEc-CCCCccChhHHHHHHhcCCCCCCCCCCCCCCCceeccC
Q 018471 298 VSKCTLCLSNRQDPTAT-PCGHVFCWNCIMEWCNEKPECPLCRAPITHSSLVCLYH 352 (355)
Q Consensus 298 ~~~C~iC~~~~~~p~~~-~CgH~fC~~Ci~~~~~~~~~CP~Cr~~~~~~~~~~l~~ 352 (355)
.+.|+||++.+.+|+.+ +|||+||..||.+|+..+..||.+++++...+++|+..
T Consensus 3 ~~~CpIs~~~m~dPV~~~~sG~~yer~~I~~~l~~~~~cP~t~~~L~~~~Lip~~~ 58 (61)
T 2bay_A 3 HMLCAISGKVPRRPVLSPKSRTIFEKSLLEQYVKDTGNDPITNEPLSIEEIVEIVP 58 (61)
T ss_dssp -CCCTTTCSCCSSEEEETTTTEEEEHHHHHHHHHHHSBCTTTCCBCCGGGCEECCC
T ss_pred eEEecCCCCCCCCCEEeCCCCcEEcHHHHHHHHHhCCCCcCCcCCCChhhcEECcc
Confidence 47899999999999999 99999999999999987778999999999999999874
No 55
>4ic3_A E3 ubiquitin-protein ligase XIAP; ring domain, zinc-finger, E3 ligase; 1.78A {Homo sapiens} PDB: 4ic2_A
Probab=98.93 E-value=2.2e-10 Score=84.57 Aligned_cols=49 Identities=27% Similarity=0.647 Sum_probs=43.5
Q ss_pred CCccccccCCCCCCCeEcCCCCc-cChhHHHHHHhcCCCCCCCCCCCCCCCceecc
Q 018471 297 GVSKCTLCLSNRQDPTATPCGHV-FCWNCIMEWCNEKPECPLCRAPITHSSLVCLY 351 (355)
Q Consensus 297 ~~~~C~iC~~~~~~p~~~~CgH~-fC~~Ci~~~~~~~~~CP~Cr~~~~~~~~~~l~ 351 (355)
++..|+||++.+.+++.+||||. ||..|+..| ..||.||+++. ..+++|
T Consensus 23 ~~~~C~iC~~~~~~~~~~pCgH~~~C~~C~~~~----~~CP~Cr~~i~--~~~~i~ 72 (74)
T 4ic3_A 23 EEKLCKICMDRNIAIVFVPCGHLVTCKQCAEAV----DKCPMCYTVIT--FKQKIL 72 (74)
T ss_dssp HHTBCTTTSSSBCCEEEETTCCBCCCHHHHTTC----SBCTTTCCBCS--EEEECB
T ss_pred cCCCCCCCCCCCCCEEEcCCCChhHHHHhhhcC----ccCCCcCcCcc--CcEEEe
Confidence 46799999999999999999999 999999877 88999999887 556665
No 56
>1e4u_A Transcriptional repressor NOT4; gene regulation, transcriptional control; NMR {Homo sapiens} SCOP: g.44.1.1 PDB: 1ur6_B
Probab=98.92 E-value=1.1e-09 Score=81.57 Aligned_cols=53 Identities=30% Similarity=0.655 Sum_probs=42.6
Q ss_pred CCCccccccCCCCC--CCeEcC--CCCccChhHHHHHHh-cCCCCCCCCCCCCCCCce
Q 018471 296 PGVSKCTLCLSNRQ--DPTATP--CGHVFCWNCIMEWCN-EKPECPLCRAPITHSSLV 348 (355)
Q Consensus 296 ~~~~~C~iC~~~~~--~p~~~~--CgH~fC~~Ci~~~~~-~~~~CP~Cr~~~~~~~~~ 348 (355)
.++..|+||++.+. ++...| |||.||..|+..+.. ....||.||+++....+.
T Consensus 9 ~~~~~CpICle~~~~~d~~~~p~~CGH~fC~~Cl~~~~~~~~~~CP~CR~~~~~~~~~ 66 (78)
T 1e4u_A 9 EDPVECPLCMEPLEIDDINFFPCTCGYQICRFCWHRIRTDENGLCPACRKPYPEDPAV 66 (78)
T ss_dssp CCCCBCTTTCCBCCTTTTTCCSSTTSCCCCHHHHHHHTTSSCSBCTTTCCBCSSCSSC
T ss_pred ccCCcCCccCccCccccccccccCCCCCcCHHHHHHHHhcCCCCCCCCCCccCCCchh
Confidence 45789999999874 345555 999999999998864 457899999999876653
No 57
>2ea5_A Cell growth regulator with ring finger domain protein 1; CGRRF1, ring domain, zinc-binding domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=98.91 E-value=2e-09 Score=78.03 Aligned_cols=52 Identities=23% Similarity=0.610 Sum_probs=44.6
Q ss_pred CCCCccccccCCCCCCCeEcCCCCc-cChhHHHHHHhcCCCCCCCCCCCCCCCceeccC
Q 018471 295 APGVSKCTLCLSNRQDPTATPCGHV-FCWNCIMEWCNEKPECPLCRAPITHSSLVCLYH 352 (355)
Q Consensus 295 ~~~~~~C~iC~~~~~~p~~~~CgH~-fC~~Ci~~~~~~~~~CP~Cr~~~~~~~~~~l~~ 352 (355)
..+...|+||++...+++.+||||. ||+.|+.. ...||+||.++. ..+++|.
T Consensus 12 ~~~~~~C~IC~~~~~~~v~~pCgH~~~C~~C~~~----~~~CP~CR~~i~--~~~~i~~ 64 (68)
T 2ea5_A 12 EENSKDCVVCQNGTVNWVLLPCRHTCLCDGCVKY----FQQCPMCRQFVQ--ESFALSG 64 (68)
T ss_dssp CCCSSCCSSSSSSCCCCEETTTTBCCSCTTHHHH----CSSCTTTCCCCC--CEECCCS
T ss_pred CCCCCCCCCcCcCCCCEEEECCCChhhhHHHHhc----CCCCCCCCcchh--ceEEeec
Confidence 3457899999999999999999999 99999973 478999999887 5677764
No 58
>3knv_A TNF receptor-associated factor 2; cross-brace, alternative splicing, apoptosis, cytoplasm, metal-binding, UBL conjugation, zinc, zinc-finger; 1.90A {Homo sapiens}
Probab=98.86 E-value=3.8e-10 Score=93.94 Aligned_cols=49 Identities=20% Similarity=0.509 Sum_probs=43.8
Q ss_pred CCCCccccccCCCCCCCeEcCCCCccChhHHHHHHhcC-CCCCCCCCCCC
Q 018471 295 APGVSKCTLCLSNRQDPTATPCGHVFCWNCIMEWCNEK-PECPLCRAPIT 343 (355)
Q Consensus 295 ~~~~~~C~iC~~~~~~p~~~~CgH~fC~~Ci~~~~~~~-~~CP~Cr~~~~ 343 (355)
..+...|+||++.+.+|+.++|||.||..||..|+... ..||.||.++.
T Consensus 28 l~~~~~C~IC~~~~~~pv~~~CgH~FC~~Ci~~~~~~~~~~CP~Cr~~~~ 77 (141)
T 3knv_A 28 LEAKYLCSACRNVLRRPFQAQCGHRYCSFCLASILSSGPQNCAACVHEGI 77 (141)
T ss_dssp CCGGGBCTTTCSBCSSEEECTTSCEEEHHHHHHHGGGSCEECHHHHHTTC
T ss_pred CCcCcCCCCCChhhcCcEECCCCCccCHHHHHHHHhcCCCCCCCCCCccc
Confidence 35678999999999999999999999999999999765 48999999764
No 59
>3dpl_R Ring-box protein 1; ubiquitin, NEDD8, cullin, HOST-virus interaction, receptor, UBL conjugation, UBL conjugation pathway, acetylation, cytoplasm; 2.60A {Homo sapiens} SCOP: g.44.1.1 PDB: 3dqv_R 3rtr_B 4f52_B 1u6g_B 2hye_D* 4a0c_D 4a0l_F* 1ldj_B 1ldk_C 2lgv_A
Probab=98.84 E-value=1.7e-09 Score=85.48 Aligned_cols=48 Identities=27% Similarity=0.659 Sum_probs=41.0
Q ss_pred CCccccccCCCCCCC------------------eEcCCCCccChhHHHHHHhcCCCCCCCCCCCCC
Q 018471 297 GVSKCTLCLSNRQDP------------------TATPCGHVFCWNCIMEWCNEKPECPLCRAPITH 344 (355)
Q Consensus 297 ~~~~C~iC~~~~~~p------------------~~~~CgH~fC~~Ci~~~~~~~~~CP~Cr~~~~~ 344 (355)
++..|+||++.+..+ +.++|||.||..||..|+..+..||+||+++..
T Consensus 36 ~~d~CaIC~~~~~~~c~~C~~~~~~~~~~~~~~~~~~C~H~FH~~Ci~~Wl~~~~~CP~Cr~~~~~ 101 (106)
T 3dpl_R 36 VVDNCAICRNHIMDLCIECQANQASATSEECTVAWGVCNHAFHFHCISRWLKTRQVCPLDNREWEF 101 (106)
T ss_dssp CSCCCSSSCSCTTSCCTTHHHHTTCC---CCCEEEETTSCEEEHHHHHHHHTTCSBCSSSCSBCCE
T ss_pred CCCCCccCChhHhCcCchhhccccccCCccceEeecccCcEECHHHHHHHHHcCCcCcCCCCccee
Confidence 356799999988754 346999999999999999999999999998753
No 60
>3hcs_A TNF receptor-associated factor 6; cross-brace, beta-BETA-alpha, coiled coil, cytoplasm, metal- binding, UBL conjugation, UBL conjugation pathway; 2.20A {Homo sapiens}
Probab=98.82 E-value=1.4e-09 Score=93.37 Aligned_cols=55 Identities=27% Similarity=0.669 Sum_probs=48.7
Q ss_pred CCCCccccccCCCCCCCeEcCCCCccChhHHHHHHhcC-CCCCCCCCCCCCCCcee
Q 018471 295 APGVSKCTLCLSNRQDPTATPCGHVFCWNCIMEWCNEK-PECPLCRAPITHSSLVC 349 (355)
Q Consensus 295 ~~~~~~C~iC~~~~~~p~~~~CgH~fC~~Ci~~~~~~~-~~CP~Cr~~~~~~~~~~ 349 (355)
..+...|+||++.+.+|+.++|||+||..||..|+... ..||.||.++...++.+
T Consensus 15 ~~~~~~C~IC~~~~~~pv~~~CgH~fC~~Ci~~~~~~~~~~CP~Cr~~~~~~~~~~ 70 (170)
T 3hcs_A 15 LESKYECPICLMALREAVQTPCGHRFCKACIIKSIRDAGHKCPVDNEILLENQLFP 70 (170)
T ss_dssp CCGGGBCTTTCSBCSSEEECTTSCEEEHHHHHHHHHHHCSBCTTTCCBCCGGGCEE
T ss_pred CCCCCCCCCCChhhcCcEECCCCCHHHHHHHHHHHHhCCCCCCCCccCcchhhhhh
Confidence 35678999999999999999999999999999999754 59999999998877665
No 61
>2ecg_A Baculoviral IAP repeat-containing protein 4; BIRC4, ring domian, zinc-binding domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=98.82 E-value=1.9e-09 Score=79.65 Aligned_cols=49 Identities=27% Similarity=0.706 Sum_probs=41.9
Q ss_pred CCccccccCCCCCCCeEcCCCCc-cChhHHHHHHhcCCCCCCCCCCCCCCCceecc
Q 018471 297 GVSKCTLCLSNRQDPTATPCGHV-FCWNCIMEWCNEKPECPLCRAPITHSSLVCLY 351 (355)
Q Consensus 297 ~~~~C~iC~~~~~~p~~~~CgH~-fC~~Ci~~~~~~~~~CP~Cr~~~~~~~~~~l~ 351 (355)
+...|+||++.+.+|+.+||||. ||..|+.. ...||.||.++.. .+++|
T Consensus 24 ~~~~C~IC~~~~~~~~~~pCgH~~~C~~C~~~----~~~CP~Cr~~i~~--~~~i~ 73 (75)
T 2ecg_A 24 EEKLCKICMDRNIAIVFVPCGHLVTCKQCAEA----VDKCPMCYTVITF--KQKIF 73 (75)
T ss_dssp HHHSCSSSCSSCCCBCCSSSCCCCBCHHHHHH----CSBCTTTCCBCCC--CCBCC
T ss_pred CCCCCCcCCCCCCCEEEecCCCHHHHHHHhhC----CCCCccCCceecC--cEEEe
Confidence 46789999999999999999999 99999963 4789999998874 55555
No 62
>4a0k_B E3 ubiquitin-protein ligase RBX1; ligase-DNA-binding protein-DNA complex, DNA-binding protein- complex; HET: DNA 3DR; 5.93A {Mus musculus}
Probab=98.66 E-value=3.2e-09 Score=85.17 Aligned_cols=50 Identities=26% Similarity=0.628 Sum_probs=0.8
Q ss_pred CCccccccCCCCCCCe------------------EcCCCCccChhHHHHHHhcCCCCCCCCCCCCCCC
Q 018471 297 GVSKCTLCLSNRQDPT------------------ATPCGHVFCWNCIMEWCNEKPECPLCRAPITHSS 346 (355)
Q Consensus 297 ~~~~C~iC~~~~~~p~------------------~~~CgH~fC~~Ci~~~~~~~~~CP~Cr~~~~~~~ 346 (355)
++..|+||++.+..+. .++|+|.||..||..|+..+..||+||+++..++
T Consensus 47 ~~d~CaICl~~~~~~c~~C~~~~~~~~~~~~~v~~~~C~H~FH~~CI~~Wl~~~~~CP~Cr~~~~~~k 114 (117)
T 4a0k_B 47 VVDNCAICRNHIMDLCIECQANQASATSEECTVAWGVCNHAFHFHCISRWLKTRQVCPLDNREWEFQK 114 (117)
T ss_dssp CC------------------------------------------------------------------
T ss_pred CCCcCeECChhhcCcChhhhcccccccccccccccCCcCceEcHHHHHHHHHcCCcCCCCCCeeeeec
Confidence 3468999999886531 2489999999999999999999999999876543
No 63
>2yho_A E3 ubiquitin-protein ligase mylip; ligase, E2 ligase-E3 ligase complex, ring zinc-finger, UBL conjugation pathway; 2.10A {Homo sapiens} PDB: 2yhn_A
Probab=98.65 E-value=5.9e-09 Score=77.87 Aligned_cols=49 Identities=31% Similarity=0.852 Sum_probs=41.8
Q ss_pred CCccccccCCCCCCCeEcCCCCc-cChhHHHHHHhcCCCCCCCCCCCCCCCceecc
Q 018471 297 GVSKCTLCLSNRQDPTATPCGHV-FCWNCIMEWCNEKPECPLCRAPITHSSLVCLY 351 (355)
Q Consensus 297 ~~~~C~iC~~~~~~p~~~~CgH~-fC~~Ci~~~~~~~~~CP~Cr~~~~~~~~~~l~ 351 (355)
+...|+||++...+++.+||||. ||..|+..| ..||.||.++.. .+.+|
T Consensus 17 ~~~~C~IC~~~~~~~v~~pCgH~~~C~~C~~~~----~~CP~Cr~~i~~--~~~i~ 66 (79)
T 2yho_A 17 EAMLCMVCCEEEINSTFCPCGHTVCCESCAAQL----QSCPVCRSRVEH--VQHVY 66 (79)
T ss_dssp HHTBCTTTSSSBCCEEEETTCBCCBCHHHHTTC----SBCTTTCCBCCE--EEECB
T ss_pred CCCEeEEeCcccCcEEEECCCCHHHHHHHHHhc----CcCCCCCchhhC--eEEEE
Confidence 45789999999999999999999 999999765 499999998873 45555
No 64
>3htk_C E3 SUMO-protein ligase MMS21; SUMO E3 ligase, SPL-ring, ring, ATP-binding, chromosomal protein, coiled coil, DNA damage; 2.31A {Saccharomyces cerevisiae}
Probab=98.64 E-value=7.5e-09 Score=93.51 Aligned_cols=55 Identities=20% Similarity=0.413 Sum_probs=48.9
Q ss_pred CCCccccccCCCCCCCeEc-CCCCccChhHHHHHHhcC--CCCCC--CCCCCCCCCceec
Q 018471 296 PGVSKCTLCLSNRQDPTAT-PCGHVFCWNCIMEWCNEK--PECPL--CRAPITHSSLVCL 350 (355)
Q Consensus 296 ~~~~~C~iC~~~~~~p~~~-~CgH~fC~~Ci~~~~~~~--~~CP~--Cr~~~~~~~~~~l 350 (355)
..+..||||++.+.+|+.. .|||+||..||..|+... ..||. |++.+...++++.
T Consensus 179 ~~el~CPIcl~~f~DPVts~~CGHsFcR~cI~~~~~~~~~~~CPvtGCr~~l~~~dL~pN 238 (267)
T 3htk_C 179 KIELTCPITCKPYEAPLISRKCNHVFDRDGIQNYLQGYTTRDCPQAACSQVVSMRDFVRD 238 (267)
T ss_dssp BCCSBCTTTSSBCSSEEEESSSCCEEEHHHHHHHSTTCSCEECSGGGCSCEECGGGEEEC
T ss_pred ceeeECcCccCcccCCeeeCCCCCcccHHHHHHHHHhCCCCCCCcccccCcCchhhCCcC
Confidence 4678999999999999985 999999999999998754 58999 9999998888874
No 65
>3t6p_A Baculoviral IAP repeat-containing protein 2; ring, BIR, CARD, UBA, apoptosis, ubiquitin ligase, SMAC/ ubiquitin, caspase, IAP family, SMAC mimetic; 1.90A {Homo sapiens} PDB: 1qbh_A 2l9m_A 3eb5_A 3eb6_A 4auq_B
Probab=98.52 E-value=2e-08 Score=95.50 Aligned_cols=51 Identities=27% Similarity=0.748 Sum_probs=44.0
Q ss_pred CCCccccccCCCCCCCeEcCCCCc-cChhHHHHHHhcCCCCCCCCCCCCCCCceeccC
Q 018471 296 PGVSKCTLCLSNRQDPTATPCGHV-FCWNCIMEWCNEKPECPLCRAPITHSSLVCLYH 352 (355)
Q Consensus 296 ~~~~~C~iC~~~~~~p~~~~CgH~-fC~~Ci~~~~~~~~~CP~Cr~~~~~~~~~~l~~ 352 (355)
.++..|+||++.+.+|+.+||||. ||..|+..| ..||.||.++. ..+.+|-
T Consensus 293 ~~~~~C~IC~~~~~~~v~lpCgH~~fC~~C~~~~----~~CP~CR~~i~--~~~~i~~ 344 (345)
T 3t6p_A 293 QEERTCKVCMDKEVSVVFIPCGHLVVCQECAPSL----RKCPICRGIIK--GTVRTFL 344 (345)
T ss_dssp HTTCBCTTTSSSBCCEEEETTCCEEECTTTGGGC----SBCTTTCCBCC--EEEECC-
T ss_pred cCCCCCCccCCcCCceEEcCCCChhHhHHHHhcC----CcCCCCCCCcc--CeEEeec
Confidence 356899999999999999999999 999999876 78999999887 5666663
No 66
>2d8s_A Cellular modulator of immune recognition; C-MIR, march8, ring domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=98.52 E-value=8.6e-08 Score=71.64 Aligned_cols=49 Identities=24% Similarity=0.689 Sum_probs=41.2
Q ss_pred CCCccccccCCCCC--CCeEcCCC-----CccChhHHHHHHhcC--CCCCCCCCCCCC
Q 018471 296 PGVSKCTLCLSNRQ--DPTATPCG-----HVFCWNCIMEWCNEK--PECPLCRAPITH 344 (355)
Q Consensus 296 ~~~~~C~iC~~~~~--~p~~~~Cg-----H~fC~~Ci~~~~~~~--~~CP~Cr~~~~~ 344 (355)
.+...|.||++.+. ++..+||+ |.|+..||..|+..+ ..||+||..+..
T Consensus 13 ~~~~~C~IC~~~~~~~~~l~~pC~C~Gs~h~fH~~Cl~~Wl~~~~~~~CplCr~~~~~ 70 (80)
T 2d8s_A 13 SSQDICRICHCEGDDESPLITPCHCTGSLHFVHQACLQQWIKSSDTRCCELCKYEFIM 70 (80)
T ss_dssp TTSCCCSSSCCCCCSSSCEECSSSCCSSSCCEETTHHHHHHHHHCCSBCSSSCCBCCC
T ss_pred CCCCCCeEcCccccCCCeeEeccccCCcCCeeCHHHHHHHHhhCCCCCCCCCCCeeec
Confidence 45678999998764 57788996 999999999999754 599999999875
No 67
>1wim_A KIAA0161 protein; ring finger domain, UBCM4-interacting protein 4, UIP4, structural genomics, riken structural genomics/proteomics initiative, RSGI; NMR {Homo sapiens} SCOP: g.44.1.1
Probab=98.33 E-value=6.9e-08 Score=74.38 Aligned_cols=52 Identities=27% Similarity=0.666 Sum_probs=40.6
Q ss_pred CCccccccCCCCCCCeEc---CCCCccChhHHHHHHhc--------CCCCCC--CCCC--CCCCCce
Q 018471 297 GVSKCTLCLSNRQDPTAT---PCGHVFCWNCIMEWCNE--------KPECPL--CRAP--ITHSSLV 348 (355)
Q Consensus 297 ~~~~C~iC~~~~~~p~~~---~CgH~fC~~Ci~~~~~~--------~~~CP~--Cr~~--~~~~~~~ 348 (355)
+...|+||++.+..+..+ +|||.||..|+..++.. ...||. |+.. +....+.
T Consensus 4 ~~~~C~IC~~~~~~~~~~~l~~CgH~FC~~Cl~~~~~~~i~~g~~~~i~CP~~~C~~~~~~~~~~i~ 70 (94)
T 1wim_A 4 GSSGCKLCLGEYPVEQMTTIAQCQCIFCTLCLKQYVELLIKEGLETAISCPDAACPKQGHLQENEIE 70 (94)
T ss_dssp SBCCCSSSCCCCBGGGEEEETTTTEEEEHHHHHHHHHHHHHHCSCCCEECSCTTCSSCCEECHHHHH
T ss_pred CCcCCcccCcccccccceEcCCCCCcccHHHHHHHHHHHhhcCCcccccCccccCCCCCccCHHHHH
Confidence 467899999998877543 79999999999998752 248999 9998 6654443
No 68
>2ct0_A Non-SMC element 1 homolog; ring domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=98.13 E-value=3.2e-06 Score=61.88 Aligned_cols=48 Identities=25% Similarity=0.638 Sum_probs=39.6
Q ss_pred CCccccccCCCCCCCe-EcCCCCccChhHHHHHHhcC--CCCCCCCCCCCC
Q 018471 297 GVSKCTLCLSNRQDPT-ATPCGHVFCWNCIMEWCNEK--PECPLCRAPITH 344 (355)
Q Consensus 297 ~~~~C~iC~~~~~~p~-~~~CgH~fC~~Ci~~~~~~~--~~CP~Cr~~~~~ 344 (355)
....|+||.+.+.... ...|+|.|+..||..|++.. ..||+|+.+...
T Consensus 14 ~i~~C~IC~~~i~~g~~C~~C~h~fH~~Ci~kWl~~~~~~~CP~Cr~~w~~ 64 (74)
T 2ct0_A 14 AVKICNICHSLLIQGQSCETCGIRMHLPCVAKYFQSNAEPRCPHCNDYWPH 64 (74)
T ss_dssp SSCBCSSSCCBCSSSEECSSSCCEECHHHHHHHSTTCSSCCCTTTCSCCCS
T ss_pred CCCcCcchhhHcccCCccCCCCchhhHHHHHHHHHhcCCCCCCCCcCcCCC
Confidence 3568999999876433 34899999999999999866 899999987753
No 69
>3vk6_A E3 ubiquitin-protein ligase hakai; HYB, phosphotyrosine binding domain; 1.90A {Mus musculus}
Probab=98.06 E-value=2.2e-06 Score=65.57 Aligned_cols=45 Identities=29% Similarity=0.719 Sum_probs=37.2
Q ss_pred cccccCCCCCC-CeEcCCCCccChhHHHHHHh-cCCCCCCCCCCCCC
Q 018471 300 KCTLCLSNRQD-PTATPCGHVFCWNCIMEWCN-EKPECPLCRAPITH 344 (355)
Q Consensus 300 ~C~iC~~~~~~-p~~~~CgH~fC~~Ci~~~~~-~~~~CP~Cr~~~~~ 344 (355)
-|+.|.-++.. ...+||+|+||++|+..|.+ ....||.|+.++..
T Consensus 3 fC~~C~~Pi~iygRmIPCkHvFCydCa~~~~~~~~k~Cp~C~~~V~r 49 (101)
T 3vk6_A 3 FCDKCGLPIKVYGRMIPCKHVFCYDCAILHEKKGDKMCPGCSDPVQR 49 (101)
T ss_dssp BCTTTCSBCSEEEEEETTCCEEEHHHHHHHHHTTCCBCTTTCCBCSE
T ss_pred ecCccCCCeEEEeeeccccccHHHHHHHHHHhccCCCCcCcCCeeee
Confidence 58888877664 45679999999999999975 56899999998874
No 70
>1vyx_A ORF K3, K3RING; zinc-binding protein, ring domain, cross-brace motif; NMR {Human herpesvirus 8} SCOP: g.44.1.3
Probab=97.80 E-value=1.7e-05 Score=55.67 Aligned_cols=49 Identities=18% Similarity=0.527 Sum_probs=39.3
Q ss_pred CCCccccccCCCCCCCeEcCCC--C---ccChhHHHHHHhc--CCCCCCCCCCCCC
Q 018471 296 PGVSKCTLCLSNRQDPTATPCG--H---VFCWNCIMEWCNE--KPECPLCRAPITH 344 (355)
Q Consensus 296 ~~~~~C~iC~~~~~~p~~~~Cg--H---~fC~~Ci~~~~~~--~~~CP~Cr~~~~~ 344 (355)
++...|.||++...++...||. + .|+..|+..|+.. +..||+|+.++..
T Consensus 4 ~~~~~CrIC~~~~~~~l~~PC~C~gs~~~~H~~Cl~~W~~~~~~~~C~~C~~~~~~ 59 (60)
T 1vyx_A 4 EDVPVCWICNEELGNERFRACGCTGELENVHRSCLSTWLTISRNTACQICGVVYNT 59 (60)
T ss_dssp CSCCEETTTTEECSCCCCCSCCCSSGGGSCCHHHHHHHHHHHTCSBCTTTCCBCCC
T ss_pred CCCCEeEEeecCCCCceecCcCCCCchhhhHHHHHHHHHHhCCCCccCCCCCeeec
Confidence 3467899999876667778865 4 7999999999964 5789999988763
No 71
>3k1l_B Fancl; UBC, ring, RWD, ligase; HET: MAL CIT; 3.20A {Drosophila melanogaster}
Probab=97.72 E-value=8.9e-06 Score=75.98 Aligned_cols=49 Identities=27% Similarity=0.736 Sum_probs=38.7
Q ss_pred CCCccccccCCCCCC----C--eE--cCCCCccChhHHHHHHhcC-----------CCCCCCCCCCCC
Q 018471 296 PGVSKCTLCLSNRQD----P--TA--TPCGHVFCWNCIMEWCNEK-----------PECPLCRAPITH 344 (355)
Q Consensus 296 ~~~~~C~iC~~~~~~----p--~~--~~CgH~fC~~Ci~~~~~~~-----------~~CP~Cr~~~~~ 344 (355)
.....|+||++.+.+ | ++ .+|||.|+..|+.+|++.. ..||.|++++..
T Consensus 306 e~~~ECaICys~~l~~g~lPdk~C~n~~C~h~FH~~CL~kWLrs~~~sRqSFnvi~G~CPyCr~pIs~ 373 (381)
T 3k1l_B 306 NEELRCNICFAYRLDGGEVPLVSCDNAKCVLKCHAVCLEEWFKTLMDGKTFLEVSFGQCPFCKAKLST 373 (381)
T ss_dssp CSCCSCSSSCCSSCTTCCCCCBCCSCTTCCCCBCSGGGHHHHHHHHSSSCTTTCCEEECTTTCCEEEG
T ss_pred cCCccCcccceeecCCCCCccccccCCccCCccchHHHHHHHHhCCCccccccccCCCCCCCCCcCCc
Confidence 467899999987765 2 12 3799999999999999742 379999998764
No 72
>3nw0_A Non-structural maintenance of chromosomes element homolog; E3 ligase, Zn, metal binding protein; 2.92A {Homo sapiens}
Probab=96.02 E-value=0.0055 Score=54.89 Aligned_cols=48 Identities=25% Similarity=0.636 Sum_probs=38.2
Q ss_pred CccccccCCCCCCCe-EcCCCCccChhHHHHHHhcC--CCCCCCCCCCCCC
Q 018471 298 VSKCTLCLSNRQDPT-ATPCGHVFCWNCIMEWCNEK--PECPLCRAPITHS 345 (355)
Q Consensus 298 ~~~C~iC~~~~~~p~-~~~CgH~fC~~Ci~~~~~~~--~~CP~Cr~~~~~~ 345 (355)
-..|.+|.+...... +..|+|.|+..|+..|.+.. ..||.|+.+.+..
T Consensus 180 i~~C~iC~~iv~~g~~C~~C~~~~H~~C~~~~~~~~~~~~CP~C~~~W~~~ 230 (238)
T 3nw0_A 180 VKICNICHSLLIQGQSCETCGIRMHLPCVAKYFQSNAEPRCPHCNDYWPHE 230 (238)
T ss_dssp CCBCTTTCSBCSSCEECSSSCCEECHHHHHHHTTTCSSCBCTTTCCBCCSC
T ss_pred CCcCcchhhHHhCCcccCccChHHHHHHHHHHHHhCCCCCCCCCCCCCCCC
Confidence 568999999776543 44599999999999998754 5999999876543
No 73
>3m62_A Ubiquitin conjugation factor E4; armadillo-like repeats, UBL conjugation pathway, DNA damage, nucleus, phosphoprotein; HET: 1PE; 2.40A {Saccharomyces cerevisiae} PDB: 3m63_A* 2qiz_A 2qj0_A
Probab=95.60 E-value=0.0073 Score=63.73 Aligned_cols=58 Identities=16% Similarity=0.118 Sum_probs=53.3
Q ss_pred CCCCCccccccCCCCCCCeEcCCC-CccChhHHHHHHhcCCCCCCCCCCCCCCCceecc
Q 018471 294 AAPGVSKCTLCLSNRQDPTATPCG-HVFCWNCIMEWCNEKPECPLCRAPITHSSLVCLY 351 (355)
Q Consensus 294 ~~~~~~~C~iC~~~~~~p~~~~Cg-H~fC~~Ci~~~~~~~~~CP~Cr~~~~~~~~~~l~ 351 (355)
+.++.+.|||-.+.+.+|+.+|.| +.|-..+|..|+..+.+||.-|+++...+++|.+
T Consensus 887 ~iP~~F~cPIs~~lM~DPVilpsG~~TydR~~I~~wl~~~~tdP~Tr~~L~~~~liPN~ 945 (968)
T 3m62_A 887 DVPDEFLDPLMYTIMKDPVILPASKMNIDRSTIKAHLLSDSTDPFNRMPLKLEDVTPNE 945 (968)
T ss_dssp CSCGGGBCTTTCSBCSSEEECTTTCCEEEHHHHHHHHTTCCBCTTTCCBCCGGGCEECH
T ss_pred CCcHHhCCcchhhHHhCCeEcCCCCEEECHHHHHHHHhcCCCCCCCCCCCCcccccccH
Confidence 556889999999999999999998 5899999999999889999999999999999864
No 74
>2jun_A Midline-1; B-BOX, TRIM, ring finger, alternative splicing, coiled coil, cytoplasm, cytoskeleton, disease mutation, ligase, metal-binding; NMR {Homo sapiens}
Probab=93.32 E-value=0.043 Score=41.88 Aligned_cols=31 Identities=23% Similarity=0.619 Sum_probs=25.9
Q ss_pred CCccccccCCC-CCCCeE--cCCCCccChhHHHH
Q 018471 297 GVSKCTLCLSN-RQDPTA--TPCGHVFCWNCIME 327 (355)
Q Consensus 297 ~~~~C~iC~~~-~~~p~~--~~CgH~fC~~Ci~~ 327 (355)
++..|++|.+. ..+++. +.|+|.||..|+..
T Consensus 2 ee~~C~~C~~~~~~~av~~C~~C~~~~C~~Cl~~ 35 (101)
T 2jun_A 2 EKVLCQFCDQDPAQDAVKTCVTCEVSYCDECLKA 35 (101)
T ss_dssp CCCBCTTCCSSSCCBCCEEETTTTEEECHHHHHH
T ss_pred CCCCCcCCCCCCCCCceEECCcCChHHhHHHCHH
Confidence 35789999975 556665 89999999999997
No 75
>2ko5_A Ring finger protein Z; lassa fever virus-Z, negative regulator of EIF4E, cytoplasm, HOST-virus interaction, lipoprotein, membrane; NMR {Lassa virus josiah}
Probab=92.85 E-value=0.19 Score=37.72 Aligned_cols=50 Identities=24% Similarity=0.669 Sum_probs=40.2
Q ss_pred CCCCccccccCCCCCCCeEcCCC-CccChhHHHHHHhcCCCCCCCCCCCCCCC
Q 018471 295 APGVSKCTLCLSNRQDPTATPCG-HVFCWNCIMEWCNEKPECPLCRAPITHSS 346 (355)
Q Consensus 295 ~~~~~~C~iC~~~~~~p~~~~Cg-H~fC~~Ci~~~~~~~~~CP~Cr~~~~~~~ 346 (355)
.-....|..|+-..+ ..+.|. |-.|..|+...+.....||+|+.+++.+-
T Consensus 25 ~~G~~nCKsCWf~~k--~LV~C~dHYLCl~CLtlmL~~SdrCpIC~~pLPtkl 75 (99)
T 2ko5_A 25 HLGPQFCKSCWFENK--GLVECNNHYLCLNCLTLLLSVSNRCPICKMPLPTKL 75 (99)
T ss_dssp CSCCCCCCSSCSCCS--SEEECSSCEEEHHHHHHTCSSSSEETTTTEECCCCS
T ss_pred ccCcccChhhccccC--CeeeecchhhHHHHHHHHHhhccCCcccCCcCCcce
Confidence 346789999987654 455665 78999999999889999999999887653
No 76
>2cs3_A Protein C14ORF4, MY039 protein; ZF-C3HC4 domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: g.44.1.3
Probab=92.46 E-value=0.2 Score=36.27 Aligned_cols=35 Identities=31% Similarity=0.706 Sum_probs=28.9
Q ss_pred CCCccccccCCCCCCCeEcCC----CCccChhHHHHHHh
Q 018471 296 PGVSKCTLCLSNRQDPTATPC----GHVFCWNCIMEWCN 330 (355)
Q Consensus 296 ~~~~~C~iC~~~~~~p~~~~C----gH~fC~~Ci~~~~~ 330 (355)
.....|.+|.+.+.+.....| +|.||..|-...++
T Consensus 13 ~a~l~CtlC~erLEdtHFVQCPsv~~HkFCFpCsr~sIk 51 (93)
T 2cs3_A 13 SGPLCCTICHERLEDTHFVQCPSVPSHKFCFPCSRESIK 51 (93)
T ss_dssp CCSCCCSSSCSCCSSTTSEECSSCSSCEECHHHHHHHHH
T ss_pred CCeeEeecchhhhccCceeeCCCccCCeeeccccHHHHH
Confidence 456899999999988766655 68899999988875
No 77
>2lri_C Autoimmune regulator; Zn binding protein domain, apeced, transcription; NMR {Homo sapiens}
Probab=86.06 E-value=0.79 Score=32.15 Aligned_cols=48 Identities=21% Similarity=0.553 Sum_probs=33.6
Q ss_pred CCCccccccCCCCCCCeEcCCCCccChhHHHHHHhcC----CCCCCCCCCCC
Q 018471 296 PGVSKCTLCLSNRQDPTATPCGHVFCWNCIMEWCNEK----PECPLCRAPIT 343 (355)
Q Consensus 296 ~~~~~C~iC~~~~~~p~~~~CgH~fC~~Ci~~~~~~~----~~CP~Cr~~~~ 343 (355)
.....|.+|.+.-..-..-.|...|+.+|+...+... ..||.|.....
T Consensus 10 ~~~~~C~vC~~~~~ll~Cd~C~~~~H~~Cl~P~l~~~P~g~W~C~~C~~~~~ 61 (66)
T 2lri_C 10 APGARCGVCGDGTDVLRCTHCAAAFHWRCHFPAGTSRPGTGLRCRSCSGDVT 61 (66)
T ss_dssp CTTCCCTTTSCCTTCEECSSSCCEECHHHHCTTTCCCCSSSCCCTTTTTCCC
T ss_pred CCCCCcCCCCCCCeEEECCCCCCceecccCCCccCcCCCCCEECccccCCCc
Confidence 3456799998754333344799999999997766533 48999976443
No 78
>1wd2_A Ariadne-1 protein homolog; ring, IBR, triad, zinc finger, ligase; NMR {Homo sapiens} SCOP: g.44.1.1
Probab=80.93 E-value=0.33 Score=33.45 Aligned_cols=34 Identities=24% Similarity=0.761 Sum_probs=23.2
Q ss_pred CccccccCCCCCCC------eEcC--CCCccChhHHHHHHhc
Q 018471 298 VSKCTLCLSNRQDP------TATP--CGHVFCWNCIMEWCNE 331 (355)
Q Consensus 298 ~~~C~iC~~~~~~p------~~~~--CgH~fC~~Ci~~~~~~ 331 (355)
...||-|...+... +... |++.|||.|..+|...
T Consensus 6 ~k~CP~C~~~Iek~~GCnhmtC~~~~C~~~FCw~C~~~~~~~ 47 (60)
T 1wd2_A 6 TKECPKCHVTIEKDGGCNHMVCRNQNCKAEFCWVCLGPWEPH 47 (60)
T ss_dssp CCCCTTTCCCCSSCCSCCSSSCCSSGGGSCCSSSSCSCSGGG
T ss_pred ceECcCCCCeeEeCCCCCcEEECCCCcCCEEeeCcCCCcccC
Confidence 46788887665421 2223 8999999999888653
No 79
>3i2d_A E3 SUMO-protein ligase SIZ1; signal transduction, replication, ring E3, PIAS, ubiquitin, UBC9, metal-binding, nucleus; 2.60A {Saccharomyces cerevisiae}
Probab=79.06 E-value=1.3 Score=41.86 Aligned_cols=51 Identities=20% Similarity=0.584 Sum_probs=38.7
Q ss_pred CCccccccCCCCCCCeEc-CCCCccChhHHHHHHh-----cCCCCCCCCCCCCCCCce
Q 018471 297 GVSKCTLCLSNRQDPTAT-PCGHVFCWNCIMEWCN-----EKPECPLCRAPITHSSLV 348 (355)
Q Consensus 297 ~~~~C~iC~~~~~~p~~~-~CgH~fC~~Ci~~~~~-----~~~~CP~Cr~~~~~~~~~ 348 (355)
-...||+-...+..|+.- .|.|.-|.+-. .|+. ....||.|.+.+...+|+
T Consensus 248 vSL~CPlS~~ri~~PvRg~~C~HlQCFDl~-sfL~~~~~~~~W~CPIC~k~~~~~dL~ 304 (371)
T 3i2d_A 248 MSLQCPISYTRMKYPSKSINCKHLQCFDAL-WFLHSQLQIPTWQCPVCQIDIALENLA 304 (371)
T ss_dssp EESBCTTTSSBCSSEEEETTCCSSCCEEHH-HHHHHHHHSCCCBCTTTCCBCCGGGEE
T ss_pred EeecCCCccccccccCcCCcCCCcceECHH-HHHHHhhcCCceeCCCCCcccCHHHee
Confidence 357999999999988765 79999887753 2322 346999999998877664
No 80
>4fo9_A E3 SUMO-protein ligase PIAS2; E3 ligase, pinit domain, SP-ring domain, structural GE consortium, SGC; 2.39A {Homo sapiens} PDB: 2asq_B
Probab=74.49 E-value=2.1 Score=40.28 Aligned_cols=51 Identities=22% Similarity=0.439 Sum_probs=38.6
Q ss_pred CCccccccCCCCCCCeEc-CCCCccChhHHHHHHh-----cCCCCCCCCCCCCCCCce
Q 018471 297 GVSKCTLCLSNRQDPTAT-PCGHVFCWNCIMEWCN-----EKPECPLCRAPITHSSLV 348 (355)
Q Consensus 297 ~~~~C~iC~~~~~~p~~~-~CgH~fC~~Ci~~~~~-----~~~~CP~Cr~~~~~~~~~ 348 (355)
-...||+-...+..|+.. .|.|.-|.+-. .|+. ....||.|.+.+...+|+
T Consensus 214 vSL~CPlS~~ri~~P~Rg~~C~HlqCFDl~-sfL~~~~~~~~W~CPiC~k~~~~~dL~ 270 (360)
T 4fo9_A 214 VSLMCPLGKMRLTIPCRAVTCTHLQCFDAA-LYLQMNEKKPTWICPVCDKKAAYESLI 270 (360)
T ss_dssp EESBCTTTCSBCSSEEEETTCCCCCCEEHH-HHHHHHHHSCCCBCTTTCSBCCGGGEE
T ss_pred EeeeCCCccceeccCCcCCCCCCCccCCHH-HHHHHHhhCCCeECCCCCcccCHHHeE
Confidence 367999999999988764 79999887653 2332 346999999998877664
No 81
>1wil_A KIAA1045 protein; ring finger domain, structural genomics, riken structural genomics/proteomics initiative, RSGI, unknown function; NMR {Homo sapiens} SCOP: g.50.1.3
Probab=72.81 E-value=5.5 Score=29.15 Aligned_cols=33 Identities=18% Similarity=0.388 Sum_probs=23.7
Q ss_pred CCCCccccccCCCCCCCe---EcCCCCccChhHHHHH
Q 018471 295 APGVSKCTLCLSNRQDPT---ATPCGHVFCWNCIMEW 328 (355)
Q Consensus 295 ~~~~~~C~iC~~~~~~p~---~~~CgH~fC~~Ci~~~ 328 (355)
...+..|.||...- ... +--|+-+|+..|+.+.
T Consensus 12 ~~~D~~C~VC~~~t-~~~l~pCRvC~RvfH~~CL~r~ 47 (89)
T 1wil_A 12 VVNDEMCDVCEVWT-AESLFPCRVCTRVFHDGCLRRM 47 (89)
T ss_dssp CCCSCCCTTTCCCC-SSCCSSCSSSSSCCCHHHHHHH
T ss_pred CCCCcccCcccccc-ccceeccccccccccHhhcccc
Confidence 34678999997432 222 3348899999999986
No 82
>2fiy_A Protein FDHE homolog; FDHE protein, structural genomics, P protein structure initiative, midwest center for structural genomics, MCSG; 2.10A {Pseudomonas aeruginosa} SCOP: e.59.1.1
Probab=71.63 E-value=0.37 Score=44.61 Aligned_cols=46 Identities=22% Similarity=0.471 Sum_probs=35.7
Q ss_pred CCCccccccCCCCCCCeEc----CCC--CccChhHHHHHHhcCCCCCCCCCC
Q 018471 296 PGVSKCTLCLSNRQDPTAT----PCG--HVFCWNCIMEWCNEKPECPLCRAP 341 (355)
Q Consensus 296 ~~~~~C~iC~~~~~~p~~~----~Cg--H~fC~~Ci~~~~~~~~~CP~Cr~~ 341 (355)
+....||+|.......+.. .-| +.+|..|-..|-.....||.|...
T Consensus 180 ~~~~~CPvCGs~P~~s~l~~~g~~~G~R~l~Cs~C~t~W~~~R~~C~~Cg~~ 231 (309)
T 2fiy_A 180 ESRTLCPACGSPPMAGMIRQGGKETGLRYLSCSLCACEWHYVRIKCSHCEES 231 (309)
T ss_dssp TTCSSCTTTCCCEEEEEEEC----CCEEEEEETTTCCEEECCTTSCSSSCCC
T ss_pred ccCCCCCCCCCcCceeEEeecCCCCCcEEEEeCCCCCEEeecCcCCcCCCCC
Confidence 4578999999976644433 244 578999999998888899999876
No 83
>1z2q_A LM5-1; membrane protein, FYVE domain, zinc-finger; NMR {Leishmania major}
Probab=70.82 E-value=4 Score=29.82 Aligned_cols=31 Identities=23% Similarity=0.506 Sum_probs=23.8
Q ss_pred CCccccccCCCCCC----CeEcCCCCccChhHHHH
Q 018471 297 GVSKCTLCLSNRQD----PTATPCGHVFCWNCIME 327 (355)
Q Consensus 297 ~~~~C~iC~~~~~~----p~~~~CgH~fC~~Ci~~ 327 (355)
+...|.+|...+.- ...-.||++||..|...
T Consensus 20 ~~~~C~~C~~~Fs~~~RrHHCR~CG~v~C~~Cs~~ 54 (84)
T 1z2q_A 20 DAPACNGCGCVFTTTVRRHHCRNCGYVLCGDCSRH 54 (84)
T ss_dssp TCCBCTTTCCBCCTTSCCEECTTTCCEECTGGGCC
T ss_pred CCCCCcCcCCccccchhcccccCCCcEEChHHhCC
Confidence 45689999987753 24568999999999653
No 84
>1z60_A TFIIH basal transcription factor complex P44 subunit; basic transcription factor, zinc binding protein, ring finger; NMR {Homo sapiens} SCOP: g.49.1.2
Probab=70.27 E-value=2.3 Score=29.06 Aligned_cols=40 Identities=28% Similarity=0.634 Sum_probs=28.5
Q ss_pred ccccccCCCCCCCe---EcCCCCccChhHHHHHHhcCCCCCCC
Q 018471 299 SKCTLCLSNRQDPT---ATPCGHVFCWNCIMEWCNEKPECPLC 338 (355)
Q Consensus 299 ~~C~iC~~~~~~p~---~~~CgH~fC~~Ci~~~~~~~~~CP~C 338 (355)
..|-.|...+.+.. ...|++.||.+|=.=....-..||-|
T Consensus 16 ~~C~~C~~~~~~~~~y~C~~C~~~FC~dCD~fiHe~Lh~CPgC 58 (59)
T 1z60_A 16 RFCYGCQGELKDQHVYVCAVCQNVFCVDCDVFVHDSLHSCPGC 58 (59)
T ss_dssp CEETTTTEECTTSEEECCTTTTCCBCHHHHHTTTTTSCSSSTT
T ss_pred CcccccCcccCCCccEECCccCcCcccchhHHHHhhccCCcCC
Confidence 46888988876544 56799999999943222333689987
No 85
>2d8v_A Zinc finger FYVE domain-containing protein 19; zfyve19, ZF- B_BOX, structural genomics, NPPSFA; NMR {Mus musculus} SCOP: g.43.1.1
Probab=68.19 E-value=3.3 Score=28.78 Aligned_cols=33 Identities=24% Similarity=0.702 Sum_probs=26.2
Q ss_pred CCCccccccCCCCCCCeEcCC-CCccChhHHHHHH
Q 018471 296 PGVSKCTLCLSNRQDPTATPC-GHVFCWNCIMEWC 329 (355)
Q Consensus 296 ~~~~~C~iC~~~~~~p~~~~C-gH~fC~~Ci~~~~ 329 (355)
++..-|.||.+..+ -.+..| |-+||..|..+..
T Consensus 6 ee~pWC~ICneDAt-lrC~gCdgDLYC~rC~rE~H 39 (67)
T 2d8v_A 6 SGLPWCCICNEDAT-LRCAGCDGDLYCARCFREGH 39 (67)
T ss_dssp CCCSSCTTTCSCCC-EEETTTTSEEECSSHHHHHT
T ss_pred cCCCeeEEeCCCCe-EEecCCCCceehHHHHHHHc
Confidence 45678999999843 567789 7899999998764
No 86
>1m3v_A FLIN4, fusion of the LIM interacting domain of LDB1 and the N-terminal LIM domain of LMO4...; fusion protein, LMO proteins, metal binding protein; NMR {Mus musculus} SCOP: g.39.1.3 g.39.1.3
Probab=67.53 E-value=3.1 Score=32.48 Aligned_cols=51 Identities=14% Similarity=0.191 Sum_probs=39.3
Q ss_pred CCccccccCCCCC---CCeEcCCCCccChhHHHHHHhcCCCCCCCCCCCCCCCc
Q 018471 297 GVSKCTLCLSNRQ---DPTATPCGHVFCWNCIMEWCNEKPECPLCRAPITHSSL 347 (355)
Q Consensus 297 ~~~~C~iC~~~~~---~p~~~~CgH~fC~~Ci~~~~~~~~~CP~Cr~~~~~~~~ 347 (355)
+-+.|..|...+. ......=|.+||..|.......+..|..|.+++....+
T Consensus 31 ~CF~C~~C~~~L~~~~~~~~~~~g~~yC~~cy~~~f~~~~~C~~C~~~I~~~~~ 84 (122)
T 1m3v_A 31 RCLKCSSCQAQLGDIGTSSYTKSGMILCRNDYIRLFGNSGAGGSGGHMGSGGDV 84 (122)
T ss_dssp HHHCCSSSCCCTTTSEECCEEETTEEECHHHHHHHHCCCCSSSCSSCCSCCEES
T ss_pred hCCCcCCCCCcccccCCeEEEECCeeecHHHHHHHcCCCCccccCCCCcCchhe
Confidence 4578999998886 24556678899999998776555589999998886554
No 87
>1x4u_A Zinc finger, FYVE domain containing 27 isoform B; phosphoinositide binding, zinc binding, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=65.94 E-value=3.3 Score=30.25 Aligned_cols=30 Identities=27% Similarity=0.677 Sum_probs=23.0
Q ss_pred CCccccccCCCCCC----CeEcCCCCccChhHHH
Q 018471 297 GVSKCTLCLSNRQD----PTATPCGHVFCWNCIM 326 (355)
Q Consensus 297 ~~~~C~iC~~~~~~----p~~~~CgH~fC~~Ci~ 326 (355)
+...|..|...+.- -..-.||.+||..|..
T Consensus 13 ~~~~C~~C~~~F~~~~RrHHCR~CG~vfC~~Cs~ 46 (84)
T 1x4u_A 13 NFGNCTGCSATFSVLKKRRSCSNCGNSFCSRCCS 46 (84)
T ss_dssp CCSSCSSSCCCCCSSSCCEECSSSCCEECTTTSC
T ss_pred CCCcCcCcCCccccchhhhhhcCCCcEEChhhcC
Confidence 45689999988752 2456899999999954
No 88
>1joc_A EEA1, early endosomal autoantigen 1; FYVE domain, inositol 3-phosphate binding, membrane protein; HET: ITP; 2.20A {Homo sapiens} SCOP: g.50.1.1 h.1.21.1 PDB: 1hyi_A* 1hyj_A
Probab=65.41 E-value=2.3 Score=33.69 Aligned_cols=29 Identities=28% Similarity=0.709 Sum_probs=22.7
Q ss_pred CccccccCCCCCC----CeEcCCCCccChhHHH
Q 018471 298 VSKCTLCLSNRQD----PTATPCGHVFCWNCIM 326 (355)
Q Consensus 298 ~~~C~iC~~~~~~----p~~~~CgH~fC~~Ci~ 326 (355)
...|.+|...+.- ..+-.||++||..|..
T Consensus 69 ~~~C~~C~~~Fs~~~RrHHCR~CG~vfC~~Cs~ 101 (125)
T 1joc_A 69 VQNCMACGKGFSVTVRRHHCRQCGNIFCAECSA 101 (125)
T ss_dssp CCBCTTTCCBCCSSSCCEECTTTCCEECGGGSC
T ss_pred CCCCcCcCCccccccccccCCCCCeEEChHHhC
Confidence 4689999987753 2456899999999964
No 89
>1mm2_A MI2-beta; PHD, zinc finger, protein scaffold, DNA binding protein; NMR {Homo sapiens} SCOP: g.50.1.2 PDB: 2l75_A* 1mm3_A
Probab=64.62 E-value=2.6 Score=28.83 Aligned_cols=47 Identities=17% Similarity=0.413 Sum_probs=30.8
Q ss_pred CCCccccccCCCCCCCeEcCCCCccChhHHHHHHh----cCCCCCCCCCCC
Q 018471 296 PGVSKCTLCLSNRQDPTATPCGHVFCWNCIMEWCN----EKPECPLCRAPI 342 (355)
Q Consensus 296 ~~~~~C~iC~~~~~~p~~~~CgH~fC~~Ci~~~~~----~~~~CP~Cr~~~ 342 (355)
..+..|.+|.+.-.--..-.|...|+..|+..-+. ....||.|....
T Consensus 7 ~~~~~C~vC~~~g~ll~Cd~C~~~fH~~Cl~ppl~~~p~g~W~C~~C~~~~ 57 (61)
T 1mm2_A 7 HHMEFCRVCKDGGELLCCDTCPSSYHIHCLNPPLPEIPNGEWLCPRCTCPA 57 (61)
T ss_dssp SSCSSCTTTCCCSSCBCCSSSCCCBCSSSSSSCCSSCCSSCCCCTTTTTTC
T ss_pred CCCCcCCCCCCCCCEEEcCCCCHHHcccccCCCcCcCCCCccCChhhcCch
Confidence 34667999986432223346888899999875433 234799997644
No 90
>2yw8_A RUN and FYVE domain-containing protein 1; structure genomics, structural genomics, NPPSFA; 3.00A {Homo sapiens} PDB: 2yqm_A
Probab=64.16 E-value=3.1 Score=30.29 Aligned_cols=30 Identities=27% Similarity=0.699 Sum_probs=23.1
Q ss_pred CCccccccCCCCCC----CeEcCCCCccChhHHH
Q 018471 297 GVSKCTLCLSNRQD----PTATPCGHVFCWNCIM 326 (355)
Q Consensus 297 ~~~~C~iC~~~~~~----p~~~~CgH~fC~~Ci~ 326 (355)
+...|.+|...+.- -..-.||.+||..|..
T Consensus 18 ~~~~C~~C~~~Fs~~~RrHHCR~CG~v~C~~Cs~ 51 (82)
T 2yw8_A 18 EATHCRQCEKEFSISRRKHHCRNCGHIFCNTCSS 51 (82)
T ss_dssp CCCBCTTTCCBCBTTBCCEECTTTCCEECSGGGC
T ss_pred cCCcccCcCCcccCccccccCCCCCCEEChHHhC
Confidence 35689999987753 2456899999999975
No 91
>1y02_A CARP2, FYVE-ring finger protein sakura; zinc-binding module, phosphoinositide binding, caspase regulation, metal binding protein; 1.80A {Homo sapiens} SCOP: a.140.2.1 g.50.1.1
Probab=61.88 E-value=3.4 Score=32.50 Aligned_cols=42 Identities=26% Similarity=0.543 Sum_probs=26.1
Q ss_pred CCccccccCCCCCC----CeEcCCCCccChhHHHHHHhcCCCCCCC
Q 018471 297 GVSKCTLCLSNRQD----PTATPCGHVFCWNCIMEWCNEKPECPLC 338 (355)
Q Consensus 297 ~~~~C~iC~~~~~~----p~~~~CgH~fC~~Ci~~~~~~~~~CP~C 338 (355)
....|..|...+.. ..+-.||.+||..|..........|-.|
T Consensus 18 ~~~~C~~C~~~Fs~~~RkHHCR~CG~ifC~~Cs~~~~~~vRVC~~C 63 (120)
T 1y02_A 18 LEPSCKSCGAHFANTARKQTCLDCKKNFCMTCSSQVGNGPRLCLLC 63 (120)
T ss_dssp --CCCTTTCCCCSSGGGCEECTTTCCEECGGGEEC----CCEEHHH
T ss_pred ccCcccCcCCccccccccccCCCCCCeeCHHHhCCCCCCceECHHH
Confidence 34689999988753 3456899999999965433233345444
No 92
>1dvp_A HRS, hepatocyte growth factor-regulated tyrosine kinase substrate; VHS, FYVE, zinc finger, superhelix, transferase; HET: CIT; 2.00A {Drosophila melanogaster} SCOP: a.118.9.2 g.50.1.1
Probab=60.34 E-value=3 Score=36.30 Aligned_cols=29 Identities=28% Similarity=0.591 Sum_probs=22.7
Q ss_pred CccccccCCCCCC----CeEcCCCCccChhHHH
Q 018471 298 VSKCTLCLSNRQD----PTATPCGHVFCWNCIM 326 (355)
Q Consensus 298 ~~~C~iC~~~~~~----p~~~~CgH~fC~~Ci~ 326 (355)
...|..|...+.- ..+-.||++||..|..
T Consensus 161 ~~~C~~C~~~F~~~~rrhhCr~CG~v~C~~Cs~ 193 (220)
T 1dvp_A 161 GRVCHRCRVEFTFTNRKHHCRNCGQVFCGQCTA 193 (220)
T ss_dssp CSBCTTTCCBCCSSSCCEECTTTCCEECSTTSC
T ss_pred CCccCCCCCccCCcccccccCCcCCEEChHHhC
Confidence 4689999887652 3566899999999964
No 93
>3t7l_A Zinc finger FYVE domain-containing protein 16; structural genomics consortium, SGC, lipid BIND protein, transport protein; 1.09A {Homo sapiens}
Probab=59.93 E-value=3.5 Score=30.61 Aligned_cols=30 Identities=27% Similarity=0.594 Sum_probs=23.0
Q ss_pred CccccccCCCCCC----CeEcCCCCccChhHHHH
Q 018471 298 VSKCTLCLSNRQD----PTATPCGHVFCWNCIME 327 (355)
Q Consensus 298 ~~~C~iC~~~~~~----p~~~~CgH~fC~~Ci~~ 327 (355)
...|.+|...+.- ...-.||++||..|...
T Consensus 20 ~~~C~~C~~~F~~~~RrhhCr~CG~v~C~~Cs~~ 53 (90)
T 3t7l_A 20 APNCMNCQVKFTFTKRRHHCRACGKVFCGVCCNR 53 (90)
T ss_dssp CCBCTTTCCBCCSSSCCEECTTTCCEECGGGSCE
T ss_pred CCcCcCCCCcccchhhCccccCCCCEECCcccCC
Confidence 4679999887652 34568999999999754
No 94
>1vfy_A Phosphatidylinositol-3-phosphate binding FYVE domain of protein VPS27; endosome maturation, intracellular trafficking; 1.15A {Saccharomyces cerevisiae} SCOP: g.50.1.1
Probab=59.43 E-value=4 Score=28.91 Aligned_cols=28 Identities=25% Similarity=0.580 Sum_probs=21.7
Q ss_pred ccccccCCCCCC----CeEcCCCCccChhHHH
Q 018471 299 SKCTLCLSNRQD----PTATPCGHVFCWNCIM 326 (355)
Q Consensus 299 ~~C~iC~~~~~~----p~~~~CgH~fC~~Ci~ 326 (355)
..|.+|...+.- -..-.||.+||..|..
T Consensus 12 ~~C~~C~~~F~~~~RrHHCR~CG~v~C~~Cs~ 43 (73)
T 1vfy_A 12 DACMICSKKFSLLNRKHHCRSCGGVFCQEHSS 43 (73)
T ss_dssp SBCTTTCCBCBTTBCCEECTTTCCEECGGGSC
T ss_pred CcccCCCCccCCccccccCCCCCEEEcccccC
Confidence 479999987653 3456899999999964
No 95
>3zyq_A Hepatocyte growth factor-regulated tyrosine kinas substrate; signaling; 1.48A {Homo sapiens} PDB: 4avx_A*
Probab=59.02 E-value=4.6 Score=35.32 Aligned_cols=30 Identities=23% Similarity=0.691 Sum_probs=23.1
Q ss_pred CccccccCCCCC----CCeEcCCCCccChhHHHH
Q 018471 298 VSKCTLCLSNRQ----DPTATPCGHVFCWNCIME 327 (355)
Q Consensus 298 ~~~C~iC~~~~~----~p~~~~CgH~fC~~Ci~~ 327 (355)
...|..|...+. ...+-.||++||..|-..
T Consensus 164 ~~~C~~C~~~F~~~~RrhHCR~CG~v~C~~Cs~~ 197 (226)
T 3zyq_A 164 AEECHRCRVQFGVMTRKHHCRACGQIFCGKCSSK 197 (226)
T ss_dssp CSBCTTTCCBCBTTBCCEECTTTCCEECTTTCCE
T ss_pred CCCCcCcCCCCCccccccccCCCcCEeChhhcCC
Confidence 358999988765 235678999999999653
No 96
>3mpx_A FYVE, rhogef and PH domain-containing protein 5; structural genomics consortium, DH domain, SGC, L binding protein; 2.80A {Homo sapiens}
Probab=58.30 E-value=2.1 Score=41.07 Aligned_cols=46 Identities=22% Similarity=0.468 Sum_probs=0.0
Q ss_pred CCccccccCCCCC----CCeEcCCCCccChhHHHHHHh-------cCCCCCCCCCCC
Q 018471 297 GVSKCTLCLSNRQ----DPTATPCGHVFCWNCIMEWCN-------EKPECPLCRAPI 342 (355)
Q Consensus 297 ~~~~C~iC~~~~~----~p~~~~CgH~fC~~Ci~~~~~-------~~~~CP~Cr~~~ 342 (355)
+...|..|...+. ...+-.||++||..|...... ....|-.|-..+
T Consensus 374 ~~~~c~~c~~~f~~~~r~h~Cr~Cg~~~C~~Cs~~~~~~~~~~~~~~rvC~~C~~~l 430 (434)
T 3mpx_A 374 HVMMCMNCGCDFSLTLRRHHCHACGKIVCRNCSRNKYPLKYLKDRMAKVCDGCFGEL 430 (434)
T ss_dssp ---------------------------------------------------------
T ss_pred cCCcCCCcCCCCCCcchhhhcccCcCEeehhhCCCeeeCCCCCCCcCEecHHHHHHH
Confidence 3568999988764 235678999999999865431 124677775544
No 97
>2l5u_A Chromodomain-helicase-DNA-binding protein 4; CHD4, MI2B, MI2-beta, PHD, protein binding, peptide binding metal binding protein; NMR {Homo sapiens}
Probab=57.81 E-value=3.7 Score=28.05 Aligned_cols=45 Identities=18% Similarity=0.410 Sum_probs=30.2
Q ss_pred CCCccccccCCCCCCCeEcCCCCccChhHHHHHHh----cCCCCCCCCC
Q 018471 296 PGVSKCTLCLSNRQDPTATPCGHVFCWNCIMEWCN----EKPECPLCRA 340 (355)
Q Consensus 296 ~~~~~C~iC~~~~~~p~~~~CgH~fC~~Ci~~~~~----~~~~CP~Cr~ 340 (355)
..+..|.+|...-.--..-.|...|+..|+..-+. ....||.|..
T Consensus 9 ~~~~~C~vC~~~g~ll~CD~C~~~fH~~Cl~p~l~~~p~g~W~C~~C~~ 57 (61)
T 2l5u_A 9 DHQDYCEVCQQGGEIILCDTCPRAYHMVCLDPDMEKAPEGKWSCPHCEK 57 (61)
T ss_dssp CCCSSCTTTSCCSSEEECSSSSCEEEHHHHCTTCCSCCCSSCCCTTGGG
T ss_pred CCCCCCccCCCCCcEEECCCCChhhhhhccCCCCCCCCCCceECccccc
Confidence 45678999987422122336888899999986433 2348999964
No 98
>2gmg_A Hypothetical protein PF0610; winged-helix like protein with metal binding site, structura genomics, PSI, protein structure initiative; NMR {Pyrococcus furiosus} SCOP: a.4.5.82
Probab=57.66 E-value=2.2 Score=32.71 Aligned_cols=30 Identities=27% Similarity=0.535 Sum_probs=19.0
Q ss_pred CCCeEcCCCCccChhHHHHHHhcCCCCCCCCCCCC
Q 018471 309 QDPTATPCGHVFCWNCIMEWCNEKPECPLCRAPIT 343 (355)
Q Consensus 309 ~~p~~~~CgH~fC~~Ci~~~~~~~~~CP~Cr~~~~ 343 (355)
..+.+..||+.|+. -......||.|+..--
T Consensus 66 ~p~~C~~CG~~F~~-----~~~kPsrCP~CkSe~I 95 (105)
T 2gmg_A 66 KPAQCRKCGFVFKA-----EINIPSRCPKCKSEWI 95 (105)
T ss_dssp CCCBBTTTCCBCCC-----CSSCCSSCSSSCCCCB
T ss_pred ECcChhhCcCeecc-----cCCCCCCCcCCCCCcc
Confidence 35566789999821 1223468999977543
No 99
>1wfk_A Zinc finger, FYVE domain containing 19; riken structural genomics/proteomics initiative, RSGI, structural genomics, unknown function; NMR {Mus musculus} SCOP: g.50.1.1
Probab=57.41 E-value=5.6 Score=29.37 Aligned_cols=31 Identities=26% Similarity=0.498 Sum_probs=23.3
Q ss_pred CCccccccCCCCCC----CeEcCCCCccChhHHHH
Q 018471 297 GVSKCTLCLSNRQD----PTATPCGHVFCWNCIME 327 (355)
Q Consensus 297 ~~~~C~iC~~~~~~----p~~~~CgH~fC~~Ci~~ 327 (355)
+...|.+|...+.- ...-.||.+||..|...
T Consensus 8 ~~~~C~~C~~~F~~~~RrHHCR~CG~vfC~~Cs~~ 42 (88)
T 1wfk_A 8 MESRCYGCAVKFTLFKKEYGCKNCGRAFCNGCLSF 42 (88)
T ss_dssp CCSBCTTTCCBCCSSSCEEECSSSCCEEETTTSCE
T ss_pred cCCCCcCcCCcccCccccccCCCCCCEEChhHcCC
Confidence 45689999987753 24568999999999643
No 100
>1x64_A Alpha-actinin-2 associated LIM protein; LIM domain, PDZ and LIM domain 3, structural genomics, NPPSFA; NMR {Mus musculus} SCOP: g.39.1.3 g.39.1.3
Probab=55.33 E-value=22 Score=25.57 Aligned_cols=41 Identities=15% Similarity=0.256 Sum_probs=28.2
Q ss_pred CCccccccCCCCCCCeEcCCCCccChhHHHHHHhcCCCCCCCCCCCCCC
Q 018471 297 GVSKCTLCLSNRQDPTATPCGHVFCWNCIMEWCNEKPECPLCRAPITHS 345 (355)
Q Consensus 297 ~~~~C~iC~~~~~~p~~~~CgH~fC~~Ci~~~~~~~~~CP~Cr~~~~~~ 345 (355)
....|..|.+.+.......-+..|+..| +.|-.|+..+...
T Consensus 24 ~~~~C~~C~~~I~~~~~~a~~~~~H~~C--------F~C~~C~~~L~~~ 64 (89)
T 1x64_A 24 RMPLCDKCGSGIVGAVVKARDKYRHPEC--------FVCADCNLNLKQK 64 (89)
T ss_dssp SCCBCTTTCCBCCSCCEESSSCEECTTT--------CCCSSSCCCTTTS
T ss_pred cCCCcccCCCEecccEEEECCceECccC--------CEecCCCCCCCCC
Confidence 4567888887776655556666677766 6677887777654
No 101
>3u5n_A E3 ubiquitin-protein ligase TRIM33; TRIM33, PHD, bromodomain, TGF-beta, epigenetics, methylation, K9ME3, K14AC, transcription; HET: M3L ALY; 1.95A {Homo sapiens} PDB: 3u5m_A* 3u5o_A* 3u5p_A*
Probab=54.20 E-value=2.5 Score=36.44 Aligned_cols=46 Identities=20% Similarity=0.362 Sum_probs=30.7
Q ss_pred CCccccccCCCCCCCeEcCCCCccChhHHHHHHh----cCCCCCCCCCCC
Q 018471 297 GVSKCTLCLSNRQDPTATPCGHVFCWNCIMEWCN----EKPECPLCRAPI 342 (355)
Q Consensus 297 ~~~~C~iC~~~~~~p~~~~CgH~fC~~Ci~~~~~----~~~~CP~Cr~~~ 342 (355)
.+..|.+|...-.--.+-.|...|+..|+.+-+. ....||.|+..-
T Consensus 6 ~~~~C~~C~~~g~ll~Cd~C~~~~H~~Cl~p~l~~~p~~~W~C~~C~~~~ 55 (207)
T 3u5n_A 6 NEDWCAVCQNGGDLLCCEKCPKVFHLTCHVPTLLSFPSGDWICTFCRDIG 55 (207)
T ss_dssp SCSSBTTTCCCEEEEECSSSSCEECTTTSSSCCSSCCSSCCCCTTTSCSS
T ss_pred CCCCCCCCCCCCceEEcCCCCCccCCccCCCCCCCCCCCCEEeCceeCcc
Confidence 4567999986422223346888999999865443 235899997643
No 102
>1x62_A C-terminal LIM domain protein 1; PDZ and LIM domain protein 1, LIM domain protein CLP-36, contractIle protein, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: g.39.1.3 g.39.1.3
Probab=52.92 E-value=17 Score=25.58 Aligned_cols=38 Identities=13% Similarity=0.216 Sum_probs=23.7
Q ss_pred CccccccCCCCCCCeEcCCCCccChhHHHHHHhcCCCCCCCCCCCC
Q 018471 298 VSKCTLCLSNRQDPTATPCGHVFCWNCIMEWCNEKPECPLCRAPIT 343 (355)
Q Consensus 298 ~~~C~iC~~~~~~p~~~~CgH~fC~~Ci~~~~~~~~~CP~Cr~~~~ 343 (355)
...|..|.+.+.......-+..|+..| +.|-.|+..+.
T Consensus 15 ~~~C~~C~~~I~~~~~~a~~~~~H~~C--------F~C~~C~~~L~ 52 (79)
T 1x62_A 15 LPMCDKCGTGIVGVFVKLRDRHRHPEC--------YVCTDCGTNLK 52 (79)
T ss_dssp CCCCSSSCCCCCSSCEECSSCEECTTT--------TSCSSSCCCHH
T ss_pred CCccccCCCCccCcEEEECcceeCcCc--------CeeCCCCCCCC
Confidence 457777777666555555566666665 55666766554
No 103
>4g9i_A Hydrogenase maturation protein HYPF; zinc finger, ATP binding, carbamoyla transferase; 4.50A {Thermococcus kodakarensis}
Probab=51.72 E-value=5 Score=41.77 Aligned_cols=49 Identities=33% Similarity=0.767 Sum_probs=37.1
Q ss_pred CCCCCccccccCCCCCCC----------eEcCCCCcc--------------------ChhHHHHHHhc--------CCCC
Q 018471 294 AAPGVSKCTLCLSNRQDP----------TATPCGHVF--------------------CWNCIMEWCNE--------KPEC 335 (355)
Q Consensus 294 ~~~~~~~C~iC~~~~~~p----------~~~~CgH~f--------------------C~~Ci~~~~~~--------~~~C 335 (355)
..++--.|+-|+.++.+| .+|.||..| |..|-.++-.. -..|
T Consensus 102 i~pD~a~C~~Cl~e~~dp~~rry~ypF~nCt~CGPR~tii~~lPYDR~~TsM~~F~mC~~C~~EY~dp~dRRfhAqp~aC 181 (772)
T 4g9i_A 102 IPPDIAICDDCLRELFDPTNKRYMYPFIVCTNCGPRFTIIEDLPYDRENTTMKEFPMCDFCRSEYEDPLNRRYHAEPTAC 181 (772)
T ss_dssp CCCCCCCCHHHHHHHSSTTSTTTTCTTCCCTTSSCCGGGCCSSSCCGGGSGGGGSCCCHHHHHHHHCSSSTTTTCTTCCC
T ss_pred cCCchhhhHHHHHHhcCCCCCccCCccccCCCCCchhhhhhcCCCCCCCCcCCCCCCChhHHHHhCCCCCCCCcCCCCCC
Confidence 456778999999887665 367788776 99999998642 2389
Q ss_pred CCCCCCC
Q 018471 336 PLCRAPI 342 (355)
Q Consensus 336 P~Cr~~~ 342 (355)
|.|.-.+
T Consensus 182 ~~CGP~l 188 (772)
T 4g9i_A 182 PVCGPSY 188 (772)
T ss_dssp TTTSCCE
T ss_pred ccCCceE
Confidence 9997654
No 104
>1fp0_A KAP-1 corepressor; PHD domain, C3HC4 type zinc binding domain, -structure, transcription; NMR {Homo sapiens} SCOP: g.50.1.2
Probab=51.46 E-value=8.5 Score=28.46 Aligned_cols=46 Identities=17% Similarity=0.476 Sum_probs=31.4
Q ss_pred CCCccccccCCCCCCCeEcCCCCccChhHHHHHHhc----CCCCCCCCCC
Q 018471 296 PGVSKCTLCLSNRQDPTATPCGHVFCWNCIMEWCNE----KPECPLCRAP 341 (355)
Q Consensus 296 ~~~~~C~iC~~~~~~p~~~~CgH~fC~~Ci~~~~~~----~~~CP~Cr~~ 341 (355)
..+..|.+|...-.--.+-.|.-.|+..|+.+-+.. ...||.|...
T Consensus 23 ~n~~~C~vC~~~g~LL~CD~C~~~fH~~Cl~PpL~~~P~g~W~C~~C~~~ 72 (88)
T 1fp0_A 23 DSATICRVCQKPGDLVMCNQCEFCFHLDCHLPALQDVPGEEWSCSLCHVL 72 (88)
T ss_dssp SSSSCCSSSCSSSCCEECTTSSCEECTTSSSTTCCCCCSSSCCCCSCCCC
T ss_pred CCCCcCcCcCCCCCEEECCCCCCceecccCCCCCCCCcCCCcCCccccCC
Confidence 456789999875332233478888999999765543 3479999653
No 105
>3o36_A Transcription intermediary factor 1-alpha; TRIM24, PHD finger, bromodomain, H4K16 acetylation, breast C transcription-protein binding complex; HET: ALY; 1.70A {Homo sapiens} PDB: 3o33_A* 3o34_A* 3o35_A* 3o37_A
Probab=51.06 E-value=5 Score=33.79 Aligned_cols=45 Identities=20% Similarity=0.441 Sum_probs=30.7
Q ss_pred CccccccCCCCCCCeEcCCCCccChhHHHHHHhc----CCCCCCCCCCC
Q 018471 298 VSKCTLCLSNRQDPTATPCGHVFCWNCIMEWCNE----KPECPLCRAPI 342 (355)
Q Consensus 298 ~~~C~iC~~~~~~p~~~~CgH~fC~~Ci~~~~~~----~~~CP~Cr~~~ 342 (355)
+..|.+|...-.--.+-.|...|+..|+.+-+.. ...||.|+..-
T Consensus 4 ~~~C~~C~~~g~ll~Cd~C~~~~H~~C~~p~l~~~p~~~W~C~~C~~~~ 52 (184)
T 3o36_A 4 EDWCAVCQNGGELLCCEKCPKVFHLSCHVPTLTNFPSGEWICTFCRDLS 52 (184)
T ss_dssp CSSCTTTCCCSSCEECSSSSCEECTTTSSSCCSSCCSSCCCCTTTSCSS
T ss_pred CCccccCCCCCeeeecCCCCcccCccccCCCCCCCCCCCEECccccCcc
Confidence 4569999865333344578888999998654432 35799997644
No 106
>2cor_A Pinch protein; LIM domain, particularly interesting NEW Cys- His protein, LIM and senescent cell antigen-like domains 1, structural genomics; NMR {Homo sapiens} SCOP: g.39.1.3 g.39.1.3
Probab=50.95 E-value=19 Score=25.44 Aligned_cols=38 Identities=13% Similarity=0.218 Sum_probs=18.0
Q ss_pred ccccccCCCCCCCeEcCCCCccChhHHHHHHhcCCCCCCCCCCCCC
Q 018471 299 SKCTLCLSNRQDPTATPCGHVFCWNCIMEWCNEKPECPLCRAPITH 344 (355)
Q Consensus 299 ~~C~iC~~~~~~p~~~~CgH~fC~~Ci~~~~~~~~~CP~Cr~~~~~ 344 (355)
..|..|.+.+.......-|..|+..| +.|..|+.++..
T Consensus 16 ~~C~~C~~~I~~~~v~a~~~~~H~~C--------F~C~~C~~~L~~ 53 (79)
T 2cor_A 16 YICQKCHAIIDEQPLIFKNDPYHPDH--------FNCANCGKELTA 53 (79)
T ss_dssp CBCTTTCCBCCSCCCCCSSSCCCTTT--------SBCSSSCCBCCT
T ss_pred CCCccCCCEecceEEEECcceeCCCC--------CEeCCCCCccCC
Confidence 45555555444333333444444444 445555555543
No 107
>1weo_A Cellulose synthase, catalytic subunit (IRX3); structure genomics, ring-finger, riken structural genomics/proteomics initiative, RSGI; NMR {Arabidopsis thaliana} SCOP: g.44.1.1
Probab=50.87 E-value=19 Score=26.52 Aligned_cols=47 Identities=19% Similarity=0.439 Sum_probs=33.4
Q ss_pred CCccccccCCCCCC-----C--eEcCCCCccChhHHHHHH-hcCCCCCCCCCCCC
Q 018471 297 GVSKCTLCLSNRQD-----P--TATPCGHVFCWNCIMEWC-NEKPECPLCRAPIT 343 (355)
Q Consensus 297 ~~~~C~iC~~~~~~-----p--~~~~CgH~fC~~Ci~~~~-~~~~~CP~Cr~~~~ 343 (355)
....|.||.+..-. + .+-.|+-..|..|..--. ..+..||.|+.+..
T Consensus 15 ~~qiCqiCGD~VG~~~~Ge~FVAC~eC~FPvCrpCyEYErkeG~q~CpqCktrYk 69 (93)
T 1weo_A 15 DGQFCEICGDQIGLTVEGDLFVACNECGFPACRPCYEYERREGTQNCPQCKTRYK 69 (93)
T ss_dssp SSCBCSSSCCBCCBCSSSSBCCSCSSSCCCCCHHHHHHHHHTSCSSCTTTCCCCC
T ss_pred CCCccccccCccccCCCCCEEEeeeccCChhhHHHHHHHHhccCccccccCCccc
Confidence 34689999887431 1 233588888999986544 35579999988875
No 108
>2pv0_B DNA (cytosine-5)-methyltransferase 3-like; DNMT3L, unmethylated H3K4, de novo DNA methylation, transferase regulator; HET: DNA; 3.30A {Homo sapiens} PDB: 2pvc_B*
Probab=48.43 E-value=17 Score=34.43 Aligned_cols=46 Identities=22% Similarity=0.535 Sum_probs=33.3
Q ss_pred CCCccccccCCCCCCCeEc--CCCCccChhHHHHHHh----------cCCCCCCCCCC
Q 018471 296 PGVSKCTLCLSNRQDPTAT--PCGHVFCWNCIMEWCN----------EKPECPLCRAP 341 (355)
Q Consensus 296 ~~~~~C~iC~~~~~~p~~~--~CgH~fC~~Ci~~~~~----------~~~~CP~Cr~~ 341 (355)
..+.-|.+|.+--.--.+- .|...||..||...+. ..-.|-.|.-.
T Consensus 91 G~~~yCr~C~~Gg~l~~Cdn~~C~r~FC~~Ci~~n~g~~~~~~i~~~d~W~Cf~C~p~ 148 (386)
T 2pv0_B 91 GYQSYCSICCSGETLLICGNPDCTRCYCFECVDSLVGPGTSGKVHAMSNWVCYLCLPS 148 (386)
T ss_dssp SSBCSCTTTCCCSSCEECCSTTCCCEECHHHHHHHTCTTHHHHHHHCSSCCCTTTSSC
T ss_pred CCcccceEcCCCCeEEEeCCCCCCcchHHHHHHHhcChhHHHHhhccCCceEEEcCCc
Confidence 3467899998765433344 7999999999998762 23589999643
No 109
>3ttc_A HYPF, transcriptional regulatory protein; Zn finger, nucleotide binding, hydrogenase maturation factor transferase; HET: ADP; 1.86A {Escherichia coli} PDB: 3tsp_A* 3tsu_A* 3ttf_A* 3ttd_A 3tsq_A
Probab=48.28 E-value=6 Score=40.28 Aligned_cols=49 Identities=31% Similarity=0.757 Sum_probs=34.8
Q ss_pred CCCCCccccccCCCCCCC----------eEcCCCCcc--------------------ChhHHHHHHhc--------CCCC
Q 018471 294 AAPGVSKCTLCLSNRQDP----------TATPCGHVF--------------------CWNCIMEWCNE--------KPEC 335 (355)
Q Consensus 294 ~~~~~~~C~iC~~~~~~p----------~~~~CgH~f--------------------C~~Ci~~~~~~--------~~~C 335 (355)
..++--.|+-|+.++.+| .+|.||..| |..|-.++-.. -..|
T Consensus 13 i~pD~a~C~~Cl~e~~dp~~Rry~YpF~nCt~CGPR~tii~~lPYDR~~TsM~~F~mC~~C~~EY~dp~dRRfHAqp~aC 92 (657)
T 3ttc_A 13 IVPDAATCPACLAEMNTPGERRYRYPFINCTHCGPRFTIIRAMPYDRPFTVMAAFPLCPACDKEYRDPLDRRFHAQPVAC 92 (657)
T ss_dssp CCCCBCCCHHHHHHHTSTTSTTTTCTTCCBTTBBCSGGGBSSSSCSGGGBGGGGSCCCHHHHHHHHCTTSTTTTCTTCCC
T ss_pred cCCchhhhHHHHHHhcCCCCcccCCccccCcCCCchHHhcccCCCCCCCCcccCCCCChHHHHHhCCCCCCcCcCCCCcC
Confidence 344567888888776654 366777766 99999998652 2489
Q ss_pred CCCCCCC
Q 018471 336 PLCRAPI 342 (355)
Q Consensus 336 P~Cr~~~ 342 (355)
|.|.=.+
T Consensus 93 p~CGP~l 99 (657)
T 3ttc_A 93 PECGPYL 99 (657)
T ss_dssp TTTSCCE
T ss_pred cccCccc
Confidence 9997655
No 110
>3vth_A Hydrogenase maturation factor; carbamoyltransfer, maturation of [NIFE]-hydrogenase, carbamoylphosphate, iron, HYPE; HET: APC AP2; 2.00A {Thermoanaerobacter tengcongensis} PDB: 3vti_A
Probab=47.44 E-value=7.6 Score=40.30 Aligned_cols=49 Identities=31% Similarity=0.737 Sum_probs=36.1
Q ss_pred CCCCCccccccCCCCCCC----------eEcCCCCcc--------------------ChhHHHHHHhc--------CCCC
Q 018471 294 AAPGVSKCTLCLSNRQDP----------TATPCGHVF--------------------CWNCIMEWCNE--------KPEC 335 (355)
Q Consensus 294 ~~~~~~~C~iC~~~~~~p----------~~~~CgH~f--------------------C~~Ci~~~~~~--------~~~C 335 (355)
..++--.|+-|+.++.+| .+|.||..| |..|-.++-.. -..|
T Consensus 107 i~pD~a~C~~Cl~e~~dp~~Rry~ypF~nCt~CGPR~tii~~lPYDR~~TsM~~F~mC~~C~~EY~dp~~RRfhAqp~aC 186 (761)
T 3vth_A 107 VSPDMGVCEDCLRELKDPKDRRYRYPFINCTNCGPRFSIIEDIPYDRAKTSMKVFPMCEKCSREYHDPHDRRFHAQPVAC 186 (761)
T ss_dssp CCCCBCCCHHHHHHHTCTTSTTTTCTTCCBTTBBCSGGGBCSSSCCGGGBGGGGSCCCHHHHHHHTCTTSTTTTCTTCCC
T ss_pred cCCCccccHHHHHHhcCCCccccCCCcccCCCCCcchhhhccCCCCCCCCccccCCCCHHHHHHhcCcccccccCCCCcC
Confidence 456678999999877665 367788654 99999998642 2379
Q ss_pred CCCCCCC
Q 018471 336 PLCRAPI 342 (355)
Q Consensus 336 P~Cr~~~ 342 (355)
|.|.-.+
T Consensus 187 ~~CGP~l 193 (761)
T 3vth_A 187 FDCGPSL 193 (761)
T ss_dssp TTTSCCE
T ss_pred CccCCee
Confidence 9997654
No 111
>2d8x_A Protein pinch; LIM domain, pinch protein, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: g.39.1.3 g.39.1.3
Probab=47.18 E-value=15 Score=25.02 Aligned_cols=32 Identities=22% Similarity=0.410 Sum_probs=15.1
Q ss_pred CCccccccCCCCCCC-eEcCCCCccChhHHHHH
Q 018471 297 GVSKCTLCLSNRQDP-TATPCGHVFCWNCIMEW 328 (355)
Q Consensus 297 ~~~~C~iC~~~~~~p-~~~~CgH~fC~~Ci~~~ 328 (355)
+-+.|..|...+... ....-|.+||..|....
T Consensus 30 ~CF~C~~C~~~L~~~~f~~~~g~~yC~~c~~~~ 62 (70)
T 2d8x_A 30 ECFRCDLCQEVLADIGFVKNAGRHLCRPCHNRE 62 (70)
T ss_dssp TTSBCSSSCCBCSSSCCEEETTEEECHHHHHHH
T ss_pred cCCEeCCCCCcCCCCccEeECCeEECHHHhhhh
Confidence 345555555544432 22234455565555443
No 112
>2lbm_A Transcriptional regulator ATRX; metal binding protein-structural protein compl; HET: M3L; NMR {Homo sapiens} PDB: 2ld1_A
Probab=46.08 E-value=18 Score=29.17 Aligned_cols=45 Identities=20% Similarity=0.475 Sum_probs=32.0
Q ss_pred CCCccccccCCCCCCCeEcCCCCccChhHHHHHHh-----------cCCCCCCCCC
Q 018471 296 PGVSKCTLCLSNRQDPTATPCGHVFCWNCIMEWCN-----------EKPECPLCRA 340 (355)
Q Consensus 296 ~~~~~C~iC~~~~~~p~~~~CgH~fC~~Ci~~~~~-----------~~~~CP~Cr~ 340 (355)
..+..|.+|.+--.--..-.|-.+||..||.+-+. ....||.|..
T Consensus 61 g~~d~C~vC~~GG~LlcCD~Cpr~Fh~~Cl~p~l~~~~l~~i~~p~~~W~C~~C~~ 116 (142)
T 2lbm_A 61 GMDEQCRWCAEGGNLICCDFCHNAFCKKCILRNLGRKELSTIMDENNQWYCYICHP 116 (142)
T ss_dssp SCBCSCSSSCCCSSEEECSSSCCEEEHHHHHHHTCHHHHHHHHTSTTCCCCTTTCC
T ss_pred CCCCeecccCCCCcEEeCCCCCCeeeHhhcCCCCChhhhhhcccCCCCCEeecccC
Confidence 45678999987543233447889999999986542 2358999964
No 113
>2xjy_A Rhombotin-2; oncoprotein, T-cell leukemia, proto-oncogene, transcription, developmental protein; 2.40A {Homo sapiens} PDB: 2xjz_A
Probab=44.69 E-value=14 Score=28.80 Aligned_cols=49 Identities=16% Similarity=0.298 Sum_probs=35.7
Q ss_pred CCccccccCCCCC---CCeEcCCCCccChhHHHHHHhcCCCCCCCCCCCCCC
Q 018471 297 GVSKCTLCLSNRQ---DPTATPCGHVFCWNCIMEWCNEKPECPLCRAPITHS 345 (355)
Q Consensus 297 ~~~~C~iC~~~~~---~p~~~~CgH~fC~~Ci~~~~~~~~~CP~Cr~~~~~~ 345 (355)
+-+.|..|...+. .+....=|..||..|..........|..|.+++...
T Consensus 28 ~CF~C~~C~~~L~~~~~~~~~~~g~~yC~~~y~~~~~~~~~C~~C~~~I~~~ 79 (131)
T 2xjy_A 28 DCLSCDLCGCRLGEVGRRLYYKLGRKLCRRDYLRLFGQDGLCASCDKRIRAY 79 (131)
T ss_dssp TTCBCTTTCCBCSSTTCCEEEETTEEECHHHHHHHHCCCEECTTTCCEECTT
T ss_pred HHcccCcCCCccccCCCeEEEECCEEeecCchhhhCCCccChhhcCCccCcc
Confidence 5688888988774 345566788899999876554334799998888753
No 114
>2l43_A N-teminal domain from histone H3.3, linker, PHD1 from bromodomain-containing protein...; PHD finger, histone CODE, transcription; NMR {Homo sapiens}
Probab=43.08 E-value=4.7 Score=29.79 Aligned_cols=53 Identities=13% Similarity=0.264 Sum_probs=33.3
Q ss_pred CCCCccccccCCCCC-C--C--eEcCCCCccChhHHHHHHh--cCCCCCCCCCCCCCCCc
Q 018471 295 APGVSKCTLCLSNRQ-D--P--TATPCGHVFCWNCIMEWCN--EKPECPLCRAPITHSSL 347 (355)
Q Consensus 295 ~~~~~~C~iC~~~~~-~--p--~~~~CgH~fC~~Ci~~~~~--~~~~CP~Cr~~~~~~~~ 347 (355)
..++..|.+|...-. + . .+-.|.-.|+..|+..-.. ....||.|........+
T Consensus 22 ~~~~~~C~vC~~~~s~~~~~ll~CD~C~~~fH~~Cl~p~~vP~g~W~C~~C~~~~~~~~~ 81 (88)
T 2l43_A 22 IDEDAVCSICMDGESQNSNVILFCDMCNLAVHQECYGVPYIPEGQWLCRHCLQSRARPAL 81 (88)
T ss_dssp CCCCCCCSSCCSSSSCSEEEEEECSSSCCCCCHHHHTCSSCCSSCCCCHHHHHHTTSCC-
T ss_pred CCCCCcCCcCCCCCCCCCCCEEECCCCCchhhcccCCCCccCCCceECccccCccchhhh
Confidence 345688999987531 1 1 1236888899999864322 23579999765555444
No 115
>3ql9_A Transcriptional regulator ATRX; zinc finger, transcription, lysine trimethylation, protein, histone-binding protein, transcription-structural complex; HET: M3L; 0.93A {Homo sapiens} PDB: 3qla_A* 3qlc_A 3qln_A 2jm1_A
Probab=42.72 E-value=18 Score=28.75 Aligned_cols=45 Identities=22% Similarity=0.500 Sum_probs=30.7
Q ss_pred CCCccccccCCCCCCCeEcCCCCccChhHHHHHH-----------hcCCCCCCCCC
Q 018471 296 PGVSKCTLCLSNRQDPTATPCGHVFCWNCIMEWC-----------NEKPECPLCRA 340 (355)
Q Consensus 296 ~~~~~C~iC~~~~~~p~~~~CgH~fC~~Ci~~~~-----------~~~~~CP~Cr~ 340 (355)
..+..|.+|.+--.-...-.|-.+||..||.+.+ ...-.|+.|+.
T Consensus 55 g~~~~C~vC~dGG~LlcCd~Cpr~Fc~~Cl~~~lg~~~l~~i~~~~~~W~C~~C~~ 110 (129)
T 3ql9_A 55 GMDEQCRWCAEGGNLICCDFCHNAFCKKCILRNLGRRELSTIMDENNQWYCYICHP 110 (129)
T ss_dssp SCBSSCTTTCCCSEEEECSSSSCEEEHHHHHHHTCHHHHHHHTCTTSCCCCTTTCC
T ss_pred CCCCcCeecCCCCeeEecCCCchhhhHHHhCCCcchhHHHHhccCCCCeEcCCcCC
Confidence 3456699998753322334788999999998642 12358999954
No 116
>2dar_A PDZ and LIM domain protein 5; enigma homolog protein, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: g.39.1.3 g.39.1.3
Probab=42.24 E-value=22 Score=25.63 Aligned_cols=40 Identities=15% Similarity=0.330 Sum_probs=23.9
Q ss_pred CccccccCCCCCCCeEcCCCCccChhHHHHHHhcCCCCCCCCCCCCCC
Q 018471 298 VSKCTLCLSNRQDPTATPCGHVFCWNCIMEWCNEKPECPLCRAPITHS 345 (355)
Q Consensus 298 ~~~C~iC~~~~~~p~~~~CgH~fC~~Ci~~~~~~~~~CP~Cr~~~~~~ 345 (355)
...|..|.+.+.......-|..|+..| +.|..|+.++...
T Consensus 25 ~~~C~~C~~~I~~~~v~a~~~~~H~~C--------F~C~~C~~~L~~~ 64 (90)
T 2dar_A 25 TPMCAHCNQVIRGPFLVALGKSWHPEE--------FNCAHCKNTMAYI 64 (90)
T ss_dssp CCBBSSSCCBCCSCEEEETTEEECTTT--------CBCSSSCCBCSSS
T ss_pred CCCCccCCCEecceEEEECCccccccC--------CccCCCCCCCCCC
Confidence 456777776665555555555555555 5566676666543
No 117
>1wig_A KIAA1808 protein; LIM domain, zinc finger, metal-binding protein, structural genomics, riken structural genomics/proteomics initiative, RSGI; NMR {Homo sapiens} SCOP: g.39.1.3 g.39.1.3
Probab=42.16 E-value=23 Score=24.48 Aligned_cols=32 Identities=9% Similarity=0.118 Sum_probs=18.8
Q ss_pred CCccccccCCCCC--CCeEcCCCCccChhHHHHH
Q 018471 297 GVSKCTLCLSNRQ--DPTATPCGHVFCWNCIMEW 328 (355)
Q Consensus 297 ~~~~C~iC~~~~~--~p~~~~CgH~fC~~Ci~~~ 328 (355)
+-+.|..|...+. ......=|.+||..|....
T Consensus 30 ~CF~C~~C~~~L~~~~~f~~~~~~~yC~~C~~~~ 63 (73)
T 1wig_A 30 SCALCVRCGQMFAEGEEMYLQGSSIWHPACRQAA 63 (73)
T ss_dssp TTSCCSSSCCCCCSSCCCEEETTEEECTTHHHHT
T ss_pred CcCEeCCCCCCCCCCCeeEeeCCEEEChHHChHh
Confidence 4567777776665 2333345566777776543
No 118
>2rgt_A Fusion of LIM/homeobox protein LHX3, linker, INSU enhancer protein ISL-1; protein-protein complex, LIM domain, Zn finger, activator, D binding; 2.05A {Mus musculus} PDB: 3mmk_A
Probab=41.40 E-value=35 Score=27.83 Aligned_cols=50 Identities=16% Similarity=0.373 Sum_probs=36.3
Q ss_pred CCCccccccCCCCCCCeEcCCCCccChhHHHHHHhcCCCCCCCCCCCCCCCc
Q 018471 296 PGVSKCTLCLSNRQDPTATPCGHVFCWNCIMEWCNEKPECPLCRAPITHSSL 347 (355)
Q Consensus 296 ~~~~~C~iC~~~~~~p~~~~CgH~fC~~Ci~~~~~~~~~CP~Cr~~~~~~~~ 347 (355)
.+-+.|..|...+.......=|..||..|..... .+.|..|.+.+...++
T Consensus 31 ~~CF~C~~C~~~L~~~~f~~~g~~yC~~~y~~~f--~~~C~~C~~~I~~~~~ 80 (169)
T 2rgt_A 31 SKCLKCSDCHVPLAERCFSRGESVYCKDDFFKRF--GTKCAACQLGIPPTQV 80 (169)
T ss_dssp TTTSBCTTTCCBCCSCCEESSSCEECHHHHHHHH--SCBCTTTCCBCCTTSE
T ss_pred cccCccCCCCCcCCCCCcccCCeeeecccccccc--cccccccccccCCCcE
Confidence 3578899998877654445678889999976543 4678888888876543
No 119
>1wyh_A SLIM 2, skeletal muscle LIM-protein 2; structural genomics, riken structural genomics/proteomics initiative, RSGI, NPPSFA; NMR {Homo sapiens} SCOP: g.39.1.3 g.39.1.3
Probab=41.37 E-value=24 Score=24.06 Aligned_cols=31 Identities=16% Similarity=0.314 Sum_probs=15.4
Q ss_pred CCccccccCCCCCC-CeEcCCCCccChhHHHH
Q 018471 297 GVSKCTLCLSNRQD-PTATPCGHVFCWNCIME 327 (355)
Q Consensus 297 ~~~~C~iC~~~~~~-p~~~~CgH~fC~~Ci~~ 327 (355)
+-+.|..|...+.. +....=|.+||..|...
T Consensus 32 ~CF~C~~C~~~L~~~~~~~~~~~~yC~~cy~~ 63 (72)
T 1wyh_A 32 HCFLCSGCEQPLGSRSFVPDKGAHYCVPCYEN 63 (72)
T ss_dssp TTCBCTTTCCBTTTSCEEEETTEEEEHHHHHH
T ss_pred ccCeECCCCCcCCCCccCCcCCeEECHHHHHH
Confidence 34556666555443 22333455566666543
No 120
>1nyp_A Pinch protein; LIM domain, protein recognition, cell adhesion; NMR {Homo sapiens} SCOP: g.39.1.3 g.39.1.3 PDB: 1u5s_B
Probab=41.19 E-value=17 Score=24.47 Aligned_cols=25 Identities=12% Similarity=0.252 Sum_probs=10.7
Q ss_pred cccccCCCCCCCeEcCCCCccChhH
Q 018471 300 KCTLCLSNRQDPTATPCGHVFCWNC 324 (355)
Q Consensus 300 ~C~iC~~~~~~p~~~~CgH~fC~~C 324 (355)
.|+.|.+.+.......-|..|+..|
T Consensus 7 ~C~~C~~~I~~~~~~a~~~~~H~~C 31 (66)
T 1nyp_A 7 ICGACRRPIEGRVVNAMGKQWHVEH 31 (66)
T ss_dssp EETTTTEECCSCEECCTTSBEETTT
T ss_pred CCcccCCEecceEEEECccccccCc
Confidence 4555554444333333344444443
No 121
>2d8z_A Four and A half LIM domains 2; skeletal muscle LIM-protein 3, LIM-domain protein DRAL, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: g.39.1.3 g.39.1.3
Probab=39.09 E-value=26 Score=23.76 Aligned_cols=31 Identities=19% Similarity=0.472 Sum_probs=18.2
Q ss_pred CCccccccCCCCCC-CeEcCCCCccChhHHHH
Q 018471 297 GVSKCTLCLSNRQD-PTATPCGHVFCWNCIME 327 (355)
Q Consensus 297 ~~~~C~iC~~~~~~-p~~~~CgH~fC~~Ci~~ 327 (355)
+-+.|..|...+.. +....=|.+||..|...
T Consensus 30 ~CF~C~~C~~~L~~~~~~~~~~~~yC~~cy~~ 61 (70)
T 2d8z_A 30 ECFVCTACRKQLSGQRFTARDDFAYCLNCFCD 61 (70)
T ss_dssp TTSBCSSSCCBCTTSCCEESSSSEECHHHHHH
T ss_pred CCCccCCCCCcCCcCceEeeCCeEECHHHHHH
Confidence 45667777666543 23344566777777654
No 122
>1x4l_A Skeletal muscle LIM-protein 3; LIM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: g.39.1.3 g.39.1.3
Probab=38.86 E-value=37 Score=23.10 Aligned_cols=28 Identities=18% Similarity=0.345 Sum_probs=12.2
Q ss_pred CccccccCCCCCCC-eEcCCCCccChhHH
Q 018471 298 VSKCTLCLSNRQDP-TATPCGHVFCWNCI 325 (355)
Q Consensus 298 ~~~C~iC~~~~~~p-~~~~CgH~fC~~Ci 325 (355)
-+.|..|...+... ....=|.+||..|.
T Consensus 35 CF~C~~C~~~L~~~~f~~~~g~~yC~~c~ 63 (72)
T 1x4l_A 35 CFNCKKCSLSLVGRGFLTERDDILCPDCG 63 (72)
T ss_dssp TCBCSSSCCBCTTSCCEECSSSEECHHHH
T ss_pred cCEeccCCCcCCCCccEeECCEEEChhHc
Confidence 34555555444322 22234445555554
No 123
>1f62_A Transcription factor WSTF; Zn-finger; NMR {Homo sapiens} SCOP: g.50.1.2
Probab=38.45 E-value=15 Score=23.62 Aligned_cols=41 Identities=24% Similarity=0.671 Sum_probs=25.6
Q ss_pred cccccCCCCCCC---eEcCCCCccChhHHHHHHhc----CCCCCCCCC
Q 018471 300 KCTLCLSNRQDP---TATPCGHVFCWNCIMEWCNE----KPECPLCRA 340 (355)
Q Consensus 300 ~C~iC~~~~~~p---~~~~CgH~fC~~Ci~~~~~~----~~~CP~Cr~ 340 (355)
.|.+|...-... ..-.|...|+..|+..-+.. ...||.|..
T Consensus 2 ~C~vC~~~~~~~~ll~Cd~C~~~~H~~Cl~p~l~~~P~g~W~C~~C~~ 49 (51)
T 1f62_A 2 RCKVCRKKGEDDKLILCDECNKAFHLFCLRPALYEVPDGEWQCPACQP 49 (51)
T ss_dssp CCTTTCCSSCCSCCEECTTTCCEECHHHHCTTCCSCCSSCCSCTTTSC
T ss_pred CCCCCCCCCCCCCEEECCCCChhhCcccCCCCcCCCCCCcEECcCccc
Confidence 477777543211 22368888999999654432 347999964
No 124
>1v6g_A Actin binding LIM protein 2; LIM domain, zinc binding domain, ablim2, structural genomics, riken structural genomics/proteomics initiative, RSGI; NMR {Homo sapiens} SCOP: g.39.1.3 g.39.1.3
Probab=38.38 E-value=20 Score=25.24 Aligned_cols=38 Identities=21% Similarity=0.565 Sum_probs=23.1
Q ss_pred cccccCCCCCCCeEcCCCCccChhHHHHHHhcCCCCCCCCCCCCCC
Q 018471 300 KCTLCLSNRQDPTATPCGHVFCWNCIMEWCNEKPECPLCRAPITHS 345 (355)
Q Consensus 300 ~C~iC~~~~~~p~~~~CgH~fC~~Ci~~~~~~~~~CP~Cr~~~~~~ 345 (355)
.|+.|.+.+.......-+..|+..| +.|-.|+.++...
T Consensus 17 ~C~~C~~~I~~~~v~a~~~~wH~~C--------F~C~~C~~~L~~~ 54 (81)
T 1v6g_A 17 RCFSCDQFIEGEVVSALGKTYHPDC--------FVCAVCRLPFPPG 54 (81)
T ss_dssp BCTTTCCBCCSCCEEETTEEECTTT--------SSCSSSCCCCCSS
T ss_pred cCccccCEeccceEEECCceeCccC--------CccccCCCCCCCC
Confidence 6777777665444444555566555 5677777766543
No 125
>3c5k_A HD6, histone deacetylase 6; HDAC6, zinc finger, actin-binding, chromatin regulator, cytoplasm, hydrolase, metal-binding, nucleus, phosphoprotein; 1.55A {Homo sapiens} PDB: 3gv4_A 3phd_A
Probab=37.10 E-value=14 Score=28.35 Aligned_cols=26 Identities=19% Similarity=0.473 Sum_probs=21.2
Q ss_pred CccccccCCCCCCCeEcCCCCccChh
Q 018471 298 VSKCTLCLSNRQDPTATPCGHVFCWN 323 (355)
Q Consensus 298 ~~~C~iC~~~~~~p~~~~CgH~fC~~ 323 (355)
...|..|...-..-+++.|||++|..
T Consensus 24 ~~~C~~C~~~~~~W~CL~CG~vgCgr 49 (109)
T 3c5k_A 24 TQPCGDCGTIQENWVCLSCYQVYCGR 49 (109)
T ss_dssp TCCCTTTCCCSSEEEETTTCCEEECT
T ss_pred CCcCccccCCCCeeeeeecCccccCC
Confidence 56799998876667899999999953
No 126
>1x68_A FHL5 protein; four-and-A-half LIM protein 5, zinc finger domain, AN actin- interacting protein, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: g.39.1.3 g.39.1.3
Probab=36.64 E-value=27 Score=24.23 Aligned_cols=10 Identities=20% Similarity=0.521 Sum_probs=4.7
Q ss_pred cccccCCCCC
Q 018471 300 KCTLCLSNRQ 309 (355)
Q Consensus 300 ~C~iC~~~~~ 309 (355)
.|+.|.+.+.
T Consensus 7 ~C~~C~~~I~ 16 (76)
T 1x68_A 7 GCVACSKPIS 16 (76)
T ss_dssp CCTTTCCCCC
T ss_pred CCccCCCccc
Confidence 4555554444
No 127
>2lv9_A Histone-lysine N-methyltransferase MLL5; zinc finger, transcription, protein binding, NESG, northeast structural genomics consortium, SGC; NMR {Homo sapiens}
Probab=36.49 E-value=14 Score=27.74 Aligned_cols=43 Identities=19% Similarity=0.400 Sum_probs=27.1
Q ss_pred CCccccccCCCCCCCeEc---CCCCccChhHHHHHHh---cCCCCCCCCC
Q 018471 297 GVSKCTLCLSNRQDPTAT---PCGHVFCWNCIMEWCN---EKPECPLCRA 340 (355)
Q Consensus 297 ~~~~C~iC~~~~~~p~~~---~CgH~fC~~Ci~~~~~---~~~~CP~Cr~ 340 (355)
+...| ||.........+ .|..-|+..|+..-.. ....||.|+.
T Consensus 27 d~vrC-iC~~~~~~~~mi~Cd~C~~w~H~~C~~~~~~~~p~~w~C~~C~~ 75 (98)
T 2lv9_A 27 DVTRC-ICGFTHDDGYMICCDKCSVWQHIDCMGIDRQHIPDTYLCERCQP 75 (98)
T ss_dssp CBCCC-TTSCCSCSSCEEEBTTTCBEEETTTTTCCTTSCCSSBCCTTTSS
T ss_pred CCEEe-ECCCccCCCcEEEcCCCCCcCcCcCCCCCccCCCCCEECCCCcC
Confidence 45677 787654443333 5777788888754222 2358999964
No 128
>2cuq_A Four and A half LIM domains 3; structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: g.39.1.3 g.39.1.3
Probab=36.36 E-value=32 Score=23.93 Aligned_cols=29 Identities=17% Similarity=0.347 Sum_probs=12.8
Q ss_pred CccccccCCCCCC-CeEcCCCCccChhHHH
Q 018471 298 VSKCTLCLSNRQD-PTATPCGHVFCWNCIM 326 (355)
Q Consensus 298 ~~~C~iC~~~~~~-p~~~~CgH~fC~~Ci~ 326 (355)
-+.|..|...+.. .....=|.+||..|..
T Consensus 41 CF~C~~C~~~L~~~~~~~~~~~~yC~~cy~ 70 (80)
T 2cuq_A 41 CLVCTGCQTPLAGQQFTSRDEDPYCVACFG 70 (80)
T ss_dssp TCBCSSSCCBCTTCCEEECSSSEEEHHHHH
T ss_pred hCCcccCCCcCCCCeeEeECCEEECHHHHH
Confidence 3455555444432 2233344455555543
No 129
>1rut_X Flinc4, fusion protein of LMO4 protein and LIM domain- binding protein 1; B-tandem zipper, protein binding; 1.30A {Mus musculus} SCOP: g.39.1.3 g.39.1.3 g.39.1.3 g.39.1.3 PDB: 2dfy_X 2xjz_I 2xjy_B
Probab=36.30 E-value=8.5 Score=32.35 Aligned_cols=49 Identities=24% Similarity=0.506 Sum_probs=34.3
Q ss_pred CCccccccCCCCCC---CeEcCCCCccChhHHHHHHhcCCCCCCCCCCCCCC
Q 018471 297 GVSKCTLCLSNRQD---PTATPCGHVFCWNCIMEWCNEKPECPLCRAPITHS 345 (355)
Q Consensus 297 ~~~~C~iC~~~~~~---p~~~~CgH~fC~~Ci~~~~~~~~~CP~Cr~~~~~~ 345 (355)
+-+.|..|...+.. +....=|..||..|.......+..|..|.+++...
T Consensus 31 ~CF~C~~C~~~L~~~g~~~~~~~g~~yC~~cy~~~~~~~~~C~~C~~~I~~~ 82 (188)
T 1rut_X 31 RCLKCSSCQAQLGDIGTSSYTKSGMILCRNDYIRLFGNSGACSACGQSIPAS 82 (188)
T ss_dssp GGCBCTTTCCBHHHHCSEEEEETTEEECHHHHHHHHSCCEECTTTCCEECTT
T ss_pred cCcccCCCCcccccCCceEEEeCCccccccccccccccCCccccCCCccccC
Confidence 46788888877653 44556678899999876543333699998888753
No 130
>2cur_A Skeletal muscle LIM-protein 1; four and A half LIM domains protein 1, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: g.39.1.3 g.39.1.3
Probab=36.06 E-value=31 Score=23.29 Aligned_cols=32 Identities=13% Similarity=0.391 Sum_probs=17.5
Q ss_pred CCccccccCCCCCC-CeEcCCCCccChhHHHHH
Q 018471 297 GVSKCTLCLSNRQD-PTATPCGHVFCWNCIMEW 328 (355)
Q Consensus 297 ~~~~C~iC~~~~~~-p~~~~CgH~fC~~Ci~~~ 328 (355)
+-+.|..|...+.. .....=|.+||..|....
T Consensus 30 ~CF~C~~C~~~L~~~~~~~~~~~~yC~~cy~~~ 62 (69)
T 2cur_A 30 DCFVCVTCSKKLAGQRFTAVEDQYYCVDCYKNF 62 (69)
T ss_dssp TTTBCTTTCCBCTTSCEEECSSCEEEHHHHHHH
T ss_pred CcCEECCCCCCCCCCccEeECCEEECHHHhHHH
Confidence 44566666665543 233344666676666543
No 131
>2jmo_A Parkin; IBR, E3 ligase, zinc binding domain, RBR; NMR {Homo sapiens}
Probab=35.97 E-value=3.1 Score=30.11 Aligned_cols=16 Identities=31% Similarity=0.945 Sum_probs=13.7
Q ss_pred CCCCccChhHHHHHHh
Q 018471 315 PCGHVFCWNCIMEWCN 330 (355)
Q Consensus 315 ~CgH~fC~~Ci~~~~~ 330 (355)
.||+.||..|...|..
T Consensus 55 ~C~~~FC~~C~~~wH~ 70 (80)
T 2jmo_A 55 GCGFAFCRECKEAYHE 70 (80)
T ss_dssp CCSCCEETTTTEECCS
T ss_pred CCCCeeccccCccccC
Confidence 6999999999887754
No 132
>2yql_A PHD finger protein 21A; PHD domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=35.65 E-value=3.3 Score=27.66 Aligned_cols=44 Identities=20% Similarity=0.454 Sum_probs=27.0
Q ss_pred CCCccccccCCCCCCCeEcCCCCccChhHHHHHHhc----CCCCCCCC
Q 018471 296 PGVSKCTLCLSNRQDPTATPCGHVFCWNCIMEWCNE----KPECPLCR 339 (355)
Q Consensus 296 ~~~~~C~iC~~~~~~p~~~~CgH~fC~~Ci~~~~~~----~~~CP~Cr 339 (355)
..+..|.+|...-.--..-.|...|+..|+.+-+.. ...||.|.
T Consensus 7 ~~~~~C~vC~~~g~ll~Cd~C~~~~H~~Cl~ppl~~~p~g~W~C~~C~ 54 (56)
T 2yql_A 7 GHEDFCSVCRKSGQLLMCDTCSRVYHLDCLDPPLKTIPKGMWICPRCQ 54 (56)
T ss_dssp SSCCSCSSSCCSSCCEECSSSSCEECSSSSSSCCCSCCCSSCCCHHHH
T ss_pred CCCCCCccCCCCCeEEEcCCCCcceECccCCCCcCCCCCCceEChhhh
Confidence 345679999875322233468888888888653322 23577664
No 133
>1x63_A Skeletal muscle LIM-protein 1; LIM domain, four and A half LIM domains protein 1, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: g.39.1.3 g.39.1.3
Probab=35.63 E-value=35 Score=23.91 Aligned_cols=37 Identities=27% Similarity=0.549 Sum_probs=16.2
Q ss_pred cccccCCCCC--CCeEcCCCCccChhHHHHHHhcCCCCCCCCCCCCC
Q 018471 300 KCTLCLSNRQ--DPTATPCGHVFCWNCIMEWCNEKPECPLCRAPITH 344 (355)
Q Consensus 300 ~C~iC~~~~~--~p~~~~CgH~fC~~Ci~~~~~~~~~CP~Cr~~~~~ 344 (355)
.|..|.+.+. +.+...-+..|+..| +.|-.|+.++..
T Consensus 17 ~C~~C~~~I~~~~~~~~a~~~~~H~~C--------F~C~~C~~~L~~ 55 (82)
T 1x63_A 17 KCKGCFKAIVAGDQNVEYKGTVWHKDC--------FTCSNCKQVIGT 55 (82)
T ss_dssp BCSSSCCBCCSSSCEEECSSCEEETTT--------CCCSSSCCCCTT
T ss_pred cCccCCcccccCceEEEECcccccccc--------CchhhCCCccCC
Confidence 4555554444 222333344444444 345555544443
No 134
>3fyb_A Protein of unknown function (DUF1244); hydrocar degrading, structural genomics, PSI-2; HET: PEG; 1.80A {Alcanivorax borkumensis SK2}
Probab=35.60 E-value=15 Score=27.67 Aligned_cols=11 Identities=45% Similarity=1.392 Sum_probs=9.9
Q ss_pred cChhHHHHHHh
Q 018471 320 FCWNCIMEWCN 330 (355)
Q Consensus 320 fC~~Ci~~~~~ 330 (355)
||..|+..|..
T Consensus 42 FCRNCLskWy~ 52 (104)
T 3fyb_A 42 FCRNCLAKWLM 52 (104)
T ss_dssp CCHHHHHHHHH
T ss_pred HHHHHHHHHHH
Confidence 89999999976
No 135
>2o35_A Hypothetical protein DUF1244; helix bundle, structural genomics, PSI-2, protein structure initiative; HET: MSE; 2.12A {Sinorhizobium meliloti} SCOP: a.293.1.1
Probab=35.41 E-value=15 Score=27.69 Aligned_cols=11 Identities=45% Similarity=1.467 Sum_probs=9.9
Q ss_pred cChhHHHHHHh
Q 018471 320 FCWNCIMEWCN 330 (355)
Q Consensus 320 fC~~Ci~~~~~ 330 (355)
||..|+..|..
T Consensus 43 FCRNCLskWy~ 53 (105)
T 2o35_A 43 FCRNCLSNWYR 53 (105)
T ss_dssp CCHHHHHHHHH
T ss_pred HHHHHHHHHHH
Confidence 89999999975
No 136
>1x6a_A LIMK-2, LIM domain kinase 2; LIM-kinase 2, zinc finger domain, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: g.39.1.3 g.39.1.3
Probab=34.61 E-value=28 Score=24.41 Aligned_cols=31 Identities=23% Similarity=0.429 Sum_probs=14.3
Q ss_pred CCccccccCCCCCC--CeE-cCCCCccChhHHHH
Q 018471 297 GVSKCTLCLSNRQD--PTA-TPCGHVFCWNCIME 327 (355)
Q Consensus 297 ~~~~C~iC~~~~~~--p~~-~~CgH~fC~~Ci~~ 327 (355)
+-+.|..|...+.. ... ..=|.+||..|...
T Consensus 40 ~CF~C~~C~~~L~~g~~f~~~~~~~~~C~~c~~~ 73 (81)
T 1x6a_A 40 ECFACMSCKVIIEDGDAYALVQHATLYCGKCHNE 73 (81)
T ss_dssp TSCBCTTTCCBCCTTSCEEECSSSCEEEHHHHHH
T ss_pred ccCCccCCCCccCCCCcEEEeeCCEEECHHHHHH
Confidence 34555555555432 222 13445555555543
No 137
>2co8_A NEDD9 interacting protein with calponin homology and LIM domains; zinc finger protein, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: g.39.1.3 g.39.1.3
Probab=34.52 E-value=47 Score=23.45 Aligned_cols=42 Identities=24% Similarity=0.443 Sum_probs=24.9
Q ss_pred CCccccccCCCCCC-CeEcCCCCccChhHHHHHHhcCCCCCCCCCCCCCCC
Q 018471 297 GVSKCTLCLSNRQD-PTATPCGHVFCWNCIMEWCNEKPECPLCRAPITHSS 346 (355)
Q Consensus 297 ~~~~C~iC~~~~~~-p~~~~CgH~fC~~Ci~~~~~~~~~CP~Cr~~~~~~~ 346 (355)
....|..|.+.+.. .....-+..|+..| +.|-.|+..+....
T Consensus 14 ~~~~C~~C~~~I~~~e~v~a~~~~wH~~C--------F~C~~C~~~L~~~~ 56 (82)
T 2co8_A 14 AGDLCALCGEHLYVLERLCVNGHFFHRSC--------FRCHTCEATLWPGG 56 (82)
T ss_dssp SSCBCSSSCCBCCTTTBCCBTTBCCBTTT--------CBCSSSCCBCCTTS
T ss_pred CCCCCcccCCCcccceEEEECCCeeCCCc--------CEEcCCCCCcCCCc
Confidence 45678888876642 23334455566666 56777777665433
No 138
>2jtn_A LIM domain-binding protein 1, LIM/homeobox protein LHX3; intramolecular (fusion) protein-protein complex, protein binding/transcription complex; NMR {Mus musculus}
Probab=34.43 E-value=35 Score=28.24 Aligned_cols=48 Identities=17% Similarity=0.351 Sum_probs=33.3
Q ss_pred CCccccccCCCCCCCeEcCCCCccChhHHHHHHhcCCCCCCCCCCCCCCC
Q 018471 297 GVSKCTLCLSNRQDPTATPCGHVFCWNCIMEWCNEKPECPLCRAPITHSS 346 (355)
Q Consensus 297 ~~~~C~iC~~~~~~p~~~~CgH~fC~~Ci~~~~~~~~~CP~Cr~~~~~~~ 346 (355)
+-+.|..|...+.......=|..||..|.... -.+.|..|++++...+
T Consensus 86 ~CF~C~~C~~~L~~~~f~~~g~~yC~~~y~~~--f~~kC~~C~~~I~~~~ 133 (182)
T 2jtn_A 86 KCLKCSDCHVPLAERCFSRGESVYCKDDFFKR--FGTKCAACQLGIPPTQ 133 (182)
T ss_dssp STTSCTTTCCCCSSCCEEETTEEECHHHHHHT--TSCCCTTTCCCCCSSC
T ss_pred ccCccCCCCCccCCCceeECCEeeecCccccc--cccccccCCCccCCCc
Confidence 56788888777665434456778888887542 3468999988887543
No 139
>2cu8_A Cysteine-rich protein 2; CRP2, CRIP2, ESP1 protein, zinc-binding, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: g.39.1.3 g.39.1.3
Probab=34.27 E-value=24 Score=24.45 Aligned_cols=10 Identities=30% Similarity=0.604 Sum_probs=4.4
Q ss_pred ccccccCCCC
Q 018471 299 SKCTLCLSNR 308 (355)
Q Consensus 299 ~~C~iC~~~~ 308 (355)
+.|..|...+
T Consensus 37 F~C~~C~~~L 46 (76)
T 2cu8_A 37 LKCERCSKTL 46 (76)
T ss_dssp CBCSSSCCBC
T ss_pred CCCCCCCCcc
Confidence 4444444433
No 140
>1xwh_A Autoimmune regulator; PHD domain, Zn binding domain, apeced, nucleosome, E3 ligase, transcription; NMR {Homo sapiens} PDB: 2ke1_A 2kft_A
Probab=34.12 E-value=4.8 Score=27.87 Aligned_cols=45 Identities=16% Similarity=0.381 Sum_probs=28.2
Q ss_pred CCCccccccCCCCCCCeEcCCCCccChhHHHHHHh----cCCCCCCCCC
Q 018471 296 PGVSKCTLCLSNRQDPTATPCGHVFCWNCIMEWCN----EKPECPLCRA 340 (355)
Q Consensus 296 ~~~~~C~iC~~~~~~p~~~~CgH~fC~~Ci~~~~~----~~~~CP~Cr~ 340 (355)
..+..|.+|...-.--..-.|...|+..|+..-+. ....||.|..
T Consensus 6 ~~~~~C~vC~~~g~ll~CD~C~~~fH~~Cl~ppl~~~P~g~W~C~~C~~ 54 (66)
T 1xwh_A 6 KNEDECAVCRDGGELICCDGCPRAFHLACLSPPLREIPSGTWRCSSCLQ 54 (66)
T ss_dssp SCCCSBSSSSCCSSCEECSSCCCEECTTTSSSCCSSCCSSCCCCHHHHH
T ss_pred CCCCCCccCCCCCCEEEcCCCChhhcccccCCCcCcCCCCCeECccccC
Confidence 34678999986432223336877888888864332 2246888854
No 141
>2xqn_T Testin, TESS; metal-binding protein, cytoskeleton, focal adhesion, acrosom; 2.62A {Homo sapiens}
Probab=34.04 E-value=33 Score=26.33 Aligned_cols=47 Identities=17% Similarity=0.209 Sum_probs=35.5
Q ss_pred CCccccccCCCCCCC-eEcCCCCccChhHHHHHHhcCCCCCCCCCCCCCC
Q 018471 297 GVSKCTLCLSNRQDP-TATPCGHVFCWNCIMEWCNEKPECPLCRAPITHS 345 (355)
Q Consensus 297 ~~~~C~iC~~~~~~p-~~~~CgH~fC~~Ci~~~~~~~~~CP~Cr~~~~~~ 345 (355)
+-+.|..|...+... ....-|..||..|.... ..+.|..|.+++...
T Consensus 29 ~CF~C~~C~~~L~~~~f~~~~g~~yC~~cy~~~--~~~~C~~C~~~I~~~ 76 (126)
T 2xqn_T 29 KHFCCFDCDSILAGEIYVMVNDKPVCKPCYVKN--HAVVCQGCHNAIDPE 76 (126)
T ss_dssp GGSBCTTTCCBCTTSEEEEETTEEEEHHHHHHH--SCCBCTTTCSBCCTT
T ss_pred CCCCcCCCCCCCCcCEEEeECCEEechHHhCcC--cCccCcccCCcCCcC
Confidence 468899998877653 44567888999997653 457899999998853
No 142
>2k16_A Transcription initiation factor TFIID subunit 3; protein, alternative splicing, metal-binding, nucleus, phosphoprotein, transcription regulation; NMR {Mus musculus} PDB: 2k17_A*
Probab=33.50 E-value=9.3 Score=26.97 Aligned_cols=49 Identities=18% Similarity=0.456 Sum_probs=31.5
Q ss_pred CCCccccccCCCCCCCeE---cCCCCccChhHHHHHHh----cCCCCCCCCCCCCC
Q 018471 296 PGVSKCTLCLSNRQDPTA---TPCGHVFCWNCIMEWCN----EKPECPLCRAPITH 344 (355)
Q Consensus 296 ~~~~~C~iC~~~~~~p~~---~~CgH~fC~~Ci~~~~~----~~~~CP~Cr~~~~~ 344 (355)
.+...|.+|...-..... -.|..-|+..|+..-.. ....||.|...+..
T Consensus 16 ~~~~~C~~C~~~~~~~~mi~CD~C~~wfH~~Cv~~~~~~~~~~~w~C~~C~~~~~k 71 (75)
T 2k16_A 16 NQIWICPGCNKPDDGSPMIGCDDCDDWYHWPCVGIMAAPPEEMQWFCPKCANKIKK 71 (75)
T ss_dssp CEEECBTTTTBCCSSCCEEECSSSSSEEEHHHHTCSSCCCSSSCCCCTTTHHHHCS
T ss_pred CCCcCCCCCCCCCCCCCEEEcCCCCcccccccCCCCccCCCCCCEEChhccCchhh
Confidence 345679999876432222 26777899999864332 24589999766543
No 143
>3a1b_A DNA (cytosine-5)-methyltransferase 3A, histone H3; zinc-finger, histone binding, chromosomal protein, DNA damag repair, DNA-binding, methylation; HET: DNA; 2.29A {Homo sapiens} PDB: 3a1a_A*
Probab=33.10 E-value=31 Score=28.34 Aligned_cols=44 Identities=25% Similarity=0.549 Sum_probs=30.1
Q ss_pred CCccccccCCCCCCCeEc--CCCCccChhHHHHHHhc----------CCCCCCCCC
Q 018471 297 GVSKCTLCLSNRQDPTAT--PCGHVFCWNCIMEWCNE----------KPECPLCRA 340 (355)
Q Consensus 297 ~~~~C~iC~~~~~~p~~~--~CgH~fC~~Ci~~~~~~----------~~~CP~Cr~ 340 (355)
-+.-|.+|.+--.--..- +|...||..||...+.. .-.|-+|.-
T Consensus 78 ~~~yC~wC~~Gg~l~~Cdn~~C~r~FC~~CI~~nvG~~~~~~i~~~d~W~Cy~C~P 133 (159)
T 3a1b_A 78 YQSYCTICCGGREVLMCGNNNCCRCFCVECVDLLVGPGAAQAAIKEDPWNCYMCGH 133 (159)
T ss_dssp SBSSCTTTSCCSEEEECSSTTTCCEEEHHHHHHHTCTTHHHHHHTSSSCCCTTTCS
T ss_pred CcceeeEecCCCeEEeeCCCCCCCchhHHHHHHhcCHhHHHHHhccCCCEEEecCC
Confidence 456899998753222222 68889999999887542 247999954
No 144
>1x4k_A Skeletal muscle LIM-protein 3; LIM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: g.39.1.3 g.39.1.3
Probab=32.98 E-value=32 Score=23.38 Aligned_cols=30 Identities=17% Similarity=0.301 Sum_probs=15.0
Q ss_pred CccccccCCCCCCC-eEcCCCCccChhHHHH
Q 018471 298 VSKCTLCLSNRQDP-TATPCGHVFCWNCIME 327 (355)
Q Consensus 298 ~~~C~iC~~~~~~p-~~~~CgH~fC~~Ci~~ 327 (355)
-+.|..|...+... ....=|.+||..|...
T Consensus 33 CF~C~~C~~~L~~~~~~~~~~~~yC~~cy~~ 63 (72)
T 1x4k_A 33 CFICHRCQQPIGTKSFIPKDNQNFCVPCYEK 63 (72)
T ss_dssp TTCCSSSCCCCCSSSEEEETTEEEEHHHHHH
T ss_pred CCcccccCCccCCCccCccCCeEECHHHHhH
Confidence 45566665555432 2233455566666543
No 145
>1x61_A Thyroid receptor interacting protein 6; LIM domain, OPA-interacting protein 1, zyxin related protein 1 (ZRP-1), structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: g.39.1.3 g.39.1.3
Probab=30.70 E-value=60 Score=21.93 Aligned_cols=33 Identities=15% Similarity=0.358 Sum_probs=20.6
Q ss_pred CCccccccCCCCCCC-eEcCCCCccChhHHHHHH
Q 018471 297 GVSKCTLCLSNRQDP-TATPCGHVFCWNCIMEWC 329 (355)
Q Consensus 297 ~~~~C~iC~~~~~~p-~~~~CgH~fC~~Ci~~~~ 329 (355)
+-+.|..|...+... ....=|.+||..|..+.+
T Consensus 32 ~CF~C~~C~~~L~~~~~~~~~~~~yC~~cy~~~~ 65 (72)
T 1x61_A 32 GCFVCSTCRAQLRGQHFYAVERRAYCEGCYVATL 65 (72)
T ss_dssp TTCBCSSSCCBCTTSCEEESSSCEEEHHHHHHHH
T ss_pred cCCcccccCCcCCcCcCEeeCCeEECHHHHHHHH
Confidence 456777777666432 344556777777776554
No 146
>3mjh_B Early endosome antigen 1; protein-zinc finger complex, beta BETA alpha fold, beta HAIR RAB5A GTPase, EEA1, protein transport; HET: GTP; 2.03A {Homo sapiens}
Probab=30.67 E-value=7.3 Score=23.40 Aligned_cols=14 Identities=14% Similarity=0.351 Sum_probs=8.7
Q ss_pred CccccccCCCCCCC
Q 018471 298 VSKCTLCLSNRQDP 311 (355)
Q Consensus 298 ~~~C~iC~~~~~~p 311 (355)
.+.||+|+..+.++
T Consensus 5 GFiCP~C~~~l~s~ 18 (34)
T 3mjh_B 5 GFICPQCMKSLGSA 18 (34)
T ss_dssp EEECTTTCCEESSH
T ss_pred ccCCcHHHHHcCCH
Confidence 46777777665543
No 147
>1x3h_A Leupaxin; paxillin family, protein-protein interaction, LIM domain, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: g.39.1.3 g.39.1.3
Probab=30.34 E-value=31 Score=24.07 Aligned_cols=29 Identities=17% Similarity=0.213 Sum_probs=12.7
Q ss_pred CccccccCCCCCC-CeEcCCCCccChhHHH
Q 018471 298 VSKCTLCLSNRQD-PTATPCGHVFCWNCIM 326 (355)
Q Consensus 298 ~~~C~iC~~~~~~-p~~~~CgH~fC~~Ci~ 326 (355)
-+.|..|...+.. .....=|.+||..|..
T Consensus 41 CF~C~~C~~~L~~~~~~~~~~~~yC~~~y~ 70 (80)
T 1x3h_A 41 CFVCGDCFTSFSTGSFFELDGRPFCELHYH 70 (80)
T ss_dssp TCBCSSSCCBSCSSCCEESSSCEECHHHHH
T ss_pred cCChhhCCCCCCCCcEEeECCEEECHHHHH
Confidence 3455555444432 1222334455555543
No 148
>2d8y_A Eplin protein; LIM domain, epithelial protein LOST in neoplasm, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: g.39.1.3 g.39.1.3
Probab=30.13 E-value=73 Score=22.78 Aligned_cols=32 Identities=16% Similarity=0.369 Sum_probs=20.8
Q ss_pred CCccccccCCCCCCC-eEcCCCCccChhHHHHH
Q 018471 297 GVSKCTLCLSNRQDP-TATPCGHVFCWNCIMEW 328 (355)
Q Consensus 297 ~~~~C~iC~~~~~~p-~~~~CgH~fC~~Ci~~~ 328 (355)
+-+.|..|...+... ....=|.+||..|....
T Consensus 41 ~CF~C~~C~~~L~~~~~~~~~g~~yC~~~y~~~ 73 (91)
T 2d8y_A 41 SCFRCSYCNNKLSLGTYASLHGRIYCKPHFNQL 73 (91)
T ss_dssp TTCBCTTTCCBCCTTTCCCSSSCCCCHHHHHHH
T ss_pred CCCeeCCCCCCCCCCCcEeECCEEECHHHHHHH
Confidence 457778887766543 34455677888887554
No 149
>1g47_A Pinch protein; LIM domain, Zn finger, cell adhesion; NMR {Homo sapiens} SCOP: g.39.1.3 g.39.1.3
Probab=29.61 E-value=41 Score=23.12 Aligned_cols=38 Identities=16% Similarity=0.448 Sum_probs=17.2
Q ss_pred CccccccCCCCC--CCeEcCCCCccChhHHHHHHhcCCCCCCCCCCCC
Q 018471 298 VSKCTLCLSNRQ--DPTATPCGHVFCWNCIMEWCNEKPECPLCRAPIT 343 (355)
Q Consensus 298 ~~~C~iC~~~~~--~p~~~~CgH~fC~~Ci~~~~~~~~~CP~Cr~~~~ 343 (355)
...|+.|.+.+. ..+...-|..|+..| +.|-.|+.++.
T Consensus 11 ~~~C~~C~~~I~~~~~~~~a~~~~~H~~C--------F~C~~C~~~L~ 50 (77)
T 1g47_A 11 SATCERCKGGFAPAEKIVNSNGELYHEQC--------FVCAQCFQQFP 50 (77)
T ss_dssp CCBCSSSCCBCCSTTTCEEETTEEECTTT--------CCCTTTCCCCG
T ss_pred CCCchhcCCccCCCceEEEeCccEecccc--------CeECCCCCCCC
Confidence 345555555443 222223344444444 44555555544
No 150
>2puy_A PHD finger protein 21A; PHD finger, histone CODE, BRAF-HDAC complex, transcription; 1.43A {Homo sapiens}
Probab=29.07 E-value=7.3 Score=26.31 Aligned_cols=44 Identities=20% Similarity=0.458 Sum_probs=25.3
Q ss_pred CCccccccCCCCCCCeEcCCCCccChhHHHHHHh----cCCCCCCCCC
Q 018471 297 GVSKCTLCLSNRQDPTATPCGHVFCWNCIMEWCN----EKPECPLCRA 340 (355)
Q Consensus 297 ~~~~C~iC~~~~~~p~~~~CgH~fC~~Ci~~~~~----~~~~CP~Cr~ 340 (355)
.+..|.+|...-.--..-.|...|+..|+.+-+. ....||.|..
T Consensus 4 ~~~~C~vC~~~g~ll~Cd~C~~~fH~~Cl~ppl~~~p~g~W~C~~C~~ 51 (60)
T 2puy_A 4 HEDFCSVCRKSGQLLMCDTCSRVYHLDCLDPPLKTIPKGMWICPRCQD 51 (60)
T ss_dssp CCSSCTTTCCCSSCEECSSSSCEECGGGSSSCCSSCCCSCCCCHHHHH
T ss_pred CCCCCcCCCCCCcEEEcCCCCcCEECCcCCCCcCCCCCCceEChhccC
Confidence 3457888876422222336777788888764332 1235777743
No 151
>2dlo_A Thyroid receptor-interacting protein 6; LIM domain, OPA-interacting protein 1, zyxin related protein 1 (ZRP-1), structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: g.39.1.3 g.39.1.3
Probab=28.95 E-value=30 Score=24.25 Aligned_cols=29 Identities=14% Similarity=0.316 Sum_probs=13.3
Q ss_pred CccccccCCCCCCCeEc-C-CCCccChhHHH
Q 018471 298 VSKCTLCLSNRQDPTAT-P-CGHVFCWNCIM 326 (355)
Q Consensus 298 ~~~C~iC~~~~~~p~~~-~-CgH~fC~~Ci~ 326 (355)
-+.|..|...+...... . =|.+||..|..
T Consensus 41 CF~C~~C~~~L~~~~f~~~~~g~~yC~~cy~ 71 (81)
T 2dlo_A 41 CFTCVVCHRGLDGIPFTVDATSQIHCIEDFH 71 (81)
T ss_dssp TCBCSSSCCBCTTSCEECCTTCCCEEHHHHH
T ss_pred hcCcccCCCccCCCeeEECCCCEEECHHHHH
Confidence 45555555544432222 1 24555555553
No 152
>2dj7_A Actin-binding LIM protein 3; LIM domain, Zn binding protein, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: g.39.1.3 g.39.1.3
Probab=28.02 E-value=49 Score=23.25 Aligned_cols=38 Identities=18% Similarity=0.429 Sum_probs=20.2
Q ss_pred CccccccCCCCC-CCeEcCCCCccChhHHHHHHhcCCCCCCCCCCCC
Q 018471 298 VSKCTLCLSNRQ-DPTATPCGHVFCWNCIMEWCNEKPECPLCRAPIT 343 (355)
Q Consensus 298 ~~~C~iC~~~~~-~p~~~~CgH~fC~~Ci~~~~~~~~~CP~Cr~~~~ 343 (355)
...|..|.+.+. ......-+..|+..| +.|..|+.++.
T Consensus 15 ~~~C~~C~~~I~~~~~v~a~~~~wH~~C--------F~C~~C~~~L~ 53 (80)
T 2dj7_A 15 PSHCAGCKEEIKHGQSLLALDKQWHVSC--------FKCQTCSVILT 53 (80)
T ss_dssp CSCCTTTCCCCSSSCCEEETTEEECTTT--------CBCSSSCCBCS
T ss_pred CCCCcCcCCeeCCCeEEEECCccccccc--------CCcCcCCCCcC
Confidence 456777766554 222333444455555 55666666554
No 153
>2uzg_A Ubiquitin carboxyl-terminal hydrolase 33; UBL conjugation pathway, DE-ubiquitination, alternative splicing, metal-binding, thiol protease; NMR {Homo sapiens} SCOP: g.44.1.5
Probab=27.51 E-value=27 Score=26.04 Aligned_cols=26 Identities=19% Similarity=0.392 Sum_probs=19.7
Q ss_pred CccccccCCCCCC-CeEcC--CCCccChh
Q 018471 298 VSKCTLCLSNRQD-PTATP--CGHVFCWN 323 (355)
Q Consensus 298 ~~~C~iC~~~~~~-p~~~~--CgH~fC~~ 323 (355)
...|..|...-.+ -.++. |||++|..
T Consensus 25 ~~~C~~C~~~~~~lw~CL~~~Cg~vgCgr 53 (97)
T 2uzg_A 25 LGTCQDCKVQGPNLWACLENRCSYVGCGE 53 (97)
T ss_dssp TTCCSSSCCCCSSCEEECCTTCCCEECCT
T ss_pred CCcCcCcCCCCCCceeeecccCCCcccCC
Confidence 4679999854444 57888 99999954
No 154
>1zbd_B Rabphilin-3A; G protein, effector, RABCDR, synaptic exocytosis, RAB protein, RAB3A; HET: GTP; 2.60A {Rattus norvegicus} SCOP: g.50.1.1
Probab=27.18 E-value=16 Score=29.09 Aligned_cols=29 Identities=28% Similarity=0.649 Sum_probs=19.7
Q ss_pred CCccccccCCCCC---C--CeEcCCCCccChhHH
Q 018471 297 GVSKCTLCLSNRQ---D--PTATPCGHVFCWNCI 325 (355)
Q Consensus 297 ~~~~C~iC~~~~~---~--p~~~~CgH~fC~~Ci 325 (355)
+...|.+|...+. + ..+..|.|.+|..|-
T Consensus 54 ~~~~C~~C~~~~g~l~~~g~~C~~C~~~VC~~C~ 87 (134)
T 1zbd_B 54 GVNRCILCGEQLGMLGSASVVCEDCKKNVCTKCG 87 (134)
T ss_dssp SSSBCSSSCCBCSTTSCCEEECTTTCCEEETTSE
T ss_pred CCccccccCCCcccccCCCCCCCCCCcccccccC
Confidence 4578999998773 1 134567777777774
No 155
>2egq_A FHL1 protein; LIM domain, four and A half LIM domains protein 1, skeletal muscle LIM- protein 1, SLIM 1, structural genomics NPPSFA; NMR {Homo sapiens}
Probab=26.34 E-value=40 Score=23.23 Aligned_cols=39 Identities=18% Similarity=0.409 Sum_probs=23.9
Q ss_pred ccccccCCCCCC-----CeEcCCCCccChhHHHHHHhcCCCCCCCCCCCCCC
Q 018471 299 SKCTLCLSNRQD-----PTATPCGHVFCWNCIMEWCNEKPECPLCRAPITHS 345 (355)
Q Consensus 299 ~~C~iC~~~~~~-----p~~~~CgH~fC~~Ci~~~~~~~~~CP~Cr~~~~~~ 345 (355)
..|+.|.+.+.. .....-+..|+..| +.|..|+.++...
T Consensus 16 ~~C~~C~~~I~~~g~~~~~~~a~~~~~H~~C--------F~C~~C~~~L~~~ 59 (77)
T 2egq_A 16 KKCAGCKNPITGFGKGSSVVAYEGQSWHDYC--------FHCKKCSVNLANK 59 (77)
T ss_dssp CCCSSSCCCCCCCSSCCCEEEETTEEEETTT--------CBCSSSCCBCTTS
T ss_pred ccCcccCCcccCCCCCceeEEECcceeCccc--------CEehhcCCCCCCC
Confidence 467777776663 34444555566555 5677777776543
No 156
>2lcq_A Putative toxin VAPC6; PIN domain, Zn ribbon domain, ribosome biogenesis, metal BIN protein; NMR {Pyrococcus horikoshii}
Probab=25.96 E-value=19 Score=29.51 Aligned_cols=10 Identities=30% Similarity=0.856 Sum_probs=7.2
Q ss_pred CCCCCCCCCC
Q 018471 333 PECPLCRAPI 342 (355)
Q Consensus 333 ~~CP~Cr~~~ 342 (355)
..||.|+.++
T Consensus 149 ~~Cp~CG~~~ 158 (165)
T 2lcq_A 149 GVCPDCGSKV 158 (165)
T ss_dssp GBCTTTCCBE
T ss_pred CcCCCCCCcc
Confidence 4788887764
No 157
>2ehe_A Four and A half LIM domains 3; FHL-3, skeletal muscle LIM- protein 2, SLIM 2, FHL3, SLIM2, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=25.49 E-value=60 Score=22.61 Aligned_cols=37 Identities=16% Similarity=0.312 Sum_probs=18.1
Q ss_pred cccccCCCCC--CCeEcCCCCccChhHHHHHHhcCCCCCCCCCCCCC
Q 018471 300 KCTLCLSNRQ--DPTATPCGHVFCWNCIMEWCNEKPECPLCRAPITH 344 (355)
Q Consensus 300 ~C~iC~~~~~--~p~~~~CgH~fC~~Ci~~~~~~~~~CP~Cr~~~~~ 344 (355)
.|..|...+. ..+...-+..|+..| +.|..|+.++..
T Consensus 17 ~C~~C~~~I~~~~~~~~a~~~~~H~~C--------F~C~~C~~~L~~ 55 (82)
T 2ehe_A 17 TCAECQQLIGHDSRELFYEDRHFHEGC--------FRCCRCQRSLAD 55 (82)
T ss_dssp BCTTTCCBCCSSCCBCCCSSCCCBTTT--------SBCTTTCCBCSS
T ss_pred cCccCCCccccCcEEEEeCCccccccC--------CeecCCCCccCC
Confidence 5666665554 222223344444444 445566555543
No 158
>2ysm_A Myeloid/lymphoid or mixed-lineage leukemia protein 3 homolog; PHD domain, histone-lysine N-methyltransferase, H3 lysine-4 specific MLL3; NMR {Homo sapiens}
Probab=25.48 E-value=23 Score=26.90 Aligned_cols=34 Identities=21% Similarity=0.344 Sum_probs=23.3
Q ss_pred CCCccccccCCCCCC---CeEcCCCCccChhHHHHHH
Q 018471 296 PGVSKCTLCLSNRQD---PTATPCGHVFCWNCIMEWC 329 (355)
Q Consensus 296 ~~~~~C~iC~~~~~~---p~~~~CgH~fC~~Ci~~~~ 329 (355)
.++..|.+|.+.-.. -....|+..|+..|+....
T Consensus 5 ~~~~~C~~C~~~g~~~~ll~C~~C~~~~H~~Cl~~~~ 41 (111)
T 2ysm_A 5 SSGANCAVCDSPGDLLDQFFCTTCGQHYHGMCLDIAV 41 (111)
T ss_dssp CCCSCBTTTCCCCCTTTSEECSSSCCEECTTTTTCCC
T ss_pred CCCCCCcCCCCCCCCcCCeECCCCCCCcChHHhCCcc
Confidence 356789999765332 2345788899999986544
No 159
>2yt5_A Metal-response element-binding transcription factor 2; zinc-regulated factor 1, ZIRF1, metal-response element DNA-binding protein M96; NMR {Mus musculus}
Probab=25.37 E-value=7.8 Score=26.59 Aligned_cols=48 Identities=23% Similarity=0.443 Sum_probs=30.0
Q ss_pred CCCccccccCCCCC---CCe--EcCCCCccChhHHHHHH-------hcCCCCCCCCCCCC
Q 018471 296 PGVSKCTLCLSNRQ---DPT--ATPCGHVFCWNCIMEWC-------NEKPECPLCRAPIT 343 (355)
Q Consensus 296 ~~~~~C~iC~~~~~---~p~--~~~CgH~fC~~Ci~~~~-------~~~~~CP~Cr~~~~ 343 (355)
.++..|.+|..... +.. .-.|...|+..|+..-+ .....|+.|.....
T Consensus 4 ~~~~~C~vC~~~~~~~~~~ll~Cd~C~~~~H~~C~~p~l~~~~~~p~~~W~C~~C~~~~~ 63 (66)
T 2yt5_A 4 GSSGVCTICQEEYSEAPNEMVICDKCGQGYHQLCHTPHIDSSVIDSDEKWLCRQCVFATT 63 (66)
T ss_dssp CCCCCBSSSCCCCCBTTBCEEECSSSCCEEETTTSSSCCCHHHHHSSCCCCCHHHHHTTS
T ss_pred CCCCCCCCCCCCCCCCCCCEEECCCCChHHHhhhCCCcccccccCCCCCEECCCCcCccc
Confidence 35678999987532 222 23788889999986422 13357888865443
No 160
>2l3k_A Rhombotin-2, linker, LIM domain-binding protein 1; LMO2(LIM2)-LDB1(LID), chimera, fusion protein, oncoprotein; NMR {Mus musculus} PDB: 2l6y_B 2l6z_C
Probab=25.14 E-value=52 Score=25.20 Aligned_cols=50 Identities=16% Similarity=0.198 Sum_probs=33.2
Q ss_pred CCCccccccCCCCC--CCeEcCCCCccChhHHHHHHhcCCCCCCCCCCCCCCCc
Q 018471 296 PGVSKCTLCLSNRQ--DPTATPCGHVFCWNCIMEWCNEKPECPLCRAPITHSSL 347 (355)
Q Consensus 296 ~~~~~C~iC~~~~~--~p~~~~CgH~fC~~Ci~~~~~~~~~CP~Cr~~~~~~~~ 347 (355)
..-+.|..|...+. ......-|.+||..|...... +.|..|.......++
T Consensus 34 ~~CF~C~~C~~~L~~g~~f~~~~g~~yC~~cy~~~~~--~~~~~~~~~~~~~~~ 85 (123)
T 2l3k_A 34 LECFKCAACQKHFSVGDRYLLINSDIVCEQDIYEWTK--INGGSGGSGGSGGDV 85 (123)
T ss_dssp TTTCBCTTTCCBCCTTCEEEECSSSEEEGGGHHHHHH--HHTCCCCCCSCCSCC
T ss_pred cccCccccCCCCCCCCCcEEeeCCEEEcHHHhHHHhc--cccCCCCCCCccCCC
Confidence 35788999988873 235556788999999876653 446666555444443
No 161
>2jrp_A Putative cytoplasmic protein; two-zinc binding protein, structural genomics, PSI-2, protein structure initiative; NMR {Salmonella typhimurium LT2}
Probab=24.80 E-value=3.8 Score=29.87 Aligned_cols=17 Identities=12% Similarity=0.085 Sum_probs=9.7
Q ss_pred CCCCCCCCCCCCCCCce
Q 018471 332 KPECPLCRAPITHSSLV 348 (355)
Q Consensus 332 ~~~CP~Cr~~~~~~~~~ 348 (355)
..-|+.|..-+..+.++
T Consensus 51 ~yFC~~C~~LiSkkrv~ 67 (81)
T 2jrp_A 51 DYFCQNGHGLISKKRVN 67 (81)
T ss_dssp EECCTTTTCCCCTTSSE
T ss_pred CeeeccCCCEeecceEE
Confidence 34566666666655554
No 162
>2a20_A Regulating synaptic membrane exocytosis protein 2; zinc-finger domain, metal binding protein; NMR {Rattus norvegicus} PDB: 2cjs_C
Probab=24.60 E-value=18 Score=24.57 Aligned_cols=38 Identities=26% Similarity=0.722 Sum_probs=23.5
Q ss_pred CCCccccccCCCCCCCeEcCCCCccChhHHHHHHhcCCCCCCCCCCCC
Q 018471 296 PGVSKCTLCLSNRQDPTATPCGHVFCWNCIMEWCNEKPECPLCRAPIT 343 (355)
Q Consensus 296 ~~~~~C~iC~~~~~~p~~~~CgH~fC~~Ci~~~~~~~~~CP~Cr~~~~ 343 (355)
.+...|.||... ..+-.|||. |.+| ....|..|...++
T Consensus 7 ~d~~~C~iC~KT---KFADG~Gh~-C~yC------k~r~CaRCGg~v~ 44 (62)
T 2a20_A 7 GDAPTCGICHKT---KFADGCGHN-CSYC------QTKFCARCGGRVS 44 (62)
T ss_dssp SCCCCCSSSSCS---CCCSSCCEE-BTTT------CCEECTTSEEEEE
T ss_pred CCcchhhhhccc---eeccCCCcc-cccc------CCeeecccCCEee
Confidence 346789999874 233468884 5556 3356777755443
No 163
>1weu_A Inhibitor of growth family, member 4; structural genomics, PHD domain, ING1-like protein, DNA binding protein, NPPSFA; NMR {Mus musculus} SCOP: g.50.1.2
Probab=24.00 E-value=1.7e+02 Score=21.40 Aligned_cols=43 Identities=23% Similarity=0.474 Sum_probs=26.3
Q ss_pred CCccccccCCCCCCCeEc---C--CC-CccChhHHHHHHh----cCCCCCCCCCCCC
Q 018471 297 GVSKCTLCLSNRQDPTAT---P--CG-HVFCWNCIMEWCN----EKPECPLCRAPIT 343 (355)
Q Consensus 297 ~~~~C~iC~~~~~~p~~~---~--Cg-H~fC~~Ci~~~~~----~~~~CP~Cr~~~~ 343 (355)
+..-| +|..... ...+ . |. .-|+..|+. +. .+..||.|+..-.
T Consensus 35 e~~yC-iC~~~~~-g~MI~CD~~dC~~~WfH~~CVg--l~~~p~g~W~Cp~C~~~~~ 87 (91)
T 1weu_A 35 EPTYC-LCHQVSY-GEMIGCDNPDCSIEWFHFACVG--LTTKPRGKWFCPRCSQESG 87 (91)
T ss_dssp CCBCS-TTCCBCC-SCCCCCSCSSCSCCCCCSTTTT--CSSCCCSSCCCTTTCCCCS
T ss_pred CCcEE-ECCCCCC-CCEeEecCCCCCCCCEecccCC--cCcCCCCCEECcCccCcCC
Confidence 45566 8987433 2233 3 54 458889985 22 3468999976543
No 164
>1wg2_A Zinc finger (AN1-like) family protein; riken structural genomics/proteomics initiative, RSGI, structural genomics, DNA binding protein; NMR {Arabidopsis thaliana} SCOP: g.80.1.1
Probab=23.80 E-value=99 Score=21.22 Aligned_cols=28 Identities=21% Similarity=0.444 Sum_probs=19.8
Q ss_pred CCccccccCCCCCC-CeEcCCCCccChhH
Q 018471 297 GVSKCTLCLSNRQD-PTATPCGHVFCWNC 324 (355)
Q Consensus 297 ~~~~C~iC~~~~~~-p~~~~CgH~fC~~C 324 (355)
....|..|.....- +..=.||.+||..-
T Consensus 14 ~~~rC~~C~kkvgl~~f~CrCg~~FC~~H 42 (64)
T 1wg2_A 14 PNNRCFSCNKKVGVMGFKCKCGSTFCGSH 42 (64)
T ss_dssp CSCSCTTTCCCCTTSCEECTTSCEECSSS
T ss_pred cCCcChhhCCcccccCeEeecCCEecccC
Confidence 46799999886443 34337999999743
No 165
>2zet_C Melanophilin; complex, GTP-binding protein, GTPase, G-protein, RAB, RAB27B, effector, SLP homology domain, acetylation, lipoprotein, membrane; HET: GTP; 3.00A {Mus musculus}
Probab=23.70 E-value=26 Score=28.58 Aligned_cols=29 Identities=21% Similarity=0.619 Sum_probs=21.8
Q ss_pred CCccccccCCCCC---C--CeEcCCCCccChhHH
Q 018471 297 GVSKCTLCLSNRQ---D--PTATPCGHVFCWNCI 325 (355)
Q Consensus 297 ~~~~C~iC~~~~~---~--p~~~~CgH~fC~~Ci 325 (355)
++..|.+|..++. + ..+..|.|.+|..|-
T Consensus 67 ~~~~C~~C~~~fg~l~~~g~~C~~C~~~VC~~C~ 100 (153)
T 2zet_C 67 NETHCARCLQPYRLLLNSRRQCLECSLFVCKSCS 100 (153)
T ss_dssp GGTBCTTTCCBGGGCSSCCEECTTTCCEECGGGE
T ss_pred CCccchhhcCccccccCCCCcCCCCCchhhcccc
Confidence 4689999998753 2 345679999998885
No 166
>2iyb_E Testin, TESS, TES; LIM domain, SH3-binding, tumour supressor LIM domain EVH1 DO cell motility, phosphorylation, cytoskeleton; 2.35A {Homo sapiens}
Probab=23.70 E-value=32 Score=23.00 Aligned_cols=10 Identities=20% Similarity=0.404 Sum_probs=4.3
Q ss_pred ccccccCCCC
Q 018471 299 SKCTLCLSNR 308 (355)
Q Consensus 299 ~~C~iC~~~~ 308 (355)
+.|..|...+
T Consensus 33 F~C~~C~~~L 42 (65)
T 2iyb_E 33 FLCSCCSKCL 42 (65)
T ss_dssp SBCTTTCCBC
T ss_pred EECCCCCCcC
Confidence 4444444433
No 167
>2l4z_A DNA endonuclease RBBP8, LIM domain transcription LMO4; protein-protein interaction, LIM-interaction DOM LMO4, RBBP8/CTIP, LIM-only protein; HET: DNA; NMR {Homo sapiens}
Probab=23.32 E-value=87 Score=24.10 Aligned_cols=39 Identities=18% Similarity=0.404 Sum_probs=28.5
Q ss_pred CCccccccCCCCCCCe-EcCCCCccChhHHHHHHhcCCCCCCCCCCCC
Q 018471 297 GVSKCTLCLSNRQDPT-ATPCGHVFCWNCIMEWCNEKPECPLCRAPIT 343 (355)
Q Consensus 297 ~~~~C~iC~~~~~~p~-~~~CgH~fC~~Ci~~~~~~~~~CP~Cr~~~~ 343 (355)
....|..|...+.... ...-|..|+..| +.|-.|+.++.
T Consensus 60 ~~~~C~~C~~~I~~~~~v~a~~~~wH~~C--------F~C~~C~~~L~ 99 (123)
T 2l4z_A 60 SWKRCAGCGGKIADRFLLYAMDSYWHSRC--------LKCSSCQAQLG 99 (123)
T ss_dssp SCSBBSSSSSBCCSSSEEEETTEEEETTT--------SBCTTTCCBGG
T ss_pred cCCcCcCCCCCcCCcEEEEeCCcEEcccc--------cCcCcCCCccc
Confidence 3568999998877653 455666677777 67888888775
No 168
>1iml_A CRIP, cysteine rich intestinal protein; metal-binding protein, LIM domain protein; NMR {Rattus rattus} SCOP: g.39.1.3 g.39.1.3
Probab=23.27 E-value=37 Score=23.42 Aligned_cols=45 Identities=18% Similarity=0.184 Sum_probs=32.1
Q ss_pred CCCccccccCCCCCC-CeEcCCCCccCh-hHHHHHHhcCCCCCCCCCCC
Q 018471 296 PGVSKCTLCLSNRQD-PTATPCGHVFCW-NCIMEWCNEKPECPLCRAPI 342 (355)
Q Consensus 296 ~~~~~C~iC~~~~~~-p~~~~CgH~fC~-~Ci~~~~~~~~~CP~Cr~~~ 342 (355)
.+-+.|..|...+.. +....=|.+||. .|.... ..+.|..|....
T Consensus 25 ~~CF~C~~C~~~L~~~~~~~~~g~~yC~~~cy~~~--f~~~C~~C~~~~ 71 (76)
T 1iml_A 25 RPCLKCEKCGKTLTSGGHAEHEGKPYCNHPCYSAM--FGPKGFGRGGAE 71 (76)
T ss_dssp TTTCBCTTTCCBCCTTTEEEETTEEEETTTHHHHH--SSCCCSSCCCSS
T ss_pred CCCCCccccCccCCCCceECcCCeEeeCHHHHHHH--hCccCCCcCCce
Confidence 356889999887765 445567788999 698653 456788886543
No 169
>1wen_A Inhibitor of growth family, member 4; ING1-like protein; structural genomics, PHD domain, riken structural genomics/proteomics initiative, RSGI; NMR {Mus musculus} SCOP: g.50.1.2 PDB: 1wes_A
Probab=23.22 E-value=1.2e+02 Score=21.08 Aligned_cols=43 Identities=23% Similarity=0.474 Sum_probs=26.7
Q ss_pred CCccccccCCCCCCCeEc---C--CC-CccChhHHHHHHh----cCCCCCCCCCCCC
Q 018471 297 GVSKCTLCLSNRQDPTAT---P--CG-HVFCWNCIMEWCN----EKPECPLCRAPIT 343 (355)
Q Consensus 297 ~~~~C~iC~~~~~~p~~~---~--Cg-H~fC~~Ci~~~~~----~~~~CP~Cr~~~~ 343 (355)
+..-| +|..... ...+ . |. .-|+..|+. +. .+..||.|...-.
T Consensus 15 ~~~~C-~C~~~~~-g~MI~CD~~~C~~~wfH~~Cvg--l~~~p~g~w~Cp~C~~~~~ 67 (71)
T 1wen_A 15 EPTYC-LCHQVSY-GEMIGCDNPDCSIEWFHFACVG--LTTKPRGKWFCPRCSQESG 67 (71)
T ss_dssp SCCCS-TTCCCSC-SSEECCSCSSCSCCCEETTTTT--CSSCCSSCCCCTTTSSCSS
T ss_pred CCCEE-ECCCCCC-CCEeEeeCCCCCCccEecccCC--cCcCCCCCEECCCCCcccc
Confidence 45667 7987533 2333 3 54 468889986 32 3358999976543
No 170
>2g45_A Ubiquitin carboxyl-terminal hydrolase 5; zinc finger, hydrolase; 1.99A {Homo sapiens} SCOP: g.44.1.5 PDB: 2g43_A 2l80_A
Probab=23.16 E-value=42 Score=26.52 Aligned_cols=26 Identities=19% Similarity=0.249 Sum_probs=20.0
Q ss_pred CccccccCCCCCCCeEcCCCCccChh
Q 018471 298 VSKCTLCLSNRQDPTATPCGHVFCWN 323 (355)
Q Consensus 298 ~~~C~iC~~~~~~p~~~~CgH~fC~~ 323 (355)
...|..|...-..-.++.|||+.|..
T Consensus 34 ~~~C~~C~~~~~LwlCL~CG~vgCgr 59 (129)
T 2g45_A 34 GWKCSKCDMRENLWLNLTDGSILCGR 59 (129)
T ss_dssp BCCCSSSSCCSSEEEETTTCCEEECC
T ss_pred CCcCccccCcCceEEeccCCccccCc
Confidence 45799998765556789999998843
No 171
>1x4w_A Hypothetical protein FLJ13222; ZF-AN1 domain, zinc binding, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=21.04 E-value=48 Score=23.04 Aligned_cols=29 Identities=24% Similarity=0.518 Sum_probs=20.1
Q ss_pred CCCccccccCCCCCCC----eEcCCCCccChhH
Q 018471 296 PGVSKCTLCLSNRQDP----TATPCGHVFCWNC 324 (355)
Q Consensus 296 ~~~~~C~iC~~~~~~p----~~~~CgH~fC~~C 324 (355)
.....|..|.....-+ ..=.||.+||..-
T Consensus 13 ~~~~rC~~C~kk~gL~~~egf~CrCg~~FC~~H 45 (67)
T 1x4w_A 13 KSRRRCFQCQTKLELVQQELGSCRCGYVFCMLH 45 (67)
T ss_dssp SCTTBCSSSCCBCCHHHHHHHCCSSSCCCCTTT
T ss_pred ccCCcchhhCCeecccccCceEecCCCEehhcc
Confidence 3467999998876544 2227999999743
No 172
>3pwf_A Rubrerythrin; non heme iron peroxidases, oxidative stress, oxidoreductase; 1.64A {Pyrococcus furiosus} PDB: 3mps_A 3pza_A 3qvd_A 1nnq_A 2hr5_A
Probab=20.82 E-value=30 Score=28.67 Aligned_cols=8 Identities=63% Similarity=1.609 Sum_probs=6.3
Q ss_pred CCCCCCCC
Q 018471 334 ECPLCRAP 341 (355)
Q Consensus 334 ~CP~Cr~~ 341 (355)
.||.|..+
T Consensus 155 ~CP~Cg~~ 162 (170)
T 3pwf_A 155 YCPVCGAP 162 (170)
T ss_dssp BCTTTCCB
T ss_pred CCCCCCCC
Confidence 79999754
Done!