Query 018472
Match_columns 355
No_of_seqs 284 out of 2653
Neff 6.0
Searched_HMMs 46136
Date Fri Mar 29 09:18:38 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/018472.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/018472hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 COG0462 PrsA Phosphoribosylpyr 100.0 8.2E-83 1.8E-87 612.7 30.1 256 96-353 2-258 (314)
2 PRK04923 ribose-phosphate pyro 100.0 2.6E-73 5.7E-78 554.6 31.0 257 96-353 4-261 (319)
3 PRK02269 ribose-phosphate pyro 100.0 6.9E-73 1.5E-77 552.3 30.8 256 97-353 4-261 (320)
4 PRK00553 ribose-phosphate pyro 100.0 1.3E-72 2.8E-77 552.4 31.8 257 95-353 6-262 (332)
5 PRK02812 ribose-phosphate pyro 100.0 2.1E-72 4.6E-77 550.3 31.0 272 80-353 3-274 (330)
6 PRK02458 ribose-phosphate pyro 100.0 3.9E-72 8.4E-77 547.4 30.8 257 95-353 6-262 (323)
7 PTZ00145 phosphoribosylpyropho 100.0 4.1E-72 8.9E-77 561.4 30.3 255 97-353 118-379 (439)
8 PRK07199 phosphoribosylpyropho 100.0 2E-70 4.3E-75 530.9 30.7 249 99-353 3-255 (301)
9 KOG1448 Ribose-phosphate pyrop 100.0 1.7E-71 3.7E-76 525.2 22.1 256 97-353 2-258 (316)
10 PRK03092 ribose-phosphate pyro 100.0 2.4E-69 5.3E-74 524.0 28.2 243 110-353 1-245 (304)
11 PRK01259 ribose-phosphate pyro 100.0 9.8E-69 2.1E-73 520.9 30.1 252 99-353 1-252 (309)
12 PLN02369 ribose-phosphate pyro 100.0 9.1E-68 2E-72 512.6 28.5 246 108-353 1-246 (302)
13 PLN02297 ribose-phosphate pyro 100.0 1.8E-67 4E-72 513.5 30.2 252 95-353 13-274 (326)
14 PRK06827 phosphoribosylpyropho 100.0 2E-67 4.3E-72 522.8 30.3 252 96-350 6-305 (382)
15 PRK00934 ribose-phosphate pyro 100.0 2.7E-67 5.8E-72 505.7 29.9 248 100-353 1-248 (285)
16 TIGR01251 ribP_PPkin ribose-ph 100.0 2.3E-66 5.1E-71 504.1 30.9 252 99-353 1-254 (308)
17 KOG1503 Phosphoribosylpyrophos 100.0 4.1E-55 8.8E-60 403.3 24.7 260 93-354 3-292 (354)
18 PF13793 Pribosyltran_N: N-ter 100.0 3.7E-41 8E-46 284.5 14.8 116 99-215 1-116 (116)
19 PF14572 Pribosyl_synth: Phosp 99.9 6.9E-23 1.5E-27 184.9 9.0 97 256-353 1-127 (184)
20 PRK13811 orotate phosphoribosy 99.8 1.5E-18 3.1E-23 155.8 12.9 136 205-344 3-139 (170)
21 PRK13812 orotate phosphoribosy 99.6 1.3E-14 2.8E-19 131.0 12.8 137 203-344 2-142 (176)
22 TIGR01203 HGPRTase hypoxanthin 99.6 1.8E-14 3.9E-19 128.8 11.7 103 242-346 11-121 (166)
23 PRK08525 amidophosphoribosyltr 99.6 3.6E-14 7.7E-19 144.9 13.4 107 245-353 263-384 (445)
24 PRK09162 hypoxanthine-guanine 99.5 4.3E-14 9.3E-19 128.0 12.2 103 242-346 25-134 (181)
25 PRK15423 hypoxanthine phosphor 99.5 1.2E-13 2.6E-18 125.1 13.4 103 242-345 17-128 (178)
26 PRK13809 orotate phosphoribosy 99.5 1E-13 2.2E-18 128.2 12.8 138 205-345 11-154 (206)
27 PLN02293 adenine phosphoribosy 99.5 1.9E-13 4.2E-18 124.6 13.5 94 258-352 62-168 (187)
28 PF00156 Pribosyltran: Phospho 99.5 2E-13 4.4E-18 114.2 12.3 102 242-346 13-125 (125)
29 COG0634 Hpt Hypoxanthine-guani 99.5 2.9E-13 6.3E-18 121.1 12.8 101 242-344 20-128 (178)
30 PRK07322 adenine phosphoribosy 99.5 2.1E-13 4.5E-18 123.2 12.0 116 228-345 19-156 (178)
31 PRK02304 adenine phosphoribosy 99.5 6.3E-13 1.4E-17 119.4 13.0 110 239-349 28-154 (175)
32 TIGR01367 pyrE_Therm orotate p 99.5 1.3E-12 2.9E-17 119.0 14.3 96 244-345 46-141 (187)
33 PRK05205 bifunctional pyrimidi 99.5 4.5E-13 9.7E-18 120.7 11.1 105 242-346 15-133 (176)
34 PLN02238 hypoxanthine phosphor 99.4 1.4E-12 3E-17 119.1 13.2 101 242-344 20-132 (189)
35 PRK00455 pyrE orotate phosphor 99.4 2.6E-12 5.7E-17 118.0 13.8 137 203-347 4-151 (202)
36 PRK05793 amidophosphoribosyltr 99.4 9.7E-13 2.1E-17 135.2 11.1 109 244-354 275-398 (469)
37 PRK12560 adenine phosphoribosy 99.4 2.8E-12 6E-17 116.9 11.6 124 218-345 11-150 (187)
38 TIGR01090 apt adenine phosphor 99.4 4.4E-12 9.5E-17 113.4 12.5 100 246-346 34-146 (169)
39 PTZ00271 hypoxanthine-guanine 99.4 3.6E-12 7.9E-17 118.3 11.7 104 242-345 36-154 (211)
40 PRK13810 orotate phosphoribosy 99.4 9.4E-12 2E-16 113.5 12.9 136 204-344 16-157 (187)
41 PRK00129 upp uracil phosphorib 99.4 6.3E-12 1.4E-16 116.3 11.7 88 258-345 70-160 (209)
42 PRK02277 orotate phosphoribosy 99.3 8.3E-12 1.8E-16 114.8 12.0 88 258-346 85-177 (200)
43 TIGR00336 pyrE orotate phospho 99.3 5.7E-12 1.2E-16 113.3 10.6 85 257-344 53-143 (173)
44 PTZ00149 hypoxanthine phosphor 99.3 1.8E-11 3.9E-16 115.7 12.2 103 242-345 66-186 (241)
45 TIGR01091 upp uracil phosphori 99.3 3.2E-11 7E-16 111.5 11.6 88 258-345 68-158 (207)
46 PRK11595 DNA utilization prote 99.3 3.6E-12 7.7E-17 119.3 5.1 146 179-345 63-223 (227)
47 PRK09219 xanthine phosphoribos 99.2 1.3E-10 2.7E-15 106.3 12.6 99 245-344 37-152 (189)
48 TIGR01744 XPRTase xanthine pho 99.2 1.5E-10 3.3E-15 105.9 12.6 101 243-344 35-152 (191)
49 TIGR01743 purR_Bsub pur operon 99.2 8.3E-10 1.8E-14 105.9 18.0 162 165-344 42-229 (268)
50 PRK08558 adenine phosphoribosy 99.2 1.7E-10 3.8E-15 108.9 12.6 100 245-345 98-212 (238)
51 PRK05500 bifunctional orotidin 99.2 1.5E-10 3.2E-15 119.1 13.1 172 159-344 248-428 (477)
52 COG0461 PyrE Orotate phosphori 99.2 3.1E-10 6.7E-15 104.5 13.6 136 205-344 4-147 (201)
53 TIGR00201 comF comF family pro 99.2 5.7E-10 1.2E-14 101.6 13.7 125 198-345 55-188 (190)
54 PRK09213 pur operon repressor; 99.1 2.7E-09 5.9E-14 102.6 17.8 98 246-344 118-231 (271)
55 COG0503 Apt Adenine/guanine ph 99.1 6.3E-10 1.4E-14 100.9 12.0 97 248-345 43-152 (179)
56 PRK09123 amidophosphoribosyltr 99.1 6.7E-10 1.5E-14 114.6 13.7 105 244-351 282-407 (479)
57 PLN02440 amidophosphoribosyltr 99.1 7.5E-10 1.6E-14 114.3 12.8 112 232-346 244-377 (479)
58 PRK06031 phosphoribosyltransfe 99.1 1.2E-09 2.6E-14 102.9 12.7 100 244-344 70-189 (233)
59 PRK08341 amidophosphoribosyltr 99.1 9.4E-10 2E-14 112.4 11.8 103 244-348 258-373 (442)
60 COG0856 Orotate phosphoribosyl 99.0 1.2E-09 2.5E-14 97.8 10.2 87 257-344 85-176 (203)
61 COG1040 ComFC Predicted amidop 99.0 5.8E-10 1.3E-14 104.5 8.7 123 200-345 90-220 (225)
62 PRK07272 amidophosphoribosyltr 99.0 7.7E-10 1.7E-14 114.1 9.5 108 244-353 272-394 (484)
63 PRK09177 xanthine-guanine phos 99.0 2.2E-09 4.8E-14 95.2 10.4 87 243-334 19-109 (156)
64 PRK09246 amidophosphoribosyltr 99.0 3.2E-09 6.9E-14 110.2 11.9 103 244-347 279-396 (501)
65 COG2236 Predicted phosphoribos 99.0 2.7E-09 5.8E-14 97.7 9.0 98 242-341 15-119 (192)
66 PRK07349 amidophosphoribosyltr 98.9 9.8E-09 2.1E-13 106.4 12.3 101 243-345 298-413 (500)
67 TIGR01134 purF amidophosphorib 98.9 1.2E-08 2.6E-13 104.4 12.4 101 243-345 259-374 (442)
68 COG1926 Predicted phosphoribos 98.9 1.1E-08 2.4E-13 94.1 10.7 105 239-345 7-160 (220)
69 PRK06781 amidophosphoribosyltr 98.9 1.4E-08 2.9E-13 104.7 11.7 106 244-351 270-390 (471)
70 KOG3367 Hypoxanthine-guanine p 98.9 8.5E-09 1.8E-13 92.1 8.4 101 243-344 46-160 (216)
71 PRK07631 amidophosphoribosyltr 98.8 2.1E-08 4.6E-13 103.3 11.1 105 244-350 270-389 (475)
72 PRK06388 amidophosphoribosyltr 98.8 7.7E-08 1.7E-12 99.2 12.8 114 232-347 260-394 (474)
73 KOG1712 Adenine phosphoribosyl 98.7 6.4E-08 1.4E-12 85.7 8.6 103 243-347 45-160 (183)
74 PRK07847 amidophosphoribosyltr 98.7 1.4E-07 3.1E-12 98.0 11.5 104 244-349 289-407 (510)
75 TIGR01251 ribP_PPkin ribose-ph 98.7 1.1E-06 2.4E-11 85.9 17.1 136 98-254 161-298 (308)
76 COG2065 PyrR Pyrimidine operon 98.6 3E-07 6.5E-12 81.8 10.2 102 243-344 16-132 (179)
77 PF14681 UPRTase: Uracil phosp 98.4 3.3E-06 7.2E-11 78.2 11.6 89 258-346 67-160 (207)
78 PLN02541 uracil phosphoribosyl 98.3 3.1E-06 6.7E-11 80.5 10.6 88 258-345 102-195 (244)
79 COG0035 Upp Uracil phosphoribo 98.3 2.7E-06 5.9E-11 78.7 9.8 89 257-345 69-161 (210)
80 COG0034 PurF Glutamine phospho 98.1 7.6E-06 1.6E-10 83.1 8.5 103 243-347 269-386 (470)
81 KOG0572 Glutamine phosphoribos 97.4 0.00019 4.1E-09 71.6 5.7 156 181-346 210-393 (474)
82 PRK00934 ribose-phosphate pyro 97.2 0.014 3E-07 56.7 15.2 125 99-251 157-284 (285)
83 PRK07199 phosphoribosylpyropho 97.2 0.018 4E-07 56.4 16.0 130 98-253 162-293 (301)
84 COG0462 PrsA Phosphoribosylpyr 97.0 0.019 4.2E-07 56.5 14.3 136 98-253 164-303 (314)
85 PRK02458 ribose-phosphate pyro 96.9 0.037 8E-07 54.8 15.8 136 98-253 170-306 (323)
86 PRK04923 ribose-phosphate pyro 96.9 0.031 6.7E-07 55.3 14.8 138 98-253 168-307 (319)
87 PF15609 PRTase_2: Phosphoribo 96.8 0.0081 1.8E-07 55.1 9.0 103 240-345 37-157 (191)
88 PRK02269 ribose-phosphate pyro 96.7 0.061 1.3E-06 53.2 15.4 136 99-253 168-306 (320)
89 PRK01259 ribose-phosphate pyro 96.7 0.057 1.2E-06 53.1 15.1 137 99-253 161-298 (309)
90 PRK03092 ribose-phosphate pyro 96.6 0.061 1.3E-06 52.8 14.7 135 98-253 150-290 (304)
91 PLN02369 ribose-phosphate pyro 96.5 0.1 2.2E-06 51.2 15.3 136 97-253 151-291 (302)
92 PF13793 Pribosyltran_N: N-ter 96.3 0.063 1.4E-06 45.5 11.0 82 263-346 3-88 (116)
93 PRK06827 phosphoribosylpyropho 96.1 0.17 3.7E-06 51.3 14.5 138 99-253 210-357 (382)
94 PRK02812 ribose-phosphate pyro 96.0 0.24 5.2E-06 49.3 15.1 135 98-253 180-319 (330)
95 PRK00553 ribose-phosphate pyro 96.0 0.24 5.3E-06 49.3 14.9 138 98-253 169-311 (332)
96 PTZ00145 phosphoribosylpyropho 95.9 0.34 7.3E-06 50.0 16.1 137 99-253 281-425 (439)
97 PLN02297 ribose-phosphate pyro 93.1 1.3 2.9E-05 44.0 11.9 85 261-346 17-105 (326)
98 PRK09162 hypoxanthine-guanine 92.0 1.6 3.4E-05 39.5 10.1 84 98-185 42-133 (181)
99 PRK15423 hypoxanthine phosphor 90.9 4 8.7E-05 37.0 11.5 83 99-185 37-128 (178)
100 TIGR01203 HGPRTase hypoxanthin 90.5 3.1 6.7E-05 37.1 10.3 84 98-185 27-120 (166)
101 PRK00129 upp uracil phosphorib 89.8 4.2 9.2E-05 37.6 10.9 84 98-185 71-160 (209)
102 PF14572 Pribosyl_synth: Phosp 89.7 1.1 2.3E-05 41.2 6.8 97 137-253 75-173 (184)
103 PLN02440 amidophosphoribosyltr 89.2 3 6.4E-05 43.6 10.4 120 97-223 276-419 (479)
104 KOG1017 Predicted uracil phosp 89.1 0.52 1.1E-05 43.8 4.2 38 302-339 182-219 (267)
105 PRK02304 adenine phosphoribosy 87.7 7.3 0.00016 34.8 10.7 79 98-180 53-145 (175)
106 TIGR01091 upp uracil phosphori 87.4 6.4 0.00014 36.3 10.4 85 97-185 68-158 (207)
107 PRK13811 orotate phosphoribosy 86.7 4.9 0.00011 36.0 9.0 78 104-187 64-141 (170)
108 PRK07272 amidophosphoribosyltr 86.4 2.5 5.4E-05 44.3 7.9 120 98-224 287-430 (484)
109 PLN02238 hypoxanthine phosphor 86.3 12 0.00026 34.1 11.4 83 98-184 37-132 (189)
110 PRK08525 amidophosphoribosyltr 85.6 3.7 8.1E-05 42.5 8.6 84 98-185 277-376 (445)
111 TIGR01367 pyrE_Therm orotate p 84.7 13 0.00027 33.9 10.8 78 97-181 59-137 (187)
112 PRK09123 amidophosphoribosyltr 84.0 8.4 0.00018 40.4 10.4 117 98-221 297-437 (479)
113 PRK00455 pyrE orotate phosphor 83.2 9.8 0.00021 34.8 9.5 81 97-182 65-146 (202)
114 PF00156 Pribosyltran: Phospho 81.6 17 0.00037 29.6 9.6 85 97-185 28-124 (125)
115 PRK05793 amidophosphoribosyltr 81.5 8.1 0.00018 40.3 9.1 83 98-184 290-388 (469)
116 PRK13812 orotate phosphoribosy 81.3 8.8 0.00019 34.7 8.2 74 103-181 65-139 (176)
117 TIGR01090 apt adenine phosphor 81.2 19 0.00041 32.0 10.3 75 105-183 55-143 (169)
118 PRK08341 amidophosphoribosyltr 80.6 7 0.00015 40.5 8.2 83 98-184 273-369 (442)
119 TIGR01134 purF amidophosphorib 80.0 11 0.00024 39.0 9.4 116 98-223 275-417 (442)
120 PTZ00271 hypoxanthine-guanine 79.8 19 0.00042 33.6 10.2 83 98-184 58-153 (211)
121 PF15610 PRTase_3: PRTase ComF 79.6 2.3 5E-05 41.2 4.0 35 307-341 136-170 (274)
122 PRK05205 bifunctional pyrimidi 79.5 22 0.00049 31.7 10.3 84 98-185 32-132 (176)
123 PRK02277 orotate phosphoribosy 78.9 21 0.00047 32.7 10.1 84 97-184 86-175 (200)
124 PLN02293 adenine phosphoribosy 77.5 36 0.00077 31.1 11.1 81 98-182 64-158 (187)
125 TIGR00336 pyrE orotate phospho 76.9 18 0.00038 32.4 8.8 78 105-187 63-145 (173)
126 PLN02501 digalactosyldiacylgly 76.3 26 0.00057 38.8 11.2 171 101-281 281-460 (794)
127 cd05014 SIS_Kpsf KpsF-like pro 74.4 17 0.00038 29.8 7.6 79 98-182 2-80 (128)
128 PRK12560 adenine phosphoribosy 72.8 28 0.0006 31.7 9.0 81 97-181 52-146 (187)
129 PRK07349 amidophosphoribosyltr 72.2 15 0.00032 38.8 8.0 76 105-184 321-412 (500)
130 TIGR02990 ectoine_eutA ectoine 71.8 39 0.00085 32.1 10.1 101 166-286 109-210 (239)
131 COG0634 Hpt Hypoxanthine-guani 70.5 45 0.00097 30.6 9.6 84 97-184 35-128 (178)
132 COG0034 PurF Glutamine phospho 70.0 15 0.00032 38.3 7.2 112 99-224 286-428 (470)
133 PRK09246 amidophosphoribosyltr 69.4 19 0.00042 37.8 8.2 76 105-184 302-393 (501)
134 PRK14093 UDP-N-acetylmuramoyla 68.9 53 0.0011 34.0 11.2 107 109-228 297-413 (479)
135 COG0856 Orotate phosphoribosyl 68.7 42 0.0009 30.9 9.0 93 86-183 74-175 (203)
136 PRK08558 adenine phosphoribosy 68.1 45 0.00099 31.6 9.7 81 97-181 112-208 (238)
137 PF01488 Shikimate_DH: Shikima 67.3 13 0.00028 31.7 5.4 37 304-344 7-43 (135)
138 PF06574 FAD_syn: FAD syntheta 64.1 14 0.0003 32.7 5.1 77 201-289 61-144 (157)
139 COG0540 PyrB Aspartate carbamo 63.6 64 0.0014 32.1 9.9 46 302-349 151-196 (316)
140 PTZ00149 hypoxanthine phosphor 63.4 88 0.0019 29.9 10.6 95 86-184 69-185 (241)
141 PRK03803 murD UDP-N-acetylmura 63.3 35 0.00076 34.8 8.5 154 107-278 277-434 (448)
142 PRK11595 DNA utilization prote 62.7 23 0.0005 33.0 6.6 72 108-183 135-221 (227)
143 COG2179 Predicted hydrolase of 62.6 87 0.0019 28.6 9.8 112 208-329 20-151 (175)
144 PRK13809 orotate phosphoribosy 61.7 30 0.00064 32.2 7.0 72 105-180 76-149 (206)
145 PRK06781 amidophosphoribosyltr 61.7 26 0.00057 36.7 7.3 76 105-184 292-383 (471)
146 PF01012 ETF: Electron transfe 61.4 76 0.0017 27.5 9.3 105 158-285 13-117 (164)
147 PRK13810 orotate phosphoribosy 60.7 34 0.00073 31.3 7.1 79 105-188 82-160 (187)
148 PF06300 Tsp45I: Tsp45I type I 60.2 25 0.00054 33.6 6.1 55 158-220 52-106 (261)
149 PF01972 SDH_sah: Serine dehyd 59.5 79 0.0017 31.0 9.6 76 204-281 37-115 (285)
150 PRK00856 pyrB aspartate carbam 58.9 1.1E+02 0.0025 30.0 10.9 42 304-347 151-192 (305)
151 TIGR01143 murF UDP-N-acetylmur 58.1 84 0.0018 31.7 10.2 130 107-253 258-393 (417)
152 KOG1448 Ribose-phosphate pyrop 57.8 38 0.00083 33.5 7.2 130 52-191 124-256 (316)
153 PRK07322 adenine phosphoribosy 57.6 1.3E+02 0.0028 26.9 10.3 91 98-193 54-163 (178)
154 PRK06242 flavodoxin; Provision 57.1 1.2E+02 0.0026 25.6 9.6 96 106-224 14-111 (150)
155 PRK03815 murD UDP-N-acetylmura 57.0 1.1E+02 0.0023 31.2 10.7 151 107-278 236-389 (401)
156 PRK08564 5'-methylthioadenosin 56.7 12 0.00025 36.3 3.5 79 96-183 7-90 (267)
157 PF01380 SIS: SIS domain SIS d 56.1 6.5 0.00014 32.3 1.5 82 96-182 5-86 (131)
158 KOG0814 Glyoxylase [General fu 55.0 11 0.00025 34.7 2.9 44 301-347 23-66 (237)
159 smart00450 RHOD Rhodanese Homo 54.2 24 0.00052 26.7 4.3 34 307-343 54-87 (100)
160 PRK13814 pyrB aspartate carbam 53.9 1.3E+02 0.0029 29.7 10.5 155 142-349 42-196 (310)
161 PRK07631 amidophosphoribosyltr 53.6 45 0.00097 35.0 7.4 75 106-184 293-383 (475)
162 PRK07823 5'-methylthioadenosin 53.4 19 0.0004 34.9 4.3 82 93-183 2-87 (264)
163 PRK11930 putative bifunctional 52.9 93 0.002 34.6 10.2 148 109-272 292-446 (822)
164 cd00158 RHOD Rhodanese Homolog 52.7 27 0.00059 26.0 4.4 34 307-343 48-81 (89)
165 cd01529 4RHOD_Repeats Member o 50.7 29 0.00062 27.2 4.4 33 308-343 55-87 (96)
166 COG2185 Sbm Methylmalonyl-CoA 50.7 33 0.00072 30.3 5.0 34 146-182 64-97 (143)
167 PF14681 UPRTase: Uracil phosp 49.7 1.5E+02 0.0033 27.2 9.6 83 97-183 67-157 (207)
168 TIGR00393 kpsF KpsF/GutQ famil 49.6 59 0.0013 30.4 7.0 80 98-183 2-81 (268)
169 PLN02640 glucose-6-phosphate 1 49.4 9.7 0.00021 40.8 1.8 101 1-112 1-102 (573)
170 cd01444 GlpE_ST GlpE sulfurtra 48.4 27 0.00059 27.0 3.8 32 308-342 55-86 (96)
171 cd05710 SIS_1 A subgroup of th 48.1 29 0.00063 28.8 4.2 77 99-180 2-78 (120)
172 TIGR00658 orni_carb_tr ornithi 47.5 2.4E+02 0.0053 27.6 11.2 126 166-345 55-180 (304)
173 PRK09219 xanthine phosphoribos 45.0 2.4E+02 0.0053 25.7 10.2 71 104-178 58-146 (189)
174 PRK09177 xanthine-guanine phos 44.3 93 0.002 27.4 7.0 60 97-156 32-95 (156)
175 PRK01713 ornithine carbamoyltr 44.1 2.8E+02 0.0061 27.6 11.1 41 306-349 153-193 (334)
176 TIGR01744 XPRTase xanthine pho 43.7 2.4E+02 0.0051 25.8 9.8 77 98-178 52-146 (191)
177 COG0771 MurD UDP-N-acetylmuram 43.4 2.9E+02 0.0062 28.9 11.4 164 96-267 7-222 (448)
178 PRK07847 amidophosphoribosyltr 43.4 1.1E+02 0.0025 32.4 8.6 76 105-184 311-402 (510)
179 PRK04284 ornithine carbamoyltr 43.3 2.9E+02 0.0062 27.6 11.0 39 304-345 150-188 (332)
180 PRK06756 flavodoxin; Provision 42.5 1.4E+02 0.003 25.4 7.7 109 99-220 4-119 (148)
181 PRK14805 ornithine carbamoyltr 40.8 3.2E+02 0.0069 26.9 10.8 147 142-347 35-181 (302)
182 cd05008 SIS_GlmS_GlmD_1 SIS (S 40.7 1.1E+02 0.0024 24.9 6.6 77 99-181 2-78 (126)
183 PRK15482 transcriptional regul 40.6 52 0.0011 31.4 5.2 80 96-181 135-214 (285)
184 TIGR01743 purR_Bsub pur operon 40.1 2.4E+02 0.0053 27.4 9.7 77 98-178 130-223 (268)
185 PRK09271 flavodoxin; Provision 39.4 1.9E+02 0.0041 25.1 8.2 46 107-153 14-59 (160)
186 cd01518 RHOD_YceA Member of th 39.0 58 0.0012 25.7 4.5 33 308-343 60-92 (101)
187 cd05013 SIS_RpiR RpiR-like pro 38.9 71 0.0015 25.9 5.2 82 97-185 14-95 (139)
188 cd01523 RHOD_Lact_B Member of 38.3 48 0.001 26.0 3.9 30 308-341 60-89 (100)
189 PRK02472 murD UDP-N-acetylmura 37.8 2.1E+02 0.0046 28.9 9.4 147 107-276 279-430 (447)
190 PRK11543 gutQ D-arabinose 5-ph 36.9 1.2E+02 0.0026 29.2 7.2 81 96-182 42-122 (321)
191 TIGR01809 Shik-DH-AROM shikima 36.7 65 0.0014 31.1 5.2 35 306-344 122-156 (282)
192 KOG1503 Phosphoribosylpyrophos 36.6 2.6E+02 0.0056 27.2 8.9 81 271-353 19-103 (354)
193 cd04814 PA_M28_1 PA_M28_1: Pro 36.5 65 0.0014 28.3 4.7 40 306-345 45-98 (142)
194 PRK06031 phosphoribosyltransfe 36.3 2.9E+02 0.0063 26.1 9.4 79 98-180 86-185 (233)
195 TIGR01698 PUNP purine nucleoti 36.0 1.1E+02 0.0023 29.3 6.4 80 99-183 2-89 (237)
196 cd01519 RHOD_HSP67B2 Member of 35.9 61 0.0013 25.5 4.1 33 308-343 65-97 (106)
197 cd01528 RHOD_2 Member of the R 35.7 66 0.0014 25.3 4.3 33 308-343 57-89 (101)
198 PF04914 DltD_C: DltD C-termin 35.4 1E+02 0.0022 26.7 5.6 72 161-241 34-112 (130)
199 PF02006 DUF137: Protein of un 34.8 69 0.0015 29.2 4.6 83 167-252 48-149 (178)
200 PLN02962 hydroxyacylglutathion 34.6 41 0.00088 32.1 3.4 39 308-349 34-72 (251)
201 PRK05568 flavodoxin; Provision 34.4 2.7E+02 0.0059 23.1 8.9 97 107-220 15-115 (142)
202 PRK10773 murF UDP-N-acetylmura 34.3 3.9E+02 0.0084 27.4 10.7 131 109-254 288-422 (453)
203 cd01979 Pchlide_reductase_N Pc 34.0 1.4E+02 0.003 30.1 7.3 130 204-345 169-308 (396)
204 PRK08931 5'-methylthioadenosin 33.6 57 0.0012 32.0 4.3 79 96-183 3-86 (289)
205 cd04820 PA_M28_1_1 PA_M28_1_1: 33.0 81 0.0018 27.5 4.7 39 306-344 47-93 (137)
206 COG0106 HisA Phosphoribosylfor 32.8 4.5E+02 0.0098 25.2 14.1 110 103-234 59-179 (241)
207 PF09419 PGP_phosphatase: Mito 32.8 2.4E+02 0.0053 25.4 7.9 117 210-348 35-167 (168)
208 PRK00779 ornithine carbamoyltr 32.7 4.9E+02 0.011 25.5 10.9 38 304-345 147-184 (304)
209 cd01532 4RHOD_Repeat_1 Member 32.7 59 0.0013 25.3 3.5 32 308-342 49-82 (92)
210 PRK02006 murD UDP-N-acetylmura 32.5 2.5E+02 0.0055 29.0 9.1 148 109-278 326-478 (498)
211 PRK00676 hemA glutamyl-tRNA re 32.1 85 0.0019 31.5 5.3 36 305-344 170-205 (338)
212 COG3473 Maleate cis-trans isom 32.1 2.8E+02 0.0061 26.4 8.3 98 167-286 108-208 (238)
213 cd05017 SIS_PGI_PMI_1 The memb 32.0 2.7E+02 0.0059 22.7 7.6 74 99-181 2-75 (119)
214 cd05005 SIS_PHI Hexulose-6-pho 32.0 3.3E+02 0.0071 23.9 8.6 72 96-181 33-107 (179)
215 PRK09213 pur operon repressor; 31.7 3.6E+02 0.0077 26.3 9.3 77 98-178 132-225 (271)
216 COG1402 Uncharacterized protei 31.7 1.4E+02 0.0031 28.7 6.5 70 158-230 39-118 (250)
217 PRK13671 hypothetical protein; 31.3 2.3E+02 0.0049 28.0 8.0 67 150-224 5-71 (298)
218 PRK06703 flavodoxin; Provision 31.0 3.3E+02 0.0072 23.1 9.0 101 107-220 15-118 (151)
219 PRK05500 bifunctional orotidin 31.0 1.5E+02 0.0033 31.2 7.1 75 105-184 353-427 (477)
220 COG0770 MurF UDP-N-acetylmuram 30.9 3.2E+02 0.0069 28.5 9.4 143 107-264 287-434 (451)
221 PRK02102 ornithine carbamoyltr 30.8 5.5E+02 0.012 25.6 11.3 38 305-345 151-188 (331)
222 COG2185 Sbm Methylmalonyl-CoA 30.5 3.8E+02 0.0083 23.7 11.0 63 200-281 25-88 (143)
223 cd01527 RHOD_YgaP Member of th 30.2 77 0.0017 24.7 3.8 32 308-342 53-84 (99)
224 PRK11557 putative DNA-binding 29.8 1.1E+02 0.0023 28.9 5.4 80 96-181 128-207 (278)
225 cd01524 RHOD_Pyr_redox Member 29.7 96 0.0021 23.9 4.2 31 309-343 51-81 (90)
226 cd05009 SIS_GlmS_GlmD_2 SIS (S 29.5 1.5E+02 0.0033 24.7 5.8 81 96-180 13-93 (153)
227 PLN02469 hydroxyacylglutathion 29.2 74 0.0016 30.3 4.2 40 305-349 18-57 (258)
228 KOG4203 Armadillo/beta-Catenin 29.2 1E+02 0.0022 32.4 5.4 75 262-337 337-414 (473)
229 PRK11382 frlB fructoselysine-6 28.9 1.2E+02 0.0026 30.0 5.7 81 97-182 45-125 (340)
230 PRK11337 DNA-binding transcrip 28.8 1.1E+02 0.0023 29.3 5.3 80 96-181 140-219 (292)
231 PRK07432 5'-methylthioadenosin 28.6 1.1E+02 0.0025 30.0 5.4 82 96-183 3-86 (290)
232 PLN02160 thiosulfate sulfurtra 28.5 88 0.0019 26.7 4.1 33 308-343 80-112 (136)
233 PLN02527 aspartate carbamoyltr 28.3 5.8E+02 0.013 25.0 10.9 39 305-345 147-186 (306)
234 PLN02342 ornithine carbamoyltr 27.5 6.5E+02 0.014 25.4 10.9 147 142-347 82-228 (348)
235 cd01525 RHOD_Kc Member of the 27.5 1E+02 0.0022 24.2 4.2 31 309-342 65-95 (105)
236 PF02633 Creatininase: Creatin 27.5 2.1E+02 0.0046 26.6 6.9 67 159-228 37-112 (237)
237 PF13399 LytR_C: LytR cell env 27.1 1.8E+02 0.004 22.5 5.5 43 97-140 43-85 (90)
238 COG0503 Apt Adenine/guanine ph 26.4 3.1E+02 0.0067 24.7 7.5 76 99-178 56-145 (179)
239 PF05728 UPF0227: Uncharacteri 26.4 4.4E+02 0.0094 23.9 8.5 75 199-288 12-87 (187)
240 PRK08105 flavodoxin; Provision 26.1 1.9E+02 0.0041 25.1 5.9 109 98-221 3-121 (149)
241 COG1737 RpiR Transcriptional r 26.1 1E+02 0.0023 29.6 4.6 80 97-182 131-210 (281)
242 cd04795 SIS SIS domain. SIS (S 26.0 1.7E+02 0.0037 21.8 5.0 78 101-183 3-81 (87)
243 cd01447 Polysulfide_ST Polysul 25.9 67 0.0015 25.0 2.8 32 308-342 60-91 (103)
244 PRK05320 rhodanese superfamily 25.7 1.2E+02 0.0025 29.2 4.8 33 307-342 173-205 (257)
245 cd01080 NAD_bind_m-THF_DH_Cycl 25.6 1.4E+02 0.0031 26.7 5.1 35 305-344 40-75 (168)
246 cd01533 4RHOD_Repeat_2 Member 25.5 1.2E+02 0.0026 24.2 4.3 32 308-342 65-97 (109)
247 PRK14476 nitrogenase molybdenu 25.4 5.4E+02 0.012 26.6 10.0 133 204-346 184-344 (455)
248 TIGR01754 flav_RNR ribonucleot 25.4 2.7E+02 0.0059 23.4 6.7 44 107-153 14-58 (140)
249 PRK06388 amidophosphoribosyltr 24.9 5.4E+02 0.012 27.0 9.9 74 107-184 302-391 (474)
250 TIGR01752 flav_long flavodoxin 24.8 4.7E+02 0.01 22.8 9.1 99 107-223 13-119 (167)
251 PRK08202 purine nucleoside pho 24.6 2.9E+02 0.0063 26.6 7.4 80 96-183 21-111 (272)
252 PRK04663 murD UDP-N-acetylmura 24.5 5.3E+02 0.012 26.1 9.7 146 108-274 274-421 (438)
253 TIGR03127 RuMP_HxlB 6-phospho 24.4 4.8E+02 0.01 22.7 8.6 75 96-181 30-104 (179)
254 PF07931 CPT: Chloramphenicol 24.4 68 0.0015 29.0 2.8 24 309-333 83-107 (174)
255 TIGR02981 phageshock_pspE phag 23.9 1.6E+02 0.0035 23.9 4.7 31 309-342 58-88 (101)
256 PRK11921 metallo-beta-lactamas 23.9 3.9E+02 0.0084 26.9 8.5 121 86-220 238-365 (394)
257 PRK04194 hypothetical protein; 23.8 8.1E+02 0.017 25.2 13.5 124 210-343 137-281 (392)
258 COG2236 Predicted phosphoribos 23.7 4E+02 0.0087 24.6 7.8 62 95-156 28-98 (192)
259 cd01965 Nitrogenase_MoFe_beta_ 23.5 76 0.0016 32.4 3.3 38 306-347 296-333 (428)
260 PRK00258 aroE shikimate 5-dehy 23.5 1.6E+02 0.0035 28.1 5.4 36 306-345 120-155 (278)
261 PRK05627 bifunctional riboflav 23.2 3.9E+02 0.0084 26.3 8.1 79 201-291 69-154 (305)
262 cd06409 PB1_MUG70 The MUG70 pr 22.8 4.1E+02 0.0089 21.4 7.6 64 105-185 21-84 (86)
263 PF10087 DUF2325: Uncharacteri 22.7 3.9E+02 0.0085 21.1 8.0 72 99-177 2-76 (97)
264 cd01715 ETF_alpha The electron 22.6 2.5E+02 0.0054 24.5 6.1 66 209-285 45-110 (168)
265 PRK02122 glucosamine-6-phospha 22.6 1.1E+02 0.0024 33.4 4.5 38 307-348 367-409 (652)
266 PRK13940 glutamyl-tRNA reducta 22.4 1.4E+02 0.003 30.8 4.9 37 304-344 176-212 (414)
267 cd01534 4RHOD_Repeat_3 Member 22.3 1.5E+02 0.0033 23.0 4.2 31 308-342 55-85 (95)
268 cd01526 RHOD_ThiF Member of th 22.3 1.1E+02 0.0023 25.2 3.5 33 308-343 71-104 (122)
269 PRK07308 flavodoxin; Validated 22.1 4.8E+02 0.01 22.0 8.1 108 99-220 4-118 (146)
270 cd01449 TST_Repeat_2 Thiosulfa 22.1 1.5E+02 0.0033 23.7 4.3 33 308-343 77-109 (118)
271 cd01714 ETF_beta The electron 22.1 3.5E+02 0.0075 24.7 7.1 68 207-285 68-138 (202)
272 COG0196 RibF FAD synthase [Coe 21.9 7.2E+02 0.016 24.6 9.6 96 181-292 49-155 (304)
273 PRK11070 ssDNA exonuclease Rec 21.9 3.8E+02 0.0083 28.9 8.3 38 145-185 69-106 (575)
274 PF02875 Mur_ligase_C: Mur lig 21.8 1.4E+02 0.0031 23.1 4.0 35 311-345 13-48 (91)
275 PRK01710 murD UDP-N-acetylmura 21.6 5.5E+02 0.012 26.2 9.2 147 109-278 289-446 (458)
276 PRK10287 thiosulfate:cyanide s 21.5 2E+02 0.0043 23.5 4.8 31 309-342 60-90 (104)
277 TIGR02189 GlrX-like_plant Glut 21.4 1.1E+02 0.0024 24.6 3.3 40 95-134 6-47 (99)
278 TIGR01564 S_layer_MJ S-layer p 21.4 2.3E+02 0.0051 30.5 6.4 58 93-156 500-557 (571)
279 COG1134 TagH ABC-type polysacc 21.1 1E+02 0.0022 29.7 3.4 38 310-347 166-206 (249)
280 PF08410 DUF1737: Domain of un 20.9 2.6E+02 0.0057 20.6 4.8 34 99-132 6-41 (54)
281 PRK14453 chloramphenicol/florf 20.8 4E+02 0.0087 26.7 7.7 16 45-60 100-115 (347)
282 PF02225 PA: PA domain; Inter 20.4 1.8E+02 0.0038 22.6 4.2 35 306-344 31-65 (101)
283 cd04821 PA_M28_1_2 PA_M28_1_2: 20.2 2E+02 0.0044 25.6 4.9 40 306-345 47-101 (157)
284 PRK08373 aspartate kinase; Val 20.1 6.2E+02 0.013 25.4 8.9 29 192-220 102-130 (341)
285 PRK09004 FMN-binding protein M 20.1 5.6E+02 0.012 22.0 8.4 106 98-221 3-119 (146)
No 1
>COG0462 PrsA Phosphoribosylpyrophosphate synthetase [Nucleotide transport and metabolism / Amino acid transport and metabolism]
Probab=100.00 E-value=8.2e-83 Score=612.72 Aligned_cols=256 Identities=61% Similarity=0.971 Sum_probs=248.0
Q ss_pred CCCEEEEECCCCHHHHHHHHHHhCCceeceeeeecCCCceEEEeccCcCCCcEEEEccCCCCchhHHHHHHHHHHHHHhc
Q 018472 96 NNRIKLFSGTANPALSQEIACYMGVELGKINIKRFADGEIYVQLQESVRGCDVYLVQPTCPPANENLMELLIMIDACRRA 175 (355)
Q Consensus 96 ~~~~~ifsg~~~~~LA~~Ia~~Lg~~l~~~~~~~FpDGE~~v~i~~~VrG~dV~iiqs~~~p~nd~lmELll~idalr~~ 175 (355)
.++|+||+|++|++||++||+.||++++++++++|||||++|++.|+|||+||||+|++++|+||+|||||+|+||||++
T Consensus 2 ~~~~~if~g~s~~~La~~ia~~l~~~l~~~~~~rF~DGE~~V~i~EsVrg~dVfI~qs~~~pvnd~lmELLi~idA~k~a 81 (314)
T COG0462 2 MNNMKIFSGSSNPELAEKIAKRLGIPLGKVEVKRFPDGEIYVRIEESVRGKDVFIIQSTSPPVNDNLMELLIMIDALKRA 81 (314)
T ss_pred CCceEEEECCCCHHHHHHHHHHhCCCcccceeEEcCCCcEEEEecccccCCeEEEEeCCCCCcCHHHHHHHHHHHHHHhc
Confidence 35699999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCCeEEEEeeCccccccccccCCCCcchHHHHHHHHHHhCCCEEEEccCCchhhhcccCCccccccchHHHHHHHHhhcC
Q 018472 176 SAKNITAVIPYFGYARADRKTQGRESIAAKLVANLITEAGADRVLACDLHSGQSMGYFDIPVDHVYCQPVILDYLASKTV 255 (355)
Q Consensus 176 ~a~~ItlViPY~~YaRqDr~~~~ge~isak~vA~lL~~~G~d~VitvDlHs~~~~~~F~ip~~~l~a~~~La~~L~~~~~ 255 (355)
||++||+|+||||||||||++++||||+||++|+||+.+|+|+|+|+|+|.+|+|+||++|++|+++.|.+++|+++++
T Consensus 82 sA~~It~ViPY~gYARQDk~~~~repIsaklvA~lL~~aG~drv~TvDlH~~qiqgfFdipvdnl~a~p~l~~~~~~~~- 160 (314)
T COG0462 82 SAKRITAVIPYFGYARQDKAFKPREPISAKLVANLLETAGADRVLTVDLHAPQIQGFFDIPVDNLYAAPLLAEYIREKY- 160 (314)
T ss_pred CCceEEEEeecchhhccCcccCCCCCEeHHHHHHHHHHcCCCeEEEEcCCchhhcccCCCccccccchHHHHHHHHHhc-
Confidence 9999999999999999999889999999999999999999999999999999999999999999999999999999876
Q ss_pred CCCCeEEEecCCChhHHHHHHHHHcCCCCEEEEEEeec-CCCeeEEEeeecCCCCCEEEEEeCcccchHHHHHHHHHHHH
Q 018472 256 SSNDLVVVSPDVGGVARARAFAKKLSDAPLAIVDKRRH-GHNVAEVMNLIGDVKGKVAVMVDDMIDTAGTIAKGAALLHQ 334 (355)
Q Consensus 256 ~~~~~vVVspd~Ggv~rA~~lA~~L~~~p~~~v~K~R~-~~~~~e~~~l~gdVkGK~VLIVDDIIdTG~Tl~~aa~~Lk~ 334 (355)
+.++++||+||.||++||+.+|+.|+ .++++++|+|. ..+..+++.+.|||+||+|+|||||||||||+.+|++.|++
T Consensus 161 ~~~d~vVVSPD~Ggv~RAr~~A~~L~-~~~a~i~K~R~~~~~~v~~~~~~gdV~gk~~iiVDDiIdTgGTi~~Aa~~Lk~ 239 (314)
T COG0462 161 DLDDPVVVSPDKGGVKRARALADRLG-APLAIIDKRRDSSPNVVEVMNLIGDVEGKDVVIVDDIIDTGGTIAKAAKALKE 239 (314)
T ss_pred CCCCcEEECCCccHHHHHHHHHHHhC-CCEEEEEEeecCCCCeEEEeecccccCCCEEEEEeccccccHHHHHHHHHHHH
Confidence 56679999999999999999999997 89999999995 78888899999999999999999999999999999999999
Q ss_pred cCCCEEEEEEEcccccCCC
Q 018472 335 EGAREVYACCTHAVFRLDY 353 (355)
Q Consensus 335 ~GA~~V~v~~tHglfs~~a 353 (355)
+||++|+++||||+|+++|
T Consensus 240 ~GAk~V~a~~tH~vfs~~a 258 (314)
T COG0462 240 RGAKKVYAAATHGVFSGAA 258 (314)
T ss_pred CCCCeEEEEEEchhhChHH
Confidence 9999999999999999765
No 2
>PRK04923 ribose-phosphate pyrophosphokinase; Provisional
Probab=100.00 E-value=2.6e-73 Score=554.59 Aligned_cols=257 Identities=54% Similarity=0.863 Sum_probs=243.0
Q ss_pred CCCEEEEECCCCHHHHHHHHHHhCCceeceeeeecCCCceEEEeccCcCCCcEEEEccCCCCchhHHHHHHHHHHHHHhc
Q 018472 96 NNRIKLFSGTANPALSQEIACYMGVELGKINIKRFADGEIYVQLQESVRGCDVYLVQPTCPPANENLMELLIMIDACRRA 175 (355)
Q Consensus 96 ~~~~~ifsg~~~~~LA~~Ia~~Lg~~l~~~~~~~FpDGE~~v~i~~~VrG~dV~iiqs~~~p~nd~lmELll~idalr~~ 175 (355)
..+|+||+|+++++||++||+.||++++++++++|||||++|++.++|||+|||||||++.|+||++||||++++|||++
T Consensus 4 ~~~~~i~~g~~~~~La~~ia~~lg~~l~~~~~~~FpdGE~~v~i~~~v~g~~V~iiqs~~~p~nd~lmeLl~~~~alr~~ 83 (319)
T PRK04923 4 QRNLLVFSGNANKPLAQSICKELGVRMGKALVTRFSDGEVQVEIEESVRRQEVFVIQPTCAPSAENLMELLVLIDALKRA 83 (319)
T ss_pred CCceEEEECCCCHHHHHHHHHHhCCceeeeEEEECCCCCEEEEECCCcCCCeEEEEecCCCCCchHHHHHHHHHHHHHHc
Confidence 45699999999999999999999999999999999999999999999999999999999989999999999999999999
Q ss_pred CCCeEEEEeeCccccccccccC-CCCcchHHHHHHHHHHhCCCEEEEccCCchhhhcccCCccccccchHHHHHHHHhhc
Q 018472 176 SAKNITAVIPYFGYARADRKTQ-GRESIAAKLVANLITEAGADRVLACDLHSGQSMGYFDIPVDHVYCQPVILDYLASKT 254 (355)
Q Consensus 176 ~a~~ItlViPY~~YaRqDr~~~-~ge~isak~vA~lL~~~G~d~VitvDlHs~~~~~~F~ip~~~l~a~~~La~~L~~~~ 254 (355)
||++|++|+|||||+||||++. +|||+++|.+|+||+.+|+|+|+++|+|+.++++||++|++|+++.+.+++||.+.+
T Consensus 84 ~a~~i~~ViPYl~YaRQDr~~~~~~~~isak~va~ll~~~g~d~vitvD~H~~~~~~~f~~p~~~l~~~~~l~~~i~~~~ 163 (319)
T PRK04923 84 SAASVTAVIPYFGYSRQDRRMRSSRVPITAKVAAKMISAMGADRVLTVDLHADQIQGFFDVPVDNVYASPLLLADIWRAY 163 (319)
T ss_pred CCcEEEEEeeccccccccccccCCCCCccHHHHHHHHHhcCCCEEEEEeCChHHHHhhcCCCceeeeChHHHHHHHHHhc
Confidence 9999999999999999999995 578999999999999999999999999999999999999999999999999997653
Q ss_pred CCCCCeEEEecCCChhHHHHHHHHHcCCCCEEEEEEeecCCCeeEEEeeecCCCCCEEEEEeCcccchHHHHHHHHHHHH
Q 018472 255 VSSNDLVVVSPDVGGVARARAFAKKLSDAPLAIVDKRRHGHNVAEVMNLIGDVKGKVAVMVDDMIDTAGTIAKGAALLHQ 334 (355)
Q Consensus 255 ~~~~~~vVVspd~Ggv~rA~~lA~~L~~~p~~~v~K~R~~~~~~e~~~l~gdVkGK~VLIVDDIIdTG~Tl~~aa~~Lk~ 334 (355)
+.++++||+||.||++||+.+|+.|+..++.+++|+|...+..+.+.+.|+++||+|||||||||||+||.++++.||+
T Consensus 164 -~~~~~vVVsPD~Ga~~rA~~lA~~L~~~~~~~~~K~R~~~~~~~~~~~~gdv~Gr~viIVDDIidTG~Tl~~aa~~Lk~ 242 (319)
T PRK04923 164 -GTDNLIVVSPDVGGVVRARAVAKRLDDADLAIIDKRRPRANVATVMNIIGDVQGKTCVLVDDLVDTAGTLCAAAAALKQ 242 (319)
T ss_pred -CCCCCEEEEECCchHHHHHHHHHHcCCCCEEEeccccCCCCceEEEecccCCCCCEEEEEecccCchHHHHHHHHHHHH
Confidence 3578999999999999999999999547999999999766555566788999999999999999999999999999999
Q ss_pred cCCCEEEEEEEcccccCCC
Q 018472 335 EGAREVYACCTHAVFRLDY 353 (355)
Q Consensus 335 ~GA~~V~v~~tHglfs~~a 353 (355)
+||++|+++||||+|+++|
T Consensus 243 ~GA~~V~~~~THgvfs~~a 261 (319)
T PRK04923 243 RGALKVVAYITHPVLSGPA 261 (319)
T ss_pred CCCCEEEEEEECcccCchH
Confidence 9999999999999999976
No 3
>PRK02269 ribose-phosphate pyrophosphokinase; Provisional
Probab=100.00 E-value=6.9e-73 Score=552.26 Aligned_cols=256 Identities=52% Similarity=0.886 Sum_probs=242.9
Q ss_pred CCEEEEECCCCHHHHHHHHHHhCCceeceeeeecCCCceEEEeccCcCCCcEEEEccCCCCchhHHHHHHHHHHHHHhcC
Q 018472 97 NRIKLFSGTANPALSQEIACYMGVELGKINIKRFADGEIYVQLQESVRGCDVYLVQPTCPPANENLMELLIMIDACRRAS 176 (355)
Q Consensus 97 ~~~~ifsg~~~~~LA~~Ia~~Lg~~l~~~~~~~FpDGE~~v~i~~~VrG~dV~iiqs~~~p~nd~lmELll~idalr~~~ 176 (355)
++|+||+|+++++||++||++||++++++++++|||||++|++.++|||+|||||||++.|+||++||||++++|||++|
T Consensus 4 ~~~~i~~~~~~~~la~~ia~~lg~~l~~~~~~~FpdGE~~v~i~~~vrg~dV~iv~s~~~~~nd~lmelll~~~alr~~~ 83 (320)
T PRK02269 4 SDLKLFALSSNKELAEKVAQEIGIELGKSSVRQFSDGEIQVNIEESIRGHHVFILQSTSSPVNDNLMEILIMVDALKRAS 83 (320)
T ss_pred CCeEEEECCCCHHHHHHHHHHhCCceeeeEEEECCCCCEEEEECCCCCCCEEEEEecCCCCccchHHHHHHHHHHHHHhC
Confidence 45999999999999999999999999999999999999999999999999999999999899999999999999999999
Q ss_pred CCeEEEEeeCccccccccccCCCCcchHHHHHHHHHHhCCCEEEEccCCchhhhcccCCccccccchHHHHHHHHhhcCC
Q 018472 177 AKNITAVIPYFGYARADRKTQGRESIAAKLVANLITEAGADRVLACDLHSGQSMGYFDIPVDHVYCQPVILDYLASKTVS 256 (355)
Q Consensus 177 a~~ItlViPY~~YaRqDr~~~~ge~isak~vA~lL~~~G~d~VitvDlHs~~~~~~F~ip~~~l~a~~~La~~L~~~~~~ 256 (355)
|++||+|+|||||+||||++++|||+++|++|+||+.+|+|+|+++|+|+.++++||++|++++++.+.+++|+.++.++
T Consensus 84 a~~i~~V~PYl~YaRQDr~~~~~e~isak~~a~ll~~~g~d~vit~D~H~~~~~~~f~~p~~~l~~~p~l~~~i~~~~~~ 163 (320)
T PRK02269 84 AESINVVMPYYGYARQDRKARSREPITSKLVANMLEVAGVDRLLTVDLHAAQIQGFFDIPVDHLMGAPLIADYFDRRGLV 163 (320)
T ss_pred CCeEEEEEeccccchhhcccCCCCCchHHHHHHHHhhcCCCEEEEECCChHHHhccccCCchhhhhHHHHHHHHHHhCCC
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999876445
Q ss_pred CCCeEEEecCCChhHHHHHHHHHcCCCCEEEEEEeecCC--CeeEEEeeecCCCCCEEEEEeCcccchHHHHHHHHHHHH
Q 018472 257 SNDLVVVSPDVGGVARARAFAKKLSDAPLAIVDKRRHGH--NVAEVMNLIGDVKGKVAVMVDDMIDTAGTIAKGAALLHQ 334 (355)
Q Consensus 257 ~~~~vVVspd~Ggv~rA~~lA~~L~~~p~~~v~K~R~~~--~~~e~~~l~gdVkGK~VLIVDDIIdTG~Tl~~aa~~Lk~ 334 (355)
.++++||+||.||++||+.+|+.|+ .|+.+++|+|... +..+.+.+.|+++||+|||||||+|||+|+.++++.|++
T Consensus 164 ~~~~vvVsPd~G~~~~A~~lA~~lg-~~~~~~~k~r~~~~~~~~~~~~~~gdv~Gr~viIVDDIidTG~Tl~~aa~~Lk~ 242 (320)
T PRK02269 164 GDDVVVVSPDHGGVTRARKLAQFLK-TPIAIIDKRRSVDKMNTSEVMNIIGNVKGKKCILIDDMIDTAGTICHAADALAE 242 (320)
T ss_pred CCCcEEEEECccHHHHHHHHHHHhC-CCEEEEEecccCCCCceeEEEEeccccCCCEEEEEeeecCcHHHHHHHHHHHHH
Confidence 5789999999999999999999997 8999999988632 344456778999999999999999999999999999999
Q ss_pred cCCCEEEEEEEcccccCCC
Q 018472 335 EGAREVYACCTHAVFRLDY 353 (355)
Q Consensus 335 ~GA~~V~v~~tHglfs~~a 353 (355)
+||++|+++||||+|+++|
T Consensus 243 ~GA~~V~~~~tHglf~~~a 261 (320)
T PRK02269 243 AGATEVYASCTHPVLSGPA 261 (320)
T ss_pred CCCCEEEEEEECcccCchH
Confidence 9999999999999999986
No 4
>PRK00553 ribose-phosphate pyrophosphokinase; Provisional
Probab=100.00 E-value=1.3e-72 Score=552.35 Aligned_cols=257 Identities=50% Similarity=0.779 Sum_probs=245.6
Q ss_pred CCCCEEEEECCCCHHHHHHHHHHhCCceeceeeeecCCCceEEEeccCcCCCcEEEEccCCCCchhHHHHHHHHHHHHHh
Q 018472 95 TNNRIKLFSGTANPALSQEIACYMGVELGKINIKRFADGEIYVQLQESVRGCDVYLVQPTCPPANENLMELLIMIDACRR 174 (355)
Q Consensus 95 ~~~~~~ifsg~~~~~LA~~Ia~~Lg~~l~~~~~~~FpDGE~~v~i~~~VrG~dV~iiqs~~~p~nd~lmELll~idalr~ 174 (355)
.+++++||+|++|++||++||+.||++++++++++|||||++|++.++|||+|||||||++.|+||++||||++++|||+
T Consensus 6 ~~~~~~i~~~~~~~~La~~ia~~lg~~l~~~~~~~FpdGE~~v~i~~~vrg~dV~ivqs~~~p~nd~l~eLll~~~alr~ 85 (332)
T PRK00553 6 DKSNHVIFSLSKAKKLVDSICRKLSMKPGEIVIQKFADGETYIRFDESVRNKDVVIFQSTCSPVNDSLMELLIAIDALKR 85 (332)
T ss_pred CCCCeEEEECCCCHHHHHHHHHHhCCceeeeEEEECCCCCEEEEECCCCCCCEEEEEcCCCCCCchHHHHHHHHHHHHHH
Confidence 46789999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred cCCCeEEEEeeCccccccccccCCCCcchHHHHHHHHHHhCCCEEEEccCCchhhhcccCCccccccchHHHHHHHHhhc
Q 018472 175 ASAKNITAVIPYFGYARADRKTQGRESIAAKLVANLITEAGADRVLACDLHSGQSMGYFDIPVDHVYCQPVILDYLASKT 254 (355)
Q Consensus 175 ~~a~~ItlViPY~~YaRqDr~~~~ge~isak~vA~lL~~~G~d~VitvDlHs~~~~~~F~ip~~~l~a~~~La~~L~~~~ 254 (355)
+||++||+|+|||||+||||++++|||+++|++|+||+.+|+|+|+++|+|+.++++||++|++|+++.+.+++|+.+..
T Consensus 86 ~~a~~i~~ViPYl~YaRQDr~~~~~e~isak~vA~ll~~~g~d~vit~DlH~~~i~~~F~ipv~~l~a~~~~~~~~~~~~ 165 (332)
T PRK00553 86 GSAKSITAILPYYGYARQDRKTAGREPITSKLVADLLTKAGVTRVTLTDIHSDQTQGFFDIPVDILRTYHVFLSRVLELL 165 (332)
T ss_pred cCCCeEEEEeeccccchhhcccCCCCCccHHHHHHHHHhcCCCEEEEEeCChHHHHhhcCCCcceeechHHHHHHHHHhc
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999997642
Q ss_pred CCCCCeEEEecCCChhHHHHHHHHHcCCCCEEEEEEeecCCCeeEEEeeecCCCCCEEEEEeCcccchHHHHHHHHHHHH
Q 018472 255 VSSNDLVVVSPDVGGVARARAFAKKLSDAPLAIVDKRRHGHNVAEVMNLIGDVKGKVAVMVDDMIDTAGTIAKGAALLHQ 334 (355)
Q Consensus 255 ~~~~~~vVVspd~Ggv~rA~~lA~~L~~~p~~~v~K~R~~~~~~e~~~l~gdVkGK~VLIVDDIIdTG~Tl~~aa~~Lk~ 334 (355)
+.++++||+||.||++||+.+|+.++ .++.+++|+|...+..+.+.+.|+++||+|||||||+|||+|+.++++.|++
T Consensus 166 -~~~~~vvVsPD~gg~~rA~~lA~~lg-~~~~vi~K~r~~~~~~~~~~~~gdv~Gk~VIIVDDIi~TG~Tl~~aa~~Lk~ 243 (332)
T PRK00553 166 -GKKDLVVVSPDYGGVKRARLIAESLE-LPLAIIDKRRPKHNVAESINVLGEVKNKNCLIVDDMIDTGGTVIAAAKLLKK 243 (332)
T ss_pred -CCCCeEEEEECCCcHHHHHHHHHHhC-CCEEEEEEecCCcceEeeEEeeccCCCCEEEEEeccccchHHHHHHHHHHHH
Confidence 35789999999999999999999997 9999999999776666666778999999999999999999999999999999
Q ss_pred cCCCEEEEEEEcccccCCC
Q 018472 335 EGAREVYACCTHAVFRLDY 353 (355)
Q Consensus 335 ~GA~~V~v~~tHglfs~~a 353 (355)
+||++|+++||||+|+++|
T Consensus 244 ~GA~~V~~~atHglf~~~a 262 (332)
T PRK00553 244 QKAKKVCVMATHGLFNKNA 262 (332)
T ss_pred cCCcEEEEEEEeeecCchH
Confidence 9999999999999999986
No 5
>PRK02812 ribose-phosphate pyrophosphokinase; Provisional
Probab=100.00 E-value=2.1e-72 Score=550.26 Aligned_cols=272 Identities=72% Similarity=1.139 Sum_probs=255.2
Q ss_pred hhhhhhhhhhhhcccCCCCEEEEECCCCHHHHHHHHHHhCCceeceeeeecCCCceEEEeccCcCCCcEEEEccCCCCch
Q 018472 80 KFLETARMEKTVNRTTNNRIKLFSGTANPALSQEIACYMGVELGKINIKRFADGEIYVQLQESVRGCDVYLVQPTCPPAN 159 (355)
Q Consensus 80 ~~~~~~~~~~~~~~~~~~~~~ifsg~~~~~LA~~Ia~~Lg~~l~~~~~~~FpDGE~~v~i~~~VrG~dV~iiqs~~~p~n 159 (355)
.|.+++|.++.-.-++.++|+||+|+++++||++||++||++++++++++|||||++|++.++|||+|||||||++.|+|
T Consensus 3 ~~~~~~~~~~~~~~~~~~~~~i~~g~~~~~la~~ia~~lg~~l~~~~~~~FpDGE~~v~i~~~vrg~~V~ivqs~~~p~n 82 (330)
T PRK02812 3 SFATAARAEQLPLLSDNNRLRLFSGSSNPALAQEVARYLGMDLGPMIRKRFADGELYVQIQESIRGCDVYLIQPTCAPVN 82 (330)
T ss_pred cccccccCCCCccccCCCCEEEEECCCCHHHHHHHHHHhCCCceeeEEEECCCCCEEEEeCCCCCCCEEEEECCCCCCcc
Confidence 35566777776666677889999999999999999999999999999999999999999999999999999999999999
Q ss_pred hHHHHHHHHHHHHHhcCCCeEEEEeeCccccccccccCCCCcchHHHHHHHHHHhCCCEEEEccCCchhhhcccCCcccc
Q 018472 160 ENLMELLIMIDACRRASAKNITAVIPYFGYARADRKTQGRESIAAKLVANLITEAGADRVLACDLHSGQSMGYFDIPVDH 239 (355)
Q Consensus 160 d~lmELll~idalr~~~a~~ItlViPY~~YaRqDr~~~~ge~isak~vA~lL~~~G~d~VitvDlHs~~~~~~F~ip~~~ 239 (355)
|++||||+|++|||++||++||+|+|||||+||||++++|||+++|++|+||+.+|+|+|+++|+|+.++++||++|++|
T Consensus 83 d~l~eLll~~~alr~~ga~ri~~ViPYl~YaRQDr~~~~~e~isak~vA~lL~~~g~d~vitvDlH~~~~~~fF~ipv~n 162 (330)
T PRK02812 83 DHLMELLIMVDACRRASARQITAVIPYYGYARADRKTAGRESITAKLVANLITKAGADRVLAMDLHSAQIQGYFDIPCDH 162 (330)
T ss_pred HHHHHHHHHHHHHHHhCCceEEEEEecccccccccccCCCCCchHHHHHHHHHhcCCCEEEEEECCchHHcCccCCCcee
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred ccchHHHHHHHHhhcCCCCCeEEEecCCChhHHHHHHHHHcCCCCEEEEEEeecCCCeeEEEeeecCCCCCEEEEEeCcc
Q 018472 240 VYCQPVILDYLASKTVSSNDLVVVSPDVGGVARARAFAKKLSDAPLAIVDKRRHGHNVAEVMNLIGDVKGKVAVMVDDMI 319 (355)
Q Consensus 240 l~a~~~La~~L~~~~~~~~~~vVVspd~Ggv~rA~~lA~~L~~~p~~~v~K~R~~~~~~e~~~l~gdVkGK~VLIVDDII 319 (355)
+++.+.+++||.+. +.++++||+||.||.+||+.+++.|++.++.+++|+|...+..+.+.+.|+++||+|||||||+
T Consensus 163 l~~~~~l~~~i~~~--~~~~~vvVsPD~gg~~ra~~~A~~L~~~~~~~~~k~R~~~~~~~~~~~~~~v~g~~viiVDDii 240 (330)
T PRK02812 163 VYGSPVLLDYLASK--NLEDIVVVSPDVGGVARARAFAKKLNDAPLAIIDKRRQAHNVAEVLNVIGDVKGKTAILVDDMI 240 (330)
T ss_pred eeChHHHHHHHHhc--CCCCeEEEEECCccHHHHHHHHHHhCCCCEEEEEeeccCCceeeeEeccccCCCCEEEEEcccc
Confidence 99999999999765 3578999999999999999999999557999999999766655556778899999999999999
Q ss_pred cchHHHHHHHHHHHHcCCCEEEEEEEcccccCCC
Q 018472 320 DTAGTIAKGAALLHQEGAREVYACCTHAVFRLDY 353 (355)
Q Consensus 320 dTG~Tl~~aa~~Lk~~GA~~V~v~~tHglfs~~a 353 (355)
+||+|+.++++.|+++||++|++++|||+|++++
T Consensus 241 ~TG~T~~~a~~~L~~~Ga~~v~~~~tH~v~s~~a 274 (330)
T PRK02812 241 DTGGTICEGARLLRKEGAKQVYACATHAVFSPPA 274 (330)
T ss_pred CcHHHHHHHHHHHhccCCCeEEEEEEcccCChHH
Confidence 9999999999999999999999999999999875
No 6
>PRK02458 ribose-phosphate pyrophosphokinase; Provisional
Probab=100.00 E-value=3.9e-72 Score=547.39 Aligned_cols=257 Identities=47% Similarity=0.791 Sum_probs=242.7
Q ss_pred CCCCEEEEECCCCHHHHHHHHHHhCCceeceeeeecCCCceEEEeccCcCCCcEEEEccCCCCchhHHHHHHHHHHHHHh
Q 018472 95 TNNRIKLFSGTANPALSQEIACYMGVELGKINIKRFADGEIYVQLQESVRGCDVYLVQPTCPPANENLMELLIMIDACRR 174 (355)
Q Consensus 95 ~~~~~~ifsg~~~~~LA~~Ia~~Lg~~l~~~~~~~FpDGE~~v~i~~~VrG~dV~iiqs~~~p~nd~lmELll~idalr~ 174 (355)
++++|+||+|++|++||++||+.||++++++++++|||||+++++.++|||+||||||+++.|+||+|||||++++|||+
T Consensus 6 ~~~~~~i~~~~~~~~la~~ia~~lg~~l~~~~~~~FpdGE~~v~i~~~v~g~dV~ii~s~~~~~nd~l~eLll~~~alr~ 85 (323)
T PRK02458 6 ADKQIKLFSLNSNLEIAEKIAQAAGVPLGKLSSRQFSDGEIMINIEESVRGDDIYIIQSTSFPVNDHLWELLIMIDACKR 85 (323)
T ss_pred CCCCeEEEECCCCHHHHHHHHHHhCCceeeeEEEECCCCCEEEEecCCcCCCeEEEEecCCCCCchHHHHHHHHHHHHHH
Confidence 56789999999999999999999999999999999999999999999999999999999998999999999999999999
Q ss_pred cCCCeEEEEeeCccccccccccCCCCcchHHHHHHHHHHhCCCEEEEccCCchhhhcccCCccccccchHHHHHHHHhhc
Q 018472 175 ASAKNITAVIPYFGYARADRKTQGRESIAAKLVANLITEAGADRVLACDLHSGQSMGYFDIPVDHVYCQPVILDYLASKT 254 (355)
Q Consensus 175 ~~a~~ItlViPY~~YaRqDr~~~~ge~isak~vA~lL~~~G~d~VitvDlHs~~~~~~F~ip~~~l~a~~~La~~L~~~~ 254 (355)
+||++|++|+|||||+||||++++|||+++|.+|+||+.+|+|+|+++|+|+.++++||++|++|+++.+++++|+.+..
T Consensus 86 ~~a~~i~lViPYl~YaRQDr~~~~ge~isak~~a~lL~~~g~d~vitvD~H~~~i~~~F~~p~~nl~~~p~~~~~l~~~~ 165 (323)
T PRK02458 86 ASANTVNVVLPYFGYARQDRIAKPREPITAKLVANMLVKAGVDRVLTLDLHAVQVQGFFDIPVDNLFTVPLFAKHYCKKG 165 (323)
T ss_pred cCCceEEEEEeccccchhhcccCCCCCchHHHHHHHHhhcCCCeEEEEecCcHHhhccccCCceEEEEHHHHHHHHHHhC
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999997764
Q ss_pred CCCCCeEEEecCCChhHHHHHHHHHcCCCCEEEEEEeecCCCeeEEEeeecCCCCCEEEEEeCcccchHHHHHHHHHHHH
Q 018472 255 VSSNDLVVVSPDVGGVARARAFAKKLSDAPLAIVDKRRHGHNVAEVMNLIGDVKGKVAVMVDDMIDTAGTIAKGAALLHQ 334 (355)
Q Consensus 255 ~~~~~~vVVspd~Ggv~rA~~lA~~L~~~p~~~v~K~R~~~~~~e~~~l~gdVkGK~VLIVDDIIdTG~Tl~~aa~~Lk~ 334 (355)
++.++++||+||.||++||+.+++.|+ .++.+++|+|..... +...+.|+|+||+|||||||||||+|+.++++.|++
T Consensus 166 ~~~~~~vvV~pd~Ga~~~A~~la~~L~-~~~~~~~~~r~~~~~-~~~~i~gdV~gk~viIVDDIidTG~Tl~~aa~~Lk~ 243 (323)
T PRK02458 166 LSGSDVVVVSPKNSGIKRARSLAEYLD-APIAIIDYAQDDSER-EEGYIIGDVAGKKAILIDDILNTGKTFAEAAKIVER 243 (323)
T ss_pred CCCCceEEEEECCChHHHHHHHHHHhC-CCEEEEEEecCCCcc-eeeccccccCCCEEEEEcceeCcHHHHHHHHHHHHh
Confidence 455789999999999999999999997 899999987754332 233567899999999999999999999999999999
Q ss_pred cCCCEEEEEEEcccccCCC
Q 018472 335 EGAREVYACCTHAVFRLDY 353 (355)
Q Consensus 335 ~GA~~V~v~~tHglfs~~a 353 (355)
+||++|+++||||+|+++|
T Consensus 244 ~GA~~V~~~~tHgif~~~a 262 (323)
T PRK02458 244 EGATEIYAVASHGLFAGGA 262 (323)
T ss_pred CCCCcEEEEEEChhcCchH
Confidence 9999999999999999986
No 7
>PTZ00145 phosphoribosylpyrophosphate synthetase; Provisional
Probab=100.00 E-value=4.1e-72 Score=561.39 Aligned_cols=255 Identities=52% Similarity=0.831 Sum_probs=243.6
Q ss_pred CCEEEEECCCCHHHHHHHHHHhCCceeceeeeecCCCceEEEeccCcCCCcEEEEccCCCCchhHHHHHHHHHHHHHhcC
Q 018472 97 NRIKLFSGTANPALSQEIACYMGVELGKINIKRFADGEIYVQLQESVRGCDVYLVQPTCPPANENLMELLIMIDACRRAS 176 (355)
Q Consensus 97 ~~~~ifsg~~~~~LA~~Ia~~Lg~~l~~~~~~~FpDGE~~v~i~~~VrG~dV~iiqs~~~p~nd~lmELll~idalr~~~ 176 (355)
++|+||+|+++++||++||+.||++++++++++|||||++|++.++|||+|||||||++.|+||+|||||++++|||++|
T Consensus 118 ~~m~I~sgs~~~~LA~~IA~~Lg~~l~~~~~~rFpDGE~~Vri~e~VrG~dV~IVqS~~~pvNd~LmELLllidAlr~ag 197 (439)
T PTZ00145 118 ENAILFSGSSNPLLSKNIADHLGTILGRVHLKRFADGEVSMQFLESIRGKDVYIIQPTCPPVNENLIELLLMISTCRRAS 197 (439)
T ss_pred CCeEEEECCCCHHHHHHHHHHhCCCceeeEEEECCCCCEEEEECCCcCCCeEEEEecCCCCCcHHHHHHHHHHHHHHHhc
Confidence 56999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCeEEEEeeCccccccccccCCCCcchHHHHHHHHHHhCCCEEEEccCCchhhhcccC--CccccccchHHHHHHHHhhc
Q 018472 177 AKNITAVIPYFGYARADRKTQGRESIAAKLVANLITEAGADRVLACDLHSGQSMGYFD--IPVDHVYCQPVILDYLASKT 254 (355)
Q Consensus 177 a~~ItlViPY~~YaRqDr~~~~ge~isak~vA~lL~~~G~d~VitvDlHs~~~~~~F~--ip~~~l~a~~~La~~L~~~~ 254 (355)
|++||+|+|||||+||||++.+|||+++|++|+||+.+|+|+|++||+|+.++++||+ +|++++.+.+.+++|+.+.
T Consensus 198 AkrItlViPYl~YaRQDR~~~~gepIsak~vA~lL~~~G~d~VitvDlHs~~i~~fF~~~iPvdnl~a~~~~a~~i~~~- 276 (439)
T PTZ00145 198 AKKITAVIPYYGYARQDRKLSSRVPISAADVARMIEAMGVDRVVAIDLHSGQIQGFFGPRVPVDNLEAQLIGLDYFTKK- 276 (439)
T ss_pred cCeEEEEeecccchheecccCCCCChhHHHHHHHHHHcCCCeEEEEecChHHHHhhcCCCcccccccccHHHHHHHhhc-
Confidence 9999999999999999999999999999999999999999999999999999999996 9999999999999999764
Q ss_pred CCCCCeEEEecCCChhHHHHHHHHHcCC-----CCEEEEEEeecCCCeeEEEeeecCCCCCEEEEEeCcccchHHHHHHH
Q 018472 255 VSSNDLVVVSPDVGGVARARAFAKKLSD-----APLAIVDKRRHGHNVAEVMNLIGDVKGKVAVMVDDMIDTAGTIAKGA 329 (355)
Q Consensus 255 ~~~~~~vVVspd~Ggv~rA~~lA~~L~~-----~p~~~v~K~R~~~~~~e~~~l~gdVkGK~VLIVDDIIdTG~Tl~~aa 329 (355)
+..+++||+||.||.+||+.+++.|+. +++.+++|+|...+..+.+.+.|||+||+|||||||||||+|+.+++
T Consensus 277 -~l~~pVVVsPD~Ga~~RAr~~A~~L~~~~~~~~~~avl~K~R~~~~~v~~~~lvgdV~Gk~vIIVDDIIdTG~Tl~~aa 355 (439)
T PTZ00145 277 -DLYKPVIVSPDAGGVYRARKFQDGLNHRGISDCGIAMLIKQRTKPNEIEKMDLVGNVYDSDVIIVDDMIDTSGTLCEAA 355 (439)
T ss_pred -CCCccEEEccCcchHHHHHHHHHHhccccccCCCEEEEEeecCCCCceEEEeccCCCCCCEEEEEcceeCcHHHHHHHH
Confidence 346889999999999999999999962 68999999998777666778889999999999999999999999999
Q ss_pred HHHHHcCCCEEEEEEEcccccCCC
Q 018472 330 ALLHQEGAREVYACCTHAVFRLDY 353 (355)
Q Consensus 330 ~~Lk~~GA~~V~v~~tHglfs~~a 353 (355)
+.|+++||++|+++||||+|+++|
T Consensus 356 ~~Lk~~GA~~V~~~~THglfs~~A 379 (439)
T PTZ00145 356 KQLKKHGARRVFAFATHGLFSGPA 379 (439)
T ss_pred HHHHHcCCCEEEEEEEcccCChhH
Confidence 999999999999999999999976
No 8
>PRK07199 phosphoribosylpyrophosphate synthetase; Provisional
Probab=100.00 E-value=2e-70 Score=530.92 Aligned_cols=249 Identities=30% Similarity=0.462 Sum_probs=234.0
Q ss_pred EEEEECCCCHHHHHHHHHHhCCceeceeeeecCCCceEEEeccCcCCCcEEEEccCCCCchhHHHHHHHHHHHHHhcCCC
Q 018472 99 IKLFSGTANPALSQEIACYMGVELGKINIKRFADGEIYVQLQESVRGCDVYLVQPTCPPANENLMELLIMIDACRRASAK 178 (355)
Q Consensus 99 ~~ifsg~~~~~LA~~Ia~~Lg~~l~~~~~~~FpDGE~~v~i~~~VrG~dV~iiqs~~~p~nd~lmELll~idalr~~~a~ 178 (355)
++||+|++|++||++||+.||++++++++++|||||++|++.++|||+|||||||++.| ||++||||+|++|||++||+
T Consensus 3 ~~i~~~~~~~~la~~ia~~lg~~~~~~~~~~F~dGE~~v~i~~~v~g~~V~ivqs~~~~-n~~l~elll~~~alr~~~a~ 81 (301)
T PRK07199 3 PLLLALPGNEAAAGRLAAALGVEVGRIELHRFPDGESYVRLDSPVAGRTVVLVCSLDRP-DEKLLPLLFAAEAARELGAR 81 (301)
T ss_pred eEEEECCCCHHHHHHHHHHhCCceeeeEEEECCCCCEEEEECCCCCCCEEEEECCCCCC-cHHHHHHHHHHHHHHHcCCC
Confidence 67999999999999999999999999999999999999999999999999999999888 99999999999999999999
Q ss_pred eEEEEeeCccccccccccCCCCcchHHHHHHHHHHhCCCEEEEccCCc---hhhhcccCCccccccchHHHHHHHHhhcC
Q 018472 179 NITAVIPYFGYARADRKTQGRESIAAKLVANLITEAGADRVLACDLHS---GQSMGYFDIPVDHVYCQPVILDYLASKTV 255 (355)
Q Consensus 179 ~ItlViPY~~YaRqDr~~~~ge~isak~vA~lL~~~G~d~VitvDlHs---~~~~~~F~ip~~~l~a~~~La~~L~~~~~ 255 (355)
+||+|+|||||+||||++++|||+++|++|+||+. |+|+|+++|+|+ .++++||++|++++++.+.+++||.+.
T Consensus 82 ~i~~ViPY~~YaRqDr~~~~ge~isak~vA~ll~~-~~d~vit~DlH~~~~~~~~~~f~ip~~nl~~~~~la~~l~~~-- 158 (301)
T PRK07199 82 RVGLVAPYLAYMRQDIAFHPGEAISQRHFARLLSG-SFDRLVTVDPHLHRYPSLSEVYPIPAVVLSAAPAIAAWIRAH-- 158 (301)
T ss_pred eEEEEeecccccccccccCCCCCccHHHHHHHHHh-hcCeEEEEeccchhhHHhcCcccCCccccchHHHHHHHHHhc--
Confidence 99999999999999999999999999999999985 899999999998 578899999999999999999999764
Q ss_pred CCCCeEEEecCCChhHHHHHHHHHcCCCCEEEEEEeecCCCeeEEEee-ecCCCCCEEEEEeCcccchHHHHHHHHHHHH
Q 018472 256 SSNDLVVVSPDVGGVARARAFAKKLSDAPLAIVDKRRHGHNVAEVMNL-IGDVKGKVAVMVDDMIDTAGTIAKGAALLHQ 334 (355)
Q Consensus 256 ~~~~~vVVspd~Ggv~rA~~lA~~L~~~p~~~v~K~R~~~~~~e~~~l-~gdVkGK~VLIVDDIIdTG~Tl~~aa~~Lk~ 334 (355)
.++++||+||.||.+|++.+++.++ .++.+++|+|.+.+..+.... .++++||+|||||||||||+|+.++++.||+
T Consensus 159 -~~~~vVVsPd~g~~~~a~~la~~l~-~~~~~~~K~R~~~~~~~~~~~~~~~v~Gr~vIIVDDIidTG~Tl~~aa~~Lk~ 236 (301)
T PRK07199 159 -VPRPLLIGPDEESEQWVAAVAERAG-APHAVLRKTRHGDRDVEISLPDAAPWAGRTPVLVDDIVSTGRTLIEAARQLRA 236 (301)
T ss_pred -CCCcEEEEeCCChHHHHHHHHHHhC-CCEEEEEEEecCCCeEEEEeccCcccCCCEEEEEecccCcHHHHHHHHHHHHH
Confidence 3678999999999999999999997 899999999986654444333 3468999999999999999999999999999
Q ss_pred cCCCEEEEEEEcccccCCC
Q 018472 335 EGAREVYACCTHAVFRLDY 353 (355)
Q Consensus 335 ~GA~~V~v~~tHglfs~~a 353 (355)
+||++|+++||||+|+++|
T Consensus 237 ~GA~~V~~~~tHgvfs~~a 255 (301)
T PRK07199 237 AGAASPDCVVVHALFAGDA 255 (301)
T ss_pred CCCcEEEEEEEeeeCChHH
Confidence 9999999999999999986
No 9
>KOG1448 consensus Ribose-phosphate pyrophosphokinase [Nucleotide transport and metabolism; Amino acid transport and metabolism]
Probab=100.00 E-value=1.7e-71 Score=525.21 Aligned_cols=256 Identities=52% Similarity=0.870 Sum_probs=245.7
Q ss_pred CCEEEEECCCCHHHHHHHHHHhCCceeceeeeecCCCceEEEeccCcCCCcEEEEccCCCCchhHHHHHHHHHHHHHhcC
Q 018472 97 NRIKLFSGTANPALSQEIACYMGVELGKINIKRFADGEIYVQLQESVRGCDVYLVQPTCPPANENLMELLIMIDACRRAS 176 (355)
Q Consensus 97 ~~~~ifsg~~~~~LA~~Ia~~Lg~~l~~~~~~~FpDGE~~v~i~~~VrG~dV~iiqs~~~p~nd~lmELll~idalr~~~ 176 (355)
++++||+|+++|+||++||++||++++++++++|+|||++|++.++|||+|||++||.|.|.||+|||||+|++|||+++
T Consensus 2 ~~i~lf~g~shp~La~~I~~~lgi~l~~v~~kkf~nge~~v~i~esvR~~dV~iiqsgsg~ind~lmELLI~I~ac~~as 81 (316)
T KOG1448|consen 2 KNIKLFSGDSHPELAERIAARLGIELGKVNLKKFSNGETSVQIGESVRGEDVYIIQSGSGPINDNLMELLIMINACKRAS 81 (316)
T ss_pred CceEEEcCCCCHHHHHHHHHHhCCCcceeeeEEccCCcEEEecccccccCcEEEeccCCCcchHHHHHHHHHHHhcchhh
Confidence 46899999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCeEEEEeeCccccccccccCCCCcchHHHHHHHHHHhCCCEEEEccCCchhhhcccCCccccccchHHHHHHHHhhcCC
Q 018472 177 AKNITAVIPYFGYARADRKTQGRESIAAKLVANLITEAGADRVLACDLHSGQSMGYFDIPVDHVYCQPVILDYLASKTVS 256 (355)
Q Consensus 177 a~~ItlViPY~~YaRqDr~~~~ge~isak~vA~lL~~~G~d~VitvDlHs~~~~~~F~ip~~~l~a~~~La~~L~~~~~~ 256 (355)
+++||+|+|||||+||||+.+.+.+++||++|+||..+|+|+||++|+|..|.+|||++|++|+++.|.+.+|++++..+
T Consensus 82 a~~vTaViP~Fpyarq~~k~~~r~~i~aklVanlls~aG~dhvItmDlHa~Q~qgfF~ipVdnly~~p~~l~~ir~~~~~ 161 (316)
T KOG1448|consen 82 ASRVTAVIPYFPYARQDKKDKSRAPILAKLVANLLSSAGADHVITMDLHASQIQGFFDIPVDNLYAEPAVLNYIRENIPD 161 (316)
T ss_pred hheeEEeccCCccccchhhhhhhhhHHHHHHHhhhhccCCceEEEecccchhhCceeeccchhhccchHHHHHHHhhCCC
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999998888
Q ss_pred CCCeEEEecCCChhHHHHHHHHHcCCCCEEEEEEeecCCCeeE-EEeeecCCCCCEEEEEeCcccchHHHHHHHHHHHHc
Q 018472 257 SNDLVVVSPDVGGVARARAFAKKLSDAPLAIVDKRRHGHNVAE-VMNLIGDVKGKVAVMVDDMIDTAGTIAKGAALLHQE 335 (355)
Q Consensus 257 ~~~~vVVspd~Ggv~rA~~lA~~L~~~p~~~v~K~R~~~~~~e-~~~l~gdVkGK~VLIVDDIIdTG~Tl~~aa~~Lk~~ 335 (355)
+++.++|+||.||.+|++.+++.|+ ..+..+.|.|...+.+. .+.++|||+||.+||||||+||+||+.++++.|.+.
T Consensus 162 ~~~~vivSPdaGgaKR~~s~ad~l~-~~fali~ker~k~~~v~~~m~LVGDv~gkvailVDDm~dt~GTl~~aa~~L~~~ 240 (316)
T KOG1448|consen 162 SENAVIVSPDAGGAKRVTSLADRLN-LDFALIHKERRKANEVDIRMVLVGDVKGKVAILVDDMADTCGTLIKAADKLLEH 240 (316)
T ss_pred ccceEEECCCcchhhhhHHHHHhhc-chhhhhhhhhhcccccceEEEEEeccCCcEEEEecccccccchHHHHHHHHHhc
Confidence 9999999999999999999999997 77777777776555444 788999999999999999999999999999999999
Q ss_pred CCCEEEEEEEcccccCCC
Q 018472 336 GAREVYACCTHAVFRLDY 353 (355)
Q Consensus 336 GA~~V~v~~tHglfs~~a 353 (355)
||++||+++|||+|++++
T Consensus 241 GA~kV~a~~THgVfs~~a 258 (316)
T KOG1448|consen 241 GAKKVYAIVTHGVFSGPA 258 (316)
T ss_pred CCceEEEEEcceeccccH
Confidence 999999999999999986
No 10
>PRK03092 ribose-phosphate pyrophosphokinase; Provisional
Probab=100.00 E-value=2.4e-69 Score=523.99 Aligned_cols=243 Identities=47% Similarity=0.784 Sum_probs=229.8
Q ss_pred HHHHHHHHhCCceeceeeeecCCCceEEEeccCcCCCcEEEEccCCCCchhHHHHHHHHHHHHHhcCCCeEEEEeeCccc
Q 018472 110 LSQEIACYMGVELGKINIKRFADGEIYVQLQESVRGCDVYLVQPTCPPANENLMELLIMIDACRRASAKNITAVIPYFGY 189 (355)
Q Consensus 110 LA~~Ia~~Lg~~l~~~~~~~FpDGE~~v~i~~~VrG~dV~iiqs~~~p~nd~lmELll~idalr~~~a~~ItlViPY~~Y 189 (355)
||++||+.||++++++++++|||||++|++.++|||+|||||||++.|+||++||||++++|||++||++||+|+|||||
T Consensus 1 la~~ia~~l~~~l~~~~~~~F~DGE~~vri~~~v~g~~v~ii~s~~~p~nd~l~ell~~~~a~r~~~a~~i~~ViPYl~Y 80 (304)
T PRK03092 1 LAEEVAKELGVEVTPTTAYDFANGEIYVRFEESVRGCDAFVLQSHTAPINKWLMEQLIMIDALKRASAKRITVVLPFYPY 80 (304)
T ss_pred CHHHHHHHhCCceeeeEEEECCCCCEEEEECCCCCCCEEEEEeCCCCCCcHHHHHHHHHHHHHHHcCCCeEEEEEecccc
Confidence 68999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred cccccccCCCCcchHHHHHHHHHHhCCCEEEEccCCchhhhcccCCccccccchHHHHHHHHhhcCCCCCeEEEecCCCh
Q 018472 190 ARADRKTQGRESIAAKLVANLITEAGADRVLACDLHSGQSMGYFDIPVDHVYCQPVILDYLASKTVSSNDLVVVSPDVGG 269 (355)
Q Consensus 190 aRqDr~~~~ge~isak~vA~lL~~~G~d~VitvDlHs~~~~~~F~ip~~~l~a~~~La~~L~~~~~~~~~~vVVspd~Gg 269 (355)
+||||++++|||+++|++|+||+.+|+|+|+++|+|+.++++||++|++|+++.+.+++||.+.+ +.+++++|+||.||
T Consensus 81 aRQDr~~~~~e~isak~va~lL~~~g~d~vitvD~H~~~~~~~f~~p~~~l~~~~~la~~i~~~~-~~~~~vvVspd~Ga 159 (304)
T PRK03092 81 ARQDKKHRGREPISARLVADLFKTAGADRIMTVDLHTAQIQGFFDGPVDHLFAMPLLADYVRDKY-DLDNVTVVSPDAGR 159 (304)
T ss_pred cccccccCCCCCccHHHHHHHHHhcCCCeEEEEecChHHHHhhcCCCeeeEechHHHHHHHHHhc-CCCCcEEEEecCch
Confidence 99999999999999999999999999999999999999999999999999999999999997754 45789999999999
Q ss_pred hHHHHHHHHHcCCCCEEEEEEeecCC--CeeEEEeeecCCCCCEEEEEeCcccchHHHHHHHHHHHHcCCCEEEEEEEcc
Q 018472 270 VARARAFAKKLSDAPLAIVDKRRHGH--NVAEVMNLIGDVKGKVAVMVDDMIDTAGTIAKGAALLHQEGAREVYACCTHA 347 (355)
Q Consensus 270 v~rA~~lA~~L~~~p~~~v~K~R~~~--~~~e~~~l~gdVkGK~VLIVDDIIdTG~Tl~~aa~~Lk~~GA~~V~v~~tHg 347 (355)
++||+.+++.|+.+++.+++|+|+.. +..+...+.|+++||+|||||||+|||+|+.++++.|+++||++|+++||||
T Consensus 160 ~~~a~~la~~L~~~~~~~i~k~R~~~~~~~~~~~~~~~dv~gr~viIVDDIi~TG~Tl~~aa~~Lk~~Ga~~I~~~~tH~ 239 (304)
T PRK03092 160 VRVAEQWADRLGGAPLAFIHKTRDPTVPNQVVANRVVGDVEGRTCVLVDDMIDTGGTIAGAVRALKEAGAKDVIIAATHG 239 (304)
T ss_pred HHHHHHHHHHcCCCCEEEEEEEcccCCCCceEEEecCcCCCCCEEEEEccccCcHHHHHHHHHHHHhcCCCeEEEEEEcc
Confidence 99999999999647999999999643 3344557788999999999999999999999999999999999999999999
Q ss_pred cccCCC
Q 018472 348 VFRLDY 353 (355)
Q Consensus 348 lfs~~a 353 (355)
+|++++
T Consensus 240 v~~~~a 245 (304)
T PRK03092 240 VLSGPA 245 (304)
T ss_pred cCChHH
Confidence 999865
No 11
>PRK01259 ribose-phosphate pyrophosphokinase; Provisional
Probab=100.00 E-value=9.8e-69 Score=520.88 Aligned_cols=252 Identities=60% Similarity=0.966 Sum_probs=240.7
Q ss_pred EEEEECCCCHHHHHHHHHHhCCceeceeeeecCCCceEEEeccCcCCCcEEEEccCCCCchhHHHHHHHHHHHHHhcCCC
Q 018472 99 IKLFSGTANPALSQEIACYMGVELGKINIKRFADGEIYVQLQESVRGCDVYLVQPTCPPANENLMELLIMIDACRRASAK 178 (355)
Q Consensus 99 ~~ifsg~~~~~LA~~Ia~~Lg~~l~~~~~~~FpDGE~~v~i~~~VrG~dV~iiqs~~~p~nd~lmELll~idalr~~~a~ 178 (355)
|+||+|+++++||++||+.||++++++++++|||||+++++.++|+|+|||||||++.|+||++|||+++++|||++||+
T Consensus 1 ~~i~~~~~~~~la~~ia~~lg~~~~~~~~~~FpdGE~~vri~~~v~g~~V~ii~s~~~~~nd~l~eLll~~~alr~~ga~ 80 (309)
T PRK01259 1 MKLFAGNANPELAEKIAKYLGIPLGKASVGRFSDGEISVEINENVRGKDVFIIQSTCAPTNDNLMELLIMIDALKRASAG 80 (309)
T ss_pred CEEEECCCCHHHHHHHHHHhCCceeeeEEEECCCCCEEEEeCCCCCCCEEEEECCCCCCCcHHHHHHHHHHHHHHHcCCc
Confidence 57999999999999999999999999999999999999999999999999999999889999999999999999999999
Q ss_pred eEEEEeeCccccccccccCCCCcchHHHHHHHHHHhCCCEEEEccCCchhhhcccCCccccccchHHHHHHHHhhcCCCC
Q 018472 179 NITAVIPYFGYARADRKTQGRESIAAKLVANLITEAGADRVLACDLHSGQSMGYFDIPVDHVYCQPVILDYLASKTVSSN 258 (355)
Q Consensus 179 ~ItlViPY~~YaRqDr~~~~ge~isak~vA~lL~~~G~d~VitvDlHs~~~~~~F~ip~~~l~a~~~La~~L~~~~~~~~ 258 (355)
+||+|+|||||+||||++++|||+++|.+|+||+.+|+|+|+++|+|+.++++||++|++++.+.+.+++|+.++ +++
T Consensus 81 ~i~lViPYl~YsRQDr~~~~ge~isak~~a~lL~~~g~d~vitvD~H~~~~~~~f~~p~~~l~~~~~l~~~i~~~--~~~ 158 (309)
T PRK01259 81 RITAVIPYFGYARQDRKARSRVPITAKLVANLLETAGADRVLTMDLHADQIQGFFDIPVDNLYGSPILLEDIKQK--NLE 158 (309)
T ss_pred eEEEEeeccccchhhhhhccCCCchHHHHHHHHhhcCCCEEEEEcCChHHHcCcCCCCceeeeecHHHHHHHHhc--CCC
Confidence 999999999999999999999999999999999999999999999999999999999999999999999999775 357
Q ss_pred CeEEEecCCChhHHHHHHHHHcCCCCEEEEEEeecCCCeeEEEeeecCCCCCEEEEEeCcccchHHHHHHHHHHHHcCCC
Q 018472 259 DLVVVSPDVGGVARARAFAKKLSDAPLAIVDKRRHGHNVAEVMNLIGDVKGKVAVMVDDMIDTAGTIAKGAALLHQEGAR 338 (355)
Q Consensus 259 ~~vVVspd~Ggv~rA~~lA~~L~~~p~~~v~K~R~~~~~~e~~~l~gdVkGK~VLIVDDIIdTG~Tl~~aa~~Lk~~GA~ 338 (355)
+++||+||.||++||+.+++.|+ .++.+++|+|...+..+.+.+.|+++||+|+|||||+|||+|+.++++.|+++|++
T Consensus 159 ~~vvv~pd~Gg~~~A~~la~~Lg-~~~~~~~k~r~~~~~~~~~~~~~~~~g~~vliVDDii~TG~T~~~a~~~l~~~Ga~ 237 (309)
T PRK01259 159 NLVVVSPDVGGVVRARALAKRLD-ADLAIIDKRRPRANVSEVMNIIGDVEGRDCILVDDMIDTAGTLCKAAEALKERGAK 237 (309)
T ss_pred CcEEEEECCCcHHHHHHHHHHhC-CCEEEEEeecccceeEEEEeecccCCCCEEEEEecccCcHHHHHHHHHHHHccCCC
Confidence 88999999999999999999997 99999999987666555566778999999999999999999999999999999999
Q ss_pred EEEEEEEcccccCCC
Q 018472 339 EVYACCTHAVFRLDY 353 (355)
Q Consensus 339 ~V~v~~tHglfs~~a 353 (355)
+|++++|||+|++++
T Consensus 238 ~v~~~~tH~i~~~~a 252 (309)
T PRK01259 238 SVYAYATHPVLSGGA 252 (309)
T ss_pred EEEEEEEeeeCChHH
Confidence 999999999999875
No 12
>PLN02369 ribose-phosphate pyrophosphokinase
Probab=100.00 E-value=9.1e-68 Score=512.56 Aligned_cols=246 Identities=93% Similarity=1.366 Sum_probs=232.5
Q ss_pred HHHHHHHHHHhCCceeceeeeecCCCceEEEeccCcCCCcEEEEccCCCCchhHHHHHHHHHHHHHhcCCCeEEEEeeCc
Q 018472 108 PALSQEIACYMGVELGKINIKRFADGEIYVQLQESVRGCDVYLVQPTCPPANENLMELLIMIDACRRASAKNITAVIPYF 187 (355)
Q Consensus 108 ~~LA~~Ia~~Lg~~l~~~~~~~FpDGE~~v~i~~~VrG~dV~iiqs~~~p~nd~lmELll~idalr~~~a~~ItlViPY~ 187 (355)
++||++||+.||++++++++++|||||+++++.++|||+||||||++++|+||++||||++++|||++||++||+|+|||
T Consensus 1 ~~lA~~ia~~lg~~l~~~~~~~FpdGE~~v~i~~~v~g~~V~iv~s~~~p~nd~l~eLl~~~~a~r~~~a~~i~~ViPYl 80 (302)
T PLN02369 1 PALSQEIACYLGLELGKITIKRFADGEIYVQLQESVRGCDVFLVQPTCPPANENLMELLIMIDACRRASAKRITAVIPYF 80 (302)
T ss_pred ChHHHHHHHHhCCceeeeEEEECCCCCEEEEECCCCCCCeEEEEecCCCCcchHHHHHHHHHHHHHHcCCCeEEEEeecc
Confidence 37999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred cccccccccCCCCcchHHHHHHHHHHhCCCEEEEccCCchhhhcccCCccccccchHHHHHHHHhhcCCCCCeEEEecCC
Q 018472 188 GYARADRKTQGRESIAAKLVANLITEAGADRVLACDLHSGQSMGYFDIPVDHVYCQPVILDYLASKTVSSNDLVVVSPDV 267 (355)
Q Consensus 188 ~YaRqDr~~~~ge~isak~vA~lL~~~G~d~VitvDlHs~~~~~~F~ip~~~l~a~~~La~~L~~~~~~~~~~vVVspd~ 267 (355)
||+||||++++|||+++|.+|+||+.+|+|+|+++|+|+.++++||++|++++++.+.+++||.+.....+++++|+||.
T Consensus 81 ~YsRQDr~~~~~e~isak~va~lL~~~g~d~vi~vDlHs~~i~~~F~ip~~~l~~~~~~~~~i~~~~~~~~~~vvVspd~ 160 (302)
T PLN02369 81 GYARADRKTQGRESIAAKLVANLITEAGADRVLACDLHSGQSMGYFDIPVDHVYGQPVILDYLASKTISSPDLVVVSPDV 160 (302)
T ss_pred cccccccccCCCCCchHHHHHHHHHhcCCCEEEEEECCchHHhhccCCceecccchHHHHHHHHHhCCCCCceEEEEECc
Confidence 99999999999999999999999999999999999999999999999999999999999999976533346789999999
Q ss_pred ChhHHHHHHHHHcCCCCEEEEEEeecCCCeeEEEeeecCCCCCEEEEEeCcccchHHHHHHHHHHHHcCCCEEEEEEEcc
Q 018472 268 GGVARARAFAKKLSDAPLAIVDKRRHGHNVAEVMNLIGDVKGKVAVMVDDMIDTAGTIAKGAALLHQEGAREVYACCTHA 347 (355)
Q Consensus 268 Ggv~rA~~lA~~L~~~p~~~v~K~R~~~~~~e~~~l~gdVkGK~VLIVDDIIdTG~Tl~~aa~~Lk~~GA~~V~v~~tHg 347 (355)
||++||+.+++.++++++.+++|+|.+.+..+.+.+.|+++||+|||||||++||+|+.++++.|++.||++|++++|||
T Consensus 161 gg~~~a~~~a~~l~~~~~~~l~k~R~~~~~~~~~~~~~~v~g~~viivDDii~TG~Tl~~a~~~l~~~Ga~~v~~~~tH~ 240 (302)
T PLN02369 161 GGVARARAFAKKLSDAPLAIVDKRRQGHNVAEVMNLIGDVKGKVAIMVDDMIDTAGTITKGAALLHQEGAREVYACATHA 240 (302)
T ss_pred ChHHHHHHHHHHcCCCCEEEEEEecCCcceeeeEecCCCCCCCEEEEEcCcccchHHHHHHHHHHHhCCCCEEEEEEEee
Confidence 99999999999995489999999998766555567788999999999999999999999999999999999999999999
Q ss_pred cccCCC
Q 018472 348 VFRLDY 353 (355)
Q Consensus 348 lfs~~a 353 (355)
+|++++
T Consensus 241 v~~~~a 246 (302)
T PLN02369 241 VFSPPA 246 (302)
T ss_pred eeCHHH
Confidence 999864
No 13
>PLN02297 ribose-phosphate pyrophosphokinase
Probab=100.00 E-value=1.8e-67 Score=513.49 Aligned_cols=252 Identities=26% Similarity=0.392 Sum_probs=229.6
Q ss_pred CCCCEEEEECCCCHHHHHHHHHHh-CCceeceeeeecCCCceEEEe--ccCcCCCcEEEEccCCCCchhHHHHHHHHHHH
Q 018472 95 TNNRIKLFSGTANPALSQEIACYM-GVELGKINIKRFADGEIYVQL--QESVRGCDVYLVQPTCPPANENLMELLIMIDA 171 (355)
Q Consensus 95 ~~~~~~ifsg~~~~~LA~~Ia~~L-g~~l~~~~~~~FpDGE~~v~i--~~~VrG~dV~iiqs~~~p~nd~lmELll~ida 171 (355)
..++|+||+|++|++||++||+.| |++++++++++|||||.++++ +++|||+|||||||++.| |+|||||++++|
T Consensus 13 ~~~~~~i~~g~~~~~LA~~ia~~l~g~~l~~~~~~~FpDGE~~v~v~~~~~vrg~~V~ivqs~~~p--d~lmELLl~~dA 90 (326)
T PLN02297 13 NKKQVHLFYCEETEELARKIAAESDAIELGSINWRKFPDGFPNLFINNAHGIRGQHVAFLASFSSP--AVIFEQLSVIYA 90 (326)
T ss_pred cCCCeEEEECCCCHHHHHHHHHHhCCCceeeeEEEECCCCCEEEEEcCCCCcCCCeEEEECCCCCC--hHHHHHHHHHHH
Confidence 367799999999999999999996 899999999999999655555 699999999999999876 789999999999
Q ss_pred HHhcCCCeEEEEeeCccccccccccCCCCcchHHHHHHHHHH-----hCCCEEEEccCCchhhhcccCCccccc--cchH
Q 018472 172 CRRASAKNITAVIPYFGYARADRKTQGRESIAAKLVANLITE-----AGADRVLACDLHSGQSMGYFDIPVDHV--YCQP 244 (355)
Q Consensus 172 lr~~~a~~ItlViPY~~YaRqDr~~~~ge~isak~vA~lL~~-----~G~d~VitvDlHs~~~~~~F~ip~~~l--~a~~ 244 (355)
||++||++||+|+|||||+||||++++|||+++|++|+||+. +|+|+|++||+|+.++++||+.|++++ ++.+
T Consensus 91 lr~~ga~~i~~ViPY~~YaRQDr~~~~ge~isak~vA~ll~~~~~~~~g~d~vitvDlH~~~~~~fF~~~~~~l~l~a~~ 170 (326)
T PLN02297 91 LPKLFVASFTLVLPFFPTGTSERVEREGDVATAFTLARILSNIPISRGGPTSLVIFDIHALQERFYFGDNVLPCFESGIP 170 (326)
T ss_pred HHHcCCCEEEEEeeCChhhcCCCCCCCCCCchHHHHHHHHhcccccccCCCEEEEEeCCChHHCCccCCcccchhhccHH
Confidence 999999999999999999999999999999999999999999 799999999999999999999988866 8999
Q ss_pred HHHHHHHhhcCCCCCeEEEecCCChhHHHHHHHHHcCCCCEEEEEEeecCCCeeEEEeeecCCCCCEEEEEeCcccchHH
Q 018472 245 VILDYLASKTVSSNDLVVVSPDVGGVARARAFAKKLSDAPLAIVDKRRHGHNVAEVMNLIGDVKGKVAVMVDDMIDTAGT 324 (355)
Q Consensus 245 ~La~~L~~~~~~~~~~vVVspd~Ggv~rA~~lA~~L~~~p~~~v~K~R~~~~~~e~~~l~gdVkGK~VLIVDDIIdTG~T 324 (355)
.+++||.+.. +.++++||+||.||.+|+..++ ++ .++++++|+|.+.. .......|+++||+|||||||+|||+|
T Consensus 171 ~l~~~i~~~~-~~~~~vvVsPD~Ga~~ra~~~a--~~-~~~~~~~K~R~g~~-~~~~~~~~dv~gr~vlIVDDIidTG~T 245 (326)
T PLN02297 171 LLKKRLQQLP-DSDNIVIAFPDDGAWKRFHKQF--EH-FPMVVCTKVREGDK-RIVRIKEGNPAGRHVVIVDDLVQSGGT 245 (326)
T ss_pred HHHHHHHhcc-ccCCcEEEecCccHHHHHHHHc--CC-CCEEEEEeEECCCc-eEEEecccccCCCeEEEEecccCcHHH
Confidence 9999997531 2468899999999999988876 44 89999999997543 233456789999999999999999999
Q ss_pred HHHHHHHHHHcCCCEEEEEEEcccccCCC
Q 018472 325 IAKGAALLHQEGAREVYACCTHAVFRLDY 353 (355)
Q Consensus 325 l~~aa~~Lk~~GA~~V~v~~tHglfs~~a 353 (355)
+.++++.|+++||++|+++||||+|+++|
T Consensus 246 l~~aa~~L~~~Ga~~V~~~~THglfs~~a 274 (326)
T PLN02297 246 LIECQKVLAAHGAAKVSAYVTHGVFPNES 274 (326)
T ss_pred HHHHHHHHHHCCCcEEEEEEECcccChhH
Confidence 99999999999999999999999999975
No 14
>PRK06827 phosphoribosylpyrophosphate synthetase; Provisional
Probab=100.00 E-value=2e-67 Score=522.77 Aligned_cols=252 Identities=27% Similarity=0.471 Sum_probs=233.0
Q ss_pred CCCEEEEECCCCHHHHHHHHHHh--------------------C--CceeceeeeecCCCceEEEeccCcCCCcEEEEcc
Q 018472 96 NNRIKLFSGTANPALSQEIACYM--------------------G--VELGKINIKRFADGEIYVQLQESVRGCDVYLVQP 153 (355)
Q Consensus 96 ~~~~~ifsg~~~~~LA~~Ia~~L--------------------g--~~l~~~~~~~FpDGE~~v~i~~~VrG~dV~iiqs 153 (355)
..+|+||+|+++++||++||++| | ++++++++++|||||++|+++++|||+|||||||
T Consensus 6 ~~~~~i~~~~~~~~la~~ia~~l~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~FpDGE~~vri~~~Vrg~dV~ivqs 85 (382)
T PRK06827 6 VGSLGIIALPSCRELADKVDEHLVRIRERKENENIESLAFKGYSRESYLIPAKFIRFSNGEAKGEILESVRGKDIYILQD 85 (382)
T ss_pred CCceEEEECCCCHHHHHHHHHHHHHhhhhccccccccccccccCCcceeeeeEEEECCCCCEEEEECCCCCCCeEEEEec
Confidence 45699999999999999999999 6 4599999999999999999999999999999999
Q ss_pred CCC--------------CchhHHHHHHHHHHHHHhcCCCeEEEEeeCccccccccccCCCCcchHHHHHHHHHHhCCCEE
Q 018472 154 TCP--------------PANENLMELLIMIDACRRASAKNITAVIPYFGYARADRKTQGRESIAAKLVANLITEAGADRV 219 (355)
Q Consensus 154 ~~~--------------p~nd~lmELll~idalr~~~a~~ItlViPY~~YaRqDr~~~~ge~isak~vA~lL~~~G~d~V 219 (355)
++. |+||+|||||+|+|||| +||++||+|+|||||+||||+ .+|||+++|++|+||+.+|+|+|
T Consensus 86 ~~~~~v~~~~~~~~~~~p~nd~lmeLll~idalr-agA~rIt~ViPY~~YaRQDr~-~~~e~itak~vA~lL~~~G~d~v 163 (382)
T PRK06827 86 VGNYSVTYNMFGEKNHMSPDDHFQDLKRTIDAIR-GKARRITVIMPFLYESRQHKR-KGRESLDCALALQELEELGVDNI 163 (382)
T ss_pred CCcccccccccccccCCCCcHHHHHHHHHHHHHh-cCCCeEEEEeecccccccccc-cCCCCccHHHHHHHHHHcCCCeE
Confidence 974 88999999999999999 999999999999999999999 79999999999999999999999
Q ss_pred EEccCCchhhhcccC-CccccccchHHHHHHHHhhc----CCCCCeEEEecCCChhHHHHHHHHHcCCCCEEEEEEeecC
Q 018472 220 LACDLHSGQSMGYFD-IPVDHVYCQPVILDYLASKT----VSSNDLVVVSPDVGGVARARAFAKKLSDAPLAIVDKRRHG 294 (355)
Q Consensus 220 itvDlHs~~~~~~F~-ip~~~l~a~~~La~~L~~~~----~~~~~~vVVspd~Ggv~rA~~lA~~L~~~p~~~v~K~R~~ 294 (355)
+++|+|+.++++||+ .|++++.+.+.+++|+.+.. .+.++++||+||.||++||+.+|+.|+ .++++++|+|..
T Consensus 164 itvDlHs~~i~~~F~~~pvdnl~a~~~l~~~i~~~i~~l~~d~~~~VVVsPD~Gg~~rA~~~A~~Lg-~~~ai~~K~R~~ 242 (382)
T PRK06827 164 ITFDAHDPRIENAIPLMGFENLYPSYQIIKALLKNEKDLEIDKDHLMVISPDTGAMDRAKYYASVLG-VDLGLFYKRRDY 242 (382)
T ss_pred EEecCChHHhcccCCCCCcCCcCchHHHHHHHHHhcccccccCCCcEEEEECccchHHHHHHHHHhC-CCEEEEEcccCC
Confidence 999999999999998 58999999999999997542 123688999999999999999999997 899999999964
Q ss_pred CCe------eEEEeeec-CCCCCEEEEEeCcccchHHHHHHHHHHHHcCCCEEEEEEEccccc
Q 018472 295 HNV------AEVMNLIG-DVKGKVAVMVDDMIDTAGTIAKGAALLHQEGAREVYACCTHAVFR 350 (355)
Q Consensus 295 ~~~------~e~~~l~g-dVkGK~VLIVDDIIdTG~Tl~~aa~~Lk~~GA~~V~v~~tHglfs 350 (355)
.+. ...+.+.| +++||+|||||||||||+|+.++++.|+++||++|+++||||+|+
T Consensus 243 ~~~~~g~~~~~~~~~~g~dV~gr~vIIVDDII~TG~Tl~~aa~~Lk~~GA~~V~~~~tH~vf~ 305 (382)
T PRK06827 243 SRVVNGRNPIVAHEFLGRDVEGKDVLIVDDMIASGGSMIDAAKELKSRGAKKIIVAATFGFFT 305 (382)
T ss_pred cccccCCCceEEEecCCcccCCCEEEEEeCCcCcHHHHHHHHHHHHHcCCCEEEEEEEeecCh
Confidence 322 23346678 899999999999999999999999999999999999999999998
No 15
>PRK00934 ribose-phosphate pyrophosphokinase; Provisional
Probab=100.00 E-value=2.7e-67 Score=505.71 Aligned_cols=248 Identities=37% Similarity=0.636 Sum_probs=232.2
Q ss_pred EEEECCCCHHHHHHHHHHhCCceeceeeeecCCCceEEEeccCcCCCcEEEEccCCCCchhHHHHHHHHHHHHHhcCCCe
Q 018472 100 KLFSGTANPALSQEIACYMGVELGKINIKRFADGEIYVQLQESVRGCDVYLVQPTCPPANENLMELLIMIDACRRASAKN 179 (355)
Q Consensus 100 ~ifsg~~~~~LA~~Ia~~Lg~~l~~~~~~~FpDGE~~v~i~~~VrG~dV~iiqs~~~p~nd~lmELll~idalr~~~a~~ 179 (355)
+||+|++|++||++||+.||++++++++++|||||++|++.++|||+||||+|++. |+||++||||+|++|||++||++
T Consensus 1 ~i~~~~~~~~la~~ia~~l~~~~~~~~~~~FpdGE~~v~i~~~v~g~~v~i~~~~~-~~~d~l~ell~~~~alr~~ga~~ 79 (285)
T PRK00934 1 MIIGGSASQLLASEVARLLNTELALVETKRFPDGELYVRILGEIDGEDVVIISTTY-PQDENLVELLLLIDALRDEGAKS 79 (285)
T ss_pred CeEeCCCCHHHHHHHHHHHCCceEeeEEEECCCCCEEEEECCCcCCCEEEEEeCCC-CCcHHHHHHHHHHHHHHHcCCCe
Confidence 47999999999999999999999999999999999999999999999999999964 67999999999999999999999
Q ss_pred EEEEeeCccccccccccCCCCcchHHHHHHHHHHhCCCEEEEccCCchhhhcccCCccccccchHHHHHHHHhhcCCCCC
Q 018472 180 ITAVIPYFGYARADRKTQGRESIAAKLVANLITEAGADRVLACDLHSGQSMGYFDIPVDHVYCQPVILDYLASKTVSSND 259 (355)
Q Consensus 180 ItlViPY~~YaRqDr~~~~ge~isak~vA~lL~~~G~d~VitvDlHs~~~~~~F~ip~~~l~a~~~La~~L~~~~~~~~~ 259 (355)
||+|+|||||+||||++++||++++|++|+||+.+| |+|+++|+|+.++++||++|++|+++.+.++++|.+. .++
T Consensus 80 i~~v~PY~~YaRqDr~~~~ge~isak~~a~ll~~~~-d~vitvD~H~~~~~~~f~~~~~~l~a~~~la~~i~~~---~~~ 155 (285)
T PRK00934 80 ITLVIPYLGYARQDKRFKPGEPISARAIAKIISAYY-DRIITINIHEPSILEFFPIPFINLDAAPLIAEYIGDK---LDD 155 (285)
T ss_pred EEEEecCCcccccccccCCCCCccHHHHHHHHHHhc-CEEEEEcCChHHHcCcCCCcEeEeecHHHHHHHHHhc---CCC
Confidence 999999999999999999999999999999999998 9999999999999999999999999999999999543 357
Q ss_pred eEEEecCCChhHHHHHHHHHcCCCCEEEEEEeecCCCeeEEEeeecCCCCCEEEEEeCcccchHHHHHHHHHHHHcCCCE
Q 018472 260 LVVVSPDVGGVARARAFAKKLSDAPLAIVDKRRHGHNVAEVMNLIGDVKGKVAVMVDDMIDTAGTIAKGAALLHQEGARE 339 (355)
Q Consensus 260 ~vVVspd~Ggv~rA~~lA~~L~~~p~~~v~K~R~~~~~~e~~~l~gdVkGK~VLIVDDIIdTG~Tl~~aa~~Lk~~GA~~ 339 (355)
++||+||.||++||..+++.++ .++.+++|.|...+..+.....++++||+|||||||+|||+|+.++++.|+++||++
T Consensus 156 ~vvv~pd~Ga~~~a~~lA~~l~-~~~~~i~k~r~~~~~~~~~~~~~~v~Gk~VlIVDDIi~TG~Tl~~aa~~Lk~~GA~~ 234 (285)
T PRK00934 156 PLVLAPDKGALELAKEAAEILG-CEYDYLEKTRISPTEVEIAPKNLDVKGKDVLIVDDIISTGGTMATAIKILKEQGAKK 234 (285)
T ss_pred CEEEEeCCchHHHHHHHHHHhC-CCEEEEEEEecCCCeEEEeccccccCCCEEEEEcCccccHHHHHHHHHHHHHCCCCE
Confidence 7999999999999999999997 999999999876554444344568999999999999999999999999999999999
Q ss_pred EEEEEEcccccCCC
Q 018472 340 VYACCTHAVFRLDY 353 (355)
Q Consensus 340 V~v~~tHglfs~~a 353 (355)
|+++++||+|++++
T Consensus 235 V~~~~~H~i~~~~a 248 (285)
T PRK00934 235 VYVACVHPVLVGDA 248 (285)
T ss_pred EEEEEEeeccCcHH
Confidence 99999999999875
No 16
>TIGR01251 ribP_PPkin ribose-phosphate pyrophosphokinase. In some systems, close homologs lacking enzymatic activity exist and perform regulatory functions. The model is designated subfamily rather than equivalog for this reason.
Probab=100.00 E-value=2.3e-66 Score=504.06 Aligned_cols=252 Identities=58% Similarity=0.932 Sum_probs=239.3
Q ss_pred EEEEECCCCHHHHHHHHHHhCCceeceeeeecCCCceEEEeccCcCCCcEEEE-ccCCCCchhHHHHHHHHHHHHHhcCC
Q 018472 99 IKLFSGTANPALSQEIACYMGVELGKINIKRFADGEIYVQLQESVRGCDVYLV-QPTCPPANENLMELLIMIDACRRASA 177 (355)
Q Consensus 99 ~~ifsg~~~~~LA~~Ia~~Lg~~l~~~~~~~FpDGE~~v~i~~~VrG~dV~ii-qs~~~p~nd~lmELll~idalr~~~a 177 (355)
|+||+|+++++||++||+.||++++++++++|||||++|++.++|||+||||+ ||+++|+||++|||+++++|||++||
T Consensus 1 ~~i~~~~~~~~la~~ia~~lg~~~~~~~~~~FpdGE~~v~i~~~v~g~~v~iv~~s~~~~~~~~l~el~~~~~a~r~~ga 80 (308)
T TIGR01251 1 MKIFSGSSNQELAQKVAKNLGLPLGDVEVKRFPDGELYVRINESVRGKDVFIIQQSTSAPVNDNLMELLIMIDALKRASA 80 (308)
T ss_pred CEEEECCCCHHHHHHHHHHhCCeeeeeEEEECCCCCEEEEECCCCCCCeEEEEeCCCCCCccHHHHHHHHHHHHHHHcCC
Confidence 57999999999999999999999999999999999999999999999999999 99988899999999999999999999
Q ss_pred CeEEEEeeCccccccccccCCCCcchHHHHHHHHHHhCCCEEEEccCCchhhhcccCCccccccchHHHHHHHHhhcCCC
Q 018472 178 KNITAVIPYFGYARADRKTQGRESIAAKLVANLITEAGADRVLACDLHSGQSMGYFDIPVDHVYCQPVILDYLASKTVSS 257 (355)
Q Consensus 178 ~~ItlViPY~~YaRqDr~~~~ge~isak~vA~lL~~~G~d~VitvDlHs~~~~~~F~ip~~~l~a~~~La~~L~~~~~~~ 257 (355)
++||+|+|||||+||||++++||++++|.+|+||+.+|+|+|+++|+|+.++++||++|++++++.+.+++||.++. .
T Consensus 81 ~~i~~v~PYl~Y~RqDr~~~~ge~is~~~~a~ll~~~g~d~vit~DlHs~~~~~~f~ip~~~l~a~~~l~~~i~~~~--~ 158 (308)
T TIGR01251 81 KSITAVIPYYGYARQDKKFKSREPISAKLVANLLETAGADRVLTVDLHSPQIQGFFDVPVDNLYASPVLAEYLKKKI--L 158 (308)
T ss_pred CeEEEEEEecccchhccccCCCCCchHHHHHHHHHHcCCCEEEEecCChHHhcCcCCCceecccCHHHHHHHHHhhC--C
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999998763 4
Q ss_pred CCeEEEecCCChhHHHHHHHHHcCCCCEEEEEEeec-CCCeeEEEeeecCCCCCEEEEEeCcccchHHHHHHHHHHHHcC
Q 018472 258 NDLVVVSPDVGGVARARAFAKKLSDAPLAIVDKRRH-GHNVAEVMNLIGDVKGKVAVMVDDMIDTAGTIAKGAALLHQEG 336 (355)
Q Consensus 258 ~~~vVVspd~Ggv~rA~~lA~~L~~~p~~~v~K~R~-~~~~~e~~~l~gdVkGK~VLIVDDIIdTG~Tl~~aa~~Lk~~G 336 (355)
+++++|+||.||++||..+|+.|+ .++.+++|+|. ..+..+...+.++++||+|+|||||++||+|+.++++.|+++|
T Consensus 159 ~~~viv~pd~g~~~~A~~lA~~Lg-~~~~~i~k~r~~~~~~~~~~~~~~~v~g~~vliVDDii~tG~Tl~~a~~~l~~~g 237 (308)
T TIGR01251 159 DNPVVVSPDAGGVERAKKVADALG-CPLAIIDKRRISATNEVEVMNLVGDVEGKDVVIVDDIIDTGGTIAKAAEILKSAG 237 (308)
T ss_pred CCCEEEEECCchHHHHHHHHHHhC-CCEEEEEEEecCCCCEEEEEecccccCCCEEEEEccccCCHHHHHHHHHHHHhcC
Confidence 678999999999999999999997 99999999997 4444455566789999999999999999999999999999999
Q ss_pred CCEEEEEEEcccccCCC
Q 018472 337 AREVYACCTHAVFRLDY 353 (355)
Q Consensus 337 A~~V~v~~tHglfs~~a 353 (355)
|++|++++|||+|++++
T Consensus 238 a~~v~~~~th~v~~~~a 254 (308)
T TIGR01251 238 AKRVIAAATHGVFSGPA 254 (308)
T ss_pred CCEEEEEEEeeecCcHH
Confidence 99999999999999864
No 17
>KOG1503 consensus Phosphoribosylpyrophosphate synthetase-associated protein [Amino acid transport and metabolism; Nucleotide transport and metabolism]
Probab=100.00 E-value=4.1e-55 Score=403.29 Aligned_cols=260 Identities=34% Similarity=0.627 Sum_probs=239.2
Q ss_pred ccCCCCEEEEECCCCHHHHHHHHHHhCCceeceeeeecCCCceEEEeccCcCCCcEEEEccCCCCchhHHHHHHHHHHHH
Q 018472 93 RTTNNRIKLFSGTANPALSQEIACYMGVELGKINIKRFADGEIYVQLQESVRGCDVYLVQPTCPPANENLMELLIMIDAC 172 (355)
Q Consensus 93 ~~~~~~~~ifsg~~~~~LA~~Ia~~Lg~~l~~~~~~~FpDGE~~v~i~~~VrG~dV~iiqs~~~p~nd~lmELll~idal 172 (355)
+...+++.+|+|+++++||+.|+++||+++++..+.+-+|+|+.|+|.++|||+||||||+.+..+|.++||||+|+.||
T Consensus 3 n~a~sg~vl~s~ns~~elak~vaerlgi~~g~~~vy~~tnret~vei~~svrgkdvfiiqt~skdvn~~vmellim~yac 82 (354)
T KOG1503|consen 3 NDASSGMVLFSGNSHPELAKMVAERLGIELGKATVYQKTNRETRVEIKESVRGKDVFIIQTGSKDVNNDVMELLIMAYAC 82 (354)
T ss_pred CcccCCeEEEcCCCCHHHHHHHHHHhcccccceEEEecCCCceEEEhhhhccCceEEEEEecCcccchHHHHHHHHHHHH
Confidence 44578899999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HhcCCCeEEEEeeCccccccccccCCCCcchHHHHHHHHHHhCCCEEEEccCCchhhhcccCCccccccchHHHHHHHHh
Q 018472 173 RRASAKNITAVIPYFGYARADRKTQGRESIAAKLVANLITEAGADRVLACDLHSGQSMGYFDIPVDHVYCQPVILDYLAS 252 (355)
Q Consensus 173 r~~~a~~ItlViPY~~YaRqDr~~~~ge~isak~vA~lL~~~G~d~VitvDlHs~~~~~~F~ip~~~l~a~~~La~~L~~ 252 (355)
|.+.+++|+.|||||||++| .+++.|.+|..|++|.|+.++|..++|++|||..++||||++|+|||.+.|.|.+||.+
T Consensus 83 kts~aksiigvipy~pyskq-ckmrkrgsiv~klla~mmckaglthlitmdlhqkeiqgff~~pvdnlraspfllqyiqe 161 (354)
T KOG1503|consen 83 KTSCAKSIIGVIPYLPYSKQ-CKMRKRGSIVSKLLASMMCKAGLTHLITMDLHQKEIQGFFSIPVDNLRASPFLLQYIQE 161 (354)
T ss_pred hhhhhhceEEEeecCccchh-hhhhhcccHHHHHHHHHHHhcccceEEeehhhhHhhcceecccccccccCHHHHHHHHH
Confidence 99999999999999999999 55677889999999999999999999999999999999999999999999999999999
Q ss_pred hcCCCCCeEEEecCCChhHHHHHHHHHcCCCCEEEEEEeecCC---------------C-----eeE----------EEe
Q 018472 253 KTVSSNDLVVVSPDVGGVARARAFAKKLSDAPLAIVDKRRHGH---------------N-----VAE----------VMN 302 (355)
Q Consensus 253 ~~~~~~~~vVVspd~Ggv~rA~~lA~~L~~~p~~~v~K~R~~~---------------~-----~~e----------~~~ 302 (355)
.+++++|.+||+-..|..++|..+|++|. +.+++++.+.+.. + ..+ -+.
T Consensus 162 ~ipdyrnavivaksp~~akka~syaerlr-lglavihge~k~~e~d~~dgr~spp~~~~~t~~~~~~lp~~~~k~kpplt 240 (354)
T KOG1503|consen 162 EIPDYRNAVIVAKSPGVAKKAQSYAERLR-LGLAVIHGEQKDTESDLVDGRHSPPPVVTATTHPSLELPAQISKEKPPLT 240 (354)
T ss_pred hCccccceEEEecCcchhhHHHhHHHHHh-hceeEeeccccccccccccCCcCCCCccccccCccccCchhhcccCCCeE
Confidence 99999999999999999999999999986 6777765432100 0 000 135
Q ss_pred eecCCCCCEEEEEeCcccchHHHHHHHHHHHHcCCCEEEEEEEcccccCCCC
Q 018472 303 LIGDVKGKVAVMVDDMIDTAGTIAKGAALLHQEGAREVYACCTHAVFRLDYK 354 (355)
Q Consensus 303 l~gdVkGK~VLIVDDIIdTG~Tl~~aa~~Lk~~GA~~V~v~~tHglfs~~a~ 354 (355)
+.|||.||-.|+||||||.-.++.+|++.||+.||-+||+.+|||++|.+|.
T Consensus 241 vvgdvggriaimvddiiddvqsfvaaae~lkergaykiyv~athgllssdap 292 (354)
T KOG1503|consen 241 VVGDVGGRIAIMVDDIIDDVQSFVAAAEVLKERGAYKIYVMATHGLLSSDAP 292 (354)
T ss_pred EEeccCceEEEEehhhHHhHHHHHHHHHHHHhcCceEEEEEeecccccccch
Confidence 6899999999999999999999999999999999999999999999998873
No 18
>PF13793 Pribosyltran_N: N-terminal domain of ribose phosphate pyrophosphokinase; PDB: 2JI4_A 1DKU_B 1IBS_B 1DKR_B 3MBI_C 3LRT_B 3LPN_B 3NAG_B 2H07_B 2H06_B ....
Probab=100.00 E-value=3.7e-41 Score=284.50 Aligned_cols=116 Identities=55% Similarity=0.921 Sum_probs=102.4
Q ss_pred EEEEECCCCHHHHHHHHHHhCCceeceeeeecCCCceEEEeccCcCCCcEEEEccCCCCchhHHHHHHHHHHHHHhcCCC
Q 018472 99 IKLFSGTANPALSQEIACYMGVELGKINIKRFADGEIYVQLQESVRGCDVYLVQPTCPPANENLMELLIMIDACRRASAK 178 (355)
Q Consensus 99 ~~ifsg~~~~~LA~~Ia~~Lg~~l~~~~~~~FpDGE~~v~i~~~VrG~dV~iiqs~~~p~nd~lmELll~idalr~~~a~ 178 (355)
|+||+|+++++||++||++||++++++++++|||||++|++++++||+||||||++++|+||++||||++++|||++||+
T Consensus 1 m~I~~g~~~~~La~~ia~~L~~~~~~~~~~~F~dGE~~v~i~~~v~g~dv~iiqs~~~~~nd~lmeLll~i~a~r~~~a~ 80 (116)
T PF13793_consen 1 MVIFSGSSSQDLAERIAEALGIPLGKVETKRFPDGETYVRIPESVRGKDVFIIQSTSPPVNDNLMELLLLIDALRRAGAK 80 (116)
T ss_dssp EEEEESSSGHHHHHHHHHHTTS-EE-EEEEE-TTS-EEEEESS--TTSEEEEE---SSSHHHHHHHHHHHHHHHHHTTBS
T ss_pred CEEEECCCCHHHHHHHHHHhCCceeeeEEEEcCCCCEEEEecccccCCceEEEEecCCchhHHHHHHHHHHHHHHHcCCc
Confidence 68999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred eEEEEeeCccccccccccCCCCcchHHHHHHHHHHhC
Q 018472 179 NITAVIPYFGYARADRKTQGRESIAAKLVANLITEAG 215 (355)
Q Consensus 179 ~ItlViPY~~YaRqDr~~~~ge~isak~vA~lL~~~G 215 (355)
+|++|+|||||+||||+ .+|||+++|.+|+||+.+|
T Consensus 81 ~i~~ViPYl~YaRQDr~-~~ge~isak~~a~lL~~~G 116 (116)
T PF13793_consen 81 RITLVIPYLPYARQDRR-KPGEPISAKVVAKLLSAAG 116 (116)
T ss_dssp EEEEEESS-TTTTSSSS-STTC--HHHHHHHHHHHHT
T ss_pred EEEEeccchhhhhhccC-CCCCcchHHHHHHHHHhcC
Confidence 99999999999999999 9999999999999999987
No 19
>PF14572 Pribosyl_synth: Phosphoribosyl synthetase-associated domain; PDB: 2H07_B 2H06_B 3S5J_B 2HCR_A 3EFH_A 2H08_A 1DKR_B 1DKU_B 1IBS_B 2JI4_A ....
Probab=99.88 E-value=6.9e-23 Score=184.94 Aligned_cols=97 Identities=44% Similarity=0.756 Sum_probs=75.0
Q ss_pred CCCCeEEEecCCChhHHHHHHHHHcCCCCEEEEEEeecCC------------------------------CeeEEEeeec
Q 018472 256 SSNDLVVVSPDVGGVARARAFAKKLSDAPLAIVDKRRHGH------------------------------NVAEVMNLIG 305 (355)
Q Consensus 256 ~~~~~vVVspd~Ggv~rA~~lA~~L~~~p~~~v~K~R~~~------------------------------~~~e~~~l~g 305 (355)
+++|.|||+|+.||.+||..||+.|+ +.+++++++|... +....+.+.|
T Consensus 1 dy~naVIVa~~~g~akRAts~Ad~L~-l~~avih~e~~~~~~~~~~~~~s~p~~~~~~~~~~~~~~~~~~~e~~~~~vVG 79 (184)
T PF14572_consen 1 DYRNAVIVAKDPGGAKRATSFADRLR-LGFAVIHGERRDSESDGVDGRHSPPMSRSAAVSSSEEIPEMTPKEKPPMNVVG 79 (184)
T ss_dssp TGGGEEEEESSGGGHHHHHHHHHHCT--EEEEE------------------------------------------EEEES
T ss_pred CCCCCEEEeCCCCchHhHHHHHHHhC-CCeeEecCccccccccccccccCCCccccccccccchhhhcccCcccceEEEE
Confidence 35789999999999999999999997 8999988766310 0011257889
Q ss_pred CCCCCEEEEEeCcccchHHHHHHHHHHHHcCCCEEEEEEEcccccCCC
Q 018472 306 DVKGKVAVMVDDMIDTAGTIAKGAALLHQEGAREVYACCTHAVFRLDY 353 (355)
Q Consensus 306 dVkGK~VLIVDDIIdTG~Tl~~aa~~Lk~~GA~~V~v~~tHglfs~~a 353 (355)
||+||+|||||||||||+|+.++++.||++||++||+++|||+||++|
T Consensus 80 DV~gk~~IIvDDiIdtg~Tl~~aA~~Lk~~GA~~V~~~aTHgvfs~~A 127 (184)
T PF14572_consen 80 DVKGKICIIVDDIIDTGGTLIKAAELLKERGAKKVYACATHGVFSGDA 127 (184)
T ss_dssp --TTSEEEEEEEEESSTHHHHHHHHHHHHTTESEEEEEEEEE---TTH
T ss_pred EccCCeEeeecccccchHHHHHHHHHHHHcCCCEEEEEEeCcccCchH
Confidence 999999999999999999999999999999999999999999999986
No 20
>PRK13811 orotate phosphoribosyltransferase; Provisional
Probab=99.78 E-value=1.5e-18 Score=155.80 Aligned_cols=136 Identities=29% Similarity=0.377 Sum_probs=110.4
Q ss_pred HHHHHHHHHhCCCEEEEccCCchhhhcccCCccccccchHHHHHHHHhhcC-CCCCeEEEecCCChhHHHHHHHHHcCCC
Q 018472 205 KLVANLITEAGADRVLACDLHSGQSMGYFDIPVDHVYCQPVILDYLASKTV-SSNDLVVVSPDVGGVARARAFAKKLSDA 283 (355)
Q Consensus 205 k~vA~lL~~~G~d~VitvDlHs~~~~~~F~ip~~~l~a~~~La~~L~~~~~-~~~~~vVVspd~Ggv~rA~~lA~~L~~~ 283 (355)
..++++|.+.|++++..+++||++.++|| +.+..+...|.+.+++.+.+. ..+..+|++|+.||+++|..+|..++ .
T Consensus 3 ~~~~~~l~~~ga~~~g~f~L~SG~~s~~y-~d~~~l~~~p~~~~~l~~~l~~~~~~d~Vvg~~~gGi~~A~~~a~~l~-~ 80 (170)
T PRK13811 3 NTIAELLISYKAIEFGDFTLASGAKSRYY-IDIKTAITHPALLKEIAAEVAKRYDFDVVAGVAVGGVPLAVAVSLAAG-K 80 (170)
T ss_pred HHHHHHHHHCCCEEECCEEEccCCcCCEE-EeCchhccCHHHHHHHHHHHHhhCCCCEEEecCcCcHHHHHHHHHHHC-C
Confidence 46899999999999999999999999888 223446666777777765441 12345899999999999999999997 9
Q ss_pred CEEEEEEeecCCCeeEEEeeecCCCCCEEEEEeCcccchHHHHHHHHHHHHcCCCEEEEEE
Q 018472 284 PLAIVDKRRHGHNVAEVMNLIGDVKGKVAVMVDDMIDTAGTIAKGAALLHQEGAREVYACC 344 (355)
Q Consensus 284 p~~~v~K~R~~~~~~e~~~l~gdVkGK~VLIVDDIIdTG~Tl~~aa~~Lk~~GA~~V~v~~ 344 (355)
|+.+++|++...+... ...|+++|++|+||||+++||+|+.++++.|++.||+-+.+++
T Consensus 81 p~~~~rK~~k~~g~~~--~~~g~~~g~~VlIVDDvi~TG~T~~~~~~~l~~~Ga~v~~~~~ 139 (170)
T PRK13811 81 PYAIIRKEAKDHGKAG--LIIGDVKGKRVLLVEDVTTSGGSALYGIEQLRAAGAVVDDVVT 139 (170)
T ss_pred CEEEEecCCCCCCCcc--eEEcccCCCEEEEEEecccccHHHHHHHHHHHHCCCeEEEEEE
Confidence 9999998865443222 3457899999999999999999999999999999998655554
No 21
>PRK13812 orotate phosphoribosyltransferase; Provisional
Probab=99.59 E-value=1.3e-14 Score=131.05 Aligned_cols=137 Identities=18% Similarity=0.256 Sum_probs=99.3
Q ss_pred hHHHHHHHHHHhCCCEEEEccCCchhhhccc-CCccccc--cchHHHHHHHHhhcCCCCCeEEEecCCChhHHHHHHHHH
Q 018472 203 AAKLVANLITEAGADRVLACDLHSGQSMGYF-DIPVDHV--YCQPVILDYLASKTVSSNDLVVVSPDVGGVARARAFAKK 279 (355)
Q Consensus 203 sak~vA~lL~~~G~d~VitvDlHs~~~~~~F-~ip~~~l--~a~~~La~~L~~~~~~~~~~vVVspd~Ggv~rA~~lA~~ 279 (355)
+.+.+.+.|...|+=+.-.+-+-|++...|| |...-.. .....+++++.+.+. +..+|++|+.||+++|..+|..
T Consensus 2 ~~~~l~~~l~~~~a~~~g~f~l~SG~~S~~yid~~~~~~~p~~~~~i~~~l~~~i~--~~d~ivg~~~ggi~lA~~lA~~ 79 (176)
T PRK13812 2 ATDDLIAALRDADAVQFGEFELSHGGTSEYYVDKYLFETDPDCLRLIAEAFADRID--EDTKLAGVALGAVPLVAVTSVE 79 (176)
T ss_pred cHHHHHHHHHHCCCEEeCCEEECcCCcCCEEEeCeeccCCHHHHHHHHHHHHHHhc--cCCEEEEeecchHHHHHHHHHH
Confidence 3466778888887744444555666665443 4221111 124556666666542 2379999999999999999999
Q ss_pred cCCCCEEEEEEeecCCCeeEEEeeecCC-CCCEEEEEeCcccchHHHHHHHHHHHHcCCCEEEEEE
Q 018472 280 LSDAPLAIVDKRRHGHNVAEVMNLIGDV-KGKVAVMVDDMIDTAGTIAKGAALLHQEGAREVYACC 344 (355)
Q Consensus 280 L~~~p~~~v~K~R~~~~~~e~~~l~gdV-kGK~VLIVDDIIdTG~Tl~~aa~~Lk~~GA~~V~v~~ 344 (355)
|+ .|+.+++|++...+..+. ..|++ +|++|+||||+++||+|+.++++.|++.|++.+.+++
T Consensus 80 l~-~p~~~~rk~~k~yg~~~~--~~g~~~~g~~VlIVDDvitTG~Tl~~~~~~l~~~Ga~vv~~~v 142 (176)
T PRK13812 80 TG-VPYVIARKQAKEYGTGNR--IEGRLDEGEEVVVLEDIATTGQSAVDAVEALREAGATVNRVLV 142 (176)
T ss_pred HC-CCEEEEeccCCcCCCCCe--EEecCCCcCEEEEEEEeeCCCHHHHHHHHHHHHCCCeEEEEEE
Confidence 97 899999998765432211 34666 8999999999999999999999999999998766665
No 22
>TIGR01203 HGPRTase hypoxanthine phosphoribosyltransferase. Sequence differences as small as a single residue can affect whether members of this family act on hypoxanthine and guanine or hypoxanthine only. The designation of this model as equivalog reflects hypoxanthine specificity and does not reflect whether or not guanine can replace hypoxanthine.
Probab=99.57 E-value=1.8e-14 Score=128.80 Aligned_cols=103 Identities=16% Similarity=0.207 Sum_probs=80.1
Q ss_pred chHHHHHHHHhhcCCCCCeEEEecCCChhHHHHHHHHHcCCCC--EEEEEEe--ecCC---CeeEE-EeeecCCCCCEEE
Q 018472 242 CQPVILDYLASKTVSSNDLVVVSPDVGGVARARAFAKKLSDAP--LAIVDKR--RHGH---NVAEV-MNLIGDVKGKVAV 313 (355)
Q Consensus 242 a~~~La~~L~~~~~~~~~~vVVspd~Ggv~rA~~lA~~L~~~p--~~~v~K~--R~~~---~~~e~-~~l~gdVkGK~VL 313 (355)
....||+.|.+.+ ..++++||+|+.||+.+|+.+++.|+ .+ +.++.-. +... +.... ..+..+++||+||
T Consensus 11 ~i~~lA~~I~~~~-~~~~~vvv~i~~GG~~~a~~l~~~L~-~~~~v~~i~~~~Y~~~~~~~~~~~~~~~~~~~~~gk~vl 88 (166)
T TIGR01203 11 RIAELAKQITEDY-AGKPLVLLCVLKGSFPFFADLIRYIA-VPVQVDFMAVSSYGNGMQSSGDVKILKDLDLSIKGKDVL 88 (166)
T ss_pred HHHHHHHHHHHHc-CCCCeEEEEEccCCHHHHHHHHHhcC-CCceeeEEEEeeccCCCcccCceEEecCCCCCCCCCEEE
Confidence 4567888887764 34678999999999999999999997 55 4445432 2111 11222 2355689999999
Q ss_pred EEeCcccchHHHHHHHHHHHHcCCCEEEEEEEc
Q 018472 314 MVDDMIDTAGTIAKGAALLHQEGAREVYACCTH 346 (355)
Q Consensus 314 IVDDIIdTG~Tl~~aa~~Lk~~GA~~V~v~~tH 346 (355)
|||||+|||+|+.++++.|++.||++|++++.+
T Consensus 89 ivDDii~TG~Tl~~~~~~l~~~g~~~i~~~~l~ 121 (166)
T TIGR01203 89 IVEDIVDTGLTLQYLLDLLKARKPKSLKIVTLL 121 (166)
T ss_pred EEeeeeCcHHHHHHHHHHHHHCCCCEEEEEEEE
Confidence 999999999999999999999999999998864
No 23
>PRK08525 amidophosphoribosyltransferase; Provisional
Probab=99.55 E-value=3.6e-14 Score=144.88 Aligned_cols=107 Identities=29% Similarity=0.374 Sum_probs=79.8
Q ss_pred HHHHHHHhhcCCCCCeEEEecCCChhHHHHHHHHHcCCCCE--EEEEEeecCC-----C-----e-e-EEEeeecC-CCC
Q 018472 245 VILDYLASKTVSSNDLVVVSPDVGGVARARAFAKKLSDAPL--AIVDKRRHGH-----N-----V-A-EVMNLIGD-VKG 309 (355)
Q Consensus 245 ~La~~L~~~~~~~~~~vVVspd~Ggv~rA~~lA~~L~~~p~--~~v~K~R~~~-----~-----~-~-e~~~l~gd-VkG 309 (355)
.+.+.|.++.....+.++..|| +|..+|..+|+.|+ +|+ .+++|++.+. . . . ..+...++ ++|
T Consensus 263 ~~G~~La~~~~~~~d~Vv~vPd-~g~~~A~~~A~~lg-ip~~~~l~rk~~~~r~~i~~~qr~rn~~~~~~~~~~~~~v~g 340 (445)
T PRK08525 263 KMGEELAKKFPIKADFVVPVPD-SGVPAAIGYAQESG-IPFEMAIVRNHYVGRTFIEPTQEMRNLKVKLKLNPMSKVLEG 340 (445)
T ss_pred HHHHHHHHHhcccCCeEEECCc-hHHHHHHHHHHHhC-CCccceEEEeeccccccCCHHHHHHhhheeEEecccccccCC
Confidence 4555555544333456666677 56999999999997 887 4555553221 1 0 1 11122344 899
Q ss_pred CEEEEEeCcccchHHHHHHHHHHHHcCCCEEEEEEEcccccCCC
Q 018472 310 KVAVMVDDMIDTAGTIAKGAALLHQEGAREVYACCTHAVFRLDY 353 (355)
Q Consensus 310 K~VLIVDDIIdTG~Tl~~aa~~Lk~~GA~~V~v~~tHglfs~~a 353 (355)
|+||||||+++||+|+.++++.|+++||++|++++|||+|.++|
T Consensus 341 K~VlLVDDvitTG~Tl~~a~~~Lr~aGA~~V~v~~~hp~~~~~~ 384 (445)
T PRK08525 341 KRIVVIDDSIVRGTTSKKIVSLLRAAGAKEIHLRIACPEIKFPC 384 (445)
T ss_pred CeEEEEecccCcHHHHHHHHHHHHhcCCCEEEEEEECCCcCCch
Confidence 99999999999999999999999999999999999999999987
No 24
>PRK09162 hypoxanthine-guanine phosphoribosyltransferase; Provisional
Probab=99.55 E-value=4.3e-14 Score=128.00 Aligned_cols=103 Identities=20% Similarity=0.281 Sum_probs=81.8
Q ss_pred chHHHHHHHHhhcCCCCCeEEEecCCChhHHHHHHHHHcCCCCE--EEEEEeecCCCe----eE-EEeeecCCCCCEEEE
Q 018472 242 CQPVILDYLASKTVSSNDLVVVSPDVGGVARARAFAKKLSDAPL--AIVDKRRHGHNV----AE-VMNLIGDVKGKVAVM 314 (355)
Q Consensus 242 a~~~La~~L~~~~~~~~~~vVVspd~Ggv~rA~~lA~~L~~~p~--~~v~K~R~~~~~----~e-~~~l~gdVkGK~VLI 314 (355)
....++++|.+++ ..++++||+++.||+.+|+.+++.|+ +++ .++.+.+..... .. .....++++||+|||
T Consensus 25 ~i~~la~~i~~~~-~~~~~viV~i~~gg~~~A~~La~~l~-~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~v~gk~VLI 102 (181)
T PRK09162 25 AIDRMADEITADL-ADENPLVLCVMGGGLVFTGQLLPRLD-FPLEFDYLHATRYRNETTGGELVWKVKPRESLKGRTVLV 102 (181)
T ss_pred HHHHHHHHHHHHc-CCCCeEEEEECCCcHHHHHHHHHHcC-CCcccCEEEEEecCCCccCCceeEecCCCCCCCCCEEEE
Confidence 4577888887764 34567999999999999999999997 664 466666543221 11 123345799999999
Q ss_pred EeCcccchHHHHHHHHHHHHcCCCEEEEEEEc
Q 018472 315 VDDMIDTAGTIAKGAALLHQEGAREVYACCTH 346 (355)
Q Consensus 315 VDDIIdTG~Tl~~aa~~Lk~~GA~~V~v~~tH 346 (355)
||||+|||.|+.++++.|++.||++|++++..
T Consensus 103 VDDIidTG~Tl~~~~~~Lk~~Ga~~V~~avL~ 134 (181)
T PRK09162 103 VDDILDEGHTLAAIRDRCLEMGAAEVYSAVLV 134 (181)
T ss_pred EccccCcHHHHHHHHHHHHhCCCCEEEEEEEE
Confidence 99999999999999999999999999999854
No 25
>PRK15423 hypoxanthine phosphoribosyltransferase; Provisional
Probab=99.53 E-value=1.2e-13 Score=125.07 Aligned_cols=103 Identities=17% Similarity=0.312 Sum_probs=82.4
Q ss_pred chHHHHHHHHhhcCC-CCCeEEEecCCChhHHHHHHHHHcCCCC--EEEEEEeecCC-----CeeEEE-eeecCCCCCEE
Q 018472 242 CQPVILDYLASKTVS-SNDLVVVSPDVGGVARARAFAKKLSDAP--LAIVDKRRHGH-----NVAEVM-NLIGDVKGKVA 312 (355)
Q Consensus 242 a~~~La~~L~~~~~~-~~~~vVVspd~Ggv~rA~~lA~~L~~~p--~~~v~K~R~~~-----~~~e~~-~l~gdVkGK~V 312 (355)
....+|++|.+.+.+ .+++++|++++||+.+|..+++.|+ .+ +.++++.+.+. +...+. .+..+++||+|
T Consensus 17 ~i~~lA~~I~~~~~~~~~~~vvvgI~~Gg~~fa~~L~~~L~-~~~~v~~l~~ssY~~~~~~~~~v~i~~~~~~~v~gk~V 95 (178)
T PRK15423 17 RIAELGRQITERYKDSGSDMVLVGLLRGSFMFMADLCREVQ-VSHEVDFMTASSYGSGMSTTRDVKILKDLDEDIRGKDV 95 (178)
T ss_pred HHHHHHHHHHHHhcccCCCeEEEEEecCChHHHHHHHHHhC-CCcceeEEEEEEecCCCcccCceEEecCCCCCCCCCEE
Confidence 457788888876532 3468999999999999999999997 66 56777776532 122222 33457999999
Q ss_pred EEEeCcccchHHHHHHHHHHHHcCCCEEEEEEE
Q 018472 313 VMVDDMIDTAGTIAKGAALLHQEGAREVYACCT 345 (355)
Q Consensus 313 LIVDDIIdTG~Tl~~aa~~Lk~~GA~~V~v~~t 345 (355)
||||||+|||.||.++.+.|++.|+++|.+++-
T Consensus 96 LlVDDIiDTG~TL~~l~~~l~~~~~~~v~~avL 128 (178)
T PRK15423 96 LIVEDIIDSGNTLSKVREILSLREPKSLAICTL 128 (178)
T ss_pred EEEeeecCchHHHHHHHHHHHhCCCCEEEEEEE
Confidence 999999999999999999999999999988874
No 26
>PRK13809 orotate phosphoribosyltransferase; Provisional
Probab=99.52 E-value=1e-13 Score=128.18 Aligned_cols=138 Identities=18% Similarity=0.231 Sum_probs=97.3
Q ss_pred HHHHHHHHHhCCCEEEEccCCchhhhcc-cCCccccccchHH----HHHHHHhhcCCCCCeEEEecCCChhHHHHHHHHH
Q 018472 205 KLVANLITEAGADRVLACDLHSGQSMGY-FDIPVDHVYCQPV----ILDYLASKTVSSNDLVVVSPDVGGVARARAFAKK 279 (355)
Q Consensus 205 k~vA~lL~~~G~d~VitvDlHs~~~~~~-F~ip~~~l~a~~~----La~~L~~~~~~~~~~vVVspd~Ggv~rA~~lA~~ 279 (355)
+.+..+|.+.|+-+.-.+-+-|++...+ +|. ..+...|. +++.+.+.+.+.+..+|++|+.+|+++|..+|.+
T Consensus 11 ~~l~~~l~~~gal~~g~F~L~SG~~S~~y~D~--~~i~~~p~~l~~i~~~l~~~~~~~~~d~IvG~~~~Gi~~A~~vA~~ 88 (206)
T PRK13809 11 DQAVAILYQIGAIKFGKFILASGEETPIYVDM--RLVISSPEVLQTIATLIWRLRPSFNSSLLCGVPYTALTLATSISLK 88 (206)
T ss_pred HHHHHHHHHcCCEEECCEEECCcCCCCEEEEC--hhhccCHHHHHHHHHHHHHHhccCCCCEEEEecCccHHHHHHHHHH
Confidence 3356666667765555555666665544 443 23333333 3444444332335578999999999999999999
Q ss_pred cCCCCEEEEEEeecCCCeeEEEeeecC-CCCCEEEEEeCcccchHHHHHHHHHHHHcCCCEEEEEEE
Q 018472 280 LSDAPLAIVDKRRHGHNVAEVMNLIGD-VKGKVAVMVDDMIDTAGTIAKGAALLHQEGAREVYACCT 345 (355)
Q Consensus 280 L~~~p~~~v~K~R~~~~~~e~~~l~gd-VkGK~VLIVDDIIdTG~Tl~~aa~~Lk~~GA~~V~v~~t 345 (355)
++ .|+.+++|.++.++..+.+.+.|. .+|++|+||||+++||+|+.++++.|++.|++.+.++|.
T Consensus 89 l~-~p~~~~RK~~K~~G~~~~~~~~g~~~~g~~VlIVDDViTTG~Ti~~a~~~L~~~G~~vv~v~vl 154 (206)
T PRK13809 89 YN-IPMVLRRKELKNVDPSDAIKVEGLFTPGQTCLVINDMVSSGKSIIETAVALEEEGLVVREALVF 154 (206)
T ss_pred hC-CCEEEEeCCCCCCCCcCEEEEccccCCCCEEEEEEeccccCHHHHHHHHHHHHCCCEEEEEEEE
Confidence 97 999999987765543333333454 589999999999999999999999999999986665553
No 27
>PLN02293 adenine phosphoribosyltransferase
Probab=99.51 E-value=1.9e-13 Score=124.58 Aligned_cols=94 Identities=24% Similarity=0.367 Sum_probs=78.0
Q ss_pred CCeEEEecCCChhHHHHHHHHHcCCCCEEEEEEeecCCCee-----------EEEee-ecCC-CCCEEEEEeCcccchHH
Q 018472 258 NDLVVVSPDVGGVARARAFAKKLSDAPLAIVDKRRHGHNVA-----------EVMNL-IGDV-KGKVAVMVDDMIDTAGT 324 (355)
Q Consensus 258 ~~~vVVspd~Ggv~rA~~lA~~L~~~p~~~v~K~R~~~~~~-----------e~~~l-~gdV-kGK~VLIVDDIIdTG~T 324 (355)
+..+|++|+.+|+++|..+|..|+ +|+.+++|.+...... ..+.+ .+++ +|++|+||||+++||+|
T Consensus 62 ~~d~Ivg~e~~Gi~lA~~lA~~Lg-~p~v~~rK~~k~~~~~~~~~~~~~~g~~~l~l~~~~i~~G~rVlIVDDvitTG~T 140 (187)
T PLN02293 62 GISVVAGIEARGFIFGPPIALAIG-AKFVPLRKPGKLPGEVISEEYVLEYGTDCLEMHVGAVEPGERALVIDDLIATGGT 140 (187)
T ss_pred CCCEEEEeCCCchHHHHHHHHHHC-CCEEEEEecCCCCCceEEEEEeccCCceEEEEEcCccCCCCEEEEEeccccchHH
Confidence 456899999999999999999997 8999999877422110 11111 2566 79999999999999999
Q ss_pred HHHHHHHHHHcCCCEEEEEEEcccccCC
Q 018472 325 IAKGAALLHQEGAREVYACCTHAVFRLD 352 (355)
Q Consensus 325 l~~aa~~Lk~~GA~~V~v~~tHglfs~~ 352 (355)
+.++++.|++.|++.+.++|.|.++..+
T Consensus 141 ~~~~~~~l~~~Ga~~v~~~~~~~~~~~~ 168 (187)
T PLN02293 141 LCAAINLLERAGAEVVECACVIELPELK 168 (187)
T ss_pred HHHHHHHHHHCCCEEEEEEEEEEcCCcc
Confidence 9999999999999999999999987743
No 28
>PF00156 Pribosyltran: Phosphoribosyl transferase domain; InterPro: IPR000836 The name PRT comes from phosphoribosyltransferase (PRTase) enzymes, which carry out phosphoryl transfer reactions on 5-phosphoribosyl-alpha1-pyrophosphate PRPP, an activated form of ribose-5-phosphate. Members of Phosphoribosyltransferase (PRT) are catalytic and are regulatory proteins involved in nucleotide synthesis and salvage []. This includes a range of diverse phosphoribosyl transferase enzymes including adenine phosphoribosyltransferase (2.4.2.7 from EC); hypoxanthine-guanine-xanthine phosphoribosyltransferase; hypoxanthine phosphoribosyltransferase (2.4.2.8 from EC); ribose-phosphate pyrophosphokinase (2.7.6.1 from EC); amidophosphoribosyltransferase (2.4.2.14 from EC); orotate phosphoribosyltransferase (2.4.2.10 from EC);uracil phosphoribosyltransferase (2.4.2.9 from EC); and xanthine-guanine phosphoribosyltransferase (2.4.2.22 from EC). Not all PRT proteins are enzymes. For example, in some bacteria PRT proteins regulate the expression of purine and pyrimidine synthetic genes. Members of PRT are defined by the protein fold and by a short 13-residue sequence motif, The motif consists of four hydrophobic amino acids, two acidic amino acids and seven amino acids of variable character, usually including glycine and threonine. The motif has been predicted to be a PRPP-binding site in advance of structural information [, ]. Apart of this motif, different PRT proteins have a low level of sequence identity, less than 15%. The PRT sequence motif is only found in PRTases from the nucleotide synthesis and salvage pathways. Other PRTases, from the tryptophan, histidine and nicotinamide synthetic and salvage pathways, lack the PRT sequence motif and appear to be unrelated to each other and unrelated to the PRT family.; GO: 0009116 nucleoside metabolic process; PDB: 2JBH_A 1Y0B_D 2FXV_B 1GPH_1 1AO0_D 1ORO_B 1VCH_C 2WNS_A 2PRZ_B 2PS1_A ....
Probab=99.51 E-value=2e-13 Score=114.18 Aligned_cols=102 Identities=31% Similarity=0.422 Sum_probs=78.5
Q ss_pred chHHHHHHHHhhcCCCCCeEEEecCCChhHHHHHHHHHcCCCCEEEEEEeec----------CCCeeEE-EeeecCCCCC
Q 018472 242 CQPVILDYLASKTVSSNDLVVVSPDVGGVARARAFAKKLSDAPLAIVDKRRH----------GHNVAEV-MNLIGDVKGK 310 (355)
Q Consensus 242 a~~~La~~L~~~~~~~~~~vVVspd~Ggv~rA~~lA~~L~~~p~~~v~K~R~----------~~~~~e~-~~l~gdVkGK 310 (355)
....++++|.+.. .+...||+++.||+++|..++..|+ .|+.+..+... ..+.... ......++||
T Consensus 13 ~~~~la~~i~~~~--~~~~~ivgi~~~G~~~a~~la~~l~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~gk 89 (125)
T PF00156_consen 13 LAERLAEQIKESG--FDFDVIVGIPRGGIPLAAALARALG-IPLVFVRKRKSYYPGSDKTSREKNNQELFIIDKEDIKGK 89 (125)
T ss_dssp HHHHHHHHHHHHT--TTSSEEEEETTTTHHHHHHHHHHHT-HEEEEEEEEEEEESEEEEEEEETEEEEEEEEESSSGTTS
T ss_pred HHHHHHHHHHHhC--CCCCEEEeehhccHHHHHHHHHHhC-CCccceeeeecccccchhhhhccCceEEeecccccccce
Confidence 3566788887764 3445699999999999999999997 78765543221 1111111 2334568999
Q ss_pred EEEEEeCcccchHHHHHHHHHHHHcCCCEEEEEEEc
Q 018472 311 VAVMVDDMIDTAGTIAKGAALLHQEGAREVYACCTH 346 (355)
Q Consensus 311 ~VLIVDDIIdTG~Tl~~aa~~Lk~~GA~~V~v~~tH 346 (355)
+||||||+++||+|+.++++.|++.|+++|.+++.|
T Consensus 90 ~vliVDDvi~tG~Tl~~~~~~L~~~g~~~v~~~vl~ 125 (125)
T PF00156_consen 90 RVLIVDDVIDTGGTLKEAIELLKEAGAKVVGVAVLV 125 (125)
T ss_dssp EEEEEEEEESSSHHHHHHHHHHHHTTBSEEEEEEEE
T ss_pred eEEEEeeeEcccHHHHHHHHHHHhCCCcEEEEEEEC
Confidence 999999999999999999999999999999999876
No 29
>COG0634 Hpt Hypoxanthine-guanine phosphoribosyltransferase [Nucleotide transport and metabolism]
Probab=99.50 E-value=2.9e-13 Score=121.11 Aligned_cols=101 Identities=21% Similarity=0.312 Sum_probs=83.2
Q ss_pred chHHHHHHHHhhcCCCCCeEEEecCCChhHHHHHHHHHcCCCC--EEEEEEeecCC-----CeeEE-EeeecCCCCCEEE
Q 018472 242 CQPVILDYLASKTVSSNDLVVVSPDVGGVARARAFAKKLSDAP--LAIVDKRRHGH-----NVAEV-MNLIGDVKGKVAV 313 (355)
Q Consensus 242 a~~~La~~L~~~~~~~~~~vVVspd~Ggv~rA~~lA~~L~~~p--~~~v~K~R~~~-----~~~e~-~~l~gdVkGK~VL 313 (355)
....+|++|.+.+ .++++++|+..+|+++|+..+.+++. .+ ++++.-.+.+. +.+++ .++..+++||+||
T Consensus 20 ri~ela~~I~~~y-~g~~~~vv~iLkGs~~F~~dL~r~i~-~~~e~dFm~vSSYg~~t~ssg~v~i~kDld~di~grdVL 97 (178)
T COG0634 20 RIKELAAQITEDY-GGKDPLVVGVLKGSFPFMADLIRAID-FPLEVDFMHVSSYGGGTSSSGEVKILKDLDEDIKGRDVL 97 (178)
T ss_pred HHHHHHHHHHHhh-CCCceEEEEEcccchhhHHHHHHhcC-CCceeEEEEEeccCCCcccCCceEEecccccCCCCCeEE
Confidence 3567888998876 45899999999999999999999986 55 46666555422 22333 3567789999999
Q ss_pred EEeCcccchHHHHHHHHHHHHcCCCEEEEEE
Q 018472 314 MVDDMIDTAGTIAKGAALLHQEGAREVYACC 344 (355)
Q Consensus 314 IVDDIIdTG~Tl~~aa~~Lk~~GA~~V~v~~ 344 (355)
|||||+|||.||.++.+.|+.+||+++.+++
T Consensus 98 iVeDIiDsG~TLs~i~~~l~~r~a~sv~i~t 128 (178)
T COG0634 98 IVEDIIDSGLTLSKVRDLLKERGAKSVRIAT 128 (178)
T ss_pred EEecccccChhHHHHHHHHHhCCCCeEEEEE
Confidence 9999999999999999999999999999876
No 30
>PRK07322 adenine phosphoribosyltransferase; Provisional
Probab=99.49 E-value=2.1e-13 Score=123.23 Aligned_cols=116 Identities=22% Similarity=0.350 Sum_probs=87.6
Q ss_pred hhhcccCCccccccchHHHHHHHHhh----cCCCCCeEEEecCCChhHHHHHHHHHcCCCCEEEEEEeecCC--C-e---
Q 018472 228 QSMGYFDIPVDHVYCQPVILDYLASK----TVSSNDLVVVSPDVGGVARARAFAKKLSDAPLAIVDKRRHGH--N-V--- 297 (355)
Q Consensus 228 ~~~~~F~ip~~~l~a~~~La~~L~~~----~~~~~~~vVVspd~Ggv~rA~~lA~~L~~~p~~~v~K~R~~~--~-~--- 297 (355)
++++.|+++...+...+.+++.+.+. +.+ +..+||+++.||+++|..+++.++ +++.++.|.+... . .
T Consensus 19 ~~~~~~~i~~~k~~~dp~l~~~~~~~La~~l~~-~~d~Iv~v~~gGiplA~~lA~~L~-~p~~~~~k~~~~~~~~~~~~~ 96 (178)
T PRK07322 19 RVGPDLAIALFVILGDTELTEAAAEALAKRLPT-EVDVLVTPETKGIPLAHALSRRLG-KPYVVARKSRKPYMQDPIIQE 96 (178)
T ss_pred EeCCCCEEEEEhhhCCHHHHHHHHHHHHHHcCC-CCCEEEEeccCCHHHHHHHHHHHC-CCEEEEEEeCCCCCCCceEEE
Confidence 35566777888888777766666543 322 456899999999999999999997 8988877765421 0 0
Q ss_pred e--------EEEee----ecCCCCCEEEEEeCcccchHHHHHHHHHHHHcCCCEEEEEEE
Q 018472 298 A--------EVMNL----IGDVKGKVAVMVDDMIDTAGTIAKGAALLHQEGAREVYACCT 345 (355)
Q Consensus 298 ~--------e~~~l----~gdVkGK~VLIVDDIIdTG~Tl~~aa~~Lk~~GA~~V~v~~t 345 (355)
. +...+ ..+++||+|+||||+++||+|+.++++.|++.||+.|.+++.
T Consensus 97 ~~~~~~~~~~~~~~~~~~~~~~~gk~VLIVDDiitTG~Tl~aa~~~L~~~GA~~V~~~~v 156 (178)
T PRK07322 97 VVSITTGKPQLLVLDGADAEKLKGKRVAIVDDVVSTGGTLTALERLVERAGGQVVAKAAI 156 (178)
T ss_pred EEEEEeccceEEEecCccccccCCCEEEEEeccccccHHHHHHHHHHHHcCCEEEEEEEE
Confidence 0 01111 124789999999999999999999999999999998887664
No 31
>PRK02304 adenine phosphoribosyltransferase; Provisional
Probab=99.47 E-value=6.3e-13 Score=119.42 Aligned_cols=110 Identities=21% Similarity=0.241 Sum_probs=81.3
Q ss_pred cccchHHHHHHHH----hhcCCCCCeEEEecCCChhHHHHHHHHHcCCCCEEEEEEeecCCCe-----------eEEEee
Q 018472 239 HVYCQPVILDYLA----SKTVSSNDLVVVSPDVGGVARARAFAKKLSDAPLAIVDKRRHGHNV-----------AEVMNL 303 (355)
Q Consensus 239 ~l~a~~~La~~L~----~~~~~~~~~vVVspd~Ggv~rA~~lA~~L~~~p~~~v~K~R~~~~~-----------~e~~~l 303 (355)
++...|.+.+++. +++.+.+..+||+++.||+.+|..+|+.|+ +|+.+++|.+..... .+.+.+
T Consensus 28 ~l~~~p~~~~~~~~~la~~~~~~~~d~Ivgv~~~Gi~~a~~la~~l~-~p~~~~rk~~~~~~~~~~~~~~~~~~~~~l~l 106 (175)
T PRK02304 28 PLLADPEAFREVIDALVERYKDADIDKIVGIEARGFIFGAALAYKLG-IGFVPVRKPGKLPRETISESYELEYGTDTLEI 106 (175)
T ss_pred hHhcCHHHHHHHHHHHHHHhccCCCCEEEEEccchHHHHHHHHHHhC-CCEEEEEcCCCCCCceEeEEEecccCceEEEE
Confidence 3433444444443 333233457999999999999999999997 999888776542110 112233
Q ss_pred ecC--CCCCEEEEEeCcccchHHHHHHHHHHHHcCCCEEEEEEEcccc
Q 018472 304 IGD--VKGKVAVMVDDMIDTAGTIAKGAALLHQEGAREVYACCTHAVF 349 (355)
Q Consensus 304 ~gd--VkGK~VLIVDDIIdTG~Tl~~aa~~Lk~~GA~~V~v~~tHglf 349 (355)
.++ ++|++|||||||++||+|+.++++.|+++||+.|.++|.+..-
T Consensus 107 ~~~~~~~g~~VLIVDDivtTG~Tl~~~~~~l~~~Ga~~v~v~vl~~~~ 154 (175)
T PRK02304 107 HKDAIKPGDRVLIVDDLLATGGTLEAAIKLLERLGAEVVGAAFVIELP 154 (175)
T ss_pred chhhcCCCCEEEEEeCCccccHHHHHHHHHHHHcCCEEEEEEEEEEcc
Confidence 333 7899999999999999999999999999999999888876643
No 32
>TIGR01367 pyrE_Therm orotate phosphoribosyltransferase, Thermus family. This model represents a distinct clade of orotate phosphoribosyltransferases. Members include the experimentally determined example from Thermus aquaticus and additional examples from Caulobacter crescentus, Helicobacter pylori, Mesorhizobium loti, and related species.
Probab=99.46 E-value=1.3e-12 Score=119.01 Aligned_cols=96 Identities=18% Similarity=0.260 Sum_probs=72.4
Q ss_pred HHHHHHHHhhcCCCCCeEEEecCCChhHHHHHHHHHcCCCCEEEEEEeecCCCeeEEEeeecCCCCCEEEEEeCcccchH
Q 018472 244 PVILDYLASKTVSSNDLVVVSPDVGGVARARAFAKKLSDAPLAIVDKRRHGHNVAEVMNLIGDVKGKVAVMVDDMIDTAG 323 (355)
Q Consensus 244 ~~La~~L~~~~~~~~~~vVVspd~Ggv~rA~~lA~~L~~~p~~~v~K~R~~~~~~e~~~l~gdVkGK~VLIVDDIIdTG~ 323 (355)
..+++++... +.+..+||+++.||+++|..++..|+ +++.+.+|.+. ......-..-.+||+|||||||+|||+
T Consensus 46 ~~La~~i~~~--~~~~d~Ivgi~~gGi~~A~~la~~L~-~~~i~~~k~~~---~~~~~~~~~l~~G~~VLIVDDIi~TG~ 119 (187)
T TIGR01367 46 GELAQKILDY--GLKVDFIVGPAMGGVILGYEVARQLS-VRSIFAEREGG---GMKLRRGFAVKPGEKFVAVEDVVTTGG 119 (187)
T ss_pred HHHHHHHHHh--CCCCCEEEEEccCcHHHHHHHHHHhC-CCeEEEEEeCC---cEEEeecccCCCCCEEEEEEeeecchH
Confidence 3444444321 23567999999999999999999997 89887766552 111111111248999999999999999
Q ss_pred HHHHHHHHHHHcCCCEEEEEEE
Q 018472 324 TIAKGAALLHQEGAREVYACCT 345 (355)
Q Consensus 324 Tl~~aa~~Lk~~GA~~V~v~~t 345 (355)
|+.++++.|++.||+.|.+++.
T Consensus 120 Tl~~a~~~l~~~Ga~vv~~~vl 141 (187)
T TIGR01367 120 SLLEAIRAIEGQGGQVVGLACI 141 (187)
T ss_pred HHHHHHHHHHHcCCeEEEEEEE
Confidence 9999999999999998877764
No 33
>PRK05205 bifunctional pyrimidine regulatory protein PyrR uracil phosphoribosyltransferase; Provisional
Probab=99.46 E-value=4.5e-13 Score=120.67 Aligned_cols=105 Identities=24% Similarity=0.309 Sum_probs=78.9
Q ss_pred chHHHHHHHHhhcCCCCCeEEEecCCChhHHHHHHHHHcC---CC--CEEEEEEe--ecCC---C-eeEE--EeeecCCC
Q 018472 242 CQPVILDYLASKTVSSNDLVVVSPDVGGVARARAFAKKLS---DA--PLAIVDKR--RHGH---N-VAEV--MNLIGDVK 308 (355)
Q Consensus 242 a~~~La~~L~~~~~~~~~~vVVspd~Ggv~rA~~lA~~L~---~~--p~~~v~K~--R~~~---~-~~e~--~~l~gdVk 308 (355)
....|+++|.+.+.+.+++++|+++.||+.++..+++.|+ +. ++.++.+. |.+. + .... ..+.++++
T Consensus 15 ~i~~la~~i~~~~~~~~~~viv~il~gG~~~a~~La~~L~~~~~~~~~~~~l~~~~y~~~~~~~~~~~~~~~~~l~~~v~ 94 (176)
T PRK05205 15 ALTRIAHEIIERNKGLDNLVLVGIKTRGVWLAERLAERLEQLEGVDVPVGELDITLYRDDLTKKGLHPQVKPTDIPFDIE 94 (176)
T ss_pred HHHHHHHHHHHHcCCCCCeEEEEEccCCHHHHHHHHHHHHHHcCCCCccceEEEEEeecCccccCcccccccccCCCCCC
Confidence 3566788887654333678999999999999999999994 23 35555443 3221 1 1111 24556899
Q ss_pred CCEEEEEeCcccchHHHHHHHHHHHHcC-CCEEEEEEEc
Q 018472 309 GKVAVMVDDMIDTAGTIAKGAALLHQEG-AREVYACCTH 346 (355)
Q Consensus 309 GK~VLIVDDIIdTG~Tl~~aa~~Lk~~G-A~~V~v~~tH 346 (355)
||+|||||||+|||+|+.++++.|++.| +++|.+++..
T Consensus 95 gr~VLIVDDIidTG~Tl~~~~~~L~~~G~~~~v~~avL~ 133 (176)
T PRK05205 95 GKRVILVDDVLYTGRTIRAALDALFDYGRPARVQLAVLV 133 (176)
T ss_pred CCEEEEEecccCcHHHHHHHHHHHHhcCCCcEEEEEEEE
Confidence 9999999999999999999999999999 7888888764
No 34
>PLN02238 hypoxanthine phosphoribosyltransferase
Probab=99.44 E-value=1.4e-12 Score=119.10 Aligned_cols=101 Identities=27% Similarity=0.370 Sum_probs=79.6
Q ss_pred chHHHHHHHHhhcCCCCCeEEEecCCChhHHHHHHHHHcCCC---CE--EEEEEeecCC-----CeeEEE--eeecCCCC
Q 018472 242 CQPVILDYLASKTVSSNDLVVVSPDVGGVARARAFAKKLSDA---PL--AIVDKRRHGH-----NVAEVM--NLIGDVKG 309 (355)
Q Consensus 242 a~~~La~~L~~~~~~~~~~vVVspd~Ggv~rA~~lA~~L~~~---p~--~~v~K~R~~~-----~~~e~~--~l~gdVkG 309 (355)
....||++|.+.+ ..++++||++..||+.+|..+++.|+ . ++ .+++..+.+. +..++. .+..+++|
T Consensus 20 ~i~~lA~~I~~~~-~~~~~vivgi~~Gg~~fa~~L~~~L~-~~~~~~~i~fi~~~sy~~~~~~~g~~~i~~~~~~~~v~g 97 (189)
T PLN02238 20 RVAELAAQIASDY-AGKSPVVLGVATGAFMFLADLVRAIQ-PLPRGLTVDFIRASSYGGGTESSGVAKVSGADLKIDVKG 97 (189)
T ss_pred HHHHHHHHHHHHc-CCCCcEEEEEccCCHHHHHHHHHHhC-ccCCCeEEEEEEeeecCCCccccCceeEecCCCCCCCCC
Confidence 3456888888764 34668999999999999999999997 5 54 4666554422 112222 23457999
Q ss_pred CEEEEEeCcccchHHHHHHHHHHHHcCCCEEEEEE
Q 018472 310 KVAVMVDDMIDTAGTIAKGAALLHQEGAREVYACC 344 (355)
Q Consensus 310 K~VLIVDDIIdTG~Tl~~aa~~Lk~~GA~~V~v~~ 344 (355)
|+|||||||+|||.|+.++++.|++.||++|.++|
T Consensus 98 k~VliVDDIidTG~Tl~~~~~~l~~~g~~~v~~av 132 (189)
T PLN02238 98 KHVLLVEDIVDTGNTLSALVAHLEAKGAASVSVCA 132 (189)
T ss_pred CEEEEEecccchHHHHHHHHHHHHhCCCCEEEEEE
Confidence 99999999999999999999999999999999987
No 35
>PRK00455 pyrE orotate phosphoribosyltransferase; Validated
Probab=99.42 E-value=2.6e-12 Score=118.00 Aligned_cols=137 Identities=24% Similarity=0.318 Sum_probs=93.1
Q ss_pred hHHHHHHHHHHhCC----CEEEEccCCchhhhcccCCcc--ccc----cchHHHHHHHHhhcCCCCCeEEEecCCChhHH
Q 018472 203 AAKLVANLITEAGA----DRVLACDLHSGQSMGYFDIPV--DHV----YCQPVILDYLASKTVSSNDLVVVSPDVGGVAR 272 (355)
Q Consensus 203 sak~vA~lL~~~G~----d~VitvDlHs~~~~~~F~ip~--~~l----~a~~~La~~L~~~~~~~~~~vVVspd~Ggv~r 272 (355)
..+.+++.|...|+ +.+++-..|++ .|||... .+- .....+++.+.+.. .+..+||+++.||+++
T Consensus 4 ~~~~~~~~~~~~~a~~~G~f~l~SG~~s~---~y~d~~~i~~~p~~~~~~~~~la~~i~~~~--~~~d~Ivgi~~gG~~~ 78 (202)
T PRK00455 4 YAREFIEFLLEIGALLFGHFTLSSGRKSP---YYFDCRKLLSYPEALALLGRFLAEAIKDSG--IEFDVVAGPATGGIPL 78 (202)
T ss_pred HHHHHHHHHHHcCCeeCCCEEECCCCcCC---eeEeChhhhcCHHHHHHHHHHHHHHHHhcC--CCCCEEEecccCcHHH
Confidence 45678888888876 33433333333 2334210 111 12333444444321 1445899999999999
Q ss_pred HHHHHHHcCCCCEEEEEEeecCCCeeEEEeeec-CCCCCEEEEEeCcccchHHHHHHHHHHHHcCCCEEEEEEEcc
Q 018472 273 ARAFAKKLSDAPLAIVDKRRHGHNVAEVMNLIG-DVKGKVAVMVDDMIDTAGTIAKGAALLHQEGAREVYACCTHA 347 (355)
Q Consensus 273 A~~lA~~L~~~p~~~v~K~R~~~~~~e~~~l~g-dVkGK~VLIVDDIIdTG~Tl~~aa~~Lk~~GA~~V~v~~tHg 347 (355)
|..+|..|+ +|+.+++|.+...+... .+.+ .++|++||||||+++||+|+.++++.|++.||+.+.+++...
T Consensus 79 A~~la~~L~-~~~~~~rk~~~~~g~~~--~~~~~~~~g~~VliVDDvi~tG~Tl~~~~~~l~~~Ga~~v~~~vlv~ 151 (202)
T PRK00455 79 AAAVARALD-LPAIFVRKEAKDHGEGG--QIEGRRLFGKRVLVVEDVITTGGSVLEAVEAIRAAGAEVVGVAVIVD 151 (202)
T ss_pred HHHHHHHhC-CCEEEEecccCCCCCCc--eEEccCCCCCEEEEEecccCCcHHHHHHHHHHHHcCCEEEEEEEEEE
Confidence 999999997 99999888654332111 1223 358999999999999999999999999999999888777654
No 36
>PRK05793 amidophosphoribosyltransferase; Provisional
Probab=99.41 E-value=9.7e-13 Score=135.19 Aligned_cols=109 Identities=21% Similarity=0.189 Sum_probs=79.4
Q ss_pred HHHHHHHHhhcCCCCCeEEEecCCChhHHHHHHHHHcCCCCEEE-EEEeecC--------------CCeeEEEeeecCCC
Q 018472 244 PVILDYLASKTVSSNDLVVVSPDVGGVARARAFAKKLSDAPLAI-VDKRRHG--------------HNVAEVMNLIGDVK 308 (355)
Q Consensus 244 ~~La~~L~~~~~~~~~~vVVspd~Ggv~rA~~lA~~L~~~p~~~-v~K~R~~--------------~~~~e~~~l~gdVk 308 (355)
..+++.|.++... +..+||+...+|..+|..+|+.++ +|+.. +.|.|.. ....+.....++++
T Consensus 275 ~~~G~~La~~~~~-~~D~Vv~vPdsg~~~A~~~A~~lg-ip~~~~l~r~~~~~rtfi~~~q~~R~~~~~~k~~~~~~~v~ 352 (469)
T PRK05793 275 VRAGRQLYKEYPV-DADIVIGVPDSGIPAAIGYAEASG-IPYGIGFIKNKYVGRTFIAPSQELRERAVRVKLNPLKVNVE 352 (469)
T ss_pred HHHHHHHHHhcCC-CCCEEEEcCccHHHHHHHHHHHhC-CCEeeeEEEeeeccccccChhHhhhhhhheEecccCccccC
Confidence 3455666655422 323555555557999999999997 89854 2333210 01111112335789
Q ss_pred CCEEEEEeCcccchHHHHHHHHHHHHcCCCEEEEEEEcccccCCCC
Q 018472 309 GKVAVMVDDMIDTAGTIAKGAALLHQEGAREVYACCTHAVFRLDYK 354 (355)
Q Consensus 309 GK~VLIVDDIIdTG~Tl~~aa~~Lk~~GA~~V~v~~tHglfs~~a~ 354 (355)
||+||||||+|+||.|+.++++.|+++||++|+++++|+.|..+|.
T Consensus 353 gk~VlLVDD~ItTGtTl~~~~~~Lr~aGAk~V~~~~~~p~~~~p~~ 398 (469)
T PRK05793 353 GKRVVLIDDSIVRGTTSKRLVELLRKAGAKEVHFRVSSPPVKYPCY 398 (469)
T ss_pred CCEEEEEccccCchHHHHHHHHHHHHcCCCEEEEEEECCCcCcchh
Confidence 9999999999999999999999999999999999999999998763
No 37
>PRK12560 adenine phosphoribosyltransferase; Provisional
Probab=99.39 E-value=2.8e-12 Score=116.94 Aligned_cols=124 Identities=18% Similarity=0.138 Sum_probs=89.2
Q ss_pred EEEEccCCchhhhcccCCccccccc---hHHHHHHHHhhcCCCCCeEEEecCCChhHHHHHHHHHcCCCCEEEEEEeecC
Q 018472 218 RVLACDLHSGQSMGYFDIPVDHVYC---QPVILDYLASKTVSSNDLVVVSPDVGGVARARAFAKKLSDAPLAIVDKRRHG 294 (355)
Q Consensus 218 ~VitvDlHs~~~~~~F~ip~~~l~a---~~~La~~L~~~~~~~~~~vVVspd~Ggv~rA~~lA~~L~~~p~~~v~K~R~~ 294 (355)
+++.--+|+....+|+++ ..+.. ...+++.+.+.+ +.+..+|++|+.||+++|..+|..++ .|+.+++|.|..
T Consensus 11 ~~~~~~~~~~~~~~~~D~--~~~l~P~~l~~~~~~l~~~~-~~~~D~Ivg~e~~Gi~lA~~vA~~l~-~p~~~~rk~~~~ 86 (187)
T PRK12560 11 RVVNSGKALTTVNEFTDQ--LPALRPKVLKETAKEIIKYI-DKDIDKIVTEEDKGAPLATPVSLLSG-KPLAMARWYPYS 86 (187)
T ss_pred CccCCCCCCCcceeEEeC--hhhcCHHHHHHHHHHHHHHh-CCCCCEEEEEccccHHHHHHHHHhhC-CCEEEeccCCCc
Confidence 666666777766667663 23333 223333444433 44557999999999999999999997 899999887643
Q ss_pred CCe------------eE-EEeeecCCCCCEEEEEeCcccchHHHHHHHHHHHHcCCCEEEEEEE
Q 018472 295 HNV------------AE-VMNLIGDVKGKVAVMVDDMIDTAGTIAKGAALLHQEGAREVYACCT 345 (355)
Q Consensus 295 ~~~------------~e-~~~l~gdVkGK~VLIVDDIIdTG~Tl~~aa~~Lk~~GA~~V~v~~t 345 (355)
... .+ .+.+.+..+|++||||||+++||+|+.++++.|+++||..+.++|.
T Consensus 87 ~~~~~~~~~~~~~~~~eg~~~~~~~~~G~rVlIVDDvitTG~T~~~ai~ll~~aGa~vv~v~~v 150 (187)
T PRK12560 87 LSELNYNVVEIGSEYFEGVVYLNGIEKGDRVAIIDDTLSTGGTVIALIKAIENSGGIVSDVICV 150 (187)
T ss_pred ccceeEEeeeeeccceeeeeEccCCCCcCEEEEEEeccccCHHHHHHHHHHHHCCCEEEEEEEE
Confidence 210 11 1233345689999999999999999999999999999998776653
No 38
>TIGR01090 apt adenine phosphoribosyltransferase. A phylogenetic analysis suggested omitting the bi-directional best hit homologs from the spirochetes from the seed for this model and making only tentative predictions of adenine phosphoribosyltransferase function for this lineage.
Probab=99.39 E-value=4.4e-12 Score=113.44 Aligned_cols=100 Identities=23% Similarity=0.284 Sum_probs=73.6
Q ss_pred HHHHHHhhcCCCCCeEEEecCCChhHHHHHHHHHcCCCCEEEEEEeecCCC-----------eeEEEeee--cCCCCCEE
Q 018472 246 ILDYLASKTVSSNDLVVVSPDVGGVARARAFAKKLSDAPLAIVDKRRHGHN-----------VAEVMNLI--GDVKGKVA 312 (355)
Q Consensus 246 La~~L~~~~~~~~~~vVVspd~Ggv~rA~~lA~~L~~~p~~~v~K~R~~~~-----------~~e~~~l~--gdVkGK~V 312 (355)
+++.|.+++.+.+..+|++++.+|+.+|..+++.|+ +|+..+.|++.... ..+.+.+. ...+||+|
T Consensus 34 ~~~~la~~i~~~~~d~ivgi~~~G~~~A~~la~~L~-~~~~~i~k~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~gk~V 112 (169)
T TIGR01090 34 LIDLLVERYKDANIDYIVGPEARGFIFGAALAYKLG-VGFVPVRKPGKLPGETISASYDLEYGKDQLEIHKDAIKPGQRV 112 (169)
T ss_pred HHHHHHHHhccCCCCEEEeehhccHHHHHHHHHHHC-CCEEEEEeCCCCCCceeeeEEeeccCceEEEEehhhcCCcCEE
Confidence 344444443333456999999999999999999997 89877766542110 00111221 13589999
Q ss_pred EEEeCcccchHHHHHHHHHHHHcCCCEEEEEEEc
Q 018472 313 VMVDDMIDTAGTIAKGAALLHQEGAREVYACCTH 346 (355)
Q Consensus 313 LIVDDIIdTG~Tl~~aa~~Lk~~GA~~V~v~~tH 346 (355)
||||||++||+|+.++++.|+++||+.|.+++.=
T Consensus 113 LIVDDIitTG~Tl~~a~~~L~~~Ga~~v~~~~l~ 146 (169)
T TIGR01090 113 LIVDDLLATGGTAEATDELIRKLGGEVVEAAFLI 146 (169)
T ss_pred EEEeccccchHHHHHHHHHHHHcCCEEEEEEEEE
Confidence 9999999999999999999999999988877753
No 39
>PTZ00271 hypoxanthine-guanine phosphoribosyltransferase; Provisional
Probab=99.38 E-value=3.6e-12 Score=118.28 Aligned_cols=104 Identities=14% Similarity=0.201 Sum_probs=80.1
Q ss_pred chHHHHHHHHhhcCC-----CCCeEEEecCCChhHHHHHHHHHcC--CCC--EEEEEEeecCC-----CeeEE-EeeecC
Q 018472 242 CQPVILDYLASKTVS-----SNDLVVVSPDVGGVARARAFAKKLS--DAP--LAIVDKRRHGH-----NVAEV-MNLIGD 306 (355)
Q Consensus 242 a~~~La~~L~~~~~~-----~~~~vVVspd~Ggv~rA~~lA~~L~--~~p--~~~v~K~R~~~-----~~~e~-~~l~gd 306 (355)
....||++|.+.+.+ .+++++|++.+||+.+|..+++.|+ +.+ +.+++-.+.+. +...+ ..+..+
T Consensus 36 ~i~~LA~~I~~~~~~~~~~~~~~~vivgVlkGg~~fa~dL~r~L~~~~~~~~vdfi~vssY~~~~~s~g~~~i~~~~~~~ 115 (211)
T PTZ00271 36 ATAKCAKKIAEDYRSFKLTTENPLYLLCVLKGSFIFTADLARFLADEGVPVKVEFICASSYGTGVETSGQVRMLLDVRDS 115 (211)
T ss_pred HHHHHHHHHHHHhhhccccCCCCeEEEEEcCCCHHHHHHHHHHhcccCCCeeEEEEEEEecCCCCcccCceEEecCCCCC
Confidence 457788888876532 3478999999999999999999995 234 45665444321 11222 244557
Q ss_pred CCCCEEEEEeCcccchHHHHHHHHHHHHcCCCEEEEEEE
Q 018472 307 VKGKVAVMVDDMIDTAGTIAKGAALLHQEGAREVYACCT 345 (355)
Q Consensus 307 VkGK~VLIVDDIIdTG~Tl~~aa~~Lk~~GA~~V~v~~t 345 (355)
++||+|||||||+|||.||.++.+.|++.|+++|.+++-
T Consensus 116 i~gk~VLIVDDIvDTG~TL~~v~~~l~~~~p~svk~avL 154 (211)
T PTZ00271 116 VENRHILIVEDIVDSAITLQYLMRFMLAKKPASLKTVVL 154 (211)
T ss_pred CCCCEEEEEecccCCHHHHHHHHHHHHhcCCCEEEEEEE
Confidence 999999999999999999999999999999999998884
No 40
>PRK13810 orotate phosphoribosyltransferase; Provisional
Probab=99.36 E-value=9.4e-12 Score=113.53 Aligned_cols=136 Identities=24% Similarity=0.351 Sum_probs=96.0
Q ss_pred HHHHHHHHHHhCCCEEEEccCCchhhhcc-cCCccccccchHHHHHHH----HhhcCCCCCeEEEecCCChhHHHHHHHH
Q 018472 204 AKLVANLITEAGADRVLACDLHSGQSMGY-FDIPVDHVYCQPVILDYL----ASKTVSSNDLVVVSPDVGGVARARAFAK 278 (355)
Q Consensus 204 ak~vA~lL~~~G~d~VitvDlHs~~~~~~-F~ip~~~l~a~~~La~~L----~~~~~~~~~~vVVspd~Ggv~rA~~lA~ 278 (355)
.+.+.++|.+.|+-+.-.+-|-|++...+ ||. ..+...|.+.+.+ .+.+.+.+-..|+++..+|+++|..+|.
T Consensus 16 ~~~l~~~l~~~ga~~~g~F~L~SG~~s~~yiD~--~~~~~~p~~~~~i~~~la~~~~~~~~d~I~g~~~~GiplA~~vA~ 93 (187)
T PRK13810 16 KQELIAALKACGAVRYGDFTLSSGKKSKYYIDI--KKASTDPKTLKLIARQAALRIKEMDVDTVAGVELGGVPLATAVSL 93 (187)
T ss_pred HHHHHHHHHHCCCeEecCEEEcCCCcCCEEEEC--chhcCCHHHHHHHHHHHHHHhccCCCCEEEEEccchHHHHHHHHH
Confidence 44577788887774444455566665544 453 2333344444433 3333233446899999999999999999
Q ss_pred HcCCCCEEEEEEeecCCCeeEEEeeecCC-CCCEEEEEeCcccchHHHHHHHHHHHHcCCCEEEEEE
Q 018472 279 KLSDAPLAIVDKRRHGHNVAEVMNLIGDV-KGKVAVMVDDMIDTAGTIAKGAALLHQEGAREVYACC 344 (355)
Q Consensus 279 ~L~~~p~~~v~K~R~~~~~~e~~~l~gdV-kGK~VLIVDDIIdTG~Tl~~aa~~Lk~~GA~~V~v~~ 344 (355)
.++ .|+.+++|....+..... ..|.+ +|++|+||||+++||+|+.++++.|++.|+.-+.+++
T Consensus 94 ~l~-~p~v~vRK~~k~~g~~~~--~~g~~~~g~rVlIVDDVitTGgS~~~~i~~l~~~Ga~V~~v~v 157 (187)
T PRK13810 94 ETG-LPLLIVRKSVKDYGTGSR--FVGDLKPEDRIVMLEDVTTSGGSVREAIEVVREAGAYIKYVIT 157 (187)
T ss_pred HhC-CCEEEEecCCCccCCCce--EEccCCCcCEEEEEEeccCCChHHHHHHHHHHHCCCEEEEEEE
Confidence 997 999999987654432221 24543 7999999999999999999999999999998665554
No 41
>PRK00129 upp uracil phosphoribosyltransferase; Reviewed
Probab=99.35 E-value=6.3e-12 Score=116.33 Aligned_cols=88 Identities=23% Similarity=0.391 Sum_probs=76.3
Q ss_pred CCeEEEecCCChhHHHHHHHHHcCCCCEEEEEEeecCCCe--eE-EEeeecCCCCCEEEEEeCcccchHHHHHHHHHHHH
Q 018472 258 NDLVVVSPDVGGVARARAFAKKLSDAPLAIVDKRRHGHNV--AE-VMNLIGDVKGKVAVMVDDMIDTAGTIAKGAALLHQ 334 (355)
Q Consensus 258 ~~~vVVspd~Ggv~rA~~lA~~L~~~p~~~v~K~R~~~~~--~e-~~~l~gdVkGK~VLIVDDIIdTG~Tl~~aa~~Lk~ 334 (355)
+++++|+++.||..++..+++.++.+++.++.++|+..+. .. ...+.++++||+|||||||++||+|+..+++.|++
T Consensus 70 ~~~vvV~IlrgG~~~~~~l~~~l~~~~~~~i~~~r~~~t~~~~~~~~~lp~~i~~~~VllvDd~laTG~Tl~~ai~~L~~ 149 (209)
T PRK00129 70 KKLVIVPILRAGLGMVDGVLKLIPSARVGHIGLYRDEETLEPVEYYVKLPEDIDERTVIVVDPMLATGGSAIAAIDLLKK 149 (209)
T ss_pred CeEEEEEEeCCCHHHHHHHHHhCCcCeeeeEEEEeCCCCCCCEEEEeeCCCcCCCCEEEEECCcccchHHHHHHHHHHHH
Confidence 5689999999999999999999976788888888864321 11 23567789999999999999999999999999999
Q ss_pred cCCCEEEEEEE
Q 018472 335 EGAREVYACCT 345 (355)
Q Consensus 335 ~GA~~V~v~~t 345 (355)
+|+++|.+++.
T Consensus 150 ~G~~~I~~~~l 160 (209)
T PRK00129 150 RGAKNIKVLCL 160 (209)
T ss_pred cCCCEEEEEEE
Confidence 99999999987
No 42
>PRK02277 orotate phosphoribosyltransferase-like protein; Provisional
Probab=99.34 E-value=8.3e-12 Score=114.84 Aligned_cols=88 Identities=27% Similarity=0.344 Sum_probs=70.4
Q ss_pred CCeEEEecCCChhHHHHHHHHHcCCCCEEEEEEeecCCCe---eE-EE-eeecCCCCCEEEEEeCcccchHHHHHHHHHH
Q 018472 258 NDLVVVSPDVGGVARARAFAKKLSDAPLAIVDKRRHGHNV---AE-VM-NLIGDVKGKVAVMVDDMIDTAGTIAKGAALL 332 (355)
Q Consensus 258 ~~~vVVspd~Ggv~rA~~lA~~L~~~p~~~v~K~R~~~~~---~e-~~-~l~gdVkGK~VLIVDDIIdTG~Tl~~aa~~L 332 (355)
+..+||+++.||+++|..+|..|+ .++.++.+++..++. .+ .. ...++++||+|+||||+++||+|+.++++.|
T Consensus 85 ~~D~Ivgi~~gG~~~A~~lA~~L~-~~~~~~~~~k~~~~~~~~~~~~~~~~~~~~~gk~VlIVDDVitTG~Tl~~ai~~l 163 (200)
T PRK02277 85 EVDVVVGIAKSGVPLATLVADELG-KDLAIYHPKKWDHGEGEKKTGSFSRNFASVEGKRCVIVDDVITSGTTMKETIEYL 163 (200)
T ss_pred CCCEEEeeccCCHHHHHHHHHHhC-CCcEEEecccccccccccccceeccccccCCcCEEEEEeeccCchHHHHHHHHHH
Confidence 446899999999999999999997 898877665532211 11 11 1224689999999999999999999999999
Q ss_pred HHcCCCEEEEEEEc
Q 018472 333 HQEGAREVYACCTH 346 (355)
Q Consensus 333 k~~GA~~V~v~~tH 346 (355)
++.||+.+.+++..
T Consensus 164 ~~~Ga~~v~v~vlv 177 (200)
T PRK02277 164 KEHGGKPVAVVVLI 177 (200)
T ss_pred HHcCCEEEEEEEEE
Confidence 99999999888743
No 43
>TIGR00336 pyrE orotate phosphoribosyltransferase. The conserved Lys (K) residue at position 101 of the seed alignment has been proposed as the active site for the enzyme.
Probab=99.34 E-value=5.7e-12 Score=113.27 Aligned_cols=85 Identities=26% Similarity=0.431 Sum_probs=69.1
Q ss_pred CCCeEEEecCCChhHHHHHHHHHcCCCC-----EEEEEEeecCCCeeEEEeeecCC-CCCEEEEEeCcccchHHHHHHHH
Q 018472 257 SNDLVVVSPDVGGVARARAFAKKLSDAP-----LAIVDKRRHGHNVAEVMNLIGDV-KGKVAVMVDDMIDTAGTIAKGAA 330 (355)
Q Consensus 257 ~~~~vVVspd~Ggv~rA~~lA~~L~~~p-----~~~v~K~R~~~~~~e~~~l~gdV-kGK~VLIVDDIIdTG~Tl~~aa~ 330 (355)
.+..+|++|+.||+++|..+|..|+ .| +.+++|.+....... ...|++ +|++||||||+++||+|+.++++
T Consensus 53 ~~~d~Ivg~~~gG~~~A~~la~~l~-~~~~~~~~~~~rk~~k~~g~~~--~~~g~~~~g~~VlIVDDvi~TG~Tl~~a~~ 129 (173)
T TIGR00336 53 LEFDVIAGPALGGIPIATAVSVKLA-KPGGDIPLCFNRKEAKDHGEGG--NIEGELLEGDKVVVVEDVITTGTSILEAVE 129 (173)
T ss_pred CCCCEEEccccChHHHHHHHHHHhc-CcCCCceEEEEcCCcccCCCCC--ceecCCCCCCEEEEEeccccChHHHHHHHH
Confidence 3567999999999999999999997 88 888887764332211 123444 79999999999999999999999
Q ss_pred HHHHcCCCEEEEEE
Q 018472 331 LLHQEGAREVYACC 344 (355)
Q Consensus 331 ~Lk~~GA~~V~v~~ 344 (355)
.|++.|++.+.++|
T Consensus 130 ~l~~~Ga~v~~~~v 143 (173)
T TIGR00336 130 IIQAAGGQVAGVII 143 (173)
T ss_pred HHHHcCCeEEEEEE
Confidence 99999998766655
No 44
>PTZ00149 hypoxanthine phosphoribosyltransferase; Provisional
Probab=99.31 E-value=1.8e-11 Score=115.71 Aligned_cols=103 Identities=17% Similarity=0.170 Sum_probs=78.9
Q ss_pred chHHHHHHHHhhcCCCCCeEEEecCCChhHHHHHHHHHcCC----------CCE---EEEEEeecCC----CeeEEE-ee
Q 018472 242 CQPVILDYLASKTVSSNDLVVVSPDVGGVARARAFAKKLSD----------APL---AIVDKRRHGH----NVAEVM-NL 303 (355)
Q Consensus 242 a~~~La~~L~~~~~~~~~~vVVspd~Ggv~rA~~lA~~L~~----------~p~---~~v~K~R~~~----~~~e~~-~l 303 (355)
....||.+|.+.+ ..+++++|++.+||+.++..+.+.|.. .+. .+++-.+... +.+.+. ..
T Consensus 66 rI~~LA~~I~~dy-~~~~~vilgILkGg~~FaadL~~~L~~~~~~~~~~~~~~~~~~dfi~vsSY~~~~s~g~v~i~~~~ 144 (241)
T PTZ00149 66 RVEKLAYDIKQVY-GNEELHILCILKGSRGFFSALVDYLNRIHNYSSTESPKPPYQEHYVRVKSYCNDESTGKLEIVSDD 144 (241)
T ss_pred HHHHHHHHHHHHc-CCCCeEEEEECCCCHHHHHHHHHHHhhhhhccccccCcccccccEEEEEEccCCCcCCceEEeccc
Confidence 4567888888765 467899999999999999999998852 122 5554433211 122222 33
Q ss_pred ecCCCCCEEEEEeCcccchHHHHHHHHHHHHcCCCEEEEEEE
Q 018472 304 IGDVKGKVAVMVDDMIDTAGTIAKGAALLHQEGAREVYACCT 345 (355)
Q Consensus 304 ~gdVkGK~VLIVDDIIdTG~Tl~~aa~~Lk~~GA~~V~v~~t 345 (355)
..+++||+|||||||+|||.|+.++++.|++.|+++|.+++.
T Consensus 145 ~~~l~gk~VLIVDDIidTG~Tl~~~~~~L~~~g~~~V~va~L 186 (241)
T PTZ00149 145 LSCLKDKHVLIVEDIIDTGNTLVKFCEYLKKFEPKTIRIATL 186 (241)
T ss_pred ccccCCCEEEEEEeEeChHHHHHHHHHHHHhcCCCEEEEEEE
Confidence 347899999999999999999999999999999999998885
No 45
>TIGR01091 upp uracil phosphoribosyltransferase. that includes uracil phosphoribosyltransferase, uridine kinases, and other, uncharacterized proteins.
Probab=99.27 E-value=3.2e-11 Score=111.48 Aligned_cols=88 Identities=20% Similarity=0.344 Sum_probs=75.9
Q ss_pred CCeEEEecCCChhHHHHHHHHHcCCCCEEEEEEeecCCCe--eE-EEeeecCCCCCEEEEEeCcccchHHHHHHHHHHHH
Q 018472 258 NDLVVVSPDVGGVARARAFAKKLSDAPLAIVDKRRHGHNV--AE-VMNLIGDVKGKVAVMVDDMIDTAGTIAKGAALLHQ 334 (355)
Q Consensus 258 ~~~vVVspd~Ggv~rA~~lA~~L~~~p~~~v~K~R~~~~~--~e-~~~l~gdVkGK~VLIVDDIIdTG~Tl~~aa~~Lk~ 334 (355)
+++++|++..||..++..+.+.+..+++.++.++|+..+. .. ...+..+++||+|||||||++||+|+.++++.|++
T Consensus 68 ~~i~~V~ILrgg~~~~~~l~~~l~~~~v~~i~~~r~~~t~~~~~~~~~lp~~i~~~~VllvDd~laTG~Tl~~ai~~L~~ 147 (207)
T TIGR01091 68 KKIVLVPILRAGLGMVDGVLKLIPEAKVGHVGAYRNEETLKPVPYYSKLPEDIDERTVIVLDPMLATGGTMIAALDLLKK 147 (207)
T ss_pred CcEEEEEEeCCcHHHHHHHHHhCCcCceeEEEEEeCCCCCCCEEEEecCCCCCCCCEEEEECCCccchHHHHHHHHHHHH
Confidence 4689999999999999999999986788888888864321 11 23566789999999999999999999999999999
Q ss_pred cCCCEEEEEEE
Q 018472 335 EGAREVYACCT 345 (355)
Q Consensus 335 ~GA~~V~v~~t 345 (355)
+|+++|.+++.
T Consensus 148 ~G~~~I~v~~l 158 (207)
T TIGR01091 148 RGAKKIKVLSI 158 (207)
T ss_pred cCCCEEEEEEE
Confidence 99999999887
No 46
>PRK11595 DNA utilization protein GntX; Provisional
Probab=99.27 E-value=3.6e-12 Score=119.27 Aligned_cols=146 Identities=26% Similarity=0.297 Sum_probs=88.6
Q ss_pred eEEEEeeCcccccccc---ccCCCCcchHHHHHHHHHH-----------hCCCEEEEccCCchhh-hcccCCccccccch
Q 018472 179 NITAVIPYFGYARADR---KTQGRESIAAKLVANLITE-----------AGADRVLACDLHSGQS-MGYFDIPVDHVYCQ 243 (355)
Q Consensus 179 ~ItlViPY~~YaRqDr---~~~~ge~isak~vA~lL~~-----------~G~d~VitvDlHs~~~-~~~F~ip~~~l~a~ 243 (355)
.+..+..|=+..|+=- |+ .|+.--++.++++|.. ..+|.|+.|++|..+. +.-||. .
T Consensus 63 ~~~a~~~Y~g~~r~lI~~~Ky-~~~~~l~~~l~~~l~~~~~~~~~~~~~~~~d~ivpVPl~~~r~~~RGfnq-------~ 134 (227)
T PRK11595 63 RLVFVSDYAPPLSGLIHQLKF-SRRSELASVLARLLLLEWLQARRSTGLQKPDRIISVPLHQRRHWRRGFNQ-------S 134 (227)
T ss_pred heeeeeecccHHHHHHHHHHH-CccHHHHHHHHHHHHHHHHHHhhhhcccCCCeEEecCCCHHHHHHCCCCH-------H
Confidence 4556666766556421 33 3455556777776632 1468999999999764 445674 5
Q ss_pred HHHHHHHHhhcCCCCCeEEEecCCChhHHHHHHHHHcCCCCEEEEEEeecCCCeeEEEeeecCCCCCEEEEEeCcccchH
Q 018472 244 PVILDYLASKTVSSNDLVVVSPDVGGVARARAFAKKLSDAPLAIVDKRRHGHNVAEVMNLIGDVKGKVAVMVDDMIDTAG 323 (355)
Q Consensus 244 ~~La~~L~~~~~~~~~~vVVspd~Ggv~rA~~lA~~L~~~p~~~v~K~R~~~~~~e~~~l~gdVkGK~VLIVDDIIdTG~ 323 (355)
.++++.+.+.. +. .++.+.+.+.+....+.+ +. .++|. .+....+.+.++++||+|||||||+|||.
T Consensus 135 ~~la~~la~~~-~~------~~~~~~l~r~~~~~~q~~-l~----~~~R~-~n~~~~f~~~~~~~~~~vllvDDv~tTG~ 201 (227)
T PRK11595 135 DLLCRPLARWL-GC------DYDSEALTRTRATATQHF-LS----ARLRK-RNLKNAFRLELPVQGQHMAIVDDVVTTGS 201 (227)
T ss_pred HHHHHHHHHHH-CC------CCcccceEEecCCCCccc-CC----HHHHh-hhhhhhhccCCCCCCCEEEEEeeeecchH
Confidence 66777776543 11 011111222111111111 00 01121 11112234456799999999999999999
Q ss_pred HHHHHHHHHHHcCCCEEEEEEE
Q 018472 324 TIAKGAALLHQEGAREVYACCT 345 (355)
Q Consensus 324 Tl~~aa~~Lk~~GA~~V~v~~t 345 (355)
|+.++++.|++.|+++|++++.
T Consensus 202 Tl~~~~~~L~~~g~~~V~~~~l 223 (227)
T PRK11595 202 TVAEIAQLLLRNGAASVQVWCL 223 (227)
T ss_pred HHHHHHHHHHHcCCcEEEEEEE
Confidence 9999999999999999999873
No 47
>PRK09219 xanthine phosphoribosyltransferase; Validated
Probab=99.22 E-value=1.3e-10 Score=106.30 Aligned_cols=99 Identities=16% Similarity=0.220 Sum_probs=74.0
Q ss_pred HHHHHHHhhcCCCCCeEEEecCCChhHHHHHHHHHcCCCCEEEEEEeecCC---Cee------------EEEeeecC-C-
Q 018472 245 VILDYLASKTVSSNDLVVVSPDVGGVARARAFAKKLSDAPLAIVDKRRHGH---NVA------------EVMNLIGD-V- 307 (355)
Q Consensus 245 ~La~~L~~~~~~~~~~vVVspd~Ggv~rA~~lA~~L~~~p~~~v~K~R~~~---~~~------------e~~~l~gd-V- 307 (355)
.+++.+.+.+.+.+..+|++++.+|+++|..+|.+|+ .|+.+++|..+.. +.. ..+.+..+ +
T Consensus 37 ~i~~~la~~~~~~~~D~Ivg~e~~GiplA~~lA~~Lg-~p~v~vRK~~k~~~~~~~~~~~~~~~~~~~~~~l~i~~~~i~ 115 (189)
T PRK09219 37 EIGKEFARRFKDEGITKILTIEASGIAPAVMAALALG-VPVVFAKKKKSLTLTDDVYTATVYSFTKQVTSTVSVSKKFLS 115 (189)
T ss_pred HHHHHHHHHhccCCCCEEEEEccccHHHHHHHHHHHC-CCEEEEEECCCCCCCCceEEEEEeeeccCceEEEEEEhhhCC
Confidence 3344444443333456899999999999999999997 9999999876432 111 11223332 3
Q ss_pred CCCEEEEEeCcccchHHHHHHHHHHHHcCCCEEEEEE
Q 018472 308 KGKVAVMVDDMIDTAGTIAKGAALLHQEGAREVYACC 344 (355)
Q Consensus 308 kGK~VLIVDDIIdTG~Tl~~aa~~Lk~~GA~~V~v~~ 344 (355)
+|++|+||||+++||+|+.++++++++.||.-+.+++
T Consensus 116 ~G~rVlIVDDviaTGgT~~a~~~lv~~aGa~vvgv~~ 152 (189)
T PRK09219 116 EGDRVLIIDDFLANGQAALGLIDIIEQAGAKVAGIGI 152 (189)
T ss_pred CCCEEEEEeehhhcChHHHHHHHHHHHCCCEEEEEEE
Confidence 7999999999999999999999999999998766555
No 48
>TIGR01744 XPRTase xanthine phosphoribosyltransferase. This model represent a xanthine-specific phosphoribosyltransferase of Bacillus subtilis and closely related proteins from other species, mostly from other Gram-positive bacteria. The adjacent gene is a xanthine transporter; B. subtilis can import xanthine for the purine salvage pathway or for catabolism to obtain nitrogen.
Probab=99.21 E-value=1.5e-10 Score=105.93 Aligned_cols=101 Identities=15% Similarity=0.199 Sum_probs=76.9
Q ss_pred hHHHHHHHHhhcCCCCCeEEEecCCChhHHHHHHHHHcCCCCEEEEEEeecCCC---ee------------EEEeeecC-
Q 018472 243 QPVILDYLASKTVSSNDLVVVSPDVGGVARARAFAKKLSDAPLAIVDKRRHGHN---VA------------EVMNLIGD- 306 (355)
Q Consensus 243 ~~~La~~L~~~~~~~~~~vVVspd~Ggv~rA~~lA~~L~~~p~~~v~K~R~~~~---~~------------e~~~l~gd- 306 (355)
...+++.+.+++.+.+..+|++++.+|+++|..+|..|+ +|+.+++|...... .+ ..+.+.++
T Consensus 35 l~~v~~~l~~~~~~~~~d~Vv~~ea~Gi~la~~lA~~Lg-~p~v~vRK~~k~~~~~~~~~~~~~s~~~~~~~~l~i~~~~ 113 (191)
T TIGR01744 35 MQEVGEEFARRFADDGITKIVTIEASGIAPAIMTGLKLG-VPVVFARKKKPLTLTDNLLTASVHSFTKQTTSTVAVSGEF 113 (191)
T ss_pred HHHHHHHHHHHhccCCCCEEEEEccccHHHHHHHHHHHC-CCEEEEEeCCCCCCCCcceEEEEEEeecCccEEEEEEHHh
Confidence 344555555554333456899999999999999999997 99999998754221 11 11233343
Q ss_pred C-CCCEEEEEeCcccchHHHHHHHHHHHHcCCCEEEEEE
Q 018472 307 V-KGKVAVMVDDMIDTAGTIAKGAALLHQEGAREVYACC 344 (355)
Q Consensus 307 V-kGK~VLIVDDIIdTG~Tl~~aa~~Lk~~GA~~V~v~~ 344 (355)
+ +|++|+||||+++||+|+.++++++++.||.-+.++|
T Consensus 114 l~~G~rVLIVDDvvtTGgT~~a~~~ll~~aGa~Vvgv~~ 152 (191)
T TIGR01744 114 LSDQDRVLIIDDFLANGQAAHGLVDIAKQAGAKIAGIGI 152 (191)
T ss_pred CCCcCEEEEEEehhccChHHHHHHHHHHHCCCEEEEEEE
Confidence 4 7999999999999999999999999999998776666
No 49
>TIGR01743 purR_Bsub pur operon repressor, Bacillus subtilis type. This model represents the puring operon repressor PurR of low-GC Gram-positive bacteria. This homodimeric repressor contains a large region homologous to phosphoribosyltransferases and is inhibited by 5-phosphoribosyl 1-pyrophosphate.
Probab=99.21 E-value=8.3e-10 Score=105.89 Aligned_cols=162 Identities=22% Similarity=0.301 Sum_probs=103.3
Q ss_pred HHHHHHHHHhcCCCeEEEE------eeCccccccccccCCCCcchHHHHHHHHHHhCCCEEEEccCCchhhhcccCCccc
Q 018472 165 LLIMIDACRRASAKNITAV------IPYFGYARADRKTQGRESIAAKLVANLITEAGADRVLACDLHSGQSMGYFDIPVD 238 (355)
Q Consensus 165 Lll~idalr~~~a~~ItlV------iPY~~YaRqDr~~~~ge~isak~vA~lL~~~G~d~VitvDlHs~~~~~~F~ip~~ 238 (355)
|.++-+++...|..++..+ +=|.|+.-.+.. +.+ ...+++.|...+ +++.= +|+. ..
T Consensus 42 ~~i~~~~~~~~~~g~~~t~~ga~ggv~~~p~~~~~~~----~~~-~~~l~~~l~~~~--rilpg--------g~~~--~s 104 (268)
T TIGR01743 42 IVIIKETFEKFGIGKLLTVPGAAGGVKYIPKMSQAEA----EEF-VEELCQSLSEPE--RILPG--------GYLY--LT 104 (268)
T ss_pred HHHHHHHHHhcCCceEEEeCCCCCCeEEEeCCCHHHH----HHH-HHHHHHHHHHCC--CcccC--------CeEE--ec
Confidence 4677788888887777654 223333332211 112 455666666643 33310 1111 01
Q ss_pred cccch----HHHHHHHHhhcCCCCCeEEEecCCChhHHHHHHHHHcCCCCEEEEEEeecCC--------------CeeEE
Q 018472 239 HVYCQ----PVILDYLASKTVSSNDLVVVSPDVGGVARARAFAKKLSDAPLAIVDKRRHGH--------------NVAEV 300 (355)
Q Consensus 239 ~l~a~----~~La~~L~~~~~~~~~~vVVspd~Ggv~rA~~lA~~L~~~p~~~v~K~R~~~--------------~~~e~ 300 (355)
.+... ..+++.+.+.+.+.+..+|++++.+|+++|..+|..|+ +|+.+++|..+.. +.++.
T Consensus 105 ~ll~~P~~l~~ig~~la~~~~~~~iD~VvgvetkGIpLA~avA~~L~-vp~vivRK~~K~t~g~~vs~nY~sgs~~~ie~ 183 (268)
T TIGR01743 105 DILGKPSILSKIGKILASVFAEREIDAVMTVATKGIPLAYAVASVLN-VPLVIVRKDSKVTEGSTVSINYVSGSSNRIQT 183 (268)
T ss_pred hhhcCHHHHHHHHHHHHHHhcCCCCCEEEEEccchHHHHHHHHHHHC-CCEEEEEECCCCCCCCcEEEEEEcccCccceE
Confidence 11122 33344444443333456999999999999999999997 9999999876421 11223
Q ss_pred Eeeec-CC-CCCEEEEEeCcccchHHHHHHHHHHHHcCCCEEEEEE
Q 018472 301 MNLIG-DV-KGKVAVMVDDMIDTAGTIAKGAALLHQEGAREVYACC 344 (355)
Q Consensus 301 ~~l~g-dV-kGK~VLIVDDIIdTG~Tl~~aa~~Lk~~GA~~V~v~~ 344 (355)
+.+.. .+ +|++|+||||+++||+|+..+++++++.||.-+.+++
T Consensus 184 m~l~k~~l~~G~rVLIVDDv~~TGgTi~a~i~Ll~e~Ga~VvGv~v 229 (268)
T TIGR01743 184 MSLAKRSLKTGSKVLIIDDFMKAGGTINGMINLLDEFDAEVAGIGV 229 (268)
T ss_pred EEEehhhCCCcCEEEEEeeecccCHHHHHHHHHHHHCCCEEEEEEE
Confidence 33322 23 7999999999999999999999999999998776665
No 50
>PRK08558 adenine phosphoribosyltransferase; Provisional
Probab=99.20 E-value=1.7e-10 Score=108.93 Aligned_cols=100 Identities=24% Similarity=0.239 Sum_probs=74.5
Q ss_pred HHHHHHHhhcCCCCCeEEEecCCChhHHHHHHHHHcCCCCEEEEEEeecCCC-------------eeEEEeee-cC-CCC
Q 018472 245 VILDYLASKTVSSNDLVVVSPDVGGVARARAFAKKLSDAPLAIVDKRRHGHN-------------VAEVMNLI-GD-VKG 309 (355)
Q Consensus 245 ~La~~L~~~~~~~~~~vVVspd~Ggv~rA~~lA~~L~~~p~~~v~K~R~~~~-------------~~e~~~l~-gd-VkG 309 (355)
.+++.+.+.+.+.+..+|++++.+|+++|..+|..|+ +|+.+++|.+.... ..+.+.+. .. .+|
T Consensus 98 ~v~~~la~~~~~~~~D~Vvtv~~~GI~lA~~lA~~L~-~p~vi~Rk~~~~~~~~~v~~y~s~s~~~~~~~~l~~~~l~~G 176 (238)
T PRK08558 98 LIAPVVAERFMGLRVDVVLTAATDGIPLAVAIASYFG-ADLVYAKKSKETGVEKFYEEYQRLASGIEVTLYLPASALKKG 176 (238)
T ss_pred HHHHHHHHHccCCCCCEEEEECcccHHHHHHHHHHHC-cCEEEEEecCCCCCcceEEEeeccCCCceeEEEecHHHcCCc
Confidence 3444444444333446899999999999999999997 99999887653111 11122222 12 589
Q ss_pred CEEEEEeCcccchHHHHHHHHHHHHcCCCEEEEEEE
Q 018472 310 KVAVMVDDMIDTAGTIAKGAALLHQEGAREVYACCT 345 (355)
Q Consensus 310 K~VLIVDDIIdTG~Tl~~aa~~Lk~~GA~~V~v~~t 345 (355)
++||||||+++||+|+..+++++++.||+.+.+++.
T Consensus 177 ~rVLIVDDvi~TG~Tl~~~~~ll~~~ga~vvgv~vl 212 (238)
T PRK08558 177 DRVLIVDDIIRSGETQRALLDLARQAGADVVGVFFL 212 (238)
T ss_pred CEEEEEecccccCHHHHHHHHHHHHcCCEEEEEEEE
Confidence 999999999999999999999999999998776663
No 51
>PRK05500 bifunctional orotidine 5'-phosphate decarboxylase/orotate phosphoribosyltransferase protein; Validated
Probab=99.20 E-value=1.5e-10 Score=119.07 Aligned_cols=172 Identities=17% Similarity=0.214 Sum_probs=111.1
Q ss_pred hhHHHHHHHHHHHHHhc---CCCeEEEEeeCccccccccccCCCCcchHHHHHHHHHHhCCCEEEEccCCchhhhcc-cC
Q 018472 159 NENLMELLIMIDACRRA---SAKNITAVIPYFGYARADRKTQGRESIAAKLVANLITEAGADRVLACDLHSGQSMGY-FD 234 (355)
Q Consensus 159 nd~lmELll~idalr~~---~a~~ItlViPY~~YaRqDr~~~~ge~isak~vA~lL~~~G~d~VitvDlHs~~~~~~-F~ 234 (355)
.+...+|---++..|.. +..+-.+-.|-.+...|+. -+.+++.|-..|+=+.--+-+-|++...| +|
T Consensus 248 ~~~a~~l~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~---------~~~l~~~l~~~~al~fG~F~L~SG~~S~~YiD 318 (477)
T PRK05500 248 KEQVKSLREEINQIRQQIVQESSSCDLWTPDVCLLNQHP---------HQDLILQLYDIGCLLFGEYVQASGATFSYYID 318 (477)
T ss_pred HHHHHHHHHHHHHHHHHhcccCCcccccCccccccccCc---------HHHHHHHHHHCCCeEeCcEEECCcCcCCEEEE
Confidence 44555555555555542 1123345566666555532 23466666666764433444556655543 34
Q ss_pred CccccccchHHHH----HHHHhhcCCCCCeEEEecCCChhHHHHHHHHHcCCCCEEEEEEeecCCCeeEEEeeecCC-CC
Q 018472 235 IPVDHVYCQPVIL----DYLASKTVSSNDLVVVSPDVGGVARARAFAKKLSDAPLAIVDKRRHGHNVAEVMNLIGDV-KG 309 (355)
Q Consensus 235 ip~~~l~a~~~La----~~L~~~~~~~~~~vVVspd~Ggv~rA~~lA~~L~~~p~~~v~K~R~~~~~~e~~~l~gdV-kG 309 (355)
. ..+...|.+. +.+.+.+.+.+-..|++|..||+++|..+|..++ .|+.+++|+.+.++... .+.|.+ +|
T Consensus 319 ~--~~lls~P~~l~~v~~~la~~l~~~~~D~I~Gia~gGiPlAt~lA~~lg-~p~v~vRKe~K~~G~~~--~ieG~~~~G 393 (477)
T PRK05500 319 L--RKIISNPQLFHQVLSAYAEILKNLTFDRIAGIPYGSLPTATGLALHLH-HPMIFPRKEVKAHGTRR--LIEGNFHPG 393 (477)
T ss_pred C--hhhhcCHHHHHHHHHHHHHHhccCCCCEEEEEccchHHHHHHHHHHhC-CCEEEEecCcCccCCCc--eEecCCCCc
Confidence 2 2333334333 3333333233345899999999999999999997 89999998866554322 235555 79
Q ss_pred CEEEEEeCcccchHHHHHHHHHHHHcCCCEEEEEE
Q 018472 310 KVAVMVDDMIDTAGTIAKGAALLHQEGAREVYACC 344 (355)
Q Consensus 310 K~VLIVDDIIdTG~Tl~~aa~~Lk~~GA~~V~v~~ 344 (355)
++|+||||+++||+|+.++++.|++.|++-+.+++
T Consensus 394 ~rVlIVDDViTTGgSi~eaie~l~~aG~~V~~v~v 428 (477)
T PRK05500 394 ETVVVVDDILITGKSVMEGAEKLKSAGLNVRDIVV 428 (477)
T ss_pred CEEEEEEeccccCHHHHHHHHHHHHCCCEEEEEEE
Confidence 99999999999999999999999999998655544
No 52
>COG0461 PyrE Orotate phosphoribosyltransferase [Nucleotide transport and metabolism]
Probab=99.19 E-value=3.1e-10 Score=104.45 Aligned_cols=136 Identities=31% Similarity=0.441 Sum_probs=91.8
Q ss_pred HHHHHHHHHhCCCEEEEccCCchhhhccc-CCccccccchHHHHHHHH----hhcCC-CCCeEEEecCCChhHHHHHHHH
Q 018472 205 KLVANLITEAGADRVLACDLHSGQSMGYF-DIPVDHVYCQPVILDYLA----SKTVS-SNDLVVVSPDVGGVARARAFAK 278 (355)
Q Consensus 205 k~vA~lL~~~G~d~VitvDlHs~~~~~~F-~ip~~~l~a~~~La~~L~----~~~~~-~~~~vVVspd~Ggv~rA~~lA~ 278 (355)
+.+++++-..|+-+---+-+-|++...|| |.. .+...|.+++.+. +...+ .+..+|++|..||++.|..+|.
T Consensus 4 ~~~~~~l~~~~a~~fG~f~LsSG~~SpyY~d~~--~~~~~p~~~~~i~~~~a~~~~~~~~~d~v~G~a~ggiP~A~~~a~ 81 (201)
T COG0461 4 RELAELLLEKGALKFGEFTLSSGRKSPYYVDLR--LFLTGPELLQLIAFALAEIIKEALEFDVVAGPALGGIPLAAATAL 81 (201)
T ss_pred HHHHHHHHHcCCeecCceeecCCCcCCeEEecc--cccCCHHHHHHHHHHHHHHhhccCCCcEEEeccccchHHHHHHHH
Confidence 45666665567644444446777666544 532 2233344443332 22222 2456999999999999999999
Q ss_pred HcCCCC-EEEEEEeecCCCeeEEEeeec-CCCCCEEEEEeCcccchHHHHHHHHHHHHcCCCEEEEEE
Q 018472 279 KLSDAP-LAIVDKRRHGHNVAEVMNLIG-DVKGKVAVMVDDMIDTAGTIAKGAALLHQEGAREVYACC 344 (355)
Q Consensus 279 ~L~~~p-~~~v~K~R~~~~~~e~~~l~g-dVkGK~VLIVDDIIdTG~Tl~~aa~~Lk~~GA~~V~v~~ 344 (355)
.|...+ +.+++|+.++++... .+.| ..+|++|+||||++|||+++.++++.|+++|+.-+.++|
T Consensus 82 ~l~~~~~~~~~Rke~K~hG~~~--~ieG~~~~G~kVvvVEDViTTG~Si~eai~~l~~~G~~V~gv~~ 147 (201)
T COG0461 82 ALAHLPPMAYVRKEAKDHGTGG--LIEGGEVKGEKVVVVEDVITTGGSILEAVEALREAGAEVVGVAV 147 (201)
T ss_pred HhccCCcEEEEeceeccCCCcc--eeEecCCCCCEEEEEEecccCCHhHHHHHHHHHHcCCeEEEEEE
Confidence 983013 778888766655421 2233 358999999999999999999999999999998655444
No 53
>TIGR00201 comF comF family protein. This protein is found in species that do (Bacillus subtilis, Haemophilus influenzae) or do not (E. coli, Borrelia burgdorferi) have described systems for natural transformation with exogenous DNA. It is involved in competence for transformation in Bacillus subtilis.
Probab=99.16 E-value=5.7e-10 Score=101.56 Aligned_cols=125 Identities=20% Similarity=0.268 Sum_probs=74.7
Q ss_pred CCCcchHHHHHHHHHH----h---CCCEEEEccCCchhh-hcccCCccccccchHHHHHHHHhhcCCCCCeEEEecCCCh
Q 018472 198 GRESIAAKLVANLITE----A---GADRVLACDLHSGQS-MGYFDIPVDHVYCQPVILDYLASKTVSSNDLVVVSPDVGG 269 (355)
Q Consensus 198 ~ge~isak~vA~lL~~----~---G~d~VitvDlHs~~~-~~~F~ip~~~l~a~~~La~~L~~~~~~~~~~vVVspd~Gg 269 (355)
.|+.--++.++++|.. . ..|.|+.|++|..+. +.-||. ..+|++.+........+.+.
T Consensus 55 ~~~~~l~~~l~~~l~~~~~~~~~~~~~~ivpVP~~~~r~~~RGfnq-------~~~la~~l~~~~~~~~~~l~------- 120 (190)
T TIGR00201 55 RGQAEIIRALASLLSLTVSKAYRDLPDVIVPVPLSKEREWRRGFNQ-------ADLLAQCLSRWLFNYHNIVI------- 120 (190)
T ss_pred CCChHHHHHHHHHHHHHHHhhccCCCCEEEeCCCCHHHHHHhCCCH-------HHHHHHHHHHHhCCCcceEE-------
Confidence 3444456667766543 1 248899999998764 445674 56777777654211111111
Q ss_pred hHHHHHHHHHcCCCCEEEEEEeecCCCeeEEEeeec-CCCCCEEEEEeCcccchHHHHHHHHHHHHcCCCEEEEEEE
Q 018472 270 VARARAFAKKLSDAPLAIVDKRRHGHNVAEVMNLIG-DVKGKVAVMVDDMIDTAGTIAKGAALLHQEGAREVYACCT 345 (355)
Q Consensus 270 v~rA~~lA~~L~~~p~~~v~K~R~~~~~~e~~~l~g-dVkGK~VLIVDDIIdTG~Tl~~aa~~Lk~~GA~~V~v~~t 345 (355)
+.+. ..+-+ +. .++|. .|....+.+.+ +++||+|||||||+|||.|+.++++.|++.||++|++++.
T Consensus 121 --r~~~-~~Q~~-l~----~~~R~-~n~~~~f~~~~~~~~~~~vllvDDV~TTGaTl~~~~~~L~~~Ga~~V~~~~l 188 (190)
T TIGR00201 121 --RLNN-ETQSK-LK----ATLRF-LNLENAFDLKNNSFQGRNIVLVDDVVTTGATLHEIARLLLELGAASVQVWTL 188 (190)
T ss_pred --Eecc-ccccc-CC----HHHHH-HHHhCcEEccCCCCCCCEEEEEeeeeccHHHHHHHHHHHHHcCCCEEEEEEE
Confidence 1111 00000 00 01111 01111233333 4889999999999999999999999999999999999873
No 54
>PRK09213 pur operon repressor; Provisional
Probab=99.14 E-value=2.7e-09 Score=102.56 Aligned_cols=98 Identities=27% Similarity=0.302 Sum_probs=73.6
Q ss_pred HHHHHHhhcCCCCCeEEEecCCChhHHHHHHHHHcCCCCEEEEEEeecC-CC-------------eeEEEeeec-CC-CC
Q 018472 246 ILDYLASKTVSSNDLVVVSPDVGGVARARAFAKKLSDAPLAIVDKRRHG-HN-------------VAEVMNLIG-DV-KG 309 (355)
Q Consensus 246 La~~L~~~~~~~~~~vVVspd~Ggv~rA~~lA~~L~~~p~~~v~K~R~~-~~-------------~~e~~~l~g-dV-kG 309 (355)
+++.+.+.+.+.+..+|++++.+|+++|..+|..|+ .|+.+++|..+. .+ .++.+.+.. .+ +|
T Consensus 118 i~~~la~~~~~~~iD~Vvtvet~GIplA~~vA~~L~-vp~vivRK~~K~~~G~~vs~~y~sgs~~~ie~m~L~~~~l~~G 196 (271)
T PRK09213 118 IGRIIASAFADKKIDAVMTVETKGIPLAYAVANYLN-VPFVIVRRDSKVTEGSTVSINYVSGSSKRIETMSLSKRSLKEG 196 (271)
T ss_pred HHHHHHHHhcccCCCEEEEEccccHHHHHHHHHHHC-CCEEEEEECCCCCCCCcEEEEEEecccccceEEEEeHhhcCCc
Confidence 344444444333456899999999999999999997 999999886542 11 112222222 24 69
Q ss_pred CEEEEEeCcccchHHHHHHHHHHHHcCCCEEEEEE
Q 018472 310 KVAVMVDDMIDTAGTIAKGAALLHQEGAREVYACC 344 (355)
Q Consensus 310 K~VLIVDDIIdTG~Tl~~aa~~Lk~~GA~~V~v~~ 344 (355)
.+|+||||+++||+|+..+++++++.||.-+.+++
T Consensus 197 ~rVLIVDDv~~TGgTi~a~i~Ll~e~Ga~VvGv~v 231 (271)
T PRK09213 197 SRVLIVDDFMKAGGTINGMISLLKEFDAEVVGIGV 231 (271)
T ss_pred CEEEEEeeecccCHhHHHHHHHHHHCCCEEEEEEE
Confidence 99999999999999999999999999998766655
No 55
>COG0503 Apt Adenine/guanine phosphoribosyltransferases and related PRPP-binding proteins [Nucleotide transport and metabolism]
Probab=99.12 E-value=6.3e-10 Score=100.86 Aligned_cols=97 Identities=30% Similarity=0.353 Sum_probs=74.2
Q ss_pred HHHHhhcCCCCCeEEEecCCChhHHHHHHHHHcCCCCEEEEEEeecCCC-e----------eEEEeeecC-C-CCCEEEE
Q 018472 248 DYLASKTVSSNDLVVVSPDVGGVARARAFAKKLSDAPLAIVDKRRHGHN-V----------AEVMNLIGD-V-KGKVAVM 314 (355)
Q Consensus 248 ~~L~~~~~~~~~~vVVspd~Ggv~rA~~lA~~L~~~p~~~v~K~R~~~~-~----------~e~~~l~gd-V-kGK~VLI 314 (355)
+++.+.+.+.+-..||++..+|+.+|..+|.+|+ +|+.+++|.+.... . .+.+.+..+ + +|++|+|
T Consensus 43 ~~~~~~~~~~~id~Iv~iea~Gi~~a~~vA~~Lg-vp~v~vRK~~kl~~~~~~~~~~~~~~~~~l~~~~~~l~~G~rVlI 121 (179)
T COG0503 43 DELAERYKDDGIDKIVTIEARGIPLAAAVALELG-VPFVPVRKKGKLPEESVVETYYLEYGSETLELHKDALKPGDRVLI 121 (179)
T ss_pred HHHHHHhcccCCCEEEEEccccchhHHHHHHHhC-CCEEEEEecCCCCCcceeEEEEEeccceEEEEEhhhCCCCCEEEE
Confidence 3444443333456899999999999999999997 99999998764211 0 122233333 2 6999999
Q ss_pred EeCcccchHHHHHHHHHHHHcCCCEEEEEEE
Q 018472 315 VDDMIDTAGTIAKGAALLHQEGAREVYACCT 345 (355)
Q Consensus 315 VDDIIdTG~Tl~~aa~~Lk~~GA~~V~v~~t 345 (355)
|||+++||+|+..+.+++.+.|+.-+.+++.
T Consensus 122 VDDllaTGgT~~a~~~Ll~~~ga~vvg~~~~ 152 (179)
T COG0503 122 VDDLLATGGTALALIELLEQAGAEVVGAAFV 152 (179)
T ss_pred EecchhcChHHHHHHHHHHHCCCEEEEEEEE
Confidence 9999999999999999999999998777654
No 56
>PRK09123 amidophosphoribosyltransferase; Provisional
Probab=99.12 E-value=6.7e-10 Score=114.56 Aligned_cols=105 Identities=29% Similarity=0.271 Sum_probs=80.3
Q ss_pred HHHHHHHHhhcCCCCCeEEEecCCChhHHHHHHHHHcCCCCEE--EEEEeecCC------------CeeEE-Eeeec-CC
Q 018472 244 PVILDYLASKTVSSNDLVVVSPDVGGVARARAFAKKLSDAPLA--IVDKRRHGH------------NVAEV-MNLIG-DV 307 (355)
Q Consensus 244 ~~La~~L~~~~~~~~~~vVVspd~Ggv~rA~~lA~~L~~~p~~--~v~K~R~~~------------~~~e~-~~l~g-dV 307 (355)
..+++.|.++.. .+..+||++..+|...|..+++.++ +|+. ++ |.|... ..++. .+... .+
T Consensus 282 ~~~g~~La~~~~-~~~D~Vv~VP~sg~~~A~~la~~lg-ip~~~~li-r~~y~grt~i~~~q~~r~~~v~~k~~~~~~~~ 358 (479)
T PRK09123 282 KNIGRELARESP-VDADVVVPVPDSGVPAAIGYAQESG-IPFELGII-RNHYVGRTFIQPTQQIRNLGVKLKHNANRAVI 358 (479)
T ss_pred HHHHHHHHHhCC-CCCeEEEEcCccHHHHHHHHHHhcC-CCeeheEE-EEeecCccccccccccccccEEEEeccccccc
Confidence 356666665542 3456899999999999999999997 8875 33 333210 11111 12223 37
Q ss_pred CCCEEEEEeCcccchHHHHHHHHHHHHcCCCEEEEEE-----EcccccC
Q 018472 308 KGKVAVMVDDMIDTAGTIAKGAALLHQEGAREVYACC-----THAVFRL 351 (355)
Q Consensus 308 kGK~VLIVDDIIdTG~Tl~~aa~~Lk~~GA~~V~v~~-----tHglfs~ 351 (355)
+||+||||||+++||.|+.++++.|+++||++|++++ +|+.|.+
T Consensus 359 ~gk~vvlvDD~i~tG~Tl~~~~~~l~~~Ga~~v~~~~~~p~~~~~~~~g 407 (479)
T PRK09123 359 EGKRVVLVDDSIVRGTTSRKIVQMLRDAGAKEVHLRIASPPITHPCFYG 407 (479)
T ss_pred CCCEEEEEeceeCchHHHHHHHHHHHHcCCCEEEEEEcCCCCccceeec
Confidence 8999999999999999999999999999999999999 9999988
No 57
>PLN02440 amidophosphoribosyltransferase
Probab=99.10 E-value=7.5e-10 Score=114.25 Aligned_cols=112 Identities=26% Similarity=0.317 Sum_probs=79.3
Q ss_pred ccCCcccccc------chHHHHHHHHhhcCCCCCeEEEecCCChhHHHHHHHHHcCCCCEE--EEEEeecCC--------
Q 018472 232 YFDIPVDHVY------CQPVILDYLASKTVSSNDLVVVSPDVGGVARARAFAKKLSDAPLA--IVDKRRHGH-------- 295 (355)
Q Consensus 232 ~F~ip~~~l~------a~~~La~~L~~~~~~~~~~vVVspd~Ggv~rA~~lA~~L~~~p~~--~v~K~R~~~-------- 295 (355)
||..|...+. ....+++.|.+... .+..+||++..++..+|..+++.++ +|+. ++ |.|...
T Consensus 244 Yf~~p~s~~~g~~~y~~r~~~g~~La~~~~-~~~d~vvpVP~s~~~~A~~la~~lg-iP~~~~lv-r~ry~~rt~i~~~q 320 (479)
T PLN02440 244 YFARPNSIVFGRSVYESRLEFGEILATEIP-VDCDVVIPVPDSGRVAALGYAAKLG-VPFQQGLI-RSHYVGRTFIEPSQ 320 (479)
T ss_pred eecCCCccccCeEhHHHHHHHHHHHHHhcC-CCCCEEEEeCCcHHHHHHHHHHHhC-CCchhheE-EEeeccccccCcch
Confidence 4555554333 23456666666542 2445788888889999999999997 8874 33 333210
Q ss_pred ----CeeE-EEe-eecCCCCCEEEEEeCcccchHHHHHHHHHHHHcCCCEEEEEEEc
Q 018472 296 ----NVAE-VMN-LIGDVKGKVAVMVDDMIDTAGTIAKGAALLHQEGAREVYACCTH 346 (355)
Q Consensus 296 ----~~~e-~~~-l~gdVkGK~VLIVDDIIdTG~Tl~~aa~~Lk~~GA~~V~v~~tH 346 (355)
.... ... ....++||+||||||+++||.|+.++++.|+++||++|++++.=
T Consensus 321 ~~r~~~~~~k~~~~~~~v~gk~VlLVDDiittGtTl~~i~~~L~~aGa~~V~v~v~~ 377 (479)
T PLN02440 321 KIRDFSVKLKLNPVRSVLEGKRVVVVDDSIVRGTTSSKIVRMLREAGAKEVHMRIAS 377 (479)
T ss_pred hhhhhhheeeeecccccccCceEEEEeceeCcHHHHHHHHHHHHhcCCCEEEEEEEC
Confidence 0011 112 22468999999999999999999999999999999999998873
No 58
>PRK06031 phosphoribosyltransferase; Provisional
Probab=99.09 E-value=1.2e-09 Score=102.91 Aligned_cols=100 Identities=21% Similarity=0.240 Sum_probs=69.5
Q ss_pred HHHHHHHHhhcCCCCCeEEEecCCChhHHHHHHHHHcCCCC-EEEEEEeecC---C------------CeeEEEeee---
Q 018472 244 PVILDYLASKTVSSNDLVVVSPDVGGVARARAFAKKLSDAP-LAIVDKRRHG---H------------NVAEVMNLI--- 304 (355)
Q Consensus 244 ~~La~~L~~~~~~~~~~vVVspd~Ggv~rA~~lA~~L~~~p-~~~v~K~R~~---~------------~~~e~~~l~--- 304 (355)
..+++.|.+++.+.+..+||++..+|+.+|..+|..|+ .+ +..+.|.|+. + +..+.+.+.
T Consensus 70 ~~la~~La~~~~~~~~DvIVgv~~~Gi~lA~~lA~~Lg-~~~~vpl~~~rK~~~~~~l~~~~~sitt~~~~~~~~l~~~~ 148 (233)
T PRK06031 70 DALAEHLAEKARAFDPDVVAGLPTLGLTLAAAVARKLG-HTRYVPLGTSRKFWYRDELSVPLSSITTPDQGKRLYIDPRM 148 (233)
T ss_pred HHHHHHHHHHcccCCCcEEEEeccCCHHHHHHHHHHHC-CCCceEEEEccccccccccccceeeeeccCccceEEecccc
Confidence 34666666654334557999999999999999999997 43 3333322211 0 001111121
Q ss_pred -cCCCCCEEEEEeCcccchHHHHHHHHHHHHcCCCEEEEEE
Q 018472 305 -GDVKGKVAVMVDDMIDTAGTIAKGAALLHQEGAREVYACC 344 (355)
Q Consensus 305 -gdVkGK~VLIVDDIIdTG~Tl~~aa~~Lk~~GA~~V~v~~ 344 (355)
..++|++|+||||+++||+|+.+++++|++.|++.+.+++
T Consensus 149 ~~~~~GkrVLIVDDVitTG~Tl~aa~~lL~~~Ga~Vvgv~v 189 (233)
T PRK06031 149 LPLLEGRRVALIDDVISSGASIVAGLRLLAACGIEPAGIGA 189 (233)
T ss_pred cccCCCCEEEEEEeEccccHHHHHHHHHHHHcCCeEEEEEE
Confidence 2368999999999999999999999999999998655444
No 59
>PRK08341 amidophosphoribosyltransferase; Provisional
Probab=99.06 E-value=9.4e-10 Score=112.42 Aligned_cols=103 Identities=26% Similarity=0.295 Sum_probs=73.2
Q ss_pred HHHHHHHHhhcCCCCCeEEEecCCChhHHHHHHHHHcCCCCEEE-EEEeecC-------C--Ce---eEEEeeecCCCCC
Q 018472 244 PVILDYLASKTVSSNDLVVVSPDVGGVARARAFAKKLSDAPLAI-VDKRRHG-------H--NV---AEVMNLIGDVKGK 310 (355)
Q Consensus 244 ~~La~~L~~~~~~~~~~vVVspd~Ggv~rA~~lA~~L~~~p~~~-v~K~R~~-------~--~~---~e~~~l~gdVkGK 310 (355)
..+.++|.+......+.++..||.|. .+|..+|+.++ +|+.. +.|.|.. . +. .+...+.+.++||
T Consensus 258 ~~~G~~La~~~~~~~D~Vv~VPdsg~-~~A~~~a~~lg-ip~~~~l~k~r~~~rtfi~~~qr~~~~~~k~~~~~~~v~gk 335 (442)
T PRK08341 258 YRMGVELARESPAEGDVVIAVPDSGR-TAALGFAHESG-IPYMEGLIKNRYIGRTFIMPSGRELKVKLKLSPVREVINGK 335 (442)
T ss_pred HHHHHHhhcccCCCCceEEEecCchH-HHHHHHHHHhC-CCchheEEEeccccccccCcCchhhhheeeecccccccCCC
Confidence 35666666554322344555555555 79999999997 89853 6666531 0 00 0111334568999
Q ss_pred EEEEEeCcccchHHHHHHHHHHHHcCCCEEEEEEEccc
Q 018472 311 VAVMVDDMIDTAGTIAKGAALLHQEGAREVYACCTHAV 348 (355)
Q Consensus 311 ~VLIVDDIIdTG~Tl~~aa~~Lk~~GA~~V~v~~tHgl 348 (355)
+|+||||+|+||.|+.++++.|+++||++|++.++-+-
T Consensus 336 ~VlLVDD~IttGtTl~~~~~~L~~aGAk~V~~~~~spp 373 (442)
T PRK08341 336 RVVLVDDSIVRGTTMKRIVKMLRDAGAREVHVRIASPP 373 (442)
T ss_pred EEEEEeeeeccHHHHHHHHHHHHhcCCcEEEEEEcCCC
Confidence 99999999999999999999999999999999876543
No 60
>COG0856 Orotate phosphoribosyltransferase homologs [Nucleotide transport and metabolism]
Probab=99.05 E-value=1.2e-09 Score=97.81 Aligned_cols=87 Identities=32% Similarity=0.405 Sum_probs=69.1
Q ss_pred CCCeEEEecCCChhHHHHHHHHHcCCCCEEEEE--EeecCCCe--eE-EEeeecCCCCCEEEEEeCcccchHHHHHHHHH
Q 018472 257 SNDLVVVSPDVGGVARARAFAKKLSDAPLAIVD--KRRHGHNV--AE-VMNLIGDVKGKVAVMVDDMIDTAGTIAKGAAL 331 (355)
Q Consensus 257 ~~~~vVVspd~Ggv~rA~~lA~~L~~~p~~~v~--K~R~~~~~--~e-~~~l~gdVkGK~VLIVDDIIdTG~Tl~~aa~~ 331 (355)
.+-.+||++...|+++|..+|..|+ .++.+.+ |.|...+. .. +....+.|+||+|+||||+++||.|+.++++.
T Consensus 85 ~evDvVvGIa~sGvPlAtmvA~elg-~elaiY~PrK~~~de~~~~~G~iS~NFa~V~gK~cvIVDDvittG~Ti~E~Ie~ 163 (203)
T COG0856 85 FEVDVVVGIAISGVPLATMVAYELG-KELAIYHPRKHRKDEGAGKGGSISSNFASVEGKRCVIVDDVITTGSTIKETIEQ 163 (203)
T ss_pred ceeEEEEEEeecCccHHHHHHHHhC-CceEEEecccccccccCCcCceeecccccccCceEEEEecccccChhHHHHHHH
Confidence 4557999999999999999999997 8887664 44443221 11 11334579999999999999999999999999
Q ss_pred HHHcCCCEEEEEE
Q 018472 332 LHQEGAREVYACC 344 (355)
Q Consensus 332 Lk~~GA~~V~v~~ 344 (355)
|++.|++.+.+.+
T Consensus 164 lke~g~kpv~v~V 176 (203)
T COG0856 164 LKEEGGKPVLVVV 176 (203)
T ss_pred HHHcCCCcEEEEE
Confidence 9999998776654
No 61
>COG1040 ComFC Predicted amidophosphoribosyltransferases [General function prediction only]
Probab=99.05 E-value=5.8e-10 Score=104.54 Aligned_cols=123 Identities=21% Similarity=0.330 Sum_probs=77.3
Q ss_pred CcchHHHHHHHHHH------hCCCEEEEccCCchh-hhcccCCccccccchHHHHHHHHhhcCCCCCeEEEecCCChhHH
Q 018472 200 ESIAAKLVANLITE------AGADRVLACDLHSGQ-SMGYFDIPVDHVYCQPVILDYLASKTVSSNDLVVVSPDVGGVAR 272 (355)
Q Consensus 200 e~isak~vA~lL~~------~G~d~VitvDlHs~~-~~~~F~ip~~~l~a~~~La~~L~~~~~~~~~~vVVspd~Ggv~r 272 (355)
+..-++.+|++|.. .-+|.|+.|++|..+ ++.-||+ ...|++.+...+ ..+. ...+
T Consensus 90 ~~~l~~~la~~l~~~~~~~~~~~~~iVpVPls~~r~~~RGFNQ-------~~~la~~l~~~~---~~~~-------~~~r 152 (225)
T COG1040 90 DLDLAKLLARLLAKALDDFLEKPDLIVPVPLSPSRLLERGFNQ-------SELLARALARRL---GKPI-------ALRR 152 (225)
T ss_pred chhHHHHHHHHHHHHHhhccccCCeEEEecCCHHHHHHcCCCH-------HHHHHHHHHHHh---CchH-------HHHH
Confidence 33445666665543 235799999999765 5667785 678888887653 1111 1112
Q ss_pred HHHHHHHcCCCCEEEEEEeecCCCeeEEEeeecCCCC-CEEEEEeCcccchHHHHHHHHHHHHcCCCEEEEEEE
Q 018472 273 ARAFAKKLSDAPLAIVDKRRHGHNVAEVMNLIGDVKG-KVAVMVDDMIDTAGTIAKGAALLHQEGAREVYACCT 345 (355)
Q Consensus 273 A~~lA~~L~~~p~~~v~K~R~~~~~~e~~~l~gdVkG-K~VLIVDDIIdTG~Tl~~aa~~Lk~~GA~~V~v~~t 345 (355)
.+.-..+-+ .-.++|. .|....+.+.+.++. |+|+|||||+|||.|+.++++.|++.||++|.+++.
T Consensus 153 ~k~~~~q~~-----l~~~~rr-~nl~~aF~~~~~~~~~~~vlLvDDV~TTGaTl~~~~~~L~~~Ga~~v~~~~l 220 (225)
T COG1040 153 VKDTSPQQG-----LKALERR-RNLKGAFRLKKGIEEPKNVLLVDDVYTTGATLKEAAKLLREAGAKRVFVLTL 220 (225)
T ss_pred Hhccccccc-----cchHHHH-HhccCCeecCCCCCCCCeEEEEecccccHHHHHHHHHHHHHcCCceEEEEEE
Confidence 111111111 0011111 122223455556655 999999999999999999999999999999998874
No 62
>PRK07272 amidophosphoribosyltransferase; Provisional
Probab=99.03 E-value=7.7e-10 Score=114.14 Aligned_cols=108 Identities=24% Similarity=0.277 Sum_probs=82.0
Q ss_pred HHHHHHHHhhcCCCCCeEEEecCCChhHHHHHHHHHcCCCCEEE-EEEeecCC-------------CeeEEEe-eecCCC
Q 018472 244 PVILDYLASKTVSSNDLVVVSPDVGGVARARAFAKKLSDAPLAI-VDKRRHGH-------------NVAEVMN-LIGDVK 308 (355)
Q Consensus 244 ~~La~~L~~~~~~~~~~vVVspd~Ggv~rA~~lA~~L~~~p~~~-v~K~R~~~-------------~~~e~~~-l~gdVk 308 (355)
..++++|.+... .+..+||++...|...|..+|+.++ +|+.. +.|.|... +....+. ....++
T Consensus 272 ~~lg~~La~~~~-~~~D~VvpVPnqa~~lA~~la~~lg-ip~~~~lvk~~~~~rt~~~~~q~~R~~~vr~~f~~~~~~~~ 349 (484)
T PRK07272 272 KRMGKRLAQEFP-HDADIVIGVPNSSLSAASGYAEESG-LPYEMGLVKNQYVARTFIQPTQELREQGVRMKLSAVSGVVK 349 (484)
T ss_pred HHHHHHHHhhcC-CCCCEEEEecHHHHHHHHHHHHHHC-CCcccCeEEEccCCccccCCCHHHHHHHHhhCccccccccC
Confidence 457777776542 2346788888999999999999997 88732 22333110 0011122 245689
Q ss_pred CCEEEEEeCcccchHHHHHHHHHHHHcCCCEEEEEEEcccccCCC
Q 018472 309 GKVAVMVDDMIDTAGTIAKGAALLHQEGAREVYACCTHAVFRLDY 353 (355)
Q Consensus 309 GK~VLIVDDIIdTG~Tl~~aa~~Lk~~GA~~V~v~~tHglfs~~a 353 (355)
||+|+||||+++||.|+.++++.|+++||++|+++++|+.|..+|
T Consensus 350 gk~vllVDDvittG~T~~~~~~~L~~~Ga~~v~~~~~~p~~~~~c 394 (484)
T PRK07272 350 GKRVVMVDDSIVRGTTSRRIVQLLKEAGAKEVHVAIASPELKYPC 394 (484)
T ss_pred CCEEEEEccccCchHHHHHHHHHHHhcCCcEEEEEEeCCccccCh
Confidence 999999999999999999999999999999999999999998876
No 63
>PRK09177 xanthine-guanine phosphoribosyltransferase; Validated
Probab=99.01 E-value=2.2e-09 Score=95.20 Aligned_cols=87 Identities=20% Similarity=0.228 Sum_probs=62.5
Q ss_pred hHHHHHHHHhhcCCCCCeEEEecCCChhHHHHHHHHHcCCCCE-EEEEEeec---CCCeeEEEeeecCCCCCEEEEEeCc
Q 018472 243 QPVILDYLASKTVSSNDLVVVSPDVGGVARARAFAKKLSDAPL-AIVDKRRH---GHNVAEVMNLIGDVKGKVAVMVDDM 318 (355)
Q Consensus 243 ~~~La~~L~~~~~~~~~~vVVspd~Ggv~rA~~lA~~L~~~p~-~~v~K~R~---~~~~~e~~~l~gdVkGK~VLIVDDI 318 (355)
...+++.|.+. .+.++||++.+||+.+|..++..|+ .+. .++.-.+. ..+..+.... -..+||+|||||||
T Consensus 19 i~~la~~I~~~---~~~d~vvgv~~GG~~fa~~L~~~L~-~~~v~~i~~ssY~~~~~~~~~~~~~-~~~~gk~VLIVDDI 93 (156)
T PRK09177 19 ARALAWRLLPA---GQWKGIIAVTRGGLVPAAILARELG-IRLVDTVCISSYDHDNQGELKVLKR-AEGDGEGFLVVDDL 93 (156)
T ss_pred HHHHHHHHHhh---CCCCEEEEEecCCeehHHHHHHHcC-CCceeEEEEEEECCCcCCcEEEecC-CCcCcCEEEEEeee
Confidence 45666666543 2457999999999999999999997 774 23332221 1122222221 14689999999999
Q ss_pred ccchHHHHHHHHHHHH
Q 018472 319 IDTAGTIAKGAALLHQ 334 (355)
Q Consensus 319 IdTG~Tl~~aa~~Lk~ 334 (355)
+|||+|+.++.+.+++
T Consensus 94 iDTG~Tl~~v~~~l~~ 109 (156)
T PRK09177 94 VDTGGTARAVREMYPK 109 (156)
T ss_pred eCCHHHHHHHHHHHhh
Confidence 9999999999999975
No 64
>PRK09246 amidophosphoribosyltransferase; Provisional
Probab=98.98 E-value=3.2e-09 Score=110.22 Aligned_cols=103 Identities=21% Similarity=0.227 Sum_probs=73.1
Q ss_pred HHHHHHHHhhcCCCCCeEEEecCCChhHHHHHHHHHcCCCCEEE-EEEeecC-CC------------eeEEEe-eecCCC
Q 018472 244 PVILDYLASKTVSSNDLVVVSPDVGGVARARAFAKKLSDAPLAI-VDKRRHG-HN------------VAEVMN-LIGDVK 308 (355)
Q Consensus 244 ~~La~~L~~~~~~~~~~vVVspd~Ggv~rA~~lA~~L~~~p~~~-v~K~R~~-~~------------~~e~~~-l~gdVk 308 (355)
..|++++.+.....+..+||++...+...|..+++.++ +|+.. +.|.+.. .. ....+. ....++
T Consensus 279 ~~LA~~l~~~~~~~~~D~VvpVP~s~~~~A~~la~~lg-ip~~~~l~k~~~~~rt~i~~~q~~R~~~vr~~f~~~~~~v~ 357 (501)
T PRK09246 279 EKLAEKIKREWPDLDIDVVIPIPDTSRDAALEIARILG-VPYREGFVKNRYVGRTFIMPGQAQRKKSVRQKLNAIRAEFK 357 (501)
T ss_pred HHHHHHHHHHhcCCCCcEEEEeCccHHHHHHHHHHHHC-CCccceEEEEecccccccCcCHHHHHHHHHhhcCCcccccc
Confidence 45566555443222345778877889999999999997 88742 2232211 00 011122 234689
Q ss_pred CCEEEEEeCcccchHHHHHHHHHHHHcCCCEEEEEEEcc
Q 018472 309 GKVAVMVDDMIDTAGTIAKGAALLHQEGAREVYACCTHA 347 (355)
Q Consensus 309 GK~VLIVDDIIdTG~Tl~~aa~~Lk~~GA~~V~v~~tHg 347 (355)
||+|+||||+++||.|+.++++.|+++||++|++++.=.
T Consensus 358 gK~VlLVDDvitTGaTl~~~~~~L~~aGA~~V~v~v~ap 396 (501)
T PRK09246 358 GKNVLLVDDSIVRGTTSEQIVQMAREAGAKKVYFASAAP 396 (501)
T ss_pred CCeEEEEeccccccHHHHHHHHHHHHcCCCEEEEEEEcc
Confidence 999999999999999999999999999999999998744
No 65
>COG2236 Predicted phosphoribosyltransferases [General function prediction only]
Probab=98.96 E-value=2.7e-09 Score=97.72 Aligned_cols=98 Identities=23% Similarity=0.292 Sum_probs=72.7
Q ss_pred chHHHHHHHHhhcCCCCCeEEEecCCChhHHHHHHHHHcCCCCEEEEEEeecCC-----CeeEE-EeeecC-CCCCEEEE
Q 018472 242 CQPVILDYLASKTVSSNDLVVVSPDVGGVARARAFAKKLSDAPLAIVDKRRHGH-----NVAEV-MNLIGD-VKGKVAVM 314 (355)
Q Consensus 242 a~~~La~~L~~~~~~~~~~vVVspd~Ggv~rA~~lA~~L~~~p~~~v~K~R~~~-----~~~e~-~~l~gd-VkGK~VLI 314 (355)
....||+.|.+. ++++.+||++..||+..|+.++..|+-.++..+.-..... ....+ ..+.-| ++||+|||
T Consensus 15 ~~~~lA~kI~~s--~~~PDvIiaiaRGG~~pariLsd~L~~~~l~~i~v~~y~~~~~~~~~~~v~~~~~~d~l~GkkVLI 92 (192)
T COG2236 15 LCRALAEKIRAS--GFKPDVIVAIARGGLIPARILSDFLGVKPLYSIKVEHYDETAERDGEAKVKYPITIDPLSGKKVLI 92 (192)
T ss_pred HHHHHHHHHHHc--CCCCCEEEEEcCCceehHHHHHHHhCCCceEEEEEEEehhhcccCCcceeecCccccccCCCeEEE
Confidence 456788888765 4678899999999999999999999844666654333211 11122 122335 89999999
Q ss_pred EeCcccchHHHHHHHHHHHHcCCCEEE
Q 018472 315 VDDMIDTAGTIAKGAALLHQEGAREVY 341 (355)
Q Consensus 315 VDDIIdTG~Tl~~aa~~Lk~~GA~~V~ 341 (355)
||||.|||.||..+.+.|++..+..+.
T Consensus 93 VDDI~DTG~Tl~~a~~~l~~~~p~e~r 119 (192)
T COG2236 93 VDDIVDTGETLELALEELKKLAPAEVR 119 (192)
T ss_pred EecccCchHhHHHHHHHHHhhCchhhh
Confidence 999999999999999999995555553
No 66
>PRK07349 amidophosphoribosyltransferase; Provisional
Probab=98.91 E-value=9.8e-09 Score=106.36 Aligned_cols=101 Identities=24% Similarity=0.212 Sum_probs=75.2
Q ss_pred hHHHHHHHHhhcCCCCCeEEEecCCChhHHHHHHHHHcCCCCEEE-EEEeecCC------C------eeE-EE-eeecCC
Q 018472 243 QPVILDYLASKTVSSNDLVVVSPDVGGVARARAFAKKLSDAPLAI-VDKRRHGH------N------VAE-VM-NLIGDV 307 (355)
Q Consensus 243 ~~~La~~L~~~~~~~~~~vVVspd~Ggv~rA~~lA~~L~~~p~~~-v~K~R~~~------~------~~e-~~-~l~gdV 307 (355)
-..++++|.++.. .+..+||++...|+..|..+|+.++ +|+.. +.|.|... . ..+ .+ .+...+
T Consensus 298 R~~~G~~La~~~~-~~~DvVv~VP~sg~~~A~g~A~~lg-ip~~~~L~r~~y~grtfi~p~q~~R~~~~~~kl~~~~~~~ 375 (500)
T PRK07349 298 RQRLGQQLAKESP-VDADLVIGVPDSGIPAAIGFSQASG-IPYAEGLIKNRYVGRTFIQPTQSMRESGIRMKLNPLKDVL 375 (500)
T ss_pred HHHHHHHHhhhcc-cCCcEEEEeccccHHHHHHHHHHHC-CCchhceEEEeccCccccCCCHHHHHhhhheeeecccccc
Confidence 3467777876542 3456889999999999999999997 89852 33433210 0 011 11 233457
Q ss_pred CCCEEEEEeCcccchHHHHHHHHHHHHcCCCEEEEEEE
Q 018472 308 KGKVAVMVDDMIDTAGTIAKGAALLHQEGAREVYACCT 345 (355)
Q Consensus 308 kGK~VLIVDDIIdTG~Tl~~aa~~Lk~~GA~~V~v~~t 345 (355)
+||+|+||||+|+||.|+.++++.|+++||++|++..+
T Consensus 376 ~gkrVlLVDDvIttGtTl~~~~~~Lr~aGAkeV~~~i~ 413 (500)
T PRK07349 376 AGKRIIIVDDSIVRGTTSRKIVKALRDAGATEVHMRIS 413 (500)
T ss_pred CCCEEEEEeceeCCcHHHHHHHHHHHHhCCeEEEEEeC
Confidence 99999999999999999999999999999999998844
No 67
>TIGR01134 purF amidophosphoribosyltransferase. Alternate name: glutamine phosphoribosylpyrophosphate (PRPP) amidotransferase.
Probab=98.90 E-value=1.2e-08 Score=104.40 Aligned_cols=101 Identities=24% Similarity=0.221 Sum_probs=74.1
Q ss_pred hHHHHHHHHhhcCCCCCeEEEecCCChhHHHHHHHHHcCCCCEEE-EEEeecC-C-----C------ee-EEE-eeecCC
Q 018472 243 QPVILDYLASKTVSSNDLVVVSPDVGGVARARAFAKKLSDAPLAI-VDKRRHG-H-----N------VA-EVM-NLIGDV 307 (355)
Q Consensus 243 ~~~La~~L~~~~~~~~~~vVVspd~Ggv~rA~~lA~~L~~~p~~~-v~K~R~~-~-----~------~~-e~~-~l~gdV 307 (355)
...+++.|.++.. .+..+||++...|...|..+|+.++ +|+.. +.|.+.. . . .+ ..+ ...+.+
T Consensus 259 R~~~g~~La~~~~-~~~D~Vv~VP~sg~~~A~~la~~lg-ip~~~~l~r~~~~~r~~i~~~q~~R~~~v~~k~~~~~~~~ 336 (442)
T TIGR01134 259 RKRMGEKLARESP-VEADVVIPVPDSGRSAALGFAQASG-IPYREGLIKNRYVGRTFIMPTQELRELSVRLKLNPIREVF 336 (442)
T ss_pred HHHHHHHHHHhcC-CCCEEEEEccCCHHHHHHHHHHHhC-CCchHHeEEeccccccccCCCHHHHHHHHhhhcccccccC
Confidence 3456677776542 3455777777778999999999997 88753 3343321 0 0 01 111 233568
Q ss_pred CCCEEEEEeCcccchHHHHHHHHHHHHcCCCEEEEEEE
Q 018472 308 KGKVAVMVDDMIDTAGTIAKGAALLHQEGAREVYACCT 345 (355)
Q Consensus 308 kGK~VLIVDDIIdTG~Tl~~aa~~Lk~~GA~~V~v~~t 345 (355)
+||+|+||||+++||.|+.++++.|++.||++|++++.
T Consensus 337 ~gk~v~lvDD~ittG~T~~~~~~~l~~~ga~~v~~~~~ 374 (442)
T TIGR01134 337 RGKRVVLVDDSIVRGTTSRQIVKMLRDAGAKEVHVRIA 374 (442)
T ss_pred CCCEEEEEeccccccHHHHHHHHHHHHcCCcEEEEEEc
Confidence 99999999999999999999999999999999998876
No 68
>COG1926 Predicted phosphoribosyltransferases [General function prediction only]
Probab=98.89 E-value=1.1e-08 Score=94.14 Aligned_cols=105 Identities=27% Similarity=0.388 Sum_probs=80.4
Q ss_pred cccchHHHHHHHHhhcCCCCCeEEEecCCChhHHHHHHHHHcCCCCEEEEEEeecCC--------------C-e------
Q 018472 239 HVYCQPVILDYLASKTVSSNDLVVVSPDVGGVARARAFAKKLSDAPLAIVDKRRHGH--------------N-V------ 297 (355)
Q Consensus 239 ~l~a~~~La~~L~~~~~~~~~~vVVspd~Ggv~rA~~lA~~L~~~p~~~v~K~R~~~--------------~-~------ 297 (355)
.-++...|++.|...- +.++.+|.+...||++.|..+|+.|+ +|++++-.+.-+. + .
T Consensus 7 R~dAGr~La~~l~~~~-~~~~~iVlaLpRGGvpva~evA~~lg-a~ldvliVrKiG~P~n~E~aiGAvae~g~~v~n~~~ 84 (220)
T COG1926 7 RTDAGRKLAQELAALR-DLKDVIVLALPRGGVPVAFEVAQALG-APLDVLIVRKIGAPGNPELAIGAVAEGGDVVLNYDV 84 (220)
T ss_pred HHHHHHHHHHHHHhhc-cCCCcEEEEecCCCchHHHHHHHHhC-CCeeEEEEeecCCCCCchhceeeeccCCcEecchhh
Confidence 3456788999987642 24788999999999999999999997 8987654333110 0 0
Q ss_pred -------------------eEE---------EeeecCCCCCEEEEEeCcccchHHHHHHHHHHHHcCCCEEEEEEE
Q 018472 298 -------------------AEV---------MNLIGDVKGKVAVMVDDMIDTAGTIAKGAALLHQEGAREVYACCT 345 (355)
Q Consensus 298 -------------------~e~---------~~l~gdVkGK~VLIVDDIIdTG~Tl~~aa~~Lk~~GA~~V~v~~t 345 (355)
.|+ .+-.-+++||+||||||-|.||.||..+++.++++|+++|++++.
T Consensus 85 ~~~~~i~~~~i~~~~~~e~~El~rrr~~yr~~~~~~~~~g~~VIlVDDGiATGatm~aAi~~~r~~~~~~IviAVP 160 (220)
T COG1926 85 VRSLGIDDAYIEAAAARERKELLRRREAYRGGRPVPSLKGRTVILVDDGIATGATMKAAVRALRAKGPKEIVIAVP 160 (220)
T ss_pred hhhccCCHHHHHHHHHHHHHHHHHHHHHHcCCCCCCCCCCCEEEEEeCCcchhHHHHHHHHHHHhcCCceEEEEcc
Confidence 000 011236899999999999999999999999999999999998763
No 69
>PRK06781 amidophosphoribosyltransferase; Provisional
Probab=98.87 E-value=1.4e-08 Score=104.75 Aligned_cols=106 Identities=25% Similarity=0.286 Sum_probs=77.4
Q ss_pred HHHHHHHHhhcCCCCCeEEEecCCChhHHHHHHHHHcCCCCEEE-EEEeec-CCC------------eeEEEe-eecCCC
Q 018472 244 PVILDYLASKTVSSNDLVVVSPDVGGVARARAFAKKLSDAPLAI-VDKRRH-GHN------------VAEVMN-LIGDVK 308 (355)
Q Consensus 244 ~~La~~L~~~~~~~~~~vVVspd~Ggv~rA~~lA~~L~~~p~~~-v~K~R~-~~~------------~~e~~~-l~gdVk 308 (355)
..+.+.|.++.. .+..+|+++...|...|..+++.++ +|+.. +.|+|. +.. ....+. +...++
T Consensus 270 ~~~G~~La~~~~-~~~D~vv~VP~s~~~~A~~~a~~~g-ip~~~~lik~~~~~rt~~~~~~~~R~~~v~~~f~~~~~~i~ 347 (471)
T PRK06781 270 KNMGKRLAAEAP-IEADVVTGVPDSSISAAIGYAEATG-IPYELGLIKNRYVGRTFIQPSQELREQGVKMKLSAVRGVVE 347 (471)
T ss_pred HHHHHHHhhhCC-CCCcEEEEcChhHHHHHHHHHHHhC-CCcccceEEEccCCCCCcCCCHHHHHHHHhcceeccccccC
Confidence 456677766542 3455788888899999999999997 88753 333332 110 011233 234589
Q ss_pred CCEEEEEeCcccchHHHHHHHHHHHHcCCCEEEEEEEcccccC
Q 018472 309 GKVAVMVDDMIDTAGTIAKGAALLHQEGAREVYACCTHAVFRL 351 (355)
Q Consensus 309 GK~VLIVDDIIdTG~Tl~~aa~~Lk~~GA~~V~v~~tHglfs~ 351 (355)
||+|+||||+++||.|+.+++++|+++||++|+++.+=+-+..
T Consensus 348 gk~VlLVDDvittGtTl~~~~~~Lk~aGA~eV~v~i~sPpi~~ 390 (471)
T PRK06781 348 GKRVVMIDDSIVRGTTSKRIVRMLREAGATEVHVRIASPPLKY 390 (471)
T ss_pred CceEEEEeceeccchHHHHHHHHHHHcCCcEEEEEECCCCccC
Confidence 9999999999999999999999999999999999987664433
No 70
>KOG3367 consensus Hypoxanthine-guanine phosphoribosyltransferase [Nucleotide transport and metabolism]
Probab=98.86 E-value=8.5e-09 Score=92.11 Aligned_cols=101 Identities=12% Similarity=0.229 Sum_probs=74.8
Q ss_pred hHHHHHHHHhhcCCCCCeEEEecCCChhHHHHHHHHHcCC------CC--EEEEEEeecC----CCeeEEE--eeecCCC
Q 018472 243 QPVILDYLASKTVSSNDLVVVSPDVGGVARARAFAKKLSD------AP--LAIVDKRRHG----HNVAEVM--NLIGDVK 308 (355)
Q Consensus 243 ~~~La~~L~~~~~~~~~~vVVspd~Ggv~rA~~lA~~L~~------~p--~~~v~K~R~~----~~~~e~~--~l~gdVk 308 (355)
...||+-+.+.. .+++.++++..+||.++-.++.++|.+ .| +++++.+... .+.++++ ....+++
T Consensus 46 ~~rlakDi~~~~-g~~~i~~lcVlkG~ykF~adLve~l~n~~s~~~~pmtvDFIR~kSY~n~~stg~iqiig~d~l~~lt 124 (216)
T KOG3367|consen 46 VERLAKDIMKEI-GNKPIIFLCVLKGGYKFFADLVERLKNRNSDRPLPMTVDFIRAKSYCNDQSTGDIQIIGGDDLSTLT 124 (216)
T ss_pred HHHhhhhhhhcc-CCCceEEEEEecchhHHHHHHHHHHhhcccCCCcceeeeeeehhhhcCCcccCCceeecCCCHHHhc
Confidence 455666666554 567889999999999999999998753 23 3455433221 1222332 2223589
Q ss_pred CCEEEEEeCcccchHHHHHHHHHHHHcCCCEEEEEE
Q 018472 309 GKVAVMVDDMIDTAGTIAKGAALLHQEGAREVYACC 344 (355)
Q Consensus 309 GK~VLIVDDIIdTG~Tl~~aa~~Lk~~GA~~V~v~~ 344 (355)
||+|+|||||+|||.||....+.+++.+++.|+++.
T Consensus 125 gK~VliVeDIvdTGrTl~~Lls~~~~~k~~~v~vas 160 (216)
T KOG3367|consen 125 GKNVLIVEDIVDTGRTLSTLLSHMKAYKPSMVKVAS 160 (216)
T ss_pred CCcEEEEEeeccccchHHHHHHHHHhcCccceeeee
Confidence 999999999999999999999999999999998875
No 71
>PRK07631 amidophosphoribosyltransferase; Provisional
Probab=98.82 E-value=2.1e-08 Score=103.34 Aligned_cols=105 Identities=25% Similarity=0.239 Sum_probs=76.3
Q ss_pred HHHHHHHHhhcCCCCCeEEEecCCChhHHHHHHHHHcCCCCEEE-EEEeecCC-C------------eeEEEe-eecCCC
Q 018472 244 PVILDYLASKTVSSNDLVVVSPDVGGVARARAFAKKLSDAPLAI-VDKRRHGH-N------------VAEVMN-LIGDVK 308 (355)
Q Consensus 244 ~~La~~L~~~~~~~~~~vVVspd~Ggv~rA~~lA~~L~~~p~~~-v~K~R~~~-~------------~~e~~~-l~gdVk 308 (355)
..+.+.|.++.. .+..+||++...|...|..+++.++ +|+.. +.|.|... . ....+. ..+.++
T Consensus 270 ~~~G~~La~~~~-~~~D~VvpVP~s~~~~A~gla~~~g-ip~~~~lik~~~~~Rt~i~~~~~~R~~nv~~~f~~~~~~v~ 347 (475)
T PRK07631 270 KNLGKRLALEAP-VEADVVTGVPDSSISAAIGYAEATG-IPYELGLIKNRYVGRTFIQPSQALREQGVKMKLSPVRGVVE 347 (475)
T ss_pred HHHHHHHHhhCC-CCCcEEEEechhHHHHHHHHHHHHC-CCcccceEEEecCCCCCcCCCHHHHHHHHhhhhhhcccccC
Confidence 456677766542 3456788877789999999999997 88743 33433211 0 001122 234589
Q ss_pred CCEEEEEeCcccchHHHHHHHHHHHHcCCCEEEEEEEccccc
Q 018472 309 GKVAVMVDDMIDTAGTIAKGAALLHQEGAREVYACCTHAVFR 350 (355)
Q Consensus 309 GK~VLIVDDIIdTG~Tl~~aa~~Lk~~GA~~V~v~~tHglfs 350 (355)
||+|+||||+++||.|+.++++.|+++||++|++..+=+-+-
T Consensus 348 gk~VlLVDDsittGtTl~~~~~~L~~aGA~eV~v~~~sPpi~ 389 (475)
T PRK07631 348 GKRVVMVDDSIVRGTTSRRIVTMLREAGATEVHVRISSPPIT 389 (475)
T ss_pred CceEEEEeeeeccHHHHHHHHHHHHHcCCCEEEEEEeCCCcc
Confidence 999999999999999999999999999999999988765443
No 72
>PRK06388 amidophosphoribosyltransferase; Provisional
Probab=98.76 E-value=7.7e-08 Score=99.23 Aligned_cols=114 Identities=24% Similarity=0.249 Sum_probs=76.9
Q ss_pred ccCCccccccc------hHHHHHHHHhhcCCCCCeEEEecCCChhHHHHHHHHHcCCCCEEE-EEEeecCCC--------
Q 018472 232 YFDIPVDHVYC------QPVILDYLASKTVSSNDLVVVSPDVGGVARARAFAKKLSDAPLAI-VDKRRHGHN-------- 296 (355)
Q Consensus 232 ~F~ip~~~l~a------~~~La~~L~~~~~~~~~~vVVspd~Ggv~rA~~lA~~L~~~p~~~-v~K~R~~~~-------- 296 (355)
||..|-..+.. -..+.+.|.+... .+..+||++..-+...|..+++.++ +|+.. +.|.|....
T Consensus 260 Yfarpds~~~g~~vy~~R~~~G~~La~~~~-~~~D~VvpVP~s~~~~A~g~a~~~g-ip~~~~L~r~r~~~r~fi~~~q~ 337 (474)
T PRK06388 260 YFSRPDSIIDGINVYQARVRMGMRLAKESP-VEADVVVPVPDSGRSQAIGFSMASG-IPYTEGLIKNRYSERTFIMPTQS 337 (474)
T ss_pred eecCCccccCCcHHHHHHHHHHHHHHhhcc-CCCcEEEeeCCCcHHHHHHHHHHhC-CCchhheEEecccCCcccCCchh
Confidence 56655443332 2346666665542 2344666666666788999999997 88743 344442210
Q ss_pred ----eeEE-Ee-eecCCCCCEEEEEeCcccchHHHHHHHHHHHHcCCCEEEEEEEcc
Q 018472 297 ----VAEV-MN-LIGDVKGKVAVMVDDMIDTAGTIAKGAALLHQEGAREVYACCTHA 347 (355)
Q Consensus 297 ----~~e~-~~-l~gdVkGK~VLIVDDIIdTG~Tl~~aa~~Lk~~GA~~V~v~~tHg 347 (355)
..+. ++ +...++||+||||||+++||.|+.+++++|+++||++|++..+=+
T Consensus 338 ~R~~~~~~kl~~~~~~i~gk~VlLVDDsittGtTl~~~~~~L~~aGak~V~~ri~sP 394 (474)
T PRK06388 338 DRKAAIKLKLNPIREVISGKRIVLVDDSIVRGNTMRFIVKIMRKYGAKEVHVRIGSP 394 (474)
T ss_pred hhhhceeEEeccccccccCceEEEEeCeECcHHHHHHHHHHHHHcCCCEEEEEeCCC
Confidence 0111 11 223578999999999999999999999999999999999887655
No 73
>KOG1712 consensus Adenine phosphoribosyl transferases [Nucleotide transport and metabolism]
Probab=98.70 E-value=6.4e-08 Score=85.74 Aligned_cols=103 Identities=25% Similarity=0.333 Sum_probs=78.4
Q ss_pred hHHHHHHHHhhcCCCCCeEEEecCCChhHHHHHHHHHcCCCCEEEEEEeecCCC-ee------E----EEee-ecCCC-C
Q 018472 243 QPVILDYLASKTVSSNDLVVVSPDVGGVARARAFAKKLSDAPLAIVDKRRHGHN-VA------E----VMNL-IGDVK-G 309 (355)
Q Consensus 243 ~~~La~~L~~~~~~~~~~vVVspd~Ggv~rA~~lA~~L~~~p~~~v~K~R~~~~-~~------e----~~~l-~gdVk-G 309 (355)
...+++++++.. +.+-.+|++.+..|+-+.-.+|-.++ +.++-++|..+-.+ .+ | .+++ .+.++ |
T Consensus 45 idlf~~h~~~~~-~~~Id~iaGlEaRGFLFGP~iAlalG-~~fVPiRK~gKLPG~~i~~~Y~lEYg~d~~Emq~~Ai~~g 122 (183)
T KOG1712|consen 45 IDLFVDHYRETF-EMKIDVIAGLEARGFLFGPSIALALG-AGFVPIRKPGKLPGEVISESYELEYGEDRFEMQKGAIKPG 122 (183)
T ss_pred HHHHHHHHHHHh-cCcceEEEeeeecceecCcHHHHHhC-CCeeecccCCCCCCceeEEEEeeecCccceeeeccccCCC
Confidence 345666666643 34567999999999999999999997 89888887654211 11 0 0111 23454 8
Q ss_pred CEEEEEeCcccchHHHHHHHHHHHHcCCCEEEEEEEcc
Q 018472 310 KVAVMVDDMIDTAGTIAKGAALLHQEGAREVYACCTHA 347 (355)
Q Consensus 310 K~VLIVDDIIdTG~Tl~~aa~~Lk~~GA~~V~v~~tHg 347 (355)
.+|+||||++.||||+.+|.++|.+.||.-|-+.|.-.
T Consensus 123 ~rvvvVDDllATGGTl~AA~~Ll~r~ga~vvE~~~vie 160 (183)
T KOG1712|consen 123 QRVVVVDDLLATGGTLAAATELLERVGAEVVECACVIE 160 (183)
T ss_pred CeEEEEechhhcCccHHHHHHHHHHhccEEEEEEEEEE
Confidence 99999999999999999999999999999998888644
No 74
>PRK07847 amidophosphoribosyltransferase; Provisional
Probab=98.66 E-value=1.4e-07 Score=98.04 Aligned_cols=104 Identities=23% Similarity=0.214 Sum_probs=72.8
Q ss_pred HHHHHHHHhhcCCCCCeEEEecCCChhHHHHHHHHHcCCCCEEE-EEEeecC-------C----C-eeEE-Ee-eecCCC
Q 018472 244 PVILDYLASKTVSSNDLVVVSPDVGGVARARAFAKKLSDAPLAI-VDKRRHG-------H----N-VAEV-MN-LIGDVK 308 (355)
Q Consensus 244 ~~La~~L~~~~~~~~~~vVVspd~Ggv~rA~~lA~~L~~~p~~~-v~K~R~~-------~----~-~~e~-~~-l~gdVk 308 (355)
..+.+.|.++.. .+..+||++...|...|..+|+.++ +|+.. +.|.|.. . + .... .+ +...++
T Consensus 289 ~~~G~~La~~~~-~~~D~VvpVP~sG~~~A~g~a~~~g-ip~~~~l~kn~~~grtfi~~~q~~r~~~~r~k~~~~~~~~~ 366 (510)
T PRK07847 289 VEIGRRLAREHP-VEADLVIPVPESGTPAAVGYAQESG-IPFGQGLVKNAYVGRTFIQPSQTIRQLGIRLKLNPLREVIR 366 (510)
T ss_pred HHHHHHHHhhCC-CCCeEEEeccCchHHHHHHHHHHhC-CChhhceEeecccccCccCcchhhhhhceeeecCccccccC
Confidence 456677766542 3445677755557999999999997 88743 3343211 0 0 1111 11 122479
Q ss_pred CCEEEEEeCcccchHHHHHHHHHHHHcCCCEEEEEEEcccc
Q 018472 309 GKVAVMVDDMIDTAGTIAKGAALLHQEGAREVYACCTHAVF 349 (355)
Q Consensus 309 GK~VLIVDDIIdTG~Tl~~aa~~Lk~~GA~~V~v~~tHglf 349 (355)
||+||||||+|+||.|+.++++.|+++||++|++..+-+-+
T Consensus 367 gk~vllVDD~ittG~T~~~~~~~L~~~ga~~v~~ri~sPpi 407 (510)
T PRK07847 367 GKRLVVVDDSIVRGNTQRALVRMLREAGAAEVHVRISSPPV 407 (510)
T ss_pred CCEEEEEecccCchHHHHHHHHHHHHcCCCEEEEEECCCCc
Confidence 99999999999999999999999999999999988765533
No 75
>TIGR01251 ribP_PPkin ribose-phosphate pyrophosphokinase. In some systems, close homologs lacking enzymatic activity exist and perform regulatory functions. The model is designated subfamily rather than equivalog for this reason.
Probab=98.66 E-value=1.1e-06 Score=85.94 Aligned_cols=136 Identities=18% Similarity=0.225 Sum_probs=104.3
Q ss_pred CEEEEECCCCHHHHHHHHHHhCCceeceeeeec-CCCceEEE-eccCcCCCcEEEEccCCCCchhHHHHHHHHHHHHHhc
Q 018472 98 RIKLFSGTANPALSQEIACYMGVELGKINIKRF-ADGEIYVQ-LQESVRGCDVYLVQPTCPPANENLMELLIMIDACRRA 175 (355)
Q Consensus 98 ~~~ifsg~~~~~LA~~Ia~~Lg~~l~~~~~~~F-pDGE~~v~-i~~~VrG~dV~iiqs~~~p~nd~lmELll~idalr~~ 175 (355)
.+.+=.......+|..+|+.||.++..++..++ ++||..+. +.++++|++|+||..+....+ .++..++++++.
T Consensus 161 ~viv~pd~g~~~~A~~lA~~Lg~~~~~i~k~r~~~~~~~~~~~~~~~v~g~~vliVDDii~tG~----Tl~~a~~~l~~~ 236 (308)
T TIGR01251 161 PVVVSPDAGGVERAKKVADALGCPLAIIDKRRISATNEVEVMNLVGDVEGKDVVIVDDIIDTGG----TIAKAAEILKSA 236 (308)
T ss_pred CEEEEECCchHHHHHHHHHHhCCCEEEEEEEecCCCCEEEEEecccccCCCEEEEEccccCCHH----HHHHHHHHHHhc
Confidence 344444566779999999999999999999999 88886654 457899999999999876533 567888999999
Q ss_pred CCCeEEEEeeCccccccccccCCCCcchHHHHHHHHHHhCCCEEEEccCCchhhhcccCCccccccchHHHHHHHHhhc
Q 018472 176 SAKNITAVIPYFGYARADRKTQGRESIAAKLVANLITEAGADRVLACDLHSGQSMGYFDIPVDHVYCQPVILDYLASKT 254 (355)
Q Consensus 176 ~a~~ItlViPY~~YaRqDr~~~~ge~isak~vA~lL~~~G~d~VitvDlHs~~~~~~F~ip~~~l~a~~~La~~L~~~~ 254 (355)
|+++|.++.++- ...++. +.++. +.|+|+|++.|.|... .+|+ +...++..+.|++.|....
T Consensus 237 ga~~v~~~~th~--------v~~~~a-----~~~l~-~~~~~~iv~tdt~~~~--~~~~-~~~~v~va~~la~~i~~~~ 298 (308)
T TIGR01251 237 GAKRVIAAATHG--------VFSGPA-----IERIA-NAGVEEVIVTNTIPHE--KHKP-KVSVISVAPLIAEAIRRIH 298 (308)
T ss_pred CCCEEEEEEEee--------ecCcHH-----HHHHH-hCCCCEEEEeCCCCcc--ccCC-CcEEEEhHHHHHHHHHHHh
Confidence 999999999831 112222 34444 5689999999999764 3554 5778888999999997653
No 76
>COG2065 PyrR Pyrimidine operon attenuation protein/uracil phosphoribosyltransferase [Nucleotide transport and metabolism]
Probab=98.61 E-value=3e-07 Score=81.80 Aligned_cols=102 Identities=24% Similarity=0.311 Sum_probs=76.5
Q ss_pred hHHHHHHHHhhcCCCCCeEEEecCCChhHHHHHHHHHcC-----CCCEEEEE--EeecCCC-------eeEEEeeecCCC
Q 018472 243 QPVILDYLASKTVSSNDLVVVSPDVGGVARARAFAKKLS-----DAPLAIVD--KRRHGHN-------VAEVMNLIGDVK 308 (355)
Q Consensus 243 ~~~La~~L~~~~~~~~~~vVVspd~Ggv~rA~~lA~~L~-----~~p~~~v~--K~R~~~~-------~~e~~~l~gdVk 308 (355)
..-++.+|.++....++++++++-.+|++.|..++++++ .+|+..++ -.|+.-. ......+..++.
T Consensus 16 itRia~eIiErnk~~~~~vlvGIktrGv~lA~rl~~~i~~~Eg~~vp~g~lDIt~yRDDl~~~~~~~p~~~~t~~~~di~ 95 (179)
T COG2065 16 ITRIAHEIIERNKGLDNLVLVGIKTRGVPLAERLAERIEELEGIEVPVGELDITLYRDDLTQKGPLRPQAKTTILPFDIT 95 (179)
T ss_pred HHHHHHHHHHHhCCCCceEEEeEecCCHHHHHHHHHHHHHHhCCCCCeeeEEeEEeechhhhcCccCCcccCccCccccc
Confidence 455777777776567899999999999999999999875 24555544 2443211 111124456899
Q ss_pred CCEEEEEeCcccchHHHHHHHHHHHHcCC-CEEEEEE
Q 018472 309 GKVAVMVDDMIDTAGTIAKGAALLHQEGA-REVYACC 344 (355)
Q Consensus 309 GK~VLIVDDIIdTG~Tl~~aa~~Lk~~GA-~~V~v~~ 344 (355)
||+||+|||++-||.|+.+|.++|.+.|- .+|..+|
T Consensus 96 ~k~VILVDDVLytGRTIRAAldal~d~GRPa~I~Lav 132 (179)
T COG2065 96 GKRVILVDDVLYTGRTIRAALDALVDYGRPAKIQLAV 132 (179)
T ss_pred CCEEEEEeeecccCccHHHHHHHHHhcCCcceEEEEE
Confidence 99999999999999999999999999885 4666655
No 77
>PF14681 UPRTase: Uracil phosphoribosyltransferase; PDB: 1V9S_B 1UPF_A 1UPU_D 1JLR_B 1BD4_A 1BD3_C 1JLS_D 1XTV_C 1XTU_H 3G6W_C ....
Probab=98.39 E-value=3.3e-06 Score=78.16 Aligned_cols=89 Identities=16% Similarity=0.312 Sum_probs=72.6
Q ss_pred CCeEEEecCCChhHHHHHHHHHcCCCCEEEEEEeecCCC-eeE--EEeeecCCCCCEEEEEeCcccchHHHHHHHHHHHH
Q 018472 258 NDLVVVSPDVGGVARARAFAKKLSDAPLAIVDKRRHGHN-VAE--VMNLIGDVKGKVAVMVDDMIDTAGTIAKGAALLHQ 334 (355)
Q Consensus 258 ~~~vVVspd~Ggv~rA~~lA~~L~~~p~~~v~K~R~~~~-~~e--~~~l~gdVkGK~VLIVDDIIdTG~Tl~~aa~~Lk~ 334 (355)
++.++|++..+|..+...+.+.+.++++..+.-+|+..+ ..+ ..++..++++++|||+|-|++||+|+.++++.|++
T Consensus 67 ~~i~~V~IlRaG~~m~~~~~~~~p~a~~g~i~i~r~~~t~~p~~~y~~LP~~i~~~~VillDpmlaTG~s~~~ai~~L~~ 146 (207)
T PF14681_consen 67 DKICIVPILRAGLPMLEGFREVFPDARVGHIGIQRDEETLEPVLYYNKLPEDIENRKVILLDPMLATGGSAIAAIEILKE 146 (207)
T ss_dssp GCEEEEEETTTHHHHHHHHHHHSTTSEEEEEEEEEETTTSSEEEEEEE--TTGTTSEEEEEESEESSSHHHHHHHHHHHH
T ss_pred ccEEEEEEeCCcHHHHHHHHHhCCCcceEEEEEEEcCCccceeeeHhhCCCCccCCEEEEEeccccchhhHHHHHHHHHH
Confidence 478999999999999999999998888888877776433 122 23577789999999999999999999999999999
Q ss_pred cCC--CEEEEEEEc
Q 018472 335 EGA--REVYACCTH 346 (355)
Q Consensus 335 ~GA--~~V~v~~tH 346 (355)
+|+ ++|.+++.-
T Consensus 147 ~G~~~~~I~~v~~i 160 (207)
T PF14681_consen 147 HGVPEENIIIVSVI 160 (207)
T ss_dssp TTG-GGEEEEEEEE
T ss_pred cCCCcceEEEEEEE
Confidence 987 577776653
No 78
>PLN02541 uracil phosphoribosyltransferase
Probab=98.35 E-value=3.1e-06 Score=80.47 Aligned_cols=88 Identities=20% Similarity=0.252 Sum_probs=68.6
Q ss_pred CCeEEEecCCChhHHHHHHHHHcCCCCEEEEEEeecCCCe-eE-E-EeeecCCC-CCEEEEEeCcccchHHHHHHHHHHH
Q 018472 258 NDLVVVSPDVGGVARARAFAKKLSDAPLAIVDKRRHGHNV-AE-V-MNLIGDVK-GKVAVMVDDMIDTAGTIAKGAALLH 333 (355)
Q Consensus 258 ~~~vVVspd~Ggv~rA~~lA~~L~~~p~~~v~K~R~~~~~-~e-~-~~l~gdVk-GK~VLIVDDIIdTG~Tl~~aa~~Lk 333 (355)
+++++|++...|..+...+.+.+.++....+.-+|+..+. .+ . ..+..++. +++|||+|||+.||+|+..+++.|+
T Consensus 102 ~~i~~V~ILRAGl~m~~g~~~~~P~a~vg~i~~~rd~~t~e~~~yy~kLP~~i~~~~~VlllDpmLATGgS~~~ai~~L~ 181 (244)
T PLN02541 102 EPVAVVPILRAGLVLLEHASSVLPATKTYHLGFVRDEETLQPSMYLNKLPDKFPEGSRVLVVDPMLATGGTIVAAIDELV 181 (244)
T ss_pred CcEEEEeEeCCcHhHHHHHHhhCCCCeeEEEEEEEcccccceEEeeccCchhcCCCCEEEEECcchhhhHHHHHHHHHHH
Confidence 3489999999999999999888876777777767764321 11 1 24455675 6899999999999999999999999
Q ss_pred HcCCC--EEEEEEE
Q 018472 334 QEGAR--EVYACCT 345 (355)
Q Consensus 334 ~~GA~--~V~v~~t 345 (355)
++|+. +|.+++.
T Consensus 182 ~~Gv~~~~I~~v~~ 195 (244)
T PLN02541 182 SRGASVEQIRVVCA 195 (244)
T ss_pred HcCCCcccEEEEEE
Confidence 99997 6666553
No 79
>COG0035 Upp Uracil phosphoribosyltransferase [Nucleotide transport and metabolism]
Probab=98.34 E-value=2.7e-06 Score=78.73 Aligned_cols=89 Identities=17% Similarity=0.306 Sum_probs=74.1
Q ss_pred CCCeEEEecCCChhHHHHHHHHHcCCCCEEEEEEeecCCCe-e-EE-EeeecCCCCCEEEEEeCcccchHHHHHHHHHHH
Q 018472 257 SNDLVVVSPDVGGVARARAFAKKLSDAPLAIVDKRRHGHNV-A-EV-MNLIGDVKGKVAVMVDDMIDTAGTIAKGAALLH 333 (355)
Q Consensus 257 ~~~~vVVspd~Ggv~rA~~lA~~L~~~p~~~v~K~R~~~~~-~-e~-~~l~gdVkGK~VLIVDDIIdTG~Tl~~aa~~Lk 333 (355)
.++.++|++...|..+...+.+.+..+.+..+.-+|+.+.. . +. ..+..++++++|+|+|-|+.||+|+..|++.|+
T Consensus 69 ~~~i~~V~ILRAGl~m~~gl~~~~P~a~vG~ig~~Rdeet~~p~~yy~KLP~~~~~~~viv~DPMLATG~s~i~ai~~L~ 148 (210)
T COG0035 69 GKKIVIVPILRAGLGMVEGLLKLIPSARVGHIGIYRDEETLEPVLYYEKLPEDIDERTVIVLDPMLATGGSAIAAIDLLK 148 (210)
T ss_pred CCcEEEEEEeeccccHHHHHHHhCCcceEEEEEEEecCccCceehhHHhCCCcccCCeEEEECchhhccHhHHHHHHHHH
Confidence 34589999999999999999999887788888888875432 1 11 145558999999999999999999999999999
Q ss_pred Hc-CCCEEEEEEE
Q 018472 334 QE-GAREVYACCT 345 (355)
Q Consensus 334 ~~-GA~~V~v~~t 345 (355)
++ |+++|.++|.
T Consensus 149 ~~G~~~~I~~v~~ 161 (210)
T COG0035 149 KRGGPKNIKVVSL 161 (210)
T ss_pred HhCCCceEEEEEE
Confidence 99 8999887764
No 80
>COG0034 PurF Glutamine phosphoribosylpyrophosphate amidotransferase [Nucleotide transport and metabolism]
Probab=98.13 E-value=7.6e-06 Score=83.13 Aligned_cols=103 Identities=24% Similarity=0.230 Sum_probs=76.3
Q ss_pred hHHHHHHHHhhcCCCCCeEEEecCCChhHHHHHHHHHcCCCCEEE-EEEeecCCCe------------eE-EE-eeecCC
Q 018472 243 QPVILDYLASKTVSSNDLVVVSPDVGGVARARAFAKKLSDAPLAI-VDKRRHGHNV------------AE-VM-NLIGDV 307 (355)
Q Consensus 243 ~~~La~~L~~~~~~~~~~vVVspd~Ggv~rA~~lA~~L~~~p~~~-v~K~R~~~~~------------~e-~~-~l~gdV 307 (355)
-..+.+.|.++.+ .+-++|+++...|...|-.+|+.++ +|+.. +-|.|....+ +. .+ .+...+
T Consensus 269 R~~mG~~La~e~~-~eaDvVipVPDSg~~aAig~A~~sG-iPy~~GliKNrYvgRTFI~P~q~~R~~~Vr~KLnpvr~~v 346 (470)
T COG0034 269 RKRMGEKLAEEIP-VEADVVIPVPDSGRPAAIGYARASG-IPYEEGLIKNRYVGRTFIMPTQELREKGVRLKLNPVREVV 346 (470)
T ss_pred HHHHHHHHHHhCC-ccccEEEecCCCChHHHHHHHHHhC-CchhhccccccccceeeeCCcHHHHHhhhhhhcCchHHHh
Confidence 3456667766542 3446899999999999999999997 88743 3355432110 00 11 233458
Q ss_pred CCCEEEEEeCcccchHHHHHHHHHHHHcCCCEEEEEEEcc
Q 018472 308 KGKVAVMVDDMIDTAGTIAKGAALLHQEGAREVYACCTHA 347 (355)
Q Consensus 308 kGK~VLIVDDIIdTG~Tl~~aa~~Lk~~GA~~V~v~~tHg 347 (355)
+||+|+||||-|=.|.|..+.+++|+++||++|++...-+
T Consensus 347 ~GKrVvlVDDSIVRGTTsr~IV~mlReAGAkEVHvriasP 386 (470)
T COG0034 347 KGKRVVLVDDSIVRGTTSRRIVQMLREAGAKEVHVRIASP 386 (470)
T ss_pred CCCeEEEEccccccCccHHHHHHHHHHhCCCEEEEEecCC
Confidence 9999999999999999999999999999999999876543
No 81
>KOG0572 consensus Glutamine phosphoribosylpyrophosphate amidotransferase [Nucleotide transport and metabolism]
Probab=97.45 E-value=0.00019 Score=71.62 Aligned_cols=156 Identities=22% Similarity=0.229 Sum_probs=94.9
Q ss_pred EEEeeCccccccccccCCCCcchHHHHHHHHHHhCCCEEEEccCCc--hhhh-----cccCCccccccch------HHHH
Q 018472 181 TAVIPYFGYARADRKTQGRESIAAKLVANLITEAGADRVLACDLHS--GQSM-----GYFDIPVDHVYCQ------PVIL 247 (355)
Q Consensus 181 tlViPY~~YaRqDr~~~~ge~isak~vA~lL~~~G~d~VitvDlHs--~~~~-----~~F~ip~~~l~a~------~~La 247 (355)
+.+++-++ +|-+|..+|||.+-. ...|.+.+-.+.--. +..+ .||..|-..+... ....
T Consensus 210 Sc~f~~i~-a~y~Rev~PGEiV~i-------~r~g~~s~~~~~~~~~~~~~~cIFEyvYFArpdSi~eG~sVY~~R~~~G 281 (474)
T KOG0572|consen 210 SCAFLSIG-ARYEREVRPGEIVEI-------SRNGVKSVDIMKRPDENRMAFCIFEYVYFARPDSIFEGQSVYTVRLQCG 281 (474)
T ss_pred ceeeeecc-cEEEEeecCceEEEE-------ecCCceeeeeecCCccccccceeeeEEEeccCCceecccchHHHHHHHH
Confidence 34556565 377777778887743 233433333332111 1111 3565443333322 2233
Q ss_pred HHHHhhcCCCCCeEEEecCCChhHHHHHHHHHcCCCCEEE-EEEeecCCCe--------------eEEEeeecCCCCCEE
Q 018472 248 DYLASKTVSSNDLVVVSPDVGGVARARAFAKKLSDAPLAI-VDKRRHGHNV--------------AEVMNLIGDVKGKVA 312 (355)
Q Consensus 248 ~~L~~~~~~~~~~vVVspd~Ggv~rA~~lA~~L~~~p~~~-v~K~R~~~~~--------------~e~~~l~gdVkGK~V 312 (355)
+.|...- ..+-++|++....|..-|-.+|.+.+ +|+.. +.|.|.-... .+.-.+...++||+|
T Consensus 282 ~~LA~e~-P~d~DvVi~VPdS~~~aAlgyA~~sG-~py~e~l~rnrYvGRTFI~P~q~iR~~~V~~Kl~~l~~~~~GKrv 359 (474)
T KOG0572|consen 282 EQLATEA-PVDADVVIPVPDSGTTAALGYAAKSG-LPYQEVLIRNRYVGRTFIEPNQRIRQLGVKKKLGPLRQNFEGKRV 359 (474)
T ss_pred hHhhhcC-CcccceEEecCCchhHHHHHHHHHhC-CchhhhhhhcccccceecCccHHHHHhhhhhhcccchhhcCCceE
Confidence 3443322 23445777777777888999999987 88843 3344431100 011134557899999
Q ss_pred EEEeCcccchHHHHHHHHHHHHcCCCEEEEEEEc
Q 018472 313 VMVDDMIDTAGTIAKGAALLHQEGAREVYACCTH 346 (355)
Q Consensus 313 LIVDDIIdTG~Tl~~aa~~Lk~~GA~~V~v~~tH 346 (355)
+||||-|--|.|+...+++|+++||++|+....-
T Consensus 360 vlVDDSIVRGtTs~~IVkmlreaGAkeVh~riAs 393 (474)
T KOG0572|consen 360 VLVDDSIVRGTTSSPIVKMLREAGAKEVHIRIAS 393 (474)
T ss_pred EEEecceeccCchHHHHHHHHHcCCcEEEEEecC
Confidence 9999999999999999999999999999986543
No 82
>PRK00934 ribose-phosphate pyrophosphokinase; Provisional
Probab=97.18 E-value=0.014 Score=56.71 Aligned_cols=125 Identities=20% Similarity=0.274 Sum_probs=87.9
Q ss_pred EEEEECCCCHHHHHHHHHHhCCceeceeeeecCCCceEEEe-ccCcCCCcEEEEccCCCCchhHHHHHHHHHHHHHhcCC
Q 018472 99 IKLFSGTANPALSQEIACYMGVELGKINIKRFADGEIYVQL-QESVRGCDVYLVQPTCPPANENLMELLIMIDACRRASA 177 (355)
Q Consensus 99 ~~ifsg~~~~~LA~~Ia~~Lg~~l~~~~~~~FpDGE~~v~i-~~~VrG~dV~iiqs~~~p~nd~lmELll~idalr~~~a 177 (355)
+.+-.......+|..+|+.||+++..+.-.+...++..+.. ..++.|++|+||....... .. +.-.+++||+.||
T Consensus 157 vvv~pd~Ga~~~a~~lA~~l~~~~~~i~k~r~~~~~~~~~~~~~~v~Gk~VlIVDDIi~TG-~T---l~~aa~~Lk~~GA 232 (285)
T PRK00934 157 LVLAPDKGALELAKEAAEILGCEYDYLEKTRISPTEVEIAPKNLDVKGKDVLIVDDIISTG-GT---MATAIKILKEQGA 232 (285)
T ss_pred EEEEeCCchHHHHHHHHHHhCCCEEEEEEEecCCCeEEEeccccccCCCEEEEEcCccccH-HH---HHHHHHHHHHCCC
Confidence 54444566789999999999999887776666666655542 3468999999998776432 22 3566788999999
Q ss_pred CeEEEEee--CccccccccccCCCCcchHHHHHHHHHHhCCCEEEEccCCchhhhcccCCccccccchHHHHHHHH
Q 018472 178 KNITAVIP--YFGYARADRKTQGRESIAAKLVANLITEAGADRVLACDLHSGQSMGYFDIPVDHVYCQPVILDYLA 251 (355)
Q Consensus 178 ~~ItlViP--Y~~YaRqDr~~~~ge~isak~vA~lL~~~G~d~VitvDlHs~~~~~~F~ip~~~l~a~~~La~~L~ 251 (355)
++|.++.- .|.= ..+ +-|...|+++|++.|-+. .+...++-.++|++.|+
T Consensus 233 ~~V~~~~~H~i~~~---------------~a~-~~l~~~~i~~i~~tnti~--------~~~~~~~va~~la~~i~ 284 (285)
T PRK00934 233 KKVYVACVHPVLVG---------------DAI-LKLYNAGVDEIIVTDTLE--------SEVSKISVAPLIADLLK 284 (285)
T ss_pred CEEEEEEEeeccCc---------------HHH-HHHHhCCCCEEEEcCCCC--------CCceEEEcHHHHHHHHh
Confidence 99998774 3321 111 224457899999999763 12345677888988874
No 83
>PRK07199 phosphoribosylpyrophosphate synthetase; Provisional
Probab=97.16 E-value=0.018 Score=56.38 Aligned_cols=130 Identities=17% Similarity=0.210 Sum_probs=91.2
Q ss_pred CEEEEECCCCHHHHHHHHHHhCCceeceeeeecCCCceEEEe--ccCcCCCcEEEEccCCCCchhHHHHHHHHHHHHHhc
Q 018472 98 RIKLFSGTANPALSQEIACYMGVELGKINIKRFADGEIYVQL--QESVRGCDVYLVQPTCPPANENLMELLIMIDACRRA 175 (355)
Q Consensus 98 ~~~ifsg~~~~~LA~~Ia~~Lg~~l~~~~~~~FpDGE~~v~i--~~~VrG~dV~iiqs~~~p~nd~lmELll~idalr~~ 175 (355)
.+.+-.......+|+.+|+.||+++.-+.-.|..+++..+.. .+++.|++|+||.....-. . -+.-.++.||+.
T Consensus 162 ~vVVsPd~g~~~~a~~la~~l~~~~~~~~K~R~~~~~~~~~~~~~~~v~Gr~vIIVDDIidTG-~---Tl~~aa~~Lk~~ 237 (301)
T PRK07199 162 PLLIGPDEESEQWVAAVAERAGAPHAVLRKTRHGDRDVEISLPDAAPWAGRTPVLVDDIVSTG-R---TLIEAARQLRAA 237 (301)
T ss_pred cEEEEeCCChHHHHHHHHHHhCCCEEEEEEEecCCCeEEEEeccCcccCCCEEEEEecccCcH-H---HHHHHHHHHHHC
Confidence 354545566779999999999999987777777666555443 3578999999998876432 2 245677999999
Q ss_pred CCCeEEEEeeCccccccccccCCCCcchHHHHHHHHHHhCCCEEEEccCCchhhhcccCCccccccchHHHHHHHHhh
Q 018472 176 SAKNITAVIPYFGYARADRKTQGRESIAAKLVANLITEAGADRVLACDLHSGQSMGYFDIPVDHVYCQPVILDYLASK 253 (355)
Q Consensus 176 ~a~~ItlViPY~~YaRqDr~~~~ge~isak~vA~lL~~~G~d~VitvDlHs~~~~~~F~ip~~~l~a~~~La~~L~~~ 253 (355)
||++|.++.-.-=. +.....+ |...|+++|++-|-+ +.|...++.++++++.|++.
T Consensus 238 GA~~V~~~~tHgvf-------------s~~a~~~-l~~~~i~~iv~Tdti--------~~~~~~~sva~lla~~i~~~ 293 (301)
T PRK07199 238 GAASPDCVVVHALF-------------AGDAYSA-LAAAGIARVVSTDTV--------PHPSNAISLAPLLAEALRRE 293 (301)
T ss_pred CCcEEEEEEEeeeC-------------ChHHHHH-HHhCCCCEEEEeCCc--------cCCCCEEehHHHHHHHHHHH
Confidence 99999987743211 1222223 456789999998854 22333467789999999764
No 84
>COG0462 PrsA Phosphoribosylpyrophosphate synthetase [Nucleotide transport and metabolism / Amino acid transport and metabolism]
Probab=97.01 E-value=0.019 Score=56.50 Aligned_cols=136 Identities=16% Similarity=0.150 Sum_probs=93.9
Q ss_pred CEEEEE-CCCCHHHHHHHHHHhCCceeceeeeec-CCCceEEEe-ccCcCCCcEEEEccCCCCchhHHHHHHHHHHHHHh
Q 018472 98 RIKLFS-GTANPALSQEIACYMGVELGKINIKRF-ADGEIYVQL-QESVRGCDVYLVQPTCPPANENLMELLIMIDACRR 174 (355)
Q Consensus 98 ~~~ifs-g~~~~~LA~~Ia~~Lg~~l~~~~~~~F-pDGE~~v~i-~~~VrG~dV~iiqs~~~p~nd~lmELll~idalr~ 174 (355)
++.|+| -...-..|+.+|+.||.++.-++-+|- .+.|..+.. ..+|+||+|+||..+-.-. . -+.-.+++||+
T Consensus 164 d~vVVSPD~Ggv~RAr~~A~~L~~~~a~i~K~R~~~~~~v~~~~~~gdV~gk~~iiVDDiIdTg-G---Ti~~Aa~~Lk~ 239 (314)
T COG0462 164 DPVVVSPDKGGVKRARALADRLGAPLAIIDKRRDSSPNVVEVMNLIGDVEGKDVVIVDDIIDTG-G---TIAKAAKALKE 239 (314)
T ss_pred CcEEECCCccHHHHHHHHHHHhCCCEEEEEEeecCCCCeEEEeecccccCCCEEEEEecccccc-H---HHHHHHHHHHH
Confidence 355565 344669999999999999999988886 556655543 5899999999997653211 1 35778899999
Q ss_pred cCCCeEEEEeeCccccccccccCCCCcchHHHHHHHHHHhCCCEEEEccCC-chhhhcccCCccccccchHHHHHHHHhh
Q 018472 175 ASAKNITAVIPYFGYARADRKTQGRESIAAKLVANLITEAGADRVLACDLH-SGQSMGYFDIPVDHVYCQPVILDYLASK 253 (355)
Q Consensus 175 ~~a~~ItlViPY~~YaRqDr~~~~ge~isak~vA~lL~~~G~d~VitvDlH-s~~~~~~F~ip~~~l~a~~~La~~L~~~ 253 (355)
.||++|.+..-.-=+ +....+.|+...+++|++-|-= .+.. ..++ ....++-++++++.|...
T Consensus 240 ~GAk~V~a~~tH~vf--------------s~~a~~~l~~~~i~~vivTnTi~~~~~-~~~~-~~~~isva~liaeaI~ri 303 (314)
T COG0462 240 RGAKKVYAAATHGVF--------------SGAALERLEASAIDEVIVTDTIPLPEK-KKIP-KVSVISVAPLIAEAIRRI 303 (314)
T ss_pred CCCCeEEEEEEchhh--------------ChHHHHHHhcCCCCEEEEeCCcccccc-cccC-ceEEEEhHHHHHHHHHHH
Confidence 999999876533211 2334566776669999988731 1111 1112 346777899999999764
No 85
>PRK02458 ribose-phosphate pyrophosphokinase; Provisional
Probab=96.93 E-value=0.037 Score=54.82 Aligned_cols=136 Identities=15% Similarity=0.112 Sum_probs=90.4
Q ss_pred CEEEEE-CCCCHHHHHHHHHHhCCceeceeeeecCCCceEEEeccCcCCCcEEEEccCCCCchhHHHHHHHHHHHHHhcC
Q 018472 98 RIKLFS-GTANPALSQEIACYMGVELGKINIKRFADGEIYVQLQESVRGCDVYLVQPTCPPANENLMELLIMIDACRRAS 176 (355)
Q Consensus 98 ~~~ifs-g~~~~~LA~~Ia~~Lg~~l~~~~~~~FpDGE~~v~i~~~VrG~dV~iiqs~~~p~nd~lmELll~idalr~~~ 176 (355)
++.|++ ......+|+.+|+.||+++.-++..+-...+....+.++|.|++|+||....... . -|.-.+++|++.|
T Consensus 170 ~~vvV~pd~Ga~~~A~~la~~L~~~~~~~~~~r~~~~~~~~~i~gdV~gk~viIVDDIidTG-~---Tl~~aa~~Lk~~G 245 (323)
T PRK02458 170 DVVVVSPKNSGIKRARSLAEYLDAPIAIIDYAQDDSEREEGYIIGDVAGKKAILIDDILNTG-K---TFAEAAKIVEREG 245 (323)
T ss_pred ceEEEEECCChHHHHHHHHHHhCCCEEEEEEecCCCcceeeccccccCCCEEEEEcceeCcH-H---HHHHHHHHHHhCC
Confidence 344444 5667799999999999998755544422222233456789999999998776432 2 3567888999999
Q ss_pred CCeEEEEeeCccccccccccCCCCcchHHHHHHHHHHhCCCEEEEccCCchhhhcccCCccccccchHHHHHHHHhh
Q 018472 177 AKNITAVIPYFGYARADRKTQGRESIAAKLVANLITEAGADRVLACDLHSGQSMGYFDIPVDHVYCQPVILDYLASK 253 (355)
Q Consensus 177 a~~ItlViPY~~YaRqDr~~~~ge~isak~vA~lL~~~G~d~VitvDlHs~~~~~~F~ip~~~l~a~~~La~~L~~~ 253 (355)
|++|.++.-..=++. .. .+.|...|+|+|++-|-+.... ... -+...++..+++++.|.+.
T Consensus 246 A~~V~~~~tHgif~~-------------~a-~~~l~~s~i~~iv~TdTi~~~~-~~~-~k~~~isva~lla~~i~~~ 306 (323)
T PRK02458 246 ATEIYAVASHGLFAG-------------GA-AEVLENAPIKEILVTDSVATKE-RVP-KNVTYLSASELIADAIIRI 306 (323)
T ss_pred CCcEEEEEEChhcCc-------------hH-HHHHhhCCCCEEEEECCcCCch-hcC-CCcEEEEhHHHHHHHHHHH
Confidence 999998776542222 11 2345567999999999653211 111 1244566788999888654
No 86
>PRK04923 ribose-phosphate pyrophosphokinase; Provisional
Probab=96.88 E-value=0.031 Score=55.28 Aligned_cols=138 Identities=14% Similarity=0.119 Sum_probs=93.0
Q ss_pred CEEEEECCCCHHHHHHHHHHhC-CceeceeeeecCCCc-eEEEeccCcCCCcEEEEccCCCCchhHHHHHHHHHHHHHhc
Q 018472 98 RIKLFSGTANPALSQEIACYMG-VELGKINIKRFADGE-IYVQLQESVRGCDVYLVQPTCPPANENLMELLIMIDACRRA 175 (355)
Q Consensus 98 ~~~ifsg~~~~~LA~~Ia~~Lg-~~l~~~~~~~FpDGE-~~v~i~~~VrG~dV~iiqs~~~p~nd~lmELll~idalr~~ 175 (355)
.+.|-........|+.+|+.|| +++..+.-.|..+++ ....+.++|.|++|+||........ -|.-.+++||+.
T Consensus 168 ~vVVsPD~Ga~~rA~~lA~~L~~~~~~~~~K~R~~~~~~~~~~~~gdv~Gr~viIVDDIidTG~----Tl~~aa~~Lk~~ 243 (319)
T PRK04923 168 LIVVSPDVGGVVRARAVAKRLDDADLAIIDKRRPRANVATVMNIIGDVQGKTCVLVDDLVDTAG----TLCAAAAALKQR 243 (319)
T ss_pred CEEEEECCchHHHHHHHHHHcCCCCEEEeccccCCCCceEEEecccCCCCCEEEEEecccCchH----HHHHHHHHHHHC
Confidence 3555556677899999999998 788776666654443 3456668999999999988765432 246778899999
Q ss_pred CCCeEEEEeeCccccccccccCCCCcchHHHHHHHHHHhCCCEEEEccCCchhhhcccCCccccccchHHHHHHHHhh
Q 018472 176 SAKNITAVIPYFGYARADRKTQGRESIAAKLVANLITEAGADRVLACDLHSGQSMGYFDIPVDHVYCQPVILDYLASK 253 (355)
Q Consensus 176 ~a~~ItlViPY~~YaRqDr~~~~ge~isak~vA~lL~~~G~d~VitvDlHs~~~~~~F~ip~~~l~a~~~La~~L~~~ 253 (355)
||++|.++.-.-=++. ..+-++ ...|+++|++-|-.-........-+...++-.++|++.|...
T Consensus 244 GA~~V~~~~THgvfs~-------------~a~~~l-~~s~i~~iv~Tdtip~~~~~~~~~k~~~isva~lla~~i~~~ 307 (319)
T PRK04923 244 GALKVVAYITHPVLSG-------------PAVDNI-NNSQLDELVVTDTIPLSEAARACAKIRQLSVAELLAETIRRI 307 (319)
T ss_pred CCCEEEEEEECcccCc-------------hHHHHH-hhCCCCEEEEeCCccCchhhcccCCeEEEEhHHHHHHHHHHH
Confidence 9999998776532221 222333 457999999998642111100111344566789999998764
No 87
>PF15609 PRTase_2: Phosphoribosyl transferase
Probab=96.78 E-value=0.0081 Score=55.15 Aligned_cols=103 Identities=16% Similarity=0.144 Sum_probs=71.0
Q ss_pred ccchHHHHHHHHhhcCCCCCeEEEecCCChhHHHHHHHHHcCCCCEEEEEEeecCC-C--e-eE-----------E-Eee
Q 018472 240 VYCQPVILDYLASKTVSSNDLVVVSPDVGGVARARAFAKKLSDAPLAIVDKRRHGH-N--V-AE-----------V-MNL 303 (355)
Q Consensus 240 l~a~~~La~~L~~~~~~~~~~vVVspd~Ggv~rA~~lA~~L~~~p~~~v~K~R~~~-~--~-~e-----------~-~~l 303 (355)
+.+...|++.+.+.+ ..+.++||-..-+.-....+++.++. ...|+.-.|..- + . .+ . ...
T Consensus 37 ~~~~~~La~~~~~~~--~~~~lvIGfAETATgLG~~V~~~~~~-~~~ylhTTR~~v~~~~~~~~F~E~HSHAt~h~ly~~ 113 (191)
T PF15609_consen 37 RDAGRLLAAQVPEAL--PGPVLVIGFAETATGLGHGVFDALGA-ACLYLHTTREPVPGVPPLLEFEEEHSHATDHLLYPP 113 (191)
T ss_pred HHHHHHHHHHHHHhC--CCCeEEEEEhHHHHHHHHHHHHHhhh-ccceeeeccccCCCCccceeeeccccccccceecCC
Confidence 345566777777654 35689999999999999999999873 334666555321 1 0 10 0 101
Q ss_pred ecC--CCCCEEEEEeCcccchHHHHHHHHHHHHcCCCEEEEEEE
Q 018472 304 IGD--VKGKVAVMVDDMIDTAGTIAKGAALLHQEGAREVYACCT 345 (355)
Q Consensus 304 ~gd--VkGK~VLIVDDIIdTG~Tl~~aa~~Lk~~GA~~V~v~~t 345 (355)
..+ -..+.+|+|||=|+||.|+..+++.|++.-+.+=|++++
T Consensus 114 ~~~~l~~~~~lVLVDDEiSTG~T~lnli~al~~~~p~~~yvvas 157 (191)
T PF15609_consen 114 DPDLLRNARTLVLVDDEISTGNTFLNLIRALHAKYPRKRYVVAS 157 (191)
T ss_pred ChHHhcCCCCEEEEecCccchHHHHHHHHHHHHhCCCceEEEEE
Confidence 111 236799999999999999999999999987766555554
No 88
>PRK02269 ribose-phosphate pyrophosphokinase; Provisional
Probab=96.71 E-value=0.061 Score=53.20 Aligned_cols=136 Identities=13% Similarity=0.156 Sum_probs=89.5
Q ss_pred EEEEECCCCHHHHHHHHHHhCCceeceeeeecCC---CceEEEeccCcCCCcEEEEccCCCCchhHHHHHHHHHHHHHhc
Q 018472 99 IKLFSGTANPALSQEIACYMGVELGKINIKRFAD---GEIYVQLQESVRGCDVYLVQPTCPPANENLMELLIMIDACRRA 175 (355)
Q Consensus 99 ~~ifsg~~~~~LA~~Ia~~Lg~~l~~~~~~~FpD---GE~~v~i~~~VrG~dV~iiqs~~~p~nd~lmELll~idalr~~ 175 (355)
+.|=.....-.+|+.+|+.||.++.-++-++-.+ -+....+.++++|++|+||....... . -|.-.+++||+.
T Consensus 168 vvVsPd~G~~~~A~~lA~~lg~~~~~~~k~r~~~~~~~~~~~~~~gdv~Gr~viIVDDIidTG-~---Tl~~aa~~Lk~~ 243 (320)
T PRK02269 168 VVVSPDHGGVTRARKLAQFLKTPIAIIDKRRSVDKMNTSEVMNIIGNVKGKKCILIDDMIDTA-G---TICHAADALAEA 243 (320)
T ss_pred EEEEECccHHHHHHHHHHHhCCCEEEEEecccCCCCceeEEEEeccccCCCEEEEEeeecCcH-H---HHHHHHHHHHHC
Confidence 4444456677999999999999887555444322 12234566789999999998765432 2 256778999999
Q ss_pred CCCeEEEEeeCccccccccccCCCCcchHHHHHHHHHHhCCCEEEEccCCchhhhcccCCccccccchHHHHHHHHhh
Q 018472 176 SAKNITAVIPYFGYARADRKTQGRESIAAKLVANLITEAGADRVLACDLHSGQSMGYFDIPVDHVYCQPVILDYLASK 253 (355)
Q Consensus 176 ~a~~ItlViPY~~YaRqDr~~~~ge~isak~vA~lL~~~G~d~VitvDlHs~~~~~~F~ip~~~l~a~~~La~~L~~~ 253 (355)
||++|.++.-.-=++. ..+-+ |...|+++|++-|-+-.......+ +...++-+++|++.|++.
T Consensus 244 GA~~V~~~~tHglf~~-------------~a~~~-l~~~~i~~iv~Tdti~~~~~~~~~-k~~~isva~~la~~i~~~ 306 (320)
T PRK02269 244 GATEVYASCTHPVLSG-------------PALDN-IQKSAIEKLVVLDTIYLPEERLID-KIEQISIADLLGEAIIRI 306 (320)
T ss_pred CCCEEEEEEECcccCc-------------hHHHH-HHhCCCCEEEEeCCCCCccccccC-CeEEEEhHHHHHHHHHHH
Confidence 9999998776532222 12222 345789999999965211111111 345677789999998764
No 89
>PRK01259 ribose-phosphate pyrophosphokinase; Provisional
Probab=96.70 E-value=0.057 Score=53.10 Aligned_cols=137 Identities=14% Similarity=0.094 Sum_probs=91.0
Q ss_pred EEEEECCCCHHHHHHHHHHhCCceeceeeeecCCCceE-EEeccCcCCCcEEEEccCCCCchhHHHHHHHHHHHHHhcCC
Q 018472 99 IKLFSGTANPALSQEIACYMGVELGKINIKRFADGEIY-VQLQESVRGCDVYLVQPTCPPANENLMELLIMIDACRRASA 177 (355)
Q Consensus 99 ~~ifsg~~~~~LA~~Ia~~Lg~~l~~~~~~~FpDGE~~-v~i~~~VrG~dV~iiqs~~~p~nd~lmELll~idalr~~~a 177 (355)
+.+=.......+|+.+|+.||++..-++-.+..+++.. ..+.+++.|++|+||....... . . +.-.++.+++.|+
T Consensus 161 vvv~pd~Gg~~~A~~la~~Lg~~~~~~~k~r~~~~~~~~~~~~~~~~g~~vliVDDii~TG-~-T--~~~a~~~l~~~Ga 236 (309)
T PRK01259 161 VVVSPDVGGVVRARALAKRLDADLAIIDKRRPRANVSEVMNIIGDVEGRDCILVDDMIDTA-G-T--LCKAAEALKERGA 236 (309)
T ss_pred EEEEECCCcHHHHHHHHHHhCCCEEEEEeecccceeEEEEeecccCCCCEEEEEecccCcH-H-H--HHHHHHHHHccCC
Confidence 44444567889999999999999888777766666543 3566789999999998875432 2 2 3566789999999
Q ss_pred CeEEEEeeCccccccccccCCCCcchHHHHHHHHHHhCCCEEEEccCCchhhhcccCCccccccchHHHHHHHHhh
Q 018472 178 KNITAVIPYFGYARADRKTQGRESIAAKLVANLITEAGADRVLACDLHSGQSMGYFDIPVDHVYCQPVILDYLASK 253 (355)
Q Consensus 178 ~~ItlViPY~~YaRqDr~~~~ge~isak~vA~lL~~~G~d~VitvDlHs~~~~~~F~ip~~~l~a~~~La~~L~~~ 253 (355)
++|.++.-+.=.+ .. -.+.|...++|+|++.|-+-........-+...++-++++|+.|...
T Consensus 237 ~~v~~~~tH~i~~-------------~~-a~~~l~~~~~~~iv~t~ti~~~~~~~~~~k~~~isva~~ia~~i~~~ 298 (309)
T PRK01259 237 KSVYAYATHPVLS-------------GG-AIERIENSVIDELVVTDSIPLSEEAKKCDKIRVLSVAPLLAEAIRRI 298 (309)
T ss_pred CEEEEEEEeeeCC-------------hH-HHHHHhcCCCCEEEEecCcccchhhccCCCeEEEEcHHHHHHHHHHH
Confidence 9998877422111 11 11234556899999998653211100011234566788999998764
No 90
>PRK03092 ribose-phosphate pyrophosphokinase; Provisional
Probab=96.63 E-value=0.061 Score=52.81 Aligned_cols=135 Identities=13% Similarity=0.109 Sum_probs=90.9
Q ss_pred CEEEEECCCCHHHHHHHHHHhC-CceeceeeeecCC--C-ceEEEeccCcCCCcEEEEccCCCCchhHHHHHHHHHHHHH
Q 018472 98 RIKLFSGTANPALSQEIACYMG-VELGKINIKRFAD--G-EIYVQLQESVRGCDVYLVQPTCPPANENLMELLIMIDACR 173 (355)
Q Consensus 98 ~~~ifsg~~~~~LA~~Ia~~Lg-~~l~~~~~~~FpD--G-E~~v~i~~~VrG~dV~iiqs~~~p~nd~lmELll~idalr 173 (355)
.+.|=.......+|+.+|+.|| .++.-+...|..+ + +....+.++|.|++|+||..+..-. . -+.-.++.|+
T Consensus 150 ~vvVspd~Ga~~~a~~la~~L~~~~~~~i~k~R~~~~~~~~~~~~~~~dv~gr~viIVDDIi~TG-~---Tl~~aa~~Lk 225 (304)
T PRK03092 150 VTVVSPDAGRVRVAEQWADRLGGAPLAFIHKTRDPTVPNQVVANRVVGDVEGRTCVLVDDMIDTG-G---TIAGAVRALK 225 (304)
T ss_pred cEEEEecCchHHHHHHHHHHcCCCCEEEEEEEcccCCCCceEEEecCcCCCCCEEEEEccccCcH-H---HHHHHHHHHH
Confidence 3544456677789999999999 8888887777543 2 2345667889999999998876432 2 2456778999
Q ss_pred hcCCCeEEEEeeCccccccccccCCCCcchHHHHHHHHHHhCCCEEEEccCCc--hhhhcccCCccccccchHHHHHHHH
Q 018472 174 RASAKNITAVIPYFGYARADRKTQGRESIAAKLVANLITEAGADRVLACDLHS--GQSMGYFDIPVDHVYCQPVILDYLA 251 (355)
Q Consensus 174 ~~~a~~ItlViPY~~YaRqDr~~~~ge~isak~vA~lL~~~G~d~VitvDlHs--~~~~~~F~ip~~~l~a~~~La~~L~ 251 (355)
+.||++|.++.-+-=.+ ...+-+ |...|+++|++.|-+- ...+ .-+...++-++.+++.|.
T Consensus 226 ~~Ga~~I~~~~tH~v~~-------------~~a~~~-l~~~~~~~i~~t~tip~~~~~~---~~~~~~~sva~~la~~i~ 288 (304)
T PRK03092 226 EAGAKDVIIAATHGVLS-------------GPAAER-LKNCGAREVVVTDTLPIPEEKR---FDKLTVLSIAPLLARAIR 288 (304)
T ss_pred hcCCCeEEEEEEcccCC-------------hHHHHH-HHHCCCCEEEEeeeeccchhhc---CCCeEEEEhHHHHHHHHH
Confidence 99999999887321111 112223 4456899999998642 2111 113445667889999986
Q ss_pred hh
Q 018472 252 SK 253 (355)
Q Consensus 252 ~~ 253 (355)
.-
T Consensus 289 ~~ 290 (304)
T PRK03092 289 EV 290 (304)
T ss_pred HH
Confidence 54
No 91
>PLN02369 ribose-phosphate pyrophosphokinase
Probab=96.50 E-value=0.1 Score=51.22 Aligned_cols=136 Identities=12% Similarity=0.122 Sum_probs=93.6
Q ss_pred CCEEEEE-CCCCHHHHHHHHHHh-CCceeceeeeecCCCce-EEEeccCcCCCcEEEEccCCCCchhHHHHHHHHHHHHH
Q 018472 97 NRIKLFS-GTANPALSQEIACYM-GVELGKINIKRFADGEI-YVQLQESVRGCDVYLVQPTCPPANENLMELLIMIDACR 173 (355)
Q Consensus 97 ~~~~ifs-g~~~~~LA~~Ia~~L-g~~l~~~~~~~FpDGE~-~v~i~~~VrG~dV~iiqs~~~p~nd~lmELll~idalr 173 (355)
.++.|++ -.+.-.+|+.+++.| +.+++-+..+|..++.. ...+.+++.|++|+||....... . -+.-.+++++
T Consensus 151 ~~~vvVspd~gg~~~a~~~a~~l~~~~~~~l~k~R~~~~~~~~~~~~~~v~g~~viivDDii~TG-~---Tl~~a~~~l~ 226 (302)
T PLN02369 151 PDLVVVSPDVGGVARARAFAKKLSDAPLAIVDKRRQGHNVAEVMNLIGDVKGKVAIMVDDMIDTA-G---TITKGAALLH 226 (302)
T ss_pred CceEEEEECcChHHHHHHHHHHcCCCCEEEEEEecCCcceeeeEecCCCCCCCEEEEEcCcccch-H---HHHHHHHHHH
Confidence 3455554 456779999999999 78988877777655432 34567889999999998765432 2 2466678999
Q ss_pred hcCCCeEEEEe--eCccccccccccCCCCcchHHHHHHHHHHhCCCEEEEccCCchhhhcccCCccccccchHHHHHHHH
Q 018472 174 RASAKNITAVI--PYFGYARADRKTQGRESIAAKLVANLITEAGADRVLACDLHSGQSMGYFDIPVDHVYCQPVILDYLA 251 (355)
Q Consensus 174 ~~~a~~ItlVi--PY~~YaRqDr~~~~ge~isak~vA~lL~~~G~d~VitvDlHs~~~~~~F~ip~~~l~a~~~La~~L~ 251 (355)
+.|+++|.++. |-|+ . . -.+.|...+++.|++.|-+.......|+ ....++..++|++.|.
T Consensus 227 ~~Ga~~v~~~~tH~v~~--~-------------~-a~~~l~~~~~~~iv~t~ti~~~~~~~~~-~~~~~~v~~~la~~i~ 289 (302)
T PLN02369 227 QEGAREVYACATHAVFS--P-------------P-AIERLSSGLFQEVIVTNTIPVSEKNYFP-QLTVLSVANLLGETIW 289 (302)
T ss_pred hCCCCEEEEEEEeeeeC--H-------------H-HHHHHHhCCCCEEEEeCCCCChhhcccC-CceEEEHHHHHHHHHH
Confidence 99999999888 4442 1 1 1223555689999999875322112233 3556777889999986
Q ss_pred hh
Q 018472 252 SK 253 (355)
Q Consensus 252 ~~ 253 (355)
+.
T Consensus 290 ~~ 291 (302)
T PLN02369 290 RV 291 (302)
T ss_pred HH
Confidence 64
No 92
>PF13793 Pribosyltran_N: N-terminal domain of ribose phosphate pyrophosphokinase; PDB: 2JI4_A 1DKU_B 1IBS_B 1DKR_B 3MBI_C 3LRT_B 3LPN_B 3NAG_B 2H07_B 2H06_B ....
Probab=96.31 E-value=0.063 Score=45.47 Aligned_cols=82 Identities=16% Similarity=0.198 Sum_probs=54.7
Q ss_pred EecCCChhHHHHHHHHHcCCCCEEEEEEeecCCCeeEEEeeecCCCCCEEEEEeCcccc--h--HHHHHHHHHHHHcCCC
Q 018472 263 VSPDVGGVARARAFAKKLSDAPLAIVDKRRHGHNVAEVMNLIGDVKGKVAVMVDDMIDT--A--GTIAKGAALLHQEGAR 338 (355)
Q Consensus 263 Vspd~Ggv~rA~~lA~~L~~~p~~~v~K~R~~~~~~e~~~l~gdVkGK~VLIVDDIIdT--G--~Tl~~aa~~Lk~~GA~ 338 (355)
|-...+...+|+.+++.|+ .++.-+.-++-.+++.. ..+.++++|++|+||-++... - --+.-+++++|+.||+
T Consensus 3 I~~g~~~~~La~~ia~~L~-~~~~~~~~~~F~dGE~~-v~i~~~v~g~dv~iiqs~~~~~nd~lmeLll~i~a~r~~~a~ 80 (116)
T PF13793_consen 3 IFSGSSSQDLAERIAEALG-IPLGKVETKRFPDGETY-VRIPESVRGKDVFIIQSTSPPVNDNLMELLLLIDALRRAGAK 80 (116)
T ss_dssp EEESSSGHHHHHHHHHHTT-S-EE-EEEEE-TTS-EE-EEESS--TTSEEEEE---SSSHHHHHHHHHHHHHHHHHTTBS
T ss_pred EEECCCCHHHHHHHHHHhC-CceeeeEEEEcCCCCEE-EEecccccCCceEEEEecCCchhHHHHHHHHHHHHHHHcCCc
Confidence 3445678889999999997 88877766665444332 356678999999999998865 1 2355677899999999
Q ss_pred EEEEEEEc
Q 018472 339 EVYACCTH 346 (355)
Q Consensus 339 ~V~v~~tH 346 (355)
+|.++..+
T Consensus 81 ~i~~ViPY 88 (116)
T PF13793_consen 81 RITLVIPY 88 (116)
T ss_dssp EEEEEESS
T ss_pred EEEEeccc
Confidence 99988754
No 93
>PRK06827 phosphoribosylpyrophosphate synthetase; Provisional
Probab=96.05 E-value=0.17 Score=51.35 Aligned_cols=138 Identities=15% Similarity=0.150 Sum_probs=88.3
Q ss_pred EEEEECCCCHHHHHHHHHHhCCceeceeeeecCCCc-------eEEEecc-CcCCCcEEEEccCCCCchhHHHHHHHHHH
Q 018472 99 IKLFSGTANPALSQEIACYMGVELGKINIKRFADGE-------IYVQLQE-SVRGCDVYLVQPTCPPANENLMELLIMID 170 (355)
Q Consensus 99 ~~ifsg~~~~~LA~~Ia~~Lg~~l~~~~~~~FpDGE-------~~v~i~~-~VrG~dV~iiqs~~~p~nd~lmELll~id 170 (355)
+.+-.-...-..|+.+|+.||.++.-+.-.|..+++ +...+.. +|.|++|+||..+..... -|.-.++
T Consensus 210 VVVsPD~Gg~~rA~~~A~~Lg~~~ai~~K~R~~~~~~~g~~~~~~~~~~g~dV~gr~vIIVDDII~TG~----Tl~~aa~ 285 (382)
T PRK06827 210 MVISPDTGAMDRAKYYASVLGVDLGLFYKRRDYSRVVNGRNPIVAHEFLGRDVEGKDVLIVDDMIASGG----SMIDAAK 285 (382)
T ss_pred EEEEECccchHHHHHHHHHhCCCEEEEEcccCCcccccCCCceEEEecCCcccCCCEEEEEeCCcCcHH----HHHHHHH
Confidence 444445566789999999999998877766643322 2334444 899999999988765322 2577888
Q ss_pred HHHhcCCCeEEEEeeCccccccccccCCCCcchHHHHHHHHHHhCCCEEEEccCC--chhhhcccCCccccccchHHHHH
Q 018472 171 ACRRASAKNITAVIPYFGYARADRKTQGRESIAAKLVANLITEAGADRVLACDLH--SGQSMGYFDIPVDHVYCQPVILD 248 (355)
Q Consensus 171 alr~~~a~~ItlViPY~~YaRqDr~~~~ge~isak~vA~lL~~~G~d~VitvDlH--s~~~~~~F~ip~~~l~a~~~La~ 248 (355)
.||+.||++|.++...--++ . - ...+.+.+...++++|++-|-+ ...... .-....++-+++||+
T Consensus 286 ~Lk~~GA~~V~~~~tH~vf~-~-a---------~~~l~~~~~~g~i~~iv~TdTi~~~~~~~~--~~~~~~isva~llA~ 352 (382)
T PRK06827 286 ELKSRGAKKIIVAATFGFFT-N-G---------LEKFDKAYEEGYFDRIIGTNLVYHPEELLS--KPWYIEVDMSKLIAR 352 (382)
T ss_pred HHHHcCCCEEEEEEEeecCh-H-H---------HHHHHhhcccCCCCEEEEeCCCcCchhhcc--cCCeEEEEcHHHHHH
Confidence 99999999999876654333 1 0 1112222233359999998853 222111 012345667899999
Q ss_pred HHHhh
Q 018472 249 YLASK 253 (355)
Q Consensus 249 ~L~~~ 253 (355)
.|...
T Consensus 353 ~I~~~ 357 (382)
T PRK06827 353 IIDAL 357 (382)
T ss_pred HHHHH
Confidence 98654
No 94
>PRK02812 ribose-phosphate pyrophosphokinase; Provisional
Probab=96.02 E-value=0.24 Score=49.30 Aligned_cols=135 Identities=14% Similarity=0.131 Sum_probs=91.1
Q ss_pred CEEEEE-CCCCHHHHHHHHHHhC-CceeceeeeecCCCc-eEEEeccCcCCCcEEEEccCCCCchhHHHHHHHHHHHHHh
Q 018472 98 RIKLFS-GTANPALSQEIACYMG-VELGKINIKRFADGE-IYVQLQESVRGCDVYLVQPTCPPANENLMELLIMIDACRR 174 (355)
Q Consensus 98 ~~~ifs-g~~~~~LA~~Ia~~Lg-~~l~~~~~~~FpDGE-~~v~i~~~VrG~dV~iiqs~~~p~nd~lmELll~idalr~ 174 (355)
++.|++ -.+...+|+.+|+.|+ .+...+.-++-.+++ ....+.+++.|++|+||....... . -+.-.++++|+
T Consensus 180 ~~vvVsPD~gg~~ra~~~A~~L~~~~~~~~~k~R~~~~~~~~~~~~~~v~g~~viiVDDii~TG-~---T~~~a~~~L~~ 255 (330)
T PRK02812 180 DIVVVSPDVGGVARARAFAKKLNDAPLAIIDKRRQAHNVAEVLNVIGDVKGKTAILVDDMIDTG-G---TICEGARLLRK 255 (330)
T ss_pred CeEEEEECCccHHHHHHHHHHhCCCCEEEEEeeccCCceeeeEeccccCCCCEEEEEccccCcH-H---HHHHHHHHHhc
Confidence 455554 4556789999999995 788877766655443 234556789999999998765432 2 24567799999
Q ss_pred cCCCeEEEEe--eCccccccccccCCCCcchHHHHHHHHHHhCCCEEEEccCCchhhhcccCCccccccchHHHHHHHHh
Q 018472 175 ASAKNITAVI--PYFGYARADRKTQGRESIAAKLVANLITEAGADRVLACDLHSGQSMGYFDIPVDHVYCQPVILDYLAS 252 (355)
Q Consensus 175 ~~a~~ItlVi--PY~~YaRqDr~~~~ge~isak~vA~lL~~~G~d~VitvDlHs~~~~~~F~ip~~~l~a~~~La~~L~~ 252 (355)
.|+++|.++. |-|+ ...+-+ |...++|+|++.|-+......-|+ +...++..++|++.|..
T Consensus 256 ~Ga~~v~~~~tH~v~s---------------~~a~~~-l~~~~id~iv~tnti~~~~~~~~~-~~~~~~va~lla~~i~~ 318 (330)
T PRK02812 256 EGAKQVYACATHAVFS---------------PPAIER-LSSGLFEEVIVTNTIPVPEERRFP-QLKVLSVANMLGEAIWR 318 (330)
T ss_pred cCCCeEEEEEEcccCC---------------hHHHHH-HhhCCCCEEEEeCCCCChhhcccC-CceEEEHHHHHHHHHHH
Confidence 9999999888 5443 112222 345689999999976421111122 34566778899998876
Q ss_pred h
Q 018472 253 K 253 (355)
Q Consensus 253 ~ 253 (355)
.
T Consensus 319 ~ 319 (330)
T PRK02812 319 I 319 (330)
T ss_pred H
Confidence 4
No 95
>PRK00553 ribose-phosphate pyrophosphokinase; Provisional
Probab=95.96 E-value=0.24 Score=49.26 Aligned_cols=138 Identities=9% Similarity=0.087 Sum_probs=91.4
Q ss_pred CEEEEE-CCCCHHHHHHHHHHhCCceeceeeeecCCCce-EEEeccCcCCCcEEEEccCCCCchhHHHHHHHHHHHHHhc
Q 018472 98 RIKLFS-GTANPALSQEIACYMGVELGKINIKRFADGEI-YVQLQESVRGCDVYLVQPTCPPANENLMELLIMIDACRRA 175 (355)
Q Consensus 98 ~~~ifs-g~~~~~LA~~Ia~~Lg~~l~~~~~~~FpDGE~-~v~i~~~VrG~dV~iiqs~~~p~nd~lmELll~idalr~~ 175 (355)
++.|++ -...-..|+.+|+.||.++.-++-.+...++. ...+.+++.|++|+||....... .. +...++.+++.
T Consensus 169 ~~vvVsPD~gg~~rA~~lA~~lg~~~~vi~K~r~~~~~~~~~~~~gdv~Gk~VIIVDDIi~TG-~T---l~~aa~~Lk~~ 244 (332)
T PRK00553 169 DLVVVSPDYGGVKRARLIAESLELPLAIIDKRRPKHNVAESINVLGEVKNKNCLIVDDMIDTG-GT---VIAAAKLLKKQ 244 (332)
T ss_pred CeEEEEECCCcHHHHHHHHHHhCCCEEEEEEecCCcceEeeEEeeccCCCCEEEEEeccccch-HH---HHHHHHHHHHc
Confidence 344554 45577999999999999988777777655432 23456789999999998876432 22 45667889999
Q ss_pred CCCeEEEEeeCccccccccccCCCCcchHHHHHHH---HHHhCCCEEEEccCCchhhhcccCCccccccchHHHHHHHHh
Q 018472 176 SAKNITAVIPYFGYARADRKTQGRESIAAKLVANL---ITEAGADRVLACDLHSGQSMGYFDIPVDHVYCQPVILDYLAS 252 (355)
Q Consensus 176 ~a~~ItlViPY~~YaRqDr~~~~ge~isak~vA~l---L~~~G~d~VitvDlHs~~~~~~F~ip~~~l~a~~~La~~L~~ 252 (355)
||++|.++.-.-=++. ...-++ ++..++++|++-|-+-...... .-+...++-++.+++.|..
T Consensus 245 GA~~V~~~atHglf~~-------------~a~~~l~~~~~~~~i~~iv~Tntip~~~~~~-~~~~~~vsva~~la~~i~~ 310 (332)
T PRK00553 245 KAKKVCVMATHGLFNK-------------NAIQLFDEAFKKKLIDKLFVSNSIPQTKFEK-KPQFKVVDLAHLYEEVLLC 310 (332)
T ss_pred CCcEEEEEEEeeecCc-------------hHHHHHHhccccCCCCEEEEeCCccCccccc-CCCeEEEEhHHHHHHHHHH
Confidence 9999998775432222 222233 3345899999999753211100 1134566778999999865
Q ss_pred h
Q 018472 253 K 253 (355)
Q Consensus 253 ~ 253 (355)
-
T Consensus 311 ~ 311 (332)
T PRK00553 311 Y 311 (332)
T ss_pred H
Confidence 4
No 96
>PTZ00145 phosphoribosylpyrophosphate synthetase; Provisional
Probab=95.93 E-value=0.34 Score=50.04 Aligned_cols=137 Identities=11% Similarity=0.065 Sum_probs=91.3
Q ss_pred EEEEEC-CCCHHHHHHHHHHhC------CceeceeeeecCCCceE-EEeccCcCCCcEEEEccCCCCchhHHHHHHHHHH
Q 018472 99 IKLFSG-TANPALSQEIACYMG------VELGKINIKRFADGEIY-VQLQESVRGCDVYLVQPTCPPANENLMELLIMID 170 (355)
Q Consensus 99 ~~ifsg-~~~~~LA~~Ia~~Lg------~~l~~~~~~~FpDGE~~-v~i~~~VrG~dV~iiqs~~~p~nd~lmELll~id 170 (355)
..|++- ......|+.+|+.|+ .++.-++-.|..++|+. ..+.++|.|++|+||..+..-. .. |.-.+.
T Consensus 281 pVVVsPD~Ga~~RAr~~A~~L~~~~~~~~~~avl~K~R~~~~~v~~~~lvgdV~Gk~vIIVDDIIdTG-~T---l~~aa~ 356 (439)
T PTZ00145 281 PVIVSPDAGGVYRARKFQDGLNHRGISDCGIAMLIKQRTKPNEIEKMDLVGNVYDSDVIIVDDMIDTS-GT---LCEAAK 356 (439)
T ss_pred cEEEccCcchHHHHHHHHHHhccccccCCCEEEEEeecCCCCceEEEeccCCCCCCEEEEEcceeCcH-HH---HHHHHH
Confidence 445543 335689999999998 57777776777777654 4456899999999998876432 22 456778
Q ss_pred HHHhcCCCeEEEEeeCccccccccccCCCCcchHHHHHHHHHHhCCCEEEEccCCchhhhcccCCccccccchHHHHHHH
Q 018472 171 ACRRASAKNITAVIPYFGYARADRKTQGRESIAAKLVANLITEAGADRVLACDLHSGQSMGYFDIPVDHVYCQPVILDYL 250 (355)
Q Consensus 171 alr~~~a~~ItlViPY~~YaRqDr~~~~ge~isak~vA~lL~~~G~d~VitvDlHs~~~~~~F~ip~~~l~a~~~La~~L 250 (355)
+|++.||++|.++.-.-= ++...+.++ ...|+++|++-|-+-........-+...++-.++||+.|
T Consensus 357 ~Lk~~GA~~V~~~~THgl-------------fs~~A~~rl-~~s~i~~IvvTdTIp~~~~~~~~~k~~visVA~llAeaI 422 (439)
T PTZ00145 357 QLKKHGARRVFAFATHGL-------------FSGPAIERI-EASPLEEVVVTDTVKSNKNIDSCKKITKLSVSVLVADAI 422 (439)
T ss_pred HHHHcCCCEEEEEEEccc-------------CChhHHHHH-hcCCCCEEEEeCCCcCchhhcccCCeEEEEhHHHHHHHH
Confidence 899999999998765432 222333344 557999999999642111100011244567789999998
Q ss_pred Hhh
Q 018472 251 ASK 253 (355)
Q Consensus 251 ~~~ 253 (355)
...
T Consensus 423 ~~i 425 (439)
T PTZ00145 423 RRI 425 (439)
T ss_pred HHH
Confidence 764
No 97
>PLN02297 ribose-phosphate pyrophosphokinase
Probab=93.10 E-value=1.3 Score=44.04 Aligned_cols=85 Identities=11% Similarity=0.026 Sum_probs=60.7
Q ss_pred EEEecCCChhHHHHHHHHHcCCCCEEEEEEeecCCCeeEEE-eeecCCCCCEEEEEeCcccchHH---HHHHHHHHHHcC
Q 018472 261 VVVSPDVGGVARARAFAKKLSDAPLAIVDKRRHGHNVAEVM-NLIGDVKGKVAVMVDDMIDTAGT---IAKGAALLHQEG 336 (355)
Q Consensus 261 vVVspd~Ggv~rA~~lA~~L~~~p~~~v~K~R~~~~~~e~~-~l~gdVkGK~VLIVDDIIdTG~T---l~~aa~~Lk~~G 336 (355)
+++-...++..+|+.+|+.+.+.++.-+..++-.++..++. .+..++.|++|+||=.+..- .- +.-+++.|++.|
T Consensus 17 ~~i~~g~~~~~LA~~ia~~l~g~~l~~~~~~~FpDGE~~v~v~~~~~vrg~~V~ivqs~~~p-d~lmELLl~~dAlr~~g 95 (326)
T PLN02297 17 VHLFYCEETEELARKIAAESDAIELGSINWRKFPDGFPNLFINNAHGIRGQHVAFLASFSSP-AVIFEQLSVIYALPKLF 95 (326)
T ss_pred eEEEECCCCHHHHHHHHHHhCCCceeeeEEEECCCCCEEEEEcCCCCcCCCeEEEECCCCCC-hHHHHHHHHHHHHHHcC
Confidence 34444567788999999986238888887777655543332 34568999999999775533 33 344668889999
Q ss_pred CCEEEEEEEc
Q 018472 337 AREVYACCTH 346 (355)
Q Consensus 337 A~~V~v~~tH 346 (355)
|++|.++...
T Consensus 96 a~~i~~ViPY 105 (326)
T PLN02297 96 VASFTLVLPF 105 (326)
T ss_pred CCEEEEEeeC
Confidence 9999988764
No 98
>PRK09162 hypoxanthine-guanine phosphoribosyltransferase; Provisional
Probab=92.04 E-value=1.6 Score=39.53 Aligned_cols=84 Identities=14% Similarity=0.231 Sum_probs=57.8
Q ss_pred CEEEEECCCCHHHHHHHHHHhCCce--eceeeeecCCCc----eEEE--eccCcCCCcEEEEccCCCCchhHHHHHHHHH
Q 018472 98 RIKLFSGTANPALSQEIACYMGVEL--GKINIKRFADGE----IYVQ--LQESVRGCDVYLVQPTCPPANENLMELLIMI 169 (355)
Q Consensus 98 ~~~ifsg~~~~~LA~~Ia~~Lg~~l--~~~~~~~FpDGE----~~v~--i~~~VrG~dV~iiqs~~~p~nd~lmELll~i 169 (355)
.+.|=-.+....+|..+|+.||+++ .-+...++.+++ +... ...+++|++|+||....... .. |...+
T Consensus 42 ~viV~i~~gg~~~A~~La~~l~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~v~gk~VLIVDDIidTG--~T--l~~~~ 117 (181)
T PRK09162 42 PLVLCVMGGGLVFTGQLLPRLDFPLEFDYLHATRYRNETTGGELVWKVKPRESLKGRTVLVVDDILDEG--HT--LAAIR 117 (181)
T ss_pred eEEEEECCCcHHHHHHHHHHcCCCcccCEEEEEecCCCccCCceeEecCCCCCCCCCEEEEEccccCcH--HH--HHHHH
Confidence 3444446778899999999999874 456666766643 2222 23578999999997765432 22 34566
Q ss_pred HHHHhcCCCeEEEEee
Q 018472 170 DACRRASAKNITAVIP 185 (355)
Q Consensus 170 dalr~~~a~~ItlViP 185 (355)
+.+++.|+++|.+..-
T Consensus 118 ~~Lk~~Ga~~V~~avL 133 (181)
T PRK09162 118 DRCLEMGAAEVYSAVL 133 (181)
T ss_pred HHHHhCCCCEEEEEEE
Confidence 7789999999987753
No 99
>PRK15423 hypoxanthine phosphoribosyltransferase; Provisional
Probab=90.86 E-value=4 Score=37.01 Aligned_cols=83 Identities=11% Similarity=0.149 Sum_probs=59.2
Q ss_pred EEEEECCCCHHHHHHHHHHhCCc--eeceeeeecC-----CCceEEEe--ccCcCCCcEEEEccCCCCchhHHHHHHHHH
Q 018472 99 IKLFSGTANPALSQEIACYMGVE--LGKINIKRFA-----DGEIYVQL--QESVRGCDVYLVQPTCPPANENLMELLIMI 169 (355)
Q Consensus 99 ~~ifsg~~~~~LA~~Ia~~Lg~~--l~~~~~~~Fp-----DGE~~v~i--~~~VrG~dV~iiqs~~~p~nd~lmELll~i 169 (355)
+.|--...+-.+|..+++.|+.+ +.-+.+.+|- +|++.+.. ..+++|++|+||......- ..|. .+.
T Consensus 37 vvvgI~~Gg~~fa~~L~~~L~~~~~v~~l~~ssY~~~~~~~~~v~i~~~~~~~v~gk~VLlVDDIiDTG--~TL~--~l~ 112 (178)
T PRK15423 37 VLVGLLRGSFMFMADLCREVQVSHEVDFMTASSYGSGMSTTRDVKILKDLDEDIRGKDVLIVEDIIDSG--NTLS--KVR 112 (178)
T ss_pred EEEEEecCChHHHHHHHHHhCCCcceeEEEEEEecCCCcccCceEEecCCCCCCCCCEEEEEeeecCch--HHHH--HHH
Confidence 33333577889999999999986 5588899996 35565553 3578999999998765432 2332 566
Q ss_pred HHHHhcCCCeEEEEee
Q 018472 170 DACRRASAKNITAVIP 185 (355)
Q Consensus 170 dalr~~~a~~ItlViP 185 (355)
+.++..+++++..+.-
T Consensus 113 ~~l~~~~~~~v~~avL 128 (178)
T PRK15423 113 EILSLREPKSLAICTL 128 (178)
T ss_pred HHHHhCCCCEEEEEEE
Confidence 6788889998865543
No 100
>TIGR01203 HGPRTase hypoxanthine phosphoribosyltransferase. Sequence differences as small as a single residue can affect whether members of this family act on hypoxanthine and guanine or hypoxanthine only. The designation of this model as equivalog reflects hypoxanthine specificity and does not reflect whether or not guanine can replace hypoxanthine.
Probab=90.50 E-value=3.1 Score=37.11 Aligned_cols=84 Identities=17% Similarity=0.335 Sum_probs=57.5
Q ss_pred CEEEE-ECCCCHHHHHHHHHHhCCc--eeceeeeecCCC-----ceEE--EeccCcCCCcEEEEccCCCCchhHHHHHHH
Q 018472 98 RIKLF-SGTANPALSQEIACYMGVE--LGKINIKRFADG-----EIYV--QLQESVRGCDVYLVQPTCPPANENLMELLI 167 (355)
Q Consensus 98 ~~~if-sg~~~~~LA~~Ia~~Lg~~--l~~~~~~~FpDG-----E~~v--~i~~~VrG~dV~iiqs~~~p~nd~lmELll 167 (355)
+..|+ ...+.-.+|..+++.||.+ ++.+.+..|-|+ +..+ .+..++.|++|+||......- .. +..
T Consensus 27 ~~vvv~i~~GG~~~a~~l~~~L~~~~~v~~i~~~~Y~~~~~~~~~~~~~~~~~~~~~gk~vlivDDii~TG-~T---l~~ 102 (166)
T TIGR01203 27 PLVLLCVLKGSFPFFADLIRYIAVPVQVDFMAVSSYGNGMQSSGDVKILKDLDLSIKGKDVLIVEDIVDTG-LT---LQY 102 (166)
T ss_pred CeEEEEEccCCHHHHHHHHHhcCCCceeeEEEEeeccCCCcccCceEEecCCCCCCCCCEEEEEeeeeCcH-HH---HHH
Confidence 34444 4567889999999999975 556777766544 2332 245678999999998765432 22 345
Q ss_pred HHHHHHhcCCCeEEEEee
Q 018472 168 MIDACRRASAKNITAVIP 185 (355)
Q Consensus 168 ~idalr~~~a~~ItlViP 185 (355)
.+++++..++++|.++.-
T Consensus 103 ~~~~l~~~g~~~i~~~~l 120 (166)
T TIGR01203 103 LLDLLKARKPKSLKIVTL 120 (166)
T ss_pred HHHHHHHCCCCEEEEEEE
Confidence 567788889998886653
No 101
>PRK00129 upp uracil phosphoribosyltransferase; Reviewed
Probab=89.80 E-value=4.2 Score=37.58 Aligned_cols=84 Identities=21% Similarity=0.322 Sum_probs=62.5
Q ss_pred CEEEEE-CCCCHHHHHHHHHHhC-CceeceeeeecCC-Cc---eEEEeccCcCCCcEEEEccCCCCchhHHHHHHHHHHH
Q 018472 98 RIKLFS-GTANPALSQEIACYMG-VELGKINIKRFAD-GE---IYVQLQESVRGCDVYLVQPTCPPANENLMELLIMIDA 171 (355)
Q Consensus 98 ~~~ifs-g~~~~~LA~~Ia~~Lg-~~l~~~~~~~FpD-GE---~~v~i~~~VrG~dV~iiqs~~~p~nd~lmELll~ida 171 (355)
++++++ ..+...+++.+++.|+ .+++.+...+... ++ .+.+++.++.|++|+|+..+-..-+ -+...++.
T Consensus 71 ~~vvV~IlrgG~~~~~~l~~~l~~~~~~~i~~~r~~~t~~~~~~~~~lp~~i~~~~VllvDd~laTG~----Tl~~ai~~ 146 (209)
T PRK00129 71 KLVIVPILRAGLGMVDGVLKLIPSARVGHIGLYRDEETLEPVEYYVKLPEDIDERTVIVVDPMLATGG----SAIAAIDL 146 (209)
T ss_pred eEEEEEEeCCCHHHHHHHHHhCCcCeeeeEEEEeCCCCCCCEEEEeeCCCcCCCCEEEEECCcccchH----HHHHHHHH
Confidence 455555 5788899999999998 5888877766432 12 3777888999999999987654322 24567788
Q ss_pred HHhcCCCeEEEEee
Q 018472 172 CRRASAKNITAVIP 185 (355)
Q Consensus 172 lr~~~a~~ItlViP 185 (355)
+++.|+++|.++.-
T Consensus 147 L~~~G~~~I~~~~l 160 (209)
T PRK00129 147 LKKRGAKNIKVLCL 160 (209)
T ss_pred HHHcCCCEEEEEEE
Confidence 88999999987765
No 102
>PF14572 Pribosyl_synth: Phosphoribosyl synthetase-associated domain; PDB: 2H07_B 2H06_B 3S5J_B 2HCR_A 3EFH_A 2H08_A 1DKR_B 1DKU_B 1IBS_B 2JI4_A ....
Probab=89.74 E-value=1.1 Score=41.17 Aligned_cols=97 Identities=12% Similarity=0.166 Sum_probs=61.9
Q ss_pred EEeccCcCCCcEEEEccCCCCchhHHHHHHHHHHHHHhcCCCeEEEEeeCccccccccccCCCCcchHHHHHHHHHHhCC
Q 018472 137 VQLQESVRGCDVYLVQPTCPPANENLMELLIMIDACRRASAKNITAVIPYFGYARADRKTQGRESIAAKLVANLITEAGA 216 (355)
Q Consensus 137 v~i~~~VrG~dV~iiqs~~~p~nd~lmELll~idalr~~~a~~ItlViPY~~YaRqDr~~~~ge~isak~vA~lL~~~G~ 216 (355)
+.+-++|.|++++||..+.... . -+.-.++.||+.||++|.++.-+-=++- + -.+.|+...+
T Consensus 75 ~~vVGDV~gk~~IIvDDiIdtg-~---Tl~~aA~~Lk~~GA~~V~~~aTHgvfs~--------~------A~~~l~~s~I 136 (184)
T PF14572_consen 75 MNVVGDVKGKICIIVDDIIDTG-G---TLIKAAELLKERGAKKVYACATHGVFSG--------D------APERLEESPI 136 (184)
T ss_dssp EEEES--TTSEEEEEEEEESST-H---HHHHHHHHHHHTTESEEEEEEEEE---T--------T------HHHHHHHSSE
T ss_pred eEEEEEccCCeEeeecccccch-H---HHHHHHHHHHHcCCCEEEEEEeCcccCc--------h------HHHHHhhcCC
Confidence 5566899999999998775432 2 3567788999999999998876643332 1 1245677789
Q ss_pred CEEEEccCC--chhhhcccCCccccccchHHHHHHHHhh
Q 018472 217 DRVLACDLH--SGQSMGYFDIPVDHVYCQPVILDYLASK 253 (355)
Q Consensus 217 d~VitvDlH--s~~~~~~F~ip~~~l~a~~~La~~L~~~ 253 (355)
|+|++-|-. ..+... . -....++-.++|++.|...
T Consensus 137 d~vvvTnTIp~~~~~~~-~-~Ki~vldis~llaeaI~ri 173 (184)
T PF14572_consen 137 DEVVVTNTIPQEEQKLQ-C-PKIKVLDISPLLAEAIRRI 173 (184)
T ss_dssp SEEEEETTS--HHHHHH---TTEEEE--HHHHHHHHHHH
T ss_pred eEEEEeccccCchhhhc-C-CCEeEeehHHHHHHHHHHH
Confidence 999998853 222211 1 2345667788899888754
No 103
>PLN02440 amidophosphoribosyltransferase
Probab=89.24 E-value=3 Score=43.64 Aligned_cols=120 Identities=16% Similarity=0.220 Sum_probs=70.9
Q ss_pred CCEEEEECCCCHHHHHHHHHHhCCceeceee-eecC------------CCceEEEec---cCcCCCcEEEEccCCCCchh
Q 018472 97 NRIKLFSGTANPALSQEIACYMGVELGKINI-KRFA------------DGEIYVQLQ---ESVRGCDVYLVQPTCPPANE 160 (355)
Q Consensus 97 ~~~~ifsg~~~~~LA~~Ia~~Lg~~l~~~~~-~~Fp------------DGE~~v~i~---~~VrG~dV~iiqs~~~p~nd 160 (355)
..+.|---.+...+|..+|+.+|+++...-+ .++. ++++..++. ..+.|++|+||...-.. -
T Consensus 276 ~d~vvpVP~s~~~~A~~la~~lgiP~~~~lvr~ry~~rt~i~~~q~~r~~~~~~k~~~~~~~v~gk~VlLVDDiitt--G 353 (479)
T PLN02440 276 CDVVIPVPDSGRVAALGYAAKLGVPFQQGLIRSHYVGRTFIEPSQKIRDFSVKLKLNPVRSVLEGKRVVVVDDSIVR--G 353 (479)
T ss_pred CCEEEEeCCcHHHHHHHHHHHhCCCchhheEEEeeccccccCcchhhhhhhheeeeecccccccCceEEEEeceeCc--H
Confidence 3454444455678999999999998763211 2222 233444442 45899999998764322 1
Q ss_pred HHHHHHHHHHHHHhcCCCeEEEEee--------CccccccccccCCCCcchHHHHHHHHHHhCCCEEEEcc
Q 018472 161 NLMELLIMIDACRRASAKNITAVIP--------YFGYARADRKTQGRESIAAKLVANLITEAGADRVLACD 223 (355)
Q Consensus 161 ~lmELll~idalr~~~a~~ItlViP--------Y~~YaRqDr~~~~ge~isak~vA~lL~~~G~d~VitvD 223 (355)
. -|--+++.||++||++|.+++- |++..=.||.+.-+--.+...+++. .|+|.+.-+.
T Consensus 354 t--Tl~~i~~~L~~aGa~~V~v~v~~p~~~~p~~~G~d~p~~~~li~~~~~~~ei~~~---~~~dsl~~l~ 419 (479)
T PLN02440 354 T--TSSKIVRMLREAGAKEVHMRIASPPIIASCYYGVDTPSREELISNRMSVEEIRKF---IGCDSLAFLP 419 (479)
T ss_pred H--HHHHHHHHHHhcCCCEEEEEEECCcccccceeeccCCCHHHHhhcCCCHHHHHHH---hCCCEEEEec
Confidence 1 2344678899999999886653 3344444444332223444455554 4778777544
No 104
>KOG1017 consensus Predicted uracil phosphoribosyltransferase [General function prediction only]
Probab=89.06 E-value=0.52 Score=43.84 Aligned_cols=38 Identities=18% Similarity=0.415 Sum_probs=34.7
Q ss_pred eeecCCCCCEEEEEeCcccchHHHHHHHHHHHHcCCCE
Q 018472 302 NLIGDVKGKVAVMVDDMIDTAGTIAKGAALLHQEGARE 339 (355)
Q Consensus 302 ~l~gdVkGK~VLIVDDIIdTG~Tl~~aa~~Lk~~GA~~ 339 (355)
.+..|+.-|+|++.=.|++||.|+.+|++.|+++|...
T Consensus 182 rfppDI~sR~VLLmYPi~stGnTV~~Av~VL~EhgVp~ 219 (267)
T KOG1017|consen 182 RFPPDITSRRVLLMYPIISTGNTVCKAVEVLKEHGVPD 219 (267)
T ss_pred ecCCcccceeEEEEeeeecCCccHHHHHHHHHHcCCCc
Confidence 55668999999999999999999999999999999853
No 105
>PRK02304 adenine phosphoribosyltransferase; Provisional
Probab=87.75 E-value=7.3 Score=34.78 Aligned_cols=79 Identities=13% Similarity=0.106 Sum_probs=51.0
Q ss_pred CEEEEECCCCHHHHHHHHHHhCCceeceeeee-cC-----------CCceEEEecc--CcCCCcEEEEccCCCCchhHHH
Q 018472 98 RIKLFSGTANPALSQEIACYMGVELGKINIKR-FA-----------DGEIYVQLQE--SVRGCDVYLVQPTCPPANENLM 163 (355)
Q Consensus 98 ~~~ifsg~~~~~LA~~Ia~~Lg~~l~~~~~~~-Fp-----------DGE~~v~i~~--~VrG~dV~iiqs~~~p~nd~lm 163 (355)
...+=.....-.+|..+|..||+++.-+.-.+ ++ .|+-.+.+.. .++|++|+||....... .
T Consensus 53 d~Ivgv~~~Gi~~a~~la~~l~~p~~~~rk~~~~~~~~~~~~~~~~~~~~~l~l~~~~~~~g~~VLIVDDivtTG-~--- 128 (175)
T PRK02304 53 DKIVGIEARGFIFGAALAYKLGIGFVPVRKPGKLPRETISESYELEYGTDTLEIHKDAIKPGDRVLIVDDLLATG-G--- 128 (175)
T ss_pred CEEEEEccchHHHHHHHHHHhCCCEEEEEcCCCCCCceEeEEEecccCceEEEEchhhcCCCCEEEEEeCCcccc-H---
Confidence 44333345677999999999999976433221 11 2334444433 37899999998765432 1
Q ss_pred HHHHHHHHHHhcCCCeE
Q 018472 164 ELLIMIDACRRASAKNI 180 (355)
Q Consensus 164 ELll~idalr~~~a~~I 180 (355)
-+.-+++.++++|++.+
T Consensus 129 Tl~~~~~~l~~~Ga~~v 145 (175)
T PRK02304 129 TLEAAIKLLERLGAEVV 145 (175)
T ss_pred HHHHHHHHHHHcCCEEE
Confidence 24667788889999755
No 106
>TIGR01091 upp uracil phosphoribosyltransferase. that includes uracil phosphoribosyltransferase, uridine kinases, and other, uncharacterized proteins.
Probab=87.41 E-value=6.4 Score=36.35 Aligned_cols=85 Identities=16% Similarity=0.284 Sum_probs=63.1
Q ss_pred CCEEEEE-CCCCHHHHHHHHHHhC-CceeceeeeecCC-Cc---eEEEeccCcCCCcEEEEccCCCCchhHHHHHHHHHH
Q 018472 97 NRIKLFS-GTANPALSQEIACYMG-VELGKINIKRFAD-GE---IYVQLQESVRGCDVYLVQPTCPPANENLMELLIMID 170 (355)
Q Consensus 97 ~~~~ifs-g~~~~~LA~~Ia~~Lg-~~l~~~~~~~FpD-GE---~~v~i~~~VrG~dV~iiqs~~~p~nd~lmELll~id 170 (355)
+++++++ ..+.-.+++.+.+.|+ .+++.+...+... +| .+.++++++.|++|+|+..+-..-+ -+...++
T Consensus 68 ~~i~~V~ILrgg~~~~~~l~~~l~~~~v~~i~~~r~~~t~~~~~~~~~lp~~i~~~~VllvDd~laTG~----Tl~~ai~ 143 (207)
T TIGR01091 68 KKIVLVPILRAGLGMVDGVLKLIPEAKVGHVGAYRNEETLKPVPYYSKLPEDIDERTVIVLDPMLATGG----TMIAALD 143 (207)
T ss_pred CcEEEEEEeCCcHHHHHHHHHhCCcCceeEEEEEeCCCCCCCEEEEecCCCCCCCCEEEEECCCccchH----HHHHHHH
Confidence 3465555 4778899999999998 5777766655422 23 4778888999999999987654322 3467788
Q ss_pred HHHhcCCCeEEEEee
Q 018472 171 ACRRASAKNITAVIP 185 (355)
Q Consensus 171 alr~~~a~~ItlViP 185 (355)
.+++.|+++|.++..
T Consensus 144 ~L~~~G~~~I~v~~l 158 (207)
T TIGR01091 144 LLKKRGAKKIKVLSI 158 (207)
T ss_pred HHHHcCCCEEEEEEE
Confidence 899999999987776
No 107
>PRK13811 orotate phosphoribosyltransferase; Provisional
Probab=86.72 E-value=4.9 Score=36.03 Aligned_cols=78 Identities=19% Similarity=0.224 Sum_probs=55.1
Q ss_pred CCCCHHHHHHHHHHhCCceeceeeeecCCCceEEEeccCcCCCcEEEEccCCCCchhHHHHHHHHHHHHHhcCCCeEEEE
Q 018472 104 GTANPALSQEIACYMGVELGKINIKRFADGEIYVQLQESVRGCDVYLVQPTCPPANENLMELLIMIDACRRASAKNITAV 183 (355)
Q Consensus 104 g~~~~~LA~~Ia~~Lg~~l~~~~~~~FpDGE~~v~i~~~VrG~dV~iiqs~~~p~nd~lmELll~idalr~~~a~~ItlV 183 (355)
....-.+|..+|..||.++.-+.-.+...|+..... ..++|++|+||......- . -+.-.++.+|++||+ +..+
T Consensus 64 ~~gGi~~A~~~a~~l~~p~~~~rK~~k~~g~~~~~~-g~~~g~~VlIVDDvi~TG-~---T~~~~~~~l~~~Ga~-v~~~ 137 (170)
T PRK13811 64 AVGGVPLAVAVSLAAGKPYAIIRKEAKDHGKAGLII-GDVKGKRVLLVEDVTTSG-G---SALYGIEQLRAAGAV-VDDV 137 (170)
T ss_pred CcCcHHHHHHHHHHHCCCEEEEecCCCCCCCcceEE-cccCCCEEEEEEeccccc-H---HHHHHHHHHHHCCCe-EEEE
Confidence 345679999999999999887776666678655444 468999999997654321 2 245677888999984 4444
Q ss_pred eeCc
Q 018472 184 IPYF 187 (355)
Q Consensus 184 iPY~ 187 (355)
+-.+
T Consensus 138 ~~~v 141 (170)
T PRK13811 138 VTVV 141 (170)
T ss_pred EEEE
Confidence 4444
No 108
>PRK07272 amidophosphoribosyltransferase; Provisional
Probab=86.43 E-value=2.5 Score=44.29 Aligned_cols=120 Identities=16% Similarity=0.179 Sum_probs=69.3
Q ss_pred CEEEEECCCCHHHHHHHHHHhCCceeceee------eec--CCC---ceEE--E---eccCcCCCcEEEEccCCCCchhH
Q 018472 98 RIKLFSGTANPALSQEIACYMGVELGKINI------KRF--ADG---EIYV--Q---LQESVRGCDVYLVQPTCPPANEN 161 (355)
Q Consensus 98 ~~~ifsg~~~~~LA~~Ia~~Lg~~l~~~~~------~~F--pDG---E~~v--~---i~~~VrG~dV~iiqs~~~p~nd~ 161 (355)
.+.|---++...+|..+|+.+|+++..--+ ++| +.. +..+ . +...++|++|+||...-.. -.
T Consensus 287 D~VvpVPnqa~~lA~~la~~lgip~~~~lvk~~~~~rt~~~~~q~~R~~~vr~~f~~~~~~~~gk~vllVDDvitt--G~ 364 (484)
T PRK07272 287 DIVIGVPNSSLSAASGYAEESGLPYEMGLVKNQYVARTFIQPTQELREQGVRMKLSAVSGVVKGKRVVMVDDSIVR--GT 364 (484)
T ss_pred CEEEEecHHHHHHHHHHHHHHCCCcccCeEEEccCCccccCCCHHHHHHHHhhCccccccccCCCEEEEEccccCc--hH
Confidence 344333355668999999999999743222 233 221 1111 1 2356789999998654221 11
Q ss_pred HHHHHHHHHHHHhcCCCeEEEEee--------CccccccccccCCCCcchHHHHHHHHHHhCCCEEEEccC
Q 018472 162 LMELLIMIDACRRASAKNITAVIP--------YFGYARADRKTQGRESIAAKLVANLITEAGADRVLACDL 224 (355)
Q Consensus 162 lmELll~idalr~~~a~~ItlViP--------Y~~YaRqDr~~~~ge~isak~vA~lL~~~G~d~VitvDl 224 (355)
. +--.++++|++||+.|.+.+- |++..++.|...-..-.+.+.+++ ..|+|.+.-+.+
T Consensus 365 T--~~~~~~~L~~~Ga~~v~~~~~~p~~~~~c~ygid~~~~~~lia~~~~~~ei~~---~~~~dsl~~~~~ 430 (484)
T PRK07272 365 T--SRRIVQLLKEAGAKEVHVAIASPELKYPCFYGIDIQTRRELISANHSVEEICD---IIGADSLTYLSV 430 (484)
T ss_pred H--HHHHHHHHHhcCCcEEEEEEeCCccccChhhhccCcCHHHHHhcCCCHHHHHH---HhCCCEEEEecH
Confidence 2 235778899999999998876 666666655421111122333333 346777665443
No 109
>PLN02238 hypoxanthine phosphoribosyltransferase
Probab=86.29 E-value=12 Score=34.14 Aligned_cols=83 Identities=16% Similarity=0.131 Sum_probs=57.9
Q ss_pred CEEEEECCCCHHHHHHHHHHhCC---ce--eceeeeecCC-----CceEEEe---ccCcCCCcEEEEccCCCCchhHHHH
Q 018472 98 RIKLFSGTANPALSQEIACYMGV---EL--GKINIKRFAD-----GEIYVQL---QESVRGCDVYLVQPTCPPANENLME 164 (355)
Q Consensus 98 ~~~ifsg~~~~~LA~~Ia~~Lg~---~l--~~~~~~~FpD-----GE~~v~i---~~~VrG~dV~iiqs~~~p~nd~lmE 164 (355)
.+.|=-....-.+|..++++|+. ++ .-+...++.+ |++.+.. ..+++|++|+||...... =--
T Consensus 37 ~vivgi~~Gg~~fa~~L~~~L~~~~~~~~i~fi~~~sy~~~~~~~g~~~i~~~~~~~~v~gk~VliVDDIidT----G~T 112 (189)
T PLN02238 37 PVVLGVATGAFMFLADLVRAIQPLPRGLTVDFIRASSYGGGTESSGVAKVSGADLKIDVKGKHVLLVEDIVDT----GNT 112 (189)
T ss_pred cEEEEEccCCHHHHHHHHHHhCccCCCeEEEEEEeeecCCCccccCceeEecCCCCCCCCCCEEEEEecccch----HHH
Confidence 34333356677899999999997 43 4566677755 4555554 357899999999776432 223
Q ss_pred HHHHHHHHHhcCCCeEEEEe
Q 018472 165 LLIMIDACRRASAKNITAVI 184 (355)
Q Consensus 165 Lll~idalr~~~a~~ItlVi 184 (355)
|..+++.+++.|+++|.++.
T Consensus 113 l~~~~~~l~~~g~~~v~~av 132 (189)
T PLN02238 113 LSALVAHLEAKGAASVSVCA 132 (189)
T ss_pred HHHHHHHHHhCCCCEEEEEE
Confidence 45666889999999998665
No 110
>PRK08525 amidophosphoribosyltransferase; Provisional
Probab=85.61 E-value=3.7 Score=42.47 Aligned_cols=84 Identities=11% Similarity=0.110 Sum_probs=51.3
Q ss_pred CEEEEECCCCHHHHHHHHHHhCCceeceeeee-c-------CC-------CceEEEe-ccCcCCCcEEEEccCCCCchhH
Q 018472 98 RIKLFSGTANPALSQEIACYMGVELGKINIKR-F-------AD-------GEIYVQL-QESVRGCDVYLVQPTCPPANEN 161 (355)
Q Consensus 98 ~~~ifsg~~~~~LA~~Ia~~Lg~~l~~~~~~~-F-------pD-------GE~~v~i-~~~VrG~dV~iiqs~~~p~nd~ 161 (355)
++.|..-.+...+|..+|+.||+++...-+++ + ++ +...+.. .+.+.||+|+||...-.- -.
T Consensus 277 d~Vv~vPd~g~~~A~~~A~~lgip~~~~l~rk~~~~r~~i~~~qr~rn~~~~~~~~~~~~~v~gK~VlLVDDvitT--G~ 354 (445)
T PRK08525 277 DFVVPVPDSGVPAAIGYAQESGIPFEMAIVRNHYVGRTFIEPTQEMRNLKVKLKLNPMSKVLEGKRIVVIDDSIVR--GT 354 (445)
T ss_pred CeEEECCchHHHHHHHHHHHhCCCccceEEEeeccccccCCHHHHHHhhheeEEecccccccCCCeEEEEecccCc--HH
Confidence 34333333456899999999999874222222 1 11 1122222 234889999999764322 12
Q ss_pred HHHHHHHHHHHHhcCCCeEEEEee
Q 018472 162 LMELLIMIDACRRASAKNITAVIP 185 (355)
Q Consensus 162 lmELll~idalr~~~a~~ItlViP 185 (355)
. |.-+++.||++||++|.+.+-
T Consensus 355 T--l~~a~~~Lr~aGA~~V~v~~~ 376 (445)
T PRK08525 355 T--SKKIVSLLRAAGAKEIHLRIA 376 (445)
T ss_pred H--HHHHHHHHHhcCCCEEEEEEE
Confidence 2 235778999999999998763
No 111
>TIGR01367 pyrE_Therm orotate phosphoribosyltransferase, Thermus family. This model represents a distinct clade of orotate phosphoribosyltransferases. Members include the experimentally determined example from Thermus aquaticus and additional examples from Caulobacter crescentus, Helicobacter pylori, Mesorhizobium loti, and related species.
Probab=84.70 E-value=13 Score=33.95 Aligned_cols=78 Identities=15% Similarity=0.088 Sum_probs=52.1
Q ss_pred CCEEEEECCCCHHHHHHHHHHhCCceeceeeeecCCCceEEEeccC-cCCCcEEEEccCCCCchhHHHHHHHHHHHHHhc
Q 018472 97 NRIKLFSGTANPALSQEIACYMGVELGKINIKRFADGEIYVQLQES-VRGCDVYLVQPTCPPANENLMELLIMIDACRRA 175 (355)
Q Consensus 97 ~~~~ifsg~~~~~LA~~Ia~~Lg~~l~~~~~~~FpDGE~~v~i~~~-VrG~dV~iiqs~~~p~nd~lmELll~idalr~~ 175 (355)
..+.+=...+.-.+|..+|..||+++... ++ ..|+..+..... .+|++|+||...-..- . -+..+++.+++.
T Consensus 59 ~d~Ivgi~~gGi~~A~~la~~L~~~~i~~--~k-~~~~~~~~~~~~l~~G~~VLIVDDIi~TG-~---Tl~~a~~~l~~~ 131 (187)
T TIGR01367 59 VDFIVGPAMGGVILGYEVARQLSVRSIFA--ER-EGGGMKLRRGFAVKPGEKFVAVEDVVTTG-G---SLLEAIRAIEGQ 131 (187)
T ss_pred CCEEEEEccCcHHHHHHHHHHhCCCeEEE--EE-eCCcEEEeecccCCCCCEEEEEEeeecch-H---HHHHHHHHHHHc
Confidence 34444345678899999999999986433 33 337766654433 4799999998764321 1 235556778999
Q ss_pred CCCeEE
Q 018472 176 SAKNIT 181 (355)
Q Consensus 176 ~a~~It 181 (355)
|++.+.
T Consensus 132 Ga~vv~ 137 (187)
T TIGR01367 132 GGQVVG 137 (187)
T ss_pred CCeEEE
Confidence 998664
No 112
>PRK09123 amidophosphoribosyltransferase; Provisional
Probab=83.95 E-value=8.4 Score=40.35 Aligned_cols=117 Identities=16% Similarity=0.132 Sum_probs=67.6
Q ss_pred CEEEEECCCCHHHHHHHHHHhCCceeceeee-ecC----------CCceEEEe-----ccCcCCCcEEEEccCCCCchhH
Q 018472 98 RIKLFSGTANPALSQEIACYMGVELGKINIK-RFA----------DGEIYVQL-----QESVRGCDVYLVQPTCPPANEN 161 (355)
Q Consensus 98 ~~~ifsg~~~~~LA~~Ia~~Lg~~l~~~~~~-~Fp----------DGE~~v~i-----~~~VrG~dV~iiqs~~~p~nd~ 161 (355)
.+.|---.+...+|..+++.+|+++...-++ ++- ..+..+++ .+.+.|++|+||......- .
T Consensus 297 D~Vv~VP~sg~~~A~~la~~lgip~~~~lir~~y~grt~i~~~q~~r~~~v~~k~~~~~~~~~gk~vvlvDD~i~tG-~- 374 (479)
T PRK09123 297 DVVVPVPDSGVPAAIGYAQESGIPFELGIIRNHYVGRTFIQPTQQIRNLGVKLKHNANRAVIEGKRVVLVDDSIVRG-T- 374 (479)
T ss_pred eEEEEcCccHHHHHHHHHHhcCCCeeheEEEEeecCccccccccccccccEEEEecccccccCCCEEEEEeceeCch-H-
Confidence 3444334556689999999999998632222 231 12223333 2347899999987653221 1
Q ss_pred HHHHHHHHHHHHhcCCCeEEEEe-----eCccccc---cccccCCCCcchHHHHHHHHHHhCCCEEEE
Q 018472 162 LMELLIMIDACRRASAKNITAVI-----PYFGYAR---ADRKTQGRESIAAKLVANLITEAGADRVLA 221 (355)
Q Consensus 162 lmELll~idalr~~~a~~ItlVi-----PY~~YaR---qDr~~~~ge~isak~vA~lL~~~G~d~Vit 221 (355)
-|.-+++.||++||++|.+.+ -|-.|.- .++...-+.-.+...+++. .|+|.+.-
T Consensus 375 --Tl~~~~~~l~~~Ga~~v~~~~~~p~~~~~~~~gid~~~~~~l~~~~~~~~ei~~~---igadsl~y 437 (479)
T PRK09123 375 --TSRKIVQMLRDAGAKEVHLRIASPPITHPCFYGIDTPERSKLLAATHSLEEMAEY---IGADSLAF 437 (479)
T ss_pred --HHHHHHHHHHHcCCCEEEEEEcCCCCccceeecCCCCCHHHHHHcCCCHHHHHHH---hCCCeEec
Confidence 235688899999999999888 3444444 3332110111234445544 46777764
No 113
>PRK00455 pyrE orotate phosphoribosyltransferase; Validated
Probab=83.22 E-value=9.8 Score=34.82 Aligned_cols=81 Identities=16% Similarity=0.134 Sum_probs=52.1
Q ss_pred CCEEEEECCCCHHHHHHHHHHhCCceeceeeeecCCCce-EEEeccCcCCCcEEEEccCCCCchhHHHHHHHHHHHHHhc
Q 018472 97 NRIKLFSGTANPALSQEIACYMGVELGKINIKRFADGEI-YVQLQESVRGCDVYLVQPTCPPANENLMELLIMIDACRRA 175 (355)
Q Consensus 97 ~~~~ifsg~~~~~LA~~Ia~~Lg~~l~~~~~~~FpDGE~-~v~i~~~VrG~dV~iiqs~~~p~nd~lmELll~idalr~~ 175 (355)
..+.+=.....-.+|..+|..||+++.-..-.....|+. .+. ...++|++|+||...-..- . -+.-+++.+++.
T Consensus 65 ~d~Ivgi~~gG~~~A~~la~~L~~~~~~~rk~~~~~g~~~~~~-~~~~~g~~VliVDDvi~tG-~---Tl~~~~~~l~~~ 139 (202)
T PRK00455 65 FDVVAGPATGGIPLAAAVARALDLPAIFVRKEAKDHGEGGQIE-GRRLFGKRVLVVEDVITTG-G---SVLEAVEAIRAA 139 (202)
T ss_pred CCEEEecccCcHHHHHHHHHHhCCCEEEEecccCCCCCCceEE-ccCCCCCEEEEEecccCCc-H---HHHHHHHHHHHc
Confidence 344443446788999999999999877554433333432 232 2346799999997764322 2 234557888899
Q ss_pred CCCeEEE
Q 018472 176 SAKNITA 182 (355)
Q Consensus 176 ~a~~Itl 182 (355)
|++.+.+
T Consensus 140 Ga~~v~~ 146 (202)
T PRK00455 140 GAEVVGV 146 (202)
T ss_pred CCEEEEE
Confidence 9876553
No 114
>PF00156 Pribosyltran: Phosphoribosyl transferase domain; InterPro: IPR000836 The name PRT comes from phosphoribosyltransferase (PRTase) enzymes, which carry out phosphoryl transfer reactions on 5-phosphoribosyl-alpha1-pyrophosphate PRPP, an activated form of ribose-5-phosphate. Members of Phosphoribosyltransferase (PRT) are catalytic and are regulatory proteins involved in nucleotide synthesis and salvage []. This includes a range of diverse phosphoribosyl transferase enzymes including adenine phosphoribosyltransferase (2.4.2.7 from EC); hypoxanthine-guanine-xanthine phosphoribosyltransferase; hypoxanthine phosphoribosyltransferase (2.4.2.8 from EC); ribose-phosphate pyrophosphokinase (2.7.6.1 from EC); amidophosphoribosyltransferase (2.4.2.14 from EC); orotate phosphoribosyltransferase (2.4.2.10 from EC);uracil phosphoribosyltransferase (2.4.2.9 from EC); and xanthine-guanine phosphoribosyltransferase (2.4.2.22 from EC). Not all PRT proteins are enzymes. For example, in some bacteria PRT proteins regulate the expression of purine and pyrimidine synthetic genes. Members of PRT are defined by the protein fold and by a short 13-residue sequence motif, The motif consists of four hydrophobic amino acids, two acidic amino acids and seven amino acids of variable character, usually including glycine and threonine. The motif has been predicted to be a PRPP-binding site in advance of structural information [, ]. Apart of this motif, different PRT proteins have a low level of sequence identity, less than 15%. The PRT sequence motif is only found in PRTases from the nucleotide synthesis and salvage pathways. Other PRTases, from the tryptophan, histidine and nicotinamide synthetic and salvage pathways, lack the PRT sequence motif and appear to be unrelated to each other and unrelated to the PRT family.; GO: 0009116 nucleoside metabolic process; PDB: 2JBH_A 1Y0B_D 2FXV_B 1GPH_1 1AO0_D 1ORO_B 1VCH_C 2WNS_A 2PRZ_B 2PS1_A ....
Probab=81.63 E-value=17 Score=29.59 Aligned_cols=85 Identities=16% Similarity=0.216 Sum_probs=56.3
Q ss_pred CCEEEEECCCCHHHHHHHHHHhCCceeceeeee------------cCCCceEEEeccCcCCCcEEEEccCCCCchhHHHH
Q 018472 97 NRIKLFSGTANPALSQEIACYMGVELGKINIKR------------FADGEIYVQLQESVRGCDVYLVQPTCPPANENLME 164 (355)
Q Consensus 97 ~~~~ifsg~~~~~LA~~Ia~~Lg~~l~~~~~~~------------FpDGE~~v~i~~~VrG~dV~iiqs~~~p~nd~lmE 164 (355)
....+=-..+.-.+|..+|..|+.++....... -.+.+......+.+.|++|+||......- . -
T Consensus 28 ~~~ivgi~~~G~~~a~~la~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~gk~vliVDDvi~tG-~---T 103 (125)
T PF00156_consen 28 FDVIVGIPRGGIPLAAALARALGIPLVFVRKRKSYYPGSDKTSREKNNQELFIIDKEDIKGKRVLIVDDVIDTG-G---T 103 (125)
T ss_dssp SSEEEEETTTTHHHHHHHHHHHTHEEEEEEEEEEEESEEEEEEEETEEEEEEEEESSSGTTSEEEEEEEEESSS-H---H
T ss_pred CCEEEeehhccHHHHHHHHHHhCCCccceeeeecccccchhhhhccCceEEeecccccccceeEEEEeeeEccc-H---H
Confidence 334333356778999999999999876554322 11123334445788999999997654332 2 2
Q ss_pred HHHHHHHHHhcCCCeEEEEee
Q 018472 165 LLIMIDACRRASAKNITAVIP 185 (355)
Q Consensus 165 Lll~idalr~~~a~~ItlViP 185 (355)
+.-+++.+++.|++.|.++..
T Consensus 104 l~~~~~~L~~~g~~~v~~~vl 124 (125)
T PF00156_consen 104 LKEAIELLKEAGAKVVGVAVL 124 (125)
T ss_dssp HHHHHHHHHHTTBSEEEEEEE
T ss_pred HHHHHHHHHhCCCcEEEEEEE
Confidence 356677889999998887653
No 115
>PRK05793 amidophosphoribosyltransferase; Provisional
Probab=81.47 E-value=8.1 Score=40.32 Aligned_cols=83 Identities=19% Similarity=0.210 Sum_probs=52.3
Q ss_pred CEEEEECCCCHHHHHHHHHHhCCceeceee-eec-------CCC---c--eEEEe---ccCcCCCcEEEEccCCCCchhH
Q 018472 98 RIKLFSGTANPALSQEIACYMGVELGKINI-KRF-------ADG---E--IYVQL---QESVRGCDVYLVQPTCPPANEN 161 (355)
Q Consensus 98 ~~~ifsg~~~~~LA~~Ia~~Lg~~l~~~~~-~~F-------pDG---E--~~v~i---~~~VrG~dV~iiqs~~~p~nd~ 161 (355)
.+.+-.-.+...+|..+|+.||+++...-+ .++ ++. + ..+++ ...++|++|+||...-.. -.
T Consensus 290 D~Vv~vPdsg~~~A~~~A~~lgip~~~~l~r~~~~~rtfi~~~q~~R~~~~~~k~~~~~~~v~gk~VlLVDD~ItT--Gt 367 (469)
T PRK05793 290 DIVIGVPDSGIPAAIGYAEASGIPYGIGFIKNKYVGRTFIAPSQELRERAVRVKLNPLKVNVEGKRVVLIDDSIVR--GT 367 (469)
T ss_pred CEEEEcCccHHHHHHHHHHHhCCCEeeeEEEeeeccccccChhHhhhhhhheEecccCccccCCCEEEEEccccCc--hH
Confidence 343333344578999999999999864222 111 111 1 12222 256789999998664322 12
Q ss_pred HHHHHHHHHHHHhcCCCeEEEEe
Q 018472 162 LMELLIMIDACRRASAKNITAVI 184 (355)
Q Consensus 162 lmELll~idalr~~~a~~ItlVi 184 (355)
. +.-++..||++||++|.+.+
T Consensus 368 T--l~~~~~~Lr~aGAk~V~~~~ 388 (469)
T PRK05793 368 T--SKRLVELLRKAGAKEVHFRV 388 (469)
T ss_pred H--HHHHHHHHHHcCCCEEEEEE
Confidence 2 23478899999999999876
No 116
>PRK13812 orotate phosphoribosyltransferase; Provisional
Probab=81.28 E-value=8.8 Score=34.67 Aligned_cols=74 Identities=14% Similarity=0.089 Sum_probs=51.2
Q ss_pred ECCCCHHHHHHHHHHhCCceeceeeeecCCCceEEEeccCc-CCCcEEEEccCCCCchhHHHHHHHHHHHHHhcCCCeEE
Q 018472 103 SGTANPALSQEIACYMGVELGKINIKRFADGEIYVQLQESV-RGCDVYLVQPTCPPANENLMELLIMIDACRRASAKNIT 181 (355)
Q Consensus 103 sg~~~~~LA~~Ia~~Lg~~l~~~~~~~FpDGE~~v~i~~~V-rG~dV~iiqs~~~p~nd~lmELll~idalr~~~a~~It 181 (355)
.....-.+|..+|.+||+++.-..-.+-..|+... +...+ +|++|+||...-..- . -+.-++++++++|++-+.
T Consensus 65 ~~~ggi~lA~~lA~~l~~p~~~~rk~~k~yg~~~~-~~g~~~~g~~VlIVDDvitTG-~---Tl~~~~~~l~~~Ga~vv~ 139 (176)
T PRK13812 65 VALGAVPLVAVTSVETGVPYVIARKQAKEYGTGNR-IEGRLDEGEEVVVLEDIATTG-Q---SAVDAVEALREAGATVNR 139 (176)
T ss_pred eecchHHHHHHHHHHHCCCEEEEeccCCcCCCCCe-EEecCCCcCEEEEEEEeeCCC-H---HHHHHHHHHHHCCCeEEE
Confidence 34557799999999999998866666656665433 23455 899999987653321 2 245667888899986443
No 117
>TIGR01090 apt adenine phosphoribosyltransferase. A phylogenetic analysis suggested omitting the bi-directional best hit homologs from the spirochetes from the seed for this model and making only tentative predictions of adenine phosphoribosyltransferase function for this lineage.
Probab=81.21 E-value=19 Score=31.95 Aligned_cols=75 Identities=12% Similarity=0.105 Sum_probs=48.2
Q ss_pred CCCHHHHHHHHHHhCCceeceeeeec------------CCCceEEEe--ccCcCCCcEEEEccCCCCchhHHHHHHHHHH
Q 018472 105 TANPALSQEIACYMGVELGKINIKRF------------ADGEIYVQL--QESVRGCDVYLVQPTCPPANENLMELLIMID 170 (355)
Q Consensus 105 ~~~~~LA~~Ia~~Lg~~l~~~~~~~F------------pDGE~~v~i--~~~VrG~dV~iiqs~~~p~nd~lmELll~id 170 (355)
...-.+|..+|+.||+++..+.-... .+|+-.+.+ ....+|++|+||....... . -+.-+++
T Consensus 55 ~~G~~~A~~la~~L~~~~~~i~k~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~gk~VLIVDDIitTG-~---Tl~~a~~ 130 (169)
T TIGR01090 55 ARGFIFGAALAYKLGVGFVPVRKPGKLPGETISASYDLEYGKDQLEIHKDAIKPGQRVLIVDDLLATG-G---TAEATDE 130 (169)
T ss_pred hccHHHHHHHHHHHCCCEEEEEeCCCCCCceeeeEEeeccCceEEEEehhhcCCcCEEEEEeccccch-H---HHHHHHH
Confidence 45569999999999998764433322 123222333 2345899999997764321 1 2456778
Q ss_pred HHHhcCCCeEEEE
Q 018472 171 ACRRASAKNITAV 183 (355)
Q Consensus 171 alr~~~a~~ItlV 183 (355)
.++++|++.+.++
T Consensus 131 ~L~~~Ga~~v~~~ 143 (169)
T TIGR01090 131 LIRKLGGEVVEAA 143 (169)
T ss_pred HHHHcCCEEEEEE
Confidence 8899999866543
No 118
>PRK08341 amidophosphoribosyltransferase; Provisional
Probab=80.56 E-value=7 Score=40.50 Aligned_cols=83 Identities=19% Similarity=0.190 Sum_probs=52.4
Q ss_pred CEEEEECCCCHHHHHHHHHHhCCceeceeeeecC---------CCceEEEe-----ccCcCCCcEEEEccCCCCchhHHH
Q 018472 98 RIKLFSGTANPALSQEIACYMGVELGKINIKRFA---------DGEIYVQL-----QESVRGCDVYLVQPTCPPANENLM 163 (355)
Q Consensus 98 ~~~ifsg~~~~~LA~~Ia~~Lg~~l~~~~~~~Fp---------DGE~~v~i-----~~~VrG~dV~iiqs~~~p~nd~lm 163 (355)
.+.+-.-.+...+|..+|+.+|++....-+++.. ..+..++. ...++|++|+||...-.. -..
T Consensus 273 D~Vv~VPdsg~~~A~~~a~~lgip~~~~l~k~r~~~rtfi~~~qr~~~~~~k~~~~~~~v~gk~VlLVDD~Itt--GtT- 349 (442)
T PRK08341 273 DVVIAVPDSGRTAALGFAHESGIPYMEGLIKNRYIGRTFIMPSGRELKVKLKLSPVREVINGKRVVLVDDSIVR--GTT- 349 (442)
T ss_pred ceEEEecCchHHHHHHHHHHhCCCchheEEEeccccccccCcCchhhhheeeecccccccCCCEEEEEeeeecc--HHH-
Confidence 4443333445589999999999998753333322 12222222 345789999998653221 122
Q ss_pred HHHHHHHHHHhcCCCeEEEEe
Q 018472 164 ELLIMIDACRRASAKNITAVI 184 (355)
Q Consensus 164 ELll~idalr~~~a~~ItlVi 184 (355)
|--++++||++||++|.+.+
T Consensus 350 -l~~~~~~L~~aGAk~V~~~~ 369 (442)
T PRK08341 350 -MKRIVKMLRDAGAREVHVRI 369 (442)
T ss_pred -HHHHHHHHHhcCCcEEEEEE
Confidence 34477899999999998876
No 119
>TIGR01134 purF amidophosphoribosyltransferase. Alternate name: glutamine phosphoribosylpyrophosphate (PRPP) amidotransferase.
Probab=80.01 E-value=11 Score=39.03 Aligned_cols=116 Identities=23% Similarity=0.308 Sum_probs=66.8
Q ss_pred CEEEEECCCCHHHHHHHHHHhCCceeceeeee------c--CCCc-----eEEEe---ccCcCCCcEEEEccCCCCchhH
Q 018472 98 RIKLFSGTANPALSQEIACYMGVELGKINIKR------F--ADGE-----IYVQL---QESVRGCDVYLVQPTCPPANEN 161 (355)
Q Consensus 98 ~~~ifsg~~~~~LA~~Ia~~Lg~~l~~~~~~~------F--pDGE-----~~v~i---~~~VrG~dV~iiqs~~~p~nd~ 161 (355)
.+.+---.+....|..+|+.+|+++...-+++ | |+.+ +..++ ...++|++|+||...-..- .
T Consensus 275 D~Vv~VP~sg~~~A~~la~~lgip~~~~l~r~~~~~r~~i~~~q~~R~~~v~~k~~~~~~~~~gk~v~lvDD~ittG--~ 352 (442)
T TIGR01134 275 DVVIPVPDSGRSAALGFAQASGIPYREGLIKNRYVGRTFIMPTQELRELSVRLKLNPIREVFRGKRVVLVDDSIVRG--T 352 (442)
T ss_pred EEEEEccCCHHHHHHHHHHHhCCCchHHeEEeccccccccCCCHHHHHHHHhhhcccccccCCCCEEEEEecccccc--H
Confidence 34333334456899999999999876432322 2 2221 11122 2457899999987643211 1
Q ss_pred HHHHHHHHHHHHhcCCCeEEEEee--------Cccc---cccccccCCCCcchHHHHHHHHHHhCCCEEEEcc
Q 018472 162 LMELLIMIDACRRASAKNITAVIP--------YFGY---ARADRKTQGRESIAAKLVANLITEAGADRVLACD 223 (355)
Q Consensus 162 lmELll~idalr~~~a~~ItlViP--------Y~~Y---aRqDr~~~~ge~isak~vA~lL~~~G~d~VitvD 223 (355)
-+--++..||++||+.|.+.+- ||+- +|++..... .+-..+++ ..|+|.+.-+.
T Consensus 353 --T~~~~~~~l~~~ga~~v~~~~~spp~~~pc~yg~d~~~~~el~~~~---~~~~~i~~---~~~~~~l~~~~ 417 (442)
T TIGR01134 353 --TSRQIVKMLRDAGAKEVHVRIASPPIRYPCYYGIDMPTREELIANG---RTVEEIAK---EIGADSLAYLS 417 (442)
T ss_pred --HHHHHHHHHHHcCCcEEEEEEccCCccCCcccccCCCCHHHHhhcC---CCHHHHHH---HhCCCEEEEec
Confidence 2345678899999999998876 6665 455443211 22333333 34667666533
No 120
>PTZ00271 hypoxanthine-guanine phosphoribosyltransferase; Provisional
Probab=79.83 E-value=19 Score=33.59 Aligned_cols=83 Identities=12% Similarity=0.271 Sum_probs=58.0
Q ss_pred CEEEEE-CCCCHHHHHHHHHHhC---C--ceeceeeeecCCC-----ceEEE--eccCcCCCcEEEEccCCCCchhHHHH
Q 018472 98 RIKLFS-GTANPALSQEIACYMG---V--ELGKINIKRFADG-----EIYVQ--LQESVRGCDVYLVQPTCPPANENLME 164 (355)
Q Consensus 98 ~~~ifs-g~~~~~LA~~Ia~~Lg---~--~l~~~~~~~FpDG-----E~~v~--i~~~VrG~dV~iiqs~~~p~nd~lmE 164 (355)
++.|++ .+..-.+|..|+++|+ + ++..+.+..|-|| ++.+. +..+++|++|+||...-.. =.-
T Consensus 58 ~~vivgVlkGg~~fa~dL~r~L~~~~~~~~vdfi~vssY~~~~~s~g~~~i~~~~~~~i~gk~VLIVDDIvDT----G~T 133 (211)
T PTZ00271 58 PLYLLCVLKGSFIFTADLARFLADEGVPVKVEFICASSYGTGVETSGQVRMLLDVRDSVENRHILIVEDIVDS----AIT 133 (211)
T ss_pred CeEEEEEcCCCHHHHHHHHHHhcccCCCeeEEEEEEEecCCCCcccCceEEecCCCCCCCCCEEEEEecccCC----HHH
Confidence 443333 5788899999999996 3 4777888888654 34443 3468999999999776432 223
Q ss_pred HHHHHHHHHhcCCCeEEEEe
Q 018472 165 LLIMIDACRRASAKNITAVI 184 (355)
Q Consensus 165 Lll~idalr~~~a~~ItlVi 184 (355)
|..+++.|++.++++|.+..
T Consensus 134 L~~v~~~l~~~~p~svk~av 153 (211)
T PTZ00271 134 LQYLMRFMLAKKPASLKTVV 153 (211)
T ss_pred HHHHHHHHHhcCCCEEEEEE
Confidence 56667788888998886544
No 121
>PF15610 PRTase_3: PRTase ComF-like
Probab=79.61 E-value=2.3 Score=41.25 Aligned_cols=35 Identities=23% Similarity=0.338 Sum_probs=32.3
Q ss_pred CCCCEEEEEeCcccchHHHHHHHHHHHHcCCCEEE
Q 018472 307 VKGKVAVMVDDMIDTAGTIAKGAALLHQEGAREVY 341 (355)
Q Consensus 307 VkGK~VLIVDDIIdTG~Tl~~aa~~Lk~~GA~~V~ 341 (355)
++||.||.+|||--||.+=..+.+.+++.|++...
T Consensus 136 l~gk~lIflDDIkITGshE~~V~~~~~~~~~~~~~ 170 (274)
T PF15610_consen 136 LSGKHLIFLDDIKITGSHEDKVRKILKEYGLENDF 170 (274)
T ss_pred hCCcEEEEeccEEecCcHHHHHHHHHHHcCccccE
Confidence 79999999999999999999999999999998633
No 122
>PRK05205 bifunctional pyrimidine regulatory protein PyrR uracil phosphoribosyltransferase; Provisional
Probab=79.52 E-value=22 Score=31.72 Aligned_cols=84 Identities=18% Similarity=0.238 Sum_probs=54.3
Q ss_pred CEEEEE-CCCCHHHHHHHHHHh----CC--ceeceeeeecCCCc-----e-E---EEeccCcCCCcEEEEccCCCCchhH
Q 018472 98 RIKLFS-GTANPALSQEIACYM----GV--ELGKINIKRFADGE-----I-Y---VQLQESVRGCDVYLVQPTCPPANEN 161 (355)
Q Consensus 98 ~~~ifs-g~~~~~LA~~Ia~~L----g~--~l~~~~~~~FpDGE-----~-~---v~i~~~VrG~dV~iiqs~~~p~nd~ 161 (355)
+..|++ ....-.+|..+++.| |+ ++..+.+..|-|+. . . ..+..++.|++|+||....... .
T Consensus 32 ~~viv~il~gG~~~a~~La~~L~~~~~~~~~~~~l~~~~y~~~~~~~~~~~~~~~~~l~~~v~gr~VLIVDDIidTG-~- 109 (176)
T PRK05205 32 NLVLVGIKTRGVWLAERLAERLEQLEGVDVPVGELDITLYRDDLTKKGLHPQVKPTDIPFDIEGKRVILVDDVLYTG-R- 109 (176)
T ss_pred CeEEEEEccCCHHHHHHHHHHHHHHcCCCCccceEEEEEeecCccccCcccccccccCCCCCCCCEEEEEecccCcH-H-
Confidence 344443 566789999999999 53 35666666666542 1 1 2344578999999997765432 1
Q ss_pred HHHHHHHHHHHHhcC-CCeEEEEee
Q 018472 162 LMELLIMIDACRRAS-AKNITAVIP 185 (355)
Q Consensus 162 lmELll~idalr~~~-a~~ItlViP 185 (355)
-|..+++.+++.| +++|.++.-
T Consensus 110 --Tl~~~~~~L~~~G~~~~v~~avL 132 (176)
T PRK05205 110 --TIRAALDALFDYGRPARVQLAVL 132 (176)
T ss_pred --HHHHHHHHHHhcCCCcEEEEEEE
Confidence 2455668888888 677765443
No 123
>PRK02277 orotate phosphoribosyltransferase-like protein; Provisional
Probab=78.85 E-value=21 Score=32.69 Aligned_cols=84 Identities=17% Similarity=0.186 Sum_probs=54.8
Q ss_pred CCEEEEECCCCHHHHHHHHHHhCCceeceeeeecCCCceE-----EEe-ccCcCCCcEEEEccCCCCchhHHHHHHHHHH
Q 018472 97 NRIKLFSGTANPALSQEIACYMGVELGKINIKRFADGEIY-----VQL-QESVRGCDVYLVQPTCPPANENLMELLIMID 170 (355)
Q Consensus 97 ~~~~ifsg~~~~~LA~~Ia~~Lg~~l~~~~~~~FpDGE~~-----v~i-~~~VrG~dV~iiqs~~~p~nd~lmELll~id 170 (355)
..+.+=...+.-.+|..+|..||.++....-.++..|+.. +.. -..++|++|+||...-..- ..+ .-.++
T Consensus 86 ~D~Ivgi~~gG~~~A~~lA~~L~~~~~~~~~~k~~~~~~~~~~~~~~~~~~~~~gk~VlIVDDVitTG-~Tl---~~ai~ 161 (200)
T PRK02277 86 VDVVVGIAKSGVPLATLVADELGKDLAIYHPKKWDHGEGEKKTGSFSRNFASVEGKRCVIVDDVITSG-TTM---KETIE 161 (200)
T ss_pred CCEEEeeccCCHHHHHHHHHHhCCCcEEEecccccccccccccceeccccccCCcCEEEEEeeccCch-HHH---HHHHH
Confidence 3454444466789999999999999876665555333211 111 1357899999997764321 223 45567
Q ss_pred HHHhcCCCeEEEEe
Q 018472 171 ACRRASAKNITAVI 184 (355)
Q Consensus 171 alr~~~a~~ItlVi 184 (355)
.++++|++.+.++.
T Consensus 162 ~l~~~Ga~~v~v~v 175 (200)
T PRK02277 162 YLKEHGGKPVAVVV 175 (200)
T ss_pred HHHHcCCEEEEEEE
Confidence 78899998776544
No 124
>PLN02293 adenine phosphoribosyltransferase
Probab=77.53 E-value=36 Score=31.09 Aligned_cols=81 Identities=15% Similarity=0.172 Sum_probs=51.1
Q ss_pred CEEEEECCCCHHHHHHHHHHhCCceeceeeeecCCCceE------------EEec-cCc-CCCcEEEEccCCCCchhHHH
Q 018472 98 RIKLFSGTANPALSQEIACYMGVELGKINIKRFADGEIY------------VQLQ-ESV-RGCDVYLVQPTCPPANENLM 163 (355)
Q Consensus 98 ~~~ifsg~~~~~LA~~Ia~~Lg~~l~~~~~~~FpDGE~~------------v~i~-~~V-rG~dV~iiqs~~~p~nd~lm 163 (355)
...+=.....-.||..+|..||.++.-+.-.+..+|+.. +.+. +.+ +|++|+||...-... .
T Consensus 64 d~Ivg~e~~Gi~lA~~lA~~Lg~p~v~~rK~~k~~~~~~~~~~~~~~g~~~l~l~~~~i~~G~rVlIVDDvitTG-~--- 139 (187)
T PLN02293 64 SVVAGIEARGFIFGPPIALAIGAKFVPLRKPGKLPGEVISEEYVLEYGTDCLEMHVGAVEPGERALVIDDLIATG-G--- 139 (187)
T ss_pred CEEEEeCCCchHHHHHHHHHHCCCEEEEEecCCCCCceEEEEEeccCCceEEEEEcCccCCCCEEEEEeccccch-H---
Confidence 343333456778999999999999775555444333322 2222 345 799999987754321 2
Q ss_pred HHHHHHHHHHhcCCCeEEE
Q 018472 164 ELLIMIDACRRASAKNITA 182 (355)
Q Consensus 164 ELll~idalr~~~a~~Itl 182 (355)
-+.-+++.++++|++.+.+
T Consensus 140 T~~~~~~~l~~~Ga~~v~~ 158 (187)
T PLN02293 140 TLCAAINLLERAGAEVVEC 158 (187)
T ss_pred HHHHHHHHHHHCCCEEEEE
Confidence 2355668899999975543
No 125
>TIGR00336 pyrE orotate phosphoribosyltransferase. The conserved Lys (K) residue at position 101 of the seed alignment has been proposed as the active site for the enzyme.
Probab=76.92 E-value=18 Score=32.36 Aligned_cols=78 Identities=14% Similarity=0.111 Sum_probs=49.3
Q ss_pred CCCHHHHHHHHHHhCCc-----eeceeeeecCCCceEEEeccCcCCCcEEEEccCCCCchhHHHHHHHHHHHHHhcCCCe
Q 018472 105 TANPALSQEIACYMGVE-----LGKINIKRFADGEIYVQLQESVRGCDVYLVQPTCPPANENLMELLIMIDACRRASAKN 179 (355)
Q Consensus 105 ~~~~~LA~~Ia~~Lg~~-----l~~~~~~~FpDGE~~v~i~~~VrG~dV~iiqs~~~p~nd~lmELll~idalr~~~a~~ 179 (355)
...-.+|..||..|+.+ +.-+.-.+...|+......+..+|+.|+||......- . -+.-.++.++++|++
T Consensus 63 ~gG~~~A~~la~~l~~~~~~~~~~~~rk~~k~~g~~~~~~g~~~~g~~VlIVDDvi~TG-~---Tl~~a~~~l~~~Ga~- 137 (173)
T TIGR00336 63 LGGIPIATAVSVKLAKPGGDIPLCFNRKEAKDHGEGGNIEGELLEGDKVVVVEDVITTG-T---SILEAVEIIQAAGGQ- 137 (173)
T ss_pred cChHHHHHHHHHHhcCcCCCceEEEEcCCcccCCCCCceecCCCCCCEEEEEeccccCh-H---HHHHHHHHHHHcCCe-
Confidence 45669999999999988 4433322224465443333445799999998764321 2 345667888999985
Q ss_pred EEEEeeCc
Q 018472 180 ITAVIPYF 187 (355)
Q Consensus 180 ItlViPY~ 187 (355)
+..++-.+
T Consensus 138 v~~~~vlv 145 (173)
T TIGR00336 138 VAGVIIAV 145 (173)
T ss_pred EEEEEEEE
Confidence 43444443
No 126
>PLN02501 digalactosyldiacylglycerol synthase
Probab=76.33 E-value=26 Score=38.79 Aligned_cols=171 Identities=13% Similarity=0.156 Sum_probs=88.5
Q ss_pred EEECCCCHHHHHHHHHHhCCceeceeeeecCCCceEEEeccCcCCCcEEEEccCCCC--chhHHHHHHHHHHHHHhcCCC
Q 018472 101 LFSGTANPALSQEIACYMGVELGKINIKRFADGEIYVQLQESVRGCDVYLVQPTCPP--ANENLMELLIMIDACRRASAK 178 (355)
Q Consensus 101 ifsg~~~~~LA~~Ia~~Lg~~l~~~~~~~FpDGE~~v~i~~~VrG~dV~iiqs~~~p--~nd~lmELll~idalr~~~a~ 178 (355)
+-.++++-+|--+||+.|...=...+=.-..|..-. .+. -.+++|.||.+.+-| .-..+..|+-.+.-++ .|-.
T Consensus 281 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~--~~~r~~~ivTtAslPWmTGtavnpL~rAayLa~-~~~~ 356 (794)
T PLN02501 281 LESDNHNDELDLRIASVLQSTGHCYDGGFWTDSSKH-ELS--DGKRHVAIVTTASLPWMTGTAVNPLFRAAYLAK-SAKQ 356 (794)
T ss_pred cccccccccchhhhhhhhhccCccccCCcccCcccc-ccc--cCCCeEEEEEcccCcccccccccHHHHHHHhcc-cCCc
Confidence 334556668888888887543222222222222211 222 226899999876544 1223334555555454 4678
Q ss_pred eEEEEeeCccccccccccCCCCcch-----HHHHHHHH-HHhCCCEEEEccCCchhhhcccCCccccccchHHHHHHHHh
Q 018472 179 NITAVIPYFGYARADRKTQGRESIA-----AKLVANLI-TEAGADRVLACDLHSGQSMGYFDIPVDHVYCQPVILDYLAS 252 (355)
Q Consensus 179 ~ItlViPY~~YaRqDr~~~~ge~is-----ak~vA~lL-~~~G~d~VitvDlHs~~~~~~F~ip~~~l~a~~~La~~L~~ 252 (355)
+||+|||+++-+-|....-....+. -..+-+.| +.+|+..-..+.. ..+-|.....-|.+...+.+.|.+
T Consensus 357 ~VtlviPWl~~~dq~~vy~~~~~F~~p~eQe~~ir~wl~~r~g~~~~~~i~f----Ypg~~~~~~~SI~p~gdI~~~L~~ 432 (794)
T PLN02501 357 NVTLLVPWLCKSDQELVYPNNLTFSSPEEQESYIRNWLEERIGFKADFKISF----YPGKFSKERRSIIPAGDTSQFIPS 432 (794)
T ss_pred eEEEEEecCCccccccccCCCcccCCHHHHHHHHHHHHHHhcCCCCCceEEe----ecchhccCCccccchHHHHHHhhc
Confidence 9999999999654433322122222 34567777 5567653222111 113333334455666777777765
Q ss_pred hcCCCCCeEEEecCCChhH-HHHHHHHHcC
Q 018472 253 KTVSSNDLVVVSPDVGGVA-RARAFAKKLS 281 (355)
Q Consensus 253 ~~~~~~~~vVVspd~Ggv~-rA~~lA~~L~ 281 (355)
. +.+-..+..|..=|.. -+...|++++
T Consensus 433 f--~PDVVHLatP~~LGw~~~Glr~ArKl~ 460 (794)
T PLN02501 433 K--DADIAILEEPEHLNWYHHGKRWTDKFN 460 (794)
T ss_pred c--CCCEEEECCchhhccHHHHHHHHHHcC
Confidence 3 1222334445544433 2566777775
No 127
>cd05014 SIS_Kpsf KpsF-like protein. KpsF is an arabinose-5-phosphate isomerase which contains SIS (Sugar ISomerase) domains. SIS domains are found in many phosphosugar isomerases and phosphosugar binding proteins. KpsF catalyzes the reversible reaction of ribulose 5-phosphate to arabinose 5-phosphate. This is the second step in the CMP-Kdo biosynthesis pathway.
Probab=74.37 E-value=17 Score=29.82 Aligned_cols=79 Identities=16% Similarity=0.129 Sum_probs=50.5
Q ss_pred CEEEEECCCCHHHHHHHHHHhCCceeceeeeecCCCceEEEeccCcCCCcEEEEccCCCCchhHHHHHHHHHHHHHhcCC
Q 018472 98 RIKLFSGTANPALSQEIACYMGVELGKINIKRFADGEIYVQLQESVRGCDVYLVQPTCPPANENLMELLIMIDACRRASA 177 (355)
Q Consensus 98 ~~~ifsg~~~~~LA~~Ia~~Lg~~l~~~~~~~FpDGE~~v~i~~~VrG~dV~iiqs~~~p~nd~lmELll~idalr~~~a 177 (355)
++.+++.-.+..+|+.++.+|.. ++... .-..|+|....-...++-+|++|+=|.+.. +. |++-++..+|+.|+
T Consensus 2 ~I~i~G~G~S~~~a~~~~~~l~~-~g~~~-~~~~~~~~~~~~~~~~~~~d~vi~iS~sG~-t~---~~~~~~~~a~~~g~ 75 (128)
T cd05014 2 KVVVTGVGKSGHIARKIAATLSS-TGTPA-FFLHPTEALHGDLGMVTPGDVVIAISNSGE-TD---ELLNLLPHLKRRGA 75 (128)
T ss_pred eEEEEeCcHhHHHHHHHHHHhhc-CCCce-EEcccchhhccccCcCCCCCEEEEEeCCCC-CH---HHHHHHHHHHHCCC
Confidence 46677766777889999888742 33222 334666654444445656788888776543 33 55666777899888
Q ss_pred CeEEE
Q 018472 178 KNITA 182 (355)
Q Consensus 178 ~~Itl 182 (355)
+-|.+
T Consensus 76 ~vi~i 80 (128)
T cd05014 76 PIIAI 80 (128)
T ss_pred eEEEE
Confidence 65543
No 128
>PRK12560 adenine phosphoribosyltransferase; Provisional
Probab=72.76 E-value=28 Score=31.72 Aligned_cols=81 Identities=12% Similarity=0.109 Sum_probs=50.6
Q ss_pred CCEEEEECCCCHHHHHHHHHHhCCceeceeeeecCCC------------ce--EEEeccCcCCCcEEEEccCCCCchhHH
Q 018472 97 NRIKLFSGTANPALSQEIACYMGVELGKINIKRFADG------------EI--YVQLQESVRGCDVYLVQPTCPPANENL 162 (355)
Q Consensus 97 ~~~~ifsg~~~~~LA~~Ia~~Lg~~l~~~~~~~FpDG------------E~--~v~i~~~VrG~dV~iiqs~~~p~nd~l 162 (355)
....+=.-...-.||..+|..+|+++..+...+++.. .+ .+.+....+|++|+||...-..- ..
T Consensus 52 ~D~Ivg~e~~Gi~lA~~vA~~l~~p~~~~rk~~~~~~~~~~~~~~~~~~~~eg~~~~~~~~~G~rVlIVDDvitTG-~T- 129 (187)
T PRK12560 52 IDKIVTEEDKGAPLATPVSLLSGKPLAMARWYPYSLSELNYNVVEIGSEYFEGVVYLNGIEKGDRVAIIDDTLSTG-GT- 129 (187)
T ss_pred CCEEEEEccccHHHHHHHHHhhCCCEEEeccCCCcccceeEEeeeeeccceeeeeEccCCCCcCEEEEEEeccccC-HH-
Confidence 3443333456779999999999999866554333322 11 13333355799999997654321 22
Q ss_pred HHHHHHHHHHHhcCCCeEE
Q 018472 163 MELLIMIDACRRASAKNIT 181 (355)
Q Consensus 163 mELll~idalr~~~a~~It 181 (355)
+.-+++.++++|+..+-
T Consensus 130 --~~~ai~ll~~aGa~vv~ 146 (187)
T PRK12560 130 --VIALIKAIENSGGIVSD 146 (187)
T ss_pred --HHHHHHHHHHCCCEEEE
Confidence 35667889999996544
No 129
>PRK07349 amidophosphoribosyltransferase; Provisional
Probab=72.16 E-value=15 Score=38.77 Aligned_cols=76 Identities=17% Similarity=0.184 Sum_probs=49.3
Q ss_pred CCCHHHHHHHHHHhCCceeceeeeecCCCc-------------eEEE---eccCcCCCcEEEEccCCCCchhHHHHHHHH
Q 018472 105 TANPALSQEIACYMGVELGKINIKRFADGE-------------IYVQ---LQESVRGCDVYLVQPTCPPANENLMELLIM 168 (355)
Q Consensus 105 ~~~~~LA~~Ia~~Lg~~l~~~~~~~FpDGE-------------~~v~---i~~~VrG~dV~iiqs~~~p~nd~lmELll~ 168 (355)
.+...+|..+|+.+|+++...-+++.--|. +..+ +.+.++|+.|+||......- . -+.-+
T Consensus 321 ~sg~~~A~g~A~~lgip~~~~L~r~~y~grtfi~p~q~~R~~~~~~kl~~~~~~~~gkrVlLVDDvIttG-t---Tl~~~ 396 (500)
T PRK07349 321 DSGIPAAIGFSQASGIPYAEGLIKNRYVGRTFIQPTQSMRESGIRMKLNPLKDVLAGKRIIIVDDSIVRG-T---TSRKI 396 (500)
T ss_pred cccHHHHHHHHHHHCCCchhceEEEeccCccccCCCHHHHHhhhheeeeccccccCCCEEEEEeceeCCc-H---HHHHH
Confidence 345589999999999998754444322221 1122 24566899999986542211 1 23456
Q ss_pred HHHHHhcCCCeEEEEe
Q 018472 169 IDACRRASAKNITAVI 184 (355)
Q Consensus 169 idalr~~~a~~ItlVi 184 (355)
+.+||++||+.|.+.+
T Consensus 397 ~~~Lr~aGAkeV~~~i 412 (500)
T PRK07349 397 VKALRDAGATEVHMRI 412 (500)
T ss_pred HHHHHHhCCeEEEEEe
Confidence 7889999999998775
No 130
>TIGR02990 ectoine_eutA ectoine utilization protein EutA. Members of this protein family are EutA, a predicted arylmalonate decarboxylase found in a conserved ectoine utilization operon of species that include Sinorhizobium meliloti 1021 (where it is known to be induced by ectoine), Mesorhizobium loti and Silicibacter pomeroyi. It is missing from two other species with the other ectoine transport and utilization genes: Pseudomonas putida and Agrobacterium tumefaciens.
Probab=71.83 E-value=39 Score=32.07 Aligned_cols=101 Identities=13% Similarity=0.187 Sum_probs=59.9
Q ss_pred HHHHHHHHhcCCCeEEEEeeCccccccccccCCCCcchHHHHHHHHHHhCCCEEEEccCCchhhhcccCCccccccchHH
Q 018472 166 LIMIDACRRASAKNITAVIPYFGYARADRKTQGRESIAAKLVANLITEAGADRVLACDLHSGQSMGYFDIPVDHVYCQPV 245 (355)
Q Consensus 166 ll~idalr~~~a~~ItlViPY~~YaRqDr~~~~ge~isak~vA~lL~~~G~d~VitvDlHs~~~~~~F~ip~~~l~a~~~ 245 (355)
.-+++||+..|++||-++-||.+. . ...+.+.|+..|++-+-..-+ + ...-+. +-.+. ...
T Consensus 109 ~A~~~AL~alg~~RIalvTPY~~~-v------------~~~~~~~l~~~G~eV~~~~~~--~-~~~~~~--ia~i~-p~~ 169 (239)
T TIGR02990 109 SAAVDGLAALGVRRISLLTPYTPE-T------------SRPMAQYFAVRGFEIVNFTCL--G-LTDDRE--MARIS-PDC 169 (239)
T ss_pred HHHHHHHHHcCCCEEEEECCCcHH-H------------HHHHHHHHHhCCcEEeeeecc--C-CCCCce--eeecC-HHH
Confidence 346789999999999999999853 1 345777888888654433111 0 000001 11222 233
Q ss_pred HHHHHHhhc-CCCCCeEEEecCCChhHHHHHHHHHcCCCCEE
Q 018472 246 ILDYLASKT-VSSNDLVVVSPDVGGVARARAFAKKLSDAPLA 286 (355)
Q Consensus 246 La~~L~~~~-~~~~~~vVVspd~Ggv~rA~~lA~~L~~~p~~ 286 (355)
+.+.+++.. .+-+-+++.|.....+.....+-+.|+ .|+.
T Consensus 170 i~~~~~~~~~~~aDAifisCTnLrt~~vi~~lE~~lG-kPVl 210 (239)
T TIGR02990 170 IVEAALAAFDPDADALFLSCTALRAATCAQRIEQAIG-KPVV 210 (239)
T ss_pred HHHHHHHhcCCCCCEEEEeCCCchhHHHHHHHHHHHC-CCEE
Confidence 444444321 123335677788888888888888886 6753
No 131
>COG0634 Hpt Hypoxanthine-guanine phosphoribosyltransferase [Nucleotide transport and metabolism]
Probab=70.55 E-value=45 Score=30.56 Aligned_cols=84 Identities=13% Similarity=0.239 Sum_probs=57.7
Q ss_pred CCEEEEE-CCCCHHHHHHHHHHhCCc--eeceeeeecCCC-----ceEEEe--ccCcCCCcEEEEccCCCCchhHHHHHH
Q 018472 97 NRIKLFS-GTANPALSQEIACYMGVE--LGKINIKRFADG-----EIYVQL--QESVRGCDVYLVQPTCPPANENLMELL 166 (355)
Q Consensus 97 ~~~~ifs-g~~~~~LA~~Ia~~Lg~~--l~~~~~~~FpDG-----E~~v~i--~~~VrG~dV~iiqs~~~p~nd~lmELl 166 (355)
+++.+++ ...+-.++..++++++++ +.-+.+..|-+| +.++.- .++++|+||.||...-..- .-|-
T Consensus 35 ~~~~vv~iLkGs~~F~~dL~r~i~~~~e~dFm~vSSYg~~t~ssg~v~i~kDld~di~grdVLiVeDIiDsG----~TLs 110 (178)
T COG0634 35 KDPLVVGVLKGSFPFMADLIRAIDFPLEVDFMHVSSYGGGTSSSGEVKILKDLDEDIKGRDVLIVEDIIDSG----LTLS 110 (178)
T ss_pred CceEEEEEcccchhhHHHHHHhcCCCceeEEEEEeccCCCcccCCceEEecccccCCCCCeEEEEecccccC----hhHH
Confidence 4444444 467778899999998754 567777777665 455544 4789999999997653221 1345
Q ss_pred HHHHHHHhcCCCeEEEEe
Q 018472 167 IMIDACRRASAKNITAVI 184 (355)
Q Consensus 167 l~idalr~~~a~~ItlVi 184 (355)
.+.+-|+..+|+++.++.
T Consensus 111 ~i~~~l~~r~a~sv~i~t 128 (178)
T COG0634 111 KVRDLLKERGAKSVRIAT 128 (178)
T ss_pred HHHHHHHhCCCCeEEEEE
Confidence 566777888999887653
No 132
>COG0034 PurF Glutamine phosphoribosylpyrophosphate amidotransferase [Nucleotide transport and metabolism]
Probab=69.97 E-value=15 Score=38.28 Aligned_cols=112 Identities=25% Similarity=0.299 Sum_probs=67.0
Q ss_pred EEEEECCCCHHHHHHHHHHhCCceeceeeeec--------CCC---ceEEEec-----cCcCCCcEEEEccCCCCchhHH
Q 018472 99 IKLFSGTANPALSQEIACYMGVELGKINIKRF--------ADG---EIYVQLQ-----ESVRGCDVYLVQPTCPPANENL 162 (355)
Q Consensus 99 ~~ifsg~~~~~LA~~Ia~~Lg~~l~~~~~~~F--------pDG---E~~v~i~-----~~VrG~dV~iiqs~~~p~nd~l 162 (355)
+.|=--.++..-|-..|+.+|+++..--++.= |.. |.-|++. +.++||.|++|.. .+
T Consensus 286 vVipVPDSg~~aAig~A~~sGiPy~~GliKNrYvgRTFI~P~q~~R~~~Vr~KLnpvr~~v~GKrVvlVDD-------SI 358 (470)
T COG0034 286 VVIPVPDSGRPAAIGYARASGIPYEEGLIKNRYVGRTFIMPTQELREKGVRLKLNPVREVVKGKRVVLVDD-------SI 358 (470)
T ss_pred EEEecCCCChHHHHHHHHHhCCchhhccccccccceeeeCCcHHHHHhhhhhhcCchHHHhCCCeEEEEcc-------cc
Confidence 43333456778999999999998765444432 332 3333332 5578999999853 22
Q ss_pred H---HHHHHHHHHHhcCCCeEEEEe-------e-CccccccccccCCCCcch----HHHHHHHHHHhCCCEEEEccC
Q 018472 163 M---ELLIMIDACRRASAKNITAVI-------P-YFGYARADRKTQGRESIA----AKLVANLITEAGADRVLACDL 224 (355)
Q Consensus 163 m---ELll~idalr~~~a~~ItlVi-------P-Y~~YaRqDr~~~~ge~is----ak~vA~lL~~~G~d~VitvDl 224 (355)
+ -.-.+++.+|++|||.|.+-+ | ||+---++|. |-|. .+.+++. .|+|.+.-.++
T Consensus 359 VRGTTsr~IV~mlReAGAkEVHvriasP~i~~Pc~YGID~pt~~----eLIA~~~~~eeI~~~---IgaDSL~yLsl 428 (470)
T COG0034 359 VRGTTSRRIVQMLREAGAKEVHVRIASPPIRYPCFYGIDMPTRE----ELIAANRTVEEIRKA---IGADSLAYLSL 428 (470)
T ss_pred ccCccHHHHHHHHHHhCCCEEEEEecCCCccCCCccccCCCCHH----HHhhCCCCHHHHHHH---hCCCceeeecH
Confidence 2 123456668999999999765 2 3444334442 2222 3344444 57888887664
No 133
>PRK09246 amidophosphoribosyltransferase; Provisional
Probab=69.44 E-value=19 Score=37.83 Aligned_cols=76 Identities=20% Similarity=0.221 Sum_probs=47.3
Q ss_pred CCCHHHHHHHHHHhCCceeceeeeecCCCc-------------eEEE---eccCcCCCcEEEEccCCCCchhHHHHHHHH
Q 018472 105 TANPALSQEIACYMGVELGKINIKRFADGE-------------IYVQ---LQESVRGCDVYLVQPTCPPANENLMELLIM 168 (355)
Q Consensus 105 ~~~~~LA~~Ia~~Lg~~l~~~~~~~FpDGE-------------~~v~---i~~~VrG~dV~iiqs~~~p~nd~lmELll~ 168 (355)
.+...+|..+|+.+|+++...-+++--.|- ++.+ +...++|++|+||......- .. |--+
T Consensus 302 ~s~~~~A~~la~~lgip~~~~l~k~~~~~rt~i~~~q~~R~~~vr~~f~~~~~~v~gK~VlLVDDvitTG--aT--l~~~ 377 (501)
T PRK09246 302 DTSRDAALEIARILGVPYREGFVKNRYVGRTFIMPGQAQRKKSVRQKLNAIRAEFKGKNVLLVDDSIVRG--TT--SEQI 377 (501)
T ss_pred ccHHHHHHHHHHHHCCCccceEEEEecccccccCcCHHHHHHHHHhhcCCccccccCCeEEEEecccccc--HH--HHHH
Confidence 345689999999999987643232211111 1111 13467899999986643221 12 2346
Q ss_pred HHHHHhcCCCeEEEEe
Q 018472 169 IDACRRASAKNITAVI 184 (355)
Q Consensus 169 idalr~~~a~~ItlVi 184 (355)
+.+||++||++|.+.+
T Consensus 378 ~~~L~~aGA~~V~v~v 393 (501)
T PRK09246 378 VQMAREAGAKKVYFAS 393 (501)
T ss_pred HHHHHHcCCCEEEEEE
Confidence 7889999999998764
No 134
>PRK14093 UDP-N-acetylmuramoylalanyl-D-glutamyl-2,6-diaminopimelate--D-alanyl-D-alanine ligase; Provisional
Probab=68.90 E-value=53 Score=34.02 Aligned_cols=107 Identities=18% Similarity=0.166 Sum_probs=62.2
Q ss_pred HHHHHHHHHhCCceecee--eeecC--CCce-EEEeccCcCCCcEEEEccCCCCchhHHHHHHHHHHHHHhc---CCCeE
Q 018472 109 ALSQEIACYMGVELGKIN--IKRFA--DGEI-YVQLQESVRGCDVYLVQPTCPPANENLMELLIMIDACRRA---SAKNI 180 (355)
Q Consensus 109 ~LA~~Ia~~Lg~~l~~~~--~~~Fp--DGE~-~v~i~~~VrG~dV~iiqs~~~p~nd~lmELll~idalr~~---~a~~I 180 (355)
-.|-.++..||+++..+. +.+|. .|=. .+++. +.+..+.||...+. .+--++--.++++++. ..+++
T Consensus 297 laAia~a~~lGi~~~~i~~~l~~~~~~~gR~~~~r~~--~~~~~~~iIDDsYa---hnP~s~~aaL~~l~~~~~~~~~r~ 371 (479)
T PRK14093 297 LAVLAAAELAGADLALAALALSQVQPAAGRGVRHTLE--VGGGEATLIDESYN---ANPASMAAALGVLGRAPVGPQGRR 371 (479)
T ss_pred HHHHHHHHHcCCCHHHHHHHHHhCCCcCCcceEEEee--cCCCCEEEEECCCC---CCHHHHHHHHHHHHhhhccCCCCE
Confidence 456777888999877665 66774 3421 12222 11334667764332 2233444555566654 23466
Q ss_pred EEEeeCc--cccccccccCCCCcchHHHHHHHHHHhCCCEEEEccCCchh
Q 018472 181 TAVIPYF--GYARADRKTQGRESIAAKLVANLITEAGADRVLACDLHSGQ 228 (355)
Q Consensus 181 tlViPY~--~YaRqDr~~~~ge~isak~vA~lL~~~G~d~VitvDlHs~~ 228 (355)
++|+.=| -|+|.++ .-+.+++.+...++|.|+.+..+...
T Consensus 372 i~V~G~m~elg~~~~~--------~h~~~~~~~~~~~~d~v~~~G~~~~~ 413 (479)
T PRK14093 372 IAVLGDMLELGPRGPE--------LHRGLAEAIRANAIDLVFCCGPLMRN 413 (479)
T ss_pred EEEECChHHcCcHHHH--------HHHHHHHHHHHcCCCEEEEEchhHHH
Confidence 6777543 3455332 13678888888899999999876543
No 135
>COG0856 Orotate phosphoribosyltransferase homologs [Nucleotide transport and metabolism]
Probab=68.68 E-value=42 Score=30.93 Aligned_cols=93 Identities=18% Similarity=0.286 Sum_probs=60.2
Q ss_pred hhhhhhcccCCCCEEEEEC--CCCHHHHHHHHHHhCCceeceeeeecCCCc-------eEEEeccCcCCCcEEEEccCCC
Q 018472 86 RMEKTVNRTTNNRIKLFSG--TANPALSQEIACYMGVELGKINIKRFADGE-------IYVQLQESVRGCDVYLVQPTCP 156 (355)
Q Consensus 86 ~~~~~~~~~~~~~~~ifsg--~~~~~LA~~Ia~~Lg~~l~~~~~~~FpDGE-------~~v~i~~~VrG~dV~iiqs~~~ 156 (355)
-+.|-.|+..+..+-++-| .+.-+||..+|..||.++.-..-+++-.-| +.=.+ .+|.||+++||...-.
T Consensus 74 am~Dm~m~~~~~evDvVvGIa~sGvPlAtmvA~elg~elaiY~PrK~~~de~~~~~G~iS~NF-a~V~gK~cvIVDDvit 152 (203)
T COG0856 74 AMADMIMEKVSFEVDVVVGIAISGVPLATMVAYELGKELAIYHPRKHRKDEGAGKGGSISSNF-ASVEGKRCVIVDDVIT 152 (203)
T ss_pred HHHHHHHHhccceeEEEEEEeecCccHHHHHHHHhCCceEEEecccccccccCCcCceeeccc-ccccCceEEEEecccc
Confidence 3444334444444433333 455689999999999999877766665432 22222 4789999999987543
Q ss_pred CchhHHHHHHHHHHHHHhcCCCeEEEE
Q 018472 157 PANENLMELLIMIDACRRASAKNITAV 183 (355)
Q Consensus 157 p~nd~lmELll~idalr~~~a~~ItlV 183 (355)
. -..++| .|+.+|+.|+|-+.++
T Consensus 153 t-G~Ti~E---~Ie~lke~g~kpv~v~ 175 (203)
T COG0856 153 T-GSTIKE---TIEQLKEEGGKPVLVV 175 (203)
T ss_pred c-ChhHHH---HHHHHHHcCCCcEEEE
Confidence 2 355766 4678899999755443
No 136
>PRK08558 adenine phosphoribosyltransferase; Provisional
Probab=68.14 E-value=45 Score=31.58 Aligned_cols=81 Identities=22% Similarity=0.279 Sum_probs=50.0
Q ss_pred CCEEEEECCCCHHHHHHHHHHhCCceeceeeeecC-------------CCc-eEEEec--cCcCCCcEEEEccCCCCchh
Q 018472 97 NRIKLFSGTANPALSQEIACYMGVELGKINIKRFA-------------DGE-IYVQLQ--ESVRGCDVYLVQPTCPPANE 160 (355)
Q Consensus 97 ~~~~ifsg~~~~~LA~~Ia~~Lg~~l~~~~~~~Fp-------------DGE-~~v~i~--~~VrG~dV~iiqs~~~p~nd 160 (355)
....+-.....-.||..+|..||+++.-+.-.+.+ .|. ....++ .-.+|++|+||..+-... .
T Consensus 112 ~D~Vvtv~~~GI~lA~~lA~~L~~p~vi~Rk~~~~~~~~~v~~y~s~s~~~~~~~~l~~~~l~~G~rVLIVDDvi~TG-~ 190 (238)
T PRK08558 112 VDVVLTAATDGIPLAVAIASYFGADLVYAKKSKETGVEKFYEEYQRLASGIEVTLYLPASALKKGDRVLIVDDIIRSG-E 190 (238)
T ss_pred CCEEEEECcccHHHHHHHHHHHCcCEEEEEecCCCCCcceEEEeeccCCCceeEEEecHHHcCCcCEEEEEecccccC-H
Confidence 35555556778899999999999997754332211 111 122222 225788999986653221 1
Q ss_pred HHHHHHHHHHHHHhcCCCeEE
Q 018472 161 NLMELLIMIDACRRASAKNIT 181 (355)
Q Consensus 161 ~lmELll~idalr~~~a~~It 181 (355)
-+.-+++.++++|++-+-
T Consensus 191 ---Tl~~~~~ll~~~ga~vvg 208 (238)
T PRK08558 191 ---TQRALLDLARQAGADVVG 208 (238)
T ss_pred ---HHHHHHHHHHHcCCEEEE
Confidence 246777888898986443
No 137
>PF01488 Shikimate_DH: Shikimate / quinate 5-dehydrogenase; InterPro: IPR006151 This entry represents a domain found in shikimate and quinate dehydrogenases, as well as glutamyl-tRNA reductases. Shikimate 5-dehydrogenase (1.1.1.25 from EC) catalyses the conversion of shikimate to 5-dehydroshikimate [, ]. This reaction is part of the shikimate pathway which is involved in the biosynthesis of aromatic amino acids []. Quinate 5-dehydrogenase catalyses the conversion of quinate to 5-dehydroquinate. This reaction is part of the quinate pathway where quinic acid is exploited as a source of carbon in prokaryotes and microbial eukaryotes. Both the shikimate and quinate pathways share two common pathway metabolites, 3-dehydroquinate and dehydroshikimate. Glutamyl-tRNA reductase (1.2.1.70 from EC) catalyzes the first step of tetrapyrrole biosynthesis in plants, archaea and most bacteria. The dimeric enzyme has an unusual V-shaped architecture where each monomer consists of three domains linked by a long 'spinal' alpha-helix. The central catalytic domain specifically recognises the glutamate moiety of the substrate []. ; PDB: 2EV9_B 2CY0_B 1WXD_A 2D5C_A 1NVT_B 2EGG_A 3PWZ_A 3DOO_A 3DON_A 3FBT_C ....
Probab=67.29 E-value=13 Score=31.67 Aligned_cols=37 Identities=32% Similarity=0.476 Sum_probs=32.6
Q ss_pred ecCCCCCEEEEEeCcccchHHHHHHHHHHHHcCCCEEEEEE
Q 018472 304 IGDVKGKVAVMVDDMIDTAGTIAKGAALLHQEGAREVYACC 344 (355)
Q Consensus 304 ~gdVkGK~VLIVDDIIdTG~Tl~~aa~~Lk~~GA~~V~v~~ 344 (355)
.++++|++++|+= +|++-..++..|.+.|+++|+++.
T Consensus 7 ~~~l~~~~vlviG----aGg~ar~v~~~L~~~g~~~i~i~n 43 (135)
T PF01488_consen 7 FGDLKGKRVLVIG----AGGAARAVAAALAALGAKEITIVN 43 (135)
T ss_dssp HSTGTTSEEEEES----SSHHHHHHHHHHHHTTSSEEEEEE
T ss_pred cCCcCCCEEEEEC----CHHHHHHHHHHHHHcCCCEEEEEE
Confidence 3578999999875 799999999999999999998864
No 138
>PF06574 FAD_syn: FAD synthetase; InterPro: IPR015864 Riboflavin is converted into catalytically active cofactors (FAD and FMN) by the actions of riboflavin kinase (2.7.1.26 from EC), which converts it into FMN, and FAD synthetase (2.7.7.2 from EC), which adenylates FMN to FAD. Eukaryotes usually have two separate enzymes, while most prokaryotes have a single bifunctional protein that can carry out both catalyses, although exceptions occur in both cases. While eukaryotic monofunctional riboflavin kinase is orthologous to the bifunctional prokaryotic enzyme [], the monofunctional FAD synthetase differs from its prokaryotic counterpart, and is instead related to the PAPS-reductase family []. The bacterial FAD synthetase that is part of the bifunctional enzyme has remote similarity to nucleotidyl transferases and, hence, it may be involved in the adenylylation reaction of FAD synthetases []. This entry represents prokaryotic-type FAD synthetase, which occurs primarily as part of a bifunctional enzyme.; GO: 0003919 FMN adenylyltransferase activity, 0009231 riboflavin biosynthetic process; PDB: 2X0K_B 3OP1_B 1T6Z_A 2I1L_A 1T6Y_B 1T6X_B 1S4M_A 1MRZ_A.
Probab=64.09 E-value=14 Score=32.73 Aligned_cols=77 Identities=19% Similarity=0.240 Sum_probs=46.0
Q ss_pred cchHHHHHHHHHHhCCCEEEEccCCchhhhcccCCccccccchHHHHHHHHhhcCCCCCeEEEecC-------CChhHHH
Q 018472 201 SIAAKLVANLITEAGADRVLACDLHSGQSMGYFDIPVDHVYCQPVILDYLASKTVSSNDLVVVSPD-------VGGVARA 273 (355)
Q Consensus 201 ~isak~vA~lL~~~G~d~VitvDlHs~~~~~~F~ip~~~l~a~~~La~~L~~~~~~~~~~vVVspd-------~Ggv~rA 273 (355)
-.+.+.=.++|+.+|+|.++.+| |+....++.+...+-+.|.+++ .-.-+|||.| .|.+...
T Consensus 61 l~s~~ek~~~l~~~Gvd~~~~~~---------F~~~~~~ls~~~Fi~~iL~~~l--~~~~ivvG~DfrFG~~~~G~~~~L 129 (157)
T PF06574_consen 61 LTSLEEKLELLESLGVDYVIVIP---------FTEEFANLSPEDFIEKILKEKL--NVKHIVVGEDFRFGKNRSGDVELL 129 (157)
T ss_dssp SS-HHHHHHHHHHTTESEEEEE----------CCCHHCCS-HHHHHHHHCCCHC--TEEEEEEETT-EESGGGEEEHHHH
T ss_pred CCCHHHHHHHHHHcCCCEEEEec---------chHHHHcCCHHHHHHHHHHhcC--CccEEEEccCccCCCCCCCCHHHH
Confidence 45677788999999999999987 3433445555444444454332 1234788888 6777776
Q ss_pred HHHHHHcCCCCEEEEE
Q 018472 274 RAFAKKLSDAPLAIVD 289 (355)
Q Consensus 274 ~~lA~~L~~~p~~~v~ 289 (355)
+.+++.++ ..+.++.
T Consensus 130 ~~~~~~~g-~~v~~v~ 144 (157)
T PF06574_consen 130 KELGKEYG-FEVEVVP 144 (157)
T ss_dssp HHCTTTT--SEEEEE-
T ss_pred HHhcccCc-eEEEEEC
Confidence 66666554 4444443
No 139
>COG0540 PyrB Aspartate carbamoyltransferase, catalytic chain [Nucleotide transport and metabolism]
Probab=63.59 E-value=64 Score=32.12 Aligned_cols=46 Identities=20% Similarity=0.324 Sum_probs=37.9
Q ss_pred eeecCCCCCEEEEEeCcccchHHHHHHHHHHHHcCCCEEEEEEEcccc
Q 018472 302 NLIGDVKGKVAVMVDDMIDTAGTIAKGAALLHQEGAREVYACCTHAVF 349 (355)
Q Consensus 302 ~l~gdVkGK~VLIVDDIIdTG~Tl~~aa~~Lk~~GA~~V~v~~tHglf 349 (355)
.-.|.++|.+|.||=|+- -|.|...-+++|+..| .+|++++.--+.
T Consensus 151 ~~~G~~~gl~iaivGDlk-hsRva~S~~~~L~~~g-a~v~lvsP~~L~ 196 (316)
T COG0540 151 EEFGRLDGLKIAIVGDLK-HSRVAHSNIQALKRFG-AEVYLVSPETLL 196 (316)
T ss_pred HHhCCcCCcEEEEEcccc-chHHHHHHHHHHHHcC-CEEEEECchHhC
Confidence 345789999999999986 6899999999999999 778877654443
No 140
>PTZ00149 hypoxanthine phosphoribosyltransferase; Provisional
Probab=63.39 E-value=88 Score=29.90 Aligned_cols=95 Identities=9% Similarity=0.220 Sum_probs=60.3
Q ss_pred hhhhhhccc-CCCCEEEEE-CCCCHHHHHHHHHHhCC-----------ce---eceeeeecCC----CceEEEec--cCc
Q 018472 86 RMEKTVNRT-TNNRIKLFS-GTANPALSQEIACYMGV-----------EL---GKINIKRFAD----GEIYVQLQ--ESV 143 (355)
Q Consensus 86 ~~~~~~~~~-~~~~~~ifs-g~~~~~LA~~Ia~~Lg~-----------~l---~~~~~~~FpD----GE~~v~i~--~~V 143 (355)
++..++.+. ..+++.|++ ....-.+|..|.++|+. +. .-+.+..|-| ||+.+.-. .++
T Consensus 69 ~LA~~I~~dy~~~~~vilgILkGg~~FaadL~~~L~~~~~~~~~~~~~~~~~~dfi~vsSY~~~~s~g~v~i~~~~~~~l 148 (241)
T PTZ00149 69 KLAYDIKQVYGNEELHILCILKGSRGFFSALVDYLNRIHNYSSTESPKPPYQEHYVRVKSYCNDESTGKLEIVSDDLSCL 148 (241)
T ss_pred HHHHHHHHHcCCCCeEEEEECCCCHHHHHHHHHHHhhhhhccccccCcccccccEEEEEEccCCCcCCceEEeccccccc
Confidence 444444433 234444444 56777899999988872 23 6677777754 56666432 468
Q ss_pred CCCcEEEEccCCCCchhHHHHHHHHHHHHHhcCCCeEEEEe
Q 018472 144 RGCDVYLVQPTCPPANENLMELLIMIDACRRASAKNITAVI 184 (355)
Q Consensus 144 rG~dV~iiqs~~~p~nd~lmELll~idalr~~~a~~ItlVi 184 (355)
.|++|+||...... =--|..+++.+++.|+++|.++.
T Consensus 149 ~gk~VLIVDDIidT----G~Tl~~~~~~L~~~g~~~V~va~ 185 (241)
T PTZ00149 149 KDKHVLIVEDIIDT----GNTLVKFCEYLKKFEPKTIRIAT 185 (241)
T ss_pred CCCEEEEEEeEeCh----HHHHHHHHHHHHhcCCCEEEEEE
Confidence 89999999776432 11234555778899999987655
No 141
>PRK03803 murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase; Provisional
Probab=63.29 E-value=35 Score=34.76 Aligned_cols=154 Identities=12% Similarity=0.131 Sum_probs=80.8
Q ss_pred CHHHHHHHHHHhCCceecee--eeecCCCceEEEeccCcCCCcEEEEccCCCCchhHHHHHHHHHHHHHhcCCCeEEEEe
Q 018472 107 NPALSQEIACYMGVELGKIN--IKRFADGEIYVQLQESVRGCDVYLVQPTCPPANENLMELLIMIDACRRASAKNITAVI 184 (355)
Q Consensus 107 ~~~LA~~Ia~~Lg~~l~~~~--~~~FpDGE~~v~i~~~VrG~dV~iiqs~~~p~nd~lmELll~idalr~~~a~~ItlVi 184 (355)
|-..|-.+|..||++...+. +..|.--+-+.++-....| +.+|... .+.| .-...-.++++++...+++++|+
T Consensus 277 NalaAia~a~~lgi~~~~i~~~L~~f~g~~~R~e~v~~~~g--v~~idDs-~atN--~~a~~~al~~l~~~~~~~iilI~ 351 (448)
T PRK03803 277 NALAALALGEAAGLPKEAMLEVLRTFTGLPHRCEWVREVAG--VDYYNDS-KGTN--VGATVAAIEGLGAHIQGKLVLIA 351 (448)
T ss_pred HHHHHHHHHHHcCCCHHHHHHHHhhCCCCCCceEEEEEeCC--eEEEEcC-CcCC--HHHHHHHHHhhhhcCCCCEEEEE
Confidence 33567778888898876554 5677655555554333333 3333322 2323 33334445555443224788887
Q ss_pred eCccccccccccCCCCcchHHHHHHHHHHhCCCEEEEccCCchhhhcccC--CccccccchHHHHHHHHhhcCCCCCeEE
Q 018472 185 PYFGYARADRKTQGRESIAAKLVANLITEAGADRVLACDLHSGQSMGYFD--IPVDHVYCQPVILDYLASKTVSSNDLVV 262 (355)
Q Consensus 185 PY~~YaRqDr~~~~ge~isak~vA~lL~~~G~d~VitvDlHs~~~~~~F~--ip~~~l~a~~~La~~L~~~~~~~~~~vV 262 (355)
.-+. + |.-++ .+.+.+... ++.|+.+..+...+...+. .++..........+++.+.. ...+.|+
T Consensus 352 Gg~~--k-~~d~~--------~l~~~l~~~-~~~vil~G~~~~~i~~~l~~~~~~~~~~~~~~a~~~a~~~a-~~gdvVL 418 (448)
T PRK03803 352 GGDG--K-GADFS--------PLREPVAKY-VRAVVLIGRDADKIAAALGGAVPLVRVATLAEAVAKAAELA-QAGDIVL 418 (448)
T ss_pred CCCC--C-CCCHH--------HHHHHHHhh-CCEEEEECCCHHHHHHHHhcCCCEEEeCCHHHHHHHHHHhC-CCCCEEE
Confidence 5431 1 22221 245555443 6888888777655543222 12211222233334443322 3457899
Q ss_pred EecCCChhHHHHHHHH
Q 018472 263 VSPDVGGVARARAFAK 278 (355)
Q Consensus 263 Vspd~Ggv~rA~~lA~ 278 (355)
++|..+++..-+.+.+
T Consensus 419 ~SPa~aSfd~f~~~~~ 434 (448)
T PRK03803 419 LSPACASLDMFKNFEA 434 (448)
T ss_pred eCchhhcccccCCHHH
Confidence 9999988876655554
No 142
>PRK11595 DNA utilization protein GntX; Provisional
Probab=62.72 E-value=23 Score=33.02 Aligned_cols=72 Identities=14% Similarity=0.202 Sum_probs=44.3
Q ss_pred HHHHHHHHHHhCCceeceeeeec---------------CCCceEEEeccCcCCCcEEEEccCCCCchhHHHHHHHHHHHH
Q 018472 108 PALSQEIACYMGVELGKINIKRF---------------ADGEIYVQLQESVRGCDVYLVQPTCPPANENLMELLIMIDAC 172 (355)
Q Consensus 108 ~~LA~~Ia~~Lg~~l~~~~~~~F---------------pDGE~~v~i~~~VrG~dV~iiqs~~~p~nd~lmELll~idal 172 (355)
..+|+.+++.+|+++..--+.+- .+-.-...+.+++.|++|+||.....-. . -+.-+++++
T Consensus 135 ~~la~~la~~~~~~~~~~~l~r~~~~~~q~~l~~~~R~~n~~~~f~~~~~~~~~~vllvDDv~tTG-~---Tl~~~~~~L 210 (227)
T PRK11595 135 DLLCRPLARWLGCDYDSEALTRTRATATQHFLSARLRKRNLKNAFRLELPVQGQHMAIVDDVVTTG-S---TVAEIAQLL 210 (227)
T ss_pred HHHHHHHHHHHCCCCcccceEEecCCCCcccCCHHHHhhhhhhhhccCCCCCCCEEEEEeeeecch-H---HHHHHHHHH
Confidence 37899999999987642212211 1111122334568899999987654321 1 235567888
Q ss_pred HhcCCCeEEEE
Q 018472 173 RRASAKNITAV 183 (355)
Q Consensus 173 r~~~a~~ItlV 183 (355)
+++|+++|.++
T Consensus 211 ~~~g~~~V~~~ 221 (227)
T PRK11595 211 LRNGAASVQVW 221 (227)
T ss_pred HHcCCcEEEEE
Confidence 99999988754
No 143
>COG2179 Predicted hydrolase of the HAD superfamily [General function prediction only]
Probab=62.63 E-value=87 Score=28.60 Aligned_cols=112 Identities=23% Similarity=0.350 Sum_probs=69.5
Q ss_pred HHHHHHhCCCEEEEccCCchhhhcccCCccccccchHHHHHHHHhhcCCCCCeEEEecCCChhHHHHHHHHHcCCCCEEE
Q 018472 208 ANLITEAGADRVLACDLHSGQSMGYFDIPVDHVYCQPVILDYLASKTVSSNDLVVVSPDVGGVARARAFAKKLSDAPLAI 287 (355)
Q Consensus 208 A~lL~~~G~d~VitvDlHs~~~~~~F~ip~~~l~a~~~La~~L~~~~~~~~~~vVVspd~Ggv~rA~~lA~~L~~~p~~~ 287 (355)
.+.|...|+.-|++ |+-.. =+|+++-++.|++-+|+.+--..+-..+|| .++.-.|+..++..|+ +++.+
T Consensus 20 ~~~L~~~Gikgvi~-DlDNT------Lv~wd~~~~tpe~~~W~~e~k~~gi~v~vv--SNn~e~RV~~~~~~l~-v~fi~ 89 (175)
T COG2179 20 PDILKAHGIKGVIL-DLDNT------LVPWDNPDATPELRAWLAELKEAGIKVVVV--SNNKESRVARAAEKLG-VPFIY 89 (175)
T ss_pred HHHHHHcCCcEEEE-eccCc------eecccCCCCCHHHHHHHHHHHhcCCEEEEE--eCCCHHHHHhhhhhcC-Cceee
Confidence 45677788877775 44111 067888899999999987632112223444 4578889999999997 77665
Q ss_pred EEEeecC-------------CCeeEEE------e-eecCCCCCEEEEEeCcccchHHHHHHH
Q 018472 288 VDKRRHG-------------HNVAEVM------N-LIGDVKGKVAVMVDDMIDTAGTIAKGA 329 (355)
Q Consensus 288 v~K~R~~-------------~~~~e~~------~-l~gdVkGK~VLIVDDIIdTG~Tl~~aa 329 (355)
--++-.+ .+.+.+. + +-|.-.|-++|+|.-++++.+-.....
T Consensus 90 ~A~KP~~~~fr~Al~~m~l~~~~vvmVGDqL~TDVlggnr~G~~tIlV~Pl~~~d~~~t~~n 151 (175)
T COG2179 90 RAKKPFGRAFRRALKEMNLPPEEVVMVGDQLFTDVLGGNRAGMRTILVEPLVAPDGWITKIN 151 (175)
T ss_pred cccCccHHHHHHHHHHcCCChhHEEEEcchhhhhhhcccccCcEEEEEEEeccccchhhhhh
Confidence 4332210 1111111 1 123456889999999999998544443
No 144
>PRK13809 orotate phosphoribosyltransferase; Provisional
Probab=61.73 E-value=30 Score=32.17 Aligned_cols=72 Identities=6% Similarity=-0.011 Sum_probs=47.0
Q ss_pred CCCHHHHHHHHHHhCCceeceeeeecCCCce-EEEeccC-cCCCcEEEEccCCCCchhHHHHHHHHHHHHHhcCCCeE
Q 018472 105 TANPALSQEIACYMGVELGKINIKRFADGEI-YVQLQES-VRGCDVYLVQPTCPPANENLMELLIMIDACRRASAKNI 180 (355)
Q Consensus 105 ~~~~~LA~~Ia~~Lg~~l~~~~~~~FpDGE~-~v~i~~~-VrG~dV~iiqs~~~p~nd~lmELll~idalr~~~a~~I 180 (355)
...-.+|..+|..+|+++....-..--.|+. .+++.+. .+|++|+||...-..- .. +.-.+++++++|++-+
T Consensus 76 ~~Gi~~A~~vA~~l~~p~~~~RK~~K~~G~~~~~~~~g~~~~g~~VlIVDDViTTG-~T---i~~a~~~L~~~G~~vv 149 (206)
T PRK13809 76 YTALTLATSISLKYNIPMVLRRKELKNVDPSDAIKVEGLFTPGQTCLVINDMVSSG-KS---IIETAVALEEEGLVVR 149 (206)
T ss_pred CccHHHHHHHHHHhCCCEEEEeCCCCCCCCcCEEEEccccCCCCEEEEEEeccccC-HH---HHHHHHHHHHCCCEEE
Confidence 3466999999999999988665433334543 3444433 4789999987643221 22 3556778888998633
No 145
>PRK06781 amidophosphoribosyltransferase; Provisional
Probab=61.70 E-value=26 Score=36.66 Aligned_cols=76 Identities=16% Similarity=0.164 Sum_probs=47.3
Q ss_pred CCCHHHHHHHHHHhCCceeceeeee-c-----C--CC---c----eEEE-eccCcCCCcEEEEccCCCCchhHHHHHHHH
Q 018472 105 TANPALSQEIACYMGVELGKINIKR-F-----A--DG---E----IYVQ-LQESVRGCDVYLVQPTCPPANENLMELLIM 168 (355)
Q Consensus 105 ~~~~~LA~~Ia~~Lg~~l~~~~~~~-F-----p--DG---E----~~v~-i~~~VrG~dV~iiqs~~~p~nd~lmELll~ 168 (355)
.+...+|..+|+.+|+++...-+++ + . +. + .... +.+.++|+.|++|....-.- .. |--+
T Consensus 292 ~s~~~~A~~~a~~~gip~~~~lik~~~~~rt~~~~~~~~R~~~v~~~f~~~~~~i~gk~VlLVDDvittG--tT--l~~~ 367 (471)
T PRK06781 292 DSSISAAIGYAEATGIPYELGLIKNRYVGRTFIQPSQELREQGVKMKLSAVRGVVEGKRVVMIDDSIVRG--TT--SKRI 367 (471)
T ss_pred hhHHHHHHHHHHHhCCCcccceEEEccCCCCCcCCCHHHHHHHHhcceeccccccCCceEEEEeceeccc--hH--HHHH
Confidence 3456889999999999876533322 2 1 21 1 1122 13557789999886532111 12 2346
Q ss_pred HHHHHhcCCCeEEEEe
Q 018472 169 IDACRRASAKNITAVI 184 (355)
Q Consensus 169 idalr~~~a~~ItlVi 184 (355)
+.+||++||++|.+.+
T Consensus 368 ~~~Lk~aGA~eV~v~i 383 (471)
T PRK06781 368 VRMLREAGATEVHVRI 383 (471)
T ss_pred HHHHHHcCCcEEEEEE
Confidence 7889999999999876
No 146
>PF01012 ETF: Electron transfer flavoprotein domain; InterPro: IPR014730 Electron transfer flavoproteins (ETFs) serve as specific electron acceptors for primary dehydrogenases, transferring the electrons to terminal respiratory systems. They can be functionally classified into constitutive, "housekeeping" ETFs, mainly involved in the oxidation of fatty acids (Group I), and ETFs produced by some prokaryotes under specific growth conditions, receiving electrons only from the oxidation of specific substrates (Group II) []. ETFs are heterodimeric proteins composed of an alpha and beta subunit, and contain an FAD cofactor and AMP [, , , , ]. ETF consists of three domains: domains I and II are formed by the N- and C-terminal portions of the alpha subunit, respectively, while domain III is formed by the beta subunit. Domains I and III share an almost identical alpha-beta-alpha sandwich fold, while domain II forms an alpha-beta-alpha sandwich similar to that of bacterial flavodoxins. FAD is bound in a cleft between domains II and III, while domain III binds the AMP molecule. Interactions between domains I and III stabilise the protein, forming a shallow bowl where domain II resides. This entry represents the N-terminal domain of both the alpha and beta subunits from Group I and Group II ETFs.; PDB: 1EFP_B 3FET_B 3IH5_B 2A1T_S 1EFV_B 1T9G_S 2A1U_B 1O96_E 1O94_C 3CLU_C ....
Probab=61.37 E-value=76 Score=27.52 Aligned_cols=105 Identities=25% Similarity=0.285 Sum_probs=67.3
Q ss_pred chhHHHHHHHHHHHHHhcCCCeEEEEeeCccccccccccCCCCcchHHHHHHHHHHhCCCEEEEccCCchhhhcccCCcc
Q 018472 158 ANENLMELLIMIDACRRASAKNITAVIPYFGYARADRKTQGRESIAAKLVANLITEAGADRVLACDLHSGQSMGYFDIPV 237 (355)
Q Consensus 158 ~nd~lmELll~idalr~~~a~~ItlViPY~~YaRqDr~~~~ge~isak~vA~lL~~~G~d~VitvDlHs~~~~~~F~ip~ 237 (355)
.++.-.|++-....+++..-..+++++ ++ ...=....+.+.|...|+|+|+.++- +.... |+
T Consensus 13 l~~~~~e~l~~A~~La~~~g~~v~av~--~G----------~~~~~~~~l~~~l~~~G~d~v~~~~~--~~~~~-~~--- 74 (164)
T PF01012_consen 13 LNPVSLEALEAARRLAEALGGEVTAVV--LG----------PAEEAAEALRKALAKYGADKVYHIDD--PALAE-YD--- 74 (164)
T ss_dssp E-HHHHHHHHHHHHHHHCTTSEEEEEE--EE----------TCCCHHHHHHHHHHSTTESEEEEEE---GGGTT-C----
T ss_pred cCHHHHHHHHHHHHHHhhcCCeEEEEE--Ee----------cchhhHHHHhhhhhhcCCcEEEEecC--ccccc-cC---
Confidence 466677888888888876555888776 22 11223566777788789999999872 11111 11
Q ss_pred ccccchHHHHHHHHhhcCCCCCeEEEecCCChhHHHHHHHHHcCCCCE
Q 018472 238 DHVYCQPVILDYLASKTVSSNDLVVVSPDVGGVARARAFAKKLSDAPL 285 (355)
Q Consensus 238 ~~l~a~~~La~~L~~~~~~~~~~vVVspd~Ggv~rA~~lA~~L~~~p~ 285 (355)
.......|++.+++. ..+.++++-...|...+..+|.+|+ .++
T Consensus 75 -~~~~a~~l~~~~~~~---~~~lVl~~~t~~g~~la~~lA~~L~-~~~ 117 (164)
T PF01012_consen 75 -PEAYADALAELIKEE---GPDLVLFGSTSFGRDLAPRLAARLG-APL 117 (164)
T ss_dssp -HHHHHHHHHHHHHHH---T-SEEEEESSHHHHHHHHHHHHHHT--EE
T ss_pred -HHHHHHHHHHHHHhc---CCCEEEEcCcCCCCcHHHHHHHHhC-CCc
Confidence 111245566666653 3457888888888889999999997 665
No 147
>PRK13810 orotate phosphoribosyltransferase; Provisional
Probab=60.66 E-value=34 Score=31.26 Aligned_cols=79 Identities=14% Similarity=0.082 Sum_probs=49.2
Q ss_pred CCCHHHHHHHHHHhCCceeceeeeecCCCceEEEeccCcCCCcEEEEccCCCCchhHHHHHHHHHHHHHhcCCCeEEEEe
Q 018472 105 TANPALSQEIACYMGVELGKINIKRFADGEIYVQLQESVRGCDVYLVQPTCPPANENLMELLIMIDACRRASAKNITAVI 184 (355)
Q Consensus 105 ~~~~~LA~~Ia~~Lg~~l~~~~~~~FpDGE~~v~i~~~VrG~dV~iiqs~~~p~nd~lmELll~idalr~~~a~~ItlVi 184 (355)
...-.||..+|..||+++.-+.-..=.-|+-......-.+|++|+||...-..- . -++-+++.+|++|+ .|..++
T Consensus 82 ~~GiplA~~vA~~l~~p~v~vRK~~k~~g~~~~~~g~~~~g~rVlIVDDVitTG-g---S~~~~i~~l~~~Ga-~V~~v~ 156 (187)
T PRK13810 82 LGGVPLATAVSLETGLPLLIVRKSVKDYGTGSRFVGDLKPEDRIVMLEDVTTSG-G---SVREAIEVVREAGA-YIKYVI 156 (187)
T ss_pred cchHHHHHHHHHHhCCCEEEEecCCCccCCCceEEccCCCcCEEEEEEeccCCC-h---HHHHHHHHHHHCCC-EEEEEE
Confidence 446689999999999987755443223344333222234789999987653221 2 23556788888888 555555
Q ss_pred eCcc
Q 018472 185 PYFG 188 (355)
Q Consensus 185 PY~~ 188 (355)
-.+-
T Consensus 157 vlvd 160 (187)
T PRK13810 157 TVVD 160 (187)
T ss_pred EEEE
Confidence 5543
No 148
>PF06300 Tsp45I: Tsp45I type II restriction enzyme; InterPro: IPR010443 There are four classes of restriction endonucleases: types I, II,III and IV. All types of enzymes recognise specific short DNA sequences and carry out the endonucleolytic cleavage of DNA to give specific double-stranded fragments with terminal 5'-phosphates. They differ in their recognition sequence, subunit composition, cleavage position, and cofactor requirements [, ], as summarised below: Type I enzymes (3.1.21.3 from EC) cleave at sites remote from recognition site; require both ATP and S-adenosyl-L-methionine to function; multifunctional protein with both restriction and methylase (2.1.1.72 from EC) activities. Type II enzymes (3.1.21.4 from EC) cleave within or at short specific distances from recognition site; most require magnesium; single function (restriction) enzymes independent of methylase. Type III enzymes (3.1.21.5 from EC) cleave at sites a short distance from recognition site; require ATP (but doesn't hydrolyse it); S-adenosyl-L-methionine stimulates reaction but is not required; exists as part of a complex with a modification methylase methylase (2.1.1.72 from EC). Type IV enzymes target methylated DNA. Type II restriction endonucleases (3.1.21.4 from EC) are components of prokaryotic DNA restriction-modification mechanisms that protect the organism against invading foreign DNA. These site-specific deoxyribonucleases catalyse the endonucleolytic cleavage of DNA to give specific double-stranded fragments with terminal 5'-phosphates. Of the 3000 restriction endonucleases that have been characterised, most are homodimeric or tetrameric enzymes that cleave target DNA at sequence-specific sites close to the recognition site. For homodimeric enzymes, the recognition site is usually a palindromic sequence 4-8 bp in length. Most enzymes require magnesium ions as a cofactor for catalysis. Although they can vary in their mode of recognition, many restriction endonucleases share a similar structural core comprising four beta-strands and one alpha-helix, as well as a similar mechanism of cleavage, suggesting a common ancestral origin []. However, there is still considerable diversity amongst restriction endonucleases [, ]. The target site recognition process triggers large conformational changes of the enzyme and the target DNA, leading to the activation of the catalytic centres. Like other DNA binding proteins, restriction enzymes are capable of non-specific DNA binding as well, which is the prerequisite for efficient target site location by facilitated diffusion. Non-specific binding usually does not involve interactions with the bases but only with the DNA backbone []. This entry represents type II restriction endonucleases such as Tsp45I, which recognises the DNA sequence 5' GTSAC, cleaving prior to G-1 [].
Probab=60.21 E-value=25 Score=33.55 Aligned_cols=55 Identities=18% Similarity=0.348 Sum_probs=42.3
Q ss_pred chhHHHHHHHHHHHHHhcCCCeEEEEeeCccccccccccCCCCcchHHHHHHHHHHhCCCEEE
Q 018472 158 ANENLMELLIMIDACRRASAKNITAVIPYFGYARADRKTQGRESIAAKLVANLITEAGADRVL 220 (355)
Q Consensus 158 ~nd~lmELll~idalr~~~a~~ItlViPY~~YaRqDr~~~~ge~isak~vA~lL~~~G~d~Vi 220 (355)
.+-+|+|.||-.+ ..-.==||+||-|.|+..-++.|-+.+.++..|.++|.|.|+
T Consensus 52 d~~~li~~lL~~~--------lfPikdsYvayLkrdksAlernP~Ti~ri~g~l~emGl~~i~ 106 (261)
T PF06300_consen 52 DSTKLIKSLLNLD--------LFPIKDSYVAYLKRDKSALERNPETINRICGRLYEMGLDKIY 106 (261)
T ss_pred chHHHHHHHHhcc--------cCccCcchHHHHHhhHHHHhcCcHHHHHHHHHHHHHhHHHHH
Confidence 3456777666522 111224899999999988889999999999999999988876
No 149
>PF01972 SDH_sah: Serine dehydrogenase proteinase; InterPro: IPR002825 This family of archaebacterial proteins, formerly known as DUF114, has been found to be a serine dehydrogenase proteinase distantly related to ClpP proteinases that belong to the serine proteinase superfamily. The family belong to MEROPS peptidase family S49; they are mostly unassigned peptidases but include the archaean signal peptide peptidase 1 []. The family has a catalytic triad of Ser, Asp, His residues, which shows an altered residue ordering compared with the ClpP proteinases but similar to that of the carboxypeptidase clan []. ; GO: 0016021 integral to membrane
Probab=59.46 E-value=79 Score=31.05 Aligned_cols=76 Identities=17% Similarity=0.298 Sum_probs=45.0
Q ss_pred HHHHHHHHHHhCCCEEEEccCCchhhhcccCCccccc---cchHHHHHHHHhhcCCCCCeEEEecCCChhHHHHHHHHHc
Q 018472 204 AKLVANLITEAGADRVLACDLHSGQSMGYFDIPVDHV---YCQPVILDYLASKTVSSNDLVVVSPDVGGVARARAFAKKL 280 (355)
Q Consensus 204 ak~vA~lL~~~G~d~VitvDlHs~~~~~~F~ip~~~l---~a~~~La~~L~~~~~~~~~~vVVspd~Ggv~rA~~lA~~L 280 (355)
.+++.++=++.| .+||++ +|..+..++|.+|+... .-.+.+.+.|++...+..-.+++-..-|-+.-|..+++.+
T Consensus 37 ~~~i~~ie~kr~-srvI~~-Ihrqe~~~~~giPi~~~I~i~dse~v~raI~~~~~~~~IdLii~TpGG~v~AA~~I~~~l 114 (285)
T PF01972_consen 37 LRLIREIEEKRG-SRVITL-IHRQERVSFLGIPIYRYIDIDDSEFVLRAIREAPKDKPIDLIIHTPGGLVDAAEQIARAL 114 (285)
T ss_pred HHHHHHHHHHhC-CEEEEE-EEeccccceeccccceeEcHhhHHHHHHHHHhcCCCCceEEEEECCCCcHHHHHHHHHHH
Confidence 445555555544 788876 68766667877775432 3345666777653212222355555566666677777776
Q ss_pred C
Q 018472 281 S 281 (355)
Q Consensus 281 ~ 281 (355)
.
T Consensus 115 ~ 115 (285)
T PF01972_consen 115 R 115 (285)
T ss_pred H
Confidence 4
No 150
>PRK00856 pyrB aspartate carbamoyltransferase catalytic subunit; Provisional
Probab=58.88 E-value=1.1e+02 Score=30.01 Aligned_cols=42 Identities=21% Similarity=0.289 Sum_probs=26.5
Q ss_pred ecCCCCCEEEEEeCcccchHHHHHHHHHHHHcCCCEEEEEEEcc
Q 018472 304 IGDVKGKVAVMVDDMIDTAGTIAKGAALLHQEGAREVYACCTHA 347 (355)
Q Consensus 304 ~gdVkGK~VLIVDDIIdTG~Tl~~aa~~Lk~~GA~~V~v~~tHg 347 (355)
.|+++|++|.+|=|..- +.|....+.++...|+ +|.+++.=+
T Consensus 151 ~G~l~g~kv~~vGD~~~-~~v~~Sl~~~~~~~g~-~~~~~~P~~ 192 (305)
T PRK00856 151 FGRLEGLKVAIVGDIKH-SRVARSNIQALTRLGA-EVRLIAPPT 192 (305)
T ss_pred hCCCCCCEEEEECCCCC-CcHHHHHHHHHHHcCC-EEEEECCcc
Confidence 36788999999988631 2444555555666686 566655443
No 151
>TIGR01143 murF UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase. This family consists of the strictly bacterial MurF gene of peptidoglycan biosynthesis. This enzyme is almost always UDP-N-acetylmuramoylalanyl-D-glutamyl-2,6-diaminopimelate--D-alanyl-D-alanyl ligase, but in a few species, MurE adds lysine rather than diaminopimelate. This enzyme acts on the product from MurE activity, and so is also subfamily rather than equivalog. Staphylococcus aureus is an example of species in this MurF protein would differ.
Probab=58.08 E-value=84 Score=31.74 Aligned_cols=130 Identities=15% Similarity=0.104 Sum_probs=66.0
Q ss_pred CHHHHHHHHHHhCCceecee--eeecCCCceEEEeccCcCCCcEEEEccCCCCchhHHHHHHHHHHHHHhcCCCeEEEEe
Q 018472 107 NPALSQEIACYMGVELGKIN--IKRFADGEIYVQLQESVRGCDVYLVQPTCPPANENLMELLIMIDACRRASAKNITAVI 184 (355)
Q Consensus 107 ~~~LA~~Ia~~Lg~~l~~~~--~~~FpDGE~~v~i~~~VrG~dV~iiqs~~~p~nd~lmELll~idalr~~~a~~ItlVi 184 (355)
|-..|-.++..||++...+. +..|.--+-+.++.+ . +.-.+|..+-.. | --.+.-.+++++... .++.+|+
T Consensus 258 N~laAia~~~~lGi~~~~i~~~l~~~~~~~gR~e~~~-~-~~~~vidDsya~--n--p~s~~~al~~l~~~~-~r~i~Vl 330 (417)
T TIGR01143 258 NALAAAALALELGIPLEEIAEGLAELKLVKGRFEIQT-K-NGLTLIDDTYNA--N--PDSMRAALDALARFP-GKKILVL 330 (417)
T ss_pred HHHHHHHHHHHcCCCHHHHHHHHHhCCCCCCceeEEc-C-CCcEEEEcCCCC--C--HHHHHHHHHHHHhCC-CCEEEEE
Confidence 33567778888999877654 566653222222221 1 222344443322 2 223344456666554 4667776
Q ss_pred eCc----cccccccccCCCCcchHHHHHHHHHHhCCCEEEEccCCchhhhcccCCccccccchHHHHHHHHhh
Q 018472 185 PYF----GYARADRKTQGRESIAAKLVANLITEAGADRVLACDLHSGQSMGYFDIPVDHVYCQPVILDYLASK 253 (355)
Q Consensus 185 PY~----~YaRqDr~~~~ge~isak~vA~lL~~~G~d~VitvDlHs~~~~~~F~ip~~~l~a~~~La~~L~~~ 253 (355)
--+ .|++. --+.+++.+....+|.|+.+.-+...+...++...........+.+++.+.
T Consensus 331 G~~~e~G~~~~~----------~~~~l~~~~~~~~~d~vi~~g~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~ 393 (417)
T TIGR01143 331 GDMAELGEYSEE----------LHAEVGRYANSLGIDLVFLVGEEAAVIYDSLGCKGFHFADKDELLAFLKLE 393 (417)
T ss_pred cCchhcChHHHH----------HHHHHHHHHHHcCCCEEEEECHHHHHHHHhcccCcEEECCHHHHHHHHHHh
Confidence 543 12221 123477777777789999987655444332321111122234455555543
No 152
>KOG1448 consensus Ribose-phosphate pyrophosphokinase [Nucleotide transport and metabolism; Amino acid transport and metabolism]
Probab=57.84 E-value=38 Score=33.50 Aligned_cols=130 Identities=18% Similarity=0.151 Sum_probs=78.3
Q ss_pred eeeecccccccCCCCCCCcccccccccchhhhhhhhhhhhcccCCCCEEEEEC-CCCHHHHHHHHHHhCCceeceeeeec
Q 018472 52 AVRCDMAEALNFPNGKPNIPVLNERTLPKFLETARMEKTVNRTTNNRIKLFSG-TANPALSQEIACYMGVELGKINIKRF 130 (355)
Q Consensus 52 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ifsg-~~~~~LA~~Ia~~Lg~~l~~~~~~~F 130 (355)
.|.|+.-.+--.+. -..|+.+.|..|.....-|.+...+ .+..|.|- ...-.=+..+|.+|+.....+.-.+=
T Consensus 124 vItmDlHa~Q~qgf--F~ipVdnly~~p~~l~~ir~~~~~~----~~~vivSPdaGgaKR~~s~ad~l~~~fali~ker~ 197 (316)
T KOG1448|consen 124 VITMDLHASQIQGF--FDIPVDNLYAEPAVLNYIRENIPDS----ENAVIVSPDAGGAKRVTSLADRLNLDFALIHKERR 197 (316)
T ss_pred EEEecccchhhCce--eeccchhhccchHHHHHHHhhCCCc----cceEEECCCcchhhhhHHHHHhhcchhhhhhhhhh
Confidence 34554443332222 2456667888888777777753222 33444443 33446777888888876654433332
Q ss_pred CCCce--EEEeccCcCCCcEEEEccCCCCchhHHHHHHHHHHHHHhcCCCeEEEEeeCccccc
Q 018472 131 ADGEI--YVQLQESVRGCDVYLVQPTCPPANENLMELLIMIDACRRASAKNITAVIPYFGYAR 191 (355)
Q Consensus 131 pDGE~--~v~i~~~VrG~dV~iiqs~~~p~nd~lmELll~idalr~~~a~~ItlViPY~~YaR 191 (355)
---|+ ..-+-++|+|+-+++|..+-.. ==-|.-..+-|.+.||++|.++.+.-=++.
T Consensus 198 k~~~v~~~m~LVGDv~gkvailVDDm~dt----~GTl~~aa~~L~~~GA~kV~a~~THgVfs~ 256 (316)
T KOG1448|consen 198 KANEVDIRMVLVGDVKGKVAILVDDMADT----CGTLIKAADKLLEHGAKKVYAIVTHGVFSG 256 (316)
T ss_pred cccccceEEEEEeccCCcEEEEecccccc----cchHHHHHHHHHhcCCceEEEEEcceeccc
Confidence 22333 3444589999999999776321 113455667777899999999988765443
No 153
>PRK07322 adenine phosphoribosyltransferase; Provisional
Probab=57.64 E-value=1.3e+02 Score=26.92 Aligned_cols=91 Identities=16% Similarity=0.169 Sum_probs=52.9
Q ss_pred CEEEEECCCCHHHHHHHHHHhCCceeceeeeec--CCCce--------------EEE---eccCcCCCcEEEEccCCCCc
Q 018472 98 RIKLFSGTANPALSQEIACYMGVELGKINIKRF--ADGEI--------------YVQ---LQESVRGCDVYLVQPTCPPA 158 (355)
Q Consensus 98 ~~~ifsg~~~~~LA~~Ia~~Lg~~l~~~~~~~F--pDGE~--------------~v~---i~~~VrG~dV~iiqs~~~p~ 158 (355)
...+=.....-.+|..+|+.||.++.-+.-.+- .+++. ... ....++|++|+||...-...
T Consensus 54 d~Iv~v~~gGiplA~~lA~~L~~p~~~~~k~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~gk~VLIVDDiitTG 133 (178)
T PRK07322 54 DVLVTPETKGIPLAHALSRRLGKPYVVARKSRKPYMQDPIIQEVVSITTGKPQLLVLDGADAEKLKGKRVAIVDDVVSTG 133 (178)
T ss_pred CEEEEeccCCHHHHHHHHHHHCCCEEEEEEeCCCCCCCceEEEEEEEEeccceEEEecCccccccCCCEEEEEecccccc
Confidence 343333455779999999999999754432221 22211 110 01236799999997764322
Q ss_pred hhHHHHHHHHHHHHHhcCCCeEEEEeeCccccccc
Q 018472 159 NENLMELLIMIDACRRASAKNITAVIPYFGYARAD 193 (355)
Q Consensus 159 nd~lmELll~idalr~~~a~~ItlViPY~~YaRqD 193 (355)
..+ .-+++.++++||+.|. +.=.+.|..++
T Consensus 134 -~Tl---~aa~~~L~~~GA~~V~-~~~v~~~~~~~ 163 (178)
T PRK07322 134 -GTL---TALERLVERAGGQVVA-KAAIFAEGDAS 163 (178)
T ss_pred -HHH---HHHHHHHHHcCCEEEE-EEEEEEcCCCC
Confidence 222 4566778999997654 33444555543
No 154
>PRK06242 flavodoxin; Provisional
Probab=57.13 E-value=1.2e+02 Score=25.61 Aligned_cols=96 Identities=15% Similarity=0.097 Sum_probs=52.8
Q ss_pred CCHHHHHHHHHHhCCceeceeeeecCCCceEEEeccCcCCCcEEEEccCCC--CchhHHHHHHHHHHHHHhcCCCeEEEE
Q 018472 106 ANPALSQEIACYMGVELGKINIKRFADGEIYVQLQESVRGCDVYLVQPTCP--PANENLMELLIMIDACRRASAKNITAV 183 (355)
Q Consensus 106 ~~~~LA~~Ia~~Lg~~l~~~~~~~FpDGE~~v~i~~~VrG~dV~iiqs~~~--p~nd~lmELll~idalr~~~a~~ItlV 183 (355)
++..+|+.||+.|+.++..+. .. ...++.+.|.+|+.+-.. .....+.+ +++.+....-+.+.++
T Consensus 14 nT~~~A~~ia~~l~~~~~~i~--~~--------~~~~~~~~d~ii~g~pvy~~~~~~~~~~---fl~~~~~~~~k~~~~f 80 (150)
T PRK06242 14 NTEKIAKAIAEVLDAEVIDPG--DV--------NPEDLSEYDLIGFGSGIYFGKFHKSLLK---LIEKLPPVSGKKAFIF 80 (150)
T ss_pred CHHHHHHHHHHhcCcEEecHH--HC--------CcccHhHCCEEEEeCchhcCCcCHHHHH---HHHhhhhhcCCeEEEE
Confidence 456999999999976544331 11 124566778888876321 11222333 3344433223444444
Q ss_pred eeCccccccccccCCCCcchHHHHHHHHHHhCCCEEEEccC
Q 018472 184 IPYFGYARADRKTQGRESIAAKLVANLITEAGADRVLACDL 224 (355)
Q Consensus 184 iPY~~YaRqDr~~~~ge~isak~vA~lL~~~G~d~VitvDl 224 (355)
.-| ++ . .+. ..+.+.++|...|+..+-.+..
T Consensus 81 ~t~-g~--~-----~~~--~~~~l~~~l~~~g~~~~~~~~~ 111 (150)
T PRK06242 81 STS-GL--P-----FLK--YHKALKKKLKEKGFEIVGEFSC 111 (150)
T ss_pred ECC-CC--C-----cch--HHHHHHHHHHHCCCEEEEEEec
Confidence 333 22 1 111 1678888999889888776544
No 155
>PRK03815 murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase; Provisional
Probab=57.01 E-value=1.1e+02 Score=31.18 Aligned_cols=151 Identities=13% Similarity=0.191 Sum_probs=83.0
Q ss_pred CHHHHHHHHHHhCCceeceeeeecCCCceEEEeccCcCCCcEEEEccCCCCchhHHHHHHHHHHHHHhcCCCeEEEEeeC
Q 018472 107 NPALSQEIACYMGVELGKINIKRFADGEIYVQLQESVRGCDVYLVQPTCPPANENLMELLIMIDACRRASAKNITAVIPY 186 (355)
Q Consensus 107 ~~~LA~~Ia~~Lg~~l~~~~~~~FpDGE~~v~i~~~VrG~dV~iiqs~~~p~nd~lmELll~idalr~~~a~~ItlViPY 186 (355)
|-..|-.+|..+|.+...-.+..|.--+-+.++-.... .+.+|... .+.|-+ -++.|++....++|++|+-
T Consensus 236 NalaA~a~a~~~G~~~~~~~L~~f~~~~~R~e~~~~~~--gv~~idDs-~~tn~~-----a~~~al~~~~~~~ii~IlG- 306 (401)
T PRK03815 236 DALLALAVYKILFDELDYERLNAFKIGKHKLEEFRDKQ--GRLWVDDS-KATNVD-----ATLQALKRYKDKKIHLILG- 306 (401)
T ss_pred HHHHHHHHHHHhCcHHHHHHHHhCCCCCceEEEEEEEC--CEEEEECC-CCCCHH-----HHHHHHHhCCCCCEEEEEC-
Confidence 44556667778883322234677877777777654442 46677654 344432 4456666543357888876
Q ss_pred ccccccccccCCCCcchHHHHHHHHHHhCCCEEEEccCCchhhhcc---cCCccccccchHHHHHHHHhhcCCCCCeEEE
Q 018472 187 FGYARADRKTQGRESIAAKLVANLITEAGADRVLACDLHSGQSMGY---FDIPVDHVYCQPVILDYLASKTVSSNDLVVV 263 (355)
Q Consensus 187 ~~YaRqDr~~~~ge~isak~vA~lL~~~G~d~VitvDlHs~~~~~~---F~ip~~~l~a~~~La~~L~~~~~~~~~~vVV 263 (355)
| .|+ ++.. ..+++.+..... .|+.+.-+...+... .+.+.........+.+++.+.. ...+.|++
T Consensus 307 -G---~~k----~~~~--~~l~~~~~~~~~-~v~~~G~~~~~~~~~~~~~~~~~~~~~~~e~av~~~~~~~-~~gdvVLl 374 (401)
T PRK03815 307 -G---DDK----GVDL--TPLFEFMKNLNI-ELYAIGSNTEKIQALAKEFNIKAFVCEFLEKAVEEIKKVL-KQNEVALL 374 (401)
T ss_pred -C---CCC----CCCH--HHHHHHHHhhCc-EEEEECCCHHHHHHHHhcCCCeEEEeCCHHHHHHHHHHhC-CCCCEEEe
Confidence 3 111 2223 256777766655 488887766444322 1212211212344444454322 34568999
Q ss_pred ecCCChhHHHHHHHH
Q 018472 264 SPDVGGVARARAFAK 278 (355)
Q Consensus 264 spd~Ggv~rA~~lA~ 278 (355)
+|...++..-+.+.+
T Consensus 375 SPa~aSfd~f~ny~~ 389 (401)
T PRK03815 375 SPAAASLDQFKSYKE 389 (401)
T ss_pred ChhhhccccccCHHH
Confidence 998887766555544
No 156
>PRK08564 5'-methylthioadenosine phosphorylase II; Reviewed
Probab=56.73 E-value=12 Score=36.31 Aligned_cols=79 Identities=13% Similarity=0.164 Sum_probs=47.8
Q ss_pred CCCEEEEECCCC---HHHHHHHHHHhCCceeceeeeecCCCceEEEeccCcCCCcEEEE--ccCCCCchhHHHHHHHHHH
Q 018472 96 NNRIKLFSGTAN---PALSQEIACYMGVELGKINIKRFADGEIYVQLQESVRGCDVYLV--QPTCPPANENLMELLIMID 170 (355)
Q Consensus 96 ~~~~~ifsg~~~---~~LA~~Ia~~Lg~~l~~~~~~~FpDGE~~v~i~~~VrG~dV~ii--qs~~~p~nd~lmELll~id 170 (355)
...+-|+.||+- ..|+..+-...-++.++ |-|++.+ ..+.|++|+++ |...+...-.-+..-.-+.
T Consensus 7 ~~~igiIgGSGl~~~~~l~~~~~~~~~tpyg~------p~~~l~~---g~l~g~~v~~l~RhGr~H~y~~~~i~~~a~i~ 77 (267)
T PRK08564 7 KASIGIIGGSGLYDPGIFENSKEVKVYTPYGE------PSDNIII---GEIEGVEVAFLPRHGRGHRIPPHKINYRANIW 77 (267)
T ss_pred CceEEEEecCCCCCCcccccceeeeEEcCCCC------CccCEEE---EEECCEEEEEEeCCCCCcccCCccCcchHHHH
Confidence 567889999886 44555443333344442 4455554 34568899998 5432211112223356788
Q ss_pred HHHhcCCCeEEEE
Q 018472 171 ACRRASAKNITAV 183 (355)
Q Consensus 171 alr~~~a~~ItlV 183 (355)
++|..|++.|.++
T Consensus 78 aLk~LGvk~iI~t 90 (267)
T PRK08564 78 ALKELGVEWVIAV 90 (267)
T ss_pred HHHHCCCcEEEEe
Confidence 9999999988754
No 157
>PF01380 SIS: SIS domain SIS domain web page.; InterPro: IPR001347 The SIS (Sugar ISomerase) domain is a phosphosugar-binding domain [] found in many phosphosugar isomerases and phosphosugar binding proteins. SIS domains are also found in proteins that regulate the expression of genes involved in synthesis of phosphosugars possibly by binding to the end-product of the pathway.; GO: 0005529 sugar binding, 0005975 carbohydrate metabolic process; PDB: 3TBF_C 2V4M_A 2ZJ4_A 2ZJ3_A 3FKJ_A 3ODP_A 3EUA_H 1VIV_A 1M3S_B 1TZB_A ....
Probab=56.12 E-value=6.5 Score=32.25 Aligned_cols=82 Identities=18% Similarity=0.293 Sum_probs=54.2
Q ss_pred CCCEEEEECCCCHHHHHHHHHHhCCceeceeeeecCCCceEEEeccCcCCCcEEEEccCCCCchhHHHHHHHHHHHHHhc
Q 018472 96 NNRIKLFSGTANPALSQEIACYMGVELGKINIKRFADGEIYVQLQESVRGCDVYLVQPTCPPANENLMELLIMIDACRRA 175 (355)
Q Consensus 96 ~~~~~ifsg~~~~~LA~~Ia~~Lg~~l~~~~~~~FpDGE~~v~i~~~VrG~dV~iiqs~~~p~nd~lmELll~idalr~~ 175 (355)
.+++.|++.-.+..+|+..+.+| .+++.....-+..+|..-.....+.-.|++|+=|.+. .+. |+.-.+..+|+.
T Consensus 5 ~~~i~i~G~G~s~~~A~~~~~~l-~~~~~~~~~~~~~~~~~~~~~~~~~~~d~vi~is~sg-~~~---~~~~~~~~ak~~ 79 (131)
T PF01380_consen 5 AKRIYIYGSGSSYGVAQYAALKL-QKLGRIVVISYEAGEFFHGPLENLDPDDLVIIISYSG-ETR---ELIELLRFAKER 79 (131)
T ss_dssp SSEEEEEESTHHHHHHHHHHHHH-HHHHSSEEEEEEHHHHHTTGGGGCSTTEEEEEEESSS-TTH---HHHHHHHHHHHT
T ss_pred CCEEEEEEcchHHHHHHHHHHHH-HHhcCcceeccchHHHhhhhcccccccceeEeeeccc-cch---hhhhhhHHHHhc
Confidence 45688888777888999999988 5666666666666664444334555568887777543 234 444555578888
Q ss_pred CCCeEEE
Q 018472 176 SAKNITA 182 (355)
Q Consensus 176 ~a~~Itl 182 (355)
|++-|.+
T Consensus 80 g~~vi~i 86 (131)
T PF01380_consen 80 GAPVILI 86 (131)
T ss_dssp TSEEEEE
T ss_pred CCeEEEE
Confidence 8866543
No 158
>KOG0814 consensus Glyoxylase [General function prediction only]
Probab=54.99 E-value=11 Score=34.67 Aligned_cols=44 Identities=34% Similarity=0.561 Sum_probs=38.2
Q ss_pred EeeecCCCCCEEEEEeCcccchHHHHHHHHHHHHcCCCEEEEEEEcc
Q 018472 301 MNLIGDVKGKVAVMVDDMIDTAGTIAKGAALLHQEGAREVYACCTHA 347 (355)
Q Consensus 301 ~~l~gdVkGK~VLIVDDIIdTG~Tl~~aa~~Lk~~GA~~V~v~~tHg 347 (355)
.-+.||.+.+..+|||.+.+| ..+-++++|+.|-+-+|++-||-
T Consensus 23 tYll~d~~~~~AviIDPV~et---~~RD~qlikdLgl~LiYa~NTH~ 66 (237)
T KOG0814|consen 23 TYLLGDHKTGKAVIIDPVLET---VSRDAQLIKDLGLDLIYALNTHV 66 (237)
T ss_pred EEEeeeCCCCceEEecchhhc---ccchHHHHHhcCceeeeeeccee
Confidence 356789999999999999975 56778899999999999999985
No 159
>smart00450 RHOD Rhodanese Homology Domain. An alpha beta fold found duplicated in the Rhodanese protein. The the Cysteine containing enzymatically active version of the domain is also found in the CDC25 class of protein phosphatases and a variety of proteins such as sulfide dehydrogenases and stress proteins such as Senesence specific protein 1 in plants, PspE and GlpE in bacteria and cyanide and arsenate resistance proteins. Inactive versions with a loss of the cysteine are also seen in Dual specificity phosphatases, ubiquitin hydrolases from yeast and in sulfuryltransferases. These are likely to play a role in protein interactions.
Probab=54.19 E-value=24 Score=26.67 Aligned_cols=34 Identities=32% Similarity=0.310 Sum_probs=28.1
Q ss_pred CCCCEEEEEeCcccchHHHHHHHHHHHHcCCCEEEEE
Q 018472 307 VKGKVAVMVDDMIDTAGTIAKGAALLHQEGAREVYAC 343 (355)
Q Consensus 307 VkGK~VLIVDDIIdTG~Tl~~aa~~Lk~~GA~~V~v~ 343 (355)
-+++.+|+++ .+|.....++..|++.|-..|+++
T Consensus 54 ~~~~~iv~~c---~~g~~a~~~~~~l~~~G~~~v~~l 87 (100)
T smart00450 54 DKDKPVVVYC---RSGNRSAKAAWLLRELGFKNVYLL 87 (100)
T ss_pred CCCCeEEEEe---CCCcHHHHHHHHHHHcCCCceEEe
Confidence 3578899998 578888999999999999887644
No 160
>PRK13814 pyrB aspartate carbamoyltransferase catalytic subunit; Provisional
Probab=53.93 E-value=1.3e+02 Score=29.67 Aligned_cols=155 Identities=12% Similarity=0.055 Sum_probs=87.1
Q ss_pred CcCCCcEEEEccCCCCchhHHHHHHHHHHHHHhcCCCeEEEEeeCccccccccccCCCCcchHHHHHHHHHHhCCCEEEE
Q 018472 142 SVRGCDVYLVQPTCPPANENLMELLIMIDACRRASAKNITAVIPYFGYARADRKTQGRESIAAKLVANLITEAGADRVLA 221 (355)
Q Consensus 142 ~VrG~dV~iiqs~~~p~nd~lmELll~idalr~~~a~~ItlViPY~~YaRqDr~~~~ge~isak~vA~lL~~~G~d~Vit 221 (355)
..+||.+..+= ..|... --+-+--|+++.|++-+. +. -++-....||++ +..|+.|+.+++|-|+.
T Consensus 42 ~L~gk~v~~lF--~epSTR---TR~SFe~A~~~LGg~~~~-----~~--~~~s~~~kgEsl--~Dtarvls~y~~D~iv~ 107 (310)
T PRK13814 42 TLKGHVVANLF--FEPSTR---TRNSFEIAAKRLGAMVLN-----PN--LKISAISKGETL--FDTIKTLEAMGVYFFIV 107 (310)
T ss_pred cCCCCEEEEEE--ecCcch---hHHHHHHHHHHhCCeEEE-----CC--CccccCCCCCCH--HHHHHHHHHhCCCEEEE
Confidence 46688766431 122111 124455678888984333 11 122334557765 78899999988887764
Q ss_pred ccCCchhhhcccCCccccccchHHHHHHHHhhcCCCCCeEEEecCCChhHHHHHHHHHcCCCCEEEEEEeecCCCeeEEE
Q 018472 222 CDLHSGQSMGYFDIPVDHVYCQPVILDYLASKTVSSNDLVVVSPDVGGVARARAFAKKLSDAPLAIVDKRRHGHNVAEVM 301 (355)
Q Consensus 222 vDlHs~~~~~~F~ip~~~l~a~~~La~~L~~~~~~~~~~vVVspd~Ggv~rA~~lA~~L~~~p~~~v~K~R~~~~~~e~~ 301 (355)
= | + ....++.+.+.. ...++|-+-+.....-.+.+++.+- + .
T Consensus 108 R--~-------~---------~~~~~~~~a~~~--~~vPvINag~g~~~HPtQaLaDl~T-i-----------------~ 149 (310)
T PRK13814 108 R--H-------S---------ENETPEQIAKQL--SSGVVINAGDGNHQHPSQALIDLMT-I-----------------K 149 (310)
T ss_pred e--C-------C---------chhHHHHHHHhC--CCCCeEECCcCCCCCchHHHHHHHH-H-----------------H
Confidence 1 1 1 122223332221 1245555556666777888887664 1 0
Q ss_pred eeecCCCCCEEEEEeCcccchHHHHHHHHHHHHcCCCEEEEEEEcccc
Q 018472 302 NLIGDVKGKVAVMVDDMIDTAGTIAKGAALLHQEGAREVYACCTHAVF 349 (355)
Q Consensus 302 ~l~gdVkGK~VLIVDDIIdTG~Tl~~aa~~Lk~~GA~~V~v~~tHglf 349 (355)
+..|+++|.+|.+|=|+- -+.|....+..+...|..+|++++.=++.
T Consensus 150 e~~g~l~g~~va~vGD~~-~~rv~~Sl~~~~a~~g~~~v~~~~P~~~~ 196 (310)
T PRK13814 150 QHKPHWNKLCVTIIGDIR-HSRVANSLMDGLVTMGVPEIRLVGPSSLL 196 (310)
T ss_pred HHhCCcCCcEEEEECCCC-CCcHHHHHHHHHHHcCCCEEEEeCCcccC
Confidence 123567888888888873 23445555556667787677777765543
No 161
>PRK07631 amidophosphoribosyltransferase; Provisional
Probab=53.60 E-value=45 Score=35.01 Aligned_cols=75 Identities=19% Similarity=0.151 Sum_probs=42.9
Q ss_pred CCHHHHHHHHHHhCCceeceeeee------cCCC-----ce----EEE-eccCcCCCcEEEEccCCCCchhHHHHHHHHH
Q 018472 106 ANPALSQEIACYMGVELGKINIKR------FADG-----EI----YVQ-LQESVRGCDVYLVQPTCPPANENLMELLIMI 169 (355)
Q Consensus 106 ~~~~LA~~Ia~~Lg~~l~~~~~~~------FpDG-----E~----~v~-i~~~VrG~dV~iiqs~~~p~nd~lmELll~i 169 (355)
+...+|..+|+.+|+++...-+++ |.-- +. .+. +.+.++||.|++|...--. -.. |--++
T Consensus 293 s~~~~A~gla~~~gip~~~~lik~~~~~Rt~i~~~~~~R~~nv~~~f~~~~~~v~gk~VlLVDDsitt--GtT--l~~~~ 368 (475)
T PRK07631 293 SSISAAIGYAEATGIPYELGLIKNRYVGRTFIQPSQALREQGVKMKLSPVRGVVEGKRVVMVDDSIVR--GTT--SRRIV 368 (475)
T ss_pred hHHHHHHHHHHHHCCCcccceEEEecCCCCCcCCCHHHHHHHHhhhhhhcccccCCceEEEEeeeecc--HHH--HHHHH
Confidence 345799999999999986533332 2211 10 111 1245667777777543211 112 22456
Q ss_pred HHHHhcCCCeEEEEe
Q 018472 170 DACRRASAKNITAVI 184 (355)
Q Consensus 170 dalr~~~a~~ItlVi 184 (355)
.+||++||++|.+.+
T Consensus 369 ~~L~~aGA~eV~v~~ 383 (475)
T PRK07631 369 TMLREAGATEVHVRI 383 (475)
T ss_pred HHHHHcCCCEEEEEE
Confidence 777888888877765
No 162
>PRK07823 5'-methylthioadenosine phosphorylase; Validated
Probab=53.44 E-value=19 Score=34.92 Aligned_cols=82 Identities=11% Similarity=0.107 Sum_probs=47.9
Q ss_pred ccCCCCEEEEECCCCHHHHH-HH-HHHhCCceeceeeeecCCCceEEEeccCcCCCcEEEE--ccCCCCchhHHHHHHHH
Q 018472 93 RTTNNRIKLFSGTANPALSQ-EI-ACYMGVELGKINIKRFADGEIYVQLQESVRGCDVYLV--QPTCPPANENLMELLIM 168 (355)
Q Consensus 93 ~~~~~~~~ifsg~~~~~LA~-~I-a~~Lg~~l~~~~~~~FpDGE~~v~i~~~VrG~dV~ii--qs~~~p~nd~lmELll~ 168 (355)
.|+...+-|+.||.--.+++ .+ -...-++.++ |-|++.+ ..+.|++|+++ |...+...-.-+..-.-
T Consensus 2 ~~~~p~igII~GSGl~~l~~~~~~~~~~~tpyg~------~sg~l~~---G~l~g~~v~~l~RhGr~H~ye~~~i~~ran 72 (264)
T PRK07823 2 HNNGAMLGVIGGSGFYSFFGSDAREVNVDTPYGP------PSAPITI---GEVGGRRVAFLPRHGRDHEFSPHTVPYRAN 72 (264)
T ss_pred CCCCceEEEEeccccchhhcccceeeEEeccCCC------CCCCEEE---EEECCEEEEEEeCCCCCCCcCCCCccchHH
Confidence 45577889999988655543 11 1111222222 3355443 45678899999 54332111112446677
Q ss_pred HHHHHhcCCCeEEEE
Q 018472 169 IDACRRASAKNITAV 183 (355)
Q Consensus 169 idalr~~~a~~ItlV 183 (355)
+.++|..|++.|.+.
T Consensus 73 i~alk~lGv~~ii~t 87 (264)
T PRK07823 73 MWALRALGVRRVFAP 87 (264)
T ss_pred HHHHHHcCCCEEEEe
Confidence 789999999998753
No 163
>PRK11930 putative bifunctional UDP-N-acetylmuramoyl-tripeptide:D-alanyl-D-alanine ligase/alanine racemase; Provisional
Probab=52.89 E-value=93 Score=34.61 Aligned_cols=148 Identities=18% Similarity=0.241 Sum_probs=75.8
Q ss_pred HHHHHHHHHhCCceecee--eeecCCCceEEEeccCcCCCcE-EEEccCCCCchhHHHHHHHHHHHHHhcCC-CeEEEEe
Q 018472 109 ALSQEIACYMGVELGKIN--IKRFADGEIYVQLQESVRGCDV-YLVQPTCPPANENLMELLIMIDACRRASA-KNITAVI 184 (355)
Q Consensus 109 ~LA~~Ia~~Lg~~l~~~~--~~~FpDGE~~v~i~~~VrG~dV-~iiqs~~~p~nd~lmELll~idalr~~~a-~~ItlVi 184 (355)
..|-.+|..||++...+. +..|.-=+-+.++.... ..+ +|..+-. .+.-.+.-.++++++... +++.+|+
T Consensus 292 laAia~a~~lGi~~~~i~~~L~~f~~~~gR~e~~~~~--~g~~vIdDSyn----~nP~s~~aaL~~l~~~~~~~~~ilIl 365 (822)
T PRK11930 292 IHCIAVLLYLGYSADQIQERMARLEPVAMRLEVKEGI--NNCTLINDSYN----SDLQSLDIALDFLNRRSQSKKKTLIL 365 (822)
T ss_pred HHHHHHHHHcCCCHHHHHHHHHhCCCCCCeeEEEEcC--CCcEEEECCCC----CCHHHHHHHHHHHHhcccCCCEEEEE
Confidence 456677888999877665 56664433344443222 233 4444332 223344555567765432 4667786
Q ss_pred eCccccccccccCCCC--cchHHHHHHHHHHhCCCEEEEccCCchhhhcccC-CccccccchHHHHHHHHhhcCCCCCeE
Q 018472 185 PYFGYARADRKTQGRE--SIAAKLVANLITEAGADRVLACDLHSGQSMGYFD-IPVDHVYCQPVILDYLASKTVSSNDLV 261 (355)
Q Consensus 185 PY~~YaRqDr~~~~ge--~isak~vA~lL~~~G~d~VitvDlHs~~~~~~F~-ip~~~l~a~~~La~~L~~~~~~~~~~v 261 (355)
.=+. +.|+ .-.-+.+++.+...++++|+.+.-+.......+. .+.......+.+.+++.+.. ...+.|
T Consensus 366 G~m~--------elG~~~~~~~~~l~~~l~~~~i~~vi~~G~~~~~~~~~~~~~~~~~~~~~e~a~~~l~~~~-~~gDvV 436 (822)
T PRK11930 366 SDIL--------QSGQSPEELYRKVAQLISKRGIDRLIGIGEEISSEASKFEGTEKEFFKTTEAFLKSFAFLK-FRNELI 436 (822)
T ss_pred CChH--------hcCchHHHHHHHHHHHHHHcCCCEEEEECHHHHHHHHhcCccccEEECCHHHHHHHHHHhc-CCCCEE
Confidence 6221 1121 1123456777776789999998765443332222 12222233456667776543 233444
Q ss_pred EEecCCChhHH
Q 018472 262 VVSPDVGGVAR 272 (355)
Q Consensus 262 VVspd~Ggv~r 272 (355)
++ --.++..+
T Consensus 437 Ll-KGSr~~~l 446 (822)
T PRK11930 437 LV-KGARKFEF 446 (822)
T ss_pred EE-EcCCCCCH
Confidence 43 33444443
No 164
>cd00158 RHOD Rhodanese Homology Domain (RHOD); an alpha beta fold domain found duplicated in the rhodanese protein. The cysteine containing enzymatically active version of the domain is also found in the Cdc25 class of protein phosphatases and a variety of proteins such as sulfide dehydrogenases and certain stress proteins such as senesence specific protein 1 in plants, PspE and GlpE in bacteria and cyanide and arsenate resistance proteins. Inactive versions (no active site cysteine) are also seen in dual specificity phosphatases, ubiquitin hydrolases from yeast and in sulfuryltransferases, where they are believed to play a regulatory role in multidomain proteins.
Probab=52.73 E-value=27 Score=26.04 Aligned_cols=34 Identities=29% Similarity=0.333 Sum_probs=28.4
Q ss_pred CCCCEEEEEeCcccchHHHHHHHHHHHHcCCCEEEEE
Q 018472 307 VKGKVAVMVDDMIDTAGTIAKGAALLHQEGAREVYAC 343 (355)
Q Consensus 307 VkGK~VLIVDDIIdTG~Tl~~aa~~Lk~~GA~~V~v~ 343 (355)
-+++.||++++- |.....++..|++.|-..|+++
T Consensus 48 ~~~~~vv~~c~~---~~~a~~~~~~l~~~G~~~v~~l 81 (89)
T cd00158 48 DKDKPIVVYCRS---GNRSARAAKLLRKAGGTNVYNL 81 (89)
T ss_pred CCCCeEEEEeCC---CchHHHHHHHHHHhCcccEEEe
Confidence 467899998885 7788899999999998888754
No 165
>cd01529 4RHOD_Repeats Member of the Rhodanese Homology Domain superfamily. This CD includes putative rhodanese-related sulfurtransferases which contain 4 copies of the Rhodanese Homology Domain. Only the second and most of the fourth repeats contain the putative catalytic Cys residue. This CD aligns the 1st , 2nd, 3rd, and 4th repeats.
Probab=50.70 E-value=29 Score=27.18 Aligned_cols=33 Identities=18% Similarity=0.035 Sum_probs=27.0
Q ss_pred CCCEEEEEeCcccchHHHHHHHHHHHHcCCCEEEEE
Q 018472 308 KGKVAVMVDDMIDTAGTIAKGAALLHQEGAREVYAC 343 (355)
Q Consensus 308 kGK~VLIVDDIIdTG~Tl~~aa~~Lk~~GA~~V~v~ 343 (355)
+++++|++++ +|.....++..|++.|-.+|+.+
T Consensus 55 ~~~~ivv~c~---~g~~s~~~~~~l~~~G~~~v~~l 87 (96)
T cd01529 55 RATRYVLTCD---GSLLARFAAQELLALGGKPVALL 87 (96)
T ss_pred CCCCEEEEeC---ChHHHHHHHHHHHHcCCCCEEEe
Confidence 4678899975 78888889999999999887654
No 166
>COG2185 Sbm Methylmalonyl-CoA mutase, C-terminal domain/subunit (cobalamin-binding) [Lipid metabolism]
Probab=50.68 E-value=33 Score=30.32 Aligned_cols=34 Identities=24% Similarity=0.204 Sum_probs=26.3
Q ss_pred CcEEEEccCCCCchhHHHHHHHHHHHHHhcCCCeEEE
Q 018472 146 CDVYLVQPTCPPANENLMELLIMIDACRRASAKNITA 182 (355)
Q Consensus 146 ~dV~iiqs~~~p~nd~lmELll~idalr~~~a~~Itl 182 (355)
-||+.|.++.. ...-..--++++||+.|+..|.+
T Consensus 64 v~vIgvSsl~g---~h~~l~~~lve~lre~G~~~i~v 97 (143)
T COG2185 64 VDVIGVSSLDG---GHLTLVPGLVEALREAGVEDILV 97 (143)
T ss_pred CCEEEEEeccc---hHHHHHHHHHHHHHHhCCcceEE
Confidence 48999988853 33444567899999999999983
No 167
>PF14681 UPRTase: Uracil phosphoribosyltransferase; PDB: 1V9S_B 1UPF_A 1UPU_D 1JLR_B 1BD4_A 1BD3_C 1JLS_D 1XTV_C 1XTU_H 3G6W_C ....
Probab=49.75 E-value=1.5e+02 Score=27.19 Aligned_cols=83 Identities=19% Similarity=0.302 Sum_probs=59.8
Q ss_pred CCEEEEE-CCCCHHHHHHHHHHh-CCceeceeeeecCCC----ceEEEeccCcCCCcEEEEccCCCCchhHHHHHHHHHH
Q 018472 97 NRIKLFS-GTANPALSQEIACYM-GVELGKINIKRFADG----EIYVQLQESVRGCDVYLVQPTCPPANENLMELLIMID 170 (355)
Q Consensus 97 ~~~~ifs-g~~~~~LA~~Ia~~L-g~~l~~~~~~~FpDG----E~~v~i~~~VrG~dV~iiqs~~~p~nd~lmELll~id 170 (355)
.++++++ ..+...|.+.+.+.+ +.+.+.+-+.+=++. +.|.++++++.++.|+++.++..-.+. +...++
T Consensus 67 ~~i~~V~IlRaG~~m~~~~~~~~p~a~~g~i~i~r~~~t~~p~~~y~~LP~~i~~~~VillDpmlaTG~s----~~~ai~ 142 (207)
T PF14681_consen 67 DKICIVPILRAGLPMLEGFREVFPDARVGHIGIQRDEETLEPVLYYNKLPEDIENRKVILLDPMLATGGS----AIAAIE 142 (207)
T ss_dssp GCEEEEEETTTHHHHHHHHHHHSTTSEEEEEEEEEETTTSSEEEEEEE--TTGTTSEEEEEESEESSSHH----HHHHHH
T ss_pred ccEEEEEEeCCcHHHHHHHHHhCCCcceEEEEEEEcCCccceeeeHhhCCCCccCCEEEEEeccccchhh----HHHHHH
Confidence 3677666 577779999999998 678888888885543 478889999988999999887654332 355677
Q ss_pred HHHhcCC--CeEEEE
Q 018472 171 ACRRASA--KNITAV 183 (355)
Q Consensus 171 alr~~~a--~~ItlV 183 (355)
.+++.|+ ++|+++
T Consensus 143 ~L~~~G~~~~~I~~v 157 (207)
T PF14681_consen 143 ILKEHGVPEENIIIV 157 (207)
T ss_dssp HHHHTTG-GGEEEEE
T ss_pred HHHHcCCCcceEEEE
Confidence 7888776 577643
No 168
>TIGR00393 kpsF KpsF/GutQ family protein. This model describes a number of closely related proteins with the phosphosugar-binding domain SIS (Sugar ISomerase) followed by two copies of the CBS (named after Cystathionine Beta Synthase) domain. One is GutQ, a protein of the glucitol operon. Another is KpsF, a virulence factor involved in capsular polysialic acid biosynthesis in some pathogenic strains of E. coli.
Probab=49.60 E-value=59 Score=30.36 Aligned_cols=80 Identities=19% Similarity=0.099 Sum_probs=51.3
Q ss_pred CEEEEECCCCHHHHHHHHHHhCCceeceeeeecCCCceEEEeccCcCCCcEEEEccCCCCchhHHHHHHHHHHHHHhcCC
Q 018472 98 RIKLFSGTANPALSQEIACYMGVELGKINIKRFADGEIYVQLQESVRGCDVYLVQPTCPPANENLMELLIMIDACRRASA 177 (355)
Q Consensus 98 ~~~ifsg~~~~~LA~~Ia~~Lg~~l~~~~~~~FpDGE~~v~i~~~VrG~dV~iiqs~~~p~nd~lmELll~idalr~~~a 177 (355)
++.+|+.-.+..+|+.++.+|-. +++. +..+.|.|........+...|++|+=|.+.. +. |++-++..+|+.|+
T Consensus 2 rI~i~G~G~S~~~a~~~~~~l~~-~g~~-~~~~~~~~~~~~~~~~~~~~d~~i~iS~sG~-t~---~~~~~~~~a~~~g~ 75 (268)
T TIGR00393 2 KLVIVGIGKSGLIGKKIVATFAS-TGTP-SFFLHPTEAMHGDLGMVEPNDVVLMISYSGE-SL---ELLNLIPHLKRLSH 75 (268)
T ss_pred cEEEEecChHHHHHHHHHHHHHh-cCCc-eEEeCHhHHhhcccCCCCCCCEEEEEeCCCC-CH---HHHHHHHHHHHcCC
Confidence 46677766677888888887642 2222 2234566655443445666789988777543 33 55677788999998
Q ss_pred CeEEEE
Q 018472 178 KNITAV 183 (355)
Q Consensus 178 ~~ItlV 183 (355)
+-|.+.
T Consensus 76 ~ii~iT 81 (268)
T TIGR00393 76 KIIAFT 81 (268)
T ss_pred cEEEEE
Confidence 766543
No 169
>PLN02640 glucose-6-phosphate 1-dehydrogenase
Probab=49.45 E-value=9.7 Score=40.77 Aligned_cols=101 Identities=21% Similarity=0.230 Sum_probs=45.1
Q ss_pred CCCcCCCCCCCccccCCCCCCCCCCCCCCCCCccccccCCCccccccc-ccceeeecccccccCCCCCCCcccccccccc
Q 018472 1 MASLTMPRPSQSTSASCSSPIPSRCSFGDQNPTFSFSFRDSRSRVHVC-NAAAVRCDMAEALNFPNGKPNIPVLNERTLP 79 (355)
Q Consensus 1 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 79 (355)
||.-||.+|+|+.++ ++.++-|...-+-++.+..-+|+..++. ....+.......++..+|.| + +.-+++
T Consensus 1 ~~~~~~~~~~~~~~~-----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~---~~~~~~ 71 (573)
T PLN02640 1 MATHFMSPCSSSSTN-----FLASSCFKETVPLFSRSITFPRKSTFVSQIHSRIHARKHFQLKSSNGHP-L---NAVSLQ 71 (573)
T ss_pred CCccccCccccccch-----hHHHhhhhhcccchhccccccccchHHHHHHHHHhhhhheeeccCCCCc-c---cceecc
Confidence 788899888776544 2233334443344444444444433222 11122222233344445544 2 222333
Q ss_pred hhhhhhhhhhhhcccCCCCEEEEECCCCHHHHH
Q 018472 80 KFLETARMEKTVNRTTNNRIKLFSGTANPALSQ 112 (355)
Q Consensus 80 ~~~~~~~~~~~~~~~~~~~~~ifsg~~~~~LA~ 112 (355)
..-.-.-.++....+....+.||.++. +||+
T Consensus 72 ~~~~~~~~~~~~~~~~~~~iVIFGATG--DLA~ 102 (573)
T PLN02640 72 DGENHLTEEHAEKGESTLSITVVGASG--DLAK 102 (573)
T ss_pred cccccccHhhccCCCCCeEEEEeCCcc--Hhhh
Confidence 333233333334344445567776555 3444
No 170
>cd01444 GlpE_ST GlpE sulfurtransferase (ST) and homologs are members of the Rhodanese Homology Domain superfamily. Unlike other rhodanese sulfurtransferases, GlpE is a single domain protein but indications are that it functions as a dimer. The active site contains a catalytically active cysteine.
Probab=48.37 E-value=27 Score=26.96 Aligned_cols=32 Identities=19% Similarity=0.192 Sum_probs=27.6
Q ss_pred CCCEEEEEeCcccchHHHHHHHHHHHHcCCCEEEE
Q 018472 308 KGKVAVMVDDMIDTAGTIAKGAALLHQEGAREVYA 342 (355)
Q Consensus 308 kGK~VLIVDDIIdTG~Tl~~aa~~Lk~~GA~~V~v 342 (355)
+++.++++++ +|.+...++..|++.|-..|+.
T Consensus 55 ~~~~ivv~c~---~g~~s~~a~~~l~~~G~~~v~~ 86 (96)
T cd01444 55 RDRPVVVYCY---HGNSSAQLAQALREAGFTDVRS 86 (96)
T ss_pred CCCCEEEEeC---CCChHHHHHHHHHHcCCceEEE
Confidence 5678888877 8899999999999999988873
No 171
>cd05710 SIS_1 A subgroup of the SIS domain. SIS (Sugar ISomerase) domains are found in many phosphosugar isomerases and phosphosugar binding proteins. SIS domains are also found in proteins that regulate the expression of genes involved in synthesis of phosphosugars.
Probab=48.05 E-value=29 Score=28.77 Aligned_cols=77 Identities=9% Similarity=0.061 Sum_probs=43.3
Q ss_pred EEEEECCCCHHHHHHHHHHhCCceeceeeeecCCCceEEEeccCcCCCcEEEEccCCCCchhHHHHHHHHHHHHHhcCCC
Q 018472 99 IKLFSGTANPALSQEIACYMGVELGKINIKRFADGEIYVQLQESVRGCDVYLVQPTCPPANENLMELLIMIDACRRASAK 178 (355)
Q Consensus 99 ~~ifsg~~~~~LA~~Ia~~Lg~~l~~~~~~~FpDGE~~v~i~~~VrG~dV~iiqs~~~p~nd~lmELll~idalr~~~a~ 178 (355)
+.+++.-++...|......|.. +....+.-+.+.|..-.....+...|++|+=|.+.. ++ |++-.++.+|+.|++
T Consensus 2 I~i~G~G~S~~~A~~~~~~l~~-~~~~~~~~~~~~~~~~~~~~~~~~~dl~I~iS~SG~-t~---~~~~~~~~a~~~g~~ 76 (120)
T cd05710 2 VFFVGCGGSLADMYPAKYFLKK-ESKLPVFVYNAAEFLHTGPKRLTEKSVVILASHSGN-TK---ETVAAAKFAKEKGAT 76 (120)
T ss_pred EEEEEecHHHHHHhHHHHHHHH-hcCCceEEEcHHHHhhcCcccCCCCcEEEEEeCCCC-Ch---HHHHHHHHHHHcCCe
Confidence 3444433444444444444332 334455567777655444445656788888776543 33 556677788888885
Q ss_pred eE
Q 018472 179 NI 180 (355)
Q Consensus 179 ~I 180 (355)
-|
T Consensus 77 vi 78 (120)
T cd05710 77 VI 78 (120)
T ss_pred EE
Confidence 44
No 172
>TIGR00658 orni_carb_tr ornithine carbamoyltransferase. Most OTCases are homotrimers, but the homotrimers are organized into dodecamers built from four trimers in at least two species; the catabolic OTCase of Pseudomonas aeruginosa is allosterically regulated, while OTCase of the extreme thermophile Pyrococcus furiosus shows both allostery and thermophily.
Probab=47.46 E-value=2.4e+02 Score=27.60 Aligned_cols=126 Identities=18% Similarity=0.120 Sum_probs=69.7
Q ss_pred HHHHHHHHhcCCCeEEEEeeCccccccccccCCCCcchHHHHHHHHHHhCCCEEEEccCCchhhhcccCCccccccchHH
Q 018472 166 LIMIDACRRASAKNITAVIPYFGYARADRKTQGRESIAAKLVANLITEAGADRVLACDLHSGQSMGYFDIPVDHVYCQPV 245 (355)
Q Consensus 166 ll~idalr~~~a~~ItlViPY~~YaRqDr~~~~ge~isak~vA~lL~~~G~d~VitvDlHs~~~~~~F~ip~~~l~a~~~ 245 (355)
+-+-.|+++.|++-|.+- + ++-....||+ .+..+++|+.+ +|-|+.= | + ...
T Consensus 55 ~SFe~A~~~LGg~~i~l~-~------~~ss~~kgEs--l~Dt~~vls~y-~D~iv~R--~----------~------~~~ 106 (304)
T TIGR00658 55 VSFEVAAYQLGGHPLYLN-P------NDLQLGRGES--IKDTARVLSRY-VDGIMAR--V----------Y------KHE 106 (304)
T ss_pred HHHHHHHHHcCCCEEEeC-C------ccccCCCCCC--HHHHHHHHHHh-CCEEEEE--C----------C------ChH
Confidence 445567777888666431 1 1112234664 46677777776 6766641 1 0 111
Q ss_pred HHHHHHhhcCCCCCeEEEecCCChhHHHHHHHHHcCCCCEEEEEEeecCCCeeEEEeeecCCCCCEEEEEeCcccchHHH
Q 018472 246 ILDYLASKTVSSNDLVVVSPDVGGVARARAFAKKLSDAPLAIVDKRRHGHNVAEVMNLIGDVKGKVAVMVDDMIDTAGTI 325 (355)
Q Consensus 246 La~~L~~~~~~~~~~vVVspd~Ggv~rA~~lA~~L~~~p~~~v~K~R~~~~~~e~~~l~gdVkGK~VLIVDDIIdTG~Tl 325 (355)
..+.+.+. .+-+||=+ ..++..-.+.+++.+- + ....|.++|.+|.+|=|+ +.|+
T Consensus 107 ~~~~~a~~---~~vPVINa-~~~~~HPtQaL~Dl~T-i-----------------~e~~g~l~g~~v~~vGd~---~~v~ 161 (304)
T TIGR00658 107 DVEELAKY---ASVPVING-LTDLFHPCQALADLLT-I-----------------IEHFGKLKGVKVVYVGDG---NNVC 161 (304)
T ss_pred HHHHHHHh---CCCCEEEC-CCCCCChHHHHHHHHH-H-----------------HHHhCCCCCcEEEEEeCC---CchH
Confidence 22222222 12334433 3345666666666553 1 112356889999999887 4677
Q ss_pred HHHHHHHHHcCCCEEEEEEE
Q 018472 326 AKGAALLHQEGAREVYACCT 345 (355)
Q Consensus 326 ~~aa~~Lk~~GA~~V~v~~t 345 (355)
...+..+...|+ +|.+++.
T Consensus 162 ~Sl~~~l~~~g~-~v~~~~P 180 (304)
T TIGR00658 162 NSLMLAGAKLGM-DVVVATP 180 (304)
T ss_pred HHHHHHHHHcCC-EEEEECC
Confidence 777778888885 5555543
No 173
>PRK09219 xanthine phosphoribosyltransferase; Validated
Probab=45.02 E-value=2.4e+02 Score=25.68 Aligned_cols=71 Identities=20% Similarity=0.162 Sum_probs=44.2
Q ss_pred CCCCHHHHHHHHHHhCCceeceeee-ecC---------------CCceEEEeccC--cCCCcEEEEccCCCCchhHHHHH
Q 018472 104 GTANPALSQEIACYMGVELGKINIK-RFA---------------DGEIYVQLQES--VRGCDVYLVQPTCPPANENLMEL 165 (355)
Q Consensus 104 g~~~~~LA~~Ia~~Lg~~l~~~~~~-~Fp---------------DGE~~v~i~~~--VrG~dV~iiqs~~~p~nd~lmEL 165 (355)
-...-.||..+|.+||.++.-+.-. +.+ .+|-.+.+..+ -+|++|+||...-..- . -+
T Consensus 58 e~~GiplA~~lA~~Lg~p~v~vRK~~k~~~~~~~~~~~~~~~~~~~~~~l~i~~~~i~~G~rVlIVDDviaTG-g---T~ 133 (189)
T PRK09219 58 EASGIAPAVMAALALGVPVVFAKKKKSLTLTDDVYTATVYSFTKQVTSTVSVSKKFLSEGDRVLIIDDFLANG-Q---AA 133 (189)
T ss_pred ccccHHHHHHHHHHHCCCEEEEEECCCCCCCCceEEEEEeeeccCceEEEEEEhhhCCCCCEEEEEeehhhcC-h---HH
Confidence 3556799999999999987544432 122 12223333332 2688999986543211 1 24
Q ss_pred HHHHHHHHhcCCC
Q 018472 166 LIMIDACRRASAK 178 (355)
Q Consensus 166 ll~idalr~~~a~ 178 (355)
+-+++.++++|++
T Consensus 134 ~a~~~lv~~aGa~ 146 (189)
T PRK09219 134 LGLIDIIEQAGAK 146 (189)
T ss_pred HHHHHHHHHCCCE
Confidence 6677889999985
No 174
>PRK09177 xanthine-guanine phosphoribosyltransferase; Validated
Probab=44.25 E-value=93 Score=27.41 Aligned_cols=60 Identities=15% Similarity=0.147 Sum_probs=41.0
Q ss_pred CCEEEEECCCCHHHHHHHHHHhCCcee-ceeeeec---CCCceEEEeccCcCCCcEEEEccCCC
Q 018472 97 NRIKLFSGTANPALSQEIACYMGVELG-KINIKRF---ADGEIYVQLQESVRGCDVYLVQPTCP 156 (355)
Q Consensus 97 ~~~~ifsg~~~~~LA~~Ia~~Lg~~l~-~~~~~~F---pDGE~~v~i~~~VrG~dV~iiqs~~~ 156 (355)
..+.|--..+.--+|..++.+||++.. .+.+..| ..|++.+.-.-..+|++|+||.....
T Consensus 32 ~d~vvgv~~GG~~fa~~L~~~L~~~~v~~i~~ssY~~~~~~~~~~~~~~~~~gk~VLIVDDIiD 95 (156)
T PRK09177 32 WKGIIAVTRGGLVPAAILARELGIRLVDTVCISSYDHDNQGELKVLKRAEGDGEGFLVVDDLVD 95 (156)
T ss_pred CCEEEEEecCCeehHHHHHHHcCCCceeEEEEEEECCCcCCcEEEecCCCcCcCEEEEEeeeeC
Confidence 345444456777899999999998853 2333344 33566665555678999999987654
No 175
>PRK01713 ornithine carbamoyltransferase; Provisional
Probab=44.10 E-value=2.8e+02 Score=27.62 Aligned_cols=41 Identities=15% Similarity=0.131 Sum_probs=28.6
Q ss_pred CCCCCEEEEEeCcccchHHHHHHHHHHHHcCCCEEEEEEEcccc
Q 018472 306 DVKGKVAVMVDDMIDTAGTIAKGAALLHQEGAREVYACCTHAVF 349 (355)
Q Consensus 306 dVkGK~VLIVDDIIdTG~Tl~~aa~~Lk~~GA~~V~v~~tHglf 349 (355)
+++|++|.+|=|+- .+ +....+..+...|+ +|.+++.-++.
T Consensus 153 ~l~gl~ia~vGD~~-~~-v~~Sl~~~~~~~g~-~v~~~~P~~~~ 193 (334)
T PRK01713 153 PLSEISYVYIGDAR-NN-MGNSLLLIGAKLGM-DVRICAPKALL 193 (334)
T ss_pred CcCCcEEEEECCCc-cC-HHHHHHHHHHHcCC-EEEEECCchhc
Confidence 68899999999973 23 55556666777787 57776665543
No 176
>TIGR01744 XPRTase xanthine phosphoribosyltransferase. This model represent a xanthine-specific phosphoribosyltransferase of Bacillus subtilis and closely related proteins from other species, mostly from other Gram-positive bacteria. The adjacent gene is a xanthine transporter; B. subtilis can import xanthine for the purine salvage pathway or for catabolism to obtain nitrogen.
Probab=43.74 E-value=2.4e+02 Score=25.78 Aligned_cols=77 Identities=13% Similarity=0.073 Sum_probs=48.0
Q ss_pred CEEEEECCCCHHHHHHHHHHhCCceeceeeee-cC---------------CCceEEEecc-Cc-CCCcEEEEccCCCCch
Q 018472 98 RIKLFSGTANPALSQEIACYMGVELGKINIKR-FA---------------DGEIYVQLQE-SV-RGCDVYLVQPTCPPAN 159 (355)
Q Consensus 98 ~~~ifsg~~~~~LA~~Ia~~Lg~~l~~~~~~~-Fp---------------DGE~~v~i~~-~V-rG~dV~iiqs~~~p~n 159 (355)
...+=.....-.||..+|..||+++.-+.-.. .+ .++....+.. .+ +|+.|+||...-..-
T Consensus 52 d~Vv~~ea~Gi~la~~lA~~Lg~p~v~vRK~~k~~~~~~~~~~~~~s~~~~~~~~l~i~~~~l~~G~rVLIVDDvvtTG- 130 (191)
T TIGR01744 52 TKIVTIEASGIAPAIMTGLKLGVPVVFARKKKPLTLTDNLLTASVHSFTKQTTSTVAVSGEFLSDQDRVLIIDDFLANG- 130 (191)
T ss_pred CEEEEEccccHHHHHHHHHHHCCCEEEEEeCCCCCCCCcceEEEEEEeecCccEEEEEEHHhCCCcCEEEEEEehhccC-
Confidence 34343456677999999999999877665442 22 1233333433 23 789999986643221
Q ss_pred hHHHHHHHHHHHHHhcCCC
Q 018472 160 ENLMELLIMIDACRRASAK 178 (355)
Q Consensus 160 d~lmELll~idalr~~~a~ 178 (355)
. -+.-+++.++++|++
T Consensus 131 g---T~~a~~~ll~~aGa~ 146 (191)
T TIGR01744 131 Q---AAHGLVDIAKQAGAK 146 (191)
T ss_pred h---HHHHHHHHHHHCCCE
Confidence 1 245677888899985
No 177
>COG0771 MurD UDP-N-acetylmuramoylalanine-D-glutamate ligase [Cell envelope biogenesis, outer membrane]
Probab=43.41 E-value=2.9e+02 Score=28.92 Aligned_cols=164 Identities=18% Similarity=0.269 Sum_probs=96.0
Q ss_pred CCCEEEEECCCCHHHHHHHHHHhCCceeceeeeecCCC-------ceEEEe--c----cCcCCCcEEEEccCCCCchhHH
Q 018472 96 NNRIKLFSGTANPALSQEIACYMGVELGKINIKRFADG-------EIYVQL--Q----ESVRGCDVYLVQPTCPPANENL 162 (355)
Q Consensus 96 ~~~~~ifsg~~~~~LA~~Ia~~Lg~~l~~~~~~~FpDG-------E~~v~i--~----~~VrG~dV~iiqs~~~p~nd~l 162 (355)
++++.|+..--+-.=+.+.-.+.|.++.-...+.++.+ +..+.+ . +.....|++|+.+.-++.+.
T Consensus 7 ~~kv~V~GLG~sG~a~a~~L~~~G~~v~v~D~~~~~~~~~~~~~~~~~i~~~~g~~~~~~~~~~d~vV~SPGi~~~~p-- 84 (448)
T COG0771 7 GKKVLVLGLGKSGLAAARFLLKLGAEVTVSDDRPAPEGLAAQPLLLEGIEVELGSHDDEDLAEFDLVVKSPGIPPTHP-- 84 (448)
T ss_pred CCEEEEEecccccHHHHHHHHHCCCeEEEEcCCCCccchhhhhhhccCceeecCccchhccccCCEEEECCCCCCCCH--
Confidence 45677887544444455556667888887777777732 122222 1 23444688888776555444
Q ss_pred HHHHHHHHHHHhcCCCeEEEEeeCcccccccccc-----CCCCcchHHHHHHHHHHhCC---------------------
Q 018472 163 MELLIMIDACRRASAKNITAVIPYFGYARADRKT-----QGRESIAAKLVANLITEAGA--------------------- 216 (355)
Q Consensus 163 mELll~idalr~~~a~~ItlViPY~~YaRqDr~~-----~~ge~isak~vA~lL~~~G~--------------------- 216 (355)
++.+++..|+.=++ -|--|..-+-..++ .+|-+-+..+++.||++.|.
T Consensus 85 -----~v~~A~~~gi~i~~-dieL~~r~~~~~p~vaITGTNGKTTTTsli~~~l~~~G~~~~lgGNIG~p~l~~~~~~~~ 158 (448)
T COG0771 85 -----LVEAAKAAGIEIIG-DIELFYRLSGEAPIVAITGTNGKTTTTSLIAHLLKAAGLDALLGGNIGTPALELLEQAEP 158 (448)
T ss_pred -----HHHHHHHcCCcEEe-HHHHHHHhcCCCCEEEEECCCchHHHHHHHHHHHHhcCCCceeccccCccHHHhhcccCC
Confidence 56677777875333 22222221111211 46788889999999998764
Q ss_pred CEEEEccCCchhhhcc----------cCCccccccchHHHHHHHHhhc--CCCCC-eEEEecCC
Q 018472 217 DRVLACDLHSGQSMGY----------FDIPVDHVYCQPVILDYLASKT--VSSND-LVVVSPDV 267 (355)
Q Consensus 217 d~VitvDlHs~~~~~~----------F~ip~~~l~a~~~La~~L~~~~--~~~~~-~vVVspd~ 267 (355)
.-++.+++.|-|.... .|+-.||++....+-+|+..+. +.... ..|+.-|.
T Consensus 159 ~d~~VlElSSfQL~~~~~~~P~iavilNi~~DHLD~H~s~e~Y~~aK~~i~~~~~~~~Vin~dd 222 (448)
T COG0771 159 ADVYVLELSSFQLETTSSLRPEIAVILNISEDHLDRHGSMENYAAAKLRILEGQTEVAVINADD 222 (448)
T ss_pred CCEEEEEccccccccCccCCccEEEEecCCHHHhhhccCHHHHHHHHHHHHcCCccEEEEeCCc
Confidence 2267788888776532 2455577776666777775532 22223 55665554
No 178
>PRK07847 amidophosphoribosyltransferase; Provisional
Probab=43.38 E-value=1.1e+02 Score=32.37 Aligned_cols=76 Identities=20% Similarity=0.284 Sum_probs=49.3
Q ss_pred CCCHHHHHHHHHHhCCceeceeeee------c--CC---CceEEEe-----ccCcCCCcEEEEccCCCCchhHHHHHHHH
Q 018472 105 TANPALSQEIACYMGVELGKINIKR------F--AD---GEIYVQL-----QESVRGCDVYLVQPTCPPANENLMELLIM 168 (355)
Q Consensus 105 ~~~~~LA~~Ia~~Lg~~l~~~~~~~------F--pD---GE~~v~i-----~~~VrG~dV~iiqs~~~p~nd~lmELll~ 168 (355)
.+....|..+|+.+|+++...-++. | |. .+..+++ .+.+.||.|+||...... -.. +.-+
T Consensus 311 ~sG~~~A~g~a~~~gip~~~~l~kn~~~grtfi~~~q~~r~~~~r~k~~~~~~~~~gk~vllVDD~itt--G~T--~~~~ 386 (510)
T PRK07847 311 ESGTPAAVGYAQESGIPFGQGLVKNAYVGRTFIQPSQTIRQLGIRLKLNPLREVIRGKRLVVVDDSIVR--GNT--QRAL 386 (510)
T ss_pred CchHHHHHHHHHHhCCChhhceEeecccccCccCcchhhhhhceeeecCccccccCCCEEEEEecccCc--hHH--HHHH
Confidence 3456889999999999986643332 1 11 1223333 344688999998654321 122 3467
Q ss_pred HHHHHhcCCCeEEEEe
Q 018472 169 IDACRRASAKNITAVI 184 (355)
Q Consensus 169 idalr~~~a~~ItlVi 184 (355)
+..||++||++|.+-|
T Consensus 387 ~~~L~~~ga~~v~~ri 402 (510)
T PRK07847 387 VRMLREAGAAEVHVRI 402 (510)
T ss_pred HHHHHHcCCCEEEEEE
Confidence 8889999999999876
No 179
>PRK04284 ornithine carbamoyltransferase; Provisional
Probab=43.31 E-value=2.9e+02 Score=27.57 Aligned_cols=39 Identities=13% Similarity=-0.029 Sum_probs=28.5
Q ss_pred ecCCCCCEEEEEeCcccchHHHHHHHHHHHHcCCCEEEEEEE
Q 018472 304 IGDVKGKVAVMVDDMIDTAGTIAKGAALLHQEGAREVYACCT 345 (355)
Q Consensus 304 ~gdVkGK~VLIVDDIIdTG~Tl~~aa~~Lk~~GA~~V~v~~t 345 (355)
.|+++|++|.+|-|+ . .++....+.++...|+ .|.+++.
T Consensus 150 ~g~l~g~kia~vGD~-~-~~v~~Sl~~~~~~~g~-~v~~~~P 188 (332)
T PRK04284 150 KKPYKDIKFTYVGDG-R-NNVANALMQGAAIMGM-DFHLVCP 188 (332)
T ss_pred cCCcCCcEEEEecCC-C-cchHHHHHHHHHHcCC-EEEEECC
Confidence 367899999999997 2 2577777777777887 4555554
No 180
>PRK06756 flavodoxin; Provisional
Probab=42.54 E-value=1.4e+02 Score=25.39 Aligned_cols=109 Identities=15% Similarity=0.218 Sum_probs=52.2
Q ss_pred EEEEECCC---CHHHHHHHHHHhCCceeceeeeecCCCceEEEeccCcCCCcEEEEccCCC---CchhHHHHHHHHHHHH
Q 018472 99 IKLFSGTA---NPALSQEIACYMGVELGKINIKRFADGEIYVQLQESVRGCDVYLVQPTCP---PANENLMELLIMIDAC 172 (355)
Q Consensus 99 ~~ifsg~~---~~~LA~~Ia~~Lg~~l~~~~~~~FpDGE~~v~i~~~VrG~dV~iiqs~~~---p~nd~lmELll~idal 172 (355)
+.|+.+|. +..+|+.|++.+.-.-..+++....+-.. ..++.+.|.+++.+-.. ...+++.+++ +.+
T Consensus 4 v~IiY~S~tGnTe~vA~~ia~~l~~~g~~v~~~~~~~~~~----~~~~~~~d~vi~gspt~~~g~~p~~~~~fl---~~l 76 (148)
T PRK06756 4 LVMIFASMSGNTEEMADHIAGVIRETENEIEVIDIMDSPE----ASILEQYDGIILGAYTWGDGDLPDDFLDFY---DAM 76 (148)
T ss_pred EEEEEECCCchHHHHHHHHHHHHhhcCCeEEEeehhccCC----HHHHhcCCeEEEEeCCCCCCCCcHHHHHHH---HHH
Confidence 44444433 45899999998843222333333322110 23455678887776321 1223444443 333
Q ss_pred HhcCCC-eEEEEeeCccccccccccCCCCcchHHHHHHHHHHhCCCEEE
Q 018472 173 RRASAK-NITAVIPYFGYARADRKTQGRESIAAKLVANLITEAGADRVL 220 (355)
Q Consensus 173 r~~~a~-~ItlViPY~~YaRqDr~~~~ge~isak~vA~lL~~~G~d~Vi 220 (355)
++...+ +..++ |.-.|... +.-.-..+.+.+.|...|+..|.
T Consensus 77 ~~~~l~~k~~~~-----fgt~~~~y-~~~~~a~~~l~~~l~~~g~~~v~ 119 (148)
T PRK06756 77 DSIDLTGKKAAV-----FGSCDSAY-PKYGVAVDILIEKLQERGAAVVL 119 (148)
T ss_pred hcCCCCCCEEEE-----EeCCCCch-HHHHHHHHHHHHHHHHCCCEEcC
Confidence 332222 22222 22222211 11123468888999988876544
No 181
>PRK14805 ornithine carbamoyltransferase; Provisional
Probab=40.77 E-value=3.2e+02 Score=26.85 Aligned_cols=147 Identities=16% Similarity=0.072 Sum_probs=75.2
Q ss_pred CcCCCcEEEEccCCCCchhHHHHHHHHHHHHHhcCCCeEEEEeeCccccccccccCCCCcchHHHHHHHHHHhCCCEEEE
Q 018472 142 SVRGCDVYLVQPTCPPANENLMELLIMIDACRRASAKNITAVIPYFGYARADRKTQGRESIAAKLVANLITEAGADRVLA 221 (355)
Q Consensus 142 ~VrG~dV~iiqs~~~p~nd~lmELll~idalr~~~a~~ItlViPY~~YaRqDr~~~~ge~isak~vA~lL~~~G~d~Vit 221 (355)
..+|+.+..+ +..|.. =--+-+--|+++.|++-|.+ . . ++-....||++ +..++.|+.+ +|-|+.
T Consensus 35 ~L~gk~~~~l--F~epST---RTR~SFE~A~~~LGg~~i~l--~---~--~~ss~~kgEsl--~Dt~~vls~y-~D~ivi 99 (302)
T PRK14805 35 ALAGKSVVML--FEKPSL---RTRVSFDIGINKLGGHCLYL--D---Q--QNGALGKRESV--ADFAANLSCW-ADAIVA 99 (302)
T ss_pred cCCCCEEEEE--ecCCCc---hHHHHHHHHHHHcCCcEEEC--C---C--CcCcCCCCcCH--HHHHHHHHHh-CCEEEE
Confidence 3567766543 222221 12244556788888866652 1 1 22233456765 6678888877 777775
Q ss_pred ccCCchhhhcccCCccccccchHHHHHHHHhhcCCCCCeEEEecCCChhHHHHHHHHHcCCCCEEEEEEeecCCCeeEEE
Q 018472 222 CDLHSGQSMGYFDIPVDHVYCQPVILDYLASKTVSSNDLVVVSPDVGGVARARAFAKKLSDAPLAIVDKRRHGHNVAEVM 301 (355)
Q Consensus 222 vDlHs~~~~~~F~ip~~~l~a~~~La~~L~~~~~~~~~~vVVspd~Ggv~rA~~lA~~L~~~p~~~v~K~R~~~~~~e~~ 301 (355)
=. + ....++.+.+. .+-+||=+ ..+...-.+.+++.+- + .
T Consensus 100 R~------------~------~~~~~~~~a~~---~~vPVINa-~~~~~HPtQaL~Dl~T-i-----------------~ 139 (302)
T PRK14805 100 RV------------F------SHSTIEQLAEH---GSVPVINA-LCDLYHPCQALADFLT-L-----------------A 139 (302)
T ss_pred eC------------C------ChhHHHHHHHh---CCCCEEEC-CCCCCChHHHHHHHHH-H-----------------H
Confidence 11 0 11122222221 12334433 3345666677766553 1 0
Q ss_pred eeecCCCCCEEEEEeCcccchHHHHHHHHHHHHcCCCEEEEEEEcc
Q 018472 302 NLIGDVKGKVAVMVDDMIDTAGTIAKGAALLHQEGAREVYACCTHA 347 (355)
Q Consensus 302 ~l~gdVkGK~VLIVDDIIdTG~Tl~~aa~~Lk~~GA~~V~v~~tHg 347 (355)
...|+++|++|.+|=|.--+ ....+..+...|+ +|.+++.=+
T Consensus 140 e~~g~l~g~kva~vGD~~~v---~~S~~~~~~~~g~-~v~~~~P~~ 181 (302)
T PRK14805 140 EQFGDVSKVKLAYVGDGNNV---THSLMYGAAILGA-TMTVICPPG 181 (302)
T ss_pred HHhCCcCCcEEEEEcCCCcc---HHHHHHHHHHcCC-EEEEECCch
Confidence 12356778888888875433 3444445555676 455555433
No 182
>cd05008 SIS_GlmS_GlmD_1 SIS (Sugar ISomerase) domain repeat 1 found in Glucosamine 6-phosphate synthase (GlmS) and Glucosamine-6-phosphate deaminase (GlmD). The SIS domain is found in many phosphosugar isomerases and phosphosugar binding proteins. GlmS contains a N-terminal glutaminase domain and two C-terminal SIS domains and catalyzes the first step in hexosamine metabolism, converting fructose 6-phosphate into glucosamine 6-phosphate using glutamine as nitrogen source. The glutaminase domain hydrolyzes glutamine to glutamate and ammonia. Ammonia is transferred through a channel to the isomerase domain for glucosamine 6-phosphate synthesis. The end product of the pathway is N-acetylglucosamine, which plays multiple roles in eukaryotic cells including being a building block of bacterial and fungal cell walls. In the absence of glutamine, GlmS catalyzes the isomerization of fructose 6-phosphate into glucose 6- phosphate (PGI-like activity). Glucosamine-6-phosphate deaminase (GlmD) cont
Probab=40.68 E-value=1.1e+02 Score=24.85 Aligned_cols=77 Identities=9% Similarity=0.040 Sum_probs=44.1
Q ss_pred EEEEECCCCHHHHHHHHHHhCCceeceeeeecCCCceEEEeccCcCCCcEEEEccCCCCchhHHHHHHHHHHHHHhcCCC
Q 018472 99 IKLFSGTANPALSQEIACYMGVELGKINIKRFADGEIYVQLQESVRGCDVYLVQPTCPPANENLMELLIMIDACRRASAK 178 (355)
Q Consensus 99 ~~ifsg~~~~~LA~~Ia~~Lg~~l~~~~~~~FpDGE~~v~i~~~VrG~dV~iiqs~~~p~nd~lmELll~idalr~~~a~ 178 (355)
+.+++.-++...|...+.+|..-. .....-++..|...... .+..+|++|+=|.+.. +. |++-+++.+|+.|++
T Consensus 2 I~i~G~G~S~~~a~~~~~~l~~~~-~~~~~~~~~~~~~~~~~-~~~~~d~~I~iS~sG~-t~---e~~~~~~~a~~~g~~ 75 (126)
T cd05008 2 ILIVGCGTSYHAALVAKYLLERLA-GIPVEVEAASEFRYRRP-LLDEDTLVIAISQSGE-TA---DTLAALRLAKEKGAK 75 (126)
T ss_pred EEEEEccHHHHHHHHHHHHHHHhc-CCceEEEehhHhhhcCC-CCCCCcEEEEEeCCcC-CH---HHHHHHHHHHHcCCe
Confidence 455554455566777776655322 11222233445443332 3556788888776543 23 567788889999986
Q ss_pred eEE
Q 018472 179 NIT 181 (355)
Q Consensus 179 ~It 181 (355)
-|.
T Consensus 76 vi~ 78 (126)
T cd05008 76 TVA 78 (126)
T ss_pred EEE
Confidence 543
No 183
>PRK15482 transcriptional regulator MurR; Provisional
Probab=40.58 E-value=52 Score=31.42 Aligned_cols=80 Identities=14% Similarity=0.229 Sum_probs=50.7
Q ss_pred CCCEEEEECCCCHHHHHHHHHHhCCceeceeeeecCCCceEEEeccCcCCCcEEEEccCCCCchhHHHHHHHHHHHHHhc
Q 018472 96 NNRIKLFSGTANPALSQEIACYMGVELGKINIKRFADGEIYVQLQESVRGCDVYLVQPTCPPANENLMELLIMIDACRRA 175 (355)
Q Consensus 96 ~~~~~ifsg~~~~~LA~~Ia~~Lg~~l~~~~~~~FpDGE~~v~i~~~VrG~dV~iiqs~~~p~nd~lmELll~idalr~~ 175 (355)
.+++.|++...+..+|+.++.+|.. ++. .+.-+.|++........+...||+|+=|.+.. +. |++-+++.+|+.
T Consensus 135 A~~I~i~G~G~S~~~A~~l~~~l~~-~g~-~~~~~~d~~~~~~~~~~~~~~Dv~i~iS~sg~-t~---~~~~~~~~a~~~ 208 (285)
T PRK15482 135 APFIQITGLGGSALVGRDLSFKLMK-IGY-RVACEADTHVQATVSQALKKGDVQIAISYSGS-KK---EIVLCAEAARKQ 208 (285)
T ss_pred CCeeEEEEeChhHHHHHHHHHHHHh-CCC-eeEEeccHhHHHHHHhcCCCCCEEEEEeCCCC-CH---HHHHHHHHHHHC
Confidence 4568888877788899988888642 221 22233455433222345556799998887543 33 456677778999
Q ss_pred CCCeEE
Q 018472 176 SAKNIT 181 (355)
Q Consensus 176 ~a~~It 181 (355)
|++-|.
T Consensus 209 g~~iI~ 214 (285)
T PRK15482 209 GATVIA 214 (285)
T ss_pred CCEEEE
Confidence 986554
No 184
>TIGR01743 purR_Bsub pur operon repressor, Bacillus subtilis type. This model represents the puring operon repressor PurR of low-GC Gram-positive bacteria. This homodimeric repressor contains a large region homologous to phosphoribosyltransferases and is inhibited by 5-phosphoribosyl 1-pyrophosphate.
Probab=40.09 E-value=2.4e+02 Score=27.37 Aligned_cols=77 Identities=17% Similarity=0.176 Sum_probs=44.9
Q ss_pred CEEEEECCCCHHHHHHHHHHhCCceeceeeeec-CCCce--------------EEEec-cC-cCCCcEEEEccCCCCchh
Q 018472 98 RIKLFSGTANPALSQEIACYMGVELGKINIKRF-ADGEI--------------YVQLQ-ES-VRGCDVYLVQPTCPPANE 160 (355)
Q Consensus 98 ~~~ifsg~~~~~LA~~Ia~~Lg~~l~~~~~~~F-pDGE~--------------~v~i~-~~-VrG~dV~iiqs~~~p~nd 160 (355)
...+=.....-.||..+|.+||+++.-+.-..- ..|+. ...+. .. .+|++|+||...-.-- .
T Consensus 130 D~VvgvetkGIpLA~avA~~L~vp~vivRK~~K~t~g~~vs~nY~sgs~~~ie~m~l~k~~l~~G~rVLIVDDv~~TG-g 208 (268)
T TIGR01743 130 DAVMTVATKGIPLAYAVASVLNVPLVIVRKDSKVTEGSTVSINYVSGSSNRIQTMSLAKRSLKTGSKVLIIDDFMKAG-G 208 (268)
T ss_pred CEEEEEccchHHHHHHHHHHHCCCEEEEEECCCCCCCCcEEEEEEcccCccceEEEEehhhCCCcCEEEEEeeecccC-H
Confidence 343333456779999999999999765543321 12321 11111 12 3688899886543221 1
Q ss_pred HHHHHHHHHHHHHhcCCC
Q 018472 161 NLMELLIMIDACRRASAK 178 (355)
Q Consensus 161 ~lmELll~idalr~~~a~ 178 (355)
-+.-+++.++++|++
T Consensus 209 ---Ti~a~i~Ll~e~Ga~ 223 (268)
T TIGR01743 209 ---TINGMINLLDEFDAE 223 (268)
T ss_pred ---HHHHHHHHHHHCCCE
Confidence 245667778888884
No 185
>PRK09271 flavodoxin; Provisional
Probab=39.37 E-value=1.9e+02 Score=25.14 Aligned_cols=46 Identities=11% Similarity=0.086 Sum_probs=28.3
Q ss_pred CHHHHHHHHHHhCCceeceeeeecCCCceEEEeccCcCCCcEEEEcc
Q 018472 107 NPALSQEIACYMGVELGKINIKRFADGEIYVQLQESVRGCDVYLVQP 153 (355)
Q Consensus 107 ~~~LA~~Ia~~Lg~~l~~~~~~~FpDGE~~v~i~~~VrG~dV~iiqs 153 (355)
+..+|+.|++.|...-..+++...++.++. .+..++...+++++.+
T Consensus 14 Te~~A~~ia~~l~~~g~~v~~~~~~~~~~~-~~~~~~~~~d~vilgt 59 (160)
T PRK09271 14 TREVAREIEERCEEAGHEVDWVETDVQTLA-EYPLDPEDYDLYLLGT 59 (160)
T ss_pred HHHHHHHHHHHHHhCCCeeEEEeccccccc-ccccCcccCCEEEEEC
Confidence 468999999998654445555555554422 1133444568888877
No 186
>cd01518 RHOD_YceA Member of the Rhodanese Homology Domain superfamily. This CD includes Escherichia coli YceA, Bacillus subtilis YbfQ, and similar uncharacterized proteins.
Probab=38.98 E-value=58 Score=25.67 Aligned_cols=33 Identities=30% Similarity=0.386 Sum_probs=26.6
Q ss_pred CCCEEEEEeCcccchHHHHHHHHHHHHcCCCEEEEE
Q 018472 308 KGKVAVMVDDMIDTAGTIAKGAALLHQEGAREVYAC 343 (355)
Q Consensus 308 kGK~VLIVDDIIdTG~Tl~~aa~~Lk~~GA~~V~v~ 343 (355)
+++.++++++ +|..-..++..|++.|.+.|+.+
T Consensus 60 ~~~~ivvyC~---~G~rs~~a~~~L~~~G~~~v~~l 92 (101)
T cd01518 60 KGKKVLMYCT---GGIRCEKASAYLKERGFKNVYQL 92 (101)
T ss_pred CCCEEEEECC---CchhHHHHHHHHHHhCCcceeee
Confidence 5678888864 78888889999999999877643
No 187
>cd05013 SIS_RpiR RpiR-like protein. RpiR contains a SIS (Sugar ISomerase) domain, which is found in many phosphosugar isomerases and phosphosugar binding proteins. In E. coli, rpiR negatively regulates the expression of rpiB gene. Both rpiB and rpiA are ribose phosphate isomerases that catalyze the reversible reactions of ribose 5-phosphate into ribulose 5-phosphate.
Probab=38.85 E-value=71 Score=25.89 Aligned_cols=82 Identities=17% Similarity=0.187 Sum_probs=49.9
Q ss_pred CCEEEEECCCCHHHHHHHHHHhCCceeceeeeecCCCceEEEeccCcCCCcEEEEccCCCCchhHHHHHHHHHHHHHhcC
Q 018472 97 NRIKLFSGTANPALSQEIACYMGVELGKINIKRFADGEIYVQLQESVRGCDVYLVQPTCPPANENLMELLIMIDACRRAS 176 (355)
Q Consensus 97 ~~~~ifsg~~~~~LA~~Ia~~Lg~~l~~~~~~~FpDGE~~v~i~~~VrG~dV~iiqs~~~p~nd~lmELll~idalr~~~ 176 (355)
+.+.+++...+..+|...+..|.. +++ .....++.+........+...|++|+=|.... + .+++-+++.+++.|
T Consensus 14 ~~i~i~g~g~s~~~a~~~~~~l~~-~~~-~~~~~~~~~~~~~~~~~~~~~~~~i~iS~~g~-~---~~~~~~~~~a~~~g 87 (139)
T cd05013 14 RRIYIFGVGSSGLVAEYLAYKLLR-LGK-PVVLLSDPHLQLMSAANLTPGDVVIAISFSGE-T---KETVEAAEIAKERG 87 (139)
T ss_pred CEEEEEEcCchHHHHHHHHHHHHH-cCC-ceEEecCHHHHHHHHHcCCCCCEEEEEeCCCC-C---HHHHHHHHHHHHcC
Confidence 567888777778889988888753 333 33344555543332233444677877776533 3 34566667888888
Q ss_pred CCeEEEEee
Q 018472 177 AKNITAVIP 185 (355)
Q Consensus 177 a~~ItlViP 185 (355)
++- .++-.
T Consensus 88 ~~i-v~iT~ 95 (139)
T cd05013 88 AKV-IAITD 95 (139)
T ss_pred CeE-EEEcC
Confidence 754 34443
No 188
>cd01523 RHOD_Lact_B Member of the Rhodanese Homology Domain superfamily. This CD includes predicted proteins with rhodanese-like domains found N-terminal of the metallo-beta-lactamase domain.
Probab=38.33 E-value=48 Score=26.03 Aligned_cols=30 Identities=20% Similarity=0.220 Sum_probs=24.1
Q ss_pred CCCEEEEEeCcccchHHHHHHHHHHHHcCCCEEE
Q 018472 308 KGKVAVMVDDMIDTAGTIAKGAALLHQEGAREVY 341 (355)
Q Consensus 308 kGK~VLIVDDIIdTG~Tl~~aa~~Lk~~GA~~V~ 341 (355)
+++.++++ |.+|..-..+++.|++.|-. ++
T Consensus 60 ~~~~ivv~---C~~G~rs~~aa~~L~~~G~~-~~ 89 (100)
T cd01523 60 DDQEVTVI---CAKEGSSQFVAELLAERGYD-VD 89 (100)
T ss_pred CCCeEEEE---cCCCCcHHHHHHHHHHcCce-eE
Confidence 45677775 77898989999999999987 44
No 189
>PRK02472 murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase; Provisional
Probab=37.82 E-value=2.1e+02 Score=28.86 Aligned_cols=147 Identities=12% Similarity=0.127 Sum_probs=73.4
Q ss_pred CHHHHHHHHHHhCCceecee--eeecCCCceEEEeccCcCCCcEEEEccCCCCchhHHHHHHHHHHHHHhcCCCeEEEEe
Q 018472 107 NPALSQEIACYMGVELGKIN--IKRFADGEIYVQLQESVRGCDVYLVQPTCPPANENLMELLIMIDACRRASAKNITAVI 184 (355)
Q Consensus 107 ~~~LA~~Ia~~Lg~~l~~~~--~~~FpDGE~~v~i~~~VrG~dV~iiqs~~~p~nd~lmELll~idalr~~~a~~ItlVi 184 (355)
|-..|-.++..||++...+. +..|.--+-+.++...+.| -.+|..+ .+.|-. . +..|++.. .+++++|+
T Consensus 279 Na~aAia~~~~lgi~~~~i~~~L~~f~~~~~R~e~~~~~~g-~~vi~D~--~a~N~~--s---~~~al~~~-~~~ii~I~ 349 (447)
T PRK02472 279 NALAAIAAAKLLGVSNEAIREVLSTFSGVKHRLQYVGTIDG-RKFYNDS--KATNIL--A---TQKALSGF-NQPVVLLA 349 (447)
T ss_pred HHHHHHHHHHHcCCCHHHHHHHHHhCCCCCCcceEEEEECC-eEEEECC--CCCCHH--H---HHHHHHhC-CCCEEEEE
Confidence 44677788888998876655 5666544444444333323 2344443 222322 2 23455544 35677775
Q ss_pred eCccccccccccCCCCcchHHHHHHHHHHhCCCEEEEccCCchhhhccc---CCccccccchHHHHHHHHhhcCCCCCeE
Q 018472 185 PYFGYARADRKTQGRESIAAKLVANLITEAGADRVLACDLHSGQSMGYF---DIPVDHVYCQPVILDYLASKTVSSNDLV 261 (355)
Q Consensus 185 PY~~YaRqDr~~~~ge~isak~vA~lL~~~G~d~VitvDlHs~~~~~~F---~ip~~~l~a~~~La~~L~~~~~~~~~~v 261 (355)
- ++.|. + .-..+++.|.. +|.|+.+..+...+...+ +.+...........+.+.+.. ..++.+
T Consensus 350 g--~~~~~-~--------~~~~l~~~l~~--~~~v~~~G~~~~~l~~~~~~~~~~~~~~~~~~~a~~~~~~~~-~~~d~V 415 (447)
T PRK02472 350 G--GLDRG-N--------EFDELVPYLKN--VKAMVVFGETAEKLARAAEKAGITVVEADNVEDAVPKAYELS-EPGDVI 415 (447)
T ss_pred C--CCCCC-C--------CHHHHHHHHhc--cCEEEEECCCHHHHHHHHHhCCCceEEcCCHHHHHHHHHHhC-CCCCEE
Confidence 4 23221 1 12445666654 799998877665443222 111111222333444443322 235678
Q ss_pred EEecCCChhHHHHHH
Q 018472 262 VVSPDVGGVARARAF 276 (355)
Q Consensus 262 VVspd~Ggv~rA~~l 276 (355)
+++|...+..+-+.+
T Consensus 416 Lls~a~~s~d~f~~~ 430 (447)
T PRK02472 416 LLSPACASWDQYKTF 430 (447)
T ss_pred EeCccccccccccCH
Confidence 888765554443333
No 190
>PRK11543 gutQ D-arabinose 5-phosphate isomerase; Provisional
Probab=36.94 E-value=1.2e+02 Score=29.24 Aligned_cols=81 Identities=14% Similarity=0.072 Sum_probs=50.9
Q ss_pred CCCEEEEECCCCHHHHHHHHHHhCCceeceeeeecCCCceEEEeccCcCCCcEEEEccCCCCchhHHHHHHHHHHHHHhc
Q 018472 96 NNRIKLFSGTANPALSQEIACYMGVELGKINIKRFADGEIYVQLQESVRGCDVYLVQPTCPPANENLMELLIMIDACRRA 175 (355)
Q Consensus 96 ~~~~~ifsg~~~~~LA~~Ia~~Lg~~l~~~~~~~FpDGE~~v~i~~~VrG~dV~iiqs~~~p~nd~lmELll~idalr~~ 175 (355)
.+++.+++.-.+..+|+.++.+|.. ++.... -+.|.+...........+|++|+=|.+.. --|++-++..+|+.
T Consensus 42 ~~~I~i~G~G~S~~~A~~~~~~l~~-~g~~~~-~~~~~~~~~~~~~~~~~~d~~i~iS~sG~----t~~~~~~~~~ak~~ 115 (321)
T PRK11543 42 EGKVVVSGIGKSGHIGKKIAATLAS-TGTPAF-FVHPAEALHGDLGMIESRDVMLFISYSGG----AKELDLIIPRLEDK 115 (321)
T ss_pred CCcEEEEecChhHHHHHHHHHHHHc-CCCcee-ecChHHHhhCCcCccCCCCEEEEEeCCCC----cHHHHHHHHHHHHc
Confidence 4568888877788899999988743 333221 12233322222234555799998887543 33567778889999
Q ss_pred CCCeEEE
Q 018472 176 SAKNITA 182 (355)
Q Consensus 176 ~a~~Itl 182 (355)
|++-|.+
T Consensus 116 g~~vI~i 122 (321)
T PRK11543 116 SIALLAM 122 (321)
T ss_pred CCeEEEE
Confidence 9865544
No 191
>TIGR01809 Shik-DH-AROM shikimate-5-dehydrogenase, fungal AROM-type. This model represents a clade of shikimate-5-dehydrogenases found in Corynebacterium, Mycobacteria and fungi. The fungal sequences are pentafunctional proteins known as AroM which contain the central five seven steps in the chorismate biosynthesis pathway. The Corynebacterium and Mycobacterial sequences represent the sole shikimate-5-dehydrogenases in species which otherwise have every enzyme of the chorismate biosynthesis pathway.
Probab=36.68 E-value=65 Score=31.05 Aligned_cols=35 Identities=14% Similarity=0.210 Sum_probs=30.3
Q ss_pred CCCCCEEEEEeCcccchHHHHHHHHHHHHcCCCEEEEEE
Q 018472 306 DVKGKVAVMVDDMIDTAGTIAKGAALLHQEGAREVYACC 344 (355)
Q Consensus 306 dVkGK~VLIVDDIIdTG~Tl~~aa~~Lk~~GA~~V~v~~ 344 (355)
+++||+|+|+ -+|++-..++..|.+.|+++|+++.
T Consensus 122 ~~~~k~vlvl----GaGGaarai~~aL~~~G~~~i~I~n 156 (282)
T TIGR01809 122 PLAGFRGLVI----GAGGTSRAAVYALASLGVTDITVIN 156 (282)
T ss_pred ccCCceEEEE----cCcHHHHHHHHHHHHcCCCeEEEEe
Confidence 4678999876 5799999999999999999998864
No 192
>KOG1503 consensus Phosphoribosylpyrophosphate synthetase-associated protein [Amino acid transport and metabolism; Nucleotide transport and metabolism]
Probab=36.57 E-value=2.6e+02 Score=27.21 Aligned_cols=81 Identities=12% Similarity=0.101 Sum_probs=46.3
Q ss_pred HHHHHHHHHcCCCCEEEEEEeecCCCeeEEEeeecCCCCCEEEEEeCcccch----HHHHHHHHHHHHcCCCEEEEEEEc
Q 018472 271 ARARAFAKKLSDAPLAIVDKRRHGHNVAEVMNLIGDVKGKVAVMVDDMIDTA----GTIAKGAALLHQEGAREVYACCTH 346 (355)
Q Consensus 271 ~rA~~lA~~L~~~p~~~v~K~R~~~~~~e~~~l~gdVkGK~VLIVDDIIdTG----~Tl~~aa~~Lk~~GA~~V~v~~tH 346 (355)
.+|+.++++|+ +.+.-...... .|.....++...|+||+|.|+.-+--.- --+.-.+=++|..-|+.|..+...
T Consensus 19 elak~vaerlg-i~~g~~~vy~~-tnret~vei~~svrgkdvfiiqt~skdvn~~vmellim~yackts~aksiigvipy 96 (354)
T KOG1503|consen 19 ELAKMVAERLG-IELGKATVYQK-TNRETRVEIKESVRGKDVFIIQTGSKDVNNDVMELLIMAYACKTSCAKSIIGVIPY 96 (354)
T ss_pred HHHHHHHHHhc-ccccceEEEec-CCCceEEEhhhhccCceEEEEEecCcccchHHHHHHHHHHHHhhhhhhceEEEeec
Confidence 67888888886 55432211111 1111123555679999999987443222 223334456677778888777655
Q ss_pred ccccCCC
Q 018472 347 AVFRLDY 353 (355)
Q Consensus 347 glfs~~a 353 (355)
--+|+-+
T Consensus 97 ~pyskqc 103 (354)
T KOG1503|consen 97 LPYSKQC 103 (354)
T ss_pred Cccchhh
Confidence 5444443
No 193
>cd04814 PA_M28_1 PA_M28_1: Protease-associated (PA) domain, peptidase family M28, subfamily-1. A subfamily of PA-domain containing proteins belonging to the peptidase family M28. Family M28 contains aminopeptidases and carboxypeptidases, and has co-catalytic zinc ions. The PA domain is an insert domain in a diverse fraction of proteases. The significance of the PA domain to many of the proteins in which it is inserted is undetermined. It may be a protein-protein interaction domain. At peptidase active sites, the PA domain may participate in substrate binding and/or promoting conformational changes, which influence the stability and accessibility of the site to substrate. Proteins into which the PA domain is inserted include the following members of the peptidase family M28: i) prostate-specific membrane antigen (PSMA), ii) yeast aminopeptidase Y, and ii) human TfR (transferrin receptor)1 and human TfR2. The proteins listed above belong to other subfamilies, relatively little is known a
Probab=36.50 E-value=65 Score=28.32 Aligned_cols=40 Identities=28% Similarity=0.273 Sum_probs=29.2
Q ss_pred CCCCCEEEEEeCccc-------chH-------HHHHHHHHHHHcCCCEEEEEEE
Q 018472 306 DVKGKVAVMVDDMID-------TAG-------TIAKGAALLHQEGAREVYACCT 345 (355)
Q Consensus 306 dVkGK~VLIVDDIId-------TG~-------Tl~~aa~~Lk~~GA~~V~v~~t 345 (355)
||+||-|||..+-.+ +|+ ++..=.+.++++||.-|.++.+
T Consensus 45 DVkGKIVlv~~g~P~~~~~~~~~~~~~~~~~~~~~~K~~~A~~~GA~gvIii~~ 98 (142)
T cd04814 45 DVKGKVVVVLRNDPQGEPGAGDFGGKAMTYYGRWTYKYEEAARHGAAGVLIVHE 98 (142)
T ss_pred CCCCcEEEEEcCCCCcccccccccccccccccCHHHHHHHHHHCCCcEEEEEeC
Confidence 899999999876552 111 5666677888999998877653
No 194
>PRK06031 phosphoribosyltransferase; Provisional
Probab=36.26 E-value=2.9e+02 Score=26.14 Aligned_cols=79 Identities=11% Similarity=0.109 Sum_probs=43.3
Q ss_pred CEEEEECCCCHHHHHHHHHHhCCc-eecee-eeecC---------------CCceEEEec----cCcCCCcEEEEccCCC
Q 018472 98 RIKLFSGTANPALSQEIACYMGVE-LGKIN-IKRFA---------------DGEIYVQLQ----ESVRGCDVYLVQPTCP 156 (355)
Q Consensus 98 ~~~ifsg~~~~~LA~~Ia~~Lg~~-l~~~~-~~~Fp---------------DGE~~v~i~----~~VrG~dV~iiqs~~~ 156 (355)
.+++=--...-.+|..+|++||.+ ...+. .+++. +......+. ..++|++|+||...-.
T Consensus 86 DvIVgv~~~Gi~lA~~lA~~Lg~~~~vpl~~~rK~~~~~~l~~~~~sitt~~~~~~~~l~~~~~~~~~GkrVLIVDDVit 165 (233)
T PRK06031 86 DVVAGLPTLGLTLAAAVARKLGHTRYVPLGTSRKFWYRDELSVPLSSITTPDQGKRLYIDPRMLPLLEGRRVALIDDVIS 165 (233)
T ss_pred cEEEEeccCCHHHHHHHHHHHCCCCceEEEEccccccccccccceeeeeccCccceEEecccccccCCCCEEEEEEeEcc
Confidence 343333455679999999999964 12211 12221 111122222 2368999999866432
Q ss_pred CchhHHHHHHHHHHHHHhcCCCeE
Q 018472 157 PANENLMELLIMIDACRRASAKNI 180 (355)
Q Consensus 157 p~nd~lmELll~idalr~~~a~~I 180 (355)
.- .. +.-+++.++++|++-+
T Consensus 166 TG-~T---l~aa~~lL~~~Ga~Vv 185 (233)
T PRK06031 166 SG-AS---IVAGLRLLAACGIEPA 185 (233)
T ss_pred cc-HH---HHHHHHHHHHcCCeEE
Confidence 21 22 3455677888888533
No 195
>TIGR01698 PUNP purine nucleotide phosphorylase. methylthioadenosine.
Probab=36.04 E-value=1.1e+02 Score=29.26 Aligned_cols=80 Identities=10% Similarity=0.157 Sum_probs=50.9
Q ss_pred EEEEECCCCHHHHHHHHHHhCCceeceeeeecC-------CCceEEEeccCcCCCcEEEEccCCCCch-hHHHHHHHHHH
Q 018472 99 IKLFSGTANPALSQEIACYMGVELGKINIKRFA-------DGEIYVQLQESVRGCDVYLVQPTCPPAN-ENLMELLIMID 170 (355)
Q Consensus 99 ~~ifsg~~~~~LA~~Ia~~Lg~~l~~~~~~~Fp-------DGE~~v~i~~~VrG~dV~iiqs~~~p~n-d~lmELll~id 170 (355)
+-|+.|+.=-.|++++.+..-++.+ ++-.|| .|++.+ ..+.|++|+.+|.-.+.-. -.+-+.-.-+.
T Consensus 2 i~iI~GSGl~~~~~~~~~~~~ipY~--~ip~fp~~tv~gH~g~l~~---G~l~g~~V~~l~Gr~H~yeg~~~~~v~~~i~ 76 (237)
T TIGR01698 2 MAIVLGSGWGGAVEALGEPVELPYA--EIPGFPAPTVSGHAGELIR---VRIGDGPVLVLGGRTHAYEGGDARAVVHPVR 76 (237)
T ss_pred EEEEEeCCHHHHHHhhcCceEeecc--cCCCCCCCcccCccceEEE---EEECCEEEEEEcCCCcccCCCcHHHhHHHHH
Confidence 4577788866777777555333333 355666 354443 4566889998885332111 12335688899
Q ss_pred HHHhcCCCeEEEE
Q 018472 171 ACRRASAKNITAV 183 (355)
Q Consensus 171 alr~~~a~~ItlV 183 (355)
++|..|+++|.+.
T Consensus 77 al~~lGv~~ii~t 89 (237)
T TIGR01698 77 TARATGAETLILT 89 (237)
T ss_pred HHHHcCCCEEEEE
Confidence 9999999988754
No 196
>cd01519 RHOD_HSP67B2 Member of the Rhodanese Homology Domain superfamily. This CD includes the heat shock protein 67B2 of Drosophila melanogaster and other similar proteins, many of which are uncharacterized.
Probab=35.94 E-value=61 Score=25.50 Aligned_cols=33 Identities=18% Similarity=0.076 Sum_probs=27.5
Q ss_pred CCCEEEEEeCcccchHHHHHHHHHHHHcCCCEEEEE
Q 018472 308 KGKVAVMVDDMIDTAGTIAKGAALLHQEGAREVYAC 343 (355)
Q Consensus 308 kGK~VLIVDDIIdTG~Tl~~aa~~Lk~~GA~~V~v~ 343 (355)
+++.|+++++ +|.+...++..|+..|-+.|+.+
T Consensus 65 ~~~~ivv~c~---~g~~s~~~~~~l~~~G~~~v~~~ 97 (106)
T cd01519 65 KDKELIFYCK---AGVRSKAAAELARSLGYENVGNY 97 (106)
T ss_pred CCCeEEEECC---CcHHHHHHHHHHHHcCCccceec
Confidence 5778899854 78888899999999999888765
No 197
>cd01528 RHOD_2 Member of the Rhodanese Homology Domain superfamily, subgroup 2. Subgroup 2 includes uncharacterized putative rhodanese-related domains.
Probab=35.71 E-value=66 Score=25.31 Aligned_cols=33 Identities=24% Similarity=0.275 Sum_probs=26.9
Q ss_pred CCCEEEEEeCcccchHHHHHHHHHHHHcCCCEEEEE
Q 018472 308 KGKVAVMVDDMIDTAGTIAKGAALLHQEGAREVYAC 343 (355)
Q Consensus 308 kGK~VLIVDDIIdTG~Tl~~aa~~Lk~~GA~~V~v~ 343 (355)
+++.++|+++ +|.....++..|++.|-..|+.+
T Consensus 57 ~~~~vv~~c~---~g~rs~~~~~~l~~~G~~~v~~l 89 (101)
T cd01528 57 PDKDIVVLCH---HGGRSMQVAQWLLRQGFENVYNL 89 (101)
T ss_pred CCCeEEEEeC---CCchHHHHHHHHHHcCCccEEEe
Confidence 4678899865 68888999999999999887643
No 198
>PF04914 DltD_C: DltD C-terminal region; InterPro: IPR006998 The dlt operon (dltA to dltD) of Lactobacillus rhamnosus 7469 encodes four proteins responsible for the esterification of lipoteichoic acid (LTA) by D-alanine. These esters play an important role in controlling the net anionic charge of the poly (GroP) moiety of LTA. DltA and DltC encode the D-alanine-D-alanyl carrier protein ligase (Dcl) and D-alanyl carrier protein (Dcp), respectively. Whereas the functions of DltA and DltC are defined, the functions of DltB and DltD are unknown. In vitro assays showed that DltD bound Dcp for ligation with D-alanine by Dcl in the presence of ATP. In contrast, the homologue of Dcp, the Escherichia coli acyl carrier protein (ACP), involved in fatty acid biosynthesis, was not bound to DltD and thus was not ligated with D-alanine. DltD also catalyzed the hydrolysis of the mischarged D-alanyl-ACP. The hydrophobic N-terminal sequence of DltD was required for anchoring the protein in the membrane. It is hypothesized that this membrane-associated DltD facilitates the binding of Dcp and Dcl for ligation of Dcp with D-alanine and that the resulting D-alanyl-Dcp is translocated to the primary site of D-alanylation []. These sequences contain the C-terminal region of DltD.; PDB: 3BMA_C.
Probab=35.38 E-value=1e+02 Score=26.68 Aligned_cols=72 Identities=18% Similarity=0.348 Sum_probs=43.7
Q ss_pred HHHHHHHHHHHHHhcCCCeEEEEee-------CccccccccccCCCCcchHHHHHHHHHHhCCCEEEEccCCchhhhccc
Q 018472 161 NLMELLIMIDACRRASAKNITAVIP-------YFGYARADRKTQGRESIAAKLVANLITEAGADRVLACDLHSGQSMGYF 233 (355)
Q Consensus 161 ~lmELll~idalr~~~a~~ItlViP-------Y~~YaRqDr~~~~ge~isak~vA~lL~~~G~d~VitvDlHs~~~~~~F 233 (355)
..=.|-++++.|++.|++-+.+++| |.|++++.|. .+ -+-|..++.+.|+ . .+|+.......||
T Consensus 34 Ey~Dl~l~L~~~k~~g~~~lfVi~PvNg~wydytG~~~~~r~-----~~-y~kI~~~~~~~gf-~--v~D~s~~~y~~yf 104 (130)
T PF04914_consen 34 EYDDLQLLLDVCKELGIDVLFVIQPVNGKWYDYTGLSKEMRQ-----EY-YKKIKYQLKSQGF-N--VADFSDDEYEPYF 104 (130)
T ss_dssp HHHHHHHHHHHHHHTT-EEEEEE----HHHHHHTT--HHHHH-----HH-HHHHHHHHHTTT-----EEE-TTGTTSTTS
T ss_pred cHHHHHHHHHHHHHcCCceEEEecCCcHHHHHHhCCCHHHHH-----HH-HHHHHHHHHHCCC-E--EEecccCCCCCce
Confidence 4667788999999999988877777 4555555442 23 5567788888887 4 4577777777666
Q ss_pred CCcccccc
Q 018472 234 DIPVDHVY 241 (355)
Q Consensus 234 ~ip~~~l~ 241 (355)
-....|+.
T Consensus 105 m~D~iHlg 112 (130)
T PF04914_consen 105 MQDTIHLG 112 (130)
T ss_dssp BSSSSSB-
T ss_pred eeecccCc
Confidence 43344554
No 199
>PF02006 DUF137: Protein of unknown function DUF137; InterPro: IPR002855 The archaeal proteins in this family have no known function.
Probab=34.76 E-value=69 Score=29.22 Aligned_cols=83 Identities=22% Similarity=0.356 Sum_probs=50.6
Q ss_pred HHHHHHHhcCCCeEEEE-------eeCccccccccccCCCCcchHHH---------HHHHHHHhCCCEEEEccCCc-hhh
Q 018472 167 IMIDACRRASAKNITAV-------IPYFGYARADRKTQGRESIAAKL---------VANLITEAGADRVLACDLHS-GQS 229 (355)
Q Consensus 167 l~idalr~~~a~~ItlV-------iPY~~YaRqDr~~~~ge~isak~---------vA~lL~~~G~d~VitvDlHs-~~~ 229 (355)
-+.+.+++.|++.|-.+ ||-+.-.|. +..+....+|.+ =+..|..+| ..||++||.= .++
T Consensus 48 ~I~~~L~~~Ga~~vlG~~~d~~~~ip~L~~~R~--~v~~~GIy~ADVVLVPLEDGDR~EAL~~mG-K~VIaIDLNPLSRT 124 (178)
T PF02006_consen 48 KIAELLREHGAEEVLGVNPDASERIPGLDHERA--KVSKEGIYSADVVLVPLEDGDRTEALVKMG-KTVIAIDLNPLSRT 124 (178)
T ss_pred HHHHHHHHcCCCEeeccCCcccccCCCCCCccc--eECcccceeccEEEeccCCCcHHHHHHHcC-CeEEEEeCCCcccc
Confidence 34567789999887765 666665553 222222333332 367788888 8999999863 333
Q ss_pred hcccCCc-ccccc-chHHHHHHHHh
Q 018472 230 MGYFDIP-VDHVY-CQPVILDYLAS 252 (355)
Q Consensus 230 ~~~F~ip-~~~l~-a~~~La~~L~~ 252 (355)
...-+++ +||+. +.|.+.++.++
T Consensus 125 ar~AtitIVDni~RA~p~~~~~~~~ 149 (178)
T PF02006_consen 125 ARTATITIVDNITRAIPNMIEFARE 149 (178)
T ss_pred cccCceeeehhHHHHHHHHHHHHHH
Confidence 3222333 56765 77887777654
No 200
>PLN02962 hydroxyacylglutathione hydrolase
Probab=34.57 E-value=41 Score=32.11 Aligned_cols=39 Identities=26% Similarity=0.401 Sum_probs=28.3
Q ss_pred CCCEEEEEeCcccchHHHHHHHHHHHHcCCCEEEEEEEcccc
Q 018472 308 KGKVAVMVDDMIDTAGTIAKGAALLHQEGAREVYACCTHAVF 349 (355)
Q Consensus 308 kGK~VLIVDDIIdTG~Tl~~aa~~Lk~~GA~~V~v~~tHglf 349 (355)
.++.++|||-.-. ......+.|++.|.+-.+++.||+=+
T Consensus 34 ~~~~avlIDP~~~---~~~~~l~~l~~~g~~i~~Il~TH~H~ 72 (251)
T PLN02962 34 PDKPALLIDPVDK---TVDRDLSLVKELGLKLIYAMNTHVHA 72 (251)
T ss_pred CCCEEEEECCCCC---cHHHHHHHHHHCCCeeEEEEcCCCCc
Confidence 4678999996321 23444578888898888999999843
No 201
>PRK05568 flavodoxin; Provisional
Probab=34.37 E-value=2.7e+02 Score=23.14 Aligned_cols=97 Identities=14% Similarity=0.210 Sum_probs=50.6
Q ss_pred CHHHHHHHHHHhCCceeceeeeecCCCceEEEeccCcCCCcEEEEccCCCCchhHH---HHHHHHHHHHHh-cCCCeEEE
Q 018472 107 NPALSQEIACYMGVELGKINIKRFADGEIYVQLQESVRGCDVYLVQPTCPPANENL---MELLIMIDACRR-ASAKNITA 182 (355)
Q Consensus 107 ~~~LA~~Ia~~Lg~~l~~~~~~~FpDGE~~v~i~~~VrG~dV~iiqs~~~p~nd~l---mELll~idalr~-~~a~~Itl 182 (355)
+..+|+.|++.++-.-..+++....+-.. .++.+.|.+++.+-.. +..+ ..+.-+++.++. ...+.+.+
T Consensus 15 T~~~a~~i~~~~~~~g~~v~~~~~~~~~~-----~~~~~~d~iilgsp~y--~~~~~~~~~~~~f~~~~~~~~~~k~~~~ 87 (142)
T PRK05568 15 TEAMANLIAEGAKENGAEVKLLNVSEASV-----DDVKGADVVALGSPAM--GDEVLEEGEMEPFVESISSLVKGKKLVL 87 (142)
T ss_pred HHHHHHHHHHHHHHCCCeEEEEECCCCCH-----HHHHhCCEEEEECCcc--CcccccchhHHHHHHHhhhhhCCCEEEE
Confidence 45899999998753323445555544221 2567788888876432 1111 122333444432 23344444
Q ss_pred EeeCccccccccccCCCCcchHHHHHHHHHHhCCCEEE
Q 018472 183 VIPYFGYARADRKTQGRESIAAKLVANLITEAGADRVL 220 (355)
Q Consensus 183 ViPY~~YaRqDr~~~~ge~isak~vA~lL~~~G~d~Vi 220 (355)
+--| +++- .-..+.+.+.|+..|++.+-
T Consensus 88 f~t~-G~~~---------~~~~~~~~~~l~~~g~~~~~ 115 (142)
T PRK05568 88 FGSY-GWGD---------GEWMRDWVERMEGYGANLVN 115 (142)
T ss_pred EEcc-CCCC---------ChHHHHHHHHHHHCCCEEeC
Confidence 4332 4421 12467788888887765444
No 202
>PRK10773 murF UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase; Reviewed
Probab=34.26 E-value=3.9e+02 Score=27.38 Aligned_cols=131 Identities=12% Similarity=0.096 Sum_probs=68.1
Q ss_pred HHHHHHHHHhCCceecee--eeecCCCceEEEeccCcCCCcEEEEccCCCCchhHHHHHHHHHHHHHhcCCCeEEEEeeC
Q 018472 109 ALSQEIACYMGVELGKIN--IKRFADGEIYVQLQESVRGCDVYLVQPTCPPANENLMELLIMIDACRRASAKNITAVIPY 186 (355)
Q Consensus 109 ~LA~~Ia~~Lg~~l~~~~--~~~FpDGE~~v~i~~~VrG~dV~iiqs~~~p~nd~lmELll~idalr~~~a~~ItlViPY 186 (355)
..|-.+|..||++...+. +..|..=+-+.++-.. +..+.||...+. .+--.+--.++++++...++| +|+.=
T Consensus 288 laAia~a~~lGi~~~~i~~~L~~~~~~~gR~e~v~~--~~g~~iIDDsYn---~nP~s~~aaL~~l~~~~~r~i-~VlG~ 361 (453)
T PRK10773 288 LAAAALAMSVGATLDAVKAGLANLKAVPGRLFPIQL--AEGQLLLDDSYN---ANVGSMTAAAQVLAEMPGYRV-MVVGD 361 (453)
T ss_pred HHHHHHHHHcCCCHHHHHHHHHhCCCCCCceeEEEC--CCCeEEEEcCCC---CCHHHHHHHHHHHHhCCCCEE-EEECC
Confidence 556677888899877665 5677532222222111 123566654332 222344555566766544555 56643
Q ss_pred ccc--cccccccCCCCcchHHHHHHHHHHhCCCEEEEccCCchhhhcccCCccccccchHHHHHHHHhhc
Q 018472 187 FGY--ARADRKTQGRESIAAKLVANLITEAGADRVLACDLHSGQSMGYFDIPVDHVYCQPVILDYLASKT 254 (355)
Q Consensus 187 ~~Y--aRqDr~~~~ge~isak~vA~lL~~~G~d~VitvDlHs~~~~~~F~ip~~~l~a~~~La~~L~~~~ 254 (355)
|+= .+.++ --+.+++.+...++|.|+.+..+...+..... ......-...+.++|....
T Consensus 362 m~elG~~~~~--------~h~~~~~~~~~~~~d~v~~~G~~~~~~~~~~~-~~~~~~~~~~~~~~l~~~~ 422 (453)
T PRK10773 362 MAELGAESEA--------CHRQVGEAAKAAGIDKVLSVGKLSHAISEASG-VGEHFADKTALIARLKALL 422 (453)
T ss_pred hhhcchHHHH--------HHHHHHHHHHHcCCCEEEEEChhHHHHHHhcC-CCeeECCHHHHHHHHHHhh
Confidence 321 11111 13567888888899999999855433221110 0011223456777776654
No 203
>cd01979 Pchlide_reductase_N Pchlide_reductase_N: N protein of the NB protein complex of Protochlorophyllide (Pchlide)_reductase. Pchlide reductase catalyzes the reductive formation of chlorophyllide (chlide) from protochlorophyllide (pchlide) during biosynthesis of chlorophylls and bacteriochlorophylls. This group contains both the light-independent Pchlide reductase (DPOR) and light-dependent Pchlide reductase (LPOR). Angiosperms contain only LPOR, cyanobacteria, algae and gymnosperms contain both DPOR and LPOR, primitive anoxygenic photosynthetic bacteria contain only DPOR. NB is structurally similar to the FeMo protein of nitrogenase, forming an N2B2 heterotetramer. N and B are homologous to the FeMo alpha and beta subunits respectively. Also in common with nitrogenase in vitro DPOR activity requires ATP hydrolysis and dithoionite or ferredoxin as electron donor. The NB protein complex may serve as a catalytic site for Pchlide reduction similar to MoFe for nitrogen reduction.
Probab=33.98 E-value=1.4e+02 Score=30.14 Aligned_cols=130 Identities=12% Similarity=0.009 Sum_probs=67.9
Q ss_pred HHHHHHHHHHhCCCEEEEccCCchhhhcccCCc--cccccc---hHHHHHHHHhhcCCCCCeEEEecC----CChhHHHH
Q 018472 204 AKLVANLITEAGADRVLACDLHSGQSMGYFDIP--VDHVYC---QPVILDYLASKTVSSNDLVVVSPD----VGGVARAR 274 (355)
Q Consensus 204 ak~vA~lL~~~G~d~VitvDlHs~~~~~~F~ip--~~~l~a---~~~La~~L~~~~~~~~~~vVVspd----~Ggv~rA~ 274 (355)
.+.+.++|+.+|++-+..+.- ..+..+-..+ .-++.. ....++++.+++ .-+.+..+- .+--.|.+
T Consensus 169 ~~el~~lL~~~Gi~v~~~~~d--~~~~~~~~~~~a~~~~~~~~~~~~~A~~Le~r~---giP~~~~~~P~G~~~t~~~l~ 243 (396)
T cd01979 169 EDQLRRELEQLGIPVVGFLPP--RRYTDLPVIGPGTYVLGIQPFLSRTATTLMRRR---KCKLLSAPFPIGPDGTRAWLE 243 (396)
T ss_pred HHHHHHHHHHcCCeEEEEeCC--CChHHhhccCcceEEEEeChhHHHHHHHHHHhc---CCCcccCCcCcChHHHHHHHH
Confidence 677889999999877533321 1122111111 112211 234788888764 222222222 23445667
Q ss_pred HHHHHcCCCCEEEEEEeecCCCeeEEE-eeecCCCCCEEEEEeCcccchHHHHHHHHHHHHcCCCEEEEEEE
Q 018472 275 AFAKKLSDAPLAIVDKRRHGHNVAEVM-NLIGDVKGKVAVMVDDMIDTAGTIAKGAALLHQEGAREVYACCT 345 (355)
Q Consensus 275 ~lA~~L~~~p~~~v~K~R~~~~~~e~~-~l~gdVkGK~VLIVDDIIdTG~Tl~~aa~~Lk~~GA~~V~v~~t 345 (355)
.+++.++ ..-..+.++|.. ..+.+ .....++||+|.|+-| +.-....++.|.+.|..-|.+.+.
T Consensus 244 ~la~~~g-~~~~~i~~e~~~--~~~~l~~~~~~l~Gkrv~i~g~----~~~~~~la~~L~elGm~vv~~~t~ 308 (396)
T cd01979 244 AICSAFG-IFPSVLAEREAR--AWRALEPYLDLLRGKSIFFMGD----NLLEIPLARFLTRCGMIVVEVGTP 308 (396)
T ss_pred HHHHHhC-CChhHHHHHHHH--HHHHHHHHHHhhcCCEEEEECC----chHHHHHHHHHHHCCCEEEeeCCC
Confidence 7777775 221122222110 00000 1112478999999865 445778888999999988877553
No 204
>PRK08931 5'-methylthioadenosine phosphorylase; Provisional
Probab=33.62 E-value=57 Score=32.01 Aligned_cols=79 Identities=13% Similarity=0.168 Sum_probs=45.7
Q ss_pred CCCEEEEECCCCHH---HHHHHHHHhCCceeceeeeecCCCceEEEeccCcCCCcEEEEc--cCCCCchhHHHHHHHHHH
Q 018472 96 NNRIKLFSGTANPA---LSQEIACYMGVELGKINIKRFADGEIYVQLQESVRGCDVYLVQ--PTCPPANENLMELLIMID 170 (355)
Q Consensus 96 ~~~~~ifsg~~~~~---LA~~Ia~~Lg~~l~~~~~~~FpDGE~~v~i~~~VrG~dV~iiq--s~~~p~nd~lmELll~id 170 (355)
..++-|+.||.--. |+..+-...-++.++ |.|++.+ ..+.|++|+++| ...+...-..+..---+.
T Consensus 3 ~p~igIIgGSGl~~~~~l~~~~~~~~~tpyg~------psg~l~~---G~l~G~~V~~l~RhGr~H~y~p~~i~~rAni~ 73 (289)
T PRK08931 3 KAVLGIIGGSGVYDIDGLEDARWERVESPWGE------PSDALLF---GRLGGVPMVFLPRHGRGHRLSPSDINYRANID 73 (289)
T ss_pred CceEEEEecCCcCCccccccceeeeeEcCCCC------CcCcEEE---EEECCEEEEEEeCCCCCCccChHHcccHHHHH
Confidence 34678888887542 444333333333333 4555544 356688999996 222221223333444788
Q ss_pred HHHhcCCCeEEEE
Q 018472 171 ACRRASAKNITAV 183 (355)
Q Consensus 171 alr~~~a~~ItlV 183 (355)
++|..|+++|.+.
T Consensus 74 alk~lGv~~ii~t 86 (289)
T PRK08931 74 ALKRAGVTDIVSL 86 (289)
T ss_pred HHHHcCCCEEEEe
Confidence 9999999998754
No 205
>cd04820 PA_M28_1_1 PA_M28_1_1: Protease-associated (PA) domain, peptidase family M28, subfamily-1, subgroup 1. A subgroup of PA-domain containing proteins belonging to the peptidase family M28. Family M28 contains aminopeptidases and carboxypeptidases, and has co-catalytic zinc ions. The PA domain is an insert domain in a diverse fraction of proteases. The significance of the PA domain to many of the proteins in which it is inserted is undetermined. It may be a protein-protein interaction domain. At peptidase active sites, the PA domain may participate in substrate binding and/or promoting conformational changes, which influence the stability and accessibility of the site to substrate. Proteins into which the PA domain is inserted include the following members of the peptidase family M28: i) prostate-specific membrane antigen (PSMA), ii) yeast aminopeptidase Y, and ii) human TfR (transferrin receptor)1 and human TfR2. The proteins listed above belong to other subgroups; relatively litt
Probab=33.00 E-value=81 Score=27.54 Aligned_cols=39 Identities=23% Similarity=0.242 Sum_probs=29.2
Q ss_pred CCCCCEEEEEeCcccch--------HHHHHHHHHHHHcCCCEEEEEE
Q 018472 306 DVKGKVAVMVDDMIDTA--------GTIAKGAALLHQEGAREVYACC 344 (355)
Q Consensus 306 dVkGK~VLIVDDIIdTG--------~Tl~~aa~~Lk~~GA~~V~v~~ 344 (355)
||+||-||+.....+.. ++...=.+.+.++||.-|.++.
T Consensus 47 DVkGKIVlv~~g~p~~~~~~~~~~~~~~~~K~~~A~~~GA~aVIi~~ 93 (137)
T cd04820 47 DVKGKIVVVLSGGPAGIPSEEGAHAHSSNEKARYAAKAGAIGMITLT 93 (137)
T ss_pred CCCCeEEEEEcCCCCccccccccccccHHHHHHHHHHCCCeEEEEEe
Confidence 89999998888776421 2465667788899999887665
No 206
>COG0106 HisA Phosphoribosylformimino-5-aminoimidazole carboxamide ribonucleotide (ProFAR) isomerase [Amino acid transport and metabolism]
Probab=32.84 E-value=4.5e+02 Score=25.24 Aligned_cols=110 Identities=17% Similarity=0.177 Sum_probs=75.8
Q ss_pred ECCCCHHHHHHHHHHhCCceeceeeeecCCCceEEEeccCcC-----------CCcEEEEccCCCCchhHHHHHHHHHHH
Q 018472 103 SGTANPALSQEIACYMGVELGKINIKRFADGEIYVQLQESVR-----------GCDVYLVQPTCPPANENLMELLIMIDA 171 (355)
Q Consensus 103 sg~~~~~LA~~Ia~~Lg~~l~~~~~~~FpDGE~~v~i~~~Vr-----------G~dV~iiqs~~~p~nd~lmELll~ida 171 (355)
.++.|.++.++|++.+.+ .||+.+-+| |.+-+|+.|..-. | .=++.++
T Consensus 59 g~~~n~~~i~~i~~~~~~---------------~vQvGGGIRs~~~v~~ll~~G~~rViiGt~av~-~-----p~~v~~~ 117 (241)
T COG0106 59 GGPRNLEAIKEILEATDV---------------PVQVGGGIRSLEDVEALLDAGVARVIIGTAAVK-N-----PDLVKEL 117 (241)
T ss_pred CCcccHHHHHHHHHhCCC---------------CEEeeCCcCCHHHHHHHHHCCCCEEEEecceec-C-----HHHHHHH
Confidence 345677999999999865 566665555 6677777775321 2 2355678
Q ss_pred HHhcCCCeEEEEeeCccccccccccCCCCcchHHHHHHHHHHhCCCEEEEccCCchhhhcccC
Q 018472 172 CRRASAKNITAVIPYFGYARADRKTQGRESIAAKLVANLITEAGADRVLACDLHSGQSMGYFD 234 (355)
Q Consensus 172 lr~~~a~~ItlViPY~~YaRqDr~~~~ge~isak~vA~lL~~~G~d~VitvDlHs~~~~~~F~ 234 (355)
|++.| .+|.+=+-+-.=-..-+..+....++.-.+++-++..|+.+++.=|++.+-+..-.|
T Consensus 118 ~~~~g-~rivv~lD~r~g~vav~GW~e~s~~~~~~l~~~~~~~g~~~ii~TdI~~DGtl~G~n 179 (241)
T COG0106 118 CEEYG-DRIVVALDARDGKVAVSGWQEDSGVELEELAKRLEEVGLAHILYTDISRDGTLSGPN 179 (241)
T ss_pred HHHcC-CcEEEEEEccCCccccccccccccCCHHHHHHHHHhcCCCeEEEEecccccccCCCC
Confidence 88888 899887765321111122345677788899999999999999999998876654333
No 207
>PF09419 PGP_phosphatase: Mitochondrial PGP phosphatase; InterPro: IPR010021 This group of hypothetical proteins is a part of the IIIA subfamily of the haloacid dehalogenase (HAD) superfamily of hydrolases. All characterised members of this subfamily and most characterised members of the HAD superfamily are phosphatases. HAD superfamily phosphatases contain active site residues in several conserved catalytic motifs [], all of which are found conserved here. This family consists of sequences from fungi, plants, cyanobacteria, Gram-positive bacteria and Deinococcus. There is presently no characterisation of any sequence in this family.
Probab=32.78 E-value=2.4e+02 Score=25.39 Aligned_cols=117 Identities=16% Similarity=0.198 Sum_probs=0.0
Q ss_pred HHHHhCCCEEEEccCCchhhhcccC-----CccccccchHHHHHHHHhhcCCCCC--eEEEecCCC-----hhHHHHHHH
Q 018472 210 LITEAGADRVLACDLHSGQSMGYFD-----IPVDHVYCQPVILDYLASKTVSSND--LVVVSPDVG-----GVARARAFA 277 (355)
Q Consensus 210 lL~~~G~d~VitvDlHs~~~~~~F~-----ip~~~l~a~~~La~~L~~~~~~~~~--~vVVspd~G-----gv~rA~~lA 277 (355)
.|...|+..|+. | .+...-...+.+.+++.+--..+.. .+||+-..| ...+|+.+.
T Consensus 35 ~Lk~~Gik~li~------------DkDNTL~~~~~~~i~~~~~~~~~~l~~~~~~~~v~IvSNsaGs~~d~~~~~a~~~~ 102 (168)
T PF09419_consen 35 HLKKKGIKALIF------------DKDNTLTPPYEDEIPPEYAEWLNELKKQFGKDRVLIVSNSAGSSDDPDGERAEALE 102 (168)
T ss_pred hhhhcCceEEEE------------cCCCCCCCCCcCcCCHHHHHHHHHHHHHCCCCeEEEEECCCCcccCccHHHHHHHH
Q ss_pred HHcCCCCEEEEEEeecCCCeeEEEeeecCC----CCCEEEEEeCcccchHHHHHHHHHHHHcCCCEEEEEEEccc
Q 018472 278 KKLSDAPLAIVDKRRHGHNVAEVMNLIGDV----KGKVAVMVDDMIDTAGTIAKGAALLHQEGAREVYACCTHAV 348 (355)
Q Consensus 278 ~~L~~~p~~~v~K~R~~~~~~e~~~l~gdV----kGK~VLIVDDIIdTG~Tl~~aa~~Lk~~GA~~V~v~~tHgl 348 (355)
+.|+ +| .+.+..++.....++....+.- +-+.+++|.| .-..+.|-..-...-.+++++|+
T Consensus 103 ~~lg-Ip-vl~h~~kKP~~~~~i~~~~~~~~~~~~p~eiavIGD--------rl~TDVl~gN~~G~~tilv~~gv 167 (168)
T PF09419_consen 103 KALG-IP-VLRHRAKKPGCFREILKYFKCQKVVTSPSEIAVIGD--------RLFTDVLMGNRMGSYTILVTDGV 167 (168)
T ss_pred HhhC-Cc-EEEeCCCCCccHHHHHHHHhhccCCCCchhEEEEcc--------hHHHHHHHhhccCceEEEEecCc
No 208
>PRK00779 ornithine carbamoyltransferase; Provisional
Probab=32.71 E-value=4.9e+02 Score=25.54 Aligned_cols=38 Identities=16% Similarity=0.096 Sum_probs=28.6
Q ss_pred ecCCCCCEEEEEeCcccchHHHHHHHHHHHHcCCCEEEEEEE
Q 018472 304 IGDVKGKVAVMVDDMIDTAGTIAKGAALLHQEGAREVYACCT 345 (355)
Q Consensus 304 ~gdVkGK~VLIVDDIIdTG~Tl~~aa~~Lk~~GA~~V~v~~t 345 (355)
.|+++|.+|.+|=| .+.|+...+..+...|+ +|.+++.
T Consensus 147 ~g~l~gl~i~~vGd---~~~v~~Sl~~~l~~~g~-~v~~~~P 184 (304)
T PRK00779 147 RGSLKGLKVAWVGD---GNNVANSLLLAAALLGF-DLRVATP 184 (304)
T ss_pred hCCcCCcEEEEEeC---CCccHHHHHHHHHHcCC-EEEEECC
Confidence 36788999999988 45788888888888886 4555554
No 209
>cd01532 4RHOD_Repeat_1 Member of the Rhodanese Homology Domain superfamily, repeat 1. This CD includes putative rhodanese-related sulfurtransferases which contain 4 copies of the Rhodanese Homology Domain. This CD aligns the 1st repeat which does not contain the putative catalytic Cys residue.
Probab=32.67 E-value=59 Score=25.34 Aligned_cols=32 Identities=19% Similarity=0.260 Sum_probs=24.4
Q ss_pred CCCEEEEEeCcccchHH--HHHHHHHHHHcCCCEEEE
Q 018472 308 KGKVAVMVDDMIDTAGT--IAKGAALLHQEGAREVYA 342 (355)
Q Consensus 308 kGK~VLIVDDIIdTG~T--l~~aa~~Lk~~GA~~V~v 342 (355)
+++.++|+.+ +|.. ...+++.|++.|-++|+.
T Consensus 49 ~~~~ivl~c~---~G~~~~s~~aa~~L~~~G~~~v~~ 82 (92)
T cd01532 49 RDTPIVVYGE---GGGEDLAPRAARRLSELGYTDVAL 82 (92)
T ss_pred CCCeEEEEeC---CCCchHHHHHHHHHHHcCccCEEE
Confidence 3567888854 6653 578889999999998874
No 210
>PRK02006 murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase; Provisional
Probab=32.52 E-value=2.5e+02 Score=29.03 Aligned_cols=148 Identities=13% Similarity=0.148 Sum_probs=75.3
Q ss_pred HHHHHHHHHhCCceecee--eeecCCCceEEEeccCcCCCcEEEEccCCCCchhHHHHHHHHHHHHHhcCCCeEEEEeeC
Q 018472 109 ALSQEIACYMGVELGKIN--IKRFADGEIYVQLQESVRGCDVYLVQPTCPPANENLMELLIMIDACRRASAKNITAVIPY 186 (355)
Q Consensus 109 ~LA~~Ia~~Lg~~l~~~~--~~~FpDGE~~v~i~~~VrG~dV~iiqs~~~p~nd~lmELll~idalr~~~a~~ItlViPY 186 (355)
-.|-.+|..||++...+. +..|.--+-+.++-.... .+.+|... .+.| .-.+ ..|++.. .+++.+|+.
T Consensus 326 laAia~~~~lgi~~~~i~~aL~~f~~~~gR~e~~~~~~--g~~~idDs-~~tn--~~s~---~~al~~~-~~~ii~IlG- 395 (498)
T PRK02006 326 LAALALARAIGLPAAPLLHGLREYRGEPHRVELVATID--GVDYYDDS-KGTN--VGAT---VAALDGL-AQRVVLIAG- 395 (498)
T ss_pred HHHHHHHHHcCCCHHHHHHHHhhCCCCCCceEEEEEEC--CEEEEEcC-CCCC--HHHH---HHHHHhC-CCCEEEEEc-
Confidence 557778888999876554 566754444444433332 34455443 2333 2222 2444443 357878863
Q ss_pred ccccccccccCCCCcchHHHHHHHHHHhCCCEEEEccCCchhhhccc---CCccccccchHHHHHHHHhhcCCCCCeEEE
Q 018472 187 FGYARADRKTQGRESIAAKLVANLITEAGADRVLACDLHSGQSMGYF---DIPVDHVYCQPVILDYLASKTVSSNDLVVV 263 (355)
Q Consensus 187 ~~YaRqDr~~~~ge~isak~vA~lL~~~G~d~VitvDlHs~~~~~~F---~ip~~~l~a~~~La~~L~~~~~~~~~~vVV 263 (355)
-.+.|..+ ++ +.+.+.. .+|.|+.+..+...+...+ ..+...........+++.+.. ...+.|++
T Consensus 396 --g~~~~~~~---~~-----~~~~l~~-~~~~vi~~G~~~~~i~~~~~~~~~~~~~~~~~~eAi~~a~~~~-~~gd~VLl 463 (498)
T PRK02006 396 --GDGKGQDF---SP-----LAAPVAR-HARAVVLIGRDAPAIRAALAGTGVPLVDAATLEEAVRAAAALA-QPGDAVLL 463 (498)
T ss_pred --CCCCCCCH---HH-----HHHHHHH-hCCEEEEEcCCHHHHHHHHhhCCCceEecCCHHHHHHHHHHhc-CCCCEEEE
Confidence 22323321 12 2344433 3689999877665543222 222211222333444444332 34568899
Q ss_pred ecCCChhHHHHHHHH
Q 018472 264 SPDVGGVARARAFAK 278 (355)
Q Consensus 264 spd~Ggv~rA~~lA~ 278 (355)
+|..+++..-+.+.+
T Consensus 464 sp~~~S~d~f~~~~~ 478 (498)
T PRK02006 464 SPACASLDMFRNYAH 478 (498)
T ss_pred ChhhcccccccCHHH
Confidence 988877765444443
No 211
>PRK00676 hemA glutamyl-tRNA reductase; Validated
Probab=32.15 E-value=85 Score=31.52 Aligned_cols=36 Identities=17% Similarity=0.211 Sum_probs=31.6
Q ss_pred cCCCCCEEEEEeCcccchHHHHHHHHHHHHcCCCEEEEEE
Q 018472 305 GDVKGKVAVMVDDMIDTAGTIAKGAALLHQEGAREVYACC 344 (355)
Q Consensus 305 gdVkGK~VLIVDDIIdTG~Tl~~aa~~Lk~~GA~~V~v~~ 344 (355)
|+++||+|+|| -+|.+-..+++.|.++|+++|+++-
T Consensus 170 ~~l~~k~vLvI----GaGem~~l~a~~L~~~g~~~i~v~n 205 (338)
T PRK00676 170 QKSKKASLLFI----GYSEINRKVAYYLQRQGYSRITFCS 205 (338)
T ss_pred CCccCCEEEEE----cccHHHHHHHHHHHHcCCCEEEEEc
Confidence 67899999986 4799999999999999999888764
No 212
>COG3473 Maleate cis-trans isomerase [Secondary metabolites biosynthesis, transport, and catabolism]
Probab=32.14 E-value=2.8e+02 Score=26.39 Aligned_cols=98 Identities=10% Similarity=0.218 Sum_probs=55.8
Q ss_pred HHHHHHHhcCCCeEEEEeeCccccccccccCCCCcchHHHHHHHHHHhCCCEEEEccCCchhhhccc-CCcccccc--ch
Q 018472 167 IMIDACRRASAKNITAVIPYFGYARADRKTQGRESIAAKLVANLITEAGADRVLACDLHSGQSMGYF-DIPVDHVY--CQ 243 (355)
Q Consensus 167 l~idalr~~~a~~ItlViPY~~YaRqDr~~~~ge~isak~vA~lL~~~G~d~VitvDlHs~~~~~~F-~ip~~~l~--a~ 243 (355)
-.+++|+..|+++|.++-||.- .+ -+..+++|+.-|++-+=.--| |+- |..+-.+. ..
T Consensus 108 Avv~aL~al~a~ri~vlTPY~~------------ev-n~~e~ef~~~~Gfeiv~~~~L------gi~dn~eigr~~P~~~ 168 (238)
T COG3473 108 AVVEALNALGAQRISVLTPYID------------EV-NQREIEFLEANGFEIVDFKGL------GITDNLEIGRQEPWAV 168 (238)
T ss_pred HHHHHHHhhCcceEEEeccchh------------hh-hhHHHHHHHhCCeEEEEeecc------CCcccchhcccChHHH
Confidence 3578999999999999999982 12 344677888878643322111 111 11111111 12
Q ss_pred HHHHHHHHhhcCCCCCeEEEecCCChhHHHHHHHHHcCCCCEE
Q 018472 244 PVILDYLASKTVSSNDLVVVSPDVGGVARARAFAKKLSDAPLA 286 (355)
Q Consensus 244 ~~La~~L~~~~~~~~~~vVVspd~Ggv~rA~~lA~~L~~~p~~ 286 (355)
..||+.+.. .+.+-..|-|....++.....+-+.+| .|+.
T Consensus 169 y~lAk~~~~--~~~DaiFiSCTnlRt~eii~~lE~~~G-~PVv 208 (238)
T COG3473 169 YRLAKEVFT--PDADAIFISCTNLRTFEIIEKLERDTG-VPVV 208 (238)
T ss_pred HHHHHHhcC--CCCCeEEEEeeccccHHHHHHHHHHhC-Ccee
Confidence 234444332 233445566677777777777777776 6643
No 213
>cd05017 SIS_PGI_PMI_1 The members of this protein family contain the SIS (Sugar ISomerase) domain and have both the phosphoglucose isomerase (PGI) and the phosphomannose isomerase (PMI) functions. These functions catalyze the reversible reactions of glucose 6-phosphate to fructose 6-phosphate, and mannose 6-phosphate to fructose 6-phosphate, respectively at an equal rate. This protein contains two SIS domains. This alignment is based on the first SIS domain.
Probab=32.01 E-value=2.7e+02 Score=22.69 Aligned_cols=74 Identities=12% Similarity=0.062 Sum_probs=38.8
Q ss_pred EEEEECCCCHHHHHHHHHHhCCceeceeeeecCCCceEEEeccCcCCCcEEEEccCCCCchhHHHHHHHHHHHHHhcCCC
Q 018472 99 IKLFSGTANPALSQEIACYMGVELGKINIKRFADGEIYVQLQESVRGCDVYLVQPTCPPANENLMELLIMIDACRRASAK 178 (355)
Q Consensus 99 ~~ifsg~~~~~LA~~Ia~~Lg~~l~~~~~~~FpDGE~~v~i~~~VrG~dV~iiqs~~~p~nd~lmELll~idalr~~~a~ 178 (355)
+.+++.-.+...|+.....+....+ ....-..|.+. ......+|++|+=|.+.. + .|++-.++.+|+.|++
T Consensus 2 I~i~G~G~S~~~a~~~~~~l~~~~~-~~~~~~~~~~~----~~~~~~~dl~I~iS~SG~-t---~e~i~~~~~a~~~g~~ 72 (119)
T cd05017 2 IVILGMGGSGIGGDLLESLLLDEAK-IPVYVVKDYTL----PAFVDRKTLVIAVSYSGN-T---EETLSAVEQAKERGAK 72 (119)
T ss_pred EEEEEcCHHHHHHHHHHHHHHhccC-CCEEEecCccC----cCCCCCCCEEEEEECCCC-C---HHHHHHHHHHHHCCCE
Confidence 4445433444455555554443222 22222333332 224556789988776543 2 3556677788999985
Q ss_pred eEE
Q 018472 179 NIT 181 (355)
Q Consensus 179 ~It 181 (355)
-|.
T Consensus 73 iI~ 75 (119)
T cd05017 73 IVA 75 (119)
T ss_pred EEE
Confidence 543
No 214
>cd05005 SIS_PHI Hexulose-6-phosphate isomerase (PHI). PHI is a member of the SIS (Sugar ISomerase domain) superfamily. In the ribulose monophosphate pathway of formaldehyde fixation, hexulose-6-phosphate synthase catalyzes the condensation of ribulose-5-phosphate with formadelhyde to become hexulose-6-phosphate, which is then isomerized to fructose-6-phosphate by PHI.
Probab=31.95 E-value=3.3e+02 Score=23.89 Aligned_cols=72 Identities=11% Similarity=0.212 Sum_probs=46.2
Q ss_pred CCCEEEEECCCCHHHHHHHHHHh---CCceeceeeeecCCCceEEEeccCcCCCcEEEEccCCCCchhHHHHHHHHHHHH
Q 018472 96 NNRIKLFSGTANPALSQEIACYM---GVELGKINIKRFADGEIYVQLQESVRGCDVYLVQPTCPPANENLMELLIMIDAC 172 (355)
Q Consensus 96 ~~~~~ifsg~~~~~LA~~Ia~~L---g~~l~~~~~~~FpDGE~~v~i~~~VrG~dV~iiqs~~~p~nd~lmELll~idal 172 (355)
.+++.+++..++..+|+.++.+| |.+.. -..|-. ......+|++|+=|.+.. +. |++-+++.+
T Consensus 33 a~~I~i~G~G~S~~~A~~~~~~l~~~g~~~~-----~~~~~~-----~~~~~~~D~vI~iS~sG~-t~---~~i~~~~~a 98 (179)
T cd05005 33 AKRIFVYGAGRSGLVAKAFAMRLMHLGLNVY-----VVGETT-----TPAIGPGDLLIAISGSGE-TS---SVVNAAEKA 98 (179)
T ss_pred CCeEEEEecChhHHHHHHHHHHHHhCCCeEE-----EeCCCC-----CCCCCCCCEEEEEcCCCC-cH---HHHHHHHHH
Confidence 35688887777788899998887 33222 222321 234556799988787543 33 445666788
Q ss_pred HhcCCCeEE
Q 018472 173 RRASAKNIT 181 (355)
Q Consensus 173 r~~~a~~It 181 (355)
|+.|++-|.
T Consensus 99 k~~g~~iI~ 107 (179)
T cd05005 99 KKAGAKVVL 107 (179)
T ss_pred HHCCCeEEE
Confidence 999986554
No 215
>PRK09213 pur operon repressor; Provisional
Probab=31.71 E-value=3.6e+02 Score=26.27 Aligned_cols=77 Identities=18% Similarity=0.241 Sum_probs=45.4
Q ss_pred CEEEEECCCCHHHHHHHHHHhCCceeceeee-ecCCCce--------------EEEec-cCc-CCCcEEEEccCCCCchh
Q 018472 98 RIKLFSGTANPALSQEIACYMGVELGKINIK-RFADGEI--------------YVQLQ-ESV-RGCDVYLVQPTCPPANE 160 (355)
Q Consensus 98 ~~~ifsg~~~~~LA~~Ia~~Lg~~l~~~~~~-~FpDGE~--------------~v~i~-~~V-rG~dV~iiqs~~~p~nd 160 (355)
...+=.....-.||..+|.+||+++.-+.-. +..+|+. ...+. ..+ +|++|+||...-..- .
T Consensus 132 D~Vvtvet~GIplA~~vA~~L~vp~vivRK~~K~~~G~~vs~~y~sgs~~~ie~m~L~~~~l~~G~rVLIVDDv~~TG-g 210 (271)
T PRK09213 132 DAVMTVETKGIPLAYAVANYLNVPFVIVRRDSKVTEGSTVSINYVSGSSKRIETMSLSKRSLKEGSRVLIVDDFMKAG-G 210 (271)
T ss_pred CEEEEEccccHHHHHHHHHHHCCCEEEEEECCCCCCCCcEEEEEEecccccceEEEEeHhhcCCcCEEEEEeeecccC-H
Confidence 3333334667799999999999997655432 2224431 11111 122 688899886543211 1
Q ss_pred HHHHHHHHHHHHHhcCCC
Q 018472 161 NLMELLIMIDACRRASAK 178 (355)
Q Consensus 161 ~lmELll~idalr~~~a~ 178 (355)
-+.-+++.++++|++
T Consensus 211 ---Ti~a~i~Ll~e~Ga~ 225 (271)
T PRK09213 211 ---TINGMISLLKEFDAE 225 (271)
T ss_pred ---hHHHHHHHHHHCCCE
Confidence 245677788888885
No 216
>COG1402 Uncharacterized protein, putative amidase [General function prediction only]
Probab=31.70 E-value=1.4e+02 Score=28.66 Aligned_cols=70 Identities=16% Similarity=0.238 Sum_probs=47.1
Q ss_pred chhHHHHHHHHHHHHHhcCCCeEEEEeeCccccc--cccccCCCCc-chHHHH-------HHHHHHhCCCEEEEccCCch
Q 018472 158 ANENLMELLIMIDACRRASAKNITAVIPYFGYAR--ADRKTQGRES-IAAKLV-------ANLITEAGADRVLACDLHSG 227 (355)
Q Consensus 158 ~nd~lmELll~idalr~~~a~~ItlViPY~~YaR--qDr~~~~ge~-isak~v-------A~lL~~~G~d~VitvDlHs~ 227 (355)
..|+++--.+.-.++.+.+++ .+|+|=++|.- .-+.| +|.. ++...+ ++=|...|+++++.|+=|-+
T Consensus 39 gTD~~ia~~ia~~~~~~~~~~--a~vlP~i~yG~s~eH~~f-pGTitl~~~t~~~~~~~~~~Sl~~~Gfrk~v~vNgHGG 115 (250)
T COG1402 39 GTDALIAEAIAEKVAERLGAE--ALVLPTIYYGVSLEHMGF-PGTITLSPETLIALLVELVESLARHGFRKFVIVNGHGG 115 (250)
T ss_pred chhHHHHHHHHHHHHHHhCCC--eEEeCccccccchhhcCC-CceEEccHHHHHHHHHHHHHHHHhcCccEEEEEecCCC
Confidence 457888888888888888887 68888665544 33444 4432 333333 33355579999999999976
Q ss_pred hhh
Q 018472 228 QSM 230 (355)
Q Consensus 228 ~~~ 230 (355)
+..
T Consensus 116 N~~ 118 (250)
T COG1402 116 NSA 118 (250)
T ss_pred cHH
Confidence 543
No 217
>PRK13671 hypothetical protein; Provisional
Probab=31.34 E-value=2.3e+02 Score=28.05 Aligned_cols=67 Identities=10% Similarity=0.109 Sum_probs=45.4
Q ss_pred EEccCCCCchhHHHHHHHHHHHHHhcCCCeEEEEeeCccccccccccCCCCcchHHHHHHHHHHhCCCEEEEccC
Q 018472 150 LVQPTCPPANENLMELLIMIDACRRASAKNITAVIPYFGYARADRKTQGRESIAAKLVANLITEAGADRVLACDL 224 (355)
Q Consensus 150 iiqs~~~p~nd~lmELll~idalr~~~a~~ItlViPY~~YaRqDr~~~~ge~isak~vA~lL~~~G~d~VitvDl 224 (355)
||.+..|.-|-++ .++-.+.++.+...|.+|+..-|.-|... ..++...=++|....|+|-|+-++.
T Consensus 5 IIaeFNP~H~GHl---~~~~~a~~~~~~d~vi~vpSg~~~qrg~p-----a~~~~~~R~~ma~~~G~DLViELP~ 71 (298)
T PRK13671 5 IIAEYNPFHNGHI---YQINYIKNKFPNEKIIVILSGKYTQRGEI-----AVASFEKRKKIALKYGVDKVIKLPF 71 (298)
T ss_pred EEeeeCCccHHHH---HHHHHHHHhcCCCEEEEEECcCCCCCCCC-----CCCCHHHHHHHHHHcCCCEEEeccH
Confidence 5666655445543 55556666678889988877777544311 2236778899999999999996654
No 218
>PRK06703 flavodoxin; Provisional
Probab=31.02 E-value=3.3e+02 Score=23.09 Aligned_cols=101 Identities=13% Similarity=0.077 Sum_probs=47.5
Q ss_pred CHHHHHHHHHHhCCceeceeeeecCCCceEEEeccCcCCCcEEEEcc-CCC--CchhHHHHHHHHHHHHHhcCCCeEEEE
Q 018472 107 NPALSQEIACYMGVELGKINIKRFADGEIYVQLQESVRGCDVYLVQP-TCP--PANENLMELLIMIDACRRASAKNITAV 183 (355)
Q Consensus 107 ~~~LA~~Ia~~Lg~~l~~~~~~~FpDGE~~v~i~~~VrG~dV~iiqs-~~~--p~nd~lmELll~idalr~~~a~~ItlV 183 (355)
+..+|+.|++.++..-..+++....+-+ ..++.+.|.+++.+ +.. ...+++..++-.+..+ ....+.+. +
T Consensus 15 T~~iA~~ia~~l~~~g~~v~~~~~~~~~-----~~~l~~~d~viigspt~~~g~~p~~~~~f~~~l~~~-~l~~k~~~-v 87 (151)
T PRK06703 15 TEDIADLIKVSLDAFDHEVVLQEMDGMD-----AEELLAYDGIILGSYTWGDGDLPYEAEDFHEDLENI-DLSGKKVA-V 87 (151)
T ss_pred HHHHHHHHHHHHHhcCCceEEEehhhCC-----HHHHhcCCcEEEEECCCCCCcCcHHHHHHHHHHhcC-CCCCCEEE-E
Confidence 4589999999985433333433332211 12355567666654 321 1112343333333221 12233443 3
Q ss_pred eeCccccccccccCCCCcchHHHHHHHHHHhCCCEEE
Q 018472 184 IPYFGYARADRKTQGRESIAAKLVANLITEAGADRVL 220 (355)
Q Consensus 184 iPY~~YaRqDr~~~~ge~isak~vA~lL~~~G~d~Vi 220 (355)
+-. |.+. . +.-.-..+.+.++|+..|+..+.
T Consensus 88 fg~--g~~~---y-~~~~~a~~~l~~~l~~~G~~~~~ 118 (151)
T PRK06703 88 FGS--GDTA---Y-PLFCEAVTIFEERLVERGAELVQ 118 (151)
T ss_pred Ecc--CCCC---h-HHHHHHHHHHHHHHHHCCCEEcc
Confidence 221 1111 1 00123467789999999985543
No 219
>PRK05500 bifunctional orotidine 5'-phosphate decarboxylase/orotate phosphoribosyltransferase protein; Validated
Probab=31.01 E-value=1.5e+02 Score=31.19 Aligned_cols=75 Identities=9% Similarity=0.007 Sum_probs=46.8
Q ss_pred CCCHHHHHHHHHHhCCceeceeeeecCCCceEEEeccCcCCCcEEEEccCCCCchhHHHHHHHHHHHHHhcCCCeEEEEe
Q 018472 105 TANPALSQEIACYMGVELGKINIKRFADGEIYVQLQESVRGCDVYLVQPTCPPANENLMELLIMIDACRRASAKNITAVI 184 (355)
Q Consensus 105 ~~~~~LA~~Ia~~Lg~~l~~~~~~~FpDGE~~v~i~~~VrG~dV~iiqs~~~p~nd~lmELll~idalr~~~a~~ItlVi 184 (355)
...-.+|..+|..||.++.-+.-..=..|+..+.-..-.+|++|+||...-.. -..+ +-.++.+|++|++ |..++
T Consensus 353 ~gGiPlAt~lA~~lg~p~v~vRKe~K~~G~~~~ieG~~~~G~rVlIVDDViTT-GgSi---~eaie~l~~aG~~-V~~v~ 427 (477)
T PRK05500 353 YGSLPTATGLALHLHHPMIFPRKEVKAHGTRRLIEGNFHPGETVVVVDDILIT-GKSV---MEGAEKLKSAGLN-VRDIV 427 (477)
T ss_pred cchHHHHHHHHHHhCCCEEEEecCcCccCCCceEecCCCCcCEEEEEEecccc-CHHH---HHHHHHHHHCCCE-EEEEE
Confidence 34569999999999999854433333367655433222378999998764322 1334 4456888888874 44333
No 220
>COG0770 MurF UDP-N-acetylmuramyl pentapeptide synthase [Cell envelope biogenesis, outer membrane]
Probab=30.91 E-value=3.2e+02 Score=28.53 Aligned_cols=143 Identities=18% Similarity=0.151 Sum_probs=83.4
Q ss_pred CHHHHHHHHHHhCCceecee--eee--cCCCceEEEeccCcCCCcEEEEccCCCCchhHHHHHHHHHHHHHhcCCCeEEE
Q 018472 107 NPALSQEIACYMGVELGKIN--IKR--FADGEIYVQLQESVRGCDVYLVQPTCPPANENLMELLIMIDACRRASAKNITA 182 (355)
Q Consensus 107 ~~~LA~~Ia~~Lg~~l~~~~--~~~--FpDGE~~v~i~~~VrG~dV~iiqs~~~p~nd~lmELll~idalr~~~a~~Itl 182 (355)
|--.|..+|..||+++.++. +.. -..|-..... .+..+.||...+ +.|.+ -+...++++......+..+
T Consensus 287 NalaA~a~a~~lG~~~e~i~~~L~~~~~~~gR~~~~~----~~~g~~iIdD~Y-NAnp~--sm~aai~~l~~~~~~~~i~ 359 (451)
T COG0770 287 NALAAAALALELGLDLEEIAAGLKELKPVKGRLEVIL----LANGKTLIDDSY-NANPD--SMRAALDLLAALPGRKGIA 359 (451)
T ss_pred HHHHHHHHHHHcCCCHHHHHHHHHhcCCCCccceeEe----cCCCcEEEEcCC-CCCHH--HHHHHHHHHhhCccCCcEE
Confidence 55778889999999877655 232 3333333222 134555565544 23433 4466677777776666568
Q ss_pred EeeCcc-ccccccccCCCCcchHHHHHHHHHHhCCCEEEEccCCchhhhcccCCccccccchHHHHHHHHhhcCCCCCeE
Q 018472 183 VIPYFG-YARADRKTQGRESIAAKLVANLITEAGADRVLACDLHSGQSMGYFDIPVDHVYCQPVILDYLASKTVSSNDLV 261 (355)
Q Consensus 183 ViPY~~-YaRqDr~~~~ge~isak~vA~lL~~~G~d~VitvDlHs~~~~~~F~ip~~~l~a~~~La~~L~~~~~~~~~~v 261 (355)
|++-|. +... +.-.=+.+++.+...++|+++.+--+...+...+.....+....+.+.+.|.... ...+.+
T Consensus 360 VlGdM~ELG~~-------s~~~H~~v~~~~~~~~~d~v~~~G~~~~~i~~~~~~~~~~f~~~~~l~~~l~~~l-~~gd~v 431 (451)
T COG0770 360 VLGDMLELGEE-------SEELHEEVGEYAVEAGIDLVFLVGELSKAIAEALGNKGIYFADKEELITSLKALL-RKGDVV 431 (451)
T ss_pred EeCChhhhCcc-------HHHHHHHHHHHHHhcCceEEEEEccchHHHHHhcCCCeEecCCHHHHHHHHHHhc-CCCCEE
Confidence 887663 2211 1222345677777788999999887776665444433334444557777777654 234445
Q ss_pred EEe
Q 018472 262 VVS 264 (355)
Q Consensus 262 VVs 264 (355)
+|-
T Consensus 432 LvK 434 (451)
T COG0770 432 LVK 434 (451)
T ss_pred EEE
Confidence 543
No 221
>PRK02102 ornithine carbamoyltransferase; Validated
Probab=30.78 E-value=5.5e+02 Score=25.61 Aligned_cols=38 Identities=21% Similarity=0.174 Sum_probs=26.4
Q ss_pred cCCCCCEEEEEeCcccchHHHHHHHHHHHHcCCCEEEEEEE
Q 018472 305 GDVKGKVAVMVDDMIDTAGTIAKGAALLHQEGAREVYACCT 345 (355)
Q Consensus 305 gdVkGK~VLIVDDIIdTG~Tl~~aa~~Lk~~GA~~V~v~~t 345 (355)
|.++|++|.+|=|+- . +++...+..+...|+ .|.+++.
T Consensus 151 g~l~g~~va~vGd~~-~-~v~~Sl~~~~~~~g~-~v~~~~P 188 (331)
T PRK02102 151 GPLKGLKLAYVGDGR-N-NMANSLMVGGAKLGM-DVRICAP 188 (331)
T ss_pred CCCCCCEEEEECCCc-c-cHHHHHHHHHHHcCC-EEEEECC
Confidence 678899999998883 2 366666667777785 5555543
No 222
>COG2185 Sbm Methylmalonyl-CoA mutase, C-terminal domain/subunit (cobalamin-binding) [Lipid metabolism]
Probab=30.47 E-value=3.8e+02 Score=23.67 Aligned_cols=63 Identities=21% Similarity=0.302 Sum_probs=38.0
Q ss_pred CcchHHHHHHHHHHhCCCEEEEccCCchhhhcccCCccccccchHHHHH-HHHhhcCCCCCeEEEecCCChhHHHHHHHH
Q 018472 200 ESIAAKLVANLITEAGADRVLACDLHSGQSMGYFDIPVDHVYCQPVILD-YLASKTVSSNDLVVVSPDVGGVARARAFAK 278 (355)
Q Consensus 200 e~isak~vA~lL~~~G~d~VitvDlHs~~~~~~F~ip~~~l~a~~~La~-~L~~~~~~~~~~vVVspd~Ggv~rA~~lA~ 278 (355)
.-..++.++++|..+|++-+.+ +.|.-| .+.++ .+.+ +-+-.++.+.+.+....+..+-+
T Consensus 25 Hd~gakvia~~l~d~GfeVi~~---------g~~~tp-------~e~v~aA~~~---dv~vIgvSsl~g~h~~l~~~lve 85 (143)
T COG2185 25 HDRGAKVIARALADAGFEVINL---------GLFQTP-------EEAVRAAVEE---DVDVIGVSSLDGGHLTLVPGLVE 85 (143)
T ss_pred cccchHHHHHHHHhCCceEEec---------CCcCCH-------HHHHHHHHhc---CCCEEEEEeccchHHHHHHHHHH
Confidence 3456999999999999887665 444432 22332 2332 22333455566666677777776
Q ss_pred HcC
Q 018472 279 KLS 281 (355)
Q Consensus 279 ~L~ 281 (355)
.|.
T Consensus 86 ~lr 88 (143)
T COG2185 86 ALR 88 (143)
T ss_pred HHH
Confidence 663
No 223
>cd01527 RHOD_YgaP Member of the Rhodanese Homology Domain superfamily. This CD includes Escherichia coli YgaP, and similar uncharacterized putative rhodanese-related sulfurtransferases.
Probab=30.17 E-value=77 Score=24.73 Aligned_cols=32 Identities=16% Similarity=0.156 Sum_probs=25.0
Q ss_pred CCCEEEEEeCcccchHHHHHHHHHHHHcCCCEEEE
Q 018472 308 KGKVAVMVDDMIDTAGTIAKGAALLHQEGAREVYA 342 (355)
Q Consensus 308 kGK~VLIVDDIIdTG~Tl~~aa~~Lk~~GA~~V~v 342 (355)
+++.|++ +|.+|.....++..|++.|...|+.
T Consensus 53 ~~~~iv~---~c~~g~~s~~~~~~L~~~g~~~v~~ 84 (99)
T cd01527 53 GANAIIF---HCRSGMRTQQNAERLAAISAGEAYV 84 (99)
T ss_pred CCCcEEE---EeCCCchHHHHHHHHHHcCCccEEE
Confidence 3566666 4788998899999999999887653
No 224
>PRK11557 putative DNA-binding transcriptional regulator; Provisional
Probab=29.80 E-value=1.1e+02 Score=28.94 Aligned_cols=80 Identities=19% Similarity=0.122 Sum_probs=49.7
Q ss_pred CCCEEEEECCCCHHHHHHHHHHhCCceeceeeeecCCCceEEEeccCcCCCcEEEEccCCCCchhHHHHHHHHHHHHHhc
Q 018472 96 NNRIKLFSGTANPALSQEIACYMGVELGKINIKRFADGEIYVQLQESVRGCDVYLVQPTCPPANENLMELLIMIDACRRA 175 (355)
Q Consensus 96 ~~~~~ifsg~~~~~LA~~Ia~~Lg~~l~~~~~~~FpDGE~~v~i~~~VrG~dV~iiqs~~~p~nd~lmELll~idalr~~ 175 (355)
.+++.+++...+..+|+.++..|.. ++... .-..|..........+.-+||+|+=|.+.. +.+ +.-++..+|+.
T Consensus 128 a~~I~i~G~G~s~~~A~~~~~~l~~-~g~~~-~~~~d~~~~~~~~~~~~~~Dv~I~iS~sg~-~~~---~~~~~~~ak~~ 201 (278)
T PRK11557 128 ARRIILTGIGASGLVAQNFAWKLMK-IGINA-VAERDMHALLATVQALSPDDLLLAISYSGE-RRE---LNLAADEALRV 201 (278)
T ss_pred CCeEEEEecChhHHHHHHHHHHHhh-CCCeE-EEcCChHHHHHHHHhCCCCCEEEEEcCCCC-CHH---HHHHHHHHHHc
Confidence 4568888887888999999988753 33221 223444322222234555789888777543 443 45566788888
Q ss_pred CCCeEE
Q 018472 176 SAKNIT 181 (355)
Q Consensus 176 ~a~~It 181 (355)
|++-|.
T Consensus 202 ga~iI~ 207 (278)
T PRK11557 202 GAKVLA 207 (278)
T ss_pred CCCEEE
Confidence 986554
No 225
>cd01524 RHOD_Pyr_redox Member of the Rhodanese Homology Domain superfamily. Included in this CD are the Lactococcus lactis NADH oxidase, Bacillus cereus NADH dehydrogenase, and Bacteroides thetaiotaomicron pyridine nucleotide-disulphide oxidoreductase, and similar rhodanese-like domains found C-terminal of the pyridine nucleotide-disulphide oxidoreductase (Pyr-redox) domain and the Pyr-redox dimerization domain.
Probab=29.66 E-value=96 Score=23.85 Aligned_cols=31 Identities=19% Similarity=0.058 Sum_probs=23.7
Q ss_pred CCEEEEEeCcccchHHHHHHHHHHHHcCCCEEEEE
Q 018472 309 GKVAVMVDDMIDTAGTIAKGAALLHQEGAREVYAC 343 (355)
Q Consensus 309 GK~VLIVDDIIdTG~Tl~~aa~~Lk~~GA~~V~v~ 343 (355)
++.++++.+ +|.....++..|++.|. +|+.+
T Consensus 51 ~~~vvl~c~---~g~~a~~~a~~L~~~G~-~v~~l 81 (90)
T cd01524 51 DKEIIVYCA---VGLRGYIAARILTQNGF-KVKNL 81 (90)
T ss_pred CCcEEEEcC---CChhHHHHHHHHHHCCC-CEEEe
Confidence 467788854 68888889999999998 66543
No 226
>cd05009 SIS_GlmS_GlmD_2 SIS (Sugar ISomerase) domain repeat 2 found in Glucosamine 6-phosphate synthase (GlmS) and Glucosamine-6-phosphate deaminase (GlmD). The SIS domain is found in many phosphosugar isomerases and phosphosugar binding proteins. GlmS contains a N-terminal glutaminase domain and two C-terminal SIS domains and catalyzes the first step in hexosamine metabolism, converting fructose 6-phosphate into glucosamine 6-phosphate using glutamine as nitrogen source. The glutaminase domain hydrolyzes glutamine to glutamate and ammonia. Ammonia is transferred through a channel to the isomerase domain for glucosamine 6-phosphate synthesis. The end product of the pathway is N-acetylglucosamine, which plays multiple roles in eukaryotic cells including being a building block of bacterial and fungal cell walls. In the absence of glutamine, GlmS catalyzes the isomerization of fructose 6-phosphate into glucose 6- phosphate (PGI-like activity). Glucosamine-6-phosphate deaminase (GlmD) cont
Probab=29.52 E-value=1.5e+02 Score=24.70 Aligned_cols=81 Identities=15% Similarity=0.050 Sum_probs=50.6
Q ss_pred CCCEEEEECCCCHHHHHHHHHHhCCceeceeeeecCCCceEEEeccCcCCCcEEEEccCCCCchhHHHHHHHHHHHHHhc
Q 018472 96 NNRIKLFSGTANPALSQEIACYMGVELGKINIKRFADGEIYVQLQESVRGCDVYLVQPTCPPANENLMELLIMIDACRRA 175 (355)
Q Consensus 96 ~~~~~ifsg~~~~~LA~~Ia~~Lg~~l~~~~~~~FpDGE~~v~i~~~VrG~dV~iiqs~~~p~nd~lmELll~idalr~~ 175 (355)
.+.+.+++.-.+...|.+.+-++--- +.+...-+.++|..---.+.+...+++|+-+.... .--++.-++..+|+.
T Consensus 13 ~~~i~~~G~G~s~~~a~e~~~kl~e~-~~i~~~~~~~~e~~hg~~~~~~~~~~vi~is~~g~---t~~~~~~~~~~~~~~ 88 (153)
T cd05009 13 AKSFYVLGRGPNYGTALEGALKLKET-SYIHAEAYSAGEFKHGPIALVDEGTPVIFLAPEDR---LEEKLESLIKEVKAR 88 (153)
T ss_pred cCcEEEEcCCCCHHHHHHHHHHHHHH-HhhcceeccHHHhccChhhhccCCCcEEEEecCCh---hHHHHHHHHHHHHHc
Confidence 45576776556777888877776533 45666677777776655556655676666553322 222345577888888
Q ss_pred CCCeE
Q 018472 176 SAKNI 180 (355)
Q Consensus 176 ~a~~I 180 (355)
+++-|
T Consensus 89 ~~~vi 93 (153)
T cd05009 89 GAKVI 93 (153)
T ss_pred CCEEE
Confidence 87444
No 227
>PLN02469 hydroxyacylglutathione hydrolase
Probab=29.17 E-value=74 Score=30.34 Aligned_cols=40 Identities=28% Similarity=0.214 Sum_probs=29.3
Q ss_pred cCCCCCEEEEEeCcccchHHHHHHHHHHHHcCCCEEEEEEEcccc
Q 018472 305 GDVKGKVAVMVDDMIDTAGTIAKGAALLHQEGAREVYACCTHAVF 349 (355)
Q Consensus 305 gdVkGK~VLIVDDIIdTG~Tl~~aa~~Lk~~GA~~V~v~~tHglf 349 (355)
.+-.++.++|||- | ......+.|++.|..-.+++.||+=+
T Consensus 18 ~d~~~~~~vlIDp----~-~~~~il~~l~~~g~~l~~Il~TH~H~ 57 (258)
T PLN02469 18 IDESTKDAAVVDP----V-DPEKVLQAAHEHGAKIKLVLTTHHHW 57 (258)
T ss_pred EeCCCCeEEEECC----C-ChHHHHHHHHHcCCcccEEEecCCCC
Confidence 3445678999994 3 34667777888898778999999743
No 228
>KOG4203 consensus Armadillo/beta-Catenin/plakoglobin [Signal transduction mechanisms; Cytoskeleton]
Probab=29.15 E-value=1e+02 Score=32.40 Aligned_cols=75 Identities=17% Similarity=0.218 Sum_probs=48.1
Q ss_pred EEecCCChhHHHHHHHHHcCCCCEEEEEEeecCCCee-EE--EeeecCCCCCEEEEEeCcccchHHHHHHHHHHHHcCC
Q 018472 262 VVSPDVGGVARARAFAKKLSDAPLAIVDKRRHGHNVA-EV--MNLIGDVKGKVAVMVDDMIDTAGTIAKGAALLHQEGA 337 (355)
Q Consensus 262 VVspd~Ggv~rA~~lA~~L~~~p~~~v~K~R~~~~~~-e~--~~l~gdVkGK~VLIVDDIIdTG~Tl~~aa~~Lk~~GA 337 (355)
.|+....|-.....+.....+.++.-+--+|..+... +. ..+..+.... |++.|-+++||++...|...|.++|.
T Consensus 337 gv~i~r~g~~~~~alr~~~~~vri~~il~qr~~~t~~~~l~~~~lP~~is~~-V~ll~p~~~tg~~~~~a~~~ll~~gv 414 (473)
T KOG4203|consen 337 GVSIPRSGESMETALRAACKGVRIGKILIQRDEETGEPELHYEKLPKDISDR-VLLLDPVLATGNSAMMAIILLLDHGV 414 (473)
T ss_pred cCCCCcchhHHHHHHHHHcCCceeeeeEeechhhccchhhhhhhCccccccc-eeeecchhhcchhHHHHHHHHHhCCC
Confidence 3555566666666666555445554443345432211 11 1233455555 99999999999999999999999994
No 229
>PRK11382 frlB fructoselysine-6-P-deglycase; Provisional
Probab=28.90 E-value=1.2e+02 Score=29.99 Aligned_cols=81 Identities=11% Similarity=0.103 Sum_probs=46.2
Q ss_pred CCEEEEECCCCHHHHHHHHHHhCCceeceeeeecCCCceEEEeccCcCCCcEEEEccCCCCchhHHHHHHHHHHHHHhcC
Q 018472 97 NRIKLFSGTANPALSQEIACYMGVELGKINIKRFADGEIYVQLQESVRGCDVYLVQPTCPPANENLMELLIMIDACRRAS 176 (355)
Q Consensus 97 ~~~~ifsg~~~~~LA~~Ia~~Lg~~l~~~~~~~FpDGE~~v~i~~~VrG~dV~iiqs~~~p~nd~lmELll~idalr~~~ 176 (355)
+++.++ |..+...+...++.+=.++..+.+.-+.+.|....-......++++|.-|.+.. +. |++-++..+|+.|
T Consensus 45 ~~I~~~-g~GsS~~aa~~~~~~~~k~~~i~v~~~~~~~~~~~~~~~~~~~~lvI~iS~SGe-T~---e~i~al~~ak~~G 119 (340)
T PRK11382 45 DRIYFV-ACGSPLNAAQTAKHLADRFSDLQVYAISGWEFCDNTPYRLDDRCAVIGVSDYGK-TE---EVIKALELGRACG 119 (340)
T ss_pred CEEEEE-EechHHHHHHHHHHHHHHHcCCCeEEeccHHHHhcCCcCCCCCCEEEEEcCCCC-CH---HHHHHHHHHHHcC
Confidence 446555 444445555454433222333335567887776544444555688887665543 22 5566777888889
Q ss_pred CCeEEE
Q 018472 177 AKNITA 182 (355)
Q Consensus 177 a~~Itl 182 (355)
++.|.+
T Consensus 120 a~~I~I 125 (340)
T PRK11382 120 ALTAAF 125 (340)
T ss_pred CeEEEE
Confidence 865543
No 230
>PRK11337 DNA-binding transcriptional repressor RpiR; Provisional
Probab=28.85 E-value=1.1e+02 Score=29.26 Aligned_cols=80 Identities=15% Similarity=0.298 Sum_probs=49.6
Q ss_pred CCCEEEEECCCCHHHHHHHHHHhCCceeceeeeecCCCceEEEeccCcCCCcEEEEccCCCCchhHHHHHHHHHHHHHhc
Q 018472 96 NNRIKLFSGTANPALSQEIACYMGVELGKINIKRFADGEIYVQLQESVRGCDVYLVQPTCPPANENLMELLIMIDACRRA 175 (355)
Q Consensus 96 ~~~~~ifsg~~~~~LA~~Ia~~Lg~~l~~~~~~~FpDGE~~v~i~~~VrG~dV~iiqs~~~p~nd~lmELll~idalr~~ 175 (355)
..++.+|+...+..+|+.++.+|.- ++ ....-++|.+........+...|++|+=|.+.. +. |+.-++..+|+.
T Consensus 140 A~~I~i~G~G~S~~~A~~l~~~l~~-~g-~~~~~~~d~~~~~~~~~~~~~~Dl~I~iS~sG~-t~---~~~~~~~~ak~~ 213 (292)
T PRK11337 140 ARQRDLYGAGGSAAIARDVQHKFLR-IG-VRCQAYDDAHIMLMSAALLQEGDVVLVVSHSGR-TS---DVIEAVELAKKN 213 (292)
T ss_pred CCeEEEEEecHHHHHHHHHHHHHhh-CC-CeEEEcCCHHHHHHHHhcCCCCCEEEEEeCCCC-CH---HHHHHHHHHHHC
Confidence 3557778766777888888887652 22 223345665433222233455799888776543 23 456677889999
Q ss_pred CCCeEE
Q 018472 176 SAKNIT 181 (355)
Q Consensus 176 ~a~~It 181 (355)
|++-|.
T Consensus 214 g~~ii~ 219 (292)
T PRK11337 214 GAKIIC 219 (292)
T ss_pred CCeEEE
Confidence 986554
No 231
>PRK07432 5'-methylthioadenosine phosphorylase; Provisional
Probab=28.62 E-value=1.1e+02 Score=29.99 Aligned_cols=82 Identities=10% Similarity=0.081 Sum_probs=47.1
Q ss_pred CCCEEEEECCCCHHHHHHHHHHhCCceeceeeeecCCCceEEEeccCcCCCcEEEE--ccCCCCchhHHHHHHHHHHHHH
Q 018472 96 NNRIKLFSGTANPALSQEIACYMGVELGKINIKRFADGEIYVQLQESVRGCDVYLV--QPTCPPANENLMELLIMIDACR 173 (355)
Q Consensus 96 ~~~~~ifsg~~~~~LA~~Ia~~Lg~~l~~~~~~~FpDGE~~v~i~~~VrG~dV~ii--qs~~~p~nd~lmELll~idalr 173 (355)
..++-|+.|+.--.|+ .+... .+..--....||.|++.+ ..+.|++|+++ |...+.....-+..--.+.++|
T Consensus 3 ~~~igIIgGSGl~~l~-~l~~~--~~~~~~tp~G~ps~~l~~---G~l~g~~v~~l~RhGr~H~y~p~~i~~rAni~alk 76 (290)
T PRK07432 3 QAKIGIIGGSGLYKME-ALKDV--EEVQLETPFGSPSDALIV---GTLDGTRVAFLARHGRNHTLLPTELPFRANIYAMK 76 (290)
T ss_pred CCcEEEEecCccCChh-hcCcc--eEEEeeCCCCCCCCCEEE---EEECCEEEEEEECCCCCCccChhhcCcHHHHHHHH
Confidence 4468899999876665 22111 111111222456666655 45668899998 5433322222233344578999
Q ss_pred hcCCCeEEEE
Q 018472 174 RASAKNITAV 183 (355)
Q Consensus 174 ~~~a~~ItlV 183 (355)
..|+++|.+.
T Consensus 77 ~lGv~~ii~t 86 (290)
T PRK07432 77 QLGVEYLISA 86 (290)
T ss_pred HcCCCEEEEE
Confidence 9999988754
No 232
>PLN02160 thiosulfate sulfurtransferase
Probab=28.47 E-value=88 Score=26.72 Aligned_cols=33 Identities=12% Similarity=0.069 Sum_probs=26.8
Q ss_pred CCCEEEEEeCcccchHHHHHHHHHHHHcCCCEEEEE
Q 018472 308 KGKVAVMVDDMIDTAGTIAKGAALLHQEGAREVYAC 343 (355)
Q Consensus 308 kGK~VLIVDDIIdTG~Tl~~aa~~Lk~~GA~~V~v~ 343 (355)
++++++++ |.+|.+-..+++.|++.|.+.|+.+
T Consensus 80 ~~~~Iivy---C~sG~RS~~Aa~~L~~~G~~~v~~l 112 (136)
T PLN02160 80 PADDILVG---CQSGARSLKATTELVAAGYKKVRNK 112 (136)
T ss_pred CCCcEEEE---CCCcHHHHHHHHHHHHcCCCCeeec
Confidence 35667776 6799999999999999999887643
No 233
>PLN02527 aspartate carbamoyltransferase
Probab=28.28 E-value=5.8e+02 Score=25.05 Aligned_cols=39 Identities=23% Similarity=0.347 Sum_probs=26.0
Q ss_pred cCCCCCEEEEEeCcccchHHHHHHHHHHHHc-CCCEEEEEEE
Q 018472 305 GDVKGKVAVMVDDMIDTAGTIAKGAALLHQE-GAREVYACCT 345 (355)
Q Consensus 305 gdVkGK~VLIVDDIIdTG~Tl~~aa~~Lk~~-GA~~V~v~~t 345 (355)
|+++|.+|.+|=|+-. |.+....+..+... |+ .|.+++.
T Consensus 147 g~l~g~kva~vGD~~~-~rv~~Sl~~~~~~~~g~-~v~~~~P 186 (306)
T PLN02527 147 GRLDGIKVGLVGDLAN-GRTVRSLAYLLAKYEDV-KIYFVAP 186 (306)
T ss_pred CCcCCCEEEEECCCCC-ChhHHHHHHHHHhcCCC-EEEEECC
Confidence 5788999999998863 45666666666555 53 4655554
No 234
>PLN02342 ornithine carbamoyltransferase
Probab=27.50 E-value=6.5e+02 Score=25.35 Aligned_cols=147 Identities=16% Similarity=0.133 Sum_probs=84.7
Q ss_pred CcCCCcEEEEccCCCCchhHHHHHHHHHHHHHhcCCCeEEEEeeCccccccccccCCCCcchHHHHHHHHHHhCCCEEEE
Q 018472 142 SVRGCDVYLVQPTCPPANENLMELLIMIDACRRASAKNITAVIPYFGYARADRKTQGRESIAAKLVANLITEAGADRVLA 221 (355)
Q Consensus 142 ~VrG~dV~iiqs~~~p~nd~lmELll~idalr~~~a~~ItlViPY~~YaRqDr~~~~ge~isak~vA~lL~~~G~d~Vit 221 (355)
...|+.+..+ +..|... --+-+--|+++.|++-|.+ . -++-....||+ .+..++.|+.+ +|-|+.
T Consensus 82 ~L~gk~va~l--F~epSTR---TR~SFE~A~~~LGg~~i~l--~-----~~~ss~~kGES--l~DTarvLs~y-~D~Ivi 146 (348)
T PLN02342 82 PFKGKSMAMI--FTKPSMR---TRVSFETGFFLLGGHALYL--G-----PDDIQLGKREE--TRDIARVLSRY-NDIIMA 146 (348)
T ss_pred cCCCCEEEEE--ecCCCcc---hHHHHHHHHHHcCCcEEEe--C-----cccccCCCCcC--HHHHHHHHHHh-CCEEEE
Confidence 3567776644 1222111 1244556788999977763 1 12233456786 57889999987 788875
Q ss_pred ccCCchhhhcccCCccccccchHHHHHHHHhhcCCCCCeEEEecCCChhHHHHHHHHHcCCCCEEEEEEeecCCCeeEEE
Q 018472 222 CDLHSGQSMGYFDIPVDHVYCQPVILDYLASKTVSSNDLVVVSPDVGGVARARAFAKKLSDAPLAIVDKRRHGHNVAEVM 301 (355)
Q Consensus 222 vDlHs~~~~~~F~ip~~~l~a~~~La~~L~~~~~~~~~~vVVspd~Ggv~rA~~lA~~L~~~p~~~v~K~R~~~~~~e~~ 301 (355)
= -+ ....++.+.+. ..-+||=+ ..+...-.+.+++.+- + .
T Consensus 147 R---------~~---------~~~~~~~la~~---~~vPVINA-~~~~~HPtQaLaDl~T-i-----------------~ 186 (348)
T PLN02342 147 R---------VF---------AHQDVLDLAEY---SSVPVING-LTDYNHPCQIMADALT-I-----------------I 186 (348)
T ss_pred e---------CC---------ChHHHHHHHHh---CCCCEEEC-CCCCCChHHHHHHHHH-H-----------------H
Confidence 1 01 11122333332 23345544 4455677888887663 1 0
Q ss_pred eeecCCCCCEEEEEeCcccchHHHHHHHHHHHHcCCCEEEEEEEcc
Q 018472 302 NLIGDVKGKVAVMVDDMIDTAGTIAKGAALLHQEGAREVYACCTHA 347 (355)
Q Consensus 302 ~l~gdVkGK~VLIVDDIIdTG~Tl~~aa~~Lk~~GA~~V~v~~tHg 347 (355)
+..|+++|.+|.+|=|.- .|....+..+...|+ +|.+++.=+
T Consensus 187 e~~G~l~glkva~vGD~~---nva~Sli~~~~~~G~-~v~~~~P~~ 228 (348)
T PLN02342 187 EHIGRLEGTKVVYVGDGN---NIVHSWLLLAAVLPF-HFVCACPKG 228 (348)
T ss_pred HHhCCcCCCEEEEECCCc---hhHHHHHHHHHHcCC-EEEEECCcc
Confidence 123678899999998864 466666667777886 466555433
No 235
>cd01525 RHOD_Kc Member of the Rhodanese Homology Domain superfamily. Included in this CD are the rhodanese-like domains found C-terminal of the serine/threonine protein kinases catalytic (S_TKc) domain and the Tre-2, BUB2p, Cdc16p (TBC) domain. The putative active site Cys residue is not present in this CD.
Probab=27.50 E-value=1e+02 Score=24.15 Aligned_cols=31 Identities=32% Similarity=0.340 Sum_probs=24.9
Q ss_pred CCEEEEEeCcccchHHHHHHHHHHHHcCCCEEEE
Q 018472 309 GKVAVMVDDMIDTAGTIAKGAALLHQEGAREVYA 342 (355)
Q Consensus 309 GK~VLIVDDIIdTG~Tl~~aa~~Lk~~GA~~V~v 342 (355)
++.|++++ ++|.+...++..|+..|...|+.
T Consensus 65 ~~~vv~~c---~~g~~s~~~a~~L~~~G~~~v~~ 95 (105)
T cd01525 65 GKIIVIVS---HSHKHAALFAAFLVKCGVPRVCI 95 (105)
T ss_pred CCeEEEEe---CCCccHHHHHHHHHHcCCCCEEE
Confidence 67788875 56777788888999999988874
No 236
>PF02633 Creatininase: Creatinine amidohydrolase; InterPro: IPR003785 This family includes the enzymes creatininase and 2-amino-5-formylamino-6-ribosylaminopyrimidin-4(3H)-one 5'-monophosphate deformylase, also known as formamide hydrolase. Creatinase or creatinine amidohydrolase (3.5.2.10 from EC) catalyses the hydrolysis of creatinine to creatine, which can then be metabolised to urea and sarcosine by creatinase (3.5.3.3 from EC). Creatininase is a member of the urease-related amidohydrolase superfamily []. Formamide hydrolase catalyzes the hydrolysis of the formamide of 2-amino-5-formylamino-6-ribosylamino-4(3H)-pyrimidinone 5'-monophosphate (FAPy) to form 2,5-diamino-6-ribosylamino-4(3H)-pyrimidinone 5'-phosphate (APy) (3.5.1.102 from EC). ; PDB: 3A6K_F 3A6F_A 3A6D_B 1J2U_B 3A6J_C 1J2T_A 3A6G_C 3A6H_F 1Q3K_E 3A6L_C ....
Probab=27.48 E-value=2.1e+02 Score=26.59 Aligned_cols=67 Identities=19% Similarity=0.339 Sum_probs=39.1
Q ss_pred hhHHHHHHHHHHHHHhcCCCeEEEEeeCcccccccc--ccCCCCcchHHHHHHH-------HHHhCCCEEEEccCCchh
Q 018472 159 NENLMELLIMIDACRRASAKNITAVIPYFGYARADR--KTQGRESIAAKLVANL-------ITEAGADRVLACDLHSGQ 228 (355)
Q Consensus 159 nd~lmELll~idalr~~~a~~ItlViPY~~YaRqDr--~~~~ge~isak~vA~l-------L~~~G~d~VitvDlHs~~ 228 (355)
.|.++--.+...++++.+. .+|+|=++|.=..- .|-+.-.+....+.++ |...|+.+|+.++=|-++
T Consensus 37 tD~~ia~~~a~~~a~~~~~---~lv~P~i~yG~s~~h~~fpGTisl~~~t~~~~l~di~~sl~~~Gf~~ivivngHgGN 112 (237)
T PF02633_consen 37 TDTLIAEAVAERAAERLGE---ALVLPPIPYGCSPHHMGFPGTISLSPETLIALLRDILRSLARHGFRRIVIVNGHGGN 112 (237)
T ss_dssp HHHHHHHHHHHHHHHHHTH---EEE---B--BB-GCCTTSTT-BBB-HHHHHHHHHHHHHHHHHHT--EEEEEESSTTH
T ss_pred HHHHHHHHHHHHHHHHCCc---EEEeCCCccccCcccCCCCCeEEeCHHHHHHHHHHHHHHHHHcCCCEEEEEECCHhH
Confidence 4888888888889998886 68999888766433 2322334544444333 445799999999988764
No 237
>PF13399 LytR_C: LytR cell envelope-related transcriptional attenuator
Probab=27.13 E-value=1.8e+02 Score=22.53 Aligned_cols=43 Identities=19% Similarity=0.288 Sum_probs=26.7
Q ss_pred CCEEEEECCCCHHHHHHHHHHhCCceeceeeeecCCCceEEEec
Q 018472 97 NRIKLFSGTANPALSQEIACYMGVELGKINIKRFADGEIYVQLQ 140 (355)
Q Consensus 97 ~~~~ifsg~~~~~LA~~Ia~~Lg~~l~~~~~~~FpDGE~~v~i~ 140 (355)
..-.|+.++.+..-|++|++.||.......- .-+++.+.|.+.
T Consensus 43 ~~t~I~y~~~~~~~A~~la~~l~~~~~~~~~-~~~~~~v~vvlG 85 (90)
T PF13399_consen 43 ETTTIYYGPGDEAAARELAAALGGAEIVVDP-DRQDADVVVVLG 85 (90)
T ss_pred CCEEEEECCCCHHHHHHHHHHCCCceEEecC-CCCCCCEEEEEe
Confidence 4456777888899999999999854322111 233444444443
No 238
>COG0503 Apt Adenine/guanine phosphoribosyltransferases and related PRPP-binding proteins [Nucleotide transport and metabolism]
Probab=26.45 E-value=3.1e+02 Score=24.69 Aligned_cols=76 Identities=18% Similarity=0.198 Sum_probs=44.0
Q ss_pred EEEEECCCCHHHHHHHHHHhCCceeceeeeecCCCceE------------EEecc-Cc-CCCcEEEEccCCCCchhHHHH
Q 018472 99 IKLFSGTANPALSQEIACYMGVELGKINIKRFADGEIY------------VQLQE-SV-RGCDVYLVQPTCPPANENLME 164 (355)
Q Consensus 99 ~~ifsg~~~~~LA~~Ia~~Lg~~l~~~~~~~FpDGE~~------------v~i~~-~V-rG~dV~iiqs~~~p~nd~lmE 164 (355)
.++-.-...-.||..+|.+||+++..+.-.+.--.|.+ +.+.. .+ +|+.|+||..+-..- . -
T Consensus 56 ~Iv~iea~Gi~~a~~vA~~Lgvp~v~vRK~~kl~~~~~~~~~~~~~~~~~l~~~~~~l~~G~rVlIVDDllaTG-g---T 131 (179)
T COG0503 56 KIVTIEARGIPLAAAVALELGVPFVPVRKKGKLPEESVVETYYLEYGSETLELHKDALKPGDRVLIVDDLLATG-G---T 131 (179)
T ss_pred EEEEEccccchhHHHHHHHhCCCEEEEEecCCCCCcceeEEEEEeccceEEEEEhhhCCCCCEEEEEecchhcC-h---H
Confidence 33333345668999999999988776655333322222 22222 22 477888876543211 1 2
Q ss_pred HHHHHHHHHhcCCC
Q 018472 165 LLIMIDACRRASAK 178 (355)
Q Consensus 165 Lll~idalr~~~a~ 178 (355)
+.-+++.++++|++
T Consensus 132 ~~a~~~Ll~~~ga~ 145 (179)
T COG0503 132 ALALIELLEQAGAE 145 (179)
T ss_pred HHHHHHHHHHCCCE
Confidence 45666777888885
No 239
>PF05728 UPF0227: Uncharacterised protein family (UPF0227); InterPro: IPR008886 Despite being classed as uncharacterised proteins, the members of this family are almost certainly enzymes in that they contain a domain distantly related to IPR000073 from INTERPRO. One of the members of this family YqiA has been shown to be a esterase []. Other members, which include the Escherichia coli (strain K12) YcfP protein are uncharacterised.
Probab=26.43 E-value=4.4e+02 Score=23.92 Aligned_cols=75 Identities=19% Similarity=0.302 Sum_probs=43.6
Q ss_pred CCcchHHHHHHHHHHhCCCE-EEEccCCchhhhcccCCccccccchHHHHHHHHhhcCCCCCeEEEecCCChhHHHHHHH
Q 018472 199 RESIAAKLVANLITEAGADR-VLACDLHSGQSMGYFDIPVDHVYCQPVILDYLASKTVSSNDLVVVSPDVGGVARARAFA 277 (355)
Q Consensus 199 ge~isak~vA~lL~~~G~d~-VitvDlHs~~~~~~F~ip~~~l~a~~~La~~L~~~~~~~~~~vVVspd~Ggv~rA~~lA 277 (355)
+++..++.+.+.+...+.+. +.+-|+ |...-.+...+-+.|.+. ..+++++||-..||. .|..+|
T Consensus 12 p~S~Ka~~l~~~~~~~~~~~~~~~p~l-----------~~~p~~a~~~l~~~i~~~--~~~~~~liGSSlGG~-~A~~La 77 (187)
T PF05728_consen 12 PQSFKAQALKQYFAEHGPDIQYPCPDL-----------PPFPEEAIAQLEQLIEEL--KPENVVLIGSSLGGF-YATYLA 77 (187)
T ss_pred CCCHHHHHHHHHHHHhCCCceEECCCC-----------CcCHHHHHHHHHHHHHhC--CCCCeEEEEEChHHH-HHHHHH
Confidence 45566778888888776542 333222 111111223333444432 234579999999998 577888
Q ss_pred HHcCCCCEEEE
Q 018472 278 KKLSDAPLAIV 288 (355)
Q Consensus 278 ~~L~~~p~~~v 288 (355)
.+++ ++.+.+
T Consensus 78 ~~~~-~~avLi 87 (187)
T PF05728_consen 78 ERYG-LPAVLI 87 (187)
T ss_pred HHhC-CCEEEE
Confidence 8886 666444
No 240
>PRK08105 flavodoxin; Provisional
Probab=26.07 E-value=1.9e+02 Score=25.11 Aligned_cols=109 Identities=18% Similarity=0.217 Sum_probs=55.1
Q ss_pred CEEEEECCC---CHHHHHHHHHHhCCceeceeeeecCCCceEEEeccCcCCCcEEEEccCCC---CchhHHHHHHHHHHH
Q 018472 98 RIKLFSGTA---NPALSQEIACYMGVELGKINIKRFADGEIYVQLQESVRGCDVYLVQPTCP---PANENLMELLIMIDA 171 (355)
Q Consensus 98 ~~~ifsg~~---~~~LA~~Ia~~Lg~~l~~~~~~~FpDGE~~v~i~~~VrG~dV~iiqs~~~---p~nd~lmELll~ida 171 (355)
++.||.||. +..+|++|++.|...-.++.+..-.| .. .+ +.....-|+++.||.. |+ ++..+++-.
T Consensus 3 ~i~I~YgS~tGnte~~A~~l~~~l~~~g~~~~~~~~~~--~~-~~-~~~~~~~vi~~~sT~G~Ge~p-~~~~~f~~~--- 74 (149)
T PRK08105 3 KVGIFVGTVYGNALLVAEEAEAILTAQGHEVTLFEDPE--LS-DW-QPYQDELVLVVTSTTGQGDLP-DSIVPLFQA--- 74 (149)
T ss_pred eEEEEEEcCchHHHHHHHHHHHHHHhCCCceEEechhh--CC-ch-hcccCCeEEEEECCCCCCCCC-hhHHHHHHH---
Confidence 577888766 45889999888853222333322222 11 11 1111245777778762 22 455554433
Q ss_pred HHhc----CCCeEEEEeeCccccccccccCCCCcchHHHHHHHHHHhCCCEEEE
Q 018472 172 CRRA----SAKNITAVIPYFGYARADRKTQGRESIAAKLVANLITEAGADRVLA 221 (355)
Q Consensus 172 lr~~----~a~~ItlViPY~~YaRqDr~~~~ge~isak~vA~lL~~~G~d~Vit 221 (355)
+++. .-+++. |+ .=-|+.. +.=.-.++.+.+.|...|+.+|..
T Consensus 75 l~~~~~~l~~~~~a-vf-----GlGds~Y-~~fc~~~~~ld~~l~~lGa~~v~~ 121 (149)
T PRK08105 75 LKDTAGYQPNLRYG-VI-----ALGDSSY-DNFCGAGKQFDALLQEQGAKRVGE 121 (149)
T ss_pred HHhcCcccCCCEEE-EE-----eeecCCH-HHHHHHHHHHHHHHHHCCCeEeec
Confidence 3332 112222 11 1111111 111234788899999999999874
No 241
>COG1737 RpiR Transcriptional regulators [Transcription]
Probab=26.06 E-value=1e+02 Score=29.56 Aligned_cols=80 Identities=15% Similarity=0.120 Sum_probs=51.0
Q ss_pred CCEEEEECCCCHHHHHHHHHHhCCceeceeeeecCCCceEEEeccCcCCCcEEEEccCCCCchhHHHHHHHHHHHHHhcC
Q 018472 97 NRIKLFSGTANPALSQEIACYMGVELGKINIKRFADGEIYVQLQESVRGCDVYLVQPTCPPANENLMELLIMIDACRRAS 176 (355)
Q Consensus 97 ~~~~ifsg~~~~~LA~~Ia~~Lg~~l~~~~~~~FpDGE~~v~i~~~VrG~dV~iiqs~~~p~nd~lmELll~idalr~~~ 176 (355)
..+.+|++.++..+|...+.+|.. -...+.-+.|..............||+|+=|.+.. + -|++-.++.+|+.|
T Consensus 131 ~rI~~~G~g~S~~vA~~~~~~l~~--ig~~~~~~~d~~~~~~~~~~~~~~Dv~i~iS~sG~-t---~e~i~~a~~ak~~g 204 (281)
T COG1737 131 RRIYFFGLGSSGLVASDLAYKLMR--IGLNVVALSDTHGQLMQLALLTPGDVVIAISFSGY-T---REIVEAAELAKERG 204 (281)
T ss_pred CeEEEEEechhHHHHHHHHHHHHH--cCCceeEecchHHHHHHHHhCCCCCEEEEEeCCCC-c---HHHHHHHHHHHHCC
Confidence 558888888888999999988742 11223344443332223345556788888887643 2 35566777888999
Q ss_pred CCeEEE
Q 018472 177 AKNITA 182 (355)
Q Consensus 177 a~~Itl 182 (355)
++-|.+
T Consensus 205 a~vIai 210 (281)
T COG1737 205 AKVIAI 210 (281)
T ss_pred CcEEEE
Confidence 866543
No 242
>cd04795 SIS SIS domain. SIS (Sugar ISomerase) domains are found in many phosphosugar isomerases and phosphosugar binding proteins. SIS domains are also found in proteins that regulate the expression of genes involved in synthesis of phosphosugars.
Probab=25.98 E-value=1.7e+02 Score=21.77 Aligned_cols=78 Identities=17% Similarity=0.131 Sum_probs=42.6
Q ss_pred EEECCCCHHHHHHHHHHhCCceeceeeeecCCCceEEEe-ccCcCCCcEEEEccCCCCchhHHHHHHHHHHHHHhcCCCe
Q 018472 101 LFSGTANPALSQEIACYMGVELGKINIKRFADGEIYVQL-QESVRGCDVYLVQPTCPPANENLMELLIMIDACRRASAKN 179 (355)
Q Consensus 101 ifsg~~~~~LA~~Ia~~Lg~~l~~~~~~~FpDGE~~v~i-~~~VrG~dV~iiqs~~~p~nd~lmELll~idalr~~~a~~ 179 (355)
+++.-++..+|+.++..|..-.+ ..+.-.++.+..... ......+|++|+=|.+.. +. |+.-+++.+|+.|++-
T Consensus 3 i~g~G~s~~~a~~~~~~l~~~~~-~~~~~~~~~~~~~~~~~~~~~~~d~~i~iS~sg~-t~---~~~~~~~~a~~~g~~i 77 (87)
T cd04795 3 VIGIGGSGAIAAYFALELLELTG-IEVVALIATELEHASLLSLLRKGDVVIALSYSGR-TE---ELLAALEIAKELGIPV 77 (87)
T ss_pred EEEcCHHHHHHHHHHHHHhcccC-CceEEeCCcHHHHHHHHhcCCCCCEEEEEECCCC-CH---HHHHHHHHHHHcCCeE
Confidence 44444566777777777654322 233333444432211 223445688877665443 23 3455668889999875
Q ss_pred EEEE
Q 018472 180 ITAV 183 (355)
Q Consensus 180 ItlV 183 (355)
|...
T Consensus 78 i~it 81 (87)
T cd04795 78 IAIT 81 (87)
T ss_pred EEEe
Confidence 5443
No 243
>cd01447 Polysulfide_ST Polysulfide-sulfurtransferase - Rhodanese Homology Domain. This domain is believed to serve as a polysulfide binding and transferase domain in anaerobic gram-negative bacteria, functioning in oxidative phosphorylation with polysulfide-sulfur as a terminal electron acceptor. The active site contains the same conserved cysteine that is the catalytic residue in other Rhodanese Homology Domain proteins.
Probab=25.91 E-value=67 Score=24.97 Aligned_cols=32 Identities=22% Similarity=0.200 Sum_probs=25.7
Q ss_pred CCCEEEEEeCcccchHHHHHHHHHHHHcCCCEEEE
Q 018472 308 KGKVAVMVDDMIDTAGTIAKGAALLHQEGAREVYA 342 (355)
Q Consensus 308 kGK~VLIVDDIIdTG~Tl~~aa~~Lk~~GA~~V~v 342 (355)
+++.++++++ +|.....++..|++.|...|+.
T Consensus 60 ~~~~ivv~c~---~g~~s~~~~~~l~~~G~~~v~~ 91 (103)
T cd01447 60 EDKPFVFYCA---SGWRSALAGKTLQDMGLKPVYN 91 (103)
T ss_pred CCCeEEEEcC---CCCcHHHHHHHHHHcChHHhEe
Confidence 4678899864 6777788899999999887764
No 244
>PRK05320 rhodanese superfamily protein; Provisional
Probab=25.65 E-value=1.2e+02 Score=29.15 Aligned_cols=33 Identities=24% Similarity=0.310 Sum_probs=29.2
Q ss_pred CCCCEEEEEeCcccchHHHHHHHHHHHHcCCCEEEE
Q 018472 307 VKGKVAVMVDDMIDTAGTIAKGAALLHQEGAREVYA 342 (355)
Q Consensus 307 VkGK~VLIVDDIIdTG~Tl~~aa~~Lk~~GA~~V~v 342 (355)
+++|.|+++ |++|..-..|+..|++.|-+.|+-
T Consensus 173 ~kdk~Ivvy---C~~G~Rs~~Aa~~L~~~Gf~~V~~ 205 (257)
T PRK05320 173 LAGKTVVSF---CTGGIRCEKAAIHMQEVGIDNVYQ 205 (257)
T ss_pred cCCCeEEEE---CCCCHHHHHHHHHHHHcCCcceEE
Confidence 478888888 899999999999999999988873
No 245
>cd01080 NAD_bind_m-THF_DH_Cyclohyd NADP binding domain of methylene-tetrahydrofolate dehydrogenase/cyclohydrolase. NADP binding domain of the Methylene-Tetrahydrofolate Dehydrogenase/cyclohydrolase (m-THF DH/cyclohydrolase) bifunctional enzyme. Tetrahydrofolate is a versatile carrier of activated one-carbon units. The major one-carbon folate donors are N-5 methyltetrahydrofolate, N5,N10-m-THF, and N10-formayltetrahydrofolate. The oxidation of metabolic intermediate m-THF to m-THF requires the enzyme m-THF DH. In addition, most DHs also have an associated cyclohydrolase activity which catalyzes its hydrolysis to N10-formyltetrahydrofolate. m-THF DH is typically found as part of a multifunctional protein in eukaryotes. NADP-dependent m-THF DH in mammals, birds and yeast are components of a trifunctional enzyme with DH, cyclohydrolase, and synthetase activities. Certain eukaryotic cells also contain homodimeric bifunctional DH/cyclodrolase form. In bacteria, monofucntional DH, as well a
Probab=25.56 E-value=1.4e+02 Score=26.68 Aligned_cols=35 Identities=37% Similarity=0.457 Sum_probs=25.7
Q ss_pred cCCCCCEEEEEeCcccchHHHHH-HHHHHHHcCCCEEEEEE
Q 018472 305 GDVKGKVAVMVDDMIDTAGTIAK-GAALLHQEGAREVYACC 344 (355)
Q Consensus 305 gdVkGK~VLIVDDIIdTG~Tl~~-aa~~Lk~~GA~~V~v~~ 344 (355)
++++||+|+||= .|.+... +++.|+++|+ +|+++-
T Consensus 40 ~~l~gk~vlViG----~G~~~G~~~a~~L~~~g~-~V~v~~ 75 (168)
T cd01080 40 IDLAGKKVVVVG----RSNIVGKPLAALLLNRNA-TVTVCH 75 (168)
T ss_pred CCCCCCEEEEEC----CcHHHHHHHHHHHhhCCC-EEEEEE
Confidence 478899999874 4666555 8889999998 455443
No 246
>cd01533 4RHOD_Repeat_2 Member of the Rhodanese Homology Domain superfamily, repeat 2. This CD includes putative rhodanese-related sulfurtransferases which contain 4 copies of the Rhodanese Homology Domain. This CD aligns the 2nd repeat which does contain the putative catalytic Cys residue.
Probab=25.53 E-value=1.2e+02 Score=24.20 Aligned_cols=32 Identities=22% Similarity=0.084 Sum_probs=24.9
Q ss_pred CCCEEEEEeCcccchHHHHHHHHHHHHcCCCE-EEE
Q 018472 308 KGKVAVMVDDMIDTAGTIAKGAALLHQEGARE-VYA 342 (355)
Q Consensus 308 kGK~VLIVDDIIdTG~Tl~~aa~~Lk~~GA~~-V~v 342 (355)
+++.++++ |.+|..-..++..|++.|-+. |+.
T Consensus 65 ~~~~ivv~---C~~G~rs~~a~~~L~~~G~~~~v~~ 97 (109)
T cd01533 65 PRTPIVVN---CAGRTRSIIGAQSLINAGLPNPVAA 97 (109)
T ss_pred CCCeEEEE---CCCCchHHHHHHHHHHCCCCcceeE
Confidence 45678887 668887778899999999875 543
No 247
>PRK14476 nitrogenase molybdenum-cofactor biosynthesis protein NifN; Provisional
Probab=25.41 E-value=5.4e+02 Score=26.65 Aligned_cols=133 Identities=17% Similarity=0.166 Sum_probs=67.7
Q ss_pred HHHHHHHHHHhCCCEEEEccC------Cc-hhhhccc----------CCc--ccccc---chHHHHHHHHhhcCCCCCeE
Q 018472 204 AKLVANLITEAGADRVLACDL------HS-GQSMGYF----------DIP--VDHVY---CQPVILDYLASKTVSSNDLV 261 (355)
Q Consensus 204 ak~vA~lL~~~G~d~VitvDl------Hs-~~~~~~F----------~ip--~~~l~---a~~~La~~L~~~~~~~~~~v 261 (355)
.+.+.++|+.+|++-++.-|+ |- .++...| +.+ .-||. ....++++|++++ .-+.
T Consensus 184 ~~elk~lL~~~Gl~v~~lpd~s~~ld~~l~~~~~~~~~gg~t~eei~~~~~A~lniv~~~~~~~~a~~Lee~~---GiP~ 260 (455)
T PRK14476 184 IEELREIIEAFGLEPIILPDLSGSLDGHLPDDWTPTTLGGTTLEEIRELGRSAATIAIGESMRKAAEALEART---GVPY 260 (455)
T ss_pred HHHHHHHHHHcCCceEEecCccccccCCCCCcccccCCCCCCHHHHHhhccCcEEEEecHHHHHHHHHHHHHh---CCCe
Confidence 688999999999988765443 21 1111000 000 01111 1235677777664 2233
Q ss_pred EEecCCCh----hHHHHHHHHHcCCCCEE-EEEEeecCCCeeEEE-eeecCCCCCEEEEEeCcccchHHHHHHHHHHHHc
Q 018472 262 VVSPDVGG----VARARAFAKKLSDAPLA-IVDKRRHGHNVAEVM-NLIGDVKGKVAVMVDDMIDTAGTIAKGAALLHQE 335 (355)
Q Consensus 262 VVspd~Gg----v~rA~~lA~~L~~~p~~-~v~K~R~~~~~~e~~-~l~gdVkGK~VLIVDDIIdTG~Tl~~aa~~Lk~~ 335 (355)
+..+..-| -.|.+.+++.++ .+.. .+.++|.. ..+.+ ...-.+.||+|.|+= .+......++.|.+.
T Consensus 261 ~~~~~p~G~~~t~~~l~~l~~~~g-~~~~~~i~~er~~--~~~~~~d~~~~l~gkrvai~~----~~~~~~~la~~L~el 333 (455)
T PRK14476 261 LVFPSLTGLEAVDRFIATLAQISG-RPVPAKYRRQRAQ--LQDAMLDGHFYFGGKRVAIAA----EPDLLLALGSFLAEM 333 (455)
T ss_pred EecCCCcChHHHHHHHHHHHHHHC-CCCcHHHHHHHHH--HHHHHHHHHHHhcCCEEEEEe----CHHHHHHHHHHHHHC
Confidence 33322223 355566666665 3321 11111100 00000 111135799988763 345667777999999
Q ss_pred CCCEEEEEEEc
Q 018472 336 GAREVYACCTH 346 (355)
Q Consensus 336 GA~~V~v~~tH 346 (355)
|..-+.+++++
T Consensus 334 G~~v~~~~~~~ 344 (455)
T PRK14476 334 GAEIVAAVTTT 344 (455)
T ss_pred CCEEEEEEeCC
Confidence 99888877765
No 248
>TIGR01754 flav_RNR ribonucleotide reductase-associated flavodoxin, putative. This model represents a family of proteins found immediately downstream of ribonucleotide reductase genes in Xyella fastidiosa and some Gram-positive bacteria. It appears to be a highly divergent flavodoxin of the short chain type, more like the flavodoxins of the sulfate-reducing genus Desulfovibrio than like the NifF flavodoxins associated with nitrogen fixation.
Probab=25.39 E-value=2.7e+02 Score=23.43 Aligned_cols=44 Identities=9% Similarity=0.149 Sum_probs=24.7
Q ss_pred CHHHHHHHHHHhCCceecee-eeecCCCceEEEeccCcCCCcEEEEcc
Q 018472 107 NPALSQEIACYMGVELGKIN-IKRFADGEIYVQLQESVRGCDVYLVQP 153 (355)
Q Consensus 107 ~~~LA~~Ia~~Lg~~l~~~~-~~~FpDGE~~v~i~~~VrG~dV~iiqs 153 (355)
...+|+.|++.|+..-..++ +..-++.+ ....++...|++++.+
T Consensus 14 Te~iA~~ia~~l~~~g~~v~~~~~~~~~~---~~~~~~~~~d~iilgs 58 (140)
T TIGR01754 14 TEEVAFMIQDYLQKDGHEVDILHRIGTLA---DAPLDPENYDLVFLGT 58 (140)
T ss_pred HHHHHHHHHHHHhhCCeeEEecccccccc---cCcCChhhCCEEEEEc
Confidence 46899999999976544443 22223210 1122344567777766
No 249
>PRK06388 amidophosphoribosyltransferase; Provisional
Probab=24.92 E-value=5.4e+02 Score=27.03 Aligned_cols=74 Identities=22% Similarity=0.284 Sum_probs=47.0
Q ss_pred CHHHHHHHHHHhCCceeceeee------ec--CCCc-----eEEEec---cCcCCCcEEEEccCCCCchhHHHHHHHHHH
Q 018472 107 NPALSQEIACYMGVELGKINIK------RF--ADGE-----IYVQLQ---ESVRGCDVYLVQPTCPPANENLMELLIMID 170 (355)
Q Consensus 107 ~~~LA~~Ia~~Lg~~l~~~~~~------~F--pDGE-----~~v~i~---~~VrG~dV~iiqs~~~p~nd~lmELll~id 170 (355)
....|..+|+.+|+++...-++ +| +..+ ..+++. +.+.|++|+||...... -..| --+++
T Consensus 302 ~~~~A~g~a~~~gip~~~~L~r~r~~~r~fi~~~q~~R~~~~~~kl~~~~~~i~gk~VlLVDDsitt--GtTl--~~~~~ 377 (474)
T PRK06388 302 GRSQAIGFSMASGIPYTEGLIKNRYSERTFIMPTQSDRKAAIKLKLNPIREVISGKRIVLVDDSIVR--GNTM--RFIVK 377 (474)
T ss_pred cHHHHHHHHHHhCCCchhheEEecccCCcccCCchhhhhhceeEEeccccccccCceEEEEeCeECc--HHHH--HHHHH
Confidence 3467999999999998542222 11 1212 333322 34678999998654321 2233 36788
Q ss_pred HHHhcCCCeEEEEe
Q 018472 171 ACRRASAKNITAVI 184 (355)
Q Consensus 171 alr~~~a~~ItlVi 184 (355)
+||++||+.|.+.+
T Consensus 378 ~L~~aGak~V~~ri 391 (474)
T PRK06388 378 IMRKYGAKEVHVRI 391 (474)
T ss_pred HHHHcCCCEEEEEe
Confidence 89999999999876
No 250
>TIGR01752 flav_long flavodoxin, long chain. Flavodoxins are small redox-active proteins with a flavin mononucleotide (FMN) prosthetic group. They can act in nitrogen fixation by nitrogenase, in sulfite reduction, and light-dependent NADP+ reduction in during photosynthesis, among other roles. This model describes the long chain type, typical for nitrogen fixation but associated with pyruvate formate-lyase activation and cobalamin-dependent methionine synthase activity in E. coli.
Probab=24.84 E-value=4.7e+02 Score=22.81 Aligned_cols=99 Identities=14% Similarity=0.225 Sum_probs=50.6
Q ss_pred CHHHHHHHHHHhCCceeceeeeecCCCceEEEeccCcCCCcEEEEcc-CC--CCchhHHHHHHHHHHHHHhc--CCCeEE
Q 018472 107 NPALSQEIACYMGVELGKINIKRFADGEIYVQLQESVRGCDVYLVQP-TC--PPANENLMELLIMIDACRRA--SAKNIT 181 (355)
Q Consensus 107 ~~~LA~~Ia~~Lg~~l~~~~~~~FpDGE~~v~i~~~VrG~dV~iiqs-~~--~p~nd~lmELll~idalr~~--~a~~It 181 (355)
...+|+.|++.|+. ..+++....+-. ..++.+.|++|+.+ +. ....++..++ ++.+... .-+++.
T Consensus 13 Te~vA~~Ia~~l~~--~~~~i~~~~~~~-----~~~l~~~d~ii~gspty~~g~~p~~~~~f---l~~l~~~~l~gk~v~ 82 (167)
T TIGR01752 13 TEGIAEKIQKELGE--DDVDVFNIAKAS-----KEDLNAYDKLILGTPTWGVGELQEDWEDF---LPTLEELDFTGKTVA 82 (167)
T ss_pred HHHHHHHHHHHhCC--CceEEEEcccCC-----HhHHhhCCEEEEEecCCCCCcCcHHHHHH---HHHhhcCCCCCCEEE
Confidence 45889999999974 223333333321 12455677777766 22 1112334333 3333332 234443
Q ss_pred EEeeCc---cccccccccCCCCcchHHHHHHHHHHhCCCEEEEcc
Q 018472 182 AVIPYF---GYARADRKTQGRESIAAKLVANLITEAGADRVLACD 223 (355)
Q Consensus 182 lViPY~---~YaRqDr~~~~ge~isak~vA~lL~~~G~d~VitvD 223 (355)
++-.- +|+. .-.-..+.+.++|+..|+..|-.+.
T Consensus 83 -~fg~g~~~~y~~-------~f~~a~~~l~~~l~~~G~~~ig~~~ 119 (167)
T TIGR01752 83 -LFGLGDQEGYSE-------TFCDGMGILYDKIKARGAKVVGFWP 119 (167)
T ss_pred -EEecCCCCcccH-------HHHHHHHHHHHHHHHcCCeEEceec
Confidence 33211 2211 0123467788899988988777654
No 251
>PRK08202 purine nucleoside phosphorylase; Provisional
Probab=24.57 E-value=2.9e+02 Score=26.56 Aligned_cols=80 Identities=19% Similarity=0.239 Sum_probs=49.4
Q ss_pred CCCEEEEECCCCHHHHHHHHHHhCCceeceeeeecCC-------CceEEEeccCcCCCcEEEEccCC----CCchhHHHH
Q 018472 96 NNRIKLFSGTANPALSQEIACYMGVELGKINIKRFAD-------GEIYVQLQESVRGCDVYLVQPTC----PPANENLME 164 (355)
Q Consensus 96 ~~~~~ifsg~~~~~LA~~Ia~~Lg~~l~~~~~~~FpD-------GE~~v~i~~~VrG~dV~iiqs~~----~p~nd~lmE 164 (355)
+.++-|+.||.=-.|++.+....-++++ ++-.||. |+++. ..+.|++|+++|+-. ..++..+
T Consensus 21 ~~~i~iI~GsGl~~~~~~~~~~~~~~y~--~ip~f~~~~v~gh~~~~~~---G~l~g~~Vv~~~g~~H~yeG~~~~~~-- 93 (272)
T PRK08202 21 KPEIGLILGSGLGALADEIENAVVIPYA--DIPGFPVSTVEGHAGELVL---GRLGGKPVLAMQGRFHYYEGYSMEAV-- 93 (272)
T ss_pred CCCEEEEeCCchhHHHHHhcCcEEEecc--cCCCCCCCCCcCCCceEEE---EEECCEEEEEEccCCcccCCCCHHHH--
Confidence 4678999999877777655333112222 1234553 55554 345689999999754 2244433
Q ss_pred HHHHHHHHHhcCCCeEEEE
Q 018472 165 LLIMIDACRRASAKNITAV 183 (355)
Q Consensus 165 Lll~idalr~~~a~~ItlV 183 (355)
-..+.++++.|++.|...
T Consensus 94 -~a~i~~l~~lGv~~II~t 111 (272)
T PRK08202 94 -TFPVRVMKALGVETLIVT 111 (272)
T ss_pred -HHHHHHHHHcCCCEEEEe
Confidence 455778888899887653
No 252
>PRK04663 murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase; Provisional
Probab=24.53 E-value=5.3e+02 Score=26.14 Aligned_cols=146 Identities=10% Similarity=0.111 Sum_probs=76.5
Q ss_pred HHHHHHHHHHhCCceecee--eeecCCCceEEEeccCcCCCcEEEEccCCCCchhHHHHHHHHHHHHHhcCCCeEEEEee
Q 018472 108 PALSQEIACYMGVELGKIN--IKRFADGEIYVQLQESVRGCDVYLVQPTCPPANENLMELLIMIDACRRASAKNITAVIP 185 (355)
Q Consensus 108 ~~LA~~Ia~~Lg~~l~~~~--~~~FpDGE~~v~i~~~VrG~dV~iiqs~~~p~nd~lmELll~idalr~~~a~~ItlViP 185 (355)
-..|-.+|..+|++...+. +..|.--+-+.++-... +.+.+|... .+ .|.-.++-.++++. ..+++++|+-
T Consensus 274 alaAia~a~~lGi~~~~i~~~L~~f~g~~~R~e~v~~~--~g~~~idDs-~~--tn~~s~~~Al~~~~--~~~~~i~IlG 346 (438)
T PRK04663 274 VLVVLALLDAAGVDYRKALDALKSYTGLTHRCQVVADN--HGIKWVNDS-KA--TNVASTLAALSGLE--IEGKLYLLVG 346 (438)
T ss_pred HHHHHHHHHHcCCCHHHHHHHHHhCCCCCCceEEeeee--CCcEEEeCC-Cc--CCHHHHHHHHHhcc--cCCcEEEEEC
Confidence 3567778888999876655 56777666566554332 356555442 33 23433333333332 1246778877
Q ss_pred CccccccccccCCCCcchHHHHHHHHHHhCCCEEEEccCCchhhhcccCCccccccchHHHHHHHHhhcCCCCCeEEEec
Q 018472 186 YFGYARADRKTQGRESIAAKLVANLITEAGADRVLACDLHSGQSMGYFDIPVDHVYCQPVILDYLASKTVSSNDLVVVSP 265 (355)
Q Consensus 186 Y~~YaRqDr~~~~ge~isak~vA~lL~~~G~d~VitvDlHs~~~~~~F~ip~~~l~a~~~La~~L~~~~~~~~~~vVVsp 265 (355)
-+ ++ +..+ ..+++.+.... +.|+.+..+..++...... .......+...+++.+.. ...+.|+++|
T Consensus 347 g~-----~~----~~~~--~~l~~~~~~~~-~~vi~~G~~~~~~~~~~~~-~~~~~~~e~av~~~~~~~-~~gd~VLlsp 412 (438)
T PRK04663 347 GV-----GK----GADF--SPLKPVLATLN-LQLCCFGEDGDQFMPLHPS-ARRFDTMEDAIESISPQL-KSGDMVMLSP 412 (438)
T ss_pred Cc-----cC----CCCH--HHHHHHHHhhC-cEEEEECCCHHHHHHHhcc-CeecCCHHHHHHHHHHhC-CCCCEEEECc
Confidence 32 11 1222 35666666554 5888888776554322110 111112344445554322 2456788888
Q ss_pred CCChhHHHH
Q 018472 266 DVGGVARAR 274 (355)
Q Consensus 266 d~Ggv~rA~ 274 (355)
...++...+
T Consensus 413 ~~as~d~f~ 421 (438)
T PRK04663 413 ACASFDQFK 421 (438)
T ss_pred ccccccCcC
Confidence 755544333
No 253
>TIGR03127 RuMP_HxlB 6-phospho 3-hexuloisomerase. Members of this protein family are 6-phospho 3-hexuloisomerase (PHI), or the PHI domain of a fusion protein. This enzyme is part of the ribulose monophosphate (RuMP) pathway, which in one direction removes the toxic metabolite formaldehyde by assimilation into fructose-6-phosphate. In the other direction, in species lacking a complete pentose phosphate pathway, the RuMP pathway yields ribulose-5-phosphate, necessary for nucleotide biosynthesis, at the cost of also yielding formaldehyde. These latter species tend usually have a formaldehyde-activating enzyme to attach formaldehyde to the C1 carrier tetrahydromethanopterin.
Probab=24.43 E-value=4.8e+02 Score=22.75 Aligned_cols=75 Identities=15% Similarity=0.177 Sum_probs=46.0
Q ss_pred CCCEEEEECCCCHHHHHHHHHHhCCceeceeeeecCCCceEEEeccCcCCCcEEEEccCCCCchhHHHHHHHHHHHHHhc
Q 018472 96 NNRIKLFSGTANPALSQEIACYMGVELGKINIKRFADGEIYVQLQESVRGCDVYLVQPTCPPANENLMELLIMIDACRRA 175 (355)
Q Consensus 96 ~~~~~ifsg~~~~~LA~~Ia~~Lg~~l~~~~~~~FpDGE~~v~i~~~VrG~dV~iiqs~~~p~nd~lmELll~idalr~~ 175 (355)
.+++.+++...+..+|+.++.+|.. ++. ...-..|.. ...+..+|++|+=|.+.. +. |++-++..+|+.
T Consensus 30 a~~I~i~G~G~S~~~A~~~~~~l~~-~g~-~~~~~~~~~-----~~~~~~~Dv~I~iS~sG~-t~---~~i~~~~~ak~~ 98 (179)
T TIGR03127 30 AKRIFVAGAGRSGLVGKAFAMRLMH-LGF-NVYVVGETT-----TPSIKKGDLLIAISGSGE-TE---SLVTVAKKAKEI 98 (179)
T ss_pred CCEEEEEecCHHHHHHHHHHHHHHh-CCC-eEEEeCCcc-----cCCCCCCCEEEEEeCCCC-cH---HHHHHHHHHHHC
Confidence 4568888766677888888888732 221 122222321 235556799998887543 34 445566778999
Q ss_pred CCCeEE
Q 018472 176 SAKNIT 181 (355)
Q Consensus 176 ~a~~It 181 (355)
|++-|.
T Consensus 99 g~~ii~ 104 (179)
T TIGR03127 99 GATVAA 104 (179)
T ss_pred CCeEEE
Confidence 986554
No 254
>PF07931 CPT: Chloramphenicol phosphotransferase-like protein; InterPro: IPR012853 The members of this family are all similar to chloramphenicol 3-O phosphotransferase (CPT, Q56148 from SWISSPROT) expressed by Streptomyces venezuelae. Chloramphenicol (Cm) is a metabolite produced by this bacterium that can inhibit ribosomal peptidyl transferase activity and therefore protein production. By transferring a phosphate group to the C-3 hydroxyl group of Cm, CPT inactivates this potentially lethal metabolite [, ]. ; GO: 0005524 ATP binding, 0016740 transferase activity; PDB: 1QHX_A 1QHN_A 1GRR_A 1QHY_A 1QHS_A 1GRQ_A.
Probab=24.41 E-value=68 Score=28.98 Aligned_cols=24 Identities=29% Similarity=0.331 Sum_probs=15.6
Q ss_pred CCEEEEEeCcccchHHHHHHH-HHHH
Q 018472 309 GKVAVMVDDMIDTAGTIAKGA-ALLH 333 (355)
Q Consensus 309 GK~VLIVDDIIdTG~Tl~~aa-~~Lk 333 (355)
|-+ |||||++..+.-+.... +.|.
T Consensus 83 G~~-VIvD~v~~~~~~l~d~l~~~L~ 107 (174)
T PF07931_consen 83 GNN-VIVDDVFLGPRWLQDCLRRLLA 107 (174)
T ss_dssp T-E-EEEEE--TTTHHHHHHHHHHHT
T ss_pred CCC-EEEecCccCcHHHHHHHHHHhC
Confidence 434 78999999998877776 5553
No 255
>TIGR02981 phageshock_pspE phage shock operon rhodanese PspE. Members of this very narrowly defined protein family are proteins active as rhodanese (EC 2.8.1.1) and found in the extended variants of the phage shock protein (psp operon) in Escherichia coli and a few closely related species. Note that the designation phage shock protein PspE has been applied, incorrectly, in many instances where the genome lacks the phage shock regulon entirely.
Probab=23.94 E-value=1.6e+02 Score=23.88 Aligned_cols=31 Identities=6% Similarity=0.054 Sum_probs=25.9
Q ss_pred CCEEEEEeCcccchHHHHHHHHHHHHcCCCEEEE
Q 018472 309 GKVAVMVDDMIDTAGTIAKGAALLHQEGAREVYA 342 (355)
Q Consensus 309 GK~VLIVDDIIdTG~Tl~~aa~~Lk~~GA~~V~v 342 (355)
++.++++ |.+|.....++..|++.|-..|+.
T Consensus 58 ~~~vvly---C~~G~rS~~aa~~L~~~G~~~v~~ 88 (101)
T TIGR02981 58 NDTVKLY---CNAGRQSGMAKDILLDMGYTHAEN 88 (101)
T ss_pred CCeEEEE---eCCCHHHHHHHHHHHHcCCCeEEe
Confidence 4567776 678999999999999999998875
No 256
>PRK11921 metallo-beta-lactamase/flavodoxin domain-containing protein; Provisional
Probab=23.89 E-value=3.9e+02 Score=26.90 Aligned_cols=121 Identities=15% Similarity=0.227 Sum_probs=65.2
Q ss_pred hhhhhhcccCCCCEEEEECCC---CHHHHHHHHHHhCC--ceeceeeeecCCCceEEEeccCcCCCcEEEEccCCCCchh
Q 018472 86 RMEKTVNRTTNNRIKLFSGTA---NPALSQEIACYMGV--ELGKINIKRFADGEIYVQLQESVRGCDVYLVQPTCPPANE 160 (355)
Q Consensus 86 ~~~~~~~~~~~~~~~ifsg~~---~~~LA~~Ia~~Lg~--~l~~~~~~~FpDGE~~v~i~~~VrG~dV~iiqs~~~p~nd 160 (355)
+..-..++ .++++.|+.+|. ...+|+.||+-+.. .=.++++...++-... .+..++...|.+|+.+-+. |.
T Consensus 238 Y~~~~~~~-~~~kv~IvY~S~~GnTe~mA~~ia~g~~~~~~g~~v~~~~~~~~~~~-~i~~~~~~~d~ii~GspT~--~~ 313 (394)
T PRK11921 238 YLEWAANY-QENQVTILYDTMWNSTRRMAEAIAEGIKKANKDVTVKLYNSAKSDKN-DIITEVFKSKAILVGSSTI--NR 313 (394)
T ss_pred HHHHhhcC-CcCcEEEEEECCchHHHHHHHHHHHHHhhcCCCCeEEEEECCCCCHH-HHHHHHHhCCEEEEECCCc--Cc
Confidence 34344433 366788887765 45999999998862 1124444444331100 1112233578888876432 22
Q ss_pred HHHH-HHHHHHHHHhcC-CCeEEEEeeCccccccccccCCCCcchHHHHHHHHHHhCCCEEE
Q 018472 161 NLME-LLIMIDACRRAS-AKNITAVIPYFGYARADRKTQGRESIAAKLVANLITEAGADRVL 220 (355)
Q Consensus 161 ~lmE-Lll~idalr~~~-a~~ItlViPY~~YaRqDr~~~~ge~isak~vA~lL~~~G~d~Vi 220 (355)
..+. +.-+.+.++... ..++.++.--++|+ |+ ..+.+.+.|+..|++.+-
T Consensus 314 ~~~~~~~~~l~~l~~~~~~~K~~a~FGsygw~--------g~--a~~~~~~~l~~~g~~~v~ 365 (394)
T PRK11921 314 GILSSTAAILEEIKGLGFKNKKAAAFGSYGWS--------GE--SVKIITERLKKAGFEIVN 365 (394)
T ss_pred cccHHHHHHHHHhhccCcCCCEEEEEecCCCc--------cH--HHHHHHHHHHHCCCEEcc
Confidence 2222 333334444433 23565666655662 44 357788999988876653
No 257
>PRK04194 hypothetical protein; Provisional
Probab=23.84 E-value=8.1e+02 Score=25.19 Aligned_cols=124 Identities=22% Similarity=0.334 Sum_probs=69.2
Q ss_pred HHHHhCCCEEEEccCCchh--h---hcccCCccccccchHHHHHHHHhhc-CCCC-CeEEEecCCChhHHHHHHHHHcCC
Q 018472 210 LITEAGADRVLACDLHSGQ--S---MGYFDIPVDHVYCQPVILDYLASKT-VSSN-DLVVVSPDVGGVARARAFAKKLSD 282 (355)
Q Consensus 210 lL~~~G~d~VitvDlHs~~--~---~~~F~ip~~~l~a~~~La~~L~~~~-~~~~-~~vVVspd~Ggv~rA~~lA~~L~~ 282 (355)
.|...|+|+|+.-+++.+. + .|.+++| .|..++-++... ...+ +-=++.| .|....+.+++.++.
T Consensus 137 ~l~~L~~~~i~~sp~~~G~G~V~~aHG~lPVP------aPAt~eil~~~~~~~~~~~~EL~TP--TGAAil~~l~~~f~~ 208 (392)
T PRK04194 137 ALDYLGVDKVYCSPLPLGGGFVKTAHGILPVP------APATLELLKGIPVYGGDVEGELTTP--TGAAILAALADEFGP 208 (392)
T ss_pred HHHHcCCCeEEEcCCccCCeEEEeccCCCCCC------HHHHHHHHcCCCccCCCCCccccCh--HHHHHHHHHHhhcCC
Confidence 3677899999999988643 2 2666665 465555443211 0111 0112222 344556677776643
Q ss_pred CCEEEEEEeecC--------CCeeEEEe--eecCCCCCEEEE----EeCcccchHHHHHHHHHHHHcCCCEEEEE
Q 018472 283 APLAIVDKRRHG--------HNVAEVMN--LIGDVKGKVAVM----VDDMIDTAGTIAKGAALLHQEGAREVYAC 343 (355)
Q Consensus 283 ~p~~~v~K~R~~--------~~~~e~~~--l~gdVkGK~VLI----VDDIIdTG~Tl~~aa~~Lk~~GA~~V~v~ 343 (355)
.|-..+.+.-.+ .|....+- ..+.....+|++ |||+ ||.-+-.+.+.|.+.||..|+..
T Consensus 209 ~p~~~~~~iGyGaG~rd~~~pNvLR~~l~~~~~~~~~d~v~vlEtniDD~--t~E~lg~~~e~L~~~GAlDV~~t 281 (392)
T PRK04194 209 PPSMTIEKVGYGAGTRDLPIPNVLRLVLGEAEEGPEREEVVVLETNIDDL--SPEVLGYLFERLLEAGALDVFIT 281 (392)
T ss_pred CCCeeEEEEEEecCCCCCCCCcEEEEEecccCCCCCCceEEEEEecCcCC--CHHHHHHHHHHHHHCCCceeeec
Confidence 344444333222 23222221 111222234444 5887 79999999999999999998854
No 258
>COG2236 Predicted phosphoribosyltransferases [General function prediction only]
Probab=23.70 E-value=4e+02 Score=24.58 Aligned_cols=62 Identities=16% Similarity=0.278 Sum_probs=47.5
Q ss_pred CCCCEEEEECCCCHHHHHHHHHHhCC-ceeceeeeecCC-----CceEEEec--cC-cCCCcEEEEccCCC
Q 018472 95 TNNRIKLFSGTANPALSQEIACYMGV-ELGKINIKRFAD-----GEIYVQLQ--ES-VRGCDVYLVQPTCP 156 (355)
Q Consensus 95 ~~~~~~ifsg~~~~~LA~~Ia~~Lg~-~l~~~~~~~FpD-----GE~~v~i~--~~-VrG~dV~iiqs~~~ 156 (355)
.+..++|--+...--.|.-||..||+ ++..+.+..+.+ ||..++-+ -+ ++|++|.||.....
T Consensus 28 ~~PDvIiaiaRGG~~pariLsd~L~~~~l~~i~v~~y~~~~~~~~~~~v~~~~~~d~l~GkkVLIVDDI~D 98 (192)
T COG2236 28 FKPDVIVAIARGGLIPARILSDFLGVKPLYSIKVEHYDETAERDGEAKVKYPITIDPLSGKKVLIVDDIVD 98 (192)
T ss_pred CCCCEEEEEcCCceehHHHHHHHhCCCceEEEEEEEehhhcccCCcceeecCccccccCCCeEEEEecccC
Confidence 45667777778888999999999999 788888888865 34444443 23 78999999988754
No 259
>cd01965 Nitrogenase_MoFe_beta_like Nitrogenase_MoFe_beta_like: Nitrogenase MoFe protein, beta subunit_like. The nitrogenase enzyme catalyzes the ATP-dependent reduction of dinitrogen (N2) to ammonia. This group contains the beta subunits of component 1 of the three known genetically distinct types of nitrogenase systems: a molybdenum-dependent nitrogenase (Mo-nitrogenase), a vanadium-dependent nitrogenase (V-nitrogenase), and an iron-only nitrogenase (Fe-nitrogenase). These nitrogenase systems consist of component 1 (MoFe protein, VFe protein or, FeFe protein respectively) and, component 2 (Fe protein). The most widespread and best characterized of these systems is the Mo-nitrogenase. MoFe is an alpha2beta2 tetramer, the alternative nitrogenases are alpha2beta2delta2 hexamers having alpha and beta subunits similar to the alpha and beta subunits of MoFe. For MoFe, each alphabeta pair contains one P-cluster (at the alphabeta interface) and, one molecule of iron molybdenum cofactor (Fe
Probab=23.49 E-value=76 Score=32.36 Aligned_cols=38 Identities=18% Similarity=0.163 Sum_probs=28.6
Q ss_pred CCCCCEEEEEeCcccchHHHHHHHHHHHHcCCCEEEEEEEcc
Q 018472 306 DVKGKVAVMVDDMIDTAGTIAKGAALLHQEGAREVYACCTHA 347 (355)
Q Consensus 306 dVkGK~VLIVDDIIdTG~Tl~~aa~~Lk~~GA~~V~v~~tHg 347 (355)
.++||+|.|+= .+......++.|.+.|..-+.+++.+.
T Consensus 296 ~l~gk~v~i~~----~~~~~~~l~~~L~e~G~~v~~v~~~~~ 333 (428)
T cd01965 296 YLGGKRVAIAG----DPDLLLGLSRFLLEMGAEPVAAVTGTD 333 (428)
T ss_pred HhcCCEEEEEc----ChHHHHHHHHHHHHcCCcceEEEEcCC
Confidence 46899998772 344566788999999999887777543
No 260
>PRK00258 aroE shikimate 5-dehydrogenase; Reviewed
Probab=23.47 E-value=1.6e+02 Score=28.12 Aligned_cols=36 Identities=22% Similarity=0.280 Sum_probs=29.5
Q ss_pred CCCCCEEEEEeCcccchHHHHHHHHHHHHcCCCEEEEEEE
Q 018472 306 DVKGKVAVMVDDMIDTAGTIAKGAALLHQEGAREVYACCT 345 (355)
Q Consensus 306 dVkGK~VLIVDDIIdTG~Tl~~aa~~Lk~~GA~~V~v~~t 345 (355)
+++||+|+|+ -+|++-..++..|.+.|+.+|+++.-
T Consensus 120 ~~~~k~vlVl----GaGg~a~ai~~aL~~~g~~~V~v~~R 155 (278)
T PRK00258 120 DLKGKRILIL----GAGGAARAVILPLLDLGVAEITIVNR 155 (278)
T ss_pred CCCCCEEEEE----cCcHHHHHHHHHHHHcCCCEEEEEeC
Confidence 5778888877 36999999999999999888887753
No 261
>PRK05627 bifunctional riboflavin kinase/FMN adenylyltransferase; Reviewed
Probab=23.24 E-value=3.9e+02 Score=26.28 Aligned_cols=79 Identities=25% Similarity=0.285 Sum_probs=49.2
Q ss_pred cchHHHHHHHHHHhCCCEEEEccCCchhhhcccCCccccccchHHHHHHHHhhcCCCCCeEEEecCC-------ChhHHH
Q 018472 201 SIAAKLVANLITEAGADRVLACDLHSGQSMGYFDIPVDHVYCQPVILDYLASKTVSSNDLVVVSPDV-------GGVARA 273 (355)
Q Consensus 201 ~isak~vA~lL~~~G~d~VitvDlHs~~~~~~F~ip~~~l~a~~~La~~L~~~~~~~~~~vVVspd~-------Ggv~rA 273 (355)
-.+...=..+|+..|+|.++.++ |+....++++...+-+.|.+.+ .-..+|||-|- |.+..-
T Consensus 69 l~t~eeR~~~l~~~gVD~~~~~~---------F~~~~~~ls~e~Fi~~~l~~~l--~~~~iVvG~Df~FG~~~~G~~~~L 137 (305)
T PRK05627 69 LTPLRDKAELLAELGVDYVLVLP---------FDEEFAKLSAEEFIEDLLVKGL--NAKHVVVGFDFRFGKKRAGDFELL 137 (305)
T ss_pred CCCHHHHHHHHHHcCCCEEEEec---------CCHHHhcCCHHHHHHHHHHhcc--CCCEEEECCCCCCCCCCCCCHHHH
Confidence 34567778889999999999866 3322334444444444454432 23458888876 466777
Q ss_pred HHHHHHcCCCCEEEEEEe
Q 018472 274 RAFAKKLSDAPLAIVDKR 291 (355)
Q Consensus 274 ~~lA~~L~~~p~~~v~K~ 291 (355)
+.+++..+ ..+.++...
T Consensus 138 ~~~~~~~g-~~v~~v~~~ 154 (305)
T PRK05627 138 KEAGKEFG-FEVTIVPEV 154 (305)
T ss_pred HHHHHHcC-cEEEEeccE
Confidence 77777776 666665543
No 262
>cd06409 PB1_MUG70 The MUG70 protein is a product of the meiotically up-regulated gene 70 which has a role in meiosis and harbors a PB1 domain. The PB1 domain is a modular domain mediating specific protein-protein interactions which play a role in many critical cell processes such as osteoclastogenesis, angiogenesis, early cardiovascular development, and cell polarity. A canonical PB1-PB1 interaction, which involves heterodimerization of two PB1 domains, is required for the formation of macromolecular signaling complexes ensuring specificity and fidelity during cellular signaling. The interaction between two PB1 domains depends on the type of PB1. There are three types of PB1 domains: type I which contains an OPCA motif, acidic amino acid cluster, type II which contains a basic cluster, and type I/II which contains both an OPCA motif and a basic cluster. Interactions of PB1 domains with other protein domains have been described as noncanonical PB1-interactions. The PB1 domain module is
Probab=22.77 E-value=4.1e+02 Score=21.39 Aligned_cols=64 Identities=16% Similarity=0.196 Sum_probs=40.6
Q ss_pred CCCHHHHHHHHHHhCCceeceeeeecCCCceEEEeccCcCCCcEEEEccCCCCchhHHHHHHHHHHHHHhcCCCeEEEEe
Q 018472 105 TANPALSQEIACYMGVELGKINIKRFADGEIYVQLQESVRGCDVYLVQPTCPPANENLMELLIMIDACRRASAKNITAVI 184 (355)
Q Consensus 105 ~~~~~LA~~Ia~~Lg~~l~~~~~~~FpDGE~~v~i~~~VrG~dV~iiqs~~~p~nd~lmELll~idalr~~~a~~ItlVi 184 (355)
.+=.+|-++|+++||.+.. +++-..+...++ .| |.+++.+ +.+|.|- ++-+|.+|-++|.+.+
T Consensus 21 ~~~~~L~~~I~~Rl~~d~~-------~~~~~~L~YlDD-Eg-D~VllT~-----D~DL~e~---v~iar~~g~~~v~L~v 83 (86)
T cd06409 21 ESLEELRTLISQRLGDDDF-------ETHLYALSYVDD-EG-DIVLITS-----DSDLVAA---VLVARSAGLKKLDLHL 83 (86)
T ss_pred CCHHHHHHHHHHHhCCccc-------cCCcccEEEEcC-CC-CEEEEec-----cchHHHH---HHHHHHcCCCEEEEEE
Confidence 3446999999999998643 244445555433 24 4444432 4557664 4558888999988876
Q ss_pred e
Q 018472 185 P 185 (355)
Q Consensus 185 P 185 (355)
-
T Consensus 84 ~ 84 (86)
T cd06409 84 H 84 (86)
T ss_pred e
Confidence 4
No 263
>PF10087 DUF2325: Uncharacterized protein conserved in bacteria (DUF2325); InterPro: IPR016772 There is currently no experimental data for members of this group or their homologues, nor do they exhibit features indicative of any function.
Probab=22.66 E-value=3.9e+02 Score=21.14 Aligned_cols=72 Identities=15% Similarity=0.163 Sum_probs=46.0
Q ss_pred EEEEEC-CCCHHHHHHHHHHhCCceeceeeeecCCCceEEE--eccCcCCCcEEEEccCCCCchhHHHHHHHHHHHHHhc
Q 018472 99 IKLFSG-TANPALSQEIACYMGVELGKINIKRFADGEIYVQ--LQESVRGCDVYLVQPTCPPANENLMELLIMIDACRRA 175 (355)
Q Consensus 99 ~~ifsg-~~~~~LA~~Ia~~Lg~~l~~~~~~~FpDGE~~v~--i~~~VrG~dV~iiqs~~~p~nd~lmELll~idalr~~ 175 (355)
+.|+.| .....--+++.+..|.++... .=.+|...-. ++..+...|++|+.+-+ ++.+.| ..+.+.||+.
T Consensus 2 vliVGG~~~~~~~~~~~~~~~G~~~~~h---g~~~~~~~~~~~l~~~i~~aD~VIv~t~~--vsH~~~--~~vk~~akk~ 74 (97)
T PF10087_consen 2 VLIVGGREDRERRYKRILEKYGGKLIHH---GRDGGDEKKASRLPSKIKKADLVIVFTDY--VSHNAM--WKVKKAAKKY 74 (97)
T ss_pred EEEEcCCcccHHHHHHHHHHcCCEEEEE---ecCCCCccchhHHHHhcCCCCEEEEEeCC--cChHHH--HHHHHHHHHc
Confidence 567777 355566667777788765433 1144443443 78888888999887643 455666 4566778876
Q ss_pred CC
Q 018472 176 SA 177 (355)
Q Consensus 176 ~a 177 (355)
+.
T Consensus 75 ~i 76 (97)
T PF10087_consen 75 GI 76 (97)
T ss_pred CC
Confidence 65
No 264
>cd01715 ETF_alpha The electron transfer flavoprotein (ETF) serves as a specific electron acceptor for various mitochondrial dehydrogenases. ETF transfers electrons to the main respiratory chain via ETF-ubiquinone oxidoreductase. ETF is an heterodimer that consists of an alpha and a beta subunit which binds one molecule of FAD per dimer . A similar system also exists in some bacteria. The homologous pair of proteins (FixA/FixB) are essential for nitrogen fixation. The alpha subunit of ETF is structurally related to the bacterial nitrogen fixation protein fixB which could play a role in a redox process and feed electrons to ferredoxin.
Probab=22.58 E-value=2.5e+02 Score=24.50 Aligned_cols=66 Identities=18% Similarity=0.184 Sum_probs=41.7
Q ss_pred HHHHHhCCCEEEEccCCchhhhcccCCccccccchHHHHHHHHhhcCCCCCeEEEecCCChhHHHHHHHHHcCCCCE
Q 018472 209 NLITEAGADRVLACDLHSGQSMGYFDIPVDHVYCQPVILDYLASKTVSSNDLVVVSPDVGGVARARAFAKKLSDAPL 285 (355)
Q Consensus 209 ~lL~~~G~d~VitvDlHs~~~~~~F~ip~~~l~a~~~La~~L~~~~~~~~~~vVVspd~Ggv~rA~~lA~~L~~~p~ 285 (355)
+-+..+|+|+|+.++-. .... |+ .......|++.+++. ..+.++++-..-|-.++-.+|.+|+ .++
T Consensus 45 ~~~~~~Gad~v~~~~~~--~~~~-~~----~~~~a~al~~~i~~~---~p~~Vl~~~t~~g~~la~rlAa~L~-~~~ 110 (168)
T cd01715 45 AALKAYGADKVLVAEDP--ALAH-YL----AEPYAPALVALAKKE---KPSHILAGATSFGKDLAPRVAAKLD-VGL 110 (168)
T ss_pred HHHHhcCCCEEEEecCh--hhcc-cC----hHHHHHHHHHHHHhc---CCCEEEECCCccccchHHHHHHHhC-CCc
Confidence 33446899999998621 1111 22 111245566666542 2466777777888899999999997 554
No 265
>PRK02122 glucosamine-6-phosphate deaminase-like protein; Validated
Probab=22.56 E-value=1.1e+02 Score=33.37 Aligned_cols=38 Identities=26% Similarity=0.309 Sum_probs=31.0
Q ss_pred CCCCEEEEE-----eCcccchHHHHHHHHHHHHcCCCEEEEEEEccc
Q 018472 307 VKGKVAVMV-----DDMIDTAGTIAKGAALLHQEGAREVYACCTHAV 348 (355)
Q Consensus 307 VkGK~VLIV-----DDIIdTG~Tl~~aa~~Lk~~GA~~V~v~~tHgl 348 (355)
...++||+| ||+|.-||||.+ |.++|..-..++.|-|-
T Consensus 367 ~~~~rvLv~spHPDDevi~~GGTlar----l~~~G~~V~vv~~TsG~ 409 (652)
T PRK02122 367 PYPKRVIIFSPHPDDDVISMGGTFRR----LVEQGHDVHVAYQTSGN 409 (652)
T ss_pred cCCceEEEEEeCCCchHhhhHHHHHH----HHHCCCcEEEEEecCCc
Confidence 446788888 889999999965 56789998888888875
No 266
>PRK13940 glutamyl-tRNA reductase; Provisional
Probab=22.37 E-value=1.4e+02 Score=30.76 Aligned_cols=37 Identities=5% Similarity=0.076 Sum_probs=31.4
Q ss_pred ecCCCCCEEEEEeCcccchHHHHHHHHHHHHcCCCEEEEEE
Q 018472 304 IGDVKGKVAVMVDDMIDTAGTIAKGAALLHQEGAREVYACC 344 (355)
Q Consensus 304 ~gdVkGK~VLIVDDIIdTG~Tl~~aa~~Lk~~GA~~V~v~~ 344 (355)
.+++.||+|+|| -+|+.-..+++.|.+.|+.+|+++.
T Consensus 176 ~~~l~~kkvlvi----GaG~~a~~va~~L~~~g~~~I~V~n 212 (414)
T PRK13940 176 LDNISSKNVLII----GAGQTGELLFRHVTALAPKQIMLAN 212 (414)
T ss_pred hcCccCCEEEEE----cCcHHHHHHHHHHHHcCCCEEEEEC
Confidence 357889998865 5799999999999999999988764
No 267
>cd01534 4RHOD_Repeat_3 Member of the Rhodanese Homology Domain superfamily, repeat 3. This CD includes putative rhodanese-related sulfurtransferases which contain 4 copies of the Rhodanese Homology Domain. This CD aligns the 3rd repeat which does not contain the putative catalytic Cys residue.
Probab=22.27 E-value=1.5e+02 Score=22.96 Aligned_cols=31 Identities=32% Similarity=0.395 Sum_probs=24.2
Q ss_pred CCCEEEEEeCcccchHHHHHHHHHHHHcCCCEEEE
Q 018472 308 KGKVAVMVDDMIDTAGTIAKGAALLHQEGAREVYA 342 (355)
Q Consensus 308 kGK~VLIVDDIIdTG~Tl~~aa~~Lk~~GA~~V~v 342 (355)
+++.+++++ .+|.....++..|+..|-. |+.
T Consensus 55 ~~~~iv~~c---~~G~rs~~aa~~L~~~G~~-v~~ 85 (95)
T cd01534 55 RGARIVLAD---DDGVRADMTASWLAQMGWE-VYV 85 (95)
T ss_pred CCCeEEEEC---CCCChHHHHHHHHHHcCCE-EEE
Confidence 467788875 4788888889999999987 643
No 268
>cd01526 RHOD_ThiF Member of the Rhodanese Homology Domain superfamily. This CD includes several putative molybdopterin synthase sulfurylases including the molybdenum cofactor biosynthetic protein (CnxF) of Aspergillus nidulans and the molybdenum cofactor synthesis protein 3 (MOCS3) of Homo sapiens. These rhodanese-like domains are found C-terminal of the ThiF and MoeZ_MoeB domains.
Probab=22.26 E-value=1.1e+02 Score=25.18 Aligned_cols=33 Identities=18% Similarity=0.081 Sum_probs=26.1
Q ss_pred CCCEEEEEeCcccchHHHHHHHHHHHHcCC-CEEEEE
Q 018472 308 KGKVAVMVDDMIDTAGTIAKGAALLHQEGA-REVYAC 343 (355)
Q Consensus 308 kGK~VLIVDDIIdTG~Tl~~aa~~Lk~~GA-~~V~v~ 343 (355)
+++.++++. .+|.....+++.|++.|- ..|+.+
T Consensus 71 ~~~~ivv~C---~~G~rs~~aa~~L~~~G~~~~v~~l 104 (122)
T cd01526 71 KDSPIYVVC---RRGNDSQTAVRKLKELGLERFVRDI 104 (122)
T ss_pred CCCcEEEEC---CCCCcHHHHHHHHHHcCCccceeee
Confidence 467888874 588888889999999999 667654
No 269
>PRK07308 flavodoxin; Validated
Probab=22.13 E-value=4.8e+02 Score=21.96 Aligned_cols=108 Identities=8% Similarity=0.056 Sum_probs=50.1
Q ss_pred EEEEECCC---CHHHHHHHHHHhCCceeceeeeecCCCceEEEeccCcCCCcEEEEccCCC---CchhHHHHHHHHHHHH
Q 018472 99 IKLFSGTA---NPALSQEIACYMGVELGKINIKRFADGEIYVQLQESVRGCDVYLVQPTCP---PANENLMELLIMIDAC 172 (355)
Q Consensus 99 ~~ifsg~~---~~~LA~~Ia~~Lg~~l~~~~~~~FpDGE~~v~i~~~VrG~dV~iiqs~~~---p~nd~lmELll~idal 172 (355)
+.|+.+|. +..+|+.|++.|...=..+++....|-+. +++...|.+|+.+.+. ...+++.++ ++.+
T Consensus 4 ~~IvY~S~tGnTe~iA~~ia~~l~~~g~~~~~~~~~~~~~-----~~l~~~d~vi~g~~t~g~G~~p~~~~~f---l~~l 75 (146)
T PRK07308 4 AKIVYASMTGNTEEIADIVADKLRELGHDVDVDECTTVDA-----SDFEDADIAIVATYTYGDGELPDEIVDF---YEDL 75 (146)
T ss_pred EEEEEECCCchHHHHHHHHHHHHHhCCCceEEEecccCCH-----hHhccCCEEEEEeCccCCCCCCHHHHHH---HHHH
Confidence 44444433 45889999998842211233332222211 1344456666654321 122344443 4444
Q ss_pred HhcCCC-eEEEEeeCccccccccccCCCCcchHHHHHHHHHHhCCCEEE
Q 018472 173 RRASAK-NITAVIPYFGYARADRKTQGRESIAAKLVANLITEAGADRVL 220 (355)
Q Consensus 173 r~~~a~-~ItlViPY~~YaRqDr~~~~ge~isak~vA~lL~~~G~d~Vi 220 (355)
++...+ +..+|+-+- |+.+ +.-.-.++.+.+.|...|+..+.
T Consensus 76 ~~~~l~~k~~~vfG~G-----d~~y-~~~~~a~~~~~~~l~~~g~~~~~ 118 (146)
T PRK07308 76 ADLDLSGKIYGVVGSG-----DTFY-DYFCKSVDDFEAQFALTGATKGA 118 (146)
T ss_pred hcCCCCCCEEEEEeeC-----CCCH-HHHHHHHHHHHHHHHHcCCeEcc
Confidence 544322 223343331 1111 11123467778888888876544
No 270
>cd01449 TST_Repeat_2 Thiosulfate sulfurtransferase (TST), C-terminal, catalytic domain. TST contains 2 copies of the Rhodanese Homology Domain; this is the second repeat. Only the second repeat contains the catalytically active Cys residue.
Probab=22.07 E-value=1.5e+02 Score=23.67 Aligned_cols=33 Identities=15% Similarity=0.009 Sum_probs=26.7
Q ss_pred CCCEEEEEeCcccchHHHHHHHHHHHHcCCCEEEEE
Q 018472 308 KGKVAVMVDDMIDTAGTIAKGAALLHQEGAREVYAC 343 (355)
Q Consensus 308 kGK~VLIVDDIIdTG~Tl~~aa~~Lk~~GA~~V~v~ 343 (355)
+++.||+++ .+|.....++..|+..|-..|+.+
T Consensus 77 ~~~~iv~yc---~~g~~s~~~~~~l~~~G~~~v~~l 109 (118)
T cd01449 77 PDKPVIVYC---GSGVTACVLLLALELLGYKNVRLY 109 (118)
T ss_pred CCCCEEEEC---CcHHHHHHHHHHHHHcCCCCeeee
Confidence 578899996 468788888999999998877654
No 271
>cd01714 ETF_beta The electron transfer flavoprotein (ETF) serves as a specific electron acceptor for various mitochondrial dehydrogenases. ETF transfers electrons to the main respiratory chain via ETF-ubiquinone oxidoreductase. ETF is an heterodimer that consists of an alpha and a beta subunit which binds one molecule of FAD per dimer . A similar system also exists in some bacteria. The homologous pair of proteins (FixA/FixB) are essential for nitrogen fixation. The beta subunit protein is distantly related to and forms a heterodimer with the alpha subunit.
Probab=22.06 E-value=3.5e+02 Score=24.69 Aligned_cols=68 Identities=15% Similarity=0.097 Sum_probs=39.4
Q ss_pred HHHHHHHhCCCEEEEccCCchhhhcccCCccccccchHHHHHHHHhhcCCCCCeEEEecCC---ChhHHHHHHHHHcCCC
Q 018472 207 VANLITEAGADRVLACDLHSGQSMGYFDIPVDHVYCQPVILDYLASKTVSSNDLVVVSPDV---GGVARARAFAKKLSDA 283 (355)
Q Consensus 207 vA~lL~~~G~d~VitvDlHs~~~~~~F~ip~~~l~a~~~La~~L~~~~~~~~~~vVVspd~---Ggv~rA~~lA~~L~~~ 283 (355)
.++.+...|+|+|+.+|-.. . ..|+ .......+++.+.+. ..+.++++-.. +|-.++..+|.+|+ .
T Consensus 68 ~~~~l~~~G~d~V~~~~~~~--~-~~~~----~e~~a~al~~~i~~~---~p~lVL~~~t~~~~~grdlaprlAarLg-a 136 (202)
T cd01714 68 ALREALAMGADRAILVSDRA--F-AGAD----TLATAKALAAAIKKI---GVDLILTGKQSIDGDTGQVGPLLAELLG-W 136 (202)
T ss_pred HHHHHHHcCCCEEEEEeccc--c-cCCC----hHHHHHHHHHHHHHh---CCCEEEEcCCcccCCcCcHHHHHHHHhC-C
Confidence 33344567999999986421 1 1222 111134556655543 23455555444 48899999999997 6
Q ss_pred CE
Q 018472 284 PL 285 (355)
Q Consensus 284 p~ 285 (355)
++
T Consensus 137 ~l 138 (202)
T cd01714 137 PQ 138 (202)
T ss_pred Cc
Confidence 64
No 272
>COG0196 RibF FAD synthase [Coenzyme metabolism]
Probab=21.94 E-value=7.2e+02 Score=24.59 Aligned_cols=96 Identities=21% Similarity=0.267 Sum_probs=54.0
Q ss_pred EEEeeCccccccccccC----CCCcchHHHHHHHHHHhCCCEEEEccCCchhhhcccCCccccccchHHHHHHHHhhcCC
Q 018472 181 TAVIPYFGYARADRKTQ----GRESIAAKLVANLITEAGADRVLACDLHSGQSMGYFDIPVDHVYCQPVILDYLASKTVS 256 (355)
Q Consensus 181 tlViPY~~YaRqDr~~~----~ge~isak~vA~lL~~~G~d~VitvDlHs~~~~~~F~ip~~~l~a~~~La~~L~~~~~~ 256 (355)
++|+-+=|+-|. .+. +..-.+.+.=+++|+..|+|.++.++ |+....++.+.+.+- .+.+.+
T Consensus 49 ~~VitF~p~P~~--~~~~~~~~~~Lt~~~~k~~~l~~~gvd~~~v~~---------F~~~fa~ls~~~Fv~-~lv~~l-- 114 (304)
T COG0196 49 VVVITFEPHPRE--LLKPDKPPTRLTPLREKIRLLAGYGVDALVVLD---------FDLEFANLSAEEFVE-LLVEKL-- 114 (304)
T ss_pred eEEEEecCCCHH--HcCCCCCccccCCHHHHHHHHHhcCCcEEEEEe---------CCHhHhhCCHHHHHH-HHHhcc--
Confidence 456655555442 111 22245577778999999999999987 454455666555444 443332
Q ss_pred CCCeEEEecC-------CChhHHHHHHHHHcCCCCEEEEEEee
Q 018472 257 SNDLVVVSPD-------VGGVARARAFAKKLSDAPLAIVDKRR 292 (355)
Q Consensus 257 ~~~~vVVspd-------~Ggv~rA~~lA~~L~~~p~~~v~K~R 292 (355)
.-.-++|+-| .|+...-+.+.+. + ..+..+.+.+
T Consensus 115 ~~k~ivvG~DF~FGk~~~g~~~~L~~~~~~-g-f~v~~v~~~~ 155 (304)
T COG0196 115 NVKHIVVGFDFRFGKGRQGNAELLRELGQK-G-FEVTIVPKIN 155 (304)
T ss_pred CCcEEEEecccccCCCCCCCHHHHHHhccC-C-ceEEEeccEe
Confidence 2234777766 4455554454444 3 4444444433
No 273
>PRK11070 ssDNA exonuclease RecJ; Provisional
Probab=21.94 E-value=3.8e+02 Score=28.89 Aligned_cols=38 Identities=16% Similarity=0.272 Sum_probs=26.6
Q ss_pred CCcEEEEccCCCCchhHHHHHHHHHHHHHhcCCCeEEEEee
Q 018472 145 GCDVYLVQPTCPPANENLMELLIMIDACRRASAKNITAVIP 185 (355)
Q Consensus 145 G~dV~iiqs~~~p~nd~lmELll~idalr~~~a~~ItlViP 185 (355)
++.+.|+..- .-|-+---.+|..++++.|+..+...||
T Consensus 69 ~e~I~I~gDy---D~DGitstail~~~L~~~g~~~~~~~IP 106 (575)
T PRK11070 69 GTRIIVVGDF---DADGATSTALSVLALRSLGCSNVDYLVP 106 (575)
T ss_pred CCEEEEEEec---CccHHHHHHHHHHHHHHcCCCceEEEeC
Confidence 4556655432 2256777788899999999977777777
No 274
>PF02875 Mur_ligase_C: Mur ligase family, glutamate ligase domain This Prosite entry is a subset of the Pfam family.; InterPro: IPR004101 The bacterial cell wall provides strength and rigidity to counteract internal osmotic pressure, and protection against the environment. The peptidoglycan layer gives the cell wall its strength, and helps maintain the overall shape of the cell. The basic peptidoglycan structure of both Gram-positive and Gram-negative bacteria is comprised of a sheet of glycan chains connected by short cross-linking polypeptides. Biosynthesis of peptidoglycan is a multi-step (11-12 steps) process comprising three main stages: (1) formation of UDP-N-acetylmuramic acid (UDPMurNAc) from N-acetylglucosamine (GlcNAc). (2) addition of a short polypeptide chain to the UDPMurNAc. (3) addition of a second GlcNAc to the disaccharide-pentapeptide building block and transport of this unit through the cytoplasmic membrane and incorporation into the growing peptidoglycan layer. Stage two involves four key Mur ligase enzymes: MurC (6.3.2.8 from EC) [], MurD (6.3.2.9 from EC) [], MurE (6.3.2.13 from EC) [] and MurF (6.3.2.10 from EC) []. These four Mur ligases are responsible for the successive additions of L-alanine, D-glutamate, meso-diaminopimelate or L-lysine, and D-alanyl-D-alanine to UDP-N-acetylmuramic acid. All four Mur ligases are topologically similar to one another, even though they display low sequence identity. They are each composed of three domains: an N-terminal Rossmann-fold domain responsible for binding the UDPMurNAc substrate; a central domain (similar to ATP-binding domains of several ATPases and GTPases); and a C-terminal domain (similar to dihydrofolate reductase fold) that appears to be associated with binding the incoming amino acid. The conserved sequence motifs found in the four Mur enzymes also map to other members of the Mur ligase family, including folylpolyglutamate synthetase, cyanophycin synthetase and the capB enzyme from Bacillales []. This entry represents the C-terminal domain from all four stage 2 Mur enzymes: UDP-N-acetylmuramate-L-alanine ligase (MurC), UDP-N-acetylmuramoylalanine-D-glutamate ligase (MurD), UDP-N-acetylmuramoylalanyl-D-glutamate-2,6-diaminopimelate ligase (MurE), and UDP-N-acetylmuramoyl-tripeptide-D-alanyl-D-alanine ligase (MurF). This entry also includes the C-terminal domain of folylpolyglutamate synthase that transfers glutamate to folylpolyglutamate and cyanophycin synthetase that catalyses the biosynthesis of the cyanobacterial reserve material multi-L-arginyl-poly-L-aspartate (cyanophycin) []. The C-terminal domain is almost always associated with the cytoplasmic peptidoglycan synthetases, N-terminal domain (see IPR000713 from INTERPRO).; GO: 0005524 ATP binding, 0016874 ligase activity, 0009058 biosynthetic process; PDB: 2Y68_A 3UAG_A 4UAG_A 2UAG_A 1E0D_A 2XPC_A 2WJP_A 2VTE_A 2Y67_A 1EEH_A ....
Probab=21.79 E-value=1.4e+02 Score=23.07 Aligned_cols=35 Identities=14% Similarity=0.125 Sum_probs=23.6
Q ss_pred EEEEEeCcccchHHHHHHHHHHHHc-CCCEEEEEEE
Q 018472 311 VAVMVDDMIDTAGTIAKGAALLHQE-GAREVYACCT 345 (355)
Q Consensus 311 ~VLIVDDIIdTG~Tl~~aa~~Lk~~-GA~~V~v~~t 345 (355)
.+.|+||...+=..+.++.+.|++. +.+++.++..
T Consensus 13 ~~~vi~D~ahNp~s~~a~l~~l~~~~~~~~~i~V~G 48 (91)
T PF02875_consen 13 GPTVIDDYAHNPDSIRALLEALKELYPKGRIIAVFG 48 (91)
T ss_dssp TEEEEEET--SHHHHHHHHHHHHHHCTTSEEEEEEE
T ss_pred CcEEEEECCCCHHHHHHHHHHHHHhccCCcEEEEEc
Confidence 4566677888888899999999886 5566555443
No 275
>PRK01710 murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase; Provisional
Probab=21.60 E-value=5.5e+02 Score=26.25 Aligned_cols=147 Identities=14% Similarity=0.108 Sum_probs=74.6
Q ss_pred HHHHHHHHHhCCceecee--eeecCCCceEEEeccCcCCCcEEEEccCCCCchhHHHHHHHHHHHHHhcCCCeEEEEeeC
Q 018472 109 ALSQEIACYMGVELGKIN--IKRFADGEIYVQLQESVRGCDVYLVQPTCPPANENLMELLIMIDACRRASAKNITAVIPY 186 (355)
Q Consensus 109 ~LA~~Ia~~Lg~~l~~~~--~~~FpDGE~~v~i~~~VrG~dV~iiqs~~~p~nd~lmELll~idalr~~~a~~ItlViPY 186 (355)
..|-.+|..+ +++..+. +..|.--+-+.++-....| +.+|.... |.|-.+++-.++++. +++++|+.-
T Consensus 289 laA~a~a~~~-i~~~~i~~~L~~f~~~~~R~e~~~~~~g--~~~i~Dsy---~~np~s~~~al~~~~----~~~i~IlGg 358 (458)
T PRK01710 289 LAAFCAVNDD-VSIESMKKVATTFSGVEHRCEFVREING--VKYYNDSI---ASSPTRTLAGLKAFE----KPVILIAGG 358 (458)
T ss_pred HHHHHHHHhC-CCHHHHHHHHHhCCCCCcceEEEEEECC--EEEecccc---cCCHHHHHHHHHhCC----CCEEEEeCC
Confidence 4445555554 6655444 5677665555554333333 43444322 122334444444442 256778662
Q ss_pred ccccccccccCCCCcchHHHHHHHHHHhCCCEEEEccCCchhhhccc---------CCccccccchHHHHHHHHhhcCCC
Q 018472 187 FGYARADRKTQGRESIAAKLVANLITEAGADRVLACDLHSGQSMGYF---------DIPVDHVYCQPVILDYLASKTVSS 257 (355)
Q Consensus 187 ~~YaRqDr~~~~ge~isak~vA~lL~~~G~d~VitvDlHs~~~~~~F---------~ip~~~l~a~~~La~~L~~~~~~~ 257 (355)
.|+ ++ .=..+++.+. .+++.|+.+--+...+..-+ +.+.......+...+++.+.. ..
T Consensus 359 -----~~~----~~--~~~~l~~~~~-~~~~~vi~~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~-~~ 425 (458)
T PRK01710 359 -----YDK----KI--PFEPLAEEGY-EKIKTLILMGATKNKIKEAFEKVISEKGIDIPIVIVNSLEEAVKVAKEIA-EK 425 (458)
T ss_pred -----cCC----CC--CHHHHHHHHH-hhccEEEEECCCHHHHHHHHhhcccccCCCcceEEcCCHHHHHHHHHHhC-CC
Confidence 222 11 1233444444 35899999987765543211 112222223455555565443 34
Q ss_pred CCeEEEecCCChhHHHHHHHH
Q 018472 258 NDLVVVSPDVGGVARARAFAK 278 (355)
Q Consensus 258 ~~~vVVspd~Ggv~rA~~lA~ 278 (355)
.+.|+++|...++..-+.+.+
T Consensus 426 gd~VLlspa~aS~d~f~~~~~ 446 (458)
T PRK01710 426 GDIVTLSPACASFDMFPNFEI 446 (458)
T ss_pred CCEEEeChhhcccccccCHHH
Confidence 578999998877765555543
No 276
>PRK10287 thiosulfate:cyanide sulfurtransferase; Provisional
Probab=21.51 E-value=2e+02 Score=23.55 Aligned_cols=31 Identities=6% Similarity=0.115 Sum_probs=25.6
Q ss_pred CCEEEEEeCcccchHHHHHHHHHHHHcCCCEEEE
Q 018472 309 GKVAVMVDDMIDTAGTIAKGAALLHQEGAREVYA 342 (355)
Q Consensus 309 GK~VLIVDDIIdTG~Tl~~aa~~Lk~~GA~~V~v 342 (355)
++.++++ |++|.....+++.|++.|-..|+.
T Consensus 60 ~~~IVly---C~~G~rS~~aa~~L~~~G~~~v~~ 90 (104)
T PRK10287 60 NDTVKLY---CNAGRQSGQAKEILSEMGYTHAEN 90 (104)
T ss_pred CCeEEEE---eCCChHHHHHHHHHHHcCCCeEEe
Confidence 4677777 558999999999999999988764
No 277
>TIGR02189 GlrX-like_plant Glutaredoxin-like family. This family of glutaredoxin-like proteins is aparrently limited to plants. Multiple isoforms are found in A. thaliana and O.sativa.
Probab=21.42 E-value=1.1e+02 Score=24.65 Aligned_cols=40 Identities=15% Similarity=0.275 Sum_probs=32.0
Q ss_pred CCCCEEEEECCCCH--HHHHHHHHHhCCceeceeeeecCCCc
Q 018472 95 TNNRIKLFSGTANP--ALSQEIACYMGVELGKINIKRFADGE 134 (355)
Q Consensus 95 ~~~~~~ifsg~~~~--~LA~~Ia~~Lg~~l~~~~~~~FpDGE 134 (355)
.++++.||+-+..+ ..|+++-+.+|++...+++..-+++.
T Consensus 6 ~~~~Vvvysk~~Cp~C~~ak~~L~~~~i~~~~vdid~~~~~~ 47 (99)
T TIGR02189 6 SEKAVVIFSRSSCCMCHVVKRLLLTLGVNPAVHEIDKEPAGK 47 (99)
T ss_pred ccCCEEEEECCCCHHHHHHHHHHHHcCCCCEEEEcCCCccHH
Confidence 35779999988877 67777888889998888888777764
No 278
>TIGR01564 S_layer_MJ S-layer protein, MJ0822 family. This model represents one of several families of proteins associated with the formation of prokaryotic S-layers. Members of this family are found in archaeal species, including Pyrococcus horikoshii (split into two tandem reading frames), Methanococcus jannaschii, and related species. Some local similarity can be found to other S-layer protein families.
Probab=21.39 E-value=2.3e+02 Score=30.47 Aligned_cols=58 Identities=19% Similarity=0.212 Sum_probs=45.3
Q ss_pred ccCCCCEEEEECCCCHHHHHHHHHHhCCceeceeeeecCCCceEEEeccCcCCCcEEEEccCCC
Q 018472 93 RTTNNRIKLFSGTANPALSQEIACYMGVELGKINIKRFADGEIYVQLQESVRGCDVYLVQPTCP 156 (355)
Q Consensus 93 ~~~~~~~~ifsg~~~~~LA~~Ia~~Lg~~l~~~~~~~FpDGE~~v~i~~~VrG~dV~iiqs~~~ 156 (355)
.+.+++++++.|+-...|.++|...+++++. .-+.|+ +..+.....|.+|+|+....+
T Consensus 500 ~~~~~nlILVGGPv~N~ltk~l~~~~~i~i~-----n~~p~~-~~~~~~~~ng~~vlvvAG~dr 557 (571)
T TIGR01564 500 DNADKNLILVGGPVANKLTKELADAGKVPKT-----ESSPAT-YAEKCGAANGYDVLVVAGGDR 557 (571)
T ss_pred ccCCCCEEEECCcchhHHHHHHHhcCceecc-----CCCcce-eeeeccccCCceEEEEeCCCh
Confidence 3457899999999988999999999777665 456666 466666777999999987543
No 279
>COG1134 TagH ABC-type polysaccharide/polyol phosphate transport system, ATPase component [Carbohydrate transport and metabolism / Cell envelope biogenesis, outer membrane]
Probab=21.12 E-value=1e+02 Score=29.72 Aligned_cols=38 Identities=11% Similarity=0.179 Sum_probs=29.8
Q ss_pred CEEEEEeCcccchHH--HHHHHHHHHHc-CCCEEEEEEEcc
Q 018472 310 KVAVMVDDMIDTAGT--IAKGAALLHQE-GAREVYACCTHA 347 (355)
Q Consensus 310 K~VLIVDDIIdTG~T--l~~aa~~Lk~~-GA~~V~v~~tHg 347 (355)
-+++|+|-+++.|.. ..+|.+.+.+. -.....++++|-
T Consensus 166 pdILllDEvlavGD~~F~~K~~~rl~e~~~~~~tiv~VSHd 206 (249)
T COG1134 166 PDILLLDEVLAVGDAAFQEKCLERLNELVEKNKTIVLVSHD 206 (249)
T ss_pred CCEEEEehhhhcCCHHHHHHHHHHHHHHHHcCCEEEEEECC
Confidence 489999999999976 56777777665 334788889995
No 280
>PF08410 DUF1737: Domain of unknown function (DUF1737); InterPro: IPR013619 This domain of unknown function is found at the N terminus of bacterial and viral hypothetical proteins.
Probab=20.92 E-value=2.6e+02 Score=20.63 Aligned_cols=34 Identities=15% Similarity=0.291 Sum_probs=26.2
Q ss_pred EEEEECCCCHHHHHHHHHHh--CCceeceeeeecCC
Q 018472 99 IKLFSGTANPALSQEIACYM--GVELGKINIKRFAD 132 (355)
Q Consensus 99 ~~ifsg~~~~~LA~~Ia~~L--g~~l~~~~~~~FpD 132 (355)
..+++|.+..+|+++|.+.| |-+|.---.-.|..
T Consensus 6 Yr~lt~~d~~~fc~rVt~aL~~GW~l~GsP~~t~~~ 41 (54)
T PF08410_consen 6 YRVLTGPDDSAFCHRVTEALNEGWQLYGSPTYTFDG 41 (54)
T ss_pred eEEEECCChHHHHHHHHHHHHcCCEecCCceEEECC
Confidence 67899999999999999998 55565444555554
No 281
>PRK14453 chloramphenicol/florfenicol resistance protein; Provisional
Probab=20.82 E-value=4e+02 Score=26.73 Aligned_cols=16 Identities=13% Similarity=0.372 Sum_probs=9.6
Q ss_pred ccccccceeeeccccc
Q 018472 45 VHVCNAAAVRCDMAEA 60 (355)
Q Consensus 45 ~~~~~~~~~~~~~~~~ 60 (355)
.-+|....+-|.+.=.
T Consensus 100 ~t~CvssqvGC~~~C~ 115 (347)
T PRK14453 100 ESFCISSQCGCGFGCR 115 (347)
T ss_pred eeEEEecCCCcCCCCC
Confidence 4566666666666533
No 282
>PF02225 PA: PA domain; InterPro: IPR003137 The PA (Protease associated) domain is found as an insert domain in diverse proteases, which include the MEROPS peptidase families A22B, M28, and S8A []. The PA domain is also found in a plant vacuolar sorting receptor O22925 from SWISSPROT and members of the RZF family, e.g. O43567 from SWISSPROT.; PDB: 3EIF_A 1XF1_B 3BXM_A 2C6P_A 1Z8L_C 3SJF_A 3BHX_A 2C6G_A 3D7F_A 2XEG_A ....
Probab=20.38 E-value=1.8e+02 Score=22.57 Aligned_cols=35 Identities=23% Similarity=0.318 Sum_probs=25.5
Q ss_pred CCCCCEEEEEeCcccchHHHHHHHHHHHHcCCCEEEEEE
Q 018472 306 DVKGKVAVMVDDMIDTAGTIAKGAALLHQEGAREVYACC 344 (355)
Q Consensus 306 dVkGK~VLIVDDIIdTG~Tl~~aa~~Lk~~GA~~V~v~~ 344 (355)
+++||-||+-..-+ ++..-++..+++||.-|.++-
T Consensus 31 ~~~gkIvlv~rg~~----~~~~k~~~a~~~GA~gvIi~~ 65 (101)
T PF02225_consen 31 DVKGKIVLVERGSC----SFDDKVRNAQKAGAKGVIIYN 65 (101)
T ss_dssp TCTTSEEEEESTSS----CHHHHHHHHHHTTESEEEEE-
T ss_pred cccceEEEEecCCC----CHHHHHHHHHHcCCEEEEEEe
Confidence 68998888733333 567777888899999888776
No 283
>cd04821 PA_M28_1_2 PA_M28_1_2: Protease-associated (PA) domain, peptidase family M28, subfamily-1, subgroup 2. A subgroup of PA-domain containing proteins belonging to the peptidase family M28. Family M28 contains aminopeptidases and carboxypeptidases, and has co-catalytic zinc ions. The PA domain is an insert domain in a diverse fraction of proteases. The significance of the PA domain to many of the proteins in which it is inserted is undetermined. It may be a protein-protein interaction domain. At peptidase active sites, the PA domain may participate in substrate binding and/or promoting conformational changes, which influence the stability and accessibility of the site to substrate. Proteins into which the PA domain is inserted include the following members of the peptidase family M28: i) prostate-specific membrane antigen (PSMA), ii) yeast aminopeptidase Y, and ii) human TfR (transferrin receptor)1 and human TfR2. The proteins listed above belong to other subgroups; relatively litt
Probab=20.23 E-value=2e+02 Score=25.59 Aligned_cols=40 Identities=23% Similarity=0.192 Sum_probs=26.7
Q ss_pred CCCCCEEEEEeCcc---------cch------HHHHHHHHHHHHcCCCEEEEEEE
Q 018472 306 DVKGKVAVMVDDMI---------DTA------GTIAKGAALLHQEGAREVYACCT 345 (355)
Q Consensus 306 dVkGK~VLIVDDII---------dTG------~Tl~~aa~~Lk~~GA~~V~v~~t 345 (355)
||+||-||+..+-- ..| +....=.+.+.++||.-|.++..
T Consensus 47 DVkGKiVvvl~~~P~~~~~~~~~f~~~~~~~~~~~~~K~~~A~~~GA~gvi~v~~ 101 (157)
T cd04821 47 DVKGKTVVILVNDPGFATPDSGLFNGKAMTYYGRWTYKYEEAARQGAAGALIVHE 101 (157)
T ss_pred CcCCcEEEEEcCCCCcccccccccCcccccccccHHHHHHHHHHCCCeEEEEEeC
Confidence 89999999884332 112 13344567788999998877644
No 284
>PRK08373 aspartate kinase; Validated
Probab=20.11 E-value=6.2e+02 Score=25.38 Aligned_cols=29 Identities=21% Similarity=0.187 Sum_probs=24.1
Q ss_pred cccccCCCCcchHHHHHHHHHHhCCCEEE
Q 018472 192 ADRKTQGRESIAAKLVANLITEAGADRVL 220 (355)
Q Consensus 192 qDr~~~~ge~isak~vA~lL~~~G~d~Vi 220 (355)
+|....-||-+++.+++..|...|++...
T Consensus 102 ~D~ils~GE~lSa~lla~~L~~~Gi~a~~ 130 (341)
T PRK08373 102 RDYILSFGERLSAVLFAEALENEGIKGKV 130 (341)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHCCCceEE
Confidence 46655679999999999999999987763
No 285
>PRK09004 FMN-binding protein MioC; Provisional
Probab=20.11 E-value=5.6e+02 Score=21.99 Aligned_cols=106 Identities=15% Similarity=0.114 Sum_probs=53.0
Q ss_pred CEEEEECCC---CHHHHHHHHHHhCCceeceeeeecCCCceEEEeccCcCCCc-EEEEccCC---CCchhHHHHHHHHHH
Q 018472 98 RIKLFSGTA---NPALSQEIACYMGVELGKINIKRFADGEIYVQLQESVRGCD-VYLVQPTC---PPANENLMELLIMID 170 (355)
Q Consensus 98 ~~~ifsg~~---~~~LA~~Ia~~Lg~~l~~~~~~~FpDGE~~v~i~~~VrG~d-V~iiqs~~---~p~nd~lmELll~id 170 (355)
++.|+.||. .+.+|+.|++.+.-.-..+++. ...+ .+++...+ ++++.|++ .++ ++..+++-
T Consensus 3 ~i~I~ygS~tGnae~~A~~l~~~~~~~g~~~~~~--~~~~-----~~~l~~~~~li~~~sT~G~Ge~p-~~~~~f~~--- 71 (146)
T PRK09004 3 DITLISGSTLGGAEYVADHLAEKLEEAGFSTETL--HGPL-----LDDLSASGLWLIVTSTHGAGDLP-DNLQPFFE--- 71 (146)
T ss_pred eEEEEEEcCchHHHHHHHHHHHHHHHcCCceEEe--ccCC-----HHHhccCCeEEEEECCCCCCCCC-hhHHHHHH---
Confidence 467777765 4588988888874221122222 2222 23344444 55677765 222 34444433
Q ss_pred HHHhc----CCCeEEEEeeCccccccccccCCCCcchHHHHHHHHHHhCCCEEEE
Q 018472 171 ACRRA----SAKNITAVIPYFGYARADRKTQGRESIAAKLVANLITEAGADRVLA 221 (355)
Q Consensus 171 alr~~----~a~~ItlViPY~~YaRqDr~~~~ge~isak~vA~lL~~~G~d~Vit 221 (355)
.++.. .-+++ +|+- =-|+.. +.=.-.++.+-+.|+..|+.+|..
T Consensus 72 ~L~~~~~~l~g~~~-aVfG-----lGds~Y-~~fc~~~~~ld~~l~~lGa~~v~~ 119 (146)
T PRK09004 72 ELQEQKPDLSQVRF-AAIG-----IGSSEY-DTFCGAIDKLEQLLKAKGAKQIGE 119 (146)
T ss_pred HHHhcCCCCCCCEE-EEEe-----ecCCCH-HHHhHHHHHHHHHHHHcCCeEeec
Confidence 33332 11122 1211 111211 111234788899999999999875
Done!