Query 018473
Match_columns 355
No_of_seqs 182 out of 358
Neff 5.9
Searched_HMMs 29240
Date Mon Mar 25 15:49:25 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/018473.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/018473hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 1ll2_A Glycogenin-1; protein-s 97.7 0.0004 1.4E-08 67.3 12.6 160 88-268 7-172 (333)
2 3u2u_A Glycogenin-1, GN-1, GN1 97.1 0.0013 4.3E-08 62.0 8.9 163 85-268 4-173 (263)
3 1g9r_A Glycosyl transferase; a 96.5 0.0048 1.6E-07 58.6 7.1 168 88-268 3-197 (311)
4 3tzt_A Glycosyl transferase fa 96.5 0.013 4.4E-07 54.9 10.0 108 167-284 85-210 (276)
5 2jv8_A Uncharacterized protein 40.2 8.1 0.00028 28.1 0.7 13 333-345 52-64 (73)
6 1fo8_A Alpha-1,3-mannosyl-glyc 36.0 2.6E+02 0.0088 26.6 10.9 111 86-204 5-121 (343)
7 2c0n_A A197; thermophil protei 36.0 29 0.001 31.2 3.8 67 131-213 16-88 (203)
8 2rmf_A Urocortin, HUCN1; CRF l 27.0 38 0.0013 22.6 2.2 18 322-339 6-23 (40)
9 2l27_B Peptide agonist; CRF, E 24.3 46 0.0016 21.9 2.2 17 323-339 5-21 (38)
10 3l9k_W Dynein intermediate cha 20.8 42 0.0014 22.2 1.5 30 158-187 8-37 (38)
No 1
>1ll2_A Glycogenin-1; protein-substrate complex, beta-alpha-beta rossman-like NUCL binding fold, DXD motif, non-proline CIS peptide bond, TRAN; HET: UPG; 1.90A {Oryctolagus cuniculus} SCOP: c.68.1.14 PDB: 1ll3_A 1ll0_A 1zcv_A 1zcu_A 1zdf_A* 1zcy_A 1zdg_A*
Probab=97.65 E-value=0.0004 Score=67.27 Aligned_cols=160 Identities=19% Similarity=0.151 Sum_probs=89.3
Q ss_pred EEEEccccccCCCchHHHHHHHhhhccCCcccCCcEEEEEeC---hHHHHHhhhcCCcEEEecCCCCCCCccccccccHH
Q 018473 88 IITTLNQAWAEPNSIFDIFLESFRTGNGTGKLLDHLVVVALD---SKALDHCLSTHPHCYALNTSGLDFSGKEAYFMTSS 164 (355)
Q Consensus 88 IlT~~N~ay~~p~s~lDlfLes~~~g~~t~~l~~nllVvAlD---~~a~~~c~~~g~~C~~~~~~~~d~s~~~~~~gs~~ 164 (355)
|+.++|.+|. ++ .-..+.|++.. ++ -..++|+..| ++..+.+++.+........-...... ......+.
T Consensus 7 vt~~~d~~Yl-~~--a~vl~~SL~~~-~s---~~~l~vlv~~~is~~~~~~L~~~~~~v~~v~~l~~~~~~-~~~~~~~~ 78 (333)
T 1ll2_A 7 VTLTTNDAYA-KG--ALVLGSSLKQH-RT---SRRLAVLTTPQVSDTMRKALEIVFDEVITVDILDSGDSA-HLTLMKRP 78 (333)
T ss_dssp EEEESSHHHH-HH--HHHHHHHHHHT-TC---CSEEEEEECTTSCHHHHHHHHHHCSEEEECCTTSTTSTT-HHHHHHCG
T ss_pred EEEEeCHHHH-HH--HHHHHHHHHHh-CC---CCCEEEEEcCCCCHHHHHHHHHhCCEEEEEeecCCcchh-hccccccc
Confidence 3344688885 11 11245677652 22 1345555443 56677777777655444321111111 00010111
Q ss_pred HHHHHHHHHHHHHHHHHcCC-cEEEecccEEEccCcccccCCCCCeEeecCCCCCCCCCCCCCCCeeEEEEEeChhHHHH
Q 018473 165 YLEMMWIRIRLLSDVLAMGY-NFVFTDADIVWLQNPFQRFDPDADFQIACDRFSGNSFNLRNEPNGGFNYVKSNNRTIEF 243 (355)
Q Consensus 165 f~~m~w~K~~~l~~vL~lGy-~VLfsDvDVVWlRnP~~~f~~~aDi~is~D~~~g~~~d~~~~~NtGf~yvR~T~~T~~f 243 (355)
+...++.|..+.. + ..| .||+.|+|++.++|+-+.|..+ .+...-|. | .+...|+|++.++++..+-
T Consensus 79 ~~~~t~~Kl~i~~-l--~~ydrvlYLDaD~lv~~di~eLf~~~-~~aAv~d~--~----~~~~fNsGvmlin~~~~~~-- 146 (333)
T 1ll2_A 79 ELGVTLTKLHCWS-L--TQYSKCVFMDADTLVLANIDDLFERE-ELSAAPDP--G----WPDCFNSGVFVYQPSVETY-- 146 (333)
T ss_dssp GGHHHHHHGGGGG-C--TTCSEEEEECTTEEECSCCGGGGGSC-SSEEEECS--S----STTSEEEEEEEECCCHHHH--
T ss_pred chHHHHHHHHHhH-h--cCCCeEEEEeCCEEeccCHHHHhCCC-ceeEEecC--C----CCcceeeeEEEEeCCHHHH--
Confidence 2245677776654 2 344 5999999999999998888554 33333342 1 1357999999999985443
Q ss_pred HHHHHHHHHcC--CCCCchHHHHHHHc
Q 018473 244 YKFWYNSRKMF--PGLHDQDVLNEIKF 268 (355)
Q Consensus 244 ~~~W~~~r~~~--p~~~DQ~vfN~ll~ 268 (355)
+.+.+..... -...||++||.+..
T Consensus 147 -~~l~~~~~~~~~~~~~DQ~~LN~~f~ 172 (333)
T 1ll2_A 147 -NQLLHVASEQGSFDGGDQGLLNTFFN 172 (333)
T ss_dssp -HHHHHHHHHTCCTTSSHHHHHHHHTT
T ss_pred -HHHHHHHHhcCCCCCCCHHHHHHHHH
Confidence 3333322221 23589999999875
No 2
>3u2u_A Glycogenin-1, GN-1, GN1; structural genomics, structural genomics consortium, SGC, transferase, glycosyltransferase, glycogen biosynthesis; HET: GLC UDP; 1.45A {Homo sapiens} SCOP: c.68.1.14 PDB: 3t7n_A* 3t7o_A* 3t7m_A* 3u2v_A* 3u2x_A* 3u2t_A 3rmv_A* 3rmw_A* 3u2w_A* 3qvb_A* 3q4s_A* 1zct_A* 3v8y_A 3v8z_A* 3usr_A 3v90_A 3v91_A* 3usq_A
Probab=97.14 E-value=0.0013 Score=61.95 Aligned_cols=163 Identities=20% Similarity=0.169 Sum_probs=90.5
Q ss_pred CeEEEEE-ccccccCCCchHHHHHHHhhhccCCcccCCcEEEEE---eChHHHHHhhhcCCcEEEecCCCCCCCccc--c
Q 018473 85 NTVIITT-LNQAWAEPNSIFDIFLESFRTGNGTGKLLDHLVVVA---LDSKALDHCLSTHPHCYALNTSGLDFSGKE--A 158 (355)
Q Consensus 85 ~tVIlT~-~N~ay~~p~s~lDlfLes~~~g~~t~~l~~nllVvA---lD~~a~~~c~~~g~~C~~~~~~~~d~s~~~--~ 158 (355)
+...+|. +|.+|. +| .-..+.|++.. ++. . .++|+. ++++..+.+++.|......+. .+..... .
T Consensus 4 ~~AyvTl~td~~Yl-~g--a~vL~~SL~~~-~s~--~-~lvvLvt~~vs~~~~~~L~~~~~~vi~V~~--l~~~~~~~~~ 74 (263)
T 3u2u_A 4 DQAFVTLTTNDAYA-KG--ALVLGSSLKQH-RTT--R-RLVVLATPQVSDSMRKVLETVFDEVIMVDV--LDSGDSAHLT 74 (263)
T ss_dssp TEEEEEEESSHHHH-HH--HHHHHHHHHHT-TCC--S-EEEEEECTTSCHHHHHHHHHHSSEEEECCC--CCCCCHHHHH
T ss_pred ceEEEEEEECHHHH-HH--HHHHHHHHHHh-CCC--C-CEEEEecCCCCHHHHHHHHHcCCeEEEeee--cCCcchhhhh
Confidence 3444444 577785 11 11355677652 221 2 234443 355777888888766554431 1111100 0
Q ss_pred ccccHHHHHHHHHHHHHHHHHHHcCC-cEEEecccEEEccCcccccCCCCCeEeecCCCCCCCCCCCCCCCeeEEEEEeC
Q 018473 159 YFMTSSYLEMMWIRIRLLSDVLAMGY-NFVFTDADIVWLQNPFQRFDPDADFQIACDRFSGNSFNLRNEPNGGFNYVKSN 237 (355)
Q Consensus 159 ~~gs~~f~~m~w~K~~~l~~vL~lGy-~VLfsDvDVVWlRnP~~~f~~~aDi~is~D~~~g~~~d~~~~~NtGf~yvR~T 237 (355)
..+.+.+ ..+|.|..+.. ++ .| .||+.|+|++.++|.-+.|..+ .+....|.. .+..+|+|++.+.++
T Consensus 75 ~~~rp~~-~~~~~kl~~~~-l~--~~~~vlylD~D~~v~~~~~~Lf~~~-~~aA~~d~~------~~~~fNsGv~li~p~ 143 (263)
T 3u2u_A 75 LMKRPEL-GVTLTKLHCWS-LT--QYSKCVFMDADTLVLANIDDLFDRE-ELSAAPDPG------WPDCFNSGVFVYQPS 143 (263)
T ss_dssp HTTCTTG-GGGGGGGGGGG-CT--TCSEEEEECTTEEECSCCGGGGGSC-SSEEEECTT------STTSEEEEEEEECCC
T ss_pred hhcCcch-hHHhHHHHhcc-cc--CcceEEEEcCCEeeccCHHHHhCCC-cceEeccCC------CCccccCeEEEEccc
Confidence 0111111 23455655544 22 46 4999999999999998888654 344444421 135689999999998
Q ss_pred hhHHHHHHHHHHHHHcCCCCCchHHHHHHHc
Q 018473 238 NRTIEFYKFWYNSRKMFPGLHDQDVLNEIKF 268 (355)
Q Consensus 238 ~~T~~f~~~W~~~r~~~p~~~DQ~vfN~ll~ 268 (355)
..+-+=+-+..... ......||+++|.+..
T Consensus 144 ~~~~~~l~~~~~~~-~~~~~~DQd~LN~~f~ 173 (263)
T 3u2u_A 144 VETYNQLLHLASEQ-GSFDGGDQGILNTFFS 173 (263)
T ss_dssp HHHHHHHHHHHHHH-CCTTSSHHHHHHHHTT
T ss_pred HHHHHHHHHHHHhc-CCCCcccHHHHHHHhc
Confidence 64433333332321 2234589999999985
No 3
>1g9r_A Glycosyl transferase; alpha-beta structure; HET: UPF; 2.00A {Neisseria meningitidis} SCOP: c.68.1.4 PDB: 1ga8_A* 1ss9_A*
Probab=96.46 E-value=0.0048 Score=58.59 Aligned_cols=168 Identities=15% Similarity=0.199 Sum_probs=87.0
Q ss_pred EEEEccccccCCCchHHHHHHHh-hhccCCcccCCcEEEEEeC--hHHHHHhhhc----CCcEEEecCCCCCCCc---cc
Q 018473 88 IITTLNQAWAEPNSIFDIFLESF-RTGNGTGKLLDHLVVVALD--SKALDHCLST----HPHCYALNTSGLDFSG---KE 157 (355)
Q Consensus 88 IlT~~N~ay~~p~s~lDlfLes~-~~g~~t~~l~~nllVvAlD--~~a~~~c~~~----g~~C~~~~~~~~d~s~---~~ 157 (355)
|+.++|..|.. -+-..+.|+ +. .+.. --++.|++.| ++..+.+++. +............+.. ..
T Consensus 3 I~~~~d~~Y~~---~~~vli~Sl~l~--~~~~-~~~f~il~~~ls~~~~~~L~~~~~~~~~~i~~~~~~~~~~~~~~~~~ 76 (311)
T 1g9r_A 3 IVFAADDNYAA---YLCVAAKSVEAA--HPDT-EIRFHVLDAGISEANRAAVAANLRGGGGNIRFIDVNPEDFAGFPLNI 76 (311)
T ss_dssp EEEEECGGGHH---HHHHHHHHHHHT--CTTS-CCEEEEEESSCCHHHHHHHHHHSGGGTTTEEEEECCGGGGTTSCCCC
T ss_pred EEEECCHhHHH---HHHHHHHHHHHH--cCCC-CceEEEEECCCCHHHHHHHHHHHHHcCCEEEEEEcCHHHHhcCcccc
Confidence 55667888852 122356677 43 2211 1234455544 5665656554 4333222221111211 01
Q ss_pred cccccHHHHHHHHHHHHHHHHHHHcCC-cEEEecccEEEccCcccccCC---CCCeEeecCCCCC-C-------C-CCCC
Q 018473 158 AYFMTSSYLEMMWIRIRLLSDVLAMGY-NFVFTDADIVWLQNPFQRFDP---DADFQIACDRFSG-N-------S-FNLR 224 (355)
Q Consensus 158 ~~~gs~~f~~m~w~K~~~l~~vL~lGy-~VLfsDvDVVWlRnP~~~f~~---~aDi~is~D~~~g-~-------~-~d~~ 224 (355)
..|-...| .|..+ -.++. .+ .||+.|+|++.++|.-+.+.. +.-+....|.+.. . . ....
T Consensus 77 ~~~s~~~y-----~Rl~l-~~ll~-~~~kvlyLD~D~iv~~di~eL~~~~l~~~~~aav~d~~~~~~~~~~~~~~~~~~~ 149 (311)
T 1g9r_A 77 RHISITTY-----ARLKL-GEYIA-DCDKVLYLDIDVLVRDSLTPLWDTDLGDNWLGASIDLFVERQEGYKQKIGMADGE 149 (311)
T ss_dssp TTCCGGGG-----GGGGH-HHHCC-SCSCEEEECSSEEECSCCHHHHTCCCTTCSEEEEECHHHHTSTTHHHHTTCCTTS
T ss_pred ccCCHHHH-----HHHHH-HHHhh-hcCEEEEEcCCeEeccCHHHHhccCCCCcEEEEEeccchhhhHHHHHhcCCCCCC
Confidence 11211233 34433 34443 44 599999999999998887753 3334444453211 0 0 0123
Q ss_pred CCCCeeEEEEEeCh----hHHHHHHHHHHHHHcCCCCCchHHHHHHHc
Q 018473 225 NEPNGGFNYVKSNN----RTIEFYKFWYNSRKMFPGLHDQDVLNEIKF 268 (355)
Q Consensus 225 ~~~NtGf~yvR~T~----~T~~f~~~W~~~r~~~p~~~DQ~vfN~ll~ 268 (355)
...|+|++.+.++. ...+-+..|.......-...||+++|.+..
T Consensus 150 ~yfNsGv~linl~~~r~~~~~~~~~~~~~~~~~~~~~~DQd~lN~~f~ 197 (311)
T 1g9r_A 150 YYFNAGVLLINLKKWRRHDIFKMSSEWVEQYKDVMQYQDQDILNGLFK 197 (311)
T ss_dssp CCEEEEEEEECHHHHTTSCHHHHHHHHHHHHTTTCSSHHHHHHHHHHT
T ss_pred ceEeeeeeeeeHHHHHhcchHHHHHHHHHhccCcCccCCcCHHHHHHc
Confidence 46899999998763 222333445443222234689999999885
No 4
>3tzt_A Glycosyl transferase family 8; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, putative glycosyl transferase; HET: MSE CIT; 2.10A {Anaerococcus prevotii} SCOP: c.68.1.0
Probab=96.45 E-value=0.013 Score=54.93 Aligned_cols=108 Identities=19% Similarity=0.202 Sum_probs=58.9
Q ss_pred HHHHHHHHHHHHHHHcCC-cEEEecccEEEccCcccccCC---CCCeEeecCCCCCCC---------CCCCCCCCeeEEE
Q 018473 167 EMMWIRIRLLSDVLAMGY-NFVFTDADIVWLQNPFQRFDP---DADFQIACDRFSGNS---------FNLRNEPNGGFNY 233 (355)
Q Consensus 167 ~m~w~K~~~l~~vL~lGy-~VLfsDvDVVWlRnP~~~f~~---~aDi~is~D~~~g~~---------~d~~~~~NtGf~y 233 (355)
..++.|.. +-+++...+ .||+.|+|++.++|.-+.+.. +.-+....|...... .......|+|++.
T Consensus 85 ~~~~~rl~-~~~l~p~~~~kvlylD~D~iv~~di~~L~~~dl~~~~~aav~d~~~~~~~~~~~~~~l~~~~~yfNsGV~l 163 (276)
T 3tzt_A 85 KEMYYRLL-AGEFLPENLGEILYLDPDMLVINPLDDLLRTDISDYILAAASHTGKTDMANNVNRIRLGTDTDYYNSGLLL 163 (276)
T ss_dssp HHHHHHHT-HHHHSCTTCCEEEEECSSEEECSCSHHHHTCCCTTSSEEEEEC--------------------CEEEEEEE
T ss_pred HHHHHHHH-HHHHcccccCeEEEEeCCeeecCCHHHHhhcCCCCCeEEEEEecccchHHHHHHHhcCCCCCCeEEeeEEE
Confidence 34444543 334554445 599999999999999887753 233554455432210 0012579999999
Q ss_pred EEeCh-----hHHHHHHHHHHHHHcCCCCCchHHHHHHHcCCCCCCCceEEEEecc
Q 018473 234 VKSNN-----RTIEFYKFWYNSRKMFPGLHDQDVLNEIKFDPYIQKIQQKLLILDL 284 (355)
Q Consensus 234 vR~T~-----~T~~f~~~W~~~r~~~p~~~DQ~vfN~ll~~~~~~~~gl~v~~Ld~ 284 (355)
+-.+. -+.+++ .|.+.....-...||++||.+... ++..||.
T Consensus 164 inl~~~R~~~~~~~~~-~~~~~~~~~~~~~DQd~LN~~f~~--------~~~~Lp~ 210 (276)
T 3tzt_A 164 INLKRAREEIDPDEIF-SFVEDNHMNLLLPDQDILNAMYGD--------RIYPLDD 210 (276)
T ss_dssp EEHHHHHHHCCHHHHH-HHHHHC--------CHHHHHHHGG--------GEEEEEH
T ss_pred EEHHHHHhhhHHHHHH-HHHHhccccccCCChhHHHHHHhC--------CEEECCc
Confidence 98764 223333 333321111235899999999852 5888986
No 5
>2jv8_A Uncharacterized protein NE1242; solution structure, NESG, structural genomics, unknown function, PSI-2; NMR {Nitrosomonas europaea atcc 19718}
Probab=40.19 E-value=8.1 Score=28.10 Aligned_cols=13 Identities=62% Similarity=0.644 Sum_probs=11.1
Q ss_pred HHHHhhhhhccce
Q 018473 333 RLVLKRAIINDTC 345 (355)
Q Consensus 333 ~~~~~~~~~~~~~ 345 (355)
.|-||||||.||.
T Consensus 52 lldlaraiirdtv 64 (73)
T 2jv8_A 52 LLDLARAIIRDTV 64 (73)
T ss_dssp HHHHHHHHHHHCG
T ss_pred HHHHHHHHHhhce
Confidence 5789999999984
No 6
>1fo8_A Alpha-1,3-mannosyl-glycoprotein beta-1,2-N- acetylglucosaminyltransferase; methylmercury derivative, N- acetylglucosaminyltransferase I; 1.40A {Oryctolagus cuniculus} SCOP: c.68.1.10 PDB: 1fo9_A 1foa_A* 2apc_A* 2am3_A* 2am4_A* 2am5_A*
Probab=35.97 E-value=2.6e+02 Score=26.57 Aligned_cols=111 Identities=10% Similarity=0.066 Sum_probs=66.8
Q ss_pred eEEEEEccccccCCCchHHHHHHHhhhccCCcccCCcEEEEEeCh---HHHHHhhhcCCcEEEecCCCCCC-Cccccccc
Q 018473 86 TVIITTLNQAWAEPNSIFDIFLESFRTGNGTGKLLDHLVVVALDS---KALDHCLSTHPHCYALNTSGLDF-SGKEAYFM 161 (355)
Q Consensus 86 tVIlT~~N~ay~~p~s~lDlfLes~~~g~~t~~l~~nllVvAlD~---~a~~~c~~~g~~C~~~~~~~~d~-s~~~~~~g 161 (355)
.|||.+.|.. . +...|++++.- .....+..+||+-|. ++.+.+++.+.+......+.... ...+...|
T Consensus 5 pViI~~yNRp-----~-l~~~L~sL~~~--~p~~~~~~iivsdDgs~~~~~~vi~~~~~~I~~~~~~d~~~~~~~~~N~g 76 (343)
T 1fo8_A 5 PILVIACDRS-----T-VRRCLDKLLHY--RPSAELFPIIVSQDCGHEETAQVIASYGSAVTHIRQPDLSNIAVQPDHRK 76 (343)
T ss_dssp CEEEEESSCT-----T-HHHHHHHHHHH--CSCTTTSCEEEEECTTCHHHHHHHHTTGGGSEEEECSCCCCCCCCTTCGG
T ss_pred cEEEEECCcH-----H-HHHHHHHHHhc--CCCcCCcEEEEEECCCCHHHHHHHHHcCCceEEEEcCCccccccchhhcC
Confidence 5788888876 2 66788888752 112234567887776 45555555442211111111111 10134455
Q ss_pred cHHHHHHHHHHHHHHHHHHH--cCCcEEEecccEEEccCcccccC
Q 018473 162 TSSYLEMMWIRIRLLSDVLA--MGYNFVFTDADIVWLQNPFQRFD 204 (355)
Q Consensus 162 s~~f~~m~w~K~~~l~~vL~--lGy~VLfsDvDVVWlRnP~~~f~ 204 (355)
.++|.++...-...+..+.+ .+=.+|+.|-|.+.-.|=+.+|.
T Consensus 77 ~~~y~~ia~h~~~al~~vf~~~~~~~vIiLEDDl~~spdF~~y~~ 121 (343)
T 1fo8_A 77 FQGYYKIARHYRWALGQIFHNFNYPAAVVVEDDLEVAPDFFEYFQ 121 (343)
T ss_dssp GHHHHHHHHHHHHHHHHHHTTSCCSEEEEEETTEEECTTHHHHHH
T ss_pred cccchhHhHHHHHHHHHHHHhccCCEEEEEcCCCeECHHHHHHHH
Confidence 56677766665666777766 56679999999999888787774
No 7
>2c0n_A A197; thermophil protein, thermophilic virus, STIV, sulfolobus turreted ICOS virus; 1.86A {Sulfolobus turreted icosahedral virus}
Probab=35.97 E-value=29 Score=31.17 Aligned_cols=67 Identities=18% Similarity=0.236 Sum_probs=44.1
Q ss_pred HHHHHhhhcCCcEEEecCCCCCCCccccccccHHHHHHHHHHHHHHHHHHH-cCCc-EEEecccEEEcc-Ccc---cccC
Q 018473 131 KALDHCLSTHPHCYALNTSGLDFSGKEAYFMTSSYLEMMWIRIRLLSDVLA-MGYN-FVFTDADIVWLQ-NPF---QRFD 204 (355)
Q Consensus 131 ~a~~~c~~~g~~C~~~~~~~~d~s~~~~~~gs~~f~~m~w~K~~~l~~vL~-lGy~-VLfsDvDVVWlR-nP~---~~f~ 204 (355)
.....|.+.|++...... +. -+...|..++.++|+ .||+ ++|.|+|||=+. ||- ..+.
T Consensus 16 ~l~~~l~~~gi~~~l~~~-----~S-----------lI~raRN~lv~~Fl~~~~~dhllfIDAD~~~I~FdPe~V~rLl~ 79 (203)
T 2c0n_A 16 PLIDFLVKNDIEYVILSR-----RN-----------HVAVQREIALDMFLEMKDYDTLAFLDEDVVPIEIDFQKVEAKFN 79 (203)
T ss_dssp HHHHHHHHTTCCEEEECC-----CS-----------CHHHHHHHHHHHHHHCTTCCEEEEECTTEEEEECCHHHHHHHHH
T ss_pred HHHHHHHhCCCeEEEEcc-----cc-----------chHHHHHHHHHHHHhcCCCCEEEEEeCCCCccccCHHHHHHHHh
Confidence 345667778888776543 11 134568888999887 6987 889999976444 331 1224
Q ss_pred CCCCeEeec
Q 018473 205 PDADFQIAC 213 (355)
Q Consensus 205 ~~aDi~is~ 213 (355)
.++|+++.+
T Consensus 80 ~g~DVV~Gs 88 (203)
T 2c0n_A 80 EGYDVVCGY 88 (203)
T ss_dssp HTCSEEEEE
T ss_pred CCCCEEEEE
Confidence 588998754
No 8
>2rmf_A Urocortin, HUCN1; CRF ligand, sauvagine, astressin2B, urocortins, urotensins, CRF receptors, amidation, cleavage on PAIR of basic residues, hormone; NMR {Synthetic} SCOP: j.16.1.1
Probab=26.98 E-value=38 Score=22.59 Aligned_cols=18 Identities=44% Similarity=0.434 Sum_probs=14.9
Q ss_pred chHHHHHHHHHHHHHhhh
Q 018473 322 SRLTVFRLLRRRLVLKRA 339 (355)
Q Consensus 322 ~~~~~~~~~~~~~~~~~~ 339 (355)
|---+|.+||.|+-+|||
T Consensus 6 SiDLTFHlLR~miemar~ 23 (40)
T 2rmf_A 6 SIDLTFHLLRTLLELART 23 (40)
T ss_dssp HHHHHHHHHHHHHHHHHH
T ss_pred chhhHHHHHHHHHHHHHH
Confidence 334589999999999987
No 9
>2l27_B Peptide agonist; CRF, ECD1, family B1, alpha helical CRF, membrane P peptide binding protein; NMR {Homo sapiens}
Probab=24.28 E-value=46 Score=21.94 Aligned_cols=17 Identities=35% Similarity=0.403 Sum_probs=14.5
Q ss_pred hHHHHHHHHHHHHHhhh
Q 018473 323 RLTVFRLLRRRLVLKRA 339 (355)
Q Consensus 323 ~~~~~~~~~~~~~~~~~ 339 (355)
---+|.++|.|+-+|||
T Consensus 5 lDLTFhlLR~m~emar~ 21 (38)
T 2l27_B 5 LDLTFNLLREVLEIAKA 21 (38)
T ss_dssp SHHHHHHHHHHHHHHHH
T ss_pred hhHHHHHHHHHHHHHHH
Confidence 34589999999999987
No 10
>3l9k_W Dynein intermediate chain, cytosolic; LC7, light chain 7, KM23, RO hydrolase, alternative splicing, lysosome, membrane; 3.00A {Drosophila melanogaster}
Probab=20.82 E-value=42 Score=22.23 Aligned_cols=30 Identities=7% Similarity=0.177 Sum_probs=26.1
Q ss_pred cccccHHHHHHHHHHHHHHHHHHHcCCcEE
Q 018473 158 AYFMTSSYLEMMWIRIRLLSDVLAMGYNFV 187 (355)
Q Consensus 158 ~~~gs~~f~~m~w~K~~~l~~vL~lGy~VL 187 (355)
....|.+|....-+..+++.+.|.-.|+++
T Consensus 8 ~I~~S~~F~~F~~rsskviERAL~e~yDi~ 37 (38)
T 3l9k_W 8 MIILSENFQRFVVRAGRVIERALSENVDIY 37 (38)
T ss_dssp HHHTSHHHHHHHHHHHHHHHHHHHHSSCTT
T ss_pred HHhcCHHHHHHHHHHHHHHHHHHccccccc
Confidence 456789999999999999999999888864
Done!