BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 018474
(355 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|2FP8|A Chain A, Structure Of Strictosidine Synthase, The Biosynthetic
Entry To The Monoterpenoid Indole Alkaloid Family
pdb|2FP8|B Chain B, Structure Of Strictosidine Synthase, The Biosynthetic
Entry To The Monoterpenoid Indole Alkaloid Family
pdb|2FP9|A Chain A, Crystal Structure Of Native Strictosidine Synthase
pdb|2FP9|B Chain B, Crystal Structure Of Native Strictosidine Synthase
pdb|2FPC|A Chain A, Structure Of Strictosidine Synthase, The Biosynthetic
Entry To The Monoterpenoid Indole Alkaloid Family
pdb|2FPC|B Chain B, Structure Of Strictosidine Synthase, The Biosynthetic
Entry To The Monoterpenoid Indole Alkaloid Family
pdb|2VAQ|A Chain A, Structure Of Strictosidine Synthase In Complex With
Inhibitor
pdb|2VAQ|B Chain B, Structure Of Strictosidine Synthase In Complex With
Inhibitor
pdb|3V1S|A Chain A, Scaffold Tailoring By A Newly Detected Pictet-Spenglerase
Ac-Tivity Of Strictosidine Synthase (Str1): From The
Common Tryp-Toline Skeleton To The Rare
Piperazino-Indole Framework
pdb|3V1S|B Chain B, Scaffold Tailoring By A Newly Detected Pictet-Spenglerase
Ac-Tivity Of Strictosidine Synthase (Str1): From The
Common Tryp-Toline Skeleton To The Rare
Piperazino-Indole Framework
Length = 322
Score = 67.0 bits (162), Expect = 1e-11, Method: Compositional matrix adjust.
Identities = 38/109 (34%), Positives = 56/109 (51%), Gaps = 2/109 (1%)
Query: 143 GTLYFTVASTKYTPTDFYKDMAEGKPYGQLRKYDPKLKETTVLHEGFYFANGIALSKNED 202
G +YFT ST Y + M G+L KYDP KETT+L + + G +S +
Sbjct: 138 GIVYFTDVSTLYDDRGVQQIMDTSDKTGRLIKYDPSTKETTLLLKELHVPGGAEVSADSS 197
Query: 203 FVVVCESWKFRCRRYWLKGDRAGILDAFIENLPGGPDNINLAPDGSFWI 251
FV+V E + +YWL+G + G + ++ +P P NI DG FW+
Sbjct: 198 FVLVAEFLSHQIVKYWLEGPKKGTAEVLVK-IP-NPGNIKRNADGHFWV 244
>pdb|2V91|A Chain A, Structure Of Strictosidine Synthase In Complex With
Strictosidine
pdb|2V91|B Chain B, Structure Of Strictosidine Synthase In Complex With
Strictosidine
Length = 302
Score = 66.6 bits (161), Expect = 2e-11, Method: Compositional matrix adjust.
Identities = 38/109 (34%), Positives = 56/109 (51%), Gaps = 2/109 (1%)
Query: 143 GTLYFTVASTKYTPTDFYKDMAEGKPYGQLRKYDPKLKETTVLHEGFYFANGIALSKNED 202
G +YFT ST Y + M G+L KYDP KETT+L + + G +S +
Sbjct: 129 GIVYFTDVSTLYDDRGVQQIMDTSDKTGRLIKYDPSTKETTLLLKELHVPGGAEVSADSS 188
Query: 203 FVVVCESWKFRCRRYWLKGDRAGILDAFIENLPGGPDNINLAPDGSFWI 251
FV+V E + +YWL+G + G + ++ +P P NI DG FW+
Sbjct: 189 FVLVAEFLSHQIVKYWLEGPKKGTAEVLVK-IP-NPGNIKRNADGHFWV 235
>pdb|2FPB|A Chain A, Structure Of Strictosidine Synthase, The Biosynthetic
Entry To The Monoterpenoid Indole Alkaloid Family
pdb|2FPB|B Chain B, Structure Of Strictosidine Synthase, The Biosynthetic
Entry To The Monoterpenoid Indole Alkaloid Family
Length = 322
Score = 65.9 bits (159), Expect = 3e-11, Method: Compositional matrix adjust.
Identities = 37/109 (33%), Positives = 55/109 (50%), Gaps = 2/109 (1%)
Query: 143 GTLYFTVASTKYTPTDFYKDMAEGKPYGQLRKYDPKLKETTVLHEGFYFANGIALSKNED 202
G +YFT ST Y + G+L KYDP KETT+L + + G +S +
Sbjct: 138 GIVYFTDVSTLYDDRGVQQIXDTSDKTGRLXKYDPSTKETTLLXKELHVPGGAEVSADSS 197
Query: 203 FVVVCESWKFRCRRYWLKGDRAGILDAFIENLPGGPDNINLAPDGSFWI 251
FV+V E + +YWL+G + G + ++ +P P NI DG FW+
Sbjct: 198 FVLVAEFLSHQIVKYWLEGPKKGTAEVLVK-IP-NPGNIKRNADGHFWV 244
>pdb|2DSO|A Chain A, Crystal Structure Of D138n Mutant Of Drp35, A 35kda Drug
Responsive Protein From Staphylococcus Aureus
pdb|2DSO|B Chain B, Crystal Structure Of D138n Mutant Of Drp35, A 35kda Drug
Responsive Protein From Staphylococcus Aureus
pdb|2DSO|C Chain C, Crystal Structure Of D138n Mutant Of Drp35, A 35kda Drug
Responsive Protein From Staphylococcus Aureus
pdb|2DSO|D Chain D, Crystal Structure Of D138n Mutant Of Drp35, A 35kda Drug
Responsive Protein From Staphylococcus Aureus
pdb|2DSO|E Chain E, Crystal Structure Of D138n Mutant Of Drp35, A 35kda Drug
Responsive Protein From Staphylococcus Aureus
pdb|2DSO|F Chain F, Crystal Structure Of D138n Mutant Of Drp35, A 35kda Drug
Responsive Protein From Staphylococcus Aureus
Length = 333
Score = 42.7 bits (99), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 45/167 (26%), Positives = 69/167 (41%), Gaps = 28/167 (16%)
Query: 103 KDGGVILC-----DNEKGLLKVTEEG--VEAIVPDASFT---NDVIAASDGTLYFTVAST 152
KDG + +C + G+ TE G ++ I+ D S ND++ S G YFT
Sbjct: 96 KDGRLFVCYLGDFKSTGGIFAATENGDNLQDIIEDLSTAYCINDMVFDSKGGFYFT---- 151
Query: 153 KYTPTDFYKDMAEGKPYGQLRKYDPKLKETTVLHEGFYFANGIALSKNEDFVVVCESWKF 212
DF P G + P + T + + ANGIALS +E + V E+
Sbjct: 152 -----DFRG--YSTNPLGGVYYVSPDFRTVTPIIQNISVANGIALSTDEKVLWVTETTAN 204
Query: 213 RCRRYWLKGDRAGILDAFIENLP------GGPDNINLAPDGSFWIGL 253
R R L+ D I F +P GPD+ + D + ++ +
Sbjct: 205 RLHRIALEDDGVTI-QPFGATIPYYFTGHEGPDSCCIDSDDNLYVAM 250
>pdb|2DG1|A Chain A, Crystal Structure Of Drp35, A 35kda Drug Responsive
Protein From Staphylococcus Aureus, Complexed With Ca2+
pdb|2DG1|B Chain B, Crystal Structure Of Drp35, A 35kda Drug Responsive
Protein From Staphylococcus Aureus, Complexed With Ca2+
pdb|2DG1|C Chain C, Crystal Structure Of Drp35, A 35kda Drug Responsive
Protein From Staphylococcus Aureus, Complexed With Ca2+
pdb|2DG1|D Chain D, Crystal Structure Of Drp35, A 35kda Drug Responsive
Protein From Staphylococcus Aureus, Complexed With Ca2+
pdb|2DG1|E Chain E, Crystal Structure Of Drp35, A 35kda Drug Responsive
Protein From Staphylococcus Aureus, Complexed With Ca2+
pdb|2DG1|F Chain F, Crystal Structure Of Drp35, A 35kda Drug Responsive
Protein From Staphylococcus Aureus, Complexed With Ca2+
Length = 333
Score = 40.8 bits (94), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 44/167 (26%), Positives = 69/167 (41%), Gaps = 28/167 (16%)
Query: 103 KDGGVILC-----DNEKGLLKVTEEG--VEAIVPDASFT---NDVIAASDGTLYFTVAST 152
KDG + +C + G+ TE G ++ I+ D S +D++ S G YFT
Sbjct: 96 KDGRLFVCYLGDFKSTGGIFAATENGDNLQDIIEDLSTAYCIDDMVFDSKGGFYFT---- 151
Query: 153 KYTPTDFYKDMAEGKPYGQLRKYDPKLKETTVLHEGFYFANGIALSKNEDFVVVCESWKF 212
DF P G + P + T + + ANGIALS +E + V E+
Sbjct: 152 -----DFRG--YSTNPLGGVYYVSPDFRTVTPIIQNISVANGIALSTDEKVLWVTETTAN 204
Query: 213 RCRRYWLKGDRAGILDAFIENLP------GGPDNINLAPDGSFWIGL 253
R R L+ D I F +P GPD+ + D + ++ +
Sbjct: 205 RLHRIALEDDGVTI-QPFGATIPYYFTGHEGPDSCCIDSDDNLYVAM 250
>pdb|2DG0|A Chain A, Crystal Structure Of Drp35, A 35kda Drug Responsive
Protein From Staphylococcus Aureus
pdb|2DG0|B Chain B, Crystal Structure Of Drp35, A 35kda Drug Responsive
Protein From Staphylococcus Aureus
pdb|2DG0|C Chain C, Crystal Structure Of Drp35, A 35kda Drug Responsive
Protein From Staphylococcus Aureus
pdb|2DG0|D Chain D, Crystal Structure Of Drp35, A 35kda Drug Responsive
Protein From Staphylococcus Aureus
pdb|2DG0|E Chain E, Crystal Structure Of Drp35, A 35kda Drug Responsive
Protein From Staphylococcus Aureus
pdb|2DG0|F Chain F, Crystal Structure Of Drp35, A 35kda Drug Responsive
Protein From Staphylococcus Aureus
pdb|2DG0|G Chain G, Crystal Structure Of Drp35, A 35kda Drug Responsive
Protein From Staphylococcus Aureus
pdb|2DG0|H Chain H, Crystal Structure Of Drp35, A 35kda Drug Responsive
Protein From Staphylococcus Aureus
pdb|2DG0|I Chain I, Crystal Structure Of Drp35, A 35kda Drug Responsive
Protein From Staphylococcus Aureus
pdb|2DG0|J Chain J, Crystal Structure Of Drp35, A 35kda Drug Responsive
Protein From Staphylococcus Aureus
pdb|2DG0|K Chain K, Crystal Structure Of Drp35, A 35kda Drug Responsive
Protein From Staphylococcus Aureus
pdb|2DG0|L Chain L, Crystal Structure Of Drp35, A 35kda Drug Responsive
Protein From Staphylococcus Aureus
Length = 333
Score = 38.9 bits (89), Expect = 0.005, Method: Compositional matrix adjust.
Identities = 44/165 (26%), Positives = 67/165 (40%), Gaps = 28/165 (16%)
Query: 103 KDGGVILC-----DNEKGLLKVTEEG--VEAIVPDASFT---NDVIAASDGTLYFTVAST 152
KDG + +C + G+ TE G ++ I+ D S +D + S G YFT
Sbjct: 96 KDGRLFVCYLGDFKSTGGIFAATENGDNLQDIIEDLSTAYCIDDXVFDSKGGFYFT---- 151
Query: 153 KYTPTDFYKDMAEGKPYGQLRKYDPKLKETTVLHEGFYFANGIALSKNEDFVVVCESWKF 212
DF P G + P + T + + ANGIALS +E + V E+
Sbjct: 152 -----DFRG--YSTNPLGGVYYVSPDFRTVTPIIQNISVANGIALSTDEKVLWVTETTAN 204
Query: 213 RCRRYWLKGDRAGILDAFIENLP------GGPDNINLAPDGSFWI 251
R R L+ D I F +P GPD+ + D + ++
Sbjct: 205 RLHRIALEDDGVTI-QPFGATIPYYFTGHEGPDSCCIDSDDNLYV 248
>pdb|1V04|A Chain A, Serum Paraoxonase By Directed Evolution
pdb|3SRE|A Chain A, Serum Paraoxonase-1 By Directed Evolution At Ph 6.5
pdb|3SRG|A Chain A, Serum Paraoxonase-1 By Directed Evolution At Ph 6.5 In
Complex With 2- Hydroxyquinoline
Length = 355
Score = 35.4 bits (80), Expect = 0.043, Method: Compositional matrix adjust.
Identities = 35/128 (27%), Positives = 54/128 (42%), Gaps = 20/128 (15%)
Query: 134 TNDVIAASDGTLYFTVASTKYTPTDFYK--DMAEGKPYGQLRKYDPKLKETTVLHEGFYF 191
ND++A G +F + Y + K +M G + + Y P + V+ EGF F
Sbjct: 167 VNDIVAV--GPEHFYATNDHYFIDPYLKSWEMHLGLAWSFVTYYSPN--DVRVVAEGFDF 222
Query: 192 ANGIALSKNEDFVVVCESWKFRCRRY-----W-LKGDRAGILDAFIENLPGGPDNINLAP 245
ANGI +S + +V + E + Y W L R D + DNI++ P
Sbjct: 223 ANGINISPDGKYVYIAELLAHKIHVYEKHANWTLTPLRVLSFDTLV-------DNISVDP 275
Query: 246 -DGSFWIG 252
G W+G
Sbjct: 276 VTGDLWVG 283
>pdb|3TFM|A Chain A, Myosin X Ph1n-Ph2-Ph1c Tandem
Length = 228
Score = 34.7 bits (78), Expect = 0.082, Method: Compositional matrix adjust.
Identities = 23/96 (23%), Positives = 44/96 (45%), Gaps = 7/96 (7%)
Query: 64 GALYTATRDGWVK-YFILHNETLVNWKHIDSQSLLGLTTTKDGGVILCDNEKGLLKVTEE 122
G T +R W K +F+L L+ +++ + L G + I+ + K E
Sbjct: 69 GGSSTLSRRNWKKRWFVLRQSKLMYFENDSEEKLKGTVEVRSAKEIIDNTNK------EN 122
Query: 123 GVEAIVPDASFTNDVIAASDGTLYFTVASTKYTPTD 158
G++ I+ D +F + D + +F+V S ++ TD
Sbjct: 123 GIDIIMADRTFHLIAESPEDASQWFSVLSQVHSSTD 158
>pdb|1TT5|B Chain B, Structure Of Appbp1-Uba3-Ubc12n26: A Unique E1-E2
Interaction Required For Optimal Conjugation Of The
Ubiquitin-Like Protein Nedd8
pdb|1TT5|D Chain D, Structure Of Appbp1-Uba3-Ubc12n26: A Unique E1-E2
Interaction Required For Optimal Conjugation Of The
Ubiquitin-Like Protein Nedd8
Length = 434
Score = 33.5 bits (75), Expect = 0.21, Method: Compositional matrix adjust.
Identities = 16/43 (37%), Positives = 26/43 (60%)
Query: 118 KVTEEGVEAIVPDASFTNDVIAASDGTLYFTVASTKYTPTDFY 160
++T+ V+ I+P + TN VIAA T F +A++ Y P + Y
Sbjct: 271 RLTQGVVKRIIPAVASTNAVIAAVCATEVFKIATSAYIPLNNY 313
>pdb|1R4M|B Chain B, Appbp1-Uba3-Nedd8, An E1-Ubiquitin-Like Protein Complex
pdb|1R4M|D Chain D, Appbp1-Uba3-Nedd8, An E1-Ubiquitin-Like Protein Complex
pdb|1R4M|F Chain F, Appbp1-Uba3-Nedd8, An E1-Ubiquitin-Like Protein Complex
pdb|1R4M|H Chain H, Appbp1-Uba3-Nedd8, An E1-Ubiquitin-Like Protein Complex
pdb|1R4N|B Chain B, Appbp1-Uba3-Nedd8, An E1-Ubiquitin-Like Protein Complex
With Atp
pdb|1R4N|D Chain D, Appbp1-Uba3-Nedd8, An E1-Ubiquitin-Like Protein Complex
With Atp
pdb|1R4N|F Chain F, Appbp1-Uba3-Nedd8, An E1-Ubiquitin-Like Protein Complex
With Atp
pdb|1R4N|H Chain H, Appbp1-Uba3-Nedd8, An E1-Ubiquitin-Like Protein Complex
With Atp
Length = 431
Score = 33.1 bits (74), Expect = 0.22, Method: Compositional matrix adjust.
Identities = 16/43 (37%), Positives = 26/43 (60%)
Query: 118 KVTEEGVEAIVPDASFTNDVIAASDGTLYFTVASTKYTPTDFY 160
++T+ V+ I+P + TN VIAA T F +A++ Y P + Y
Sbjct: 268 RLTQGVVKRIIPAVASTNAVIAAVCATEVFKIATSAYIPLNNY 310
>pdb|3DBR|B Chain B, Structural Dissection Of A Gating Mechanism Preventing
Misactivation Of Ubiquitin By Nedd8's E1 (Appbp1-
Uba3arg190gln-Nedd8ala72arg)
pdb|3DBR|D Chain D, Structural Dissection Of A Gating Mechanism Preventing
Misactivation Of Ubiquitin By Nedd8's E1 (Appbp1-
Uba3arg190gln-Nedd8ala72arg)
pdb|3DBR|F Chain F, Structural Dissection Of A Gating Mechanism Preventing
Misactivation Of Ubiquitin By Nedd8's E1 (Appbp1-
Uba3arg190gln-Nedd8ala72arg)
pdb|3DBR|H Chain H, Structural Dissection Of A Gating Mechanism Preventing
Misactivation Of Ubiquitin By Nedd8's E1 (Appbp1-
Uba3arg190gln-Nedd8ala72arg)
Length = 434
Score = 33.1 bits (74), Expect = 0.22, Method: Compositional matrix adjust.
Identities = 16/43 (37%), Positives = 26/43 (60%)
Query: 118 KVTEEGVEAIVPDASFTNDVIAASDGTLYFTVASTKYTPTDFY 160
++T+ V+ I+P + TN VIAA T F +A++ Y P + Y
Sbjct: 271 RLTQGVVKRIIPAVASTNAVIAAVCATEVFKIATSAYIPLNNY 313
>pdb|3DBL|B Chain B, Structural Dissection Of A Gating Mechanism Preventing
Misactivation Of Ubiquitin By Nedd8's E1 (Appbp1-
Uba3arg190wt-Nedd8ala72gln)
pdb|3DBL|D Chain D, Structural Dissection Of A Gating Mechanism Preventing
Misactivation Of Ubiquitin By Nedd8's E1 (Appbp1-
Uba3arg190wt-Nedd8ala72gln)
pdb|3DBL|F Chain F, Structural Dissection Of A Gating Mechanism Preventing
Misactivation Of Ubiquitin By Nedd8's E1 (Appbp1-
Uba3arg190wt-Nedd8ala72gln)
pdb|3DBL|H Chain H, Structural Dissection Of A Gating Mechanism Preventing
Misactivation Of Ubiquitin By Nedd8's E1 (Appbp1-
Uba3arg190wt-Nedd8ala72gln)
Length = 434
Score = 33.1 bits (74), Expect = 0.22, Method: Compositional matrix adjust.
Identities = 16/43 (37%), Positives = 26/43 (60%)
Query: 118 KVTEEGVEAIVPDASFTNDVIAASDGTLYFTVASTKYTPTDFY 160
++T+ V+ I+P + TN VIAA T F +A++ Y P + Y
Sbjct: 271 RLTQGVVKRIIPAVASTNAVIAAVCATEVFKIATSAYIPLNNY 313
>pdb|3GZN|B Chain B, Structure Of Nedd8-Activating Enzyme In Complex With Nedd8
And Mln4924
pdb|3GZN|D Chain D, Structure Of Nedd8-Activating Enzyme In Complex With Nedd8
And Mln4924
Length = 463
Score = 33.1 bits (74), Expect = 0.23, Method: Compositional matrix adjust.
Identities = 16/43 (37%), Positives = 26/43 (60%)
Query: 118 KVTEEGVEAIVPDASFTNDVIAASDGTLYFTVASTKYTPTDFY 160
++T+ V+ I+P + TN VIAA T F +A++ Y P + Y
Sbjct: 300 RLTQGVVKRIIPAVASTNAVIAAVCATEVFKIATSAYIPLNNY 342
>pdb|1YOV|B Chain B, Insights Into The Ubiquitin Transfer Cascade From The
Refined Structure Of The Activating Enzyme For Nedd8
pdb|1YOV|D Chain D, Insights Into The Ubiquitin Transfer Cascade From The
Refined Structure Of The Activating Enzyme For Nedd8
Length = 444
Score = 33.1 bits (74), Expect = 0.23, Method: Compositional matrix adjust.
Identities = 16/43 (37%), Positives = 26/43 (60%)
Query: 118 KVTEEGVEAIVPDASFTNDVIAASDGTLYFTVASTKYTPTDFY 160
++T+ V+ I+P + TN VIAA T F +A++ Y P + Y
Sbjct: 281 RLTQGVVKRIIPAVASTNAVIAAVCATEVFKIATSAYIPLNNY 323
>pdb|3DBH|B Chain B, Structural Dissection Of A Gating Mechanism Preventing
Misactivation Of Ubiquitin By Nedd8's E1 (Appbp1-
Uba3arg190ala-Nedd8ala72arg)
pdb|3DBH|D Chain D, Structural Dissection Of A Gating Mechanism Preventing
Misactivation Of Ubiquitin By Nedd8's E1 (Appbp1-
Uba3arg190ala-Nedd8ala72arg)
pdb|3DBH|F Chain F, Structural Dissection Of A Gating Mechanism Preventing
Misactivation Of Ubiquitin By Nedd8's E1 (Appbp1-
Uba3arg190ala-Nedd8ala72arg)
pdb|3DBH|H Chain H, Structural Dissection Of A Gating Mechanism Preventing
Misactivation Of Ubiquitin By Nedd8's E1 (Appbp1-
Uba3arg190ala-Nedd8ala72arg)
Length = 434
Score = 33.1 bits (74), Expect = 0.23, Method: Compositional matrix adjust.
Identities = 16/43 (37%), Positives = 26/43 (60%)
Query: 118 KVTEEGVEAIVPDASFTNDVIAASDGTLYFTVASTKYTPTDFY 160
++T+ V+ I+P + TN VIAA T F +A++ Y P + Y
Sbjct: 271 RLTQGVVKRIIPAVASTNAVIAAVCATEVFKIATSAYIPLNNY 313
>pdb|2NVU|B Chain B, Structure Of Appbp1-Uba3~nedd8-Nedd8-Mgatp-Ubc12(C111a), A
Trapped Ubiquitin-Like Protein Activation Complex
Length = 805
Score = 32.7 bits (73), Expect = 0.35, Method: Compositional matrix adjust.
Identities = 16/43 (37%), Positives = 26/43 (60%)
Query: 118 KVTEEGVEAIVPDASFTNDVIAASDGTLYFTVASTKYTPTDFY 160
++T+ V+ I+P + TN VIAA T F +A++ Y P + Y
Sbjct: 642 RLTQGVVKRIIPAVASTNAVIAAVCATEVFKIATSAYIPLNNY 684
>pdb|3E5Z|A Chain A, X-Ray Structure Of The Putative Gluconolactonase In
Protein Family Pf08450. Northeast Structural Genomics
Consortium Target Drr130.
pdb|3E5Z|B Chain B, X-Ray Structure Of The Putative Gluconolactonase In
Protein Family Pf08450. Northeast Structural Genomics
Consortium Target Drr130
Length = 296
Score = 31.6 bits (70), Expect = 0.66, Method: Compositional matrix adjust.
Identities = 17/62 (27%), Positives = 27/62 (43%)
Query: 190 YFANGIALSKNEDFVVVCESWKFRCRRYWLKGDRAGILDAFIENLPGGPDNINLAPDGSF 249
+ NG L+K + + R+ G+ I D+F P+++ LAPDGS
Sbjct: 69 HHQNGHCLNKQGHLIACSHGLRRLERQREPGGEWESIADSFEGKKLNSPNDVCLAPDGSL 128
Query: 250 WI 251
W
Sbjct: 129 WF 130
>pdb|1OJQ|A Chain A, The Crystal Structure Of C3stau2 From S. Aureus
pdb|1OJZ|A Chain A, The Crystal Structure Of C3stau2 From S. Aureus In With
Nad
Length = 212
Score = 30.8 bits (68), Expect = 1.2, Method: Compositional matrix adjust.
Identities = 15/33 (45%), Positives = 19/33 (57%)
Query: 274 LDAYPGLISLLLPMGSDAGARVVKVDGNDGKII 306
L AYPG +LLP G++ VK+ N KII
Sbjct: 172 LTAYPGQQEVLLPRGTEYAVGSVKLSDNKRKII 204
>pdb|4EKJ|A Chain A, Crystal Structure Of A Monomeric Beta-xylosidase From
Caulobacter Crescentus Cb15
Length = 500
Score = 28.5 bits (62), Expect = 5.7, Method: Compositional matrix adjust.
Identities = 31/98 (31%), Positives = 40/98 (40%), Gaps = 19/98 (19%)
Query: 73 GWVKYFILHNETLVNWKHIDSQSLLGLTTTK----DGGVILCDNEKGLLKVT-EEGVEAI 127
WV F+ H + S S + TT DGG + +EKG+ +A+
Sbjct: 207 AWVPEFLAHVKK--------SGSAVDFVTTHTYGVDGGFL---DEKGVQDTKLSPSPDAV 255
Query: 128 VPDASFTNDVIAASDGT---LYFTVASTKYTPTDFYKD 162
V D + I AS LYFT ST YTP D D
Sbjct: 256 VGDVRRVREQIEASAFPGLPLYFTEWSTSYTPRDSVHD 293
>pdb|3ABO|A Chain A, Crystal Structure Of Ethanolamine Ammonia-Lyase From
Escherichia Coli Complexed With Cn-Cbl And Ethanolamine
pdb|3ABO|C Chain C, Crystal Structure Of Ethanolamine Ammonia-Lyase From
Escherichia Coli Complexed With Cn-Cbl And Ethanolamine
pdb|3ABQ|A Chain A, Crystal Structure Of Ethanolamine Ammonia-Lyase From
Escherichia Coli Complexed With Cn-Cbl And
2-Amino-1-Propanol
pdb|3ABQ|C Chain C, Crystal Structure Of Ethanolamine Ammonia-Lyase From
Escherichia Coli Complexed With Cn-Cbl And
2-Amino-1-Propanol
pdb|3ABR|A Chain A, Crystal Structure Of Ethanolamine Ammonia-Lyase From
Escherichia Coli Complexed With Cn-Cbl (Substrate-Free
Form)
pdb|3ABR|C Chain C, Crystal Structure Of Ethanolamine Ammonia-Lyase From
Escherichia Coli Complexed With Cn-Cbl (Substrate-Free
Form)
pdb|3ABS|A Chain A, Crystal Structure Of Ethanolamine Ammonia-Lyase From
Escheri Complexed With Adeninylpentylcobalamin And
Ethanolamine
pdb|3ABS|C Chain C, Crystal Structure Of Ethanolamine Ammonia-Lyase From
Escheri Complexed With Adeninylpentylcobalamin And
Ethanolamine
pdb|3ANY|A Chain A, Crystal Structure Of Ethanolamine Ammonia-Lyase From
Escherichia Coli Complexed With Cn-Cbl And
(R)-2-Amino-1-Propanol
pdb|3ANY|C Chain C, Crystal Structure Of Ethanolamine Ammonia-Lyase From
Escherichia Coli Complexed With Cn-Cbl And
(R)-2-Amino-1-Propanol
pdb|3AO0|A Chain A, Crystal Structure Of Ethanolamine Ammonia-Lyase From
Escherichia Coli Complexed With Cn-Cbl And
(S)-2-Amino-1-Propanol
pdb|3AO0|C Chain C, Crystal Structure Of Ethanolamine Ammonia-Lyase From
Escherichia Coli Complexed With Cn-Cbl And
(S)-2-Amino-1-Propanol
Length = 453
Score = 27.7 bits (60), Expect = 9.1, Method: Compositional matrix adjust.
Identities = 33/108 (30%), Positives = 45/108 (41%), Gaps = 20/108 (18%)
Query: 90 HIDSQSLLGLTTTKDGGVI---LCDNEKGLLKVTEEGVEAIVPD------ASFTNDVIAA 140
H+ +Q + + GG+I +C +EKGL E GVE + D A F A
Sbjct: 227 HVTTQ-IEAIRRGAPGGLIFQSICGSEKGL---KEFGVELAMLDEARAVGAEFNR---IA 279
Query: 141 SDGTLYFTVA--STKYTPTDFYKDMA--EGKPYGQLRKYDPKLKETTV 184
+ LYF S +F D E + YG R YDP + T V
Sbjct: 280 GENCLYFETGQGSALSAGANFGADQVTMEARNYGLARHYDPFIVNTVV 327
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.320 0.139 0.426
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 11,193,235
Number of Sequences: 62578
Number of extensions: 496589
Number of successful extensions: 1192
Number of sequences better than 100.0: 23
Number of HSP's better than 100.0 without gapping: 19
Number of HSP's successfully gapped in prelim test: 4
Number of HSP's that attempted gapping in prelim test: 1166
Number of HSP's gapped (non-prelim): 27
length of query: 355
length of database: 14,973,337
effective HSP length: 100
effective length of query: 255
effective length of database: 8,715,537
effective search space: 2222461935
effective search space used: 2222461935
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 52 (24.6 bits)