BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 018472
(355 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|1DKR|A Chain A, Crystal Structures Of Bacillus Subtilis
Phosphoribosylpyrophosphate Synthetase: Molecular Basis
Of Allosteric Inhibition And Activation.
pdb|1DKR|B Chain B, Crystal Structures Of Bacillus Subtilis
Phosphoribosylpyrophosphate Synthetase: Molecular Basis
Of Allosteric Inhibition And Activation.
pdb|1DKU|A Chain A, Crystal Structures Of Bacillus Subtilis
Phosphoribosylpyrophosphate Synthetase: Molecular Basis
Of Allosteric Inhibition And Activation.
pdb|1DKU|B Chain B, Crystal Structures Of Bacillus Subtilis
Phosphoribosylpyrophosphate Synthetase: Molecular Basis
Of Allosteric Inhibition And Activation.
pdb|1IBS|A Chain A, Phosphoribosyldiphosphate Synthetase In Complex With
Cadmium Ions
pdb|1IBS|B Chain B, Phosphoribosyldiphosphate Synthetase In Complex With
Cadmium Ions
Length = 317
Score = 301 bits (770), Expect = 5e-82, Method: Compositional matrix adjust.
Identities = 141/258 (54%), Positives = 192/258 (74%), Gaps = 3/258 (1%)
Query: 92 NRTTNNRIKLFSGTANPALSQEIACYMGVELGKINIKRFADGEIYVQLQESVRGCDVYLV 151
N+ + +K+FS +NP L++EIA +GV+LGK ++ RF+DGE+ + ++ES+RGCD Y++
Sbjct: 3 NQYGDKNLKIFSLNSNPELAKEIADIVGVQLGKCSVTRFSDGEVQINIEESIRGCDCYII 62
Query: 152 QPTCPPANENLMELLIMIDACRRASAKNITAVIPYFGYARADRKTQGRESIAAKLVANLI 211
Q T P NE++MELLIM+DA +RASAK I VIPY+GYAR DRK + RE I AKL ANL+
Sbjct: 63 QSTSDPVNEHIMELLIMVDALKRASAKTINIVIPYYGYARQDRKARSREPITAKLFANLL 122
Query: 212 TEAGADRVLACDLHSGQSMGYFDIPVDHVYCQPVILDYLASKTVSSNDLVVVSPDVGGVA 271
AGA RV+A DLH+ Q G+FDIP+DH+ P++ +Y K + D+V+VSPD GGV
Sbjct: 123 ETAGATRVIALDLHAPQIQGFFDIPIDHLMGVPILGEYFEGKNLE--DIVIVSPDHGGVT 180
Query: 272 RARAFAKKLSDAPLAIVDKRRHGHNVAEVMNLIGDVKGKVAVMVDDMIDTAGTIAKGAAL 331
RAR A +L AP+AI+DKRR NVAEVMN++G+++GK A+++DD+IDTAGTI A
Sbjct: 181 RARKLADRLK-APIAIIDKRRPRPNVAEVMNIVGNIEGKTAILIDDIIDTAGTITLAANA 239
Query: 332 LHQEGAREVYACCTHAVF 349
L + GA+EVYACCTH V
Sbjct: 240 LVENGAKEVYACCTHPVL 257
>pdb|3DAH|A Chain A, 2.3 A Crystal Structure Of Ribose-Phosphate
Pyrophosphokinase From Burkholderia Pseudomallei
pdb|3DAH|B Chain B, 2.3 A Crystal Structure Of Ribose-Phosphate
Pyrophosphokinase From Burkholderia Pseudomallei
pdb|3DAH|C Chain C, 2.3 A Crystal Structure Of Ribose-Phosphate
Pyrophosphokinase From Burkholderia Pseudomallei
Length = 319
Score = 287 bits (734), Expect = 8e-78, Method: Compositional matrix adjust.
Identities = 138/257 (53%), Positives = 195/257 (75%), Gaps = 4/257 (1%)
Query: 94 TTNNRIKLFSGTANPALSQEIACYMGVELGKINIKRFADGEIYVQLQESVRGCDVYLVQP 153
++++ + +F+G ANPAL+QE+ +G+ LGK + RF+DGEI V++QE+VRG DV+++Q
Sbjct: 3 SSHDGLMVFTGNANPALAQEVVKILGIPLGKAMVSRFSDGEIQVEIQENVRGKDVFVLQS 62
Query: 154 TCPPANENLMELLIMIDACRRASAKNITAVIPYFGYARADRKTQ-GRESIAAKLVANLIT 212
TC P N+NLMEL+IM+DA +RASA ITA IPYFGYAR DR+ + R +I+AK+VAN++
Sbjct: 63 TCAPTNDNLMELMIMVDALKRASAGRITAAIPYFGYARQDRRPRSARVAISAKVVANMLE 122
Query: 213 EAGADRVLACDLHSGQSMGYFDIPVDHVYCQPVILDYLASKTVSSNDLVVVSPDVGGVAR 272
AG +R++ DLH+ Q G+FDIPVD++Y P++L L + DL+VVSPDVGGV R
Sbjct: 123 IAGVERIITMDLHADQIQGFFDIPVDNIYATPILLGDLRKQNYP--DLLVVSPDVGGVVR 180
Query: 273 ARAFAKKLSDAPLAIVDKRRHGHNVAEVMNLIGDVKGKVAVMVDDMIDTAGTIAKGAALL 332
ARA AK+L + LAI+DKRR NVAEVMN+IG+V+G+ V++DDM+DTAGT+ K A +L
Sbjct: 181 ARALAKQL-NCDLAIIDKRRPKANVAEVMNIIGEVEGRTCVIMDDMVDTAGTLCKAAQVL 239
Query: 333 HQEGAREVYACCTHAVF 349
+ GA++V+A TH V
Sbjct: 240 KERGAKQVFAYATHPVL 256
>pdb|2H07|A Chain A, Crystal Structure Of Human Phosphoribosyl Pyrophosphate
Synthetase 1 Mutant S132a
pdb|2H07|B Chain B, Crystal Structure Of Human Phosphoribosyl Pyrophosphate
Synthetase 1 Mutant S132a
Length = 326
Score = 244 bits (623), Expect = 5e-65, Method: Compositional matrix adjust.
Identities = 122/251 (48%), Positives = 169/251 (67%), Gaps = 1/251 (0%)
Query: 99 IKLFSGTANPALSQEIACYMGVELGKINIKRFADGEIYVQLQESVRGCDVYLVQPTCPPA 158
IK+FSG+++ LSQ+IA +G+ELGK+ K+F++ E V++ ESVRG DVY+VQ C
Sbjct: 4 IKIFSGSSHQDLSQKIADRLGLELGKVVTKKFSNQETCVEIGESVRGEDVYIVQSGCGEI 63
Query: 159 NENLMELLIMIDACRRASAKNITAVIPYFGYARADRKTQGRESIAAKLVANLITEAGADR 218
N+NLMELLIMI+AC+ ASA +TAVIP F YAR D+K + R I+AKLVAN+++ AGAD
Sbjct: 64 NDNLMELLIMINACKIASASRVTAVIPCFPYARQDKKDKSRAPISAKLVANMLSVAGADH 123
Query: 219 VLACDLHSGQSMGYFDIPVDHVYCQPVILDYLASKTVSSNDLVVVSPDVGGVARARAFAK 278
++ DLH+ Q G+FDIPVD++Y +P +L ++ + +VSPD GG R + A
Sbjct: 124 IITMDLHAAQIQGFFDIPVDNLYAEPAVLKWIRENISEWRNCTIVSPDAGGAKRVTSIAD 183
Query: 279 KLSDAPLAIVDKRRHGHNVAEVMNLIGDVKGKVAVMVDDMIDTAGTIAKGAALLHQEGAR 338
+L + A++ K R N + M L+GDVK +VA++VDDM DT GTI A L GA
Sbjct: 184 RL-NVDFALIHKERKKANEVDRMVLVGDVKDRVAILVDDMADTCGTICHAADKLLSAGAT 242
Query: 339 EVYACCTHAVF 349
VYA TH +F
Sbjct: 243 RVYAILTHGIF 253
>pdb|2H06|A Chain A, Crystal Structure Of Human Phosphoribosyl Pyrophosphate
Synthetase 1
pdb|2H06|B Chain B, Crystal Structure Of Human Phosphoribosyl Pyrophosphate
Synthetase 1
pdb|2HCR|A Chain A, Crystal Structure Of Human Phosphoribosyl Pyrophosphate
Synthetase 1 In Complex With Amp(Atp), Cadmium And
Sulfate Ion
pdb|2HCR|B Chain B, Crystal Structure Of Human Phosphoribosyl Pyrophosphate
Synthetase 1 In Complex With Amp(Atp), Cadmium And
Sulfate Ion
pdb|3EFH|A Chain A, Crystal Structure Of Human Phosphoribosyl Pyrophosphate
Synthetase 1
pdb|3EFH|B Chain B, Crystal Structure Of Human Phosphoribosyl Pyrophosphate
Synthetase 1
pdb|3S5J|B Chain B, 2.0a Crystal Structure Of Human Phosphoribosyl
Pyrophosphate Synthetase 1
pdb|3S5J|A Chain A, 2.0a Crystal Structure Of Human Phosphoribosyl
Pyrophosphate Synthetase 1
Length = 326
Score = 244 bits (623), Expect = 5e-65, Method: Compositional matrix adjust.
Identities = 122/251 (48%), Positives = 169/251 (67%), Gaps = 1/251 (0%)
Query: 99 IKLFSGTANPALSQEIACYMGVELGKINIKRFADGEIYVQLQESVRGCDVYLVQPTCPPA 158
IK+FSG+++ LSQ+IA +G+ELGK+ K+F++ E V++ ESVRG DVY+VQ C
Sbjct: 4 IKIFSGSSHQDLSQKIADRLGLELGKVVTKKFSNQETCVEIGESVRGEDVYIVQSGCGEI 63
Query: 159 NENLMELLIMIDACRRASAKNITAVIPYFGYARADRKTQGRESIAAKLVANLITEAGADR 218
N+NLMELLIMI+AC+ ASA +TAVIP F YAR D+K + R I+AKLVAN+++ AGAD
Sbjct: 64 NDNLMELLIMINACKIASASRVTAVIPCFPYARQDKKDKSRAPISAKLVANMLSVAGADH 123
Query: 219 VLACDLHSGQSMGYFDIPVDHVYCQPVILDYLASKTVSSNDLVVVSPDVGGVARARAFAK 278
++ DLH+ Q G+FDIPVD++Y +P +L ++ + +VSPD GG R + A
Sbjct: 124 IITMDLHASQIQGFFDIPVDNLYAEPAVLKWIRENISEWRNCTIVSPDAGGAKRVTSIAD 183
Query: 279 KLSDAPLAIVDKRRHGHNVAEVMNLIGDVKGKVAVMVDDMIDTAGTIAKGAALLHQEGAR 338
+L + A++ K R N + M L+GDVK +VA++VDDM DT GTI A L GA
Sbjct: 184 RL-NVDFALIHKERKKANEVDRMVLVGDVKDRVAILVDDMADTCGTICHAADKLLSAGAT 242
Query: 339 EVYACCTHAVF 349
VYA TH +F
Sbjct: 243 RVYAILTHGIF 253
>pdb|2H08|A Chain A, Crystal Structure Of Human Phosphoribosyl Pyrophosphate
Synthetase 1 Mutant Y146m
pdb|2H08|B Chain B, Crystal Structure Of Human Phosphoribosyl Pyrophosphate
Synthetase 1 Mutant Y146m
Length = 326
Score = 241 bits (615), Expect = 4e-64, Method: Compositional matrix adjust.
Identities = 121/251 (48%), Positives = 168/251 (66%), Gaps = 1/251 (0%)
Query: 99 IKLFSGTANPALSQEIACYMGVELGKINIKRFADGEIYVQLQESVRGCDVYLVQPTCPPA 158
IK+FSG+++ LSQ+IA +G+ELGK+ K+F++ E V++ ESVRG DVY+VQ C
Sbjct: 4 IKIFSGSSHQDLSQKIADRLGLELGKVVTKKFSNQETCVEIGESVRGEDVYIVQSGCGEI 63
Query: 159 NENLMELLIMIDACRRASAKNITAVIPYFGYARADRKTQGRESIAAKLVANLITEAGADR 218
N+NLMELLIMI+AC+ ASA +TAVIP F YAR D+K + R I+AKLVAN+++ AGAD
Sbjct: 64 NDNLMELLIMINACKIASASRVTAVIPCFPYARQDKKDKSRAPISAKLVANMLSVAGADH 123
Query: 219 VLACDLHSGQSMGYFDIPVDHVYCQPVILDYLASKTVSSNDLVVVSPDVGGVARARAFAK 278
++ DLH+ Q G+FDIPVD++ +P +L ++ + +VSPD GG R + A
Sbjct: 124 IITMDLHASQIQGFFDIPVDNLMAEPAVLKWIRENISEWRNCTIVSPDAGGAKRVTSIAD 183
Query: 279 KLSDAPLAIVDKRRHGHNVAEVMNLIGDVKGKVAVMVDDMIDTAGTIAKGAALLHQEGAR 338
+L + A++ K R N + M L+GDVK +VA++VDDM DT GTI A L GA
Sbjct: 184 RL-NVDFALIHKERKKANEVDRMVLVGDVKDRVAILVDDMADTCGTICHAADKLLSAGAT 242
Query: 339 EVYACCTHAVF 349
VYA TH +F
Sbjct: 243 RVYAILTHGIF 253
>pdb|2JI4|A Chain A, Human Phosphoribosylpyrophosphate Synthetase - Associated
Protein 41 (Pap41)
Length = 379
Score = 147 bits (370), Expect = 1e-35, Method: Compositional matrix adjust.
Identities = 96/291 (32%), Positives = 157/291 (53%), Gaps = 34/291 (11%)
Query: 95 TNNRIKLFSGTANPA---LSQEIACYMGVELGKINIKRFADGEIYVQLQESVRGCDVYLV 151
T + LFS +N + LS++IA +GVE+GK+ + + + E VQ+QESVRG DV+++
Sbjct: 26 TKGGLVLFSANSNSSCMELSKKIAERLGVEMGKVQVYQEPNRETRVQIQESVRGKDVFII 85
Query: 152 QPTCPPANENLMELLIMIDACRRASAKNITAVIPYFGYARADRKTQGRESIAAKLVANLI 211
Q N +MELLIM+ AC+ + AK+I VIPYF Y++ K + R SI +KL+A+++
Sbjct: 86 QTVSKDVNTTIMELLIMVYACKTSCAKSIIGVIPYFPYSK-QCKMRKRGSIVSKLLASMM 144
Query: 212 TEAGADRVLACDLHSGQSMGYFDIPVDHVYCQPVILDYLASKTVSSNDLVVVSPDVGGVA 271
+AG ++ DLH + G+F+IPVD++ P +L Y+ + + V+V+
Sbjct: 145 CKAGLTHLITMDLHQKEIQGFFNIPVDNLRASPFLLQYIQEEIPDYRNAVIVAKSPASAK 204
Query: 272 RARAFAKKL-----------SDAPLAIVDKRRHGHNVAEV-------------------M 301
RA++FA++L DA +VD R V V +
Sbjct: 205 RAQSFAERLRLGIAVIHGEAQDAESDLVDGRHSPPMVRSVAAIHPSLEIPMLIPKEKPPI 264
Query: 302 NLIGDVKGKVAVMVDDMIDTAGTIAKGAALLHQEGAREVYACCTHAVFRLD 352
++GDV G++A++VDD+ID + A L + GA +++ TH + D
Sbjct: 265 TVVGDVGGRIAIIVDDIIDDVDSFLAAAETLKERGAYKIFVMATHGLLSSD 315
>pdb|2C4K|A Chain A, Crystal Structure Of Human Phosphoribosylpyrophosphate
Synthetase-Associated Protein 39 (Pap39)
pdb|2C4K|B Chain B, Crystal Structure Of Human Phosphoribosylpyrophosphate
Synthetase-Associated Protein 39 (Pap39)
pdb|2C4K|C Chain C, Crystal Structure Of Human Phosphoribosylpyrophosphate
Synthetase-Associated Protein 39 (Pap39)
pdb|2C4K|D Chain D, Crystal Structure Of Human Phosphoribosylpyrophosphate
Synthetase-Associated Protein 39 (Pap39)
pdb|2C4K|E Chain E, Crystal Structure Of Human Phosphoribosylpyrophosphate
Synthetase-Associated Protein 39 (Pap39)
pdb|2C4K|F Chain F, Crystal Structure Of Human Phosphoribosylpyrophosphate
Synthetase-Associated Protein 39 (Pap39)
Length = 370
Score = 132 bits (332), Expect = 3e-31, Method: Compositional matrix adjust.
Identities = 88/283 (31%), Positives = 150/283 (53%), Gaps = 35/283 (12%)
Query: 100 KLFSGTANPA---LSQEIACYMGVELGKINIKRFADGEIYVQLQESVRGCDVYLVQPTCP 156
++FS + A L++ I +G ELGK + + +GE V+++ESVRG D++++Q
Sbjct: 28 RVFSANSTAACTELAKRITERLGAELGKSVVYQETNGETRVEIKESVRGQDIFIIQTIPR 87
Query: 157 PANENLMELLIMIDACRRASAKNITAVIPYFGYARADRKTQGRESIAAKLVANLITEAGA 216
N +MELLIM A + A A+NI VIPYF Y++ K + R SI KL+A+++ +AG
Sbjct: 88 DVNTAVMELLIMAYALKTACARNIIGVIPYFPYSKQS-KMRKRGSIVCKLLASMLAKAGL 146
Query: 217 DRVLACDLHSGQSMGYFDIPVDHVYCQPVILDYLASKTVSSNDLVVVSPDVGGVARARAF 276
++ DLH + G+F PVD++ P +L Y+ + + + V+V+ RA+++
Sbjct: 147 THIITMDLHQKEIQGFFSFPVDNLRASPFLLQYIQEEIPNYRNAVIVAKSPDAAKRAQSY 206
Query: 277 AKKLSDAPLAIV-----------DKRRHG---------HNVAEV----------MNLIGD 306
A++L LA++ D RH H E+ + ++GD
Sbjct: 207 AERLRLG-LAVIHGEAQCTELDMDDGRHSPPMVKNATVHPGLELPLMMAKEKPPITVVGD 265
Query: 307 VKGKVAVMVDDMIDTAGTIAKGAALLHQEGAREVYACCTHAVF 349
V G++A++VDD+ID + A +L + GA ++Y TH +
Sbjct: 266 VGGRIAIIVDDIIDDVESFVAAAEILKERGAYKIYVMATHGIL 308
>pdb|3LPN|A Chain A, Crystal Structure Of The Phosphoribosylpyrophosphate
(Prpp) Synthetase From Thermoplasma Volcanium In Complex
With An Atp Analog (Ampcpp).
pdb|3LPN|B Chain B, Crystal Structure Of The Phosphoribosylpyrophosphate
(Prpp) Synthetase From Thermoplasma Volcanium In Complex
With An Atp Analog (Ampcpp).
pdb|3LRT|A Chain A, Crystal Structure Of The Phosphoribosyl Pyrophosphate
(Prpp) Synthetase From Thermoplasma Volcanium In Complex
With Adp.
pdb|3LRT|B Chain B, Crystal Structure Of The Phosphoribosyl Pyrophosphate
(Prpp) Synthetase From Thermoplasma Volcanium In Complex
With Adp.
pdb|3NAG|A Chain A, Crystal Structure Of The Phosphoribosylpyrophosphate
(Prpp) Synthetase From Thermoplasma Volcanium In Complex
With Adp
pdb|3NAG|B Chain B, Crystal Structure Of The Phosphoribosylpyrophosphate
(Prpp) Synthetase From Thermoplasma Volcanium In Complex
With Adp
Length = 286
Score = 117 bits (294), Expect = 7e-27, Method: Compositional matrix adjust.
Identities = 67/223 (30%), Positives = 121/223 (54%), Gaps = 10/223 (4%)
Query: 128 KRFADGEIYVQLQESVRGCDVYLVQPTCPPANENLMELLIMIDACRRASAKNITAVIPYF 187
+RF DGE+Y++ E + G +++++ T A +ME+++ + A + K++ + PY+
Sbjct: 30 RRFPDGELYLRYDEDLTGHNIFIIGNTHSDAE--VMEMILTLSAIQDYRTKSVNIIAPYY 87
Query: 188 GYARADRKTQGRESIAAKLVANLITEAGADRVLACDLHSGQSMGYFDIPVDHVYCQPVIL 247
GYAR ++ + E I+++++ I + ++ + D+H +++ Y + ++ I+
Sbjct: 88 GYARQHQRYKNGEPISSQILTE-IYSSYSNSIATVDIHDEKTLSYSKVKFSDLHANDAIV 146
Query: 248 DYLASKTVSSNDLVVVSPDVGGVARARAFAKKLSDAPLAIVDKRRHGHNVA-EVMNLIGD 306
Y + V VVSPD GG+AR + KL I KR V +V N+ D
Sbjct: 147 RYYKNVDVD----YVVSPDDGGLARVADISAKLGKKHFFIEKKRIDDRTVEMKVPNV--D 200
Query: 307 VKGKVAVMVDDMIDTAGTIAKGAALLHQEGAREVYACCTHAVF 349
V GK ++VDD+I T GTIAK + LL ++GA ++Y H +F
Sbjct: 201 VNGKKLLIVDDIISTGGTIAKSSGLLREKGASKIYVSAVHGLF 243
>pdb|1U9Y|A Chain A, Crystal Structure Of Phosphoribosyl Diphosphate Synthase
From Methanocaldococcus Jannaschii
pdb|1U9Y|B Chain B, Crystal Structure Of Phosphoribosyl Diphosphate Synthase
From Methanocaldococcus Jannaschii
pdb|1U9Y|C Chain C, Crystal Structure Of Phosphoribosyl Diphosphate Synthase
From Methanocaldococcus Jannaschii
pdb|1U9Y|D Chain D, Crystal Structure Of Phosphoribosyl Diphosphate Synthase
From Methanocaldococcus Jannaschii
pdb|1U9Z|A Chain A, Crystal Structure Of Phosphoribosyl Diphosphate Synthase
Complexed With Amp And Ribose 5-Phosphate
pdb|1U9Z|B Chain B, Crystal Structure Of Phosphoribosyl Diphosphate Synthase
Complexed With Amp And Ribose 5-Phosphate
pdb|1U9Z|C Chain C, Crystal Structure Of Phosphoribosyl Diphosphate Synthase
Complexed With Amp And Ribose 5-Phosphate
pdb|1U9Z|D Chain D, Crystal Structure Of Phosphoribosyl Diphosphate Synthase
Complexed With Amp And Ribose 5-Phosphate
Length = 284
Score = 117 bits (294), Expect = 8e-27, Method: Compositional matrix adjust.
Identities = 71/247 (28%), Positives = 129/247 (52%), Gaps = 6/247 (2%)
Query: 103 SGTANPALSQEIACYMGVELGKINIKRFADGEIYVQLQESVRGCDVYLVQPTCPPANENL 162
SG+ + L+ ++A + +L ++ KRF D EIYV++ + + + ++ T N+ +
Sbjct: 5 SGSQSQNLAFKVAKLLNTKLTRVEYKRFPDNEIYVRIVDEINDDEAVIIN-TQKNQNDAI 63
Query: 163 MELLIMIDACRRASAKNITAVIPYFGYARADRKTQGRESIAAKLVANLITEAGADRVLAC 222
+E +++ DA R K IT V PY YAR D+K E+I+ + +A + + D+++
Sbjct: 64 VETILLCDALRDEGVKKITLVAPYLAYARQDKKFNPGEAISIRALAKIYSNI-VDKLITI 122
Query: 223 DLHSGQSMGYFDIPVDHVYCQPVILDYLASKTVSSNDLVVVSPDVGGVARARAFAKKLSD 282
+ H +F IP + P + +Y+ K ND +V++PD G + A+ A K+ +
Sbjct: 123 NPHETHIKDFFTIPFIYGDAVPKLAEYVKDKL---NDPIVLAPDKGALEFAKT-ASKILN 178
Query: 283 APLAIVDKRRHGHNVAEVMNLIGDVKGKVAVMVDDMIDTAGTIAKGAALLHQEGAREVYA 342
A ++K R ++ D K + +VDD+I T GT+A LL ++GA+++ A
Sbjct: 179 AEYDYLEKTRLSPTEIQIAPKTLDAKDRDVFIVDDIISTGGTMATAVKLLKEQGAKKIIA 238
Query: 343 CCTHAVF 349
C H V
Sbjct: 239 ACVHPVL 245
>pdb|3MBI|A Chain A, Crystal Structure Of The Phosphoribosylpyrophosphate
(Prpp) Synthetase From Thermoplasma Volcanium In Complex
With Adp-Mg2+ And Ribose 5- Phosphate
pdb|3MBI|B Chain B, Crystal Structure Of The Phosphoribosylpyrophosphate
(Prpp) Synthetase From Thermoplasma Volcanium In Complex
With Adp-Mg2+ And Ribose 5- Phosphate
pdb|3MBI|C Chain C, Crystal Structure Of The Phosphoribosylpyrophosphate
(Prpp) Synthetase From Thermoplasma Volcanium In Complex
With Adp-Mg2+ And Ribose 5- Phosphate
pdb|3MBI|D Chain D, Crystal Structure Of The Phosphoribosylpyrophosphate
(Prpp) Synthetase From Thermoplasma Volcanium In Complex
With Adp-Mg2+ And Ribose 5- Phosphate
Length = 287
Score = 117 bits (294), Expect = 8e-27, Method: Compositional matrix adjust.
Identities = 67/223 (30%), Positives = 121/223 (54%), Gaps = 10/223 (4%)
Query: 128 KRFADGEIYVQLQESVRGCDVYLVQPTCPPANENLMELLIMIDACRRASAKNITAVIPYF 187
+RF DGE+Y++ E + G +++++ T A +ME+++ + A + K++ + PY+
Sbjct: 32 RRFPDGELYLRYDEDLTGHNIFIIGNTHSDAE--VMEMILTLSAIQDYRTKSVNIIAPYY 89
Query: 188 GYARADRKTQGRESIAAKLVANLITEAGADRVLACDLHSGQSMGYFDIPVDHVYCQPVIL 247
GYAR ++ + E I+++++ I + ++ + D+H +++ Y + ++ I+
Sbjct: 90 GYARQHQRYKNGEPISSQILTE-IYSSYSNSIATVDIHDEKTLSYSKVKFSDLHANDAIV 148
Query: 248 DYLASKTVSSNDLVVVSPDVGGVARARAFAKKLSDAPLAIVDKRRHGHNVA-EVMNLIGD 306
Y + V VVSPD GG+AR + KL I KR V +V N+ D
Sbjct: 149 RYYKNVDVD----YVVSPDDGGLARVADISAKLGKKHFFIEKKRIDDRTVEMKVPNV--D 202
Query: 307 VKGKVAVMVDDMIDTAGTIAKGAALLHQEGAREVYACCTHAVF 349
V GK ++VDD+I T GTIAK + LL ++GA ++Y H +F
Sbjct: 203 VNGKKLLIVDDIISTGGTIAKSSGLLREKGASKIYVSAVHGLF 245
>pdb|1VDM|A Chain A, Crystal Structure Of Purine Phosphoribosyltransferase From
Pyrococcus Horikoshii Ot3
pdb|1VDM|B Chain B, Crystal Structure Of Purine Phosphoribosyltransferase From
Pyrococcus Horikoshii Ot3
pdb|1VDM|C Chain C, Crystal Structure Of Purine Phosphoribosyltransferase From
Pyrococcus Horikoshii Ot3
pdb|1VDM|D Chain D, Crystal Structure Of Purine Phosphoribosyltransferase From
Pyrococcus Horikoshii Ot3
pdb|1VDM|E Chain E, Crystal Structure Of Purine Phosphoribosyltransferase From
Pyrococcus Horikoshii Ot3
pdb|1VDM|F Chain F, Crystal Structure Of Purine Phosphoribosyltransferase From
Pyrococcus Horikoshii Ot3
pdb|1VDM|G Chain G, Crystal Structure Of Purine Phosphoribosyltransferase From
Pyrococcus Horikoshii Ot3
pdb|1VDM|H Chain H, Crystal Structure Of Purine Phosphoribosyltransferase From
Pyrococcus Horikoshii Ot3
pdb|1VDM|I Chain I, Crystal Structure Of Purine Phosphoribosyltransferase From
Pyrococcus Horikoshii Ot3
pdb|1VDM|J Chain J, Crystal Structure Of Purine Phosphoribosyltransferase From
Pyrococcus Horikoshii Ot3
pdb|1VDM|K Chain K, Crystal Structure Of Purine Phosphoribosyltransferase From
Pyrococcus Horikoshii Ot3
pdb|1VDM|L Chain L, Crystal Structure Of Purine Phosphoribosyltransferase From
Pyrococcus Horikoshii Ot3
Length = 153
Score = 38.5 bits (88), Expect = 0.006, Method: Compositional matrix adjust.
Identities = 28/101 (27%), Positives = 46/101 (45%), Gaps = 6/101 (5%)
Query: 250 LASKTVSSNDLVVVSPDVGGVARARAFAKKLSDAPLAIVDKRRH------GHNVAEVMNL 303
LA K V++ GG+ A + L D PL ++D + + G + +
Sbjct: 18 LAEKLREYKPDVIIGVARGGLIPAVRLSHILGDIPLKVIDVKFYKGIDERGEKPVITIPI 77
Query: 304 IGDVKGKVAVMVDDMIDTAGTIAKGAALLHQEGAREVYACC 344
GD+K K V+VDD+ DT T+ + + GA+E+ C
Sbjct: 78 HGDLKDKRVVIVDDVSDTGKTLEVVIEEVKKLGAKEIKIAC 118
>pdb|3HPV|A Chain A, Crystal Structure Analysis Of The 2,3-dioxygenase Lapb
From Pseudomonas Sp. Kl28
pdb|3HPV|B Chain B, Crystal Structure Analysis Of The 2,3-dioxygenase Lapb
From Pseudomonas Sp. Kl28
pdb|3HPV|C Chain C, Crystal Structure Analysis Of The 2,3-dioxygenase Lapb
From Pseudomonas Sp. Kl28
pdb|3HPV|D Chain D, Crystal Structure Analysis Of The 2,3-dioxygenase Lapb
From Pseudomonas Sp. Kl28
pdb|3HPY|A Chain A, Crystal Structure Analysis Of The 2,3-Dioxygenase Lapb
From Pseudomonas In The Complex With 4-Methylcatechol
pdb|3HPY|B Chain B, Crystal Structure Analysis Of The 2,3-Dioxygenase Lapb
From Pseudomonas In The Complex With 4-Methylcatechol
pdb|3HPY|C Chain C, Crystal Structure Analysis Of The 2,3-Dioxygenase Lapb
From Pseudomonas In The Complex With 4-Methylcatechol
pdb|3HPY|D Chain D, Crystal Structure Analysis Of The 2,3-Dioxygenase Lapb
From Pseudomonas In The Complex With 4-Methylcatechol
pdb|3HQ0|A Chain A, Crystal Structure Analysis Of The 2,3-Dioxygenase Lapb
From Pseudomonas In Complex With A Product
pdb|3HQ0|B Chain B, Crystal Structure Analysis Of The 2,3-Dioxygenase Lapb
From Pseudomonas In Complex With A Product
pdb|3HQ0|C Chain C, Crystal Structure Analysis Of The 2,3-Dioxygenase Lapb
From Pseudomonas In Complex With A Product
pdb|3HQ0|D Chain D, Crystal Structure Analysis Of The 2,3-Dioxygenase Lapb
From Pseudomonas In Complex With A Product
Length = 309
Score = 31.6 bits (70), Expect = 0.69, Method: Compositional matrix adjust.
Identities = 33/129 (25%), Positives = 54/129 (41%), Gaps = 17/129 (13%)
Query: 181 TAVIPYFGYARADRKTQGRESIAAKLVANLITEAGADRVLACDLHSGQSMGYFDIPVDHV 240
TA I +FG+ D+ T E + A L A +T R+ A ++ F++P H
Sbjct: 63 TAGIDFFGFKVLDKAT--LEKLDADLQAYGLTTT---RIPAGEMLETGERVRFELPSGH- 116
Query: 241 YCQPVILDYLASKTVSSNDLVVVSPDVGGVARARAFAKKLSDAPLAIVDKRRHGHNVAEV 300
+++ A KT N + V+P R A P+ + +G N+AEV
Sbjct: 117 -----LIELYAEKTCVGNGISEVNPAPWNAQREHGIA------PIQLDHCLLYGPNIAEV 165
Query: 301 MNLIGDVKG 309
+ +V G
Sbjct: 166 QKIFTEVLG 174
>pdb|1FLG|A Chain A, Crystal Structure Of The Quinoprotein Ethanol
Dehydrogenase From Pseudomonas Aeruginosa
pdb|1FLG|B Chain B, Crystal Structure Of The Quinoprotein Ethanol
Dehydrogenase From Pseudomonas Aeruginosa
Length = 582
Score = 30.8 bits (68), Expect = 1.3, Method: Compositional matrix adjust.
Identities = 15/59 (25%), Positives = 29/59 (49%)
Query: 172 CRRASAKNITAVIPYFGYARADRKTQGRESIAAKLVANLITEAGADRVLACDLHSGQSM 230
++ +A N+ + P + Y+ D K +G+ES A + A R+ A D +G+ +
Sbjct: 33 LKQVNADNVFKLTPAWSYSFGDEKQRGQESQAIVSDGVIYVTASYSRLFALDAKTGKRL 91
>pdb|3OHP|A Chain A, Crystal Structure Of Hgprt From Vibrio Cholerae
pdb|3OHP|B Chain B, Crystal Structure Of Hgprt From Vibrio Cholerae
pdb|3OHP|C Chain C, Crystal Structure Of Hgprt From Vibrio Cholerae
pdb|3OHP|D Chain D, Crystal Structure Of Hgprt From Vibrio Cholerae
Length = 177
Score = 30.4 bits (67), Expect = 1.7, Method: Compositional matrix adjust.
Identities = 14/43 (32%), Positives = 24/43 (55%)
Query: 302 NLIGDVKGKVAVMVDDMIDTAGTIAKGAALLHQEGAREVYACC 344
+L D+KGK ++V+D+IDT T+ K +L + + C
Sbjct: 84 DLDDDIKGKDVLLVEDIIDTGNTLNKVKEILALREPKSIRICT 126
>pdb|3DEZ|A Chain A, Crystal Structure Of Orotate Phosphoribosyltransferase
From Streptococcus Mutans
pdb|3DEZ|B Chain B, Crystal Structure Of Orotate Phosphoribosyltransferase
From Streptococcus Mutans
Length = 243
Score = 28.9 bits (63), Expect = 4.3, Method: Compositional matrix adjust.
Identities = 21/78 (26%), Positives = 36/78 (46%), Gaps = 4/78 (5%)
Query: 261 VVVSPDVGGVARARAFAKKLSDAPLAIVDKRRHGHNVAEVMNLIGDV-KGKVAVMVDDMI 319
V+ G+ A K+ + PLA + + H + G V KG+ V+++D+I
Sbjct: 103 VIAGTATAGIPHGAIIADKM-NLPLAYIRSKPKDHGAGNQIE--GRVTKGQKMVIIEDLI 159
Query: 320 DTAGTIAKGAALLHQEGA 337
T G++ A +EGA
Sbjct: 160 STGGSVLDAVAAAQREGA 177
>pdb|2GGV|B Chain B, Crystal Structure Of The West Nile Virus Ns2b-Ns3
Protease, His51ala Mutant
Length = 185
Score = 28.9 bits (63), Expect = 4.5, Method: Compositional matrix adjust.
Identities = 17/60 (28%), Positives = 26/60 (43%), Gaps = 7/60 (11%)
Query: 302 NLIGDVKGKVAVMVDDMIDTAGTIAKGAALLHQEGAREVYA-------CCTHAVFRLDYK 354
L+G + VMV+ + T KGAAL+ EG + Y C ++L +K
Sbjct: 28 GLLGSYQAGAGVMVEGVFHTLWATTKGAALMSGEGRLDPYWGSVKEDRLCYGGPWQLQHK 87
>pdb|1J7J|A Chain A, Crystal Structure Of The Hprt From Salmonella Typhimurium
pdb|1J7J|B Chain B, Crystal Structure Of The Hprt From Salmonella Typhimurium
Length = 178
Score = 28.9 bits (63), Expect = 4.9, Method: Compositional matrix adjust.
Identities = 18/53 (33%), Positives = 31/53 (58%), Gaps = 5/53 (9%)
Query: 295 HNVAEVMNLIGDVKGKVAVMVDDMIDTAGTIAKGAALLHQEGARE--VYACCT 345
+V + +L D++GK ++V+D+ID+ T++K +L G RE A CT
Sbjct: 78 RDVKILKDLDEDIRGKDVLIVEDIIDSGNTLSKVREIL---GLREPKSLAICT 127
>pdb|3M3H|A Chain A, 1.75 Angstrom Resolution Crystal Structure Of An Orotate
Phosphoribosyltransferase From Bacillus Anthracis Str.
'ames Ancestor'
pdb|3OSC|A Chain A, 2.65 Angstrom Resolution Crystal Structure Of An Orotate
Phosphoribosyltransferase From Bacillus Anthracis Str.
'ames Ancestor' In Complex With
5-Phospho-Alpha-D-Ribosyl Diphosphate (Prpp)
pdb|3OSC|B Chain B, 2.65 Angstrom Resolution Crystal Structure Of An Orotate
Phosphoribosyltransferase From Bacillus Anthracis Str.
'ames Ancestor' In Complex With
5-Phospho-Alpha-D-Ribosyl Diphosphate (Prpp)
pdb|3OSC|C Chain C, 2.65 Angstrom Resolution Crystal Structure Of An Orotate
Phosphoribosyltransferase From Bacillus Anthracis Str.
'ames Ancestor' In Complex With
5-Phospho-Alpha-D-Ribosyl Diphosphate (Prpp)
Length = 234
Score = 28.5 bits (62), Expect = 6.4, Method: Compositional matrix adjust.
Identities = 17/64 (26%), Positives = 31/64 (48%), Gaps = 2/64 (3%)
Query: 261 VVVSPDVGGVARARAFAKKLSDAPLAIVDKRRHGHNVAEVMNLIGDVKGKVAVMVDDMID 320
V+ G+A A + ++ D P+ V + GH + + KG+ V+V+D+I
Sbjct: 91 VIAGTATAGIAHAAWVSDRM-DLPMCYVRSKAKGHGKGNQIEGKAE-KGQKVVVVEDLIS 148
Query: 321 TAGT 324
T G+
Sbjct: 149 TGGS 152
>pdb|1G9S|A Chain A, Crystal Structure Of A Complex Between E.Coli Hprt And Imp
pdb|1G9S|B Chain B, Crystal Structure Of A Complex Between E.Coli Hprt And Imp
pdb|1G9T|A Chain A, Crystal Structure Of E.Coli Hprt-Gmp Complex
pdb|1G9T|B Chain B, Crystal Structure Of E.Coli Hprt-Gmp Complex
pdb|1GRV|A Chain A, Hypoxanthine Phosphoribosyltransferase From E. Coli
pdb|1GRV|B Chain B, Hypoxanthine Phosphoribosyltransferase From E. Coli
Length = 182
Score = 27.7 bits (60), Expect = 8.9, Method: Compositional matrix adjust.
Identities = 14/44 (31%), Positives = 27/44 (61%), Gaps = 1/44 (2%)
Query: 302 NLIGDVKGKVAVMVDDMIDTAGTIAKGAALLHQEGAREVYACCT 345
+L D++GK ++V+D+ID+ T++K +L + + A CT
Sbjct: 89 DLDEDIRGKDVLIVEDIIDSGNTLSKVREILSLREPKSL-AICT 131
>pdb|1AO0|A Chain A, Glutamine Phosphoribosylpyrophosphate (Prpp)
Amidotransferase From B. Subtilis Complexed With Adp And
Gmp
pdb|1AO0|B Chain B, Glutamine Phosphoribosylpyrophosphate (Prpp)
Amidotransferase From B. Subtilis Complexed With Adp And
Gmp
pdb|1AO0|C Chain C, Glutamine Phosphoribosylpyrophosphate (Prpp)
Amidotransferase From B. Subtilis Complexed With Adp And
Gmp
pdb|1AO0|D Chain D, Glutamine Phosphoribosylpyrophosphate (Prpp)
Amidotransferase From B. Subtilis Complexed With Adp And
Gmp
Length = 459
Score = 27.7 bits (60), Expect = 9.1, Method: Compositional matrix adjust.
Identities = 16/37 (43%), Positives = 21/37 (56%)
Query: 305 GDVKGKVAVMVDDMIDTAGTIAKGAALLHQEGAREVY 341
G V+GK VMVDD I T + +L + GA EV+
Sbjct: 334 GVVEGKRVVMVDDSIVRGTTSRRIVTMLREAGATEVH 370
>pdb|1GPH|1 Chain 1, Structure Of The Allosteric Regulatory Enzyme Of Purine
Biosynthesis
pdb|1GPH|2 Chain 2, Structure Of The Allosteric Regulatory Enzyme Of Purine
Biosynthesis
pdb|1GPH|3 Chain 3, Structure Of The Allosteric Regulatory Enzyme Of Purine
Biosynthesis
pdb|1GPH|4 Chain 4, Structure Of The Allosteric Regulatory Enzyme Of Purine
Biosynthesis
Length = 465
Score = 27.7 bits (60), Expect = 9.3, Method: Compositional matrix adjust.
Identities = 16/37 (43%), Positives = 21/37 (56%)
Query: 305 GDVKGKVAVMVDDMIDTAGTIAKGAALLHQEGAREVY 341
G V+GK VMVDD I T + +L + GA EV+
Sbjct: 334 GVVEGKRVVMVDDSIVRGTTSRRIVTMLREAGATEVH 370
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.321 0.135 0.394
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 8,804,305
Number of Sequences: 62578
Number of extensions: 327710
Number of successful extensions: 845
Number of sequences better than 100.0: 25
Number of HSP's better than 100.0 without gapping: 20
Number of HSP's successfully gapped in prelim test: 5
Number of HSP's that attempted gapping in prelim test: 804
Number of HSP's gapped (non-prelim): 25
length of query: 355
length of database: 14,973,337
effective HSP length: 100
effective length of query: 255
effective length of database: 8,715,537
effective search space: 2222461935
effective search space used: 2222461935
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 52 (24.6 bits)