BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 018473
(355 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|1U6F|A Chain A, Nmr Solution Structure Of Tcubp1, A Single Rbd-Unit From
Trypanosoma Cruzi
Length = 139
Score = 32.0 bits (71), Expect = 0.53, Method: Compositional matrix adjust.
Identities = 20/81 (24%), Positives = 39/81 (48%), Gaps = 16/81 (19%)
Query: 185 NFVFTDADIVWLQNPFQRFDPDADFQIACDRFSGNSFNLRNEPNGGFNYVKSNNRTIEFY 244
N++ T D V L+ F+R+ P +I CDR + S G+ +VK +
Sbjct: 48 NYIPTTVDEVQLRQLFERYGPIESVKIVCDRETRQSR--------GYGFVK--------F 91
Query: 245 KFWYNSRKMFPGLHDQDVLNE 265
+ ++++ GL+ ++LN+
Sbjct: 92 QSGSSAQQAIAGLNGFNILNK 112
>pdb|3E0G|A Chain A, Structure Of The Leukemia Inhibitory Factor Receptor
(Lif-R) Domains D1-D5
Length = 483
Score = 29.6 bits (65), Expect = 2.9, Method: Compositional matrix adjust.
Identities = 16/48 (33%), Positives = 25/48 (52%)
Query: 167 EMMWIRIRLLSDVLAMGYNFVFTDADIVWLQNPFQRFDPDADFQIACD 214
E + I+IR +S + G N VFT D ++ F + PD Q+ C+
Sbjct: 244 ENVAIKIRNISVSASSGTNVVFTTEDNIFGTVIFAGYPPDTPQQLNCE 291
>pdb|3EIQ|C Chain C, Crystal Structure Of Pdcd4-eif4a
Length = 358
Score = 28.5 bits (62), Expect = 5.3, Method: Compositional matrix adjust.
Identities = 28/142 (19%), Positives = 59/142 (41%), Gaps = 28/142 (19%)
Query: 76 ILKRAAMGDNTVIITTLNQAWAEPNSIFDIFLESFRTGNGTGKL-LDHLV---------- 124
+ RAA+ D ++ ++++ +S++ G+G G+ ++HLV
Sbjct: 178 VQARAAL-DKATVLLSMSKGGKRKDSVW---------GSGGGQQPVNHLVKEIDMLLKEY 227
Query: 125 VVALDSKALDHCLST-------HPHCYALNTSGLDFSGKEAYFMTSSYLEMMWIRIRLLS 177
+++ D +HCL H Y L+ +G+ A+ M L+ +W +
Sbjct: 228 LLSGDISEAEHCLKELEVPHFHHELVYEAIVMVLESTGESAFKMILDLLKSLWKSSTITI 287
Query: 178 DVLAMGYNFVFTDADIVWLQNP 199
D + GY ++ + + L P
Sbjct: 288 DQMKRGYERIYNEIPDINLDVP 309
>pdb|2X42|A Chain A, Structure Of Beta-Glucosidase 3b From Thermotoga
Neapolitana In Complex With Alpha-D-Glucose
Length = 721
Score = 28.1 bits (61), Expect = 7.1, Method: Compositional matrix adjust.
Identities = 22/67 (32%), Positives = 31/67 (46%), Gaps = 6/67 (8%)
Query: 57 VIAPSMKAQKSSNDPSLEKILKRA--AMGDNTVIITTLNQAWAEPNSIFDIF----LESF 110
V APS K + SN P LEK K A A + V++ NS +F +E+
Sbjct: 305 VNAPSFKNYRYSNKPDLEKHAKVAYEAGAEGVVLLRNEEALPLSENSKIALFGTGQIETI 364
Query: 111 RTGNGTG 117
+ G G+G
Sbjct: 365 KGGTGSG 371
>pdb|2X40|A Chain A, Structure Of Beta-Glucosidase 3b From Thermotoga
Neapolitana In Complex With Glycerol
pdb|2X41|A Chain A, Structure Of Beta-Glucosidase 3b From Thermotoga
Neapolitana In Complex With Glucose
Length = 721
Score = 28.1 bits (61), Expect = 7.5, Method: Compositional matrix adjust.
Identities = 22/67 (32%), Positives = 31/67 (46%), Gaps = 6/67 (8%)
Query: 57 VIAPSMKAQKSSNDPSLEKILKRA--AMGDNTVIITTLNQAWAEPNSIFDIF----LESF 110
V APS K + SN P LEK K A A + V++ NS +F +E+
Sbjct: 305 VNAPSFKNYRYSNKPDLEKHAKVAYEAGAEGVVLLRNEEALPLSENSKIALFGTGQIETI 364
Query: 111 RTGNGTG 117
+ G G+G
Sbjct: 365 KGGTGSG 371
>pdb|1LN8|A Chain A, Crystal Structure Of A New Isoform Of Phospholipase A2
From Naja Naja Sagittifera At 1.6 A Resolution
pdb|1MF4|A Chain A, Structure-Based Design Of Potent And Selective Inhibitors
Of Phospholipase A2: Crystal Structure Of The Complex
Formed Between Phosholipase A2 From Naja Naja
Sagittifera And A Designed Peptide Inhibitor At 1.9 A
Resolution
pdb|3JQ5|A Chain A, Phospholipase A2 Prevents The Aggregation Of Amyloid Beta
Peptides: Crystal Structure Of The Complex Of
Phospholipase A2 With Octapeptide Fragment Of Amyloid
Beta Peptide, Asp- Ala-Glu-Phe-Arg-His-Asp-Ser At 2 A
Resolution
pdb|3JQL|A Chain A, Crystal Structure Of The Complex Formed Between
Phospholipase A2 And A Hexapeptide Fragment Of Amyloid
Beta Peptide, Lys-Leu-Val-Phe-Phe-Ala At 1.2 A
Resolution
pdb|3NJU|A Chain A, Crystal Structure Of The Complex Of Group I Phospholipase
A2 With 4- Methoxy-Benzoicacid At 1.4a Resolution
pdb|3JTI|A Chain A, Crystal Structure Of The Complex Formed Between
Phospholipase A2 With Beta-Amyloid Fragment,
Lys-Gly-Ala-Ile-Ile-Gly-Leu-Met At 1.8 A Resolution
pdb|3OSH|A Chain A, Crystal Structure Of The Complex Of Group 1 Phospholipase
A2 With Atropin At 1.5 A Resolution
pdb|3Q4Y|A Chain A, Crystal Structure Of Group I Phospholipase A2 At 2.3 A
Resolution In 40% Ethanol Revealed The Critical Elements
Of Hydrophobicity Of The Substrate-Binding Site
Length = 119
Score = 27.7 bits (60), Expect = 9.0, Method: Compositional matrix adjust.
Identities = 23/84 (27%), Positives = 33/84 (39%), Gaps = 6/84 (7%)
Query: 133 LDHCLSTHPHCYALNTSGLDFSGKEAYFMTSSYLEMMWIRIRLLSDVLAMGYNFVFTD-- 190
LD C TH +CY + SG YF T SY E + D A + D
Sbjct: 40 LDRCCQTHDNCY---NEAENISGCRPYFKTYSY-ECTQGTLTCKGDNNACAASVCDCDRL 95
Query: 191 ADIVWLQNPFQRFDPDADFQIACD 214
A I + P+ + + D + C+
Sbjct: 96 AAICFAGAPYNDANYNIDLKARCN 119
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.324 0.138 0.432
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 10,213,742
Number of Sequences: 62578
Number of extensions: 401104
Number of successful extensions: 1023
Number of sequences better than 100.0: 10
Number of HSP's better than 100.0 without gapping: 2
Number of HSP's successfully gapped in prelim test: 8
Number of HSP's that attempted gapping in prelim test: 1021
Number of HSP's gapped (non-prelim): 10
length of query: 355
length of database: 14,973,337
effective HSP length: 100
effective length of query: 255
effective length of database: 8,715,537
effective search space: 2222461935
effective search space used: 2222461935
T: 11
A: 40
X1: 15 ( 7.0 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 40 (21.5 bits)
S2: 52 (24.6 bits)