Query 018474
Match_columns 355
No_of_seqs 192 out of 2186
Neff 9.5
Searched_HMMs 46136
Date Fri Mar 29 09:19:38 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/018474.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/018474hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 KOG1520 Predicted alkaloid syn 100.0 5.7E-45 1.2E-49 324.1 30.9 307 37-346 50-376 (376)
2 PF08450 SGL: SMP-30/Gluconola 100.0 1.1E-26 2.3E-31 206.1 27.4 227 54-335 2-245 (246)
3 COG3386 Gluconolactonase [Carb 100.0 7.5E-26 1.6E-30 203.6 30.1 240 51-339 24-279 (307)
4 COG4257 Vgb Streptogramin lyas 99.9 3.2E-20 6.8E-25 157.8 23.2 242 44-347 54-306 (353)
5 PF03088 Str_synth: Strictosid 99.8 8.2E-20 1.8E-24 132.4 8.4 88 135-222 1-89 (89)
6 PLN02919 haloacid dehalogenase 99.8 4.1E-16 8.8E-21 162.5 33.7 245 50-350 566-892 (1057)
7 COG4257 Vgb Streptogramin lyas 99.8 1.1E-16 2.3E-21 136.4 23.6 242 42-346 94-347 (353)
8 KOG4499 Ca2+-binding protein R 99.7 1.7E-14 3.7E-19 120.4 23.3 232 52-335 18-274 (310)
9 PF10282 Lactonase: Lactonase, 99.6 2.7E-13 5.8E-18 126.1 27.3 259 36-352 23-328 (345)
10 PF08450 SGL: SMP-30/Gluconola 99.6 2.2E-14 4.8E-19 127.1 18.3 178 52-254 40-245 (246)
11 COG2706 3-carboxymuconate cycl 99.6 1.1E-12 2.3E-17 116.2 28.0 262 36-353 26-328 (346)
12 PLN02919 haloacid dehalogenase 99.6 3.9E-13 8.5E-18 140.4 27.1 186 51-255 623-878 (1057)
13 PRK11028 6-phosphogluconolacto 99.6 5.3E-12 1.2E-16 116.8 29.0 255 37-349 22-307 (330)
14 PF10282 Lactonase: Lactonase, 99.5 1.2E-11 2.6E-16 115.1 26.6 199 38-254 74-311 (345)
15 COG2706 3-carboxymuconate cycl 99.5 5.2E-11 1.1E-15 105.6 25.5 224 36-311 74-333 (346)
16 TIGR02604 Piru_Ver_Nterm putat 99.4 5.9E-11 1.3E-15 111.3 19.8 165 49-218 11-211 (367)
17 PRK11028 6-phosphogluconolacto 99.3 2.7E-09 5.8E-14 98.8 28.1 183 52-253 80-292 (330)
18 COG3292 Predicted periplasmic 99.3 1.5E-10 3.3E-15 108.2 16.9 141 53-219 166-316 (671)
19 TIGR03866 PQQ_ABC_repeats PQQ- 99.3 3.3E-08 7E-13 89.4 31.5 239 52-349 31-282 (300)
20 COG3386 Gluconolactonase [Carb 99.3 5.3E-10 1.2E-14 101.1 19.4 177 53-256 68-277 (307)
21 TIGR03866 PQQ_ABC_repeats PQQ- 99.2 6.9E-08 1.5E-12 87.2 30.7 224 65-347 2-238 (300)
22 PF03022 MRJP: Major royal jel 99.2 6.6E-09 1.4E-13 93.6 21.9 183 95-335 3-254 (287)
23 TIGR02604 Piru_Ver_Nterm putat 99.2 4.1E-09 8.9E-14 98.8 21.3 205 44-255 65-340 (367)
24 COG3391 Uncharacterized conser 99.1 2E-07 4.4E-12 87.8 28.9 242 52-347 31-284 (381)
25 TIGR02658 TTQ_MADH_Hv methylam 99.0 2.3E-06 5.1E-11 78.7 29.6 246 63-348 12-332 (352)
26 COG3292 Predicted periplasmic 99.0 1.3E-08 2.7E-13 95.6 14.0 195 53-255 207-438 (671)
27 KOG4659 Uncharacterized conser 99.0 6.3E-07 1.4E-11 91.0 26.3 177 52-255 407-681 (1899)
28 COG3391 Uncharacterized conser 98.9 3.3E-07 7.1E-12 86.4 21.8 182 52-254 74-271 (381)
29 PF07995 GSDH: Glucose / Sorbo 98.9 4.3E-07 9.4E-12 83.9 21.2 154 52-212 2-203 (331)
30 cd00200 WD40 WD40 domain, foun 98.9 7.8E-06 1.7E-10 72.0 27.8 178 55-254 55-238 (289)
31 cd00200 WD40 WD40 domain, foun 98.8 1.7E-05 3.6E-10 69.9 27.6 180 52-253 10-196 (289)
32 PRK04792 tolB translocation pr 98.8 6.6E-06 1.4E-10 79.3 26.5 203 56-314 222-437 (448)
33 TIGR03300 assembly_YfgL outer 98.8 4.3E-05 9.4E-10 72.0 30.5 221 55-347 59-298 (377)
34 KOG1214 Nidogen and related ba 98.8 4E-07 8.7E-12 88.7 16.5 183 52-255 1025-1216(1289)
35 PF02239 Cytochrom_D1: Cytochr 98.7 2E-05 4.2E-10 73.9 26.9 173 63-255 5-191 (369)
36 PRK04922 tolB translocation pr 98.7 1.4E-05 3E-10 76.9 26.1 204 55-314 207-423 (433)
37 KOG1214 Nidogen and related ba 98.7 1.6E-06 3.5E-11 84.6 19.0 194 93-348 1025-1228(1289)
38 KOG1446 Histone H3 (Lys4) meth 98.7 0.0001 2.2E-09 64.9 28.3 239 51-347 14-263 (311)
39 PRK05137 tolB translocation pr 98.7 4.5E-05 9.7E-10 73.4 28.7 158 74-251 183-349 (435)
40 PRK02889 tolB translocation pr 98.7 2.7E-05 5.9E-10 74.7 27.1 203 56-314 200-415 (427)
41 KOG1520 Predicted alkaloid syn 98.7 2.9E-07 6.2E-12 83.5 12.3 150 49-217 112-292 (376)
42 PRK00178 tolB translocation pr 98.6 4.2E-05 9.1E-10 73.5 27.2 176 55-251 202-389 (430)
43 PF01731 Arylesterase: Arylest 98.6 2.5E-07 5.5E-12 66.8 8.7 84 135-220 1-84 (86)
44 KOG4659 Uncharacterized conser 98.6 7.5E-06 1.6E-10 83.5 21.9 198 50-257 363-614 (1899)
45 PRK05137 tolB translocation pr 98.6 5E-05 1.1E-09 73.1 26.6 174 55-249 205-390 (435)
46 PRK03629 tolB translocation pr 98.6 9.8E-05 2.1E-09 70.9 27.8 178 55-253 202-391 (429)
47 PRK04792 tolB translocation pr 98.6 0.00015 3.2E-09 70.0 28.7 160 74-253 199-367 (448)
48 PRK03629 tolB translocation pr 98.6 0.00018 4E-09 69.0 28.8 160 74-253 180-348 (429)
49 PF03022 MRJP: Major royal jel 98.6 1.1E-05 2.4E-10 72.8 19.0 180 56-255 5-255 (287)
50 KOG0291 WD40-repeat-containing 98.5 8.4E-05 1.8E-09 72.3 25.4 187 49-256 348-542 (893)
51 TIGR02800 propeller_TolB tol-p 98.5 0.00013 2.7E-09 69.7 27.0 178 56-254 194-384 (417)
52 PRK04922 tolB translocation pr 98.5 0.00019 4.2E-09 69.0 27.5 158 74-251 185-351 (433)
53 PF02239 Cytochrom_D1: Cytochr 98.5 5.8E-05 1.3E-09 70.7 23.2 160 44-221 30-203 (369)
54 PRK04043 tolB translocation pr 98.5 0.00021 4.6E-09 68.2 27.1 202 56-315 192-413 (419)
55 PRK01742 tolB translocation pr 98.5 0.00015 3.3E-09 69.6 25.5 176 54-255 206-391 (429)
56 TIGR03606 non_repeat_PQQ dehyd 98.5 2.8E-05 6.1E-10 73.9 19.7 116 124-256 22-166 (454)
57 PRK11138 outer membrane biogen 98.4 0.00016 3.4E-09 68.7 24.9 64 57-123 116-180 (394)
58 TIGR03606 non_repeat_PQQ dehyd 98.4 3.3E-05 7.1E-10 73.4 19.9 172 43-218 22-260 (454)
59 PRK02889 tolB translocation pr 98.4 0.00042 9.2E-09 66.5 27.9 135 98-251 200-343 (427)
60 PRK11138 outer membrane biogen 98.4 0.00089 1.9E-08 63.6 29.7 138 57-221 65-224 (394)
61 KOG0318 WD40 repeat stress pro 98.4 0.00038 8.2E-09 65.3 25.6 189 45-257 314-509 (603)
62 PF06977 SdiA-regulated: SdiA- 98.4 0.00016 3.4E-09 63.6 22.2 188 49-255 19-241 (248)
63 KOG0291 WD40-repeat-containing 98.4 0.0003 6.6E-09 68.6 25.6 190 98-348 312-510 (893)
64 KOG0315 G-protein beta subunit 98.4 0.00011 2.3E-09 62.8 19.6 183 52-255 84-278 (311)
65 TIGR03032 conserved hypothetic 98.4 0.00025 5.5E-09 63.1 22.7 223 51-312 48-301 (335)
66 PF07995 GSDH: Glucose / Sorbo 98.4 5.2E-06 1.1E-10 76.7 12.6 202 51-255 48-325 (331)
67 PRK00178 tolB translocation pr 98.4 0.00085 1.8E-08 64.5 28.2 157 75-251 181-346 (430)
68 COG2133 Glucose/sorbosone dehy 98.4 0.00098 2.1E-08 62.2 27.0 164 44-214 60-263 (399)
69 PF06977 SdiA-regulated: SdiA- 98.4 0.00035 7.6E-09 61.4 23.0 196 93-344 22-248 (248)
70 TIGR03300 assembly_YfgL outer 98.4 0.00032 7E-09 66.1 24.4 128 167-343 248-376 (377)
71 KOG0279 G protein beta subunit 98.3 0.0014 3E-08 57.0 25.2 224 63-348 28-264 (315)
72 TIGR02658 TTQ_MADH_Hv methylam 98.3 0.00028 6E-09 65.2 22.5 108 105-222 13-138 (352)
73 KOG1446 Histone H3 (Lys4) meth 98.3 0.00041 8.9E-09 61.1 21.4 157 44-221 93-263 (311)
74 KOG0266 WD40 repeat-containing 98.3 0.00086 1.9E-08 64.9 26.2 183 54-255 162-354 (456)
75 TIGR02800 propeller_TolB tol-p 98.3 0.0014 3E-08 62.5 27.5 161 74-254 171-340 (417)
76 PRK04043 tolB translocation pr 98.3 0.0013 2.8E-08 62.8 26.9 156 74-253 170-336 (419)
77 PF13360 PQQ_2: PQQ-like domai 98.3 0.00087 1.9E-08 58.5 23.6 210 72-348 2-232 (238)
78 PF13360 PQQ_2: PQQ-like domai 98.2 0.0022 4.7E-08 56.0 24.3 168 58-254 32-220 (238)
79 PF05096 Glu_cyclase_2: Glutam 98.1 0.00078 1.7E-08 59.1 20.0 146 51-219 89-260 (264)
80 COG3204 Uncharacterized protei 98.1 0.0027 5.8E-08 56.0 22.8 186 51-255 85-303 (316)
81 PF05096 Glu_cyclase_2: Glutam 98.1 0.0014 2.9E-08 57.6 19.8 157 132-347 45-204 (264)
82 KOG2055 WD40 repeat protein [G 98.1 0.0028 6E-08 58.7 22.5 182 52-255 214-406 (514)
83 PRK01742 tolB translocation pr 98.0 0.0039 8.4E-08 59.9 25.0 156 74-252 185-349 (429)
84 KOG0279 G protein beta subunit 98.0 0.0075 1.6E-07 52.6 24.0 242 46-346 58-313 (315)
85 KOG0282 mRNA splicing factor [ 98.0 0.00032 6.8E-09 65.1 15.8 187 49-255 256-452 (503)
86 KOG0266 WD40 repeat-containing 98.0 0.004 8.6E-08 60.3 24.6 155 48-221 200-365 (456)
87 PTZ00421 coronin; Provisional 98.0 0.02 4.4E-07 55.8 29.0 152 52-221 76-246 (493)
88 PRK01029 tolB translocation pr 98.0 0.0095 2.1E-07 57.2 25.9 174 56-249 189-384 (428)
89 COG4946 Uncharacterized protei 97.9 0.0081 1.8E-07 56.1 23.4 85 165-254 376-461 (668)
90 PF07433 DUF1513: Protein of u 97.9 0.01 2.2E-07 53.3 23.0 103 93-208 5-117 (305)
91 KOG1273 WD40 repeat protein [G 97.9 0.004 8.7E-08 55.2 19.6 227 52-314 24-293 (405)
92 PF14583 Pectate_lyase22: Olig 97.8 0.0061 1.3E-07 56.4 21.0 160 62-222 46-226 (386)
93 KOG4499 Ca2+-binding protein R 97.8 0.0024 5.3E-08 54.4 16.2 114 93-223 109-244 (310)
94 KOG0289 mRNA splicing factor [ 97.8 0.019 4.1E-07 53.1 22.7 185 98-343 308-502 (506)
95 PF02333 Phytase: Phytase; In 97.8 0.0038 8.3E-08 57.9 18.7 138 171-348 130-292 (381)
96 PRK02888 nitrous-oxide reducta 97.8 0.002 4.3E-08 63.1 17.6 87 170-256 296-395 (635)
97 PRK01029 tolB translocation pr 97.8 0.044 9.5E-07 52.6 28.6 162 74-251 166-342 (428)
98 PF05787 DUF839: Bacterial pro 97.8 0.00071 1.5E-08 66.1 14.4 75 132-207 436-519 (524)
99 KOG0278 Serine/threonine kinas 97.7 0.0055 1.2E-07 52.7 17.4 142 57-218 149-295 (334)
100 TIGR03118 PEPCTERM_chp_1 conse 97.7 0.016 3.6E-07 51.5 20.8 223 93-346 23-279 (336)
101 cd00216 PQQ_DH Dehydrogenases 97.7 0.036 7.7E-07 54.2 25.4 112 63-185 61-190 (488)
102 KOG0272 U4/U6 small nuclear ri 97.7 0.0051 1.1E-07 56.4 17.5 186 48-255 214-408 (459)
103 COG2133 Glucose/sorbosone dehy 97.7 0.0073 1.6E-07 56.4 18.9 158 98-255 181-386 (399)
104 KOG0316 Conserved WD40 repeat- 97.7 0.012 2.5E-07 50.3 18.3 171 59-253 25-201 (307)
105 KOG0318 WD40 repeat stress pro 97.7 0.055 1.2E-06 51.3 25.1 177 56-255 240-425 (603)
106 KOG0286 G-protein beta subunit 97.6 0.027 5.8E-07 49.6 20.5 151 49-219 143-302 (343)
107 KOG0275 Conserved WD40 repeat- 97.6 0.00089 1.9E-08 59.3 11.5 225 55-341 267-503 (508)
108 KOG1274 WD40 repeat protein [G 97.6 0.038 8.3E-07 55.6 23.3 152 51-222 13-170 (933)
109 PLN00181 protein SPA1-RELATED; 97.6 0.15 3.2E-06 53.2 30.2 149 54-221 486-649 (793)
110 cd00216 PQQ_DH Dehydrogenases 97.5 0.1 2.2E-06 51.0 27.4 254 64-346 111-424 (488)
111 KOG0271 Notchless-like WD40 re 97.5 0.0041 8.8E-08 56.4 14.5 186 44-255 240-471 (480)
112 COG3823 Glutamine cyclotransfe 97.5 0.0091 2E-07 50.1 15.4 39 170-208 196-247 (262)
113 COG1520 FOG: WD40-like repeat 97.5 0.054 1.2E-06 50.9 23.1 139 59-220 65-217 (370)
114 KOG0263 Transcription initiati 97.5 0.0068 1.5E-07 59.6 16.8 182 56-258 456-642 (707)
115 TIGR03032 conserved hypothetic 97.5 0.035 7.6E-07 49.8 19.9 203 66-334 20-259 (335)
116 KOG4649 PQQ (pyrrolo-quinoline 97.5 0.052 1.1E-06 47.2 20.1 65 59-123 101-167 (354)
117 COG4946 Uncharacterized protei 97.5 0.0094 2E-07 55.7 16.7 131 65-209 373-508 (668)
118 KOG2106 Uncharacterized conser 97.5 0.034 7.3E-07 52.4 20.2 147 51-221 329-478 (626)
119 PTZ00420 coronin; Provisional 97.5 0.11 2.4E-06 51.4 25.1 154 49-221 72-249 (568)
120 COG3490 Uncharacterized protei 97.4 0.056 1.2E-06 47.6 19.9 102 92-208 67-180 (366)
121 KOG0294 WD40 repeat-containing 97.4 0.077 1.7E-06 47.2 22.6 176 53-255 45-228 (362)
122 PLN00181 protein SPA1-RELATED; 97.4 0.21 4.5E-06 52.1 31.1 180 54-255 535-728 (793)
123 KOG1539 WD repeat protein [Gen 97.4 0.014 3.1E-07 57.9 17.8 148 53-218 450-646 (910)
124 PRK13684 Ycf48-like protein; P 97.4 0.12 2.7E-06 47.8 24.3 218 66-345 102-330 (334)
125 PF01436 NHL: NHL repeat; Int 97.4 0.00035 7.5E-09 39.1 3.7 27 190-217 2-28 (28)
126 PF03088 Str_synth: Strictosid 97.3 0.0014 3E-08 47.7 7.8 64 56-120 2-85 (89)
127 PRK13684 Ycf48-like protein; P 97.3 0.13 2.9E-06 47.6 29.0 179 52-255 46-234 (334)
128 KOG2106 Uncharacterized conser 97.3 0.15 3.2E-06 48.3 22.1 142 54-218 249-396 (626)
129 KOG0275 Conserved WD40 repeat- 97.3 0.023 4.9E-07 50.7 15.5 152 48-219 210-377 (508)
130 KOG0289 mRNA splicing factor [ 97.2 0.17 3.7E-06 47.0 21.4 169 64-255 232-408 (506)
131 PF08662 eIF2A: Eukaryotic tra 97.2 0.06 1.3E-06 45.7 17.9 131 74-222 40-181 (194)
132 TIGR03075 PQQ_enz_alc_DH PQQ-d 97.2 0.18 3.9E-06 49.8 23.5 107 63-184 69-195 (527)
133 KOG2055 WD40 repeat protein [G 97.2 0.043 9.3E-07 51.1 17.2 193 94-350 215-421 (514)
134 KOG0271 Notchless-like WD40 re 97.2 0.088 1.9E-06 48.1 18.7 200 49-255 198-429 (480)
135 PF07433 DUF1513: Protein of u 97.2 0.17 3.8E-06 45.6 27.6 248 54-349 7-288 (305)
136 KOG0315 G-protein beta subunit 97.1 0.15 3.2E-06 44.1 22.3 170 66-256 13-188 (311)
137 PTZ00421 coronin; Provisional 97.1 0.31 6.6E-06 47.7 29.1 110 93-221 76-199 (493)
138 smart00135 LY Low-density lipo 97.1 0.002 4.3E-08 39.7 5.7 37 186-222 5-41 (43)
139 PRK02888 nitrous-oxide reducta 97.1 0.29 6.4E-06 48.4 22.9 106 132-255 321-451 (635)
140 KOG0263 Transcription initiati 97.1 0.087 1.9E-06 52.1 19.1 196 93-349 452-652 (707)
141 KOG0293 WD40 repeat-containing 97.0 0.043 9.2E-07 50.5 15.6 154 48-221 266-426 (519)
142 PF13449 Phytase-like: Esteras 97.0 0.12 2.7E-06 47.6 19.3 156 51-210 19-234 (326)
143 PF14870 PSII_BNR: Photosynthe 97.0 0.24 5.3E-06 44.9 23.7 177 55-255 65-252 (302)
144 KOG2048 WD40 repeat protein [G 97.0 0.33 7E-06 47.6 21.9 149 52-220 26-184 (691)
145 PF05787 DUF839: Bacterial pro 97.0 0.15 3.2E-06 50.1 20.4 161 44-212 237-457 (524)
146 KOG0278 Serine/threonine kinas 97.0 0.022 4.8E-07 49.0 12.7 174 56-255 105-287 (334)
147 TIGR03075 PQQ_enz_alc_DH PQQ-d 97.0 0.43 9.3E-06 47.1 26.5 44 291-336 480-523 (527)
148 KOG1274 WD40 repeat protein [G 97.0 0.29 6.3E-06 49.5 22.0 171 63-254 66-251 (933)
149 COG3211 PhoX Predicted phospha 97.0 0.0079 1.7E-07 57.7 10.8 153 44-208 409-572 (616)
150 KOG0285 Pleiotropic regulator 97.0 0.19 4.1E-06 45.6 18.6 157 44-221 144-308 (460)
151 PTZ00420 coronin; Provisional 97.0 0.48 1E-05 47.0 27.1 110 93-221 75-198 (568)
152 KOG0303 Actin-binding protein 96.9 0.032 6.9E-07 51.1 13.8 160 48-222 128-296 (472)
153 KOG0273 Beta-transducin family 96.9 0.4 8.6E-06 45.1 23.2 236 56-346 281-523 (524)
154 KOG0643 Translation initiation 96.9 0.26 5.7E-06 43.0 21.0 160 42-220 41-220 (327)
155 KOG4649 PQQ (pyrrolo-quinoline 96.9 0.27 5.9E-06 42.9 21.1 147 54-221 15-166 (354)
156 KOG0265 U5 snRNP-specific prot 96.9 0.3 6.5E-06 43.3 19.9 164 55-221 51-247 (338)
157 PHA02713 hypothetical protein; 96.7 0.59 1.3E-05 46.6 22.2 119 74-208 273-405 (557)
158 COG0823 TolB Periplasmic compo 96.7 0.47 1E-05 45.4 20.6 129 74-219 219-357 (425)
159 PF06433 Me-amine-dh_H: Methyl 96.7 0.2 4.4E-06 45.7 16.9 107 169-312 16-137 (342)
160 KOG0272 U4/U6 small nuclear ri 96.7 0.067 1.4E-06 49.4 13.7 187 49-256 259-451 (459)
161 PF14583 Pectate_lyase22: Olig 96.6 0.16 3.4E-06 47.3 16.2 160 169-344 59-232 (386)
162 PF13449 Phytase-like: Esteras 96.6 0.12 2.6E-06 47.8 15.8 110 133-254 86-233 (326)
163 PF02333 Phytase: Phytase; In 96.6 0.54 1.2E-05 43.9 19.7 138 63-221 67-238 (381)
164 PF08662 eIF2A: Eukaryotic tra 96.6 0.37 8E-06 40.8 17.5 128 103-255 30-163 (194)
165 COG3204 Uncharacterized protei 96.6 0.49 1.1E-05 42.1 21.0 195 94-346 87-312 (316)
166 KOG4441 Proteins containing BT 96.6 0.36 7.8E-06 48.1 19.5 179 55-254 326-530 (571)
167 COG3211 PhoX Predicted phospha 96.5 0.027 5.9E-07 54.1 10.9 114 191-335 418-573 (616)
168 KOG0296 Angio-associated migra 96.5 0.6 1.3E-05 42.5 22.8 235 50-346 147-398 (399)
169 KOG0286 G-protein beta subunit 96.5 0.55 1.2E-05 41.6 26.8 186 45-253 49-247 (343)
170 KOG0319 WD40-repeat-containing 96.4 0.16 3.4E-06 50.2 15.4 151 52-219 63-221 (775)
171 KOG0772 Uncharacterized conser 96.4 0.13 2.8E-06 48.8 14.2 185 51-256 167-385 (641)
172 PLN00033 photosystem II stabil 96.4 0.91 2E-05 43.0 21.2 136 99-255 244-390 (398)
173 KOG0319 WD40-repeat-containing 96.4 0.39 8.4E-06 47.5 17.8 93 56-149 110-210 (775)
174 PF01436 NHL: NHL repeat; Int 96.3 0.0096 2.1E-07 33.2 3.9 20 132-151 2-21 (28)
175 KOG2919 Guanine nucleotide-bin 96.2 0.49 1.1E-05 42.5 16.1 141 64-221 123-282 (406)
176 KOG0283 WD40 repeat-containing 96.2 0.11 2.3E-06 51.8 13.4 149 52-221 410-577 (712)
177 KOG0640 mRNA cleavage stimulat 96.2 0.15 3.2E-06 45.5 12.7 135 98-256 117-282 (430)
178 KOG0646 WD40 repeat protein [G 96.1 0.66 1.4E-05 43.5 17.2 148 52-220 81-247 (476)
179 PF14870 PSII_BNR: Photosynthe 96.1 1.1 2.3E-05 40.8 23.6 178 52-255 17-206 (302)
180 KOG0301 Phospholipase A2-activ 96.0 1.4 3E-05 43.6 19.5 168 62-256 70-240 (745)
181 KOG0282 mRNA splicing factor [ 96.0 0.12 2.6E-06 48.5 11.9 138 98-255 219-362 (503)
182 KOG2139 WD40 repeat protein [G 96.0 1.2 2.6E-05 40.8 23.9 147 92-257 194-367 (445)
183 KOG0285 Pleiotropic regulator 96.0 1.2 2.6E-05 40.6 19.7 150 49-219 191-347 (460)
184 KOG1273 WD40 repeat protein [G 96.0 1.1 2.5E-05 40.1 18.3 56 95-151 26-85 (405)
185 KOG0299 U3 snoRNP-associated p 95.9 0.5 1.1E-05 44.2 15.3 202 51-255 202-446 (479)
186 PLN00033 photosystem II stabil 95.9 1.6 3.5E-05 41.4 25.2 110 192-343 283-396 (398)
187 PHA02713 hypothetical protein; 95.8 0.99 2.1E-05 45.0 18.4 185 63-254 303-520 (557)
188 KOG0639 Transducin-like enhanc 95.8 0.41 8.9E-06 45.4 14.2 172 59-255 473-653 (705)
189 KOG0639 Transducin-like enhanc 95.7 0.3 6.4E-06 46.3 13.0 143 59-221 427-582 (705)
190 KOG0771 Prolactin regulatory e 95.5 0.89 1.9E-05 42.1 15.3 185 55-253 148-342 (398)
191 KOG0650 WD40 repeat nucleolar 95.5 1.2 2.5E-05 43.4 16.6 83 23-106 369-454 (733)
192 TIGR03074 PQQ_membr_DH membran 95.5 3.2 7E-05 42.9 21.1 60 62-123 193-280 (764)
193 KOG0772 Uncharacterized conser 95.5 2.1 4.5E-05 41.0 17.8 184 52-255 215-429 (641)
194 PRK13616 lipoprotein LpqB; Pro 95.4 3.2 7E-05 41.6 23.5 225 65-344 322-565 (591)
195 COG4247 Phy 3-phytase (myo-ino 95.4 1.7 3.6E-05 38.1 17.0 82 171-255 127-225 (364)
196 KOG0296 Angio-associated migra 95.4 2.2 4.7E-05 39.1 24.7 147 56-221 69-221 (399)
197 KOG1539 WD repeat protein [Gen 95.3 3.5 7.6E-05 41.8 19.5 140 94-255 450-596 (910)
198 KOG0293 WD40 repeat-containing 95.3 0.42 9.1E-06 44.3 12.3 99 51-150 312-414 (519)
199 KOG0310 Conserved WD40 repeat- 95.3 2.7 5.9E-05 39.8 19.6 140 94-255 70-216 (487)
200 COG1520 FOG: WD40-like repeat 95.2 2.7 5.9E-05 39.4 19.1 99 101-220 65-171 (370)
201 KOG0284 Polyadenylation factor 95.2 0.21 4.6E-06 46.0 10.2 147 55-219 100-251 (464)
202 PF07494 Reg_prop: Two compone 95.2 0.026 5.6E-07 30.2 2.7 16 239-254 8-23 (24)
203 KOG0283 WD40 repeat-containing 95.2 2.4 5.3E-05 42.5 18.1 184 49-255 367-566 (712)
204 PF06433 Me-amine-dh_H: Methyl 95.1 0.57 1.2E-05 42.9 12.7 112 62-191 194-333 (342)
205 KOG0268 Sof1-like rRNA process 95.1 0.96 2.1E-05 41.3 13.7 182 48-255 63-249 (433)
206 KOG0292 Vesicle coat complex C 95.0 4.9 0.00011 41.3 20.6 251 53-350 11-284 (1202)
207 KOG4441 Proteins containing BT 95.0 4 8.8E-05 40.8 19.5 205 73-333 301-528 (571)
208 PF14269 Arylsulfotran_2: Aryl 94.9 2.9 6.4E-05 38.0 21.6 39 132-187 144-182 (299)
209 KOG3881 Uncharacterized conser 94.8 2.8 6.1E-05 38.7 16.1 94 161-257 217-312 (412)
210 PHA02790 Kelch-like protein; P 94.8 4.4 9.6E-05 39.6 20.4 168 63-254 271-454 (480)
211 KOG0645 WD40 repeat protein [G 94.7 2.8 6.1E-05 36.9 17.8 148 44-208 54-214 (312)
212 KOG0316 Conserved WD40 repeat- 94.7 2.6 5.7E-05 36.4 16.7 117 98-232 22-143 (307)
213 KOG0288 WD40 repeat protein Ti 94.6 1 2.2E-05 41.8 12.8 125 66-208 315-450 (459)
214 KOG0649 WD40 repeat protein [G 94.5 2.9 6.3E-05 36.3 16.3 71 51-123 114-188 (325)
215 COG3490 Uncharacterized protei 94.5 2.7 5.9E-05 37.4 14.7 117 196-335 120-244 (366)
216 KOG0646 WD40 repeat protein [G 94.5 2.8 6E-05 39.5 15.6 164 49-221 121-308 (476)
217 PF14517 Tachylectin: Tachylec 94.5 0.21 4.5E-06 43.1 7.8 119 41-179 70-207 (229)
218 KOG3881 Uncharacterized conser 94.4 0.6 1.3E-05 42.9 10.9 97 53-150 204-309 (412)
219 KOG1538 Uncharacterized conser 94.4 5.9 0.00013 39.3 21.1 61 52-114 13-74 (1081)
220 KOG1407 WD40 repeat protein [F 94.4 2.3 5E-05 37.2 13.8 94 56-150 111-208 (313)
221 KOG4378 Nuclear protein COP1 [ 94.3 1.6 3.5E-05 41.6 13.6 83 169-255 186-270 (673)
222 KOG0268 Sof1-like rRNA process 94.3 0.23 5E-06 45.2 7.9 144 55-217 191-342 (433)
223 KOG0973 Histone transcription 94.3 1.1 2.5E-05 46.1 13.7 97 52-149 130-237 (942)
224 KOG2110 Uncharacterized conser 94.3 4.1 8.8E-05 37.4 15.7 137 171-349 107-251 (391)
225 KOG0973 Histone transcription 94.2 1.7 3.6E-05 45.0 14.7 100 51-151 69-191 (942)
226 KOG0640 mRNA cleavage stimulat 94.2 2.6 5.7E-05 37.8 14.1 188 52-255 217-416 (430)
227 PHA03098 kelch-like protein; P 94.1 6.7 0.00014 38.8 20.8 134 74-221 312-465 (534)
228 PF08553 VID27: VID27 cytoplas 94.0 2.2 4.8E-05 43.9 15.1 150 49-219 478-646 (794)
229 KOG0308 Conserved WD40 repeat- 93.9 3.4 7.4E-05 40.7 15.4 149 54-221 120-286 (735)
230 TIGR02276 beta_rpt_yvtn 40-res 93.9 0.31 6.7E-06 29.5 5.9 40 142-198 2-42 (42)
231 KOG0292 Vesicle coat complex C 93.9 9 0.00019 39.5 21.3 131 49-209 248-385 (1202)
232 COG0823 TolB Periplasmic compo 93.8 6.5 0.00014 37.7 20.9 120 116-254 220-344 (425)
233 PF14517 Tachylectin: Tachylec 93.8 3.7 8E-05 35.5 14.0 155 41-219 24-205 (229)
234 PHA02790 Kelch-like protein; P 93.6 3.4 7.3E-05 40.4 15.5 123 63-208 318-453 (480)
235 KOG2048 WD40 repeat protein [G 93.6 8.3 0.00018 38.2 25.1 150 49-219 67-232 (691)
236 TIGR02276 beta_rpt_yvtn 40-res 93.5 0.43 9.3E-06 28.9 6.0 41 61-102 1-42 (42)
237 KOG2321 WD40 repeat protein [G 93.4 5.2 0.00011 38.9 15.5 105 99-221 139-259 (703)
238 KOG0288 WD40 repeat protein Ti 93.4 6.6 0.00014 36.6 15.6 195 55-253 179-405 (459)
239 PF00058 Ldl_recept_b: Low-den 93.2 0.44 9.6E-06 29.3 5.6 40 143-199 1-42 (42)
240 PF07494 Reg_prop: Two compone 93.2 0.11 2.4E-06 27.7 2.5 18 94-112 6-23 (24)
241 KOG0295 WD40 repeat-containing 93.2 6.9 0.00015 35.9 19.2 53 58-111 115-168 (406)
242 TIGR03074 PQQ_membr_DH membran 92.9 13 0.00029 38.5 19.3 123 63-186 260-430 (764)
243 KOG1036 Mitotic spindle checkp 92.7 7.2 0.00016 35.0 17.8 147 53-221 15-164 (323)
244 KOG0299 U3 snoRNP-associated p 92.6 5.3 0.00012 37.7 14.1 136 68-219 303-455 (479)
245 KOG2139 WD40 repeat protein [G 92.5 4 8.7E-05 37.5 12.8 96 54-150 198-300 (445)
246 KOG2096 WD40 repeat protein [G 92.5 7.9 0.00017 35.0 20.0 152 49-219 84-257 (420)
247 KOG2321 WD40 repeat protein [G 92.5 5.9 0.00013 38.6 14.4 110 55-183 137-263 (703)
248 KOG0273 Beta-transducin family 92.4 10 0.00022 36.1 21.3 140 94-256 237-380 (524)
249 PF00930 DPPIV_N: Dipeptidyl p 92.3 6.4 0.00014 36.7 14.8 141 56-209 188-347 (353)
250 KOG1036 Mitotic spindle checkp 92.2 8.3 0.00018 34.6 17.0 105 98-221 18-125 (323)
251 TIGR03118 PEPCTERM_chp_1 conse 92.0 4.4 9.5E-05 36.6 12.3 133 188-345 21-169 (336)
252 KOG1407 WD40 repeat protein [F 91.9 8.3 0.00018 33.9 21.5 180 49-255 18-209 (313)
253 PF00058 Ldl_recept_b: Low-den 91.6 0.76 1.6E-05 28.2 5.3 39 203-244 2-41 (42)
254 KOG2110 Uncharacterized conser 91.6 11 0.00024 34.7 17.4 138 63-220 97-248 (391)
255 PF02897 Peptidase_S9_N: Proly 91.5 13 0.00028 35.3 21.0 142 171-350 151-313 (414)
256 KOG0310 Conserved WD40 repeat- 91.4 13 0.00029 35.3 20.6 143 56-220 73-225 (487)
257 PF05694 SBP56: 56kDa selenium 91.3 14 0.0003 35.3 19.7 193 62-255 86-332 (461)
258 KOG4547 WD40 repeat-containing 91.1 8.3 0.00018 37.5 14.0 111 165-316 75-187 (541)
259 KOG0281 Beta-TrCP (transducin 91.1 1.9 4.2E-05 39.2 9.2 136 63-221 247-389 (499)
260 KOG0294 WD40 repeat-containing 91.0 12 0.00025 33.9 20.1 133 98-255 48-188 (362)
261 KOG0306 WD40-repeat-containing 91.0 8.1 0.00018 38.9 14.0 149 53-219 510-663 (888)
262 PHA03098 kelch-like protein; P 91.0 11 0.00024 37.2 15.7 113 63-186 342-472 (534)
263 KOG4378 Nuclear protein COP1 [ 90.6 17 0.00036 35.0 19.9 116 195-353 170-287 (673)
264 KOG0284 Polyadenylation factor 90.5 3.2 6.9E-05 38.6 10.2 147 55-220 142-294 (464)
265 KOG0301 Phospholipase A2-activ 90.5 5.5 0.00012 39.6 12.3 99 48-148 176-276 (745)
266 KOG0274 Cdc4 and related F-box 90.4 20 0.00043 35.6 23.8 153 47-222 245-402 (537)
267 KOG2096 WD40 repeat protein [G 90.4 14 0.00029 33.6 15.9 61 190-255 332-393 (420)
268 KOG0313 Microtubule binding pr 90.2 15 0.00033 34.0 14.6 155 49-221 191-377 (423)
269 KOG4328 WD40 protein [Function 90.0 18 0.00039 34.4 18.6 148 54-219 237-398 (498)
270 KOG0645 WD40 repeat protein [G 89.9 13 0.00029 32.8 24.5 150 53-220 16-180 (312)
271 PF07172 GRP: Glycine rich pro 89.9 0.28 6E-06 36.2 2.5 20 1-20 1-20 (95)
272 KOG2919 Guanine nucleotide-bin 89.6 12 0.00027 33.9 12.8 135 171-348 134-283 (406)
273 KOG1272 WD40-repeat-containing 89.6 1.9 4.2E-05 40.7 8.2 183 52-257 130-315 (545)
274 KOG0265 U5 snRNP-specific prot 89.4 16 0.00034 32.9 16.3 111 93-221 48-164 (338)
275 PF01731 Arylesterase: Arylest 89.3 1.1 2.5E-05 32.3 5.2 37 115-151 37-74 (86)
276 KOG1524 WD40 repeat-containing 89.2 22 0.00049 34.5 14.9 96 53-150 65-165 (737)
277 KOG0295 WD40 repeat-containing 88.7 20 0.00043 33.1 14.7 164 52-222 194-366 (406)
278 KOG1215 Low-density lipoprotei 88.0 39 0.00086 35.8 17.9 154 52-222 437-600 (877)
279 KOG0643 Translation initiation 87.9 19 0.00041 31.9 22.2 181 58-255 17-210 (327)
280 KOG1963 WD40 repeat protein [G 87.7 35 0.00077 34.9 20.3 144 54-219 163-321 (792)
281 KOG0313 Microtubule binding pr 87.4 24 0.00053 32.7 14.6 101 48-150 257-365 (423)
282 KOG3914 WD repeat protein WDR4 87.3 19 0.00041 33.5 12.8 150 53-221 64-224 (390)
283 PF13570 PQQ_3: PQQ-like domai 87.3 1.3 2.7E-05 26.7 3.8 26 55-82 15-40 (40)
284 PF05935 Arylsulfotrans: Aryls 87.2 22 0.00048 34.7 14.4 109 57-186 153-309 (477)
285 PF14339 DUF4394: Domain of un 86.8 20 0.00044 31.2 17.5 71 52-123 27-105 (236)
286 KOG1445 Tumor-specific antigen 86.8 4 8.7E-05 40.2 8.6 142 65-220 692-844 (1012)
287 PF05694 SBP56: 56kDa selenium 86.6 2.6 5.6E-05 40.0 7.1 64 192-255 314-394 (461)
288 KOG2394 WD40 protein DMR-N9 [G 85.8 26 0.00056 34.1 13.2 70 132-219 291-361 (636)
289 KOG1408 WD40 repeat protein [F 85.6 44 0.00095 33.9 15.0 189 51-255 459-660 (1080)
290 KOG1538 Uncharacterized conser 85.5 24 0.00052 35.3 13.1 56 94-151 14-73 (1081)
291 smart00564 PQQ beta-propeller 85.3 1.8 4E-05 24.4 3.7 25 62-86 5-29 (33)
292 KOG0281 Beta-TrCP (transducin 84.8 12 0.00027 34.2 10.2 171 53-255 199-378 (499)
293 KOG4547 WD40 repeat-containing 84.5 42 0.00092 32.8 17.9 115 66-200 73-195 (541)
294 KOG0306 WD40-repeat-containing 83.6 55 0.0012 33.4 17.7 166 66-254 80-263 (888)
295 PRK14131 N-acetylneuraminic ac 83.5 40 0.00086 31.7 17.2 88 63-150 38-147 (376)
296 KOG0647 mRNA export protein (c 83.5 34 0.00074 30.9 16.7 36 54-89 75-110 (347)
297 KOG0276 Vesicle coat complex C 83.1 52 0.0011 32.8 20.2 26 190-215 352-377 (794)
298 PF06739 SBBP: Beta-propeller 82.8 1.1 2.4E-05 26.8 2.0 20 132-151 13-32 (38)
299 KOG1272 WD40-repeat-containing 82.7 5 0.00011 38.0 7.1 80 169-254 272-353 (545)
300 PF01011 PQQ: PQQ enzyme repea 82.6 2.4 5.2E-05 25.2 3.5 23 64-86 1-23 (38)
301 KOG0308 Conserved WD40 repeat- 82.6 23 0.0005 35.2 11.7 68 52-121 172-241 (735)
302 KOG0303 Actin-binding protein 82.3 44 0.00095 31.3 17.0 52 169-221 153-204 (472)
303 PF02897 Peptidase_S9_N: Proly 82.2 46 0.001 31.5 20.6 149 98-255 128-296 (414)
304 smart00135 LY Low-density lipo 81.8 6.4 0.00014 23.4 5.4 31 50-80 7-38 (43)
305 KOG1009 Chromatin assembly com 81.8 22 0.00048 33.2 10.7 91 94-202 67-178 (434)
306 PF00930 DPPIV_N: Dipeptidyl p 81.6 45 0.00098 31.0 23.5 57 292-350 259-320 (353)
307 TIGR03548 mutarot_permut cycli 81.4 43 0.00093 30.6 17.0 110 63-187 72-203 (323)
308 PF05935 Arylsulfotrans: Aryls 81.3 56 0.0012 31.9 16.8 141 72-220 127-301 (477)
309 KOG2111 Uncharacterized conser 81.3 42 0.00092 30.5 18.0 72 132-221 182-257 (346)
310 COG3823 Glutamine cyclotransfe 81.2 34 0.00073 29.3 12.3 100 132-255 46-149 (262)
311 KOG0307 Vesicle coat complex C 81.2 14 0.00029 39.0 10.1 132 64-213 81-230 (1049)
312 PF11768 DUF3312: Protein of u 80.7 11 0.00025 36.7 9.0 72 45-120 255-327 (545)
313 KOG1445 Tumor-specific antigen 78.7 75 0.0016 31.8 14.0 91 29-121 105-199 (1012)
314 KOG0641 WD40 repeat protein [G 78.6 43 0.00093 28.9 15.0 27 192-219 92-118 (350)
315 KOG0305 Anaphase promoting com 78.2 70 0.0015 31.2 21.3 180 52-255 218-407 (484)
316 KOG0305 Anaphase promoting com 77.1 76 0.0016 31.0 20.4 136 62-219 187-330 (484)
317 KOG0276 Vesicle coat complex C 75.1 95 0.0021 31.1 14.7 97 55-151 17-117 (794)
318 COG4247 Phy 3-phytase (myo-ino 74.3 62 0.0013 28.6 13.5 23 98-120 209-232 (364)
319 PF11725 AvrE: Pathogenicity f 74.3 27 0.00058 38.8 10.2 127 71-219 380-515 (1774)
320 KOG1963 WD40 repeat protein [G 73.6 1.2E+02 0.0025 31.4 21.2 91 55-149 209-310 (792)
321 KOG0771 Prolactin regulatory e 73.4 82 0.0018 29.6 12.8 49 169-219 165-214 (398)
322 KOG0650 WD40 repeat nucleolar 72.3 37 0.00079 33.6 9.7 98 50-149 520-626 (733)
323 KOG2395 Protein involved in va 71.9 66 0.0014 31.5 11.2 126 72-219 355-499 (644)
324 PF14269 Arylsulfotran_2: Aryl 70.9 83 0.0018 28.6 12.9 28 95-123 146-175 (299)
325 KOG1408 WD40 repeat protein [F 70.7 44 0.00096 33.9 10.1 69 54-123 599-673 (1080)
326 KOG2394 WD40 protein DMR-N9 [G 70.6 12 0.00025 36.4 6.0 87 53-141 292-384 (636)
327 PLN02153 epithiospecifier prot 70.3 90 0.0019 28.7 23.0 108 73-186 50-175 (341)
328 PF15416 DUF4623: Domain of un 68.8 63 0.0014 29.7 9.9 62 196-257 138-204 (442)
329 KOG1188 WD40 repeat protein [G 66.4 1.1E+02 0.0024 28.2 12.9 145 168-349 48-199 (376)
330 TIGR03548 mutarot_permut cycli 66.3 1E+02 0.0023 28.0 15.4 87 63-150 123-231 (323)
331 PF02191 OLF: Olfactomedin-lik 66.2 95 0.002 27.4 18.2 146 51-219 69-246 (250)
332 KOG0918 Selenium-binding prote 65.6 30 0.00065 32.5 7.4 44 132-177 389-433 (476)
333 KOG0321 WD40 repeat-containing 65.4 1.6E+02 0.0034 29.7 16.2 61 195-255 223-292 (720)
334 PF00400 WD40: WD domain, G-be 65.2 21 0.00046 20.5 4.6 31 49-79 9-39 (39)
335 PRK13616 lipoprotein LpqB; Pro 64.8 1.6E+02 0.0035 29.7 19.2 150 51-223 349-530 (591)
336 PF10647 Gmad1: Lipoprotein Lp 63.6 1.1E+02 0.0023 27.1 19.7 151 53-221 25-198 (253)
337 KOG2315 Predicted translation 63.2 1.6E+02 0.0034 29.0 14.5 119 171-310 252-373 (566)
338 PF08553 VID27: VID27 cytoplas 63.1 20 0.00043 37.2 6.4 65 55-120 581-645 (794)
339 PLN02193 nitrile-specifier pro 63.0 1.5E+02 0.0033 28.8 18.2 110 63-187 228-360 (470)
340 PF09826 Beta_propel: Beta pro 62.8 1.7E+02 0.0036 29.1 26.5 56 291-349 302-358 (521)
341 COG5276 Uncharacterized conser 62.4 1.2E+02 0.0027 27.5 21.9 97 103-222 95-201 (370)
342 KOG1009 Chromatin assembly com 62.3 49 0.0011 31.0 8.1 55 190-248 124-178 (434)
343 KOG0267 Microtubule severing p 62.2 56 0.0012 33.1 9.0 94 52-146 71-169 (825)
344 TIGR03547 muta_rot_YjhT mutatr 62.1 1.3E+02 0.0028 27.7 23.1 87 63-150 17-126 (346)
345 KOG0307 Vesicle coat complex C 61.3 23 0.0005 37.4 6.5 148 56-221 166-328 (1049)
346 PF10731 Anophelin: Thrombin i 60.6 10 0.00023 24.9 2.6 17 1-18 1-17 (65)
347 COG4590 ABC-type uncharacteriz 60.3 1E+02 0.0022 29.8 9.9 147 193-352 224-392 (733)
348 KOG3621 WD40 repeat-containing 58.4 2.2E+02 0.0047 29.0 19.1 90 62-152 44-146 (726)
349 KOG1517 Guanine nucleotide bin 57.2 2.8E+02 0.0061 30.0 19.3 230 62-348 1122-1383(1387)
350 KOG0918 Selenium-binding prote 57.0 32 0.00069 32.3 6.0 28 194-221 316-343 (476)
351 KOG1230 Protein containing rep 55.7 1.9E+02 0.0042 27.6 11.5 137 63-208 85-250 (521)
352 PF08138 Sex_peptide: Sex pept 55.1 7.2 0.00016 25.0 1.1 38 1-38 1-38 (56)
353 smart00284 OLF Olfactomedin-li 55.1 1.5E+02 0.0033 26.2 18.4 146 51-219 74-251 (255)
354 KOG1063 RNA polymerase II elon 54.8 2.5E+02 0.0054 28.6 18.4 62 193-255 320-381 (764)
355 KOG0269 WD40 repeat-containing 54.7 1.3E+02 0.0029 30.8 10.2 97 64-178 101-207 (839)
356 KOG0264 Nucleosome remodeling 54.5 2E+02 0.0043 27.4 13.1 101 49-150 225-336 (422)
357 KOG0264 Nucleosome remodeling 53.3 2.1E+02 0.0045 27.3 13.2 147 56-220 182-347 (422)
358 KOG1034 Transcriptional repres 53.3 47 0.001 30.4 6.3 56 163-219 322-382 (385)
359 KOG0641 WD40 repeat protein [G 53.1 1.5E+02 0.0033 25.6 23.2 63 51-115 32-111 (350)
360 KOG1215 Low-density lipoprotei 53.1 3.1E+02 0.0067 29.2 21.3 136 98-253 441-585 (877)
361 KOG4227 WD40 repeat protein [G 52.7 2.1E+02 0.0045 27.0 20.5 151 51-220 56-225 (609)
362 KOG4328 WD40 protein [Function 52.4 2.2E+02 0.0048 27.3 11.1 149 52-220 187-353 (498)
363 PF11768 DUF3312: Protein of u 51.4 98 0.0021 30.5 8.6 51 168-220 279-329 (545)
364 KOG4227 WD40 repeat protein [G 51.2 2.2E+02 0.0047 26.9 11.5 64 56-120 110-177 (609)
365 PRK10115 protease 2; Provision 50.7 3E+02 0.0065 28.4 18.6 49 171-221 154-208 (686)
366 PF13964 Kelch_6: Kelch motif 50.1 42 0.00092 20.8 4.3 37 139-186 8-44 (50)
367 KOG2314 Translation initiation 50.0 2.7E+02 0.0058 27.7 11.0 80 170-255 472-557 (698)
368 KOG0322 G-protein beta subunit 49.5 1.9E+02 0.0042 25.8 9.3 69 132-218 252-321 (323)
369 KOG4497 Uncharacterized conser 47.3 2E+02 0.0043 26.6 9.3 61 132-209 92-153 (447)
370 PF14779 BBS1: Ciliary BBSome 46.4 71 0.0015 28.3 6.4 55 64-119 196-255 (257)
371 KOG2395 Protein involved in va 46.2 90 0.002 30.6 7.3 82 66-149 397-489 (644)
372 KOG0649 WD40 repeat protein [G 45.9 2.1E+02 0.0046 25.2 20.7 39 132-188 115-154 (325)
373 PLN02193 nitrile-specifier pro 44.4 3.1E+02 0.0067 26.7 23.8 52 170-221 244-303 (470)
374 KOG0274 Cdc4 and related F-box 44.2 3.4E+02 0.0073 27.1 20.6 157 127-348 245-402 (537)
375 PF07676 PD40: WD40-like Beta 43.8 64 0.0014 18.7 4.2 17 194-210 13-29 (39)
376 KOG1517 Guanine nucleotide bin 43.6 4.6E+02 0.01 28.5 13.9 148 62-228 1176-1341(1387)
377 KOG0269 WD40 repeat-containing 43.2 3E+02 0.0065 28.4 10.6 86 169-257 109-199 (839)
378 KOG3914 WD repeat protein WDR4 41.9 2.8E+02 0.006 26.1 9.6 91 52-143 108-206 (390)
379 KOG2315 Predicted translation 41.5 3.6E+02 0.0078 26.6 15.5 127 74-221 252-391 (566)
380 KOG2111 Uncharacterized conser 41.3 2.8E+02 0.0062 25.4 23.0 59 293-353 203-263 (346)
381 PF07569 Hira: TUP1-like enhan 41.0 2.3E+02 0.0051 24.3 8.9 33 52-85 12-44 (219)
382 KOG0277 Peroxisomal targeting 40.2 2.7E+02 0.0058 24.8 12.5 25 197-221 198-222 (311)
383 PF05436 MF_alpha_N: Mating fa 39.8 86 0.0019 22.6 4.8 15 1-15 1-15 (86)
384 KOG0647 mRNA export protein (c 39.7 3E+02 0.0064 25.1 21.2 182 52-257 28-221 (347)
385 PF14339 DUF4394: Domain of un 39.6 2.6E+02 0.0057 24.5 11.8 68 98-183 31-108 (236)
386 PF11857 DUF3377: Domain of un 39.0 36 0.00079 23.6 2.7 23 4-26 37-59 (74)
387 PF15390 DUF4613: Domain of un 38.4 2.7E+02 0.0058 27.9 9.3 69 186-255 335-404 (671)
388 KOG1645 RING-finger-containing 37.3 2.2E+02 0.0049 26.9 8.2 73 131-221 193-267 (463)
389 KOG0642 Cell-cycle nuclear pro 37.3 3.7E+02 0.008 26.6 10.0 37 49-85 394-430 (577)
390 PF03178 CPSF_A: CPSF A subuni 37.1 3.2E+02 0.0069 24.8 11.3 110 52-181 89-207 (321)
391 PLN02153 epithiospecifier prot 35.8 3.5E+02 0.0075 24.8 15.4 52 170-221 50-110 (341)
392 PF10647 Gmad1: Lipoprotein Lp 34.9 3.2E+02 0.0068 24.0 23.0 144 94-255 25-185 (253)
393 KOG1310 WD40 repeat protein [G 34.6 2.9E+02 0.0063 27.4 8.8 105 44-149 43-167 (758)
394 KOG3621 WD40 repeat-containing 34.4 1.8E+02 0.004 29.5 7.7 67 52-121 125-197 (726)
395 PF14157 YmzC: YmzC-like prote 33.5 65 0.0014 21.6 3.1 17 170-186 41-57 (63)
396 PF11763 DIPSY: Cell-wall adhe 32.7 2.3E+02 0.0049 21.7 10.2 21 235-255 81-101 (123)
397 KOG4497 Uncharacterized conser 31.7 4.2E+02 0.0092 24.5 8.9 76 171-251 72-149 (447)
398 PF11763 DIPSY: Cell-wall adhe 31.6 2.4E+02 0.0052 21.6 8.3 89 53-150 5-100 (123)
399 COG4993 Gcd Glucose dehydrogen 31.6 5.7E+02 0.012 26.0 21.7 91 39-129 183-300 (773)
400 COG4880 Secreted protein conta 31.5 4.8E+02 0.01 25.1 16.8 52 293-347 406-458 (603)
401 KOG1310 WD40 repeat protein [G 31.1 3.2E+02 0.0068 27.2 8.4 73 132-221 51-126 (758)
402 KOG1063 RNA polymerase II elon 30.2 6.1E+02 0.013 25.9 13.0 102 49-151 265-381 (764)
403 TIGR02608 delta_60_rpt delta-6 29.8 1.1E+02 0.0025 19.9 3.8 45 239-314 4-48 (55)
404 KOG1645 RING-finger-containing 29.3 1.7E+02 0.0037 27.7 6.2 69 51-120 193-264 (463)
405 PF08309 LVIVD: LVIVD repeat; 27.9 1.5E+02 0.0032 18.1 4.0 27 54-82 4-30 (42)
406 PF05131 Pep3_Vps18: Pep3/Vps1 27.7 3.2E+02 0.007 21.9 7.8 64 52-120 34-101 (147)
407 COG5167 VID27 Protein involved 27.7 2E+02 0.0044 28.2 6.5 80 67-148 531-620 (776)
408 KOG1034 Transcriptional repres 27.1 5.1E+02 0.011 24.0 12.3 84 169-255 114-201 (385)
409 PRK06132 hypothetical protein; 26.8 5E+02 0.011 24.4 8.9 19 52-70 58-76 (359)
410 KOG0267 Microtubule severing p 26.3 1.5E+02 0.0033 30.2 5.6 106 95-219 73-183 (825)
411 COG5276 Uncharacterized conser 25.5 5.3E+02 0.011 23.6 22.0 57 62-120 95-154 (370)
412 KOG2114 Vacuolar assembly/sort 25.2 8.3E+02 0.018 25.8 19.4 23 58-80 30-52 (933)
413 KOG0300 WD40 repeat-containing 24.7 5.5E+02 0.012 23.6 13.7 141 63-223 284-431 (481)
414 PF13418 Kelch_4: Galactose ox 24.6 1.5E+02 0.0032 18.1 3.7 17 169-185 28-44 (49)
415 COG4447 Uncharacterized protei 23.5 5.6E+02 0.012 23.2 12.8 21 189-209 170-190 (339)
416 KOG0302 Ribosome Assembly prot 23.4 6.4E+02 0.014 23.8 11.4 150 52-220 210-378 (440)
417 PF12894 Apc4_WD40: Anaphase-p 22.6 2.1E+02 0.0045 17.9 4.2 28 194-222 16-43 (47)
418 COG4222 Uncharacterized protei 22.3 6.8E+02 0.015 23.8 10.0 17 192-208 202-218 (391)
419 PF15416 DUF4623: Domain of un 21.9 6.5E+02 0.014 23.4 16.0 97 115-223 157-274 (442)
420 TIGR03803 Gloeo_Verruco Gloeo_ 21.7 1.8E+02 0.0039 16.9 4.8 15 290-305 14-28 (34)
421 smart00320 WD40 WD40 repeats. 21.5 1.3E+02 0.0029 15.3 3.1 26 53-78 14-39 (40)
422 smart00284 OLF Olfactomedin-li 21.3 5.8E+02 0.013 22.6 16.3 41 169-209 93-145 (255)
423 KOG3567 Peptidylglycine alpha- 21.0 2.1E+02 0.0045 27.7 5.2 20 132-151 467-486 (501)
424 KOG0277 Peroxisomal targeting 21.0 6E+02 0.013 22.7 11.8 52 169-220 126-178 (311)
425 PF01344 Kelch_1: Kelch motif; 21.0 2E+02 0.0043 17.1 4.8 37 139-186 8-44 (47)
426 TIGR03547 muta_rot_YjhT mutatr 20.7 6.5E+02 0.014 22.9 18.7 38 74-111 86-125 (346)
No 1
>KOG1520 consensus Predicted alkaloid synthase/Surface mucin Hemomucin [General function prediction only]
Probab=100.00 E-value=5.7e-45 Score=324.07 Aligned_cols=307 Identities=35% Similarity=0.564 Sum_probs=256.7
Q ss_pred CcCccCceEecCCCCCCCceEEEeeCCC-eEEEEecCCEEEEEEcC--CC--e-----eEEeeccCCCcccCeEECCCC-
Q 018474 37 SSSMKGLTKLGEGCVNHPEDVSVVVSKG-ALYTATRDGWVKYFILH--NE--T-----LVNWKHIDSQSLLGLTTTKDG- 105 (355)
Q Consensus 37 ~~~l~~~~~~~~~~~~~p~~i~~d~~~g-~l~~~~~~g~i~~~~~~--~g--~-----~~~~~~~~~~p~~gl~~d~~g- 105 (355)
+..++..|.+..+....|+++.+. ++. ..|.+..+|.+-+.+.+ .. . .......|++|. ||+++..|
T Consensus 50 ~~~~~g~E~~~fd~~~~gp~~~v~-dg~il~~~g~~~Gwv~~~~~~~s~~~~~~~~~~~~~~e~~CGRPL-Gl~f~~~gg 127 (376)
T KOG1520|consen 50 NNHLTGPESLLFDPQGGGPYTGVV-DGRILKYTGNDDGWVKFADTKDSTNRSQCCDPGSFETEPLCGRPL-GIRFDKKGG 127 (376)
T ss_pred ccccCChhhheecccCCCceEEEE-CCceEEEeccCceEEEEEeccccccccccCCCcceecccccCCcc-eEEeccCCC
Confidence 344555555554444445555555 343 36777778877776651 11 0 112234579999 99999777
Q ss_pred CEEEEeCCCcEEEEcCCC--eEEEcCCc-----CCcccEEEccCCcEEEEeCCCCCCCccccccccccCCCCeEEEEeCC
Q 018474 106 GVILCDNEKGLLKVTEEG--VEAIVPDA-----SFTNDVIAASDGTLYFTVASTKYTPTDFYKDMAEGKPYGQLRKYDPK 178 (355)
Q Consensus 106 ~L~v~~~~~gl~~~~~~g--~~~~~~~~-----~~~~~l~~d~dG~ly~~d~~~~~~~~~~~~~~~~~~~~g~l~~~dp~ 178 (355)
+|||||...|++.++++| .+.+++.. .+.|++.++++|.+||||++++|..+++.+.++++.++|++++|||.
T Consensus 128 dL~VaDAYlGL~~V~p~g~~a~~l~~~~~G~~~kf~N~ldI~~~g~vyFTDSSsk~~~rd~~~a~l~g~~~GRl~~YD~~ 207 (376)
T KOG1520|consen 128 DLYVADAYLGLLKVGPEGGLAELLADEAEGKPFKFLNDLDIDPEGVVYFTDSSSKYDRRDFVFAALEGDPTGRLFRYDPS 207 (376)
T ss_pred eEEEEecceeeEEECCCCCcceeccccccCeeeeecCceeEcCCCeEEEeccccccchhheEEeeecCCCccceEEecCc
Confidence 899999999999999755 55555443 89999999999999999999999999999999999999999999999
Q ss_pred CCeEEEeeccccccccEEEeCCCCEEEEEeCCCCeEEEEEeCCCCCcceeEecccCCCCcCceEECCCCCEEEEeecCCc
Q 018474 179 LKETTVLHEGFYFANGIALSKNEDFVVVCESWKFRCRRYWLKGDRAGILDAFIENLPGGPDNINLAPDGSFWIGLIKMNQ 258 (355)
Q Consensus 179 ~~~~~~~~~~~~~pngi~~~~dg~~l~v~~~~~~~i~~~~~~~~~~~~~~~~~~~~~g~p~~i~~d~~G~lwv~~~~~~~ 258 (355)
+++.+++.+++.+|||+++|||+.++.+||+...||.|||+++.+.++.+.|++++||+||||..|++|++||+....++
T Consensus 208 tK~~~VLld~L~F~NGlaLS~d~sfvl~~Et~~~ri~rywi~g~k~gt~EvFa~~LPG~PDNIR~~~~G~fWVal~~~~~ 287 (376)
T KOG1520|consen 208 TKVTKVLLDGLYFPNGLALSPDGSFVLVAETTTARIKRYWIKGPKAGTSEVFAEGLPGYPDNIRRDSTGHFWVALHSKRS 287 (376)
T ss_pred ccchhhhhhcccccccccCCCCCCEEEEEeeccceeeeeEecCCccCchhhHhhcCCCCCcceeECCCCCEEEEEecccc
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred hhhHhhhcchhHHHHHHhccchhhcccCCC--CCCceEEEEEeCCCCeEEEEEECCCCCcccceeEEEEeCCEEEEeecC
Q 018474 259 TGVRAIQKCREKWELLDAYPGLISLLLPMG--SDAGARVVKVDGNDGKIIRDFNDPDATYISFVTSAAEFDGNLYLASLQ 336 (355)
Q Consensus 259 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~v~~~~~~~g~~~~~~~~~~g~~~~~~~~~~~~~g~L~v~~~~ 336 (355)
...+++.++|++|+++.++|....+++.+. ..++..|.+.|. +|++++++++++|.+...++.+.+++|+||+|+..
T Consensus 288 ~~~~~~~~~p~vr~~~~~~~~~~~~~~~~~~~~~p~~~V~~~d~-~G~il~~lhD~~g~~~~~~sev~E~dg~LyiGS~~ 366 (376)
T KOG1520|consen 288 TLWRLLMKYPWVRKFIAKLPKYMELLYFLNNGGKPHSAVKLSDE-TGKILESLHDKEGKVITLVSEVGEHDGHLYIGSLF 366 (376)
T ss_pred hHHHhhhcChHHHHHHHhhccchhhhhhhhccCCCceEEEEecC-CCcEEEEEecCCCCceEEEEEEeecCCeEEEcccC
Confidence 999999999999999999988777654432 123356666678 99999999999998777888888889999999999
Q ss_pred CCeEEEeeCC
Q 018474 337 SNFIGILPLD 346 (355)
Q Consensus 337 ~~~i~~~~~~ 346 (355)
.++|.|++|.
T Consensus 367 ~p~i~~lkl~ 376 (376)
T KOG1520|consen 367 NPYIARLKLP 376 (376)
T ss_pred cceeEEEecC
Confidence 9999999874
No 2
>PF08450 SGL: SMP-30/Gluconolaconase/LRE-like region; InterPro: IPR013658 This family describes a region that is found in proteins expressed by a variety of eukaryotic and prokaryotic species. These proteins include various enzymes, such as senescence marker protein 30 (SMP-30, Q15493 from SWISSPROT), gluconolactonase (Q01578 from SWISSPROT) and luciferin-regenerating enzyme (LRE, Q86DU5 from SWISSPROT). SMP-30 is known to hydrolyse diisopropyl phosphorofluoridate in the liver, and has been noted as having sequence similarity, in the region described in this family, with PON1 (P52430 from SWISSPROT) and LRE. ; PDB: 2GHS_A 2DG0_L 2DG1_D 2DSO_D 3E5Z_A 2IAT_A 2IAV_A 2GVV_A 3HLI_A 2GVU_A ....
Probab=99.96 E-value=1.1e-26 Score=206.12 Aligned_cols=227 Identities=27% Similarity=0.385 Sum_probs=174.1
Q ss_pred CceEEEeeCCCeEEEEe-cCCEEEEEEcCCCeeEEeeccCCCcccCeEEC-CCCCEEEEeCCCcEEEEc-CCC-eEEEcC
Q 018474 54 PEDVSVVVSKGALYTAT-RDGWVKYFILHNETLVNWKHIDSQSLLGLTTT-KDGGVILCDNEKGLLKVT-EEG-VEAIVP 129 (355)
Q Consensus 54 p~~i~~d~~~g~l~~~~-~~g~i~~~~~~~g~~~~~~~~~~~p~~gl~~d-~~g~L~v~~~~~gl~~~~-~~g-~~~~~~ 129 (355)
||++++++.++.||+.. .+++|+++++.+++...+.... |. |++++ ++|+||+++. .++..++ .++ ++.+..
T Consensus 2 ~Egp~~d~~~g~l~~~D~~~~~i~~~~~~~~~~~~~~~~~--~~-G~~~~~~~g~l~v~~~-~~~~~~d~~~g~~~~~~~ 77 (246)
T PF08450_consen 2 GEGPVWDPRDGRLYWVDIPGGRIYRVDPDTGEVEVIDLPG--PN-GMAFDRPDGRLYVADS-GGIAVVDPDTGKVTVLAD 77 (246)
T ss_dssp EEEEEEETTTTEEEEEETTTTEEEEEETTTTEEEEEESSS--EE-EEEEECTTSEEEEEET-TCEEEEETTTTEEEEEEE
T ss_pred CcceEEECCCCEEEEEEcCCCEEEEEECCCCeEEEEecCC--Cc-eEEEEccCCEEEEEEc-CceEEEecCCCcEEEEee
Confidence 79999996477777655 5899999999888776654433 88 99998 8899999985 4677778 467 555433
Q ss_pred ------CcCCcccEEEccCCcEEEEeCCCCCCCccccccccccCCCCeEEEEeCCCCeEEEeeccccccccEEEeCCCCE
Q 018474 130 ------DASFTNDVIAASDGTLYFTVASTKYTPTDFYKDMAEGKPYGQLRKYDPKLKETTVLHEGFYFANGIALSKNEDF 203 (355)
Q Consensus 130 ------~~~~~~~l~~d~dG~ly~~d~~~~~~~~~~~~~~~~~~~~g~l~~~dp~~~~~~~~~~~~~~pngi~~~~dg~~ 203 (355)
....||++++|++|+||++++...... ....|++|+++++ ++.+.+..++..||||++++|++.
T Consensus 78 ~~~~~~~~~~~ND~~vd~~G~ly~t~~~~~~~~---------~~~~g~v~~~~~~-~~~~~~~~~~~~pNGi~~s~dg~~ 147 (246)
T PF08450_consen 78 LPDGGVPFNRPNDVAVDPDGNLYVTDSGGGGAS---------GIDPGSVYRIDPD-GKVTVVADGLGFPNGIAFSPDGKT 147 (246)
T ss_dssp EETTCSCTEEEEEEEE-TTS-EEEEEECCBCTT---------CGGSEEEEEEETT-SEEEEEEEEESSEEEEEEETTSSE
T ss_pred ccCCCcccCCCceEEEcCCCCEEEEecCCCccc---------cccccceEEECCC-CeEEEEecCcccccceEECCcchh
Confidence 238999999999999999987521100 0001789999998 888888888999999999999999
Q ss_pred EEEEeCCCCeEEEEEeCCC--CCcceeEecc--cCCCCcCceEECCCCCEEEEeecCCchhhHhhhcchhHHHHHHhccc
Q 018474 204 VVVCESWKFRCRRYWLKGD--RAGILDAFIE--NLPGGPDNINLAPDGSFWIGLIKMNQTGVRAIQKCREKWELLDAYPG 279 (355)
Q Consensus 204 l~v~~~~~~~i~~~~~~~~--~~~~~~~~~~--~~~g~p~~i~~d~~G~lwv~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 279 (355)
||++++..++|++|+++.. .....+.+.+ ...+.|||+++|++|+|||+....
T Consensus 148 lyv~ds~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~g~pDG~~vD~~G~l~va~~~~----------------------- 204 (246)
T PF08450_consen 148 LYVADSFNGRIWRFDLDADGGELSNRRVFIDFPGGPGYPDGLAVDSDGNLWVADWGG----------------------- 204 (246)
T ss_dssp EEEEETTTTEEEEEEEETTTCCEEEEEEEEE-SSSSCEEEEEEEBTTS-EEEEEETT-----------------------
T ss_pred eeecccccceeEEEeccccccceeeeeeEEEcCCCCcCCCcceEcCCCCEEEEEcCC-----------------------
Confidence 9999999999999999642 2445555543 222469999999999999998753
Q ss_pred hhhcccCCCCCCceEEEEEeCCCCeEEEEEECCCCCcccceeEEEEe---CCEEEEeec
Q 018474 280 LISLLLPMGSDAGARVVKVDGNDGKIIRDFNDPDATYISFVTSAAEF---DGNLYLASL 335 (355)
Q Consensus 280 ~~~~~~~~~~~~~~~v~~~~~~~g~~~~~~~~~~g~~~~~~~~~~~~---~g~L~v~~~ 335 (355)
+.|.+|+| +|+.+..+..|.. .++.+++. .++|||++.
T Consensus 205 -------------~~I~~~~p-~G~~~~~i~~p~~----~~t~~~fgg~~~~~L~vTta 245 (246)
T PF08450_consen 205 -------------GRIVVFDP-DGKLLREIELPVP----RPTNCAFGGPDGKTLYVTTA 245 (246)
T ss_dssp -------------TEEEEEET-TSCEEEEEE-SSS----SEEEEEEESTTSSEEEEEEB
T ss_pred -------------CEEEEECC-CccEEEEEcCCCC----CEEEEEEECCCCCEEEEEeC
Confidence 58999999 8999999988732 57777774 388999985
No 3
>COG3386 Gluconolactonase [Carbohydrate transport and metabolism]
Probab=99.96 E-value=7.5e-26 Score=203.59 Aligned_cols=240 Identities=23% Similarity=0.353 Sum_probs=181.8
Q ss_pred CCCCceEEEeeCCC-eEEEEecCCEEEEEEcCCCeeEEeeccCCCcccCeEECCCCCEEEEeCCCcEEEEc-CCC-e-EE
Q 018474 51 VNHPEDVSVVVSKG-ALYTATRDGWVKYFILHNETLVNWKHIDSQSLLGLTTTKDGGVILCDNEKGLLKVT-EEG-V-EA 126 (355)
Q Consensus 51 ~~~p~~i~~d~~~g-~l~~~~~~g~i~~~~~~~g~~~~~~~~~~~p~~gl~~d~~g~L~v~~~~~gl~~~~-~~g-~-~~ 126 (355)
..-.|+.++++..+ .+|+....++|+++++.+|+.+.+......+. ++..|..|+|+++.. |+++++ +++ . +.
T Consensus 24 ~~~gEgP~w~~~~~~L~w~DI~~~~i~r~~~~~g~~~~~~~p~~~~~-~~~~d~~g~Lv~~~~--g~~~~~~~~~~~~t~ 100 (307)
T COG3386 24 ATLGEGPVWDPDRGALLWVDILGGRIHRLDPETGKKRVFPSPGGFSS-GALIDAGGRLIACEH--GVRLLDPDTGGKITL 100 (307)
T ss_pred cccccCccCcCCCCEEEEEeCCCCeEEEecCCcCceEEEECCCCccc-ceeecCCCeEEEEcc--ccEEEeccCCceeEE
Confidence 45567777886666 46677789999999998898888877666677 888999999998875 455555 445 4 55
Q ss_pred EcCCc-----CCcccEEEccCCcEEEEeCCCCCCCccccccccccCCCCeEEEEeCCCCeEEEeeccccccccEEEeCCC
Q 018474 127 IVPDA-----SFTNDVIAASDGTLYFTVASTKYTPTDFYKDMAEGKPYGQLRKYDPKLKETTVLHEGFYFANGIALSKNE 201 (355)
Q Consensus 127 ~~~~~-----~~~~~l~~d~dG~ly~~d~~~~~~~~~~~~~~~~~~~~g~l~~~dp~~~~~~~~~~~~~~pngi~~~~dg 201 (355)
+.... +.+|++.++++|.+||+++.. .. ....+....|.||++||.++..+.+...+..|||||+|||+
T Consensus 101 ~~~~~~~~~~~r~ND~~v~pdG~~wfgt~~~-~~-----~~~~~~~~~G~lyr~~p~g~~~~l~~~~~~~~NGla~SpDg 174 (307)
T COG3386 101 LAEPEDGLPLNRPNDGVVDPDGRIWFGDMGY-FD-----LGKSEERPTGSLYRVDPDGGVVRLLDDDLTIPNGLAFSPDG 174 (307)
T ss_pred eccccCCCCcCCCCceeEcCCCCEEEeCCCc-cc-----cCccccCCcceEEEEcCCCCEEEeecCcEEecCceEECCCC
Confidence 55432 899999999999999999873 11 22223355678999999655555555559999999999999
Q ss_pred CEEEEEeCCCCeEEEEEeC---CCCCcc-eeEecccCCCCcCceEECCCCCEEEEeecCCchhhHhhhcchhHHHHHHhc
Q 018474 202 DFVVVCESWKFRCRRYWLK---GDRAGI-LDAFIENLPGGPDNINLAPDGSFWIGLIKMNQTGVRAIQKCREKWELLDAY 277 (355)
Q Consensus 202 ~~l~v~~~~~~~i~~~~~~---~~~~~~-~~~~~~~~~g~p~~i~~d~~G~lwv~~~~~~~~~~~~~~~~~~~~~~~~~~ 277 (355)
+.+|++++..++|++|+.+ +...+. ...+.+..+|.|||+++|++|+||++...+
T Consensus 175 ~tly~aDT~~~~i~r~~~d~~~g~~~~~~~~~~~~~~~G~PDG~~vDadG~lw~~a~~~--------------------- 233 (307)
T COG3386 175 KTLYVADTPANRIHRYDLDPATGPIGGRRGFVDFDEEPGLPDGMAVDADGNLWVAAVWG--------------------- 233 (307)
T ss_pred CEEEEEeCCCCeEEEEecCcccCccCCcceEEEccCCCCCCCceEEeCCCCEEEecccC---------------------
Confidence 9999999999999999986 222222 123344567999999999999999755442
Q ss_pred cchhhcccCCCCCCceEEEEEeCCCCeEEEEEECCCCCcccceeEEEEeC---CEEEEeecCCCe
Q 018474 278 PGLISLLLPMGSDAGARVVKVDGNDGKIIRDFNDPDATYISFVTSAAEFD---GNLYLASLQSNF 339 (355)
Q Consensus 278 ~~~~~~~~~~~~~~~~~v~~~~~~~g~~~~~~~~~~g~~~~~~~~~~~~~---g~L~v~~~~~~~ 339 (355)
.++|.+|+| +|+.+..+..|.. .++..++.+ +.|||++...+.
T Consensus 234 --------------g~~v~~~~p-dG~l~~~i~lP~~----~~t~~~FgG~~~~~L~iTs~~~~~ 279 (307)
T COG3386 234 --------------GGRVVRFNP-DGKLLGEIKLPVK----RPTNPAFGGPDLNTLYITSARSGM 279 (307)
T ss_pred --------------CceEEEECC-CCcEEEEEECCCC----CCccceEeCCCcCEEEEEecCCCC
Confidence 148999999 8999999999863 455566654 899999987743
No 4
>COG4257 Vgb Streptogramin lyase [Defense mechanisms]
Probab=99.88 E-value=3.2e-20 Score=157.77 Aligned_cols=242 Identities=16% Similarity=0.133 Sum_probs=183.7
Q ss_pred eEecCCCCCCCceEEEeeCCCeEEEEecCCEEEEEEcCCCeeEEeecc-CCCcccCeEECCCCCEEEEeCCCcEEEEcC-
Q 018474 44 TKLGEGCVNHPEDVSVVVSKGALYTATRDGWVKYFILHNETLVNWKHI-DSQSLLGLTTTKDGGVILCDNEKGLLKVTE- 121 (355)
Q Consensus 44 ~~~~~~~~~~p~~i~~d~~~g~l~~~~~~g~i~~~~~~~g~~~~~~~~-~~~p~~gl~~d~~g~L~v~~~~~gl~~~~~- 121 (355)
..++.....+|..++.++++-.+|.+...|.|-++||++|+.+++... +.+|+ ++..++||..|+++.+.+|.|+++
T Consensus 54 ~~fpvp~G~ap~dvapapdG~VWft~qg~gaiGhLdP~tGev~~ypLg~Ga~Ph-giv~gpdg~~Witd~~~aI~R~dpk 132 (353)
T COG4257 54 AEFPVPNGSAPFDVAPAPDGAVWFTAQGTGAIGHLDPATGEVETYPLGSGASPH-GIVVGPDGSAWITDTGLAIGRLDPK 132 (353)
T ss_pred ceeccCCCCCccccccCCCCceEEecCccccceecCCCCCceEEEecCCCCCCc-eEEECCCCCeeEecCcceeEEecCc
Confidence 456666668999999995444566667788899999999999988654 56899 999999999999998889999994
Q ss_pred CC-eEEEcCCc----CCcccEEEccCCcEEEEeCCCCCCCccccccccccCCCCeEEEEeCCCCeEEEee-ccccccccE
Q 018474 122 EG-VEAIVPDA----SFTNDVIAASDGTLYFTVASTKYTPTDFYKDMAEGKPYGQLRKYDPKLKETTVLH-EGFYFANGI 195 (355)
Q Consensus 122 ~g-~~~~~~~~----~~~~~l~~d~dG~ly~~d~~~~~~~~~~~~~~~~~~~~g~l~~~dp~~~~~~~~~-~~~~~pngi 195 (355)
++ ++++.-.. ...+..++|++|+|||+... |.--|.||.++.++++. .....|+||
T Consensus 133 t~evt~f~lp~~~a~~nlet~vfD~~G~lWFt~q~------------------G~yGrLdPa~~~i~vfpaPqG~gpyGi 194 (353)
T COG4257 133 TLEVTRFPLPLEHADANLETAVFDPWGNLWFTGQI------------------GAYGRLDPARNVISVFPAPQGGGPYGI 194 (353)
T ss_pred ccceEEeecccccCCCcccceeeCCCccEEEeecc------------------ccceecCcccCceeeeccCCCCCCcce
Confidence 66 77764432 67888999999999999654 22337899888887773 445679999
Q ss_pred EEeCCCCEEEEEeCCCCeEEEEEeCCCCCcceeEecc--cCCCCcCceEECCCCCEEEEeecCCchhhHhhhcchhHHHH
Q 018474 196 ALSKNEDFVVVCESWKFRCRRYWLKGDRAGILDAFIE--NLPGGPDNINLAPDGSFWIGLIKMNQTGVRAIQKCREKWEL 273 (355)
Q Consensus 196 ~~~~dg~~l~v~~~~~~~i~~~~~~~~~~~~~~~~~~--~~~g~p~~i~~d~~G~lwv~~~~~~~~~~~~~~~~~~~~~~ 273 (355)
|.+|||. +|+++...+-|.++|... +..+.+.. .+.--.+.+-.|+.|++|+++...
T Consensus 195 ~atpdGs-vwyaslagnaiaridp~~---~~aev~p~P~~~~~gsRriwsdpig~~wittwg~----------------- 253 (353)
T COG4257 195 CATPDGS-VWYASLAGNAIARIDPFA---GHAEVVPQPNALKAGSRRIWSDPIGRAWITTWGT----------------- 253 (353)
T ss_pred EECCCCc-EEEEeccccceEEccccc---CCcceecCCCcccccccccccCccCcEEEeccCC-----------------
Confidence 9999998 999988888999998633 23333321 111113456789999999998762
Q ss_pred HHhccchhhcccCCCCCCceEEEEEeCCCCeEEEEEECCCCCcccceeEEEEe-CCEEEEeecCCCeEEEeeCCC
Q 018474 274 LDAYPGLISLLLPMGSDAGARVVKVDGNDGKIIRDFNDPDATYISFVTSAAEF-DGNLYLASLQSNFIGILPLDG 347 (355)
Q Consensus 274 ~~~~~~~~~~~~~~~~~~~~~v~~~~~~~g~~~~~~~~~~g~~~~~~~~~~~~-~g~L~v~~~~~~~i~~~~~~~ 347 (355)
+.+.+||| .-+.-..|..|... ....++..+ .|++|+.....+.|.|++..+
T Consensus 254 -------------------g~l~rfdP-s~~sW~eypLPgs~--arpys~rVD~~grVW~sea~agai~rfdpet 306 (353)
T COG4257 254 -------------------GSLHRFDP-SVTSWIEYPLPGSK--ARPYSMRVDRHGRVWLSEADAGAIGRFDPET 306 (353)
T ss_pred -------------------ceeeEeCc-ccccceeeeCCCCC--CCcceeeeccCCcEEeeccccCceeecCccc
Confidence 57999999 55557788777642 234455554 599999999999999987554
No 5
>PF03088 Str_synth: Strictosidine synthase; InterPro: IPR018119 This entry represents a conserved region found in strictosidine synthase (4.3.3.2 from EC), a key enzyme in alkaloid biosynthesis. It catalyses the Pictet-Spengler stereospecific condensation of tryptamine with secologanin to form strictosidine []. The structure of the native enzyme from the Indian medicinal plant Rauvolfia serpentina (Serpentwood) (Devilpepper) represents the first example of a six-bladed four-stranded beta-propeller fold from the plant kingdom [].; GO: 0016844 strictosidine synthase activity, 0009058 biosynthetic process; PDB: 2FPB_A 2V91_B 2FP8_A 3V1S_B 2FPC_A 2VAQ_A 2FP9_B.
Probab=99.81 E-value=8.2e-20 Score=132.42 Aligned_cols=88 Identities=52% Similarity=0.946 Sum_probs=74.1
Q ss_pred ccEEEccC-CcEEEEeCCCCCCCccccccccccCCCCeEEEEeCCCCeEEEeeccccccccEEEeCCCCEEEEEeCCCCe
Q 018474 135 NDVIAASD-GTLYFTVASTKYTPTDFYKDMAEGKPYGQLRKYDPKLKETTVLHEGFYFANGIALSKNEDFVVVCESWKFR 213 (355)
Q Consensus 135 ~~l~~d~d-G~ly~~d~~~~~~~~~~~~~~~~~~~~g~l~~~dp~~~~~~~~~~~~~~pngi~~~~dg~~l~v~~~~~~~ 213 (355)
|+++++++ |.|||||++.+|...++...++++.++|++++|||++++.+++..++.+||||++++|+.+++++|+.+.|
T Consensus 1 ndldv~~~~g~vYfTdsS~~~~~~~~~~~~le~~~~GRll~ydp~t~~~~vl~~~L~fpNGVals~d~~~vlv~Et~~~R 80 (89)
T PF03088_consen 1 NDLDVDQDTGTVYFTDSSSRYDRRDWVYDLLEGRPTGRLLRYDPSTKETTVLLDGLYFPNGVALSPDESFVLVAETGRYR 80 (89)
T ss_dssp -EEEE-TTT--EEEEES-SS--TTGHHHHHHHT---EEEEEEETTTTEEEEEEEEESSEEEEEE-TTSSEEEEEEGGGTE
T ss_pred CceeEecCCCEEEEEeCccccCccceeeeeecCCCCcCEEEEECCCCeEEEehhCCCccCeEEEcCCCCEEEEEeccCce
Confidence 68999998 89999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred EEEEEeCCC
Q 018474 214 CRRYWLKGD 222 (355)
Q Consensus 214 i~~~~~~~~ 222 (355)
|.|||++|+
T Consensus 81 i~rywl~Gp 89 (89)
T PF03088_consen 81 ILRYWLKGP 89 (89)
T ss_dssp EEEEESSST
T ss_pred EEEEEEeCC
Confidence 999999763
No 6
>PLN02919 haloacid dehalogenase-like hydrolase family protein
Probab=99.79 E-value=4.1e-16 Score=162.54 Aligned_cols=245 Identities=19% Similarity=0.220 Sum_probs=171.0
Q ss_pred CCCCCceEEEeeCCCeEEEEec-CCEEEEEEcCCCeeEEeecc---------------CCCcccCeEECCCCC-EEEEeC
Q 018474 50 CVNHPEDVSVVVSKGALYTATR-DGWVKYFILHNETLVNWKHI---------------DSQSLLGLTTTKDGG-VILCDN 112 (355)
Q Consensus 50 ~~~~p~~i~~d~~~g~l~~~~~-~g~i~~~~~~~g~~~~~~~~---------------~~~p~~gl~~d~~g~-L~v~~~ 112 (355)
.+..|..+++|+.++.+|++.. +++|.++|. +|+....... .+.|. |+++|++|+ |||++.
T Consensus 566 ~l~~P~gvavd~~~g~lyVaDs~n~rI~v~d~-~G~~i~~ig~~g~~G~~dG~~~~a~f~~P~-GIavd~~gn~LYVaDt 643 (1057)
T PLN02919 566 PLKFPGKLAIDLLNNRLFISDSNHNRIVVTDL-DGNFIVQIGSTGEEGLRDGSFEDATFNRPQ-GLAYNAKKNLLYVADT 643 (1057)
T ss_pred cCCCCceEEEECCCCeEEEEECCCCeEEEEeC-CCCEEEEEccCCCcCCCCCchhccccCCCc-EEEEeCCCCEEEEEeC
Confidence 4688999999966788998765 688999998 4544322211 13589 999998765 899997
Q ss_pred CCc-EEEEcC-CC-eEEEcCC-----------------cCCcccEEEcc-CCcEEEEeCCCCCCCccccccccccCCCCe
Q 018474 113 EKG-LLKVTE-EG-VEAIVPD-----------------ASFTNDVIAAS-DGTLYFTVASTKYTPTDFYKDMAEGKPYGQ 171 (355)
Q Consensus 113 ~~g-l~~~~~-~g-~~~~~~~-----------------~~~~~~l~~d~-dG~ly~~d~~~~~~~~~~~~~~~~~~~~g~ 171 (355)
.++ +.+++. ++ ++++... .+.|.++++++ +|.+|+++.. ...
T Consensus 644 ~n~~Ir~id~~~~~V~tlag~G~~g~~~~gg~~~~~~~ln~P~gVa~dp~~g~LyVad~~-----------------~~~ 706 (1057)
T PLN02919 644 ENHALREIDFVNETVRTLAGNGTKGSDYQGGKKGTSQVLNSPWDVCFEPVNEKVYIAMAG-----------------QHQ 706 (1057)
T ss_pred CCceEEEEecCCCEEEEEeccCcccCCCCCChhhhHhhcCCCeEEEEecCCCeEEEEECC-----------------CCe
Confidence 654 666774 56 6665321 25789999999 6799999876 456
Q ss_pred EEEEeCCCCeEEEee---------------ccccccccEEEeCCCCEEEEEeCCCCeEEEEEeCCCCCcce---------
Q 018474 172 LRKYDPKLKETTVLH---------------EGFYFANGIALSKNEDFVVVCESWKFRCRRYWLKGDRAGIL--------- 227 (355)
Q Consensus 172 l~~~dp~~~~~~~~~---------------~~~~~pngi~~~~dg~~l~v~~~~~~~i~~~~~~~~~~~~~--------- 227 (355)
+++||+.++....+. ..+..|+||++++|++.+|++++..++|++|++++......
T Consensus 707 I~v~d~~~g~v~~~~G~G~~~~~~g~~~~~~~~~~P~GIavspdG~~LYVADs~n~~Irv~D~~tg~~~~~~gg~~~~~~ 786 (1057)
T PLN02919 707 IWEYNISDGVTRVFSGDGYERNLNGSSGTSTSFAQPSGISLSPDLKELYIADSESSSIRALDLKTGGSRLLAGGDPTFSD 786 (1057)
T ss_pred EEEEECCCCeEEEEecCCccccCCCCccccccccCccEEEEeCCCCEEEEEECCCCeEEEEECCCCcEEEEEecccccCc
Confidence 777777666554432 12457999999999999999999999999999864321000
Q ss_pred --eEecc-------cCCCCcCceEECCCCCEEEEeecCCchhhHhhhcchhHHHHHHhccchhhcccCCCCCCceEEEEE
Q 018474 228 --DAFIE-------NLPGGPDNINLAPDGSFWIGLIKMNQTGVRAIQKCREKWELLDAYPGLISLLLPMGSDAGARVVKV 298 (355)
Q Consensus 228 --~~~~~-------~~~g~p~~i~~d~~G~lwv~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~ 298 (355)
..+.+ ..-..|.++++|++|++||++... +.|.+|
T Consensus 787 ~l~~fG~~dG~g~~~~l~~P~Gvavd~dG~LYVADs~N------------------------------------~rIrvi 830 (1057)
T PLN02919 787 NLFKFGDHDGVGSEVLLQHPLGVLCAKDGQIYVADSYN------------------------------------HKIKKL 830 (1057)
T ss_pred ccccccCCCCchhhhhccCCceeeEeCCCcEEEEECCC------------------------------------CEEEEE
Confidence 00000 001248899999999999999652 479999
Q ss_pred eCCCCeEEEEEECC------CC----CcccceeEEEEe-CCEEEEeecCCCeEEEeeCCCCCC
Q 018474 299 DGNDGKIIRDFNDP------DA----TYISFVTSAAEF-DGNLYLASLQSNFIGILPLDGPEP 350 (355)
Q Consensus 299 ~~~~g~~~~~~~~~------~g----~~~~~~~~~~~~-~g~L~v~~~~~~~i~~~~~~~~~~ 350 (355)
|+ ++..+..+... +| ..++.+.+++.+ +|+|||++..++.|.++++.+...
T Consensus 831 D~-~tg~v~tiaG~G~~G~~dG~~~~a~l~~P~GIavd~dG~lyVaDt~Nn~Irvid~~~~~~ 892 (1057)
T PLN02919 831 DP-ATKRVTTLAGTGKAGFKDGKALKAQLSEPAGLALGENGRLFVADTNNSLIRYLDLNKGEA 892 (1057)
T ss_pred EC-CCCeEEEEeccCCcCCCCCcccccccCCceEEEEeCCCCEEEEECCCCEEEEEECCCCcc
Confidence 98 54443333221 11 123456667665 589999999999999999987543
No 7
>COG4257 Vgb Streptogramin lyase [Defense mechanisms]
Probab=99.78 E-value=1.1e-16 Score=136.44 Aligned_cols=242 Identities=9% Similarity=0.075 Sum_probs=178.2
Q ss_pred CceEecCCCCCCCceEEEeeCCCeEEEEecCCEEEEEEcCCCeeEEeeccCC----CcccCeEECCCCCEEEEeCCCcEE
Q 018474 42 GLTKLGEGCVNHPEDVSVVVSKGALYTATRDGWVKYFILHNETLVNWKHIDS----QSLLGLTTTKDGGVILCDNEKGLL 117 (355)
Q Consensus 42 ~~~~~~~~~~~~p~~i~~d~~~g~l~~~~~~g~i~~~~~~~g~~~~~~~~~~----~p~~gl~~d~~g~L~v~~~~~gl~ 117 (355)
+.+++++|....|..|+.+ .+|..|+......|.|+++++.++++|..... ... ...+|++|+||++.. .|.+
T Consensus 94 ev~~ypLg~Ga~Phgiv~g-pdg~~Witd~~~aI~R~dpkt~evt~f~lp~~~a~~nle-t~vfD~~G~lWFt~q-~G~y 170 (353)
T COG4257 94 EVETYPLGSGASPHGIVVG-PDGSAWITDTGLAIGRLDPKTLEVTRFPLPLEHADANLE-TAVFDPWGNLWFTGQ-IGAY 170 (353)
T ss_pred ceEEEecCCCCCCceEEEC-CCCCeeEecCcceeEEecCcccceEEeecccccCCCccc-ceeeCCCccEEEeec-cccc
Confidence 3467888888999999999 56677877665589999999999998864332 344 678999999999874 3544
Q ss_pred -EEcC-CC-eEEEcCCc-CCcccEEEccCCcEEEEeCCCCCCCccccccccccCCCCeEEEEeCCCCeEEEeec--c-cc
Q 018474 118 -KVTE-EG-VEAIVPDA-SFTNDVIAASDGTLYFTVASTKYTPTDFYKDMAEGKPYGQLRKYDPKLKETTVLHE--G-FY 190 (355)
Q Consensus 118 -~~~~-~g-~~~~~~~~-~~~~~l~~d~dG~ly~~d~~~~~~~~~~~~~~~~~~~~g~l~~~dp~~~~~~~~~~--~-~~ 190 (355)
++|+ .+ ++++.... ..|++|++.+||.+|++.-. ...|-++||.++..+++.. . -.
T Consensus 171 GrLdPa~~~i~vfpaPqG~gpyGi~atpdGsvwyasla-----------------gnaiaridp~~~~aev~p~P~~~~~ 233 (353)
T COG4257 171 GRLDPARNVISVFPAPQGGGPYGICATPDGSVWYASLA-----------------GNAIARIDPFAGHAEVVPQPNALKA 233 (353)
T ss_pred eecCcccCceeeeccCCCCCCcceEECCCCcEEEEecc-----------------ccceEEcccccCCcceecCCCcccc
Confidence 7776 56 88876554 78999999999999998643 4468899998885554432 1 12
Q ss_pred ccccEEEeCCCCEEEEEeCCCCeEEEEEeCCCCCcceeEe-cccCCCCcCceEECCCCCEEEEeecCCchhhHhhhcchh
Q 018474 191 FANGIALSKNEDFVVVCESWKFRCRRYWLKGDRAGILDAF-IENLPGGPDNINLAPDGSFWIGLIKMNQTGVRAIQKCRE 269 (355)
Q Consensus 191 ~pngi~~~~dg~~l~v~~~~~~~i~~~~~~~~~~~~~~~~-~~~~~g~p~~i~~d~~G~lwv~~~~~~~~~~~~~~~~~~ 269 (355)
....+-.++.|+ +|+++.....+++|+.+... ...+ .....-.|+.+.+|+.|++|.+....
T Consensus 234 gsRriwsdpig~-~wittwg~g~l~rfdPs~~s---W~eypLPgs~arpys~rVD~~grVW~sea~a------------- 296 (353)
T COG4257 234 GSRRIWSDPIGR-AWITTWGTGSLHRFDPSVTS---WIEYPLPGSKARPYSMRVDRHGRVWLSEADA------------- 296 (353)
T ss_pred cccccccCccCc-EEEeccCCceeeEeCccccc---ceeeeCCCCCCCcceeeeccCCcEEeecccc-------------
Confidence 234566788887 99999999999999985432 2222 11222357889999999999988652
Q ss_pred HHHHHHhccchhhcccCCCCCCceEEEEEeCCCCeEEEEEECCCCCcccceeEEEEeCCEEEEeecCCCeEEEeeCC
Q 018474 270 KWELLDAYPGLISLLLPMGSDAGARVVKVDGNDGKIIRDFNDPDATYISFVTSAAEFDGNLYLASLQSNFIGILPLD 346 (355)
Q Consensus 270 ~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~g~~~~~~~~~~g~~~~~~~~~~~~~g~L~v~~~~~~~i~~~~~~ 346 (355)
+.|.+||| ....+..|..+.- ......+--..|++|++...-+.+.+++..
T Consensus 297 -----------------------gai~rfdp-eta~ftv~p~pr~--n~gn~ql~gr~ge~W~~e~gvd~lv~~r~~ 347 (353)
T COG4257 297 -----------------------GAIGRFDP-ETARFTVLPIPRP--NSGNIQLDGRPGELWFTEAGVDALVTTRIG 347 (353)
T ss_pred -----------------------CceeecCc-ccceEEEecCCCC--CCCceeccCCCCceeecccCcceeEEEEee
Confidence 57999999 8888888877543 122222233459999999999999988754
No 8
>KOG4499 consensus Ca2+-binding protein Regucalcin/SMP30 [Inorganic ion transport and metabolism; Signal transduction mechanisms]
Probab=99.70 E-value=1.7e-14 Score=120.39 Aligned_cols=232 Identities=17% Similarity=0.224 Sum_probs=156.5
Q ss_pred CCCceEEEeeCCCeEEEEecCCEEEEEEcCCCeeEEeeccCCCcccCeEECCCC--CEEEEeCCCcEEEEcCCC----eE
Q 018474 52 NHPEDVSVVVSKGALYTATRDGWVKYFILHNETLVNWKHIDSQSLLGLTTTKDG--GVILCDNEKGLLKVTEEG----VE 125 (355)
Q Consensus 52 ~~p~~i~~d~~~g~l~~~~~~g~i~~~~~~~g~~~~~~~~~~~p~~gl~~d~~g--~L~v~~~~~gl~~~~~~g----~~ 125 (355)
.+|..... .+..+|+....|.|.|+|..+.+..+.. ..+.|..|..+--.| ..+++..+.....++-+| ..
T Consensus 18 Egp~w~~~--~~sLl~VDi~ag~v~r~D~~qn~v~ra~-ie~p~~ag~ilpv~~~~q~~~v~~G~kf~i~nwd~~~~~a~ 94 (310)
T KOG4499|consen 18 EGPHWDVE--RQSLLYVDIEAGEVHRYDIEQNKVYRAK-IEGPPSAGFILPVEGGPQEFAVGCGSKFVIVNWDGVSESAK 94 (310)
T ss_pred CCCceEEe--cceEEEEEeccCceehhhhhhhheEEEE-EecCcceeEEEEecCCCceEEEeecceEEEEEcccccceee
Confidence 34444333 3567889999999999998777665532 222222144332122 355555443333332122 22
Q ss_pred EEcC-----C---cCCcccEEEccCCcEEEEeCCCCCCCccccccccccCCCCeEEEEeCCCCeEEEeeccccccccEEE
Q 018474 126 AIVP-----D---ASFTNDVIAASDGTLYFTVASTKYTPTDFYKDMAEGKPYGQLRKYDPKLKETTVLHEGFYFANGIAL 197 (355)
Q Consensus 126 ~~~~-----~---~~~~~~l~~d~dG~ly~~d~~~~~~~~~~~~~~~~~~~~g~l~~~dp~~~~~~~~~~~~~~pngi~~ 197 (355)
++.. . -+..|+--+||+|+.|.+.+.. ....+|. ..|.+|++-+ .++++.+...+..+||+++
T Consensus 95 v~~t~~ev~~d~kknR~NDgkvdP~Gryy~GtMad-------~~~~le~-~~g~Ly~~~~-~h~v~~i~~~v~IsNgl~W 165 (310)
T KOG4499|consen 95 VYRTLFEVQPDRKKNRLNDGKVDPDGRYYGGTMAD-------FGDDLEP-IGGELYSWLA-GHQVELIWNCVGISNGLAW 165 (310)
T ss_pred eeeeccccCchHHhcccccCccCCCCceeeeeecc-------ccccccc-cccEEEEecc-CCCceeeehhccCCccccc
Confidence 2221 1 1778899999999999887651 1122222 2456777766 6788888888999999999
Q ss_pred eCCCCEEEEEeCCCCeEEEEE--eCCCCCcceeEecc--c----CCCCcCceEECCCCCEEEEeecCCchhhHhhhcchh
Q 018474 198 SKNEDFVVVCESWKFRCRRYW--LKGDRAGILDAFIE--N----LPGGPDNINLAPDGSFWIGLIKMNQTGVRAIQKCRE 269 (355)
Q Consensus 198 ~~dg~~l~v~~~~~~~i~~~~--~~~~~~~~~~~~~~--~----~~g~p~~i~~d~~G~lwv~~~~~~~~~~~~~~~~~~ 269 (355)
+.|.+..|++++.+..|-.|+ ..+....+++.+.+ . .+-.|||+++|.+|+|||+++.+
T Consensus 166 d~d~K~fY~iDsln~~V~a~dyd~~tG~~snr~~i~dlrk~~~~e~~~PDGm~ID~eG~L~Va~~ng------------- 232 (310)
T KOG4499|consen 166 DSDAKKFYYIDSLNYEVDAYDYDCPTGDLSNRKVIFDLRKSQPFESLEPDGMTIDTEGNLYVATFNG------------- 232 (310)
T ss_pred cccCcEEEEEccCceEEeeeecCCCcccccCcceeEEeccCCCcCCCCCCcceEccCCcEEEEEecC-------------
Confidence 999999999999999995555 55544555544433 1 22479999999999999999874
Q ss_pred HHHHHHhccchhhcccCCCCCCceEEEEEeCCCCeEEEEEECCCCCcccceeEEEEeC---CEEEEeec
Q 018474 270 KWELLDAYPGLISLLLPMGSDAGARVVKVDGNDGKIIRDFNDPDATYISFVTSAAEFD---GNLYLASL 335 (355)
Q Consensus 270 ~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~g~~~~~~~~~~g~~~~~~~~~~~~~---g~L~v~~~ 335 (355)
+.|+++||.+|+++..+.-|. ..++++++.+ +-||+++.
T Consensus 233 -----------------------~~V~~~dp~tGK~L~eiklPt----~qitsccFgGkn~d~~yvT~a 274 (310)
T KOG4499|consen 233 -----------------------GTVQKVDPTTGKILLEIKLPT----PQITSCCFGGKNLDILYVTTA 274 (310)
T ss_pred -----------------------cEEEEECCCCCcEEEEEEcCC----CceEEEEecCCCccEEEEEeh
Confidence 579999999999999998774 3688888875 56787764
No 9
>PF10282 Lactonase: Lactonase, 7-bladed beta-propeller; InterPro: IPR019405 6-phosphogluconolactonases (6PGL) 3.1.1.31 from EC, which hydrolyses 6-phosphogluconolactone to 6-phosphogluconate is opne of the enzymes in the pentose phosphate pathway. Two families of structurally dissimilar 6PGLs are known to exist: the Escherichia coli (strain K12) YbhE IPR022528 from INTERPRO [] and the Pseudomonas aeruginosa DevB IPR005900 from INTERPRO [] types. This entry contains bacterial 6-phosphogluconolactonases (6PGL) YbhE-type 3.1.1.31 from EC which hydrolyse 6-phosphogluconolactone to 6-phosphogluconate. The entry also contains the fungal muconate lactonizing enzyme carboxy-cis,cis-muconate cyclase 5.5.1.5 from EC and muconate cycloisomerase 5.5.1.1 from EC, which convert cis,cis-muconates to muconolactones and vice versa as part of the microbial beta-ketoadipate pathway. Structures have been reported for the E. coli 6-phosphogluconolactonase and Neurospora crassa muconate cycloisomerase. Structures of proteins in this family have revealed a 7-bladed beta-propeller fold [].; PDB: 3SCY_A 1L0Q_A 3HFQ_B 3FGB_A 1RI6_A 3U4Y_A 3BWS_A 1JOF_H.
Probab=99.64 E-value=2.7e-13 Score=126.11 Aligned_cols=259 Identities=18% Similarity=0.258 Sum_probs=164.0
Q ss_pred CCcCccCceEecCCCCCCCceEEEeeCCCeEEEEec----CCEEEEE--EcCCCeeEEee---ccCCCcccCeEECCCCC
Q 018474 36 ESSSMKGLTKLGEGCVNHPEDVSVVVSKGALYTATR----DGWVKYF--ILHNETLVNWK---HIDSQSLLGLTTTKDGG 106 (355)
Q Consensus 36 ~~~~l~~~~~~~~~~~~~p~~i~~d~~~g~l~~~~~----~g~i~~~--~~~~g~~~~~~---~~~~~p~~gl~~d~~g~ 106 (355)
.++.|+....+.. ...|..++++++++.||+..+ .|.|..+ +.++|+++... ..+..|. .+++|++|+
T Consensus 23 ~~g~l~~~~~~~~--~~~Ps~l~~~~~~~~LY~~~e~~~~~g~v~~~~i~~~~g~L~~~~~~~~~g~~p~-~i~~~~~g~ 99 (345)
T PF10282_consen 23 ETGTLTLVQTVAE--GENPSWLAVSPDGRRLYVVNEGSGDSGGVSSYRIDPDTGTLTLLNSVPSGGSSPC-HIAVDPDGR 99 (345)
T ss_dssp TTTEEEEEEEEEE--SSSECCEEE-TTSSEEEEEETTSSTTTEEEEEEEETTTTEEEEEEEEEESSSCEE-EEEECTTSS
T ss_pred CCCCceEeeeecC--CCCCceEEEEeCCCEEEEEEccccCCCCEEEEEECCCcceeEEeeeeccCCCCcE-EEEEecCCC
Confidence 3445555444443 588999999988999999876 4677554 55447766543 2456788 899998886
Q ss_pred -EEEEeCCCc-E--EEEcCCC-eEEE---c-C----------CcCCcccEEEccCC-cEEEEeCCCCCCCcccccccccc
Q 018474 107 -VILCDNEKG-L--LKVTEEG-VEAI---V-P----------DASFTNDVIAASDG-TLYFTVASTKYTPTDFYKDMAEG 166 (355)
Q Consensus 107 -L~v~~~~~g-l--~~~~~~g-~~~~---~-~----------~~~~~~~l~~d~dG-~ly~~d~~~~~~~~~~~~~~~~~ 166 (355)
||++....| + +.++.+| +... . . ....|+.+.++|+| .+|++|..
T Consensus 100 ~l~vany~~g~v~v~~l~~~g~l~~~~~~~~~~g~g~~~~rq~~~h~H~v~~~pdg~~v~v~dlG--------------- 164 (345)
T PF10282_consen 100 FLYVANYGGGSVSVFPLDDDGSLGEVVQTVRHEGSGPNPDRQEGPHPHQVVFSPDGRFVYVPDLG--------------- 164 (345)
T ss_dssp EEEEEETTTTEEEEEEECTTSEEEEEEEEEESEEEESSTTTTSSTCEEEEEE-TTSSEEEEEETT---------------
T ss_pred EEEEEEccCCeEEEEEccCCcccceeeeecccCCCCCcccccccccceeEEECCCCCEEEEEecC---------------
Confidence 788887655 3 3344456 3221 1 0 11678899999998 58888865
Q ss_pred CCCCeEEE--EeCCCCeEEEe----eccccccccEEEeCCCCEEEEEeCCCCeEEEEEeCC--CCCcceeEecccCC---
Q 018474 167 KPYGQLRK--YDPKLKETTVL----HEGFYFANGIALSKNEDFVVVCESWKFRCRRYWLKG--DRAGILDAFIENLP--- 235 (355)
Q Consensus 167 ~~~g~l~~--~dp~~~~~~~~----~~~~~~pngi~~~~dg~~l~v~~~~~~~i~~~~~~~--~~~~~~~~~~~~~~--- 235 (355)
..+|+. ++..++++... ......|..++++||++.+|+.+...+.|.+|+++. ......+... .++
T Consensus 165 --~D~v~~~~~~~~~~~l~~~~~~~~~~G~GPRh~~f~pdg~~~Yv~~e~s~~v~v~~~~~~~g~~~~~~~~~-~~~~~~ 241 (345)
T PF10282_consen 165 --ADRVYVYDIDDDTGKLTPVDSIKVPPGSGPRHLAFSPDGKYAYVVNELSNTVSVFDYDPSDGSLTEIQTIS-TLPEGF 241 (345)
T ss_dssp --TTEEEEEEE-TTS-TEEEEEEEECSTTSSEEEEEE-TTSSEEEEEETTTTEEEEEEEETTTTEEEEEEEEE-SCETTS
T ss_pred --CCEEEEEEEeCCCceEEEeeccccccCCCCcEEEEcCCcCEEEEecCCCCcEEEEeecccCCceeEEEEee-eccccc
Confidence 334554 45544445432 234567899999999999999999999999999862 2222222221 121
Q ss_pred -C--CcCceEECCCCC-EEEEeecCCchhhHhhhcchhHHHHHHhccchhhcccCCCCCCceEEEEEeCCCCeEEEEEEC
Q 018474 236 -G--GPDNINLAPDGS-FWIGLIKMNQTGVRAIQKCREKWELLDAYPGLISLLLPMGSDAGARVVKVDGNDGKIIRDFND 311 (355)
Q Consensus 236 -g--~p~~i~~d~~G~-lwv~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~g~~~~~~~~ 311 (355)
+ .+.++++++||+ +||+.... ..-.++.+|+++|+....-..
T Consensus 242 ~~~~~~~~i~ispdg~~lyvsnr~~----------------------------------~sI~vf~~d~~~g~l~~~~~~ 287 (345)
T PF10282_consen 242 TGENAPAEIAISPDGRFLYVSNRGS----------------------------------NSISVFDLDPATGTLTLVQTV 287 (345)
T ss_dssp CSSSSEEEEEE-TTSSEEEEEECTT----------------------------------TEEEEEEECTTTTTEEEEEEE
T ss_pred cccCCceeEEEecCCCEEEEEeccC----------------------------------CEEEEEEEecCCCceEEEEEE
Confidence 1 466789999997 57766441 112467776646664332222
Q ss_pred C-CCCcccceeEEEE--eCCEEEEeecCCCeEEEeeCCCCCCCc
Q 018474 312 P-DATYISFVTSAAE--FDGNLYLASLQSNFIGILPLDGPEPQL 352 (355)
Q Consensus 312 ~-~g~~~~~~~~~~~--~~g~L~v~~~~~~~i~~~~~~~~~~~~ 352 (355)
+ .|. .+..+.. ++..||+++..++.|.+++++...-.|
T Consensus 288 ~~~G~---~Pr~~~~s~~g~~l~Va~~~s~~v~vf~~d~~tG~l 328 (345)
T PF10282_consen 288 PTGGK---FPRHFAFSPDGRYLYVANQDSNTVSVFDIDPDTGKL 328 (345)
T ss_dssp EESSS---SEEEEEE-TTSSEEEEEETTTTEEEEEEEETTTTEE
T ss_pred eCCCC---CccEEEEeCCCCEEEEEecCCCeEEEEEEeCCCCcE
Confidence 2 232 3444554 568899999999999999987655443
No 10
>PF08450 SGL: SMP-30/Gluconolaconase/LRE-like region; InterPro: IPR013658 This family describes a region that is found in proteins expressed by a variety of eukaryotic and prokaryotic species. These proteins include various enzymes, such as senescence marker protein 30 (SMP-30, Q15493 from SWISSPROT), gluconolactonase (Q01578 from SWISSPROT) and luciferin-regenerating enzyme (LRE, Q86DU5 from SWISSPROT). SMP-30 is known to hydrolyse diisopropyl phosphorofluoridate in the liver, and has been noted as having sequence similarity, in the region described in this family, with PON1 (P52430 from SWISSPROT) and LRE. ; PDB: 2GHS_A 2DG0_L 2DG1_D 2DSO_D 3E5Z_A 2IAT_A 2IAV_A 2GVV_A 3HLI_A 2GVU_A ....
Probab=99.63 E-value=2.2e-14 Score=127.12 Aligned_cols=178 Identities=19% Similarity=0.335 Sum_probs=129.8
Q ss_pred CCCceEEEeeCCCeEEEEecCCEEEEEEcCCCeeEEeecc------CCCcccCeEECCCCCEEEEeCCC---------cE
Q 018474 52 NHPEDVSVVVSKGALYTATRDGWVKYFILHNETLVNWKHI------DSQSLLGLTTTKDGGVILCDNEK---------GL 116 (355)
Q Consensus 52 ~~p~~i~~d~~~g~l~~~~~~g~i~~~~~~~g~~~~~~~~------~~~p~~gl~~d~~g~L~v~~~~~---------gl 116 (355)
..|.+++++..++.+|++...+ +..+|+.+++.+.+... ..+|+ .+++|++|+||+++... ++
T Consensus 40 ~~~~G~~~~~~~g~l~v~~~~~-~~~~d~~~g~~~~~~~~~~~~~~~~~~N-D~~vd~~G~ly~t~~~~~~~~~~~~g~v 117 (246)
T PF08450_consen 40 PGPNGMAFDRPDGRLYVADSGG-IAVVDPDTGKVTVLADLPDGGVPFNRPN-DVAVDPDGNLYVTDSGGGGASGIDPGSV 117 (246)
T ss_dssp SSEEEEEEECTTSEEEEEETTC-EEEEETTTTEEEEEEEEETTCSCTEEEE-EEEE-TTS-EEEEEECCBCTTCGGSEEE
T ss_pred CCCceEEEEccCCEEEEEEcCc-eEEEecCCCcEEEEeeccCCCcccCCCc-eEEEcCCCCEEEEecCCCccccccccce
Confidence 3499999996679999998766 56669989987766543 24588 99999999999998642 48
Q ss_pred EEEcCCC-eEEEcCCcCCcccEEEccCC-cEEEEeCCCCCCCccccccccccCCCCeEEEEeCC--CCeE---EEee--c
Q 018474 117 LKVTEEG-VEAIVPDASFTNDVIAASDG-TLYFTVASTKYTPTDFYKDMAEGKPYGQLRKYDPK--LKET---TVLH--E 187 (355)
Q Consensus 117 ~~~~~~g-~~~~~~~~~~~~~l~~d~dG-~ly~~d~~~~~~~~~~~~~~~~~~~~g~l~~~dp~--~~~~---~~~~--~ 187 (355)
++++.++ ++.+......||+|++++|| .||++++. .+++++|+.+ ++++ +++. .
T Consensus 118 ~~~~~~~~~~~~~~~~~~pNGi~~s~dg~~lyv~ds~-----------------~~~i~~~~~~~~~~~~~~~~~~~~~~ 180 (246)
T PF08450_consen 118 YRIDPDGKVTVVADGLGFPNGIAFSPDGKTLYVADSF-----------------NGRIWRFDLDADGGELSNRRVFIDFP 180 (246)
T ss_dssp EEEETTSEEEEEEEEESSEEEEEEETTSSEEEEEETT-----------------TTEEEEEEEETTTCCEEEEEEEEE-S
T ss_pred EEECCCCeEEEEecCcccccceEECCcchheeecccc-----------------cceeEEEeccccccceeeeeeEEEcC
Confidence 9998667 77666666899999999999 59999876 5678888764 3322 2232 1
Q ss_pred c-ccccccEEEeCCCCEEEEEeCCCCeEEEEEeCCCCCcceeEecccCC-CCcCceEEC-CC-CCEEEEee
Q 018474 188 G-FYFANGIALSKNEDFVVVCESWKFRCRRYWLKGDRAGILDAFIENLP-GGPDNINLA-PD-GSFWIGLI 254 (355)
Q Consensus 188 ~-~~~pngi~~~~dg~~l~v~~~~~~~i~~~~~~~~~~~~~~~~~~~~~-g~p~~i~~d-~~-G~lwv~~~ 254 (355)
. ...|.|++++.+|+ +|++....++|++|+.+|......+ .| ..|.++++. ++ +.|||++.
T Consensus 181 ~~~g~pDG~~vD~~G~-l~va~~~~~~I~~~~p~G~~~~~i~-----~p~~~~t~~~fgg~~~~~L~vTta 245 (246)
T PF08450_consen 181 GGPGYPDGLAVDSDGN-LWVADWGGGRIVVFDPDGKLLREIE-----LPVPRPTNCAFGGPDGKTLYVTTA 245 (246)
T ss_dssp SSSCEEEEEEEBTTS--EEEEEETTTEEEEEETTSCEEEEEE------SSSSEEEEEEESTTSSEEEEEEB
T ss_pred CCCcCCCcceEcCCCC-EEEEEcCCCEEEEECCCccEEEEEc-----CCCCCEEEEEEECCCCCEEEEEeC
Confidence 2 23599999999997 9999988999999998764332222 22 368999983 33 56999874
No 11
>COG2706 3-carboxymuconate cyclase [Carbohydrate transport and metabolism]
Probab=99.63 E-value=1.1e-12 Score=116.20 Aligned_cols=262 Identities=16% Similarity=0.174 Sum_probs=175.7
Q ss_pred CCcCccCceEecCCCCCCCceEEEeeCCCeEEEEecC---CEE--EEEEcCCCeeEEeec---cCCCcccCeEECCCCC-
Q 018474 36 ESSSMKGLTKLGEGCVNHPEDVSVVVSKGALYTATRD---GWV--KYFILHNETLVNWKH---IDSQSLLGLTTTKDGG- 106 (355)
Q Consensus 36 ~~~~l~~~~~~~~~~~~~p~~i~~d~~~g~l~~~~~~---g~i--~~~~~~~g~~~~~~~---~~~~p~~gl~~d~~g~- 106 (355)
..+.++..+.+.. ...|..|+++++.+.||++... |+| +++|+.+|+++.... .+..|. -+++|++|+
T Consensus 26 ~~g~l~~~~~v~~--~~nptyl~~~~~~~~LY~v~~~~~~ggvaay~iD~~~G~Lt~ln~~~~~g~~p~-yvsvd~~g~~ 102 (346)
T COG2706 26 KTGELSLLQLVAE--LGNPTYLAVNPDQRHLYVVNEPGEEGGVAAYRIDPDDGRLTFLNRQTLPGSPPC-YVSVDEDGRF 102 (346)
T ss_pred cccccchhhhccc--cCCCceEEECCCCCEEEEEEecCCcCcEEEEEEcCCCCeEEEeeccccCCCCCe-EEEECCCCCE
Confidence 3455555566654 5899999999878899997654 555 677887798876643 234557 899999997
Q ss_pred EEEEeCCCcEEEEc---CCC-eEEE----cCCc---------CCcccEEEccCC-cEEEEeCCCCCCCccccccccccCC
Q 018474 107 VILCDNEKGLLKVT---EEG-VEAI----VPDA---------SFTNDVIAASDG-TLYFTVASTKYTPTDFYKDMAEGKP 168 (355)
Q Consensus 107 L~v~~~~~gl~~~~---~~g-~~~~----~~~~---------~~~~~l~~d~dG-~ly~~d~~~~~~~~~~~~~~~~~~~ 168 (355)
|+++....|.+.+. .+| +... .... ..+....++|+| .|+++|-.
T Consensus 103 vf~AnY~~g~v~v~p~~~dG~l~~~v~~~~h~g~~p~~rQ~~~h~H~a~~tP~~~~l~v~DLG----------------- 165 (346)
T COG2706 103 VFVANYHSGSVSVYPLQADGSLQPVVQVVKHTGSGPHERQESPHVHSANFTPDGRYLVVPDLG----------------- 165 (346)
T ss_pred EEEEEccCceEEEEEcccCCccccceeeeecCCCCCCccccCCccceeeeCCCCCEEEEeecC-----------------
Confidence 67777776755554 356 3221 1110 336667899999 56666654
Q ss_pred CCeEEEEeCCCCeEEEee----ccccccccEEEeCCCCEEEEEeCCCCeEEEEEeCCC--CCcceeEecccCC-CCc---
Q 018474 169 YGQLRKYDPKLKETTVLH----EGFYFANGIALSKNEDFVVVCESWKFRCRRYWLKGD--RAGILDAFIENLP-GGP--- 238 (355)
Q Consensus 169 ~g~l~~~dp~~~~~~~~~----~~~~~pngi~~~~dg~~l~v~~~~~~~i~~~~~~~~--~~~~~~~~~~~~~-g~p--- 238 (355)
..+++.|+.+.|+++... .....|.-|+|+|+++..|+.....+.|.++..++. +....+... .+| .+.
T Consensus 166 ~Dri~~y~~~dg~L~~~~~~~v~~G~GPRHi~FHpn~k~aY~v~EL~stV~v~~y~~~~g~~~~lQ~i~-tlP~dF~g~~ 244 (346)
T COG2706 166 TDRIFLYDLDDGKLTPADPAEVKPGAGPRHIVFHPNGKYAYLVNELNSTVDVLEYNPAVGKFEELQTID-TLPEDFTGTN 244 (346)
T ss_pred CceEEEEEcccCccccccccccCCCCCcceEEEcCCCcEEEEEeccCCEEEEEEEcCCCceEEEeeeec-cCccccCCCC
Confidence 456777766666665432 345678899999999999999999999999988763 222332221 222 111
Q ss_pred --CceEECCCCCEEEEeecCCchhhHhhhcchhHHHHHHhccchhhcccCCCCCCceEEEEEeCCCCeEEEE--EECCCC
Q 018474 239 --DNINLAPDGSFWIGLIKMNQTGVRAIQKCREKWELLDAYPGLISLLLPMGSDAGARVVKVDGNDGKIIRD--FNDPDA 314 (355)
Q Consensus 239 --~~i~~d~~G~lwv~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~g~~~~~--~~~~~g 314 (355)
..|.++++|++..+++.+.+. =.++++|+ ++..++. +....|
T Consensus 245 ~~aaIhis~dGrFLYasNRg~ds---------------------------------I~~f~V~~-~~g~L~~~~~~~teg 290 (346)
T COG2706 245 WAAAIHISPDGRFLYASNRGHDS---------------------------------IAVFSVDP-DGGKLELVGITPTEG 290 (346)
T ss_pred ceeEEEECCCCCEEEEecCCCCe---------------------------------EEEEEEcC-CCCEEEEEEEeccCC
Confidence 126789999987777664221 25888999 5443333 334445
Q ss_pred CcccceeEEEEeCCEEEEeecCCCeEEEeeCCCCCCCcC
Q 018474 315 TYISFVTSAAEFDGNLYLASLQSNFIGILPLDGPEPQLA 353 (355)
Q Consensus 315 ~~~~~~~~~~~~~g~L~v~~~~~~~i~~~~~~~~~~~~~ 353 (355)
. ++.-..+..+++.|++.+-.++.|.+|+.+..+-.|.
T Consensus 291 ~-~PR~F~i~~~g~~Liaa~q~sd~i~vf~~d~~TG~L~ 328 (346)
T COG2706 291 Q-FPRDFNINPSGRFLIAANQKSDNITVFERDKETGRLT 328 (346)
T ss_pred c-CCccceeCCCCCEEEEEccCCCcEEEEEEcCCCceEE
Confidence 3 4444445566788999999999999999988876654
No 12
>PLN02919 haloacid dehalogenase-like hydrolase family protein
Probab=99.60 E-value=3.9e-13 Score=140.39 Aligned_cols=186 Identities=16% Similarity=0.228 Sum_probs=133.3
Q ss_pred CCCCceEEEeeCCCeEEEEec-CCEEEEEEcCCCeeEEeecc-----------------CCCcccCeEECC-CCCEEEEe
Q 018474 51 VNHPEDVSVVVSKGALYTATR-DGWVKYFILHNETLVNWKHI-----------------DSQSLLGLTTTK-DGGVILCD 111 (355)
Q Consensus 51 ~~~p~~i~~d~~~g~l~~~~~-~g~i~~~~~~~g~~~~~~~~-----------------~~~p~~gl~~d~-~g~L~v~~ 111 (355)
+..|.+|+++++++.||++.. ++.|.++|..++....+... .+.|. ++++|+ +|+|||++
T Consensus 623 f~~P~GIavd~~gn~LYVaDt~n~~Ir~id~~~~~V~tlag~G~~g~~~~gg~~~~~~~ln~P~-gVa~dp~~g~LyVad 701 (1057)
T PLN02919 623 FNRPQGLAYNAKKNLLYVADTENHALREIDFVNETVRTLAGNGTKGSDYQGGKKGTSQVLNSPW-DVCFEPVNEKVYIAM 701 (1057)
T ss_pred cCCCcEEEEeCCCCEEEEEeCCCceEEEEecCCCEEEEEeccCcccCCCCCChhhhHhhcCCCe-EEEEecCCCeEEEEE
Confidence 567999999966777998765 67889999888876655321 23588 999998 78899998
Q ss_pred CCC-cEEEEcC-CC-eEEEcCC---------------cCCcccEEEccCCc-EEEEeCCCCCCCccccccccccCCCCeE
Q 018474 112 NEK-GLLKVTE-EG-VEAIVPD---------------ASFTNDVIAASDGT-LYFTVASTKYTPTDFYKDMAEGKPYGQL 172 (355)
Q Consensus 112 ~~~-gl~~~~~-~g-~~~~~~~---------------~~~~~~l~~d~dG~-ly~~d~~~~~~~~~~~~~~~~~~~~g~l 172 (355)
..+ .+++++. ++ +..+... ...|++++++++|. ||++|.. .++|
T Consensus 702 ~~~~~I~v~d~~~g~v~~~~G~G~~~~~~g~~~~~~~~~~P~GIavspdG~~LYVADs~-----------------n~~I 764 (1057)
T PLN02919 702 AGQHQIWEYNISDGVTRVFSGDGYERNLNGSSGTSTSFAQPSGISLSPDLKELYIADSE-----------------SSSI 764 (1057)
T ss_pred CCCCeEEEEECCCCeEEEEecCCccccCCCCccccccccCccEEEEeCCCCEEEEEECC-----------------CCeE
Confidence 764 4777774 56 5443211 15789999999985 9999875 4578
Q ss_pred EEEeCCCCeEEEeec----------------------cccccccEEEeCCCCEEEEEeCCCCeEEEEEeCCCCCcceeE-
Q 018474 173 RKYDPKLKETTVLHE----------------------GFYFANGIALSKNEDFVVVCESWKFRCRRYWLKGDRAGILDA- 229 (355)
Q Consensus 173 ~~~dp~~~~~~~~~~----------------------~~~~pngi~~~~dg~~l~v~~~~~~~i~~~~~~~~~~~~~~~- 229 (355)
.+||++++....+.. .+..|.|+++++||+ +||+++..++|.+|+.++......-.
T Consensus 765 rv~D~~tg~~~~~~gg~~~~~~~l~~fG~~dG~g~~~~l~~P~Gvavd~dG~-LYVADs~N~rIrviD~~tg~v~tiaG~ 843 (1057)
T PLN02919 765 RALDLKTGGSRLLAGGDPTFSDNLFKFGDHDGVGSEVLLQHPLGVLCAKDGQ-IYVADSYNHKIKKLDPATKRVTTLAGT 843 (1057)
T ss_pred EEEECCCCcEEEEEecccccCcccccccCCCCchhhhhccCCceeeEeCCCc-EEEEECCCCEEEEEECCCCeEEEEecc
Confidence 888877665443221 134689999999998 99999999999999986532211100
Q ss_pred ----ecc-----cCCCCcCceEECCCCCEEEEeec
Q 018474 230 ----FIE-----NLPGGPDNINLAPDGSFWIGLIK 255 (355)
Q Consensus 230 ----~~~-----~~~g~p~~i~~d~~G~lwv~~~~ 255 (355)
+.+ ..-..|.++++|++|++||++..
T Consensus 844 G~~G~~dG~~~~a~l~~P~GIavd~dG~lyVaDt~ 878 (1057)
T PLN02919 844 GKAGFKDGKALKAQLSEPAGLALGENGRLFVADTN 878 (1057)
T ss_pred CCcCCCCCcccccccCCceEEEEeCCCCEEEEECC
Confidence 000 00125889999999999999865
No 13
>PRK11028 6-phosphogluconolactonase; Provisional
Probab=99.58 E-value=5.3e-12 Score=116.80 Aligned_cols=255 Identities=13% Similarity=0.144 Sum_probs=157.8
Q ss_pred CcCccCceEecCCCCCCCceEEEeeCCCeEEEEec-CCEEEEEEcC-CCeeEEee--ccCCCcccCeEECCCCC-EEEEe
Q 018474 37 SSSMKGLTKLGEGCVNHPEDVSVVVSKGALYTATR-DGWVKYFILH-NETLVNWK--HIDSQSLLGLTTTKDGG-VILCD 111 (355)
Q Consensus 37 ~~~l~~~~~~~~~~~~~p~~i~~d~~~g~l~~~~~-~g~i~~~~~~-~g~~~~~~--~~~~~p~~gl~~d~~g~-L~v~~ 111 (355)
++.|.....+..+ ..|..+++++++..||++.. ++.|..++.. +|+++... ...+.|. +++++++|+ ||++.
T Consensus 22 ~g~l~~~~~~~~~--~~~~~l~~spd~~~lyv~~~~~~~i~~~~~~~~g~l~~~~~~~~~~~p~-~i~~~~~g~~l~v~~ 98 (330)
T PRK11028 22 EGALTLLQVVDVP--GQVQPMVISPDKRHLYVGVRPEFRVLSYRIADDGALTFAAESPLPGSPT-HISTDHQGRFLFSAS 98 (330)
T ss_pred CCceeeeeEEecC--CCCccEEECCCCCEEEEEECCCCcEEEEEECCCCceEEeeeecCCCCce-EEEECCCCCEEEEEE
Confidence 3455555666543 67999999987788999865 6778666653 55554332 2345688 999999987 77776
Q ss_pred CCCc-EEEEc--CCC-e-EEEc--CCcCCcccEEEccCC-cEEEEeCCCCCCCccccccccccCCCCeEEEEeCCC-CeE
Q 018474 112 NEKG-LLKVT--EEG-V-EAIV--PDASFTNDVIAASDG-TLYFTVASTKYTPTDFYKDMAEGKPYGQLRKYDPKL-KET 182 (355)
Q Consensus 112 ~~~g-l~~~~--~~g-~-~~~~--~~~~~~~~l~~d~dG-~ly~~d~~~~~~~~~~~~~~~~~~~~g~l~~~dp~~-~~~ 182 (355)
...+ +..++ .+| . +.+. .....|.+++++++| .+|+++.. .+.+..||.++ +.+
T Consensus 99 ~~~~~v~v~~~~~~g~~~~~~~~~~~~~~~~~~~~~p~g~~l~v~~~~-----------------~~~v~v~d~~~~g~l 161 (330)
T PRK11028 99 YNANCVSVSPLDKDGIPVAPIQIIEGLEGCHSANIDPDNRTLWVPCLK-----------------EDRIRLFTLSDDGHL 161 (330)
T ss_pred cCCCeEEEEEECCCCCCCCceeeccCCCcccEeEeCCCCCEEEEeeCC-----------------CCEEEEEEECCCCcc
Confidence 5444 44554 344 2 2221 112568889999998 57777654 45676676544 333
Q ss_pred EE------eeccccccccEEEeCCCCEEEEEeCCCCeEEEEEeCCC--CCcceeEec---cc--CCCCcCceEECCCCC-
Q 018474 183 TV------LHEGFYFANGIALSKNEDFVVVCESWKFRCRRYWLKGD--RAGILDAFI---EN--LPGGPDNINLAPDGS- 248 (355)
Q Consensus 183 ~~------~~~~~~~pngi~~~~dg~~l~v~~~~~~~i~~~~~~~~--~~~~~~~~~---~~--~~g~p~~i~~d~~G~- 248 (355)
.. -......|.+++++|||+++|+++...+.|..|+++.. .....+.+. .. .+..+..+.++++|+
T Consensus 162 ~~~~~~~~~~~~g~~p~~~~~~pdg~~lyv~~~~~~~v~v~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~i~~~pdg~~ 241 (330)
T PRK11028 162 VAQEPAEVTTVEGAGPRHMVFHPNQQYAYCVNELNSSVDVWQLKDPHGEIECVQTLDMMPADFSDTRWAADIHITPDGRH 241 (330)
T ss_pred cccCCCceecCCCCCCceEEECCCCCEEEEEecCCCEEEEEEEeCCCCCEEEEEEEecCCCcCCCCccceeEEECCCCCE
Confidence 21 11224568999999999999999988899999998632 221122111 00 112334588899997
Q ss_pred EEEEeecCCchhhHhhhcchhHHHHHHhccchhhcccCCCCCCceEEEEEeCCCCeEEEEEEC-CCCCcccceeEEE--E
Q 018474 249 FWIGLIKMNQTGVRAIQKCREKWELLDAYPGLISLLLPMGSDAGARVVKVDGNDGKIIRDFND-PDATYISFVTSAA--E 325 (355)
Q Consensus 249 lwv~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~g~~~~~~~~-~~g~~~~~~~~~~--~ 325 (355)
+|+++... ..-.++.+++ ++........ +.|. .+..+. .
T Consensus 242 lyv~~~~~----------------------------------~~I~v~~i~~-~~~~~~~~~~~~~~~---~p~~~~~~~ 283 (330)
T PRK11028 242 LYACDRTA----------------------------------SLISVFSVSE-DGSVLSFEGHQPTET---QPRGFNIDH 283 (330)
T ss_pred EEEecCCC----------------------------------CeEEEEEEeC-CCCeEEEeEEEeccc---cCCceEECC
Confidence 66664321 1124667777 5543332221 1221 122233 4
Q ss_pred eCCEEEEeecCCCeEEEeeCCCCC
Q 018474 326 FDGNLYLASLQSNFIGILPLDGPE 349 (355)
Q Consensus 326 ~~g~L~v~~~~~~~i~~~~~~~~~ 349 (355)
++.+||+++..++.|.+++++...
T Consensus 284 dg~~l~va~~~~~~v~v~~~~~~~ 307 (330)
T PRK11028 284 SGKYLIAAGQKSHHISVYEIDGET 307 (330)
T ss_pred CCCEEEEEEccCCcEEEEEEcCCC
Confidence 568899999889999999987554
No 14
>PF10282 Lactonase: Lactonase, 7-bladed beta-propeller; InterPro: IPR019405 6-phosphogluconolactonases (6PGL) 3.1.1.31 from EC, which hydrolyses 6-phosphogluconolactone to 6-phosphogluconate is opne of the enzymes in the pentose phosphate pathway. Two families of structurally dissimilar 6PGLs are known to exist: the Escherichia coli (strain K12) YbhE IPR022528 from INTERPRO [] and the Pseudomonas aeruginosa DevB IPR005900 from INTERPRO [] types. This entry contains bacterial 6-phosphogluconolactonases (6PGL) YbhE-type 3.1.1.31 from EC which hydrolyse 6-phosphogluconolactone to 6-phosphogluconate. The entry also contains the fungal muconate lactonizing enzyme carboxy-cis,cis-muconate cyclase 5.5.1.5 from EC and muconate cycloisomerase 5.5.1.1 from EC, which convert cis,cis-muconates to muconolactones and vice versa as part of the microbial beta-ketoadipate pathway. Structures have been reported for the E. coli 6-phosphogluconolactonase and Neurospora crassa muconate cycloisomerase. Structures of proteins in this family have revealed a 7-bladed beta-propeller fold [].; PDB: 3SCY_A 1L0Q_A 3HFQ_B 3FGB_A 1RI6_A 3U4Y_A 3BWS_A 1JOF_H.
Probab=99.52 E-value=1.2e-11 Score=115.11 Aligned_cols=199 Identities=19% Similarity=0.226 Sum_probs=130.0
Q ss_pred cCccCceEecCCCCCCCceEEEeeCCCeEEEEec-CCEEEEEEcCC-CeeEEee--------------ccCCCcccCeEE
Q 018474 38 SSMKGLTKLGEGCVNHPEDVSVVVSKGALYTATR-DGWVKYFILHN-ETLVNWK--------------HIDSQSLLGLTT 101 (355)
Q Consensus 38 ~~l~~~~~~~~~~~~~p~~i~~d~~~g~l~~~~~-~g~i~~~~~~~-g~~~~~~--------------~~~~~p~~gl~~ 101 (355)
+.|+....+... ...|..++++++++.||++.+ +|.+..++..+ |++.... ....+|+ .+.+
T Consensus 74 g~L~~~~~~~~~-g~~p~~i~~~~~g~~l~vany~~g~v~v~~l~~~g~l~~~~~~~~~~g~g~~~~rq~~~h~H-~v~~ 151 (345)
T PF10282_consen 74 GTLTLLNSVPSG-GSSPCHIAVDPDGRFLYVANYGGGSVSVFPLDDDGSLGEVVQTVRHEGSGPNPDRQEGPHPH-QVVF 151 (345)
T ss_dssp TEEEEEEEEEES-SSCEEEEEECTTSSEEEEEETTTTEEEEEEECTTSEEEEEEEEEESEEEESSTTTTSSTCEE-EEEE
T ss_pred ceeEEeeeeccC-CCCcEEEEEecCCCEEEEEEccCCeEEEEEccCCcccceeeeecccCCCCCcccccccccce-eEEE
Confidence 455555555532 478999999988899999987 68887777643 6543321 1235688 8999
Q ss_pred CCCCC-EEEEeCC-CcEEEEc--C-CC-eEE---Ec-CCcCCcccEEEccCC-cEEEEeCCCCCCCccccccccccCCCC
Q 018474 102 TKDGG-VILCDNE-KGLLKVT--E-EG-VEA---IV-PDASFTNDVIAASDG-TLYFTVASTKYTPTDFYKDMAEGKPYG 170 (355)
Q Consensus 102 d~~g~-L~v~~~~-~gl~~~~--~-~g-~~~---~~-~~~~~~~~l~~d~dG-~ly~~d~~~~~~~~~~~~~~~~~~~~g 170 (355)
+++|+ +||++.+ +.++.++ . .+ ++. +. .....|++++++++| .+|+.+.. ...-
T Consensus 152 ~pdg~~v~v~dlG~D~v~~~~~~~~~~~l~~~~~~~~~~G~GPRh~~f~pdg~~~Yv~~e~---------------s~~v 216 (345)
T PF10282_consen 152 SPDGRFVYVPDLGADRVYVYDIDDDTGKLTPVDSIKVPPGSGPRHLAFSPDGKYAYVVNEL---------------SNTV 216 (345)
T ss_dssp -TTSSEEEEEETTTTEEEEEEE-TTS-TEEEEEEEECSTTSSEEEEEE-TTSSEEEEEETT---------------TTEE
T ss_pred CCCCCEEEEEecCCCEEEEEEEeCCCceEEEeeccccccCCCCcEEEEcCCcCEEEEecCC---------------CCcE
Confidence 99986 8888866 3455555 3 33 433 21 122889999999998 68888654 2233
Q ss_pred eEEEEeCCCCeEEEeec------c---ccccccEEEeCCCCEEEEEeCCCCeEEEEEeCCC--CCcceeEecccCCCCcC
Q 018474 171 QLRKYDPKLKETTVLHE------G---FYFANGIALSKNEDFVVVCESWKFRCRRYWLKGD--RAGILDAFIENLPGGPD 239 (355)
Q Consensus 171 ~l~~~dp~~~~~~~~~~------~---~~~pngi~~~~dg~~l~v~~~~~~~i~~~~~~~~--~~~~~~~~~~~~~g~p~ 239 (355)
.++.+++.+++++.... + ...|.+|+++|||++||+++...+.|..|+++.. .+.....+ ......|+
T Consensus 217 ~v~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~i~ispdg~~lyvsnr~~~sI~vf~~d~~~g~l~~~~~~-~~~G~~Pr 295 (345)
T PF10282_consen 217 SVFDYDPSDGSLTEIQTISTLPEGFTGENAPAEIAISPDGRFLYVSNRGSNSISVFDLDPATGTLTLVQTV-PTGGKFPR 295 (345)
T ss_dssp EEEEEETTTTEEEEEEEEESCETTSCSSSSEEEEEE-TTSSEEEEEECTTTEEEEEEECTTTTTEEEEEEE-EESSSSEE
T ss_pred EEEeecccCCceeEEEEeeeccccccccCCceeEEEecCCCEEEEEeccCCEEEEEEEecCCCceEEEEEE-eCCCCCcc
Confidence 46667766776655421 1 1257789999999999999999999999999532 23222222 12234699
Q ss_pred ceEECCCCC-EEEEee
Q 018474 240 NINLAPDGS-FWIGLI 254 (355)
Q Consensus 240 ~i~~d~~G~-lwv~~~ 254 (355)
++.+|++|+ +||+..
T Consensus 296 ~~~~s~~g~~l~Va~~ 311 (345)
T PF10282_consen 296 HFAFSPDGRYLYVANQ 311 (345)
T ss_dssp EEEE-TTSSEEEEEET
T ss_pred EEEEeCCCCEEEEEec
Confidence 999999998 555553
No 15
>COG2706 3-carboxymuconate cyclase [Carbohydrate transport and metabolism]
Probab=99.48 E-value=5.2e-11 Score=105.63 Aligned_cols=224 Identities=17% Similarity=0.220 Sum_probs=148.6
Q ss_pred CCcCccCceEecCCCCCCCceEEEeeCCCeEEEEecC-CEEEEEEc-CCCeeEEe----eccC---------CCcccCeE
Q 018474 36 ESSSMKGLTKLGEGCVNHPEDVSVVVSKGALYTATRD-GWVKYFIL-HNETLVNW----KHID---------SQSLLGLT 100 (355)
Q Consensus 36 ~~~~l~~~~~~~~~~~~~p~~i~~d~~~g~l~~~~~~-g~i~~~~~-~~g~~~~~----~~~~---------~~p~~gl~ 100 (355)
.+++|+.+.+.... ...|..+++|+++..+|++.+. |.|.++-. ++|.+... .+.+ .+++ ...
T Consensus 74 ~~G~Lt~ln~~~~~-g~~p~yvsvd~~g~~vf~AnY~~g~v~v~p~~~dG~l~~~v~~~~h~g~~p~~rQ~~~h~H-~a~ 151 (346)
T COG2706 74 DDGRLTFLNRQTLP-GSPPCYVSVDEDGRFVFVANYHSGSVSVYPLQADGSLQPVVQVVKHTGSGPHERQESPHVH-SAN 151 (346)
T ss_pred CCCeEEEeeccccC-CCCCeEEEECCCCCEEEEEEccCceEEEEEcccCCccccceeeeecCCCCCCccccCCccc-eee
Confidence 44677777655543 3678999999777789999885 54444433 24543322 2222 1255 666
Q ss_pred ECCCCC-EEEEeCC-CcEEEEc-CCC-eEEEc----CCcCCcccEEEccCCc-EEEEeCCCCCCCccccccccccCCCCe
Q 018474 101 TTKDGG-VILCDNE-KGLLKVT-EEG-VEAIV----PDASFTNDVIAASDGT-LYFTVASTKYTPTDFYKDMAEGKPYGQ 171 (355)
Q Consensus 101 ~d~~g~-L~v~~~~-~gl~~~~-~~g-~~~~~----~~~~~~~~l~~d~dG~-ly~~d~~~~~~~~~~~~~~~~~~~~g~ 171 (355)
++++|+ |++.+-+ +.++.|+ .+| ++... .+...|++|++.|+|. .|+... ...+..
T Consensus 152 ~tP~~~~l~v~DLG~Dri~~y~~~dg~L~~~~~~~v~~G~GPRHi~FHpn~k~aY~v~E---------------L~stV~ 216 (346)
T COG2706 152 FTPDGRYLVVPDLGTDRIFLYDLDDGKLTPADPAEVKPGAGPRHIVFHPNGKYAYLVNE---------------LNSTVD 216 (346)
T ss_pred eCCCCCEEEEeecCCceEEEEEcccCccccccccccCCCCCcceEEEcCCCcEEEEEec---------------cCCEEE
Confidence 889996 5666654 4566666 466 43322 2228999999999994 666543 334556
Q ss_pred EEEEeCCCCeEEEeeccc---------cccccEEEeCCCCEEEEEeCCCCeEEEEEeCCCCCcceeEecc--cCCC-CcC
Q 018474 172 LRKYDPKLKETTVLHEGF---------YFANGIALSKNEDFVVVCESWKFRCRRYWLKGDRAGILDAFIE--NLPG-GPD 239 (355)
Q Consensus 172 l~~~dp~~~~~~~~~~~~---------~~pngi~~~~dg~~l~v~~~~~~~i~~~~~~~~~~~~~~~~~~--~~~g-~p~ 239 (355)
++.||+..++++.++.-. .....|.+++||++||+++.+.+.|+.|.++... +..+ +.. ...| .|+
T Consensus 217 v~~y~~~~g~~~~lQ~i~tlP~dF~g~~~~aaIhis~dGrFLYasNRg~dsI~~f~V~~~~-g~L~-~~~~~~teg~~PR 294 (346)
T COG2706 217 VLEYNPAVGKFEELQTIDTLPEDFTGTNWAAAIHISPDGRFLYASNRGHDSIAVFSVDPDG-GKLE-LVGITPTEGQFPR 294 (346)
T ss_pred EEEEcCCCceEEEeeeeccCccccCCCCceeEEEECCCCCEEEEecCCCCeEEEEEEcCCC-CEEE-EEEEeccCCcCCc
Confidence 888999888888775322 2234588999999999999999999999985421 1221 221 2234 499
Q ss_pred ceEECCCCCEEEEeecCCchhhHhhhcchhHHHHHHhccchhhcccCCCCCCceEEEEEeCCCCeEEEEEEC
Q 018474 240 NINLAPDGSFWIGLIKMNQTGVRAIQKCREKWELLDAYPGLISLLLPMGSDAGARVVKVDGNDGKIIRDFND 311 (355)
Q Consensus 240 ~i~~d~~G~lwv~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~g~~~~~~~~ 311 (355)
.+.+++.|++.++.++. +..-.|++.|+++|+.......
T Consensus 295 ~F~i~~~g~~Liaa~q~---------------------------------sd~i~vf~~d~~TG~L~~~~~~ 333 (346)
T COG2706 295 DFNINPSGRFLIAANQK---------------------------------SDNITVFERDKETGRLTLLGRY 333 (346)
T ss_pred cceeCCCCCEEEEEccC---------------------------------CCcEEEEEEcCCCceEEecccc
Confidence 99999999999998873 3334688889978887655543
No 16
>TIGR02604 Piru_Ver_Nterm putative membrane-bound dehydrogenase domain. All proteins that score above the trusted cutoff score of 45 to this model are large proteins of either Pirellula sp. 1 or Verrucomicrobium spinosum. These proteins all contain, in addition to this domain, several hundred residues of highly variable sequence, and then a well-conserved C-terminal domain (TIGR02603) that features a putative cytochrome c-type heme binding motif CXXCH. The membrane-bound L-sorbosone dehydrogenase from Acetobacter liquefaciens (Gluconacetobacter liquefaciens) is homologous to this domain but lacks additional sequence regions shared by members of this family and belongs to a different clade of the larger family of homologs. It and its closely related homologs are excluded from the this model by scoring between the trusted (45) and noise (18) cutoffs.
Probab=99.37 E-value=5.9e-11 Score=111.26 Aligned_cols=165 Identities=20% Similarity=0.211 Sum_probs=115.3
Q ss_pred CCCCCCceEEEeeCCCeEEEEec------------CC-EEEEEEcCC--Ce---eEEeeccCCCcccCeEECCCCCEEEE
Q 018474 49 GCVNHPEDVSVVVSKGALYTATR------------DG-WVKYFILHN--ET---LVNWKHIDSQSLLGLTTTKDGGVILC 110 (355)
Q Consensus 49 ~~~~~p~~i~~d~~~g~l~~~~~------------~g-~i~~~~~~~--g~---~~~~~~~~~~p~~gl~~d~~g~L~v~ 110 (355)
..+..|..|++| ..|+||++.. .+ +|++++..+ |+ .+.+......|. ||++.++| |||+
T Consensus 11 p~~~~P~~ia~d-~~G~l~V~e~~~y~~~~~~~~~~~~rI~~l~d~dgdG~~d~~~vfa~~l~~p~-Gi~~~~~G-lyV~ 87 (367)
T TIGR02604 11 PLLRNPIAVCFD-ERGRLWVAEGITYSRPAGRQGPLGDRILILEDADGDGKYDKSNVFAEELSMVT-GLAVAVGG-VYVA 87 (367)
T ss_pred CccCCCceeeEC-CCCCEEEEeCCcCCCCCCCCCCCCCEEEEEEcCCCCCCcceeEEeecCCCCcc-ceeEecCC-EEEe
Confidence 357899999999 7888999852 23 898887643 43 456666566799 99999888 9998
Q ss_pred eCCCcEEEEc-C--CC-----eEEEcCCc--------CCcccEEEccCCcEEEEeCCCC--CCCccccccccccCCCCeE
Q 018474 111 DNEKGLLKVT-E--EG-----VEAIVPDA--------SFTNDVIAASDGTLYFTVASTK--YTPTDFYKDMAEGKPYGQL 172 (355)
Q Consensus 111 ~~~~gl~~~~-~--~g-----~~~~~~~~--------~~~~~l~~d~dG~ly~~d~~~~--~~~~~~~~~~~~~~~~g~l 172 (355)
+. ..|+++. . ++ .+.+.... ..++++++++||.||+++.... +..........+....+++
T Consensus 88 ~~-~~i~~~~d~~gdg~ad~~~~~l~~~~~~~~~~~~~~~~~l~~gpDG~LYv~~G~~~~~~~~~~~~~~~~~~~~~g~i 166 (367)
T TIGR02604 88 TP-PDILFLRDKDGDDKADGEREVLLSGFGGQINNHHHSLNSLAWGPDGWLYFNHGNTLASKVTRPGTSDESRQGLGGGL 166 (367)
T ss_pred CC-CeEEEEeCCCCCCCCCCccEEEEEccCCCCCcccccccCceECCCCCEEEecccCCCceeccCCCccCcccccCceE
Confidence 74 4688883 2 22 23333221 4488999999999999886421 1000000011111235789
Q ss_pred EEEeCCCCeEEEeeccccccccEEEeCCCCEEEEEeCCCCeEEEEE
Q 018474 173 RKYDPKLKETTVLHEGFYFANGIALSKNEDFVVVCESWKFRCRRYW 218 (355)
Q Consensus 173 ~~~dp~~~~~~~~~~~~~~pngi~~~~dg~~l~v~~~~~~~i~~~~ 218 (355)
++++|++++++.+..++.+|+|++++++|+ +|+++.......++.
T Consensus 167 ~r~~pdg~~~e~~a~G~rnp~Gl~~d~~G~-l~~tdn~~~~~~~i~ 211 (367)
T TIGR02604 167 FRYNPDGGKLRVVAHGFQNPYGHSVDSWGD-VFFCDNDDPPLCRVT 211 (367)
T ss_pred EEEecCCCeEEEEecCcCCCccceECCCCC-EEEEccCCCceeEEc
Confidence 999999999999999999999999999998 788887555555443
No 17
>PRK11028 6-phosphogluconolactonase; Provisional
Probab=99.33 E-value=2.7e-09 Score=98.76 Aligned_cols=183 Identities=11% Similarity=0.088 Sum_probs=115.5
Q ss_pred CCCceEEEeeCCCeEEEEec-CCEEEEEEcC-CCeeE-Ee--eccCCCcccCeEECCCCC-EEEEeCCCc-EEEEc--CC
Q 018474 52 NHPEDVSVVVSKGALYTATR-DGWVKYFILH-NETLV-NW--KHIDSQSLLGLTTTKDGG-VILCDNEKG-LLKVT--EE 122 (355)
Q Consensus 52 ~~p~~i~~d~~~g~l~~~~~-~g~i~~~~~~-~g~~~-~~--~~~~~~p~~gl~~d~~g~-L~v~~~~~g-l~~~~--~~ 122 (355)
..|..++++++++.+|++.. ++.|..++.. ++... .. ......|+ +++++++|+ +|+++...+ +..++ ..
T Consensus 80 ~~p~~i~~~~~g~~l~v~~~~~~~v~v~~~~~~g~~~~~~~~~~~~~~~~-~~~~~p~g~~l~v~~~~~~~v~v~d~~~~ 158 (330)
T PRK11028 80 GSPTHISTDHQGRFLFSASYNANCVSVSPLDKDGIPVAPIQIIEGLEGCH-SANIDPDNRTLWVPCLKEDRIRLFTLSDD 158 (330)
T ss_pred CCceEEEECCCCCEEEEEEcCCCeEEEEEECCCCCCCCceeeccCCCccc-EeEeCCCCCEEEEeeCCCCEEEEEEECCC
Confidence 47999999988888998875 6788888774 33221 11 11224588 899999885 778876644 55555 23
Q ss_pred C-eEE-----Ec-CCcCCcccEEEccCC-cEEEEeCCCCCCCccccccccccCCCCeE--EEEeCCCCeEEEeecc----
Q 018474 123 G-VEA-----IV-PDASFTNDVIAASDG-TLYFTVASTKYTPTDFYKDMAEGKPYGQL--RKYDPKLKETTVLHEG---- 188 (355)
Q Consensus 123 g-~~~-----~~-~~~~~~~~l~~d~dG-~ly~~d~~~~~~~~~~~~~~~~~~~~g~l--~~~dp~~~~~~~~~~~---- 188 (355)
| ++. .. .....|++++++++| .+|+++.. .+.+ |.+++.+++++....-
T Consensus 159 g~l~~~~~~~~~~~~g~~p~~~~~~pdg~~lyv~~~~-----------------~~~v~v~~~~~~~~~~~~~~~~~~~p 221 (330)
T PRK11028 159 GHLVAQEPAEVTTVEGAGPRHMVFHPNQQYAYCVNEL-----------------NSSVDVWQLKDPHGEIECVQTLDMMP 221 (330)
T ss_pred CcccccCCCceecCCCCCCceEEECCCCCEEEEEecC-----------------CCEEEEEEEeCCCCCEEEEEEEecCC
Confidence 4 321 11 112679999999998 57887653 2344 4455444554433211
Q ss_pred -----ccccccEEEeCCCCEEEEEeCCCCeEEEEEeCCCC-CcceeEecccCCCCcCceEECCCCC-EEEEe
Q 018474 189 -----FYFANGIALSKNEDFVVVCESWKFRCRRYWLKGDR-AGILDAFIENLPGGPDNINLAPDGS-FWIGL 253 (355)
Q Consensus 189 -----~~~pngi~~~~dg~~l~v~~~~~~~i~~~~~~~~~-~~~~~~~~~~~~g~p~~i~~d~~G~-lwv~~ 253 (355)
...+.+++++||++++|+++...+.|..|+++... ..+..... .....|.++.++++|+ +|++.
T Consensus 222 ~~~~~~~~~~~i~~~pdg~~lyv~~~~~~~I~v~~i~~~~~~~~~~~~~-~~~~~p~~~~~~~dg~~l~va~ 292 (330)
T PRK11028 222 ADFSDTRWAADIHITPDGRHLYACDRTASLISVFSVSEDGSVLSFEGHQ-PTETQPRGFNIDHSGKYLIAAG 292 (330)
T ss_pred CcCCCCccceeEEECCCCCEEEEecCCCCeEEEEEEeCCCCeEEEeEEE-eccccCCceEECCCCCEEEEEE
Confidence 12344689999999999998888899999885321 11111111 1123589999999996 55554
No 18
>COG3292 Predicted periplasmic ligand-binding sensor domain [Signal transduction mechanisms]
Probab=99.29 E-value=1.5e-10 Score=108.21 Aligned_cols=141 Identities=16% Similarity=0.172 Sum_probs=96.5
Q ss_pred CCceEEEeeCCCeEEEEecCCEEEEEEcCCCeeEEeeccCC--CcccCeEECCCCCEEEEeCCCcEEEEcCCC--eEEEc
Q 018474 53 HPEDVSVVVSKGALYTATRDGWVKYFILHNETLVNWKHIDS--QSLLGLTTTKDGGVILCDNEKGLLKVTEEG--VEAIV 128 (355)
Q Consensus 53 ~p~~i~~d~~~g~l~~~~~~g~i~~~~~~~g~~~~~~~~~~--~p~~gl~~d~~g~L~v~~~~~gl~~~~~~g--~~~~~ 128 (355)
.--.++.| ..|.+|+++.+| +++||..+++..+...... .++ .+..|..|+|||++. +|++.+++.| ..-..
T Consensus 166 ~V~aLv~D-~~g~lWvgT~dG-L~~fd~~~gkalql~s~~~dk~I~-al~~d~qg~LWVGTd-qGv~~~e~~G~~~sn~~ 241 (671)
T COG3292 166 PVVALVFD-ANGRLWVGTPDG-LSYFDAGRGKALQLASPPLDKAIN-ALIADVQGRLWVGTD-QGVYLQEAEGWRASNWG 241 (671)
T ss_pred cceeeeee-ccCcEEEecCCc-ceEEccccceEEEcCCCcchhhHH-HHHHHhcCcEEEEec-cceEEEchhhccccccC
Confidence 34567888 788999999888 9999999998876644322 356 788899999999995 5999998766 33322
Q ss_pred CCc--CCcccEEEccCCcEEEEeCCCCCCCccccccccccCCCCeEEEEeCCCCeEEEe----eccccccccEEEeCCCC
Q 018474 129 PDA--SFTNDVIAASDGTLYFTVASTKYTPTDFYKDMAEGKPYGQLRKYDPKLKETTVL----HEGFYFANGIALSKNED 202 (355)
Q Consensus 129 ~~~--~~~~~l~~d~dG~ly~~d~~~~~~~~~~~~~~~~~~~~g~l~~~dp~~~~~~~~----~~~~~~pngi~~~~dg~ 202 (355)
... ..+..+..|.+|.+|+++.. ++.++......+... ..+.+..|++..+.||.
T Consensus 242 ~~lp~~~I~ll~qD~qG~lWiGTen-------------------Gl~r~~l~rq~Lq~~~~~~~l~~S~vnsL~~D~dGs 302 (671)
T COG3292 242 PMLPSGNILLLVQDAQGELWIGTEN-------------------GLWRTRLPRQGLQIPLSKMHLGVSTVNSLWLDTDGS 302 (671)
T ss_pred CCCcchheeeeecccCCCEEEeecc-------------------cceeEecCCCCccccccccCCccccccceeeccCCC
Confidence 221 56777788899999998653 355554333332211 12234457788888887
Q ss_pred EEEEEeCCCCeEEEEEe
Q 018474 203 FVVVCESWKFRCRRYWL 219 (355)
Q Consensus 203 ~l~v~~~~~~~i~~~~~ 219 (355)
+|+.. .+++++|..
T Consensus 303 -LWv~t--~~giv~~~~ 316 (671)
T COG3292 303 -LWVGT--YGGIVRYLT 316 (671)
T ss_pred -Eeeec--cCceEEEec
Confidence 77764 356777764
No 19
>TIGR03866 PQQ_ABC_repeats PQQ-dependent catabolism-associated beta-propeller protein. Members of this protein family consist of seven repeats each of the YVTN family beta-propeller repeat (see TIGR02276). Members occur invariably as part of a transport operon that is associated with PQQ-dependent catabolism of alcohols such as phenylethanol.
Probab=99.28 E-value=3.3e-08 Score=89.36 Aligned_cols=239 Identities=12% Similarity=0.057 Sum_probs=148.3
Q ss_pred CCCceEEEeeCCCeEEEE-ecCCEEEEEEcCCCeeEEeeccCCCcccCeEECCCCC-EEEEeCC-CcEEEEcC-CC--eE
Q 018474 52 NHPEDVSVVVSKGALYTA-TRDGWVKYFILHNETLVNWKHIDSQSLLGLTTTKDGG-VILCDNE-KGLLKVTE-EG--VE 125 (355)
Q Consensus 52 ~~p~~i~~d~~~g~l~~~-~~~g~i~~~~~~~g~~~~~~~~~~~p~~gl~~d~~g~-L~v~~~~-~gl~~~~~-~g--~~ 125 (355)
..|.+++++++++.+|++ ..++.|..+|..+++..........+. .++++++|+ +|++... +.+..++. ++ +.
T Consensus 31 ~~~~~l~~~~dg~~l~~~~~~~~~v~~~d~~~~~~~~~~~~~~~~~-~~~~~~~g~~l~~~~~~~~~l~~~d~~~~~~~~ 109 (300)
T TIGR03866 31 QRPRGITLSKDGKLLYVCASDSDTIQVIDLATGEVIGTLPSGPDPE-LFALHPNGKILYIANEDDNLVTVIDIETRKVLA 109 (300)
T ss_pred CCCCceEECCCCCEEEEEECCCCeEEEEECCCCcEEEeccCCCCcc-EEEECCCCCEEEEEcCCCCeEEEEECCCCeEEe
Confidence 457889999766778765 457889999988877654333334567 788988887 6666543 34666673 44 33
Q ss_pred EEcCCcCCcccEEEccCCcEEEEeCCCCCCCccccccccccCCCCeEEEEeCCCCeEEEeeccccccccEEEeCCCCEEE
Q 018474 126 AIVPDASFTNDVIAASDGTLYFTVASTKYTPTDFYKDMAEGKPYGQLRKYDPKLKETTVLHEGFYFANGIALSKNEDFVV 205 (355)
Q Consensus 126 ~~~~~~~~~~~l~~d~dG~ly~~d~~~~~~~~~~~~~~~~~~~~g~l~~~dp~~~~~~~~~~~~~~pngi~~~~dg~~l~ 205 (355)
.+... ..+.+++++++|.++++.... ...+..||.++++..........|..+++++|++.++
T Consensus 110 ~~~~~-~~~~~~~~~~dg~~l~~~~~~----------------~~~~~~~d~~~~~~~~~~~~~~~~~~~~~s~dg~~l~ 172 (300)
T TIGR03866 110 EIPVG-VEPEGMAVSPDGKIVVNTSET----------------TNMAHFIDTKTYEIVDNVLVDQRPRFAEFTADGKELW 172 (300)
T ss_pred EeeCC-CCcceEEECCCCCEEEEEecC----------------CCeEEEEeCCCCeEEEEEEcCCCccEEEECCCCCEEE
Confidence 33322 457889999999776654320 1235567877665533222234578899999999888
Q ss_pred EEeCCCCeEEEEEeCCCCC-cceeEeccc---CCCCcCceEECCCCCE-EEEeecCCchhhHhhhcchhHHHHHHhccch
Q 018474 206 VCESWKFRCRRYWLKGDRA-GILDAFIEN---LPGGPDNINLAPDGSF-WIGLIKMNQTGVRAIQKCREKWELLDAYPGL 280 (355)
Q Consensus 206 v~~~~~~~i~~~~~~~~~~-~~~~~~~~~---~~g~p~~i~~d~~G~l-wv~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 280 (355)
++....+.|..|+++..+. .....-... ....|.++.++++|+. |++....
T Consensus 173 ~~~~~~~~v~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~i~~s~dg~~~~~~~~~~------------------------ 228 (300)
T TIGR03866 173 VSSEIGGTVSVIDVATRKVIKKITFEIPGVHPEAVQPVGIKLTKDGKTAFVALGPA------------------------ 228 (300)
T ss_pred EEcCCCCEEEEEEcCcceeeeeeeecccccccccCCccceEECCCCCEEEEEcCCC------------------------
Confidence 8766678899999864321 111100000 1113567888999975 6655321
Q ss_pred hhcccCCCCCCceEEEEEeCCCCeEEEEEECCCCCcccceeEEEE--eCCEEEEeecCCCeEEEeeCCCCC
Q 018474 281 ISLLLPMGSDAGARVVKVDGNDGKIIRDFNDPDATYISFVTSAAE--FDGNLYLASLQSNFIGILPLDGPE 349 (355)
Q Consensus 281 ~~~~~~~~~~~~~~v~~~~~~~g~~~~~~~~~~g~~~~~~~~~~~--~~g~L~v~~~~~~~i~~~~~~~~~ 349 (355)
..+..+|.++++....+.. .+ .+..+.. ++..||+++..++.|.++++.+..
T Consensus 229 ------------~~i~v~d~~~~~~~~~~~~-~~----~~~~~~~~~~g~~l~~~~~~~~~i~v~d~~~~~ 282 (300)
T TIGR03866 229 ------------NRVAVVDAKTYEVLDYLLV-GQ----RVWQLAFTPDEKYLLTTNGVSNDVSVIDVAALK 282 (300)
T ss_pred ------------CeEEEEECCCCcEEEEEEe-CC----CcceEEECCCCCEEEEEcCCCCeEEEEECCCCc
Confidence 2477778756666554432 11 1223333 446677776667889998887654
No 20
>COG3386 Gluconolactonase [Carbohydrate transport and metabolism]
Probab=99.28 E-value=5.3e-10 Score=101.12 Aligned_cols=177 Identities=20% Similarity=0.306 Sum_probs=118.0
Q ss_pred CCceEEEeeCCCeEEEEecCCEEEEEEcCCCee-EEeecc-----CCCcccCeEECCCCCEEEEeCC-----C------c
Q 018474 53 HPEDVSVVVSKGALYTATRDGWVKYFILHNETL-VNWKHI-----DSQSLLGLTTTKDGGVILCDNE-----K------G 115 (355)
Q Consensus 53 ~p~~i~~d~~~g~l~~~~~~g~i~~~~~~~g~~-~~~~~~-----~~~p~~gl~~d~~g~L~v~~~~-----~------g 115 (355)
.+.....+ .++.|++.... +++++++++.. +.+... .++++ -...|++|++|+++.. . |
T Consensus 68 ~~~~~~~d-~~g~Lv~~~~g--~~~~~~~~~~~~t~~~~~~~~~~~~r~N-D~~v~pdG~~wfgt~~~~~~~~~~~~~~G 143 (307)
T COG3386 68 FSSGALID-AGGRLIACEHG--VRLLDPDTGGKITLLAEPEDGLPLNRPN-DGVVDPDGRIWFGDMGYFDLGKSEERPTG 143 (307)
T ss_pred cccceeec-CCCeEEEEccc--cEEEeccCCceeEEeccccCCCCcCCCC-ceeEcCCCCEEEeCCCccccCccccCCcc
Confidence 35666666 66766665433 55666555555 444332 25788 8999999999999877 2 2
Q ss_pred -EEEEcCCC-eEE-EcCCcCCcccEEEccCC-cEEEEeCCCCCCCccccccccccCCCCeEEEEeCC--CCeE----EEe
Q 018474 116 -LLKVTEEG-VEA-IVPDASFTNDVIAASDG-TLYFTVASTKYTPTDFYKDMAEGKPYGQLRKYDPK--LKET----TVL 185 (355)
Q Consensus 116 -l~~~~~~g-~~~-~~~~~~~~~~l~~d~dG-~ly~~d~~~~~~~~~~~~~~~~~~~~g~l~~~dp~--~~~~----~~~ 185 (355)
+|++++.| .+. +......+|+|+++||| ++|++|+. .+.+++|+-+ ++.. ..+
T Consensus 144 ~lyr~~p~g~~~~l~~~~~~~~NGla~SpDg~tly~aDT~-----------------~~~i~r~~~d~~~g~~~~~~~~~ 206 (307)
T COG3386 144 SLYRVDPDGGVVRLLDDDLTIPNGLAFSPDGKTLYVADTP-----------------ANRIHRYDLDPATGPIGGRRGFV 206 (307)
T ss_pred eEEEEcCCCCEEEeecCcEEecCceEECCCCCEEEEEeCC-----------------CCeEEEEecCcccCccCCcceEE
Confidence 99999766 444 44446899999999999 89999976 4467666432 1211 111
Q ss_pred e--ccccccccEEEeCCCCEEEEEeCC-CCeEEEEEeCCCCCcceeEecccCC-CCcCceEECC-C-CCEEEEeecC
Q 018474 186 H--EGFYFANGIALSKNEDFVVVCESW-KFRCRRYWLKGDRAGILDAFIENLP-GGPDNINLAP-D-GSFWIGLIKM 256 (355)
Q Consensus 186 ~--~~~~~pngi~~~~dg~~l~v~~~~-~~~i~~~~~~~~~~~~~~~~~~~~~-g~p~~i~~d~-~-G~lwv~~~~~ 256 (355)
. .....|.|++++.||. +|++... ..+|.+|+.+|...+..+ +| ..|.+.++-. + ..|||++...
T Consensus 207 ~~~~~~G~PDG~~vDadG~-lw~~a~~~g~~v~~~~pdG~l~~~i~-----lP~~~~t~~~FgG~~~~~L~iTs~~~ 277 (307)
T COG3386 207 DFDEEPGLPDGMAVDADGN-LWVAAVWGGGRVVRFNPDGKLLGEIK-----LPVKRPTNPAFGGPDLNTLYITSARS 277 (307)
T ss_pred EccCCCCCCCceEEeCCCC-EEEecccCCceEEEECCCCcEEEEEE-----CCCCCCccceEeCCCcCEEEEEecCC
Confidence 1 2236799999999998 7744444 459999999865444432 34 5678887743 2 4688888663
No 21
>TIGR03866 PQQ_ABC_repeats PQQ-dependent catabolism-associated beta-propeller protein. Members of this protein family consist of seven repeats each of the YVTN family beta-propeller repeat (see TIGR02276). Members occur invariably as part of a transport operon that is associated with PQQ-dependent catabolism of alcohols such as phenylethanol.
Probab=99.22 E-value=6.9e-08 Score=87.23 Aligned_cols=224 Identities=13% Similarity=0.110 Sum_probs=132.2
Q ss_pred eEEE-EecCCEEEEEEcCCCeeEEeeccCCCcccCeEECCCCC-EEEEeCCC-cEEEEc-CCC--eEEEcCCcCCcccEE
Q 018474 65 ALYT-ATRDGWVKYFILHNETLVNWKHIDSQSLLGLTTTKDGG-VILCDNEK-GLLKVT-EEG--VEAIVPDASFTNDVI 138 (355)
Q Consensus 65 ~l~~-~~~~g~i~~~~~~~g~~~~~~~~~~~p~~gl~~d~~g~-L~v~~~~~-gl~~~~-~~g--~~~~~~~~~~~~~l~ 138 (355)
.+|+ +..++.|..+|..+++..........+. +++++++|+ +|++.... .+..++ .++ ...+... ..+..++
T Consensus 2 ~~~~s~~~d~~v~~~d~~t~~~~~~~~~~~~~~-~l~~~~dg~~l~~~~~~~~~v~~~d~~~~~~~~~~~~~-~~~~~~~ 79 (300)
T TIGR03866 2 KAYVSNEKDNTISVIDTATLEVTRTFPVGQRPR-GITLSKDGKLLYVCASDSDTIQVIDLATGEVIGTLPSG-PDPELFA 79 (300)
T ss_pred cEEEEecCCCEEEEEECCCCceEEEEECCCCCC-ceEECCCCCEEEEEECCCCeEEEEECCCCcEEEeccCC-CCccEEE
Confidence 3554 4558899999998776544434445578 999999987 56665443 466677 355 3333322 3467788
Q ss_pred EccCCc-EEEEeCCCCCCCccccccccccCCCCeEEEEeCCCCeEEEeeccccccccEEEeCCCCEEEEEeCCCCeEEEE
Q 018474 139 AASDGT-LYFTVASTKYTPTDFYKDMAEGKPYGQLRKYDPKLKETTVLHEGFYFANGIALSKNEDFVVVCESWKFRCRRY 217 (355)
Q Consensus 139 ~d~dG~-ly~~d~~~~~~~~~~~~~~~~~~~~g~l~~~dp~~~~~~~~~~~~~~pngi~~~~dg~~l~v~~~~~~~i~~~ 217 (355)
++++|+ +|++... .+.+..||..+++..........+.+++++||++.++++......+..+
T Consensus 80 ~~~~g~~l~~~~~~-----------------~~~l~~~d~~~~~~~~~~~~~~~~~~~~~~~dg~~l~~~~~~~~~~~~~ 142 (300)
T TIGR03866 80 LHPNGKILYIANED-----------------DNLVTVIDIETRKVLAEIPVGVEPEGMAVSPDGKIVVNTSETTNMAHFI 142 (300)
T ss_pred ECCCCCEEEEEcCC-----------------CCeEEEEECCCCeEEeEeeCCCCcceEEECCCCCEEEEEecCCCeEEEE
Confidence 999985 6666432 3578889987665433233234578999999999777776544456666
Q ss_pred EeCCCCCcceeEecccCCCCcCceEECCCCCEE-EEeecCCchhhHhhhcchhHHHHHHhccchhhcccCCCCCCceEEE
Q 018474 218 WLKGDRAGILDAFIENLPGGPDNINLAPDGSFW-IGLIKMNQTGVRAIQKCREKWELLDAYPGLISLLLPMGSDAGARVV 296 (355)
Q Consensus 218 ~~~~~~~~~~~~~~~~~~g~p~~i~~d~~G~lw-v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~ 296 (355)
+.+.... ..... ....|..+.++++|+.+ ++.... +.|.
T Consensus 143 d~~~~~~--~~~~~--~~~~~~~~~~s~dg~~l~~~~~~~------------------------------------~~v~ 182 (300)
T TIGR03866 143 DTKTYEI--VDNVL--VDQRPRFAEFTADGKELWVSSEIG------------------------------------GTVS 182 (300)
T ss_pred eCCCCeE--EEEEE--cCCCccEEEECCCCCEEEEEcCCC------------------------------------CEEE
Confidence 6543211 11111 12346778889999754 543221 3577
Q ss_pred EEeCCCCeEEEEEECCC-CC--cccceeEEEE--eCCEEEEeecCCCeEEEeeCCC
Q 018474 297 KVDGNDGKIIRDFNDPD-AT--YISFVTSAAE--FDGNLYLASLQSNFIGILPLDG 347 (355)
Q Consensus 297 ~~~~~~g~~~~~~~~~~-g~--~~~~~~~~~~--~~g~L~v~~~~~~~i~~~~~~~ 347 (355)
.+|.++++....+.... +. .......+.. ++..+|++....+.+.++++.+
T Consensus 183 i~d~~~~~~~~~~~~~~~~~~~~~~~~~~i~~s~dg~~~~~~~~~~~~i~v~d~~~ 238 (300)
T TIGR03866 183 VIDVATRKVIKKITFEIPGVHPEAVQPVGIKLTKDGKTAFVALGPANRVAVVDAKT 238 (300)
T ss_pred EEEcCcceeeeeeeecccccccccCCccceEECCCCCEEEEEcCCCCeEEEEECCC
Confidence 77775566555543211 10 0001222322 3456677766667787777653
No 22
>PF03022 MRJP: Major royal jelly protein; InterPro: IPR003534 The major royal jelly proteins (MRJPs) comprise 12.5% of the mass, and 82-90% of the protein content [], of honeybee (Apis mellifera) royal jelly. Royal jelly is a substance secreted by the cephalic glands of nurse bees [] and it is used to trigger development of a queen bee from a bee larva. The biological function of the MRJPs is unknown, but they are believed to play a major role in nutrition due to their high essential amino acid content []. Two royal jelly proteins, MRJP3 and MRJP5, contain a tandem repeat that results from a high genetic variablility. This polymorphism may be useful for genotyping individual bees [].; PDB: 3Q6P_B 3Q6K_A 3Q6T_A 2QE8_B.
Probab=99.19 E-value=6.6e-09 Score=93.64 Aligned_cols=183 Identities=17% Similarity=0.158 Sum_probs=116.7
Q ss_pred cccCeEECCCCCEEEEeCCC-------------cEEEEc-CCC--eEEEcCC--c----CCcccEEEcc-C-----CcEE
Q 018474 95 SLLGLTTTKDGGVILCDNEK-------------GLLKVT-EEG--VEAIVPD--A----SFTNDVIAAS-D-----GTLY 146 (355)
Q Consensus 95 p~~gl~~d~~g~L~v~~~~~-------------gl~~~~-~~g--~~~~~~~--~----~~~~~l~~d~-d-----G~ly 146 (355)
++ ++.+|+.|+|||.|.+. .|+.+| .++ ++++.-+ . .+.+++++|. + +.+|
T Consensus 3 V~-~v~iD~~~rLWVlD~G~~~~~~~~~~~~~pKLv~~Dl~t~~li~~~~~p~~~~~~~s~lndl~VD~~~~~~~~~~aY 81 (287)
T PF03022_consen 3 VQ-RVQIDECGRLWVLDSGRPNGLQPPKQVCPPKLVAFDLKTNQLIRRYPFPPDIAPPDSFLNDLVVDVRDGNCDDGFAY 81 (287)
T ss_dssp EE-EEEE-TTSEEEEEE-CCHSSSSTTGHTS--EEEEEETTTTCEEEEEE--CCCS-TCGGEEEEEEECTTTTS-SEEEE
T ss_pred cc-EEEEcCCCCEEEEeCCCcCCCCCCCCCCCcEEEEEECCCCcEEEEEECChHHcccccccceEEEEccCCCCcceEEE
Confidence 35 78899999999998652 388888 455 5554322 1 7889999996 2 4799
Q ss_pred EEeCCCCCCCccccccccccCCCCeEEEEeCCCCeEEEeeccc--------------------cccccEEEeC---CCCE
Q 018474 147 FTVASTKYTPTDFYKDMAEGKPYGQLRKYDPKLKETTVLHEGF--------------------YFANGIALSK---NEDF 203 (355)
Q Consensus 147 ~~d~~~~~~~~~~~~~~~~~~~~g~l~~~dp~~~~~~~~~~~~--------------------~~pngi~~~~---dg~~ 203 (355)
++|.+ .++|..||..+++...+.... ....|+++++ |+++
T Consensus 82 ItD~~-----------------~~glIV~dl~~~~s~Rv~~~~~~~~p~~~~~~i~g~~~~~~dg~~gial~~~~~d~r~ 144 (287)
T PF03022_consen 82 ITDSG-----------------GPGLIVYDLATGKSWRVLHNSFSPDPDAGPFTIGGESFQWPDGIFGIALSPISPDGRW 144 (287)
T ss_dssp EEETT-----------------TCEEEEEETTTTEEEEEETCGCTTS-SSEEEEETTEEEEETTSEEEEEE-TTSTTS-E
T ss_pred EeCCC-----------------cCcEEEEEccCCcEEEEecCCcceeccccceeccCceEecCCCccccccCCCCCCccE
Confidence 99987 447888888777655443221 1135678766 8899
Q ss_pred EEEEeCCCCeEEEEEeC---CCCCc-------ceeEecccCCCCcCceEECCCCCEEEEeecCCchhhHhhhcchhHHHH
Q 018474 204 VVVCESWKFRCRRYWLK---GDRAG-------ILDAFIENLPGGPDNINLAPDGSFWIGLIKMNQTGVRAIQKCREKWEL 273 (355)
Q Consensus 204 l~v~~~~~~~i~~~~~~---~~~~~-------~~~~~~~~~~g~p~~i~~d~~G~lwv~~~~~~~~~~~~~~~~~~~~~~ 273 (355)
||+.-.....++++..+ ..... .++.+. ..++..++++.|++|++|++....
T Consensus 145 LYf~~lss~~ly~v~T~~L~~~~~~~~~~~~~~v~~lG-~k~~~s~g~~~D~~G~ly~~~~~~----------------- 206 (287)
T PF03022_consen 145 LYFHPLSSRKLYRVPTSVLRDPSLSDAQALASQVQDLG-DKGSQSDGMAIDPNGNLYFTDVEQ----------------- 206 (287)
T ss_dssp EEEEETT-SEEEEEEHHHHCSTT--HHH-HHHT-EEEE-E---SECEEEEETTTEEEEEECCC-----------------
T ss_pred EEEEeCCCCcEEEEEHHHhhCccccccccccccceecc-ccCCCCceEEECCCCcEEEecCCC-----------------
Confidence 99998777788888742 22111 122222 233457999999999999998652
Q ss_pred HHhccchhhcccCCCCCCceEEEEEeCCCC-----eEEEEEECCCCCcccceeEEEEeC---CEEEEeec
Q 018474 274 LDAYPGLISLLLPMGSDAGARVVKVDGNDG-----KIIRDFNDPDATYISFVTSAAEFD---GNLYLASL 335 (355)
Q Consensus 274 ~~~~~~~~~~~~~~~~~~~~~v~~~~~~~g-----~~~~~~~~~~g~~~~~~~~~~~~~---g~L~v~~~ 335 (355)
.+|.+.++ ++ +....+++++.+ ..+.++..++ |+||+.+.
T Consensus 207 -------------------~aI~~w~~-~~~~~~~~~~~l~~d~~~l--~~pd~~~i~~~~~g~L~v~sn 254 (287)
T PF03022_consen 207 -------------------NAIGCWDP-DGPYTPENFEILAQDPRTL--QWPDGLKIDPEGDGYLWVLSN 254 (287)
T ss_dssp -------------------TEEEEEET-TTSB-GCCEEEEEE-CC-G--SSEEEEEE-T--TS-EEEEE-
T ss_pred -------------------CeEEEEeC-CCCcCccchheeEEcCcee--eccceeeeccccCceEEEEEC
Confidence 47999999 77 555566676643 3566666655 99999873
No 23
>TIGR02604 Piru_Ver_Nterm putative membrane-bound dehydrogenase domain. All proteins that score above the trusted cutoff score of 45 to this model are large proteins of either Pirellula sp. 1 or Verrucomicrobium spinosum. These proteins all contain, in addition to this domain, several hundred residues of highly variable sequence, and then a well-conserved C-terminal domain (TIGR02603) that features a putative cytochrome c-type heme binding motif CXXCH. The membrane-bound L-sorbosone dehydrogenase from Acetobacter liquefaciens (Gluconacetobacter liquefaciens) is homologous to this domain but lacks additional sequence regions shared by members of this family and belongs to a different clade of the larger family of homologs. It and its closely related homologs are excluded from the this model by scoring between the trusted (45) and noise (18) cutoffs.
Probab=99.19 E-value=4.1e-09 Score=98.84 Aligned_cols=205 Identities=18% Similarity=0.176 Sum_probs=122.6
Q ss_pred eEecCCCCCCCceEEEeeCCCeEEEEecCCEEEEEEcCCC------eeEEeec----c----CCCcccCeEECCCCCEEE
Q 018474 44 TKLGEGCVNHPEDVSVVVSKGALYTATRDGWVKYFILHNE------TLVNWKH----I----DSQSLLGLTTTKDGGVIL 109 (355)
Q Consensus 44 ~~~~~~~~~~p~~i~~d~~~g~l~~~~~~g~i~~~~~~~g------~~~~~~~----~----~~~p~~gl~~d~~g~L~v 109 (355)
+.+.++ +..|++|++. .++ +|++.. ..|+++.-.++ +.+.+.. . ...++ +++++++|+||+
T Consensus 65 ~vfa~~-l~~p~Gi~~~-~~G-lyV~~~-~~i~~~~d~~gdg~ad~~~~~l~~~~~~~~~~~~~~~~-~l~~gpDG~LYv 139 (367)
T TIGR02604 65 NVFAEE-LSMVTGLAVA-VGG-VYVATP-PDILFLRDKDGDDKADGEREVLLSGFGGQINNHHHSLN-SLAWGPDGWLYF 139 (367)
T ss_pred EEeecC-CCCccceeEe-cCC-EEEeCC-CeEEEEeCCCCCCCCCCccEEEEEccCCCCCccccccc-CceECCCCCEEE
Confidence 344444 7889999998 677 998764 45888843222 3333322 1 12377 999999999999
Q ss_pred EeCC--------------------CcEEEEcCCC--eEEEcCCcCCcccEEEccCCcEEEEeCCCCCCCccccccccccC
Q 018474 110 CDNE--------------------KGLLKVTEEG--VEAIVPDASFTNDVIAASDGTLYFTVASTKYTPTDFYKDMAEGK 167 (355)
Q Consensus 110 ~~~~--------------------~gl~~~~~~g--~~~~~~~~~~~~~l~~d~dG~ly~~d~~~~~~~~~~~~~~~~~~ 167 (355)
+... ++++++++++ ++.++.....|++++++++|++|++|..... ......+.++.
T Consensus 140 ~~G~~~~~~~~~~~~~~~~~~~~~g~i~r~~pdg~~~e~~a~G~rnp~Gl~~d~~G~l~~tdn~~~~--~~~i~~~~~g~ 217 (367)
T TIGR02604 140 NHGNTLASKVTRPGTSDESRQGLGGGLFRYNPDGGKLRVVAHGFQNPYGHSVDSWGDVFFCDNDDPP--LCRVTPVAEGG 217 (367)
T ss_pred ecccCCCceeccCCCccCcccccCceEEEEecCCCeEEEEecCcCCCccceECCCCCEEEEccCCCc--eeEEccccccc
Confidence 7651 3589998754 7777777789999999999999999864210 00011111111
Q ss_pred CCCeEE-----EEeCCCC---eE-------------EEe--eccccccccEEEeC-------CCCEEEEEeCCCCeEEEE
Q 018474 168 PYGQLR-----KYDPKLK---ET-------------TVL--HEGFYFANGIALSK-------NEDFVVVCESWKFRCRRY 217 (355)
Q Consensus 168 ~~g~l~-----~~dp~~~---~~-------------~~~--~~~~~~pngi~~~~-------dg~~l~v~~~~~~~i~~~ 217 (355)
..|..+ ..++..+ +. ... ......|.|+++.. -...+++++...++|+++
T Consensus 218 ~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~ap~G~~~y~g~~fp~~~~g~~fv~~~~~~~v~~~ 297 (367)
T TIGR02604 218 RNGYQSFNGRRYDHADRGADHEVPTGEWRQDDRGVETVGDVAGGGTAPCGIAFYRGDALPEEYRGLLLVGDAHGQLIVRY 297 (367)
T ss_pred ccCCCCCCCcccccccccccccccccccccccccccccccccCCCccccEEEEeCCCcCCHHHCCCEEeeeccCCEEEEE
Confidence 001000 0011100 00 000 01113578888873 234588999989999999
Q ss_pred EeCC--CCC-cceeEecccC-C-CCcCceEECCCCCEEEEeec
Q 018474 218 WLKG--DRA-GILDAFIENL-P-GGPDNINLAPDGSFWIGLIK 255 (355)
Q Consensus 218 ~~~~--~~~-~~~~~~~~~~-~-g~p~~i~~d~~G~lwv~~~~ 255 (355)
.++. ... ++.+.|.... . +.|..+.+++||.|||++..
T Consensus 298 ~l~~~g~~~~~~~~~~l~~~~~~~rp~dv~~~pDG~Lyv~d~~ 340 (367)
T TIGR02604 298 SLEPKGAGFKGERPEFLRSNDTWFRPVNVTVGPDGALYVSDWY 340 (367)
T ss_pred EeecCCCccEeecCceEecCCCcccccceeECCCCCEEEEEec
Confidence 9852 211 1212233221 1 46788999999999999964
No 24
>COG3391 Uncharacterized conserved protein [Function unknown]
Probab=99.11 E-value=2e-07 Score=87.82 Aligned_cols=242 Identities=15% Similarity=0.163 Sum_probs=158.7
Q ss_pred CCCceEEEeeCCCeEEEEecCC-EEEEEEcCCCeeEEeeccC-CCcccCeEECCCCC-EEEEeCC-CcEEEEc-CCC--e
Q 018474 52 NHPEDVSVVVSKGALYTATRDG-WVKYFILHNETLVNWKHID-SQSLLGLTTTKDGG-VILCDNE-KGLLKVT-EEG--V 124 (355)
Q Consensus 52 ~~p~~i~~d~~~g~l~~~~~~g-~i~~~~~~~g~~~~~~~~~-~~p~~gl~~d~~g~-L~v~~~~-~gl~~~~-~~g--~ 124 (355)
..|..++..+.+..+|+..... .+..++........+...+ ..|. +++..+.|. +|+.+.. +.+..++ ... .
T Consensus 31 ~~~~~v~~~~~g~~~~v~~~~~~~~~~~~~~~n~~~~~~~~g~~~p~-~i~v~~~~~~vyv~~~~~~~v~vid~~~~~~~ 109 (381)
T COG3391 31 RGPGGVAVNPDGTQVYVANSGSNDVSVIDATSNTVTQSLSVGGVYPA-GVAVNPAGNKVYVTTGDSNTVSVIDTATNTVL 109 (381)
T ss_pred CCCceeEEcCccCEEEEEeecCceeeecccccceeeeeccCCCcccc-ceeeCCCCCeEEEecCCCCeEEEEcCccccee
Confidence 4899999997777899876533 4555655433334333333 5688 999987776 9998865 4566666 322 3
Q ss_pred EEEcCCcCCcccEEEccCC-cEEEEeCCCCCCCccccccccccCCCCeEEEEeCCCCeEEEeeccccccccEEEeCCCCE
Q 018474 125 EAIVPDASFTNDVIAASDG-TLYFTVASTKYTPTDFYKDMAEGKPYGQLRKYDPKLKETTVLHEGFYFANGIALSKNEDF 203 (355)
Q Consensus 125 ~~~~~~~~~~~~l~~d~dG-~ly~~d~~~~~~~~~~~~~~~~~~~~g~l~~~dp~~~~~~~~~~~~~~pngi~~~~dg~~ 203 (355)
+..... ..|.+++++++| .+|+++... ..+.+..+|+.+++..........|-+++++|+|+.
T Consensus 110 ~~~~vG-~~P~~~~~~~~~~~vYV~n~~~---------------~~~~vsvid~~t~~~~~~~~vG~~P~~~a~~p~g~~ 173 (381)
T COG3391 110 GSIPVG-LGPVGLAVDPDGKYVYVANAGN---------------GNNTVSVIDAATNKVTATIPVGNTPTGVAVDPDGNK 173 (381)
T ss_pred eEeeec-cCCceEEECCCCCEEEEEeccc---------------CCceEEEEeCCCCeEEEEEecCCCcceEEECCCCCe
Confidence 333222 489999999988 899998751 146789999988876554444446899999999999
Q ss_pred EEEEeCCCCeEEEEEeCCCCCcc-e-eEecccCCCCcCceEECCCCC-EEEEeecCCchhhHhhhcchhHHHHHHhccch
Q 018474 204 VVVCESWKFRCRRYWLKGDRAGI-L-DAFIENLPGGPDNINLAPDGS-FWIGLIKMNQTGVRAIQKCREKWELLDAYPGL 280 (355)
Q Consensus 204 l~v~~~~~~~i~~~~~~~~~~~~-~-~~~~~~~~g~p~~i~~d~~G~-lwv~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 280 (355)
+|+++...++|..++.++..... . .... .....|.++.++++|+ +|+.....
T Consensus 174 vyv~~~~~~~v~vi~~~~~~v~~~~~~~~~-~~~~~P~~i~v~~~g~~~yV~~~~~------------------------ 228 (381)
T COG3391 174 VYVTNSDDNTVSVIDTSGNSVVRGSVGSLV-GVGTGPAGIAVDPDGNRVYVANDGS------------------------ 228 (381)
T ss_pred EEEEecCCCeEEEEeCCCcceecccccccc-ccCCCCceEEECCCCCEEEEEeccC------------------------
Confidence 99999889999999976543321 1 0011 2234588999999997 78877551
Q ss_pred hhcccCCCCCCceEEEEEeCCCCeEEEE-EECCCCCcccceeEEEEeCCEEEEeecCCCeEEEeeCCC
Q 018474 281 ISLLLPMGSDAGARVVKVDGNDGKIIRD-FNDPDATYISFVTSAAEFDGNLYLASLQSNFIGILPLDG 347 (355)
Q Consensus 281 ~~~~~~~~~~~~~~v~~~~~~~g~~~~~-~~~~~g~~~~~~~~~~~~~g~L~v~~~~~~~i~~~~~~~ 347 (355)
....+.++|...+..+.. +.. +........+..++...|+.....+.+.+++.+.
T Consensus 229 ----------~~~~v~~id~~~~~v~~~~~~~--~~~~~~~v~~~p~g~~~yv~~~~~~~V~vid~~~ 284 (381)
T COG3391 229 ----------GSNNVLKIDTATGNVTATDLPV--GSGAPRGVAVDPAGKAAYVANSQGGTVSVIDGAT 284 (381)
T ss_pred ----------CCceEEEEeCCCceEEEecccc--ccCCCCceeECCCCCEEEEEecCCCeEEEEeCCC
Confidence 124688888745554443 222 2111122223345577777776677777776554
No 25
>TIGR02658 TTQ_MADH_Hv methylamine dehydrogenase heavy chain. This family consists of the heavy chain of methylamine dehydrogenase light chain, a periplasmic enzyme. The enzyme contains a tryptophan tryptophylquinone (TTQ) prothetic group derived from two Trp residues in the light subunity. The enzyme forms a complex with the type I blue copper protein amicyanin and a cytochrome. Electron transfer procedes from TQQ to the copper and then to the heme group of the cytochrome.
Probab=98.99 E-value=2.3e-06 Score=78.71 Aligned_cols=246 Identities=15% Similarity=0.101 Sum_probs=140.9
Q ss_pred CCeEEEEecC-----CEEEEEEcCCCeeEEeeccCCCcccCeEECCCCC-EEEEeC---------CCc-EEEEc-CCC--
Q 018474 63 KGALYTATRD-----GWVKYFILHNETLVNWKHIDSQSLLGLTTTKDGG-VILCDN---------EKG-LLKVT-EEG-- 123 (355)
Q Consensus 63 ~g~l~~~~~~-----g~i~~~~~~~g~~~~~~~~~~~p~~gl~~d~~g~-L~v~~~---------~~g-l~~~~-~~g-- 123 (355)
..++|+.... ++|+.+|..+++...-...+.+|+ ++ +.++|+ ||+|.. ... +-.+| .++
T Consensus 12 ~~~v~V~d~~~~~~~~~v~ViD~~~~~v~g~i~~G~~P~-~~-~spDg~~lyva~~~~~R~~~G~~~d~V~v~D~~t~~~ 89 (352)
T TIGR02658 12 ARRVYVLDPGHFAATTQVYTIDGEAGRVLGMTDGGFLPN-PV-VASDGSFFAHASTVYSRIARGKRTDYVEVIDPQTHLP 89 (352)
T ss_pred CCEEEEECCcccccCceEEEEECCCCEEEEEEEccCCCc-ee-ECCCCCEEEEEeccccccccCCCCCEEEEEECccCcE
Confidence 3456665443 889999998888776666778899 86 888875 899987 333 55666 355
Q ss_pred eEEEcCC-------cCCcccEEEccCC-cEEEEeCCCCCC-----Cc--cccc--------cccc-c-------CCCCeE
Q 018474 124 VEAIVPD-------ASFTNDVIAASDG-TLYFTVASTKYT-----PT--DFYK--------DMAE-G-------KPYGQL 172 (355)
Q Consensus 124 ~~~~~~~-------~~~~~~l~~d~dG-~ly~~d~~~~~~-----~~--~~~~--------~~~~-~-------~~~g~l 172 (355)
+..+... ...++.+++++|| .+|+.+....-. .. .... .++. + ...|..
T Consensus 90 ~~~i~~p~~p~~~~~~~~~~~~ls~dgk~l~V~n~~p~~~V~VvD~~~~kvv~ei~vp~~~~vy~t~e~~~~~~~~Dg~~ 169 (352)
T TIGR02658 90 IADIELPEGPRFLVGTYPWMTSLTPDNKTLLFYQFSPSPAVGVVDLEGKAFVRMMDVPDCYHIFPTANDTFFMHCRDGSL 169 (352)
T ss_pred EeEEccCCCchhhccCccceEEECCCCCEEEEecCCCCCEEEEEECCCCcEEEEEeCCCCcEEEEecCCccEEEeecCce
Confidence 4444321 1566789999999 699877431100 00 0000 0110 0 011222
Q ss_pred EE--EeCCCCeEEE----eecc-----ccccccEEEeC-CCCEEEEEeCCCCeEEEEEeCCCCCcce---eEecccC---
Q 018474 173 RK--YDPKLKETTV----LHEG-----FYFANGIALSK-NEDFVVVCESWKFRCRRYWLKGDRAGIL---DAFIENL--- 234 (355)
Q Consensus 173 ~~--~dp~~~~~~~----~~~~-----~~~pngi~~~~-dg~~l~v~~~~~~~i~~~~~~~~~~~~~---~~~~~~~--- 234 (355)
.. ++. +|+... +... ...| .+++ ||+.+|++.. +.|+.+++++...... ..+....
T Consensus 170 ~~v~~d~-~g~~~~~~~~vf~~~~~~v~~rP---~~~~~dg~~~~vs~e--G~V~~id~~~~~~~~~~~~~~~~~~~~~~ 243 (352)
T TIGR02658 170 AKVGYGT-KGNPKIKPTEVFHPEDEYLINHP---AYSNKSGRLVWPTYT--GKIFQIDLSSGDAKFLPAIEAFTEAEKAD 243 (352)
T ss_pred EEEEecC-CCceEEeeeeeecCCccccccCC---ceEcCCCcEEEEecC--CeEEEEecCCCcceecceeeecccccccc
Confidence 11 121 111111 1011 1223 3455 8888888765 8999999765432221 2111111
Q ss_pred CCCcCc---eEECCCC-CEEEEeecCCchhhHhhhcchhHHHHHHhccchhhcccCCCCCCceEEEEEeCCCCeEEEEEE
Q 018474 235 PGGPDN---INLAPDG-SFWIGLIKMNQTGVRAIQKCREKWELLDAYPGLISLLLPMGSDAGARVVKVDGNDGKIIRDFN 310 (355)
Q Consensus 235 ~g~p~~---i~~d~~G-~lwv~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~g~~~~~~~ 310 (355)
...|.+ ++++++| ++||++.++... .+ -.+...|..+|.++++.+..+.
T Consensus 244 ~wrP~g~q~ia~~~dg~~lyV~~~~~~~~----th-----------------------k~~~~~V~ViD~~t~kvi~~i~ 296 (352)
T TIGR02658 244 GWRPGGWQQVAYHRARDRIYLLADQRAKW----TH-----------------------KTASRFLFVVDAKTGKRLRKIE 296 (352)
T ss_pred ccCCCcceeEEEcCCCCEEEEEecCCccc----cc-----------------------cCCCCEEEEEECCCCeEEEEEe
Confidence 124555 8888776 699987653200 00 0223479999997888888876
Q ss_pred CCCCCcccceeEEE--EeCC-EEEEeecCCCeEEEeeCCCC
Q 018474 311 DPDATYISFVTSAA--EFDG-NLYLASLQSNFIGILPLDGP 348 (355)
Q Consensus 311 ~~~g~~~~~~~~~~--~~~g-~L~v~~~~~~~i~~~~~~~~ 348 (355)
... .+..+. .++. .||+.+-.++.|.+++..+.
T Consensus 297 vG~-----~~~~iavS~Dgkp~lyvtn~~s~~VsViD~~t~ 332 (352)
T TIGR02658 297 LGH-----EIDSINVSQDAKPLLYALSTGDKTLYIFDAETG 332 (352)
T ss_pred CCC-----ceeeEEECCCCCeEEEEeCCCCCcEEEEECcCC
Confidence 522 233333 3456 78888888999999997655
No 26
>COG3292 Predicted periplasmic ligand-binding sensor domain [Signal transduction mechanisms]
Probab=98.97 E-value=1.3e-08 Score=95.59 Aligned_cols=195 Identities=17% Similarity=0.157 Sum_probs=111.4
Q ss_pred CCceEEEeeCCCeEEEEecCCEEEEEEcCCCeeEEeec--cCCCcccCeEECCCCCEEEEeCCCcEEEEc-CC-CeEE-E
Q 018474 53 HPEDVSVVVSKGALYTATRDGWVKYFILHNETLVNWKH--IDSQSLLGLTTTKDGGVILCDNEKGLLKVT-EE-GVEA-I 127 (355)
Q Consensus 53 ~p~~i~~d~~~g~l~~~~~~g~i~~~~~~~g~~~~~~~--~~~~p~~gl~~d~~g~L~v~~~~~gl~~~~-~~-g~~~-~ 127 (355)
.-..++.| ..+.||+++..| +++.++..-++..+.. ..+.+. .+..|.+|.+|+++. +|+.++. +. ++.. .
T Consensus 207 ~I~al~~d-~qg~LWVGTdqG-v~~~e~~G~~~sn~~~~lp~~~I~-ll~qD~qG~lWiGTe-nGl~r~~l~rq~Lq~~~ 282 (671)
T COG3292 207 AINALIAD-VQGRLWVGTDQG-VYLQEAEGWRASNWGPMLPSGNIL-LLVQDAQGELWIGTE-NGLWRTRLPRQGLQIPL 282 (671)
T ss_pred hHHHHHHH-hcCcEEEEeccc-eEEEchhhccccccCCCCcchhee-eeecccCCCEEEeec-ccceeEecCCCCccccc
Confidence 34456666 678899999777 8888775533332211 123455 677899999999984 5788776 43 3222 1
Q ss_pred c---CCcCCcccEEEccCCcEEEEeCCCCC--CCcccc------------------------ccccccCCCCeEEEEeCC
Q 018474 128 V---PDASFTNDVIAASDGTLYFTVASTKY--TPTDFY------------------------KDMAEGKPYGQLRKYDPK 178 (355)
Q Consensus 128 ~---~~~~~~~~l~~d~dG~ly~~d~~~~~--~~~~~~------------------------~~~~~~~~~g~l~~~dp~ 178 (355)
. .....++++..|.+|.+|+++..... ...++. ..++..+..|-+..-++.
T Consensus 283 ~~~~l~~S~vnsL~~D~dGsLWv~t~~giv~~~~a~w~~ma~in~~dG~v~~~~~~a~~ll~~~v~~~ns~g~L~van~s 362 (671)
T COG3292 283 SKMHLGVSTVNSLWLDTDGSLWVGTYGGIVRYLTADWKRMAVINDSDGGVSQYEAVAPALLSWGVRQLNSIGELMVANGS 362 (671)
T ss_pred cccCCccccccceeeccCCCEeeeccCceEEEecchhhheeeeecCCCchhhhhccCchhcccceeeccccceEEEecCC
Confidence 1 12277899999999999998865321 111110 011222223335556666
Q ss_pred CCeEEEeecccc--ccccEEEeCCCCEEEEEeCCCCeEEEEEeCCCCCcceeEecccCCC-CcCceEECCCCCEEEEeec
Q 018474 179 LKETTVLHEGFY--FANGIALSKNEDFVVVCESWKFRCRRYWLKGDRAGILDAFIENLPG-GPDNINLAPDGSFWIGLIK 255 (355)
Q Consensus 179 ~~~~~~~~~~~~--~pngi~~~~dg~~l~v~~~~~~~i~~~~~~~~~~~~~~~~~~~~~g-~p~~i~~d~~G~lwv~~~~ 255 (355)
+|..-....... .-.-.+++.+|+ +|+.. ..+++.+++.+. .+..-.-..+++. -..-+..|.++++|+++..
T Consensus 363 tG~~v~sv~q~Rg~nit~~~~d~~g~-lWlgs-~q~GLsrl~n~n--~~avlde~agl~ss~V~aived~dnsLWIGTs~ 438 (671)
T COG3292 363 TGELVRSVHQLRGMNITTTLEDSRGR-LWLGS-MQNGLSRLDNKN--EWAVLDEDAGLPSSEVSAIVEDPDNSLWIGTSG 438 (671)
T ss_pred CCcEEEEeeeccccccchhhhccCCc-EEEEe-cccchhhhccCC--cccccccccCCcccceeeeeecCCCCEEEeccC
Confidence 665433222222 223345666665 77765 456899988643 1111111112221 1233678999999999975
No 27
>KOG4659 consensus Uncharacterized conserved protein (Rhs family) [Function unknown]
Probab=98.96 E-value=6.3e-07 Score=90.95 Aligned_cols=177 Identities=15% Similarity=0.188 Sum_probs=115.9
Q ss_pred CCCceEEEeeCCCeEEEEec-CCEEEEEEcCCC-----eeEEeec----------cC-----------CCcccCeEECCC
Q 018474 52 NHPEDVSVVVSKGALYTATR-DGWVKYFILHNE-----TLVNWKH----------ID-----------SQSLLGLTTTKD 104 (355)
Q Consensus 52 ~~p~~i~~d~~~g~l~~~~~-~g~i~~~~~~~g-----~~~~~~~----------~~-----------~~p~~gl~~d~~ 104 (355)
..--.||++|-+|.||++.. ..+|+|+..-.+ .++.++- .+ ..|. ||++|++
T Consensus 407 sh~Yy~AvsPvdgtlyvSdp~s~qv~rv~sl~~~d~~~N~evvaG~Ge~Clp~desCGDGalA~dA~L~~Pk-GIa~dk~ 485 (1899)
T KOG4659|consen 407 SHSYYIAVSPVDGTLYVSDPLSKQVWRVSSLEPQDSRNNYEVVAGDGEVCLPADESCGDGALAQDAQLIFPK-GIAFDKM 485 (1899)
T ss_pred cceeEEEecCcCceEEecCCCcceEEEeccCCccccccCeeEEeccCcCccccccccCcchhcccceeccCC-ceeEccC
Confidence 44557899999999999876 578888854222 1222211 11 2488 9999999
Q ss_pred CCEEEEeCCCcEEEEcCCC-eEEEcCC------c--------------CCcccEEEcc-CCcEEEEeCCCCCCCcccccc
Q 018474 105 GGVILCDNEKGLLKVTEEG-VEAIVPD------A--------------SFTNDVIAAS-DGTLYFTVASTKYTPTDFYKD 162 (355)
Q Consensus 105 g~L~v~~~~~gl~~~~~~g-~~~~~~~------~--------------~~~~~l~~d~-dG~ly~~d~~~~~~~~~~~~~ 162 (355)
|.||++|. ..|-.+|.+| +..+... + .+|.+++++| |+.||+-|..
T Consensus 486 g~lYfaD~-t~IR~iD~~giIstlig~~~~~~~p~~C~~~~kl~~~~leWPT~LaV~Pmdnsl~Vld~n----------- 553 (1899)
T KOG4659|consen 486 GNLYFADG-TRIRVIDTTGIISTLIGTTPDQHPPRTCAQITKLVDLQLEWPTSLAVDPMDNSLLVLDTN----------- 553 (1899)
T ss_pred CcEEEecc-cEEEEeccCceEEEeccCCCCccCccccccccchhheeeecccceeecCCCCeEEEeecc-----------
Confidence 99999984 4677777788 6554321 0 8999999999 7799998755
Q ss_pred ccccCCCCeEEEEeCCCCeEEEee---------------------ccccccccEEEeCCCCEEEEEeCCCCeEEEEEe--
Q 018474 163 MAEGKPYGQLRKYDPKLKETTVLH---------------------EGFYFANGIALSKNEDFVVVCESWKFRCRRYWL-- 219 (355)
Q Consensus 163 ~~~~~~~g~l~~~dp~~~~~~~~~---------------------~~~~~pngi~~~~dg~~l~v~~~~~~~i~~~~~-- 219 (355)
-++++++. ++++.+. ..+..+..|+++++|. ||++|+...+|-|+..
T Consensus 554 --------vvlrit~~-~rV~Ii~GrP~hC~~a~~t~~~skla~H~tl~~~r~Iavg~~G~-lyvaEsD~rriNrvr~~~ 623 (1899)
T KOG4659|consen 554 --------VVLRITVV-HRVRIILGRPTHCDLANATSSASKLADHRTLLIQRDIAVGTDGA-LYVAESDGRRINRVRKLS 623 (1899)
T ss_pred --------eEEEEccC-ccEEEEcCCccccccCCCchhhhhhhhhhhhhhhhceeecCCce-EEEEeccchhhhheEEec
Confidence 23333332 2222111 1234567899999997 9999998777766553
Q ss_pred -CCCCCcceeEecc-------------------------cCCCCcCceEECCCCCEEEEeec
Q 018474 220 -KGDRAGILDAFIE-------------------------NLPGGPDNINLAPDGSFWIGLIK 255 (355)
Q Consensus 220 -~~~~~~~~~~~~~-------------------------~~~g~p~~i~~d~~G~lwv~~~~ 255 (355)
+| +.-.++. ..-..|..+++.+||.++|++.+
T Consensus 624 tdg----~i~ilaGa~S~C~C~~~~~cdcfs~~~~~At~A~lnsp~alaVsPdg~v~IAD~g 681 (1899)
T KOG4659|consen 624 TDG----TISILAGAKSPCSCDVAACCDCFSLRDVAATQAKLNSPYALAVSPDGDVIIADSG 681 (1899)
T ss_pred cCc----eEEEecCCCCCCCcccccCCccccccchhhhccccCCcceEEECCCCcEEEecCC
Confidence 22 1111110 00013667889999999999976
No 28
>COG3391 Uncharacterized conserved protein [Function unknown]
Probab=98.91 E-value=3.3e-07 Score=86.39 Aligned_cols=182 Identities=16% Similarity=0.127 Sum_probs=129.5
Q ss_pred CCCceEEEeeCCCeEEEEec-CCEEEEEEcCCCeeEEeeccCCCcccCeEECCCC-CEEEEeCC---CcEEEEcC-CC--
Q 018474 52 NHPEDVSVVVSKGALYTATR-DGWVKYFILHNETLVNWKHIDSQSLLGLTTTKDG-GVILCDNE---KGLLKVTE-EG-- 123 (355)
Q Consensus 52 ~~p~~i~~d~~~g~l~~~~~-~g~i~~~~~~~g~~~~~~~~~~~p~~gl~~d~~g-~L~v~~~~---~gl~~~~~-~g-- 123 (355)
..|.+++..+.+..+|+.+. ++.|..+|..+.+.......+..|. +++++++| .+||++.. .-+..++. ++
T Consensus 74 ~~p~~i~v~~~~~~vyv~~~~~~~v~vid~~~~~~~~~~~vG~~P~-~~~~~~~~~~vYV~n~~~~~~~vsvid~~t~~~ 152 (381)
T COG3391 74 VYPAGVAVNPAGNKVYVTTGDSNTVSVIDTATNTVLGSIPVGLGPV-GLAVDPDGKYVYVANAGNGNNTVSVIDAATNKV 152 (381)
T ss_pred ccccceeeCCCCCeEEEecCCCCeEEEEcCcccceeeEeeeccCCc-eEEECCCCCEEEEEecccCCceEEEEeCCCCeE
Confidence 78999999977777999876 4789999966666655555556899 99999887 79999984 33666674 44
Q ss_pred eEEEcCCcCCcccEEEccCCc-EEEEeCCCCCCCccccccccccCCCCeEEEEeCCCCeEEE-----eeccccccccEEE
Q 018474 124 VEAIVPDASFTNDVIAASDGT-LYFTVASTKYTPTDFYKDMAEGKPYGQLRKYDPKLKETTV-----LHEGFYFANGIAL 197 (355)
Q Consensus 124 ~~~~~~~~~~~~~l~~d~dG~-ly~~d~~~~~~~~~~~~~~~~~~~~g~l~~~dp~~~~~~~-----~~~~~~~pngi~~ 197 (355)
.+..... ..|.+++++++|+ +|+++.. .+.+..+|+++..... .......|.++++
T Consensus 153 ~~~~~vG-~~P~~~a~~p~g~~vyv~~~~-----------------~~~v~vi~~~~~~v~~~~~~~~~~~~~~P~~i~v 214 (381)
T COG3391 153 TATIPVG-NTPTGVAVDPDGNKVYVTNSD-----------------DNTVSVIDTSGNSVVRGSVGSLVGVGTGPAGIAV 214 (381)
T ss_pred EEEEecC-CCcceEEECCCCCeEEEEecC-----------------CCeEEEEeCCCcceeccccccccccCCCCceEEE
Confidence 2322221 4679999999995 9999854 5678888877665553 1233567999999
Q ss_pred eCCCCEEEEEeCCC--CeEEEEEeCCCCCcceeEecccCCCCcCceEECCCCCEEEEee
Q 018474 198 SKNEDFVVVCESWK--FRCRRYWLKGDRAGILDAFIENLPGGPDNINLAPDGSFWIGLI 254 (355)
Q Consensus 198 ~~dg~~l~v~~~~~--~~i~~~~~~~~~~~~~~~~~~~~~g~p~~i~~d~~G~lwv~~~ 254 (355)
++||+.+|+++..+ +.+.+++...........-. ... .|.++..+++|..+....
T Consensus 215 ~~~g~~~yV~~~~~~~~~v~~id~~~~~v~~~~~~~-~~~-~~~~v~~~p~g~~~yv~~ 271 (381)
T COG3391 215 DPDGNRVYVANDGSGSNNVLKIDTATGNVTATDLPV-GSG-APRGVAVDPAGKAAYVAN 271 (381)
T ss_pred CCCCCEEEEEeccCCCceEEEEeCCCceEEEecccc-ccC-CCCceeECCCCCEEEEEe
Confidence 99999999999876 58888887543222211111 222 588899999997555543
No 29
>PF07995 GSDH: Glucose / Sorbosone dehydrogenase; InterPro: IPR012938 Proteins containing this domain are thought to be glucose/sorbosone dehydrogenases. The best characterised of these proteins is soluble glucose dehydrogenase (P13650 from SWISSPROT) from Acinetobacter calcoaceticus, which oxidises glucose to gluconolactone. The enzyme is a calcium-dependent homodimer which uses PQQ as a cofactor [].; GO: 0016901 oxidoreductase activity, acting on the CH-OH group of donors, quinone or similar compound as acceptor, 0048038 quinone binding, 0005975 carbohydrate metabolic process; PDB: 2ISM_A 2WG3_D 3HO5_A 3HO4_A 3HO3_A 2WFT_A 2WG4_B 2WFX_B 1CRU_A 1CQ1_B ....
Probab=98.89 E-value=4.3e-07 Score=83.88 Aligned_cols=154 Identities=19% Similarity=0.283 Sum_probs=95.4
Q ss_pred CCCceEEEeeCCCeEEEEecCCEEEEEEcCCCee-EEeecc-------CCCcccCeEECCC----CCEEEEeCCC-----
Q 018474 52 NHPEDVSVVVSKGALYTATRDGWVKYFILHNETL-VNWKHI-------DSQSLLGLTTTKD----GGVILCDNEK----- 114 (355)
Q Consensus 52 ~~p~~i~~d~~~g~l~~~~~~g~i~~~~~~~g~~-~~~~~~-------~~~p~~gl~~d~~----g~L~v~~~~~----- 114 (355)
..|.+|++. .+|.+|++...|+|++++. ++.. ..+... ..... |++++++ +.||++....
T Consensus 2 ~~P~~~a~~-pdG~l~v~e~~G~i~~~~~-~g~~~~~v~~~~~v~~~~~~gll-gia~~p~f~~n~~lYv~~t~~~~~~~ 78 (331)
T PF07995_consen 2 NNPRSMAFL-PDGRLLVAERSGRIWVVDK-DGSLKTPVADLPEVFADGERGLL-GIAFHPDFASNGYLYVYYTNADEDGG 78 (331)
T ss_dssp SSEEEEEEE-TTSCEEEEETTTEEEEEET-TTEECEEEEE-TTTBTSTTBSEE-EEEE-TTCCCC-EEEEEEEEE-TSSS
T ss_pred CCceEEEEe-CCCcEEEEeCCceEEEEeC-CCcCcceecccccccccccCCcc-cceeccccCCCCEEEEEEEcccCCCC
Confidence 579999999 5688999999999999994 5554 322221 12356 8899974 8899976521
Q ss_pred ----cEEEEc--CC-C----eEEE----cC---CcCCcccEEEccCCcEEEEeCCCCCCCccccccccccCCCCeEEEEe
Q 018474 115 ----GLLKVT--EE-G----VEAI----VP---DASFTNDVIAASDGTLYFTVASTKYTPTDFYKDMAEGKPYGQLRKYD 176 (355)
Q Consensus 115 ----gl~~~~--~~-g----~~~~----~~---~~~~~~~l~~d~dG~ly~~d~~~~~~~~~~~~~~~~~~~~g~l~~~d 176 (355)
.|.++. .. . .+.+ .. .......|++++||.||++.....- ....... ....|.++|++
T Consensus 79 ~~~~~v~r~~~~~~~~~~~~~~~l~~~~p~~~~~~H~g~~l~fgpDG~LYvs~G~~~~--~~~~~~~--~~~~G~ilri~ 154 (331)
T PF07995_consen 79 DNDNRVVRFTLSDGDGDLSSEEVLVTGLPDTSSGNHNGGGLAFGPDGKLYVSVGDGGN--DDNAQDP--NSLRGKILRID 154 (331)
T ss_dssp SEEEEEEEEEEETTSCEEEEEEEEEEEEES-CSSSS-EEEEEE-TTSEEEEEEB-TTT--GGGGCST--TSSTTEEEEEE
T ss_pred CcceeeEEEeccCCccccccceEEEEEeCCCCCCCCCCccccCCCCCcEEEEeCCCCC--ccccccc--ccccceEEEec
Confidence 466665 22 1 2222 11 1145566999999999998754211 1111111 23367899999
Q ss_pred CCCC-------------eEEEeeccccccccEEEeCCCCEEEEEeCCCC
Q 018474 177 PKLK-------------ETTVLHEGFYFANGIALSKNEDFVVVCESWKF 212 (355)
Q Consensus 177 p~~~-------------~~~~~~~~~~~pngi~~~~dg~~l~v~~~~~~ 212 (355)
+++. ..+.++.++.+|.+++++|....||+++.+..
T Consensus 155 ~dG~~p~dnP~~~~~~~~~~i~A~GlRN~~~~~~d~~tg~l~~~d~G~~ 203 (331)
T PF07995_consen 155 PDGSIPADNPFVGDDGADSEIYAYGLRNPFGLAFDPNTGRLWAADNGPD 203 (331)
T ss_dssp TTSSB-TTSTTTTSTTSTTTEEEE--SEEEEEEEETTTTEEEEEEE-SS
T ss_pred ccCcCCCCCccccCCCceEEEEEeCCCccccEEEECCCCcEEEEccCCC
Confidence 8643 34566788999999999999334999997643
No 30
>cd00200 WD40 WD40 domain, found in a number of eukaryotic proteins that cover a wide variety of functions including adaptor/regulatory modules in signal transduction, pre-mRNA processing and cytoskeleton assembly; typically contains a GH dipeptide 11-24 residues from its N-terminus and the WD dipeptide at its C-terminus and is 40 residues long, hence the name WD40; between GH and WD lies a conserved core; serves as a stable propeller-like platform to which proteins can bind either stably or reversibly; forms a propeller-like structure with several blades where each blade is composed of a four-stranded anti-parallel b-sheet; instances with few detectable copies are hypothesized to form larger structures by dimerization; each WD40 sequence repeat forms the first three strands of one blade and the last strand in the next blade; the last C-terminal WD40 repeat completes the blade structure of the first WD40 repeat to create the closed ring propeller-structure; residues on the top and botto
Probab=98.86 E-value=7.8e-06 Score=72.04 Aligned_cols=178 Identities=16% Similarity=0.217 Sum_probs=113.8
Q ss_pred ceEEEeeCCCeEEEEecCCEEEEEEcCCCe-eEEeeccCCCcccCeEECCCCCEEEEeC-CCcEEEEcC-CC--eEEEcC
Q 018474 55 EDVSVVVSKGALYTATRDGWVKYFILHNET-LVNWKHIDSQSLLGLTTTKDGGVILCDN-EKGLLKVTE-EG--VEAIVP 129 (355)
Q Consensus 55 ~~i~~d~~~g~l~~~~~~g~i~~~~~~~g~-~~~~~~~~~~p~~gl~~d~~g~L~v~~~-~~gl~~~~~-~g--~~~~~~ 129 (355)
..+.+.+.+..++++..+|.|..++..+++ ...+......+. ++.+.++++++++.. .+.+..++. ++ ...+..
T Consensus 55 ~~~~~~~~~~~l~~~~~~~~i~i~~~~~~~~~~~~~~~~~~i~-~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~ 133 (289)
T cd00200 55 RDVAASADGTYLASGSSDKTIRLWDLETGECVRTLTGHTSYVS-SVAFSPDGRILSSSSRDKTIKVWDVETGKCLTTLRG 133 (289)
T ss_pred eEEEECCCCCEEEEEcCCCeEEEEEcCcccceEEEeccCCcEE-EEEEcCCCCEEEEecCCCeEEEEECCCcEEEEEecc
Confidence 377888555688888889999999987653 333332233566 888988888887776 445666663 34 444443
Q ss_pred CcCCcccEEEccCCcEEEEeCCCCCCCccccccccccCCCCeEEEEeCCCCeEEE-eeccccccccEEEeCCCCEEEEEe
Q 018474 130 DASFTNDVIAASDGTLYFTVASTKYTPTDFYKDMAEGKPYGQLRKYDPKLKETTV-LHEGFYFANGIALSKNEDFVVVCE 208 (355)
Q Consensus 130 ~~~~~~~l~~d~dG~ly~~d~~~~~~~~~~~~~~~~~~~~g~l~~~dp~~~~~~~-~~~~~~~pngi~~~~dg~~l~v~~ 208 (355)
....+.++.+++++.+.++... .+.+..||..+++... +.........++++++++.++++.
T Consensus 134 ~~~~i~~~~~~~~~~~l~~~~~-----------------~~~i~i~d~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~ 196 (289)
T cd00200 134 HTDWVNSVAFSPDGTFVASSSQ-----------------DGTIKLWDLRTGKCVATLTGHTGEVNSVAFSPDGEKLLSSS 196 (289)
T ss_pred CCCcEEEEEEcCcCCEEEEEcC-----------------CCcEEEEEccccccceeEecCccccceEEECCCcCEEEEec
Confidence 3356888999998877665432 4568888876554332 222223467889999998777766
Q ss_pred CCCCeEEEEEeCCCCCcceeEecccCCCCcCceEECCCCCEEEEee
Q 018474 209 SWKFRCRRYWLKGDRAGILDAFIENLPGGPDNINLAPDGSFWIGLI 254 (355)
Q Consensus 209 ~~~~~i~~~~~~~~~~~~~~~~~~~~~g~p~~i~~d~~G~lwv~~~ 254 (355)
. .+.|..|++.... ....+. ........+.+++++.++++..
T Consensus 197 ~-~~~i~i~d~~~~~--~~~~~~-~~~~~i~~~~~~~~~~~~~~~~ 238 (289)
T cd00200 197 S-DGTIKLWDLSTGK--CLGTLR-GHENGVNSVAFSPDGYLLASGS 238 (289)
T ss_pred C-CCcEEEEECCCCc--eecchh-hcCCceEEEEEcCCCcEEEEEc
Confidence 5 6789999875321 111111 1222345677888887777765
No 31
>cd00200 WD40 WD40 domain, found in a number of eukaryotic proteins that cover a wide variety of functions including adaptor/regulatory modules in signal transduction, pre-mRNA processing and cytoskeleton assembly; typically contains a GH dipeptide 11-24 residues from its N-terminus and the WD dipeptide at its C-terminus and is 40 residues long, hence the name WD40; between GH and WD lies a conserved core; serves as a stable propeller-like platform to which proteins can bind either stably or reversibly; forms a propeller-like structure with several blades where each blade is composed of a four-stranded anti-parallel b-sheet; instances with few detectable copies are hypothesized to form larger structures by dimerization; each WD40 sequence repeat forms the first three strands of one blade and the last strand in the next blade; the last C-terminal WD40 repeat completes the blade structure of the first WD40 repeat to create the closed ring propeller-structure; residues on the top and botto
Probab=98.79 E-value=1.7e-05 Score=69.90 Aligned_cols=180 Identities=17% Similarity=0.229 Sum_probs=109.8
Q ss_pred CCCceEEEeeCCCeEEEEecCCEEEEEEcCCCeeEEeec-cCCCcccCeEECCCCC-EEEEeCCCcEEEEc-CCC--eEE
Q 018474 52 NHPEDVSVVVSKGALYTATRDGWVKYFILHNETLVNWKH-IDSQSLLGLTTTKDGG-VILCDNEKGLLKVT-EEG--VEA 126 (355)
Q Consensus 52 ~~p~~i~~d~~~g~l~~~~~~g~i~~~~~~~g~~~~~~~-~~~~p~~gl~~d~~g~-L~v~~~~~gl~~~~-~~g--~~~ 126 (355)
....++.+.++++.++++..+|.+..++..+++...... ...... .+.+.++++ ++++...+.+..++ .++ ...
T Consensus 10 ~~i~~~~~~~~~~~l~~~~~~g~i~i~~~~~~~~~~~~~~~~~~i~-~~~~~~~~~~l~~~~~~~~i~i~~~~~~~~~~~ 88 (289)
T cd00200 10 GGVTCVAFSPDGKLLATGSGDGTIKVWDLETGELLRTLKGHTGPVR-DVAASADGTYLASGSSDKTIRLWDLETGECVRT 88 (289)
T ss_pred CCEEEEEEcCCCCEEEEeecCcEEEEEEeeCCCcEEEEecCCccee-EEEECCCCCEEEEEcCCCeEEEEEcCcccceEE
Confidence 445678888666778888889999999886664332222 223344 677777775 55555444566666 343 444
Q ss_pred EcCCcCCcccEEEccCCcEEEEeCCCCCCCccccccccccCCCCeEEEEeCCCCeEEEeec-cccccccEEEeCCCCEEE
Q 018474 127 IVPDASFTNDVIAASDGTLYFTVASTKYTPTDFYKDMAEGKPYGQLRKYDPKLKETTVLHE-GFYFANGIALSKNEDFVV 205 (355)
Q Consensus 127 ~~~~~~~~~~l~~d~dG~ly~~d~~~~~~~~~~~~~~~~~~~~g~l~~~dp~~~~~~~~~~-~~~~pngi~~~~dg~~l~ 205 (355)
+......+.++.+++++.++++... .+.+..||..+++...... .......++++++++.++
T Consensus 89 ~~~~~~~i~~~~~~~~~~~~~~~~~-----------------~~~i~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~ 151 (289)
T cd00200 89 LTGHTSYVSSVAFSPDGRILSSSSR-----------------DKTIKVWDVETGKCLTTLRGHTDWVNSVAFSPDGTFVA 151 (289)
T ss_pred EeccCCcEEEEEEcCCCCEEEEecC-----------------CCeEEEEECCCcEEEEEeccCCCcEEEEEEcCcCCEEE
Confidence 4433346788888888877776542 4578888887555433322 223457789999977444
Q ss_pred EEeCCCCeEEEEEeCCCCCcceeEecccCCCCcCceEECCCCC-EEEEe
Q 018474 206 VCESWKFRCRRYWLKGDRAGILDAFIENLPGGPDNINLAPDGS-FWIGL 253 (355)
Q Consensus 206 v~~~~~~~i~~~~~~~~~~~~~~~~~~~~~g~p~~i~~d~~G~-lwv~~ 253 (355)
+....+.|..|++...+. ...+. ........+.++++|+ ++++.
T Consensus 152 -~~~~~~~i~i~d~~~~~~--~~~~~-~~~~~i~~~~~~~~~~~l~~~~ 196 (289)
T cd00200 152 -SSSQDGTIKLWDLRTGKC--VATLT-GHTGEVNSVAFSPDGEKLLSSS 196 (289)
T ss_pred -EEcCCCcEEEEEcccccc--ceeEe-cCccccceEEECCCcCEEEEec
Confidence 444467888998853221 11121 2222356678888885 55544
No 32
>PRK04792 tolB translocation protein TolB; Provisional
Probab=98.79 E-value=6.6e-06 Score=79.32 Aligned_cols=203 Identities=11% Similarity=0.057 Sum_probs=121.6
Q ss_pred eEEEeeCCCeEEEE-ecC--CEEEEEEcCCCeeEEeeccCCCcccCeEECCCCC-EEEEeCCC---cEEEEcC-CC-eEE
Q 018474 56 DVSVVVSKGALYTA-TRD--GWVKYFILHNETLVNWKHIDSQSLLGLTTTKDGG-VILCDNEK---GLLKVTE-EG-VEA 126 (355)
Q Consensus 56 ~i~~d~~~g~l~~~-~~~--g~i~~~~~~~g~~~~~~~~~~~p~~gl~~d~~g~-L~v~~~~~---gl~~~~~-~g-~~~ 126 (355)
+..+.|++..++.. ..+ ..|+.+|..+++.+.+....+... ..++.++|+ |+++.... .|+.++. ++ .+.
T Consensus 222 ~p~wSPDG~~La~~s~~~g~~~L~~~dl~tg~~~~lt~~~g~~~-~~~wSPDG~~La~~~~~~g~~~Iy~~dl~tg~~~~ 300 (448)
T PRK04792 222 SPAWSPDGRKLAYVSFENRKAEIFVQDIYTQVREKVTSFPGING-APRFSPDGKKLALVLSKDGQPEIYVVDIATKALTR 300 (448)
T ss_pred CceECCCCCEEEEEEecCCCcEEEEEECCCCCeEEecCCCCCcC-CeeECCCCCEEEEEEeCCCCeEEEEEECCCCCeEE
Confidence 56788666666544 333 368999988887665543333344 677888987 65543332 3888884 56 666
Q ss_pred EcCCcCCcccEEEccCCc-EEEEeCCCCCCCccccccccccCCCCeEEEEeCCCCeEEEeeccccccccEEEeCCCCEEE
Q 018474 127 IVPDASFTNDVIAASDGT-LYFTVASTKYTPTDFYKDMAEGKPYGQLRKYDPKLKETTVLHEGFYFANGIALSKNEDFVV 205 (355)
Q Consensus 127 ~~~~~~~~~~l~~d~dG~-ly~~d~~~~~~~~~~~~~~~~~~~~g~l~~~dp~~~~~~~~~~~~~~pngi~~~~dg~~l~ 205 (355)
+...........+++||+ |+++... .....+|++|.++++.+.+..........+++|||+.++
T Consensus 301 lt~~~~~~~~p~wSpDG~~I~f~s~~---------------~g~~~Iy~~dl~~g~~~~Lt~~g~~~~~~~~SpDG~~l~ 365 (448)
T PRK04792 301 ITRHRAIDTEPSWHPDGKSLIFTSER---------------GGKPQIYRVNLASGKVSRLTFEGEQNLGGSITPDGRSMI 365 (448)
T ss_pred CccCCCCccceEECCCCCEEEEEECC---------------CCCceEEEEECCCCCEEEEecCCCCCcCeeECCCCCEEE
Confidence 554333445678899984 6665322 112369999998888766543222234568999999988
Q ss_pred EEeCCC--CeEEEEEeCCCCCcceeEecccCCCCcCceEECCCCC-EEEEeecCCchhhHhhhcchhHHHHHHhccchhh
Q 018474 206 VCESWK--FRCRRYWLKGDRAGILDAFIENLPGGPDNINLAPDGS-FWIGLIKMNQTGVRAIQKCREKWELLDAYPGLIS 282 (355)
Q Consensus 206 v~~~~~--~~i~~~~~~~~~~~~~~~~~~~~~g~p~~i~~d~~G~-lwv~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 282 (355)
++.... ..|+++++++.. .+.+... .......++++|+ ++++....
T Consensus 366 ~~~~~~g~~~I~~~dl~~g~---~~~lt~~--~~d~~ps~spdG~~I~~~~~~~-------------------------- 414 (448)
T PRK04792 366 MVNRTNGKFNIARQDLETGA---MQVLTST--RLDESPSVAPNGTMVIYSTTYQ-------------------------- 414 (448)
T ss_pred EEEecCCceEEEEEECCCCC---eEEccCC--CCCCCceECCCCCEEEEEEecC--------------------------
Confidence 876543 367778875532 2222111 1112235677886 44444331
Q ss_pred cccCCCCCCceEEEEEeCCCCeEEEEEECCCC
Q 018474 283 LLLPMGSDAGARVVKVDGNDGKIIRDFNDPDA 314 (355)
Q Consensus 283 ~~~~~~~~~~~~v~~~~~~~g~~~~~~~~~~g 314 (355)
....++.++. +|+....+..+.|
T Consensus 415 --------g~~~l~~~~~-~G~~~~~l~~~~g 437 (448)
T PRK04792 415 --------GKQVLAAVSI-DGRFKARLPAGQG 437 (448)
T ss_pred --------CceEEEEEEC-CCCceEECcCCCC
Confidence 1134777788 8887777765544
No 33
>TIGR03300 assembly_YfgL outer membrane assembly lipoprotein YfgL. Members of this protein family are YfgL, a lipoprotein component of a complex that acts protein insertion into the bacterial outer membrane. Other members of this complex are NlpB, YfiO, and YaeT. This protein contains multiple copies of a repeat that, in other contexts, are associated with binding of the coenzyme PQQ.
Probab=98.76 E-value=4.3e-05 Score=72.02 Aligned_cols=221 Identities=14% Similarity=0.097 Sum_probs=118.8
Q ss_pred ceEEEeeCCCeEEEEecCCEEEEEEcCCCeeEEeeccCCCcccCeEECCCCCEEEEeCCCcEEEEcC-CC-eEEEcCCcC
Q 018474 55 EDVSVVVSKGALYTATRDGWVKYFILHNETLVNWKHIDSQSLLGLTTTKDGGVILCDNEKGLLKVTE-EG-VEAIVPDAS 132 (355)
Q Consensus 55 ~~i~~d~~~g~l~~~~~~g~i~~~~~~~g~~~~~~~~~~~p~~gl~~d~~g~L~v~~~~~gl~~~~~-~g-~~~~~~~~~ 132 (355)
.+++++ ++.+|+++.+|.++.+|..+|+..--.........+.+.+ ++++|+++..+.++.++. +| +..-.....
T Consensus 59 ~~p~v~--~~~v~v~~~~g~v~a~d~~tG~~~W~~~~~~~~~~~p~v~-~~~v~v~~~~g~l~ald~~tG~~~W~~~~~~ 135 (377)
T TIGR03300 59 LQPAVA--GGKVYAADADGTVVALDAETGKRLWRVDLDERLSGGVGAD-GGLVFVGTEKGEVIALDAEDGKELWRAKLSS 135 (377)
T ss_pred cceEEE--CCEEEEECCCCeEEEEEccCCcEeeeecCCCCcccceEEc-CCEEEEEcCCCEEEEEECCCCcEeeeeccCc
Confidence 345565 7799999999999999998887542112222222144554 678999987777999995 77 322111101
Q ss_pred Cccc-EEEccCCcEEEEeCCCCCCCccccccccccCCCCeEEEEeCCCCeEEEeeccccc------cccEEEeCCCCEEE
Q 018474 133 FTND-VIAASDGTLYFTVASTKYTPTDFYKDMAEGKPYGQLRKYDPKLKETTVLHEGFYF------ANGIALSKNEDFVV 205 (355)
Q Consensus 133 ~~~~-l~~d~dG~ly~~d~~~~~~~~~~~~~~~~~~~~g~l~~~dp~~~~~~~~~~~~~~------pngi~~~~dg~~l~ 205 (355)
.+.+ .++ .++.+|+... .+.++.+|+++|+.......... ....++. ++ .+|
T Consensus 136 ~~~~~p~v-~~~~v~v~~~------------------~g~l~a~d~~tG~~~W~~~~~~~~~~~~~~~sp~~~-~~-~v~ 194 (377)
T TIGR03300 136 EVLSPPLV-ANGLVVVRTN------------------DGRLTALDAATGERLWTYSRVTPALTLRGSASPVIA-DG-GVL 194 (377)
T ss_pred eeecCCEE-ECCEEEEECC------------------CCeEEEEEcCCCceeeEEccCCCceeecCCCCCEEE-CC-EEE
Confidence 1111 122 2456776532 46799999988876433221110 0111222 33 455
Q ss_pred EEeCCCCeEEEEEeCCCCC-cceeEecccCCCC---------cCceEECCCCCEEEEeecCCchhhHhhhcchhHHHHHH
Q 018474 206 VCESWKFRCRRYWLKGDRA-GILDAFIENLPGG---------PDNINLAPDGSFWIGLIKMNQTGVRAIQKCREKWELLD 275 (355)
Q Consensus 206 v~~~~~~~i~~~~~~~~~~-~~~~~~~~~~~g~---------p~~i~~d~~G~lwv~~~~~~~~~~~~~~~~~~~~~~~~ 275 (355)
+. ...+.+..++.+..+. .+.+ +. ...+. .....+ .++.+|+++..
T Consensus 195 ~~-~~~g~v~ald~~tG~~~W~~~-~~-~~~g~~~~~~~~~~~~~p~~-~~~~vy~~~~~-------------------- 250 (377)
T TIGR03300 195 VG-FAGGKLVALDLQTGQPLWEQR-VA-LPKGRTELERLVDVDGDPVV-DGGQVYAVSYQ-------------------- 250 (377)
T ss_pred EE-CCCCEEEEEEccCCCEeeeec-cc-cCCCCCchhhhhccCCccEE-ECCEEEEEEcC--------------------
Confidence 54 3457888888743321 1111 10 00000 000112 24677777654
Q ss_pred hccchhhcccCCCCCCceEEEEEeCCCCeEEEEEECCCCCcccceeEEEEeCCEEEEeecCCCeEEEeeCCC
Q 018474 276 AYPGLISLLLPMGSDAGARVVKVDGNDGKIIRDFNDPDATYISFVTSAAEFDGNLYLASLQSNFIGILPLDG 347 (355)
Q Consensus 276 ~~~~~~~~~~~~~~~~~~~v~~~~~~~g~~~~~~~~~~g~~~~~~~~~~~~~g~L~v~~~~~~~i~~~~~~~ 347 (355)
+.++++|.++|+..-.... + ........++++|+++. ...|..++..+
T Consensus 251 -----------------g~l~a~d~~tG~~~W~~~~--~----~~~~p~~~~~~vyv~~~-~G~l~~~d~~t 298 (377)
T TIGR03300 251 -----------------GRVAALDLRSGRVLWKRDA--S----SYQGPAVDDNRLYVTDA-DGVVVALDRRS 298 (377)
T ss_pred -----------------CEEEEEECCCCcEEEeecc--C----CccCceEeCCEEEEECC-CCeEEEEECCC
Confidence 4688899877875443321 1 11223345788888764 56677776643
No 34
>KOG1214 consensus Nidogen and related basement membrane protein proteins [Cell wall/membrane/envelope biogenesis; Extracellular structures]
Probab=98.75 E-value=4e-07 Score=88.66 Aligned_cols=183 Identities=13% Similarity=0.109 Sum_probs=118.8
Q ss_pred CCCceEEEeeCCCeEEE-EecCCEEEEEEcCCCeeEEe-eccCCCcccCeEECCCC-CEEEEeCCCcEEEEc-CCC--eE
Q 018474 52 NHPEDVSVVVSKGALYT-ATRDGWVKYFILHNETLVNW-KHIDSQSLLGLTTTKDG-GVILCDNEKGLLKVT-EEG--VE 125 (355)
Q Consensus 52 ~~p~~i~~d~~~g~l~~-~~~~g~i~~~~~~~g~~~~~-~~~~~~p~~gl~~d~~g-~L~v~~~~~gl~~~~-~~g--~~ 125 (355)
.-|.+|.+|-.+..+|. ......|.+-....++.+.+ ......|. ||++|.-+ ++|.+|+...-+-+. .+| .+
T Consensus 1025 ~IiVGidfDC~e~mvyWtDv~g~SI~rasL~G~Ep~ti~n~~L~SPE-GiAVDh~~Rn~ywtDS~lD~IevA~LdG~~rk 1103 (1289)
T KOG1214|consen 1025 SIIVGIDFDCRERMVYWTDVAGRSISRASLEGAEPETIVNSGLISPE-GIAVDHIRRNMYWTDSVLDKIEVALLDGSERK 1103 (1289)
T ss_pred ceeeeeecccccceEEEeecCCCccccccccCCCCceeecccCCCcc-ceeeeeccceeeeeccccchhheeecCCceee
Confidence 45677778855555554 44455666666654444433 34456799 99999655 599998764322222 255 33
Q ss_pred EE-cCCcCCcccEEEcc-CCcEEEEeCCCCCCCccccccccccCCCCeEEEEeCCCCeEE-EeeccccccccEEEeCCCC
Q 018474 126 AI-VPDASFTNDVIAAS-DGTLYFTVASTKYTPTDFYKDMAEGKPYGQLRKYDPKLKETT-VLHEGFYFANGIALSKNED 202 (355)
Q Consensus 126 ~~-~~~~~~~~~l~~d~-dG~ly~~d~~~~~~~~~~~~~~~~~~~~g~l~~~dp~~~~~~-~~~~~~~~pngi~~~~dg~ 202 (355)
.+ ....-.|++|++|+ .|+||++|.... +-.|-+-+.+++..+ .+.+++..|||+.|+|..+
T Consensus 1104 vLf~tdLVNPR~iv~D~~rgnLYwtDWnRe---------------nPkIets~mDG~NrRilin~DigLPNGLtfdpfs~ 1168 (1289)
T KOG1214|consen 1104 VLFYTDLVNPRAIVVDPIRGNLYWTDWNRE---------------NPKIETSSMDGENRRILINTDIGLPNGLTFDPFSK 1168 (1289)
T ss_pred EEEeecccCcceEEeecccCceeecccccc---------------CCcceeeccCCccceEEeecccCCCCCceeCcccc
Confidence 33 34447899999998 679999997621 112322222222222 3356788999999999999
Q ss_pred EEEEEeCCCCeEEEEEeCCCCCcceeEecccCCCCcCceEECCCCCEEEEeec
Q 018474 203 FVVVCESWKFRCRRYWLKGDRAGILDAFIENLPGGPDNINLAPDGSFWIGLIK 255 (355)
Q Consensus 203 ~l~v~~~~~~~i~~~~~~~~~~~~~~~~~~~~~g~p~~i~~d~~G~lwv~~~~ 255 (355)
.|-|.+.+.+++.+...++. +.+. ...++. +|-++.-+.+. +|..++.
T Consensus 1169 ~LCWvDAGt~rleC~~p~g~--gRR~-i~~~Lq-YPF~itsy~~~-fY~TDWk 1216 (1289)
T KOG1214|consen 1169 LLCWVDAGTKRLECTLPDGT--GRRV-IQNNLQ-YPFSITSYADH-FYHTDWK 1216 (1289)
T ss_pred eeeEEecCCcceeEecCCCC--cchh-hhhccc-Cceeeeecccc-ceeeccc
Confidence 99999999999999998763 3322 222443 68888877665 7777766
No 35
>PF02239 Cytochrom_D1: Cytochrome D1 heme domain; PDB: 1NNO_B 1HZU_A 1N15_B 1N50_A 1GJQ_A 1BL9_B 1NIR_B 1N90_B 1HZV_A 1AOQ_A ....
Probab=98.73 E-value=2e-05 Score=73.88 Aligned_cols=173 Identities=16% Similarity=0.128 Sum_probs=102.8
Q ss_pred CCeEEEEec-CCEEEEEEcCCCeeEEeeccCCCcccCeEECCCCC-EEEEeCCCcEEEEcC-CC--eEEEcCCcCCcccE
Q 018474 63 KGALYTATR-DGWVKYFILHNETLVNWKHIDSQSLLGLTTTKDGG-VILCDNEKGLLKVTE-EG--VEAIVPDASFTNDV 137 (355)
Q Consensus 63 ~g~l~~~~~-~g~i~~~~~~~g~~~~~~~~~~~p~~gl~~d~~g~-L~v~~~~~gl~~~~~-~g--~~~~~~~~~~~~~l 137 (355)
++.+|+... +|.|..+|.++.+.......+..++.++++.+||+ +|+++..+.+..+|. ++ +..+... ..+.++
T Consensus 5 ~~l~~V~~~~~~~v~viD~~t~~~~~~i~~~~~~h~~~~~s~Dgr~~yv~~rdg~vsviD~~~~~~v~~i~~G-~~~~~i 83 (369)
T PF02239_consen 5 GNLFYVVERGSGSVAVIDGATNKVVARIPTGGAPHAGLKFSPDGRYLYVANRDGTVSVIDLATGKVVATIKVG-GNPRGI 83 (369)
T ss_dssp GGEEEEEEGGGTEEEEEETTT-SEEEEEE-STTEEEEEE-TT-SSEEEEEETTSEEEEEETTSSSEEEEEE-S-SEEEEE
T ss_pred ccEEEEEecCCCEEEEEECCCCeEEEEEcCCCCceeEEEecCCCCEEEEEcCCCeEEEEECCcccEEEEEecC-CCcceE
Confidence 445556554 69999999988765544444444441577888887 899876556778884 55 5555444 579999
Q ss_pred EEccCCc-EEEEeCCCCCCCccccccccccCCCCeEEEEeCCCCeEEEeeccc--------cccccEEEeCCCCEEEEEe
Q 018474 138 IAASDGT-LYFTVASTKYTPTDFYKDMAEGKPYGQLRKYDPKLKETTVLHEGF--------YFANGIALSKNEDFVVVCE 208 (355)
Q Consensus 138 ~~d~dG~-ly~~d~~~~~~~~~~~~~~~~~~~~g~l~~~dp~~~~~~~~~~~~--------~~pngi~~~~dg~~l~v~~ 208 (355)
++++||+ +|+++.. .+.+..+|.++.+........ ....+|..++.+..++++-
T Consensus 84 ~~s~DG~~~~v~n~~-----------------~~~v~v~D~~tle~v~~I~~~~~~~~~~~~Rv~aIv~s~~~~~fVv~l 146 (369)
T PF02239_consen 84 AVSPDGKYVYVANYE-----------------PGTVSVIDAETLEPVKTIPTGGMPVDGPESRVAAIVASPGRPEFVVNL 146 (369)
T ss_dssp EE--TTTEEEEEEEE-----------------TTEEEEEETTT--EEEEEE--EE-TTTS---EEEEEE-SSSSEEEEEE
T ss_pred EEcCCCCEEEEEecC-----------------CCceeEeccccccceeecccccccccccCCCceeEEecCCCCEEEEEE
Confidence 9999995 6666533 457888898776543322211 1234677788888666666
Q ss_pred CCCCeEEEEEeCCCCCcceeEecccCCCCcCceEECCCCCEEEEeec
Q 018474 209 SWKFRCRRYWLKGDRAGILDAFIENLPGGPDNINLAPDGSFWIGLIK 255 (355)
Q Consensus 209 ~~~~~i~~~~~~~~~~~~~~~~~~~~~g~p~~i~~d~~G~lwv~~~~ 255 (355)
-..+.|+.++.+..+.-..+ .. ....+|.+..+|++|+++++...
T Consensus 147 kd~~~I~vVdy~d~~~~~~~-~i-~~g~~~~D~~~dpdgry~~va~~ 191 (369)
T PF02239_consen 147 KDTGEIWVVDYSDPKNLKVT-TI-KVGRFPHDGGFDPDGRYFLVAAN 191 (369)
T ss_dssp TTTTEEEEEETTTSSCEEEE-EE-E--TTEEEEEE-TTSSEEEEEEG
T ss_pred ccCCeEEEEEecccccccee-ee-cccccccccccCcccceeeeccc
Confidence 66789999997654211111 22 23346888999999997666543
No 36
>PRK04922 tolB translocation protein TolB; Provisional
Probab=98.71 E-value=1.4e-05 Score=76.88 Aligned_cols=204 Identities=12% Similarity=0.083 Sum_probs=122.7
Q ss_pred ceEEEeeCCCeEEEEec---CCEEEEEEcCCCeeEEeeccCCCcccCeEECCCCC-EEEEeCCC---cEEEEcC-CC-eE
Q 018474 55 EDVSVVVSKGALYTATR---DGWVKYFILHNETLVNWKHIDSQSLLGLTTTKDGG-VILCDNEK---GLLKVTE-EG-VE 125 (355)
Q Consensus 55 ~~i~~d~~~g~l~~~~~---~g~i~~~~~~~g~~~~~~~~~~~p~~gl~~d~~g~-L~v~~~~~---gl~~~~~-~g-~~ 125 (355)
.+.++.|++..++..+. ...|++++..+++.+.+....+... ...+.++|+ |+++.... .|+.++. +| .+
T Consensus 207 ~~p~wSpDg~~la~~s~~~~~~~l~~~dl~~g~~~~l~~~~g~~~-~~~~SpDG~~l~~~~s~~g~~~Iy~~d~~~g~~~ 285 (433)
T PRK04922 207 LSPAWSPDGKKLAYVSFERGRSAIYVQDLATGQRELVASFRGING-APSFSPDGRRLALTLSRDGNPEIYVMDLGSRQLT 285 (433)
T ss_pred ccccCCCCCCEEEEEecCCCCcEEEEEECCCCCEEEeccCCCCcc-CceECCCCCEEEEEEeCCCCceEEEEECCCCCeE
Confidence 35567766666665543 3469999998887766543333344 678889996 54443222 4888884 66 66
Q ss_pred EEcCCcCCcccEEEccCCc-EEEEeCCCCCCCccccccccccCCCCeEEEEeCCCCeEEEeeccccccccEEEeCCCCEE
Q 018474 126 AIVPDASFTNDVIAASDGT-LYFTVASTKYTPTDFYKDMAEGKPYGQLRKYDPKLKETTVLHEGFYFANGIALSKNEDFV 204 (355)
Q Consensus 126 ~~~~~~~~~~~l~~d~dG~-ly~~d~~~~~~~~~~~~~~~~~~~~g~l~~~dp~~~~~~~~~~~~~~pngi~~~~dg~~l 204 (355)
.+...........+++||+ |+++... .....+|.+|.++++.+.+..........+++|||+.+
T Consensus 286 ~lt~~~~~~~~~~~spDG~~l~f~sd~---------------~g~~~iy~~dl~~g~~~~lt~~g~~~~~~~~SpDG~~I 350 (433)
T PRK04922 286 RLTNHFGIDTEPTWAPDGKSIYFTSDR---------------GGRPQIYRVAASGGSAERLTFQGNYNARASVSPDGKKI 350 (433)
T ss_pred ECccCCCCccceEECCCCCEEEEEECC---------------CCCceEEEEECCCCCeEEeecCCCCccCEEECCCCCEE
Confidence 6544323345678999995 6665322 01236899998777766554332333467999999988
Q ss_pred EEEeCCC--CeEEEEEeCCCCCcceeEecccCCCCcCceEECCCCCE-EEEeecCCchhhHhhhcchhHHHHHHhccchh
Q 018474 205 VVCESWK--FRCRRYWLKGDRAGILDAFIENLPGGPDNINLAPDGSF-WIGLIKMNQTGVRAIQKCREKWELLDAYPGLI 281 (355)
Q Consensus 205 ~v~~~~~--~~i~~~~~~~~~~~~~~~~~~~~~g~p~~i~~d~~G~l-wv~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 281 (355)
+++.... ..|+.+++++.. .+.+... .......++++|+. +++...
T Consensus 351 a~~~~~~~~~~I~v~d~~~g~---~~~Lt~~--~~~~~p~~spdG~~i~~~s~~-------------------------- 399 (433)
T PRK04922 351 AMVHGSGGQYRIAVMDLSTGS---VRTLTPG--SLDESPSFAPNGSMVLYATRE-------------------------- 399 (433)
T ss_pred EEEECCCCceeEEEEECCCCC---eEECCCC--CCCCCceECCCCCEEEEEEec--------------------------
Confidence 8875432 368888875432 2222211 11234567888974 433332
Q ss_pred hcccCCCCCCceEEEEEeCCCCeEEEEEECCCC
Q 018474 282 SLLLPMGSDAGARVVKVDGNDGKIIRDFNDPDA 314 (355)
Q Consensus 282 ~~~~~~~~~~~~~v~~~~~~~g~~~~~~~~~~g 314 (355)
.....++.++. +|.....+..+.|
T Consensus 400 --------~g~~~L~~~~~-~g~~~~~l~~~~g 423 (433)
T PRK04922 400 --------GGRGVLAAVST-DGRVRQRLVSADG 423 (433)
T ss_pred --------CCceEEEEEEC-CCCceEEcccCCC
Confidence 11246888898 8877666655444
No 37
>KOG1214 consensus Nidogen and related basement membrane protein proteins [Cell wall/membrane/envelope biogenesis; Extracellular structures]
Probab=98.71 E-value=1.6e-06 Score=84.59 Aligned_cols=194 Identities=13% Similarity=0.140 Sum_probs=126.3
Q ss_pred CCcccCeEEC-CCCCEEEEeCCCc-EEEEcCCC--eEEE-cCCcCCcccEEEccCC-cEEEEeCCCCCCCcccccccccc
Q 018474 93 SQSLLGLTTT-KDGGVILCDNEKG-LLKVTEEG--VEAI-VPDASFTNDVIAASDG-TLYFTVASTKYTPTDFYKDMAEG 166 (355)
Q Consensus 93 ~~p~~gl~~d-~~g~L~v~~~~~g-l~~~~~~g--~~~~-~~~~~~~~~l~~d~dG-~ly~~d~~~~~~~~~~~~~~~~~ 166 (355)
.-|. ||.+| .+..+|.+|..+. |-+-...| -+.+ -.....|.+|++|.-+ ++|++|+.-
T Consensus 1025 ~IiV-GidfDC~e~mvyWtDv~g~SI~rasL~G~Ep~ti~n~~L~SPEGiAVDh~~Rn~ywtDS~l-------------- 1089 (1289)
T KOG1214|consen 1025 SIIV-GIDFDCRERMVYWTDVAGRSISRASLEGAEPETIVNSGLISPEGIAVDHIRRNMYWTDSVL-------------- 1089 (1289)
T ss_pred ceee-eeecccccceEEEeecCCCccccccccCCCCceeecccCCCccceeeeeccceeeeecccc--------------
Confidence 3467 99999 5556888886643 44433445 4444 3445899999999765 899999761
Q ss_pred CCCCeEEEEeCCCCeEEEeeccccccccEEEeCCCCEEEEEeCCCC--eEEEEEeCCCCCcceeEecccCCCCcCceEEC
Q 018474 167 KPYGQLRKYDPKLKETTVLHEGFYFANGIALSKNEDFVVVCESWKF--RCRRYWLKGDRAGILDAFIENLPGGPDNINLA 244 (355)
Q Consensus 167 ~~~g~l~~~dp~~~~~~~~~~~~~~pngi~~~~dg~~l~v~~~~~~--~i~~~~~~~~~~~~~~~~~~~~~g~p~~i~~d 244 (355)
..-.+-..|- +.+...+.+++.+|.+|++++-+..|||++..+. .|-+.+++|. +.++++..--++|+|+.+|
T Consensus 1090 -D~IevA~LdG-~~rkvLf~tdLVNPR~iv~D~~rgnLYwtDWnRenPkIets~mDG~---NrRilin~DigLPNGLtfd 1164 (1289)
T KOG1214|consen 1090 -DKIEVALLDG-SERKVLFYTDLVNPRAIVVDPIRGNLYWTDWNRENPKIETSSMDGE---NRRILINTDIGLPNGLTFD 1164 (1289)
T ss_pred -chhheeecCC-ceeeEEEeecccCcceEEeecccCceeeccccccCCcceeeccCCc---cceEEeecccCCCCCceeC
Confidence 0112333342 1222344678999999999999999999998654 3666666653 4456665555789999999
Q ss_pred CCCC--EEEEeecCCchhhHhhhcchhHHHHHHhccchhhcccCCCCCCceEEEEEeCCCCeEEEEEECCCCCcccceeE
Q 018474 245 PDGS--FWIGLIKMNQTGVRAIQKCREKWELLDAYPGLISLLLPMGSDAGARVVKVDGNDGKIIRDFNDPDATYISFVTS 322 (355)
Q Consensus 245 ~~G~--lwv~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~g~~~~~~~~~~g~~~~~~~~ 322 (355)
+..+ -||-... ..+-++.+ +|.--+... ++ .....+
T Consensus 1165 pfs~~LCWvDAGt-------------------------------------~rleC~~p-~g~gRR~i~--~~--LqYPF~ 1202 (1289)
T KOG1214|consen 1165 PFSKLLCWVDAGT-------------------------------------KRLECTLP-DGTGRRVIQ--NN--LQYPFS 1202 (1289)
T ss_pred cccceeeEEecCC-------------------------------------cceeEecC-CCCcchhhh--hc--ccCcee
Confidence 8775 4775543 23555566 543322221 23 224455
Q ss_pred EEEeCCEEEEeecCCCeEEEeeCCCC
Q 018474 323 AAEFDGNLYLASLQSNFIGILPLDGP 348 (355)
Q Consensus 323 ~~~~~g~L~v~~~~~~~i~~~~~~~~ 348 (355)
+...++++|.++++.|+|..+++-..
T Consensus 1203 itsy~~~fY~TDWk~n~vvsv~~~~~ 1228 (1289)
T KOG1214|consen 1203 ITSYADHFYHTDWKRNGVVSVNKHSG 1228 (1289)
T ss_pred eeeccccceeeccccCceEEeecccc
Confidence 66667779999999999988876543
No 38
>KOG1446 consensus Histone H3 (Lys4) methyltransferase complex and RNA cleavage factor II complex, subunit SWD2 [RNA processing and modification; Chromatin structure and dynamics; Posttranslational modification, protein turnover, chaperones]
Probab=98.71 E-value=0.0001 Score=64.86 Aligned_cols=239 Identities=12% Similarity=0.083 Sum_probs=145.6
Q ss_pred CCCCceEEEeeCCCeEEEEecCCEEEEEEcCCCeeEEeeccC-CCcccCeEE-CCCCCEEEEeCC-C-cEEEEc--CCC-
Q 018474 51 VNHPEDVSVVVSKGALYTATRDGWVKYFILHNETLVNWKHID-SQSLLGLTT-TKDGGVILCDNE-K-GLLKVT--EEG- 123 (355)
Q Consensus 51 ~~~p~~i~~d~~~g~l~~~~~~g~i~~~~~~~g~~~~~~~~~-~~p~~gl~~-d~~g~L~v~~~~-~-gl~~~~--~~g- 123 (355)
...+++|.++.++..+.+++.+..+..+|..+|+........ -.+. -..+ ..+.++..+... + -|-.++ .+.
T Consensus 14 ~~~i~sl~fs~~G~~litss~dDsl~LYd~~~g~~~~ti~skkyG~~-~~~Fth~~~~~i~sStk~d~tIryLsl~dNky 92 (311)
T KOG1446|consen 14 NGKINSLDFSDDGLLLITSSEDDSLRLYDSLSGKQVKTINSKKYGVD-LACFTHHSNTVIHSSTKEDDTIRYLSLHDNKY 92 (311)
T ss_pred CCceeEEEecCCCCEEEEecCCCeEEEEEcCCCceeeEeeccccccc-EEEEecCCceEEEccCCCCCceEEEEeecCce
Confidence 367899999965666666677888999999888655433211 1122 2222 334444444331 2 233333 244
Q ss_pred eEEEcCCcCCcccEEEccCCcEEEEeCCCCCCCccccccccccCCCCeEEEEeCCCCeEEEeeccccccccEEEeCCCCE
Q 018474 124 VEAIVPDASFTNDVIAASDGTLYFTVASTKYTPTDFYKDMAEGKPYGQLRKYDPKLKETTVLHEGFYFANGIALSKNEDF 203 (355)
Q Consensus 124 ~~~~~~~~~~~~~l~~d~dG~ly~~d~~~~~~~~~~~~~~~~~~~~g~l~~~dp~~~~~~~~~~~~~~pngi~~~~dg~~ 203 (355)
++.+......+++|.+.|-+..+++.+. ...+..||.+..+=+.+.. +..+.-.|++|+|-
T Consensus 93 lRYF~GH~~~V~sL~~sP~~d~FlS~S~-----------------D~tvrLWDlR~~~cqg~l~-~~~~pi~AfDp~GL- 153 (311)
T KOG1446|consen 93 LRYFPGHKKRVNSLSVSPKDDTFLSSSL-----------------DKTVRLWDLRVKKCQGLLN-LSGRPIAAFDPEGL- 153 (311)
T ss_pred EEEcCCCCceEEEEEecCCCCeEEeccc-----------------CCeEEeeEecCCCCceEEe-cCCCcceeECCCCc-
Confidence 6666666678999999998888887654 3467777765443332222 23455689999996
Q ss_pred EEEEeCCCCeEEEEEeCCCCCcceeEecccCCC--CcCceEECCCCC-EEEEeecCCchhhHhhhcchhHHHHHHhccch
Q 018474 204 VVVCESWKFRCRRYWLKGDRAGILDAFIENLPG--GPDNINLAPDGS-FWIGLIKMNQTGVRAIQKCREKWELLDAYPGL 280 (355)
Q Consensus 204 l~v~~~~~~~i~~~~~~~~~~~~~~~~~~~~~g--~p~~i~~d~~G~-lwv~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 280 (355)
++.+......|..||++.-..+.++.|.-..+. --.++.++++|+ +.+++..
T Consensus 154 ifA~~~~~~~IkLyD~Rs~dkgPF~tf~i~~~~~~ew~~l~FS~dGK~iLlsT~~------------------------- 208 (311)
T KOG1446|consen 154 IFALANGSELIKLYDLRSFDKGPFTTFSITDNDEAEWTDLEFSPDGKSILLSTNA------------------------- 208 (311)
T ss_pred EEEEecCCCeEEEEEecccCCCCceeEccCCCCccceeeeEEcCCCCEEEEEeCC-------------------------
Confidence 555555566899999865444555555322111 124578999997 6666654
Q ss_pred hhcccCCCCCCceEEEEEeCCCCeEEEEEECCCCCcccceeEEEE-eCCEEEEeecCCCeEEEeeCCC
Q 018474 281 ISLLLPMGSDAGARVVKVDGNDGKIIRDFNDPDATYISFVTSAAE-FDGNLYLASLQSNFIGILPLDG 347 (355)
Q Consensus 281 ~~~~~~~~~~~~~~v~~~~~~~g~~~~~~~~~~g~~~~~~~~~~~-~~g~L~v~~~~~~~i~~~~~~~ 347 (355)
+-+..+|.=+|.....|+...+. ......++. -+++..+++....+|..+++.+
T Consensus 209 ------------s~~~~lDAf~G~~~~tfs~~~~~-~~~~~~a~ftPds~Fvl~gs~dg~i~vw~~~t 263 (311)
T KOG1446|consen 209 ------------SFIYLLDAFDGTVKSTFSGYPNA-GNLPLSATFTPDSKFVLSGSDDGTIHVWNLET 263 (311)
T ss_pred ------------CcEEEEEccCCcEeeeEeeccCC-CCcceeEEECCCCcEEEEecCCCcEEEEEcCC
Confidence 34666665488888888764322 112233444 4577777777788888888744
No 39
>PRK05137 tolB translocation protein TolB; Provisional
Probab=98.69 E-value=4.5e-05 Score=73.40 Aligned_cols=158 Identities=11% Similarity=0.026 Sum_probs=92.3
Q ss_pred EEEEEEcCCCeeEEeeccCCCcccCeEECCCCC-EEEEeCC---CcEEEEcC-CC-eEEEcCCcCCcccEEEccCC-cEE
Q 018474 74 WVKYFILHNETLVNWKHIDSQSLLGLTTTKDGG-VILCDNE---KGLLKVTE-EG-VEAIVPDASFTNDVIAASDG-TLY 146 (355)
Q Consensus 74 ~i~~~~~~~g~~~~~~~~~~~p~~gl~~d~~g~-L~v~~~~---~gl~~~~~-~g-~~~~~~~~~~~~~l~~d~dG-~ly 146 (355)
.|+..|...+..+.+........ ...+.+||+ |.++... ..++.++. +| .+.+...........++||| .|.
T Consensus 183 ~l~~~d~dg~~~~~lt~~~~~v~-~p~wSpDG~~lay~s~~~g~~~i~~~dl~~g~~~~l~~~~g~~~~~~~SPDG~~la 261 (435)
T PRK05137 183 RLAIMDQDGANVRYLTDGSSLVL-TPRFSPNRQEITYMSYANGRPRVYLLDLETGQRELVGNFPGMTFAPRFSPDGRKVV 261 (435)
T ss_pred EEEEECCCCCCcEEEecCCCCeE-eeEECCCCCEEEEEEecCCCCEEEEEECCCCcEEEeecCCCcccCcEECCCCCEEE
Confidence 56666664444444433333344 677888886 4333322 34888884 66 55554333344567899999 466
Q ss_pred EEeCCCCCCCccccccccccCCCCeEEEEeCCCCeEEEeeccccccccEEEeCCCCEEEEEeCC--CCeEEEEEeCCCCC
Q 018474 147 FTVASTKYTPTDFYKDMAEGKPYGQLRKYDPKLKETTVLHEGFYFANGIALSKNEDFVVVCESW--KFRCRRYWLKGDRA 224 (355)
Q Consensus 147 ~~d~~~~~~~~~~~~~~~~~~~~g~l~~~dp~~~~~~~~~~~~~~pngi~~~~dg~~l~v~~~~--~~~i~~~~~~~~~~ 224 (355)
++... .....||.+|.++++.+.+..........+++|||+.++++... ...|+++++++...
T Consensus 262 ~~~~~---------------~g~~~Iy~~d~~~~~~~~Lt~~~~~~~~~~~spDG~~i~f~s~~~g~~~Iy~~d~~g~~~ 326 (435)
T PRK05137 262 MSLSQ---------------GGNTDIYTMDLRSGTTTRLTDSPAIDTSPSYSPDGSQIVFESDRSGSPQLYVMNADGSNP 326 (435)
T ss_pred EEEec---------------CCCceEEEEECCCCceEEccCCCCccCceeEcCCCCEEEEEECCCCCCeEEEEECCCCCe
Confidence 65322 11346999999888877665443334557899999988776533 34688888765432
Q ss_pred cceeEecccCCCCcCceEECCCCCEEE
Q 018474 225 GILDAFIENLPGGPDNINLAPDGSFWI 251 (355)
Q Consensus 225 ~~~~~~~~~~~g~p~~i~~d~~G~lwv 251 (355)
+.+... .+.-.....+++|+..+
T Consensus 327 ---~~lt~~-~~~~~~~~~SpdG~~ia 349 (435)
T PRK05137 327 ---RRISFG-GGRYSTPVWSPRGDLIA 349 (435)
T ss_pred ---EEeecC-CCcccCeEECCCCCEEE
Confidence 222111 22223456778886443
No 40
>PRK02889 tolB translocation protein TolB; Provisional
Probab=98.69 E-value=2.7e-05 Score=74.67 Aligned_cols=203 Identities=11% Similarity=0.117 Sum_probs=120.8
Q ss_pred eEEEeeCCCeEEEEec---CCEEEEEEcCCCeeEEeeccCCCcccCeEECCCCC-EEEEeCCC---cEEEEcC-CC-eEE
Q 018474 56 DVSVVVSKGALYTATR---DGWVKYFILHNETLVNWKHIDSQSLLGLTTTKDGG-VILCDNEK---GLLKVTE-EG-VEA 126 (355)
Q Consensus 56 ~i~~d~~~g~l~~~~~---~g~i~~~~~~~g~~~~~~~~~~~p~~gl~~d~~g~-L~v~~~~~---gl~~~~~-~g-~~~ 126 (355)
+..+.|++..++..+. ...|+.+|..+|+...+....+... ..++.+||+ |+++.... .||.++. .+ .+.
T Consensus 200 ~p~wSPDG~~la~~s~~~~~~~I~~~dl~~g~~~~l~~~~g~~~-~~~~SPDG~~la~~~~~~g~~~Iy~~d~~~~~~~~ 278 (427)
T PRK02889 200 SPAWSPDGTKLAYVSFESKKPVVYVHDLATGRRRVVANFKGSNS-APAWSPDGRTLAVALSRDGNSQIYTVNADGSGLRR 278 (427)
T ss_pred cceEcCCCCEEEEEEccCCCcEEEEEECCCCCEEEeecCCCCcc-ceEECCCCCEEEEEEccCCCceEEEEECCCCCcEE
Confidence 5678866766665543 2469999998887766654334445 678889986 54443332 4888874 44 555
Q ss_pred EcCCcCCcccEEEccCCc-EEEEeCCCCCCCccccccccccCCCCeEEEEeCCCCeEEEeeccccccccEEEeCCCCEEE
Q 018474 127 IVPDASFTNDVIAASDGT-LYFTVASTKYTPTDFYKDMAEGKPYGQLRKYDPKLKETTVLHEGFYFANGIALSKNEDFVV 205 (355)
Q Consensus 127 ~~~~~~~~~~l~~d~dG~-ly~~d~~~~~~~~~~~~~~~~~~~~g~l~~~dp~~~~~~~~~~~~~~pngi~~~~dg~~l~ 205 (355)
+........+..+++||+ |+++... .....+|.++..+++.+.+..........+++|||+.++
T Consensus 279 lt~~~~~~~~~~wSpDG~~l~f~s~~---------------~g~~~Iy~~~~~~g~~~~lt~~g~~~~~~~~SpDG~~Ia 343 (427)
T PRK02889 279 LTQSSGIDTEPFFSPDGRSIYFTSDR---------------GGAPQIYRMPASGGAAQRVTFTGSYNTSPRISPDGKLLA 343 (427)
T ss_pred CCCCCCCCcCeEEcCCCCEEEEEecC---------------CCCcEEEEEECCCCceEEEecCCCCcCceEECCCCCEEE
Confidence 544323345578999994 6665322 012368888877776655432222223468999999887
Q ss_pred EEeCCC--CeEEEEEeCCCCCcceeEecccCCCCcCceEECCCCCE-EEEeecCCchhhHhhhcchhHHHHHHhccchhh
Q 018474 206 VCESWK--FRCRRYWLKGDRAGILDAFIENLPGGPDNINLAPDGSF-WIGLIKMNQTGVRAIQKCREKWELLDAYPGLIS 282 (355)
Q Consensus 206 v~~~~~--~~i~~~~~~~~~~~~~~~~~~~~~g~p~~i~~d~~G~l-wv~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 282 (355)
++.... ..|+.+++++.. .+.+... .......+.++|+. +.+....
T Consensus 344 ~~s~~~g~~~I~v~d~~~g~---~~~lt~~--~~~~~p~~spdg~~l~~~~~~~-------------------------- 392 (427)
T PRK02889 344 YISRVGGAFKLYVQDLATGQ---VTALTDT--TRDESPSFAPNGRYILYATQQG-------------------------- 392 (427)
T ss_pred EEEccCCcEEEEEEECCCCC---eEEccCC--CCccCceECCCCCEEEEEEecC--------------------------
Confidence 765432 368888875432 2222211 12244677888874 4443321
Q ss_pred cccCCCCCCceEEEEEeCCCCeEEEEEECCCC
Q 018474 283 LLLPMGSDAGARVVKVDGNDGKIIRDFNDPDA 314 (355)
Q Consensus 283 ~~~~~~~~~~~~v~~~~~~~g~~~~~~~~~~g 314 (355)
....+..++. +|+....+..+.|
T Consensus 393 --------g~~~l~~~~~-~g~~~~~l~~~~g 415 (427)
T PRK02889 393 --------GRSVLAAVSS-DGRIKQRLSVQGG 415 (427)
T ss_pred --------CCEEEEEEEC-CCCceEEeecCCC
Confidence 1245777788 8877666665555
No 41
>KOG1520 consensus Predicted alkaloid synthase/Surface mucin Hemomucin [General function prediction only]
Probab=98.68 E-value=2.9e-07 Score=83.47 Aligned_cols=150 Identities=16% Similarity=0.185 Sum_probs=105.1
Q ss_pred CCCCCCceEEEeeCCCeEEEEecCCEEEEEEcCCCeeEEeecc-CCC----cccCeEECCCCCEEEEeC-----------
Q 018474 49 GCVNHPEDVSVVVSKGALYTATRDGWVKYFILHNETLVNWKHI-DSQ----SLLGLTTTKDGGVILCDN----------- 112 (355)
Q Consensus 49 ~~~~~p~~i~~d~~~g~l~~~~~~g~i~~~~~~~g~~~~~~~~-~~~----p~~gl~~d~~g~L~v~~~----------- 112 (355)
..+..|-+|+++.++|.||++...-+++.+++.+++.+..... .+. .+ ++.+|++|.+|++|+
T Consensus 112 ~~CGRPLGl~f~~~ggdL~VaDAYlGL~~V~p~g~~a~~l~~~~~G~~~kf~N-~ldI~~~g~vyFTDSSsk~~~rd~~~ 190 (376)
T KOG1520|consen 112 PLCGRPLGIRFDKKGGDLYVADAYLGLLKVGPEGGLAELLADEAEGKPFKFLN-DLDIDPEGVVYFTDSSSKYDRRDFVF 190 (376)
T ss_pred cccCCcceEEeccCCCeEEEEecceeeEEECCCCCcceeccccccCeeeeecC-ceeEcCCCeEEEeccccccchhheEE
Confidence 3467899999998788999999887899999977775554332 222 45 788888999999874
Q ss_pred -------CCcEEEEcC-CC-eEEEcCCcCCcccEEEccCCc-EEEEeCCCCCCCccccccccccCCCCeEEEE---eCCC
Q 018474 113 -------EKGLLKVTE-EG-VEAIVPDASFTNDVIAASDGT-LYFTVASTKYTPTDFYKDMAEGKPYGQLRKY---DPKL 179 (355)
Q Consensus 113 -------~~gl~~~~~-~g-~~~~~~~~~~~~~l~~d~dG~-ly~~d~~~~~~~~~~~~~~~~~~~~g~l~~~---dp~~ 179 (355)
.+++++||+ +. .+++.+...++|+++.++|+. +.++... ..++.+| -++-
T Consensus 191 a~l~g~~~GRl~~YD~~tK~~~VLld~L~F~NGlaLS~d~sfvl~~Et~-----------------~~ri~rywi~g~k~ 253 (376)
T KOG1520|consen 191 AALEGDPTGRLFRYDPSTKVTKVLLDGLYFPNGLALSPDGSFVLVAETT-----------------TARIKRYWIKGPKA 253 (376)
T ss_pred eeecCCCccceEEecCcccchhhhhhcccccccccCCCCCCEEEEEeec-----------------cceeeeeEecCCcc
Confidence 234778875 44 666666679999999999985 5555443 2345555 3334
Q ss_pred CeEEEeecc-ccccccEEEeCCCCEEEEEe-CCCCeEEEE
Q 018474 180 KETTVLHEG-FYFANGIALSKNEDFVVVCE-SWKFRCRRY 217 (355)
Q Consensus 180 ~~~~~~~~~-~~~pngi~~~~dg~~l~v~~-~~~~~i~~~ 217 (355)
|+.++++++ ..+|..|..+++|+ .||+- +.+..++++
T Consensus 254 gt~EvFa~~LPG~PDNIR~~~~G~-fWVal~~~~~~~~~~ 292 (376)
T KOG1520|consen 254 GTSEVFAEGLPGYPDNIRRDSTGH-FWVALHSKRSTLWRL 292 (376)
T ss_pred CchhhHhhcCCCCCcceeECCCCC-EEEEEecccchHHHh
Confidence 444777774 47899999999998 55543 334434443
No 42
>PRK00178 tolB translocation protein TolB; Provisional
Probab=98.64 E-value=4.2e-05 Score=73.48 Aligned_cols=176 Identities=12% Similarity=0.098 Sum_probs=106.4
Q ss_pred ceEEEeeCCCeEE-EEecC--CEEEEEEcCCCeeEEeeccCCCcccCeEECCCCC-EEEEeCCC---cEEEEcC-CC-eE
Q 018474 55 EDVSVVVSKGALY-TATRD--GWVKYFILHNETLVNWKHIDSQSLLGLTTTKDGG-VILCDNEK---GLLKVTE-EG-VE 125 (355)
Q Consensus 55 ~~i~~d~~~g~l~-~~~~~--g~i~~~~~~~g~~~~~~~~~~~p~~gl~~d~~g~-L~v~~~~~---gl~~~~~-~g-~~ 125 (355)
.+..+.|++..|+ +...+ ..|+.++..+|+.+.+....+... ...+.++|+ |++..... .|+.++. ++ .+
T Consensus 202 ~~p~wSpDG~~la~~s~~~~~~~l~~~~l~~g~~~~l~~~~g~~~-~~~~SpDG~~la~~~~~~g~~~Iy~~d~~~~~~~ 280 (430)
T PRK00178 202 LSPRWSPDGKRIAYVSFEQKRPRIFVQNLDTGRREQITNFEGLNG-APAWSPDGSKLAFVLSKDGNPEIYVMDLASRQLS 280 (430)
T ss_pred eeeeECCCCCEEEEEEcCCCCCEEEEEECCCCCEEEccCCCCCcC-CeEECCCCCEEEEEEccCCCceEEEEECCCCCeE
Confidence 5567776676664 44332 469999998887776654334444 677888886 54443222 4888884 56 66
Q ss_pred EEcCCcCCcccEEEccCC-cEEEEeCCCCCCCccccccccccCCCCeEEEEeCCCCeEEEeeccccccccEEEeCCCCEE
Q 018474 126 AIVPDASFTNDVIAASDG-TLYFTVASTKYTPTDFYKDMAEGKPYGQLRKYDPKLKETTVLHEGFYFANGIALSKNEDFV 204 (355)
Q Consensus 126 ~~~~~~~~~~~l~~d~dG-~ly~~d~~~~~~~~~~~~~~~~~~~~g~l~~~dp~~~~~~~~~~~~~~pngi~~~~dg~~l 204 (355)
.+...........+++|| .|+++... .....+|.+|..+++.+.+..........+++|||+.+
T Consensus 281 ~lt~~~~~~~~~~~spDg~~i~f~s~~---------------~g~~~iy~~d~~~g~~~~lt~~~~~~~~~~~Spdg~~i 345 (430)
T PRK00178 281 RVTNHPAIDTEPFWGKDGRTLYFTSDR---------------GGKPQIYKVNVNGGRAERVTFVGNYNARPRLSADGKTL 345 (430)
T ss_pred EcccCCCCcCCeEECCCCCEEEEEECC---------------CCCceEEEEECCCCCEEEeecCCCCccceEECCCCCEE
Confidence 655433334456788998 57766432 11236999998888776554332223346799999999
Q ss_pred EEEeCCC--CeEEEEEeCCCCCcceeEecccCCCCcCceEECCCCCEEE
Q 018474 205 VVCESWK--FRCRRYWLKGDRAGILDAFIENLPGGPDNINLAPDGSFWI 251 (355)
Q Consensus 205 ~v~~~~~--~~i~~~~~~~~~~~~~~~~~~~~~g~p~~i~~d~~G~lwv 251 (355)
+++.... ..|+.+++++.. .+.+.+. .......++++|+..+
T Consensus 346 ~~~~~~~~~~~l~~~dl~tg~---~~~lt~~--~~~~~p~~spdg~~i~ 389 (430)
T PRK00178 346 VMVHRQDGNFHVAAQDLQRGS---VRILTDT--SLDESPSVAPNGTMLI 389 (430)
T ss_pred EEEEccCCceEEEEEECCCCC---EEEccCC--CCCCCceECCCCCEEE
Confidence 8886533 357788875432 2222211 1122346778887443
No 43
>PF01731 Arylesterase: Arylesterase; InterPro: IPR002640 The serum paraoxonases/arylesterases are enzymes that catalyse the hydrolysis of the toxic metabolites of a variety of organophosphorus insecticides. The enzymes hydrolyse a broad spectrum of organophosphate substrates, including paraoxon and a number of aromatic carboxylic acid esters (e.g., phenyl acetate), and hence confer resistance to organophosphate toxicity []. Mammals have 3 distinct paraoxonase types, termed PON1-3 [, ]. In mice and humans, the PON genes are found on the same chromosome in close proximity. PON activity has been found in variety of tissues, with highest levels in liver and serum - the source of serum PON is thought to be the liver. Unlike mammals, fish and avian species lack paraoxonase activity. Human and rabbit PONs appear to have two distinct Ca2+ binding sites, one required for stability and one required for catalytic activity. The Ca2+ dependency of PONs suggests a mechanism of hydrolysis where Ca2+ acts as the electrophillic catalyst, like that proposed for phospholipase A2. The paraoxonase enzymes, PON1 and PON3, are high density lipoprotein (HDL)- associated proteins capable of preventing oxidative modification of low density lipoproteins (LPL) []. Although PON2 has oxidative properties, the enzyme does not associate with HDL. Within a given species, PON1, PON2 and PON3 share ~60% amino acid sequence identity, whereas between mammalian species particular PONs (1,2 or 3) share 79-90% identity at the amino acid level. Human PON1 and PON3 share numerous conserved phosphorylation and N-glycosylation sites; however, it is not known whether the PON proteins are modified at these sites, or whether modification at these sites is required for activity in vivo []. This family consists of arylesterases (Also known as serum paraoxonase) 3.1.1.2 from EC. These enzymes hydrolyse organophosphorus esters such as paraoxon and are found in the liver and blood. They confer resistance to organophosphate toxicity []. Human arylesterase (PON1) P27169 from SWISSPROT is associated with HDL and may protect against LDL oxidation [].; GO: 0004064 arylesterase activity
Probab=98.64 E-value=2.5e-07 Score=66.82 Aligned_cols=84 Identities=31% Similarity=0.457 Sum_probs=62.4
Q ss_pred ccEEEccCCcEEEEeCCCCCCCccccccccccCCCCeEEEEeCCCCeEEEeeccccccccEEEeCCCCEEEEEeCCCCeE
Q 018474 135 NDVIAASDGTLYFTVASTKYTPTDFYKDMAEGKPYGQLRKYDPKLKETTVLHEGFYFANGIALSKNEDFVVVCESWKFRC 214 (355)
Q Consensus 135 ~~l~~d~dG~ly~~d~~~~~~~~~~~~~~~~~~~~g~l~~~dp~~~~~~~~~~~~~~pngi~~~~dg~~l~v~~~~~~~i 214 (355)
|||+.-....+|+|+...-...-....+.+.+.+.+.+..||+ ++.+.+..++..||||+++||++.+|+++...+.|
T Consensus 1 NDIvavG~~sFy~TNDhyf~~~~l~~lE~~l~~~~~~Vvyyd~--~~~~~va~g~~~aNGI~~s~~~k~lyVa~~~~~~I 78 (86)
T PF01731_consen 1 NDIVAVGPDSFYVTNDHYFTDPFLRLLETYLGLPWGNVVYYDG--KEVKVVASGFSFANGIAISPDKKYLYVASSLAHSI 78 (86)
T ss_pred CCEEEECcCcEEEECchhhCcHHHHHHHHHhcCCCceEEEEeC--CEeEEeeccCCCCceEEEcCCCCEEEEEeccCCeE
Confidence 5676666678999886522111111223334455678999997 46778889999999999999999999999999999
Q ss_pred EEEEeC
Q 018474 215 RRYWLK 220 (355)
Q Consensus 215 ~~~~~~ 220 (355)
.+|..+
T Consensus 79 ~vy~~~ 84 (86)
T PF01731_consen 79 HVYKRH 84 (86)
T ss_pred EEEEec
Confidence 999863
No 44
>KOG4659 consensus Uncharacterized conserved protein (Rhs family) [Function unknown]
Probab=98.64 E-value=7.5e-06 Score=83.46 Aligned_cols=198 Identities=15% Similarity=0.225 Sum_probs=117.7
Q ss_pred CCCCCceEEEeeCCCeEEEEecCCEEEEEEcCCCeeEEeeccC----CCcccCeEECC-CCCEEEEeCC-CcEEEEcC-C
Q 018474 50 CVNHPEDVSVVVSKGALYTATRDGWVKYFILHNETLVNWKHID----SQSLLGLTTTK-DGGVILCDNE-KGLLKVTE-E 122 (355)
Q Consensus 50 ~~~~p~~i~~d~~~g~l~~~~~~g~i~~~~~~~g~~~~~~~~~----~~p~~gl~~d~-~g~L~v~~~~-~gl~~~~~-~ 122 (355)
.+..|..++.. .+|.||+|..+= |.|+.+ +|....+.+.+ .+.+ -||+|+ +|.|||.+.. +.++++.. .
T Consensus 363 ~L~aPvala~a-~DGSl~VGDfNy-IRRI~~-dg~v~tIl~L~~t~~sh~Y-y~AvsPvdgtlyvSdp~s~qv~rv~sl~ 438 (1899)
T KOG4659|consen 363 SLFAPVALAYA-PDGSLIVGDFNY-IRRISQ-DGQVSTILTLGLTDTSHSY-YIAVSPVDGTLYVSDPLSKQVWRVSSLE 438 (1899)
T ss_pred eeeceeeEEEc-CCCcEEEccchh-eeeecC-CCceEEEEEecCCCcccee-EEEecCcCceEEecCCCcceEEEeccCC
Confidence 46789999999 789999998754 888888 77665554332 2345 688885 8999999876 46888851 1
Q ss_pred -----C-eEEEcCCc---------------------CCcccEEEccCCcEEEEeCCCC--CCCccccccccccCCCCeEE
Q 018474 123 -----G-VEAIVPDA---------------------SFTNDVIAASDGTLYFTVASTK--YTPTDFYKDMAEGKPYGQLR 173 (355)
Q Consensus 123 -----g-~~~~~~~~---------------------~~~~~l~~d~dG~ly~~d~~~~--~~~~~~~~~~~~~~~~g~l~ 173 (355)
+ .+.++... .+|.++++|.+|.+||+|+..- -........++..+..-
T Consensus 439 ~~d~~~N~evvaG~Ge~Clp~desCGDGalA~dA~L~~PkGIa~dk~g~lYfaD~t~IR~iD~~giIstlig~~~~~--- 515 (1899)
T KOG4659|consen 439 PQDSRNNYEVVAGDGEVCLPADESCGDGALAQDAQLIFPKGIAFDKMGNLYFADGTRIRVIDTTGIISTLIGTTPDQ--- 515 (1899)
T ss_pred ccccccCeeEEeccCcCccccccccCcchhcccceeccCCceeEccCCcEEEecccEEEEeccCceEEEeccCCCCc---
Confidence 2 44443210 7999999999999999987510 00000111111110000
Q ss_pred EEeCCC--CeEEEeeccccccccEEEeCCCCEEEEEeCCCCeEEEEEeCCC------CCccee---------Eeccc-CC
Q 018474 174 KYDPKL--KETTVLHEGFYFANGIALSKNEDFVVVCESWKFRCRRYWLKGD------RAGILD---------AFIEN-LP 235 (355)
Q Consensus 174 ~~dp~~--~~~~~~~~~~~~pngi~~~~dg~~l~v~~~~~~~i~~~~~~~~------~~~~~~---------~~~~~-~~ 235 (355)
+-|.+ +..+...-.+..|..+|++|=.+.||+.++ +-|.+++.... +-.+.. .+++. .-
T Consensus 516 -~~p~~C~~~~kl~~~~leWPT~LaV~Pmdnsl~Vld~--nvvlrit~~~rV~Ii~GrP~hC~~a~~t~~~skla~H~tl 592 (1899)
T KOG4659|consen 516 -HPPRTCAQITKLVDLQLEWPTSLAVDPMDNSLLVLDT--NVVLRITVVHRVRIILGRPTHCDLANATSSASKLADHRTL 592 (1899)
T ss_pred -cCccccccccchhheeeecccceeecCCCCeEEEeec--ceEEEEccCccEEEEcCCccccccCCCchhhhhhhhhhhh
Confidence 00000 000000112457899999997778999985 67777775431 000000 00100 00
Q ss_pred CCcCceEECCCCCEEEEeecCC
Q 018474 236 GGPDNINLAPDGSFWIGLIKMN 257 (355)
Q Consensus 236 g~p~~i~~d~~G~lwv~~~~~~ 257 (355)
-.+..|++..+|-|||+-..++
T Consensus 593 ~~~r~Iavg~~G~lyvaEsD~r 614 (1899)
T KOG4659|consen 593 LIQRDIAVGTDGALYVAESDGR 614 (1899)
T ss_pred hhhhceeecCCceEEEEeccch
Confidence 1356788999999999987753
No 45
>PRK05137 tolB translocation protein TolB; Provisional
Probab=98.61 E-value=5e-05 Score=73.05 Aligned_cols=174 Identities=11% Similarity=0.056 Sum_probs=108.0
Q ss_pred ceEEEeeCCCeEEEEec---CCEEEEEEcCCCeeEEeeccCCCcccCeEECCCCC-EEEEeCC---CcEEEEcC-CC-eE
Q 018474 55 EDVSVVVSKGALYTATR---DGWVKYFILHNETLVNWKHIDSQSLLGLTTTKDGG-VILCDNE---KGLLKVTE-EG-VE 125 (355)
Q Consensus 55 ~~i~~d~~~g~l~~~~~---~g~i~~~~~~~g~~~~~~~~~~~p~~gl~~d~~g~-L~v~~~~---~gl~~~~~-~g-~~ 125 (355)
.+..+.|++..|+..+. +..|+.++..+|+.+.+....+... ..++.++|+ |+++... ..|+.++. ++ .+
T Consensus 205 ~~p~wSpDG~~lay~s~~~g~~~i~~~dl~~g~~~~l~~~~g~~~-~~~~SPDG~~la~~~~~~g~~~Iy~~d~~~~~~~ 283 (435)
T PRK05137 205 LTPRFSPNRQEITYMSYANGRPRVYLLDLETGQRELVGNFPGMTF-APRFSPDGRKVVMSLSQGGNTDIYTMDLRSGTTT 283 (435)
T ss_pred EeeEECCCCCEEEEEEecCCCCEEEEEECCCCcEEEeecCCCccc-CcEECCCCCEEEEEEecCCCceEEEEECCCCceE
Confidence 45667766665554432 4579999998887776654444455 778889996 4444322 24888884 55 66
Q ss_pred EEcCCcCCcccEEEccCCc-EEEEeCCCCCCCccccccccccCCCCeEEEEeCCCCeEEEeeccccccccEEEeCCCCEE
Q 018474 126 AIVPDASFTNDVIAASDGT-LYFTVASTKYTPTDFYKDMAEGKPYGQLRKYDPKLKETTVLHEGFYFANGIALSKNEDFV 204 (355)
Q Consensus 126 ~~~~~~~~~~~l~~d~dG~-ly~~d~~~~~~~~~~~~~~~~~~~~g~l~~~dp~~~~~~~~~~~~~~pngi~~~~dg~~l 204 (355)
.+...........+++||+ |+++... .....+|.+|.++++.+.+......-...+++|||+.+
T Consensus 284 ~Lt~~~~~~~~~~~spDG~~i~f~s~~---------------~g~~~Iy~~d~~g~~~~~lt~~~~~~~~~~~SpdG~~i 348 (435)
T PRK05137 284 RLTDSPAIDTSPSYSPDGSQIVFESDR---------------SGSPQLYVMNADGSNPRRISFGGGRYSTPVWSPRGDLI 348 (435)
T ss_pred EccCCCCccCceeEcCCCCEEEEEECC---------------CCCCeEEEEECCCCCeEEeecCCCcccCeEECCCCCEE
Confidence 6654433445678899994 6665432 11236999998887777665432223456899999988
Q ss_pred EEEeCCC--CeEEEEEeCCCCCcceeEecccCCCCcCceEECCCCCE
Q 018474 205 VVCESWK--FRCRRYWLKGDRAGILDAFIENLPGGPDNINLAPDGSF 249 (355)
Q Consensus 205 ~v~~~~~--~~i~~~~~~~~~~~~~~~~~~~~~g~p~~i~~d~~G~l 249 (355)
+++.... .+|+.+++++.. .+.+.. ........+++||+.
T Consensus 349 a~~~~~~~~~~i~~~d~~~~~---~~~lt~--~~~~~~p~~spDG~~ 390 (435)
T PRK05137 349 AFTKQGGGQFSIGVMKPDGSG---ERILTS--GFLVEGPTWAPNGRV 390 (435)
T ss_pred EEEEcCCCceEEEEEECCCCc---eEeccC--CCCCCCCeECCCCCE
Confidence 8876433 468888875432 222221 112345678888874
No 46
>PRK03629 tolB translocation protein TolB; Provisional
Probab=98.59 E-value=9.8e-05 Score=70.89 Aligned_cols=178 Identities=13% Similarity=0.066 Sum_probs=108.7
Q ss_pred ceEEEeeCCCeEEEEe-c--CCEEEEEEcCCCeeEEeeccCCCcccCeEECCCCC-EEEEeCCC---cEEEEc-CCC-eE
Q 018474 55 EDVSVVVSKGALYTAT-R--DGWVKYFILHNETLVNWKHIDSQSLLGLTTTKDGG-VILCDNEK---GLLKVT-EEG-VE 125 (355)
Q Consensus 55 ~~i~~d~~~g~l~~~~-~--~g~i~~~~~~~g~~~~~~~~~~~p~~gl~~d~~g~-L~v~~~~~---gl~~~~-~~g-~~ 125 (355)
.+..+.|++..+...+ . +..|+.++..+|+.+.+....+... ...+.+||+ |+++.... .|+.++ +++ .+
T Consensus 202 ~~p~wSPDG~~la~~s~~~g~~~i~i~dl~~G~~~~l~~~~~~~~-~~~~SPDG~~La~~~~~~g~~~I~~~d~~tg~~~ 280 (429)
T PRK03629 202 MSPAWSPDGSKLAYVTFESGRSALVIQTLANGAVRQVASFPRHNG-APAFSPDGSKLAFALSKTGSLNLYVMDLASGQIR 280 (429)
T ss_pred eeeEEcCCCCEEEEEEecCCCcEEEEEECCCCCeEEccCCCCCcC-CeEECCCCCEEEEEEcCCCCcEEEEEECCCCCEE
Confidence 4678886666554432 2 3468888888887666544334445 678899997 55543322 488888 466 66
Q ss_pred EEcCCcCCcccEEEccCCc-EEEEeCCCCCCCccccccccccCCCCeEEEEeCCCCeEEEeeccccccccEEEeCCCCEE
Q 018474 126 AIVPDASFTNDVIAASDGT-LYFTVASTKYTPTDFYKDMAEGKPYGQLRKYDPKLKETTVLHEGFYFANGIALSKNEDFV 204 (355)
Q Consensus 126 ~~~~~~~~~~~l~~d~dG~-ly~~d~~~~~~~~~~~~~~~~~~~~g~l~~~dp~~~~~~~~~~~~~~pngi~~~~dg~~l 204 (355)
.+...........++|||+ |+++... ...-.+|.+|.++++.+.+..........+++|||+.+
T Consensus 281 ~lt~~~~~~~~~~wSPDG~~I~f~s~~---------------~g~~~Iy~~d~~~g~~~~lt~~~~~~~~~~~SpDG~~I 345 (429)
T PRK03629 281 QVTDGRSNNTEPTWFPDSQNLAYTSDQ---------------AGRPQVYKVNINGGAPQRITWEGSQNQDADVSSDGKFM 345 (429)
T ss_pred EccCCCCCcCceEECCCCCEEEEEeCC---------------CCCceEEEEECCCCCeEEeecCCCCccCEEECCCCCEE
Confidence 6654434456778999995 6555322 01236899998888776654333334467899999988
Q ss_pred EEEeCCC--CeEEEEEeCCCCCcceeEecccCCCCcCceEECCCCCEEEEe
Q 018474 205 VVCESWK--FRCRRYWLKGDRAGILDAFIENLPGGPDNINLAPDGSFWIGL 253 (355)
Q Consensus 205 ~v~~~~~--~~i~~~~~~~~~~~~~~~~~~~~~g~p~~i~~d~~G~lwv~~ 253 (355)
+++.... ..|+.+++++.. .+.+... ..-....+.+||+..+..
T Consensus 346 a~~~~~~g~~~I~~~dl~~g~---~~~Lt~~--~~~~~p~~SpDG~~i~~~ 391 (429)
T PRK03629 346 VMVSSNGGQQHIAKQDLATGG---VQVLTDT--FLDETPSIAPNGTMVIYS 391 (429)
T ss_pred EEEEccCCCceEEEEECCCCC---eEEeCCC--CCCCCceECCCCCEEEEE
Confidence 7765432 457788875432 2222211 111235678889754444
No 47
>PRK04792 tolB translocation protein TolB; Provisional
Probab=98.57 E-value=0.00015 Score=70.04 Aligned_cols=160 Identities=11% Similarity=0.012 Sum_probs=90.0
Q ss_pred EEEEEEcCCCeeEEeeccCCCcccCeEECCCCC-EEEEeCCC---cEEEEcC-CC-eEEEcCCcCCcccEEEccCCc-EE
Q 018474 74 WVKYFILHNETLVNWKHIDSQSLLGLTTTKDGG-VILCDNEK---GLLKVTE-EG-VEAIVPDASFTNDVIAASDGT-LY 146 (355)
Q Consensus 74 ~i~~~~~~~g~~~~~~~~~~~p~~gl~~d~~g~-L~v~~~~~---gl~~~~~-~g-~~~~~~~~~~~~~l~~d~dG~-ly 146 (355)
.|+..|......+.+........ ...+.+||+ |+++...+ .|+.++. +| .+.+...........++|||+ |+
T Consensus 199 ~l~i~d~dG~~~~~l~~~~~~~~-~p~wSPDG~~La~~s~~~g~~~L~~~dl~tg~~~~lt~~~g~~~~~~wSPDG~~La 277 (448)
T PRK04792 199 QLMIADYDGYNEQMLLRSPEPLM-SPAWSPDGRKLAYVSFENRKAEIFVQDIYTQVREKVTSFPGINGAPRFSPDGKKLA 277 (448)
T ss_pred EEEEEeCCCCCceEeecCCCccc-CceECCCCCEEEEEEecCCCcEEEEEECCCCCeEEecCCCCCcCCeeECCCCCEEE
Confidence 44445553333333333223334 677888986 44333222 4888884 56 555543223344678999994 76
Q ss_pred EEeCCCCCCCccccccccccCCCCeEEEEeCCCCeEEEeeccccccccEEEeCCCCEEEEEeCC--CCeEEEEEeCCCCC
Q 018474 147 FTVASTKYTPTDFYKDMAEGKPYGQLRKYDPKLKETTVLHEGFYFANGIALSKNEDFVVVCESW--KFRCRRYWLKGDRA 224 (355)
Q Consensus 147 ~~d~~~~~~~~~~~~~~~~~~~~g~l~~~dp~~~~~~~~~~~~~~pngi~~~~dg~~l~v~~~~--~~~i~~~~~~~~~~ 224 (355)
++... .....||.+|.++++.+.+..........+++|||+.++++... ...|+++++++...
T Consensus 278 ~~~~~---------------~g~~~Iy~~dl~tg~~~~lt~~~~~~~~p~wSpDG~~I~f~s~~~g~~~Iy~~dl~~g~~ 342 (448)
T PRK04792 278 LVLSK---------------DGQPEIYVVDIATKALTRITRHRAIDTEPSWHPDGKSLIFTSERGGKPQIYRVNLASGKV 342 (448)
T ss_pred EEEeC---------------CCCeEEEEEECCCCCeEECccCCCCccceEECCCCCEEEEEECCCCCceEEEEECCCCCE
Confidence 65322 11236999999888877665443344567899999988776543 34688888764332
Q ss_pred cceeEecccCCCCcCceEECCCCCEEEEe
Q 018474 225 GILDAFIENLPGGPDNINLAPDGSFWIGL 253 (355)
Q Consensus 225 ~~~~~~~~~~~g~p~~i~~d~~G~lwv~~ 253 (355)
+.+. ..........+++||+..+-.
T Consensus 343 ---~~Lt-~~g~~~~~~~~SpDG~~l~~~ 367 (448)
T PRK04792 343 ---SRLT-FEGEQNLGGSITPDGRSMIMV 367 (448)
T ss_pred ---EEEe-cCCCCCcCeeECCCCCEEEEE
Confidence 2121 011112335678888744333
No 48
>PRK03629 tolB translocation protein TolB; Provisional
Probab=98.56 E-value=0.00018 Score=69.02 Aligned_cols=160 Identities=11% Similarity=0.086 Sum_probs=91.0
Q ss_pred EEEEEEcCCCeeEEeeccCCCcccCeEECCCCC-EEEEeCC---CcEEEEc-CCC-eEEEcCCcCCcccEEEccCC-cEE
Q 018474 74 WVKYFILHNETLVNWKHIDSQSLLGLTTTKDGG-VILCDNE---KGLLKVT-EEG-VEAIVPDASFTNDVIAASDG-TLY 146 (355)
Q Consensus 74 ~i~~~~~~~g~~~~~~~~~~~p~~gl~~d~~g~-L~v~~~~---~gl~~~~-~~g-~~~~~~~~~~~~~l~~d~dG-~ly 146 (355)
+|+..|...+..+.+........ ..++.+||+ |.+.... ..++.++ .+| .+.+........+..++||| .|+
T Consensus 180 ~l~~~d~dg~~~~~lt~~~~~~~-~p~wSPDG~~la~~s~~~g~~~i~i~dl~~G~~~~l~~~~~~~~~~~~SPDG~~La 258 (429)
T PRK03629 180 ELRVSDYDGYNQFVVHRSPQPLM-SPAWSPDGSKLAYVTFESGRSALVIQTLANGAVRQVASFPRHNGAPAFSPDGSKLA 258 (429)
T ss_pred eEEEEcCCCCCCEEeecCCCcee-eeEEcCCCCEEEEEEecCCCcEEEEEECCCCCeEEccCCCCCcCCeEECCCCCEEE
Confidence 45555543333333333222344 678889996 3333221 2477777 356 55554333345568999999 476
Q ss_pred EEeCCCCCCCccccccccccCCCCeEEEEeCCCCeEEEeeccccccccEEEeCCCCEEEEEeCC--CCeEEEEEeCCCCC
Q 018474 147 FTVASTKYTPTDFYKDMAEGKPYGQLRKYDPKLKETTVLHEGFYFANGIALSKNEDFVVVCESW--KFRCRRYWLKGDRA 224 (355)
Q Consensus 147 ~~d~~~~~~~~~~~~~~~~~~~~g~l~~~dp~~~~~~~~~~~~~~pngi~~~~dg~~l~v~~~~--~~~i~~~~~~~~~~ 224 (355)
++... .....||.+|.++++.+.+..........+++|||+.++++... ...|+++++++...
T Consensus 259 ~~~~~---------------~g~~~I~~~d~~tg~~~~lt~~~~~~~~~~wSPDG~~I~f~s~~~g~~~Iy~~d~~~g~~ 323 (429)
T PRK03629 259 FALSK---------------TGSLNLYVMDLASGQIRQVTDGRSNNTEPTWFPDSQNLAYTSDQAGRPQVYKVNINGGAP 323 (429)
T ss_pred EEEcC---------------CCCcEEEEEECCCCCEEEccCCCCCcCceEECCCCCEEEEEeCCCCCceEEEEECCCCCe
Confidence 65332 11235999999888877665444445567899999977665433 23688888765322
Q ss_pred cceeEecccCCCCcCceEECCCCCEEEEe
Q 018474 225 GILDAFIENLPGGPDNINLAPDGSFWIGL 253 (355)
Q Consensus 225 ~~~~~~~~~~~g~p~~i~~d~~G~lwv~~ 253 (355)
+.+. ...+......+++||+..+..
T Consensus 324 ---~~lt-~~~~~~~~~~~SpDG~~Ia~~ 348 (429)
T PRK03629 324 ---QRIT-WEGSQNQDADVSSDGKFMVMV 348 (429)
T ss_pred ---EEee-cCCCCccCEEECCCCCEEEEE
Confidence 2221 111223346778888754433
No 49
>PF03022 MRJP: Major royal jelly protein; InterPro: IPR003534 The major royal jelly proteins (MRJPs) comprise 12.5% of the mass, and 82-90% of the protein content [], of honeybee (Apis mellifera) royal jelly. Royal jelly is a substance secreted by the cephalic glands of nurse bees [] and it is used to trigger development of a queen bee from a bee larva. The biological function of the MRJPs is unknown, but they are believed to play a major role in nutrition due to their high essential amino acid content []. Two royal jelly proteins, MRJP3 and MRJP5, contain a tandem repeat that results from a high genetic variablility. This polymorphism may be useful for genotyping individual bees [].; PDB: 3Q6P_B 3Q6K_A 3Q6T_A 2QE8_B.
Probab=98.55 E-value=1.1e-05 Score=72.80 Aligned_cols=180 Identities=19% Similarity=0.241 Sum_probs=104.2
Q ss_pred eEEEeeCCCeEEEEecC-------------CEEEEEEcCCCeeEE-eecc------CCCcccCeEECC-C-----CCEEE
Q 018474 56 DVSVVVSKGALYTATRD-------------GWVKYFILHNETLVN-WKHI------DSQSLLGLTTTK-D-----GGVIL 109 (355)
Q Consensus 56 ~i~~d~~~g~l~~~~~~-------------g~i~~~~~~~g~~~~-~~~~------~~~p~~gl~~d~-~-----g~L~v 109 (355)
.+.+| +.++||+-... -+|+.+|.++++..+ +... ..... .+++|. + +..|+
T Consensus 5 ~v~iD-~~~rLWVlD~G~~~~~~~~~~~~~pKLv~~Dl~t~~li~~~~~p~~~~~~~s~ln-dl~VD~~~~~~~~~~aYI 82 (287)
T PF03022_consen 5 RVQID-ECGRLWVLDSGRPNGLQPPKQVCPPKLVAFDLKTNQLIRRYPFPPDIAPPDSFLN-DLVVDVRDGNCDDGFAYI 82 (287)
T ss_dssp EEEE--TTSEEEEEE-CCHSSSSTTGHTS--EEEEEETTTTCEEEEEE--CCCS-TCGGEE-EEEEECTTTTS-SEEEEE
T ss_pred EEEEc-CCCCEEEEeCCCcCCCCCCCCCCCcEEEEEECCCCcEEEEEECChHHcccccccc-eEEEEccCCCCcceEEEE
Confidence 57888 78899985421 289999999887543 2211 12344 577774 2 46899
Q ss_pred EeCC-CcEEEEc-CCC--eEEEcCCc-------------------CCcccEEEcc---CC-cEEEEeCCCCCCCcccccc
Q 018474 110 CDNE-KGLLKVT-EEG--VEAIVPDA-------------------SFTNDVIAAS---DG-TLYFTVASTKYTPTDFYKD 162 (355)
Q Consensus 110 ~~~~-~gl~~~~-~~g--~~~~~~~~-------------------~~~~~l~~d~---dG-~ly~~d~~~~~~~~~~~~~ 162 (355)
+|.. .||+.++ .+| .+.+.... ..+.+++.++ +| .||+.-.+
T Consensus 83 tD~~~~glIV~dl~~~~s~Rv~~~~~~~~p~~~~~~i~g~~~~~~dg~~gial~~~~~d~r~LYf~~ls----------- 151 (287)
T PF03022_consen 83 TDSGGPGLIVYDLATGKSWRVLHNSFSPDPDAGPFTIGGESFQWPDGIFGIALSPISPDGRWLYFHPLS----------- 151 (287)
T ss_dssp EETTTCEEEEEETTTTEEEEEETCGCTTS-SSEEEEETTEEEEETTSEEEEEE-TTSTTS-EEEEEETT-----------
T ss_pred eCCCcCcEEEEEccCCcEEEEecCCcceeccccceeccCceEecCCCccccccCCCCCCccEEEEEeCC-----------
Confidence 9987 5799999 566 33332211 2234444433 33 46665432
Q ss_pred ccccCCCCeEEEEeC------CC-------CeEEEeeccccccccEEEeCCCCEEEEEeCCCCeEEEEEeCCCC-Cccee
Q 018474 163 MAEGKPYGQLRKYDP------KL-------KETTVLHEGFYFANGIALSKNEDFVVVCESWKFRCRRYWLKGDR-AGILD 228 (355)
Q Consensus 163 ~~~~~~~g~l~~~dp------~~-------~~~~~~~~~~~~pngi~~~~dg~~l~v~~~~~~~i~~~~~~~~~-~~~~~ 228 (355)
...+|+... .. .+++.+........|++++++|. +|+++...+.|.+++.++.- ..+.+
T Consensus 152 ------s~~ly~v~T~~L~~~~~~~~~~~~~~v~~lG~k~~~s~g~~~D~~G~-ly~~~~~~~aI~~w~~~~~~~~~~~~ 224 (287)
T PF03022_consen 152 ------SRKLYRVPTSVLRDPSLSDAQALASQVQDLGDKGSQSDGMAIDPNGN-LYFTDVEQNAIGCWDPDGPYTPENFE 224 (287)
T ss_dssp -------SEEEEEEHHHHCSTT--HHH-HHHT-EEEEE---SECEEEEETTTE-EEEEECCCTEEEEEETTTSB-GCCEE
T ss_pred ------CCcEEEEEHHHhhCccccccccccccceeccccCCCCceEEECCCCc-EEEecCCCCeEEEEeCCCCcCccchh
Confidence 112333321 00 01222222223567999999886 99999999999999987632 22444
Q ss_pred EecccC--CCCcCceEECC--CCCEEEEeec
Q 018474 229 AFIENL--PGGPDNINLAP--DGSFWIGLIK 255 (355)
Q Consensus 229 ~~~~~~--~g~p~~i~~d~--~G~lwv~~~~ 255 (355)
.++... --.|+++.++. +|.+|+-+++
T Consensus 225 ~l~~d~~~l~~pd~~~i~~~~~g~L~v~snr 255 (287)
T PF03022_consen 225 ILAQDPRTLQWPDGLKIDPEGDGYLWVLSNR 255 (287)
T ss_dssp EEEE-CC-GSSEEEEEE-T--TS-EEEEE-S
T ss_pred eeEEcCceeeccceeeeccccCceEEEEECc
Confidence 444322 24799999999 9999999876
No 50
>KOG0291 consensus WD40-repeat-containing subunit of the 18S rRNA processing complex [RNA processing and modification]
Probab=98.55 E-value=8.4e-05 Score=72.32 Aligned_cols=187 Identities=14% Similarity=0.197 Sum_probs=128.3
Q ss_pred CCCCCCceEEEeeCCCeEEEEecCCEEEEEEcCCCe-eEEeeccCCCcccCeEECCCCCEEEEeCCCcEEEEc--CCC--
Q 018474 49 GCVNHPEDVSVVVSKGALYTATRDGWVKYFILHNET-LVNWKHIDSQSLLGLTTTKDGGVILCDNEKGLLKVT--EEG-- 123 (355)
Q Consensus 49 ~~~~~p~~i~~d~~~g~l~~~~~~g~i~~~~~~~g~-~~~~~~~~~~p~~gl~~d~~g~L~v~~~~~gl~~~~--~~g-- 123 (355)
|....-.+++..|++..+..|..||+|..+|...|- +..|........ ++.+...|+..++.+-+|-+|.. +..
T Consensus 348 gH~~~i~~l~YSpDgq~iaTG~eDgKVKvWn~~SgfC~vTFteHts~Vt-~v~f~~~g~~llssSLDGtVRAwDlkRYrN 426 (893)
T KOG0291|consen 348 GHSDRITSLAYSPDGQLIATGAEDGKVKVWNTQSGFCFVTFTEHTSGVT-AVQFTARGNVLLSSSLDGTVRAWDLKRYRN 426 (893)
T ss_pred ccccceeeEEECCCCcEEEeccCCCcEEEEeccCceEEEEeccCCCceE-EEEEEecCCEEEEeecCCeEEeeeecccce
Confidence 556777889999777777788889999999986664 334443334455 88898999988887777766554 332
Q ss_pred eEEEcCCc-CCcccEEEccCCcEEEEeCCCCCCCccccccccccCCCCeEEEEeCCCCeEEEeecccccc-ccEEEeCCC
Q 018474 124 VEAIVPDA-SFTNDVIAASDGTLYFTVASTKYTPTDFYKDMAEGKPYGQLRKYDPKLKETTVLHEGFYFA-NGIALSKNE 201 (355)
Q Consensus 124 ~~~~~~~~-~~~~~l~~d~dG~ly~~d~~~~~~~~~~~~~~~~~~~~g~l~~~dp~~~~~~~~~~~~~~p-ngi~~~~dg 201 (355)
.+++..+. .....+++|+.|.|.++.+.. .=.++.|+-+||+...+..+...| .++++++++
T Consensus 427 fRTft~P~p~QfscvavD~sGelV~AG~~d----------------~F~IfvWS~qTGqllDiLsGHEgPVs~l~f~~~~ 490 (893)
T KOG0291|consen 427 FRTFTSPEPIQFSCVAVDPSGELVCAGAQD----------------SFEIFVWSVQTGQLLDILSGHEGPVSGLSFSPDG 490 (893)
T ss_pred eeeecCCCceeeeEEEEcCCCCEEEeeccc----------------eEEEEEEEeecCeeeehhcCCCCcceeeEEcccc
Confidence 66665442 566788999999888775431 115888898899887666666555 578999999
Q ss_pred CEEEEEeCCCCeEEEEEeCCCCCcceeEecccCCCCcCceEECCCCC-EEEEeecC
Q 018474 202 DFVVVCESWKFRCRRYWLKGDRAGILDAFIENLPGGPDNINLAPDGS-FWIGLIKM 256 (355)
Q Consensus 202 ~~l~v~~~~~~~i~~~~~~~~~~~~~~~~~~~~~g~p~~i~~d~~G~-lwv~~~~~ 256 (355)
. ++++.++.+.|..|++=.. -++.+++. .....-++.+.++|+ +=|++..+
T Consensus 491 ~-~LaS~SWDkTVRiW~if~s-~~~vEtl~--i~sdvl~vsfrPdG~elaVaTldg 542 (893)
T KOG0291|consen 491 S-LLASGSWDKTVRIWDIFSS-SGTVETLE--IRSDVLAVSFRPDGKELAVATLDG 542 (893)
T ss_pred C-eEEeccccceEEEEEeecc-CceeeeEe--eccceeEEEEcCCCCeEEEEEecc
Confidence 8 6777788889998887321 12333331 111234566777784 77777663
No 51
>TIGR02800 propeller_TolB tol-pal system beta propeller repeat protein TolB. The Tol-PAL system is required for bacterial outer membrane integrity. E. coli TolB is involved in the tonB-independent uptake of group A colicins (colicins A, E1, E2, E3 and K), and is necessary for the colicins to reach their respective targets after initial binding to the bacteria. It is also involved in uptake of filamentous DNA. Study of its structure suggest that the TolB protein might be involved in the recycling of peptidoglycan or in its covalent linking with lipoproteins. The Tol-Pal system is also implicated in pathogenesis of E. coli, Haemophilus ducreyi, Salmonella enterica and Vibrio cholerae, but the mechanism(s) is unclear.
Probab=98.53 E-value=0.00013 Score=69.73 Aligned_cols=178 Identities=12% Similarity=0.059 Sum_probs=106.4
Q ss_pred eEEEeeCCCeEEEEecC---CEEEEEEcCCCeeEEeeccCCCcccCeEECCCCC-EEEEeCCC---cEEEEcC-CC-eEE
Q 018474 56 DVSVVVSKGALYTATRD---GWVKYFILHNETLVNWKHIDSQSLLGLTTTKDGG-VILCDNEK---GLLKVTE-EG-VEA 126 (355)
Q Consensus 56 ~i~~d~~~g~l~~~~~~---g~i~~~~~~~g~~~~~~~~~~~p~~gl~~d~~g~-L~v~~~~~---gl~~~~~-~g-~~~ 126 (355)
+..+.+++..++..... ..|+.++..+++.+.+....+... ..++.++|+ |+++.... .|+.++. ++ .+.
T Consensus 194 ~p~~Spdg~~la~~~~~~~~~~i~v~d~~~g~~~~~~~~~~~~~-~~~~spDg~~l~~~~~~~~~~~i~~~d~~~~~~~~ 272 (417)
T TIGR02800 194 SPAWSPDGQKLAYVSFESGKPEIYVQDLATGQREKVASFPGMNG-APAFSPDGSKLAVSLSKDGNPDIYVMDLDGKQLTR 272 (417)
T ss_pred cccCCCCCCEEEEEEcCCCCcEEEEEECCCCCEEEeecCCCCcc-ceEECCCCCEEEEEECCCCCccEEEEECCCCCEEE
Confidence 34566566666655432 478999988887666554444455 788888886 65554322 4888884 55 555
Q ss_pred EcCCcCCcccEEEccCCc-EEEEeCCCCCCCccccccccccCCCCeEEEEeCCCCeEEEeeccccccccEEEeCCCCEEE
Q 018474 127 IVPDASFTNDVIAASDGT-LYFTVASTKYTPTDFYKDMAEGKPYGQLRKYDPKLKETTVLHEGFYFANGIALSKNEDFVV 205 (355)
Q Consensus 127 ~~~~~~~~~~l~~d~dG~-ly~~d~~~~~~~~~~~~~~~~~~~~g~l~~~dp~~~~~~~~~~~~~~pngi~~~~dg~~l~ 205 (355)
+...........+++||+ |+++... .....+|.+|.++++.+.+..........+++|||+.++
T Consensus 273 l~~~~~~~~~~~~s~dg~~l~~~s~~---------------~g~~~iy~~d~~~~~~~~l~~~~~~~~~~~~spdg~~i~ 337 (417)
T TIGR02800 273 LTNGPGIDTEPSWSPDGKSIAFTSDR---------------GGSPQIYMMDADGGEVRRLTFRGGYNASPSWSPDGDLIA 337 (417)
T ss_pred CCCCCCCCCCEEECCCCCEEEEEECC---------------CCCceEEEEECCCCCEEEeecCCCCccCeEECCCCCEEE
Confidence 543322233557788884 6555322 112369999988887766554444455678999999888
Q ss_pred EEeCCC--CeEEEEEeCCCCCcceeEecccCCCCcCceEECCCCC-EEEEee
Q 018474 206 VCESWK--FRCRRYWLKGDRAGILDAFIENLPGGPDNINLAPDGS-FWIGLI 254 (355)
Q Consensus 206 v~~~~~--~~i~~~~~~~~~~~~~~~~~~~~~g~p~~i~~d~~G~-lwv~~~ 254 (355)
++.... .+|+.+++++. ..+.+.+ ........+.++|+ ++++..
T Consensus 338 ~~~~~~~~~~i~~~d~~~~---~~~~l~~--~~~~~~p~~spdg~~l~~~~~ 384 (417)
T TIGR02800 338 FVHREGGGFNIAVMDLDGG---GERVLTD--TGLDESPSFAPNGRMILYATT 384 (417)
T ss_pred EEEccCCceEEEEEeCCCC---CeEEccC--CCCCCCceECCCCCEEEEEEe
Confidence 876543 36888887542 2222221 11123345677776 444443
No 52
>PRK04922 tolB translocation protein TolB; Provisional
Probab=98.51 E-value=0.00019 Score=68.98 Aligned_cols=158 Identities=13% Similarity=0.067 Sum_probs=90.0
Q ss_pred EEEEEEcCCCeeEEeeccCCCcccCeEECCCCC-EEEEeCCC---cEEEEc-CCC-eEEEcCCcCCcccEEEccCC-cEE
Q 018474 74 WVKYFILHNETLVNWKHIDSQSLLGLTTTKDGG-VILCDNEK---GLLKVT-EEG-VEAIVPDASFTNDVIAASDG-TLY 146 (355)
Q Consensus 74 ~i~~~~~~~g~~~~~~~~~~~p~~gl~~d~~g~-L~v~~~~~---gl~~~~-~~g-~~~~~~~~~~~~~l~~d~dG-~ly 146 (355)
.|+.+|...+..+.+........ +.++.++|+ |+++.... .++.++ .+| .+.+...........+++|| .|+
T Consensus 185 ~l~i~D~~g~~~~~lt~~~~~v~-~p~wSpDg~~la~~s~~~~~~~l~~~dl~~g~~~~l~~~~g~~~~~~~SpDG~~l~ 263 (433)
T PRK04922 185 ALQVADSDGYNPQTILRSAEPIL-SPAWSPDGKKLAYVSFERGRSAIYVQDLATGQRELVASFRGINGAPSFSPDGRRLA 263 (433)
T ss_pred EEEEECCCCCCceEeecCCCccc-cccCCCCCCEEEEEecCCCCcEEEEEECCCCCEEEeccCCCCccCceECCCCCEEE
Confidence 35555553333333333222344 677888886 54444322 388888 456 55554332333467899999 466
Q ss_pred EEeCCCCCCCccccccccccCCCCeEEEEeCCCCeEEEeeccccccccEEEeCCCCEEEEEeCCC--CeEEEEEeCCCCC
Q 018474 147 FTVASTKYTPTDFYKDMAEGKPYGQLRKYDPKLKETTVLHEGFYFANGIALSKNEDFVVVCESWK--FRCRRYWLKGDRA 224 (355)
Q Consensus 147 ~~d~~~~~~~~~~~~~~~~~~~~g~l~~~dp~~~~~~~~~~~~~~pngi~~~~dg~~l~v~~~~~--~~i~~~~~~~~~~ 224 (355)
++.+. .....||.+|.++++.+.+..........+++|||+.++++.... ..|+.+++++...
T Consensus 264 ~~~s~---------------~g~~~Iy~~d~~~g~~~~lt~~~~~~~~~~~spDG~~l~f~sd~~g~~~iy~~dl~~g~~ 328 (433)
T PRK04922 264 LTLSR---------------DGNPEIYVMDLGSRQLTRLTNHFGIDTEPTWAPDGKSIYFTSDRGGRPQIYRVAASGGSA 328 (433)
T ss_pred EEEeC---------------CCCceEEEEECCCCCeEECccCCCCccceEECCCCCEEEEEECCCCCceEEEEECCCCCe
Confidence 65322 112369999998888776654433334578999999887765432 3588888754322
Q ss_pred cceeEecccCCCCcCceEECCCCCEEE
Q 018474 225 GILDAFIENLPGGPDNINLAPDGSFWI 251 (355)
Q Consensus 225 ~~~~~~~~~~~g~p~~i~~d~~G~lwv 251 (355)
+.+. ..........++++|+..+
T Consensus 329 ---~~lt-~~g~~~~~~~~SpDG~~Ia 351 (433)
T PRK04922 329 ---ERLT-FQGNYNARASVSPDGKKIA 351 (433)
T ss_pred ---EEee-cCCCCccCEEECCCCCEEE
Confidence 2121 1112233567888887433
No 53
>PF02239 Cytochrom_D1: Cytochrome D1 heme domain; PDB: 1NNO_B 1HZU_A 1N15_B 1N50_A 1GJQ_A 1BL9_B 1NIR_B 1N90_B 1HZV_A 1AOQ_A ....
Probab=98.51 E-value=5.8e-05 Score=70.72 Aligned_cols=160 Identities=16% Similarity=0.156 Sum_probs=99.1
Q ss_pred eEecCCCCCCCceEEEeeCCCeEEEEecCCEEEEEEcCCCeeEEeeccCCCcccCeEECCCCC-EEEEeCC-CcEEEEc-
Q 018474 44 TKLGEGCVNHPEDVSVVVSKGALYTATRDGWVKYFILHNETLVNWKHIDSQSLLGLTTTKDGG-VILCDNE-KGLLKVT- 120 (355)
Q Consensus 44 ~~~~~~~~~~p~~i~~d~~~g~l~~~~~~g~i~~~~~~~g~~~~~~~~~~~p~~gl~~d~~g~-L~v~~~~-~gl~~~~- 120 (355)
.+++.+. .-+..+++.++++.+|+++.+|.|..+|..+++...-...+..|. ++++.++|+ +|++... +.+..+|
T Consensus 30 ~~i~~~~-~~h~~~~~s~Dgr~~yv~~rdg~vsviD~~~~~~v~~i~~G~~~~-~i~~s~DG~~~~v~n~~~~~v~v~D~ 107 (369)
T PF02239_consen 30 ARIPTGG-APHAGLKFSPDGRYLYVANRDGTVSVIDLATGKVVATIKVGGNPR-GIAVSPDGKYVYVANYEPGTVSVIDA 107 (369)
T ss_dssp EEEE-ST-TEEEEEE-TT-SSEEEEEETTSEEEEEETTSSSEEEEEE-SSEEE-EEEE--TTTEEEEEEEETTEEEEEET
T ss_pred EEEcCCC-CceeEEEecCCCCEEEEEcCCCeEEEEECCcccEEEEEecCCCcc-eEEEcCCCCEEEEEecCCCceeEecc
Confidence 4555542 224556677667889999999999999998888665556677899 999999997 6667654 4566777
Q ss_pred CCC--eEEEcCCc-------CCcccEEEccCCcEEEEeCCCCCCCccccccccccCCCCeEEEEeCCCCe--EEEeeccc
Q 018474 121 EEG--VEAIVPDA-------SFTNDVIAASDGTLYFTVASTKYTPTDFYKDMAEGKPYGQLRKYDPKLKE--TTVLHEGF 189 (355)
Q Consensus 121 ~~g--~~~~~~~~-------~~~~~l~~d~dG~ly~~d~~~~~~~~~~~~~~~~~~~~g~l~~~dp~~~~--~~~~~~~~ 189 (355)
.+. ++.+.... ..+.++..++.+..|+.+.. ..+.++..|....+ ........
T Consensus 108 ~tle~v~~I~~~~~~~~~~~~Rv~aIv~s~~~~~fVv~lk----------------d~~~I~vVdy~d~~~~~~~~i~~g 171 (369)
T PF02239_consen 108 ETLEPVKTIPTGGMPVDGPESRVAAIVASPGRPEFVVNLK----------------DTGEIWVVDYSDPKNLKVTTIKVG 171 (369)
T ss_dssp TT--EEEEEE--EE-TTTS---EEEEEE-SSSSEEEEEET----------------TTTEEEEEETTTSSCEEEEEEE--
T ss_pred ccccceeecccccccccccCCCceeEEecCCCCEEEEEEc----------------cCCeEEEEEeccccccceeeeccc
Confidence 444 55554321 24456666666665544311 14577777643322 12223344
Q ss_pred cccccEEEeCCCCEEEEEeCCCCeEEEEEeCC
Q 018474 190 YFANGIALSKNEDFVVVCESWKFRCRRYWLKG 221 (355)
Q Consensus 190 ~~pngi~~~~dg~~l~v~~~~~~~i~~~~~~~ 221 (355)
.+|.+..++|++++++++....+.|..++.+.
T Consensus 172 ~~~~D~~~dpdgry~~va~~~sn~i~viD~~~ 203 (369)
T PF02239_consen 172 RFPHDGGFDPDGRYFLVAANGSNKIAVIDTKT 203 (369)
T ss_dssp TTEEEEEE-TTSSEEEEEEGGGTEEEEEETTT
T ss_pred ccccccccCcccceeeecccccceeEEEeecc
Confidence 67889999999999999887888999998643
No 54
>PRK04043 tolB translocation protein TolB; Provisional
Probab=98.50 E-value=0.00021 Score=68.17 Aligned_cols=202 Identities=10% Similarity=0.001 Sum_probs=122.3
Q ss_pred eEEEeeCCCe-EEEEec---CCEEEEEEcCCCeeEEeeccCCCcccCeEECCCCC-EEEEeCC---CcEEEEc-CCC-eE
Q 018474 56 DVSVVVSKGA-LYTATR---DGWVKYFILHNETLVNWKHIDSQSLLGLTTTKDGG-VILCDNE---KGLLKVT-EEG-VE 125 (355)
Q Consensus 56 ~i~~d~~~g~-l~~~~~---~g~i~~~~~~~g~~~~~~~~~~~p~~gl~~d~~g~-L~v~~~~---~gl~~~~-~~g-~~ 125 (355)
...+.|+++. +|..+. +..|+.+|..+|+.+.+....+... ...+.+||+ |.+.... ..|+.++ .++ .+
T Consensus 192 ~p~wSpDG~~~i~y~s~~~~~~~Iyv~dl~tg~~~~lt~~~g~~~-~~~~SPDG~~la~~~~~~g~~~Iy~~dl~~g~~~ 270 (419)
T PRK04043 192 FPKWANKEQTAFYYTSYGERKPTLYKYNLYTGKKEKIASSQGMLV-VSDVSKDGSKLLLTMAPKGQPDIYLYDTNTKTLT 270 (419)
T ss_pred eEEECCCCCcEEEEEEccCCCCEEEEEECCCCcEEEEecCCCcEE-eeEECCCCCEEEEEEccCCCcEEEEEECCCCcEE
Confidence 4567766653 665433 3579999998898877765433333 456778885 5444322 3588888 456 66
Q ss_pred EEcCCcCCcccEEEccCC-cEEEEeCCCCCCCccccccccccCCCCeEEEEeCCCCeEEEeeccccccccEEEeCCCCEE
Q 018474 126 AIVPDASFTNDVIAASDG-TLYFTVASTKYTPTDFYKDMAEGKPYGQLRKYDPKLKETTVLHEGFYFANGIALSKNEDFV 204 (355)
Q Consensus 126 ~~~~~~~~~~~l~~d~dG-~ly~~d~~~~~~~~~~~~~~~~~~~~g~l~~~dp~~~~~~~~~~~~~~pngi~~~~dg~~l 204 (355)
.+......-....++||| .|+|+... .....||++|.++++.+.+..... .+ ..++|||+.+
T Consensus 271 ~LT~~~~~d~~p~~SPDG~~I~F~Sdr---------------~g~~~Iy~~dl~~g~~~rlt~~g~-~~-~~~SPDG~~I 333 (419)
T PRK04043 271 QITNYPGIDVNGNFVEDDKRIVFVSDR---------------LGYPNIFMKKLNSGSVEQVVFHGK-NN-SSVSTYKNYI 333 (419)
T ss_pred EcccCCCccCccEECCCCCEEEEEECC---------------CCCceEEEEECCCCCeEeCccCCC-cC-ceECCCCCEE
Confidence 665432212234689999 68887543 112379999998888865543221 12 4899999988
Q ss_pred EEEeCCC--------CeEEEEEeCCCCCcceeEecccCCCCcCceEECCCCC-EEEEeecCCchhhHhhhcchhHHHHHH
Q 018474 205 VVCESWK--------FRCRRYWLKGDRAGILDAFIENLPGGPDNINLAPDGS-FWIGLIKMNQTGVRAIQKCREKWELLD 275 (355)
Q Consensus 205 ~v~~~~~--------~~i~~~~~~~~~~~~~~~~~~~~~g~p~~i~~d~~G~-lwv~~~~~~~~~~~~~~~~~~~~~~~~ 275 (355)
.++.... ..|+.+++++.. .+.+... +.-....+.+||+ +.+++..
T Consensus 334 a~~~~~~~~~~~~~~~~I~v~d~~~g~---~~~LT~~--~~~~~p~~SPDG~~I~f~~~~-------------------- 388 (419)
T PRK04043 334 VYSSRETNNEFGKNTFNLYLISTNSDY---IRRLTAN--GVNQFPRFSSDGGSIMFIKYL-------------------- 388 (419)
T ss_pred EEEEcCCCcccCCCCcEEEEEECCCCC---eEECCCC--CCcCCeEECCCCCEEEEEEcc--------------------
Confidence 7776432 478888876532 2222211 1112356788886 5454433
Q ss_pred hccchhhcccCCCCCCceEEEEEeCCCCeEEEEEECCCCC
Q 018474 276 AYPGLISLLLPMGSDAGARVVKVDGNDGKIIRDFNDPDAT 315 (355)
Q Consensus 276 ~~~~~~~~~~~~~~~~~~~v~~~~~~~g~~~~~~~~~~g~ 315 (355)
.....+..++. +|.....+....|.
T Consensus 389 --------------~~~~~L~~~~l-~g~~~~~l~~~~g~ 413 (419)
T PRK04043 389 --------------GNQSALGIIRL-NYNKSFLFPLKVGK 413 (419)
T ss_pred --------------CCcEEEEEEec-CCCeeEEeecCCCc
Confidence 12246888888 88776666655553
No 55
>PRK01742 tolB translocation protein TolB; Provisional
Probab=98.46 E-value=0.00015 Score=69.56 Aligned_cols=176 Identities=11% Similarity=0.087 Sum_probs=106.8
Q ss_pred CceEEEeeCCCeEEEEec---CCEEEEEEcCCCeeEEeeccCCCcccCeEECCCCC-EEEEeCCCc---EEEEcC-CC-e
Q 018474 54 PEDVSVVVSKGALYTATR---DGWVKYFILHNETLVNWKHIDSQSLLGLTTTKDGG-VILCDNEKG---LLKVTE-EG-V 124 (355)
Q Consensus 54 p~~i~~d~~~g~l~~~~~---~g~i~~~~~~~g~~~~~~~~~~~p~~gl~~d~~g~-L~v~~~~~g---l~~~~~-~g-~ 124 (355)
-.++.+.|++..+...+. +..|+.+|..+++.+.+....+... ..++.+||+ |.++....| |+.++. ++ .
T Consensus 206 v~~p~wSPDG~~la~~s~~~~~~~i~i~dl~tg~~~~l~~~~g~~~-~~~wSPDG~~La~~~~~~g~~~Iy~~d~~~~~~ 284 (429)
T PRK01742 206 LMSPAWSPDGSKLAYVSFENKKSQLVVHDLRSGARKVVASFRGHNG-APAFSPDGSRLAFASSKDGVLNIYVMGANGGTP 284 (429)
T ss_pred cccceEcCCCCEEEEEEecCCCcEEEEEeCCCCceEEEecCCCccC-ceeECCCCCEEEEEEecCCcEEEEEEECCCCCe
Confidence 356778876766655443 2469999988887665544334445 678899997 555433333 777774 55 6
Q ss_pred EEEcCCcCCcccEEEccCCc-EEEEeCCCCCCCccccccccccCCCCeEEEEeCCCCeEEEeeccccccccEEEeCCCCE
Q 018474 125 EAIVPDASFTNDVIAASDGT-LYFTVASTKYTPTDFYKDMAEGKPYGQLRKYDPKLKETTVLHEGFYFANGIALSKNEDF 203 (355)
Q Consensus 125 ~~~~~~~~~~~~l~~d~dG~-ly~~d~~~~~~~~~~~~~~~~~~~~g~l~~~dp~~~~~~~~~~~~~~pngi~~~~dg~~ 203 (355)
+.+........+..+++||+ |+++... ...-.+|.++..++..+.+. ... ...+++|||+.
T Consensus 285 ~~lt~~~~~~~~~~wSpDG~~i~f~s~~---------------~g~~~I~~~~~~~~~~~~l~-~~~--~~~~~SpDG~~ 346 (429)
T PRK01742 285 SQLTSGAGNNTEPSWSPDGQSILFTSDR---------------SGSPQVYRMSASGGGASLVG-GRG--YSAQISADGKT 346 (429)
T ss_pred EeeccCCCCcCCEEECCCCCEEEEEECC---------------CCCceEEEEECCCCCeEEec-CCC--CCccCCCCCCE
Confidence 66554434466789999995 6665322 01236888887766555442 211 34679999998
Q ss_pred EEEEeCCCCeEEEEEeCCCCCcceeEecccCCCCcCceEECCCCCEEEEeec
Q 018474 204 VVVCESWKFRCRRYWLKGDRAGILDAFIENLPGGPDNINLAPDGSFWIGLIK 255 (355)
Q Consensus 204 l~v~~~~~~~i~~~~~~~~~~~~~~~~~~~~~g~p~~i~~d~~G~lwv~~~~ 255 (355)
++++.. .+++++++.+.. .+.+.... ......++++|++.+....
T Consensus 347 ia~~~~--~~i~~~Dl~~g~---~~~lt~~~--~~~~~~~sPdG~~i~~~s~ 391 (429)
T PRK01742 347 LVMING--DNVVKQDLTSGS---TEVLSSTF--LDESPSISPNGIMIIYSST 391 (429)
T ss_pred EEEEcC--CCEEEEECCCCC---eEEecCCC--CCCCceECCCCCEEEEEEc
Confidence 877654 578888875432 22221111 1234567899986665543
No 56
>TIGR03606 non_repeat_PQQ dehydrogenase, PQQ-dependent, s-GDH family. PQQ, or pyrroloquinoline-quinone, serves as a cofactor for a number of sugar and alcohol dehydrogenases in a limited number of bacterial species. Most characterized PQQ-dependent enzymes have multiple repeats of a sequence region described by pfam01011 (PQQ enzyme repeat), but this protein family in unusual in lacking that repeat. Below the noise cutoff are related proteins mostly from species that lack PQQ biosynthesis.
Probab=98.45 E-value=2.8e-05 Score=73.87 Aligned_cols=116 Identities=16% Similarity=0.290 Sum_probs=78.1
Q ss_pred eEEEcCCcCCcccEEEccCCcEEEEeCCCCCCCccccccccccCCCCeEEEEeCCCCeEEEee-------c-cccccccE
Q 018474 124 VEAIVPDASFTNDVIAASDGTLYFTVASTKYTPTDFYKDMAEGKPYGQLRKYDPKLKETTVLH-------E-GFYFANGI 195 (355)
Q Consensus 124 ~~~~~~~~~~~~~l~~d~dG~ly~~d~~~~~~~~~~~~~~~~~~~~g~l~~~dp~~~~~~~~~-------~-~~~~pngi 195 (355)
+++++..+..|.+|++.+||++||+... .|+|+++++.++..+.+. . +....-||
T Consensus 22 ~~~va~GL~~Pw~maflPDG~llVtER~-----------------~G~I~~v~~~~~~~~~~~~l~~v~~~~ge~GLlgl 84 (454)
T TIGR03606 22 KKVLLSGLNKPWALLWGPDNQLWVTERA-----------------TGKILRVNPETGEVKVVFTLPEIVNDAQHNGLLGL 84 (454)
T ss_pred EEEEECCCCCceEEEEcCCCeEEEEEec-----------------CCEEEEEeCCCCceeeeecCCceeccCCCCceeeE
Confidence 4556666689999999999999998643 468888887655433221 1 23456789
Q ss_pred EEeCCC------CEEEEEeCC---------CCeEEEEEeCC--CCCcceeEecccCCCC----cCceEECCCCCEEEEee
Q 018474 196 ALSKNE------DFVVVCESW---------KFRCRRYWLKG--DRAGILDAFIENLPGG----PDNINLAPDGSFWIGLI 254 (355)
Q Consensus 196 ~~~~dg------~~l~v~~~~---------~~~i~~~~~~~--~~~~~~~~~~~~~~g~----p~~i~~d~~G~lwv~~~ 254 (355)
+++||- +++|++.+. ..+|.|+.++. ......+.+...+|.. -..|++++||.|||++.
T Consensus 85 al~PdF~~~~~n~~lYvsyt~~~~~~~~~~~~~I~R~~l~~~~~~l~~~~~Il~~lP~~~~H~GgrI~FgPDG~LYVs~G 164 (454)
T TIGR03606 85 ALHPDFMQEKGNPYVYISYTYKNGDKELPNHTKIVRYTYDKSTQTLEKPVDLLAGLPAGNDHNGGRLVFGPDGKIYYTIG 164 (454)
T ss_pred EECCCccccCCCcEEEEEEeccCCCCCccCCcEEEEEEecCCCCccccceEEEecCCCCCCcCCceEEECCCCcEEEEEC
Confidence 999873 478998632 46899998753 2233333444344321 23478999999999997
Q ss_pred cC
Q 018474 255 KM 256 (355)
Q Consensus 255 ~~ 256 (355)
..
T Consensus 165 D~ 166 (454)
T TIGR03606 165 EQ 166 (454)
T ss_pred CC
Confidence 75
No 57
>PRK11138 outer membrane biogenesis protein BamB; Provisional
Probab=98.45 E-value=0.00016 Score=68.68 Aligned_cols=64 Identities=20% Similarity=0.299 Sum_probs=41.8
Q ss_pred EEEeeCCCeEEEEecCCEEEEEEcCCCeeEEeeccCCCcccCeEECCCCCEEEEeCCCcEEEEcC-CC
Q 018474 57 VSVVVSKGALYTATRDGWVKYFILHNETLVNWKHIDSQSLLGLTTTKDGGVILCDNEKGLLKVTE-EG 123 (355)
Q Consensus 57 i~~d~~~g~l~~~~~~g~i~~~~~~~g~~~~~~~~~~~p~~gl~~d~~g~L~v~~~~~gl~~~~~-~g 123 (355)
++.+ ++.+|+++.+|.++.+|.++|+..--....+.+.....+ .++.+|+++..+.++.+|. +|
T Consensus 116 ~~v~--~~~v~v~~~~g~l~ald~~tG~~~W~~~~~~~~~ssP~v-~~~~v~v~~~~g~l~ald~~tG 180 (394)
T PRK11138 116 VTVA--GGKVYIGSEKGQVYALNAEDGEVAWQTKVAGEALSRPVV-SDGLVLVHTSNGMLQALNESDG 180 (394)
T ss_pred cEEE--CCEEEEEcCCCEEEEEECCCCCCcccccCCCceecCCEE-ECCEEEEECCCCEEEEEEccCC
Confidence 4444 678999988999999999899753222222222202223 2678998876666899994 77
No 58
>TIGR03606 non_repeat_PQQ dehydrogenase, PQQ-dependent, s-GDH family. PQQ, or pyrroloquinoline-quinone, serves as a cofactor for a number of sugar and alcohol dehydrogenases in a limited number of bacterial species. Most characterized PQQ-dependent enzymes have multiple repeats of a sequence region described by pfam01011 (PQQ enzyme repeat), but this protein family in unusual in lacking that repeat. Below the noise cutoff are related proteins mostly from species that lack PQQ biosynthesis.
Probab=98.44 E-value=3.3e-05 Score=73.42 Aligned_cols=172 Identities=13% Similarity=0.129 Sum_probs=107.9
Q ss_pred ceEecCCCCCCCceEEEeeCCCeEEEEec-CCEEEEEEcCCCeeEEee-------c-cCCCcccCeEECCC-------CC
Q 018474 43 LTKLGEGCVNHPEDVSVVVSKGALYTATR-DGWVKYFILHNETLVNWK-------H-IDSQSLLGLTTTKD-------GG 106 (355)
Q Consensus 43 ~~~~~~~~~~~p~~i~~d~~~g~l~~~~~-~g~i~~~~~~~g~~~~~~-------~-~~~~p~~gl~~d~~-------g~ 106 (355)
.+.+..+ +..|.+|++. .+|.+|++.. .|+|+++++.++..+.+. . ..+... +|+++++ +.
T Consensus 22 ~~~va~G-L~~Pw~mafl-PDG~llVtER~~G~I~~v~~~~~~~~~~~~l~~v~~~~ge~GLl-glal~PdF~~~~~n~~ 98 (454)
T TIGR03606 22 KKVLLSG-LNKPWALLWG-PDNQLWVTERATGKILRVNPETGEVKVVFTLPEIVNDAQHNGLL-GLALHPDFMQEKGNPY 98 (454)
T ss_pred EEEEECC-CCCceEEEEc-CCCeEEEEEecCCEEEEEeCCCCceeeeecCCceeccCCCCcee-eEEECCCccccCCCcE
Confidence 3556665 8999999999 5778999887 599999987655433221 1 123467 8888754 36
Q ss_pred EEEEeC----------CCcEEEEc--CC-C----eEEEc-CCc----CCcccEEEccCCcEEEEeCCCCCC--C----cc
Q 018474 107 VILCDN----------EKGLLKVT--EE-G----VEAIV-PDA----SFTNDVIAASDGTLYFTVASTKYT--P----TD 158 (355)
Q Consensus 107 L~v~~~----------~~gl~~~~--~~-g----~~~~~-~~~----~~~~~l~~d~dG~ly~~d~~~~~~--~----~~ 158 (355)
||++-. ...|.|+. .. . .+.+. ... .+-..|++++||.||++....... . ..
T Consensus 99 lYvsyt~~~~~~~~~~~~~I~R~~l~~~~~~l~~~~~Il~~lP~~~~H~GgrI~FgPDG~LYVs~GD~g~~~~~n~~~~~ 178 (454)
T TIGR03606 99 VYISYTYKNGDKELPNHTKIVRYTYDKSTQTLEKPVDLLAGLPAGNDHNGGRLVFGPDGKIYYTIGEQGRNQGANFFLPN 178 (454)
T ss_pred EEEEEeccCCCCCccCCcEEEEEEecCCCCccccceEEEecCCCCCCcCCceEEECCCCcEEEEECCCCCCCcccccCcc
Confidence 898741 23466664 21 1 22222 111 334568999999999987543110 0 00
Q ss_pred cccc------c---cccCCCCeEEEEeCCCC-----------eEEEeeccccccccEEEeCCCCEEEEEeCCC---CeEE
Q 018474 159 FYKD------M---AEGKPYGQLRKYDPKLK-----------ETTVLHEGFYFANGIALSKNEDFVVVCESWK---FRCR 215 (355)
Q Consensus 159 ~~~~------~---~~~~~~g~l~~~dp~~~-----------~~~~~~~~~~~pngi~~~~dg~~l~v~~~~~---~~i~ 215 (355)
.... + -.....|.|+|+|+++. .-+.++.++.+|.|++++|+|+ ||++|.+. ..|.
T Consensus 179 ~aQ~~~~~~~~~~~d~~~~~GkILRin~DGsiP~dNPf~~g~~~eIyA~G~RNp~Gla~dp~G~-Lw~~e~Gp~~~DEiN 257 (454)
T TIGR03606 179 QAQHTPTQQELNGKDYHAYMGKVLRLNLDGSIPKDNPSINGVVSHIFTYGHRNPQGLAFTPDGT-LYASEQGPNSDDELN 257 (454)
T ss_pred hhccccccccccccCcccCceEEEEEcCCCCCCCCCCccCCCcceEEEEeccccceeEECCCCC-EEEEecCCCCCcEEE
Confidence 0000 0 01133678999998743 1256678899999999999876 99998764 3455
Q ss_pred EEE
Q 018474 216 RYW 218 (355)
Q Consensus 216 ~~~ 218 (355)
++.
T Consensus 258 ~I~ 260 (454)
T TIGR03606 258 IIV 260 (454)
T ss_pred Eec
Confidence 543
No 59
>PRK02889 tolB translocation protein TolB; Provisional
Probab=98.44 E-value=0.00042 Score=66.50 Aligned_cols=135 Identities=13% Similarity=0.053 Sum_probs=78.4
Q ss_pred CeEECCCCC-EEEEeCCC---cEEEEcC-CC-eEEEcCCcCCcccEEEccCC-cEEEEeCCCCCCCccccccccccCCCC
Q 018474 98 GLTTTKDGG-VILCDNEK---GLLKVTE-EG-VEAIVPDASFTNDVIAASDG-TLYFTVASTKYTPTDFYKDMAEGKPYG 170 (355)
Q Consensus 98 gl~~d~~g~-L~v~~~~~---gl~~~~~-~g-~~~~~~~~~~~~~l~~d~dG-~ly~~d~~~~~~~~~~~~~~~~~~~~g 170 (355)
..++.++|+ |+++.... .|+.++. +| .+.+...........++||| .|.++... ....
T Consensus 200 ~p~wSPDG~~la~~s~~~~~~~I~~~dl~~g~~~~l~~~~g~~~~~~~SPDG~~la~~~~~---------------~g~~ 264 (427)
T PRK02889 200 SPAWSPDGTKLAYVSFESKKPVVYVHDLATGRRRVVANFKGSNSAPAWSPDGRTLAVALSR---------------DGNS 264 (427)
T ss_pred cceEcCCCCEEEEEEccCCCcEEEEEECCCCCEEEeecCCCCccceEECCCCCEEEEEEcc---------------CCCc
Confidence 677888886 44443322 3888884 56 55554332344567899999 56665322 1123
Q ss_pred eEEEEeCCCCeEEEeeccccccccEEEeCCCCEEEEEeCC--CCeEEEEEeCCCCCcceeEecccCCCCcCceEECCCCC
Q 018474 171 QLRKYDPKLKETTVLHEGFYFANGIALSKNEDFVVVCESW--KFRCRRYWLKGDRAGILDAFIENLPGGPDNINLAPDGS 248 (355)
Q Consensus 171 ~l~~~dp~~~~~~~~~~~~~~pngi~~~~dg~~l~v~~~~--~~~i~~~~~~~~~~~~~~~~~~~~~g~p~~i~~d~~G~ 248 (355)
.+|.+|.++++.+.+..........+++|||+.++++... ...|+.++.++... +.+. ..........++++|+
T Consensus 265 ~Iy~~d~~~~~~~~lt~~~~~~~~~~wSpDG~~l~f~s~~~g~~~Iy~~~~~~g~~---~~lt-~~g~~~~~~~~SpDG~ 340 (427)
T PRK02889 265 QIYTVNADGSGLRRLTQSSGIDTEPFFSPDGRSIYFTSDRGGAPQIYRMPASGGAA---QRVT-FTGSYNTSPRISPDGK 340 (427)
T ss_pred eEEEEECCCCCcEECCCCCCCCcCeEEcCCCCEEEEEecCCCCcEEEEEECCCCce---EEEe-cCCCCcCceEECCCCC
Confidence 6999998777766554333233456899999988776432 33577777654322 1111 1111223456788887
Q ss_pred EEE
Q 018474 249 FWI 251 (355)
Q Consensus 249 lwv 251 (355)
..+
T Consensus 341 ~Ia 343 (427)
T PRK02889 341 LLA 343 (427)
T ss_pred EEE
Confidence 543
No 60
>PRK11138 outer membrane biogenesis protein BamB; Provisional
Probab=98.43 E-value=0.00089 Score=63.56 Aligned_cols=138 Identities=17% Similarity=0.132 Sum_probs=78.9
Q ss_pred EEEeeCCCeEEEEecCCEEEEEEcCCCeeEEeecc-CC-----------CcccCeEECCCCCEEEEeCCCcEEEEc-CCC
Q 018474 57 VSVVVSKGALYTATRDGWVKYFILHNETLVNWKHI-DS-----------QSLLGLTTTKDGGVILCDNEKGLLKVT-EEG 123 (355)
Q Consensus 57 i~~d~~~g~l~~~~~~g~i~~~~~~~g~~~~~~~~-~~-----------~p~~gl~~d~~g~L~v~~~~~gl~~~~-~~g 123 (355)
.+++ ++.+|+.+.+|.++.+|.++|+.. |... .. ....+.+.+ ++++|+++..+.++.+| ++|
T Consensus 65 Pvv~--~~~vy~~~~~g~l~ald~~tG~~~-W~~~~~~~~~~~~~~~~~~~~~~~~v~-~~~v~v~~~~g~l~ald~~tG 140 (394)
T PRK11138 65 PAVA--YNKVYAADRAGLVKALDADTGKEI-WSVDLSEKDGWFSKNKSALLSGGVTVA-GGKVYIGSEKGQVYALNAEDG 140 (394)
T ss_pred cEEE--CCEEEEECCCCeEEEEECCCCcEe-eEEcCCCcccccccccccccccccEEE-CCEEEEEcCCCEEEEEECCCC
Confidence 3454 779999999999999999888743 3211 11 111034443 67899998766799999 477
Q ss_pred -eEEEcCCcCCcc-cEEEccCCcEEEEeCCCCCCCccccccccccCCCCeEEEEeCCCCeEEEeecccccc-------cc
Q 018474 124 -VEAIVPDASFTN-DVIAASDGTLYFTVASTKYTPTDFYKDMAEGKPYGQLRKYDPKLKETTVLHEGFYFA-------NG 194 (355)
Q Consensus 124 -~~~~~~~~~~~~-~l~~d~dG~ly~~d~~~~~~~~~~~~~~~~~~~~g~l~~~dp~~~~~~~~~~~~~~p-------ng 194 (355)
..--......+. ..++ .+|.+|+.+. .+.++.+|+++|+...-.+.. .| ..
T Consensus 141 ~~~W~~~~~~~~~ssP~v-~~~~v~v~~~------------------~g~l~ald~~tG~~~W~~~~~-~~~~~~~~~~s 200 (394)
T PRK11138 141 EVAWQTKVAGEALSRPVV-SDGLVLVHTS------------------NGMLQALNESDGAVKWTVNLD-VPSLTLRGESA 200 (394)
T ss_pred CCcccccCCCceecCCEE-ECCEEEEECC------------------CCEEEEEEccCCCEeeeecCC-CCcccccCCCC
Confidence 322111101111 1122 2567877632 457999999888765433211 11 01
Q ss_pred EEEeCCCCEEEEEeCCCCeEEEEEeCC
Q 018474 195 IALSKNEDFVVVCESWKFRCRRYWLKG 221 (355)
Q Consensus 195 i~~~~dg~~l~v~~~~~~~i~~~~~~~ 221 (355)
-++. + ..+|+.. ..+.++.++.+.
T Consensus 201 P~v~-~-~~v~~~~-~~g~v~a~d~~~ 224 (394)
T PRK11138 201 PATA-F-GGAIVGG-DNGRVSAVLMEQ 224 (394)
T ss_pred CEEE-C-CEEEEEc-CCCEEEEEEccC
Confidence 1222 2 3466654 567888888754
No 61
>KOG0318 consensus WD40 repeat stress protein/actin interacting protein [Cytoskeleton]
Probab=98.43 E-value=0.00038 Score=65.28 Aligned_cols=189 Identities=17% Similarity=0.181 Sum_probs=124.9
Q ss_pred EecCCCCCCCceEEEeeCCCeEEEEecCCEEEEEEcCCCeeEEeec--cCCCcccCeEECCCCCEEEEeCCCcEEEEc-C
Q 018474 45 KLGEGCVNHPEDVSVVVSKGALYTATRDGWVKYFILHNETLVNWKH--IDSQSLLGLTTTKDGGVILCDNEKGLLKVT-E 121 (355)
Q Consensus 45 ~~~~~~~~~p~~i~~d~~~g~l~~~~~~g~i~~~~~~~g~~~~~~~--~~~~p~~gl~~d~~g~L~v~~~~~gl~~~~-~ 121 (355)
.+.-|..+.-.+++..+++..+|.++++|.|..++..+|...++.. ..+.+. +|+.++.+.++-..+.+-|.+++ +
T Consensus 314 ~~i~GHnK~ITaLtv~~d~~~i~SgsyDG~I~~W~~~~g~~~~~~g~~h~nqI~-~~~~~~~~~~~t~g~Dd~l~~~~~~ 392 (603)
T KOG0318|consen 314 KVISGHNKSITALTVSPDGKTIYSGSYDGHINSWDSGSGTSDRLAGKGHTNQIK-GMAASESGELFTIGWDDTLRVISLK 392 (603)
T ss_pred heecccccceeEEEEcCCCCEEEeeccCceEEEEecCCccccccccccccceEE-EEeecCCCcEEEEecCCeEEEEecc
Confidence 3445777888899999888889999999999999987776555421 234577 89888889999988887666665 3
Q ss_pred -CC-eEEE-cCCcCCcccEEEccCC-cEEEEeCCCCCCCccccccccccCCCCeEEEEeCCCCeEEEeeccccccccEEE
Q 018474 122 -EG-VEAI-VPDASFTNDVIAASDG-TLYFTVASTKYTPTDFYKDMAEGKPYGQLRKYDPKLKETTVLHEGFYFANGIAL 197 (355)
Q Consensus 122 -~g-~~~~-~~~~~~~~~l~~d~dG-~ly~~d~~~~~~~~~~~~~~~~~~~~g~l~~~dp~~~~~~~~~~~~~~pngi~~ 197 (355)
.+ -+.. ..-...|-++++.++| .+.++.-. .+..+.-.++ ... ..-...+.++|+
T Consensus 393 ~~~~t~~~~~~lg~QP~~lav~~d~~~avv~~~~-------------------~iv~l~~~~~-~~~-~~~~y~~s~vAv 451 (603)
T KOG0318|consen 393 DNGYTKSEVVKLGSQPKGLAVLSDGGTAVVACIS-------------------DIVLLQDQTK-VSS-IPIGYESSAVAV 451 (603)
T ss_pred cCcccccceeecCCCceeEEEcCCCCEEEEEecC-------------------cEEEEecCCc-cee-eccccccceEEE
Confidence 33 2211 1111568899999887 44444322 2322221122 111 112345789999
Q ss_pred eCCCCEEEEEeCCCCeEEEEEeCCCCCcceeEecccCCCCcCceEECCCCCEEEEeecCC
Q 018474 198 SKNEDFVVVCESWKFRCRRYWLKGDRAGILDAFIENLPGGPDNINLAPDGSFWIGLIKMN 257 (355)
Q Consensus 198 ~~dg~~l~v~~~~~~~i~~~~~~~~~~~~~~~~~~~~~g~p~~i~~d~~G~lwv~~~~~~ 257 (355)
+||++.+.+.. ..+.|+.|.++|....+..... ...+-+.-+++++||.+++++-..|
T Consensus 452 ~~~~~~vaVGG-~Dgkvhvysl~g~~l~ee~~~~-~h~a~iT~vaySpd~~yla~~Da~r 509 (603)
T KOG0318|consen 452 SPDGSEVAVGG-QDGKVHVYSLSGDELKEEAKLL-EHRAAITDVAYSPDGAYLAAGDASR 509 (603)
T ss_pred cCCCCEEEEec-ccceEEEEEecCCcccceeeee-cccCCceEEEECCCCcEEEEeccCC
Confidence 99999776665 4577999999875432221222 3455678899999999998886643
No 62
>PF06977 SdiA-regulated: SdiA-regulated; InterPro: IPR009722 This entry represents a conserved region approximately 100 residues long within a number of hypothetical bacterial proteins that may be regulated by SdiA, a member of the LuxR family of transcriptional regulators []. Some proteins contain the IPR001258 from INTERPRO repeat.; PDB: 3QQZ_A.
Probab=98.42 E-value=0.00016 Score=63.59 Aligned_cols=188 Identities=13% Similarity=0.145 Sum_probs=104.7
Q ss_pred CCCCCCceEEEeeCCCeEEEEe-cCCEEEEEEcCCCeeE-EeeccC-CCcccCeEECCCCCEEEEeC-CCcEEEEc--C-
Q 018474 49 GCVNHPEDVSVVVSKGALYTAT-RDGWVKYFILHNETLV-NWKHID-SQSLLGLTTTKDGGVILCDN-EKGLLKVT--E- 121 (355)
Q Consensus 49 ~~~~~p~~i~~d~~~g~l~~~~-~~g~i~~~~~~~g~~~-~~~~~~-~~p~~gl~~d~~g~L~v~~~-~~gl~~~~--~- 121 (355)
|....+.+|+++++.+.||+.. ..+.|+.++. +|+.. ++...+ +.+- |++.-.+|.+.+++- .+.++.+. .
T Consensus 19 g~~~e~SGLTy~pd~~tLfaV~d~~~~i~els~-~G~vlr~i~l~g~~D~E-gI~y~g~~~~vl~~Er~~~L~~~~~~~~ 96 (248)
T PF06977_consen 19 GILDELSGLTYNPDTGTLFAVQDEPGEIYELSL-DGKVLRRIPLDGFGDYE-GITYLGNGRYVLSEERDQRLYIFTIDDD 96 (248)
T ss_dssp T--S-EEEEEEETTTTEEEEEETTTTEEEEEET-T--EEEEEE-SS-SSEE-EEEE-STTEEEEEETTTTEEEEEEE---
T ss_pred CccCCccccEEcCCCCeEEEEECCCCEEEEEcC-CCCEEEEEeCCCCCCce-eEEEECCCEEEEEEcCCCcEEEEEEecc
Confidence 4345699999998788899754 5789999997 56544 333232 4677 999887777777663 34566665 2
Q ss_pred CC-e-----EEEcCCc-----CCcccEEEccC-CcEEEEeCCCCCCCccccccccccCCCCeEEEEeC--CCCeEEEee-
Q 018474 122 EG-V-----EAIVPDA-----SFTNDVIAASD-GTLYFTVASTKYTPTDFYKDMAEGKPYGQLRKYDP--KLKETTVLH- 186 (355)
Q Consensus 122 ~g-~-----~~~~~~~-----~~~~~l~~d~d-G~ly~~d~~~~~~~~~~~~~~~~~~~~g~l~~~dp--~~~~~~~~~- 186 (355)
+. + +.+.-.. ....+++.|+. +++|+.-.. . -..+|.++. .........
T Consensus 97 ~~~~~~~~~~~~~l~~~~~~N~G~EGla~D~~~~~L~v~kE~---------------~-P~~l~~~~~~~~~~~~~~~~~ 160 (248)
T PF06977_consen 97 TTSLDRADVQKISLGFPNKGNKGFEGLAYDPKTNRLFVAKER---------------K-PKRLYEVNGFPGGFDLFVSDD 160 (248)
T ss_dssp -TT--EEEEEEEE---S---SS--EEEEEETTTTEEEEEEES---------------S-SEEEEEEESTT-SS--EEEE-
T ss_pred ccccchhhceEEecccccCCCcceEEEEEcCCCCEEEEEeCC---------------C-ChhhEEEccccCccceeeccc
Confidence 22 2 2222111 45678999986 478876432 1 124555553 122222111
Q ss_pred -------ccccccccEEEeCCCCEEEEEeCCCCeEEEEEeCCCCCcceeEecccCC------CCcCceEECCCCCEEEEe
Q 018474 187 -------EGFYFANGIALSKNEDFVVVCESWKFRCRRYWLKGDRAGILDAFIENLP------GGPDNINLAPDGSFWIGL 253 (355)
Q Consensus 187 -------~~~~~pngi~~~~dg~~l~v~~~~~~~i~~~~~~~~~~~~~~~~~~~~~------g~p~~i~~d~~G~lwv~~ 253 (355)
.....+.+++++|....+|+-.....+|..++.+|.-.+.. .+..... ..|-|+++|++|+|||+.
T Consensus 161 ~~~~~~~~~~~d~S~l~~~p~t~~lliLS~es~~l~~~d~~G~~~~~~-~L~~g~~gl~~~~~QpEGIa~d~~G~LYIvs 239 (248)
T PF06977_consen 161 QDLDDDKLFVRDLSGLSYDPRTGHLLILSDESRLLLELDRQGRVVSSL-SLDRGFHGLSKDIPQPEGIAFDPDGNLYIVS 239 (248)
T ss_dssp HHHH-HT--SS---EEEEETTTTEEEEEETTTTEEEEE-TT--EEEEE-E-STTGGG-SS---SEEEEEE-TT--EEEEE
T ss_pred cccccccceeccccceEEcCCCCeEEEEECCCCeEEEECCCCCEEEEE-EeCCcccCcccccCCccEEEECCCCCEEEEc
Confidence 01334789999999888999988889999999766422222 1221111 258899999999999998
Q ss_pred ec
Q 018474 254 IK 255 (355)
Q Consensus 254 ~~ 255 (355)
..
T Consensus 240 Ep 241 (248)
T PF06977_consen 240 EP 241 (248)
T ss_dssp TT
T ss_pred CC
Confidence 54
No 63
>KOG0291 consensus WD40-repeat-containing subunit of the 18S rRNA processing complex [RNA processing and modification]
Probab=98.42 E-value=0.0003 Score=68.61 Aligned_cols=190 Identities=13% Similarity=0.127 Sum_probs=122.5
Q ss_pred CeEECCCCC-EEEEeCCC-cEEEEc-CCC---eEEEcCCcCCcccEEEccCCcEEEEeCCCCCCCccccccccccCCCCe
Q 018474 98 GLTTTKDGG-VILCDNEK-GLLKVT-EEG---VEAIVPDASFTNDVIAASDGTLYFTVASTKYTPTDFYKDMAEGKPYGQ 171 (355)
Q Consensus 98 gl~~d~~g~-L~v~~~~~-gl~~~~-~~g---~~~~~~~~~~~~~l~~d~dG~ly~~d~~~~~~~~~~~~~~~~~~~~g~ 171 (355)
.+++...|. |-++...- .|..++ ... +++ ......++.++.+|||.+.+|... .|.
T Consensus 312 t~~~N~tGDWiA~g~~klgQLlVweWqsEsYVlKQ-QgH~~~i~~l~YSpDgq~iaTG~e-----------------DgK 373 (893)
T KOG0291|consen 312 TVSFNSTGDWIAFGCSKLGQLLVWEWQSESYVLKQ-QGHSDRITSLAYSPDGQLIATGAE-----------------DGK 373 (893)
T ss_pred EEEecccCCEEEEcCCccceEEEEEeeccceeeec-cccccceeeEEECCCCcEEEeccC-----------------CCc
Confidence 566665555 33343332 344444 322 222 122367889999999999888544 567
Q ss_pred EEEEeCCCC-eEEEeeccccccccEEEeCCCCEEEEEeCCCCeEEEEEeCCCCCcceeEecccCCCCcCceEECCCCCEE
Q 018474 172 LRKYDPKLK-ETTVLHEGFYFANGIALSKNEDFVVVCESWKFRCRRYWLKGDRAGILDAFIENLPGGPDNINLAPDGSFW 250 (355)
Q Consensus 172 l~~~dp~~~-~~~~~~~~~~~pngi~~~~dg~~l~v~~~~~~~i~~~~~~~~~~~~~~~~~~~~~g~p~~i~~d~~G~lw 250 (355)
+-.||..++ -+.++.+.-..-.++.++..|+ .+++.+..++|..+|+. +...+++|....|..-.-++.|+.|.+.
T Consensus 374 VKvWn~~SgfC~vTFteHts~Vt~v~f~~~g~-~llssSLDGtVRAwDlk--RYrNfRTft~P~p~QfscvavD~sGelV 450 (893)
T KOG0291|consen 374 VKVWNTQSGFCFVTFTEHTSGVTAVQFTARGN-VLLSSSLDGTVRAWDLK--RYRNFRTFTSPEPIQFSCVAVDPSGELV 450 (893)
T ss_pred EEEEeccCceEEEEeccCCCceEEEEEEecCC-EEEEeecCCeEEeeeec--ccceeeeecCCCceeeeEEEEcCCCCEE
Confidence 878886554 3445555555667899999998 66777788999999984 3456666653333334457889999887
Q ss_pred EEeecCCchhhHhhhcchhHHHHHHhccchhhcccCCCCCCceEEEEEeCCCCeEEEEEECCCCCcccceeEEEEe--CC
Q 018474 251 IGLIKMNQTGVRAIQKCREKWELLDAYPGLISLLLPMGSDAGARVVKVDGNDGKIIRDFNDPDATYISFVTSAAEF--DG 328 (355)
Q Consensus 251 v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~g~~~~~~~~~~g~~~~~~~~~~~~--~g 328 (355)
++.... .-.|+..+-++|+.+..+.+++|. ++.+... +.
T Consensus 451 ~AG~~d-----------------------------------~F~IfvWS~qTGqllDiLsGHEgP----Vs~l~f~~~~~ 491 (893)
T KOG0291|consen 451 CAGAQD-----------------------------------SFEIFVWSVQTGQLLDILSGHEGP----VSGLSFSPDGS 491 (893)
T ss_pred Eeeccc-----------------------------------eEEEEEEEeecCeeeehhcCCCCc----ceeeEEccccC
Confidence 776541 135888887799999999999884 4444443 34
Q ss_pred EEEEeecCCCeEEEeeCCCC
Q 018474 329 NLYLASLQSNFIGILPLDGP 348 (355)
Q Consensus 329 ~L~v~~~~~~~i~~~~~~~~ 348 (355)
.|+-+++ ...|..-+.=++
T Consensus 492 ~LaS~SW-DkTVRiW~if~s 510 (893)
T KOG0291|consen 492 LLASGSW-DKTVRIWDIFSS 510 (893)
T ss_pred eEEeccc-cceEEEEEeecc
Confidence 4444554 666666555444
No 64
>KOG0315 consensus G-protein beta subunit-like protein (contains WD40 repeats) [General function prediction only]
Probab=98.40 E-value=0.00011 Score=62.82 Aligned_cols=183 Identities=14% Similarity=0.106 Sum_probs=110.3
Q ss_pred CCCceEEEeeCCCeEEEEecCCEEEEEEcCCCeeEEeeccCCCcccCeEECCC-CCEEEEeCCCcEEEEc-CCC--eEE-
Q 018474 52 NHPEDVSVVVSKGALYTATRDGWVKYFILHNETLVNWKHIDSQSLLGLTTTKD-GGVILCDNEKGLLKVT-EEG--VEA- 126 (355)
Q Consensus 52 ~~p~~i~~d~~~g~l~~~~~~g~i~~~~~~~g~~~~~~~~~~~p~~gl~~d~~-g~L~v~~~~~gl~~~~-~~g--~~~- 126 (355)
+.-.++.+..++.-+|.+++||.+..+|...-...+........+ .+.+.++ +.|++++..+.+...| .+. .+.
T Consensus 84 kNVtaVgF~~dgrWMyTgseDgt~kIWdlR~~~~qR~~~~~spVn-~vvlhpnQteLis~dqsg~irvWDl~~~~c~~~l 162 (311)
T KOG0315|consen 84 KNVTAVGFQCDGRWMYTGSEDGTVKIWDLRSLSCQRNYQHNSPVN-TVVLHPNQTELISGDQSGNIRVWDLGENSCTHEL 162 (311)
T ss_pred CceEEEEEeecCeEEEecCCCceEEEEeccCcccchhccCCCCcc-eEEecCCcceEEeecCCCcEEEEEccCCcccccc
Confidence 344566777567778899999988888875533332222223445 6777754 5799998766666666 343 333
Q ss_pred EcCCcCCcccEEEccCCcEEEEeCCCCCCCccccccccccCCCCeEEEEeCCCCeEE-Eee--cccc----ccccEEEeC
Q 018474 127 IVPDASFTNDVIAASDGTLYFTVASTKYTPTDFYKDMAEGKPYGQLRKYDPKLKETT-VLH--EGFY----FANGIALSK 199 (355)
Q Consensus 127 ~~~~~~~~~~l~~d~dG~ly~~d~~~~~~~~~~~~~~~~~~~~g~l~~~dp~~~~~~-~~~--~~~~----~pngi~~~~ 199 (355)
++....++.++.+++||...++-.. .|..|+|+.-+++.. .+. ..+. ..--..+||
T Consensus 163 iPe~~~~i~sl~v~~dgsml~a~nn-----------------kG~cyvW~l~~~~~~s~l~P~~k~~ah~~~il~C~lSP 225 (311)
T KOG0315|consen 163 IPEDDTSIQSLTVMPDGSMLAAANN-----------------KGNCYVWRLLNHQTASELEPVHKFQAHNGHILRCLLSP 225 (311)
T ss_pred CCCCCcceeeEEEcCCCcEEEEecC-----------------CccEEEEEccCCCccccceEhhheecccceEEEEEECC
Confidence 3444488999999999987766433 567777776444321 111 1111 122356899
Q ss_pred CCCEEEEEeCCCCeEEEEEeCCCCCcceeEecccCCCCcCceEECCCCCEEEEeec
Q 018474 200 NEDFVVVCESWKFRCRRYWLKGDRAGILDAFIENLPGGPDNINLAPDGSFWIGLIK 255 (355)
Q Consensus 200 dg~~l~v~~~~~~~i~~~~~~~~~~~~~~~~~~~~~g~p~~i~~d~~G~lwv~~~~ 255 (355)
|++.| .+.+....+..++.++- -+.+...++..+--=+.+++.||.+.|....
T Consensus 226 d~k~l-at~ssdktv~iwn~~~~--~kle~~l~gh~rWvWdc~FS~dg~YlvTass 278 (311)
T KOG0315|consen 226 DVKYL-ATCSSDKTVKIWNTDDF--FKLELVLTGHQRWVWDCAFSADGEYLVTASS 278 (311)
T ss_pred CCcEE-EeecCCceEEEEecCCc--eeeEEEeecCCceEEeeeeccCccEEEecCC
Confidence 99955 44455677888877653 1222222222222233578899988887654
No 65
>TIGR03032 conserved hypothetical protein TIGR03032. This protein family is uncharacterized. A number of motifs are conserved perfectly among all member sequences. The function of this protein is unknown.
Probab=98.39 E-value=0.00025 Score=63.15 Aligned_cols=223 Identities=18% Similarity=0.174 Sum_probs=131.7
Q ss_pred CCCCceEEEeeCCCeEEEEecCCEEEEEEcCCC-----e----e-EEe------eccCCCcccCeEECCCCCEEEEeCC-
Q 018474 51 VNHPEDVSVVVSKGALYTATRDGWVKYFILHNE-----T----L-VNW------KHIDSQSLLGLTTTKDGGVILCDNE- 113 (355)
Q Consensus 51 ~~~p~~i~~d~~~g~l~~~~~~g~i~~~~~~~g-----~----~-~~~------~~~~~~p~~gl~~d~~g~L~v~~~~- 113 (355)
+..|=+++.. ++.||+++... |+++....+ + . .-| .+..-.++ -|++ .++++|+....
T Consensus 48 F~r~MGl~~~--~~~l~~~t~~q-iw~f~~~~n~l~~~~~~~~~D~~yvPr~~~~TGdidiH-dia~-~~~~l~fVNT~f 122 (335)
T TIGR03032 48 FPRPMGLAVS--PQSLTLGTRYQ-LWRFANVDNLLPAGQTHPGYDRLYVPRASYVTGDIDAH-DLAL-GAGRLLFVNTLF 122 (335)
T ss_pred cCccceeeee--CCeEEEEEcce-eEEcccccccccccccCCCCCeEEeeeeeeeccCcchh-heee-cCCcEEEEECcc
Confidence 5677888886 67899998754 788722111 1 1 111 11122467 7888 57788776654
Q ss_pred CcEEEEcCCC-eE-E--------EcCCc-CCcccEEEccCCcEEEEeCCCCCCCcccccccc-ccCCCCeEEEEeCCCCe
Q 018474 114 KGLLKVTEEG-VE-A--------IVPDA-SFTNDVIAASDGTLYFTVASTKYTPTDFYKDMA-EGKPYGQLRKYDPKLKE 181 (355)
Q Consensus 114 ~gl~~~~~~g-~~-~--------~~~~~-~~~~~l~~d~dG~ly~~d~~~~~~~~~~~~~~~-~~~~~g~l~~~dp~~~~ 181 (355)
.-|..+++.. +. . ++... -+.|+++.....--|+|--+. .+. ..-| +....|++. +|-.+++
T Consensus 123 SCLatl~~~~SF~P~WkPpFIs~la~eDRCHLNGlA~~~g~p~yVTa~~~-sD~----~~gWR~~~~~gG~v-idv~s~e 196 (335)
T TIGR03032 123 SCLATVSPDYSFVPLWKPPFISKLAPEDRCHLNGMALDDGEPRYVTALSQ-SDV----ADGWREGRRDGGCV-IDIPSGE 196 (335)
T ss_pred eeEEEECCCCccccccCCccccccCccCceeecceeeeCCeEEEEEEeec-cCC----cccccccccCCeEE-EEeCCCC
Confidence 4455665433 22 2 22222 578889886544577764221 110 1111 223344544 5655664
Q ss_pred EEEeeccccccccEEEeCCCCEEEEEeCCCCeEEEEEeCCCCCcceeEecccCCCCcCceEECCCCC-EEEEeecCC-ch
Q 018474 182 TTVLHEGFYFANGIALSKNEDFVVVCESWKFRCRRYWLKGDRAGILDAFIENLPGGPDNINLAPDGS-FWIGLIKMN-QT 259 (355)
Q Consensus 182 ~~~~~~~~~~pngi~~~~dg~~l~v~~~~~~~i~~~~~~~~~~~~~~~~~~~~~g~p~~i~~d~~G~-lwv~~~~~~-~~ 259 (355)
.+.+++.+|.+-.++ ||+ ||++++..+.+.+++.+. +..+..+ ..||+|+|+.+. |+ ++|++.+.| +.
T Consensus 197 --vl~~GLsmPhSPRWh-dgr-LwvldsgtGev~~vD~~~---G~~e~Va-~vpG~~rGL~f~--G~llvVgmSk~R~~~ 266 (335)
T TIGR03032 197 --VVASGLSMPHSPRWY-QGK-LWLLNSGRGELGYVDPQA---GKFQPVA-FLPGFTRGLAFA--GDFAFVGLSKLRESR 266 (335)
T ss_pred --EEEcCccCCcCCcEe-CCe-EEEEECCCCEEEEEcCCC---CcEEEEE-ECCCCCccccee--CCEEEEEeccccCCC
Confidence 467899999888887 455 999999999999999742 4455444 678999999987 66 568888876 22
Q ss_pred hhHhhhcchhHHHHHHhccchhhcccCCCCCCceEEEEEeCCCCeEEEEEECC
Q 018474 260 GVRAIQKCREKWELLDAYPGLISLLLPMGSDAGARVVKVDGNDGKIIRDFNDP 312 (355)
Q Consensus 260 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~g~~~~~~~~~ 312 (355)
.+.-+ |...+.- ...-||..+|-.+|+++..+.-.
T Consensus 267 ~f~gl---pl~~~l~---------------~~~CGv~vidl~tG~vv~~l~fe 301 (335)
T TIGR03032 267 VFGGL---PIEERLD---------------ALGCGVAVIDLNSGDVVHWLRFE 301 (335)
T ss_pred CcCCC---chhhhhh---------------hhcccEEEEECCCCCEEEEEEeC
Confidence 21111 1111100 11247888887688877666543
No 66
>PF07995 GSDH: Glucose / Sorbosone dehydrogenase; InterPro: IPR012938 Proteins containing this domain are thought to be glucose/sorbosone dehydrogenases. The best characterised of these proteins is soluble glucose dehydrogenase (P13650 from SWISSPROT) from Acinetobacter calcoaceticus, which oxidises glucose to gluconolactone. The enzyme is a calcium-dependent homodimer which uses PQQ as a cofactor [].; GO: 0016901 oxidoreductase activity, acting on the CH-OH group of donors, quinone or similar compound as acceptor, 0048038 quinone binding, 0005975 carbohydrate metabolic process; PDB: 2ISM_A 2WG3_D 3HO5_A 3HO4_A 3HO3_A 2WFT_A 2WG4_B 2WFX_B 1CRU_A 1CQ1_B ....
Probab=98.38 E-value=5.2e-06 Score=76.70 Aligned_cols=202 Identities=17% Similarity=0.192 Sum_probs=109.9
Q ss_pred CCCCceEEEee---CCCeEEEEecC---------CEEEEEEcCCC--ee---EEe----ec--cC-CCcccCeEECCCCC
Q 018474 51 VNHPEDVSVVV---SKGALYTATRD---------GWVKYFILHNE--TL---VNW----KH--ID-SQSLLGLTTTKDGG 106 (355)
Q Consensus 51 ~~~p~~i~~d~---~~g~l~~~~~~---------g~i~~~~~~~g--~~---~~~----~~--~~-~~p~~gl~~d~~g~ 106 (355)
-.+.-+|+++| .++.+|+.... .+|.|+....+ .. +.+ .. .. .... +|+++++|.
T Consensus 48 ~~gllgia~~p~f~~n~~lYv~~t~~~~~~~~~~~~v~r~~~~~~~~~~~~~~~l~~~~p~~~~~~H~g~-~l~fgpDG~ 126 (331)
T PF07995_consen 48 ERGLLGIAFHPDFASNGYLYVYYTNADEDGGDNDNRVVRFTLSDGDGDLSSEEVLVTGLPDTSSGNHNGG-GLAFGPDGK 126 (331)
T ss_dssp TBSEEEEEE-TTCCCC-EEEEEEEEE-TSSSSEEEEEEEEEEETTSCEEEEEEEEEEEEES-CSSSS-EE-EEEE-TTSE
T ss_pred cCCcccceeccccCCCCEEEEEEEcccCCCCCcceeeEEEeccCCccccccceEEEEEeCCCCCCCCCCc-cccCCCCCc
Confidence 46788999995 25889986542 36777765433 21 111 11 11 2245 799999999
Q ss_pred EEEEeCC--------------CcEEEEcCCC-e--------------EEEcCCcCCcccEEEccC-CcEEEEeCCCCCCC
Q 018474 107 VILCDNE--------------KGLLKVTEEG-V--------------EAIVPDASFTNDVIAASD-GTLYFTVASTKYTP 156 (355)
Q Consensus 107 L~v~~~~--------------~gl~~~~~~g-~--------------~~~~~~~~~~~~l~~d~d-G~ly~~d~~~~~~~ 156 (355)
|||+... +.|++++++| + +.++.....|.++++|+. |+||+++.+....
T Consensus 127 LYvs~G~~~~~~~~~~~~~~~G~ilri~~dG~~p~dnP~~~~~~~~~~i~A~GlRN~~~~~~d~~tg~l~~~d~G~~~~- 205 (331)
T PF07995_consen 127 LYVSVGDGGNDDNAQDPNSLRGKILRIDPDGSIPADNPFVGDDGADSEIYAYGLRNPFGLAFDPNTGRLWAADNGPDGW- 205 (331)
T ss_dssp EEEEEB-TTTGGGGCSTTSSTTEEEEEETTSSB-TTSTTTTSTTSTTTEEEE--SEEEEEEEETTTTEEEEEEE-SSSS-
T ss_pred EEEEeCCCCCcccccccccccceEEEecccCcCCCCCccccCCCceEEEEEeCCCccccEEEECCCCcEEEEccCCCCC-
Confidence 9997531 2377887554 2 223333388999999998 9999998652211
Q ss_pred ccccccccccCCCCeEEEE----------e--CCC-CeEEEe--eccccccccEEEeCCC------CEEEEEeCCCCeEE
Q 018474 157 TDFYKDMAEGKPYGQLRKY----------D--PKL-KETTVL--HEGFYFANGIALSKNE------DFVVVCESWKFRCR 215 (355)
Q Consensus 157 ~~~~~~~~~~~~~g~l~~~----------d--p~~-~~~~~~--~~~~~~pngi~~~~dg------~~l~v~~~~~~~i~ 215 (355)
+....+..+...|--+++ . +.. ...... ......|.|+.+.... ..+++++...++|+
T Consensus 206 -dein~i~~G~nYGWP~~~~~~~~~~~~~~~~~~~~~~~~P~~~~~~~~ap~G~~~y~g~~fp~~~g~~~~~~~~~~~i~ 284 (331)
T PF07995_consen 206 -DEINRIEPGGNYGWPYCEGGPKYSGPPIGDAPSCPGFVPPVFAYPPHSAPTGIIFYRGSAFPEYRGDLFVADYGGGRIW 284 (331)
T ss_dssp -EEEEEE-TT-B--TTTBSSSCSTTSS-ECTGSS-TTS---SEEETTT--EEEEEEE-SSSSGGGTTEEEEEETTTTEEE
T ss_pred -cEEEEeccCCcCCCCCCcCCCCCCCCccccccCCCCcCccceeecCccccCceEEECCccCccccCcEEEecCCCCEEE
Confidence 111111111111100000 0 000 000110 1122346777777433 24889998889999
Q ss_pred EEEeCCC-CCcceeEecccCCCCcCceEECCCCCEEEEeec
Q 018474 216 RYWLKGD-RAGILDAFIENLPGGPDNINLAPDGSFWIGLIK 255 (355)
Q Consensus 216 ~~~~~~~-~~~~~~~~~~~~~g~p~~i~~d~~G~lwv~~~~ 255 (355)
++.++.. .....+.+.....+.|.++.+++||.|||++..
T Consensus 285 ~~~~~~~~~~~~~~~~~~~~~~r~~~v~~~pDG~Lyv~~d~ 325 (331)
T PF07995_consen 285 RLDLDEDGSVTEEEEFLGGFGGRPRDVAQGPDGALYVSDDS 325 (331)
T ss_dssp EEEEETTEEEEEEEEECTTSSS-EEEEEEETTSEEEEEE-T
T ss_pred EEeeecCCCccceEEccccCCCCceEEEEcCCCeEEEEECC
Confidence 9998632 344445555445556889999999999999864
No 67
>PRK00178 tolB translocation protein TolB; Provisional
Probab=98.37 E-value=0.00085 Score=64.46 Aligned_cols=157 Identities=13% Similarity=0.104 Sum_probs=88.2
Q ss_pred EEEEEcCCCeeEEeeccCCCcccCeEECCCCC-E-EEEeCC--CcEEEEc-CCC-eEEEcCCcCCcccEEEccCC-cEEE
Q 018474 75 VKYFILHNETLVNWKHIDSQSLLGLTTTKDGG-V-ILCDNE--KGLLKVT-EEG-VEAIVPDASFTNDVIAASDG-TLYF 147 (355)
Q Consensus 75 i~~~~~~~g~~~~~~~~~~~p~~gl~~d~~g~-L-~v~~~~--~gl~~~~-~~g-~~~~~~~~~~~~~l~~d~dG-~ly~ 147 (355)
|+..|.+.+..+.+........ ...+.++|+ | |+.... ..|+.++ .+| .+.+...........++||| .|++
T Consensus 181 l~~~d~~g~~~~~l~~~~~~~~-~p~wSpDG~~la~~s~~~~~~~l~~~~l~~g~~~~l~~~~g~~~~~~~SpDG~~la~ 259 (430)
T PRK00178 181 LQRSDYDGARAVTLLQSREPIL-SPRWSPDGKRIAYVSFEQKRPRIFVQNLDTGRREQITNFEGLNGAPAWSPDGSKLAF 259 (430)
T ss_pred EEEECCCCCCceEEecCCCcee-eeeECCCCCEEEEEEcCCCCCEEEEEECCCCCEEEccCCCCCcCCeEECCCCCEEEE
Confidence 4445554333343333333334 667888886 4 333222 2488888 456 55554332334467899998 4666
Q ss_pred EeCCCCCCCccccccccccCCCCeEEEEeCCCCeEEEeeccccccccEEEeCCCCEEEEEeCC--CCeEEEEEeCCCCCc
Q 018474 148 TVASTKYTPTDFYKDMAEGKPYGQLRKYDPKLKETTVLHEGFYFANGIALSKNEDFVVVCESW--KFRCRRYWLKGDRAG 225 (355)
Q Consensus 148 ~d~~~~~~~~~~~~~~~~~~~~g~l~~~dp~~~~~~~~~~~~~~pngi~~~~dg~~l~v~~~~--~~~i~~~~~~~~~~~ 225 (355)
+... .....+|.+|.++++.+.+...........++|||+.++++... ...|+++++++...
T Consensus 260 ~~~~---------------~g~~~Iy~~d~~~~~~~~lt~~~~~~~~~~~spDg~~i~f~s~~~g~~~iy~~d~~~g~~- 323 (430)
T PRK00178 260 VLSK---------------DGNPEIYVMDLASRQLSRVTNHPAIDTEPFWGKDGRTLYFTSDRGGKPQIYKVNVNGGRA- 323 (430)
T ss_pred EEcc---------------CCCceEEEEECCCCCeEEcccCCCCcCCeEECCCCCEEEEEECCCCCceEEEEECCCCCE-
Confidence 5332 11236999999888877665433334456899999988776533 34688888754332
Q ss_pred ceeEecccCCCCcCceEECCCCCEEE
Q 018474 226 ILDAFIENLPGGPDNINLAPDGSFWI 251 (355)
Q Consensus 226 ~~~~~~~~~~g~p~~i~~d~~G~lwv 251 (355)
+.+. ..........++++|+..+
T Consensus 324 --~~lt-~~~~~~~~~~~Spdg~~i~ 346 (430)
T PRK00178 324 --ERVT-FVGNYNARPRLSADGKTLV 346 (430)
T ss_pred --EEee-cCCCCccceEECCCCCEEE
Confidence 2111 1111223346778886433
No 68
>COG2133 Glucose/sorbosone dehydrogenases [Carbohydrate transport and metabolism]
Probab=98.36 E-value=0.00098 Score=62.15 Aligned_cols=164 Identities=13% Similarity=0.173 Sum_probs=93.3
Q ss_pred eEecCCCCCCCceEEEeeCCCeEEEEecC-CEEEEEEcCCCe--------eEEeecc----------------CCCcccC
Q 018474 44 TKLGEGCVNHPEDVSVVVSKGALYTATRD-GWVKYFILHNET--------LVNWKHI----------------DSQSLLG 98 (355)
Q Consensus 44 ~~~~~~~~~~p~~i~~d~~~g~l~~~~~~-g~i~~~~~~~g~--------~~~~~~~----------------~~~p~~g 98 (355)
+.+..| +..|-+++..|++ .+.+.... |.+..+-. .+. ...+... ...+. +
T Consensus 60 ~~~a~g-Le~p~~~~~lP~G-~~~v~er~~G~l~~i~~-g~~~~~~~~~~~~~~~~~~~Gll~~al~~~fa~~~~~~~-~ 135 (399)
T COG2133 60 EVVAQG-LEHPWGLARLPDG-VLLVTERPTGRLRLISD-GGSASPPVSTVPIVLLRGQGGLLDIALSPDFAQGRLVYF-G 135 (399)
T ss_pred cccccc-ccCchhheecCCc-eEEEEccCCccEEEecC-CCcccccccccceEEeccCCCccceEecccccccceeee-E
Confidence 455666 8899999999555 56655544 65554432 111 0111111 11233 4
Q ss_pred eEECCCCCEEEEeCCCcEEEEc-CCC----eEEE-cCCc----CCcccEEEccCCcEEEEeCCCC-----CCCccccccc
Q 018474 99 LTTTKDGGVILCDNEKGLLKVT-EEG----VEAI-VPDA----SFTNDVIAASDGTLYFTVASTK-----YTPTDFYKDM 163 (355)
Q Consensus 99 l~~d~~g~L~v~~~~~gl~~~~-~~g----~~~~-~~~~----~~~~~l~~d~dG~ly~~d~~~~-----~~~~~~~~~~ 163 (355)
++. ..+.+|+++. ..+.+++ .+. .+.+ ..-+ .+-..|+++|||.||++..+.. ++.......+
T Consensus 136 ~a~-~~~~~~~~n~-~~~~~~~~g~~~l~~~~~i~~~lP~~~~H~g~~l~f~pDG~Lyvs~G~~~~~~~aq~~~~~~Gk~ 213 (399)
T COG2133 136 ISE-PGGGLYVANR-VAIGRLPGGDTKLSEPKVIFRGIPKGGHHFGGRLVFGPDGKLYVTTGSNGDPALAQDNVSLAGKV 213 (399)
T ss_pred EEe-ecCCceEEEE-EEEEEcCCCccccccccEEeecCCCCCCcCcccEEECCCCcEEEEeCCCCCcccccCccccccce
Confidence 444 3445566553 2455665 111 1222 1111 5566799999999999876520 1111111222
Q ss_pred cccCCCCeEEEEeCCCCeEEEeeccccccccEEEeCCCCEEEEEeCCCCeE
Q 018474 164 AEGKPYGQLRKYDPKLKETTVLHEGFYFANGIALSKNEDFVVVCESWKFRC 214 (355)
Q Consensus 164 ~~~~~~g~l~~~dp~~~~~~~~~~~~~~pngi~~~~dg~~l~v~~~~~~~i 214 (355)
++.. ..++...|+.+...+.+..++.+|.|++++|....||.++-+...+
T Consensus 214 ~r~~-~a~~~~~d~p~~~~~i~s~G~RN~qGl~w~P~tg~Lw~~e~g~d~~ 263 (399)
T COG2133 214 LRID-RAGIIPADNPFPNSEIWSYGHRNPQGLAWHPVTGALWTTEHGPDAL 263 (399)
T ss_pred eeec-cCcccccCCCCCCcceEEeccCCccceeecCCCCcEEEEecCCCcc
Confidence 2222 3356677777777777888999999999999955699999776444
No 69
>PF06977 SdiA-regulated: SdiA-regulated; InterPro: IPR009722 This entry represents a conserved region approximately 100 residues long within a number of hypothetical bacterial proteins that may be regulated by SdiA, a member of the LuxR family of transcriptional regulators []. Some proteins contain the IPR001258 from INTERPRO repeat.; PDB: 3QQZ_A.
Probab=98.36 E-value=0.00035 Score=61.39 Aligned_cols=196 Identities=15% Similarity=0.150 Sum_probs=106.6
Q ss_pred CCcccCeEECCC-CCEEEEeCCC-cEEEEcCCC--eEEEcC-CcCCcccEEEccCCcEEEEeCCCCCCCccccccccccC
Q 018474 93 SQSLLGLTTTKD-GGVILCDNEK-GLLKVTEEG--VEAIVP-DASFTNDVIAASDGTLYFTVASTKYTPTDFYKDMAEGK 167 (355)
Q Consensus 93 ~~p~~gl~~d~~-g~L~v~~~~~-gl~~~~~~g--~~~~~~-~~~~~~~l~~d~dG~ly~~d~~~~~~~~~~~~~~~~~~ 167 (355)
..+. ||+++++ ++||...... .|+.++.+| ++.+.- ....+.+|+...+|.+.+++..
T Consensus 22 ~e~S-GLTy~pd~~tLfaV~d~~~~i~els~~G~vlr~i~l~g~~D~EgI~y~g~~~~vl~~Er---------------- 84 (248)
T PF06977_consen 22 DELS-GLTYNPDTGTLFAVQDEPGEIYELSLDGKVLRRIPLDGFGDYEGITYLGNGRYVLSEER---------------- 84 (248)
T ss_dssp S-EE-EEEEETTTTEEEEEETTTTEEEEEETT--EEEEEE-SS-SSEEEEEE-STTEEEEEETT----------------
T ss_pred CCcc-ccEEcCCCCeEEEEECCCCEEEEEcCCCCEEEEEeCCCCCCceeEEEECCCEEEEEEcC----------------
Confidence 3477 9999976 6688877654 488888777 555433 2367888999888888887644
Q ss_pred CCCeEEEEeC--CCCeE-----EEeecc-----ccccccEEEeCCCCEEEEEeCC-CCeEEEEEe--CCCCCccee--Ee
Q 018474 168 PYGQLRKYDP--KLKET-----TVLHEG-----FYFANGIALSKNEDFVVVCESW-KFRCRRYWL--KGDRAGILD--AF 230 (355)
Q Consensus 168 ~~g~l~~~dp--~~~~~-----~~~~~~-----~~~pngi~~~~dg~~l~v~~~~-~~~i~~~~~--~~~~~~~~~--~~ 230 (355)
.+.++.++. .+... +.+.-+ -..-.|+|+++.++.+|++... ..+|+.++. .+....... .+
T Consensus 85 -~~~L~~~~~~~~~~~~~~~~~~~~~l~~~~~~N~G~EGla~D~~~~~L~v~kE~~P~~l~~~~~~~~~~~~~~~~~~~~ 163 (248)
T PF06977_consen 85 -DQRLYIFTIDDDTTSLDRADVQKISLGFPNKGNKGFEGLAYDPKTNRLFVAKERKPKRLYEVNGFPGGFDLFVSDDQDL 163 (248)
T ss_dssp -TTEEEEEEE----TT--EEEEEEEE---S---SS--EEEEEETTTTEEEEEEESSSEEEEEEESTT-SS--EEEE-HHH
T ss_pred -CCcEEEEEEeccccccchhhceEEecccccCCCcceEEEEEcCCCCEEEEEeCCCChhhEEEccccCccceeecccccc
Confidence 334544432 33222 111111 1224699999998877777543 335655553 111110000 00
Q ss_pred c-c-cCCCCcCceEECCC-CCEEEEeecCCchhhHhhhcchhHHHHHHhccchhhcccCCCCCCceEEEEEeCCCCeEEE
Q 018474 231 I-E-NLPGGPDNINLAPD-GSFWIGLIKMNQTGVRAIQKCREKWELLDAYPGLISLLLPMGSDAGARVVKVDGNDGKIIR 307 (355)
Q Consensus 231 ~-~-~~~g~p~~i~~d~~-G~lwv~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~g~~~~ 307 (355)
. . ..-.-+.++.+|+. |++||=+... ..++++|. +|+...
T Consensus 164 ~~~~~~~~d~S~l~~~p~t~~lliLS~es------------------------------------~~l~~~d~-~G~~~~ 206 (248)
T PF06977_consen 164 DDDKLFVRDLSGLSYDPRTGHLLILSDES------------------------------------RLLLELDR-QGRVVS 206 (248)
T ss_dssp H-HT--SS---EEEEETTTTEEEEEETTT------------------------------------TEEEEE-T-T--EEE
T ss_pred ccccceeccccceEEcCCCCeEEEEECCC------------------------------------CeEEEECC-CCCEEE
Confidence 0 0 01123677887765 6788876542 37999999 999888
Q ss_pred EEECCCC-----CcccceeEEEEeC-CEEEEeecCCCeEEEee
Q 018474 308 DFNDPDA-----TYISFVTSAAEFD-GNLYLASLQSNFIGILP 344 (355)
Q Consensus 308 ~~~~~~g-----~~~~~~~~~~~~~-g~L~v~~~~~~~i~~~~ 344 (355)
.+.-..| ..+...-+++.++ |+|||.+= .|..++|+
T Consensus 207 ~~~L~~g~~gl~~~~~QpEGIa~d~~G~LYIvsE-pNlfy~f~ 248 (248)
T PF06977_consen 207 SLSLDRGFHGLSKDIPQPEGIAFDPDGNLYIVSE-PNLFYRFE 248 (248)
T ss_dssp EEE-STTGGG-SS---SEEEEEE-TT--EEEEET-TTEEEEEE
T ss_pred EEEeCCcccCcccccCCccEEEECCCCCEEEEcC-CceEEEeC
Confidence 8876554 2245677788764 99999984 88888874
No 70
>TIGR03300 assembly_YfgL outer membrane assembly lipoprotein YfgL. Members of this protein family are YfgL, a lipoprotein component of a complex that acts protein insertion into the bacterial outer membrane. Other members of this complex are NlpB, YfiO, and YaeT. This protein contains multiple copies of a repeat that, in other contexts, are associated with binding of the coenzyme PQQ.
Probab=98.35 E-value=0.00032 Score=66.11 Aligned_cols=128 Identities=9% Similarity=0.028 Sum_probs=73.7
Q ss_pred CCCCeEEEEeCCCCeEEEeeccccccccEEEeCCCCEEEEEeCCCCeEEEEEeCCCC-CcceeEecccCCCCcCceEECC
Q 018474 167 KPYGQLRKYDPKLKETTVLHEGFYFANGIALSKNEDFVVVCESWKFRCRRYWLKGDR-AGILDAFIENLPGGPDNINLAP 245 (355)
Q Consensus 167 ~~~g~l~~~dp~~~~~~~~~~~~~~pngi~~~~dg~~l~v~~~~~~~i~~~~~~~~~-~~~~~~~~~~~~g~p~~i~~d~ 245 (355)
...+.++.+|+++++...... .......++ ++..+|+.. ..+.|++++.+..+ ..+.+.+. ........+ .
T Consensus 248 ~~~g~l~a~d~~tG~~~W~~~-~~~~~~p~~--~~~~vyv~~-~~G~l~~~d~~tG~~~W~~~~~~---~~~~ssp~i-~ 319 (377)
T TIGR03300 248 SYQGRVAALDLRSGRVLWKRD-ASSYQGPAV--DDNRLYVTD-ADGVVVALDRRSGSELWKNDELK---YRQLTAPAV-V 319 (377)
T ss_pred EcCCEEEEEECCCCcEEEeec-cCCccCceE--eCCEEEEEC-CCCeEEEEECCCCcEEEcccccc---CCccccCEE-E
Confidence 345789999998887654332 212222233 445688875 46789999985432 11111110 001111223 2
Q ss_pred CCCEEEEeecCCchhhHhhhcchhHHHHHHhccchhhcccCCCCCCceEEEEEeCCCCeEEEEEECCCCCcccceeEEEE
Q 018474 246 DGSFWIGLIKMNQTGVRAIQKCREKWELLDAYPGLISLLLPMGSDAGARVVKVDGNDGKIIRDFNDPDATYISFVTSAAE 325 (355)
Q Consensus 246 ~G~lwv~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~g~~~~~~~~~~g~~~~~~~~~~~ 325 (355)
++++++++.. +.++.+|+++|+.+..+....+. ..+.-+.
T Consensus 320 g~~l~~~~~~-------------------------------------G~l~~~d~~tG~~~~~~~~~~~~---~~~sp~~ 359 (377)
T TIGR03300 320 GGYLVVGDFE-------------------------------------GYLHWLSREDGSFVARLKTDGSG---IASPPVV 359 (377)
T ss_pred CCEEEEEeCC-------------------------------------CEEEEEECCCCCEEEEEEcCCCc---cccCCEE
Confidence 4678887654 46889998789988888654432 2223345
Q ss_pred eCCEEEEeecCCCeEEEe
Q 018474 326 FDGNLYLASLQSNFIGIL 343 (355)
Q Consensus 326 ~~g~L~v~~~~~~~i~~~ 343 (355)
.+++||+++. .+.|..+
T Consensus 360 ~~~~l~v~~~-dG~l~~~ 376 (377)
T TIGR03300 360 VGDGLLVQTR-DGDLYAF 376 (377)
T ss_pred ECCEEEEEeC-CceEEEe
Confidence 5688999987 5555544
No 71
>KOG0279 consensus G protein beta subunit-like protein [Signal transduction mechanisms]
Probab=98.34 E-value=0.0014 Score=56.99 Aligned_cols=224 Identities=19% Similarity=0.226 Sum_probs=142.8
Q ss_pred CCeEEEEecCCEEEEEEcCC-----CeeEEeecc-CCCcccCeEECCCCCEEEEeCCCcEEEEc--CCC--eEEEcCCcC
Q 018474 63 KGALYTATRDGWVKYFILHN-----ETLVNWKHI-DSQSLLGLTTTKDGGVILCDNEKGLLKVT--EEG--VEAIVPDAS 132 (355)
Q Consensus 63 ~g~l~~~~~~g~i~~~~~~~-----g~~~~~~~~-~~~p~~gl~~d~~g~L~v~~~~~gl~~~~--~~g--~~~~~~~~~ 132 (355)
-+.++.++.|..+..++... |...+-.+. ...+. .++..++|+..+.-..++..++- .+| .+++.....
T Consensus 28 ~~~l~sasrDk~ii~W~L~~dd~~~G~~~r~~~GHsH~v~-dv~~s~dg~~alS~swD~~lrlWDl~~g~~t~~f~GH~~ 106 (315)
T KOG0279|consen 28 SDILVSASRDKTIIVWKLTSDDIKYGVPVRRLTGHSHFVS-DVVLSSDGNFALSASWDGTLRLWDLATGESTRRFVGHTK 106 (315)
T ss_pred CceEEEcccceEEEEEEeccCccccCceeeeeeccceEec-ceEEccCCceEEeccccceEEEEEecCCcEEEEEEecCC
Confidence 34556667788787776532 222221121 23456 78888999988877667766664 355 455655557
Q ss_pred CcccEEEccCCcEEEEeCCCCCCCccccccccccCCCCeEEEEeCCCCeEEEeecc--ccccccEEEeCCC-CEEEEEeC
Q 018474 133 FTNDVIAASDGTLYFTVASTKYTPTDFYKDMAEGKPYGQLRKYDPKLKETTVLHEG--FYFANGIALSKNE-DFVVVCES 209 (355)
Q Consensus 133 ~~~~l~~d~dG~ly~~d~~~~~~~~~~~~~~~~~~~~g~l~~~dp~~~~~~~~~~~--~~~pngi~~~~dg-~~l~v~~~ 209 (355)
.+-++++++|.+-.++.+. ...+..||..++....+..+ -..-+.++|+|.. +..++...
T Consensus 107 dVlsva~s~dn~qivSGSr-----------------DkTiklwnt~g~ck~t~~~~~~~~WVscvrfsP~~~~p~Ivs~s 169 (315)
T KOG0279|consen 107 DVLSVAFSTDNRQIVSGSR-----------------DKTIKLWNTLGVCKYTIHEDSHREWVSCVRFSPNESNPIIVSAS 169 (315)
T ss_pred ceEEEEecCCCceeecCCC-----------------cceeeeeeecccEEEEEecCCCcCcEEEEEEcCCCCCcEEEEcc
Confidence 7888999999876676544 33566666655544333333 2335678899986 44555555
Q ss_pred CCCeEEEEEeCCCCCcceeEecccCCCCcCceEECCCCCEEEEeecCCchhhHhhhcchhHHHHHHhccchhhcccCCCC
Q 018474 210 WKFRCRRYWLKGDRAGILDAFIENLPGGPDNINLAPDGSFWIGLIKMNQTGVRAIQKCREKWELLDAYPGLISLLLPMGS 289 (355)
Q Consensus 210 ~~~~i~~~~~~~~~~~~~~~~~~~~~g~p~~i~~d~~G~lwv~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 289 (355)
..+.|..+++++-+. ...+. +..++-+-+.+++||.+-.+...
T Consensus 170 ~DktvKvWnl~~~~l--~~~~~-gh~~~v~t~~vSpDGslcasGgk---------------------------------- 212 (315)
T KOG0279|consen 170 WDKTVKVWNLRNCQL--RTTFI-GHSGYVNTVTVSPDGSLCASGGK---------------------------------- 212 (315)
T ss_pred CCceEEEEccCCcch--hhccc-cccccEEEEEECCCCCEEecCCC----------------------------------
Confidence 566777777765332 22333 34455666889999988776433
Q ss_pred CCceEEEEEeCCCCeEEEEEECCCCCcccceeEEEEeCCEEEEeecCCCeEEEeeCCCC
Q 018474 290 DAGARVVKVDGNDGKIIRDFNDPDATYISFVTSAAEFDGNLYLASLQSNFIGILPLDGP 348 (355)
Q Consensus 290 ~~~~~v~~~~~~~g~~~~~~~~~~g~~~~~~~~~~~~~g~L~v~~~~~~~i~~~~~~~~ 348 (355)
.+.+...|-.+++.++.+.- +..+.++++..++.|+.-.-...|...++.+.
T Consensus 213 --dg~~~LwdL~~~k~lysl~a-----~~~v~sl~fspnrywL~~at~~sIkIwdl~~~ 264 (315)
T KOG0279|consen 213 --DGEAMLWDLNEGKNLYSLEA-----FDIVNSLCFSPNRYWLCAATATSIKIWDLESK 264 (315)
T ss_pred --CceEEEEEccCCceeEeccC-----CCeEeeEEecCCceeEeeccCCceEEEeccch
Confidence 13455555546676665533 34678899999999999888888988887654
No 72
>TIGR02658 TTQ_MADH_Hv methylamine dehydrogenase heavy chain. This family consists of the heavy chain of methylamine dehydrogenase light chain, a periplasmic enzyme. The enzyme contains a tryptophan tryptophylquinone (TTQ) prothetic group derived from two Trp residues in the light subunity. The enzyme forms a complex with the type I blue copper protein amicyanin and a cytochrome. Electron transfer procedes from TQQ to the copper and then to the heme group of the cytochrome.
Probab=98.33 E-value=0.00028 Score=65.18 Aligned_cols=108 Identities=17% Similarity=0.112 Sum_probs=74.8
Q ss_pred CCEEEEeCC-----CcEEEEcC-CC--eEEEcCCcCCcccEEEccCC-cEEEEeCCCCCCCccccccccccCCCCeEEEE
Q 018474 105 GGVILCDNE-----KGLLKVTE-EG--VEAIVPDASFTNDVIAASDG-TLYFTVASTKYTPTDFYKDMAEGKPYGQLRKY 175 (355)
Q Consensus 105 g~L~v~~~~-----~gl~~~~~-~g--~~~~~~~~~~~~~l~~d~dG-~ly~~d~~~~~~~~~~~~~~~~~~~~g~l~~~ 175 (355)
.++||.+.. +.++.+|. ++ +..+... ..|+++ +++|| .+|++.+... .+.-+.....|-.|
T Consensus 13 ~~v~V~d~~~~~~~~~v~ViD~~~~~v~g~i~~G-~~P~~~-~spDg~~lyva~~~~~--------R~~~G~~~d~V~v~ 82 (352)
T TIGR02658 13 RRVYVLDPGHFAATTQVYTIDGEAGRVLGMTDGG-FLPNPV-VASDGSFFAHASTVYS--------RIARGKRTDYVEVI 82 (352)
T ss_pred CEEEEECCcccccCceEEEEECCCCEEEEEEEcc-CCCcee-ECCCCCEEEEEecccc--------ccccCCCCCEEEEE
Confidence 457777654 45778873 44 4444433 578886 99998 7999976311 11223446689999
Q ss_pred eCCCCeEEEeec--------cccccccEEEeCCCCEEEEEeCC-CCeEEEEEeCCC
Q 018474 176 DPKLKETTVLHE--------GFYFANGIALSKNEDFVVVCESW-KFRCRRYWLKGD 222 (355)
Q Consensus 176 dp~~~~~~~~~~--------~~~~pngi~~~~dg~~l~v~~~~-~~~i~~~~~~~~ 222 (355)
|+++.+...-.. ....|+.+++++||+++|+++.. .+.|.++|+...
T Consensus 83 D~~t~~~~~~i~~p~~p~~~~~~~~~~~~ls~dgk~l~V~n~~p~~~V~VvD~~~~ 138 (352)
T TIGR02658 83 DPQTHLPIADIELPEGPRFLVGTYPWMTSLTPDNKTLLFYQFSPSPAVGVVDLEGK 138 (352)
T ss_pred ECccCcEEeEEccCCCchhhccCccceEEECCCCCEEEEecCCCCCEEEEEECCCC
Confidence 998887653222 13456799999999999999866 889999998643
No 73
>KOG1446 consensus Histone H3 (Lys4) methyltransferase complex and RNA cleavage factor II complex, subunit SWD2 [RNA processing and modification; Chromatin structure and dynamics; Posttranslational modification, protein turnover, chaperones]
Probab=98.29 E-value=0.00041 Score=61.10 Aligned_cols=157 Identities=11% Similarity=0.068 Sum_probs=106.3
Q ss_pred eEecCCCCCCCceEEEeeCCCeEEEEecCCEEEEEEcCCCeeEEeeccCCCcccCeEECCCCCEEEEeCCC-cEEEEc-C
Q 018474 44 TKLGEGCVNHPEDVSVVVSKGALYTATRDGWVKYFILHNETLVNWKHIDSQSLLGLTTTKDGGVILCDNEK-GLLKVT-E 121 (355)
Q Consensus 44 ~~~~~~~~~~p~~i~~d~~~g~l~~~~~~g~i~~~~~~~g~~~~~~~~~~~p~~gl~~d~~g~L~v~~~~~-gl~~~~-~ 121 (355)
-++..|.-..-.+|...|.++.+..++.|+.|+.+|.+..+-+.+....++| ..++|++|-++++..+. .|-.|| +
T Consensus 93 lRYF~GH~~~V~sL~~sP~~d~FlS~S~D~tvrLWDlR~~~cqg~l~~~~~p--i~AfDp~GLifA~~~~~~~IkLyD~R 170 (311)
T KOG1446|consen 93 LRYFPGHKKRVNSLSVSPKDDTFLSSSLDKTVRLWDLRVKKCQGLLNLSGRP--IAAFDPEGLIFALANGSELIKLYDLR 170 (311)
T ss_pred EEEcCCCCceEEEEEecCCCCeEEecccCCeEEeeEecCCCCceEEecCCCc--ceeECCCCcEEEEecCCCeEEEEEec
Confidence 3566677777889999977777777778999999998766555555555556 58999999988876654 455555 2
Q ss_pred ---CC-eEEEcCC---cCCcccEEEccCCc-EEEEeCCCCCCCccccccccccCCCCeEEEEeCCCCeEEEe----eccc
Q 018474 122 ---EG-VEAIVPD---ASFTNDVIAASDGT-LYFTVASTKYTPTDFYKDMAEGKPYGQLRKYDPKLKETTVL----HEGF 189 (355)
Q Consensus 122 ---~g-~~~~~~~---~~~~~~l~~d~dG~-ly~~d~~~~~~~~~~~~~~~~~~~~g~l~~~dp~~~~~~~~----~~~~ 189 (355)
.| .+.+... ....++|-+++||. |.+++.. +.++.+|.=+|.+..- ....
T Consensus 171 s~dkgPF~tf~i~~~~~~ew~~l~FS~dGK~iLlsT~~------------------s~~~~lDAf~G~~~~tfs~~~~~~ 232 (311)
T KOG1446|consen 171 SFDKGPFTTFSITDNDEAEWTDLEFSPDGKSILLSTNA------------------SFIYLLDAFDGTVKSTFSGYPNAG 232 (311)
T ss_pred ccCCCCceeEccCCCCccceeeeEEcCCCCEEEEEeCC------------------CcEEEEEccCCcEeeeEeeccCCC
Confidence 34 5554433 26788899999995 5565433 3455556545543221 2223
Q ss_pred cccccEEEeCCCCEEEEEeCCCCeEEEEEeCC
Q 018474 190 YFANGIALSKNEDFVVVCESWKFRCRRYWLKG 221 (355)
Q Consensus 190 ~~pngi~~~~dg~~l~v~~~~~~~i~~~~~~~ 221 (355)
..|-..+++||+++++.+ ...++|..|+++.
T Consensus 233 ~~~~~a~ftPds~Fvl~g-s~dg~i~vw~~~t 263 (311)
T KOG1446|consen 233 NLPLSATFTPDSKFVLSG-SDDGTIHVWNLET 263 (311)
T ss_pred CcceeEEECCCCcEEEEe-cCCCcEEEEEcCC
Confidence 345577899999966554 5678999999854
No 74
>KOG0266 consensus WD40 repeat-containing protein [General function prediction only]
Probab=98.29 E-value=0.00086 Score=64.90 Aligned_cols=183 Identities=17% Similarity=0.266 Sum_probs=111.8
Q ss_pred CceEEEeeCCCeEEEEecCCEEEEEEcCCCe--eEEeec-cCCCcccCeEECCCCCEEEEeCCCcEEEE-c-C-CC--eE
Q 018474 54 PEDVSVVVSKGALYTATRDGWVKYFILHNET--LVNWKH-IDSQSLLGLTTTKDGGVILCDNEKGLLKV-T-E-EG--VE 125 (355)
Q Consensus 54 p~~i~~d~~~g~l~~~~~~g~i~~~~~~~g~--~~~~~~-~~~~p~~gl~~d~~g~L~v~~~~~gl~~~-~-~-~g--~~ 125 (355)
-.++.+.+++..+..++.++.+..++..+++ ...-.. ....+. .+++.++|+..++...+..+++ + + .+ ++
T Consensus 162 v~~~~fs~~g~~l~~~~~~~~i~~~~~~~~~~~~~~~l~~h~~~v~-~~~fs~d~~~l~s~s~D~tiriwd~~~~~~~~~ 240 (456)
T KOG0266|consen 162 VTCVDFSPDGRALAAASSDGLIRIWKLEGIKSNLLRELSGHTRGVS-DVAFSPDGSYLLSGSDDKTLRIWDLKDDGRNLK 240 (456)
T ss_pred eEEEEEcCCCCeEEEccCCCcEEEeecccccchhhcccccccccee-eeEECCCCcEEEEecCCceEEEeeccCCCeEEE
Confidence 3345556556655556667766666663443 111111 112366 8899999987776666555544 3 3 34 66
Q ss_pred EEcCCcCCcccEEEccCCcEEEEeCCCCCCCccccccccccCCCCeEEEEeCCCCeEEEeecc-ccccccEEEeCCCCEE
Q 018474 126 AIVPDASFTNDVIAASDGTLYFTVASTKYTPTDFYKDMAEGKPYGQLRKYDPKLKETTVLHEG-FYFANGIALSKNEDFV 204 (355)
Q Consensus 126 ~~~~~~~~~~~l~~d~dG~ly~~d~~~~~~~~~~~~~~~~~~~~g~l~~~dp~~~~~~~~~~~-~~~pngi~~~~dg~~l 204 (355)
++......++++++.++|++.++.+. .+.+..||.++++....... -..-.++++++|++.+
T Consensus 241 ~l~gH~~~v~~~~f~p~g~~i~Sgs~-----------------D~tvriWd~~~~~~~~~l~~hs~~is~~~f~~d~~~l 303 (456)
T KOG0266|consen 241 TLKGHSTYVTSVAFSPDGNLLVSGSD-----------------DGTVRIWDVRTGECVRKLKGHSDGISGLAFSPDGNLL 303 (456)
T ss_pred EecCCCCceEEEEecCCCCEEEEecC-----------------CCcEEEEeccCCeEEEeeeccCCceEEEEECCCCCEE
Confidence 66666688999999999988887554 56788889887765444333 3345788999999965
Q ss_pred EEEeCCCCeEEEEEeCCCCCcceeEeccc-CCCCcCceEECCCCCEEEEeec
Q 018474 205 VVCESWKFRCRRYWLKGDRAGILDAFIEN-LPGGPDNINLAPDGSFWIGLIK 255 (355)
Q Consensus 205 ~v~~~~~~~i~~~~~~~~~~~~~~~~~~~-~~g~p~~i~~d~~G~lwv~~~~ 255 (355)
+.+ +.++.|..||+.+....-.+.+... .+..-..+.++++|.+.+....
T Consensus 304 ~s~-s~d~~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~fsp~~~~ll~~~~ 354 (456)
T KOG0266|consen 304 VSA-SYDGTIRVWDLETGSKLCLKLLSGAENSAPVTSVQFSPNGKYLLSASL 354 (456)
T ss_pred EEc-CCCccEEEEECCCCceeeeecccCCCCCCceeEEEECCCCcEEEEecC
Confidence 555 6678888899865431101122211 1111245678888975554433
No 75
>TIGR02800 propeller_TolB tol-pal system beta propeller repeat protein TolB. The Tol-PAL system is required for bacterial outer membrane integrity. E. coli TolB is involved in the tonB-independent uptake of group A colicins (colicins A, E1, E2, E3 and K), and is necessary for the colicins to reach their respective targets after initial binding to the bacteria. It is also involved in uptake of filamentous DNA. Study of its structure suggest that the TolB protein might be involved in the recycling of peptidoglycan or in its covalent linking with lipoproteins. The Tol-Pal system is also implicated in pathogenesis of E. coli, Haemophilus ducreyi, Salmonella enterica and Vibrio cholerae, but the mechanism(s) is unclear.
Probab=98.29 E-value=0.0014 Score=62.54 Aligned_cols=161 Identities=12% Similarity=0.053 Sum_probs=92.0
Q ss_pred EEEEEEcCCCeeEEeeccCCCcccCeEECCCCC-EEEEeCC---CcEEEEc-CCC-eEEEcCCcCCcccEEEccCC-cEE
Q 018474 74 WVKYFILHNETLVNWKHIDSQSLLGLTTTKDGG-VILCDNE---KGLLKVT-EEG-VEAIVPDASFTNDVIAASDG-TLY 146 (355)
Q Consensus 74 ~i~~~~~~~g~~~~~~~~~~~p~~gl~~d~~g~-L~v~~~~---~gl~~~~-~~g-~~~~~~~~~~~~~l~~d~dG-~ly 146 (355)
.|+..|...+..+.+........ ..++.++|+ |+++... ..++.++ .+| .+.+.........+.+++|| .|+
T Consensus 171 ~l~~~d~~g~~~~~l~~~~~~~~-~p~~Spdg~~la~~~~~~~~~~i~v~d~~~g~~~~~~~~~~~~~~~~~spDg~~l~ 249 (417)
T TIGR02800 171 ELQVADYDGANPQTITRSREPIL-SPAWSPDGQKLAYVSFESGKPEIYVQDLATGQREKVASFPGMNGAPAFSPDGSKLA 249 (417)
T ss_pred eEEEEcCCCCCCEEeecCCCcee-cccCCCCCCEEEEEEcCCCCcEEEEEECCCCCEEEeecCCCCccceEECCCCCEEE
Confidence 57777764444444443333344 667788887 4444332 2477777 456 55444322345567899998 477
Q ss_pred EEeCCCCCCCccccccccccCCCCeEEEEeCCCCeEEEeeccccccccEEEeCCCCEEEEEeCC--CCeEEEEEeCCCCC
Q 018474 147 FTVASTKYTPTDFYKDMAEGKPYGQLRKYDPKLKETTVLHEGFYFANGIALSKNEDFVVVCESW--KFRCRRYWLKGDRA 224 (355)
Q Consensus 147 ~~d~~~~~~~~~~~~~~~~~~~~g~l~~~dp~~~~~~~~~~~~~~pngi~~~~dg~~l~v~~~~--~~~i~~~~~~~~~~ 224 (355)
++... .....+|.+|..+++.+.+..........++++||+.++++... ...|+.+++++...
T Consensus 250 ~~~~~---------------~~~~~i~~~d~~~~~~~~l~~~~~~~~~~~~s~dg~~l~~~s~~~g~~~iy~~d~~~~~~ 314 (417)
T TIGR02800 250 VSLSK---------------DGNPDIYVMDLDGKQLTRLTNGPGIDTEPSWSPDGKSIAFTSDRGGSPQIYMMDADGGEV 314 (417)
T ss_pred EEECC---------------CCCccEEEEECCCCCEEECCCCCCCCCCEEECCCCCEEEEEECCCCCceEEEEECCCCCE
Confidence 66432 11236899998888766554332223356889999988766532 23688888764322
Q ss_pred cceeEecccCCCCcCceEECCCCCEEEEee
Q 018474 225 GILDAFIENLPGGPDNINLAPDGSFWIGLI 254 (355)
Q Consensus 225 ~~~~~~~~~~~g~p~~i~~d~~G~lwv~~~ 254 (355)
+.+. ..........++++|++.+.+.
T Consensus 315 ---~~l~-~~~~~~~~~~~spdg~~i~~~~ 340 (417)
T TIGR02800 315 ---RRLT-FRGGYNASPSWSPDGDLIAFVH 340 (417)
T ss_pred ---EEee-cCCCCccCeEECCCCCEEEEEE
Confidence 2221 1112234567788887554443
No 76
>PRK04043 tolB translocation protein TolB; Provisional
Probab=98.29 E-value=0.0013 Score=62.82 Aligned_cols=156 Identities=13% Similarity=0.024 Sum_probs=89.9
Q ss_pred EEEEEEcCCCe-eEEeeccCCCcccCeEECCCCC--EEEEeCC---CcEEEEcC-CC-eEEEcCCcCCcccEEEccCC-c
Q 018474 74 WVKYFILHNET-LVNWKHIDSQSLLGLTTTKDGG--VILCDNE---KGLLKVTE-EG-VEAIVPDASFTNDVIAASDG-T 144 (355)
Q Consensus 74 ~i~~~~~~~g~-~~~~~~~~~~p~~gl~~d~~g~--L~v~~~~---~gl~~~~~-~g-~~~~~~~~~~~~~l~~d~dG-~ 144 (355)
+|+..|. +|. .+.+... +... .-.+.++|+ +|+.... ..|+.++. +| .+.+...........++||| .
T Consensus 170 ~l~~~d~-dg~~~~~~~~~-~~~~-~p~wSpDG~~~i~y~s~~~~~~~Iyv~dl~tg~~~~lt~~~g~~~~~~~SPDG~~ 246 (419)
T PRK04043 170 NIVLADY-TLTYQKVIVKG-GLNI-FPKWANKEQTAFYYTSYGERKPTLYKYNLYTGKKEKIASSQGMLVVSDVSKDGSK 246 (419)
T ss_pred eEEEECC-CCCceeEEccC-CCeE-eEEECCCCCcEEEEEEccCCCCEEEEEECCCCcEEEEecCCCcEEeeEECCCCCE
Confidence 5566565 333 3333332 3223 556778885 5655443 24888884 66 66665432223345688999 5
Q ss_pred EEEEeCCCCCCCccccccccccCCCCeEEEEeCCCCeEEEeeccccccccEEEeCCCCEEEEEeCC--CCeEEEEEeCCC
Q 018474 145 LYFTVASTKYTPTDFYKDMAEGKPYGQLRKYDPKLKETTVLHEGFYFANGIALSKNEDFVVVCESW--KFRCRRYWLKGD 222 (355)
Q Consensus 145 ly~~d~~~~~~~~~~~~~~~~~~~~g~l~~~dp~~~~~~~~~~~~~~pngi~~~~dg~~l~v~~~~--~~~i~~~~~~~~ 222 (355)
|.++... .....+|.+|.++++.+.+......-..-.++|||+.++++... ...|+++++++.
T Consensus 247 la~~~~~---------------~g~~~Iy~~dl~~g~~~~LT~~~~~d~~p~~SPDG~~I~F~Sdr~g~~~Iy~~dl~~g 311 (419)
T PRK04043 247 LLLTMAP---------------KGQPDIYLYDTNTKTLTQITNYPGIDVNGNFVEDDKRIVFVSDRLGYPNIFMKKLNSG 311 (419)
T ss_pred EEEEEcc---------------CCCcEEEEEECCCCcEEEcccCCCccCccEECCCCCEEEEEECCCCCceEEEEECCCC
Confidence 7666432 11357999998888877664432222234799999988887643 236888888654
Q ss_pred CCcceeEecccCCCCcCceEECCCCCEEEEe
Q 018474 223 RAGILDAFIENLPGGPDNINLAPDGSFWIGL 253 (355)
Q Consensus 223 ~~~~~~~~~~~~~g~p~~i~~d~~G~lwv~~ 253 (355)
.. +.+... +. .+...+++|+..+-.
T Consensus 312 ~~---~rlt~~--g~-~~~~~SPDG~~Ia~~ 336 (419)
T PRK04043 312 SV---EQVVFH--GK-NNSSVSTYKNYIVYS 336 (419)
T ss_pred Ce---EeCccC--CC-cCceECCCCCEEEEE
Confidence 32 112111 11 234678888754444
No 77
>PF13360 PQQ_2: PQQ-like domain; PDB: 3HXJ_B 1YIQ_A 1KV9_A 3Q54_A 2YH3_A 3PRW_A 3P1L_A 3Q7M_A 3Q7O_A 3Q7N_A ....
Probab=98.26 E-value=0.00087 Score=58.55 Aligned_cols=210 Identities=16% Similarity=0.128 Sum_probs=116.0
Q ss_pred CCEEEEEEcCCCeeEEeeccC---CCcccCeEECCCCCEEEEeCCCcEEEEcC-CC-eE-EEcCCcCCcccEEEccCCcE
Q 018474 72 DGWVKYFILHNETLVNWKHID---SQSLLGLTTTKDGGVILCDNEKGLLKVTE-EG-VE-AIVPDASFTNDVIAASDGTL 145 (355)
Q Consensus 72 ~g~i~~~~~~~g~~~~~~~~~---~~p~~gl~~d~~g~L~v~~~~~gl~~~~~-~g-~~-~~~~~~~~~~~l~~d~dG~l 145 (355)
+|.|..+|+.+|+..--.... ..+. ......++++|+++..+.|+.++. +| .. ..... ..+.......++.+
T Consensus 2 ~g~l~~~d~~tG~~~W~~~~~~~~~~~~-~~~~~~~~~v~~~~~~~~l~~~d~~tG~~~W~~~~~-~~~~~~~~~~~~~v 79 (238)
T PF13360_consen 2 DGTLSALDPRTGKELWSYDLGPGIGGPV-ATAVPDGGRVYVASGDGNLYALDAKTGKVLWRFDLP-GPISGAPVVDGGRV 79 (238)
T ss_dssp TSEEEEEETTTTEEEEEEECSSSCSSEE-ETEEEETTEEEEEETTSEEEEEETTTSEEEEEEECS-SCGGSGEEEETTEE
T ss_pred CCEEEEEECCCCCEEEEEECCCCCCCcc-ceEEEeCCEEEEEcCCCEEEEEECCCCCEEEEeecc-ccccceeeeccccc
Confidence 567888888788643211111 1111 124445889999987788999994 88 32 22211 11111123456778
Q ss_pred EEEeCCCCCCCccccccccccCCCCeEEEEeCCCCeEEEee-ccc----cccccEEEeCCCCEEEEEeCCCCeEEEEEeC
Q 018474 146 YFTVASTKYTPTDFYKDMAEGKPYGQLRKYDPKLKETTVLH-EGF----YFANGIALSKNEDFVVVCESWKFRCRRYWLK 220 (355)
Q Consensus 146 y~~d~~~~~~~~~~~~~~~~~~~~g~l~~~dp~~~~~~~~~-~~~----~~pngi~~~~dg~~l~v~~~~~~~i~~~~~~ 220 (355)
|+... .+.++.+|..+|+..... ... ..-.......+++.+|+... .+.|+.++++
T Consensus 80 ~v~~~------------------~~~l~~~d~~tG~~~W~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~g~l~~~d~~ 140 (238)
T PF13360_consen 80 YVGTS------------------DGSLYALDAKTGKVLWSIYLTSSPPAGVRSSSSPAVDGDRLYVGTS-SGKLVALDPK 140 (238)
T ss_dssp EEEET------------------TSEEEEEETTTSCEEEEEEE-SSCTCSTB--SEEEEETTEEEEEET-CSEEEEEETT
T ss_pred ccccc------------------eeeeEecccCCcceeeeeccccccccccccccCceEecCEEEEEec-cCcEEEEecC
Confidence 88753 347999998888765542 111 11112233334666777764 6789999975
Q ss_pred CCCC-cceeEecccCCC-C--------cCceEECCCCCEEEEeecCCchhhHhhhcchhHHHHHHhccchhhcccCCCCC
Q 018474 221 GDRA-GILDAFIENLPG-G--------PDNINLAPDGSFWIGLIKMNQTGVRAIQKCREKWELLDAYPGLISLLLPMGSD 290 (355)
Q Consensus 221 ~~~~-~~~~~~~~~~~g-~--------p~~i~~d~~G~lwv~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 290 (355)
..+. .+.+ . ...++ . .....++ +|.++++...
T Consensus 141 tG~~~w~~~-~-~~~~~~~~~~~~~~~~~~~~~~-~~~v~~~~~~----------------------------------- 182 (238)
T PF13360_consen 141 TGKLLWKYP-V-GEPRGSSPISSFSDINGSPVIS-DGRVYVSSGD----------------------------------- 182 (238)
T ss_dssp TTEEEEEEE-S-STT-SS--EEEETTEEEEEECC-TTEEEEECCT-----------------------------------
T ss_pred CCcEEEEee-c-CCCCCCcceeeecccccceEEE-CCEEEEEcCC-----------------------------------
Confidence 4322 1111 1 11010 0 0112233 4578887755
Q ss_pred CceEEEEEeCCCCeEEEEEECCCCCcccceeEEEEeCCEEEEeecCCCeEEEeeCCCC
Q 018474 291 AGARVVKVDGNDGKIIRDFNDPDATYISFVTSAAEFDGNLYLASLQSNFIGILPLDGP 348 (355)
Q Consensus 291 ~~~~v~~~~~~~g~~~~~~~~~~g~~~~~~~~~~~~~g~L~v~~~~~~~i~~~~~~~~ 348 (355)
+.++.+|.++|+.. +..+.+. ........++.||+++ ..+.|..+++.+-
T Consensus 183 --g~~~~~d~~tg~~~--w~~~~~~---~~~~~~~~~~~l~~~~-~~~~l~~~d~~tG 232 (238)
T PF13360_consen 183 --GRVVAVDLATGEKL--WSKPISG---IYSLPSVDGGTLYVTS-SDGRLYALDLKTG 232 (238)
T ss_dssp --SSEEEEETTTTEEE--EEECSS----ECECEECCCTEEEEEE-TTTEEEEEETTTT
T ss_pred --CeEEEEECCCCCEE--EEecCCC---ccCCceeeCCEEEEEe-CCCEEEEEECCCC
Confidence 22677787677744 3332211 1222456779999999 7899999988763
No 78
>PF13360 PQQ_2: PQQ-like domain; PDB: 3HXJ_B 1YIQ_A 1KV9_A 3Q54_A 2YH3_A 3PRW_A 3P1L_A 3Q7M_A 3Q7O_A 3Q7N_A ....
Probab=98.18 E-value=0.0022 Score=56.02 Aligned_cols=168 Identities=15% Similarity=0.131 Sum_probs=93.9
Q ss_pred EEeeCCCeEEEEecCCEEEEEEcCCCeeEEeeccCCCcccCeEECCCCCEEEEeCCCcEEEEc-CCC-eEEE--cCC--c
Q 018474 58 SVVVSKGALYTATRDGWVKYFILHNETLVNWKHIDSQSLLGLTTTKDGGVILCDNEKGLLKVT-EEG-VEAI--VPD--A 131 (355)
Q Consensus 58 ~~d~~~g~l~~~~~~g~i~~~~~~~g~~~~~~~~~~~p~~gl~~d~~g~L~v~~~~~gl~~~~-~~g-~~~~--~~~--~ 131 (355)
... .++.+|+++.++.|+.+|..+|+..--........ ....-.++.+|++...+.++.++ ++| +..- ... .
T Consensus 32 ~~~-~~~~v~~~~~~~~l~~~d~~tG~~~W~~~~~~~~~-~~~~~~~~~v~v~~~~~~l~~~d~~tG~~~W~~~~~~~~~ 109 (238)
T PF13360_consen 32 AVP-DGGRVYVASGDGNLYALDAKTGKVLWRFDLPGPIS-GAPVVDGGRVYVGTSDGSLYALDAKTGKVLWSIYLTSSPP 109 (238)
T ss_dssp EEE-ETTEEEEEETTSEEEEEETTTSEEEEEEECSSCGG-SGEEEETTEEEEEETTSEEEEEETTTSCEEEEEEE-SSCT
T ss_pred EEE-eCCEEEEEcCCCEEEEEECCCCCEEEEeecccccc-ceeeecccccccccceeeeEecccCCcceeeeeccccccc
Confidence 443 58899999999999999998997543222223333 33233578899998666799999 688 3221 111 1
Q ss_pred ---CCcccEEEccCCcEEEEeCCCCCCCccccccccccCCCCeEEEEeCCCCeEEEeeccccccc------------cEE
Q 018474 132 ---SFTNDVIAASDGTLYFTVASTKYTPTDFYKDMAEGKPYGQLRKYDPKLKETTVLHEGFYFAN------------GIA 196 (355)
Q Consensus 132 ---~~~~~l~~d~dG~ly~~d~~~~~~~~~~~~~~~~~~~~g~l~~~dp~~~~~~~~~~~~~~pn------------gi~ 196 (355)
.......++ ++.+|++.. .+.++.+|+++|+....... ..+. +-.
T Consensus 110 ~~~~~~~~~~~~-~~~~~~~~~------------------~g~l~~~d~~tG~~~w~~~~-~~~~~~~~~~~~~~~~~~~ 169 (238)
T PF13360_consen 110 AGVRSSSSPAVD-GDRLYVGTS------------------SGKLVALDPKTGKLLWKYPV-GEPRGSSPISSFSDINGSP 169 (238)
T ss_dssp CSTB--SEEEEE-TTEEEEEET------------------CSEEEEEETTTTEEEEEEES-STT-SS--EEEETTEEEEE
T ss_pred cccccccCceEe-cCEEEEEec------------------cCcEEEEecCCCcEEEEeec-CCCCCCcceeeecccccce
Confidence 112223333 446777643 45799999999987543322 2211 222
Q ss_pred EeCCCCEEEEEeCCCCeEEEEEeCCCCCcceeEecccCCCCcCceEECCCCCEEEEee
Q 018474 197 LSKNEDFVVVCESWKFRCRRYWLKGDRAGILDAFIENLPGGPDNINLAPDGSFWIGLI 254 (355)
Q Consensus 197 ~~~dg~~l~v~~~~~~~i~~~~~~~~~~~~~~~~~~~~~g~p~~i~~d~~G~lwv~~~ 254 (355)
+..++ .+|++.. .+++..++.+..+.. .+. . ...+.......++.+|+++.
T Consensus 170 ~~~~~-~v~~~~~-~g~~~~~d~~tg~~~-w~~---~-~~~~~~~~~~~~~~l~~~~~ 220 (238)
T PF13360_consen 170 VISDG-RVYVSSG-DGRVVAVDLATGEKL-WSK---P-ISGIYSLPSVDGGTLYVTSS 220 (238)
T ss_dssp ECCTT-EEEEECC-TSSEEEEETTTTEEE-EEE---C-SS-ECECEECCCTEEEEEET
T ss_pred EEECC-EEEEEcC-CCeEEEEECCCCCEE-EEe---c-CCCccCCceeeCCEEEEEeC
Confidence 32344 6888764 344666676543211 111 1 11123323345567888873
No 79
>PF05096 Glu_cyclase_2: Glutamine cyclotransferase; InterPro: IPR007788 This family of enzymes 2.3.2.5 from EC catalyse the cyclization of free L-glutamine and N-terminal glutaminyl residues in proteins to pyroglutamate (5-oxoproline) and pyroglutamyl residues respectively []. This family includes plant and bacterial enzymes and seems unrelated to the mammalian enzymes.; PDB: 3NOK_B 2FAW_A 2IWA_A 3NOM_A 3NOL_A 3MBR_X.
Probab=98.14 E-value=0.00078 Score=59.09 Aligned_cols=146 Identities=20% Similarity=0.210 Sum_probs=92.5
Q ss_pred CCCCceEEEeeCCCeEEEEec-CCEEEEEEcCCCee-EEeeccCCCcccCeEECCCCCEEEEeCCCcEEEEcCCC---eE
Q 018474 51 VNHPEDVSVVVSKGALYTATR-DGWVKYFILHNETL-VNWKHIDSQSLLGLTTTKDGGVILCDNEKGLLKVTEEG---VE 125 (355)
Q Consensus 51 ~~~p~~i~~d~~~g~l~~~~~-~g~i~~~~~~~g~~-~~~~~~~~~p~~gl~~d~~g~L~v~~~~~gl~~~~~~g---~~ 125 (355)
-.-.|+|+.. ++.+|.-+- ++..+.+|+++-+. ..+. -.+... ||+.| ..+||+++....|+.+|+.. .+
T Consensus 89 ~~FgEGit~~--~d~l~qLTWk~~~~f~yd~~tl~~~~~~~-y~~EGW-GLt~d-g~~Li~SDGS~~L~~~dP~~f~~~~ 163 (264)
T PF05096_consen 89 RYFGEGITIL--GDKLYQLTWKEGTGFVYDPNTLKKIGTFP-YPGEGW-GLTSD-GKRLIMSDGSSRLYFLDPETFKEVR 163 (264)
T ss_dssp T--EEEEEEE--TTEEEEEESSSSEEEEEETTTTEEEEEEE--SSS---EEEEC-SSCEEEE-SSSEEEEE-TTT-SEEE
T ss_pred cccceeEEEE--CCEEEEEEecCCeEEEEccccceEEEEEe-cCCcce-EEEcC-CCEEEEECCccceEEECCcccceEE
Confidence 4567888887 667887664 78889999976543 3332 235677 89977 45899999888899999632 22
Q ss_pred EEc---CC--cCCcccEEEccCCcEEEEeCCCCCCCccccccccccCCCCeEEEEeCCCCeEEEeec--c----------
Q 018474 126 AIV---PD--ASFTNDVIAASDGTLYFTVASTKYTPTDFYKDMAEGKPYGQLRKYDPKLKETTVLHE--G---------- 188 (355)
Q Consensus 126 ~~~---~~--~~~~~~l~~d~dG~ly~~d~~~~~~~~~~~~~~~~~~~~g~l~~~dp~~~~~~~~~~--~---------- 188 (355)
.+. .. ....|.|-.- +|.||..... +..|.++||++|++....+ +
T Consensus 164 ~i~V~~~g~pv~~LNELE~i-~G~IyANVW~-----------------td~I~~Idp~tG~V~~~iDls~L~~~~~~~~~ 225 (264)
T PF05096_consen 164 TIQVTDNGRPVSNLNELEYI-NGKIYANVWQ-----------------TDRIVRIDPETGKVVGWIDLSGLRPEVGRDKS 225 (264)
T ss_dssp EEE-EETTEE---EEEEEEE-TTEEEEEETT-----------------SSEEEEEETTT-BEEEEEE-HHHHHHHTSTTS
T ss_pred EEEEEECCEECCCcEeEEEE-cCEEEEEeCC-----------------CCeEEEEeCCCCeEEEEEEhhHhhhccccccc
Confidence 221 11 2677887654 7889876543 4589999999999876531 1
Q ss_pred ----ccccccEEEeCCCCEEEEEeCCCCeEEEEEe
Q 018474 189 ----FYFANGIALSKNEDFVVVCESWKFRCRRYWL 219 (355)
Q Consensus 189 ----~~~pngi~~~~dg~~l~v~~~~~~~i~~~~~ 219 (355)
...-||||.+++.+.+|++.-.=..++++.+
T Consensus 226 ~~~~~dVLNGIAyd~~~~~l~vTGK~Wp~lyeV~l 260 (264)
T PF05096_consen 226 RQPDDDVLNGIAYDPETDRLFVTGKLWPKLYEVKL 260 (264)
T ss_dssp T--TTS-EEEEEEETTTTEEEEEETT-SEEEEEEE
T ss_pred ccccCCeeEeEeEeCCCCEEEEEeCCCCceEEEEE
Confidence 1246999999999999998643334554443
No 80
>COG3204 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=98.12 E-value=0.0027 Score=56.03 Aligned_cols=186 Identities=11% Similarity=0.097 Sum_probs=103.9
Q ss_pred CCCCceEEEeeCCCeEEEEec-CCEEEEEEcCCCeeEEeecc--CCCcccCeEECCCCCEEEEeCC-CcEE--EEcCCC-
Q 018474 51 VNHPEDVSVVVSKGALYTATR-DGWVKYFILHNETLVNWKHI--DSQSLLGLTTTKDGGVILCDNE-KGLL--KVTEEG- 123 (355)
Q Consensus 51 ~~~p~~i~~d~~~g~l~~~~~-~g~i~~~~~~~g~~~~~~~~--~~~p~~gl~~d~~g~L~v~~~~-~gl~--~~~~~g- 123 (355)
-..-.+++++|+.+.||..+. .-.|..++. +|++....+. -..|. +|..-.+|..-+++-. +.++ .+++++
T Consensus 85 ~~nvS~LTynp~~rtLFav~n~p~~iVElt~-~GdlirtiPL~g~~DpE-~Ieyig~n~fvi~dER~~~l~~~~vd~~t~ 162 (316)
T COG3204 85 TANVSSLTYNPDTRTLFAVTNKPAAIVELTK-EGDLIRTIPLTGFSDPE-TIEYIGGNQFVIVDERDRALYLFTVDADTT 162 (316)
T ss_pred cccccceeeCCCcceEEEecCCCceEEEEec-CCceEEEecccccCChh-HeEEecCCEEEEEehhcceEEEEEEcCCcc
Confidence 344788999988899997654 456777776 6665443322 23466 7766544444444422 2333 444433
Q ss_pred eEEEcC-C---------cCCcccEEEccC-CcEEEEeCCCCCCCccccccccccCCCCeEEEEeCCCCeEEEeec-----
Q 018474 124 VEAIVP-D---------ASFTNDVIAASD-GTLYFTVASTKYTPTDFYKDMAEGKPYGQLRKYDPKLKETTVLHE----- 187 (355)
Q Consensus 124 ~~~~~~-~---------~~~~~~l~~d~d-G~ly~~d~~~~~~~~~~~~~~~~~~~~g~l~~~dp~~~~~~~~~~----- 187 (355)
+..... . -..-.+++.|+. +++||+-... --++|.++...........
T Consensus 163 ~~~~~~~~i~L~~~~k~N~GfEGlA~d~~~~~l~~aKEr~----------------P~~I~~~~~~~~~l~~~~~~~~~~ 226 (316)
T COG3204 163 VISAKVQKIPLGTTNKKNKGFEGLAWDPVDHRLFVAKERN----------------PIGIFEVTQSPSSLSVHASLDPTA 226 (316)
T ss_pred EEeccceEEeccccCCCCcCceeeecCCCCceEEEEEccC----------------CcEEEEEecCCcccccccccCccc
Confidence 221111 1 145567999985 4899975431 1145555432211111110
Q ss_pred --c--ccccccEEEeCCCCEEEEEeCCCCeEEEEEeCCCCCcceeEecccCCC------CcCceEECCCCCEEEEeec
Q 018474 188 --G--FYFANGIALSKNEDFVVVCESWKFRCRRYWLKGDRAGILDAFIENLPG------GPDNINLAPDGSFWIGLIK 255 (355)
Q Consensus 188 --~--~~~pngi~~~~dg~~l~v~~~~~~~i~~~~~~~~~~~~~~~~~~~~~g------~p~~i~~d~~G~lwv~~~~ 255 (355)
+ +.--.|+.+++..++|+|-..-...|..++.+|.-.+... +..+..| .+.|++.|++|+|||....
T Consensus 227 ~~~~f~~DvSgl~~~~~~~~LLVLS~ESr~l~Evd~~G~~~~~ls-L~~g~~gL~~dipqaEGiamDd~g~lYIvSEP 303 (316)
T COG3204 227 DRDLFVLDVSGLEFNAITNSLLVLSDESRRLLEVDLSGEVIELLS-LTKGNHGLSSDIPQAEGIAMDDDGNLYIVSEP 303 (316)
T ss_pred ccceEeeccccceecCCCCcEEEEecCCceEEEEecCCCeeeeEE-eccCCCCCcccCCCcceeEECCCCCEEEEecC
Confidence 0 1112466777766667776666677888887765322221 1111111 3678999999999999865
No 81
>PF05096 Glu_cyclase_2: Glutamine cyclotransferase; InterPro: IPR007788 This family of enzymes 2.3.2.5 from EC catalyse the cyclization of free L-glutamine and N-terminal glutaminyl residues in proteins to pyroglutamate (5-oxoproline) and pyroglutamyl residues respectively []. This family includes plant and bacterial enzymes and seems unrelated to the mammalian enzymes.; PDB: 3NOK_B 2FAW_A 2IWA_A 3NOM_A 3NOL_A 3MBR_X.
Probab=98.06 E-value=0.0014 Score=57.61 Aligned_cols=157 Identities=18% Similarity=0.146 Sum_probs=103.9
Q ss_pred CCcccEEEccCCcEEEEeCCCCCCCccccccccccCCCCeEEEEeCCCCeEEEe--eccccccccEEEeCCCCEEEEEeC
Q 018474 132 SFTNDVIAASDGTLYFTVASTKYTPTDFYKDMAEGKPYGQLRKYDPKLKETTVL--HEGFYFANGIALSKNEDFVVVCES 209 (355)
Q Consensus 132 ~~~~~l~~d~dG~ly~~d~~~~~~~~~~~~~~~~~~~~g~l~~~dp~~~~~~~~--~~~~~~pngi~~~~dg~~l~v~~~ 209 (355)
.|..++.+..+|.||-++... ....+.++|++++++... .+.-.+..|+++..| .+|.-..
T Consensus 45 aFTQGL~~~~~g~LyESTG~y---------------G~S~l~~~d~~tg~~~~~~~l~~~~FgEGit~~~d--~l~qLTW 107 (264)
T PF05096_consen 45 AFTQGLEFLDDGTLYESTGLY---------------GQSSLRKVDLETGKVLQSVPLPPRYFGEGITILGD--KLYQLTW 107 (264)
T ss_dssp -EEEEEEEEETTEEEEEECST---------------TEEEEEEEETTTSSEEEEEE-TTT--EEEEEEETT--EEEEEES
T ss_pred ccCccEEecCCCEEEEeCCCC---------------CcEEEEEEECCCCcEEEEEECCccccceeEEEECC--EEEEEEe
Confidence 788899998899999987651 123688999999986533 344567899999865 5888888
Q ss_pred CCCeEEEEEeCCCCCcceeEecccCCCCcCceEECCCCCEEEEeecCCchhhHhhhcchhHHHHHHhccchhhcccCCCC
Q 018474 210 WKFRCRRYWLKGDRAGILDAFIENLPGGPDNINLAPDGSFWIGLIKMNQTGVRAIQKCREKWELLDAYPGLISLLLPMGS 289 (355)
Q Consensus 210 ~~~~i~~~~~~~~~~~~~~~~~~~~~g~p~~i~~d~~G~lwv~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 289 (355)
..+..++|+.+. ......+ ..++-.=|++.|. ..+|+++..
T Consensus 108 k~~~~f~yd~~t--l~~~~~~--~y~~EGWGLt~dg-~~Li~SDGS---------------------------------- 148 (264)
T PF05096_consen 108 KEGTGFVYDPNT--LKKIGTF--PYPGEGWGLTSDG-KRLIMSDGS---------------------------------- 148 (264)
T ss_dssp SSSEEEEEETTT--TEEEEEE--E-SSS--EEEECS-SCEEEE-SS----------------------------------
T ss_pred cCCeEEEEcccc--ceEEEEE--ecCCcceEEEcCC-CEEEEECCc----------------------------------
Confidence 888899999753 2223333 2233345688664 479998865
Q ss_pred CCceEEEEEeCCCCeEEEEEECC-CCCcccceeEEEEeCCEEEEeecCCCeEEEeeCCC
Q 018474 290 DAGARVVKVDGNDGKIIRDFNDP-DATYISFVTSAAEFDGNLYLASLQSNFIGILPLDG 347 (355)
Q Consensus 290 ~~~~~v~~~~~~~g~~~~~~~~~-~g~~~~~~~~~~~~~g~L~v~~~~~~~i~~~~~~~ 347 (355)
..+..+||++-+....+... +|........+--.+|.||.--+..+.|.+++..+
T Consensus 149 ---~~L~~~dP~~f~~~~~i~V~~~g~pv~~LNELE~i~G~IyANVW~td~I~~Idp~t 204 (264)
T PF05096_consen 149 ---SRLYFLDPETFKEVRTIQVTDNGRPVSNLNELEYINGKIYANVWQTDRIVRIDPET 204 (264)
T ss_dssp ---SEEEEE-TTT-SEEEEEE-EETTEE---EEEEEEETTEEEEEETTSSEEEEEETTT
T ss_pred ---cceEEECCcccceEEEEEEEECCEECCCcEeEEEEcCEEEEEeCCCCeEEEEeCCC
Confidence 36888999666666666553 34444445555556899999999999999998765
No 82
>KOG2055 consensus WD40 repeat protein [General function prediction only]
Probab=98.05 E-value=0.0028 Score=58.74 Aligned_cols=182 Identities=13% Similarity=0.114 Sum_probs=104.7
Q ss_pred CCCceEEEeeCCCeEEEEecCCEEEE--EEcCCCeeEEeeccCCC-cccCeEECCCCC--EEEEeCCCcEEEEc-CCC-e
Q 018474 52 NHPEDVSVVVSKGALYTATRDGWVKY--FILHNETLVNWKHIDSQ-SLLGLTTTKDGG--VILCDNEKGLLKVT-EEG-V 124 (355)
Q Consensus 52 ~~p~~i~~d~~~g~l~~~~~~g~i~~--~~~~~g~~~~~~~~~~~-p~~gl~~d~~g~--L~v~~~~~gl~~~~-~~g-~ 124 (355)
.+-.++.++|.--.|.++..+|.+.. +|.+.....+-...... +. ...+.++|. ++.+....=+|.+| .++ +
T Consensus 214 ~~I~sv~FHp~~plllvaG~d~~lrifqvDGk~N~~lqS~~l~~fPi~-~a~f~p~G~~~i~~s~rrky~ysyDle~ak~ 292 (514)
T KOG2055|consen 214 GGITSVQFHPTAPLLLVAGLDGTLRIFQVDGKVNPKLQSIHLEKFPIQ-KAEFAPNGHSVIFTSGRRKYLYSYDLETAKV 292 (514)
T ss_pred CCceEEEecCCCceEEEecCCCcEEEEEecCccChhheeeeeccCccc-eeeecCCCceEEEecccceEEEEeecccccc
Confidence 45678999976677778877875544 44433322211122222 34 566777886 33333223367777 355 4
Q ss_pred EEEcCC----cCCcccEEEccCCcEEEEeCCCCCCCccccccccccCCCCeEEEEeCCCCeEEEeeccccccccEEEeCC
Q 018474 125 EAIVPD----ASFTNDVIAASDGTLYFTVASTKYTPTDFYKDMAEGKPYGQLRKYDPKLKETTVLHEGFYFANGIALSKN 200 (355)
Q Consensus 125 ~~~~~~----~~~~~~l~~d~dG~ly~~d~~~~~~~~~~~~~~~~~~~~g~l~~~dp~~~~~~~~~~~~~~pngi~~~~d 200 (355)
+.+... ..+...+.+++++++.+.... .|.|+....+|+++-.-...-....+++++.|
T Consensus 293 ~k~~~~~g~e~~~~e~FeVShd~~fia~~G~-----------------~G~I~lLhakT~eli~s~KieG~v~~~~fsSd 355 (514)
T KOG2055|consen 293 TKLKPPYGVEEKSMERFEVSHDSNFIAIAGN-----------------NGHIHLLHAKTKELITSFKIEGVVSDFTFSSD 355 (514)
T ss_pred ccccCCCCcccchhheeEecCCCCeEEEccc-----------------CceEEeehhhhhhhhheeeeccEEeeEEEecC
Confidence 443222 156777888898875554332 45677776666654322111223457899999
Q ss_pred CCEEEEEeCCCCeEEEEEeCCCCCcceeEecccCCCCcCceEECCCCCEEEEeec
Q 018474 201 EDFVVVCESWKFRCRRYWLKGDRAGILDAFIENLPGGPDNINLAPDGSFWIGLIK 255 (355)
Q Consensus 201 g~~l~v~~~~~~~i~~~~~~~~~~~~~~~~~~~~~g~p~~i~~d~~G~lwv~~~~ 255 (355)
++.||++.. .+.||.+++.... -...+.+.-.-....++.+.+|. |+++..
T Consensus 356 sk~l~~~~~-~GeV~v~nl~~~~--~~~rf~D~G~v~gts~~~S~ng~-ylA~GS 406 (514)
T KOG2055|consen 356 SKELLASGG-TGEVYVWNLRQNS--CLHRFVDDGSVHGTSLCISLNGS-YLATGS 406 (514)
T ss_pred CcEEEEEcC-CceEEEEecCCcc--eEEEEeecCccceeeeeecCCCc-eEEecc
Confidence 998888764 4699999986542 23334432221234467777777 555544
No 83
>PRK01742 tolB translocation protein TolB; Provisional
Probab=98.05 E-value=0.0039 Score=59.92 Aligned_cols=156 Identities=12% Similarity=0.056 Sum_probs=85.7
Q ss_pred EEEEEEcCCCeeEEeeccCCCcccCeEECCCCC-EEEEeCCC---cEEEEc-CCC-eEEEcCCcCCcccEEEccCCc-EE
Q 018474 74 WVKYFILHNETLVNWKHIDSQSLLGLTTTKDGG-VILCDNEK---GLLKVT-EEG-VEAIVPDASFTNDVIAASDGT-LY 146 (355)
Q Consensus 74 ~i~~~~~~~g~~~~~~~~~~~p~~gl~~d~~g~-L~v~~~~~---gl~~~~-~~g-~~~~~~~~~~~~~l~~d~dG~-ly 146 (355)
.|+..|........+........ ...+.++|+ |.++...+ .|+.++ .+| .+.+.........+.++|||+ |.
T Consensus 185 ~i~i~d~dg~~~~~lt~~~~~v~-~p~wSPDG~~la~~s~~~~~~~i~i~dl~tg~~~~l~~~~g~~~~~~wSPDG~~La 263 (429)
T PRK01742 185 EVRVADYDGFNQFIVNRSSQPLM-SPAWSPDGSKLAYVSFENKKSQLVVHDLRSGARKVVASFRGHNGAPAFSPDGSRLA 263 (429)
T ss_pred EEEEECCCCCCceEeccCCCccc-cceEcCCCCEEEEEEecCCCcEEEEEeCCCCceEEEecCCCccCceeECCCCCEEE
Confidence 55555553323333222223345 788889997 43333222 377777 456 555443223344678999995 66
Q ss_pred EEeCCCCCCCccccccccccCCCCeEEEEeCCCCeEEEeeccccccccEEEeCCCCEEEEEeCCC--CeEEEEEeCCCCC
Q 018474 147 FTVASTKYTPTDFYKDMAEGKPYGQLRKYDPKLKETTVLHEGFYFANGIALSKNEDFVVVCESWK--FRCRRYWLKGDRA 224 (355)
Q Consensus 147 ~~d~~~~~~~~~~~~~~~~~~~~g~l~~~dp~~~~~~~~~~~~~~pngi~~~~dg~~l~v~~~~~--~~i~~~~~~~~~~ 224 (355)
++... ...-.||.+|.++++.+.+..........+++|||+.++++.... -.|+.++.++..
T Consensus 264 ~~~~~---------------~g~~~Iy~~d~~~~~~~~lt~~~~~~~~~~wSpDG~~i~f~s~~~g~~~I~~~~~~~~~- 327 (429)
T PRK01742 264 FASSK---------------DGVLNIYVMGANGGTPSQLTSGAGNNTEPSWSPDGQSILFTSDRSGSPQVYRMSASGGG- 327 (429)
T ss_pred EEEec---------------CCcEEEEEEECCCCCeEeeccCCCCcCCEEECCCCCEEEEEECCCCCceEEEEECCCCC-
Confidence 55322 012258899988887766654433455689999999877765433 356666554321
Q ss_pred cceeEecccCCCCcCceEECCCCCEEEE
Q 018474 225 GILDAFIENLPGGPDNINLAPDGSFWIG 252 (355)
Q Consensus 225 ~~~~~~~~~~~g~p~~i~~d~~G~lwv~ 252 (355)
.+.+ . ..+ .+..++++|+..+.
T Consensus 328 --~~~l-~-~~~--~~~~~SpDG~~ia~ 349 (429)
T PRK01742 328 --ASLV-G-GRG--YSAQISADGKTLVM 349 (429)
T ss_pred --eEEe-c-CCC--CCccCCCCCCEEEE
Confidence 1222 1 111 23456778874433
No 84
>KOG0279 consensus G protein beta subunit-like protein [Signal transduction mechanisms]
Probab=98.03 E-value=0.0075 Score=52.59 Aligned_cols=242 Identities=11% Similarity=0.081 Sum_probs=141.0
Q ss_pred ecCCCCCCCceEEEeeCCCeEEEEecCCEEEEEEcCCCeeE-EeeccCCCcccCeEECCCCCEEEEeCCCc-EEEEcC-C
Q 018474 46 LGEGCVNHPEDVSVVVSKGALYTATRDGWVKYFILHNETLV-NWKHIDSQSLLGLTTTKDGGVILCDNEKG-LLKVTE-E 122 (355)
Q Consensus 46 ~~~~~~~~p~~i~~d~~~g~l~~~~~~g~i~~~~~~~g~~~-~~~~~~~~p~~gl~~d~~g~L~v~~~~~g-l~~~~~-~ 122 (355)
...|.-..-+.++..+++...+.++.|+.++.+|..+|+.. ++.-...... ++++++|.+-.|..+.+. +..++. .
T Consensus 58 ~~~GHsH~v~dv~~s~dg~~alS~swD~~lrlWDl~~g~~t~~f~GH~~dVl-sva~s~dn~qivSGSrDkTiklwnt~g 136 (315)
T KOG0279|consen 58 RLTGHSHFVSDVVLSSDGNFALSASWDGTLRLWDLATGESTRRFVGHTKDVL-SVAFSTDNRQIVSGSRDKTIKLWNTLG 136 (315)
T ss_pred eeeccceEecceEEccCCceEEeccccceEEEEEecCCcEEEEEEecCCceE-EEEecCCCceeecCCCcceeeeeeecc
Confidence 33443344556677755566666788999999999887544 3333334567 899999998888766544 444453 3
Q ss_pred C--eEEEcCC-cCCcccEEEccCC-cEEEEeCCCCCCCccccccccccCCCCeEEEEeCCCCeEEEee-ccccccccEEE
Q 018474 123 G--VEAIVPD-ASFTNDVIAASDG-TLYFTVASTKYTPTDFYKDMAEGKPYGQLRKYDPKLKETTVLH-EGFYFANGIAL 197 (355)
Q Consensus 123 g--~~~~~~~-~~~~~~l~~d~dG-~ly~~d~~~~~~~~~~~~~~~~~~~~g~l~~~dp~~~~~~~~~-~~~~~pngi~~ 197 (355)
+ .+..... -.+++.+.+.|+. +.++...+ +...+-.||.++-+.+... .....-|.+++
T Consensus 137 ~ck~t~~~~~~~~WVscvrfsP~~~~p~Ivs~s----------------~DktvKvWnl~~~~l~~~~~gh~~~v~t~~v 200 (315)
T KOG0279|consen 137 VCKYTIHEDSHREWVSCVRFSPNESNPIIVSAS----------------WDKTVKVWNLRNCQLRTTFIGHSGYVNTVTV 200 (315)
T ss_pred cEEEEEecCCCcCcEEEEEEcCCCCCcEEEEcc----------------CCceEEEEccCCcchhhccccccccEEEEEE
Confidence 3 3332222 3789999999874 55544332 2445777787666554332 22345688999
Q ss_pred eCCCCEEEEEeCCCCeEEEEEeCCCCCcceeEecccCCCCcCceEECCCCCEEEEeecCCchhhHhhhcchhHHHHHHhc
Q 018474 198 SKNEDFVVVCESWKFRCRRYWLKGDRAGILDAFIENLPGGPDNINLAPDGSFWIGLIKMNQTGVRAIQKCREKWELLDAY 277 (355)
Q Consensus 198 ~~dg~~l~v~~~~~~~i~~~~~~~~~~~~~~~~~~~~~g~p~~i~~d~~G~lwv~~~~~~~~~~~~~~~~~~~~~~~~~~ 277 (355)
+|||. +....-..+.+..++++..+ ....+. . ......+++.+ .++|++..-.
T Consensus 201 SpDGs-lcasGgkdg~~~LwdL~~~k--~lysl~-a-~~~v~sl~fsp-nrywL~~at~--------------------- 253 (315)
T KOG0279|consen 201 SPDGS-LCASGGKDGEAMLWDLNEGK--NLYSLE-A-FDIVNSLCFSP-NRYWLCAATA--------------------- 253 (315)
T ss_pred CCCCC-EEecCCCCceEEEEEccCCc--eeEecc-C-CCeEeeEEecC-CceeEeeccC---------------------
Confidence 99998 55555556678888885432 122221 1 11235577876 5788877542
Q ss_pred cchhhcccCCCCCCceEEEEEeCCCCeEEEEEECC-CCC----cccceeEEEEe-CCEEEEeecCCCeEEEeeCC
Q 018474 278 PGLISLLLPMGSDAGARVVKVDGNDGKIIRDFNDP-DAT----YISFVTSAAEF-DGNLYLASLQSNFIGILPLD 346 (355)
Q Consensus 278 ~~~~~~~~~~~~~~~~~v~~~~~~~g~~~~~~~~~-~g~----~~~~~~~~~~~-~g~L~v~~~~~~~i~~~~~~ 346 (355)
..|..+|.+.++.++.+... .|. .-..+.+++.. +|.-.+..+..+.|.+.++.
T Consensus 254 ---------------~sIkIwdl~~~~~v~~l~~d~~g~s~~~~~~~clslaws~dG~tLf~g~td~~irv~qv~ 313 (315)
T KOG0279|consen 254 ---------------TSIKIWDLESKAVVEELKLDGIGPSSKAGDPICLSLAWSADGQTLFAGYTDNVIRVWQVA 313 (315)
T ss_pred ---------------CceEEEeccchhhhhhccccccccccccCCcEEEEEEEcCCCcEEEeeecCCcEEEEEee
Confidence 13555555344444444221 110 01233444433 46666666778888877764
No 85
>KOG0282 consensus mRNA splicing factor [Function unknown]
Probab=98.02 E-value=0.00032 Score=65.08 Aligned_cols=187 Identities=14% Similarity=0.171 Sum_probs=121.3
Q ss_pred CCCCCCceEEEeeCCCeEEEEecCCEEEEEEcCCCeeEEeeccCCCcccCeEECCCC-CEEEEe-CCCcEEEEc-CCC--
Q 018474 49 GCVNHPEDVSVVVSKGALYTATRDGWVKYFILHNETLVNWKHIDSQSLLGLTTTKDG-GVILCD-NEKGLLKVT-EEG-- 123 (355)
Q Consensus 49 ~~~~~p~~i~~d~~~g~l~~~~~~g~i~~~~~~~g~~~~~~~~~~~p~~gl~~d~~g-~L~v~~-~~~gl~~~~-~~g-- 123 (355)
|.-..-.++.+...+..+..++.|+.|..+|.++|+...-.+....|. .+.+.+++ +++++. ..+.|..+| ..|
T Consensus 256 gH~k~Vrd~~~s~~g~~fLS~sfD~~lKlwDtETG~~~~~f~~~~~~~-cvkf~pd~~n~fl~G~sd~ki~~wDiRs~kv 334 (503)
T KOG0282|consen 256 GHRKPVRDASFNNCGTSFLSASFDRFLKLWDTETGQVLSRFHLDKVPT-CVKFHPDNQNIFLVGGSDKKIRQWDIRSGKV 334 (503)
T ss_pred cchhhhhhhhccccCCeeeeeecceeeeeeccccceEEEEEecCCCce-eeecCCCCCcEEEEecCCCcEEEEeccchHH
Confidence 333445566677556667788889999999999998765444455677 88888877 666554 445688888 566
Q ss_pred eEEEcCCcCCcccEEEccCCcEEEEeCCCCCCCccccccccccCCCCeEEEEeCCCCe-EEEee--ccccccccEEEeCC
Q 018474 124 VEAIVPDASFTNDVIAASDGTLYFTVASTKYTPTDFYKDMAEGKPYGQLRKYDPKLKE-TTVLH--EGFYFANGIALSKN 200 (355)
Q Consensus 124 ~~~~~~~~~~~~~l~~d~dG~ly~~d~~~~~~~~~~~~~~~~~~~~g~l~~~dp~~~~-~~~~~--~~~~~pngi~~~~d 200 (355)
++.+......++++.+-++|.-+++.+. ...+..|+-...- ++... .....| .++++|.
T Consensus 335 vqeYd~hLg~i~~i~F~~~g~rFissSD-----------------dks~riWe~~~~v~ik~i~~~~~hsmP-~~~~~P~ 396 (503)
T KOG0282|consen 335 VQEYDRHLGAILDITFVDEGRRFISSSD-----------------DKSVRIWENRIPVPIKNIADPEMHTMP-CLTLHPN 396 (503)
T ss_pred HHHHHhhhhheeeeEEccCCceEeeecc-----------------CccEEEEEcCCCccchhhcchhhccCc-ceecCCC
Confidence 5555555578999999999988887654 1223333322221 11111 112233 5789999
Q ss_pred CCEEEEEeCCCCeEEEEEeCCC-CCcceeEecc-cCCCCcCceEECCCCCEEEEeec
Q 018474 201 EDFVVVCESWKFRCRRYWLKGD-RAGILDAFIE-NLPGGPDNINLAPDGSFWIGLIK 255 (355)
Q Consensus 201 g~~l~v~~~~~~~i~~~~~~~~-~~~~~~~~~~-~~~g~p~~i~~d~~G~lwv~~~~ 255 (355)
++ .+.+.+..++|..|..... +....+.|-. ..+|++-.+.+++||++.++-..
T Consensus 397 ~~-~~~aQs~dN~i~ifs~~~~~r~nkkK~feGh~vaGys~~v~fSpDG~~l~SGds 452 (503)
T KOG0282|consen 397 GK-WFAAQSMDNYIAIFSTVPPFRLNKKKRFEGHSVAGYSCQVDFSPDGRTLCSGDS 452 (503)
T ss_pred CC-eehhhccCceEEEEecccccccCHhhhhcceeccCceeeEEEcCCCCeEEeecC
Confidence 98 7788899999999986432 1222233322 34578888899999988776544
No 86
>KOG0266 consensus WD40 repeat-containing protein [General function prediction only]
Probab=98.02 E-value=0.004 Score=60.32 Aligned_cols=155 Identities=15% Similarity=0.243 Sum_probs=106.9
Q ss_pred CCCCCCCceEEEeeCCCeEEEEecCCEEEEEEcC-CCeeEE-eeccCCCcccCeEECCCCCEEEEeCCCcEEEEc--CCC
Q 018474 48 EGCVNHPEDVSVVVSKGALYTATRDGWVKYFILH-NETLVN-WKHIDSQSLLGLTTTKDGGVILCDNEKGLLKVT--EEG 123 (355)
Q Consensus 48 ~~~~~~p~~i~~d~~~g~l~~~~~~g~i~~~~~~-~g~~~~-~~~~~~~p~~gl~~d~~g~L~v~~~~~gl~~~~--~~g 123 (355)
.+.-..-.++++.+++..+..++.|+.|..+|.+ .+...+ +.......+ ++++.++|++++....++.+++- ++|
T Consensus 200 ~~h~~~v~~~~fs~d~~~l~s~s~D~tiriwd~~~~~~~~~~l~gH~~~v~-~~~f~p~g~~i~Sgs~D~tvriWd~~~~ 278 (456)
T KOG0266|consen 200 SGHTRGVSDVAFSPDGSYLLSGSDDKTLRIWDLKDDGRNLKTLKGHSTYVT-SVAFSPDGNLLVSGSDDGTVRIWDVRTG 278 (456)
T ss_pred cccccceeeeEECCCCcEEEEecCCceEEEeeccCCCeEEEEecCCCCceE-EEEecCCCCEEEEecCCCcEEEEeccCC
Confidence 3455667788888656666677789999999983 434433 322234567 89999999888877777766665 455
Q ss_pred --eEEEcCCcCCcccEEEccCCcEEEEeCCCCCCCccccccccccCCCCeEEEEeCCCCeEE--Eeecccccc---ccEE
Q 018474 124 --VEAIVPDASFTNDVIAASDGTLYFTVASTKYTPTDFYKDMAEGKPYGQLRKYDPKLKETT--VLHEGFYFA---NGIA 196 (355)
Q Consensus 124 --~~~~~~~~~~~~~l~~d~dG~ly~~d~~~~~~~~~~~~~~~~~~~~g~l~~~dp~~~~~~--~~~~~~~~p---ngi~ 196 (355)
.+.+......+.++++.++|++.++.+. .+.+..||..+++.. ....+...+ .-++
T Consensus 279 ~~~~~l~~hs~~is~~~f~~d~~~l~s~s~-----------------d~~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~ 341 (456)
T KOG0266|consen 279 ECVRKLKGHSDGISGLAFSPDGNLLVSASY-----------------DGTIRVWDLETGSKLCLKLLSGAENSAPVTSVQ 341 (456)
T ss_pred eEEEeeeccCCceEEEEECCCCCEEEEcCC-----------------CccEEEEECCCCceeeeecccCCCCCCceeEEE
Confidence 5666665578899999999988776533 567889999888742 222333334 6788
Q ss_pred EeCCCCEEEEEeCCCCeEEEEEeCC
Q 018474 197 LSKNEDFVVVCESWKFRCRRYWLKG 221 (355)
Q Consensus 197 ~~~dg~~l~v~~~~~~~i~~~~~~~ 221 (355)
++|++++++... .++.+..|++..
T Consensus 342 fsp~~~~ll~~~-~d~~~~~w~l~~ 365 (456)
T KOG0266|consen 342 FSPNGKYLLSAS-LDRTLKLWDLRS 365 (456)
T ss_pred ECCCCcEEEEec-CCCeEEEEEccC
Confidence 999999776654 445666677653
No 87
>PTZ00421 coronin; Provisional
Probab=97.98 E-value=0.02 Score=55.80 Aligned_cols=152 Identities=17% Similarity=0.125 Sum_probs=92.3
Q ss_pred CCCceEEEee-CCCeEEEEecCCEEEEEEcCCCee--------EEeeccCCCcccCeEECCCC-CEEEEeCCCc-EEEEc
Q 018474 52 NHPEDVSVVV-SKGALYTATRDGWVKYFILHNETL--------VNWKHIDSQSLLGLTTTKDG-GVILCDNEKG-LLKVT 120 (355)
Q Consensus 52 ~~p~~i~~d~-~~g~l~~~~~~g~i~~~~~~~g~~--------~~~~~~~~~p~~gl~~d~~g-~L~v~~~~~g-l~~~~ 120 (355)
..-.++.+.| ++..|.+++.|+.|..++..++.. ..+......+. .+++.+++ +++++...++ +..+|
T Consensus 76 ~~V~~v~fsP~d~~~LaSgS~DgtIkIWdi~~~~~~~~~~~~l~~L~gH~~~V~-~l~f~P~~~~iLaSgs~DgtVrIWD 154 (493)
T PTZ00421 76 GPIIDVAFNPFDPQKLFTASEDGTIMGWGIPEEGLTQNISDPIVHLQGHTKKVG-IVSFHPSAMNVLASAGADMVVNVWD 154 (493)
T ss_pred CCEEEEEEcCCCCCEEEEEeCCCEEEEEecCCCccccccCcceEEecCCCCcEE-EEEeCcCCCCEEEEEeCCCEEEEEE
Confidence 3446888886 455788888999999998755421 12211223456 78888765 4555444445 44445
Q ss_pred -CCC--eEEEcCCcCCcccEEEccCCcEEEEeCCCCCCCccccccccccCCCCeEEEEeCCCCeEEEeeccc--cccccE
Q 018474 121 -EEG--VEAIVPDASFTNDVIAASDGTLYFTVASTKYTPTDFYKDMAEGKPYGQLRKYDPKLKETTVLHEGF--YFANGI 195 (355)
Q Consensus 121 -~~g--~~~~~~~~~~~~~l~~d~dG~ly~~d~~~~~~~~~~~~~~~~~~~~g~l~~~dp~~~~~~~~~~~~--~~pngi 195 (355)
.++ ...+......++++++.++|.+.++.+. .+.+..||+.+++...-.... .....+
T Consensus 155 l~tg~~~~~l~~h~~~V~sla~spdG~lLatgs~-----------------Dg~IrIwD~rsg~~v~tl~~H~~~~~~~~ 217 (493)
T PTZ00421 155 VERGKAVEVIKCHSDQITSLEWNLDGSLLCTTSK-----------------DKKLNIIDPRDGTIVSSVEAHASAKSQRC 217 (493)
T ss_pred CCCCeEEEEEcCCCCceEEEEEECCCCEEEEecC-----------------CCEEEEEECCCCcEEEEEecCCCCcceEE
Confidence 355 4444433357889999999987776543 567888999877643222211 122345
Q ss_pred EEeCCCCEEEEEeC---CCCeEEEEEeCC
Q 018474 196 ALSKNEDFVVVCES---WKFRCRRYWLKG 221 (355)
Q Consensus 196 ~~~~dg~~l~v~~~---~~~~i~~~~~~~ 221 (355)
.+.+++..++.+.. ..+.|..||++.
T Consensus 218 ~w~~~~~~ivt~G~s~s~Dr~VklWDlr~ 246 (493)
T PTZ00421 218 LWAKRKDLIITLGCSKSQQRQIMLWDTRK 246 (493)
T ss_pred EEcCCCCeEEEEecCCCCCCeEEEEeCCC
Confidence 67777775554432 245688888753
No 88
>PRK01029 tolB translocation protein TolB; Provisional
Probab=97.96 E-value=0.0095 Score=57.17 Aligned_cols=174 Identities=14% Similarity=0.110 Sum_probs=97.5
Q ss_pred eEEEeeCCCe---EEEEecC--CEEEEEEcCCCeeEEeeccCCCcccCeEECCCCC-EEEEeCC---CcEEEE--c-CC-
Q 018474 56 DVSVVVSKGA---LYTATRD--GWVKYFILHNETLVNWKHIDSQSLLGLTTTKDGG-VILCDNE---KGLLKV--T-EE- 122 (355)
Q Consensus 56 ~i~~d~~~g~---l~~~~~~--g~i~~~~~~~g~~~~~~~~~~~p~~gl~~d~~g~-L~v~~~~---~gl~~~--~-~~- 122 (355)
+..+.|++.. +|++..+ ..|+..+..+|+.+.+....+... ..++.+||+ |.++... ..++.. + ..
T Consensus 189 sP~wSPDG~~~~~~y~S~~~g~~~I~~~~l~~g~~~~lt~~~g~~~-~p~wSPDG~~Laf~s~~~g~~di~~~~~~~~~g 267 (428)
T PRK01029 189 TPTWMHIGSGFPYLYVSYKLGVPKIFLGSLENPAGKKILALQGNQL-MPTFSPRKKLLAFISDRYGNPDLFIQSFSLETG 267 (428)
T ss_pred cceEccCCCceEEEEEEccCCCceEEEEECCCCCceEeecCCCCcc-ceEECCCCCEEEEEECCCCCcceeEEEeecccC
Confidence 4467765543 3455543 468999998887777655444455 677889995 4443322 134442 3 22
Q ss_pred --C-eEEEcCCc-CCcccEEEccCCc-EEEEeCCCCCCCccccccccccCCCCeEEEEeCC--CCeEEEeeccccccccE
Q 018474 123 --G-VEAIVPDA-SFTNDVIAASDGT-LYFTVASTKYTPTDFYKDMAEGKPYGQLRKYDPK--LKETTVLHEGFYFANGI 195 (355)
Q Consensus 123 --g-~~~~~~~~-~~~~~l~~d~dG~-ly~~d~~~~~~~~~~~~~~~~~~~~g~l~~~dp~--~~~~~~~~~~~~~pngi 195 (355)
+ .+.+.... .......++|||+ |+++... .....+|.++.+ +++.+.+..........
T Consensus 268 ~~g~~~~lt~~~~~~~~~p~wSPDG~~Laf~s~~---------------~g~~~ly~~~~~~~g~~~~~lt~~~~~~~~p 332 (428)
T PRK01029 268 AIGKPRRLLNEAFGTQGNPSFSPDGTRLVFVSNK---------------DGRPRIYIMQIDPEGQSPRLLTKKYRNSSCP 332 (428)
T ss_pred CCCcceEeecCCCCCcCCeEECCCCCEEEEEECC---------------CCCceEEEEECcccccceEEeccCCCCccce
Confidence 3 34444321 2334678999995 6665322 012257777643 23344333222223456
Q ss_pred EEeCCCCEEEEEeCC--CCeEEEEEeCCCCCcceeEecccCCCCcCceEECCCCCE
Q 018474 196 ALSKNEDFVVVCESW--KFRCRRYWLKGDRAGILDAFIENLPGGPDNINLAPDGSF 249 (355)
Q Consensus 196 ~~~~dg~~l~v~~~~--~~~i~~~~~~~~~~~~~~~~~~~~~g~p~~i~~d~~G~l 249 (355)
+++|||+.++++... ...|+.+++++... +.+... +....+....++|+.
T Consensus 333 ~wSPDG~~Laf~~~~~g~~~I~v~dl~~g~~---~~Lt~~-~~~~~~p~wSpDG~~ 384 (428)
T PRK01029 333 AWSPDGKKIAFCSVIKGVRQICVYDLATGRD---YQLTTS-PENKESPSWAIDSLH 384 (428)
T ss_pred eECCCCCEEEEEEcCCCCcEEEEEECCCCCe---EEccCC-CCCccceEECCCCCE
Confidence 899999988877543 34688998865432 222211 222345677888863
No 89
>COG4946 Uncharacterized protein related to the periplasmic component of the Tol biopolymer transport system [Function unknown]
Probab=97.94 E-value=0.0081 Score=56.09 Aligned_cols=85 Identities=18% Similarity=0.215 Sum_probs=60.5
Q ss_pred ccCCCC-eEEEEeCCCCeEEEeeccccccccEEEeCCCCEEEEEeCCCCeEEEEEeCCCCCcceeEecccCCCCcCceEE
Q 018474 165 EGKPYG-QLRKYDPKLKETTVLHEGFYFANGIALSKNEDFVVVCESWKFRCRRYWLKGDRAGILDAFIENLPGGPDNINL 243 (355)
Q Consensus 165 ~~~~~g-~l~~~dp~~~~~~~~~~~~~~pngi~~~~dg~~l~v~~~~~~~i~~~~~~~~~~~~~~~~~~~~~g~p~~i~~ 243 (355)
.++..| .+..||..+++++.+..++.....+.+++||+.+.+++ .+..||.+++++.+ .+....+..++..++..
T Consensus 376 igt~dgD~l~iyd~~~~e~kr~e~~lg~I~av~vs~dGK~~vvaN-dr~el~vididngn---v~~idkS~~~lItdf~~ 451 (668)
T COG4946 376 IGTNDGDKLGIYDKDGGEVKRIEKDLGNIEAVKVSPDGKKVVVAN-DRFELWVIDIDNGN---VRLIDKSEYGLITDFDW 451 (668)
T ss_pred EeccCCceEEEEecCCceEEEeeCCccceEEEEEcCCCcEEEEEc-CceEEEEEEecCCC---eeEecccccceeEEEEE
Confidence 444455 78889999999999888888888999999999888876 56789999997543 33222233455566666
Q ss_pred CCCCCEEEEee
Q 018474 244 APDGSFWIGLI 254 (355)
Q Consensus 244 d~~G~lwv~~~ 254 (355)
.+++ =|+|-.
T Consensus 452 ~~ns-r~iAYa 461 (668)
T COG4946 452 HPNS-RWIAYA 461 (668)
T ss_pred cCCc-eeEEEe
Confidence 6655 455543
No 90
>PF07433 DUF1513: Protein of unknown function (DUF1513); InterPro: IPR008311 There are currently no experimental data for members of this group or their homologues, nor do they exhibit features indicative of any function.
Probab=97.91 E-value=0.01 Score=53.31 Aligned_cols=103 Identities=14% Similarity=0.160 Sum_probs=61.5
Q ss_pred CCcccCeEECCCCCE--EEEeCCC-cEEEEc-CCC--eEEEcCCc--CCcccEEEccCCcEEEEeCCCCCCCcccccccc
Q 018474 93 SQSLLGLTTTKDGGV--ILCDNEK-GLLKVT-EEG--VEAIVPDA--SFTNDVIAASDGTLYFTVASTKYTPTDFYKDMA 164 (355)
Q Consensus 93 ~~p~~gl~~d~~g~L--~v~~~~~-gl~~~~-~~g--~~~~~~~~--~~~~~l~~d~dG~ly~~d~~~~~~~~~~~~~~~ 164 (355)
.+.+ +++.++.... .++---+ -.+.+| .+| ...+.... .|-=+-++++||++.+++.+.
T Consensus 5 ~RgH-~~a~~p~~~~avafaRRPG~~~~v~D~~~g~~~~~~~a~~gRHFyGHg~fs~dG~~LytTEnd------------ 71 (305)
T PF07433_consen 5 ARGH-GVAAHPTRPEAVAFARRPGTFALVFDCRTGQLLQRLWAPPGRHFYGHGVFSPDGRLLYTTEND------------ 71 (305)
T ss_pred cccc-ceeeCCCCCeEEEEEeCCCcEEEEEEcCCCceeeEEcCCCCCEEecCEEEcCCCCEEEEeccc------------
Confidence 4567 8888874433 3333221 256667 466 44444332 344456899999654444321
Q ss_pred ccCCCCeEEEEeCCCC--eEEEeeccccccccEEEeCCCCEEEEEe
Q 018474 165 EGKPYGQLRKYDPKLK--ETTVLHEGFYFANGIALSKNEDFVVVCE 208 (355)
Q Consensus 165 ~~~~~g~l~~~dp~~~--~~~~~~~~~~~pngi~~~~dg~~l~v~~ 208 (355)
..+..|.|-+||...+ ++..+....-.|.-+.+.|||+.|.|++
T Consensus 72 ~~~g~G~IgVyd~~~~~~ri~E~~s~GIGPHel~l~pDG~tLvVAN 117 (305)
T PF07433_consen 72 YETGRGVIGVYDAARGYRRIGEFPSHGIGPHELLLMPDGETLVVAN 117 (305)
T ss_pred cCCCcEEEEEEECcCCcEEEeEecCCCcChhhEEEcCCCCEEEEEc
Confidence 0133677889998622 2233344555688899999999899987
No 91
>KOG1273 consensus WD40 repeat protein [General function prediction only]
Probab=97.89 E-value=0.004 Score=55.16 Aligned_cols=227 Identities=12% Similarity=0.103 Sum_probs=125.0
Q ss_pred CCCceEEEeeCCCeEEEEecCCEEEEEEcCCCeeEEeeccCCCcccCeEECCCCCEEEEeCCC-cEEEEc-CCC--eEEE
Q 018474 52 NHPEDVSVVVSKGALYTATRDGWVKYFILHNETLVNWKHIDSQSLLGLTTTKDGGVILCDNEK-GLLKVT-EEG--VEAI 127 (355)
Q Consensus 52 ~~p~~i~~d~~~g~l~~~~~~g~i~~~~~~~g~~~~~~~~~~~p~~gl~~d~~g~L~v~~~~~-gl~~~~-~~g--~~~~ 127 (355)
...+++.+.+-|..|-+|+.+|+|..+|..|-...+.....-+|.+++++.++|++.++.+.+ .+...| ..| ++++
T Consensus 24 ~~a~~~~Fs~~G~~lAvGc~nG~vvI~D~~T~~iar~lsaH~~pi~sl~WS~dgr~LltsS~D~si~lwDl~~gs~l~ri 103 (405)
T KOG1273|consen 24 PLAECCQFSRWGDYLAVGCANGRVVIYDFDTFRIARMLSAHVRPITSLCWSRDGRKLLTSSRDWSIKLWDLLKGSPLKRI 103 (405)
T ss_pred CccceEEeccCcceeeeeccCCcEEEEEccccchhhhhhccccceeEEEecCCCCEeeeecCCceeEEEeccCCCceeEE
Confidence 348899999777778899999999999986655433222112333389999999988876553 344444 345 3332
Q ss_pred c--CCc-------------------CCcccEEEccCCcEEEEe-CCC------CCCC-ccccccccccCCCCeEEEEeCC
Q 018474 128 V--PDA-------------------SFTNDVIAASDGTLYFTV-AST------KYTP-TDFYKDMAEGKPYGQLRKYDPK 178 (355)
Q Consensus 128 ~--~~~-------------------~~~~~l~~d~dG~ly~~d-~~~------~~~~-~~~~~~~~~~~~~g~l~~~dp~ 178 (355)
. .+. ..|.=+.+++.-.-++.. ... ..+. ...-.-|+.|+..|.+..||..
T Consensus 104 rf~spv~~~q~hp~k~n~~va~~~~~sp~vi~~s~~~h~~Lp~d~d~dln~sas~~~fdr~g~yIitGtsKGkllv~~a~ 183 (405)
T KOG1273|consen 104 RFDSPVWGAQWHPRKRNKCVATIMEESPVVIDFSDPKHSVLPKDDDGDLNSSASHGVFDRRGKYIITGTSKGKLLVYDAE 183 (405)
T ss_pred EccCccceeeeccccCCeEEEEEecCCcEEEEecCCceeeccCCCccccccccccccccCCCCEEEEecCcceEEEEecc
Confidence 1 110 111112222111111111 100 0000 0112236678888999999987
Q ss_pred CCeEEEee--ccccccccEEEeCCCCEEEEEeCCCCeEEEEEeCC----CCCccee---EecccCCC-CcCceEECCCCC
Q 018474 179 LKETTVLH--EGFYFANGIALSKNEDFVVVCESWKFRCRRYWLKG----DRAGILD---AFIENLPG-GPDNINLAPDGS 248 (355)
Q Consensus 179 ~~~~~~~~--~~~~~pngi~~~~dg~~l~v~~~~~~~i~~~~~~~----~~~~~~~---~~~~~~~g-~p~~i~~d~~G~ 248 (355)
+-+...-. +.......|-++..|+++ +.++...-|..|+++. ++.++.+ .+-+-... .=..+.++.+|.
T Consensus 184 t~e~vas~rits~~~IK~I~~s~~g~~l-iiNtsDRvIR~ye~~di~~~~r~~e~e~~~K~qDvVNk~~Wk~ccfs~dge 262 (405)
T KOG1273|consen 184 TLECVASFRITSVQAIKQIIVSRKGRFL-IINTSDRVIRTYEISDIDDEGRDGEVEPEHKLQDVVNKLQWKKCCFSGDGE 262 (405)
T ss_pred hheeeeeeeechheeeeEEEEeccCcEE-EEecCCceEEEEehhhhcccCccCCcChhHHHHHHHhhhhhhheeecCCcc
Confidence 66543211 112233457788888854 5566666677788742 1222222 11110000 114577899998
Q ss_pred EEEEeecCCchhhHhhhcchhHHHHHHhccchhhcccCCCCCCceEEEEEeCCCCeEEEEEECCCC
Q 018474 249 FWIGLIKMNQTGVRAIQKCREKWELLDAYPGLISLLLPMGSDAGARVVKVDGNDGKIIRDFNDPDA 314 (355)
Q Consensus 249 lwv~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~g~~~~~~~~~~g 314 (355)
+.+|.... ...++......|..+..++++.|
T Consensus 263 Yv~a~s~~-----------------------------------aHaLYIWE~~~GsLVKILhG~kg 293 (405)
T KOG1273|consen 263 YVCAGSAR-----------------------------------AHALYIWEKSIGSLVKILHGTKG 293 (405)
T ss_pred EEEecccc-----------------------------------ceeEEEEecCCcceeeeecCCch
Confidence 88877531 23566666657888888888776
No 92
>PF14583 Pectate_lyase22: Oligogalacturonate lyase; PDB: 3C5M_C 3PE7_A.
Probab=97.84 E-value=0.0061 Score=56.43 Aligned_cols=160 Identities=14% Similarity=0.198 Sum_probs=80.0
Q ss_pred CCCe-EEEEec--CCEEEEEEcCCCeeEEeeccCC-CcccCeEECCCCC-EEEEeCCCcEEEEc-CCC-eEEEcCC-cCC
Q 018474 62 SKGA-LYTATR--DGWVKYFILHNETLVNWKHIDS-QSLLGLTTTKDGG-VILCDNEKGLLKVT-EEG-VEAIVPD-ASF 133 (355)
Q Consensus 62 ~~g~-l~~~~~--~g~i~~~~~~~g~~~~~~~~~~-~p~~gl~~d~~g~-L~v~~~~~gl~~~~-~~g-~~~~~~~-~~~ 133 (355)
++.. ||.+.. ...++.+|.++++.+++....+ ... |..+.++++ +|.....+.|.+++ .+. .+.+..- ..+
T Consensus 46 dG~kllF~s~~dg~~nly~lDL~t~~i~QLTdg~g~~~~-g~~~s~~~~~~~Yv~~~~~l~~vdL~T~e~~~vy~~p~~~ 124 (386)
T PF14583_consen 46 DGRKLLFASDFDGNRNLYLLDLATGEITQLTDGPGDNTF-GGFLSPDDRALYYVKNGRSLRRVDLDTLEERVVYEVPDDW 124 (386)
T ss_dssp TS-EEEEEE-TTSS-EEEEEETTT-EEEE---SS-B-TT-T-EE-TTSSEEEEEETTTEEEEEETTT--EEEEEE--TTE
T ss_pred CCCEEEEEeccCCCcceEEEEcccCEEEECccCCCCCcc-ceEEecCCCeEEEEECCCeEEEEECCcCcEEEEEECCccc
Confidence 3444 444443 4578999999999999876432 244 555554544 55454566899999 455 4333221 112
Q ss_pred c--ccEEEccCCcEEEEeCCCC--C---CCccccccccccCCCCeEEEEeCCCCeEEEeeccccccccEEEeCCC-CEEE
Q 018474 134 T--NDVIAASDGTLYFTVASTK--Y---TPTDFYKDMAEGKPYGQLRKYDPKLKETTVLHEGFYFANGIALSKNE-DFVV 205 (355)
Q Consensus 134 ~--~~l~~d~dG~ly~~d~~~~--~---~~~~~~~~~~~~~~~g~l~~~dp~~~~~~~~~~~~~~pngi~~~~dg-~~l~ 205 (355)
. -..+++.|++.++.....+ + .......++++..+..+|+++|.++|+.+++...-..-+-+.++|.. ..+-
T Consensus 125 ~g~gt~v~n~d~t~~~g~e~~~~d~~~l~~~~~f~e~~~a~p~~~i~~idl~tG~~~~v~~~~~wlgH~~fsP~dp~li~ 204 (386)
T PF14583_consen 125 KGYGTWVANSDCTKLVGIEISREDWKPLTKWKGFREFYEARPHCRIFTIDLKTGERKVVFEDTDWLGHVQFSPTDPTLIM 204 (386)
T ss_dssp EEEEEEEE-TTSSEEEEEEEEGGG-----SHHHHHHHHHC---EEEEEEETTT--EEEEEEESS-EEEEEEETTEEEEEE
T ss_pred ccccceeeCCCccEEEEEEEeehhccCccccHHHHHHHhhCCCceEEEEECCCCceeEEEecCccccCcccCCCCCCEEE
Confidence 2 1234566787776543211 1 11123345666677779999999999998886554333445555532 3455
Q ss_pred EEeCC-----CCeEEEEEeCCC
Q 018474 206 VCESW-----KFRCRRYWLKGD 222 (355)
Q Consensus 206 v~~~~-----~~~i~~~~~~~~ 222 (355)
+|..+ ..|||.++.+|.
T Consensus 205 fCHEGpw~~Vd~RiW~i~~dg~ 226 (386)
T PF14583_consen 205 FCHEGPWDLVDQRIWTINTDGS 226 (386)
T ss_dssp EEE-S-TTTSS-SEEEEETTS-
T ss_pred EeccCCcceeceEEEEEEcCCC
Confidence 55543 358888887664
No 93
>KOG4499 consensus Ca2+-binding protein Regucalcin/SMP30 [Inorganic ion transport and metabolism; Signal transduction mechanisms]
Probab=97.80 E-value=0.0024 Score=54.39 Aligned_cols=114 Identities=15% Similarity=0.095 Sum_probs=74.4
Q ss_pred CCcccCeEECCCCCEEEEeCC---------CcEEEEc-CCC-eEEEcCCcCCcccEEEccCC-cEEEEeCCCCCCCcccc
Q 018474 93 SQSLLGLTTTKDGGVILCDNE---------KGLLKVT-EEG-VEAIVPDASFTNDVIAASDG-TLYFTVASTKYTPTDFY 160 (355)
Q Consensus 93 ~~p~~gl~~d~~g~L~v~~~~---------~gl~~~~-~~g-~~~~~~~~~~~~~l~~d~dG-~ly~~d~~~~~~~~~~~ 160 (355)
++-+ .-..|++|+.|+++.. +|.++.. ..+ ++.+-....-+|+++.|.|. .+|+.|+.. |.+..
T Consensus 109 nR~N-DgkvdP~Gryy~GtMad~~~~le~~~g~Ly~~~~~h~v~~i~~~v~IsNgl~Wd~d~K~fY~iDsln-~~V~a-- 184 (310)
T KOG4499|consen 109 NRLN-DGKVDPDGRYYGGTMADFGDDLEPIGGELYSWLAGHQVELIWNCVGISNGLAWDSDAKKFYYIDSLN-YEVDA-- 184 (310)
T ss_pred cccc-cCccCCCCceeeeeeccccccccccccEEEEeccCCCceeeehhccCCccccccccCcEEEEEccCc-eEEee--
Confidence 4455 5668899999998753 2333333 444 55554444778999999876 799998751 22222
Q ss_pred ccccccCCCCeEEEEeCCCCeEE---Ee---e----ccccccccEEEeCCCCEEEEEeCCCCeEEEEEeCCCC
Q 018474 161 KDMAEGKPYGQLRKYDPKLKETT---VL---H----EGFYFANGIALSKNEDFVVVCESWKFRCRRYWLKGDR 223 (355)
Q Consensus 161 ~~~~~~~~~g~l~~~dp~~~~~~---~~---~----~~~~~pngi~~~~dg~~l~v~~~~~~~i~~~~~~~~~ 223 (355)
|.||-.+|.+. ++ . .....|.|++++-+|+ ||++....++|.++++...+
T Consensus 185 ------------~dyd~~tG~~snr~~i~dlrk~~~~e~~~PDGm~ID~eG~-L~Va~~ng~~V~~~dp~tGK 244 (310)
T KOG4499|consen 185 ------------YDYDCPTGDLSNRKVIFDLRKSQPFESLEPDGMTIDTEGN-LYVATFNGGTVQKVDPTTGK 244 (310)
T ss_pred ------------eecCCCcccccCcceeEEeccCCCcCCCCCCcceEccCCc-EEEEEecCcEEEEECCCCCc
Confidence 33444444321 11 0 1235699999999987 99999889999999986543
No 94
>KOG0289 consensus mRNA splicing factor [General function prediction only]
Probab=97.78 E-value=0.019 Score=53.06 Aligned_cols=185 Identities=15% Similarity=0.155 Sum_probs=107.2
Q ss_pred CeEECCCCCEEEEeCCCcEEEEc--CCC--eEEEcCC--cCCcccEEEccCCcEEEEeCCCCCCCccccccccccCCCCe
Q 018474 98 GLTTTKDGGVILCDNEKGLLKVT--EEG--VEAIVPD--ASFTNDVIAASDGTLYFTVASTKYTPTDFYKDMAEGKPYGQ 171 (355)
Q Consensus 98 gl~~d~~g~L~v~~~~~gl~~~~--~~g--~~~~~~~--~~~~~~l~~d~dG~ly~~d~~~~~~~~~~~~~~~~~~~~g~ 171 (355)
++...+.|.-++....++.+.+. .+| +...... .-...+.++.|||.|+.+... .+-
T Consensus 308 ~ls~h~tgeYllsAs~d~~w~Fsd~~~g~~lt~vs~~~s~v~~ts~~fHpDgLifgtgt~-----------------d~~ 370 (506)
T KOG0289|consen 308 GLSLHPTGEYLLSASNDGTWAFSDISSGSQLTVVSDETSDVEYTSAAFHPDGLIFGTGTP-----------------DGV 370 (506)
T ss_pred eeeeccCCcEEEEecCCceEEEEEccCCcEEEEEeeccccceeEEeeEcCCceEEeccCC-----------------Cce
Confidence 77778888877766677877776 366 4333332 134667889999999876432 445
Q ss_pred EEEEeCCCCeEEEeeccccc-cccEEEeCCCCEEEEEeCCCCeEEEEEeCCCCCcceeEec-ccCCCCcCceEECCCCCE
Q 018474 172 LRKYDPKLKETTVLHEGFYF-ANGIALSKNEDFVVVCESWKFRCRRYWLKGDRAGILDAFI-ENLPGGPDNINLAPDGSF 249 (355)
Q Consensus 172 l~~~dp~~~~~~~~~~~~~~-pngi~~~~dg~~l~v~~~~~~~i~~~~~~~~~~~~~~~~~-~~~~g~p~~i~~d~~G~l 249 (355)
+-.||.+.+....-..+... -..|+|+.+|= ..++....+.|..||++. ...++++. +...+ ...+.+|..|.+
T Consensus 371 vkiwdlks~~~~a~Fpght~~vk~i~FsENGY-~Lat~add~~V~lwDLRK--l~n~kt~~l~~~~~-v~s~~fD~SGt~ 446 (506)
T KOG0289|consen 371 VKIWDLKSQTNVAKFPGHTGPVKAISFSENGY-WLATAADDGSVKLWDLRK--LKNFKTIQLDEKKE-VNSLSFDQSGTY 446 (506)
T ss_pred EEEEEcCCccccccCCCCCCceeEEEeccCce-EEEEEecCCeEEEEEehh--hcccceeecccccc-ceeEEEcCCCCe
Confidence 55566554431111112111 24578888875 444455566699999854 33444442 11111 244779999988
Q ss_pred EEEeecCCchhhHhhhcchhHHHHHHhccchhhcccCCCCCCceEEEEEeCCCCeE--EEEEECCCCCcccceeEEEEeC
Q 018474 250 WIGLIKMNQTGVRAIQKCREKWELLDAYPGLISLLLPMGSDAGARVVKVDGNDGKI--IRDFNDPDATYISFVTSAAEFD 327 (355)
Q Consensus 250 wv~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~g~~--~~~~~~~~g~~~~~~~~~~~~~ 327 (355)
.+..... -.|+.+..++-++ +..+++..| ..+.+.+.+
T Consensus 447 L~~~g~~------------------------------------l~Vy~~~k~~k~W~~~~~~~~~sg----~st~v~Fg~ 486 (506)
T KOG0289|consen 447 LGIAGSD------------------------------------LQVYICKKKTKSWTEIKELADHSG----LSTGVRFGE 486 (506)
T ss_pred EEeecce------------------------------------eEEEEEecccccceeeehhhhccc----ccceeeecc
Confidence 7776331 2577777633333 334445444 345566666
Q ss_pred CEEEEeecCCCeEEEe
Q 018474 328 GNLYLASLQSNFIGIL 343 (355)
Q Consensus 328 g~L~v~~~~~~~i~~~ 343 (355)
..-|+++-..+++.++
T Consensus 487 ~aq~l~s~smd~~l~~ 502 (506)
T KOG0289|consen 487 HAQYLASTSMDAILRL 502 (506)
T ss_pred cceEEeeccchhheEE
Confidence 6677776666666443
No 95
>PF02333 Phytase: Phytase; InterPro: IPR003431 Phytase (3.1.3.8 from EC) (phytate 3-phosphatase) is a secreted enzyme which hydrolyses phytate to release inorganic phosphate. This family appears to represent a novel enzyme that shows phytase activity () and has been shown to consist of a single structural unit with a six-bladed propeller folding architecture ().; GO: 0016158 3-phytase activity; PDB: 3AMS_A 3AMR_A 1QLG_A 2POO_A 1H6L_A 1CVM_A 1POO_A.
Probab=97.78 E-value=0.0038 Score=57.91 Aligned_cols=138 Identities=20% Similarity=0.297 Sum_probs=79.8
Q ss_pred eEEEEeCCCCeEEEee-------ccccccccEEEeC---CCCEEEEEeCCCCeEEEEEeCCCCCc-----ceeEecccCC
Q 018474 171 QLRKYDPKLKETTVLH-------EGFYFANGIALSK---NEDFVVVCESWKFRCRRYWLKGDRAG-----ILDAFIENLP 235 (355)
Q Consensus 171 ~l~~~dp~~~~~~~~~-------~~~~~pngi~~~~---dg~~l~v~~~~~~~i~~~~~~~~~~~-----~~~~~~~~~~ 235 (355)
++|++||.++.++.+. .....+.|+|+.. +|+...+.....+.+.+|.+.....+ ..+.| ..+
T Consensus 130 ~~f~id~~~g~L~~v~~~~~p~~~~~~e~yGlcly~~~~~g~~ya~v~~k~G~~~Qy~L~~~~~g~v~~~lVR~f--~~~ 207 (381)
T PF02333_consen 130 RLFRIDPDTGELTDVTDPAAPIATDLSEPYGLCLYRSPSTGALYAFVNGKDGRVEQYELTDDGDGKVSATLVREF--KVG 207 (381)
T ss_dssp EEEEEETTTTEEEE-CBTTC-EE-SSSSEEEEEEEE-TTT--EEEEEEETTSEEEEEEEEE-TTSSEEEEEEEEE--E-S
T ss_pred EEEEecCCCCcceEcCCCCcccccccccceeeEEeecCCCCcEEEEEecCCceEEEEEEEeCCCCcEeeEEEEEe--cCC
Confidence 6899999888877653 2334478999864 45533333345577888888422111 23333 355
Q ss_pred CCcCceEECC-CCCEEEEeecCCchhhHhhhcchhHHHHHHhccchhhcccCCCCCCceEEEEEeC--CCCeEEEEE--E
Q 018474 236 GGPDNINLAP-DGSFWIGLIKMNQTGVRAIQKCREKWELLDAYPGLISLLLPMGSDAGARVVKVDG--NDGKIIRDF--N 310 (355)
Q Consensus 236 g~p~~i~~d~-~G~lwv~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~--~~g~~~~~~--~ 310 (355)
+.+.+++.|. .|.+|++... .||++|+. +.+..-+.+ .
T Consensus 208 sQ~EGCVVDDe~g~LYvgEE~-------------------------------------~GIW~y~Aep~~~~~~~~v~~~ 250 (381)
T PF02333_consen 208 SQPEGCVVDDETGRLYVGEED-------------------------------------VGIWRYDAEPEGGNDRTLVASA 250 (381)
T ss_dssp S-EEEEEEETTTTEEEEEETT-------------------------------------TEEEEEESSCCC-S--EEEEEB
T ss_pred CcceEEEEecccCCEEEecCc-------------------------------------cEEEEEecCCCCCCcceeeecc
Confidence 6789998875 4789999865 48999964 122222222 1
Q ss_pred CCCCCcccceeEEEE-----eCCEEEEeecCCCeEEEeeCCCC
Q 018474 311 DPDATYISFVTSAAE-----FDGNLYLASLQSNFIGILPLDGP 348 (355)
Q Consensus 311 ~~~g~~~~~~~~~~~-----~~g~L~v~~~~~~~i~~~~~~~~ 348 (355)
...++ ...+-++.. ..|+|.+++-..+...+|+..+.
T Consensus 251 ~g~~l-~aDvEGlaly~~~~g~gYLivSsQG~~sf~Vy~r~~~ 292 (381)
T PF02333_consen 251 DGDGL-VADVEGLALYYGSDGKGYLIVSSQGDNSFAVYDREGP 292 (381)
T ss_dssp SSSSB--S-EEEEEEEE-CCC-EEEEEEEGGGTEEEEEESSTT
T ss_pred ccccc-ccCccceEEEecCCCCeEEEEEcCCCCeEEEEecCCC
Confidence 22222 223333332 23789999999999999998764
No 96
>PRK02888 nitrous-oxide reductase; Validated
Probab=97.78 E-value=0.002 Score=63.10 Aligned_cols=87 Identities=13% Similarity=0.056 Sum_probs=61.8
Q ss_pred CeEEEEeCCC-----CeEEEeeccccccccEEEeCCCCEEEEEeCCCCeEEEEEeCCCC------CcceeEecc--cCCC
Q 018474 170 GQLRKYDPKL-----KETTVLHEGFYFANGIALSKNEDFVVVCESWKFRCRRYWLKGDR------AGILDAFIE--NLPG 236 (355)
Q Consensus 170 g~l~~~dp~~-----~~~~~~~~~~~~pngi~~~~dg~~l~v~~~~~~~i~~~~~~~~~------~~~~~~~~~--~~~g 236 (355)
+.+-.+|..+ .++.....-...|.|++++|||+++|+++-....+.+++++..+ +........ .+.-
T Consensus 296 n~V~VID~~t~~~~~~~v~~yIPVGKsPHGV~vSPDGkylyVanklS~tVSVIDv~k~k~~~~~~~~~~~~vvaevevGl 375 (635)
T PRK02888 296 SKVPVVDGRKAANAGSALTRYVPVPKNPHGVNTSPDGKYFIANGKLSPTVTVIDVRKLDDLFDGKIKPRDAVVAEPELGL 375 (635)
T ss_pred CEEEEEECCccccCCcceEEEEECCCCccceEECCCCCEEEEeCCCCCcEEEEEChhhhhhhhccCCccceEEEeeccCC
Confidence 4588888876 35555566677899999999999999999989999999985421 111111111 1111
Q ss_pred CcCceEECCCCCEEEEeecC
Q 018474 237 GPDNINLAPDGSFWIGLIKM 256 (355)
Q Consensus 237 ~p~~i~~d~~G~lwv~~~~~ 256 (355)
-|-...+|.+|+.|++.+-.
T Consensus 376 GPLHTaFDg~G~aytslf~d 395 (635)
T PRK02888 376 GPLHTAFDGRGNAYTTLFLD 395 (635)
T ss_pred CcceEEECCCCCEEEeEeec
Confidence 36778899999999988764
No 97
>PRK01029 tolB translocation protein TolB; Provisional
Probab=97.76 E-value=0.044 Score=52.63 Aligned_cols=162 Identities=11% Similarity=-0.014 Sum_probs=79.8
Q ss_pred EEEEEEcCCCeeEEeeccCCCcccCeEECCCCC---E-EEEeCC--CcEEEEcC-CC-eEEEcCCcCCcccEEEccCC-c
Q 018474 74 WVKYFILHNETLVNWKHIDSQSLLGLTTTKDGG---V-ILCDNE--KGLLKVTE-EG-VEAIVPDASFTNDVIAASDG-T 144 (355)
Q Consensus 74 ~i~~~~~~~g~~~~~~~~~~~p~~gl~~d~~g~---L-~v~~~~--~gl~~~~~-~g-~~~~~~~~~~~~~l~~d~dG-~ 144 (355)
.|+..|...+..+.+........ .-++.+||+ + |+.... ..|+..+. .| .+.+...........++||| .
T Consensus 166 ~l~~~d~dG~~~~~lt~~~~~~~-sP~wSPDG~~~~~~y~S~~~g~~~I~~~~l~~g~~~~lt~~~g~~~~p~wSPDG~~ 244 (428)
T PRK01029 166 ELWSVDYDGQNLRPLTQEHSLSI-TPTWMHIGSGFPYLYVSYKLGVPKIFLGSLENPAGKKILALQGNQLMPTFSPRKKL 244 (428)
T ss_pred eEEEEcCCCCCceEcccCCCCcc-cceEccCCCceEEEEEEccCCCceEEEEECCCCCceEeecCCCCccceEECCCCCE
Confidence 56677764444444433222222 446778874 2 344322 24888884 55 55554432333456889999 5
Q ss_pred EEEEeCCCCCCCccccccccccCCCCeEEEEeCCC---CeEEEeecc-ccccccEEEeCCCCEEEEEeCC--CCeEEEEE
Q 018474 145 LYFTVASTKYTPTDFYKDMAEGKPYGQLRKYDPKL---KETTVLHEG-FYFANGIALSKNEDFVVVCESW--KFRCRRYW 218 (355)
Q Consensus 145 ly~~d~~~~~~~~~~~~~~~~~~~~g~l~~~dp~~---~~~~~~~~~-~~~pngi~~~~dg~~l~v~~~~--~~~i~~~~ 218 (355)
|.++.... +.....+..++.++ ++.+.+... .......+++|||+.++++... ...|++++
T Consensus 245 Laf~s~~~-------------g~~di~~~~~~~~~g~~g~~~~lt~~~~~~~~~p~wSPDG~~Laf~s~~~g~~~ly~~~ 311 (428)
T PRK01029 245 LAFISDRY-------------GNPDLFIQSFSLETGAIGKPRRLLNEAFGTQGNPSFSPDGTRLVFVSNKDGRPRIYIMQ 311 (428)
T ss_pred EEEEECCC-------------CCcceeEEEeecccCCCCcceEeecCCCCCcCCeEECCCCCEEEEEECCCCCceEEEEE
Confidence 66653220 01111222244432 233333322 1223356899999977776532 33688877
Q ss_pred eCCCCCcceeEecccCCCCcCceEECCCCCEEE
Q 018474 219 LKGDRAGILDAFIENLPGGPDNINLAPDGSFWI 251 (355)
Q Consensus 219 ~~~~~~~~~~~~~~~~~g~p~~i~~d~~G~lwv 251 (355)
+++.. +..+.+. ...+.......++||+..+
T Consensus 312 ~~~~g-~~~~~lt-~~~~~~~~p~wSPDG~~La 342 (428)
T PRK01029 312 IDPEG-QSPRLLT-KKYRNSSCPAWSPDGKKIA 342 (428)
T ss_pred Ccccc-cceEEec-cCCCCccceeECCCCCEEE
Confidence 64321 1122221 1112223456788887433
No 98
>PF05787 DUF839: Bacterial protein of unknown function (DUF839); InterPro: IPR008557 This family consists of bacterial proteins of unknown function.
Probab=97.75 E-value=0.00071 Score=66.08 Aligned_cols=75 Identities=17% Similarity=0.184 Sum_probs=46.4
Q ss_pred CCcccEEEccCCcEEEEeCCCCCCCc-------cccccccccCCCCeEEEEeCCCCeEEEeeccc--cccccEEEeCCCC
Q 018474 132 SFTNDVIAASDGTLYFTVASTKYTPT-------DFYKDMAEGKPYGQLRKYDPKLKETTVLHEGF--YFANGIALSKNED 202 (355)
Q Consensus 132 ~~~~~l~~d~dG~ly~~d~~~~~~~~-------~~~~~~~~~~~~g~l~~~dp~~~~~~~~~~~~--~~pngi~~~~dg~ 202 (355)
..|..|++|++|+||++......... ...+.+...... .+..+++.+++++.+.... ....|++++||++
T Consensus 436 ~sPDNL~~d~~G~LwI~eD~~~~~~~l~g~t~~G~~~~~~~~~G~-~~~~~~~~~g~~~rf~~~P~gaE~tG~~fspDg~ 514 (524)
T PF05787_consen 436 ASPDNLAFDPDGNLWIQEDGGGSNNNLPGVTPDGEVYDFARNDGN-NVWAYDPDTGELKRFLVGPNGAEITGPCFSPDGR 514 (524)
T ss_pred CCCCceEECCCCCEEEEeCCCCCCcccccccccCceeeeeecccc-eeeeccccccceeeeccCCCCcccccceECCCCC
Confidence 78888999999999987654221100 000111110101 1556788888887776443 4457899999999
Q ss_pred EEEEE
Q 018474 203 FVVVC 207 (355)
Q Consensus 203 ~l~v~ 207 (355)
.+|+.
T Consensus 515 tlFvn 519 (524)
T PF05787_consen 515 TLFVN 519 (524)
T ss_pred EEEEE
Confidence 88874
No 99
>KOG0278 consensus Serine/threonine kinase receptor-associated protein [Lipid transport and metabolism]
Probab=97.73 E-value=0.0055 Score=52.66 Aligned_cols=142 Identities=12% Similarity=0.099 Sum_probs=95.9
Q ss_pred EEEeeCCCeEEEEecCCEEEEEEcCCCeeEEeeccCCCcccCeEECCCCCEEEEeCCCcEEEEcCC--C-eEEEcCCcCC
Q 018474 57 VSVVVSKGALYTATRDGWVKYFILHNETLVNWKHIDSQSLLGLTTTKDGGVILCDNEKGLLKVTEE--G-VEAIVPDASF 133 (355)
Q Consensus 57 i~~d~~~g~l~~~~~~g~i~~~~~~~g~~~~~~~~~~~p~~gl~~d~~g~L~v~~~~~gl~~~~~~--g-~~~~~~~~~~ 133 (355)
+.+-..+..+..++.++.|..+|..+|+..+-......+. ++-+..+|++.....+.++.-.+.. + ++.+..+ ..
T Consensus 149 v~wc~eD~~iLSSadd~tVRLWD~rTgt~v~sL~~~s~Vt-SlEvs~dG~ilTia~gssV~Fwdaksf~~lKs~k~P-~n 226 (334)
T KOG0278|consen 149 VLWCHEDKCILSSADDKTVRLWDHRTGTEVQSLEFNSPVT-SLEVSQDGRILTIAYGSSVKFWDAKSFGLLKSYKMP-CN 226 (334)
T ss_pred EEEeccCceEEeeccCCceEEEEeccCcEEEEEecCCCCc-ceeeccCCCEEEEecCceeEEeccccccceeeccCc-cc
Confidence 3344345556666778999999999997665554455677 8889899998877767677666642 4 5554333 45
Q ss_pred cccEEEccCCcEEEEeCCCCCCCccccccccccCCCCeEEEEeCCCCeEEEe-ecccccc-ccEEEeCCCCEEEEEeCCC
Q 018474 134 TNDVIAASDGTLYFTVASTKYTPTDFYKDMAEGKPYGQLRKYDPKLKETTVL-HEGFYFA-NGIALSKNEDFVVVCESWK 211 (355)
Q Consensus 134 ~~~l~~d~dG~ly~~d~~~~~~~~~~~~~~~~~~~~g~l~~~dp~~~~~~~~-~~~~~~p-ngi~~~~dg~~l~v~~~~~ 211 (355)
+++-...|+-.+|++... ...+|+||=.|++-... ..+-..| ..+.++|||. +|.+.+..
T Consensus 227 V~SASL~P~k~~fVaGge-----------------d~~~~kfDy~TgeEi~~~nkgh~gpVhcVrFSPdGE-~yAsGSED 288 (334)
T KOG0278|consen 227 VESASLHPKKEFFVAGGE-----------------DFKVYKFDYNTGEEIGSYNKGHFGPVHCVRFSPDGE-LYASGSED 288 (334)
T ss_pred cccccccCCCceEEecCc-----------------ceEEEEEeccCCceeeecccCCCCceEEEEECCCCc-eeeccCCC
Confidence 666677788888887433 45788888877754333 2332233 5688999998 89888776
Q ss_pred CeEEEEE
Q 018474 212 FRCRRYW 218 (355)
Q Consensus 212 ~~i~~~~ 218 (355)
+.|..+.
T Consensus 289 GTirlWQ 295 (334)
T KOG0278|consen 289 GTIRLWQ 295 (334)
T ss_pred ceEEEEE
Confidence 6555444
No 100
>TIGR03118 PEPCTERM_chp_1 conserved hypothetical protein TIGR03118. This model describes and uncharacterized conserved hypothetical protein. Members are found with the C-terminal putative exosortase interaction domain, PEP-CTERM, in Nitrosospira multiformis, Rhodoferax ferrireducens, Solibacter usitatus Ellin6076, and Acidobacteria bacterium Ellin345. It is found without the PEP-CTERM domain in several other species, including Burkholderia ambifaria, Gloeobacter violaceus PCC 7421, and three copies in the Acanthamoeba polyphaga mimivirus.
Probab=97.73 E-value=0.016 Score=51.53 Aligned_cols=223 Identities=14% Similarity=0.188 Sum_probs=120.5
Q ss_pred CCcccCeEECCCCCEEEEeCCCcEEEE-cCC-----C-e---EE-EcCC-----cCCcccEEEccCCcEEEEeCCCCCCC
Q 018474 93 SQSLLGLTTTKDGGVILCDNEKGLLKV-TEE-----G-V---EA-IVPD-----ASFTNDVIAASDGTLYFTVASTKYTP 156 (355)
Q Consensus 93 ~~p~~gl~~d~~g~L~v~~~~~gl~~~-~~~-----g-~---~~-~~~~-----~~~~~~l~~d~dG~ly~~d~~~~~~~ 156 (355)
-.+. ||++.+.+-+||++.+.++..+ +-+ | . .. ++.. ...|.++++.....+-++... +...
T Consensus 23 ~N~W-Gia~~p~~~~WVadngT~~~TlYdg~~~~~~g~~~~L~vtiP~~~~~~~~~~PTGiVfN~~~~F~vt~~g-~~~~ 100 (336)
T TIGR03118 23 RNAW-GLSYRPGGPFWVANTGTGTATLYVGNPDTQPLVQDPLVVVIPAPPPLAAEGTPTGQVFNGSDTFVVSGEG-ITGP 100 (336)
T ss_pred cccc-eeEecCCCCEEEecCCcceEEeecCCcccccCCccceEEEecCCCCCCCCCCccEEEEeCCCceEEcCCC-cccc
Confidence 3588 9999999999999987664433 322 3 1 11 2211 135666666543332232211 0000
Q ss_pred ccccccccccCCCCeEEEEeCCCCeE------EEeecc--ccccccEEEeCC--CCEEEEEeCCCCeEEEEEeCCCCCcc
Q 018474 157 TDFYKDMAEGKPYGQLRKYDPKLKET------TVLHEG--FYFANGIALSKN--EDFVVVCESWKFRCRRYWLKGDRAGI 226 (355)
Q Consensus 157 ~~~~~~~~~~~~~g~l~~~dp~~~~~------~~~~~~--~~~pngi~~~~d--g~~l~v~~~~~~~i~~~~~~~~~~~~ 226 (355)
...+-.+..|.|--|+|.-+.. .++-.. ...=.|+|+... +.+||.++-..++|-+|+-+=.+...
T Consensus 101 ----a~Fif~tEdGTisaW~p~v~~t~~~~~~~~~d~s~~gavYkGLAi~~~~~~~~LYaadF~~g~IDVFd~~f~~~~~ 176 (336)
T TIGR03118 101 ----SRFLFVTEDGTLSGWAPALGTTRMTRAEIVVDASQQGNVYKGLAVGPTGGGDYLYAANFRQGRIDVFKGSFRPPPL 176 (336)
T ss_pred ----eeEEEEeCCceEEeecCcCCcccccccEEEEccCCCcceeeeeEEeecCCCceEEEeccCCCceEEecCccccccC
Confidence 0111123355666666532222 112111 122246776643 67899999988899999742211111
Q ss_pred eeEecc-cCC-C-CcCceEECCCCCEEEEeecCCchhhHhhhcchhHHHHHHhccchhhcccCCCCCCceEEEEEeCCCC
Q 018474 227 LDAFIE-NLP-G-GPDNINLAPDGSFWIGLIKMNQTGVRAIQKCREKWELLDAYPGLISLLLPMGSDAGARVVKVDGNDG 303 (355)
Q Consensus 227 ~~~~~~-~~~-g-~p~~i~~d~~G~lwv~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~g 303 (355)
...|.+ .+| + -|-|+.-- .|++||.-......-.+ .+-+...+-|-+||+ +|
T Consensus 177 ~g~F~DP~iPagyAPFnIqni-g~~lyVtYA~qd~~~~d-----------------------~v~G~G~G~VdvFd~-~G 231 (336)
T TIGR03118 177 PGSFIDPALPAGYAPFNVQNL-GGTLYVTYAQQDADRND-----------------------EVAGAGLGYVNVFTL-NG 231 (336)
T ss_pred CCCccCCCCCCCCCCcceEEE-CCeEEEEEEecCCcccc-----------------------cccCCCcceEEEEcC-CC
Confidence 112332 222 1 35566543 47899987552111000 011234468999999 99
Q ss_pred eEEEEEECCCCCcccceeEEEE-----eCCEEEEeecCCCeEEEeeCC
Q 018474 304 KIIRDFNDPDATYISFVTSAAE-----FDGNLYLASLQSNFIGILPLD 346 (355)
Q Consensus 304 ~~~~~~~~~~g~~~~~~~~~~~-----~~g~L~v~~~~~~~i~~~~~~ 346 (355)
+.++.+.+..-+..++--.++. -.|.|.||++...+|-.++..
T Consensus 232 ~l~~r~as~g~LNaPWG~a~APa~FG~~sg~lLVGNFGDG~InaFD~~ 279 (336)
T TIGR03118 232 QLLRRVASSGRLNAPWGLAIAPESFGSLSGALLVGNFGDGTINAYDPQ 279 (336)
T ss_pred cEEEEeccCCcccCCceeeeChhhhCCCCCCeEEeecCCceeEEecCC
Confidence 9999997644332222222222 249999999999999999865
No 101
>cd00216 PQQ_DH Dehydrogenases with pyrrolo-quinoline quinone (PQQ) as cofactor, like ethanol, methanol, and membrane bound glucose dehydrogenases. The alignment model contains an 8-bladed beta-propeller.
Probab=97.70 E-value=0.036 Score=54.23 Aligned_cols=112 Identities=12% Similarity=0.067 Sum_probs=65.0
Q ss_pred CCeEEEEecCCEEEEEEcCCCeeEEeeccCC-----C----cccCeEECCCCCEEEEeCCCcEEEEcC-CC-eEE-EcCC
Q 018474 63 KGALYTATRDGWVKYFILHNETLVNWKHIDS-----Q----SLLGLTTTKDGGVILCDNEKGLLKVTE-EG-VEA-IVPD 130 (355)
Q Consensus 63 ~g~l~~~~~~g~i~~~~~~~g~~~~~~~~~~-----~----p~~gl~~d~~g~L~v~~~~~gl~~~~~-~g-~~~-~~~~ 130 (355)
++.+|+++.++.++.+|.++|+..--..... . .. +.+...++++|+++..+.++.+|. +| ..- ....
T Consensus 61 ~g~vy~~~~~g~l~AlD~~tG~~~W~~~~~~~~~~~~~~~~~~-g~~~~~~~~V~v~~~~g~v~AlD~~TG~~~W~~~~~ 139 (488)
T cd00216 61 DGDMYFTTSHSALFALDAATGKVLWRYDPKLPADRGCCDVVNR-GVAYWDPRKVFFGTFDGRLVALDAETGKQVWKFGNN 139 (488)
T ss_pred CCEEEEeCCCCcEEEEECCCChhhceeCCCCCccccccccccC-CcEEccCCeEEEecCCCeEEEEECCCCCEeeeecCC
Confidence 7789999989999999998886431111111 0 11 334432389999987777999994 77 322 1111
Q ss_pred cC------CcccEEEccCCcEEEEeCCCCCCCccccccccccCCCCeEEEEeCCCCeEEEe
Q 018474 131 AS------FTNDVIAASDGTLYFTVASTKYTPTDFYKDMAEGKPYGQLRKYDPKLKETTVL 185 (355)
Q Consensus 131 ~~------~~~~l~~d~dG~ly~~d~~~~~~~~~~~~~~~~~~~~g~l~~~dp~~~~~~~~ 185 (355)
.. .-...++. ++.+|++.....+ ......+.++.+|.++|+....
T Consensus 140 ~~~~~~~~i~ssP~v~-~~~v~vg~~~~~~---------~~~~~~g~v~alD~~TG~~~W~ 190 (488)
T cd00216 140 DQVPPGYTMTGAPTIV-KKLVIIGSSGAEF---------FACGVRGALRAYDVETGKLLWR 190 (488)
T ss_pred CCcCcceEecCCCEEE-CCEEEEecccccc---------ccCCCCcEEEEEECCCCceeeE
Confidence 11 11222333 3677776543111 0012256899999998876543
No 102
>KOG0272 consensus U4/U6 small nuclear ribonucleoprotein Prp4 (contains WD40 repeats) [RNA processing and modification]
Probab=97.68 E-value=0.0051 Score=56.43 Aligned_cols=186 Identities=17% Similarity=0.149 Sum_probs=110.2
Q ss_pred CCCCCCCceEEEeeC--CCeEEEEecCCEEEEEEcCCCee-EEeeccCCCcccCeEECCCCCEEEEeCCCcEEEEc--CC
Q 018474 48 EGCVNHPEDVSVVVS--KGALYTATRDGWVKYFILHNETL-VNWKHIDSQSLLGLTTTKDGGVILCDNEKGLLKVT--EE 122 (355)
Q Consensus 48 ~~~~~~p~~i~~d~~--~g~l~~~~~~g~i~~~~~~~g~~-~~~~~~~~~p~~gl~~d~~g~L~v~~~~~gl~~~~--~~ 122 (355)
.|....-.++.+.|. +..+-.++.||.+..++..+.+. ..+.....+.. .+++.++|+...+...+.-+++- .+
T Consensus 214 ~gH~~~v~~~~fhP~~~~~~lat~s~Dgtvklw~~~~e~~l~~l~gH~~RVs-~VafHPsG~~L~TasfD~tWRlWD~~t 292 (459)
T KOG0272|consen 214 RGHTSRVGAAVFHPVDSDLNLATASADGTVKLWKLSQETPLQDLEGHLARVS-RVAFHPSGKFLGTASFDSTWRLWDLET 292 (459)
T ss_pred eccccceeeEEEccCCCccceeeeccCCceeeeccCCCcchhhhhcchhhhe-eeeecCCCceeeecccccchhhccccc
Confidence 355556667778865 33677788899887777644322 22222234556 78899999988877666555554 23
Q ss_pred CeEEEc--CCcCCcccEEEccCCcEEEEeCCCCCCCccccccccccCCCCeEEEEeCCCCeEEEeecc-ccccccEEEeC
Q 018474 123 GVEAIV--PDASFTNDVIAASDGTLYFTVASTKYTPTDFYKDMAEGKPYGQLRKYDPKLKETTVLHEG-FYFANGIALSK 199 (355)
Q Consensus 123 g~~~~~--~~~~~~~~l~~d~dG~ly~~d~~~~~~~~~~~~~~~~~~~~g~l~~~dp~~~~~~~~~~~-~~~pngi~~~~ 199 (355)
+.+.+. .....+.++++-+||.|-.+.... ..++ .||..+++-..+..+ .....+++++|
T Consensus 293 k~ElL~QEGHs~~v~~iaf~~DGSL~~tGGlD---------------~~~R--vWDlRtgr~im~L~gH~k~I~~V~fsP 355 (459)
T KOG0272|consen 293 KSELLLQEGHSKGVFSIAFQPDGSLAATGGLD---------------SLGR--VWDLRTGRCIMFLAGHIKEILSVAFSP 355 (459)
T ss_pred chhhHhhcccccccceeEecCCCceeeccCcc---------------chhh--eeecccCcEEEEecccccceeeEeECC
Confidence 312111 122679999999999998875431 1222 345556654444333 34456889999
Q ss_pred CCCEEEEEeCCCCeEEEEEeCCCCCcceeEecccCCCCcCceEECC-CCCEEEEeec
Q 018474 200 NEDFVVVCESWKFRCRRYWLKGDRAGILDAFIENLPGGPDNINLAP-DGSFWIGLIK 255 (355)
Q Consensus 200 dg~~l~v~~~~~~~i~~~~~~~~~~~~~~~~~~~~~g~p~~i~~d~-~G~lwv~~~~ 255 (355)
+|- .+.+.+..+.+.++++...+. .-+ +......-..+.+++ .|.+.+++..
T Consensus 356 NGy-~lATgs~Dnt~kVWDLR~r~~--ly~-ipAH~nlVS~Vk~~p~~g~fL~Tasy 408 (459)
T KOG0272|consen 356 NGY-HLATGSSDNTCKVWDLRMRSE--LYT-IPAHSNLVSQVKYSPQEGYFLVTASY 408 (459)
T ss_pred Cce-EEeecCCCCcEEEeeeccccc--cee-cccccchhhheEecccCCeEEEEccc
Confidence 995 667777777777788754322 111 112222345567886 4556655543
No 103
>COG2133 Glucose/sorbosone dehydrogenases [Carbohydrate transport and metabolism]
Probab=97.67 E-value=0.0073 Score=56.44 Aligned_cols=158 Identities=20% Similarity=0.292 Sum_probs=89.2
Q ss_pred CeEECCCCCEEEEeCCC-------------c-EEEEcCCC-e---------EEEcCCcCCcccEEEccC-CcEEEEeCCC
Q 018474 98 GLTTTKDGGVILCDNEK-------------G-LLKVTEEG-V---------EAIVPDASFTNDVIAASD-GTLYFTVAST 152 (355)
Q Consensus 98 gl~~d~~g~L~v~~~~~-------------g-l~~~~~~g-~---------~~~~~~~~~~~~l~~d~d-G~ly~~d~~~ 152 (355)
.|++++||.|||+.... | +++++..+ + +++......|.+++++|. |.||+++...
T Consensus 181 ~l~f~pDG~Lyvs~G~~~~~~~aq~~~~~~Gk~~r~~~a~~~~~d~p~~~~~i~s~G~RN~qGl~w~P~tg~Lw~~e~g~ 260 (399)
T COG2133 181 RLVFGPDGKLYVTTGSNGDPALAQDNVSLAGKVLRIDRAGIIPADNPFPNSEIWSYGHRNPQGLAWHPVTGALWTTEHGP 260 (399)
T ss_pred cEEECCCCcEEEEeCCCCCcccccCccccccceeeeccCcccccCCCCCCcceEEeccCCccceeecCCCCcEEEEecCC
Confidence 58999999999976433 1 33443222 1 122222278999999996 8999998763
Q ss_pred C-CCCccccccccccCCCCeEEEE-----eCCC---CeEE-Eee------ccccccccEEEeCCC------CEEEEEeCC
Q 018474 153 K-YTPTDFYKDMAEGKPYGQLRKY-----DPKL---KETT-VLH------EGFYFANGIALSKNE------DFVVVCESW 210 (355)
Q Consensus 153 ~-~~~~~~~~~~~~~~~~g~l~~~-----dp~~---~~~~-~~~------~~~~~pngi~~~~dg------~~l~v~~~~ 210 (355)
- .-..+....+-.+...|--++| ++.- .... ... .....|-|++|.... +.++++.-.
T Consensus 261 d~~~~~Deln~i~~G~nYGWP~~~~G~~~~g~~~~~~~~~~~~~~p~~~~~~h~ApsGmaFy~G~~fP~~r~~lfV~~hg 340 (399)
T COG2133 261 DALRGPDELNSIRPGKNYGWPYAYFGQNYDGRAIPDGTVVAGAIQPVYTWAPHIAPSGMAFYTGDLFPAYRGDLFVGAHG 340 (399)
T ss_pred CcccCcccccccccCCccCCceeccCcccCccccCCCcccccccCCceeeccccccceeEEecCCcCccccCcEEEEeec
Confidence 1 1122233333333333333333 1110 0000 000 111336789988531 248888876
Q ss_pred CCeEEEEEeCCCCCcceeEecc-cCCCCcCceEECCCCCEEEEeec
Q 018474 211 KFRCRRYWLKGDRAGILDAFIE-NLPGGPDNINLAPDGSFWIGLIK 255 (355)
Q Consensus 211 ~~~i~~~~~~~~~~~~~~~~~~-~~~g~p~~i~~d~~G~lwv~~~~ 255 (355)
.-.+.+.+.+++..-..+.|+. ...+.|.++++..||-|+|.+..
T Consensus 341 sw~~~~~~~~g~~~~~~~~fl~~d~~gR~~dV~v~~DGallv~~D~ 386 (399)
T COG2133 341 SWPVLRLRPDGNYKVVLTGFLSGDLGGRPRDVAVAPDGALLVLTDQ 386 (399)
T ss_pred ceeEEEeccCCCcceEEEEEEecCCCCcccceEECCCCeEEEeecC
Confidence 6667777776652222233332 23478999999999999999865
No 104
>KOG0316 consensus Conserved WD40 repeat-containing protein [Function unknown]
Probab=97.67 E-value=0.012 Score=50.28 Aligned_cols=171 Identities=13% Similarity=0.097 Sum_probs=97.2
Q ss_pred EeeCCCeEEEEecCCEEEEEEcCCCeeE-EeeccCCCcccCeEECCCCCEEEEeCC-CcEEEEc-CCC--eEEEcCCcCC
Q 018474 59 VVVSKGALYTATRDGWVKYFILHNETLV-NWKHIDSQSLLGLTTTKDGGVILCDNE-KGLLKVT-EEG--VEAIVPDASF 133 (355)
Q Consensus 59 ~d~~~g~l~~~~~~g~i~~~~~~~g~~~-~~~~~~~~p~~gl~~d~~g~L~v~~~~-~gl~~~~-~~g--~~~~~~~~~~ 133 (355)
+..+++....+..+..|..++|..|... .|...+.... ..+...|+.-+.+..+ +.+..+| .+| .+.+......
T Consensus 25 yN~dGnY~ltcGsdrtvrLWNp~rg~liktYsghG~EVl-D~~~s~Dnskf~s~GgDk~v~vwDV~TGkv~Rr~rgH~aq 103 (307)
T KOG0316|consen 25 YNVDGNYCLTCGSDRTVRLWNPLRGALIKTYSGHGHEVL-DAALSSDNSKFASCGGDKAVQVWDVNTGKVDRRFRGHLAQ 103 (307)
T ss_pred EccCCCEEEEcCCCceEEeecccccceeeeecCCCceee-eccccccccccccCCCCceEEEEEcccCeeeeecccccce
Confidence 4433444455556788888999888654 4443344444 4555445544443333 3466666 577 5666666678
Q ss_pred cccEEEccCCcEEEEeCCCCCCCccccccccccCCCCeEEEEeCCCCeEEEeeccccccccE-EEeCCCCEEEEEeCCCC
Q 018474 134 TNDVIAASDGTLYFTVASTKYTPTDFYKDMAEGKPYGQLRKYDPKLKETTVLHEGFYFANGI-ALSKNEDFVVVCESWKF 212 (355)
Q Consensus 134 ~~~l~~d~dG~ly~~d~~~~~~~~~~~~~~~~~~~~g~l~~~dp~~~~~~~~~~~~~~pngi-~~~~dg~~l~v~~~~~~ 212 (355)
+|.+.+..+-.+.++.+- .-.+-.||=.+...++++.--..-.|+ .++-.+ +.+++.+-.+
T Consensus 104 VNtV~fNeesSVv~Sgsf-----------------D~s~r~wDCRS~s~ePiQildea~D~V~Si~v~~-heIvaGS~DG 165 (307)
T KOG0316|consen 104 VNTVRFNEESSVVASGSF-----------------DSSVRLWDCRSRSFEPIQILDEAKDGVSSIDVAE-HEIVAGSVDG 165 (307)
T ss_pred eeEEEecCcceEEEeccc-----------------cceeEEEEcccCCCCccchhhhhcCceeEEEecc-cEEEeeccCC
Confidence 899998888777776443 224566666555554432111111221 233333 4778888889
Q ss_pred eEEEEEeCCCCCcceeEecccCCCCcCceEECCCCCEEEEe
Q 018474 213 RCRRYWLKGDRAGILDAFIENLPGGPDNINLAPDGSFWIGL 253 (355)
Q Consensus 213 ~i~~~~~~~~~~~~~~~~~~~~~g~p~~i~~d~~G~lwv~~ 253 (355)
++.+|++..+ +. ..+.+.--...+.+.++|+.-.+.
T Consensus 166 tvRtydiR~G---~l--~sDy~g~pit~vs~s~d~nc~La~ 201 (307)
T KOG0316|consen 166 TVRTYDIRKG---TL--SSDYFGHPITSVSFSKDGNCSLAS 201 (307)
T ss_pred cEEEEEeecc---ee--ehhhcCCcceeEEecCCCCEEEEe
Confidence 9999998532 21 222222113446789999855444
No 105
>KOG0318 consensus WD40 repeat stress protein/actin interacting protein [Cytoskeleton]
Probab=97.67 E-value=0.055 Score=51.27 Aligned_cols=177 Identities=15% Similarity=0.169 Sum_probs=102.2
Q ss_pred eEEEeeCCCeEEEEecCCEEEEEEcCCCeeEEeeccC----CCcccCeEECCCCCEEEEeCCCcEEEEcC-CC--eEEEc
Q 018474 56 DVSVVVSKGALYTATRDGWVKYFILHNETLVNWKHID----SQSLLGLTTTKDGGVILCDNEKGLLKVTE-EG--VEAIV 128 (355)
Q Consensus 56 ~i~~d~~~g~l~~~~~~g~i~~~~~~~g~~~~~~~~~----~~p~~gl~~d~~g~L~v~~~~~gl~~~~~-~g--~~~~~ 128 (355)
++.|.|+...+...+.+..+..+|..+++...-...+ ..-. |..+- +++|......+-|-.+++ +. .+++.
T Consensus 240 alsWsPDs~~~~T~SaDkt~KIWdVs~~slv~t~~~~~~v~dqqv-G~lWq-kd~lItVSl~G~in~ln~~d~~~~~~i~ 317 (603)
T KOG0318|consen 240 ALSWSPDSTQFLTVSADKTIKIWDVSTNSLVSTWPMGSTVEDQQV-GCLWQ-KDHLITVSLSGTINYLNPSDPSVLKVIS 317 (603)
T ss_pred EEEECCCCceEEEecCCceEEEEEeeccceEEEeecCCchhceEE-EEEEe-CCeEEEEEcCcEEEEecccCCChhheec
Confidence 5666666666666666776667776666543321111 2223 44453 445544443322444444 33 44444
Q ss_pred CCcCCcccEEEccCCcEEEEeCCCCCCCccccccccccCCCCeEEEEeCCCCeEEEeecc--ccccccEEEeCCCCEEEE
Q 018474 129 PDASFTNDVIAASDGTLYFTVASTKYTPTDFYKDMAEGKPYGQLRKYDPKLKETTVLHEG--FYFANGIALSKNEDFVVV 206 (355)
Q Consensus 129 ~~~~~~~~l~~d~dG~ly~~d~~~~~~~~~~~~~~~~~~~~g~l~~~dp~~~~~~~~~~~--~~~pngi~~~~dg~~l~v 206 (355)
.....+..+++.+||...++-+. .|.+..|+-.++.-..+... ...-.+++.+..+. ++-
T Consensus 318 GHnK~ITaLtv~~d~~~i~Sgsy-----------------DG~I~~W~~~~g~~~~~~g~~h~nqI~~~~~~~~~~-~~t 379 (603)
T KOG0318|consen 318 GHNKSITALTVSPDGKTIYSGSY-----------------DGHINSWDSGSGTSDRLAGKGHTNQIKGMAASESGE-LFT 379 (603)
T ss_pred ccccceeEEEEcCCCCEEEeecc-----------------CceEEEEecCCccccccccccccceEEEEeecCCCc-EEE
Confidence 44478889999999965554332 67788888766654433211 22345677776554 555
Q ss_pred EeCCCCeEEEEEeCCCCCcceeEecccCCCCcCceEECCCCCEEEEeec
Q 018474 207 CESWKFRCRRYWLKGDRAGILDAFIENLPGGPDNINLAPDGSFWIGLIK 255 (355)
Q Consensus 207 ~~~~~~~i~~~~~~~~~~~~~~~~~~~~~g~p~~i~~d~~G~lwv~~~~ 255 (355)
+. ..+.|.++++.+......+.+ .++..|.+++..++|.+-+....
T Consensus 380 ~g-~Dd~l~~~~~~~~~~t~~~~~--~lg~QP~~lav~~d~~~avv~~~ 425 (603)
T KOG0318|consen 380 IG-WDDTLRVISLKDNGYTKSEVV--KLGSQPKGLAVLSDGGTAVVACI 425 (603)
T ss_pred Ee-cCCeEEEEecccCccccccee--ecCCCceeEEEcCCCCEEEEEec
Confidence 44 678999999866544443322 35567999999998865554433
No 106
>KOG0286 consensus G-protein beta subunit [General function prediction only]
Probab=97.64 E-value=0.027 Score=49.59 Aligned_cols=151 Identities=16% Similarity=0.170 Sum_probs=100.9
Q ss_pred CCCCCCceEEEeeCCCeEEEEecCCEEEEEEcCCCeeE-EeeccCCCcccCeEECC-CCCEEEEeCCCcEEE-Ec-CCC-
Q 018474 49 GCVNHPEDVSVVVSKGALYTATRDGWVKYFILHNETLV-NWKHIDSQSLLGLTTTK-DGGVILCDNEKGLLK-VT-EEG- 123 (355)
Q Consensus 49 ~~~~~p~~i~~d~~~g~l~~~~~~g~i~~~~~~~g~~~-~~~~~~~~p~~gl~~d~-~g~L~v~~~~~gl~~-~~-~~g- 123 (355)
|.-..-.+..+- +++.+..++.|.....+|.++|+.. .|....+... ++.+.+ +++.||...-+...+ .| ..+
T Consensus 143 gHtgylScC~f~-dD~~ilT~SGD~TCalWDie~g~~~~~f~GH~gDV~-slsl~p~~~ntFvSg~cD~~aklWD~R~~~ 220 (343)
T KOG0286|consen 143 GHTGYLSCCRFL-DDNHILTGSGDMTCALWDIETGQQTQVFHGHTGDVM-SLSLSPSDGNTFVSGGCDKSAKLWDVRSGQ 220 (343)
T ss_pred CccceeEEEEEc-CCCceEecCCCceEEEEEcccceEEEEecCCcccEE-EEecCCCCCCeEEecccccceeeeeccCcc
Confidence 333344455555 5888999999999999999888654 4433345566 777777 889999764444333 34 455
Q ss_pred -eEEEcCCcCCcccEEEccCCcEEEEeCCCCCCCccccccccccCCCCeEEEEeCCCC-eEEEeecc--ccccccEEEeC
Q 018474 124 -VEAIVPDASFTNDVIAASDGTLYFTVASTKYTPTDFYKDMAEGKPYGQLRKYDPKLK-ETTVLHEG--FYFANGIALSK 199 (355)
Q Consensus 124 -~~~~~~~~~~~~~l~~d~dG~ly~~d~~~~~~~~~~~~~~~~~~~~g~l~~~dp~~~-~~~~~~~~--~~~pngi~~~~ 199 (355)
++.+......+|.+.+-|+|.-+.+.+. .+..-.||.... ++..+... ....+.++|+.
T Consensus 221 c~qtF~ghesDINsv~ffP~G~afatGSD-----------------D~tcRlyDlRaD~~~a~ys~~~~~~gitSv~FS~ 283 (343)
T KOG0286|consen 221 CVQTFEGHESDINSVRFFPSGDAFATGSD-----------------DATCRLYDLRADQELAVYSHDSIICGITSVAFSK 283 (343)
T ss_pred eeEeecccccccceEEEccCCCeeeecCC-----------------CceeEEEeecCCcEEeeeccCcccCCceeEEEcc
Confidence 7777776688999999999988887554 333444555433 44444322 34457899999
Q ss_pred CCCEEEEEeCCCCeEEEEEe
Q 018474 200 NEDFVVVCESWKFRCRRYWL 219 (355)
Q Consensus 200 dg~~l~v~~~~~~~i~~~~~ 219 (355)
-|+.||. .....++.++|.
T Consensus 284 SGRlLfa-gy~d~~c~vWDt 302 (343)
T KOG0286|consen 284 SGRLLFA-GYDDFTCNVWDT 302 (343)
T ss_pred cccEEEe-eecCCceeEeec
Confidence 9995554 456678888874
No 107
>KOG0275 consensus Conserved WD40 repeat-containing protein [General function prediction only]
Probab=97.63 E-value=0.00089 Score=59.30 Aligned_cols=225 Identities=18% Similarity=0.248 Sum_probs=119.8
Q ss_pred ceEEEeeCCCeEEEEecCCEEEEEEcCCCee-EEeecc-CCCcccCeEECCCCCEEEEeCCCcEEEEc--CCC--eEEEc
Q 018474 55 EDVSVVVSKGALYTATRDGWVKYFILHNETL-VNWKHI-DSQSLLGLTTTKDGGVILCDNEKGLLKVT--EEG--VEAIV 128 (355)
Q Consensus 55 ~~i~~d~~~g~l~~~~~~g~i~~~~~~~g~~-~~~~~~-~~~p~~gl~~d~~g~L~v~~~~~gl~~~~--~~g--~~~~~ 128 (355)
-+|.+.++..-+-.|+.+|.|..+...+|.- ++|... .-... ++.+.+|+.-......+..+|+. +.| ++.+.
T Consensus 267 lci~FSRDsEMlAsGsqDGkIKvWri~tG~ClRrFdrAHtkGvt-~l~FSrD~SqiLS~sfD~tvRiHGlKSGK~LKEfr 345 (508)
T KOG0275|consen 267 LCISFSRDSEMLASGSQDGKIKVWRIETGQCLRRFDRAHTKGVT-CLSFSRDNSQILSASFDQTVRIHGLKSGKCLKEFR 345 (508)
T ss_pred EEEeecccHHHhhccCcCCcEEEEEEecchHHHHhhhhhccCee-EEEEccCcchhhcccccceEEEeccccchhHHHhc
Confidence 3444543344445566677776666656642 222111 11244 67888887655555566677876 456 66665
Q ss_pred CCcCCcccEEEccCCcEEEEeCCCCCCCccccccccccCCCCeEEEEeCCCCeE-EEe---eccccccccEEEeCCCCEE
Q 018474 129 PDASFTNDVIAASDGTLYFTVASTKYTPTDFYKDMAEGKPYGQLRKYDPKLKET-TVL---HEGFYFANGIALSKNEDFV 204 (355)
Q Consensus 129 ~~~~~~~~l~~d~dG~ly~~d~~~~~~~~~~~~~~~~~~~~g~l~~~dp~~~~~-~~~---~~~~~~pngi~~~~dg~~l 204 (355)
....++|+..+.+||.-.++-++ .|.+-.|+.++.+- ..+ .++....+-+-+-++-.++
T Consensus 346 GHsSyvn~a~ft~dG~~iisaSs-----------------DgtvkvW~~KtteC~~Tfk~~~~d~~vnsv~~~PKnpeh~ 408 (508)
T KOG0275|consen 346 GHSSYVNEATFTDDGHHIISASS-----------------DGTVKVWHGKTTECLSTFKPLGTDYPVNSVILLPKNPEHF 408 (508)
T ss_pred CccccccceEEcCCCCeEEEecC-----------------CccEEEecCcchhhhhhccCCCCcccceeEEEcCCCCceE
Confidence 55589999999999976666544 45566666554431 111 1222212222333334467
Q ss_pred EEEeCCCCeEEEEEeCCCCCcceeEecccC--CCCcCceEECCCCCEEEEeecCCchhhHhhhcchhHHHHHHhccchhh
Q 018474 205 VVCESWKFRCRRYWLKGDRAGILDAFIENL--PGGPDNINLAPDGSFWIGLIKMNQTGVRAIQKCREKWELLDAYPGLIS 282 (355)
Q Consensus 205 ~v~~~~~~~i~~~~~~~~~~~~~~~~~~~~--~g~p~~i~~d~~G~lwv~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 282 (355)
++|+. .+.|+..++.|.- .+.|..+. .|---+.+.++.|. |+=+.+
T Consensus 409 iVCNr-sntv~imn~qGQv---VrsfsSGkREgGdFi~~~lSpkGe-wiYcig--------------------------- 456 (508)
T KOG0275|consen 409 IVCNR-SNTVYIMNMQGQV---VRSFSSGKREGGDFINAILSPKGE-WIYCIG--------------------------- 456 (508)
T ss_pred EEEcC-CCeEEEEeccceE---EeeeccCCccCCceEEEEecCCCc-EEEEEc---------------------------
Confidence 77774 5678888876532 22222111 11111234667774 222222
Q ss_pred cccCCCCCCceEEEEEeCCCCeEEEEEECCCCCcccceeEEEEeCCEEEEeecCCCeEE
Q 018474 283 LLLPMGSDAGARVVKVDGNDGKIIRDFNDPDATYISFVTSAAEFDGNLYLASLQSNFIG 341 (355)
Q Consensus 283 ~~~~~~~~~~~~v~~~~~~~g~~~~~~~~~~g~~~~~~~~~~~~~g~L~v~~~~~~~i~ 341 (355)
+.+-+++|+-..|+....+...+- .+.++..+..+=.+.++..+.+.
T Consensus 457 --------ED~vlYCF~~~sG~LE~tl~VhEk----dvIGl~HHPHqNllAsYsEDgll 503 (508)
T KOG0275|consen 457 --------EDGVLYCFSVLSGKLERTLPVHEK----DVIGLTHHPHQNLLASYSEDGLL 503 (508)
T ss_pred --------cCcEEEEEEeecCceeeeeecccc----cccccccCcccchhhhhcccchh
Confidence 114578887667887766665443 23334444445455555555443
No 108
>KOG1274 consensus WD40 repeat protein [General function prediction only]
Probab=97.58 E-value=0.038 Score=55.57 Aligned_cols=152 Identities=8% Similarity=0.070 Sum_probs=87.9
Q ss_pred CCCCceEEEeeCCCeEEEEecCCEEEEEEcCCC--eeEEeeccCCCcccCeEECCCCCEEEEeCCCcEEEEc-CCC-eEE
Q 018474 51 VNHPEDVSVVVSKGALYTATRDGWVKYFILHNE--TLVNWKHIDSQSLLGLTTTKDGGVILCDNEKGLLKVT-EEG-VEA 126 (355)
Q Consensus 51 ~~~p~~i~~d~~~g~l~~~~~~g~i~~~~~~~g--~~~~~~~~~~~p~~gl~~d~~g~L~v~~~~~gl~~~~-~~g-~~~ 126 (355)
..|-..|.+|+++..++++..+|-|..++.... ....+...+.... +++.+. +.+..++..+-+.+|. +.+ ...
T Consensus 13 t~G~t~i~~d~~gefi~tcgsdg~ir~~~~~sd~e~P~ti~~~g~~v~-~ia~~s-~~f~~~s~~~tv~~y~fps~~~~~ 90 (933)
T KOG1274|consen 13 TGGLTLICYDPDGEFICTCGSDGDIRKWKTNSDEEEPETIDISGELVS-SIACYS-NHFLTGSEQNTVLRYKFPSGEEDT 90 (933)
T ss_pred cCceEEEEEcCCCCEEEEecCCCceEEeecCCcccCCchhhccCceeE-EEeecc-cceEEeeccceEEEeeCCCCCccc
Confidence 355678999988888888888998888875332 2222111223344 666653 3555555444455554 344 332
Q ss_pred EcCCc-CCcccEEEccCCcEEEEeCCCCCCCccccccccccCCCCeEEEEeCCCCeEEEeecccccc-ccEEEeCCCCEE
Q 018474 127 IVPDA-SFTNDVIAASDGTLYFTVASTKYTPTDFYKDMAEGKPYGQLRKYDPKLKETTVLHEGFYFA-NGIALSKNEDFV 204 (355)
Q Consensus 127 ~~~~~-~~~~~l~~d~dG~ly~~d~~~~~~~~~~~~~~~~~~~~g~l~~~dp~~~~~~~~~~~~~~p-ngi~~~~dg~~l 204 (355)
+..++ .-+++++++.+|+..++.+. .-.|-..+..+...+....+...| -++.++|++++|
T Consensus 91 iL~Rftlp~r~~~v~g~g~~iaagsd-----------------D~~vK~~~~~D~s~~~~lrgh~apVl~l~~~p~~~fL 153 (933)
T KOG1274|consen 91 ILARFTLPIRDLAVSGSGKMIAAGSD-----------------DTAVKLLNLDDSSQEKVLRGHDAPVLQLSYDPKGNFL 153 (933)
T ss_pred eeeeeeccceEEEEecCCcEEEeecC-----------------ceeEEEEeccccchheeecccCCceeeeeEcCCCCEE
Confidence 22222 34778899999976655433 112333333333333333344333 468899999976
Q ss_pred EEEeCCCCeEEEEEeCCC
Q 018474 205 VVCESWKFRCRRYWLKGD 222 (355)
Q Consensus 205 ~v~~~~~~~i~~~~~~~~ 222 (355)
-++. ..+.|..|+++..
T Consensus 154 Avss-~dG~v~iw~~~~~ 170 (933)
T KOG1274|consen 154 AVSS-CDGKVQIWDLQDG 170 (933)
T ss_pred EEEe-cCceEEEEEcccc
Confidence 6665 5688999998653
No 109
>PLN00181 protein SPA1-RELATED; Provisional
Probab=97.55 E-value=0.15 Score=53.17 Aligned_cols=149 Identities=12% Similarity=0.020 Sum_probs=87.1
Q ss_pred CceEEEeeCCCeEEEEecCCEEEEEEcCCC----eeE----EeeccCCCcccCeEECCC-CCEEEEeCCCcEEEE-c-CC
Q 018474 54 PEDVSVVVSKGALYTATRDGWVKYFILHNE----TLV----NWKHIDSQSLLGLTTTKD-GGVILCDNEKGLLKV-T-EE 122 (355)
Q Consensus 54 p~~i~~d~~~g~l~~~~~~g~i~~~~~~~g----~~~----~~~~~~~~p~~gl~~d~~-g~L~v~~~~~gl~~~-~-~~ 122 (355)
-.++++++++..+.++..++.|..++..+. ... .......... ++++.+. ++..++...+|.+++ + .+
T Consensus 486 V~~i~fs~dg~~latgg~D~~I~iwd~~~~~~~~~~~~~~~~~~~~~~~v~-~l~~~~~~~~~las~~~Dg~v~lWd~~~ 564 (793)
T PLN00181 486 VCAIGFDRDGEFFATAGVNKKIKIFECESIIKDGRDIHYPVVELASRSKLS-GICWNSYIKSQVASSNFEGVVQVWDVAR 564 (793)
T ss_pred EEEEEECCCCCEEEEEeCCCEEEEEECCcccccccccccceEEecccCcee-eEEeccCCCCEEEEEeCCCeEEEEECCC
Confidence 456888866666777888999998886321 110 0011112345 6777653 454444444555544 5 34
Q ss_pred C--eEEEcCCcCCcccEEEcc-CCcEEEEeCCCCCCCccccccccccCCCCeEEEEeCCCCeEEEeeccccccccEEEe-
Q 018474 123 G--VEAIVPDASFTNDVIAAS-DGTLYFTVASTKYTPTDFYKDMAEGKPYGQLRKYDPKLKETTVLHEGFYFANGIALS- 198 (355)
Q Consensus 123 g--~~~~~~~~~~~~~l~~d~-dG~ly~~d~~~~~~~~~~~~~~~~~~~~g~l~~~dp~~~~~~~~~~~~~~pngi~~~- 198 (355)
+ +..+......+.++++++ +|.++++.+. .+.+..||..+++.............+++.
T Consensus 565 ~~~~~~~~~H~~~V~~l~~~p~~~~~L~Sgs~-----------------Dg~v~iWd~~~~~~~~~~~~~~~v~~v~~~~ 627 (793)
T PLN00181 565 SQLVTEMKEHEKRVWSIDYSSADPTLLASGSD-----------------DGSVKLWSINQGVSIGTIKTKANICCVQFPS 627 (793)
T ss_pred CeEEEEecCCCCCEEEEEEcCCCCCEEEEEcC-----------------CCEEEEEECCCCcEEEEEecCCCeEEEEEeC
Confidence 4 444444346788999986 6777776543 567888887665432222222233455664
Q ss_pred CCCCEEEEEeCCCCeEEEEEeCC
Q 018474 199 KNEDFVVVCESWKFRCRRYWLKG 221 (355)
Q Consensus 199 ~dg~~l~v~~~~~~~i~~~~~~~ 221 (355)
++++ .+++....+.|..|++..
T Consensus 628 ~~g~-~latgs~dg~I~iwD~~~ 649 (793)
T PLN00181 628 ESGR-SLAFGSADHKVYYYDLRN 649 (793)
T ss_pred CCCC-EEEEEeCCCeEEEEECCC
Confidence 4566 455556678899999854
No 110
>cd00216 PQQ_DH Dehydrogenases with pyrrolo-quinoline quinone (PQQ) as cofactor, like ethanol, methanol, and membrane bound glucose dehydrogenases. The alignment model contains an 8-bladed beta-propeller.
Probab=97.54 E-value=0.1 Score=51.02 Aligned_cols=254 Identities=9% Similarity=-0.001 Sum_probs=124.9
Q ss_pred CeEEEEecCCEEEEEEcCCCeeEEeeccCCC------cccCeEECCCCCEEEEeC---------CCcEEEEcC-CC-eEE
Q 018474 64 GALYTATRDGWVKYFILHNETLVNWKHIDSQ------SLLGLTTTKDGGVILCDN---------EKGLLKVTE-EG-VEA 126 (355)
Q Consensus 64 g~l~~~~~~g~i~~~~~~~g~~~~~~~~~~~------p~~gl~~d~~g~L~v~~~---------~~gl~~~~~-~g-~~~ 126 (355)
+.+|+++.+|.|+.+|.++|+..--...... ...+..++ ++.+|++.. .+.++.+|. +| ..-
T Consensus 111 ~~V~v~~~~g~v~AlD~~TG~~~W~~~~~~~~~~~~~i~ssP~v~-~~~v~vg~~~~~~~~~~~~g~v~alD~~TG~~~W 189 (488)
T cd00216 111 RKVFFGTFDGRLVALDAETGKQVWKFGNNDQVPPGYTMTGAPTIV-KKLVIIGSSGAEFFACGVRGALRAYDVETGKLLW 189 (488)
T ss_pred CeEEEecCCCeEEEEECCCCCEeeeecCCCCcCcceEecCCCEEE-CCEEEEeccccccccCCCCcEEEEEECCCCceee
Confidence 7999999999999999999975422221111 11023343 477888653 235888884 77 221
Q ss_pred ---EcCCc--C-----------------CcccEEEcc-CCcEEEEeCCCCCCCccccccccccCCCCeEEEEeCCCCeEE
Q 018474 127 ---IVPDA--S-----------------FTNDVIAAS-DGTLYFTVASTKYTPTDFYKDMAEGKPYGQLRKYDPKLKETT 183 (355)
Q Consensus 127 ---~~~~~--~-----------------~~~~l~~d~-dG~ly~~d~~~~~~~~~~~~~~~~~~~~g~l~~~dp~~~~~~ 183 (355)
..... . .-...++|+ .|.+|+......................+.++.+|.++|+..
T Consensus 190 ~~~~~~~~~~~~~~~~~~~~~~~~~g~~vw~~pa~d~~~g~V~vg~~~g~~~~~~~~~~~~~~~~~~~l~Ald~~tG~~~ 269 (488)
T cd00216 190 RFYTTEPDPNAFPTWGPDRQMWGPGGGTSWASPTYDPKTNLVYVGTGNGSPWNWGGRRTPGDNLYTDSIVALDADTGKVK 269 (488)
T ss_pred EeeccCCCcCCCCCCCCCcceecCCCCCccCCeeEeCCCCEEEEECCCCCCCccCCccCCCCCCceeeEEEEcCCCCCEE
Confidence 11110 0 002356674 568999865421000000000011123458999999999876
Q ss_pred Eeeccc-------cccccEEEe----CCCC--EEEEEeCCCCeEEEEEeCCCC-CcceeEecccCCCCcCceEECCCCCE
Q 018474 184 VLHEGF-------YFANGIALS----KNED--FVVVCESWKFRCRRYWLKGDR-AGILDAFIENLPGGPDNINLAPDGSF 249 (355)
Q Consensus 184 ~~~~~~-------~~pngi~~~----~dg~--~l~v~~~~~~~i~~~~~~~~~-~~~~~~~~~~~~g~p~~i~~d~~G~l 249 (355)
...+.. ..+....+. -|+. .++++.+..++++.++.++.+ .-+.+.. -.++..++ +.+
T Consensus 270 W~~~~~~~~~~~~~~~s~p~~~~~~~~~g~~~~~V~~g~~~G~l~ald~~tG~~~W~~~~~-------~~~~~~~~-~~v 341 (488)
T cd00216 270 WFYQTTPHDLWDYDGPNQPSLADIKPKDGKPVPAIVHAPKNGFFYVLDRTTGKLISARPEV-------EQPMAYDP-GLV 341 (488)
T ss_pred EEeeCCCCCCcccccCCCCeEEeccccCCCeeEEEEEECCCceEEEEECCCCcEeeEeEee-------ccccccCC-ceE
Confidence 553211 111111111 2333 233334456789999985432 2222211 12234444 678
Q ss_pred EEEeecCCchhhHhhhcchhHHHHHHhccchhhcccCCCCCCceEEEEEeCCCCeEEEEEECCCCC------cccceeEE
Q 018474 250 WIGLIKMNQTGVRAIQKCREKWELLDAYPGLISLLLPMGSDAGARVVKVDGNDGKIIRDFNDPDAT------YISFVTSA 323 (355)
Q Consensus 250 wv~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~g~~~~~~~~~~g~------~~~~~~~~ 323 (355)
|++........ ... .. .+ ......+.+..+|.++|+.+=........ .......+
T Consensus 342 yv~~~~~~~~~----~~~---~~----~~--------~~~~~~G~l~AlD~~tG~~~W~~~~~~~~~~~~~g~~~~~~~~ 402 (488)
T cd00216 342 YLGAFHIPLGL----PPQ---KK----KR--------CKKPGKGGLAALDPKTGKVVWEKREGTIRDSWNIGFPHWGGSL 402 (488)
T ss_pred EEccccccccC----ccc---cc----CC--------CCCCCceEEEEEeCCCCcEeeEeeCCccccccccCCcccCcce
Confidence 88653210000 000 00 00 00133478999998788865444332100 00112234
Q ss_pred EEeCCEEEEeecCCCeEEEeeCC
Q 018474 324 AEFDGNLYLASLQSNFIGILPLD 346 (355)
Q Consensus 324 ~~~~g~L~v~~~~~~~i~~~~~~ 346 (355)
...++.||+++. ..+|.-++..
T Consensus 403 ~~~g~~v~~g~~-dG~l~ald~~ 424 (488)
T cd00216 403 ATAGNLVFAGAA-DGYFRAFDAT 424 (488)
T ss_pred EecCCeEEEECC-CCeEEEEECC
Confidence 556678888874 5667666653
No 111
>KOG0271 consensus Notchless-like WD40 repeat-containing protein [Function unknown]
Probab=97.53 E-value=0.0041 Score=56.45 Aligned_cols=186 Identities=15% Similarity=0.168 Sum_probs=111.7
Q ss_pred eEecCCCCCCCceEEEeeCCCeEEEEecCCEEEEEEcCCCeeEEeecc-CCCcccCe-----------EECC--------
Q 018474 44 TKLGEGCVNHPEDVSVVVSKGALYTATRDGWVKYFILHNETLVNWKHI-DSQSLLGL-----------TTTK-------- 103 (355)
Q Consensus 44 ~~~~~~~~~~p~~i~~d~~~g~l~~~~~~g~i~~~~~~~g~~~~~~~~-~~~p~~gl-----------~~d~-------- 103 (355)
.+...|.-..-.++.+. .+|.+|.++.|+.|..++..+|+.-+.... ...++ .| ++|+
T Consensus 240 ~~~lsgHT~~VTCvrwG-G~gliySgS~DrtIkvw~a~dG~~~r~lkGHahwvN-~lalsTdy~LRtgaf~~t~~~~~~~ 317 (480)
T KOG0271|consen 240 VRTLSGHTASVTCVRWG-GEGLIYSGSQDRTIKVWRALDGKLCRELKGHAHWVN-HLALSTDYVLRTGAFDHTGRKPKSF 317 (480)
T ss_pred EEEeccCccceEEEEEc-CCceEEecCCCceEEEEEccchhHHHhhcccchhee-eeeccchhhhhccccccccccCCCh
Confidence 34445666667788887 789999999999999998877753221110 00011 11 1111
Q ss_pred -----------------CCCEEEEeCCC-cEEEEcCCC----eEEEcCCcCCcccEEEccCCcEEEEeCCCCCCCccccc
Q 018474 104 -----------------DGGVILCDNEK-GLLKVTEEG----VEAIVPDASFTNDVIAASDGTLYFTVASTKYTPTDFYK 161 (355)
Q Consensus 104 -----------------~g~L~v~~~~~-gl~~~~~~g----~~~~~~~~~~~~~l~~d~dG~ly~~d~~~~~~~~~~~~ 161 (355)
.|.-.|....+ -++..++.. ++.+......+|++.++|||+...+-+-
T Consensus 318 se~~~~Al~rY~~~~~~~~erlVSgsDd~tlflW~p~~~kkpi~rmtgHq~lVn~V~fSPd~r~IASaSF---------- 387 (480)
T KOG0271|consen 318 SEEQKKALERYEAVLKDSGERLVSGSDDFTLFLWNPFKSKKPITRMTGHQALVNHVSFSPDGRYIASASF---------- 387 (480)
T ss_pred HHHHHHHHHHHHHhhccCcceeEEecCCceEEEecccccccchhhhhchhhheeeEEECCCccEEEEeec----------
Confidence 22224433333 355555322 4444444578999999999976655332
Q ss_pred cccccCCCCeEEEEeCCCCeEEEeecc-ccccccEEEeCCCCEEEEEeCCCCeEEEEEeCCCCCcceeEecccCCCCcCc
Q 018474 162 DMAEGKPYGQLRKYDPKLKETTVLHEG-FYFANGIALSKNEDFVVVCESWKFRCRRYWLKGDRAGILDAFIENLPGGPDN 240 (355)
Q Consensus 162 ~~~~~~~~g~l~~~dp~~~~~~~~~~~-~~~pngi~~~~dg~~l~v~~~~~~~i~~~~~~~~~~~~~~~~~~~~~g~p~~ 240 (355)
...+-.||..+|++-.-..+ ...-.-++.+.|.+ |+++.+....|-.++++..+ +...+||..|.
T Consensus 388 -------DkSVkLW~g~tGk~lasfRGHv~~VYqvawsaDsR-LlVS~SkDsTLKvw~V~tkK------l~~DLpGh~DE 453 (480)
T KOG0271|consen 388 -------DKSVKLWDGRTGKFLASFRGHVAAVYQVAWSADSR-LLVSGSKDSTLKVWDVRTKK------LKQDLPGHADE 453 (480)
T ss_pred -------ccceeeeeCCCcchhhhhhhccceeEEEEeccCcc-EEEEcCCCceEEEEEeeeee------ecccCCCCCce
Confidence 22455566667765332222 23335689999987 88988888899999985432 23367777776
Q ss_pred eE-E--CCCCCEEEEeec
Q 018474 241 IN-L--APDGSFWIGLIK 255 (355)
Q Consensus 241 i~-~--d~~G~lwv~~~~ 255 (355)
+. + .+||..-++...
T Consensus 454 Vf~vDwspDG~rV~sggk 471 (480)
T KOG0271|consen 454 VFAVDWSPDGQRVASGGK 471 (480)
T ss_pred EEEEEecCCCceeecCCC
Confidence 53 3 478876665543
No 112
>COG3823 Glutamine cyclotransferase [Posttranslational modification, protein turnover, chaperones]
Probab=97.52 E-value=0.0091 Score=50.11 Aligned_cols=39 Identities=18% Similarity=0.261 Sum_probs=30.2
Q ss_pred CeEEEEeCCCCeEEEeec-------------cccccccEEEeCCCCEEEEEe
Q 018474 170 GQLRKYDPKLKETTVLHE-------------GFYFANGIALSKNEDFVVVCE 208 (355)
Q Consensus 170 g~l~~~dp~~~~~~~~~~-------------~~~~pngi~~~~dg~~l~v~~ 208 (355)
.++.|++|++|++....+ ....+||||..|+++.+|++.
T Consensus 196 ~~I~rI~p~sGrV~~widlS~L~~~~~~~~~~~nvlNGIA~~~~~~r~~iTG 247 (262)
T COG3823 196 TRIARIDPDSGRVVAWIDLSGLLKELNLDKSNDNVLNGIAHDPQQDRFLITG 247 (262)
T ss_pred cceEEEcCCCCcEEEEEEccCCchhcCccccccccccceeecCcCCeEEEec
Confidence 478899999998765532 123589999999998899875
No 113
>COG1520 FOG: WD40-like repeat [Function unknown]
Probab=97.51 E-value=0.054 Score=50.90 Aligned_cols=139 Identities=17% Similarity=0.118 Sum_probs=81.4
Q ss_pred EeeCCCeEEEEecCCEEEEEEcCCCeeEEeecc-C---CCcccCeEECCCCCEEEEeCCCcEEEEcC-CC-eEEEcCCcC
Q 018474 59 VVVSKGALYTATRDGWVKYFILHNETLVNWKHI-D---SQSLLGLTTTKDGGVILCDNEKGLLKVTE-EG-VEAIVPDAS 132 (355)
Q Consensus 59 ~d~~~g~l~~~~~~g~i~~~~~~~g~~~~~~~~-~---~~p~~gl~~d~~g~L~v~~~~~gl~~~~~-~g-~~~~~~~~~ 132 (355)
.+ .++.+|+++.+|.|+.+|+.+++.. |... . .... +-....+|++|+++..+.+++++. +| .........
T Consensus 65 ~~-~dg~v~~~~~~G~i~A~d~~~g~~~-W~~~~~~~~~~~~-~~~~~~~G~i~~g~~~g~~y~ld~~~G~~~W~~~~~~ 141 (370)
T COG1520 65 AD-GDGTVYVGTRDGNIFALNPDTGLVK-WSYPLLGAVAQLS-GPILGSDGKIYVGSWDGKLYALDASTGTLVWSRNVGG 141 (370)
T ss_pred Ee-eCCeEEEecCCCcEEEEeCCCCcEE-ecccCcCcceecc-CceEEeCCeEEEecccceEEEEECCCCcEEEEEecCC
Confidence 44 6889999999999999999888743 2111 1 1222 222334899999997755999996 78 332211111
Q ss_pred --CcccEEEccCCcEEEEeCCCCCCCccccccccccCCCCeEEEEeCCCCeEEEeec-----cccccccEEEeCCCCEEE
Q 018474 133 --FTNDVIAASDGTLYFTVASTKYTPTDFYKDMAEGKPYGQLRKYDPKLKETTVLHE-----GFYFANGIALSKNEDFVV 205 (355)
Q Consensus 133 --~~~~l~~d~dG~ly~~d~~~~~~~~~~~~~~~~~~~~g~l~~~dp~~~~~~~~~~-----~~~~pngi~~~~dg~~l~ 205 (355)
...+-.+-.++.+|+.+. .+.++.+|+++++.....+ ......... ..++ .+|
T Consensus 142 ~~~~~~~~v~~~~~v~~~s~------------------~g~~~al~~~tG~~~W~~~~~~~~~~~~~~~~~-~~~~-~vy 201 (370)
T COG1520 142 SPYYASPPVVGDGTVYVGTD------------------DGHLYALNADTGTLKWTYETPAPLSLSIYGSPA-IASG-TVY 201 (370)
T ss_pred CeEEecCcEEcCcEEEEecC------------------CCeEEEEEccCCcEEEEEecCCccccccccCce-eecc-eEE
Confidence 111223445778887631 4578888888786643321 111111122 3344 377
Q ss_pred EEeCC-CCeEEEEEeC
Q 018474 206 VCESW-KFRCRRYWLK 220 (355)
Q Consensus 206 v~~~~-~~~i~~~~~~ 220 (355)
+.... ...++.++.+
T Consensus 202 ~~~~~~~~~~~a~~~~ 217 (370)
T COG1520 202 VGSDGYDGILYALNAE 217 (370)
T ss_pred EecCCCcceEEEEEcc
Confidence 77543 4478888874
No 114
>KOG0263 consensus Transcription initiation factor TFIID, subunit TAF5 (also component of histone acetyltransferase SAGA) [Transcription]
Probab=97.51 E-value=0.0068 Score=59.60 Aligned_cols=182 Identities=11% Similarity=0.057 Sum_probs=108.6
Q ss_pred eEEEeeCCCeEEEEecCCEEEEEEcCCCeeEEeeccCCCcccCeEECCCCCEEEEeCCCcEEEEc---CCC-eEEEcCCc
Q 018474 56 DVSVVVSKGALYTATRDGWVKYFILHNETLVNWKHIDSQSLLGLTTTKDGGVILCDNEKGLLKVT---EEG-VEAIVPDA 131 (355)
Q Consensus 56 ~i~~d~~~g~l~~~~~~g~i~~~~~~~g~~~~~~~~~~~p~~gl~~d~~g~L~v~~~~~gl~~~~---~~g-~~~~~~~~ 131 (355)
+..+.|+.+.|..+++|+.+..+...+..-.........|.-.+.+.|.|.-|++.++++..++. ... .+.++...
T Consensus 456 g~sFsPd~rfLlScSED~svRLWsl~t~s~~V~y~GH~~PVwdV~F~P~GyYFatas~D~tArLWs~d~~~PlRifaghl 535 (707)
T KOG0263|consen 456 GCSFSPDRRFLLSCSEDSSVRLWSLDTWSCLVIYKGHLAPVWDVQFAPRGYYFATASHDQTARLWSTDHNKPLRIFAGHL 535 (707)
T ss_pred eeeecccccceeeccCCcceeeeecccceeEEEecCCCcceeeEEecCCceEEEecCCCceeeeeecccCCchhhhcccc
Confidence 34455556666667778877777765554333223333343045566666555544445555554 223 55566666
Q ss_pred CCcccEEEccCCcEEEEeCCCCCCCccccccccccCCCCeEEEEeCCCCeEEEeecccccc-ccEEEeCCCCEEEEEeCC
Q 018474 132 SFTNDVIAASDGTLYFTVASTKYTPTDFYKDMAEGKPYGQLRKYDPKLKETTVLHEGFYFA-NGIALSKNEDFVVVCESW 210 (355)
Q Consensus 132 ~~~~~l~~d~dG~ly~~d~~~~~~~~~~~~~~~~~~~~g~l~~~dp~~~~~~~~~~~~~~p-ngi~~~~dg~~l~v~~~~ 210 (355)
..+..+.+.|+.+..+|.++ .-.+-.||-.+|....+..+...| ..++++|+|++| .+...
T Consensus 536 sDV~cv~FHPNs~Y~aTGSs-----------------D~tVRlWDv~~G~~VRiF~GH~~~V~al~~Sp~Gr~L-aSg~e 597 (707)
T KOG0263|consen 536 SDVDCVSFHPNSNYVATGSS-----------------DRTVRLWDVSTGNSVRIFTGHKGPVTALAFSPCGRYL-ASGDE 597 (707)
T ss_pred cccceEEECCcccccccCCC-----------------CceEEEEEcCCCcEEEEecCCCCceEEEEEcCCCceE-eeccc
Confidence 77888889998876666544 224555666566554444444333 468999999855 44445
Q ss_pred CCeEEEEEeCCCCCcceeEecccCCCCcCceEECCCCCEEEEeecCCc
Q 018474 211 KFRCRRYWLKGDRAGILDAFIENLPGGPDNINLAPDGSFWIGLIKMNQ 258 (355)
Q Consensus 211 ~~~i~~~~~~~~~~~~~~~~~~~~~g~p~~i~~d~~G~lwv~~~~~~~ 258 (355)
.+.|..||+.+.+. ...+.+. .+..+.+.+..+|+++++..+..+
T Consensus 598 d~~I~iWDl~~~~~--v~~l~~H-t~ti~SlsFS~dg~vLasgg~Dns 642 (707)
T KOG0263|consen 598 DGLIKIWDLANGSL--VKQLKGH-TGTIYSLSFSRDGNVLASGGADNS 642 (707)
T ss_pred CCcEEEEEcCCCcc--hhhhhcc-cCceeEEEEecCCCEEEecCCCCe
Confidence 67888888854321 1112222 445567889999999999877654
No 115
>TIGR03032 conserved hypothetical protein TIGR03032. This protein family is uncharacterized. A number of motifs are conserved perfectly among all member sequences. The function of this protein is unknown.
Probab=97.50 E-value=0.035 Score=49.80 Aligned_cols=203 Identities=20% Similarity=0.210 Sum_probs=105.2
Q ss_pred EEEEec-CCEEEEEEcC-CCeeEEeeccCCCcccCeEECCCCCEEEEeCCCcEEEE---c--C-CC-e-----EEEc---
Q 018474 66 LYTATR-DGWVKYFILH-NETLVNWKHIDSQSLLGLTTTKDGGVILCDNEKGLLKV---T--E-EG-V-----EAIV--- 128 (355)
Q Consensus 66 l~~~~~-~g~i~~~~~~-~g~~~~~~~~~~~p~~gl~~d~~g~L~v~~~~~gl~~~---~--~-~g-~-----~~~~--- 128 (355)
|-++++ .|+++.+..+ +|++......-.+|- |++.. .++||+++.. .|+++ + . .+ . ..+.
T Consensus 20 la~sTYQagkL~~ig~~~~g~l~~~~r~F~r~M-Gl~~~-~~~l~~~t~~-qiw~f~~~~n~l~~~~~~~~~D~~yvPr~ 96 (335)
T TIGR03032 20 LAVTTYQAGKLFFIGLQPNGELDVFERTFPRPM-GLAVS-PQSLTLGTRY-QLWRFANVDNLLPAGQTHPGYDRLYVPRA 96 (335)
T ss_pred EEEEeeecceEEEEEeCCCCcEEEEeeccCccc-eeeee-CCeEEEEEcc-eeEEcccccccccccccCCCCCeEEeeee
Confidence 444443 4666666433 565555444446677 88885 5689999854 67777 2 0 11 0 0011
Q ss_pred ---CCcCCcccEEEccCCcEEEEeCCCCCCCccccccccccCCCCeEEEEeCCCCeEEEe----------eccccccccE
Q 018474 129 ---PDASFTNDVIAASDGTLYFTVASTKYTPTDFYKDMAEGKPYGQLRKYDPKLKETTVL----------HEGFYFANGI 195 (355)
Q Consensus 129 ---~~~~~~~~l~~d~dG~ly~~d~~~~~~~~~~~~~~~~~~~~g~l~~~dp~~~~~~~~----------~~~~~~pngi 195 (355)
...-.++++++ .++.+||.++. | ..+-.+++. ..+... .++-..=||+
T Consensus 97 ~~~TGdidiHdia~-~~~~l~fVNT~--f---------------SCLatl~~~-~SF~P~WkPpFIs~la~eDRCHLNGl 157 (335)
T TIGR03032 97 SYVTGDIDAHDLAL-GAGRLLFVNTL--F---------------SCLATVSPD-YSFVPLWKPPFISKLAPEDRCHLNGM 157 (335)
T ss_pred eeeccCcchhheee-cCCcEEEEECc--c---------------eeEEEECCC-CccccccCCccccccCccCceeecce
Confidence 11156788888 67788887754 1 234444432 222111 1122345899
Q ss_pred EEeCCCCEEEEEeCCCCeEEEEEeCCCCCcc-------eeEecccCCCCcCceEECCCCCEEEEeecCCchhhHhhhcch
Q 018474 196 ALSKNEDFVVVCESWKFRCRRYWLKGDRAGI-------LDAFIENLPGGPDNINLAPDGSFWIGLIKMNQTGVRAIQKCR 268 (355)
Q Consensus 196 ~~~~dg~~l~v~~~~~~~i~~~~~~~~~~~~-------~~~~~~~~~g~p~~i~~d~~G~lwv~~~~~~~~~~~~~~~~~ 268 (355)
|+. ||+--|++......+-.-|-+....+. -+++++++ .+|.+-.. -+|++|+.....
T Consensus 158 A~~-~g~p~yVTa~~~sD~~~gWR~~~~~gG~vidv~s~evl~~GL-smPhSPRW-hdgrLwvldsgt------------ 222 (335)
T TIGR03032 158 ALD-DGEPRYVTALSQSDVADGWREGRRDGGCVIDIPSGEVVASGL-SMPHSPRW-YQGKLWLLNSGR------------ 222 (335)
T ss_pred eee-CCeEEEEEEeeccCCcccccccccCCeEEEEeCCCCEEEcCc-cCCcCCcE-eCCeEEEEECCC------------
Confidence 994 677788776433211111111110111 12222222 23444333 468999998652
Q ss_pred hHHHHHHhccchhhcccCCCCCCceEEEEEeCCCCeEEEEEECCCCCcccceeEEEEeCCEEEEee
Q 018474 269 EKWELLDAYPGLISLLLPMGSDAGARVVKVDGNDGKIIRDFNDPDATYISFVTSAAEFDGNLYLAS 334 (355)
Q Consensus 269 ~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~g~~~~~~~~~~g~~~~~~~~~~~~~g~L~v~~ 334 (355)
+.+.++|+++|+....-.-| | ...++...++.+++|-
T Consensus 223 ------------------------Gev~~vD~~~G~~e~Va~vp-G----~~rGL~f~G~llvVgm 259 (335)
T TIGR03032 223 ------------------------GELGYVDPQAGKFQPVAFLP-G----FTRGLAFAGDFAFVGL 259 (335)
T ss_pred ------------------------CEEEEEcCCCCcEEEEEECC-C----CCcccceeCCEEEEEe
Confidence 57999999448765554443 2 3344555555555553
No 116
>KOG4649 consensus PQQ (pyrrolo-quinoline quinone) repeat protein [Secondary metabolites biosynthesis, transport and catabolism]
Probab=97.49 E-value=0.052 Score=47.21 Aligned_cols=65 Identities=15% Similarity=0.138 Sum_probs=44.9
Q ss_pred EeeCCCeEEEEecCCEEEEEEcCCCeeEEeeccCCCcccCeEECC-CCCEEEEeCCCcEEEEcC-CC
Q 018474 59 VVVSKGALYTATRDGWVKYFILHNETLVNWKHIDSQSLLGLTTTK-DGGVILCDNEKGLLKVTE-EG 123 (355)
Q Consensus 59 ~d~~~g~l~~~~~~g~i~~~~~~~g~~~~~~~~~~~p~~gl~~d~-~g~L~v~~~~~gl~~~~~-~g 123 (355)
.|.++|.+|+++.|+..+.+|+++..-..-.+-++....+-++++ ++.||++...+.++++++ ++
T Consensus 101 ~d~~~glIycgshd~~~yalD~~~~~cVykskcgG~~f~sP~i~~g~~sly~a~t~G~vlavt~~~~ 167 (354)
T KOG4649|consen 101 CDFDGGLIYCGSHDGNFYALDPKTYGCVYKSKCGGGTFVSPVIAPGDGSLYAAITAGAVLAVTKNPY 167 (354)
T ss_pred EcCCCceEEEecCCCcEEEecccccceEEecccCCceeccceecCCCceEEEEeccceEEEEccCCC
Confidence 444689999999999999999976543322333332221445665 789999998877888884 44
No 117
>COG4946 Uncharacterized protein related to the periplasmic component of the Tol biopolymer transport system [Function unknown]
Probab=97.49 E-value=0.0094 Score=55.68 Aligned_cols=131 Identities=13% Similarity=0.124 Sum_probs=88.4
Q ss_pred eEEEEecCC-EEEEEEcCCCeeEEeeccCCCcccCeEECCCCC-EEEEeCCCcEEEEc-CCC-eEEEcCCc-CCcccEEE
Q 018474 65 ALYTATRDG-WVKYFILHNETLVNWKHIDSQSLLGLTTTKDGG-VILCDNEKGLLKVT-EEG-VEAIVPDA-SFTNDVIA 139 (355)
Q Consensus 65 ~l~~~~~~g-~i~~~~~~~g~~~~~~~~~~~p~~gl~~d~~g~-L~v~~~~~gl~~~~-~~g-~~~~~~~~-~~~~~l~~ 139 (355)
.+.+++.+| .+..++..+++.+++...-+++. .+..+++|. +.++.....|+.++ .+| ++.+.... ..+-++++
T Consensus 373 ~~vigt~dgD~l~iyd~~~~e~kr~e~~lg~I~-av~vs~dGK~~vvaNdr~el~vididngnv~~idkS~~~lItdf~~ 451 (668)
T COG4946 373 GDVIGTNDGDKLGIYDKDGGEVKRIEKDLGNIE-AVKVSPDGKKVVVANDRFELWVIDIDNGNVRLIDKSEYGLITDFDW 451 (668)
T ss_pred ceEEeccCCceEEEEecCCceEEEeeCCccceE-EEEEcCCCcEEEEEcCceEEEEEEecCCCeeEecccccceeEEEEE
Confidence 466677776 77788888888888877777888 999999998 66666556788888 678 77765443 67778888
Q ss_pred ccCCcEEEEeCCCCCCCccccccccccCCCCeEEEEeCCCCeEEEeeccccccccEEEeCCCCEEEEEeC
Q 018474 140 ASDGTLYFTVASTKYTPTDFYKDMAEGKPYGQLRKYDPKLKETTVLHEGFYFANGIALSKNEDFVVVCES 209 (355)
Q Consensus 140 d~dG~ly~~d~~~~~~~~~~~~~~~~~~~~g~l~~~dp~~~~~~~~~~~~~~pngi~~~~dg~~l~v~~~ 209 (355)
+++++.. +=+- + ++--+..+-.||..+++.-.+.+....-..=|++||++.||+-..
T Consensus 452 ~~nsr~i-AYaf-----P-------~gy~tq~Iklydm~~~Kiy~vTT~ta~DfsPaFD~d~ryLYfLs~ 508 (668)
T COG4946 452 HPNSRWI-AYAF-----P-------EGYYTQSIKLYDMDGGKIYDVTTPTAYDFSPAFDPDGRYLYFLSA 508 (668)
T ss_pred cCCceeE-EEec-----C-------cceeeeeEEEEecCCCeEEEecCCcccccCcccCCCCcEEEEEec
Confidence 8877533 2110 0 111133566677777776554443333333479999999998764
No 118
>KOG2106 consensus Uncharacterized conserved protein, contains HELP and WD40 domains [Function unknown]
Probab=97.48 E-value=0.034 Score=52.43 Aligned_cols=147 Identities=12% Similarity=0.093 Sum_probs=97.2
Q ss_pred CCCCceEEEeeCCCeEEEEecCCEEEEEEcCCCeeEEeeccCCCcccCeEECCCCCEEEEeCCCcEEEEcCC-C--eEEE
Q 018474 51 VNHPEDVSVVVSKGALYTATRDGWVKYFILHNETLVNWKHIDSQSLLGLTTTKDGGVILCDNEKGLLKVTEE-G--VEAI 127 (355)
Q Consensus 51 ~~~p~~i~~d~~~g~l~~~~~~g~i~~~~~~~g~~~~~~~~~~~p~~gl~~d~~g~L~v~~~~~gl~~~~~~-g--~~~~ 127 (355)
+..+..++.. .++ +|+++..+.|.+-...++-.....-.+..-. |++..++.++|++....+.+++-.+ . .+.+
T Consensus 329 ~G~iRtv~e~-~~d-i~vGTtrN~iL~Gt~~~~f~~~v~gh~delw-gla~hps~~q~~T~gqdk~v~lW~~~k~~wt~~ 405 (626)
T KOG2106|consen 329 FGPIRTVAEG-KGD-ILVGTTRNFILQGTLENGFTLTVQGHGDELW-GLATHPSKNQLLTCGQDKHVRLWNDHKLEWTKI 405 (626)
T ss_pred cCCeeEEecC-CCc-EEEeeccceEEEeeecCCceEEEEeccccee-eEEcCCChhheeeccCcceEEEccCCceeEEEE
Confidence 4556677776 344 9999998888887775553322222233567 9999999999988766666666532 2 2222
Q ss_pred cCCcCCcccEEEccCCcEEEEeCCCCCCCccccccccccCCCCeEEEEeCCCCeEEEeeccccccccEEEeCCCCEEEEE
Q 018474 128 VPDASFTNDVIAASDGTLYFTVASTKYTPTDFYKDMAEGKPYGQLRKYDPKLKETTVLHEGFYFANGIALSKNEDFVVVC 207 (355)
Q Consensus 128 ~~~~~~~~~l~~d~dG~ly~~d~~~~~~~~~~~~~~~~~~~~g~l~~~dp~~~~~~~~~~~~~~pngi~~~~dg~~l~v~ 207 (355)
.. .....+.++|.|.+-++ +..|+.+.+|.++..+..+......-+.+.++|||.++-+.
T Consensus 406 ~~--d~~~~~~fhpsg~va~G------------------t~~G~w~V~d~e~~~lv~~~~d~~~ls~v~ysp~G~~lAvg 465 (626)
T KOG2106|consen 406 IE--DPAECADFHPSGVVAVG------------------TATGRWFVLDTETQDLVTIHTDNEQLSVVRYSPDGAFLAVG 465 (626)
T ss_pred ec--CceeEeeccCcceEEEe------------------eccceEEEEecccceeEEEEecCCceEEEEEcCCCCEEEEe
Confidence 22 23556678888855443 33678888998776655555454445778999999966665
Q ss_pred eCCCCeEEEEEeCC
Q 018474 208 ESWKFRCRRYWLKG 221 (355)
Q Consensus 208 ~~~~~~i~~~~~~~ 221 (355)
+..+.|+.|.++.
T Consensus 466 -s~d~~iyiy~Vs~ 478 (626)
T KOG2106|consen 466 -SHDNHIYIYRVSA 478 (626)
T ss_pred -cCCCeEEEEEECC
Confidence 5678888888854
No 119
>PTZ00420 coronin; Provisional
Probab=97.47 E-value=0.11 Score=51.37 Aligned_cols=154 Identities=12% Similarity=0.014 Sum_probs=89.9
Q ss_pred CCCCCCceEEEeeC-CCeEEEEecCCEEEEEEcCCCee--E-------EeeccCCCcccCeEECCCCCEE-EEeCCCcEE
Q 018474 49 GCVNHPEDVSVVVS-KGALYTATRDGWVKYFILHNETL--V-------NWKHIDSQSLLGLTTTKDGGVI-LCDNEKGLL 117 (355)
Q Consensus 49 ~~~~~p~~i~~d~~-~g~l~~~~~~g~i~~~~~~~g~~--~-------~~~~~~~~p~~gl~~d~~g~L~-v~~~~~gl~ 117 (355)
+.-....++++.|. +..|.+++.+|.|..++..++.. . .+......+. .+++.+++..+ ++...++.+
T Consensus 72 gH~~~V~~lafsP~~~~lLASgS~DgtIrIWDi~t~~~~~~~i~~p~~~L~gH~~~V~-sVaf~P~g~~iLaSgS~DgtI 150 (568)
T PTZ00420 72 GHTSSILDLQFNPCFSEILASGSEDLTIRVWEIPHNDESVKEIKDPQCILKGHKKKIS-IIDWNPMNYYIMCSSGFDSFV 150 (568)
T ss_pred CCCCCEEEEEEcCCCCCEEEEEeCCCeEEEEECCCCCccccccccceEEeecCCCcEE-EEEECCCCCeEEEEEeCCCeE
Confidence 33345678888865 45677888899999999754321 1 1111223466 88999888644 333344544
Q ss_pred -EEc-CCC--eEEEcCCcCCcccEEEccCCcEEEEeCCCCCCCccccccccccCCCCeEEEEeCCCCeEEEeecccccc-
Q 018474 118 -KVT-EEG--VEAIVPDASFTNDVIAASDGTLYFTVASTKYTPTDFYKDMAEGKPYGQLRKYDPKLKETTVLHEGFYFA- 192 (355)
Q Consensus 118 -~~~-~~g--~~~~~~~~~~~~~l~~d~dG~ly~~d~~~~~~~~~~~~~~~~~~~~g~l~~~dp~~~~~~~~~~~~~~p- 192 (355)
.+| .++ ...+.. ...+.++.++++|.+.++... .+.+..||+.+++...-..+....
T Consensus 151 rIWDl~tg~~~~~i~~-~~~V~SlswspdG~lLat~s~-----------------D~~IrIwD~Rsg~~i~tl~gH~g~~ 212 (568)
T PTZ00420 151 NIWDIENEKRAFQINM-PKKLSSLKWNIKGNLLSGTCV-----------------GKHMHIIDPRKQEIASSFHIHDGGK 212 (568)
T ss_pred EEEECCCCcEEEEEec-CCcEEEEEECCCCCEEEEEec-----------------CCEEEEEECCCCcEEEEEecccCCc
Confidence 445 345 333322 246788999999988876433 456888999877653222211111
Q ss_pred cc-----EEEeCCCCEEEEEeCCC---CeEEEEEeCC
Q 018474 193 NG-----IALSKNEDFVVVCESWK---FRCRRYWLKG 221 (355)
Q Consensus 193 ng-----i~~~~dg~~l~v~~~~~---~~i~~~~~~~ 221 (355)
+. ..+++|++.+..+...+ ..|..|+++.
T Consensus 213 ~s~~v~~~~fs~d~~~IlTtG~d~~~~R~VkLWDlr~ 249 (568)
T PTZ00420 213 NTKNIWIDGLGGDDNYILSTGFSKNNMREMKLWDLKN 249 (568)
T ss_pred eeEEEEeeeEcCCCCEEEEEEcCCCCccEEEEEECCC
Confidence 11 12357877665554433 2587888753
No 120
>COG3490 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=97.44 E-value=0.056 Score=47.65 Aligned_cols=102 Identities=16% Similarity=0.189 Sum_probs=53.5
Q ss_pred CCCcccCeEECCCC--CEEEEeCCC-cEEEEcCCC---eEEEcC-Cc-CCcccEEEccCCc-EEEEeCCCCCCCcccccc
Q 018474 92 DSQSLLGLTTTKDG--GVILCDNEK-GLLKVTEEG---VEAIVP-DA-SFTNDVIAASDGT-LYFTVASTKYTPTDFYKD 162 (355)
Q Consensus 92 ~~~p~~gl~~d~~g--~L~v~~~~~-gl~~~~~~g---~~~~~~-~~-~~~~~l~~d~dG~-ly~~d~~~~~~~~~~~~~ 162 (355)
..+.+ +|++++.- .+.++.--+ --+.+|.++ ..++.. .. .+--+=++++||. ||.|....
T Consensus 67 paR~H-gi~~~p~~~ravafARrPGtf~~vfD~~~~~~pv~~~s~~~RHfyGHGvfs~dG~~LYATEndf---------- 135 (366)
T COG3490 67 PARGH-GIAFHPALPRAVAFARRPGTFAMVFDPNGAQEPVTLVSQEGRHFYGHGVFSPDGRLLYATENDF---------- 135 (366)
T ss_pred ccccC-CeecCCCCcceEEEEecCCceEEEECCCCCcCcEEEecccCceeecccccCCCCcEEEeecCCC----------
Confidence 34556 77776543 244443221 133445433 333322 22 3333447889995 66654331
Q ss_pred ccccCCCCeEEEEeCCCCeEEEe---eccccccccEEEeCCCCEEEEEe
Q 018474 163 MAEGKPYGQLRKYDPKLKETTVL---HEGFYFANGIALSKNEDFVVVCE 208 (355)
Q Consensus 163 ~~~~~~~g~l~~~dp~~~~~~~~---~~~~~~pngi~~~~dg~~l~v~~ 208 (355)
....|-|-.||-. ..+..+ ..-...|.-+.+.+||+.+.+++
T Consensus 136 ---d~~rGViGvYd~r-~~fqrvgE~~t~GiGpHev~lm~DGrtlvvan 180 (366)
T COG3490 136 ---DPNRGVIGVYDAR-EGFQRVGEFSTHGIGPHEVTLMADGRTLVVAN 180 (366)
T ss_pred ---CCCCceEEEEecc-cccceecccccCCcCcceeEEecCCcEEEEeC
Confidence 1224445667654 333322 22234588899999999888876
No 121
>KOG0294 consensus WD40 repeat-containing protein [Function unknown]
Probab=97.44 E-value=0.077 Score=47.24 Aligned_cols=176 Identities=13% Similarity=0.073 Sum_probs=97.8
Q ss_pred CCceEEEeeCCCeEEEEecCCEEEEEEcCCCe-eEEeeccCCCcccCeEECCCC---CEEEEeCCCcEEEEcCCC----e
Q 018474 53 HPEDVSVVVSKGALYTATRDGWVKYFILHNET-LVNWKHIDSQSLLGLTTTKDG---GVILCDNEKGLLKVTEEG----V 124 (355)
Q Consensus 53 ~p~~i~~d~~~g~l~~~~~~g~i~~~~~~~g~-~~~~~~~~~~p~~gl~~d~~g---~L~v~~~~~gl~~~~~~g----~ 124 (355)
.-.++|++ +..+..++.|-.|..||....+ ...+....+.++ .+.++..- .|.-+. .+|.+.+...| +
T Consensus 45 sitavAVs--~~~~aSGssDetI~IYDm~k~~qlg~ll~Hagsit-aL~F~~~~S~shLlS~s-dDG~i~iw~~~~W~~~ 120 (362)
T KOG0294|consen 45 SITALAVS--GPYVASGSSDETIHIYDMRKRKQLGILLSHAGSIT-ALKFYPPLSKSHLLSGS-DDGHIIIWRVGSWELL 120 (362)
T ss_pred ceeEEEec--ceeEeccCCCCcEEEEeccchhhhcceeccccceE-EEEecCCcchhheeeec-CCCcEEEEEcCCeEEe
Confidence 34566664 5555556778899999985432 222233345666 77776443 565554 34544443323 3
Q ss_pred EEEcCCcCCcccEEEccCCcEEEEeCCCCCCCccccccccccCCCCeEEEEeCCCCeEEEeeccccccccEEEeCCCCEE
Q 018474 125 EAIVPDASFTNDVIAASDGTLYFTVASTKYTPTDFYKDMAEGKPYGQLRKYDPKLKETTVLHEGFYFANGIALSKNEDFV 204 (355)
Q Consensus 125 ~~~~~~~~~~~~l~~d~dG~ly~~d~~~~~~~~~~~~~~~~~~~~g~l~~~dp~~~~~~~~~~~~~~pngi~~~~dg~~l 204 (355)
+.+......++++++.|.|.|=++..+ .+.+-.||.-+|+......--..+.-+.++|.|.+.
T Consensus 121 ~slK~H~~~Vt~lsiHPS~KLALsVg~-----------------D~~lr~WNLV~Gr~a~v~~L~~~at~v~w~~~Gd~F 183 (362)
T KOG0294|consen 121 KSLKAHKGQVTDLSIHPSGKLALSVGG-----------------DQVLRTWNLVRGRVAFVLNLKNKATLVSWSPQGDHF 183 (362)
T ss_pred eeecccccccceeEecCCCceEEEEcC-----------------CceeeeehhhcCccceeeccCCcceeeEEcCCCCEE
Confidence 444433355999999999998887654 223444454444433222222334558899999977
Q ss_pred EEEeCCCCeEEEEEeCCCCCcceeEecccCCCCcCceEECCCCCEEEEeec
Q 018474 205 VVCESWKFRCRRYWLKGDRAGILDAFIENLPGGPDNINLAPDGSFWIGLIK 255 (355)
Q Consensus 205 ~v~~~~~~~i~~~~~~~~~~~~~~~~~~~~~g~p~~i~~d~~G~lwv~~~~ 255 (355)
++.. +++|-.|.++...+-. .+ ..+-.+-.+.++..+.+.||...
T Consensus 184 ~v~~--~~~i~i~q~d~A~v~~---~i-~~~~r~l~~~~l~~~~L~vG~d~ 228 (362)
T KOG0294|consen 184 VVSG--RNKIDIYQLDNASVFR---EI-ENPKRILCATFLDGSELLVGGDN 228 (362)
T ss_pred EEEe--ccEEEEEecccHhHhh---hh-hccccceeeeecCCceEEEecCC
Confidence 7764 4677777764322111 11 11212344556666667776543
No 122
>PLN00181 protein SPA1-RELATED; Provisional
Probab=97.43 E-value=0.21 Score=52.06 Aligned_cols=180 Identities=12% Similarity=0.104 Sum_probs=99.9
Q ss_pred CceEEEeeC-CCeEEEEecCCEEEEEEcCCCeeEE-eeccCCCcccCeEECC-CCCEEEEeCCCcEEEE-c-CCC--eEE
Q 018474 54 PEDVSVVVS-KGALYTATRDGWVKYFILHNETLVN-WKHIDSQSLLGLTTTK-DGGVILCDNEKGLLKV-T-EEG--VEA 126 (355)
Q Consensus 54 p~~i~~d~~-~g~l~~~~~~g~i~~~~~~~g~~~~-~~~~~~~p~~gl~~d~-~g~L~v~~~~~gl~~~-~-~~g--~~~ 126 (355)
..++++.+. +..+.++..+|.|..+|..+++... +........ ++++++ ++.++++...++.+++ + .++ +..
T Consensus 535 v~~l~~~~~~~~~las~~~Dg~v~lWd~~~~~~~~~~~~H~~~V~-~l~~~p~~~~~L~Sgs~Dg~v~iWd~~~~~~~~~ 613 (793)
T PLN00181 535 LSGICWNSYIKSQVASSNFEGVVQVWDVARSQLVTEMKEHEKRVW-SIDYSSADPTLLASGSDDGSVKLWSINQGVSIGT 613 (793)
T ss_pred eeeEEeccCCCCEEEEEeCCCeEEEEECCCCeEEEEecCCCCCEE-EEEEcCCCCCEEEEEcCCCEEEEEECCCCcEEEE
Confidence 356777643 4567777889999999987775433 222234566 888885 6777666555564544 4 345 443
Q ss_pred EcCCcCCcccEEEc-cCCcEEEEeCCCCCCCccccccccccCCCCeEEEEeCCCCeE--EEeeccccccccEEEeCCCCE
Q 018474 127 IVPDASFTNDVIAA-SDGTLYFTVASTKYTPTDFYKDMAEGKPYGQLRKYDPKLKET--TVLHEGFYFANGIALSKNEDF 203 (355)
Q Consensus 127 ~~~~~~~~~~l~~d-~dG~ly~~d~~~~~~~~~~~~~~~~~~~~g~l~~~dp~~~~~--~~~~~~~~~pngi~~~~dg~~ 203 (355)
+... ..+..+.+. ++|.+.++.+. .+.+..||..+.+. ..+.........+++. ++..
T Consensus 614 ~~~~-~~v~~v~~~~~~g~~latgs~-----------------dg~I~iwD~~~~~~~~~~~~~h~~~V~~v~f~-~~~~ 674 (793)
T PLN00181 614 IKTK-ANICCVQFPSESGRSLAFGSA-----------------DHKVYYYDLRNPKLPLCTMIGHSKTVSYVRFV-DSST 674 (793)
T ss_pred EecC-CCeEEEEEeCCCCCEEEEEeC-----------------CCeEEEEECCCCCccceEecCCCCCEEEEEEe-CCCE
Confidence 3322 345556664 45766655433 56788888765432 2222111223456675 5664
Q ss_pred EEEEeCCCCeEEEEEeCCCC----CcceeEecccCCCCcCceEECCCCCEEEEeec
Q 018474 204 VVVCESWKFRCRRYWLKGDR----AGILDAFIENLPGGPDNINLAPDGSFWIGLIK 255 (355)
Q Consensus 204 l~v~~~~~~~i~~~~~~~~~----~~~~~~~~~~~~g~p~~i~~d~~G~lwv~~~~ 255 (355)
+++....+.|..|++.... ......+. ........+.++.+|.+.++...
T Consensus 675 -lvs~s~D~~ikiWd~~~~~~~~~~~~l~~~~-gh~~~i~~v~~s~~~~~lasgs~ 728 (793)
T PLN00181 675 -LVSSSTDNTLKLWDLSMSISGINETPLHSFM-GHTNVKNFVGLSVSDGYIATGSE 728 (793)
T ss_pred -EEEEECCCEEEEEeCCCCccccCCcceEEEc-CCCCCeeEEEEcCCCCEEEEEeC
Confidence 4555566778888874311 11122222 22222344667888876665543
No 123
>KOG1539 consensus WD repeat protein [General function prediction only]
Probab=97.42 E-value=0.014 Score=57.91 Aligned_cols=148 Identities=12% Similarity=0.142 Sum_probs=97.3
Q ss_pred CCceEEEeeCCCeEEEEecCCEEEEEEcCCCeeE-Eee---ccCCCcccCeEECCCCCEEEEeCCCcEEEEcC--CC--e
Q 018474 53 HPEDVSVVVSKGALYTATRDGWVKYFILHNETLV-NWK---HIDSQSLLGLTTTKDGGVILCDNEKGLLKVTE--EG--V 124 (355)
Q Consensus 53 ~p~~i~~d~~~g~l~~~~~~g~i~~~~~~~g~~~-~~~---~~~~~p~~gl~~d~~g~L~v~~~~~gl~~~~~--~g--~ 124 (355)
...+++++.-|+..++|...|.|-+++..+|... .|. ...+... |++.|.-+++.|+....|+..+.. ++ +
T Consensus 450 ~~~av~vs~CGNF~~IG~S~G~Id~fNmQSGi~r~sf~~~~ah~~~V~-gla~D~~n~~~vsa~~~Gilkfw~f~~k~l~ 528 (910)
T KOG1539|consen 450 NATAVCVSFCGNFVFIGYSKGTIDRFNMQSGIHRKSFGDSPAHKGEVT-GLAVDGTNRLLVSAGADGILKFWDFKKKVLK 528 (910)
T ss_pred ceEEEEEeccCceEEEeccCCeEEEEEcccCeeecccccCccccCcee-EEEecCCCceEEEccCcceEEEEecCCccee
Confidence 4567777767888899999999999999887432 331 1123455 999999999999887788877752 22 1
Q ss_pred EEEc--CCc---------------------------------------CCcccEEEccCCcEEEEeCCCCCCCccccccc
Q 018474 125 EAIV--PDA---------------------------------------SFTNDVIAASDGTLYFTVASTKYTPTDFYKDM 163 (355)
Q Consensus 125 ~~~~--~~~---------------------------------------~~~~~l~~d~dG~ly~~d~~~~~~~~~~~~~~ 163 (355)
..+. ... +.++++++++||+=.++-+.
T Consensus 529 ~~l~l~~~~~~iv~hr~s~l~a~~~ddf~I~vvD~~t~kvvR~f~gh~nritd~~FS~DgrWlisasm------------ 596 (910)
T KOG1539|consen 529 KSLRLGSSITGIVYHRVSDLLAIALDDFSIRVVDVVTRKVVREFWGHGNRITDMTFSPDGRWLISASM------------ 596 (910)
T ss_pred eeeccCCCcceeeeeehhhhhhhhcCceeEEEEEchhhhhhHHhhccccceeeeEeCCCCcEEEEeec------------
Confidence 1110 000 56777777777753333221
Q ss_pred cccCCCCeEEEEeCCCCeEEEeeccccccccEEEeCCCCEEEEEeCCCCeEEEEE
Q 018474 164 AEGKPYGQLRKYDPKLKETTVLHEGFYFANGIALSKNEDFVVVCESWKFRCRRYW 218 (355)
Q Consensus 164 ~~~~~~g~l~~~dp~~~~~~~~~~~~~~pngi~~~~dg~~l~v~~~~~~~i~~~~ 218 (355)
.+.+..||.-++..--...--.-+-.+.++|.|++|-.+..+.++|+.|.
T Consensus 597 -----D~tIr~wDlpt~~lID~~~vd~~~~sls~SPngD~LAT~Hvd~~gIylWs 646 (910)
T KOG1539|consen 597 -----DSTIRTWDLPTGTLIDGLLVDSPCTSLSFSPNGDFLATVHVDQNGIYLWS 646 (910)
T ss_pred -----CCcEEEEeccCcceeeeEecCCcceeeEECCCCCEEEEEEecCceEEEEE
Confidence 35677888766654322111123456889999999988888888888776
No 124
>PRK13684 Ycf48-like protein; Provisional
Probab=97.36 E-value=0.12 Score=47.83 Aligned_cols=218 Identities=11% Similarity=0.053 Sum_probs=105.9
Q ss_pred EEEEecCCEEEEEEcCCCeeEEeec---cCCCcccCeEECCCCCEEEEeCCCcEEEEcCCC--eEEEcCC-cCCcccEEE
Q 018474 66 LYTATRDGWVKYFILHNETLVNWKH---IDSQSLLGLTTTKDGGVILCDNEKGLLKVTEEG--VEAIVPD-ASFTNDVIA 139 (355)
Q Consensus 66 l~~~~~~g~i~~~~~~~g~~~~~~~---~~~~p~~gl~~d~~g~L~v~~~~~gl~~~~~~g--~~~~~~~-~~~~~~l~~ 139 (355)
.|+....|.|++-.-....++.+.. ..+.+. .+....++.+|++...+.+++-...| -+.+... ....+++.+
T Consensus 102 ~~~~G~~g~i~~S~DgG~tW~~~~~~~~~~~~~~-~i~~~~~~~~~~~g~~G~i~~S~DgG~tW~~~~~~~~g~~~~i~~ 180 (334)
T PRK13684 102 GWIVGQPSLLLHTTDGGKNWTRIPLSEKLPGSPY-LITALGPGTAEMATNVGAIYRTTDGGKNWEALVEDAAGVVRNLRR 180 (334)
T ss_pred EEEeCCCceEEEECCCCCCCeEccCCcCCCCCce-EEEEECCCcceeeeccceEEEECCCCCCceeCcCCCcceEEEEEE
Confidence 4444445555553321224444321 112344 44443445666665444566655444 3333222 245677888
Q ss_pred ccCCcEEEEeCCCCCCCccccccccccCCCCeEEEE-eCCCCeEEEeecc-ccccccEEEeCCCCEEEEEeCCCCeEEEE
Q 018474 140 ASDGTLYFTVASTKYTPTDFYKDMAEGKPYGQLRKY-DPKLKETTVLHEG-FYFANGIALSKNEDFVVVCESWKFRCRRY 217 (355)
Q Consensus 140 d~dG~ly~~d~~~~~~~~~~~~~~~~~~~~g~l~~~-dp~~~~~~~~~~~-~~~pngi~~~~dg~~l~v~~~~~~~i~~~ 217 (355)
+++|.+++... .|.+++- +.....++.+... ....+++++.++++ +|+... ++..++
T Consensus 181 ~~~g~~v~~g~------------------~G~i~~s~~~gg~tW~~~~~~~~~~l~~i~~~~~g~-~~~vg~--~G~~~~ 239 (334)
T PRK13684 181 SPDGKYVAVSS------------------RGNFYSTWEPGQTAWTPHQRNSSRRLQSMGFQPDGN-LWMLAR--GGQIRF 239 (334)
T ss_pred CCCCeEEEEeC------------------CceEEEEcCCCCCeEEEeeCCCcccceeeeEcCCCC-EEEEec--CCEEEE
Confidence 88776655432 2445544 3322345544322 23456788888887 555443 344444
Q ss_pred E-eCCCCCcceeEecccCCC-CcCceEECCCCCEEEEeecCCchhhHhhhcchhHHHHHHhccchhhcccCCCCCCceEE
Q 018474 218 W-LKGDRAGILDAFIENLPG-GPDNINLAPDGSFWIGLIKMNQTGVRAIQKCREKWELLDAYPGLISLLLPMGSDAGARV 295 (355)
Q Consensus 218 ~-~~~~~~~~~~~~~~~~~g-~p~~i~~d~~G~lwv~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v 295 (355)
. .++...-+.......... ....+.+.+++++|++... +.+
T Consensus 240 ~s~d~G~sW~~~~~~~~~~~~~l~~v~~~~~~~~~~~G~~-------------------------------------G~v 282 (334)
T PRK13684 240 NDPDDLESWSKPIIPEITNGYGYLDLAYRTPGEIWAGGGN-------------------------------------GTL 282 (334)
T ss_pred ccCCCCCccccccCCccccccceeeEEEcCCCCEEEEcCC-------------------------------------CeE
Confidence 2 333221111100000000 1233566677889987644 345
Q ss_pred EEEeCCCCeEEEEEECCCCCcccceeEEE-EeCCEEEEeecCCCeEEEeeC
Q 018474 296 VKVDGNDGKIIRDFNDPDATYISFVTSAA-EFDGNLYLASLQSNFIGILPL 345 (355)
Q Consensus 296 ~~~~~~~g~~~~~~~~~~g~~~~~~~~~~-~~~g~L~v~~~~~~~i~~~~~ 345 (355)
++-.. .|+..+....+.+.. .....+. .++++.|+... ...|.++.-
T Consensus 283 ~~S~d-~G~tW~~~~~~~~~~-~~~~~~~~~~~~~~~~~G~-~G~il~~~~ 330 (334)
T PRK13684 283 LVSKD-GGKTWEKDPVGEEVP-SNFYKIVFLDPEKGFVLGQ-RGVLLRYVG 330 (334)
T ss_pred EEeCC-CCCCCeECCcCCCCC-cceEEEEEeCCCceEEECC-CceEEEecC
Confidence 54333 677666554333432 2343344 45688888776 556666543
No 125
>PF01436 NHL: NHL repeat; InterPro: IPR001258 The NHL repeat, named after NCL-1, HT2A and Lin-41, is found largely in a large number of eukaryotic and prokaryotic proteins. For example, the repeat is found in a variety of enzymes of the copper type II, ascorbate-dependent monooxygenase family which catalyse the C terminus alpha-amidation of biological peptides []. In many it occurs in tandem arrays, for example in the ringfinger beta-box, coiled-coil (RBCC) eukaryotic growth regulators []. The 'Brain Tumor' protein (Brat) is one such growth regulator that contains a 6-bladed NHL-repeat beta-propeller [, ]. The NHL repeats are also found in serine/threonine protein kinase (STPK) in diverse range of pathogenic bacteria. These STPK are transmembrane receptors with a intracellular N-terminal kinase domain and extracellular C-terminal sensor domain. In the STPK, PknD, from Mycobacterium tuberculosis, the sensor domain forms a rigid, six-bladed b-propeller composed of NHL repeats with a flexible tether to the transmembrane domain.; GO: 0005515 protein binding; PDB: 3FVZ_A 3FW0_A 1RWL_A 1RWI_A 1Q7F_A.
Probab=97.36 E-value=0.00035 Score=39.11 Aligned_cols=27 Identities=19% Similarity=0.496 Sum_probs=24.1
Q ss_pred cccccEEEeCCCCEEEEEeCCCCeEEEE
Q 018474 190 YFANGIALSKNEDFVVVCESWKFRCRRY 217 (355)
Q Consensus 190 ~~pngi~~~~dg~~l~v~~~~~~~i~~~ 217 (355)
..|.|++++++|+ +|++|+..++|++|
T Consensus 2 ~~P~gvav~~~g~-i~VaD~~n~rV~vf 28 (28)
T PF01436_consen 2 NYPHGVAVDSDGN-IYVADSGNHRVQVF 28 (28)
T ss_dssp SSEEEEEEETTSE-EEEEECCCTEEEEE
T ss_pred cCCcEEEEeCCCC-EEEEECCCCEEEEC
Confidence 4699999998886 99999999999876
No 126
>PF03088 Str_synth: Strictosidine synthase; InterPro: IPR018119 This entry represents a conserved region found in strictosidine synthase (4.3.3.2 from EC), a key enzyme in alkaloid biosynthesis. It catalyses the Pictet-Spengler stereospecific condensation of tryptamine with secologanin to form strictosidine []. The structure of the native enzyme from the Indian medicinal plant Rauvolfia serpentina (Serpentwood) (Devilpepper) represents the first example of a six-bladed four-stranded beta-propeller fold from the plant kingdom [].; GO: 0016844 strictosidine synthase activity, 0009058 biosynthetic process; PDB: 2FPB_A 2V91_B 2FP8_A 3V1S_B 2FPC_A 2VAQ_A 2FP9_B.
Probab=97.34 E-value=0.0014 Score=47.75 Aligned_cols=64 Identities=14% Similarity=0.150 Sum_probs=45.9
Q ss_pred eEEEeeCCCeEEEEe------------------cCCEEEEEEcCCCeeEEeeccCCCcccCeEECCCCC-EEEEeCC-Cc
Q 018474 56 DVSVVVSKGALYTAT------------------RDGWVKYFILHNETLVNWKHIDSQSLLGLTTTKDGG-VILCDNE-KG 115 (355)
Q Consensus 56 ~i~~d~~~g~l~~~~------------------~~g~i~~~~~~~g~~~~~~~~~~~p~~gl~~d~~g~-L~v~~~~-~g 115 (355)
++.+++++|.+|... .+|+++++||.+++.+.+......|+ |+++++++. ++|++.. ..
T Consensus 2 dldv~~~~g~vYfTdsS~~~~~~~~~~~~le~~~~GRll~ydp~t~~~~vl~~~L~fpN-GVals~d~~~vlv~Et~~~R 80 (89)
T PF03088_consen 2 DLDVDQDTGTVYFTDSSSRYDRRDWVYDLLEGRPTGRLLRYDPSTKETTVLLDGLYFPN-GVALSPDESFVLVAETGRYR 80 (89)
T ss_dssp EEEE-TTT--EEEEES-SS--TTGHHHHHHHT---EEEEEEETTTTEEEEEEEEESSEE-EEEE-TTSSEEEEEEGGGTE
T ss_pred ceeEecCCCEEEEEeCccccCccceeeeeecCCCCcCEEEEECCCCeEEEehhCCCccC-eEEEcCCCCEEEEEeccCce
Confidence 567774448888764 36899999999999988877777899 999999987 7888765 45
Q ss_pred EEEEc
Q 018474 116 LLKVT 120 (355)
Q Consensus 116 l~~~~ 120 (355)
|.++.
T Consensus 81 i~ryw 85 (89)
T PF03088_consen 81 ILRYW 85 (89)
T ss_dssp EEEEE
T ss_pred EEEEE
Confidence 66665
No 127
>PRK13684 Ycf48-like protein; Provisional
Probab=97.33 E-value=0.13 Score=47.55 Aligned_cols=179 Identities=13% Similarity=0.102 Sum_probs=86.1
Q ss_pred CCCceEEEeeCCCeEEEEecCCEEEEEEcCCCeeEEeecc----CCCcccCeEECCCCCEEEEeCCCcEEEEcCCC--eE
Q 018474 52 NHPEDVSVVVSKGALYTATRDGWVKYFILHNETLVNWKHI----DSQSLLGLTTTKDGGVILCDNEKGLLKVTEEG--VE 125 (355)
Q Consensus 52 ~~p~~i~~d~~~g~l~~~~~~g~i~~~~~~~g~~~~~~~~----~~~p~~gl~~d~~g~L~v~~~~~gl~~~~~~g--~~ 125 (355)
....+|++. +.+..|+....|.|++=.-....++..... ..+.. .++++ .+..|++...+.+++=...| -+
T Consensus 46 ~~l~~v~F~-d~~~g~avG~~G~il~T~DgG~tW~~~~~~~~~~~~~l~-~v~~~-~~~~~~~G~~g~i~~S~DgG~tW~ 122 (334)
T PRK13684 46 ANLLDIAFT-DPNHGWLVGSNRTLLETNDGGETWEERSLDLPEENFRLI-SISFK-GDEGWIVGQPSLLLHTTDGGKNWT 122 (334)
T ss_pred CceEEEEEe-CCCcEEEEECCCEEEEEcCCCCCceECccCCccccccee-eeEEc-CCcEEEeCCCceEEEECCCCCCCe
Confidence 345667776 555556544567676654322345554221 11244 66665 34567765444455544434 34
Q ss_pred EEcCC---cCCcccEEEccCCcEEEEeCCCCCCCccccccccccCCCCeEEEEeCCCCeEEEeeccc-cccccEEEeCCC
Q 018474 126 AIVPD---ASFTNDVIAASDGTLYFTVASTKYTPTDFYKDMAEGKPYGQLRKYDPKLKETTVLHEGF-YFANGIALSKNE 201 (355)
Q Consensus 126 ~~~~~---~~~~~~l~~d~dG~ly~~d~~~~~~~~~~~~~~~~~~~~g~l~~~dp~~~~~~~~~~~~-~~pngi~~~~dg 201 (355)
.+... ...+..+....++.+|+... .|.+++-+-....++.+..+. ...+++.+++++
T Consensus 123 ~~~~~~~~~~~~~~i~~~~~~~~~~~g~------------------~G~i~~S~DgG~tW~~~~~~~~g~~~~i~~~~~g 184 (334)
T PRK13684 123 RIPLSEKLPGSPYLITALGPGTAEMATN------------------VGAIYRTTDGGKNWEALVEDAAGVVRNLRRSPDG 184 (334)
T ss_pred EccCCcCCCCCceEEEEECCCcceeeec------------------cceEEEECCCCCCceeCcCCCcceEEEEEECCCC
Confidence 33211 12333343333344444321 345666554455666554332 234567788887
Q ss_pred CEEEEEeCCCCeEEEEEeCCCCCcceeEecccCCCCcCceEECCCCCEEEEeec
Q 018474 202 DFVVVCESWKFRCRRYWLKGDRAGILDAFIENLPGGPDNINLAPDGSFWIGLIK 255 (355)
Q Consensus 202 ~~l~v~~~~~~~i~~~~~~~~~~~~~~~~~~~~~g~p~~i~~d~~G~lwv~~~~ 255 (355)
..+ +.. ..+.+++-.-++.. +.+...........++.+.++|++|+....
T Consensus 185 ~~v-~~g-~~G~i~~s~~~gg~--tW~~~~~~~~~~l~~i~~~~~g~~~~vg~~ 234 (334)
T PRK13684 185 KYV-AVS-SRGNFYSTWEPGQT--AWTPHQRNSSRRLQSMGFQPDGNLWMLARG 234 (334)
T ss_pred eEE-EEe-CCceEEEEcCCCCC--eEEEeeCCCcccceeeeEcCCCCEEEEecC
Confidence 533 332 34555543222211 122221111122455677778888887643
No 128
>KOG2106 consensus Uncharacterized conserved protein, contains HELP and WD40 domains [Function unknown]
Probab=97.30 E-value=0.15 Score=48.31 Aligned_cols=142 Identities=11% Similarity=0.099 Sum_probs=77.0
Q ss_pred CceEEEeeCCCeEEEEecCCEEEEEEcCCCeeEEeec-cCCCcccCeEECCCCCEEEEeCCCcEEEEcC--CC--eEEEc
Q 018474 54 PEDVSVVVSKGALYTATRDGWVKYFILHNETLVNWKH-IDSQSLLGLTTTKDGGVILCDNEKGLLKVTE--EG--VEAIV 128 (355)
Q Consensus 54 p~~i~~d~~~g~l~~~~~~g~i~~~~~~~g~~~~~~~-~~~~p~~gl~~d~~g~L~v~~~~~gl~~~~~--~g--~~~~~ 128 (355)
-.++++. .+|....+..+|.|..+++.+.++.+-.. ..+... ++..-++|.|.-+...+-+...+. .. -..++
T Consensus 249 Vl~v~F~-engdviTgDS~G~i~Iw~~~~~~~~k~~~aH~ggv~-~L~~lr~GtllSGgKDRki~~Wd~~y~k~r~~elP 326 (626)
T KOG2106|consen 249 VLCVTFL-ENGDVITGDSGGNILIWSKGTNRISKQVHAHDGGVF-SLCMLRDGTLLSGGKDRKIILWDDNYRKLRETELP 326 (626)
T ss_pred EEEEEEc-CCCCEEeecCCceEEEEeCCCceEEeEeeecCCceE-EEEEecCccEeecCccceEEeccccccccccccCc
Confidence 3467777 67778888889999999886665543222 123456 677778888876443333444442 11 11233
Q ss_pred CCcCCcccEEEccCCcEEEEeCCCCCCCccccccccccCCCCeEEEEeCCCC-eEEEeeccccccccEEEeCCCCEEEEE
Q 018474 129 PDASFTNDVIAASDGTLYFTVASTKYTPTDFYKDMAEGKPYGQLRKYDPKLK-ETTVLHEGFYFANGIALSKNEDFVVVC 207 (355)
Q Consensus 129 ~~~~~~~~l~~d~dG~ly~~d~~~~~~~~~~~~~~~~~~~~g~l~~~dp~~~-~~~~~~~~~~~pngi~~~~dg~~l~v~ 207 (355)
.....++.++.... .||++++. +.++.=+.+++ ...++..+ ..--|++.+|+.+ .|++
T Consensus 327 e~~G~iRtv~e~~~-di~vGTtr------------------N~iL~Gt~~~~f~~~v~gh~-delwgla~hps~~-q~~T 385 (626)
T KOG2106|consen 327 EQFGPIRTVAEGKG-DILVGTTR------------------NFILQGTLENGFTLTVQGHG-DELWGLATHPSKN-QLLT 385 (626)
T ss_pred hhcCCeeEEecCCC-cEEEeecc------------------ceEEEeeecCCceEEEEecc-cceeeEEcCCChh-heee
Confidence 33355666655433 38887654 12222111122 11222111 1345788999877 6666
Q ss_pred eCCCCeEEEEE
Q 018474 208 ESWKFRCRRYW 218 (355)
Q Consensus 208 ~~~~~~i~~~~ 218 (355)
....+.+..++
T Consensus 386 ~gqdk~v~lW~ 396 (626)
T KOG2106|consen 386 CGQDKHVRLWN 396 (626)
T ss_pred ccCcceEEEcc
Confidence 55554444444
No 129
>KOG0275 consensus Conserved WD40 repeat-containing protein [General function prediction only]
Probab=97.25 E-value=0.023 Score=50.65 Aligned_cols=152 Identities=13% Similarity=0.143 Sum_probs=89.7
Q ss_pred CCCCCCCceEEEeeCCCeEEEEecCCEEEEEEcCCCeeEEe---------eccCCCcccCeEECCCCCEEEEeCCCcEEE
Q 018474 48 EGCVNHPEDVSVVVSKGALYTATRDGWVKYFILHNETLVNW---------KHIDSQSLLGLTTTKDGGVILCDNEKGLLK 118 (355)
Q Consensus 48 ~~~~~~p~~i~~d~~~g~l~~~~~~g~i~~~~~~~g~~~~~---------~~~~~~p~~gl~~d~~g~L~v~~~~~gl~~ 118 (355)
-|.-..+|+-.+.|++..|..++.+|-|-.++-.+|+.++= ........ +|.+.+|..+......+|-++
T Consensus 210 Fg~KSh~EcA~FSPDgqyLvsgSvDGFiEVWny~~GKlrKDLkYQAqd~fMMmd~aVl-ci~FSRDsEMlAsGsqDGkIK 288 (508)
T KOG0275|consen 210 FGQKSHVECARFSPDGQYLVSGSVDGFIEVWNYTTGKLRKDLKYQAQDNFMMMDDAVL-CISFSRDSEMLASGSQDGKIK 288 (508)
T ss_pred cccccchhheeeCCCCceEeeccccceeeeehhccchhhhhhhhhhhcceeecccceE-EEeecccHHHhhccCcCCcEE
Confidence 35457899999998888888889999999998888876421 11112244 666766666665555556444
Q ss_pred Ec--CCC--eEEEcC-CcCCcccEEEccCCcEEEEeCCCCCCCccccccccccCCCCeEEEE-eCCCCe-EEEeeccccc
Q 018474 119 VT--EEG--VEAIVP-DASFTNDVIAASDGTLYFTVASTKYTPTDFYKDMAEGKPYGQLRKY-DPKLKE-TTVLHEGFYF 191 (355)
Q Consensus 119 ~~--~~g--~~~~~~-~~~~~~~l~~d~dG~ly~~d~~~~~~~~~~~~~~~~~~~~g~l~~~-dp~~~~-~~~~~~~~~~ 191 (355)
+. .+| ++.+.. ....+..+.++.|+.-.++.+. ....|+ -.++|+ ++.+...-++
T Consensus 289 vWri~tG~ClRrFdrAHtkGvt~l~FSrD~SqiLS~sf------------------D~tvRiHGlKSGK~LKEfrGHsSy 350 (508)
T KOG0275|consen 289 VWRIETGQCLRRFDRAHTKGVTCLSFSRDNSQILSASF------------------DQTVRIHGLKSGKCLKEFRGHSSY 350 (508)
T ss_pred EEEEecchHHHHhhhhhccCeeEEEEccCcchhhcccc------------------cceEEEeccccchhHHHhcCcccc
Confidence 44 355 444321 1256777778777633332211 112222 122332 2233333456
Q ss_pred cccEEEeCCCCEEEEEeCCCCeEEEEEe
Q 018474 192 ANGIALSKNEDFVVVCESWKFRCRRYWL 219 (355)
Q Consensus 192 pngi~~~~dg~~l~v~~~~~~~i~~~~~ 219 (355)
-|-..+++||+.++-+ +..+.|.+|+.
T Consensus 351 vn~a~ft~dG~~iisa-SsDgtvkvW~~ 377 (508)
T KOG0275|consen 351 VNEATFTDDGHHIISA-SSDGTVKVWHG 377 (508)
T ss_pred ccceEEcCCCCeEEEe-cCCccEEEecC
Confidence 7888999999865554 45667777765
No 130
>KOG0289 consensus mRNA splicing factor [General function prediction only]
Probab=97.24 E-value=0.17 Score=47.01 Aligned_cols=169 Identities=12% Similarity=0.117 Sum_probs=83.5
Q ss_pred CeEEEEecCCEEEEEEcCCCeeEEeeccC-CCcccCeEECCCCCEEEEeCCCcEEEEc--CCC--eEEEcCCcCCcccEE
Q 018474 64 GALYTATRDGWVKYFILHNETLVNWKHID-SQSLLGLTTTKDGGVILCDNEKGLLKVT--EEG--VEAIVPDASFTNDVI 138 (355)
Q Consensus 64 g~l~~~~~~g~i~~~~~~~g~~~~~~~~~-~~p~~gl~~d~~g~L~v~~~~~gl~~~~--~~g--~~~~~~~~~~~~~l~ 138 (355)
..+.++..+..+..+|...++.....+.. -.+. .+.+.++-...+.......+++. +.. .........-++++.
T Consensus 232 ~~ilTGG~d~~av~~d~~s~q~l~~~~Gh~kki~-~v~~~~~~~~v~~aSad~~i~vws~~~~s~~~~~~~h~~~V~~ls 310 (506)
T KOG0289|consen 232 SKILTGGEDKTAVLFDKPSNQILATLKGHTKKIT-SVKFHKDLDTVITASADEIIRVWSVPLSSEPTSSRPHEEPVTGLS 310 (506)
T ss_pred CcceecCCCCceEEEecchhhhhhhccCcceEEE-EEEeccchhheeecCCcceEEeeccccccCccccccccccceeee
Confidence 55666666766777776555443222111 1123 44444444443333344445544 221 111111124567777
Q ss_pred EccCCcEEEEeCCCCCCCccccccccccCCCCeEEEEeCCCCe-EEEeecc--ccccccEEEeCCCCEEEEEeCCCCeEE
Q 018474 139 AASDGTLYFTVASTKYTPTDFYKDMAEGKPYGQLRKYDPKLKE-TTVLHEG--FYFANGIALSKNEDFVVVCESWKFRCR 215 (355)
Q Consensus 139 ~d~dG~ly~~d~~~~~~~~~~~~~~~~~~~~g~l~~~dp~~~~-~~~~~~~--~~~pngi~~~~dg~~l~v~~~~~~~i~ 215 (355)
..+.|..+++.+.. +.....|-.++. +.++... ...-...+++|||. ++.+.+..+.|.
T Consensus 311 ~h~tgeYllsAs~d-----------------~~w~Fsd~~~g~~lt~vs~~~s~v~~ts~~fHpDgL-ifgtgt~d~~vk 372 (506)
T KOG0289|consen 311 LHPTGEYLLSASND-----------------GTWAFSDISSGSQLTVVSDETSDVEYTSAAFHPDGL-IFGTGTPDGVVK 372 (506)
T ss_pred eccCCcEEEEecCC-----------------ceEEEEEccCCcEEEEEeeccccceeEEeeEcCCce-EEeccCCCceEE
Confidence 77887655544331 111112222232 2222211 01123568999996 888887777777
Q ss_pred EEEeCCCCCcceeEecccCCCCcCceEECCCCCEEEEeec
Q 018474 216 RYWLKGDRAGILDAFIENLPGGPDNINLAPDGSFWIGLIK 255 (355)
Q Consensus 216 ~~~~~~~~~~~~~~~~~~~~g~p~~i~~d~~G~lwv~~~~ 255 (355)
.|+++... ....|. ...+-...+.+..+| +|.++..
T Consensus 373 iwdlks~~--~~a~Fp-ght~~vk~i~FsENG-Y~Lat~a 408 (506)
T KOG0289|consen 373 IWDLKSQT--NVAKFP-GHTGPVKAISFSENG-YWLATAA 408 (506)
T ss_pred EEEcCCcc--ccccCC-CCCCceeEEEeccCc-eEEEEEe
Confidence 77774322 222333 233334668888777 7777754
No 131
>PF08662 eIF2A: Eukaryotic translation initiation factor eIF2A; InterPro: IPR013979 This entry contains beta propellor domains found in eukaryotic translation initiation factors and TolB domain-containing proteins.
Probab=97.23 E-value=0.06 Score=45.69 Aligned_cols=131 Identities=11% Similarity=0.116 Sum_probs=77.6
Q ss_pred EEEEEEcCCCeeEEeec-cCCCcccCeEECCCCCEE-EEeC--CCcEEEEcCCC--eEEEcCCcCCcccEEEccCCcEEE
Q 018474 74 WVKYFILHNETLVNWKH-IDSQSLLGLTTTKDGGVI-LCDN--EKGLLKVTEEG--VEAIVPDASFTNDVIAASDGTLYF 147 (355)
Q Consensus 74 ~i~~~~~~~g~~~~~~~-~~~~p~~gl~~d~~g~L~-v~~~--~~gl~~~~~~g--~~~~~~~~~~~~~l~~d~dG~ly~ 147 (355)
.|++++..+.....+.. ..+.+. .+++.++|+-+ +... ...+..++..+ +..+.. ...|.+..+|+|++.+
T Consensus 40 ~l~~~~~~~~~~~~i~l~~~~~I~-~~~WsP~g~~favi~g~~~~~v~lyd~~~~~i~~~~~--~~~n~i~wsP~G~~l~ 116 (194)
T PF08662_consen 40 ELFYLNEKNIPVESIELKKEGPIH-DVAWSPNGNEFAVIYGSMPAKVTLYDVKGKKIFSFGT--QPRNTISWSPDGRFLV 116 (194)
T ss_pred EEEEEecCCCccceeeccCCCceE-EEEECcCCCEEEEEEccCCcccEEEcCcccEeEeecC--CCceEEEECCCCCEEE
Confidence 56677665554444432 223477 89999998743 4322 23355555434 444433 4678899999998766
Q ss_pred EeCCCCCCCccccccccccCCCCeEEEEeCCCCeEEEeeccccccccEEEeCCCCEEEEEeCC-----CCeEEEEEeCCC
Q 018474 148 TVASTKYTPTDFYKDMAEGKPYGQLRKYDPKLKETTVLHEGFYFANGIALSKNEDFVVVCESW-----KFRCRRYWLKGD 222 (355)
Q Consensus 148 ~d~~~~~~~~~~~~~~~~~~~~g~l~~~dp~~~~~~~~~~~~~~pngi~~~~dg~~l~v~~~~-----~~~i~~~~~~~~ 222 (355)
.... +...|.+..||.++.+..... .......++++|||+++..+.+. .+++..|+..|.
T Consensus 117 ~~g~--------------~n~~G~l~~wd~~~~~~i~~~-~~~~~t~~~WsPdGr~~~ta~t~~r~~~dng~~Iw~~~G~ 181 (194)
T PF08662_consen 117 LAGF--------------GNLNGDLEFWDVRKKKKISTF-EHSDATDVEWSPDGRYLATATTSPRLRVDNGFKIWSFQGR 181 (194)
T ss_pred EEEc--------------cCCCcEEEEEECCCCEEeecc-ccCcEEEEEEcCCCCEEEEEEeccceeccccEEEEEecCe
Confidence 5332 122467888997654432211 22345788999999987776653 445555665553
No 132
>TIGR03075 PQQ_enz_alc_DH PQQ-dependent dehydrogenase, methanol/ethanol family. This protein family has a phylogenetic distribution very similar to that coenzyme PQQ biosynthesis enzymes, as shown by partial phylogenetic profiling. Genes in this family often are found adjacent to the PQQ biosynthesis genes themselves. An unusual, strained disulfide bond between adjacent Cys residues contributes to PQQ-binding, as does a Trp residue that is part of a PQQ enzyme repeat (see pfam01011). Characterized members include the dehydrogenase subunit of a membrane-anchored, three subunit alcohol (ethanol) dehydrogenase of Gluconobacter suboxydans, a homodimeric ethanol dehydrogenase in Pseudomonas aeruginosa, and the large subunit of an alpha2/beta2 heterotetrameric methanol dehydrogenase in Methylobacterium extorquens.
Probab=97.22 E-value=0.18 Score=49.76 Aligned_cols=107 Identities=16% Similarity=0.171 Sum_probs=62.7
Q ss_pred CCeEEEEecCCEEEEEEcCCCeeEE-eeccC---CC--------cccCeEECCCCCEEEEeCCCcEEEEc-CCC-eEE-E
Q 018474 63 KGALYTATRDGWVKYFILHNETLVN-WKHID---SQ--------SLLGLTTTKDGGVILCDNEKGLLKVT-EEG-VEA-I 127 (355)
Q Consensus 63 ~g~l~~~~~~g~i~~~~~~~g~~~~-~~~~~---~~--------p~~gl~~d~~g~L~v~~~~~gl~~~~-~~g-~~~-~ 127 (355)
++.+|+++.++.|+.+|.++|+..- +.... .. .. ++++. ++++|+++..+.++.+| ++| +.- .
T Consensus 69 ~g~vyv~s~~g~v~AlDa~TGk~lW~~~~~~~~~~~~~~~~~~~~r-g~av~-~~~v~v~t~dg~l~ALDa~TGk~~W~~ 146 (527)
T TIGR03075 69 DGVMYVTTSYSRVYALDAKTGKELWKYDPKLPDDVIPVMCCDVVNR-GVALY-DGKVFFGTLDARLVALDAKTGKVVWSK 146 (527)
T ss_pred CCEEEEECCCCcEEEEECCCCceeeEecCCCCcccccccccccccc-cceEE-CCEEEEEcCCCEEEEEECCCCCEEeec
Confidence 7899999988999999999997431 11100 00 12 34443 57899998777899999 478 321 1
Q ss_pred c-CCcC---Cc-ccEEEccCCcEEEEeCCCCCCCccccccccccCCCCeEEEEeCCCCeEEE
Q 018474 128 V-PDAS---FT-NDVIAASDGTLYFTVASTKYTPTDFYKDMAEGKPYGQLRKYDPKLKETTV 184 (355)
Q Consensus 128 ~-~~~~---~~-~~l~~d~dG~ly~~d~~~~~~~~~~~~~~~~~~~~g~l~~~dp~~~~~~~ 184 (355)
. .... .+ ..-++ .+|.||++.+...+ ...|.++.+|.++|+...
T Consensus 147 ~~~~~~~~~~~tssP~v-~~g~Vivg~~~~~~------------~~~G~v~AlD~~TG~~lW 195 (527)
T TIGR03075 147 KNGDYKAGYTITAAPLV-VKGKVITGISGGEF------------GVRGYVTAYDAKTGKLVW 195 (527)
T ss_pred ccccccccccccCCcEE-ECCEEEEeeccccc------------CCCcEEEEEECCCCceeE
Confidence 1 1100 01 11111 25678887543111 124677888887776543
No 133
>KOG2055 consensus WD40 repeat protein [General function prediction only]
Probab=97.18 E-value=0.043 Score=51.14 Aligned_cols=193 Identities=12% Similarity=0.127 Sum_probs=108.8
Q ss_pred CcccCeEECCCCCE-EEEeCCC--cEEEEc-CCC--eEEEcCCcCCcccEEEccCCc-EEEEeCCCCCCCcccccccccc
Q 018474 94 QSLLGLTTTKDGGV-ILCDNEK--GLLKVT-EEG--VEAIVPDASFTNDVIAASDGT-LYFTVASTKYTPTDFYKDMAEG 166 (355)
Q Consensus 94 ~p~~gl~~d~~g~L-~v~~~~~--gl~~~~-~~g--~~~~~~~~~~~~~l~~d~dG~-ly~~d~~~~~~~~~~~~~~~~~ 166 (355)
.+. ++.+.+.-.| .+|...+ .||.+| +.. ++.+.-...-+....+.++|. ..++.+.
T Consensus 215 ~I~-sv~FHp~~plllvaG~d~~lrifqvDGk~N~~lqS~~l~~fPi~~a~f~p~G~~~i~~s~r--------------- 278 (514)
T KOG2055|consen 215 GIT-SVQFHPTAPLLLVAGLDGTLRIFQVDGKVNPKLQSIHLEKFPIQKAEFAPNGHSVIFTSGR--------------- 278 (514)
T ss_pred Cce-EEEecCCCceEEEecCCCcEEEEEecCccChhheeeeeccCccceeeecCCCceEEEeccc---------------
Confidence 355 7778776654 4454332 255555 322 333222212345567888986 5555443
Q ss_pred CCCCeEEEEeCCCCeEEEeeccccc----cccEEEeCCCCEEEEEeCCCCeEEEEEeCCC-CCcceeEecccCCCCcCce
Q 018474 167 KPYGQLRKYDPKLKETTVLHEGFYF----ANGIALSKNEDFVVVCESWKFRCRRYWLKGD-RAGILDAFIENLPGGPDNI 241 (355)
Q Consensus 167 ~~~g~l~~~dp~~~~~~~~~~~~~~----pngi~~~~dg~~l~v~~~~~~~i~~~~~~~~-~~~~~~~~~~~~~g~p~~i 241 (355)
.-.+|.||..+.+++.+...... -.-..+++|++++.+.. ..+.|....-... .++.+ ..+|...++
T Consensus 279 --rky~ysyDle~ak~~k~~~~~g~e~~~~e~FeVShd~~fia~~G-~~G~I~lLhakT~eli~s~-----KieG~v~~~ 350 (514)
T KOG2055|consen 279 --RKYLYSYDLETAKVTKLKPPYGVEEKSMERFEVSHDSNFIAIAG-NNGHIHLLHAKTKELITSF-----KIEGVVSDF 350 (514)
T ss_pred --ceEEEEeeccccccccccCCCCcccchhheeEecCCCCeEEEcc-cCceEEeehhhhhhhhhee-----eeccEEeeE
Confidence 23588999988877655432211 23356889999766654 3456666553221 12222 234556778
Q ss_pred EECCCCC-EEEEeecCCchhhHhhhcchhHHHHHHhccchhhcccCCCCCCceEEEEEeCCCCeEEEEEECCCCCcccce
Q 018474 242 NLAPDGS-FWIGLIKMNQTGVRAIQKCREKWELLDAYPGLISLLLPMGSDAGARVVKVDGNDGKIIRDFNDPDATYISFV 320 (355)
Q Consensus 242 ~~d~~G~-lwv~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~g~~~~~~~~~~g~~~~~~ 320 (355)
.++++|+ ||++... |.|+.+|-.....+..|.+..+. ..
T Consensus 351 ~fsSdsk~l~~~~~~-------------------------------------GeV~v~nl~~~~~~~rf~D~G~v---~g 390 (514)
T KOG2055|consen 351 TFSSDSKELLASGGT-------------------------------------GEVYVWNLRQNSCLHRFVDDGSV---HG 390 (514)
T ss_pred EEecCCcEEEEEcCC-------------------------------------ceEEEEecCCcceEEEEeecCcc---ce
Confidence 8999996 5555433 46888886344667778774442 34
Q ss_pred eEEEEe-CCEEEEeecCCCeEEEeeCCCCCC
Q 018474 321 TSAAEF-DGNLYLASLQSNFIGILPLDGPEP 350 (355)
Q Consensus 321 ~~~~~~-~g~L~v~~~~~~~i~~~~~~~~~~ 350 (355)
+.++.. ++.++..+...+-|=.|+..+.-+
T Consensus 391 ts~~~S~ng~ylA~GS~~GiVNIYd~~s~~~ 421 (514)
T KOG2055|consen 391 TSLCISLNGSYLATGSDSGIVNIYDGNSCFA 421 (514)
T ss_pred eeeeecCCCceEEeccCcceEEEeccchhhc
Confidence 445543 455444455577777777655443
No 134
>KOG0271 consensus Notchless-like WD40 repeat-containing protein [Function unknown]
Probab=97.17 E-value=0.088 Score=48.10 Aligned_cols=200 Identities=14% Similarity=0.097 Sum_probs=110.2
Q ss_pred CCCCCCceEEEee-----CCCeEEEEecCCEEEEEEcCCCeeEEeeccC-CCcccCeEECCCCCEEEEeCCCcEEEE-c-
Q 018474 49 GCVNHPEDVSVVV-----SKGALYTATRDGWVKYFILHNETLVNWKHID-SQSLLGLTTTKDGGVILCDNEKGLLKV-T- 120 (355)
Q Consensus 49 ~~~~~p~~i~~d~-----~~g~l~~~~~~g~i~~~~~~~g~~~~~~~~~-~~p~~gl~~d~~g~L~v~~~~~gl~~~-~- 120 (355)
|.-+.-.++++.| ..+.|-.++.||.+..+|...++.......- .... ++.+..+|-||-+... +.+++ .
T Consensus 198 gH~K~It~Lawep~hl~p~~r~las~skDg~vrIWd~~~~~~~~~lsgHT~~VT-CvrwGG~gliySgS~D-rtIkvw~a 275 (480)
T KOG0271|consen 198 GHKKWITALAWEPLHLVPPCRRLASSSKDGSVRIWDTKLGTCVRTLSGHTASVT-CVRWGGEGLIYSGSQD-RTIKVWRA 275 (480)
T ss_pred CcccceeEEeecccccCCCccceecccCCCCEEEEEccCceEEEEeccCccceE-EEEEcCCceEEecCCC-ceEEEEEc
Confidence 3345556666664 2344555667898988888666554433221 2344 7888778888877644 44444 3
Q ss_pred CCC--eEEEcCCcCCcccEEEccCCcEEEE--eCCCCC---------------C--CccccccccccCCCCeEEEEeCCC
Q 018474 121 EEG--VEAIVPDASFTNDVIAASDGTLYFT--VASTKY---------------T--PTDFYKDMAEGKPYGQLRKYDPKL 179 (355)
Q Consensus 121 ~~g--~~~~~~~~~~~~~l~~d~dG~ly~~--d~~~~~---------------~--~~~~~~~~~~~~~~g~l~~~dp~~ 179 (355)
.+| .+.+.....++|.++.+.|=-|-.+ +...++ . +++....+..+.....++.|+|..
T Consensus 276 ~dG~~~r~lkGHahwvN~lalsTdy~LRtgaf~~t~~~~~~~se~~~~Al~rY~~~~~~~~erlVSgsDd~tlflW~p~~ 355 (480)
T KOG0271|consen 276 LDGKLCRELKGHAHWVNHLALSTDYVLRTGAFDHTGRKPKSFSEEQKKALERYEAVLKDSGERLVSGSDDFTLFLWNPFK 355 (480)
T ss_pred cchhHHHhhcccchheeeeeccchhhhhccccccccccCCChHHHHHHHHHHHHHhhccCcceeEEecCCceEEEecccc
Confidence 366 5555555578888877643111100 000000 0 011112344555567899999853
Q ss_pred Ce--EEEeeccccccccEEEeCCCCEEEEEeCCCCeEEEEEeCCCCCccee-EecccCCCCcCceEECCCCCEEEEeec
Q 018474 180 KE--TTVLHEGFYFANGIALSKNEDFVVVCESWKFRCRRYWLKGDRAGILD-AFIENLPGGPDNINLAPDGSFWIGLIK 255 (355)
Q Consensus 180 ~~--~~~~~~~~~~pngi~~~~dg~~l~v~~~~~~~i~~~~~~~~~~~~~~-~~~~~~~g~p~~i~~d~~G~lwv~~~~ 255 (355)
.+ ++.+......-|-+.|+||++ .+.+.+..+.|..++-+. +++- .|- +.-+.-.-++..+|.+|.|+...
T Consensus 356 ~kkpi~rmtgHq~lVn~V~fSPd~r-~IASaSFDkSVkLW~g~t---Gk~lasfR-GHv~~VYqvawsaDsRLlVS~Sk 429 (480)
T KOG0271|consen 356 SKKPITRMTGHQALVNHVSFSPDGR-YIASASFDKSVKLWDGRT---GKFLASFR-GHVAAVYQVAWSADSRLLVSGSK 429 (480)
T ss_pred cccchhhhhchhhheeeEEECCCcc-EEEEeecccceeeeeCCC---cchhhhhh-hccceeEEEEeccCccEEEEcCC
Confidence 22 122222344578899999997 555566677777666432 2221 111 11112234667888899998866
No 135
>PF07433 DUF1513: Protein of unknown function (DUF1513); InterPro: IPR008311 There are currently no experimental data for members of this group or their homologues, nor do they exhibit features indicative of any function.
Probab=97.16 E-value=0.17 Score=45.56 Aligned_cols=248 Identities=18% Similarity=0.192 Sum_probs=130.4
Q ss_pred CceEEEeeCCCe-EEEEec-CCEEEEEEcCCCeeEEeecc-CC-CcccCe-EECCCCC-EEEEeC----CCcEE-EEcCC
Q 018474 54 PEDVSVVVSKGA-LYTATR-DGWVKYFILHNETLVNWKHI-DS-QSLLGL-TTTKDGG-VILCDN----EKGLL-KVTEE 122 (355)
Q Consensus 54 p~~i~~d~~~g~-l~~~~~-~g~i~~~~~~~g~~~~~~~~-~~-~p~~gl-~~d~~g~-L~v~~~----~~gl~-~~~~~ 122 (355)
..+++.+|.... +.++-. .-..+++|+.+|+....... .+ +-+ |- ++++||+ ||.++. +.|++ .++..
T Consensus 7 gH~~a~~p~~~~avafaRRPG~~~~v~D~~~g~~~~~~~a~~gRHFy-GHg~fs~dG~~LytTEnd~~~g~G~IgVyd~~ 85 (305)
T PF07433_consen 7 GHGVAAHPTRPEAVAFARRPGTFALVFDCRTGQLLQRLWAPPGRHFY-GHGVFSPDGRLLYTTENDYETGRGVIGVYDAA 85 (305)
T ss_pred ccceeeCCCCCeEEEEEeCCCcEEEEEEcCCCceeeEEcCCCCCEEe-cCEEEcCCCCEEEEeccccCCCcEEEEEEECc
Confidence 445555542222 223322 33567788877776544322 22 223 32 3567887 555543 24544 44543
Q ss_pred -C---eEEEcCCcCCcccEEEccCC-cEEEEeCCCCCCCccccccccccCCCCeEEEEeCCCCeEEEeec---cc--ccc
Q 018474 123 -G---VEAIVPDASFTNDVIAASDG-TLYFTVASTKYTPTDFYKDMAEGKPYGQLRKYDPKLKETTVLHE---GF--YFA 192 (355)
Q Consensus 123 -g---~~~~~~~~~~~~~l~~d~dG-~ly~~d~~~~~~~~~~~~~~~~~~~~g~l~~~dp~~~~~~~~~~---~~--~~p 192 (355)
+ +..+....-.|.++...+|| +|.|++.+-....+.--..+...+..-.|...|..+|++..... .. ..-
T Consensus 86 ~~~~ri~E~~s~GIGPHel~l~pDG~tLvVANGGI~Thpd~GR~kLNl~tM~psL~~ld~~sG~ll~q~~Lp~~~~~lSi 165 (305)
T PF07433_consen 86 RGYRRIGEFPSHGIGPHELLLMPDGETLVVANGGIETHPDSGRAKLNLDTMQPSLVYLDARSGALLEQVELPPDLHQLSI 165 (305)
T ss_pred CCcEEEeEecCCCcChhhEEEcCCCCEEEEEcCCCccCcccCceecChhhcCCceEEEecCCCceeeeeecCccccccce
Confidence 4 33344434689999999999 89998865221111101112222334468888888887643311 11 123
Q ss_pred ccEEEeCCCCEEEEEeCCCCe-------EEEEEeCCCCCcceeEec------ccCCCCcCceEECCCCCEEEEeecCCch
Q 018474 193 NGIALSKNEDFVVVCESWKFR-------CRRYWLKGDRAGILDAFI------ENLPGGPDNINLAPDGSFWIGLIKMNQT 259 (355)
Q Consensus 193 ngi~~~~dg~~l~v~~~~~~~-------i~~~~~~~~~~~~~~~~~------~~~~g~p~~i~~d~~G~lwv~~~~~~~~ 259 (355)
.-++++.||. ++++.-..+. |..+.. +. ..+.+. ..+.+|.-.++++.+|+++..+..-
T Consensus 166 RHLa~~~~G~-V~~a~Q~qg~~~~~~PLva~~~~-g~---~~~~~~~p~~~~~~l~~Y~gSIa~~~~g~~ia~tsPr--- 237 (305)
T PF07433_consen 166 RHLAVDGDGT-VAFAMQYQGDPGDAPPLVALHRR-GG---ALRLLPAPEEQWRRLNGYIGSIAADRDGRLIAVTSPR--- 237 (305)
T ss_pred eeEEecCCCc-EEEEEecCCCCCccCCeEEEEcC-CC---cceeccCChHHHHhhCCceEEEEEeCCCCEEEEECCC---
Confidence 4578888886 5554422111 111111 11 111111 1233566678999999877666431
Q ss_pred hhHhhhcchhHHHHHHhccchhhcccCCCCCCceEEEEEeCCCCeEEEEEECCCCCcccceeEEEEeCCEEEEeecCCCe
Q 018474 260 GVRAIQKCREKWELLDAYPGLISLLLPMGSDAGARVVKVDGNDGKIIRDFNDPDATYISFVTSAAEFDGNLYLASLQSNF 339 (355)
Q Consensus 260 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~g~~~~~~~~~~g~~~~~~~~~~~~~g~L~v~~~~~~~ 339 (355)
.+++..+|.++|+.+....-++. +++...++. |+.+.....
T Consensus 238 --------------------------------Gg~~~~~d~~tg~~~~~~~l~D~------cGva~~~~~-f~~ssG~G~ 278 (305)
T PF07433_consen 238 --------------------------------GGRVAVWDAATGRLLGSVPLPDA------CGVAPTDDG-FLVSSGQGQ 278 (305)
T ss_pred --------------------------------CCEEEEEECCCCCEeeccccCce------eeeeecCCc-eEEeCCCcc
Confidence 25788888768998887766663 334444333 566666666
Q ss_pred EEEeeCCCCC
Q 018474 340 IGILPLDGPE 349 (355)
Q Consensus 340 i~~~~~~~~~ 349 (355)
+..+......
T Consensus 279 ~~~~~~~~~~ 288 (305)
T PF07433_consen 279 LIRLSPDGPQ 288 (305)
T ss_pred EEEccCcccc
Confidence 6666554443
No 136
>KOG0315 consensus G-protein beta subunit-like protein (contains WD40 repeats) [General function prediction only]
Probab=97.13 E-value=0.15 Score=44.13 Aligned_cols=170 Identities=16% Similarity=0.126 Sum_probs=100.6
Q ss_pred EEEEecCCEEEEEEcCCCeeE-EeeccCCCcccCeEECCCCCEEEEeCCCcEEEEc-CCC----eEEEcCCcCCcccEEE
Q 018474 66 LYTATRDGWVKYFILHNETLV-NWKHIDSQSLLGLTTTKDGGVILCDNEKGLLKVT-EEG----VEAIVPDASFTNDVIA 139 (355)
Q Consensus 66 l~~~~~~g~i~~~~~~~g~~~-~~~~~~~~p~~gl~~d~~g~L~v~~~~~gl~~~~-~~g----~~~~~~~~~~~~~l~~ 139 (355)
|..+.+|..|..+...+|.-. .+.+.....+ .+.+.++++...+...+.+-.|| ..+ +-.+....+.+..+.+
T Consensus 13 LvsA~YDhTIRfWqa~tG~C~rTiqh~dsqVN-rLeiTpdk~~LAaa~~qhvRlyD~~S~np~Pv~t~e~h~kNVtaVgF 91 (311)
T KOG0315|consen 13 LVSAGYDHTIRFWQALTGICSRTIQHPDSQVN-RLEITPDKKDLAAAGNQHVRLYDLNSNNPNPVATFEGHTKNVTAVGF 91 (311)
T ss_pred EEeccCcceeeeeehhcCeEEEEEecCcccee-eEEEcCCcchhhhccCCeeEEEEccCCCCCceeEEeccCCceEEEEE
Confidence 334567888888888888644 3334455677 88888888877666565555555 222 3333333356777788
Q ss_pred ccCCcEEEEeCCCCCCCccccccccccCCCCeEEEEeCCCCeEEEeeccccccccEEEeCCCCEEEEEeCCCCeEEEEEe
Q 018474 140 ASDGTLYFTVASTKYTPTDFYKDMAEGKPYGQLRKYDPKLKETTVLHEGFYFANGIALSKNEDFVVVCESWKFRCRRYWL 219 (355)
Q Consensus 140 d~dG~ly~~d~~~~~~~~~~~~~~~~~~~~g~l~~~dp~~~~~~~~~~~~~~pngi~~~~dg~~l~v~~~~~~~i~~~~~ 219 (355)
-.+|+--.+.+. .|.+-.||...-..........--|.+.++|++..|++++ ..+.|+.+|+
T Consensus 92 ~~dgrWMyTgse-----------------Dgt~kIWdlR~~~~qR~~~~~spVn~vvlhpnQteLis~d-qsg~irvWDl 153 (311)
T KOG0315|consen 92 QCDGRWMYTGSE-----------------DGTVKIWDLRSLSCQRNYQHNSPVNTVVLHPNQTELISGD-QSGNIRVWDL 153 (311)
T ss_pred eecCeEEEecCC-----------------CceEEEEeccCcccchhccCCCCcceEEecCCcceEEeec-CCCcEEEEEc
Confidence 888864444332 4556666665433222222224458899999988787776 5789999998
Q ss_pred CCCCCcceeEecccCCCCcCceEECCCCCEEEEeecC
Q 018474 220 KGDRAGILDAFIENLPGGPDNINLAPDGSFWIGLIKM 256 (355)
Q Consensus 220 ~~~~~~~~~~~~~~~~g~p~~i~~d~~G~lwv~~~~~ 256 (355)
..... ..+...+.. .....+.+++||...++.+..
T Consensus 154 ~~~~c-~~~liPe~~-~~i~sl~v~~dgsml~a~nnk 188 (311)
T KOG0315|consen 154 GENSC-THELIPEDD-TSIQSLTVMPDGSMLAAANNK 188 (311)
T ss_pred cCCcc-ccccCCCCC-cceeeEEEcCCCcEEEEecCC
Confidence 54321 112122111 123445667777766666543
No 137
>PTZ00421 coronin; Provisional
Probab=97.12 E-value=0.31 Score=47.68 Aligned_cols=110 Identities=6% Similarity=-0.008 Sum_probs=67.8
Q ss_pred CCcccCeEECC-CCCEEEEeCCCcEEE-Ec-CCC-e--------EEEcCCcCCcccEEEccCC-cEEEEeCCCCCCCccc
Q 018474 93 SQSLLGLTTTK-DGGVILCDNEKGLLK-VT-EEG-V--------EAIVPDASFTNDVIAASDG-TLYFTVASTKYTPTDF 159 (355)
Q Consensus 93 ~~p~~gl~~d~-~g~L~v~~~~~gl~~-~~-~~g-~--------~~~~~~~~~~~~l~~d~dG-~ly~~d~~~~~~~~~~ 159 (355)
+.+. ++++++ +++++++...++.++ ++ +++ . ..+......+..+.+.|++ ++.++.+.
T Consensus 76 ~~V~-~v~fsP~d~~~LaSgS~DgtIkIWdi~~~~~~~~~~~~l~~L~gH~~~V~~l~f~P~~~~iLaSgs~-------- 146 (493)
T PTZ00421 76 GPII-DVAFNPFDPQKLFTASEDGTIMGWGIPEEGLTQNISDPIVHLQGHTKKVGIVSFHPSAMNVLASAGA-------- 146 (493)
T ss_pred CCEE-EEEEcCCCCCEEEEEeCCCEEEEEecCCCccccccCcceEEecCCCCcEEEEEeCcCCCCEEEEEeC--------
Confidence 3466 888987 676655544555444 44 332 1 2222222567888898875 56655332
Q ss_pred cccccccCCCCeEEEEeCCCCeEEEeec-cccccccEEEeCCCCEEEEEeCCCCeEEEEEeCC
Q 018474 160 YKDMAEGKPYGQLRKYDPKLKETTVLHE-GFYFANGIALSKNEDFVVVCESWKFRCRRYWLKG 221 (355)
Q Consensus 160 ~~~~~~~~~~g~l~~~dp~~~~~~~~~~-~~~~pngi~~~~dg~~l~v~~~~~~~i~~~~~~~ 221 (355)
.+.+..||..+++...... .....+.+++++|++ ++++....+.|..||+..
T Consensus 147 ---------DgtVrIWDl~tg~~~~~l~~h~~~V~sla~spdG~-lLatgs~Dg~IrIwD~rs 199 (493)
T PTZ00421 147 ---------DMVVNVWDVERGKAVEVIKCHSDQITSLEWNLDGS-LLCTTSKDKKLNIIDPRD 199 (493)
T ss_pred ---------CCEEEEEECCCCeEEEEEcCCCCceEEEEEECCCC-EEEEecCCCEEEEEECCC
Confidence 4578888887775433222 223356789999998 455556678899999854
No 138
>smart00135 LY Low-density lipoprotein-receptor YWTD domain. Type "B" repeats in low-density lipoprotein (LDL) receptor that plays a central role in mammalian cholesterol metabolism. Also present in a variety of molecules similar to gp300/megalin.
Probab=97.10 E-value=0.002 Score=39.73 Aligned_cols=37 Identities=22% Similarity=0.068 Sum_probs=32.7
Q ss_pred eccccccccEEEeCCCCEEEEEeCCCCeEEEEEeCCC
Q 018474 186 HEGFYFANGIALSKNEDFVVVCESWKFRCRRYWLKGD 222 (355)
Q Consensus 186 ~~~~~~pngi~~~~dg~~l~v~~~~~~~i~~~~~~~~ 222 (355)
..++..|+|+++++.++.+||++.....|.+.+++|.
T Consensus 5 ~~~~~~~~~la~d~~~~~lYw~D~~~~~I~~~~~~g~ 41 (43)
T smart00135 5 SEGLGHPNGLAVDWIEGRLYWTDWGLDVIEVANLDGT 41 (43)
T ss_pred ECCCCCcCEEEEeecCCEEEEEeCCCCEEEEEeCCCC
Confidence 4467789999999999999999999999999998763
No 139
>PRK02888 nitrous-oxide reductase; Validated
Probab=97.09 E-value=0.29 Score=48.36 Aligned_cols=106 Identities=12% Similarity=0.079 Sum_probs=62.3
Q ss_pred CCcccEEEccCC-cEEEEeCCCCCCCccccccccccCCCCeEEEEeCCCCe------------EEEeeccccccccEEEe
Q 018474 132 SFTNDVIAASDG-TLYFTVASTKYTPTDFYKDMAEGKPYGQLRKYDPKLKE------------TTVLHEGFYFANGIALS 198 (355)
Q Consensus 132 ~~~~~l~~d~dG-~ly~~d~~~~~~~~~~~~~~~~~~~~g~l~~~dp~~~~------------~~~~~~~~~~pngi~~~ 198 (355)
..|.++.++||| .+|+++.. ...+-.+|.++.+ +..-..-...|-..+|+
T Consensus 321 KsPHGV~vSPDGkylyVankl-----------------S~tVSVIDv~k~k~~~~~~~~~~~~vvaevevGlGPLHTaFD 383 (635)
T PRK02888 321 KNPHGVNTSPDGKYFIANGKL-----------------SPTVTVIDVRKLDDLFDGKIKPRDAVVAEPELGLGPLHTAFD 383 (635)
T ss_pred CCccceEECCCCCEEEEeCCC-----------------CCcEEEEEChhhhhhhhccCCccceEEEeeccCCCcceEEEC
Confidence 789999999999 57776543 2234445543322 11111223468889999
Q ss_pred CCCCEEEEEeCCCCeEEEEEeCCC----CCcceeEecccCC--CCcCce------EECCCCCEEEEeec
Q 018474 199 KNEDFVVVCESWKFRCRRYWLKGD----RAGILDAFIENLP--GGPDNI------NLAPDGSFWIGLIK 255 (355)
Q Consensus 199 ~dg~~l~v~~~~~~~i~~~~~~~~----~~~~~~~~~~~~~--g~p~~i------~~d~~G~lwv~~~~ 255 (355)
.+|+ .|.+=--.+.|.+|+++.. +-.......+..+ -.|.-+ ..+++|+++++.+.
T Consensus 384 g~G~-aytslf~dsqv~kwn~~~a~~~~~g~~~~~v~~k~dV~y~pgh~~~~~g~t~~~dgk~l~~~nk 451 (635)
T PRK02888 384 GRGN-AYTTLFLDSQIVKWNIEAAIRAYKGEKVDPIVQKLDVHYQPGHNHASMGETKEADGKWLVSLNK 451 (635)
T ss_pred CCCC-EEEeEeecceeEEEehHHHHHHhccccCCcceecccCCCccceeeecCCCcCCCCCCEEEEccc
Confidence 9997 8877766789999998531 0001111222111 112223 34889999999876
No 140
>KOG0263 consensus Transcription initiation factor TFIID, subunit TAF5 (also component of histone acetyltransferase SAGA) [Transcription]
Probab=97.07 E-value=0.087 Score=52.10 Aligned_cols=196 Identities=14% Similarity=0.127 Sum_probs=114.4
Q ss_pred CCcccCeEECCCCCEEEEeCCCcEEEEc-C-CC--eEEEcCCcCCcccEEEccCCcEEEEeCCCCCCCccccccccccCC
Q 018474 93 SQSLLGLTTTKDGGVILCDNEKGLLKVT-E-EG--VEAIVPDASFTNDVIAASDGTLYFTVASTKYTPTDFYKDMAEGKP 168 (355)
Q Consensus 93 ~~p~~gl~~d~~g~L~v~~~~~gl~~~~-~-~g--~~~~~~~~~~~~~l~~d~dG~ly~~d~~~~~~~~~~~~~~~~~~~ 168 (355)
+..+ |..+.++.++.+..+.++-.|+. . +- +-.+.....=+-++.+.|.|..+++-+. ..
T Consensus 452 GPVy-g~sFsPd~rfLlScSED~svRLWsl~t~s~~V~y~GH~~PVwdV~F~P~GyYFatas~---------------D~ 515 (707)
T KOG0263|consen 452 GPVY-GCSFSPDRRFLLSCSEDSSVRLWSLDTWSCLVIYKGHLAPVWDVQFAPRGYYFATASH---------------DQ 515 (707)
T ss_pred Ccee-eeeecccccceeeccCCcceeeeecccceeEEEecCCCcceeeEEecCCceEEEecCC---------------Cc
Confidence 4467 88888888888877666655554 2 22 2223322233556778888754444332 22
Q ss_pred CCeEEEEeCCCCeEEEeeccccccccEEEeCCCCEEEEEeCCCCeEEEEEeCCCCCcceeEecccCCCCcCceEECCCCC
Q 018474 169 YGQLRKYDPKLKETTVLHEGFYFANGIALSKNEDFVVVCESWKFRCRRYWLKGDRAGILDAFIENLPGGPDNINLAPDGS 248 (355)
Q Consensus 169 ~g~l~~~dp~~~~~~~~~~~~~~pngi~~~~dg~~l~v~~~~~~~i~~~~~~~~~~~~~~~~~~~~~g~p~~i~~d~~G~ 248 (355)
+.++|..|- +.-.+.++..+.--+.+.|+|+.+ ...+++....+..|++..+ ..++.|. +..+-...+++.+.|+
T Consensus 516 tArLWs~d~-~~PlRifaghlsDV~cv~FHPNs~-Y~aTGSsD~tVRlWDv~~G--~~VRiF~-GH~~~V~al~~Sp~Gr 590 (707)
T KOG0263|consen 516 TARLWSTDH-NKPLRIFAGHLSDVDCVSFHPNSN-YVATGSSDRTVRLWDVSTG--NSVRIFT-GHKGPVTALAFSPCGR 590 (707)
T ss_pred eeeeeeccc-CCchhhhcccccccceEEECCccc-ccccCCCCceEEEEEcCCC--cEEEEec-CCCCceEEEEEcCCCc
Confidence 446776653 333444555555566799999986 4455555666777776432 3456665 3334345678999997
Q ss_pred EEEEeecCCchhhHhhhcchhHHHHHHhccchhhcccCCCCCCceEEEEEeCCCCeEEEEEECCCCCcccceeEEEEe-C
Q 018474 249 FWIGLIKMNQTGVRAIQKCREKWELLDAYPGLISLLLPMGSDAGARVVKVDGNDGKIIRDFNDPDATYISFVTSAAEF-D 327 (355)
Q Consensus 249 lwv~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~g~~~~~~~~~~g~~~~~~~~~~~~-~ 327 (355)
+.++... .+-|...|-..|+.+..+..+.| .+.++.+. +
T Consensus 591 ~LaSg~e------------------------------------d~~I~iWDl~~~~~v~~l~~Ht~----ti~SlsFS~d 630 (707)
T KOG0263|consen 591 YLASGDE------------------------------------DGLIKIWDLANGSLVKQLKGHTG----TIYSLSFSRD 630 (707)
T ss_pred eEeeccc------------------------------------CCcEEEEEcCCCcchhhhhcccC----ceeEEEEecC
Confidence 6665433 13455556546666666655544 34445543 4
Q ss_pred CEEEEeecCCCeEEEeeCCCCC
Q 018474 328 GNLYLASLQSNFIGILPLDGPE 349 (355)
Q Consensus 328 g~L~v~~~~~~~i~~~~~~~~~ 349 (355)
|.+.+.+-..+.|...++....
T Consensus 631 g~vLasgg~DnsV~lWD~~~~~ 652 (707)
T KOG0263|consen 631 GNVLASGGADNSVRLWDLTKVI 652 (707)
T ss_pred CCEEEecCCCCeEEEEEchhhc
Confidence 6666666667777776655443
No 141
>KOG0293 consensus WD40 repeat-containing protein [Function unknown]
Probab=97.04 E-value=0.043 Score=50.54 Aligned_cols=154 Identities=10% Similarity=0.067 Sum_probs=92.6
Q ss_pred CCCCCCCceEEEeeCCCeEEEEecCCEEEEEEcCCCeeEEeecc--CCCcccCeEECCCCCEEEE-eCCCcEEEEcCCC-
Q 018474 48 EGCVNHPEDVSVVVSKGALYTATRDGWVKYFILHNETLVNWKHI--DSQSLLGLTTTKDGGVILC-DNEKGLLKVTEEG- 123 (355)
Q Consensus 48 ~~~~~~p~~i~~d~~~g~l~~~~~~g~i~~~~~~~g~~~~~~~~--~~~p~~gl~~d~~g~L~v~-~~~~gl~~~~~~g- 123 (355)
+|..+.-..|.+.|+++.|..+..+.-+..+|..+|...+.... +..+. +.++-+||.=+|+ ...++++..+.+|
T Consensus 266 vgh~~~V~yi~wSPDdryLlaCg~~e~~~lwDv~tgd~~~~y~~~~~~S~~-sc~W~pDg~~~V~Gs~dr~i~~wdlDgn 344 (519)
T KOG0293|consen 266 VGHSQPVSYIMWSPDDRYLLACGFDEVLSLWDVDTGDLRHLYPSGLGFSVS-SCAWCPDGFRFVTGSPDRTIIMWDLDGN 344 (519)
T ss_pred ecccCceEEEEECCCCCeEEecCchHheeeccCCcchhhhhcccCcCCCcc-eeEEccCCceeEecCCCCcEEEecCCcc
Confidence 35455666788888777777666666688888888865543322 34566 7788888865554 4445688887665
Q ss_pred -eEEEc-CCcCCcccEEEccCCc-EEEEeCCCCCCCccccccccccCCCCeEEEEeCCCCeEEEeeccccccccEEEeCC
Q 018474 124 -VEAIV-PDASFTNDVIAASDGT-LYFTVASTKYTPTDFYKDMAEGKPYGQLRKYDPKLKETTVLHEGFYFANGIALSKN 200 (355)
Q Consensus 124 -~~~~~-~~~~~~~~l~~d~dG~-ly~~d~~~~~~~~~~~~~~~~~~~~g~l~~~dp~~~~~~~~~~~~~~pngi~~~~d 200 (355)
..... .....+.++++.+||. ++..+.. -.+.-|+-.+..-+-+...-..-..+++|.|
T Consensus 345 ~~~~W~gvr~~~v~dlait~Dgk~vl~v~~d------------------~~i~l~~~e~~~dr~lise~~~its~~iS~d 406 (519)
T KOG0293|consen 345 ILGNWEGVRDPKVHDLAITYDGKYVLLVTVD------------------KKIRLYNREARVDRGLISEEQPITSFSISKD 406 (519)
T ss_pred hhhcccccccceeEEEEEcCCCcEEEEEecc------------------cceeeechhhhhhhccccccCceeEEEEcCC
Confidence 22221 1124688999999994 5443322 1233333322211111111222345789999
Q ss_pred CCEEEEEeCCCCeEEEEEeCC
Q 018474 201 EDFVVVCESWKFRCRRYWLKG 221 (355)
Q Consensus 201 g~~l~v~~~~~~~i~~~~~~~ 221 (355)
++ +...+...+.+..+|++.
T Consensus 407 ~k-~~LvnL~~qei~LWDl~e 426 (519)
T KOG0293|consen 407 GK-LALVNLQDQEIHLWDLEE 426 (519)
T ss_pred Cc-EEEEEcccCeeEEeecch
Confidence 98 555566788999999864
No 142
>PF13449 Phytase-like: Esterase-like activity of phytase
Probab=97.03 E-value=0.12 Score=47.63 Aligned_cols=156 Identities=14% Similarity=0.178 Sum_probs=88.3
Q ss_pred CCCCceEEEeeCCCeEEEEecCCE------EEEEEcCC--Ce---eE-----EeeccC--------CCcccCeEECCCCC
Q 018474 51 VNHPEDVSVVVSKGALYTATRDGW------VKYFILHN--ET---LV-----NWKHID--------SQSLLGLTTTKDGG 106 (355)
Q Consensus 51 ~~~p~~i~~d~~~g~l~~~~~~g~------i~~~~~~~--g~---~~-----~~~~~~--------~~p~~gl~~d~~g~ 106 (355)
+.+-.+|..++.++.+|+-+-+|. ++.+.... +. .. .+.... ..+. ||++.++|.
T Consensus 19 ~GGlSgl~~~~~~~~~~avSD~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~~~G~~~~~~~~D~E-gi~~~~~g~ 97 (326)
T PF13449_consen 19 FGGLSGLDYDPDDGRFYAVSDRGPNKGPPRFYTFRIDYDQGGIGGVTILDMIPLRDPDGQPFPKNGLDPE-GIAVPPDGS 97 (326)
T ss_pred cCcEeeEEEeCCCCEEEEEECCCCCCCCCcEEEEEeeccCCCccceEeccceeccCCCCCcCCcCCCChh-HeEEecCCC
Confidence 556688888866777877666666 66555422 11 11 111111 1466 899988999
Q ss_pred EEEEeC-C------CcEEEEcCCC--eEEE--cCC--------c-----CCcccEEEccCCc-EEEEeCCCCCCCccccc
Q 018474 107 VILCDN-E------KGLLKVTEEG--VEAI--VPD--------A-----SFTNDVIAASDGT-LYFTVASTKYTPTDFYK 161 (355)
Q Consensus 107 L~v~~~-~------~gl~~~~~~g--~~~~--~~~--------~-----~~~~~l~~d~dG~-ly~~d~~~~~~~~~~~~ 161 (355)
+||++= . ..|++++.+| .+.+ +.. . ....+|++.+||+ ||+...+....... ..
T Consensus 98 ~~is~E~~~~~~~~p~I~~~~~~G~~~~~~~vP~~~~~~~~~~~~~~~N~G~E~la~~~dG~~l~~~~E~~l~~d~~-~~ 176 (326)
T PF13449_consen 98 FWISSEGGRTGGIPPRIRRFDLDGRVIRRFPVPAAFLPDANGTSGRRNNRGFEGLAVSPDGRTLFAAMESPLKQDGP-RA 176 (326)
T ss_pred EEEEeCCccCCCCCCEEEEECCCCcccceEccccccccccCccccccCCCCeEEEEECCCCCEEEEEECccccCCCc-cc
Confidence 999863 3 4588888667 3433 111 1 4566799999996 89876542111100 00
Q ss_pred cccccCCCCeEEEEeCCCCe--EEEe---ec------cccccccEEEeCCCCEEEEEeCC
Q 018474 162 DMAEGKPYGQLRKYDPKLKE--TTVL---HE------GFYFANGIALSKNEDFVVVCESW 210 (355)
Q Consensus 162 ~~~~~~~~g~l~~~dp~~~~--~~~~---~~------~~~~pngi~~~~dg~~l~v~~~~ 210 (355)
.. .....-++++||+.+.. ...+ .+ ....+..++.-+|++ +++.|..
T Consensus 177 ~~-~~~~~~ri~~~d~~~~~~~~~~~~y~ld~~~~~~~~~~isd~~al~d~~-lLvLER~ 234 (326)
T PF13449_consen 177 NP-DNGSPLRILRYDPKTPGEPVAEYAYPLDPPPTAPGDNGISDIAALPDGR-LLVLERD 234 (326)
T ss_pred cc-ccCceEEEEEecCCCCCccceEEEEeCCccccccCCCCceeEEEECCCc-EEEEEcc
Confidence 00 11112478899987522 2222 22 122334466667887 7888865
No 143
>PF14870 PSII_BNR: Photosynthesis system II assembly factor YCF48; PDB: 2XBG_A.
Probab=97.03 E-value=0.24 Score=44.93 Aligned_cols=177 Identities=15% Similarity=0.161 Sum_probs=81.4
Q ss_pred ceEEEeeCCCeEEEEecCCEEEEEEcCCCeeEEeec---cCCCcccCeEECCCCCEEEEeCCCcEEEEcCCC--eEEEcC
Q 018474 55 EDVSVVVSKGALYTATRDGWVKYFILHNETLVNWKH---IDSQSLLGLTTTKDGGVILCDNEKGLLKVTEEG--VEAIVP 129 (355)
Q Consensus 55 ~~i~~d~~~g~l~~~~~~g~i~~~~~~~g~~~~~~~---~~~~p~~gl~~d~~g~L~v~~~~~gl~~~~~~g--~~~~~~ 129 (355)
.+|.+. +...|+....|.|++-.-....++++.. ..+.+. ++....++..+++...+.+|+-...| -+.+..
T Consensus 65 ~~I~f~--~~~g~ivG~~g~ll~T~DgG~tW~~v~l~~~lpgs~~-~i~~l~~~~~~l~~~~G~iy~T~DgG~tW~~~~~ 141 (302)
T PF14870_consen 65 NSISFD--GNEGWIVGEPGLLLHTTDGGKTWERVPLSSKLPGSPF-GITALGDGSAELAGDRGAIYRTTDGGKTWQAVVS 141 (302)
T ss_dssp EEEEEE--TTEEEEEEETTEEEEESSTTSS-EE----TT-SS-EE-EEEEEETTEEEEEETT--EEEESSTTSSEEEEE-
T ss_pred EEEEec--CCceEEEcCCceEEEecCCCCCcEEeecCCCCCCCee-EEEEcCCCcEEEEcCCCcEEEeCCCCCCeeEccc
Confidence 345554 4456766666755554432335665432 234566 66655566777777665677665544 444333
Q ss_pred C-cCCcccEEEccCCcEEEEeCCCCCCCccccccccccCCCCeEE-EEeCCCCeEEEeecc-ccccccEEEeCCCCEEEE
Q 018474 130 D-ASFTNDVIAASDGTLYFTVASTKYTPTDFYKDMAEGKPYGQLR-KYDPKLKETTVLHEG-FYFANGIALSKNEDFVVV 206 (355)
Q Consensus 130 ~-~~~~~~l~~d~dG~ly~~d~~~~~~~~~~~~~~~~~~~~g~l~-~~dp~~~~~~~~~~~-~~~pngi~~~~dg~~l~v 206 (355)
. ...++++...+||++....+ .|.+| .+||-...++..... ...-..+.+++|+. ||+
T Consensus 142 ~~~gs~~~~~r~~dG~~vavs~------------------~G~~~~s~~~G~~~w~~~~r~~~~riq~~gf~~~~~-lw~ 202 (302)
T PF14870_consen 142 ETSGSINDITRSSDGRYVAVSS------------------RGNFYSSWDPGQTTWQPHNRNSSRRIQSMGFSPDGN-LWM 202 (302)
T ss_dssp S----EEEEEE-TTS-EEEEET------------------TSSEEEEE-TT-SS-EEEE--SSS-EEEEEE-TTS--EEE
T ss_pred CCcceeEeEEECCCCcEEEEEC------------------cccEEEEecCCCccceEEccCccceehhceecCCCC-EEE
Confidence 3 36677788888997554433 23444 456643345554332 34456788999987 777
Q ss_pred EeCCCCeEEEEEeCCCCCccee-Eeccc-CCCC-cCceEECCCCCEEEEeec
Q 018474 207 CESWKFRCRRYWLKGDRAGILD-AFIEN-LPGG-PDNINLAPDGSFWIGLIK 255 (355)
Q Consensus 207 ~~~~~~~i~~~~~~~~~~~~~~-~~~~~-~~g~-p~~i~~d~~G~lwv~~~~ 255 (355)
... .+.|.+=+ ......+.. ...+. ..++ --.++..+++.+|++...
T Consensus 203 ~~~-Gg~~~~s~-~~~~~~~w~~~~~~~~~~~~~~ld~a~~~~~~~wa~gg~ 252 (302)
T PF14870_consen 203 LAR-GGQIQFSD-DPDDGETWSEPIIPIKTNGYGILDLAYRPPNEIWAVGGS 252 (302)
T ss_dssp EET-TTEEEEEE--TTEEEEE---B-TTSS--S-EEEEEESSSS-EEEEEST
T ss_pred EeC-CcEEEEcc-CCCCccccccccCCcccCceeeEEEEecCCCCEEEEeCC
Confidence 663 34454443 111111111 11111 1111 122467788899998865
No 144
>KOG2048 consensus WD40 repeat protein [General function prediction only]
Probab=97.01 E-value=0.33 Score=47.56 Aligned_cols=149 Identities=12% Similarity=0.015 Sum_probs=85.7
Q ss_pred CCCceEEEeeCCCeEEEEecCCEEEEEEcCCCee-EEeec--cCCCcccCeEECCCCCEEEEeCCCcEEEEcC-CC--eE
Q 018474 52 NHPEDVSVVVSKGALYTATRDGWVKYFILHNETL-VNWKH--IDSQSLLGLTTTKDGGVILCDNEKGLLKVTE-EG--VE 125 (355)
Q Consensus 52 ~~p~~i~~d~~~g~l~~~~~~g~i~~~~~~~g~~-~~~~~--~~~~p~~gl~~d~~g~L~v~~~~~gl~~~~~-~g--~~ 125 (355)
..-.++|...+.+.|-++-.+|.|-.+++..+=. +.+.+ ...++. +|++.+.|||+-....+.+..+|. ++ ..
T Consensus 26 s~I~slA~s~kS~~lAvsRt~g~IEiwN~~~~w~~~~vi~g~~drsIE-~L~W~e~~RLFS~g~sg~i~EwDl~~lk~~~ 104 (691)
T KOG2048|consen 26 SEIVSLAYSHKSNQLAVSRTDGNIEIWNLSNNWFLEPVIHGPEDRSIE-SLAWAEGGRLFSSGLSGSITEWDLHTLKQKY 104 (691)
T ss_pred cceEEEEEeccCCceeeeccCCcEEEEccCCCceeeEEEecCCCCcee-eEEEccCCeEEeecCCceEEEEecccCceeE
Confidence 3456778876778888888899999998866522 22222 223566 999998999998876666888884 55 22
Q ss_pred EEcCCcCCcccEEEccCCc-EEEEeCCCCCCCccccccccccCCCCeEEEEeCCCCeEEEee---ccccccccEEEeCCC
Q 018474 126 AIVPDASFTNDVIAASDGT-LYFTVASTKYTPTDFYKDMAEGKPYGQLRKYDPKLKETTVLH---EGFYFANGIALSKNE 201 (355)
Q Consensus 126 ~~~~~~~~~~~l~~d~dG~-ly~~d~~~~~~~~~~~~~~~~~~~~g~l~~~dp~~~~~~~~~---~~~~~pngi~~~~dg 201 (355)
.+......+-++++.+.+. +-++ ...|-++.++-..++++... ..-...-.+++++++
T Consensus 105 ~~d~~gg~IWsiai~p~~~~l~Ig------------------cddGvl~~~s~~p~~I~~~r~l~rq~sRvLslsw~~~~ 166 (691)
T KOG2048|consen 105 NIDSNGGAIWSIAINPENTILAIG------------------CDDGVLYDFSIGPDKITYKRSLMRQKSRVLSLSWNPTG 166 (691)
T ss_pred EecCCCcceeEEEeCCccceEEee------------------cCCceEEEEecCCceEEEEeecccccceEEEEEecCCc
Confidence 2222224455555555442 2222 11233444444444433211 111223456777887
Q ss_pred CEEEEEeCCCCeEEEEEeC
Q 018474 202 DFVVVCESWKFRCRRYWLK 220 (355)
Q Consensus 202 ~~l~v~~~~~~~i~~~~~~ 220 (355)
.. +++.+-.+.|..+|..
T Consensus 167 ~~-i~~Gs~Dg~Iriwd~~ 184 (691)
T KOG2048|consen 167 TK-IAGGSIDGVIRIWDVK 184 (691)
T ss_pred cE-EEecccCceEEEEEcC
Confidence 63 4555666678888874
No 145
>PF05787 DUF839: Bacterial protein of unknown function (DUF839); InterPro: IPR008557 This family consists of bacterial proteins of unknown function.
Probab=97.00 E-value=0.15 Score=50.09 Aligned_cols=161 Identities=17% Similarity=0.267 Sum_probs=86.6
Q ss_pred eEecCCCCCCCceEEE---eeCCCeEEEEec--CCEEEEEEcCCCeeEEeeccCCCcccCeEECCCCCEEEEeCCC-c--
Q 018474 44 TKLGEGCVNHPEDVSV---VVSKGALYTATR--DGWVKYFILHNETLVNWKHIDSQSLLGLTTTKDGGVILCDNEK-G-- 115 (355)
Q Consensus 44 ~~~~~~~~~~p~~i~~---d~~~g~l~~~~~--~g~i~~~~~~~g~~~~~~~~~~~p~~gl~~d~~g~L~v~~~~~-g-- 115 (355)
.+...|. ..-|..++ ++....+|++.- ++.||||-++ ...... .... ....-.+|+||++...+ +
T Consensus 237 K~tAlGR-f~HE~a~v~~~~~~~~vvY~gDD~~~~~lYkFVs~-~~~~~~----~~~~-~~~ll~~GtLyaak~~~~g~~ 309 (524)
T PF05787_consen 237 KRTALGR-FAHEAAAVVLADPGRVVVYMGDDGRNGYLYKFVSD-KPWDPG----DRAA-NRDLLDEGTLYAAKFNQDGTG 309 (524)
T ss_pred ceeeccc-ccccceeEEeecCCeEEEEEEecCCCCeEEEEecC-CCCCCc----ccch-hhhhhhCCEeceEEECCCCcE
Confidence 4555664 57778888 645567888753 5778888762 221110 0011 11222466666664331 1
Q ss_pred -EEEEc-CC-------C------e--E-EEc------CCcCCcccEEEcc-CCcEEEEeCCCCCC-Ccc-ccccccccCC
Q 018474 116 -LLKVT-EE-------G------V--E-AIV------PDASFTNDVIAAS-DGTLYFTVASTKYT-PTD-FYKDMAEGKP 168 (355)
Q Consensus 116 -l~~~~-~~-------g------~--~-~~~------~~~~~~~~l~~d~-dG~ly~~d~~~~~~-~~~-~~~~~~~~~~ 168 (355)
-+.+. .. + + . +.+ .....|.++.+++ +|.+||+-+...-. ... ..........
T Consensus 310 ~Wv~L~~~~~~l~~~~~~~~~a~v~~~tr~aA~~~GAT~f~RpEgi~~~p~~g~vY~a~T~~~~r~~~~~~~~n~~~~n~ 389 (524)
T PF05787_consen 310 EWVPLGHGQGGLTAKNGFADQADVLIETRRAADAVGATPFDRPEGITVNPDDGEVYFALTNNSGRGESDVDAANPRAGNG 389 (524)
T ss_pred EEEECCCcccccccCCCCCChHHhhhhhhhccccCccccccCccCeeEeCCCCEEEEEEecCCCCcccccccCCcccCCc
Confidence 11111 00 0 0 0 000 1127889999998 47999986542100 000 0111112345
Q ss_pred CCeEEEEeCCCC-------eEEEeec------------------cccccccEEEeCCCCEEEEEeCCCC
Q 018474 169 YGQLRKYDPKLK-------ETTVLHE------------------GFYFANGIALSKNEDFVVVCESWKF 212 (355)
Q Consensus 169 ~g~l~~~dp~~~-------~~~~~~~------------------~~~~pngi~~~~dg~~l~v~~~~~~ 212 (355)
.|.|++|++..+ +++.+.. .+..|.+|+++++|+ ||+++....
T Consensus 390 ~G~I~r~~~~~~d~~~~~f~~~~~~~~g~~~~~~~~~~~~~~~~~f~sPDNL~~d~~G~-LwI~eD~~~ 457 (524)
T PF05787_consen 390 YGQIYRYDPDGNDHAATTFTWELFLVGGDPTDASGNGSNKCDDNGFASPDNLAFDPDGN-LWIQEDGGG 457 (524)
T ss_pred ccEEEEecccCCccccceeEEEEEEEecCcccccccccCcccCCCcCCCCceEECCCCC-EEEEeCCCC
Confidence 688999998766 4444321 145799999999998 888876543
No 146
>KOG0278 consensus Serine/threonine kinase receptor-associated protein [Lipid transport and metabolism]
Probab=97.00 E-value=0.022 Score=49.03 Aligned_cols=174 Identities=13% Similarity=0.161 Sum_probs=92.0
Q ss_pred eEEEeeCCCeEEEEecCCEEEEEEcCCC--eeEEeeccCCCcccCeE---E-CCCCCEEEEeCCCcEEEEc-CCC--eEE
Q 018474 56 DVSVVVSKGALYTATRDGWVKYFILHNE--TLVNWKHIDSQSLLGLT---T-TKDGGVILCDNEKGLLKVT-EEG--VEA 126 (355)
Q Consensus 56 ~i~~d~~~g~l~~~~~~g~i~~~~~~~g--~~~~~~~~~~~p~~gl~---~-d~~g~L~v~~~~~gl~~~~-~~g--~~~ 126 (355)
+++++.+..+|..+..+.-+..+|.+.. ..+++. +++. +|. + ..+..+.-+...+.+...| .+| ++.
T Consensus 105 ~~af~~ds~~lltgg~ekllrvfdln~p~App~E~~---ghtg-~Ir~v~wc~eD~~iLSSadd~tVRLWD~rTgt~v~s 180 (334)
T KOG0278|consen 105 AVAFSQDSNYLLTGGQEKLLRVFDLNRPKAPPKEIS---GHTG-GIRTVLWCHEDKCILSSADDKTVRLWDHRTGTEVQS 180 (334)
T ss_pred eEEecccchhhhccchHHHhhhhhccCCCCCchhhc---CCCC-cceeEEEeccCceEEeeccCCceEEEEeccCcEEEE
Confidence 3445544555666655553344443222 222322 2333 332 2 3444555443233343445 466 444
Q ss_pred EcCCcCCcccEEEccCCcEEEEeCCCCCCCccccccccccCCCCeEEEEeCCCCeEEEeeccccccccEEEeCCCCEEEE
Q 018474 127 IVPDASFTNDVIAASDGTLYFTVASTKYTPTDFYKDMAEGKPYGQLRKYDPKLKETTVLHEGFYFANGIALSKNEDFVVV 206 (355)
Q Consensus 127 ~~~~~~~~~~l~~d~dG~ly~~d~~~~~~~~~~~~~~~~~~~~g~l~~~dp~~~~~~~~~~~~~~pngi~~~~dg~~l~v 206 (355)
+-.+ ..++++-+.++|++..+.. .+.+-.+|+++-+.-.-..-...-+...++|+.. +||
T Consensus 181 L~~~-s~VtSlEvs~dG~ilTia~------------------gssV~Fwdaksf~~lKs~k~P~nV~SASL~P~k~-~fV 240 (334)
T KOG0278|consen 181 LEFN-SPVTSLEVSQDGRILTIAY------------------GSSVKFWDAKSFGLLKSYKMPCNVESASLHPKKE-FFV 240 (334)
T ss_pred EecC-CCCcceeeccCCCEEEEec------------------CceeEEeccccccceeeccCccccccccccCCCc-eEE
Confidence 4333 5688999999998765422 2357777876543322222233345567889885 889
Q ss_pred EeCCCCeEEEEEeCCCCCcceeEecccCCCCcCceEECCCCCEEEEeec
Q 018474 207 CESWKFRCRRYWLKGDRAGILDAFIENLPGGPDNINLAPDGSFWIGLIK 255 (355)
Q Consensus 207 ~~~~~~~i~~~~~~~~~~~~~~~~~~~~~g~p~~i~~d~~G~lwv~~~~ 255 (355)
+.-....+++||..... +...+..+.+|-.--+.+.++|.+|.+-..
T Consensus 241 aGged~~~~kfDy~Tge--Ei~~~nkgh~gpVhcVrFSPdGE~yAsGSE 287 (334)
T KOG0278|consen 241 AGGEDFKVYKFDYNTGE--EIGSYNKGHFGPVHCVRFSPDGELYASGSE 287 (334)
T ss_pred ecCcceEEEEEeccCCc--eeeecccCCCCceEEEEECCCCceeeccCC
Confidence 88777889999985421 122222233332233567777777765544
No 147
>TIGR03075 PQQ_enz_alc_DH PQQ-dependent dehydrogenase, methanol/ethanol family. This protein family has a phylogenetic distribution very similar to that coenzyme PQQ biosynthesis enzymes, as shown by partial phylogenetic profiling. Genes in this family often are found adjacent to the PQQ biosynthesis genes themselves. An unusual, strained disulfide bond between adjacent Cys residues contributes to PQQ-binding, as does a Trp residue that is part of a PQQ enzyme repeat (see pfam01011). Characterized members include the dehydrogenase subunit of a membrane-anchored, three subunit alcohol (ethanol) dehydrogenase of Gluconobacter suboxydans, a homodimeric ethanol dehydrogenase in Pseudomonas aeruginosa, and the large subunit of an alpha2/beta2 heterotetrameric methanol dehydrogenase in Methylobacterium extorquens.
Probab=96.99 E-value=0.43 Score=47.13 Aligned_cols=44 Identities=23% Similarity=0.257 Sum_probs=29.4
Q ss_pred CceEEEEEeCCCCeEEEEEECCCCCcccceeEEEEeCCEEEEeecC
Q 018474 291 AGARVVKVDGNDGKIIRDFNDPDATYISFVTSAAEFDGNLYLASLQ 336 (355)
Q Consensus 291 ~~~~v~~~~~~~g~~~~~~~~~~g~~~~~~~~~~~~~g~L~v~~~~ 336 (355)
..+.+.+||.++|+.+-.+..+.+.....+ ....+|++|+....
T Consensus 480 ~~G~l~a~D~~TGe~lw~~~~g~~~~a~P~--ty~~~G~qYv~~~~ 523 (527)
T TIGR03075 480 LEGYFKAFDAKTGEELWKFKTGSGIVGPPV--TYEQDGKQYVAVLS 523 (527)
T ss_pred CCCeEEEEECCCCCEeEEEeCCCCceecCE--EEEeCCEEEEEEEe
Confidence 346789999889998888876544222222 23468999997653
No 148
>KOG1274 consensus WD40 repeat protein [General function prediction only]
Probab=96.99 E-value=0.29 Score=49.55 Aligned_cols=171 Identities=10% Similarity=0.116 Sum_probs=100.1
Q ss_pred CCeEEEEecCCEEEEEEcCCCeeEEe-eccCCCcccCeEECCCCCEEEEeCCC-cEEEEc-CCC--eEEEcCCcCCcccE
Q 018474 63 KGALYTATRDGWVKYFILHNETLVNW-KHIDSQSLLGLTTTKDGGVILCDNEK-GLLKVT-EEG--VEAIVPDASFTNDV 137 (355)
Q Consensus 63 ~g~l~~~~~~g~i~~~~~~~g~~~~~-~~~~~~p~~gl~~d~~g~L~v~~~~~-gl~~~~-~~g--~~~~~~~~~~~~~l 137 (355)
.+.|.+++.++.|.++....++...+ ....-... .++++.+|+..++.... .+-.++ .++ .+.+.....-+-++
T Consensus 66 s~~f~~~s~~~tv~~y~fps~~~~~iL~Rftlp~r-~~~v~g~g~~iaagsdD~~vK~~~~~D~s~~~~lrgh~apVl~l 144 (933)
T KOG1274|consen 66 SNHFLTGSEQNTVLRYKFPSGEEDTILARFTLPIR-DLAVSGSGKMIAAGSDDTAVKLLNLDDSSQEKVLRGHDAPVLQL 144 (933)
T ss_pred ccceEEeeccceEEEeeCCCCCccceeeeeeccce-EEEEecCCcEEEeecCceeEEEEeccccchheeecccCCceeee
Confidence 45677778888888887655543311 11122345 78898888877765543 455555 344 44443333567788
Q ss_pred EEccCCcEEEEeCCCCCCCccccccccccCCCCeEEEEeCCCCeEEEeecccc---------ccccEEEeCCCCEEEEEe
Q 018474 138 IAASDGTLYFTVASTKYTPTDFYKDMAEGKPYGQLRKYDPKLKETTVLHEGFY---------FANGIALSKNEDFVVVCE 208 (355)
Q Consensus 138 ~~d~dG~ly~~d~~~~~~~~~~~~~~~~~~~~g~l~~~dp~~~~~~~~~~~~~---------~pngi~~~~dg~~l~v~~ 208 (355)
..+|+|++....+. +|.|+.||..++.......++. .-.-++++|++..+.+..
T Consensus 145 ~~~p~~~fLAvss~-----------------dG~v~iw~~~~~~~~~tl~~v~k~n~~~~s~i~~~~aW~Pk~g~la~~~ 207 (933)
T KOG1274|consen 145 SYDPKGNFLAVSSC-----------------DGKVQIWDLQDGILSKTLTGVDKDNEFILSRICTRLAWHPKGGTLAVPP 207 (933)
T ss_pred eEcCCCCEEEEEec-----------------CceEEEEEcccchhhhhcccCCccccccccceeeeeeecCCCCeEEeec
Confidence 99999988776443 6788889887776543333221 113468999976566655
Q ss_pred CCCCeEEEEEeCCCCCcceeEecccCC-CCcCceEECCCCCEEEEee
Q 018474 209 SWKFRCRRYWLKGDRAGILDAFIENLP-GGPDNINLAPDGSFWIGLI 254 (355)
Q Consensus 209 ~~~~~i~~~~~~~~~~~~~~~~~~~~~-g~p~~i~~d~~G~lwv~~~ 254 (355)
. ++.|..|+.++-. ..+. +.+... .--.-+.+++.|.+..+..
T Consensus 208 ~-d~~Vkvy~r~~we-~~f~-Lr~~~~ss~~~~~~wsPnG~YiAAs~ 251 (933)
T KOG1274|consen 208 V-DNTVKVYSRKGWE-LQFK-LRDKLSSSKFSDLQWSPNGKYIAAST 251 (933)
T ss_pred c-CCeEEEEccCCce-ehee-ecccccccceEEEEEcCCCcEEeeec
Confidence 4 6789999875521 1111 111111 1122356788886555443
No 149
>COG3211 PhoX Predicted phosphatase [General function prediction only]
Probab=96.97 E-value=0.0079 Score=57.69 Aligned_cols=153 Identities=16% Similarity=0.165 Sum_probs=76.8
Q ss_pred eEecCCCCCCCceEEEeeCCCeEEEEecCCEEEEEE-------cCCCeeEEeeccCCCcc-cCeEECCCCCEEEEeCCCc
Q 018474 44 TKLGEGCVNHPEDVSVVVSKGALYTATRDGWVKYFI-------LHNETLVNWKHIDSQSL-LGLTTTKDGGVILCDNEKG 115 (355)
Q Consensus 44 ~~~~~~~~~~p~~i~~d~~~g~l~~~~~~g~i~~~~-------~~~g~~~~~~~~~~~p~-~gl~~d~~g~L~v~~~~~g 115 (355)
..++--.+..||+|++.+..+.+|+...++.=..-| ..-|++.+|....+.-. +-..+ .||+-.....
T Consensus 409 ~~lGAT~mdRpE~i~~~p~~g~Vy~~lTNn~~r~~~~aNpr~~n~~G~I~r~~p~~~d~t~~~ftW----dlF~~aG~~~ 484 (616)
T COG3211 409 DKLGATPMDRPEWIAVNPGTGEVYFTLTNNGKRSDDAANPRAKNGYGQIVRWIPATGDHTDTKFTW----DLFVEAGNPS 484 (616)
T ss_pred HHhCCccccCccceeecCCcceEEEEeCCCCccccccCCCcccccccceEEEecCCCCccCcccee----eeeeecCCcc
Confidence 445555678999999998888899876654311000 01123333332211000 00001 1222111111
Q ss_pred EEEEcCCC-eEEEcCCcCCcccEEEccCCcEEEEeCCCCCCCccccccccccCCCCeEEEEeCCCCeEEEeeccc--ccc
Q 018474 116 LLKVTEEG-VEAIVPDASFTNDVIAASDGTLYFTVASTKYTPTDFYKDMAEGKPYGQLRKYDPKLKETTVLHEGF--YFA 192 (355)
Q Consensus 116 l~~~~~~g-~~~~~~~~~~~~~l~~d~dG~ly~~d~~~~~~~~~~~~~~~~~~~~g~l~~~dp~~~~~~~~~~~~--~~p 192 (355)
........ +.. .-+..|..|++|+.|+||+.+....-...+.. .+ ...+..=+|++++++.+..+. ..-
T Consensus 485 ~~~~~~~~~~~~--~~f~~PDnl~fD~~GrLWi~TDg~~s~~~~~~----~G--~~~m~~~~p~~g~~~rf~t~P~g~E~ 556 (616)
T COG3211 485 VLEGGASANINA--NWFNSPDNLAFDPWGRLWIQTDGSGSTLRNRF----RG--VTQMLTPDPKTGTIKRFLTGPIGCEF 556 (616)
T ss_pred ccccccccCccc--ccccCCCceEECCCCCEEEEecCCCCccCccc----cc--ccccccCCCccceeeeeccCCCccee
Confidence 11111000 111 22367999999999999997654210010100 00 012333466777777665443 345
Q ss_pred ccEEEeCCCCEEEEEe
Q 018474 193 NGIALSKNEDFVVVCE 208 (355)
Q Consensus 193 ngi~~~~dg~~l~v~~ 208 (355)
.|.+++||++.+++.-
T Consensus 557 tG~~FspD~~TlFV~v 572 (616)
T COG3211 557 TGPCFSPDGKTLFVNV 572 (616)
T ss_pred ecceeCCCCceEEEEe
Confidence 6899999999888863
No 150
>KOG0285 consensus Pleiotropic regulator 1 [RNA processing and modification]
Probab=96.96 E-value=0.19 Score=45.63 Aligned_cols=157 Identities=13% Similarity=0.068 Sum_probs=90.3
Q ss_pred eEecCCCCCCCceEEEeeCCCeEEE-EecCCEEEEEEcCCCeeEEeecc-CCCcccCeEECCCC-CEEEEeCCCcEEEEc
Q 018474 44 TKLGEGCVNHPEDVSVVVSKGALYT-ATRDGWVKYFILHNETLVNWKHI-DSQSLLGLTTTKDG-GVILCDNEKGLLKVT 120 (355)
Q Consensus 44 ~~~~~~~~~~p~~i~~d~~~g~l~~-~~~~g~i~~~~~~~g~~~~~~~~-~~~p~~gl~~d~~g-~L~v~~~~~gl~~~~ 120 (355)
.++..|.+..-.++++|| ++.+|+ ++.|+.|-.+|..+|+++..... ..... ++++.... .||-+.-.+.+-++|
T Consensus 144 ~rVi~gHlgWVr~vavdP-~n~wf~tgs~DrtikIwDlatg~LkltltGhi~~vr-~vavS~rHpYlFs~gedk~VKCwD 221 (460)
T KOG0285|consen 144 YRVISGHLGWVRSVAVDP-GNEWFATGSADRTIKIWDLATGQLKLTLTGHIETVR-GVAVSKRHPYLFSAGEDKQVKCWD 221 (460)
T ss_pred hhhhhhccceEEEEeeCC-CceeEEecCCCceeEEEEcccCeEEEeecchhheee-eeeecccCceEEEecCCCeeEEEe
Confidence 345567778899999995 555555 56689999999999988754431 23355 78886443 344444334466777
Q ss_pred -C-CC-eEEEcCCcCCcccEEEccCCcEEEEeCCCCCCCccccccccccCCCCeEEEEeCCCCeEEEeecccccc-ccEE
Q 018474 121 -E-EG-VEAIVPDASFTNDVIAASDGTLYFTVASTKYTPTDFYKDMAEGKPYGQLRKYDPKLKETTVLHEGFYFA-NGIA 196 (355)
Q Consensus 121 -~-~g-~~~~~~~~~~~~~l~~d~dG~ly~~d~~~~~~~~~~~~~~~~~~~~g~l~~~dp~~~~~~~~~~~~~~p-ngi~ 196 (355)
. +. ++.+......+..+...|.-.+.++.+. .-.+-.||-.++.-.....+...| +.+.
T Consensus 222 Le~nkvIR~YhGHlS~V~~L~lhPTldvl~t~gr-----------------Dst~RvWDiRtr~~V~~l~GH~~~V~~V~ 284 (460)
T KOG0285|consen 222 LEYNKVIRHYHGHLSGVYCLDLHPTLDVLVTGGR-----------------DSTIRVWDIRTRASVHVLSGHTNPVASVM 284 (460)
T ss_pred chhhhhHHHhccccceeEEEeccccceeEEecCC-----------------cceEEEeeecccceEEEecCCCCcceeEE
Confidence 3 33 5555555567777877776666666443 123444555444322222222222 1222
Q ss_pred EeC-CCCEEEEEeCCCCeEEEEEeCC
Q 018474 197 LSK-NEDFVVVCESWKFRCRRYWLKG 221 (355)
Q Consensus 197 ~~~-dg~~l~v~~~~~~~i~~~~~~~ 221 (355)
+.+ |.+ + ++.+....|..+|+..
T Consensus 285 ~~~~dpq-v-it~S~D~tvrlWDl~a 308 (460)
T KOG0285|consen 285 CQPTDPQ-V-ITGSHDSTVRLWDLRA 308 (460)
T ss_pred eecCCCc-e-EEecCCceEEEeeecc
Confidence 222 333 3 4455667787788754
No 151
>PTZ00420 coronin; Provisional
Probab=96.95 E-value=0.48 Score=47.01 Aligned_cols=110 Identities=6% Similarity=-0.072 Sum_probs=66.2
Q ss_pred CCcccCeEECCC-CCEEEEeCCCcEEEE-c-CCC---eE-------EEcCCcCCcccEEEccCCcEE-EEeCCCCCCCcc
Q 018474 93 SQSLLGLTTTKD-GGVILCDNEKGLLKV-T-EEG---VE-------AIVPDASFTNDVIAASDGTLY-FTVASTKYTPTD 158 (355)
Q Consensus 93 ~~p~~gl~~d~~-g~L~v~~~~~gl~~~-~-~~g---~~-------~~~~~~~~~~~l~~d~dG~ly-~~d~~~~~~~~~ 158 (355)
..+. .+++.++ ++++++...++.+++ + +++ .+ .+......+++++++|++... ++.+.
T Consensus 75 ~~V~-~lafsP~~~~lLASgS~DgtIrIWDi~t~~~~~~~i~~p~~~L~gH~~~V~sVaf~P~g~~iLaSgS~------- 146 (568)
T PTZ00420 75 SSIL-DLQFNPCFSEILASGSEDLTIRVWEIPHNDESVKEIKDPQCILKGHKKKISIIDWNPMNYYIMCSSGF------- 146 (568)
T ss_pred CCEE-EEEEcCCCCCEEEEEeCCCeEEEEECCCCCccccccccceEEeecCCCcEEEEEECCCCCeEEEEEeC-------
Confidence 3466 8888875 566665555554444 4 332 11 122222568889999988543 44322
Q ss_pred ccccccccCCCCeEEEEeCCCCeEEEeeccccccccEEEeCCCCEEEEEeCCCCeEEEEEeCC
Q 018474 159 FYKDMAEGKPYGQLRKYDPKLKETTVLHEGFYFANGIALSKNEDFVVVCESWKFRCRRYWLKG 221 (355)
Q Consensus 159 ~~~~~~~~~~~g~l~~~dp~~~~~~~~~~~~~~pngi~~~~dg~~l~v~~~~~~~i~~~~~~~ 221 (355)
.+.+..||..+++.............+++++||+.+ ++....+.|..|++..
T Consensus 147 ----------DgtIrIWDl~tg~~~~~i~~~~~V~SlswspdG~lL-at~s~D~~IrIwD~Rs 198 (568)
T PTZ00420 147 ----------DSFVNIWDIENEKRAFQINMPKKLSSLKWNIKGNLL-SGTCVGKHMHIIDPRK 198 (568)
T ss_pred ----------CCeEEEEECCCCcEEEEEecCCcEEEEEECCCCCEE-EEEecCCEEEEEECCC
Confidence 456888888776543222222335678999999954 5544567888899854
No 152
>KOG0303 consensus Actin-binding protein Coronin, contains WD40 repeats [Cytoskeleton]
Probab=96.94 E-value=0.032 Score=51.05 Aligned_cols=160 Identities=14% Similarity=0.195 Sum_probs=94.7
Q ss_pred CCCCCCCceEEEeeC-CCeEEEEecCCEEEEEEcCCCeeEEeeccCCCcccCeEECCCCCEEEEeCCCcEEE-EcC-CC-
Q 018474 48 EGCVNHPEDVSVVVS-KGALYTATRDGWVKYFILHNETLVNWKHIDSQSLLGLTTTKDGGVILCDNEKGLLK-VTE-EG- 123 (355)
Q Consensus 48 ~~~~~~p~~i~~d~~-~g~l~~~~~~g~i~~~~~~~g~~~~~~~~~~~p~~gl~~d~~g~L~v~~~~~gl~~-~~~-~g- 123 (355)
+|.-..--.++++|- .+.|..+..+..|..+|..+|+...-......++ ++.+..+|.+++++..+.-+| +++ +|
T Consensus 128 ~gH~rrVg~V~wHPtA~NVLlsag~Dn~v~iWnv~tgeali~l~hpd~i~-S~sfn~dGs~l~TtckDKkvRv~dpr~~~ 206 (472)
T KOG0303|consen 128 YGHQRRVGLVQWHPTAPNVLLSAGSDNTVSIWNVGTGEALITLDHPDMVY-SMSFNRDGSLLCTTCKDKKVRVIDPRRGT 206 (472)
T ss_pred eecceeEEEEeecccchhhHhhccCCceEEEEeccCCceeeecCCCCeEE-EEEeccCCceeeeecccceeEEEcCCCCc
Confidence 343344445566653 3445566678889999998887544333445577 889999999999987755444 454 66
Q ss_pred e-EEE-cCCcCCcccEEEccCCcEEEEeCCCCCCCccccccccccCCCCeEEEEeCCCCeEEEeeccccccccEE---Ee
Q 018474 124 V-EAI-VPDASFTNDVIAASDGTLYFTVASTKYTPTDFYKDMAEGKPYGQLRKYDPKLKETTVLHEGFYFANGIA---LS 198 (355)
Q Consensus 124 ~-~~~-~~~~~~~~~l~~d~dG~ly~~d~~~~~~~~~~~~~~~~~~~~g~l~~~dp~~~~~~~~~~~~~~pngi~---~~ 198 (355)
+ ..- ......+.-..+-.+|.+. ++.-++.+ ...+-.|||+.-+.-.....+-..||+. ++
T Consensus 207 ~v~e~~~heG~k~~Raifl~~g~i~-tTGfsr~s-------------eRq~aLwdp~nl~eP~~~~elDtSnGvl~PFyD 272 (472)
T KOG0303|consen 207 VVSEGVAHEGAKPARAIFLASGKIF-TTGFSRMS-------------ERQIALWDPNNLEEPIALQELDTSNGVLLPFYD 272 (472)
T ss_pred EeeecccccCCCcceeEEeccCcee-eecccccc-------------ccceeccCcccccCcceeEEeccCCceEEeeec
Confidence 3 222 1122445555666677643 33322211 1223345554322211222333455554 57
Q ss_pred CCCCEEEEEeCCCCeEEEEEeCCC
Q 018474 199 KNEDFVVVCESWKFRCRRYWLKGD 222 (355)
Q Consensus 199 ~dg~~l~v~~~~~~~i~~~~~~~~ 222 (355)
+|.+.+|++.-+.+.|..|.++..
T Consensus 273 ~dt~ivYl~GKGD~~IRYyEit~d 296 (472)
T KOG0303|consen 273 PDTSIVYLCGKGDSSIRYFEITNE 296 (472)
T ss_pred CCCCEEEEEecCCcceEEEEecCC
Confidence 899999999999999998888653
No 153
>KOG0273 consensus Beta-transducin family (WD-40 repeat) protein [Chromatin structure and dynamics]
Probab=96.89 E-value=0.4 Score=45.08 Aligned_cols=236 Identities=12% Similarity=0.143 Sum_probs=121.9
Q ss_pred eEEEeeCCCeEEEEecCCEEEEEEcCCCeeEEeeccCCCcccCeEECC-CCCEEEEeCCCc---EEEEcCCC-eEEEcCC
Q 018474 56 DVSVVVSKGALYTATRDGWVKYFILHNETLVNWKHIDSQSLLGLTTTK-DGGVILCDNEKG---LLKVTEEG-VEAIVPD 130 (355)
Q Consensus 56 ~i~~d~~~g~l~~~~~~g~i~~~~~~~g~~~~~~~~~~~p~~gl~~d~-~g~L~v~~~~~g---l~~~~~~g-~~~~~~~ 130 (355)
++-+...+..+..+..+|.+..+|..+|+.++.-.....| ++-+|- +..=+++....+ +++++.++ ++.+...
T Consensus 281 slKWnk~G~yilS~~vD~ttilwd~~~g~~~q~f~~~s~~--~lDVdW~~~~~F~ts~td~~i~V~kv~~~~P~~t~~GH 358 (524)
T KOG0273|consen 281 SLKWNKKGTYILSGGVDGTTILWDAHTGTVKQQFEFHSAP--ALDVDWQSNDEFATSSTDGCIHVCKVGEDRPVKTFIGH 358 (524)
T ss_pred EEEEcCCCCEEEeccCCccEEEEeccCceEEEeeeeccCC--ccceEEecCceEeecCCCceEEEEEecCCCcceeeecc
Confidence 5556644555666777899999998888765432222223 233331 222334333333 44455455 5555545
Q ss_pred cCCcccEEEccCCcEEEEeCCCCCCCccccccccccCCCCeEEEEeCCCCeEEEeeccccccc-cEEEeCCCCEEEEEeC
Q 018474 131 ASFTNDVIAASDGTLYFTVASTKYTPTDFYKDMAEGKPYGQLRKYDPKLKETTVLHEGFYFAN-GIALSKNEDFVVVCES 209 (355)
Q Consensus 131 ~~~~~~l~~d~dG~ly~~d~~~~~~~~~~~~~~~~~~~~g~l~~~dp~~~~~~~~~~~~~~pn-gi~~~~dg~~l~v~~~ 209 (355)
...++.+-.++.|.|..+-+. +....+|.....+.+-++..-++++.... ..|. .+.-.|..+....+..
T Consensus 359 ~g~V~alk~n~tg~LLaS~Sd------D~TlkiWs~~~~~~~~~l~~Hskei~t~~---wsp~g~v~~n~~~~~~l~sas 429 (524)
T KOG0273|consen 359 HGEVNALKWNPTGSLLASCSD------DGTLKIWSMGQSNSVHDLQAHSKEIYTIK---WSPTGPVTSNPNMNLMLASAS 429 (524)
T ss_pred cCceEEEEECCCCceEEEecC------CCeeEeeecCCCcchhhhhhhccceeeEe---ecCCCCccCCCcCCceEEEee
Confidence 578999999999998887654 12233333222222222222222222211 1111 1122232232334444
Q ss_pred CCCeEEEEEeCCCCCcceeEecccCCCCcCceEECCCCCEEEEeecCCchhhHhhhcchhHHHHHHhccchhhcccCCCC
Q 018474 210 WKFRCRRYWLKGDRAGILDAFIENLPGGPDNINLAPDGSFWIGLIKMNQTGVRAIQKCREKWELLDAYPGLISLLLPMGS 289 (355)
Q Consensus 210 ~~~~i~~~~~~~~~~~~~~~~~~~~~g~p~~i~~d~~G~lwv~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 289 (355)
..+.|..|++.... ...+|.. ...--..+.+.++|++...-.-
T Consensus 430 ~dstV~lwdv~~gv--~i~~f~k-H~~pVysvafS~~g~ylAsGs~---------------------------------- 472 (524)
T KOG0273|consen 430 FDSTVKLWDVESGV--PIHTLMK-HQEPVYSVAFSPNGRYLASGSL---------------------------------- 472 (524)
T ss_pred cCCeEEEEEccCCc--eeEeecc-CCCceEEEEecCCCcEEEecCC----------------------------------
Confidence 56777788874321 1222321 1111245778888976554322
Q ss_pred CCceEEEEEeCCCCeEEEEEECCCCCcccceeEEEE-eCCEEEEeecCCCeEEEeeCC
Q 018474 290 DAGARVVKVDGNDGKIIRDFNDPDATYISFVTSAAE-FDGNLYLASLQSNFIGILPLD 346 (355)
Q Consensus 290 ~~~~~v~~~~~~~g~~~~~~~~~~g~~~~~~~~~~~-~~g~L~v~~~~~~~i~~~~~~ 346 (355)
.++|...+.+.|+.+..|.+..| +..++- .+|....+.....-+-+++++
T Consensus 473 --dg~V~iws~~~~~l~~s~~~~~~-----Ifel~Wn~~G~kl~~~~sd~~vcvldlr 523 (524)
T KOG0273|consen 473 --DGCVHIWSTKTGKLVKSYQGTGG-----IFELCWNAAGDKLGACASDGSVCVLDLR 523 (524)
T ss_pred --CCeeEeccccchheeEeecCCCe-----EEEEEEcCCCCEEEEEecCCCceEEEec
Confidence 24666666668888888877554 334443 235555666666666666654
No 154
>KOG0643 consensus Translation initiation factor 3, subunit i (eIF-3i)/TGF-beta receptor-interacting protein (TRIP-1) [Translation, ribosomal structure and biogenesis; Signal transduction mechanisms]
Probab=96.89 E-value=0.26 Score=43.03 Aligned_cols=160 Identities=14% Similarity=0.117 Sum_probs=97.3
Q ss_pred CceEecC--CCCCCCceEEEeeCCCeEEEEecCCEEEEEEcCCCeeEEeeccCCCcccCeEECCCCCEEEEeCCC-----
Q 018474 42 GLTKLGE--GCVNHPEDVSVVVSKGALYTATRDGWVKYFILHNETLVNWKHIDSQSLLGLTTTKDGGVILCDNEK----- 114 (355)
Q Consensus 42 ~~~~~~~--~~~~~p~~i~~d~~~g~l~~~~~~g~i~~~~~~~g~~~~~~~~~~~p~~gl~~d~~g~L~v~~~~~----- 114 (355)
+.+++++ |.-..--++.+|.+...+..++.|..+..+|.++|+.....+.+.... .+-++.+|++.++...+
T Consensus 41 nGerlGty~GHtGavW~~Did~~s~~liTGSAD~t~kLWDv~tGk~la~~k~~~~Vk-~~~F~~~gn~~l~~tD~~mg~~ 119 (327)
T KOG0643|consen 41 NGERLGTYDGHTGAVWCCDIDWDSKHLITGSADQTAKLWDVETGKQLATWKTNSPVK-RVDFSFGGNLILASTDKQMGYT 119 (327)
T ss_pred CCceeeeecCCCceEEEEEecCCcceeeeccccceeEEEEcCCCcEEEEeecCCeeE-EEeeccCCcEEEEEehhhcCcc
Confidence 3466654 333334466667666778888889989999999997665444444455 77888888876654321
Q ss_pred c---EEEEc-CC----C---eEEEcCCcCCcccEEEccCCcEEEEeCCCCCCCccccccccccCCCCeEEEEeCCCCeEE
Q 018474 115 G---LLKVT-EE----G---VEAIVPDASFTNDVIAASDGTLYFTVASTKYTPTDFYKDMAEGKPYGQLRKYDPKLKETT 183 (355)
Q Consensus 115 g---l~~~~-~~----g---~~~~~~~~~~~~~l~~d~dG~ly~~d~~~~~~~~~~~~~~~~~~~~g~l~~~dp~~~~~~ 183 (355)
+ ++++- .. + ...+......+.....++-|...++. ...|.+-+||..+|+..
T Consensus 120 ~~v~~fdi~~~~~~~~s~ep~~kI~t~~skit~a~Wg~l~~~ii~G-----------------he~G~is~~da~~g~~~ 182 (327)
T KOG0643|consen 120 CFVSVFDIRDDSSDIDSEEPYLKIPTPDSKITSALWGPLGETIIAG-----------------HEDGSISIYDARTGKEL 182 (327)
T ss_pred eEEEEEEccCChhhhcccCceEEecCCccceeeeeecccCCEEEEe-----------------cCCCcEEEEEcccCcee
Confidence 2 23332 11 1 22233333556666667666544442 23678999999887543
Q ss_pred Eeec--cccccccEEEeCCCCEEEEEeCCCCeEEEEEeC
Q 018474 184 VLHE--GFYFANGIALSKNEDFVVVCESWKFRCRRYWLK 220 (355)
Q Consensus 184 ~~~~--~~~~pngi~~~~dg~~l~v~~~~~~~i~~~~~~ 220 (355)
+-.. .-...|.+++++|.. .+++.+....-..+|..
T Consensus 183 v~s~~~h~~~Ind~q~s~d~T-~FiT~s~Dttakl~D~~ 220 (327)
T KOG0643|consen 183 VDSDEEHSSKINDLQFSRDRT-YFITGSKDTTAKLVDVR 220 (327)
T ss_pred eechhhhccccccccccCCcc-eEEecccCccceeeecc
Confidence 3221 124568899999986 67777665555556653
No 155
>KOG4649 consensus PQQ (pyrrolo-quinoline quinone) repeat protein [Secondary metabolites biosynthesis, transport and catabolism]
Probab=96.87 E-value=0.27 Score=42.89 Aligned_cols=147 Identities=14% Similarity=0.011 Sum_probs=79.7
Q ss_pred CceEEEeeCCCeEEEEecCCEEEEEEcCCCeeEEeeccCCCcccCeEECCCCCEEEEeCCCcEEEEc-CCC--eEEEcCC
Q 018474 54 PEDVSVVVSKGALYTATRDGWVKYFILHNETLVNWKHIDSQSLLGLTTTKDGGVILCDNEKGLLKVT-EEG--VEAIVPD 130 (355)
Q Consensus 54 p~~i~~d~~~g~l~~~~~~g~i~~~~~~~g~~~~~~~~~~~p~~gl~~d~~g~L~v~~~~~gl~~~~-~~g--~~~~~~~ 130 (355)
|--+.-| ....+|+++..+.+..+|+.+|...--...+.+.. +-+.--.+.+.++-..+++|.+. ++| ...+...
T Consensus 15 pLVV~~d-skT~v~igSHs~~~~avd~~sG~~~We~ilg~RiE-~sa~vvgdfVV~GCy~g~lYfl~~~tGs~~w~f~~~ 92 (354)
T KOG4649|consen 15 PLVVCND-SKTLVVIGSHSGIVIAVDPQSGNLIWEAILGVRIE-CSAIVVGDFVVLGCYSGGLYFLCVKTGSQIWNFVIL 92 (354)
T ss_pred cEEEecC-CceEEEEecCCceEEEecCCCCcEEeehhhCceee-eeeEEECCEEEEEEccCcEEEEEecchhheeeeeeh
Confidence 3333444 45678999999999999999997542222234443 33222223355666667788887 566 2211111
Q ss_pred cCCcccEEEccCC-cEEEEeCCCCCCCccccccccccCCCCeEEEEeCCCCeEEE-eeccccccccEEEeCCCCEEEEEe
Q 018474 131 ASFTNDVIAASDG-TLYFTVASTKYTPTDFYKDMAEGKPYGQLRKYDPKLKETTV-LHEGFYFANGIALSKNEDFVVVCE 208 (355)
Q Consensus 131 ~~~~~~l~~d~dG-~ly~~d~~~~~~~~~~~~~~~~~~~~g~l~~~dp~~~~~~~-~~~~~~~pngi~~~~dg~~l~v~~ 208 (355)
...--.-..|.++ -||.+.. ++.+|..|+.+..-.. ..-+...-.+=++.+-...||++.
T Consensus 93 ~~vk~~a~~d~~~glIycgsh------------------d~~~yalD~~~~~cVykskcgG~~f~sP~i~~g~~sly~a~ 154 (354)
T KOG4649|consen 93 ETVKVRAQCDFDGGLIYCGSH------------------DGNFYALDPKTYGCVYKSKCGGGTFVSPVIAPGDGSLYAAI 154 (354)
T ss_pred hhhccceEEcCCCceEEEecC------------------CCcEEEecccccceEEecccCCceeccceecCCCceEEEEe
Confidence 1111123566665 5666543 4567778876543211 111111122235666334599886
Q ss_pred CCCCeEEEEEeCC
Q 018474 209 SWKFRCRRYWLKG 221 (355)
Q Consensus 209 ~~~~~i~~~~~~~ 221 (355)
+ .+++.+.+.+.
T Consensus 155 t-~G~vlavt~~~ 166 (354)
T KOG4649|consen 155 T-AGAVLAVTKNP 166 (354)
T ss_pred c-cceEEEEccCC
Confidence 5 57888887643
No 156
>KOG0265 consensus U5 snRNP-specific protein-like factor and related proteins [RNA processing and modification]
Probab=96.86 E-value=0.3 Score=43.33 Aligned_cols=164 Identities=15% Similarity=0.204 Sum_probs=89.3
Q ss_pred ceEEEeeCCCeEEEEecCCEEEEEEcCCCeeEEeeccC---CCcccCeEECCCCCEEEE-eCCCcEEEEc-CCC--eEEE
Q 018474 55 EDVSVVVSKGALYTATRDGWVKYFILHNETLVNWKHID---SQSLLGLTTTKDGGVILC-DNEKGLLKVT-EEG--VEAI 127 (355)
Q Consensus 55 ~~i~~d~~~g~l~~~~~~g~i~~~~~~~g~~~~~~~~~---~~p~~gl~~d~~g~L~v~-~~~~gl~~~~-~~g--~~~~ 127 (355)
..+.++|++..+..+..|..|+.++. .|.-+.+.... +-+- ++.+.++++..++ ...+.++.+| .+| .+.+
T Consensus 51 ~~~~F~P~gs~~aSgG~Dr~I~LWnv-~gdceN~~~lkgHsgAVM-~l~~~~d~s~i~S~gtDk~v~~wD~~tG~~~rk~ 128 (338)
T KOG0265|consen 51 YTIKFHPDGSCFASGGSDRAIVLWNV-YGDCENFWVLKGHSGAVM-ELHGMRDGSHILSCGTDKTVRGWDAETGKRIRKH 128 (338)
T ss_pred EEEEECCCCCeEeecCCcceEEEEec-cccccceeeeccccceeE-eeeeccCCCEEEEecCCceEEEEecccceeeehh
Confidence 34567764444445667888988876 33333332211 2244 6667788875554 4445677777 577 4434
Q ss_pred cCCcCCcccEEEccCCcEEEEeCCCC-----CCCc------cc--------------cccccccCCCCeEEEEeCCCCeE
Q 018474 128 VPDASFTNDVIAASDGTLYFTVASTK-----YTPT------DF--------------YKDMAEGKPYGQLRKYDPKLKET 182 (355)
Q Consensus 128 ~~~~~~~~~l~~d~dG~ly~~d~~~~-----~~~~------~~--------------~~~~~~~~~~g~l~~~dp~~~~~ 182 (355)
.....++|.+.....|-..++..+.. |..+ .. ...+..+.-.+.+-.||+..++.
T Consensus 129 k~h~~~vNs~~p~rrg~~lv~SgsdD~t~kl~D~R~k~~~~t~~~kyqltAv~f~d~s~qv~sggIdn~ikvWd~r~~d~ 208 (338)
T KOG0265|consen 129 KGHTSFVNSLDPSRRGPQLVCSGSDDGTLKLWDIRKKEAIKTFENKYQLTAVGFKDTSDQVISGGIDNDIKVWDLRKNDG 208 (338)
T ss_pred ccccceeeecCccccCCeEEEecCCCceEEEEeecccchhhccccceeEEEEEecccccceeeccccCceeeeccccCcc
Confidence 33335666655444453333322100 0110 10 11123333344566778765555
Q ss_pred EEeecccc-ccccEEEeCCCCEEEEEeCCCCeEEEEEeCC
Q 018474 183 TVLHEGFY-FANGIALSKNEDFVVVCESWKFRCRRYWLKG 221 (355)
Q Consensus 183 ~~~~~~~~-~pngi~~~~dg~~l~v~~~~~~~i~~~~~~~ 221 (355)
.....+-. .-.++.++++|. ...++...+.+.++++.-
T Consensus 209 ~~~lsGh~DtIt~lsls~~gs-~llsnsMd~tvrvwd~rp 247 (338)
T KOG0265|consen 209 LYTLSGHADTITGLSLSRYGS-FLLSNSMDNTVRVWDVRP 247 (338)
T ss_pred eEEeecccCceeeEEeccCCC-ccccccccceEEEEEecc
Confidence 44443322 246889999998 557778888888888753
No 157
>PHA02713 hypothetical protein; Provisional
Probab=96.70 E-value=0.59 Score=46.56 Aligned_cols=119 Identities=10% Similarity=0.073 Sum_probs=64.2
Q ss_pred EEEEEEcCCCeeEEeeccCCCc--ccCeEECCCCCEEEEeCC-------CcEEEEcC-CC-eEEEcCCc-CCcccEEEcc
Q 018474 74 WVKYFILHNETLVNWKHIDSQS--LLGLTTTKDGGVILCDNE-------KGLLKVTE-EG-VEAIVPDA-SFTNDVIAAS 141 (355)
Q Consensus 74 ~i~~~~~~~g~~~~~~~~~~~p--~~gl~~d~~g~L~v~~~~-------~gl~~~~~-~g-~~~~~~~~-~~~~~l~~d~ 141 (355)
.+.++|+.++++..+....... . +.+. -++.||+.... ..+++|++ ++ .+.++.-. ..-..-+..-
T Consensus 273 ~v~~yd~~~~~W~~l~~mp~~r~~~-~~a~-l~~~IYviGG~~~~~~~~~~v~~Yd~~~n~W~~~~~m~~~R~~~~~~~~ 350 (557)
T PHA02713 273 CILVYNINTMEYSVISTIPNHIINY-ASAI-VDNEIIIAGGYNFNNPSLNKVYKINIENKIHVELPPMIKNRCRFSLAVI 350 (557)
T ss_pred CEEEEeCCCCeEEECCCCCccccce-EEEE-ECCEEEEEcCCCCCCCccceEEEEECCCCeEeeCCCCcchhhceeEEEE
Confidence 4788999898888765432211 2 3333 36789987532 12678884 44 44433321 1111223334
Q ss_pred CCcEEEEeCCCCCCCccccccccccCCCCeEEEEeCCCCeEEEeecccc--ccccEEEeCCCCEEEEEe
Q 018474 142 DGTLYFTVASTKYTPTDFYKDMAEGKPYGQLRKYDPKLKETTVLHEGFY--FANGIALSKNEDFVVVCE 208 (355)
Q Consensus 142 dG~ly~~d~~~~~~~~~~~~~~~~~~~~g~l~~~dp~~~~~~~~~~~~~--~pngi~~~~dg~~l~v~~ 208 (355)
+|.||+..... .......+.+|||.+++++.+..-.. .-.+++ .-+++ +|+..
T Consensus 351 ~g~IYviGG~~------------~~~~~~sve~Ydp~~~~W~~~~~mp~~r~~~~~~-~~~g~-IYviG 405 (557)
T PHA02713 351 DDTIYAIGGQN------------GTNVERTIECYTMGDDKWKMLPDMPIALSSYGMC-VLDQY-IYIIG 405 (557)
T ss_pred CCEEEEECCcC------------CCCCCceEEEEECCCCeEEECCCCCcccccccEE-EECCE-EEEEe
Confidence 78999864320 00112368999999999887543211 111222 23454 88865
No 158
>COG0823 TolB Periplasmic component of the Tol biopolymer transport system [Intracellular trafficking and secretion]
Probab=96.69 E-value=0.47 Score=45.42 Aligned_cols=129 Identities=16% Similarity=0.081 Sum_probs=73.6
Q ss_pred EEEEEEcCCCeeEEeeccCCCcccCeEECCCCC-EEEEeCCC---cEEEEcCC-C-eEEEcCCcCCcc-cEEEccCC-cE
Q 018474 74 WVKYFILHNETLVNWKHIDSQSLLGLTTTKDGG-VILCDNEK---GLLKVTEE-G-VEAIVPDASFTN-DVIAASDG-TL 145 (355)
Q Consensus 74 ~i~~~~~~~g~~~~~~~~~~~p~~gl~~d~~g~-L~v~~~~~---gl~~~~~~-g-~~~~~~~~~~~~-~l~~d~dG-~l 145 (355)
+++..+.++++...+....+.-. ...+.+||+ |.++.... .+|.+|.. + ...+.... .++ +=.+.||| .|
T Consensus 219 ~i~~~~l~~g~~~~i~~~~g~~~-~P~fspDG~~l~f~~~rdg~~~iy~~dl~~~~~~~Lt~~~-gi~~~Ps~spdG~~i 296 (425)
T COG0823 219 RIYYLDLNTGKRPVILNFNGNNG-APAFSPDGSKLAFSSSRDGSPDIYLMDLDGKNLPRLTNGF-GINTSPSWSPDGSKI 296 (425)
T ss_pred eEEEEeccCCccceeeccCCccC-CccCCCCCCEEEEEECCCCCccEEEEcCCCCcceecccCC-ccccCccCCCCCCEE
Confidence 47777777666555443322222 345667776 33333332 37777743 3 44443332 111 33577899 56
Q ss_pred EEEeCCCCCCCccccccccccCCCCeEEEEeCCCCeEEEeeccccccccEEEeCCCCEEEEEeCCCCe--EEEEEe
Q 018474 146 YFTVASTKYTPTDFYKDMAEGKPYGQLRKYDPKLKETTVLHEGFYFANGIALSKNEDFVVVCESWKFR--CRRYWL 219 (355)
Q Consensus 146 y~~d~~~~~~~~~~~~~~~~~~~~g~l~~~dp~~~~~~~~~~~~~~pngi~~~~dg~~l~v~~~~~~~--i~~~~~ 219 (355)
+|+... .+ .-.+|++|+++++.+.+.........-.++|||+.+.+.....+. |..+++
T Consensus 297 vf~Sdr-------------~G--~p~I~~~~~~g~~~~riT~~~~~~~~p~~SpdG~~i~~~~~~~g~~~i~~~~~ 357 (425)
T COG0823 297 VFTSDR-------------GG--RPQIYLYDLEGSQVTRLTFSGGGNSNPVWSPDGDKIVFESSSGGQWDIDKNDL 357 (425)
T ss_pred EEEeCC-------------CC--CcceEEECCCCCceeEeeccCCCCcCccCCCCCCEEEEEeccCCceeeEEecc
Confidence 666433 11 226999999988877665444433345789999988777743333 445554
No 159
>PF06433 Me-amine-dh_H: Methylamine dehydrogenase heavy chain (MADH); InterPro: IPR009451 Methylamine dehydrogenase (1.4.99.3 from EC) is a periplasmic quinoprotein found in several methyltrophic bacteria []. It is induced when grown on methylamine as a carbon source MADH and catalyses the oxidative deamination of amines to their corresponding aldehydes. The redox cofactor of this enzyme is tryptophan tryptophylquinone (TTQ). Electrons derived from the oxidation of methylamine are passed to an electron acceptor, which is usually the blue-copper protein amicyanin (IPR002386 from INTERPRO). RCH2NH2 + H2O + acceptor = RCHO + NH3 + reduced acceptor MADH is a hetero-tetramer, comprised of two heavy subunits and two light subunits. The heavy subunit forms a seven-bladed beta-propeller like structure [].; GO: 0030058 amine dehydrogenase activity, 0030416 methylamine metabolic process, 0055114 oxidation-reduction process, 0042597 periplasmic space; PDB: 3RN1_F 3SVW_F 3PXT_F 3L4O_F 3L4M_D 3SJL_F 3PXS_D 3ORV_F 3RMZ_F 3RLM_F ....
Probab=96.66 E-value=0.2 Score=45.72 Aligned_cols=107 Identities=16% Similarity=0.180 Sum_probs=63.4
Q ss_pred CCeEEEEeCCCCeEEEeeccccccccEEEeCCCCEEEEEeCCCCe---------EEEEEeCCCCCcceeEecccC-----
Q 018474 169 YGQLRKYDPKLKETTVLHEGFYFANGIALSKNEDFVVVCESWKFR---------CRRYWLKGDRAGILDAFIENL----- 234 (355)
Q Consensus 169 ~g~l~~~dp~~~~~~~~~~~~~~pngi~~~~dg~~l~v~~~~~~~---------i~~~~~~~~~~~~~~~~~~~~----- 234 (355)
.++++.+|.+++++.=..+....++ ++++||++.+|++++.-.| |..||.++... ..++.+...
T Consensus 16 ~~rv~viD~d~~k~lGmi~~g~~~~-~~~spdgk~~y~a~T~~sR~~rG~RtDvv~~~D~~TL~~-~~EI~iP~k~R~~~ 93 (342)
T PF06433_consen 16 TSRVYVIDADSGKLLGMIDTGFLGN-VALSPDGKTIYVAETFYSRGTRGERTDVVEIWDTQTLSP-TGEIEIPPKPRAQV 93 (342)
T ss_dssp SEEEEEEETTTTEEEEEEEEESSEE-EEE-TTSSEEEEEEEEEEETTEEEEEEEEEEEETTTTEE-EEEEEETTS-B--B
T ss_pred cceEEEEECCCCcEEEEeecccCCc-eeECCCCCEEEEEEEEEeccccccceeEEEEEecCcCcc-cceEecCCcchhee
Confidence 3589999999998765555555565 7799999999999874222 34455433211 112222111
Q ss_pred CCCcCceEECCCCC-EEEEeecCCchhhHhhhcchhHHHHHHhccchhhcccCCCCCCceEEEEEeCCCCeEEEEEECC
Q 018474 235 PGGPDNINLAPDGS-FWIGLIKMNQTGVRAIQKCREKWELLDAYPGLISLLLPMGSDAGARVVKVDGNDGKIIRDFNDP 312 (355)
Q Consensus 235 ~g~p~~i~~d~~G~-lwv~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~g~~~~~~~~~ 312 (355)
..++..+.+..||+ ++|-... +...|-.+|-+.++....+..|
T Consensus 94 ~~~~~~~~ls~dgk~~~V~N~T-----------------------------------Pa~SVtVVDl~~~kvv~ei~~P 137 (342)
T PF06433_consen 94 VPYKNMFALSADGKFLYVQNFT-----------------------------------PATSVTVVDLAAKKVVGEIDTP 137 (342)
T ss_dssp S--GGGEEE-TTSSEEEEEEES-----------------------------------SSEEEEEEETTTTEEEEEEEGT
T ss_pred cccccceEEccCCcEEEEEccC-----------------------------------CCCeEEEEECCCCceeeeecCC
Confidence 12456677888887 5665543 3356888887567776666554
No 160
>KOG0272 consensus U4/U6 small nuclear ribonucleoprotein Prp4 (contains WD40 repeats) [RNA processing and modification]
Probab=96.65 E-value=0.067 Score=49.36 Aligned_cols=187 Identities=14% Similarity=0.115 Sum_probs=102.8
Q ss_pred CCCCCCceEEEeeCCCeEEEEecCCEEEEEEcCCCeeEEeecc-CCCcccCeEECCCCCEEEEeCCCcEEEEc--CCC--
Q 018474 49 GCVNHPEDVSVVVSKGALYTATRDGWVKYFILHNETLVNWKHI-DSQSLLGLTTTKDGGVILCDNEKGLLKVT--EEG-- 123 (355)
Q Consensus 49 ~~~~~p~~i~~d~~~g~l~~~~~~g~i~~~~~~~g~~~~~~~~-~~~p~~gl~~d~~g~L~v~~~~~gl~~~~--~~g-- 123 (355)
|....-..++++|+|..|-.++.|..=..+|..+++....... ....+ ++++.+||.|..+...+.+-++- .+|
T Consensus 259 gH~~RVs~VafHPsG~~L~TasfD~tWRlWD~~tk~ElL~QEGHs~~v~-~iaf~~DGSL~~tGGlD~~~RvWDlRtgr~ 337 (459)
T KOG0272|consen 259 GHLARVSRVAFHPSGKFLGTASFDSTWRLWDLETKSELLLQEGHSKGVF-SIAFQPDGSLAATGGLDSLGRVWDLRTGRC 337 (459)
T ss_pred cchhhheeeeecCCCceeeecccccchhhcccccchhhHhhcccccccc-eeEecCCCceeeccCccchhheeecccCcE
Confidence 3344455667776666666677766555566655533222111 12366 89999999998876555555654 466
Q ss_pred eEEEcCCcCCcccEEEccCCcEEEEeCCCCCCCccccccccccCCCCeEEEEeCCCCe-EEEeeccccccccEEEeCCCC
Q 018474 124 VEAIVPDASFTNDVIAASDGTLYFTVASTKYTPTDFYKDMAEGKPYGQLRKYDPKLKE-TTVLHEGFYFANGIALSKNED 202 (355)
Q Consensus 124 ~~~~~~~~~~~~~l~~d~dG~ly~~d~~~~~~~~~~~~~~~~~~~~g~l~~~dp~~~~-~~~~~~~~~~pngi~~~~dg~ 202 (355)
+-.+.....-+.++.++|+|....|.+. .+..-.||....+ +..+......-..+.++|+..
T Consensus 338 im~L~gH~k~I~~V~fsPNGy~lATgs~-----------------Dnt~kVWDLR~r~~ly~ipAH~nlVS~Vk~~p~~g 400 (459)
T KOG0272|consen 338 IMFLAGHIKEILSVAFSPNGYHLATGSS-----------------DNTCKVWDLRMRSELYTIPAHSNLVSQVKYSPQEG 400 (459)
T ss_pred EEEecccccceeeEeECCCceEEeecCC-----------------CCcEEEeeecccccceecccccchhhheEecccCC
Confidence 4444555577889999999987777554 2334444543221 111111112234688999666
Q ss_pred EEEEEeCCCCeEEEEEeCCCCCcceeEecccCCCCcCceEECCCCCEEEEeecC
Q 018474 203 FVVVCESWKFRCRRYWLKGDRAGILDAFIENLPGGPDNINLAPDGSFWIGLIKM 256 (355)
Q Consensus 203 ~l~v~~~~~~~i~~~~~~~~~~~~~~~~~~~~~g~p~~i~~d~~G~lwv~~~~~ 256 (355)
..+++.+..+.+..|.-.+- ...+.+. +..+-.-.+.+.++|...++..-.
T Consensus 401 ~fL~TasyD~t~kiWs~~~~--~~~ksLa-GHe~kV~s~Dis~d~~~i~t~s~D 451 (459)
T KOG0272|consen 401 YFLVTASYDNTVKIWSTRTW--SPLKSLA-GHEGKVISLDISPDSQAIATSSFD 451 (459)
T ss_pred eEEEEcccCcceeeecCCCc--ccchhhc-CCccceEEEEeccCCceEEEeccC
Confidence 67777766666655543221 1122222 111112223455777666655443
No 161
>PF14583 Pectate_lyase22: Oligogalacturonate lyase; PDB: 3C5M_C 3PE7_A.
Probab=96.63 E-value=0.16 Score=47.31 Aligned_cols=160 Identities=16% Similarity=0.128 Sum_probs=78.1
Q ss_pred CCeEEEEeCCCCeEEEeeccc-cccccEEEeCCCCEEEEEeCCCCeEEEEEeCCCCCcceeEecccCCCCcCceEECCCC
Q 018474 169 YGQLRKYDPKLKETTVLHEGF-YFANGIALSKNEDFVVVCESWKFRCRRYWLKGDRAGILDAFIENLPGGPDNINLAPDG 247 (355)
Q Consensus 169 ~g~l~~~dp~~~~~~~~~~~~-~~pngi~~~~dg~~l~v~~~~~~~i~~~~~~~~~~~~~~~~~~~~~g~p~~i~~d~~G 247 (355)
...+|.+|.++++.+.+..+. ....|..++++.+.+|+.- ...+|.++++++.+....-.+.+...++ ...+.++++
T Consensus 59 ~~nly~lDL~t~~i~QLTdg~g~~~~g~~~s~~~~~~~Yv~-~~~~l~~vdL~T~e~~~vy~~p~~~~g~-gt~v~n~d~ 136 (386)
T PF14583_consen 59 NRNLYLLDLATGEITQLTDGPGDNTFGGFLSPDDRALYYVK-NGRSLRRVDLDTLEERVVYEVPDDWKGY-GTWVANSDC 136 (386)
T ss_dssp S-EEEEEETTT-EEEE---SS-B-TTT-EE-TTSSEEEEEE-TTTEEEEEETTT--EEEEEE--TTEEEE-EEEEE-TTS
T ss_pred CcceEEEEcccCEEEECccCCCCCccceEEecCCCeEEEEE-CCCeEEEEECCcCcEEEEEECCcccccc-cceeeCCCc
Confidence 447999999999998877653 2344788899999876654 2368999998654322111111111111 223457889
Q ss_pred CEEEEeecCCchhhHhhhcchhHHHHHHhccchhhcccCCCCCCceEEEEEeCCCCeEEEEEECCC--CCc----cc--c
Q 018474 248 SFWIGLIKMNQTGVRAIQKCREKWELLDAYPGLISLLLPMGSDAGARVVKVDGNDGKIIRDFNDPD--ATY----IS--F 319 (355)
Q Consensus 248 ~lwv~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~g~~~~~~~~~~--g~~----~~--~ 319 (355)
+.+++....+. -.+-+......+++... .+..+|+.+|-++|+....+.+.. |.+ .. .
T Consensus 137 t~~~g~e~~~~-d~~~l~~~~~f~e~~~a-------------~p~~~i~~idl~tG~~~~v~~~~~wlgH~~fsP~dp~l 202 (386)
T PF14583_consen 137 TKLVGIEISRE-DWKPLTKWKGFREFYEA-------------RPHCRIFTIDLKTGERKVVFEDTDWLGHVQFSPTDPTL 202 (386)
T ss_dssp SEEEEEEEEGG-G-----SHHHHHHHHHC----------------EEEEEEETTT--EEEEEEESS-EEEEEEETTEEEE
T ss_pred cEEEEEEEeeh-hccCccccHHHHHHHhh-------------CCCceEEEEECCCCceeEEEecCccccCcccCCCCCCE
Confidence 99888754321 11111222333444332 233689999987888777776654 210 00 1
Q ss_pred eeEEEEe-----CCEEEEeecCCCeEEEee
Q 018474 320 VTSAAEF-----DGNLYLASLQSNFIGILP 344 (355)
Q Consensus 320 ~~~~~~~-----~g~L~v~~~~~~~i~~~~ 344 (355)
+..+.|. +.+||+.+..+..+.++.
T Consensus 203 i~fCHEGpw~~Vd~RiW~i~~dg~~~~~v~ 232 (386)
T PF14583_consen 203 IMFCHEGPWDLVDQRIWTINTDGSNVKKVH 232 (386)
T ss_dssp EEEEE-S-TTTSS-SEEEEETTS---EESS
T ss_pred EEEeccCCcceeceEEEEEEcCCCcceeee
Confidence 1122232 137999887777666654
No 162
>PF13449 Phytase-like: Esterase-like activity of phytase
Probab=96.63 E-value=0.12 Score=47.75 Aligned_cols=110 Identities=15% Similarity=0.181 Sum_probs=61.4
Q ss_pred CcccEEEccCCcEEEEeCCCCCCCccccccccccCCCCeEEEEeCCCCeE-EEe-e-cc-------------ccccccEE
Q 018474 133 FTNDVIAASDGTLYFTVASTKYTPTDFYKDMAEGKPYGQLRKYDPKLKET-TVL-H-EG-------------FYFANGIA 196 (355)
Q Consensus 133 ~~~~l~~d~dG~ly~~d~~~~~~~~~~~~~~~~~~~~g~l~~~dp~~~~~-~~~-~-~~-------------~~~pngi~ 196 (355)
.+.+|++.++|.+|+++..... ....-.|++|+++ |++ +.+ . .. -....+++
T Consensus 86 D~Egi~~~~~g~~~is~E~~~~-----------~~~~p~I~~~~~~-G~~~~~~~vP~~~~~~~~~~~~~~~N~G~E~la 153 (326)
T PF13449_consen 86 DPEGIAVPPDGSFWISSEGGRT-----------GGIPPRIRRFDLD-GRVIRRFPVPAAFLPDANGTSGRRNNRGFEGLA 153 (326)
T ss_pred ChhHeEEecCCCEEEEeCCccC-----------CCCCCEEEEECCC-CcccceEccccccccccCccccccCCCCeEEEE
Confidence 5668999889999999865200 0012478888876 443 222 1 11 12245799
Q ss_pred EeCCCCEEEEEeCCC---------------CeEEEEEeCCCC--CcceeEecccC-----CCCcCceEECCCCCEEEEee
Q 018474 197 LSKNEDFVVVCESWK---------------FRCRRYWLKGDR--AGILDAFIENL-----PGGPDNINLAPDGSFWIGLI 254 (355)
Q Consensus 197 ~~~dg~~l~v~~~~~---------------~~i~~~~~~~~~--~~~~~~~~~~~-----~g~p~~i~~d~~G~lwv~~~ 254 (355)
+++||+.||.+.... -+|++|++.... ..++..-.+.. ..-+..+...++|+++|=--
T Consensus 154 ~~~dG~~l~~~~E~~l~~d~~~~~~~~~~~~ri~~~d~~~~~~~~~~~~y~ld~~~~~~~~~~isd~~al~d~~lLvLER 233 (326)
T PF13449_consen 154 VSPDGRTLFAAMESPLKQDGPRANPDNGSPLRILRYDPKTPGEPVAEYAYPLDPPPTAPGDNGISDIAALPDGRLLVLER 233 (326)
T ss_pred ECCCCCEEEEEECccccCCCcccccccCceEEEEEecCCCCCccceEEEEeCCccccccCCCCceeEEEECCCcEEEEEc
Confidence 999999777765432 367778775321 22222112210 11133455556788877553
No 163
>PF02333 Phytase: Phytase; InterPro: IPR003431 Phytase (3.1.3.8 from EC) (phytate 3-phosphatase) is a secreted enzyme which hydrolyses phytate to release inorganic phosphate. This family appears to represent a novel enzyme that shows phytase activity () and has been shown to consist of a single structural unit with a six-bladed propeller folding architecture ().; GO: 0016158 3-phytase activity; PDB: 3AMS_A 3AMR_A 1QLG_A 2POO_A 1H6L_A 1CVM_A 1POO_A.
Probab=96.61 E-value=0.54 Score=43.94 Aligned_cols=138 Identities=14% Similarity=0.188 Sum_probs=71.1
Q ss_pred CCeEEEE-ecCCEEEEEEcCCCeeEEeeccCCCcc-----cCeEECCCCC---EEEEeCC----C--cEEEEcC-CC-eE
Q 018474 63 KGALYTA-TRDGWVKYFILHNETLVNWKHIDSQSL-----LGLTTTKDGG---VILCDNE----K--GLLKVTE-EG-VE 125 (355)
Q Consensus 63 ~g~l~~~-~~~g~i~~~~~~~g~~~~~~~~~~~p~-----~gl~~d~~g~---L~v~~~~----~--gl~~~~~-~g-~~ 125 (355)
...++++ ...++++.||. +|+..+.... ++++ .++.+ .|+ |.+++.. + .+|++++ +| ++
T Consensus 67 ~kSlIigTdK~~GL~VYdL-~Gk~lq~~~~-Gr~NNVDvrygf~l--~g~~vDlavas~R~~g~n~l~~f~id~~~g~L~ 142 (381)
T PF02333_consen 67 AKSLIIGTDKKGGLYVYDL-DGKELQSLPV-GRPNNVDVRYGFPL--NGKTVDLAVASDRSDGRNSLRLFRIDPDTGELT 142 (381)
T ss_dssp GG-EEEEEETTTEEEEEET-TS-EEEEE-S-S-EEEEEEEEEEEE--TTEEEEEEEEEE-CCCT-EEEEEEEETTTTEEE
T ss_pred ccceEEEEeCCCCEEEEcC-CCcEEEeecC-CCcceeeeecceec--CCceEEEEEEecCcCCCCeEEEEEecCCCCcce
Confidence 3445554 45788999999 5554443322 3332 03333 232 4454432 1 2777775 66 76
Q ss_pred EEcCC-------cCCcccEEE--cc-CCcEEEEeCCCCCCCccccccccccCCCCeEE--EE-eCCCCeEE--Ee--ecc
Q 018474 126 AIVPD-------ASFTNDVIA--AS-DGTLYFTVASTKYTPTDFYKDMAEGKPYGQLR--KY-DPKLKETT--VL--HEG 188 (355)
Q Consensus 126 ~~~~~-------~~~~~~l~~--d~-dG~ly~~d~~~~~~~~~~~~~~~~~~~~g~l~--~~-dp~~~~~~--~~--~~~ 188 (355)
.+... ...+.++|. ++ +|.+|+--.. ..|.+. ++ +...+.++ .+ ...
T Consensus 143 ~v~~~~~p~~~~~~e~yGlcly~~~~~g~~ya~v~~----------------k~G~~~Qy~L~~~~~g~v~~~lVR~f~~ 206 (381)
T PF02333_consen 143 DVTDPAAPIATDLSEPYGLCLYRSPSTGALYAFVNG----------------KDGRVEQYELTDDGDGKVSATLVREFKV 206 (381)
T ss_dssp E-CBTTC-EE-SSSSEEEEEEEE-TTT--EEEEEEE----------------TTSEEEEEEEEE-TTSSEEEEEEEEEE-
T ss_pred EcCCCCcccccccccceeeEEeecCCCCcEEEEEec----------------CCceEEEEEEEeCCCCcEeeEEEEEecC
Confidence 65432 145677775 33 5677754321 123332 22 22333321 11 223
Q ss_pred ccccccEEEeCCCCEEEEEeCCCCeEEEEEeCC
Q 018474 189 FYFANGIALSKNEDFVVVCESWKFRCRRYWLKG 221 (355)
Q Consensus 189 ~~~pngi~~~~dg~~l~v~~~~~~~i~~~~~~~ 221 (355)
...+.|++.+.....||++|.. .+||+|..+.
T Consensus 207 ~sQ~EGCVVDDe~g~LYvgEE~-~GIW~y~Aep 238 (381)
T PF02333_consen 207 GSQPEGCVVDDETGRLYVGEED-VGIWRYDAEP 238 (381)
T ss_dssp SS-EEEEEEETTTTEEEEEETT-TEEEEEESSC
T ss_pred CCcceEEEEecccCCEEEecCc-cEEEEEecCC
Confidence 3568899999988899999975 6999999764
No 164
>PF08662 eIF2A: Eukaryotic translation initiation factor eIF2A; InterPro: IPR013979 This entry contains beta propellor domains found in eukaryotic translation initiation factors and TolB domain-containing proteins.
Probab=96.60 E-value=0.37 Score=40.84 Aligned_cols=128 Identities=18% Similarity=0.150 Sum_probs=74.6
Q ss_pred CCCCEEEEeCCCcEEEEcC-CC-eEEEcCC-cCCcccEEEccCCc-EEEEeCCCCCCCccccccccccCCCCeEEEEeCC
Q 018474 103 KDGGVILCDNEKGLLKVTE-EG-VEAIVPD-ASFTNDVIAASDGT-LYFTVASTKYTPTDFYKDMAEGKPYGQLRKYDPK 178 (355)
Q Consensus 103 ~~g~L~v~~~~~gl~~~~~-~g-~~~~~~~-~~~~~~l~~d~dG~-ly~~d~~~~~~~~~~~~~~~~~~~~g~l~~~dp~ 178 (355)
..+.-|.+. ..|++++. +. ...+... ...+.+++.+|+|+ +.+.... ....+..||.+
T Consensus 30 ~~~ks~~~~--~~l~~~~~~~~~~~~i~l~~~~~I~~~~WsP~g~~favi~g~----------------~~~~v~lyd~~ 91 (194)
T PF08662_consen 30 KSGKSYYGE--FELFYLNEKNIPVESIELKKEGPIHDVAWSPNGNEFAVIYGS----------------MPAKVTLYDVK 91 (194)
T ss_pred cCcceEEee--EEEEEEecCCCccceeeccCCCceEEEEECcCCCEEEEEEcc----------------CCcccEEEcCc
Confidence 444444433 25777763 33 4443222 13489999999985 4444221 12256677776
Q ss_pred CCeEEEeeccccccccEEEeCCCCEEEEEeCC--CCeEEEEEeCCCCCcceeEecccCCCCcCceEECCCCCEEEEeec
Q 018474 179 LKETTVLHEGFYFANGIALSKNEDFVVVCESW--KFRCRRYWLKGDRAGILDAFIENLPGGPDNINLAPDGSFWIGLIK 255 (355)
Q Consensus 179 ~~~~~~~~~~~~~pngi~~~~dg~~l~v~~~~--~~~i~~~~~~~~~~~~~~~~~~~~~g~p~~i~~d~~G~lwv~~~~ 255 (355)
...+..+. -...|.+.++|+|+.+.++..+ .+.|..|+.+. .+.+..........+..+++|++.++...
T Consensus 92 ~~~i~~~~--~~~~n~i~wsP~G~~l~~~g~~n~~G~l~~wd~~~-----~~~i~~~~~~~~t~~~WsPdGr~~~ta~t 163 (194)
T PF08662_consen 92 GKKIFSFG--TQPRNTISWSPDGRFLVLAGFGNLNGDLEFWDVRK-----KKKISTFEHSDATDVEWSPDGRYLATATT 163 (194)
T ss_pred ccEeEeec--CCCceEEEECCCCCEEEEEEccCCCcEEEEEECCC-----CEEeeccccCcEEEEEEcCCCCEEEEEEe
Confidence 44444332 2346789999999988887644 34678888752 11121111122456788999998887654
No 165
>COG3204 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=96.59 E-value=0.49 Score=42.14 Aligned_cols=195 Identities=16% Similarity=0.133 Sum_probs=109.4
Q ss_pred CcccCeEECCCCC-EEEEeCC-CcEEEEcCCC--eEEEcCC-cCCcccEEEccCCcEEEEeCCCCCCCccccccccccCC
Q 018474 94 QSLLGLTTTKDGG-VILCDNE-KGLLKVTEEG--VEAIVPD-ASFTNDVIAASDGTLYFTVASTKYTPTDFYKDMAEGKP 168 (355)
Q Consensus 94 ~p~~gl~~d~~g~-L~v~~~~-~gl~~~~~~g--~~~~~~~-~~~~~~l~~d~dG~ly~~d~~~~~~~~~~~~~~~~~~~ 168 (355)
... ++.++++.+ ||..... -.++.++++| +.+++-. ...|..+..-.+|++-+++.. ..
T Consensus 87 nvS-~LTynp~~rtLFav~n~p~~iVElt~~GdlirtiPL~g~~DpE~Ieyig~n~fvi~dER---------------~~ 150 (316)
T COG3204 87 NVS-SLTYNPDTRTLFAVTNKPAAIVELTKEGDLIRTIPLTGFSDPETIEYIGGNQFVIVDER---------------DR 150 (316)
T ss_pred ccc-ceeeCCCcceEEEecCCCceEEEEecCCceEEEecccccCChhHeEEecCCEEEEEehh---------------cc
Confidence 355 899998776 5555433 3488888888 6666543 367777877777777777654 11
Q ss_pred CCeEEEEeCCCCeEEEee---------ccccccccEEEeCCCCEEEEEeCC-CCeEEEEEeCCCCCcce---------eE
Q 018474 169 YGQLRKYDPKLKETTVLH---------EGFYFANGIALSKNEDFVVVCESW-KFRCRRYWLKGDRAGIL---------DA 229 (355)
Q Consensus 169 ~g~l~~~dp~~~~~~~~~---------~~~~~pngi~~~~dg~~l~v~~~~-~~~i~~~~~~~~~~~~~---------~~ 229 (355)
.-.++++|+++.....-. ..-..-.|+|.+++.+.+|++-.. --+|+.++.......-. +.
T Consensus 151 ~l~~~~vd~~t~~~~~~~~~i~L~~~~k~N~GfEGlA~d~~~~~l~~aKEr~P~~I~~~~~~~~~l~~~~~~~~~~~~~~ 230 (316)
T COG3204 151 ALYLFTVDADTTVISAKVQKIPLGTTNKKNKGFEGLAWDPVDHRLFVAKERNPIGIFEVTQSPSSLSVHASLDPTADRDL 230 (316)
T ss_pred eEEEEEEcCCccEEeccceEEeccccCCCCcCceeeecCCCCceEEEEEccCCcEEEEEecCCcccccccccCcccccce
Confidence 223445566544322110 012234689999999988888643 33455444211111000 01
Q ss_pred ecccCCCCcCceEECC-CCCEEEEeecCCchhhHhhhcchhHHHHHHhccchhhcccCCCCCCceEEEEEeCCCCeEEEE
Q 018474 230 FIENLPGGPDNINLAP-DGSFWIGLIKMNQTGVRAIQKCREKWELLDAYPGLISLLLPMGSDAGARVVKVDGNDGKIIRD 308 (355)
Q Consensus 230 ~~~~~~g~p~~i~~d~-~G~lwv~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~g~~~~~ 308 (355)
|... -.++.+|+ .|+++|=... ...++++|. +|+.+..
T Consensus 231 f~~D----vSgl~~~~~~~~LLVLS~E------------------------------------Sr~l~Evd~-~G~~~~~ 269 (316)
T COG3204 231 FVLD----VSGLEFNAITNSLLVLSDE------------------------------------SRRLLEVDL-SGEVIEL 269 (316)
T ss_pred Eeec----cccceecCCCCcEEEEecC------------------------------------CceEEEEec-CCCeeee
Confidence 1111 13345553 3456665443 247999999 9987666
Q ss_pred EECCCC---C--cccceeEEEEe-CCEEEEeecCCCeEEEeeCC
Q 018474 309 FNDPDA---T--YISFVTSAAEF-DGNLYLASLQSNFIGILPLD 346 (355)
Q Consensus 309 ~~~~~g---~--~~~~~~~~~~~-~g~L~v~~~~~~~i~~~~~~ 346 (355)
.....| + ..+..-+++.+ +|.|||.+= .|..+|+--.
T Consensus 270 lsL~~g~~gL~~dipqaEGiamDd~g~lYIvSE-Pnlfy~F~~~ 312 (316)
T COG3204 270 LSLTKGNHGLSSDIPQAEGIAMDDDGNLYIVSE-PNLFYRFTPQ 312 (316)
T ss_pred EEeccCCCCCcccCCCcceeEECCCCCEEEEec-CCcceecccC
Confidence 544333 2 22344466654 599999885 6666666443
No 166
>KOG4441 consensus Proteins containing BTB/POZ and Kelch domains, involved in regulatory/signal transduction processes [Signal transduction mechanisms; General function prediction only]
Probab=96.55 E-value=0.36 Score=48.12 Aligned_cols=179 Identities=16% Similarity=0.168 Sum_probs=95.6
Q ss_pred ceEEEeeCCCeEEEE-ecC------CEEEEEEcCCCeeEEeeccCC-C-cccCeEECCCCCEEEEeCCCc------EEEE
Q 018474 55 EDVSVVVSKGALYTA-TRD------GWVKYFILHNETLVNWKHIDS-Q-SLLGLTTTKDGGVILCDNEKG------LLKV 119 (355)
Q Consensus 55 ~~i~~d~~~g~l~~~-~~~------g~i~~~~~~~g~~~~~~~~~~-~-p~~gl~~d~~g~L~v~~~~~g------l~~~ 119 (355)
.+++.- ++.+|+. ..+ ..+.++|+.+++|...+.... + -. +++. -+|.||+.....| +-+|
T Consensus 326 ~~~~~~--~~~lYv~GG~~~~~~~l~~ve~YD~~~~~W~~~a~M~~~R~~~-~v~~-l~g~iYavGG~dg~~~l~svE~Y 401 (571)
T KOG4441|consen 326 VGVAVL--NGKLYVVGGYDSGSDRLSSVERYDPRTNQWTPVAPMNTKRSDF-GVAV-LDGKLYAVGGFDGEKSLNSVECY 401 (571)
T ss_pred ccEEEE--CCEEEEEccccCCCcccceEEEecCCCCceeccCCccCccccc-eeEE-ECCEEEEEeccccccccccEEEe
Confidence 444554 6678863 334 356899998888877644322 1 22 4443 3788998654332 6677
Q ss_pred cC-CC-eEEEcCCcCCcccEE-EccCCcEEEEeCCCCCCCccccccccccCCCCeEEEEeCCCCeEEEeecccc--cccc
Q 018474 120 TE-EG-VEAIVPDASFTNDVI-AASDGTLYFTVASTKYTPTDFYKDMAEGKPYGQLRKYDPKLKETTVLHEGFY--FANG 194 (355)
Q Consensus 120 ~~-~g-~~~~~~~~~~~~~l~-~d~dG~ly~~d~~~~~~~~~~~~~~~~~~~~g~l~~~dp~~~~~~~~~~~~~--~png 194 (355)
|+ +. .+..+.....-.+.. ..-+|.||+....... ......+.+|||.+++++...+-.. .-.|
T Consensus 402 Dp~~~~W~~va~m~~~r~~~gv~~~~g~iYi~GG~~~~-----------~~~l~sve~YDP~t~~W~~~~~M~~~R~~~g 470 (571)
T KOG4441|consen 402 DPVTNKWTPVAPMLTRRSGHGVAVLGGKLYIIGGGDGS-----------SNCLNSVECYDPETNTWTLIAPMNTRRSGFG 470 (571)
T ss_pred cCCCCcccccCCCCcceeeeEEEEECCEEEEEcCcCCC-----------ccccceEEEEcCCCCceeecCCcccccccce
Confidence 75 33 444443222122222 3347899987543100 0023478999999999987754322 2234
Q ss_pred EEEeCCCCEEEEEeCCC-----CeEEEEEeCCCCCcceeEecccC-CCCcCceEECCCCCEEEEee
Q 018474 195 IALSKNEDFVVVCESWK-----FRCRRYWLKGDRAGILDAFIENL-PGGPDNINLAPDGSFWIGLI 254 (355)
Q Consensus 195 i~~~~dg~~l~v~~~~~-----~~i~~~~~~~~~~~~~~~~~~~~-~g~p~~i~~d~~G~lwv~~~ 254 (355)
++.. ++ .+|+..-.. ..+.+|++.. .+........ +...-+++.. +|.+|+.-.
T Consensus 471 ~a~~-~~-~iYvvGG~~~~~~~~~VE~ydp~~---~~W~~v~~m~~~rs~~g~~~~-~~~ly~vGG 530 (571)
T KOG4441|consen 471 VAVL-NG-KIYVVGGFDGTSALSSVERYDPET---NQWTMVAPMTSPRSAVGVVVL-GGKLYAVGG 530 (571)
T ss_pred EEEE-CC-EEEEECCccCCCccceEEEEcCCC---CceeEcccCccccccccEEEE-CCEEEEEec
Confidence 4443 33 588876432 2377788743 3333332111 1112234443 456776554
No 167
>COG3211 PhoX Predicted phosphatase [General function prediction only]
Probab=96.54 E-value=0.027 Score=54.14 Aligned_cols=114 Identities=21% Similarity=0.189 Sum_probs=71.3
Q ss_pred ccccEEEeCCCCEEEEEeCCCC----------------eEEEEEeCCC----CCcceeEeccc-CC---C----------
Q 018474 191 FANGIALSKNEDFVVVCESWKF----------------RCRRYWLKGD----RAGILDAFIEN-LP---G---------- 236 (355)
Q Consensus 191 ~pngi~~~~dg~~l~v~~~~~~----------------~i~~~~~~~~----~~~~~~~~~~~-~~---g---------- 236 (355)
.|.+|++.|....+|++-|..+ .|+||-..+. ...+.+.|+.. .+ .
T Consensus 418 RpE~i~~~p~~g~Vy~~lTNn~~r~~~~aNpr~~n~~G~I~r~~p~~~d~t~~~ftWdlF~~aG~~~~~~~~~~~~~~~~ 497 (616)
T COG3211 418 RPEWIAVNPGTGEVYFTLTNNGKRSDDAANPRAKNGYGQIVRWIPATGDHTDTKFTWDLFVEAGNPSVLEGGASANINAN 497 (616)
T ss_pred CccceeecCCcceEEEEeCCCCccccccCCCcccccccceEEEecCCCCccCccceeeeeeecCCccccccccccCcccc
Confidence 4678999998888999987644 5788876442 12345555531 11 1
Q ss_pred ---CcCceEECCCCCEEEEeecCCchhhHhhhcchhHHHHHHhccchhhcccCCCCCCceEEEEE---eCCCCeEEEEEE
Q 018474 237 ---GPDNINLAPDGSFWIGLIKMNQTGVRAIQKCREKWELLDAYPGLISLLLPMGSDAGARVVKV---DGNDGKIIRDFN 310 (355)
Q Consensus 237 ---~p~~i~~d~~G~lwv~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~---~~~~g~~~~~~~ 310 (355)
.|||+.+|+.|+|||.+-+..+..-.+ ..|+..+ +++.|++.+.++
T Consensus 498 ~f~~PDnl~fD~~GrLWi~TDg~~s~~~~~----------------------------~~G~~~m~~~~p~~g~~~rf~t 549 (616)
T COG3211 498 WFNSPDNLAFDPWGRLWIQTDGSGSTLRNR----------------------------FRGVTQMLTPDPKTGTIKRFLT 549 (616)
T ss_pred cccCCCceEECCCCCEEEEecCCCCccCcc----------------------------cccccccccCCCccceeeeecc
Confidence 299999999999999997743221110 1123323 555667777777
Q ss_pred CCCCCcccceeEEEEe--CCEEEEeec
Q 018474 311 DPDATYISFVTSAAEF--DGNLYLASL 335 (355)
Q Consensus 311 ~~~g~~~~~~~~~~~~--~g~L~v~~~ 335 (355)
.|.|. .+++.++. +..|||+-.
T Consensus 550 ~P~g~---E~tG~~FspD~~TlFV~vQ 573 (616)
T COG3211 550 GPIGC---EFTGPCFSPDGKTLFVNVQ 573 (616)
T ss_pred CCCcc---eeecceeCCCCceEEEEec
Confidence 77764 45566654 356777643
No 168
>KOG0296 consensus Angio-associated migratory cell protein (contains WD40 repeats) [Function unknown]
Probab=96.54 E-value=0.6 Score=42.54 Aligned_cols=235 Identities=14% Similarity=0.092 Sum_probs=121.3
Q ss_pred CCCCCceEEEeeCCCeEEEEecCCEEEEEEcCCCeeEEeeccCCCcccCeEECCCCCEEEEeCCCcEE-EEc-CCC--eE
Q 018474 50 CVNHPEDVSVVVSKGALYTATRDGWVKYFILHNETLVNWKHIDSQSLLGLTTTKDGGVILCDNEKGLL-KVT-EEG--VE 125 (355)
Q Consensus 50 ~~~~p~~i~~d~~~g~l~~~~~~g~i~~~~~~~g~~~~~~~~~~~p~~gl~~d~~g~L~v~~~~~gl~-~~~-~~g--~~ 125 (355)
....-+.+.++|....|..|+.+|.++.+...++...+.....+.+.+.=.+-++|...++....|.+ ..+ ++| ..
T Consensus 147 e~~dieWl~WHp~a~illAG~~DGsvWmw~ip~~~~~kv~~Gh~~~ct~G~f~pdGKr~~tgy~dgti~~Wn~ktg~p~~ 226 (399)
T KOG0296|consen 147 EVEDIEWLKWHPRAHILLAGSTDGSVWMWQIPSQALCKVMSGHNSPCTCGEFIPDGKRILTGYDDGTIIVWNPKTGQPLH 226 (399)
T ss_pred ccCceEEEEecccccEEEeecCCCcEEEEECCCcceeeEecCCCCCcccccccCCCceEEEEecCceEEEEecCCCceeE
Confidence 45778899999878888889999999999876644433333323332122344677655544445644 445 477 44
Q ss_pred EEcCCc-CCcccEEEcc----------CCcEEEEeCCCCCCCccccccccccCCCCeEE-EEeCCCCeEEEeeccc-ccc
Q 018474 126 AIVPDA-SFTNDVIAAS----------DGTLYFTVASTKYTPTDFYKDMAEGKPYGQLR-KYDPKLKETTVLHEGF-YFA 192 (355)
Q Consensus 126 ~~~~~~-~~~~~l~~d~----------dG~ly~~d~~~~~~~~~~~~~~~~~~~~g~l~-~~dp~~~~~~~~~~~~-~~p 192 (355)
.+.... .....+.+.. ++.+++.+.. .|.+. +.++..-....-.+.. ..-
T Consensus 227 ~~~~~e~~~~~~~~~~~~~~~~~~g~~e~~~~~~~~~-----------------sgKVv~~~n~~~~~l~~~~e~~~esv 289 (399)
T KOG0296|consen 227 KITQAEGLELPCISLNLAGSTLTKGNSEGVACGVNNG-----------------SGKVVNCNNGTVPELKPSQEELDESV 289 (399)
T ss_pred EecccccCcCCccccccccceeEeccCCccEEEEccc-----------------cceEEEecCCCCccccccchhhhhhh
Confidence 443111 1111222222 3344443322 23332 2232111111000000 001
Q ss_pred ccEEEeCCCCEEEEEeCCCCeEEEEEeCCCCCcceeEecccCCCCcCceEECCCCCEEEEeecCCchhhHhhhcchhHHH
Q 018474 193 NGIALSKNEDFVVVCESWKFRCRRYWLKGDRAGILDAFIENLPGGPDNINLAPDGSFWIGLIKMNQTGVRAIQKCREKWE 272 (355)
Q Consensus 193 ngi~~~~dg~~l~v~~~~~~~i~~~~~~~~~~~~~~~~~~~~~g~p~~i~~d~~G~lwv~~~~~~~~~~~~~~~~~~~~~ 272 (355)
..+.++.+=. |..+....++|..||.... +.+...+...+ ...+...+.-.++.++..
T Consensus 290 e~~~~ss~lp-L~A~G~vdG~i~iyD~a~~---~~R~~c~he~~-V~~l~w~~t~~l~t~c~~----------------- 347 (399)
T KOG0296|consen 290 ESIPSSSKLP-LAACGSVDGTIAIYDLAAS---TLRHICEHEDG-VTKLKWLNTDYLLTACAN----------------- 347 (399)
T ss_pred hhcccccccc-hhhcccccceEEEEecccc---hhheeccCCCc-eEEEEEcCcchheeeccC-----------------
Confidence 1122333322 5566666788888987532 22323322111 112334444445655544
Q ss_pred HHHhccchhhcccCCCCCCceEEEEEeCCCCeEEEEEECCCCCcccceeEEEEeCCEEEEeecCCCeEEEeeCC
Q 018474 273 LLDAYPGLISLLLPMGSDAGARVVKVDGNDGKIIRDFNDPDATYISFVTSAAEFDGNLYLASLQSNFIGILPLD 346 (355)
Q Consensus 273 ~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~g~~~~~~~~~~g~~~~~~~~~~~~~g~L~v~~~~~~~i~~~~~~ 346 (355)
+-|..+|.-.|+....|+.+.-. ....++..++++.++....+...+|+.+
T Consensus 348 --------------------g~v~~wDaRtG~l~~~y~GH~~~---Il~f~ls~~~~~vvT~s~D~~a~VF~v~ 398 (399)
T KOG0296|consen 348 --------------------GKVRQWDARTGQLKFTYTGHQMG---ILDFALSPQKRLVVTVSDDNTALVFEVP 398 (399)
T ss_pred --------------------ceEEeeeccccceEEEEecCchh---eeEEEEcCCCcEEEEecCCCeEEEEecC
Confidence 45788887689988899876532 2223344568888888878887777754
No 169
>KOG0286 consensus G-protein beta subunit [General function prediction only]
Probab=96.50 E-value=0.55 Score=41.63 Aligned_cols=186 Identities=12% Similarity=0.147 Sum_probs=107.5
Q ss_pred EecCCCCCCCceEEEeeCCCeEEEEecCCEEEEEEcCCCeeEE-eeccCCCcccCeEECCCCCEEEEeCCCc---EEEEc
Q 018474 45 KLGEGCVNHPEDVSVVVSKGALYTATRDGWVKYFILHNETLVN-WKHIDSQSLLGLTTTKDGGVILCDNEKG---LLKVT 120 (355)
Q Consensus 45 ~~~~~~~~~p~~i~~d~~~g~l~~~~~~g~i~~~~~~~g~~~~-~~~~~~~p~~gl~~d~~g~L~v~~~~~g---l~~~~ 120 (355)
++.-|....--++-+.++.+++..++.||++..+|.-+..-.+ +.......- .-++.|.|++..+...+. +|.+.
T Consensus 49 r~LkGH~~Ki~~~~ws~Dsr~ivSaSqDGklIvWDs~TtnK~haipl~s~WVM-tCA~sPSg~~VAcGGLdN~Csiy~ls 127 (343)
T KOG0286|consen 49 RTLKGHLNKIYAMDWSTDSRRIVSASQDGKLIVWDSFTTNKVHAIPLPSSWVM-TCAYSPSGNFVACGGLDNKCSIYPLS 127 (343)
T ss_pred EEecccccceeeeEecCCcCeEEeeccCCeEEEEEcccccceeEEecCceeEE-EEEECCCCCeEEecCcCceeEEEecc
Confidence 5556777777888898777888889999999999975543222 222222333 567788998877654332 55554
Q ss_pred -C--CC-e---EEEcCCcCCcccEEEccCCcEEEEeCCCCCCCccccccccccCCCCeEEEEeCCCCeEEEeecc-cccc
Q 018474 121 -E--EG-V---EAIVPDASFTNDVIAASDGTLYFTVASTKYTPTDFYKDMAEGKPYGQLRKYDPKLKETTVLHEG-FYFA 192 (355)
Q Consensus 121 -~--~g-~---~~~~~~~~~~~~l~~d~dG~ly~~d~~~~~~~~~~~~~~~~~~~~g~l~~~dp~~~~~~~~~~~-~~~p 192 (355)
+ +| + +.+.....+....-+-+|+.|.-+ ++ ...-..||-++++......+ ..--
T Consensus 128 ~~d~~g~~~v~r~l~gHtgylScC~f~dD~~ilT~-SG-----------------D~TCalWDie~g~~~~~f~GH~gDV 189 (343)
T KOG0286|consen 128 TRDAEGNVRVSRELAGHTGYLSCCRFLDDNHILTG-SG-----------------DMTCALWDIETGQQTQVFHGHTGDV 189 (343)
T ss_pred cccccccceeeeeecCccceeEEEEEcCCCceEec-CC-----------------CceEEEEEcccceEEEEecCCcccE
Confidence 3 44 2 223333355666655556655432 22 23455677767755443333 2223
Q ss_pred ccEEEeC-CCCEEEEEeCCCCeEEEEEeCCCCCcceeEecccCCCCcCceEECCCCCEEEEe
Q 018474 193 NGIALSK-NEDFVVVCESWKFRCRRYWLKGDRAGILDAFIENLPGGPDNINLAPDGSFWIGL 253 (355)
Q Consensus 193 ngi~~~~-dg~~l~v~~~~~~~i~~~~~~~~~~~~~~~~~~~~~g~p~~i~~d~~G~lwv~~ 253 (355)
-++.++| +++ .|++..-...-..+|+... .-.+.|.. ..+-.+.+.+=++|.=+++.
T Consensus 190 ~slsl~p~~~n-tFvSg~cD~~aklWD~R~~--~c~qtF~g-hesDINsv~ffP~G~afatG 247 (343)
T KOG0286|consen 190 MSLSLSPSDGN-TFVSGGCDKSAKLWDVRSG--QCVQTFEG-HESDINSVRFFPSGDAFATG 247 (343)
T ss_pred EEEecCCCCCC-eEEecccccceeeeeccCc--ceeEeecc-cccccceEEEccCCCeeeec
Confidence 4577888 777 7777765555666776433 23444542 22223445666777544443
No 170
>KOG0319 consensus WD40-repeat-containing subunit of the 18S rRNA processing complex [RNA processing and modification]
Probab=96.42 E-value=0.16 Score=50.20 Aligned_cols=151 Identities=13% Similarity=0.164 Sum_probs=92.7
Q ss_pred CCCceEEEeeCCCeEEEEecCCEEEEEEcCCCeeEEeecc--CCCcccCeEECCCCCEEEEeCCCcEEEEc--CCC--eE
Q 018474 52 NHPEDVSVVVSKGALYTATRDGWVKYFILHNETLVNWKHI--DSQSLLGLTTTKDGGVILCDNEKGLLKVT--EEG--VE 125 (355)
Q Consensus 52 ~~p~~i~~d~~~g~l~~~~~~g~i~~~~~~~g~~~~~~~~--~~~p~~gl~~d~~g~L~v~~~~~gl~~~~--~~g--~~ 125 (355)
..-.++++.+++..|+.+...+-+..++..+|+..+.... ..... .|++|+.|.|.......+.+++- ..+ .+
T Consensus 63 d~ita~~l~~d~~~L~~a~rs~llrv~~L~tgk~irswKa~He~Pvi-~ma~~~~g~LlAtggaD~~v~VWdi~~~~~th 141 (775)
T KOG0319|consen 63 DEITALALTPDEEVLVTASRSQLLRVWSLPTGKLIRSWKAIHEAPVI-TMAFDPTGTLLATGGADGRVKVWDIKNGYCTH 141 (775)
T ss_pred hhhheeeecCCccEEEEeeccceEEEEEcccchHhHhHhhccCCCeE-EEEEcCCCceEEeccccceEEEEEeeCCEEEE
Confidence 4456778887788888888888777888888865433222 23345 79999998665544445666654 355 55
Q ss_pred EEcCCcCCcccEEEccCCcEEEEeCCCCCCCccccccccccCCCCeEEEEeCCCCeE--EEeeccccccccEEEeCCCCE
Q 018474 126 AIVPDASFTNDVIAASDGTLYFTVASTKYTPTDFYKDMAEGKPYGQLRKYDPKLKET--TVLHEGFYFANGIALSKNEDF 203 (355)
Q Consensus 126 ~~~~~~~~~~~l~~d~dG~ly~~d~~~~~~~~~~~~~~~~~~~~g~l~~~dp~~~~~--~~~~~~~~~pngi~~~~dg~~ 203 (355)
.+......+..+.+.++-+.|+- ..+...+.+..||..++.. ..+....+.-.++++.+|+..
T Consensus 142 ~fkG~gGvVssl~F~~~~~~~lL---------------~sg~~D~~v~vwnl~~~~tcl~~~~~H~S~vtsL~~~~d~~~ 206 (775)
T KOG0319|consen 142 SFKGHGGVVSSLLFHPHWNRWLL---------------ASGATDGTVRVWNLNDKRTCLHTMILHKSAVTSLAFSEDSLE 206 (775)
T ss_pred EecCCCceEEEEEeCCccchhhe---------------eecCCCceEEEEEcccCchHHHHHHhhhhheeeeeeccCCce
Confidence 56554456777777776433321 1223466788888765433 111223344568899999874
Q ss_pred EEEEeCCCCeEEEEEe
Q 018474 204 VVVCESWKFRCRRYWL 219 (355)
Q Consensus 204 l~v~~~~~~~i~~~~~ 219 (355)
++-. ....-+..|++
T Consensus 207 ~ls~-~RDkvi~vwd~ 221 (775)
T KOG0319|consen 207 LLSV-GRDKVIIVWDL 221 (775)
T ss_pred EEEe-ccCcEEEEeeh
Confidence 4443 33455666666
No 171
>KOG0772 consensus Uncharacterized conserved protein, contains WD40 repeat [Function unknown]
Probab=96.40 E-value=0.13 Score=48.81 Aligned_cols=185 Identities=13% Similarity=0.111 Sum_probs=100.5
Q ss_pred CCCCceEEEeeCCCeEEEEecCCEEEEEEcCCC------eeEEeecc-CCCcccCeEECCCCCEEEEeCCCc-EEEEcCC
Q 018474 51 VNHPEDVSVVVSKGALYTATRDGWVKYFILHNE------TLVNWKHI-DSQSLLGLTTTKDGGVILCDNEKG-LLKVTEE 122 (355)
Q Consensus 51 ~~~p~~i~~d~~~g~l~~~~~~g~i~~~~~~~g------~~~~~~~~-~~~p~~gl~~d~~g~L~v~~~~~g-l~~~~~~ 122 (355)
-+.-.++++|+.+-+++.|+.+-.|..+|. .| .++.+... +..+. .+.+...|..+++-.+.. ...+|.+
T Consensus 167 tk~Vsal~~Dp~GaR~~sGs~Dy~v~~wDf-~gMdas~~~fr~l~P~E~h~i~-sl~ys~Tg~~iLvvsg~aqakl~DRd 244 (641)
T KOG0772|consen 167 TKIVSALAVDPSGARFVSGSLDYTVKFWDF-QGMDASMRSFRQLQPCETHQIN-SLQYSVTGDQILVVSGSAQAKLLDRD 244 (641)
T ss_pred ceEEEEeeecCCCceeeeccccceEEEEec-ccccccchhhhccCcccccccc-eeeecCCCCeEEEEecCcceeEEccC
Confidence 344567889988888999998888888886 33 12222222 23455 777777776444433433 3444566
Q ss_pred C--eEEEcCCc-------------CCcccEEEccCC-cEEEEeCCCCCCCccccccccccCCCCe--EEEEeCCCCeEEE
Q 018474 123 G--VEAIVPDA-------------SFTNDVIAASDG-TLYFTVASTKYTPTDFYKDMAEGKPYGQ--LRKYDPKLKETTV 184 (355)
Q Consensus 123 g--~~~~~~~~-------------~~~~~l~~d~dG-~ly~~d~~~~~~~~~~~~~~~~~~~~g~--l~~~dp~~~~~~~ 184 (355)
| +....... ..+++.+..|+. ..++|.+. .|. +|-.+....+.++
T Consensus 245 G~~~~e~~KGDQYI~Dm~nTKGHia~lt~g~whP~~k~~FlT~s~-----------------DgtlRiWdv~~~k~q~qV 307 (641)
T KOG0772|consen 245 GFEIVEFSKGDQYIRDMYNTKGHIAELTCGCWHPDNKEEFLTCSY-----------------DGTLRIWDVNNTKSQLQV 307 (641)
T ss_pred CceeeeeeccchhhhhhhccCCceeeeeccccccCcccceEEecC-----------------CCcEEEEecCCchhheeE
Confidence 7 22222211 223333444443 34444332 333 4433332234445
Q ss_pred eeccc----c-ccccEEEeCCCCEEEEEeCCCCeEEEEEeCCCCCcceeEec-c-cCCC-CcCceEECCCCCEEEEeecC
Q 018474 185 LHEGF----Y-FANGIALSKNEDFVVVCESWKFRCRRYWLKGDRAGILDAFI-E-NLPG-GPDNINLAPDGSFWIGLIKM 256 (355)
Q Consensus 185 ~~~~~----~-~pngi~~~~dg~~l~v~~~~~~~i~~~~~~~~~~~~~~~~~-~-~~~g-~p~~i~~d~~G~lwv~~~~~ 256 (355)
+.+.. . .+...++++||+ ++.+....+.|..|+. +.........+ + ..+| -...+.++.+|+++.+....
T Consensus 308 ik~k~~~g~Rv~~tsC~~nrdg~-~iAagc~DGSIQ~W~~-~~~~v~p~~~vk~AH~~g~~Itsi~FS~dg~~LlSRg~D 385 (641)
T KOG0772|consen 308 IKTKPAGGKRVPVTSCAWNRDGK-LIAAGCLDGSIQIWDK-GSRTVRPVMKVKDAHLPGQDITSISFSYDGNYLLSRGFD 385 (641)
T ss_pred EeeccCCCcccCceeeecCCCcc-hhhhcccCCceeeeec-CCcccccceEeeeccCCCCceeEEEeccccchhhhccCC
Confidence 43322 1 245678999998 5777777888888876 32222222121 1 2332 23457889999988876553
No 172
>PLN00033 photosystem II stability/assembly factor; Provisional
Probab=96.40 E-value=0.91 Score=43.03 Aligned_cols=136 Identities=10% Similarity=0.019 Sum_probs=69.3
Q ss_pred eEECCCCCEEEEeCCCcEEEEcCCC--e-EEEcCCc-CCcccEEEccCCcEEEEeCCCCCCCccccccccccCCCCeEEE
Q 018474 99 LTTTKDGGVILCDNEKGLLKVTEEG--V-EAIVPDA-SFTNDVIAASDGTLYFTVASTKYTPTDFYKDMAEGKPYGQLRK 174 (355)
Q Consensus 99 l~~d~~g~L~v~~~~~gl~~~~~~g--~-~~~~~~~-~~~~~l~~d~dG~ly~~d~~~~~~~~~~~~~~~~~~~~g~l~~ 174 (355)
+...++|.+++....+.+++-...| . +.+.... ....++.+.++|.+|+.... |.+++
T Consensus 244 v~~~~dG~~~~vg~~G~~~~s~d~G~~~W~~~~~~~~~~l~~v~~~~dg~l~l~g~~------------------G~l~~ 305 (398)
T PLN00033 244 VNRSPDGDYVAVSSRGNFYLTWEPGQPYWQPHNRASARRIQNMGWRADGGLWLLTRG------------------GGLYV 305 (398)
T ss_pred EEEcCCCCEEEEECCccEEEecCCCCcceEEecCCCccceeeeeEcCCCCEEEEeCC------------------ceEEE
Confidence 4555777777776554455554444 2 3333222 56677888888988887532 44544
Q ss_pred EeCCCC-----eEEEeec--cccccccEEEeCCCCEEEEEeCCCCeEEEEEeCCCCCcceeEecccCCCCcCceEECCCC
Q 018474 175 YDPKLK-----ETTVLHE--GFYFANGIALSKNEDFVVVCESWKFRCRRYWLKGDRAGILDAFIENLPGGPDNINLAPDG 247 (355)
Q Consensus 175 ~dp~~~-----~~~~~~~--~~~~pngi~~~~dg~~l~v~~~~~~~i~~~~~~~~~~~~~~~~~~~~~g~p~~i~~d~~G 247 (355)
-+.... ++..... .......+.+..|+. +|++.. +++.....++.+.-+.....+..+.--.++.+.+++
T Consensus 306 S~d~G~~~~~~~f~~~~~~~~~~~l~~v~~~~d~~-~~a~G~--~G~v~~s~D~G~tW~~~~~~~~~~~~ly~v~f~~~~ 382 (398)
T PLN00033 306 SKGTGLTEEDFDFEEADIKSRGFGILDVGYRSKKE-AWAAGG--SGILLRSTDGGKSWKRDKGADNIAANLYSVKFFDDK 382 (398)
T ss_pred ecCCCCcccccceeecccCCCCcceEEEEEcCCCc-EEEEEC--CCcEEEeCCCCcceeEccccCCCCcceeEEEEcCCC
Confidence 332222 2222211 112245567777766 666643 445444454443322211111221112345666678
Q ss_pred CEEEEeec
Q 018474 248 SFWIGLIK 255 (355)
Q Consensus 248 ~lwv~~~~ 255 (355)
+.|+.-..
T Consensus 383 ~g~~~G~~ 390 (398)
T PLN00033 383 KGFVLGND 390 (398)
T ss_pred ceEEEeCC
Confidence 88887654
No 173
>KOG0319 consensus WD40-repeat-containing subunit of the 18S rRNA processing complex [RNA processing and modification]
Probab=96.39 E-value=0.39 Score=47.54 Aligned_cols=93 Identities=12% Similarity=0.017 Sum_probs=53.0
Q ss_pred eEEEeeCCCeEEEEecCCEEEEEEcCCCeeEEeecc-CCCcccCeEECCCCCE---EEEeCCCcEEEEcC-CC---eEEE
Q 018474 56 DVSVVVSKGALYTATRDGWVKYFILHNETLVNWKHI-DSQSLLGLTTTKDGGV---ILCDNEKGLLKVTE-EG---VEAI 127 (355)
Q Consensus 56 ~i~~d~~~g~l~~~~~~g~i~~~~~~~g~~~~~~~~-~~~p~~gl~~d~~g~L---~v~~~~~gl~~~~~-~g---~~~~ 127 (355)
-+++++.++.+-.+..+|.+..+|.+.+...+.... ++... .+.+.++-+. +.+....-+..++- ++ +..+
T Consensus 110 ~ma~~~~g~LlAtggaD~~v~VWdi~~~~~th~fkG~gGvVs-sl~F~~~~~~~lL~sg~~D~~v~vwnl~~~~tcl~~~ 188 (775)
T KOG0319|consen 110 TMAFDPTGTLLATGGADGRVKVWDIKNGYCTHSFKGHGGVVS-SLLFHPHWNRWLLASGATDGTVRVWNLNDKRTCLHTM 188 (775)
T ss_pred EEEEcCCCceEEeccccceEEEEEeeCCEEEEEecCCCceEE-EEEeCCccchhheeecCCCceEEEEEcccCchHHHHH
Confidence 466775555555667799999999877766554443 44455 6777655432 33333323444442 23 2222
Q ss_pred cCCcCCcccEEEccCCcEEEEe
Q 018474 128 VPDASFTNDVIAASDGTLYFTV 149 (355)
Q Consensus 128 ~~~~~~~~~l~~d~dG~ly~~d 149 (355)
......+.++++.+|+.-.++.
T Consensus 189 ~~H~S~vtsL~~~~d~~~~ls~ 210 (775)
T KOG0319|consen 189 ILHKSAVTSLAFSEDSLELLSV 210 (775)
T ss_pred HhhhhheeeeeeccCCceEEEe
Confidence 2222678888888887555543
No 174
>PF01436 NHL: NHL repeat; InterPro: IPR001258 The NHL repeat, named after NCL-1, HT2A and Lin-41, is found largely in a large number of eukaryotic and prokaryotic proteins. For example, the repeat is found in a variety of enzymes of the copper type II, ascorbate-dependent monooxygenase family which catalyse the C terminus alpha-amidation of biological peptides []. In many it occurs in tandem arrays, for example in the ringfinger beta-box, coiled-coil (RBCC) eukaryotic growth regulators []. The 'Brain Tumor' protein (Brat) is one such growth regulator that contains a 6-bladed NHL-repeat beta-propeller [, ]. The NHL repeats are also found in serine/threonine protein kinase (STPK) in diverse range of pathogenic bacteria. These STPK are transmembrane receptors with a intracellular N-terminal kinase domain and extracellular C-terminal sensor domain. In the STPK, PknD, from Mycobacterium tuberculosis, the sensor domain forms a rigid, six-bladed b-propeller composed of NHL repeats with a flexible tether to the transmembrane domain.; GO: 0005515 protein binding; PDB: 3FVZ_A 3FW0_A 1RWL_A 1RWI_A 1Q7F_A.
Probab=96.27 E-value=0.0096 Score=33.18 Aligned_cols=20 Identities=25% Similarity=0.562 Sum_probs=17.1
Q ss_pred CCcccEEEccCCcEEEEeCC
Q 018474 132 SFTNDVIAASDGTLYFTVAS 151 (355)
Q Consensus 132 ~~~~~l~~d~dG~ly~~d~~ 151 (355)
..|.+++++++|+||++|..
T Consensus 2 ~~P~gvav~~~g~i~VaD~~ 21 (28)
T PF01436_consen 2 NYPHGVAVDSDGNIYVADSG 21 (28)
T ss_dssp SSEEEEEEETTSEEEEEECC
T ss_pred cCCcEEEEeCCCCEEEEECC
Confidence 46889999999999999865
No 175
>KOG2919 consensus Guanine nucleotide-binding protein [General function prediction only]
Probab=96.23 E-value=0.49 Score=42.53 Aligned_cols=141 Identities=7% Similarity=-0.016 Sum_probs=77.4
Q ss_pred CeEEEE-ecCCEEEEEEcCCCeeEEeec------cCCCcccCeEECCCCCEEEEeCCCcEEEEc--CCC--eEEEcC---
Q 018474 64 GALYTA-TRDGWVKYFILHNETLVNWKH------IDSQSLLGLTTTKDGGVILCDNEKGLLKVT--EEG--VEAIVP--- 129 (355)
Q Consensus 64 g~l~~~-~~~g~i~~~~~~~g~~~~~~~------~~~~p~~gl~~d~~g~L~v~~~~~gl~~~~--~~g--~~~~~~--- 129 (355)
..+|.. +.+.-|..+|.-+|+.+--.. .-...+ ++.+.+||.-.+|...+-|-.++ ..| ...++.
T Consensus 123 t~l~a~ssr~~PIh~wdaftG~lraSy~~ydh~de~taAh-sL~Fs~DGeqlfaGykrcirvFdt~RpGr~c~vy~t~~~ 201 (406)
T KOG2919|consen 123 TNLFAVSSRDQPIHLWDAFTGKLRASYRAYDHQDEYTAAH-SLQFSPDGEQLFAGYKRCIRVFDTSRPGRDCPVYTTVTK 201 (406)
T ss_pred cceeeeccccCceeeeeccccccccchhhhhhHHhhhhhe-eEEecCCCCeEeecccceEEEeeccCCCCCCcchhhhhc
Confidence 344443 346678888888887542111 011256 88999999866665555555555 355 222221
Q ss_pred -Cc---CCcccEEEccCC-cEEEEeCCCCCCCccccccccccCCCCeEEEEeCCCCeEEEeeccccccccEEEeCCCCEE
Q 018474 130 -DA---SFTNDVIAASDG-TLYFTVASTKYTPTDFYKDMAEGKPYGQLRKYDPKLKETTVLHEGFYFANGIALSKNEDFV 204 (355)
Q Consensus 130 -~~---~~~~~l~~d~dG-~ly~~d~~~~~~~~~~~~~~~~~~~~g~l~~~dp~~~~~~~~~~~~~~pngi~~~~dg~~l 204 (355)
+. .-+..+++.|.. ..+...+- ...-+||+.+-. +-...+........-+++.+||+.+
T Consensus 202 ~k~gq~giisc~a~sP~~~~~~a~gsY---------------~q~~giy~~~~~-~pl~llggh~gGvThL~~~edGn~l 265 (406)
T KOG2919|consen 202 GKFGQKGIISCFAFSPMDSKTLAVGSY---------------GQRVGIYNDDGR-RPLQLLGGHGGGVTHLQWCEDGNKL 265 (406)
T ss_pred ccccccceeeeeeccCCCCcceeeecc---------------cceeeeEecCCC-CceeeecccCCCeeeEEeccCcCee
Confidence 11 334455666643 23322211 012246655521 1222222222223446789999999
Q ss_pred EEEeCCCCeEEEEEeCC
Q 018474 205 VVCESWKFRCRRYWLKG 221 (355)
Q Consensus 205 ~v~~~~~~~i~~~~~~~ 221 (355)
|........|.++|++.
T Consensus 266 fsGaRk~dkIl~WDiR~ 282 (406)
T KOG2919|consen 266 FSGARKDDKILCWDIRY 282 (406)
T ss_pred cccccCCCeEEEEeehh
Confidence 99988888999999854
No 176
>KOG0283 consensus WD40 repeat-containing protein [Function unknown]
Probab=96.22 E-value=0.11 Score=51.75 Aligned_cols=149 Identities=14% Similarity=0.207 Sum_probs=93.1
Q ss_pred CCCceEEEeeCCCeEEE-EecCCEEEEEEcCCCeeEEeeccCCCcccCeEECCCCCE-EEEeCCCcEEEE-cCCC--eEE
Q 018474 52 NHPEDVSVVVSKGALYT-ATRDGWVKYFILHNETLVNWKHIDSQSLLGLTTTKDGGV-ILCDNEKGLLKV-TEEG--VEA 126 (355)
Q Consensus 52 ~~p~~i~~d~~~g~l~~-~~~~g~i~~~~~~~g~~~~~~~~~~~p~~gl~~d~~g~L-~v~~~~~gl~~~-~~~g--~~~ 126 (355)
..-+|+++.|.+++.|+ |+-||++..++..+.++..|.....-+. .+++-++|.. .|++.. |..++ +..+ ++.
T Consensus 410 dfVTcVaFnPvDDryFiSGSLD~KvRiWsI~d~~Vv~W~Dl~~lIT-Avcy~PdGk~avIGt~~-G~C~fY~t~~lk~~~ 487 (712)
T KOG0283|consen 410 DFVTCVAFNPVDDRYFISGSLDGKVRLWSISDKKVVDWNDLRDLIT-AVCYSPDGKGAVIGTFN-GYCRFYDTEGLKLVS 487 (712)
T ss_pred CeeEEEEecccCCCcEeecccccceEEeecCcCeeEeehhhhhhhe-eEEeccCCceEEEEEec-cEEEEEEccCCeEEE
Confidence 34578889987777665 6679999999998888888876655566 8999999985 556644 55444 4444 211
Q ss_pred ---EcCC-c-----CCcccEEEccCC--cEEEEeCCCCCCCccccccccccCCCCeEEEEeCCCCeEEEeecccc---cc
Q 018474 127 ---IVPD-A-----SFTNDVIAASDG--TLYFTVASTKYTPTDFYKDMAEGKPYGQLRKYDPKLKETTVLHEGFY---FA 192 (355)
Q Consensus 127 ---~~~~-~-----~~~~~l~~d~dG--~ly~~d~~~~~~~~~~~~~~~~~~~~g~l~~~dp~~~~~~~~~~~~~---~p 192 (355)
+... . ..+.++.+.+.. .|.||... -+|-.||..+.++.....+.. ..
T Consensus 488 ~~~I~~~~~Kk~~~~rITG~Q~~p~~~~~vLVTSnD------------------SrIRI~d~~~~~lv~KfKG~~n~~SQ 549 (712)
T KOG0283|consen 488 DFHIRLHNKKKKQGKRITGLQFFPGDPDEVLVTSND------------------SRIRIYDGRDKDLVHKFKGFRNTSSQ 549 (712)
T ss_pred eeeEeeccCccccCceeeeeEecCCCCCeEEEecCC------------------CceEEEeccchhhhhhhcccccCCcc
Confidence 1111 0 346667666422 57776543 356667754444332222222 22
Q ss_pred ccEEEeCCCCEEEEEeCCCCeEEEEEeCC
Q 018474 193 NGIALSKNEDFVVVCESWKFRCRRYWLKG 221 (355)
Q Consensus 193 ngi~~~~dg~~l~v~~~~~~~i~~~~~~~ 221 (355)
.-..|+.||++++.+. ..+.|+.|..+.
T Consensus 550 ~~Asfs~Dgk~IVs~s-eDs~VYiW~~~~ 577 (712)
T KOG0283|consen 550 ISASFSSDGKHIVSAS-EDSWVYIWKNDS 577 (712)
T ss_pred eeeeEccCCCEEEEee-cCceEEEEeCCC
Confidence 3356889999766654 678888888643
No 177
>KOG0640 consensus mRNA cleavage stimulating factor complex; subunit 1 [RNA processing and modification]
Probab=96.21 E-value=0.15 Score=45.48 Aligned_cols=135 Identities=14% Similarity=0.214 Sum_probs=77.6
Q ss_pred CeEECCCCCEEEEeCCC-cEEEEcCCC---------------------eEEEcCCcCCcccEEEccCCcEEEEeCCCCCC
Q 018474 98 GLTTTKDGGVILCDNEK-GLLKVTEEG---------------------VEAIVPDASFTNDVIAASDGTLYFTVASTKYT 155 (355)
Q Consensus 98 gl~~d~~g~L~v~~~~~-gl~~~~~~g---------------------~~~~~~~~~~~~~l~~d~dG~ly~~d~~~~~~ 155 (355)
.-++.+||.|+.+...+ .|-.++-+. ++++.+....+|++.+.|...|.++.+.
T Consensus 117 ~aafs~DG~lvATGsaD~SIKildvermlaks~~~em~~~~~qa~hPvIRTlYDH~devn~l~FHPre~ILiS~sr---- 192 (430)
T KOG0640|consen 117 AAAFSPDGSLVATGSADASIKILDVERMLAKSKPKEMISGDTQARHPVIRTLYDHVDEVNDLDFHPRETILISGSR---- 192 (430)
T ss_pred eeeeCCCCcEEEccCCcceEEEeehhhhhhhcchhhhccCCcccCCceEeehhhccCcccceeecchhheEEeccC----
Confidence 56788899887755433 233333110 1112222267888999998888887554
Q ss_pred CccccccccccCCCCeEEEEeCCCCe----EEEeeccccccccEEEeCCCCEEEEEeCCCCeEEEEEeCCCCCcceeEec
Q 018474 156 PTDFYKDMAEGKPYGQLRKYDPKLKE----TTVLHEGFYFANGIALSKNEDFVVVCESWKFRCRRYWLKGDRAGILDAFI 231 (355)
Q Consensus 156 ~~~~~~~~~~~~~~g~l~~~dp~~~~----~~~~~~~~~~pngi~~~~dg~~l~v~~~~~~~i~~~~~~~~~~~~~~~~~ 231 (355)
.+.+-.||-..-. +++ .+....-..|.++|.|.++.+. +....+..|+++ +++.|+
T Consensus 193 -------------D~tvKlFDfsK~saKrA~K~-~qd~~~vrsiSfHPsGefllvg-TdHp~~rlYdv~-----T~Qcfv 252 (430)
T KOG0640|consen 193 -------------DNTVKLFDFSKTSAKRAFKV-FQDTEPVRSISFHPSGEFLLVG-TDHPTLRLYDVN-----TYQCFV 252 (430)
T ss_pred -------------CCeEEEEecccHHHHHHHHH-hhccceeeeEeecCCCceEEEe-cCCCceeEEecc-----ceeEee
Confidence 3334334421111 111 2222334578899999977665 567788889974 345555
Q ss_pred ccCC-----CCcCceEECCCCCEEEEeecC
Q 018474 232 ENLP-----GGPDNINLAPDGSFWIGLIKM 256 (355)
Q Consensus 232 ~~~~-----g~p~~i~~d~~G~lwv~~~~~ 256 (355)
...| +....+..++.|++||.....
T Consensus 253 sanPd~qht~ai~~V~Ys~t~~lYvTaSkD 282 (430)
T KOG0640|consen 253 SANPDDQHTGAITQVRYSSTGSLYVTASKD 282 (430)
T ss_pred ecCcccccccceeEEEecCCccEEEEeccC
Confidence 4333 112224578889999987653
No 178
>KOG0646 consensus WD40 repeat protein [General function prediction only]
Probab=96.14 E-value=0.66 Score=43.54 Aligned_cols=148 Identities=17% Similarity=0.131 Sum_probs=86.1
Q ss_pred CCC-ceEEEeeCCCeEEE-EecCCEEEEEEcCCCeeEEeeccCC-CcccCeEECCCCCEEEEeCCCcEEEEc-C------
Q 018474 52 NHP-EDVSVVVSKGALYT-ATRDGWVKYFILHNETLVNWKHIDS-QSLLGLTTTKDGGVILCDNEKGLLKVT-E------ 121 (355)
Q Consensus 52 ~~p-~~i~~d~~~g~l~~-~~~~g~i~~~~~~~g~~~~~~~~~~-~p~~gl~~d~~g~L~v~~~~~gl~~~~-~------ 121 (355)
++| .+++.+ +.|.+.+ ++..|.||.+...+|....+...-- .+. .|.+..||..+++...+|.+.+. -
T Consensus 81 Pg~v~al~s~-n~G~~l~ag~i~g~lYlWelssG~LL~v~~aHYQ~IT-cL~fs~dgs~iiTgskDg~V~vW~l~~lv~a 158 (476)
T KOG0646|consen 81 PGPVHALASS-NLGYFLLAGTISGNLYLWELSSGILLNVLSAHYQSIT-CLKFSDDGSHIITGSKDGAVLVWLLTDLVSA 158 (476)
T ss_pred ccceeeeecC-CCceEEEeecccCcEEEEEeccccHHHHHHhhcccee-EEEEeCCCcEEEecCCCccEEEEEEEeeccc
Confidence 444 455666 4555554 5578999999999997654322111 244 88888899988887666633332 1
Q ss_pred --CC----eEEEcCCcCCcccEEEccCC---cEEEEeCCCCCCCccccccccccCCCCeEEEEeCCCCeEEEeecccccc
Q 018474 122 --EG----VEAIVPDASFTNDVIAASDG---TLYFTVASTKYTPTDFYKDMAEGKPYGQLRKYDPKLKETTVLHEGFYFA 192 (355)
Q Consensus 122 --~g----~~~~~~~~~~~~~l~~d~dG---~ly~~d~~~~~~~~~~~~~~~~~~~~g~l~~~dp~~~~~~~~~~~~~~p 192 (355)
++ +..+....-.+.|+.++.-| +||-+. ....+-.||...+.+-.-..-...+
T Consensus 159 ~~~~~~~p~~~f~~HtlsITDl~ig~Gg~~~rl~TaS------------------~D~t~k~wdlS~g~LLlti~fp~si 220 (476)
T KOG0646|consen 159 DNDHSVKPLHIFSDHTLSITDLQIGSGGTNARLYTAS------------------EDRTIKLWDLSLGVLLLTITFPSSI 220 (476)
T ss_pred ccCCCccceeeeccCcceeEEEEecCCCccceEEEec------------------CCceEEEEEeccceeeEEEecCCcc
Confidence 11 11122222345555555433 233211 1334566777667543322233456
Q ss_pred ccEEEeCCCCEEEEEeCCCCeEEEEEeC
Q 018474 193 NGIALSKNEDFVVVCESWKFRCRRYWLK 220 (355)
Q Consensus 193 ngi~~~~dg~~l~v~~~~~~~i~~~~~~ 220 (355)
+.++++|-++.+|+. +..+.|+...+.
T Consensus 221 ~av~lDpae~~~yiG-t~~G~I~~~~~~ 247 (476)
T KOG0646|consen 221 KAVALDPAERVVYIG-TEEGKIFQNLLF 247 (476)
T ss_pred eeEEEcccccEEEec-CCcceEEeeehh
Confidence 889999999877775 457889988763
No 179
>PF14870 PSII_BNR: Photosynthesis system II assembly factor YCF48; PDB: 2XBG_A.
Probab=96.08 E-value=1.1 Score=40.79 Aligned_cols=178 Identities=16% Similarity=0.117 Sum_probs=80.5
Q ss_pred CCCceEEEeeCCCeEEEEecCCEEEEEEcCCCeeEEeeccCC-----CcccCeEECCCCCEEEEeCCCcEEEEc-CCC--
Q 018474 52 NHPEDVSVVVSKGALYTATRDGWVKYFILHNETLVNWKHIDS-----QSLLGLTTTKDGGVILCDNEKGLLKVT-EEG-- 123 (355)
Q Consensus 52 ~~p~~i~~d~~~g~l~~~~~~g~i~~~~~~~g~~~~~~~~~~-----~p~~gl~~d~~g~L~v~~~~~gl~~~~-~~g-- 123 (355)
....+|.+. +.+.-|+....+.|++=.-....++....... +-. .+.++ +...|++... +++... ..|
T Consensus 17 ~~l~dV~F~-d~~~G~~VG~~g~il~T~DGG~tW~~~~~~~~~~~~~~l~-~I~f~-~~~g~ivG~~-g~ll~T~DgG~t 92 (302)
T PF14870_consen 17 KPLLDVAFV-DPNHGWAVGAYGTILKTTDGGKTWQPVSLDLDNPFDYHLN-SISFD-GNEGWIVGEP-GLLLHTTDGGKT 92 (302)
T ss_dssp S-EEEEEES-SSS-EEEEETTTEEEEESSTTSS-EE-----S-----EEE-EEEEE-TTEEEEEEET-TEEEEESSTTSS
T ss_pred CceEEEEEe-cCCEEEEEecCCEEEEECCCCccccccccCCCccceeeEE-EEEec-CCceEEEcCC-ceEEEecCCCCC
Confidence 456677777 56666665556766554321224554432211 123 45554 3456776433 554444 344
Q ss_pred eEEEcC--C-cCCcccEEEccCCcEEEEeCCCCCCCccccccccccCCCCeEEEEeCCCCeEEEeecc-ccccccEEEeC
Q 018474 124 VEAIVP--D-ASFTNDVIAASDGTLYFTVASTKYTPTDFYKDMAEGKPYGQLRKYDPKLKETTVLHEG-FYFANGIALSK 199 (355)
Q Consensus 124 ~~~~~~--~-~~~~~~l~~d~dG~ly~~d~~~~~~~~~~~~~~~~~~~~g~l~~~dp~~~~~~~~~~~-~~~pngi~~~~ 199 (355)
-+.+.. . +..+..+....++.+++... .|.+|+-.-....++.+... ...-+.+..++
T Consensus 93 W~~v~l~~~lpgs~~~i~~l~~~~~~l~~~------------------~G~iy~T~DgG~tW~~~~~~~~gs~~~~~r~~ 154 (302)
T PF14870_consen 93 WERVPLSSKLPGSPFGITALGDGSAELAGD------------------RGAIYRTTDGGKTWQAVVSETSGSINDITRSS 154 (302)
T ss_dssp -EE----TT-SS-EEEEEEEETTEEEEEET------------------T--EEEESSTTSSEEEEE-S----EEEEEE-T
T ss_pred cEEeecCCCCCCCeeEEEEcCCCcEEEEcC------------------CCcEEEeCCCCCCeeEcccCCcceeEeEEECC
Confidence 444432 1 13445555545555555422 35677665545566665433 22334566788
Q ss_pred CCCEEEEEeCCCCeEEEEEeCCCCCcceeEecccCCCCcCceEECCCCCEEEEeec
Q 018474 200 NEDFVVVCESWKFRCRRYWLKGDRAGILDAFIENLPGGPDNINLAPDGSFWIGLIK 255 (355)
Q Consensus 200 dg~~l~v~~~~~~~i~~~~~~~~~~~~~~~~~~~~~g~p~~i~~d~~G~lwv~~~~ 255 (355)
||+.+.++ .++.+++-+-.|... .+.+.........+|.++++|++|+.+.+
T Consensus 155 dG~~vavs--~~G~~~~s~~~G~~~--w~~~~r~~~~riq~~gf~~~~~lw~~~~G 206 (302)
T PF14870_consen 155 DGRYVAVS--SRGNFYSSWDPGQTT--WQPHNRNSSRRIQSMGFSPDGNLWMLARG 206 (302)
T ss_dssp TS-EEEEE--TTSSEEEEE-TT-SS---EEEE--SSS-EEEEEE-TTS-EEEEETT
T ss_pred CCcEEEEE--CcccEEEEecCCCcc--ceEEccCccceehhceecCCCCEEEEeCC
Confidence 99855554 445665544333221 22221122233466788999999998854
No 180
>KOG0301 consensus Phospholipase A2-activating protein (contains WD40 repeats) [Lipid transport and metabolism]
Probab=96.05 E-value=1.4 Score=43.55 Aligned_cols=168 Identities=16% Similarity=0.099 Sum_probs=87.5
Q ss_pred CCCeEEEEecCCEEEEEEcCCCeeEEeec-cCCCcccCeEECCCCCEEEEeCCCcEEEEcCCC--eEEEcCCcCCcccEE
Q 018474 62 SKGALYTATRDGWVKYFILHNETLVNWKH-IDSQSLLGLTTTKDGGVILCDNEKGLLKVTEEG--VEAIVPDASFTNDVI 138 (355)
Q Consensus 62 ~~g~l~~~~~~g~i~~~~~~~g~~~~~~~-~~~~p~~gl~~d~~g~L~v~~~~~gl~~~~~~g--~~~~~~~~~~~~~l~ 138 (355)
+++++.++..|..|.++.+.+.....+.. ...... ++..+.++.|.-+.|. ...++.+.| ...+......+-.++
T Consensus 70 ~~~~l~~g~~D~~i~v~~~~~~~P~~~LkgH~snVC-~ls~~~~~~~iSgSWD-~TakvW~~~~l~~~l~gH~asVWAv~ 147 (745)
T KOG0301|consen 70 DKGRLVVGGMDTTIIVFKLSQAEPLYTLKGHKSNVC-SLSIGEDGTLISGSWD-STAKVWRIGELVYSLQGHTASVWAVA 147 (745)
T ss_pred cCcceEeecccceEEEEecCCCCchhhhhcccccee-eeecCCcCceEecccc-cceEEecchhhhcccCCcchheeeee
Confidence 56778888888888888875554433322 234577 8888888886656554 445554433 333333334455555
Q ss_pred EccCCcEEEEeCCCCCCCccccccccccCCCCeEEEEeCCCCeEEEeeccccccccEEEeCCCCEEEEEeCCCCeEEEEE
Q 018474 139 AASDGTLYFTVASTKYTPTDFYKDMAEGKPYGQLRKYDPKLKETTVLHEGFYFANGIALSKNEDFVVVCESWKFRCRRYW 218 (355)
Q Consensus 139 ~d~dG~ly~~d~~~~~~~~~~~~~~~~~~~~g~l~~~dp~~~~~~~~~~~~~~pngi~~~~dg~~l~v~~~~~~~i~~~~ 218 (355)
.-+++ .|+|.+. .-.+..|.. ....+++......-.|+++-++..++ +-...+-|..++
T Consensus 148 ~l~e~-~~vTgsa-----------------DKtIklWk~-~~~l~tf~gHtD~VRgL~vl~~~~fl--ScsNDg~Ir~w~ 206 (745)
T KOG0301|consen 148 SLPEN-TYVTGSA-----------------DKTIKLWKG-GTLLKTFSGHTDCVRGLAVLDDSHFL--SCSNDGSIRLWD 206 (745)
T ss_pred ecCCC-cEEeccC-----------------cceeeeccC-CchhhhhccchhheeeeEEecCCCeE--eecCCceEEEEe
Confidence 55666 6776544 123333432 12223333223345677777776533 223445666666
Q ss_pred eCCCCCcceeEecccCCCCcCceEECCCCCEEEEeecC
Q 018474 219 LKGDRAGILDAFIENLPGGPDNINLAPDGSFWIGLIKM 256 (355)
Q Consensus 219 ~~~~~~~~~~~~~~~~~g~p~~i~~d~~G~lwv~~~~~ 256 (355)
++|..+.+. + +...+-..+...-.+.+.|++...
T Consensus 207 ~~ge~l~~~--~--ghtn~vYsis~~~~~~~Ivs~gED 240 (745)
T KOG0301|consen 207 LDGEVLLEM--H--GHTNFVYSISMALSDGLIVSTGED 240 (745)
T ss_pred ccCceeeee--e--ccceEEEEEEecCCCCeEEEecCC
Confidence 655432111 1 111122223323345577887664
No 181
>KOG0282 consensus mRNA splicing factor [Function unknown]
Probab=96.04 E-value=0.12 Score=48.51 Aligned_cols=138 Identities=10% Similarity=0.153 Sum_probs=91.3
Q ss_pred CeEECC-CCCEEEEeCCCcEE-EEc--CCC--eEEEcCCcCCcccEEEccCCcEEEEeCCCCCCCccccccccccCCCCe
Q 018474 98 GLTTTK-DGGVILCDNEKGLL-KVT--EEG--VEAIVPDASFTNDVIAASDGTLYFTVASTKYTPTDFYKDMAEGKPYGQ 171 (355)
Q Consensus 98 gl~~d~-~g~L~v~~~~~gl~-~~~--~~g--~~~~~~~~~~~~~l~~d~dG~ly~~d~~~~~~~~~~~~~~~~~~~~g~ 171 (355)
.+.+-+ .+.|+.....++.+ .++ .++ ++++.....-+.++.+.++|+-+++.+- ...
T Consensus 219 ai~~fp~~~hLlLS~gmD~~vklW~vy~~~~~lrtf~gH~k~Vrd~~~s~~g~~fLS~sf-----------------D~~ 281 (503)
T KOG0282|consen 219 AIQWFPKKGHLLLSGGMDGLVKLWNVYDDRRCLRTFKGHRKPVRDASFNNCGTSFLSASF-----------------DRF 281 (503)
T ss_pred hhhhccceeeEEEecCCCceEEEEEEecCcceehhhhcchhhhhhhhccccCCeeeeeec-----------------cee
Confidence 344444 67777766555533 333 234 5655544467888999999987777543 345
Q ss_pred EEEEeCCCCeEEEeeccccccccEEEeCCCCEEEEEeCCCCeEEEEEeCCCCCcceeEecccCCCCcCceEECCCCCEEE
Q 018474 172 LRKYDPKLKETTVLHEGFYFANGIALSKNEDFVVVCESWKFRCRRYWLKGDRAGILDAFIENLPGGPDNINLAPDGSFWI 251 (355)
Q Consensus 172 l~~~dp~~~~~~~~~~~~~~pngi~~~~dg~~l~v~~~~~~~i~~~~~~~~~~~~~~~~~~~~~g~p~~i~~d~~G~lwv 251 (355)
+-.||.+||+...-......|..+.+.||+..++++....++|..||+...++ .+.+...+.. ...+.+=++|+.+|
T Consensus 282 lKlwDtETG~~~~~f~~~~~~~cvkf~pd~~n~fl~G~sd~ki~~wDiRs~kv--vqeYd~hLg~-i~~i~F~~~g~rFi 358 (503)
T KOG0282|consen 282 LKLWDTETGQVLSRFHLDKVPTCVKFHPDNQNIFLVGGSDKKIRQWDIRSGKV--VQEYDRHLGA-ILDITFVDEGRRFI 358 (503)
T ss_pred eeeeccccceEEEEEecCCCceeeecCCCCCcEEEEecCCCcEEEEeccchHH--HHHHHhhhhh-eeeeEEccCCceEe
Confidence 66789889987665556677999999999977889988899999999865432 1112222322 23355556788888
Q ss_pred Eeec
Q 018474 252 GLIK 255 (355)
Q Consensus 252 ~~~~ 255 (355)
++..
T Consensus 359 ssSD 362 (503)
T KOG0282|consen 359 SSSD 362 (503)
T ss_pred eecc
Confidence 7765
No 182
>KOG2139 consensus WD40 repeat protein [General function prediction only]
Probab=96.03 E-value=1.2 Score=40.77 Aligned_cols=147 Identities=13% Similarity=0.137 Sum_probs=86.7
Q ss_pred CCCcccCeEECCCCCEEEEeCCC--cEEEEcC-CC-eEEEc-CCcCCcccEEEccCCcEEEEeCCCCCCCcccccccccc
Q 018474 92 DSQSLLGLTTTKDGGVILCDNEK--GLLKVTE-EG-VEAIV-PDASFTNDVIAASDGTLYFTVASTKYTPTDFYKDMAEG 166 (355)
Q Consensus 92 ~~~p~~gl~~d~~g~L~v~~~~~--gl~~~~~-~g-~~~~~-~~~~~~~~l~~d~dG~ly~~d~~~~~~~~~~~~~~~~~ 166 (355)
+..|.+.|...+||..|+..+.+ .+...++ +| ...+. .......-+..+|||...|+.+-
T Consensus 194 gh~pVtsmqwn~dgt~l~tAS~gsssi~iWdpdtg~~~pL~~~glgg~slLkwSPdgd~lfaAt~--------------- 258 (445)
T KOG2139|consen 194 GHNPVTSMQWNEDGTILVTASFGSSSIMIWDPDTGQKIPLIPKGLGGFSLLKWSPDGDVLFAATC--------------- 258 (445)
T ss_pred CCceeeEEEEcCCCCEEeecccCcceEEEEcCCCCCcccccccCCCceeeEEEcCCCCEEEEecc---------------
Confidence 33444489999999988876542 3666664 56 44433 22345556789999976665432
Q ss_pred CCCCeEEEEeCCCCeEE--EeeccccccccEEEeCCCCEEEEEeCCCCeEEEEEeCCCC--------CcceeEecccCC-
Q 018474 167 KPYGQLRKYDPKLKETT--VLHEGFYFANGIALSKNEDFVVVCESWKFRCRRYWLKGDR--------AGILDAFIENLP- 235 (355)
Q Consensus 167 ~~~g~l~~~dp~~~~~~--~~~~~~~~pngi~~~~dg~~l~v~~~~~~~i~~~~~~~~~--------~~~~~~~~~~~~- 235 (355)
.+....++. +..++ ....+...-.+.+.+|+|++|+++-.+.-+|++...++.. .......+| ++
T Consensus 259 --davfrlw~e-~q~wt~erw~lgsgrvqtacWspcGsfLLf~~sgsp~lysl~f~~~~~~~~~~~~~k~~lliaD-L~e 334 (445)
T KOG2139|consen 259 --DAVFRLWQE-NQSWTKERWILGSGRVQTACWSPCGSFLLFACSGSPRLYSLTFDGEDSVFLRPQSIKRVLLIAD-LQE 334 (445)
T ss_pred --cceeeeehh-cccceecceeccCCceeeeeecCCCCEEEEEEcCCceEEEEeecCCCccccCcccceeeeeecc-chh
Confidence 112222221 11111 1122223456778999999999999998899888765421 011111121 11
Q ss_pred -----------CCcCceEECCCCCEEEEeecCC
Q 018474 236 -----------GGPDNINLAPDGSFWIGLIKMN 257 (355)
Q Consensus 236 -----------g~p~~i~~d~~G~lwv~~~~~~ 257 (355)
|-+.-++.|+.|.+.+....+.
T Consensus 335 ~ti~ag~~l~cgeaq~lawDpsGeyLav~fKg~ 367 (445)
T KOG2139|consen 335 VTICAGQRLCCGEAQCLAWDPSGEYLAVIFKGQ 367 (445)
T ss_pred hhhhcCcccccCccceeeECCCCCEEEEEEcCC
Confidence 2345588999999888887754
No 183
>KOG0285 consensus Pleiotropic regulator 1 [RNA processing and modification]
Probab=96.00 E-value=1.2 Score=40.63 Aligned_cols=150 Identities=16% Similarity=0.168 Sum_probs=94.9
Q ss_pred CCCCCCceEEEeeCCCeEEEEecCCEEEEEEcCCCeeEEeec-cCCCcccCeEECCCCCEEEEeCCCcEEEEc--CCC--
Q 018474 49 GCVNHPEDVSVVVSKGALYTATRDGWVKYFILHNETLVNWKH-IDSQSLLGLTTTKDGGVILCDNEKGLLKVT--EEG-- 123 (355)
Q Consensus 49 ~~~~~p~~i~~d~~~g~l~~~~~~g~i~~~~~~~g~~~~~~~-~~~~p~~gl~~d~~g~L~v~~~~~gl~~~~--~~g-- 123 (355)
|....-+++++.+.--++|.+..++.|..+|.++.++.+-.. .....+ ++.+.+.-++.++...+...|+- .+.
T Consensus 191 Ghi~~vr~vavS~rHpYlFs~gedk~VKCwDLe~nkvIR~YhGHlS~V~-~L~lhPTldvl~t~grDst~RvWDiRtr~~ 269 (460)
T KOG0285|consen 191 GHIETVRGVAVSKRHPYLFSAGEDKQVKCWDLEYNKVIRHYHGHLSGVY-CLDLHPTLDVLVTGGRDSTIRVWDIRTRAS 269 (460)
T ss_pred chhheeeeeeecccCceEEEecCCCeeEEEechhhhhHHHhccccceeE-EEeccccceeEEecCCcceEEEeeecccce
Confidence 556667888888666788889999999999998776543222 122355 66666766777766566677764 344
Q ss_pred eEEEcCCcCCcccEEEcc-CCcEEEEeCCCCCCCccccccccccCCCCeEEEEeCCCCeE-EEeeccccccccEEEeCCC
Q 018474 124 VEAIVPDASFTNDVIAAS-DGTLYFTVASTKYTPTDFYKDMAEGKPYGQLRKYDPKLKET-TVLHEGFYFANGIALSKNE 201 (355)
Q Consensus 124 ~~~~~~~~~~~~~l~~d~-dG~ly~~d~~~~~~~~~~~~~~~~~~~~g~l~~~dp~~~~~-~~~~~~~~~pngi~~~~dg 201 (355)
+..+.....-+.++.+-+ |++++-+.. .+.+..||...|+. ..+...-.....++++|+.
T Consensus 270 V~~l~GH~~~V~~V~~~~~dpqvit~S~------------------D~tvrlWDl~agkt~~tlt~hkksvral~lhP~e 331 (460)
T KOG0285|consen 270 VHVLSGHTNPVASVMCQPTDPQVITGSH------------------DSTVRLWDLRAGKTMITLTHHKKSVRALCLHPKE 331 (460)
T ss_pred EEEecCCCCcceeEEeecCCCceEEecC------------------CceEEEeeeccCceeEeeecccceeeEEecCCch
Confidence 666665545566666554 667765533 34566777765543 3333333345678889887
Q ss_pred CEEEEEeCCCCeEEEEEe
Q 018474 202 DFVVVCESWKFRCRRYWL 219 (355)
Q Consensus 202 ~~l~v~~~~~~~i~~~~~ 219 (355)
. ++.+ ...+.|-++.+
T Consensus 332 ~-~fAS-as~dnik~w~~ 347 (460)
T KOG0285|consen 332 N-LFAS-ASPDNIKQWKL 347 (460)
T ss_pred h-hhhc-cCCccceeccC
Confidence 5 4444 45667877776
No 184
>KOG1273 consensus WD40 repeat protein [General function prediction only]
Probab=95.97 E-value=1.1 Score=40.12 Aligned_cols=56 Identities=7% Similarity=0.025 Sum_probs=37.2
Q ss_pred cccCeEECCCCCE-EEEeCCCcEEEEc-CC-C-eEEEcCCcCCcccEEEccCCcEEEEeCC
Q 018474 95 SLLGLTTTKDGGV-ILCDNEKGLLKVT-EE-G-VEAIVPDASFTNDVIAASDGTLYFTVAS 151 (355)
Q Consensus 95 p~~gl~~d~~g~L-~v~~~~~gl~~~~-~~-g-~~~~~~~~~~~~~l~~d~dG~ly~~d~~ 151 (355)
.. ++.+.+-|.+ -++...+.++.+| .+ + .+.+.....-+.+++.++||+..+|.+.
T Consensus 26 a~-~~~Fs~~G~~lAvGc~nG~vvI~D~~T~~iar~lsaH~~pi~sl~WS~dgr~LltsS~ 85 (405)
T KOG1273|consen 26 AE-CCQFSRWGDYLAVGCANGRVVIYDFDTFRIARMLSAHVRPITSLCWSRDGRKLLTSSR 85 (405)
T ss_pred cc-eEEeccCcceeeeeccCCcEEEEEccccchhhhhhccccceeEEEecCCCCEeeeecC
Confidence 44 6777777764 4455455677777 33 3 3444444456788999999999988665
No 185
>KOG0299 consensus U3 snoRNP-associated protein (contains WD40 repeats) [RNA processing and modification]
Probab=95.92 E-value=0.5 Score=44.25 Aligned_cols=202 Identities=15% Similarity=0.168 Sum_probs=107.7
Q ss_pred CCCCceEEEeeCCCeEEEEecCCEEEEEEcCCCeeE-EeeccCCCcccCeEEC-CCCCEEEEeCCCcEEEEcC--CC-eE
Q 018474 51 VNHPEDVSVVVSKGALYTATRDGWVKYFILHNETLV-NWKHIDSQSLLGLTTT-KDGGVILCDNEKGLLKVTE--EG-VE 125 (355)
Q Consensus 51 ~~~p~~i~~d~~~g~l~~~~~~g~i~~~~~~~g~~~-~~~~~~~~p~~gl~~d-~~g~L~v~~~~~gl~~~~~--~g-~~ 125 (355)
...--++++.+++..|..+..+..|..++..+.+-. .+....+.+. ++++- ...+||.+....++-.++- -. ++
T Consensus 202 ~keil~~avS~Dgkylatgg~d~~v~Iw~~~t~ehv~~~~ghr~~V~-~L~fr~gt~~lys~s~Drsvkvw~~~~~s~ve 280 (479)
T KOG0299|consen 202 VKEILTLAVSSDGKYLATGGRDRHVQIWDCDTLEHVKVFKGHRGAVS-SLAFRKGTSELYSASADRSVKVWSIDQLSYVE 280 (479)
T ss_pred cceeEEEEEcCCCcEEEecCCCceEEEecCcccchhhccccccccee-eeeeecCccceeeeecCCceEEEehhHhHHHH
Confidence 334456777755555555666777778887666433 2232234455 77763 3457898876665544442 22 33
Q ss_pred EEcCCc---------CCcccEEEc-cCC--cEE-EEeCCC-CC-----CCcc----ccccccccCCCCeEEEEeCCCCeE
Q 018474 126 AIVPDA---------SFTNDVIAA-SDG--TLY-FTVAST-KY-----TPTD----FYKDMAEGKPYGQLRKYDPKLKET 182 (355)
Q Consensus 126 ~~~~~~---------~~~~~l~~d-~dG--~ly-~~d~~~-~~-----~~~~----~~~~~~~~~~~g~l~~~dp~~~~~ 182 (355)
++.... ..=..+++- .|. ++| +.+.+. .| .++. ...+++.|...|.|+.|+..+++.
T Consensus 281 tlyGHqd~v~~IdaL~reR~vtVGgrDrT~rlwKi~eesqlifrg~~~sidcv~~In~~HfvsGSdnG~IaLWs~~KKkp 360 (479)
T KOG0299|consen 281 TLYGHQDGVLGIDALSRERCVTVGGRDRTVRLWKIPEESQLIFRGGEGSIDCVAFINDEHFVSGSDNGSIALWSLLKKKP 360 (479)
T ss_pred HHhCCccceeeechhcccceEEeccccceeEEEeccccceeeeeCCCCCeeeEEEecccceeeccCCceEEEeeecccCc
Confidence 322221 111112222 122 233 111110 00 0011 112345667788888888765543
Q ss_pred EEe---eccc-------c---ccccEEEeCCCCEEEEEeCCCCeEEEEEeCCCCCcceeEecc-cCCCCcCceEECCCCC
Q 018474 183 TVL---HEGF-------Y---FANGIALSKNEDFVVVCESWKFRCRRYWLKGDRAGILDAFIE-NLPGGPDNINLAPDGS 248 (355)
Q Consensus 183 ~~~---~~~~-------~---~pngi~~~~dg~~l~v~~~~~~~i~~~~~~~~~~~~~~~~~~-~~~g~p~~i~~d~~G~ 248 (355)
-.. +++. . .-+++++.+..+ |+.+.+..++|..+-++.+ ....+.+.+ .+.|+.+.+.+..+|+
T Consensus 361 lf~~~~AHgv~~~~~~~~~~~Witsla~i~~sd-L~asGS~~G~vrLW~i~~g-~r~i~~l~~ls~~GfVNsl~f~~sgk 438 (479)
T KOG0299|consen 361 LFTSRLAHGVIPELDPVNGNFWITSLAVIPGSD-LLASGSWSGCVRLWKIEDG-LRAINLLYSLSLVGFVNSLAFSNSGK 438 (479)
T ss_pred eeEeeccccccCCccccccccceeeeEecccCc-eEEecCCCCceEEEEecCC-ccccceeeecccccEEEEEEEccCCC
Confidence 211 2221 1 346788888776 8888888777777666432 333444432 3567778888888997
Q ss_pred -EEEEeec
Q 018474 249 -FWIGLIK 255 (355)
Q Consensus 249 -lwv~~~~ 255 (355)
+|+++..
T Consensus 439 ~ivagiGk 446 (479)
T KOG0299|consen 439 RIVAGIGK 446 (479)
T ss_pred EEEEeccc
Confidence 8888765
No 186
>PLN00033 photosystem II stability/assembly factor; Provisional
Probab=95.92 E-value=1.6 Score=41.39 Aligned_cols=110 Identities=7% Similarity=-0.070 Sum_probs=58.4
Q ss_pred cccEEEeCCCCEEEEEeCCCCeEEEEEeCCCCCc--ceeEeccc-CCCCcCceEECCCCCEEEEeecCCchhhHhhhcch
Q 018474 192 ANGIALSKNEDFVVVCESWKFRCRRYWLKGDRAG--ILDAFIEN-LPGGPDNINLAPDGSFWIGLIKMNQTGVRAIQKCR 268 (355)
Q Consensus 192 pngi~~~~dg~~l~v~~~~~~~i~~~~~~~~~~~--~~~~~~~~-~~g~p~~i~~d~~G~lwv~~~~~~~~~~~~~~~~~ 268 (355)
-.++.+.+|+. +|++. ..+.+.+-.-.+..-. ++....-. .+....++.+.+++.+|++...
T Consensus 283 l~~v~~~~dg~-l~l~g-~~G~l~~S~d~G~~~~~~~f~~~~~~~~~~~l~~v~~~~d~~~~a~G~~------------- 347 (398)
T PLN00033 283 IQNMGWRADGG-LWLLT-RGGGLYVSKGTGLTEEDFDFEEADIKSRGFGILDVGYRSKKEAWAAGGS------------- 347 (398)
T ss_pred eeeeeEcCCCC-EEEEe-CCceEEEecCCCCcccccceeecccCCCCcceEEEEEcCCCcEEEEECC-------------
Confidence 45677888887 55554 3456655443332110 12211101 1111344667788899998765
Q ss_pred hHHHHHHhccchhhcccCCCCCCceEEEEEeCCCCeEEEEEECCCCCcccceeEEEE-eCCEEEEeecCCCeEEEe
Q 018474 269 EKWELLDAYPGLISLLLPMGSDAGARVVKVDGNDGKIIRDFNDPDATYISFVTSAAE-FDGNLYLASLQSNFIGIL 343 (355)
Q Consensus 269 ~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~g~~~~~~~~~~g~~~~~~~~~~~-~~g~L~v~~~~~~~i~~~ 343 (355)
+.+++-.. .|+........++. ....+.+.+ ++++.|+... +..|.|+
T Consensus 348 ------------------------G~v~~s~D-~G~tW~~~~~~~~~-~~~ly~v~f~~~~~g~~~G~-~G~il~~ 396 (398)
T PLN00033 348 ------------------------GILLRSTD-GGKSWKRDKGADNI-AANLYSVKFFDDKKGFVLGN-DGVLLRY 396 (398)
T ss_pred ------------------------CcEEEeCC-CCcceeEccccCCC-CcceeEEEEcCCCceEEEeC-CcEEEEe
Confidence 33444444 77766665432322 234445664 5589999887 4445554
No 187
>PHA02713 hypothetical protein; Provisional
Probab=95.81 E-value=0.99 Score=44.96 Aligned_cols=185 Identities=12% Similarity=0.082 Sum_probs=89.9
Q ss_pred CCeEEEEec-C------CEEEEEEcCCCeeEEeeccC-CCcccCeEECCCCCEEEEeCCC------cEEEEcC-CC-eEE
Q 018474 63 KGALYTATR-D------GWVKYFILHNETLVNWKHID-SQSLLGLTTTKDGGVILCDNEK------GLLKVTE-EG-VEA 126 (355)
Q Consensus 63 ~g~l~~~~~-~------g~i~~~~~~~g~~~~~~~~~-~~p~~gl~~d~~g~L~v~~~~~------gl~~~~~-~g-~~~ 126 (355)
++.+|+... + ..+.++|+.+++|....... .+..-+++. -+|+||+..... .+.+|++ +. -+.
T Consensus 303 ~~~IYviGG~~~~~~~~~~v~~Yd~~~n~W~~~~~m~~~R~~~~~~~-~~g~IYviGG~~~~~~~~sve~Ydp~~~~W~~ 381 (557)
T PHA02713 303 DNEIIIAGGYNFNNPSLNKVYKINIENKIHVELPPMIKNRCRFSLAV-IDDTIYAIGGQNGTNVERTIECYTMGDDKWKM 381 (557)
T ss_pred CCEEEEEcCCCCCCCccceEEEEECCCCeEeeCCCCcchhhceeEEE-ECCEEEEECCcCCCCCCceEEEEECCCCeEEE
Confidence 667786422 1 35789999888887654322 111102222 378999865332 2667775 44 444
Q ss_pred EcCCc-CCcccEEEccCCcEEEEeCCCCCCC---ccccccc--cc-cCCCCeEEEEeCCCCeEEEeeccc--cccccEEE
Q 018474 127 IVPDA-SFTNDVIAASDGTLYFTVASTKYTP---TDFYKDM--AE-GKPYGQLRKYDPKLKETTVLHEGF--YFANGIAL 197 (355)
Q Consensus 127 ~~~~~-~~~~~l~~d~dG~ly~~d~~~~~~~---~~~~~~~--~~-~~~~g~l~~~dp~~~~~~~~~~~~--~~pngi~~ 197 (355)
++.-. ..-..-++.-+|.||+......... ......+ .. ......+.+|||.+.+++.+..-. ....+++.
T Consensus 382 ~~~mp~~r~~~~~~~~~g~IYviGG~~~~~~~~~~~~~~~~~~~~~~~~~~~ve~YDP~td~W~~v~~m~~~r~~~~~~~ 461 (557)
T PHA02713 382 LPDMPIALSSYGMCVLDQYIYIIGGRTEHIDYTSVHHMNSIDMEEDTHSSNKVIRYDTVNNIWETLPNFWTGTIRPGVVS 461 (557)
T ss_pred CCCCCcccccccEEEECCEEEEEeCCCcccccccccccccccccccccccceEEEECCCCCeEeecCCCCcccccCcEEE
Confidence 33322 1111112234789998653210000 0000000 00 011346999999999998765321 12234443
Q ss_pred eCCCCEEEEEeCCC------CeEEEEEeCCCCCcceeEecccCCC--CcCceEECCCCCEEEEee
Q 018474 198 SKNEDFVVVCESWK------FRCRRYWLKGDRAGILDAFIENLPG--GPDNINLAPDGSFWIGLI 254 (355)
Q Consensus 198 ~~dg~~l~v~~~~~------~~i~~~~~~~~~~~~~~~~~~~~~g--~p~~i~~d~~G~lwv~~~ 254 (355)
. +++ +|+..-.. ..+.+|+++.. .+.+... .++. .--+++. -+|+||+.-.
T Consensus 462 ~-~~~-IYv~GG~~~~~~~~~~ve~Ydp~~~--~~W~~~~-~m~~~r~~~~~~~-~~~~iyv~Gg 520 (557)
T PHA02713 462 H-KDD-IYVVCDIKDEKNVKTCIFRYNTNTY--NGWELIT-TTESRLSALHTIL-HDNTIMMLHC 520 (557)
T ss_pred E-CCE-EEEEeCCCCCCccceeEEEecCCCC--CCeeEcc-ccCcccccceeEE-ECCEEEEEee
Confidence 3 444 88875321 34678887531 1232222 2221 1123333 2578988654
No 188
>KOG0639 consensus Transducin-like enhancer of split protein (contains WD40 repeats) [Chromatin structure and dynamics]
Probab=95.76 E-value=0.41 Score=45.42 Aligned_cols=172 Identities=11% Similarity=0.064 Sum_probs=94.8
Q ss_pred EeeCCCeEEEEecCCEEEEEEcCCCeeEEeec-cC--CCcccCeEECCCCCEEEEeCCCc-EEEEc-CCC--eEEEcCCc
Q 018474 59 VVVSKGALYTATRDGWVKYFILHNETLVNWKH-ID--SQSLLGLTTTKDGGVILCDNEKG-LLKVT-EEG--VEAIVPDA 131 (355)
Q Consensus 59 ~d~~~g~l~~~~~~g~i~~~~~~~g~~~~~~~-~~--~~p~~gl~~d~~g~L~v~~~~~g-l~~~~-~~g--~~~~~~~~ 131 (355)
..++++.|.++.+-..+..+|...-....-.. .. ...+ .+++.+|-++.++....| |..+| .+. ++.+....
T Consensus 473 L~pdgrtLivGGeastlsiWDLAapTprikaeltssapaCy-ALa~spDakvcFsccsdGnI~vwDLhnq~~VrqfqGht 551 (705)
T KOG0639|consen 473 LLPDGRTLIVGGEASTLSIWDLAAPTPRIKAELTSSAPACY-ALAISPDAKVCFSCCSDGNIAVWDLHNQTLVRQFQGHT 551 (705)
T ss_pred ecCCCceEEeccccceeeeeeccCCCcchhhhcCCcchhhh-hhhcCCccceeeeeccCCcEEEEEcccceeeecccCCC
Confidence 33456667776665566666664332211111 11 2245 677778888877665656 44555 344 56565555
Q ss_pred CCcccEEEccCC-cEEEEeCCCCCCCccccccccccCCCCeEEEEeCCCCeEEEeeccc-cccccEEEeCCCCEEEEEeC
Q 018474 132 SFTNDVIAASDG-TLYFTVASTKYTPTDFYKDMAEGKPYGQLRKYDPKLKETTVLHEGF-YFANGIALSKNEDFVVVCES 209 (355)
Q Consensus 132 ~~~~~l~~d~dG-~ly~~d~~~~~~~~~~~~~~~~~~~~g~l~~~dp~~~~~~~~~~~~-~~pngi~~~~dg~~l~v~~~ 209 (355)
.....|.+.+|| +||-+. ....+.+||..+++- ....++ +..-.+-.+|.+.++.+.-.
T Consensus 552 DGascIdis~dGtklWTGG------------------lDntvRcWDlregrq-lqqhdF~SQIfSLg~cP~~dWlavGMe 612 (705)
T KOG0639|consen 552 DGASCIDISKDGTKLWTGG------------------LDNTVRCWDLREGRQ-LQQHDFSSQIFSLGYCPTGDWLAVGME 612 (705)
T ss_pred CCceeEEecCCCceeecCC------------------Cccceeehhhhhhhh-hhhhhhhhhheecccCCCccceeeecc
Confidence 678888999999 677542 245677888765531 111121 11223445688887766543
Q ss_pred CCCeEEEEEeCCCCCcceeEecccCCCCcCceEECCCCCEEEEeec
Q 018474 210 WKFRCRRYWLKGDRAGILDAFIENLPGGPDNINLAPDGSFWIGLIK 255 (355)
Q Consensus 210 ~~~~i~~~~~~~~~~~~~~~~~~~~~g~p~~i~~d~~G~lwv~~~~ 255 (355)
++.+++...++.. +++.- ....-.-.+-+..-|+.||++..
T Consensus 613 -ns~vevlh~skp~--kyqlh--lheScVLSlKFa~cGkwfvStGk 653 (705)
T KOG0639|consen 613 -NSNVEVLHTSKPE--KYQLH--LHESCVLSLKFAYCGKWFVSTGK 653 (705)
T ss_pred -cCcEEEEecCCcc--ceeec--ccccEEEEEEecccCceeeecCc
Confidence 4567777654421 12110 00011122456788999999976
No 189
>KOG0639 consensus Transducin-like enhancer of split protein (contains WD40 repeats) [Chromatin structure and dynamics]
Probab=95.68 E-value=0.3 Score=46.35 Aligned_cols=143 Identities=17% Similarity=0.162 Sum_probs=79.4
Q ss_pred EeeCCCeEEEEecCCEEEEEEcCCC-eeEEee-----ccCCCcccCeEECCCCC-EEEEeCCCcEEEEcC---CC-eEE-
Q 018474 59 VVVSKGALYTATRDGWVKYFILHNE-TLVNWK-----HIDSQSLLGLTTTKDGG-VILCDNEKGLLKVTE---EG-VEA- 126 (355)
Q Consensus 59 ~d~~~g~l~~~~~~g~i~~~~~~~g-~~~~~~-----~~~~~p~~gl~~d~~g~-L~v~~~~~gl~~~~~---~g-~~~- 126 (355)
+......+|++.. |.|..+|...- .-..+. ...+.+. ...+-+||+ |+|+.-...+-..|. +- ++.
T Consensus 427 IS~~trhVyTgGk-gcVKVWdis~pg~k~PvsqLdcl~rdnyiR-SckL~pdgrtLivGGeastlsiWDLAapTprikae 504 (705)
T KOG0639|consen 427 ISNPTRHVYTGGK-GCVKVWDISQPGNKSPVSQLDCLNRDNYIR-SCKLLPDGRTLIVGGEASTLSIWDLAAPTPRIKAE 504 (705)
T ss_pred ecCCcceeEecCC-CeEEEeeccCCCCCCccccccccCccccee-eeEecCCCceEEeccccceeeeeeccCCCcchhhh
Confidence 3334666777654 45777776221 111111 1123344 455667886 666543333444442 22 221
Q ss_pred EcCCcCCcccEEEccCCcEEEEeCCCCCCCccccccccccCCCCeEEEEeCCCCeEEEeecc-ccccccEEEeCCCCEEE
Q 018474 127 IVPDASFTNDVIAASDGTLYFTVASTKYTPTDFYKDMAEGKPYGQLRKYDPKLKETTVLHEG-FYFANGIALSKNEDFVV 205 (355)
Q Consensus 127 ~~~~~~~~~~l~~d~dG~ly~~d~~~~~~~~~~~~~~~~~~~~g~l~~~dp~~~~~~~~~~~-~~~pngi~~~~dg~~l~ 205 (355)
+......-..+++++|-++-|+.-+ .|.|..||..+..+.....+ .-....|.+++||-.|
T Consensus 505 ltssapaCyALa~spDakvcFsccs-----------------dGnI~vwDLhnq~~VrqfqGhtDGascIdis~dGtkl- 566 (705)
T KOG0639|consen 505 LTSSAPACYALAISPDAKVCFSCCS-----------------DGNIAVWDLHNQTLVRQFQGHTDGASCIDISKDGTKL- 566 (705)
T ss_pred cCCcchhhhhhhcCCccceeeeecc-----------------CCcEEEEEcccceeeecccCCCCCceeEEecCCCcee-
Confidence 2222133445788899888876433 57788899865543322222 2345568899999855
Q ss_pred EEeCCCCeEEEEEeCC
Q 018474 206 VCESWKFRCRRYWLKG 221 (355)
Q Consensus 206 v~~~~~~~i~~~~~~~ 221 (355)
|+.-..+.|.+||+..
T Consensus 567 WTGGlDntvRcWDlre 582 (705)
T KOG0639|consen 567 WTGGLDNTVRCWDLRE 582 (705)
T ss_pred ecCCCccceeehhhhh
Confidence 5555678999999854
No 190
>KOG0771 consensus Prolactin regulatory element-binding protein/Protein transport protein SEC12p [Intracellular trafficking, secretion, and vesicular transport]
Probab=95.55 E-value=0.89 Score=42.09 Aligned_cols=185 Identities=14% Similarity=0.075 Sum_probs=91.3
Q ss_pred ceEEEeeCCCeEEEEecCCEEEEEE-cCCCeeEEeeccCCCcccCeEECCCCCEEEEeCCCcEEEEc-CCC--eEEEcCC
Q 018474 55 EDVSVVVSKGALYTATRDGWVKYFI-LHNETLVNWKHIDSQSLLGLTTTKDGGVILCDNEKGLLKVT-EEG--VEAIVPD 130 (355)
Q Consensus 55 ~~i~~d~~~g~l~~~~~~g~i~~~~-~~~g~~~~~~~~~~~p~~gl~~d~~g~L~v~~~~~gl~~~~-~~g--~~~~~~~ 130 (355)
-.+++..++..+-++..||.++.++ |..............+. .|.+.+||.+.+..........+ .+| +....+.
T Consensus 148 k~vaf~~~gs~latgg~dg~lRv~~~Ps~~t~l~e~~~~~eV~-DL~FS~dgk~lasig~d~~~VW~~~~g~~~a~~t~~ 226 (398)
T KOG0771|consen 148 KVVAFNGDGSKLATGGTDGTLRVWEWPSMLTILEEIAHHAEVK-DLDFSPDGKFLASIGADSARVWSVNTGAALARKTPF 226 (398)
T ss_pred eEEEEcCCCCEeeeccccceEEEEecCcchhhhhhHhhcCccc-cceeCCCCcEEEEecCCceEEEEeccCchhhhcCCc
Confidence 4555553445566666777777776 53322222222334577 89999999887766555444444 355 3333321
Q ss_pred c--CCcccE--EEccC-CcEEEEeCCCCCC-CccccccccccCCCCeEEEEeCCCCeEEEeeccccccccEEEeCCCCEE
Q 018474 131 A--SFTNDV--IAASD-GTLYFTVASTKYT-PTDFYKDMAEGKPYGQLRKYDPKLKETTVLHEGFYFANGIALSKNEDFV 204 (355)
Q Consensus 131 ~--~~~~~l--~~d~d-G~ly~~d~~~~~~-~~~~~~~~~~~~~~g~l~~~dp~~~~~~~~~~~~~~pngi~~~~dg~~l 204 (355)
. .....+ ..|++ .++++.....+.. +. .....++..+ +-.+.+...........++++.||+++
T Consensus 227 ~k~~~~~~cRF~~d~~~~~l~laa~~~~~~~v~---------~~~~~~w~~~-~~l~~~~~~~~~~siSsl~VS~dGkf~ 296 (398)
T KOG0771|consen 227 SKDEMFSSCRFSVDNAQETLRLAASQFPGGGVR---------LCDISLWSGS-NFLRLRKKIKRFKSISSLAVSDDGKFL 296 (398)
T ss_pred ccchhhhhceecccCCCceEEEEEecCCCCcee---------EEEeeeeccc-cccchhhhhhccCcceeEEEcCCCcEE
Confidence 1 111112 22222 2677665431100 00 0011122222 111222222223345578899999955
Q ss_pred EEEeCCCCeEEEEEeCCCCCcceeEecccCCCCcCceEECCCCCEEEEe
Q 018474 205 VVCESWKFRCRRYWLKGDRAGILDAFIENLPGGPDNINLAPDGSFWIGL 253 (355)
Q Consensus 205 ~v~~~~~~~i~~~~~~~~~~~~~~~~~~~~~g~p~~i~~d~~G~lwv~~ 253 (355)
-+ .+..+-|..|+... ......+.....+...++.+.++-+.....
T Consensus 297 Al-GT~dGsVai~~~~~--lq~~~~vk~aH~~~VT~ltF~Pdsr~~~sv 342 (398)
T KOG0771|consen 297 AL-GTMDGSVAIYDAKS--LQRLQYVKEAHLGFVTGLTFSPDSRYLASV 342 (398)
T ss_pred EE-eccCCcEEEEEece--eeeeEeehhhheeeeeeEEEcCCcCccccc
Confidence 55 46678888888632 222222222233456667777766665554
No 191
>KOG0650 consensus WD40 repeat nucleolar protein Bop1, involved in ribosome biogenesis [Translation, ribosomal structure and biogenesis]
Probab=95.54 E-value=1.2 Score=43.41 Aligned_cols=83 Identities=13% Similarity=0.077 Sum_probs=47.1
Q ss_pred CCccccccCCCCCCCcCcc---CceEecCCCCCCCceEEEeeCCCeEEEEecCCEEEEEEcCCCeeEEeeccCCCcccCe
Q 018474 23 SVSSLASLLSISKESSSMK---GLTKLGEGCVNHPEDVSVVVSKGALYTATRDGWVKYFILHNETLVNWKHIDSQSLLGL 99 (355)
Q Consensus 23 ~~~~~~~~~~~~~~~~~l~---~~~~~~~~~~~~p~~i~~d~~~g~l~~~~~~g~i~~~~~~~g~~~~~~~~~~~p~~gl 99 (355)
.++|..+....|.+++--. .+..+.-|.-..-.+|.+++.+..|-.|+.+|.+..+...+|+-.......+.+. ++
T Consensus 369 niDpe~LiPkLPsp~dLrPFPt~~~lvyrGHtg~Vr~iSvdp~G~wlasGsdDGtvriWEi~TgRcvr~~~~d~~I~-~v 447 (733)
T KOG0650|consen 369 NIDPESLIPKLPSPKDLRPFPTRCALVYRGHTGLVRSISVDPSGEWLASGSDDGTVRIWEIATGRCVRTVQFDSEIR-SV 447 (733)
T ss_pred cCCHHHhcccCCChhhcCCCcceeeeeEeccCCeEEEEEecCCcceeeecCCCCcEEEEEeecceEEEEEeecceeE-EE
Confidence 3566654455565443211 1223333444556788899655545556678988888888886443323334456 77
Q ss_pred EECCCCC
Q 018474 100 TTTKDGG 106 (355)
Q Consensus 100 ~~d~~g~ 106 (355)
++.+.+.
T Consensus 448 aw~P~~~ 454 (733)
T KOG0650|consen 448 AWNPLSD 454 (733)
T ss_pred EecCCCC
Confidence 7776554
No 192
>TIGR03074 PQQ_membr_DH membrane-bound PQQ-dependent dehydrogenase, glucose/quinate/shikimate family. This protein family has a phylogenetic distribution very similar to that coenzyme PQQ biosynthesis enzymes, as shown by partial phylogenetic profiling. Members of this family have several predicted transmembrane helices in the N-terminal region, and include the quinoprotein glucose dehydrogenase (EC 1.1.5.2) of Escherichia coli and the quinate/shikimate dehydrogenase of Acinetobacter sp. ADP1 (EC 1.1.99.25). Sequences closely related except for the absense of the N-terminal hydrophobic region, scoring in the gray zone between the trusted and noise cutoffs, include PQQ-dependent glycerol (EC 1.1.99.22) and and other polyol (sugar alcohol) dehydrogenases.
Probab=95.53 E-value=3.2 Score=42.85 Aligned_cols=60 Identities=18% Similarity=0.220 Sum_probs=40.5
Q ss_pred CCCeEEEEecCCEEEEEEcCCCeeEEeecc-CC--C-------cccCeEEC-----------------CCCCEEEEeCCC
Q 018474 62 SKGALYTATRDGWVKYFILHNETLVNWKHI-DS--Q-------SLLGLTTT-----------------KDGGVILCDNEK 114 (355)
Q Consensus 62 ~~g~l~~~~~~g~i~~~~~~~g~~~~~~~~-~~--~-------p~~gl~~d-----------------~~g~L~v~~~~~ 114 (355)
.++.+|+++.++.|+.+|.++|+.. |... .. . .. |+..- .++++|+++...
T Consensus 193 vgg~lYv~t~~~~V~ALDa~TGk~l-W~~d~~~~~~~~~~~~~cR-Gvay~~~p~~~~~~~~~~~p~~~~~rV~~~T~Dg 270 (764)
T TIGR03074 193 VGDTLYLCTPHNKVIALDAATGKEK-WKFDPKLKTEAGRQHQTCR-GVSYYDAPAAAAGPAAPAAPADCARRIILPTSDA 270 (764)
T ss_pred ECCEEEEECCCCeEEEEECCCCcEE-EEEcCCCCccccccccccc-ceEEecCCcccccccccccccccCCEEEEecCCC
Confidence 3789999999999999999999743 2111 00 0 11 22221 245899988777
Q ss_pred cEEEEc-CCC
Q 018474 115 GLLKVT-EEG 123 (355)
Q Consensus 115 gl~~~~-~~g 123 (355)
.++.+| ++|
T Consensus 271 ~LiALDA~TG 280 (764)
T TIGR03074 271 RLIALDADTG 280 (764)
T ss_pred eEEEEECCCC
Confidence 799999 577
No 193
>KOG0772 consensus Uncharacterized conserved protein, contains WD40 repeat [Function unknown]
Probab=95.49 E-value=2.1 Score=41.03 Aligned_cols=184 Identities=13% Similarity=0.116 Sum_probs=89.7
Q ss_pred CCCceEEEeeCCCeEEEEecCCEEEEEEcCCCeeEEeec----------cCCCcc--cCeEECCCC-CEEEEeCCCcEEE
Q 018474 52 NHPEDVSVVVSKGALYTATRDGWVKYFILHNETLVNWKH----------IDSQSL--LGLTTTKDG-GVILCDNEKGLLK 118 (355)
Q Consensus 52 ~~p~~i~~d~~~g~l~~~~~~g~i~~~~~~~g~~~~~~~----------~~~~p~--~gl~~d~~g-~L~v~~~~~gl~~ 118 (355)
..-.++.+.+.++.+.+.+.......+|...-++.++.. +.++.. ++-.+.++. ..+++...+|-+|
T Consensus 215 h~i~sl~ys~Tg~~iLvvsg~aqakl~DRdG~~~~e~~KGDQYI~Dm~nTKGHia~lt~g~whP~~k~~FlT~s~DgtlR 294 (641)
T KOG0772|consen 215 HQINSLQYSVTGDQILVVSGSAQAKLLDRDGFEIVEFSKGDQYIRDMYNTKGHIAELTCGCWHPDNKEEFLTCSYDGTLR 294 (641)
T ss_pred cccceeeecCCCCeEEEEecCcceeEEccCCceeeeeeccchhhhhhhccCCceeeeeccccccCcccceEEecCCCcEE
Confidence 344556666555555555544445555552223333221 112221 022333333 4566555556444
Q ss_pred Ec---CCC--eEEEcCCc-----CCcccEEEccCCcEEEEeCCCCCCCccccccccccCCCCeEEEEeCCCCeEEE--e-
Q 018474 119 VT---EEG--VEAIVPDA-----SFTNDVIAASDGTLYFTVASTKYTPTDFYKDMAEGKPYGQLRKYDPKLKETTV--L- 185 (355)
Q Consensus 119 ~~---~~g--~~~~~~~~-----~~~~~l~~d~dG~ly~~d~~~~~~~~~~~~~~~~~~~~g~l~~~dp~~~~~~~--~- 185 (355)
+. ... .+++.... ..+...++++||.++.+. -..|.|-.|+..+..+.+ .
T Consensus 295 iWdv~~~k~q~qVik~k~~~g~Rv~~tsC~~nrdg~~iAag-----------------c~DGSIQ~W~~~~~~v~p~~~v 357 (641)
T KOG0772|consen 295 IWDVNNTKSQLQVIKTKPAGGKRVPVTSCAWNRDGKLIAAG-----------------CLDGSIQIWDKGSRTVRPVMKV 357 (641)
T ss_pred EEecCCchhheeEEeeccCCCcccCceeeecCCCcchhhhc-----------------ccCCceeeeecCCcccccceEe
Confidence 43 222 44443322 456677889999875431 114455555531111111 1
Q ss_pred ---eccccccccEEEeCCCCEEEEEeCCCCeEEEEEeCCCCCcceeEecccCCC-Cc-CceEECCCCCEEEEeec
Q 018474 186 ---HEGFYFANGIALSKNEDFVVVCESWKFRCRRYWLKGDRAGILDAFIENLPG-GP-DNINLAPDGSFWIGLIK 255 (355)
Q Consensus 186 ---~~~~~~pngi~~~~dg~~l~v~~~~~~~i~~~~~~~~~~~~~~~~~~~~~g-~p-~~i~~d~~G~lwv~~~~ 255 (355)
.........|+|+.||+. +.+-...+.+..|+++..+. ...... +++. +| .+.+++++-.|.++-..
T Consensus 358 k~AH~~g~~Itsi~FS~dg~~-LlSRg~D~tLKvWDLrq~kk-pL~~~t-gL~t~~~~tdc~FSPd~kli~TGtS 429 (641)
T KOG0772|consen 358 KDAHLPGQDITSISFSYDGNY-LLSRGFDDTLKVWDLRQFKK-PLNVRT-GLPTPFPGTDCCFSPDDKLILTGTS 429 (641)
T ss_pred eeccCCCCceeEEEeccccch-hhhccCCCceeeeecccccc-chhhhc-CCCccCCCCccccCCCceEEEeccc
Confidence 112223467899999984 45555567788888854221 011111 2322 22 45788988887665433
No 194
>PRK13616 lipoprotein LpqB; Provisional
Probab=95.45 E-value=3.2 Score=41.57 Aligned_cols=225 Identities=12% Similarity=0.044 Sum_probs=113.7
Q ss_pred eEEEEecCCEEEEEEcCCCeeEEeecc---CCCcccCeEECCCCCE--EEEe------C-CCcEEEEcCCC-eEEEcCCc
Q 018474 65 ALYTATRDGWVKYFILHNETLVNWKHI---DSQSLLGLTTTKDGGV--ILCD------N-EKGLLKVTEEG-VEAIVPDA 131 (355)
Q Consensus 65 ~l~~~~~~g~i~~~~~~~g~~~~~~~~---~~~p~~gl~~d~~g~L--~v~~------~-~~gl~~~~~~g-~~~~~~~~ 131 (355)
.+|+-. +|.+.+++. +........ ...+. ..++.++|+. |+.. . ...|+..+..+ .+.+...
T Consensus 322 ~~~~v~-~G~l~~~~~--~~~~pv~g~~g~~~~vs-spaiSpdG~~vA~v~~~~~~~~d~~s~Lwv~~~gg~~~~lt~g- 396 (591)
T PRK13616 322 GLHALV-DGSLVSVDG--QGVTPVPGAFGQMGNIT-SAALSRSGRQVAAVVTLGRGAPDPASSLWVGPLGGVAVQVLEG- 396 (591)
T ss_pred cceEEE-CCeEEEecC--CCeeeCCCccccccCcc-cceECCCCCEEEEEEeecCCCCCcceEEEEEeCCCcceeeecC-
Confidence 455333 777777753 222222111 12344 6667777763 3331 1 12355555333 3333222
Q ss_pred CCcccEEEccCC-cEEEEeCCCCCCCccccccccccCCCCeEEEEeCCCCeEEEeeccccccccEEEeCCCCEEEEEeCC
Q 018474 132 SFTNDVIAASDG-TLYFTVASTKYTPTDFYKDMAEGKPYGQLRKYDPKLKETTVLHEGFYFANGIALSKNEDFVVVCESW 210 (355)
Q Consensus 132 ~~~~~l~~d~dG-~ly~~d~~~~~~~~~~~~~~~~~~~~g~l~~~dp~~~~~~~~~~~~~~pngi~~~~dg~~l~v~~~~ 210 (355)
.....-.+++|| .||+.....+ ...+......+.++..+.++++... .-......+.++|||+.+.+.-.
T Consensus 397 ~~~t~PsWspDG~~lw~v~dg~~------~~~v~~~~~~gql~~~~vd~ge~~~--~~~g~Issl~wSpDG~RiA~i~~- 467 (591)
T PRK13616 397 HSLTRPSWSLDADAVWVVVDGNT------VVRVIRDPATGQLARTPVDASAVAS--RVPGPISELQLSRDGVRAAMIIG- 467 (591)
T ss_pred CCCCCceECCCCCceEEEecCcc------eEEEeccCCCceEEEEeccCchhhh--ccCCCcCeEEECCCCCEEEEEEC-
Confidence 224455788995 7888743211 0111111224567766655555432 11123667899999998877653
Q ss_pred CCeEEEEEe---CCCC--CcceeEecccCCCCcCceEECCCCCEEEEeecCCchhhHhhhcchhHHHHHHhccchhhccc
Q 018474 211 KFRCRRYWL---KGDR--AGILDAFIENLPGGPDNINLAPDGSFWIGLIKMNQTGVRAIQKCREKWELLDAYPGLISLLL 285 (355)
Q Consensus 211 ~~~i~~~~~---~~~~--~~~~~~~~~~~~g~p~~i~~d~~G~lwv~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 285 (355)
++|+.--+ ++.. ++....+...+...+..+..-.++.|.|++...
T Consensus 468 -g~v~Va~Vvr~~~G~~~l~~~~~l~~~l~~~~~~l~W~~~~~L~V~~~~~----------------------------- 517 (591)
T PRK13616 468 -GKVYLAVVEQTEDGQYALTNPREVGPGLGDTAVSLDWRTGDSLVVGRSDP----------------------------- 517 (591)
T ss_pred -CEEEEEEEEeCCCCceeecccEEeecccCCccccceEecCCEEEEEecCC-----------------------------
Confidence 56766333 2221 222222222232223456566677888776431
Q ss_pred CCCCCCceEEEEEeCCCCeEEEEEECCCCCcccceeEEEEeCCEEEEeecCCCeEEEee
Q 018474 286 PMGSDAGARVVKVDGNDGKIIRDFNDPDATYISFVTSAAEFDGNLYLASLQSNFIGILP 344 (355)
Q Consensus 286 ~~~~~~~~~v~~~~~~~g~~~~~~~~~~g~~~~~~~~~~~~~g~L~v~~~~~~~i~~~~ 344 (355)
...+++++. +|.....+ +.+.....+..+....+.||+++.. .+..++
T Consensus 518 ------~~~v~~v~v-DG~~~~~~--~~~n~~~~v~~vaa~~~~iyv~~~~--g~~~l~ 565 (591)
T PRK13616 518 ------EHPVWYVNL-DGSNSDAL--PSRNLSAPVVAVAASPSTVYVTDAR--AVLQLP 565 (591)
T ss_pred ------CCceEEEec-CCcccccc--CCCCccCceEEEecCCceEEEEcCC--ceEEec
Confidence 134788888 88765543 2222234455555556789998753 344443
No 195
>COG4247 Phy 3-phytase (myo-inositol-hexaphosphate 3-phosphohydrolase) [Lipid metabolism]
Probab=95.42 E-value=1.7 Score=38.06 Aligned_cols=82 Identities=20% Similarity=0.299 Sum_probs=49.8
Q ss_pred eEEEEeCCCCeEEEeec-------cccccccEEEeCCCC----EEEEEeCCCCeEEEEEeCC---CCCcc--eeEecccC
Q 018474 171 QLRKYDPKLKETTVLHE-------GFYFANGIALSKNED----FVVVCESWKFRCRRYWLKG---DRAGI--LDAFIENL 234 (355)
Q Consensus 171 ~l~~~dp~~~~~~~~~~-------~~~~pngi~~~~dg~----~l~v~~~~~~~i~~~~~~~---~~~~~--~~~~~~~~ 234 (355)
.+|.+||+++.++.+.+ ..+.+.|+|+..+.+ .++++. ..+-+.+|.+-. .+.+. .+.| .+
T Consensus 127 ~~y~Idp~~~~L~sitD~n~p~ss~~s~~YGl~lyrs~ktgd~yvfV~~-~qG~~~Qy~l~d~gnGkv~~k~vR~f--k~ 203 (364)
T COG4247 127 VFYKIDPNPQYLESITDSNAPYSSSSSSAYGLALYRSPKTGDYYVFVNR-RQGDIAQYKLIDQGNGKVGTKLVRQF--KI 203 (364)
T ss_pred EEEEeCCCccceeeccCCCCccccCcccceeeEEEecCCcCcEEEEEec-CCCceeEEEEEecCCceEcceeeEee--ec
Confidence 47788888777665533 356678999887654 344443 346677887722 12221 2222 34
Q ss_pred CCCcCceEEC-CCCCEEEEeec
Q 018474 235 PGGPDNINLA-PDGSFWIGLIK 255 (355)
Q Consensus 235 ~g~p~~i~~d-~~G~lwv~~~~ 255 (355)
+..-.|++.| .-|.+||+...
T Consensus 204 ~tQTEG~VaDdEtG~LYIaeEd 225 (364)
T COG4247 204 PTQTEGMVADDETGFLYIAEED 225 (364)
T ss_pred CCcccceeeccccceEEEeecc
Confidence 4556777665 55899999765
No 196
>KOG0296 consensus Angio-associated migratory cell protein (contains WD40 repeats) [Function unknown]
Probab=95.37 E-value=2.2 Score=39.07 Aligned_cols=147 Identities=8% Similarity=-0.009 Sum_probs=80.6
Q ss_pred eEEEeeCCCeEEEEecCCEEEEEEcCCCeeEEe-eccCCCcccCeEECCCCCEEEEeCCCcEEEEc--CCC-eE-EEcCC
Q 018474 56 DVSVVVSKGALYTATRDGWVKYFILHNETLVNW-KHIDSQSLLGLTTTKDGGVILCDNEKGLLKVT--EEG-VE-AIVPD 130 (355)
Q Consensus 56 ~i~~d~~~g~l~~~~~~g~i~~~~~~~g~~~~~-~~~~~~p~~gl~~d~~g~L~v~~~~~gl~~~~--~~g-~~-~~~~~ 130 (355)
+++.+|....+-.|..|..-+.++..+|.+.-- ........ .+.+..+|.+.++..-.|.+++. .+| .+ .+...
T Consensus 69 avsl~P~~~l~aTGGgDD~AflW~~~~ge~~~eltgHKDSVt-~~~FshdgtlLATGdmsG~v~v~~~stg~~~~~~~~e 147 (399)
T KOG0296|consen 69 AVSLHPNNNLVATGGGDDLAFLWDISTGEFAGELTGHKDSVT-CCSFSHDGTLLATGDMSGKVLVFKVSTGGEQWKLDQE 147 (399)
T ss_pred EEEeCCCCceEEecCCCceEEEEEccCCcceeEecCCCCceE-EEEEccCceEEEecCCCccEEEEEcccCceEEEeecc
Confidence 445554233233345566677888777763221 11223455 78888888887765455656554 355 32 22222
Q ss_pred cCCcccEEEccCCcEEEEeCCCCCCCccccccccccCCCCeEEEEeCCCCeEEEeeccc-cccccEEEeCCCCEEEEEeC
Q 018474 131 ASFTNDVIAASDGTLYFTVASTKYTPTDFYKDMAEGKPYGQLRKYDPKLKETTVLHEGF-YFANGIALSKNEDFVVVCES 209 (355)
Q Consensus 131 ~~~~~~l~~d~dG~ly~~d~~~~~~~~~~~~~~~~~~~~g~l~~~dp~~~~~~~~~~~~-~~pngi~~~~dg~~l~v~~~ 209 (355)
...+.=+...|.+.+.++. ...|.++.|.-.++....+..+. ..-+.-.+.|||+.+....
T Consensus 148 ~~dieWl~WHp~a~illAG-----------------~~DGsvWmw~ip~~~~~kv~~Gh~~~ct~G~f~pdGKr~~tgy- 209 (399)
T KOG0296|consen 148 VEDIEWLKWHPRAHILLAG-----------------STDGSVWMWQIPSQALCKVMSGHNSPCTCGEFIPDGKRILTGY- 209 (399)
T ss_pred cCceEEEEecccccEEEee-----------------cCCCcEEEEECCCcceeeEecCCCCCcccccccCCCceEEEEe-
Confidence 1222223455555555543 33678888876553333333332 2233446889999666555
Q ss_pred CCCeEEEEEeCC
Q 018474 210 WKFRCRRYWLKG 221 (355)
Q Consensus 210 ~~~~i~~~~~~~ 221 (355)
..+.|..+++..
T Consensus 210 ~dgti~~Wn~kt 221 (399)
T KOG0296|consen 210 DDGTIIVWNPKT 221 (399)
T ss_pred cCceEEEEecCC
Confidence 467888888743
No 197
>KOG1539 consensus WD repeat protein [General function prediction only]
Probab=95.31 E-value=3.5 Score=41.78 Aligned_cols=140 Identities=13% Similarity=0.133 Sum_probs=82.7
Q ss_pred CcccCeEECCCCCE-EEEeCCCcEEEEc-CCC--eEEEcCCc---CCcccEEEccCCcEEEEeCCCCCCCcccccccccc
Q 018474 94 QSLLGLTTTKDGGV-ILCDNEKGLLKVT-EEG--VEAIVPDA---SFTNDVIAASDGTLYFTVASTKYTPTDFYKDMAEG 166 (355)
Q Consensus 94 ~p~~gl~~d~~g~L-~v~~~~~gl~~~~-~~g--~~~~~~~~---~~~~~l~~d~dG~ly~~d~~~~~~~~~~~~~~~~~ 166 (355)
... +++.+.=|+. +++.+.+-|-+++ +.| .+.+.... ..+.++++|.-+++.++...
T Consensus 450 ~~~-av~vs~CGNF~~IG~S~G~Id~fNmQSGi~r~sf~~~~ah~~~V~gla~D~~n~~~vsa~~--------------- 513 (910)
T KOG1539|consen 450 NAT-AVCVSFCGNFVFIGYSKGTIDRFNMQSGIHRKSFGDSPAHKGEVTGLAVDGTNRLLVSAGA--------------- 513 (910)
T ss_pred ceE-EEEEeccCceEEEeccCCeEEEEEcccCeeecccccCccccCceeEEEecCCCceEEEccC---------------
Confidence 345 6777777775 5555555577888 577 44453222 67889999998888887543
Q ss_pred CCCCeEEEEeCCCCeEEEeeccccccccEEEeCCCCEEEEEeCCCCeEEEEEeCCCCCcceeEecccCCCCcCceEECCC
Q 018474 167 KPYGQLRKYDPKLKETTVLHEGFYFANGIALSKNEDFVVVCESWKFRCRRYWLKGDRAGILDAFIENLPGGPDNINLAPD 246 (355)
Q Consensus 167 ~~~g~l~~~dp~~~~~~~~~~~~~~pngi~~~~dg~~l~v~~~~~~~i~~~~~~~~~~~~~~~~~~~~~g~p~~i~~d~~ 246 (355)
.|-+..||-+++.+..-..-...+.++..+.... ++......-.|..||....+. .+.|- +.......+.+++|
T Consensus 514 --~Gilkfw~f~~k~l~~~l~l~~~~~~iv~hr~s~-l~a~~~ddf~I~vvD~~t~kv--vR~f~-gh~nritd~~FS~D 587 (910)
T KOG1539|consen 514 --DGILKFWDFKKKVLKKSLRLGSSITGIVYHRVSD-LLAIALDDFSIRVVDVVTRKV--VREFW-GHGNRITDMTFSPD 587 (910)
T ss_pred --cceEEEEecCCcceeeeeccCCCcceeeeeehhh-hhhhhcCceeEEEEEchhhhh--hHHhh-ccccceeeeEeCCC
Confidence 4556666765544322122223455666665554 445555567888888643221 22232 23334567889999
Q ss_pred CCEEEEeec
Q 018474 247 GSFWIGLIK 255 (355)
Q Consensus 247 G~lwv~~~~ 255 (355)
|+..++...
T Consensus 588 grWlisasm 596 (910)
T KOG1539|consen 588 GRWLISASM 596 (910)
T ss_pred CcEEEEeec
Confidence 986555543
No 198
>KOG0293 consensus WD40 repeat-containing protein [Function unknown]
Probab=95.31 E-value=0.42 Score=44.28 Aligned_cols=99 Identities=17% Similarity=0.204 Sum_probs=65.2
Q ss_pred CCCCceEEEeeCCCeEEEEecCCEEEEEEcCCCeeEEeeccC-CCcccCeEECCCCC-EEEEeCCCcEEEEcC-CCeEE-
Q 018474 51 VNHPEDVSVVVSKGALYTATRDGWVKYFILHNETLVNWKHID-SQSLLGLTTTKDGG-VILCDNEKGLLKVTE-EGVEA- 126 (355)
Q Consensus 51 ~~~p~~i~~d~~~g~l~~~~~~g~i~~~~~~~g~~~~~~~~~-~~p~~gl~~d~~g~-L~v~~~~~gl~~~~~-~g~~~- 126 (355)
...+.+.++-|++-.+.+|+.++.+..++........|.... ...+ .+++..||. ++..+....+..++. +.+.+
T Consensus 312 ~~S~~sc~W~pDg~~~V~Gs~dr~i~~wdlDgn~~~~W~gvr~~~v~-dlait~Dgk~vl~v~~d~~i~l~~~e~~~dr~ 390 (519)
T KOG0293|consen 312 GFSVSSCAWCPDGFRFVTGSPDRTIIMWDLDGNILGNWEGVRDPKVH-DLAITYDGKYVLLVTVDKKIRLYNREARVDRG 390 (519)
T ss_pred CCCcceeEEccCCceeEecCCCCcEEEecCCcchhhcccccccceeE-EEEEcCCCcEEEEEecccceeeechhhhhhhc
Confidence 468899999988888889999999999998444434443221 2356 788888886 554444556666663 22211
Q ss_pred EcCCcCCcccEEEccCCcEEEEeC
Q 018474 127 IVPDASFTNDVIAASDGTLYFTVA 150 (355)
Q Consensus 127 ~~~~~~~~~~l~~d~dG~ly~~d~ 150 (355)
+......+.++.++.||.+.+.+-
T Consensus 391 lise~~~its~~iS~d~k~~LvnL 414 (519)
T KOG0293|consen 391 LISEEQPITSFSISKDGKLALVNL 414 (519)
T ss_pred cccccCceeEEEEcCCCcEEEEEc
Confidence 222225677888999998877654
No 199
>KOG0310 consensus Conserved WD40 repeat-containing protein [Function unknown]
Probab=95.29 E-value=2.7 Score=39.77 Aligned_cols=140 Identities=14% Similarity=0.181 Sum_probs=77.1
Q ss_pred CcccCeEECCCCCEEEEeCCCcEEEEc--CCC--eEEEcCCcCCcccEEEccCC-cEEEEeCCCCCCCccccccccccCC
Q 018474 94 QSLLGLTTTKDGGVILCDNEKGLLKVT--EEG--VEAIVPDASFTNDVIAASDG-TLYFTVASTKYTPTDFYKDMAEGKP 168 (355)
Q Consensus 94 ~p~~gl~~d~~g~L~v~~~~~gl~~~~--~~g--~~~~~~~~~~~~~l~~d~dG-~ly~~d~~~~~~~~~~~~~~~~~~~ 168 (355)
..+ +..+-.||+|..+....|.+++. ++. +..+.....-++.+-+.+++ +++++.+.
T Consensus 70 ~v~-s~~fR~DG~LlaaGD~sG~V~vfD~k~r~iLR~~~ah~apv~~~~f~~~d~t~l~s~sD----------------- 131 (487)
T KOG0310|consen 70 VVY-SVDFRSDGRLLAAGDESGHVKVFDMKSRVILRQLYAHQAPVHVTKFSPQDNTMLVSGSD----------------- 131 (487)
T ss_pred cee-EEEeecCCeEEEccCCcCcEEEeccccHHHHHHHhhccCceeEEEecccCCeEEEecCC-----------------
Confidence 355 77777899998887666766654 232 33333332334455667655 55554322
Q ss_pred CCeEEEEeCCCCeEEEeecc-ccccccEEEeCCCCEEEEEeCCCCeEEEEEeCCCCCcceeEecccCCCC-cCceEECCC
Q 018474 169 YGQLRKYDPKLKETTVLHEG-FYFANGIALSKNEDFVVVCESWKFRCRRYWLKGDRAGILDAFIENLPGG-PDNINLAPD 246 (355)
Q Consensus 169 ~g~l~~~dp~~~~~~~~~~~-~~~pngi~~~~dg~~l~v~~~~~~~i~~~~~~~~~~~~~~~~~~~~~g~-p~~i~~d~~ 246 (355)
..-+-.||.++..+..-..+ --.-...+++|...+++++....+.|..|+.........+ + + .|. ...+..-+.
T Consensus 132 d~v~k~~d~s~a~v~~~l~~htDYVR~g~~~~~~~hivvtGsYDg~vrl~DtR~~~~~v~e-l--n-hg~pVe~vl~lps 207 (487)
T KOG0310|consen 132 DKVVKYWDLSTAYVQAELSGHTDYVRCGDISPANDHIVVTGSYDGKVRLWDTRSLTSRVVE-L--N-HGCPVESVLALPS 207 (487)
T ss_pred CceEEEEEcCCcEEEEEecCCcceeEeeccccCCCeEEEecCCCceEEEEEeccCCceeEE-e--c-CCCceeeEEEcCC
Confidence 11233345554443211111 1123455677877889999999999999987543211111 1 1 122 345666666
Q ss_pred CCEEEEeec
Q 018474 247 GSFWIGLIK 255 (355)
Q Consensus 247 G~lwv~~~~ 255 (355)
|.+.+++.+
T Consensus 208 gs~iasAgG 216 (487)
T KOG0310|consen 208 GSLIASAGG 216 (487)
T ss_pred CCEEEEcCC
Confidence 777777655
No 200
>COG1520 FOG: WD40-like repeat [Function unknown]
Probab=95.23 E-value=2.7 Score=39.43 Aligned_cols=99 Identities=15% Similarity=0.096 Sum_probs=57.4
Q ss_pred ECCCCCEEEEeCCCcEEEEcC-CCeEEEcCC----cCCcccEEEccCCcEEEEeCCCCCCCccccccccccCCCCeEEEE
Q 018474 101 TTKDGGVILCDNEKGLLKVTE-EGVEAIVPD----ASFTNDVIAASDGTLYFTVASTKYTPTDFYKDMAEGKPYGQLRKY 175 (355)
Q Consensus 101 ~d~~g~L~v~~~~~gl~~~~~-~g~~~~~~~----~~~~~~l~~d~dG~ly~~d~~~~~~~~~~~~~~~~~~~~g~l~~~ 175 (355)
.+.+|++|++...+.++.++. ++....... ....+.-....+|+||+++.. +.+|++
T Consensus 65 ~~~dg~v~~~~~~G~i~A~d~~~g~~~W~~~~~~~~~~~~~~~~~~~G~i~~g~~~------------------g~~y~l 126 (370)
T COG1520 65 ADGDGTVYVGTRDGNIFALNPDTGLVKWSYPLLGAVAQLSGPILGSDGKIYVGSWD------------------GKLYAL 126 (370)
T ss_pred EeeCCeEEEecCCCcEEEEeCCCCcEEecccCcCcceeccCceEEeCCeEEEeccc------------------ceEEEE
Confidence 567899999865656899985 552222111 123444444458999998654 368999
Q ss_pred eCCCCeEEEeecccc---ccccEEEeCCCCEEEEEeCCCCeEEEEEeC
Q 018474 176 DPKLKETTVLHEGFY---FANGIALSKNEDFVVVCESWKFRCRRYWLK 220 (355)
Q Consensus 176 dp~~~~~~~~~~~~~---~pngi~~~~dg~~l~v~~~~~~~i~~~~~~ 220 (355)
|+++|+......... ... -++-.|+. +|+.. ..+.+++++.+
T Consensus 127 d~~~G~~~W~~~~~~~~~~~~-~~v~~~~~-v~~~s-~~g~~~al~~~ 171 (370)
T COG1520 127 DASTGTLVWSRNVGGSPYYAS-PPVVGDGT-VYVGT-DDGHLYALNAD 171 (370)
T ss_pred ECCCCcEEEEEecCCCeEEec-CcEEcCcE-EEEec-CCCeEEEEEcc
Confidence 987776654432222 111 12333443 55543 45677777765
No 201
>KOG0284 consensus Polyadenylation factor I complex, subunit PFS2 [RNA processing and modification]
Probab=95.21 E-value=0.21 Score=46.00 Aligned_cols=147 Identities=12% Similarity=0.159 Sum_probs=88.9
Q ss_pred ceEEEeeCCCeEEEEecCCEEEEEEcCCCeeEEeeccCCCcccCeEECCCCCEEEEeCCCcEEEEc-CC-C-eEEEcCC-
Q 018474 55 EDVSVVVSKGALYTATRDGWVKYFILHNETLVNWKHIDSQSLLGLTTTKDGGVILCDNEKGLLKVT-EE-G-VEAIVPD- 130 (355)
Q Consensus 55 ~~i~~d~~~g~l~~~~~~g~i~~~~~~~g~~~~~~~~~~~p~~gl~~d~~g~L~v~~~~~gl~~~~-~~-g-~~~~~~~- 130 (355)
..+.+.|++++|.+++..|..-.++...=.++.+...-..|.++|.+..+|+-.|....+|.++|- ++ . ++.+...
T Consensus 100 ~~v~WtPeGRRLltgs~SGEFtLWNg~~fnFEtilQaHDs~Vr~m~ws~~g~wmiSgD~gG~iKyWqpnmnnVk~~~ahh 179 (464)
T KOG0284|consen 100 NVVRWTPEGRRLLTGSQSGEFTLWNGTSFNFETILQAHDSPVRTMKWSHNGTWMISGDKGGMIKYWQPNMNNVKIIQAHH 179 (464)
T ss_pred eeEEEcCCCceeEeecccccEEEecCceeeHHHHhhhhcccceeEEEccCCCEEEEcCCCceEEecccchhhhHHhhHhh
Confidence 356677778889999988887777541111111111112333388888888877766667888887 32 2 4433222
Q ss_pred cCCcccEEEccCCcEEEEeCCCCCCCccccccccccCCCCeEEEEeCCCC-eEEEeeccccccccEEEeCCCCEEEEEeC
Q 018474 131 ASFTNDVIAASDGTLYFTVASTKYTPTDFYKDMAEGKPYGQLRKYDPKLK-ETTVLHEGFYFANGIALSKNEDFVVVCES 209 (355)
Q Consensus 131 ~~~~~~l~~d~dG~ly~~d~~~~~~~~~~~~~~~~~~~~g~l~~~dp~~~-~~~~~~~~~~~pngi~~~~dg~~l~v~~~ 209 (355)
...+.+++++|+...|++-+. .|.+..||-.-. +-+++.....-+..+..+|... ++++..
T Consensus 180 ~eaIRdlafSpnDskF~t~Sd-----------------Dg~ikiWdf~~~kee~vL~GHgwdVksvdWHP~kg-Liasgs 241 (464)
T KOG0284|consen 180 AEAIRDLAFSPNDSKFLTCSD-----------------DGTIKIWDFRMPKEERVLRGHGWDVKSVDWHPTKG-LIASGS 241 (464)
T ss_pred hhhhheeccCCCCceeEEecC-----------------CCeEEEEeccCCchhheeccCCCCcceeccCCccc-eeEEcc
Confidence 267899999998888887554 455666664322 2223333334567788999765 777776
Q ss_pred CCCeEEEEEe
Q 018474 210 WKFRCRRYWL 219 (355)
Q Consensus 210 ~~~~i~~~~~ 219 (355)
..+-|..+|.
T Consensus 242 kDnlVKlWDp 251 (464)
T KOG0284|consen 242 KDNLVKLWDP 251 (464)
T ss_pred CCceeEeecC
Confidence 6664444454
No 202
>PF07494 Reg_prop: Two component regulator propeller; InterPro: IPR011110 A large group of two component regulator proteins appear to have the same N-terminal structure of 14 tandem repeats. These repeats show homology to members of IPR002372 from INTERPRO and IPR001680 from INTERPRO indicating that they are likely to form a beta-propeller. This family has been built with artificially high cut-offs in order to avoid overlaps with other beta-propeller families. The fourteen repeats are likely to form two propellers; it is not clear if these structures are likely to recruit other proteins or interact with DNA.; PDB: 3V9F_D 3VA6_B 3OTT_B 4A2M_D 4A2L_B.
Probab=95.20 E-value=0.026 Score=30.17 Aligned_cols=16 Identities=38% Similarity=0.729 Sum_probs=12.5
Q ss_pred CceEECCCCCEEEEee
Q 018474 239 DNINLAPDGSFWIGLI 254 (355)
Q Consensus 239 ~~i~~d~~G~lwv~~~ 254 (355)
..+..|++|++|+++.
T Consensus 8 ~~i~~D~~G~lWigT~ 23 (24)
T PF07494_consen 8 YSIYEDSDGNLWIGTY 23 (24)
T ss_dssp EEEEE-TTSCEEEEET
T ss_pred EEEEEcCCcCEEEEeC
Confidence 3477899999999985
No 203
>KOG0283 consensus WD40 repeat-containing protein [Function unknown]
Probab=95.16 E-value=2.4 Score=42.52 Aligned_cols=184 Identities=15% Similarity=0.110 Sum_probs=104.6
Q ss_pred CCCCCCceEEEeeCCCeEEEEecCCEEEEEEcCCCe-eEEeeccCCCcccCeEECC-CCCEEEEeCCCcEEEEc--CCC-
Q 018474 49 GCVNHPEDVSVVVSKGALYTATRDGWVKYFILHNET-LVNWKHIDSQSLLGLTTTK-DGGVILCDNEKGLLKVT--EEG- 123 (355)
Q Consensus 49 ~~~~~p~~i~~d~~~g~l~~~~~~g~i~~~~~~~g~-~~~~~~~~~~p~~gl~~d~-~g~L~v~~~~~gl~~~~--~~g- 123 (355)
|....--+|.|. +++.|..++.|..+..+++.... +..|.+ ..... +++|.| |.+.|+...-+|-+|+. ++.
T Consensus 367 GHt~DILDlSWS-Kn~fLLSSSMDKTVRLWh~~~~~CL~~F~H-ndfVT-cVaFnPvDDryFiSGSLD~KvRiWsI~d~~ 443 (712)
T KOG0283|consen 367 GHTADILDLSWS-KNNFLLSSSMDKTVRLWHPGRKECLKVFSH-NDFVT-CVAFNPVDDRYFISGSLDGKVRLWSISDKK 443 (712)
T ss_pred ccchhheecccc-cCCeeEeccccccEEeecCCCcceeeEEec-CCeeE-EEEecccCCCcEeecccccceEEeecCcCe
Confidence 333444567787 78888889999999999886554 444444 34566 888885 55777776666766665 333
Q ss_pred eEEEcCCcCCcccEEEccCCcEEEEeCCCCCCCccccccccccCCCCeEEEEeCCCCeEEEee----cc-----cccccc
Q 018474 124 VEAIVPDASFTNDVIAASDGTLYFTVASTKYTPTDFYKDMAEGKPYGQLRKYDPKLKETTVLH----EG-----FYFANG 194 (355)
Q Consensus 124 ~~~~~~~~~~~~~l~~d~dG~ly~~d~~~~~~~~~~~~~~~~~~~~g~l~~~dp~~~~~~~~~----~~-----~~~png 194 (355)
+....+-...+..++..|||..-+.. +-.|....|+....++..-. .. .....|
T Consensus 444 Vv~W~Dl~~lITAvcy~PdGk~avIG-----------------t~~G~C~fY~t~~lk~~~~~~I~~~~~Kk~~~~rITG 506 (712)
T KOG0283|consen 444 VVDWNDLRDLITAVCYSPDGKGAVIG-----------------TFNGYCRFYDTEGLKLVSDFHIRLHNKKKKQGKRITG 506 (712)
T ss_pred eEeehhhhhhheeEEeccCCceEEEE-----------------EeccEEEEEEccCCeEEEeeeEeeccCccccCceeee
Confidence 33333222678889999999654432 22455556665544443211 00 113456
Q ss_pred EEEeCCCC-EEEEEeCCCCeEEEEEeCCCC-CcceeEecccCCCCcCceEECCCCCEEEEeec
Q 018474 195 IALSKNED-FVVVCESWKFRCRRYWLKGDR-AGILDAFIENLPGGPDNINLAPDGSFWIGLIK 255 (355)
Q Consensus 195 i~~~~dg~-~l~v~~~~~~~i~~~~~~~~~-~~~~~~~~~~~~g~p~~i~~d~~G~lwv~~~~ 255 (355)
+.+.|... .++|+. ...+|..|+..... +.+++-+. +..+ ..--.++.||++.|....
T Consensus 507 ~Q~~p~~~~~vLVTS-nDSrIRI~d~~~~~lv~KfKG~~-n~~S-Q~~Asfs~Dgk~IVs~se 566 (712)
T KOG0283|consen 507 LQFFPGDPDEVLVTS-NDSRIRIYDGRDKDLVHKFKGFR-NTSS-QISASFSSDGKHIVSASE 566 (712)
T ss_pred eEecCCCCCeEEEec-CCCceEEEeccchhhhhhhcccc-cCCc-ceeeeEccCCCEEEEeec
Confidence 66665333 366664 56899999974322 11111111 1111 111235667877776654
No 204
>PF06433 Me-amine-dh_H: Methylamine dehydrogenase heavy chain (MADH); InterPro: IPR009451 Methylamine dehydrogenase (1.4.99.3 from EC) is a periplasmic quinoprotein found in several methyltrophic bacteria []. It is induced when grown on methylamine as a carbon source MADH and catalyses the oxidative deamination of amines to their corresponding aldehydes. The redox cofactor of this enzyme is tryptophan tryptophylquinone (TTQ). Electrons derived from the oxidation of methylamine are passed to an electron acceptor, which is usually the blue-copper protein amicyanin (IPR002386 from INTERPRO). RCH2NH2 + H2O + acceptor = RCHO + NH3 + reduced acceptor MADH is a hetero-tetramer, comprised of two heavy subunits and two light subunits. The heavy subunit forms a seven-bladed beta-propeller like structure [].; GO: 0030058 amine dehydrogenase activity, 0030416 methylamine metabolic process, 0055114 oxidation-reduction process, 0042597 periplasmic space; PDB: 3RN1_F 3SVW_F 3PXT_F 3L4O_F 3L4M_D 3SJL_F 3PXS_D 3ORV_F 3RMZ_F 3RLM_F ....
Probab=95.10 E-value=0.57 Score=42.88 Aligned_cols=112 Identities=18% Similarity=0.180 Sum_probs=65.8
Q ss_pred CCCeEEEEecCCEEEEEEcCCCeeE---Eeecc------CC-Cccc--CeEEC-CCCCEEEEeCC----------CcEEE
Q 018474 62 SKGALYTATRDGWVKYFILHNETLV---NWKHI------DS-QSLL--GLTTT-KDGGVILCDNE----------KGLLK 118 (355)
Q Consensus 62 ~~g~l~~~~~~g~i~~~~~~~g~~~---~~~~~------~~-~p~~--gl~~d-~~g~L~v~~~~----------~gl~~ 118 (355)
.++.+|.-+.+|.|+.++......+ .|... .+ +|-. -++++ +.++|||..+. ..++.
T Consensus 194 ~~~~~~F~Sy~G~v~~~dlsg~~~~~~~~~~~~t~~e~~~~WrPGG~Q~~A~~~~~~rlyvLMh~g~~gsHKdpgteVWv 273 (342)
T PF06433_consen 194 DGGRLYFVSYEGNVYSADLSGDSAKFGKPWSLLTDAEKADGWRPGGWQLIAYHAASGRLYVLMHQGGEGSHKDPGTEVWV 273 (342)
T ss_dssp TTTEEEEEBTTSEEEEEEETTSSEEEEEEEESS-HHHHHTTEEE-SSS-EEEETTTTEEEEEEEE--TT-TTS-EEEEEE
T ss_pred CCCeEEEEecCCEEEEEeccCCcccccCcccccCccccccCcCCcceeeeeeccccCeEEEEecCCCCCCccCCceEEEE
Confidence 5667888889999999998544322 22110 11 2320 25665 57899996532 13888
Q ss_pred Ec-CCC--eEEEcCCcCCcccEEEccCC--cEEEEeCCCCCCCccccccccccCCCCeEEEEeCCCCeEEEeeccccc
Q 018474 119 VT-EEG--VEAIVPDASFTNDVIAASDG--TLYFTVASTKYTPTDFYKDMAEGKPYGQLRKYDPKLKETTVLHEGFYF 191 (355)
Q Consensus 119 ~~-~~g--~~~~~~~~~~~~~l~~d~dG--~ly~~d~~~~~~~~~~~~~~~~~~~~g~l~~~dp~~~~~~~~~~~~~~ 191 (355)
+| +++ +.++.-. ..+.+|.++.+. .||..+.. .+.|+.||+.+|+...-..++..
T Consensus 274 ~D~~t~krv~Ri~l~-~~~~Si~Vsqd~~P~L~~~~~~-----------------~~~l~v~D~~tGk~~~~~~~lG~ 333 (342)
T PF06433_consen 274 YDLKTHKRVARIPLE-HPIDSIAVSQDDKPLLYALSAG-----------------DGTLDVYDAATGKLVRSIEQLGE 333 (342)
T ss_dssp EETTTTEEEEEEEEE-EEESEEEEESSSS-EEEEEETT-----------------TTEEEEEETTT--EEEEE---SS
T ss_pred EECCCCeEEEEEeCC-CccceEEEccCCCcEEEEEcCC-----------------CCeEEEEeCcCCcEEeehhccCC
Confidence 88 466 5544432 346688888766 46655443 56899999999987665555543
No 205
>KOG0268 consensus Sof1-like rRNA processing protein (contains WD40 repeats) [RNA processing and modification]
Probab=95.07 E-value=0.96 Score=41.30 Aligned_cols=182 Identities=14% Similarity=0.154 Sum_probs=91.7
Q ss_pred CCCCCCCceEEEeeCC-CeEEEEecCCEEEEEEcCCCee-EEeeccCCCcccCeEECCCCCEEEEeCCCcEEEEcCCC--
Q 018474 48 EGCVNHPEDVSVVVSK-GALYTATRDGWVKYFILHNETL-VNWKHIDSQSLLGLTTTKDGGVILCDNEKGLLKVTEEG-- 123 (355)
Q Consensus 48 ~~~~~~p~~i~~d~~~-g~l~~~~~~g~i~~~~~~~g~~-~~~~~~~~~p~~gl~~d~~g~L~v~~~~~gl~~~~~~g-- 123 (355)
.|.-.|-.+++-+|.. ..+..|+.||.|..+|..+... ..+.-..+... ||.++....+++++.. .+-.+.-+|
T Consensus 63 ~gHrdGV~~lakhp~~ls~~aSGs~DG~VkiWnlsqR~~~~~f~AH~G~V~-Gi~v~~~~~~tvgdDK-tvK~wk~~~~p 140 (433)
T KOG0268|consen 63 DGHRDGVSCLAKHPNKLSTVASGSCDGEVKIWNLSQRECIRTFKAHEGLVR-GICVTQTSFFTVGDDK-TVKQWKIDGPP 140 (433)
T ss_pred cccccccchhhcCcchhhhhhccccCceEEEEehhhhhhhheeecccCcee-eEEecccceEEecCCc-ceeeeeccCCc
Confidence 4556677788888544 4577788899999999855432 22222335577 9999875556666532 222221133
Q ss_pred eEEEcCCcCCcccEEEccCCcEEEEeCCCCCCCccccccccccCCCCeEEEEeCCCC-eEEEeeccccccccEEEeCCCC
Q 018474 124 VEAIVPDASFTNDVIAASDGTLYFTVASTKYTPTDFYKDMAEGKPYGQLRKYDPKLK-ETTVLHEGFYFANGIALSKNED 202 (355)
Q Consensus 124 ~~~~~~~~~~~~~l~~d~dG~ly~~d~~~~~~~~~~~~~~~~~~~~g~l~~~dp~~~-~~~~~~~~~~~pngi~~~~dg~ 202 (355)
++++... ....++.-...+.++.|. ...+-.||+.-. -++.+.-+.-.-..+.+.|-+-
T Consensus 141 ~~tilg~-s~~~gIdh~~~~~~FaTc-------------------Ge~i~IWD~~R~~Pv~smswG~Dti~svkfNpvET 200 (433)
T KOG0268|consen 141 LHTILGK-SVYLGIDHHRKNSVFATC-------------------GEQIDIWDEQRDNPVSSMSWGADSISSVKFNPVET 200 (433)
T ss_pred ceeeecc-cccccccccccccccccc-------------------CceeeecccccCCccceeecCCCceeEEecCCCcc
Confidence 3333222 112222211222232221 112334443211 1111111111113455666666
Q ss_pred EEEEEeCCCCeEEEEEeCCCCCcceeEecccCCCCcCceEECCCCCEEEEeec
Q 018474 203 FVVVCESWKFRCRRYWLKGDRAGILDAFIENLPGGPDNINLAPDGSFWIGLIK 255 (355)
Q Consensus 203 ~l~v~~~~~~~i~~~~~~~~~~~~~~~~~~~~~g~p~~i~~d~~G~lwv~~~~ 255 (355)
.++.+......|..||...... .+... +...++.|+..+++-.+++...
T Consensus 201 sILas~~sDrsIvLyD~R~~~P--l~KVi--~~mRTN~IswnPeafnF~~a~E 249 (433)
T KOG0268|consen 201 SILASCASDRSIVLYDLRQASP--LKKVI--LTMRTNTICWNPEAFNFVAANE 249 (433)
T ss_pred hheeeeccCCceEEEecccCCc--cceee--eeccccceecCccccceeeccc
Confidence 5666665667899999754321 11221 1123677888887766666554
No 206
>KOG0292 consensus Vesicle coat complex COPI, alpha subunit [Intracellular trafficking, secretion, and vesicular transport]
Probab=95.03 E-value=4.9 Score=41.27 Aligned_cols=251 Identities=13% Similarity=0.158 Sum_probs=130.5
Q ss_pred CCceEEEeeCCCeEEEEecCCEEEEEEcCCCee-EEeeccCCCcccCeEECCCCCEEEEeCCCcEEEEc--CCC--eEEE
Q 018474 53 HPEDVSVVVSKGALYTATRDGWVKYFILHNETL-VNWKHIDSQSLLGLTTTKDGGVILCDNEKGLLKVT--EEG--VEAI 127 (355)
Q Consensus 53 ~p~~i~~d~~~g~l~~~~~~g~i~~~~~~~g~~-~~~~~~~~~p~~gl~~d~~g~L~v~~~~~gl~~~~--~~g--~~~~ 127 (355)
..-++.++|..-.+.++..+|.|..+|-.=+.. .+|....+... |+.+.+.+-|||....+-.+++. ++. +-++
T Consensus 11 RvKglsFHP~rPwILtslHsG~IQlWDYRM~tli~rFdeHdGpVR-gv~FH~~qplFVSGGDDykIkVWnYk~rrclftL 89 (1202)
T KOG0292|consen 11 RVKGLSFHPKRPWILTSLHSGVIQLWDYRMGTLIDRFDEHDGPVR-GVDFHPTQPLFVSGGDDYKIKVWNYKTRRCLFTL 89 (1202)
T ss_pred cccceecCCCCCEEEEeecCceeeeehhhhhhHHhhhhccCCccc-eeeecCCCCeEEecCCccEEEEEecccceehhhh
Confidence 445678887666666777899888887544432 23333345566 99999999999986544344443 332 3333
Q ss_pred cCCcCCcccEEEccCCcEEEEeCCCCCCCccccccccccCCCCeEEEEeCCCCeEEEeecc-ccccccEEEeCCCCEEEE
Q 018474 128 VPDASFTNDVIAASDGTLYFTVASTKYTPTDFYKDMAEGKPYGQLRKYDPKLKETTVLHEG-FYFANGIALSKNEDFVVV 206 (355)
Q Consensus 128 ~~~~~~~~~l~~d~dG~ly~~d~~~~~~~~~~~~~~~~~~~~g~l~~~dp~~~~~~~~~~~-~~~pngi~~~~dg~~l~v 206 (355)
......++.+.+.+. .=|+-..+ ....+..||=.+++-....++ -.+--...|+|.+. +++
T Consensus 90 ~GHlDYVRt~~FHhe-yPWIlSAS----------------DDQTIrIWNwqsr~~iavltGHnHYVMcAqFhptED-lIV 151 (1202)
T KOG0292|consen 90 LGHLDYVRTVFFHHE-YPWILSAS----------------DDQTIRIWNWQSRKCIAVLTGHNHYVMCAQFHPTED-LIV 151 (1202)
T ss_pred ccccceeEEeeccCC-CceEEEcc----------------CCCeEEEEeccCCceEEEEecCceEEEeeccCCccc-eEE
Confidence 333345555555432 12332221 122344444334433222323 23333456888776 888
Q ss_pred EeCCCCeEEEEEeCCCCCcceeE--ecc---------cCCCCcCceE---EC--CCCCEEEEeecCCchhhHhhhcchhH
Q 018474 207 CESWKFRCRRYWLKGDRAGILDA--FIE---------NLPGGPDNIN---LA--PDGSFWIGLIKMNQTGVRAIQKCREK 270 (355)
Q Consensus 207 ~~~~~~~i~~~~~~~~~~~~~~~--~~~---------~~~g~p~~i~---~d--~~G~lwv~~~~~~~~~~~~~~~~~~~ 270 (355)
+.+....|.++|++|-+.++... +-+ .+-|.+|-++ .+ ..|-=|++-+.-..-
T Consensus 152 SaSLDQTVRVWDisGLRkk~~~pg~~e~~~~~~~~~~dLfg~~DaVVK~VLEGHDRGVNwaAfhpTlpl----------- 220 (1202)
T KOG0292|consen 152 SASLDQTVRVWDISGLRKKNKAPGSLEDQMRGQQGNSDLFGQTDAVVKHVLEGHDRGVNWAAFHPTLPL----------- 220 (1202)
T ss_pred EecccceEEEEeecchhccCCCCCCchhhhhccccchhhcCCcCeeeeeeecccccccceEEecCCcce-----------
Confidence 88899999999998743322110 000 1112234332 11 124346655431000
Q ss_pred HHHHHhccchhhcccCCCCCCceEEEEEeCCCCeEEEEEECCCCCcccceeEEEEeC-CEEEEeecCCCeEEEeeCCCCC
Q 018474 271 WELLDAYPGLISLLLPMGSDAGARVVKVDGNDGKIIRDFNDPDATYISFVTSAAEFD-GNLYLASLQSNFIGILPLDGPE 349 (355)
Q Consensus 271 ~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~g~~~~~~~~~~g~~~~~~~~~~~~~-g~L~v~~~~~~~i~~~~~~~~~ 349 (355)
+..-.++..--+++++. +..+.. ..-.|. .++++++.++. -+|-+++.....|.+.++..++
T Consensus 221 -------------iVSG~DDRqVKlWrmne-tKaWEv--DtcrgH-~nnVssvlfhp~q~lIlSnsEDksirVwDm~kRt 283 (1202)
T KOG0292|consen 221 -------------IVSGADDRQVKLWRMNE-TKAWEV--DTCRGH-YNNVSSVLFHPHQDLILSNSEDKSIRVWDMTKRT 283 (1202)
T ss_pred -------------EEecCCcceeeEEEecc-ccceee--hhhhcc-cCCcceEEecCccceeEecCCCccEEEEeccccc
Confidence 00000122234566665 322211 111232 55677777776 4577777777888888877765
Q ss_pred C
Q 018474 350 P 350 (355)
Q Consensus 350 ~ 350 (355)
+
T Consensus 284 ~ 284 (1202)
T KOG0292|consen 284 S 284 (1202)
T ss_pred c
Confidence 4
No 207
>KOG4441 consensus Proteins containing BTB/POZ and Kelch domains, involved in regulatory/signal transduction processes [Signal transduction mechanisms; General function prediction only]
Probab=94.97 E-value=4 Score=40.76 Aligned_cols=205 Identities=12% Similarity=0.124 Sum_probs=107.3
Q ss_pred CEEEEEEcCCCeeEEeeccC-CC-cccCeEECCCCCEEEEeCCC-c------EEEEcC-CC-eEEEcCCcCCcccEEE-c
Q 018474 73 GWVKYFILHNETLVNWKHID-SQ-SLLGLTTTKDGGVILCDNEK-G------LLKVTE-EG-VEAIVPDASFTNDVIA-A 140 (355)
Q Consensus 73 g~i~~~~~~~g~~~~~~~~~-~~-p~~gl~~d~~g~L~v~~~~~-g------l~~~~~-~g-~~~~~~~~~~~~~l~~-d 140 (355)
..+..+|+.++++...+... .+ -. +++.- +|.||++...+ | +.+||+ ++ -+.++.-...=.++.+ .
T Consensus 301 ~~ve~yd~~~~~w~~~a~m~~~r~~~-~~~~~-~~~lYv~GG~~~~~~~l~~ve~YD~~~~~W~~~a~M~~~R~~~~v~~ 378 (571)
T KOG4441|consen 301 RSVECYDPKTNEWSSLAPMPSPRCRV-GVAVL-NGKLYVVGGYDSGSDRLSSVERYDPRTNQWTPVAPMNTKRSDFGVAV 378 (571)
T ss_pred ceeEEecCCcCcEeecCCCCcccccc-cEEEE-CCEEEEEccccCCCcccceEEEecCCCCceeccCCccCccccceeEE
Confidence 45678899888887765432 12 23 55553 67899875444 2 667774 33 3333322111111222 2
Q ss_pred cCCcEEEEeCCCCCCCccccccccccCCCCeEEEEeCCCCeEEEeeccccc--cccEEEeCCCCEEEEEeC------CCC
Q 018474 141 SDGTLYFTVASTKYTPTDFYKDMAEGKPYGQLRKYDPKLKETTVLHEGFYF--ANGIALSKNEDFVVVCES------WKF 212 (355)
Q Consensus 141 ~dG~ly~~d~~~~~~~~~~~~~~~~~~~~g~l~~~dp~~~~~~~~~~~~~~--pngi~~~~dg~~l~v~~~------~~~ 212 (355)
=+|.||+..... .......+-+|||.+.+++.+..-... ..|++. -+| .+|++.- .-.
T Consensus 379 l~g~iYavGG~d------------g~~~l~svE~YDp~~~~W~~va~m~~~r~~~gv~~-~~g-~iYi~GG~~~~~~~l~ 444 (571)
T KOG4441|consen 379 LDGKLYAVGGFD------------GEKSLNSVECYDPVTNKWTPVAPMLTRRSGHGVAV-LGG-KLYIIGGGDGSSNCLN 444 (571)
T ss_pred ECCEEEEEeccc------------cccccccEEEecCCCCcccccCCCCcceeeeEEEE-ECC-EEEEEcCcCCCccccc
Confidence 378898764431 001133689999999999877644322 223332 244 4888764 124
Q ss_pred eEEEEEeCCCCCcceeEecccCCC--CcCceEECCCCCEEEEeecCCchhhHhhhcchhHHHHHHhccchhhcccCCCCC
Q 018474 213 RCRRYWLKGDRAGILDAFIENLPG--GPDNINLAPDGSFWIGLIKMNQTGVRAIQKCREKWELLDAYPGLISLLLPMGSD 290 (355)
Q Consensus 213 ~i~~~~~~~~~~~~~~~~~~~~~g--~p~~i~~d~~G~lwv~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 290 (355)
.+.+||+..+ ..+... .++. .--+++.- +|.||+...-... .
T Consensus 445 sve~YDP~t~---~W~~~~-~M~~~R~~~g~a~~-~~~iYvvGG~~~~-------------------------------~ 488 (571)
T KOG4441|consen 445 SVECYDPETN---TWTLIA-PMNTRRSGFGVAVL-NGKIYVVGGFDGT-------------------------------S 488 (571)
T ss_pred eEEEEcCCCC---ceeecC-CcccccccceEEEE-CCEEEEECCccCC-------------------------------C
Confidence 5778887542 232222 1111 11234443 4678876543211 1
Q ss_pred CceEEEEEeCCCCeEEEEEEC-CCCCcccceeEEEEeCCEEEEe
Q 018474 291 AGARVVKVDGNDGKIIRDFND-PDATYISFVTSAAEFDGNLYLA 333 (355)
Q Consensus 291 ~~~~v~~~~~~~g~~~~~~~~-~~g~~~~~~~~~~~~~g~L~v~ 333 (355)
....|-+||| ....-..... ... ....+++..+++||+.
T Consensus 489 ~~~~VE~ydp-~~~~W~~v~~m~~~---rs~~g~~~~~~~ly~v 528 (571)
T KOG4441|consen 489 ALSSVERYDP-ETNQWTMVAPMTSP---RSAVGVVVLGGKLYAV 528 (571)
T ss_pred ccceEEEEcC-CCCceeEcccCccc---cccccEEEECCEEEEE
Confidence 1134889999 4443343332 111 1333566778888884
No 208
>PF14269 Arylsulfotran_2: Arylsulfotransferase (ASST)
Probab=94.89 E-value=2.9 Score=38.02 Aligned_cols=39 Identities=18% Similarity=0.154 Sum_probs=28.7
Q ss_pred CCcccEEEccCCcEEEEeCCCCCCCccccccccccCCCCeEEEEeCCCCeEEEeec
Q 018474 132 SFTNDVIAASDGTLYFTVASTKYTPTDFYKDMAEGKPYGQLRKYDPKLKETTVLHE 187 (355)
Q Consensus 132 ~~~~~l~~d~dG~ly~~d~~~~~~~~~~~~~~~~~~~~g~l~~~dp~~~~~~~~~~ 187 (355)
..+|++..+++|.+.++... ...|+++|+++|++.....
T Consensus 144 ~HiNsV~~~~~G~yLiS~R~-----------------~~~i~~I~~~tG~I~W~lg 182 (299)
T PF14269_consen 144 FHINSVDKDDDGDYLISSRN-----------------TSTIYKIDPSTGKIIWRLG 182 (299)
T ss_pred cEeeeeeecCCccEEEEecc-----------------cCEEEEEECCCCcEEEEeC
Confidence 67788888888887776543 4478889988888766543
No 209
>KOG3881 consensus Uncharacterized conserved protein [Function unknown]
Probab=94.84 E-value=2.8 Score=38.70 Aligned_cols=94 Identities=17% Similarity=0.191 Sum_probs=61.0
Q ss_pred ccccccCCCCeEEEEeCCCCeEEEeeccc--cccccEEEeCCCCEEEEEeCCCCeEEEEEeCCCCCcceeEecccCCCCc
Q 018474 161 KDMAEGKPYGQLRKYDPKLKETTVLHEGF--YFANGIALSKNEDFVVVCESWKFRCRRYWLKGDRAGILDAFIENLPGGP 238 (355)
Q Consensus 161 ~~~~~~~~~g~l~~~dp~~~~~~~~~~~~--~~pngi~~~~dg~~l~v~~~~~~~i~~~~~~~~~~~~~~~~~~~~~g~p 238 (355)
+.+...+..+.+-.||+..++.-+..-.+ ..-..+++.|+++++|++++ .+.+..||.++.+.... +..+..|-+
T Consensus 217 ~~fat~T~~hqvR~YDt~~qRRPV~~fd~~E~~is~~~l~p~gn~Iy~gn~-~g~l~~FD~r~~kl~g~--~~kg~tGsi 293 (412)
T KOG3881|consen 217 YKFATITRYHQVRLYDTRHQRRPVAQFDFLENPISSTGLTPSGNFIYTGNT-KGQLAKFDLRGGKLLGC--GLKGITGSI 293 (412)
T ss_pred ceEEEEecceeEEEecCcccCcceeEeccccCcceeeeecCCCcEEEEecc-cchhheecccCceeecc--ccCCccCCc
Confidence 33444566678889999755433222111 11235678999999999886 57899999876543221 223455678
Q ss_pred CceEECCCCCEEEEeecCC
Q 018474 239 DNINLAPDGSFWIGLIKMN 257 (355)
Q Consensus 239 ~~i~~d~~G~lwv~~~~~~ 257 (355)
+.+...+.+.+..++.-.|
T Consensus 294 rsih~hp~~~~las~GLDR 312 (412)
T KOG3881|consen 294 RSIHCHPTHPVLASCGLDR 312 (412)
T ss_pred ceEEEcCCCceEEeeccce
Confidence 8899988777877776544
No 210
>PHA02790 Kelch-like protein; Provisional
Probab=94.77 E-value=4.4 Score=39.55 Aligned_cols=168 Identities=5% Similarity=-0.051 Sum_probs=87.8
Q ss_pred CCeEEEEe-cC-----CEEEEEEcCCCeeEEeeccC-CCcccCeEECCCCCEEEEeCC---CcEEEEcC-CC-eEEEcCC
Q 018474 63 KGALYTAT-RD-----GWVKYFILHNETLVNWKHID-SQSLLGLTTTKDGGVILCDNE---KGLLKVTE-EG-VEAIVPD 130 (355)
Q Consensus 63 ~g~l~~~~-~~-----g~i~~~~~~~g~~~~~~~~~-~~p~~gl~~d~~g~L~v~~~~---~gl~~~~~-~g-~~~~~~~ 130 (355)
++.+|+.. .+ ..+.++|+.++++....... .+...+.+. -+|.||+.... ..+.++++ ++ .+.++.-
T Consensus 271 ~~~lyviGG~~~~~~~~~v~~Ydp~~~~W~~~~~m~~~r~~~~~v~-~~~~iYviGG~~~~~sve~ydp~~n~W~~~~~l 349 (480)
T PHA02790 271 GEVVYLIGGWMNNEIHNNAIAVNYISNNWIPIPPMNSPRLYASGVP-ANNKLYVVGGLPNPTSVERWFHGDAAWVNMPSL 349 (480)
T ss_pred CCEEEEEcCCCCCCcCCeEEEEECCCCEEEECCCCCchhhcceEEE-ECCEEEEECCcCCCCceEEEECCCCeEEECCCC
Confidence 55677632 21 35789999888887765332 121102332 47899987532 23667774 44 4443332
Q ss_pred c-CCcccEEEccCCcEEEEeCCCCCCCccccccccccCCCCeEEEEeCCCCeEEEeeccc-cccccEEEeCCCCEEEEEe
Q 018474 131 A-SFTNDVIAASDGTLYFTVASTKYTPTDFYKDMAEGKPYGQLRKYDPKLKETTVLHEGF-YFANGIALSKNEDFVVVCE 208 (355)
Q Consensus 131 ~-~~~~~l~~d~dG~ly~~d~~~~~~~~~~~~~~~~~~~~g~l~~~dp~~~~~~~~~~~~-~~pngi~~~~dg~~l~v~~ 208 (355)
. ..-...++.-+|.||+..... .. ...+.+|||++++++....-. ......+..-++ .+|+..
T Consensus 350 ~~~r~~~~~~~~~g~IYviGG~~-------------~~-~~~ve~ydp~~~~W~~~~~m~~~r~~~~~~~~~~-~IYv~G 414 (480)
T PHA02790 350 LKPRCNPAVASINNVIYVIGGHS-------------ET-DTTTEYLLPNHDQWQFGPSTYYPHYKSCALVFGR-RLFLVG 414 (480)
T ss_pred CCCCcccEEEEECCEEEEecCcC-------------CC-CccEEEEeCCCCEEEeCCCCCCccccceEEEECC-EEEEEC
Confidence 2 111223344578999874321 00 135778999999998654321 111122223455 488875
Q ss_pred CCCCeEEEEEeCCCCCcceeEecccCCC--CcCceEECCCCCEEEEee
Q 018474 209 SWKFRCRRYWLKGDRAGILDAFIENLPG--GPDNINLAPDGSFWIGLI 254 (355)
Q Consensus 209 ~~~~~i~~~~~~~~~~~~~~~~~~~~~g--~p~~i~~d~~G~lwv~~~ 254 (355)
+...+|+++. .+.+... .++. .--+++.- +|+|||..+
T Consensus 415 ---G~~e~ydp~~---~~W~~~~-~m~~~r~~~~~~v~-~~~IYviGG 454 (480)
T PHA02790 415 ---RNAEFYCESS---NTWTLID-DPIYPRDNPELIIV-DNKLLLIGG 454 (480)
T ss_pred ---CceEEecCCC---CcEeEcC-CCCCCccccEEEEE-CCEEEEECC
Confidence 3467788743 3333332 2221 11223332 468888754
No 211
>KOG0645 consensus WD40 repeat protein [General function prediction only]
Probab=94.70 E-value=2.8 Score=36.91 Aligned_cols=148 Identities=13% Similarity=0.087 Sum_probs=93.1
Q ss_pred eEecCCCCCCCceEEEeeCCCeEEEEecCCEEEEEEcCCCeeEEeeccC---CCcccCeEECCCCCEEEEeCC-CcEEEE
Q 018474 44 TKLGEGCVNHPEDVSVVVSKGALYTATRDGWVKYFILHNETLVNWKHID---SQSLLGLTTTKDGGVILCDNE-KGLLKV 119 (355)
Q Consensus 44 ~~~~~~~~~~p~~i~~d~~~g~l~~~~~~g~i~~~~~~~g~~~~~~~~~---~~p~~gl~~d~~g~L~v~~~~-~gl~~~ 119 (355)
..+.++.-..-.++++.|.+..|-+++.+..+..+...+++++-..... +... ++++.++|++..+... +.+...
T Consensus 54 ~vld~~hkrsVRsvAwsp~g~~La~aSFD~t~~Iw~k~~~efecv~~lEGHEnEVK-~Vaws~sG~~LATCSRDKSVWiW 132 (312)
T KOG0645|consen 54 TVLDDGHKRSVRSVAWSPHGRYLASASFDATVVIWKKEDGEFECVATLEGHENEVK-CVAWSASGNYLATCSRDKSVWIW 132 (312)
T ss_pred EeccccchheeeeeeecCCCcEEEEeeccceEEEeecCCCceeEEeeeecccccee-EEEEcCCCCEEEEeeCCCeEEEE
Confidence 3455565677889999988888888899998888888788877665443 3467 8999999987765443 444444
Q ss_pred --cCCC-eEE---EcCCcCCcccEEEccCCcEEEEeCCCCCCCccccccccccCCCCeEEEEeCCCCeEEEeeccc---c
Q 018474 120 --TEEG-VEA---IVPDASFTNDVIAASDGTLYFTVASTKYTPTDFYKDMAEGKPYGQLRKYDPKLKETTVLHEGF---Y 190 (355)
Q Consensus 120 --~~~g-~~~---~~~~~~~~~~l~~d~dG~ly~~d~~~~~~~~~~~~~~~~~~~~g~l~~~dp~~~~~~~~~~~~---~ 190 (355)
+.++ ++. +......+-.++..|.-.|.|+-+. ..+-++|+.++ ...+...+.-. .
T Consensus 133 e~deddEfec~aVL~~HtqDVK~V~WHPt~dlL~S~SY---------------DnTIk~~~~~~-dddW~c~~tl~g~~~ 196 (312)
T KOG0645|consen 133 EIDEDDEFECIAVLQEHTQDVKHVIWHPTEDLLFSCSY---------------DNTIKVYRDED-DDDWECVQTLDGHEN 196 (312)
T ss_pred EecCCCcEEEEeeeccccccccEEEEcCCcceeEEecc---------------CCeEEEEeecC-CCCeeEEEEecCccc
Confidence 3333 433 3333356666778776667666443 12345666665 45554433211 1
Q ss_pred ccccEEEeCCCCEEEEEe
Q 018474 191 FANGIALSKNEDFVVVCE 208 (355)
Q Consensus 191 ~pngi~~~~dg~~l~v~~ 208 (355)
.--.++|++.|..+.-+.
T Consensus 197 TVW~~~F~~~G~rl~s~s 214 (312)
T KOG0645|consen 197 TVWSLAFDNIGSRLVSCS 214 (312)
T ss_pred eEEEEEecCCCceEEEec
Confidence 234678889887554443
No 212
>KOG0316 consensus Conserved WD40 repeat-containing protein [Function unknown]
Probab=94.66 E-value=2.6 Score=36.40 Aligned_cols=117 Identities=12% Similarity=0.124 Sum_probs=75.0
Q ss_pred CeEECCCCCEEEEeCCCcEEEEc-C-CC--eEEEcCCcCCcccEEEccCCcEEEEeCCCCCCCccccccccccCCCCeEE
Q 018474 98 GLTTTKDGGVILCDNEKGLLKVT-E-EG--VEAIVPDASFTNDVIAASDGTLYFTVASTKYTPTDFYKDMAEGKPYGQLR 173 (355)
Q Consensus 98 gl~~d~~g~L~v~~~~~gl~~~~-~-~g--~~~~~~~~~~~~~l~~d~dG~ly~~d~~~~~~~~~~~~~~~~~~~~g~l~ 173 (355)
...+..+|+--++......+++. + .| ++++......+-+++...|+.=+.+- .....++
T Consensus 22 avryN~dGnY~ltcGsdrtvrLWNp~rg~liktYsghG~EVlD~~~s~Dnskf~s~-----------------GgDk~v~ 84 (307)
T KOG0316|consen 22 AVRYNVDGNYCLTCGSDRTVRLWNPLRGALIKTYSGHGHEVLDAALSSDNSKFASC-----------------GGDKAVQ 84 (307)
T ss_pred EEEEccCCCEEEEcCCCceEEeecccccceeeeecCCCceeeeccccccccccccC-----------------CCCceEE
Confidence 56666777766665555666664 4 56 67666554556666655554322221 1234688
Q ss_pred EEeCCCCeEEE-eeccccccccEEEeCCCCEEEEEeCCCCeEEEEEeCCCCCcceeEecc
Q 018474 174 KYDPKLKETTV-LHEGFYFANGIALSKNEDFVVVCESWKFRCRRYWLKGDRAGILDAFIE 232 (355)
Q Consensus 174 ~~dp~~~~~~~-~~~~~~~pngi~~~~dg~~l~v~~~~~~~i~~~~~~~~~~~~~~~~~~ 232 (355)
.||-+||++.. +......-|.+.+..+. .++++.+....+..||-.....+..+++.+
T Consensus 85 vwDV~TGkv~Rr~rgH~aqVNtV~fNees-SVv~SgsfD~s~r~wDCRS~s~ePiQilde 143 (307)
T KOG0316|consen 85 VWDVNTGKVDRRFRGHLAQVNTVRFNEES-SVVASGSFDSSVRLWDCRSRSFEPIQILDE 143 (307)
T ss_pred EEEcccCeeeeecccccceeeEEEecCcc-eEEEeccccceeEEEEcccCCCCccchhhh
Confidence 99999997643 34445667889997655 588888888889999986655555555543
No 213
>KOG0288 consensus WD40 repeat protein TipD [General function prediction only]
Probab=94.61 E-value=1 Score=41.77 Aligned_cols=125 Identities=9% Similarity=0.076 Sum_probs=75.6
Q ss_pred EEEEecCCEEEEEEcCCCeeEEeeccCCCcccCeEECCCCC-EEEEeCCCcEEEEc-CCC--eEEEcCC-c---CCcccE
Q 018474 66 LYTATRDGWVKYFILHNETLVNWKHIDSQSLLGLTTTKDGG-VILCDNEKGLLKVT-EEG--VEAIVPD-A---SFTNDV 137 (355)
Q Consensus 66 l~~~~~~g~i~~~~~~~g~~~~~~~~~~~p~~gl~~d~~g~-L~v~~~~~gl~~~~-~~g--~~~~~~~-~---~~~~~l 137 (355)
+..+..++.|..+|..+++...-...++... ++....+|+ |..+...+-+-.++ .+. ...+... . ...+.+
T Consensus 315 ~~SgH~DkkvRfwD~Rs~~~~~sv~~gg~vt-Sl~ls~~g~~lLsssRDdtl~viDlRt~eI~~~~sA~g~k~asDwtrv 393 (459)
T KOG0288|consen 315 VISGHFDKKVRFWDIRSADKTRSVPLGGRVT-SLDLSMDGLELLSSSRDDTLKVIDLRTKEIRQTFSAEGFKCASDWTRV 393 (459)
T ss_pred eeecccccceEEEeccCCceeeEeecCccee-eEeeccCCeEEeeecCCCceeeeecccccEEEEeecccccccccccee
Confidence 3445568888888876666555455566666 777777775 44443223334444 222 3333222 1 456778
Q ss_pred EEccCCcEEEEeCCCCCCCccccccccccCCCCeEEEEeCCCCeEEEeeccccc---cccEEEeCCCCEEEEEe
Q 018474 138 IAASDGTLYFTVASTKYTPTDFYKDMAEGKPYGQLRKYDPKLKETTVLHEGFYF---ANGIALSKNEDFVVVCE 208 (355)
Q Consensus 138 ~~d~dG~ly~~d~~~~~~~~~~~~~~~~~~~~g~l~~~dp~~~~~~~~~~~~~~---pngi~~~~dg~~l~v~~ 208 (355)
+++|+|.+..+.+. .|.+|.|+..+++.+........ .+.+++++-|..+.-++
T Consensus 394 vfSpd~~YvaAGS~-----------------dgsv~iW~v~tgKlE~~l~~s~s~~aI~s~~W~~sG~~Llsad 450 (459)
T KOG0288|consen 394 VFSPDGSYVAAGSA-----------------DGSVYIWSVFTGKLEKVLSLSTSNAAITSLSWNPSGSGLLSAD 450 (459)
T ss_pred EECCCCceeeeccC-----------------CCcEEEEEccCceEEEEeccCCCCcceEEEEEcCCCchhhccc
Confidence 89999876665443 78999999999988766433221 23456667666555544
No 214
>KOG0649 consensus WD40 repeat protein [General function prediction only]
Probab=94.53 E-value=2.9 Score=36.32 Aligned_cols=71 Identities=14% Similarity=0.113 Sum_probs=49.6
Q ss_pred CCCCceEEEeeCCCeEEEEecCCEEEEEEcCCCeeEEeecc-CCCcccCeEE-CCCCCEEEEeCCCcEEEEc--CCC
Q 018474 51 VNHPEDVSVVVSKGALYTATRDGWVKYFILHNETLVNWKHI-DSQSLLGLTT-TKDGGVILCDNEKGLLKVT--EEG 123 (355)
Q Consensus 51 ~~~p~~i~~d~~~g~l~~~~~~g~i~~~~~~~g~~~~~~~~-~~~p~~gl~~-d~~g~L~v~~~~~gl~~~~--~~g 123 (355)
+..-.+|-.||+.+.++.+..|+.++.+|.++|+++..... ....+ .++. ..++.++-+. .+|..|+- +++
T Consensus 114 vPeINam~ldP~enSi~~AgGD~~~y~~dlE~G~i~r~~rGHtDYvH-~vv~R~~~~qilsG~-EDGtvRvWd~kt~ 188 (325)
T KOG0649|consen 114 VPEINAMWLDPSENSILFAGGDGVIYQVDLEDGRIQREYRGHTDYVH-SVVGRNANGQILSGA-EDGTVRVWDTKTQ 188 (325)
T ss_pred CCccceeEeccCCCcEEEecCCeEEEEEEecCCEEEEEEcCCcceee-eeeecccCcceeecC-CCccEEEEecccc
Confidence 44456889998899999888999999999999998865432 23355 5554 4566666553 45666664 454
No 215
>COG3490 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=94.51 E-value=2.7 Score=37.44 Aligned_cols=117 Identities=17% Similarity=0.166 Sum_probs=66.0
Q ss_pred EEeCCCCEEEEEeCC----CCeEEEEEeCCC--CCcceeEecccCCCCcCceEECCCCCEEEEeecCCchhhHhhhcchh
Q 018474 196 ALSKNEDFVVVCESW----KFRCRRYWLKGD--RAGILDAFIENLPGGPDNINLAPDGSFWIGLIKMNQTGVRAIQKCRE 269 (355)
Q Consensus 196 ~~~~dg~~l~v~~~~----~~~i~~~~~~~~--~~~~~~~~~~~~~g~p~~i~~d~~G~lwv~~~~~~~~~~~~~~~~~~ 269 (355)
++|+||+.||.+|-. ++-|-.|+.+.. +.+++..+ .--|..+..-.||+..|..+++--. .|.
T Consensus 120 vfs~dG~~LYATEndfd~~rGViGvYd~r~~fqrvgE~~t~----GiGpHev~lm~DGrtlvvanGGIet-------hpd 188 (366)
T COG3490 120 VFSPDGRLLYATENDFDPNRGVIGVYDAREGFQRVGEFSTH----GIGPHEVTLMADGRTLVVANGGIET-------HPD 188 (366)
T ss_pred ccCCCCcEEEeecCCCCCCCceEEEEecccccceecccccC----CcCcceeEEecCCcEEEEeCCceec-------ccc
Confidence 689999999999853 445667776421 12222211 1127778888999988887764211 110
Q ss_pred H-HHHHHhccchhhcccCCCCCCceEEEEEeCCCCeEEEEEECCCCCcccceeEEE-EeCCEEEEeec
Q 018474 270 K-WELLDAYPGLISLLLPMGSDAGARVVKVDGNDGKIIRDFNDPDATYISFVTSAA-EFDGNLYLASL 335 (355)
Q Consensus 270 ~-~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~g~~~~~~~~~~g~~~~~~~~~~-~~~g~L~v~~~ 335 (355)
. |..+ .| . ..+ ..+..+|..+|+.++...-|..+....+.-+. ..+|++|+|..
T Consensus 189 fgR~~l-Nl-------d---sMe-PSlvlld~atG~liekh~Lp~~l~~lSiRHld~g~dgtvwfgcQ 244 (366)
T COG3490 189 FGRTEL-NL-------D---SME-PSLVLLDAATGNLIEKHTLPASLRQLSIRHLDIGRDGTVWFGCQ 244 (366)
T ss_pred cCcccc-ch-------h---hcC-ccEEEEeccccchhhhccCchhhhhcceeeeeeCCCCcEEEEEE
Confidence 0 0000 00 0 011 23667784499998888777443222333333 34699999864
No 216
>KOG0646 consensus WD40 repeat protein [General function prediction only]
Probab=94.51 E-value=2.8 Score=39.55 Aligned_cols=164 Identities=10% Similarity=0.066 Sum_probs=84.9
Q ss_pred CCCCCCceEEEeeCCCeEEEEecCCEEEEEEc-------CCCee---EEeeccCCCcccCeEECCC---CCEEEEeCCCc
Q 018474 49 GCVNHPEDVSVVVSKGALYTATRDGWVKYFIL-------HNETL---VNWKHIDSQSLLGLTTTKD---GGVILCDNEKG 115 (355)
Q Consensus 49 ~~~~~p~~i~~d~~~g~l~~~~~~g~i~~~~~-------~~g~~---~~~~~~~~~p~~gl~~d~~---g~L~v~~~~~g 115 (355)
..++.-.+|.+..++..++.++.||.|..+.. .++.. ..|....-.+. .|..+.. .+||-+.- +.
T Consensus 121 aHYQ~ITcL~fs~dgs~iiTgskDg~V~vW~l~~lv~a~~~~~~~p~~~f~~HtlsIT-Dl~ig~Gg~~~rl~TaS~-D~ 198 (476)
T KOG0646|consen 121 AHYQSITCLKFSDDGSHIITGSKDGAVLVWLLTDLVSADNDHSVKPLHIFSDHTLSIT-DLQIGSGGTNARLYTASE-DR 198 (476)
T ss_pred hhccceeEEEEeCCCcEEEecCCCccEEEEEEEeecccccCCCccceeeeccCcceeE-EEEecCCCccceEEEecC-Cc
Confidence 45677788888844555666788998877753 12111 12222122233 5555533 35665543 34
Q ss_pred EEEE-c-CCC--eEEEcCCcCCcccEEEccCC-cEEEEeCCCCCCCccccccccccCC--CCeE--EEEeCCCCeEEEee
Q 018474 116 LLKV-T-EEG--VEAIVPDASFTNDVIAASDG-TLYFTVASTKYTPTDFYKDMAEGKP--YGQL--RKYDPKLKETTVLH 186 (355)
Q Consensus 116 l~~~-~-~~g--~~~~~~~~~~~~~l~~d~dG-~ly~~d~~~~~~~~~~~~~~~~~~~--~g~l--~~~dp~~~~~~~~~ 186 (355)
..++ + ..| +..+..+ ..++++++||-+ .+|++...++.... .+...+ ..++ -.+++...++..+.
T Consensus 199 t~k~wdlS~g~LLlti~fp-~si~av~lDpae~~~yiGt~~G~I~~~-----~~~~~~~~~~~v~~k~~~~~~t~~~~~~ 272 (476)
T KOG0646|consen 199 TIKLWDLSLGVLLLTITFP-SSIKAVALDPAERVVYIGTEEGKIFQN-----LLFKLSGQSAGVNQKGRHEENTQINVLV 272 (476)
T ss_pred eEEEEEeccceeeEEEecC-CcceeEEEcccccEEEecCCcceEEee-----ehhcCCcccccccccccccccceeeeec
Confidence 4444 4 245 3333222 578999999977 67777654221110 001110 0001 11222222333332
Q ss_pred ccc--cccccEEEeCCCCEEEEEeCCCCeEEEEEeCC
Q 018474 187 EGF--YFANGIALSKNEDFVVVCESWKFRCRRYWLKG 221 (355)
Q Consensus 187 ~~~--~~pngi~~~~dg~~l~v~~~~~~~i~~~~~~~ 221 (355)
.+- ..-..++++-||. ++++....+.+..+++..
T Consensus 273 Gh~~~~~ITcLais~Dgt-lLlSGd~dg~VcvWdi~S 308 (476)
T KOG0646|consen 273 GHENESAITCLAISTDGT-LLLSGDEDGKVCVWDIYS 308 (476)
T ss_pred cccCCcceeEEEEecCcc-EEEeeCCCCCEEEEecch
Confidence 221 2345788999997 666666678888888743
No 217
>PF14517 Tachylectin: Tachylectin; PDB: 1TL2_A.
Probab=94.46 E-value=0.21 Score=43.11 Aligned_cols=119 Identities=18% Similarity=0.197 Sum_probs=63.5
Q ss_pred cCceEecCCCCCCCceEEEeeCCCeEEEEecCCEEEEEEcCCCeeEEee---------ccCCCcccCeEECCCCCEEEEe
Q 018474 41 KGLTKLGEGCVNHPEDVSVVVSKGALYTATRDGWVKYFILHNETLVNWK---------HIDSQSLLGLTTTKDGGVILCD 111 (355)
Q Consensus 41 ~~~~~~~~~~~~~p~~i~~d~~~g~l~~~~~~g~i~~~~~~~g~~~~~~---------~~~~~p~~gl~~d~~g~L~v~~ 111 (355)
...++|..+....=..|+++ ..|.||.-+.+|.++|..+.+.....|. ..-+... .+.++++|-||.-+
T Consensus 70 ~~~~~Ig~g~W~~F~~i~~d-~~G~LYaV~~~G~lyR~~~~~~~~~~W~~~~~~~iG~~GW~~f~-~vfa~~~GvLY~i~ 147 (229)
T PF14517_consen 70 SGSKQIGDGGWNSFKFIFFD-PTGVLYAVTPDGKLYRHPRPTNGSDNWIGGSGKKIGGTGWNDFD-AVFAGPNGVLYAIT 147 (229)
T ss_dssp HH-EEEE-S-GGG-SEEEE--TTS-EEEEETT-EEEEES---STT--HHH-HSEEEE-SSGGGEE-EEEE-TTS-EEEEE
T ss_pred ccCcccccCcccceeEEEec-CCccEEEeccccceeeccCCCccCcchhhccceecccCCCccce-EEEeCCCccEEEEc
Confidence 34577887744444599999 8999999999999988865333222221 1112344 67889999999998
Q ss_pred CCCcEEEEc-CCC-------eEEEcC-C-cCCcccEEEccCCcEEEEeCCCCCCCccccccccccCCCCeEEEEeCCC
Q 018474 112 NEKGLLKVT-EEG-------VEAIVP-D-ASFTNDVIAASDGTLYFTVASTKYTPTDFYKDMAEGKPYGQLRKYDPKL 179 (355)
Q Consensus 112 ~~~gl~~~~-~~g-------~~~~~~-~-~~~~~~l~~d~dG~ly~~d~~~~~~~~~~~~~~~~~~~~g~l~~~dp~~ 179 (355)
..+.+++.. +++ .+.+.. . -.....|...++|+||..++ .|.|||+.+.+
T Consensus 148 ~dg~~~~~~~p~~~~~~W~~~s~~v~~~gw~~~~~i~~~~~g~L~~V~~------------------~G~lyr~~~p~ 207 (229)
T PF14517_consen 148 PDGRLYRRYRPDGGSDRWLSGSGLVGGGGWDSFHFIFFSPDGNLWAVKS------------------NGKLYRGRPPQ 207 (229)
T ss_dssp TTE-EEEE---SSTT--HHHH-EEEESSSGGGEEEEEE-TTS-EEEE-E------------------TTEEEEES---
T ss_pred CCCceEEeCCCCCCCCccccccceeccCCcccceEEeeCCCCcEEEEec------------------CCEEeccCCcc
Confidence 665577774 322 122222 1 14466678889999997633 56789887644
No 218
>KOG3881 consensus Uncharacterized conserved protein [Function unknown]
Probab=94.40 E-value=0.6 Score=42.89 Aligned_cols=97 Identities=10% Similarity=0.119 Sum_probs=61.1
Q ss_pred CCceEEEeeC--CCeEEEEecCCEEEEEEcCCCe--eEEeeccCCCcccCeEECCCCC-EEEEeCCCcEEEEcC-CC--e
Q 018474 53 HPEDVSVVVS--KGALYTATRDGWVKYFILHNET--LVNWKHIDSQSLLGLTTTKDGG-VILCDNEKGLLKVTE-EG--V 124 (355)
Q Consensus 53 ~p~~i~~d~~--~g~l~~~~~~g~i~~~~~~~g~--~~~~~~~~~~p~~gl~~d~~g~-L~v~~~~~gl~~~~~-~g--~ 124 (355)
.+.++.+-+. ...+..++..+.+..||+..++ +..+....+... .+..+++|+ +|+++..+.+..+|- .+ .
T Consensus 204 W~tdi~Fl~g~~~~~fat~T~~hqvR~YDt~~qRRPV~~fd~~E~~is-~~~l~p~gn~Iy~gn~~g~l~~FD~r~~kl~ 282 (412)
T KOG3881|consen 204 WITDIRFLEGSPNYKFATITRYHQVRLYDTRHQRRPVAQFDFLENPIS-STGLTPSGNFIYTGNTKGQLAKFDLRGGKLL 282 (412)
T ss_pred eeccceecCCCCCceEEEEecceeEEEecCcccCcceeEeccccCcce-eeeecCCCcEEEEecccchhheecccCceee
Confidence 3445555533 3456667778999999987553 223322233344 788888887 688887777888883 44 1
Q ss_pred EE-EcCCcCCcccEEEccCCcEEEEeC
Q 018474 125 EA-IVPDASFTNDVIAASDGTLYFTVA 150 (355)
Q Consensus 125 ~~-~~~~~~~~~~l~~d~dG~ly~~d~ 150 (355)
.. +..-...+.++..++.+.+..+..
T Consensus 283 g~~~kg~tGsirsih~hp~~~~las~G 309 (412)
T KOG3881|consen 283 GCGLKGITGSIRSIHCHPTHPVLASCG 309 (412)
T ss_pred ccccCCccCCcceEEEcCCCceEEeec
Confidence 11 222227889999998887766543
No 219
>KOG1538 consensus Uncharacterized conserved protein WDR10, contains WD40 repeats [General function prediction only]
Probab=94.39 E-value=5.9 Score=39.34 Aligned_cols=61 Identities=13% Similarity=0.086 Sum_probs=41.0
Q ss_pred CCCceEEEeeCCCeEEEEecCCEEEEEEcCCCeeEEeecc-CCCcccCeEECCCCCEEEEeCCC
Q 018474 52 NHPEDVSVVVSKGALYTATRDGWVKYFILHNETLVNWKHI-DSQSLLGLTTTKDGGVILCDNEK 114 (355)
Q Consensus 52 ~~p~~i~~d~~~g~l~~~~~~g~i~~~~~~~g~~~~~~~~-~~~p~~gl~~d~~g~L~v~~~~~ 114 (355)
..-..+++.|++..|.++. +.+++.+|+.+|...+..+. ....+ .++...+|..+.....+
T Consensus 13 hci~d~afkPDGsqL~lAA-g~rlliyD~ndG~llqtLKgHKDtVy-cVAys~dGkrFASG~aD 74 (1081)
T KOG1538|consen 13 HCINDIAFKPDGTQLILAA-GSRLLVYDTSDGTLLQPLKGHKDTVY-CVAYAKDGKRFASGSAD 74 (1081)
T ss_pred cchheeEECCCCceEEEec-CCEEEEEeCCCcccccccccccceEE-EEEEccCCceeccCCCc
Confidence 3456778886666666664 56799999988865443322 23467 88888888888765443
No 220
>KOG1407 consensus WD40 repeat protein [Function unknown]
Probab=94.37 E-value=2.3 Score=37.24 Aligned_cols=94 Identities=12% Similarity=0.141 Sum_probs=51.1
Q ss_pred eEEEeeCCCeEEEEecCCEEEEEEcCCCeeEEeeccCCCcccCeEECCCCCEEEEeCCCcEEEEc--C-CC-eEEEcCCc
Q 018474 56 DVSVVVSKGALYTATRDGWVKYFILHNETLVNWKHIDSQSLLGLTTTKDGGVILCDNEKGLLKVT--E-EG-VEAIVPDA 131 (355)
Q Consensus 56 ~i~~d~~~g~l~~~~~~g~i~~~~~~~g~~~~~~~~~~~p~~gl~~d~~g~L~v~~~~~gl~~~~--~-~g-~~~~~~~~ 131 (355)
-+.+.|+++.+-++..+..|.-+|.++-+...-....-..+ -+.+..++.+++.+.+.|.+.+- + -. +..+....
T Consensus 111 ~i~wsp~g~~~~~~~kdD~it~id~r~~~~~~~~~~~~e~n-e~~w~~~nd~Fflt~GlG~v~ILsypsLkpv~si~AH~ 189 (313)
T KOG1407|consen 111 NITWSPDGEYIAVGNKDDRITFIDARTYKIVNEEQFKFEVN-EISWNNSNDLFFLTNGLGCVEILSYPSLKPVQSIKAHP 189 (313)
T ss_pred EEEEcCCCCEEEEecCcccEEEEEecccceeehhcccceee-eeeecCCCCEEEEecCCceEEEEeccccccccccccCC
Confidence 34455555555556666666666664443322111111233 56666778899988876755443 2 22 33333332
Q ss_pred CCcccEEEccCCcEEEEeC
Q 018474 132 SFTNDVIAASDGTLYFTVA 150 (355)
Q Consensus 132 ~~~~~l~~d~dG~ly~~d~ 150 (355)
..--.+.+||+|+.+.+.+
T Consensus 190 snCicI~f~p~GryfA~Gs 208 (313)
T KOG1407|consen 190 SNCICIEFDPDGRYFATGS 208 (313)
T ss_pred cceEEEEECCCCceEeecc
Confidence 3333466889998776544
No 221
>KOG4378 consensus Nuclear protein COP1 [Signal transduction mechanisms]
Probab=94.30 E-value=1.6 Score=41.57 Aligned_cols=83 Identities=12% Similarity=0.159 Sum_probs=50.1
Q ss_pred CCeEEEEeCCCCeEEEe-eccccc-cccEEEeCCCCEEEEEeCCCCeEEEEEeCCCCCcceeEecccCCCCcCceEECCC
Q 018474 169 YGQLRKYDPKLKETTVL-HEGFYF-ANGIALSKNEDFVVVCESWKFRCRRYWLKGDRAGILDAFIENLPGGPDNINLAPD 246 (355)
Q Consensus 169 ~g~l~~~dp~~~~~~~~-~~~~~~-pngi~~~~dg~~l~v~~~~~~~i~~~~~~~~~~~~~~~~~~~~~g~p~~i~~d~~ 246 (355)
.|.+..||..+..-..- ...... ..|||++|-+..|+++--...+|..||+...+....-. . ..| -..+++.++
T Consensus 186 ~G~VtlwDv~g~sp~~~~~~~HsAP~~gicfspsne~l~vsVG~Dkki~~yD~~s~~s~~~l~-y-~~P--lstvaf~~~ 261 (673)
T KOG4378|consen 186 KGAVTLWDVQGMSPIFHASEAHSAPCRGICFSPSNEALLVSVGYDKKINIYDIRSQASTDRLT-Y-SHP--LSTVAFSEC 261 (673)
T ss_pred CCeEEEEeccCCCcccchhhhccCCcCcceecCCccceEEEecccceEEEeecccccccceee-e-cCC--cceeeecCC
Confidence 56777888643321111 111222 36999999988888887778899999985433222211 1 222 245778888
Q ss_pred CCEEEEeec
Q 018474 247 GSFWIGLIK 255 (355)
Q Consensus 247 G~lwv~~~~ 255 (355)
|.++++...
T Consensus 262 G~~L~aG~s 270 (673)
T KOG4378|consen 262 GTYLCAGNS 270 (673)
T ss_pred ceEEEeecC
Confidence 977766543
No 222
>KOG0268 consensus Sof1-like rRNA processing protein (contains WD40 repeats) [RNA processing and modification]
Probab=94.29 E-value=0.23 Score=45.17 Aligned_cols=144 Identities=10% Similarity=0.074 Sum_probs=86.1
Q ss_pred ceEEEeeCCCeEEEEe-cCCEEEEEEcCCCeeEEeeccCCCcccCeEECCCCCEEEEeCC-CcEEEEc-C--CC-eEEEc
Q 018474 55 EDVSVVVSKGALYTAT-RDGWVKYFILHNETLVNWKHIDSQSLLGLTTTKDGGVILCDNE-KGLLKVT-E--EG-VEAIV 128 (355)
Q Consensus 55 ~~i~~d~~~g~l~~~~-~~g~i~~~~~~~g~~~~~~~~~~~p~~gl~~d~~g~L~v~~~~-~gl~~~~-~--~g-~~~~~ 128 (355)
.++-+.|-...+..++ .++.|+.+|..+++..+-.....+++ +|++.+++-.|++... ..+|-+| . .. +.+..
T Consensus 191 ~svkfNpvETsILas~~sDrsIvLyD~R~~~Pl~KVi~~mRTN-~IswnPeafnF~~a~ED~nlY~~DmR~l~~p~~v~~ 269 (433)
T KOG0268|consen 191 SSVKFNPVETSILASCASDRSIVLYDLRQASPLKKVILTMRTN-TICWNPEAFNFVAANEDHNLYTYDMRNLSRPLNVHK 269 (433)
T ss_pred eEEecCCCcchheeeeccCCceEEEecccCCccceeeeecccc-ceecCccccceeeccccccceehhhhhhcccchhhc
Confidence 5555664444444443 68899999998887654333456788 9999997766665444 4588887 2 22 44444
Q ss_pred CCcCCcccEEEccCCcEEEEeCCCCCCCccccccccccCCCCeEEEEeCCCCeEE-Eee-ccccccccEEEeCCCCEEEE
Q 018474 129 PDASFTNDVIAASDGTLYFTVASTKYTPTDFYKDMAEGKPYGQLRKYDPKLKETT-VLH-EGFYFANGIALSKNEDFVVV 206 (355)
Q Consensus 129 ~~~~~~~~l~~d~dG~ly~~d~~~~~~~~~~~~~~~~~~~~g~l~~~dp~~~~~~-~~~-~~~~~pngi~~~~dg~~l~v 206 (355)
+..+.+.++.++|-|+=+++.+- ..+-+||..+- +.-+ .+. ...+.--++.+|-|.+ .++
T Consensus 270 dhvsAV~dVdfsptG~Efvsgsy---------------DksIRIf~~~~--~~SRdiYhtkRMq~V~~Vk~S~Dsk-yi~ 331 (433)
T KOG0268|consen 270 DHVSAVMDVDFSPTGQEFVSGSY---------------DKSIRIFPVNH--GHSRDIYHTKRMQHVFCVKYSMDSK-YII 331 (433)
T ss_pred ccceeEEEeccCCCcchhccccc---------------cceEEEeecCC--CcchhhhhHhhhheeeEEEEecccc-EEE
Confidence 44467888889999987776543 11234444442 2211 111 1123345678888877 455
Q ss_pred EeCCCCeEEEE
Q 018474 207 CESWKFRCRRY 217 (355)
Q Consensus 207 ~~~~~~~i~~~ 217 (355)
+.+....|..|
T Consensus 332 SGSdd~nvRlW 342 (433)
T KOG0268|consen 332 SGSDDGNVRLW 342 (433)
T ss_pred ecCCCcceeee
Confidence 66655555444
No 223
>KOG0973 consensus Histone transcription regulator HIRA, WD repeat superfamily [Cell cycle control, cell division, chromosome partitioning; Transcription]
Probab=94.29 E-value=1.1 Score=46.12 Aligned_cols=97 Identities=18% Similarity=0.103 Sum_probs=64.5
Q ss_pred CCCceEEEeeCCCeEEEEecCCEEEEEEcCCCeeEEee-ccCCCcccCeEECCCCCEEEEeCCCcEEEEc---CCC-eEE
Q 018474 52 NHPEDVSVVVSKGALYTATRDGWVKYFILHNETLVNWK-HIDSQSLLGLTTTKDGGVILCDNEKGLLKVT---EEG-VEA 126 (355)
Q Consensus 52 ~~p~~i~~d~~~g~l~~~~~~g~i~~~~~~~g~~~~~~-~~~~~p~~gl~~d~~g~L~v~~~~~gl~~~~---~~g-~~~ 126 (355)
..-.++.++|++-.|...+.++.|..++..+.+..... ...+.+. |+.+|+-|+.+.....++.+++. ..| .+.
T Consensus 130 ~DV~Dv~Wsp~~~~lvS~s~DnsViiwn~~tF~~~~vl~~H~s~VK-Gvs~DP~Gky~ASqsdDrtikvwrt~dw~i~k~ 208 (942)
T KOG0973|consen 130 SDVLDVNWSPDDSLLVSVSLDNSVIIWNAKTFELLKVLRGHQSLVK-GVSWDPIGKYFASQSDDRTLKVWRTSDWGIEKS 208 (942)
T ss_pred CccceeccCCCccEEEEecccceEEEEccccceeeeeeeccccccc-ceEECCccCeeeeecCCceEEEEEcccceeeEe
Confidence 34456778854444444566899999998776543332 2345678 99999999998888777755554 345 555
Q ss_pred EcCCc------CCcccEEEccCCcEEEEe
Q 018474 127 IVPDA------SFTNDVIAASDGTLYFTV 149 (355)
Q Consensus 127 ~~~~~------~~~~~l~~d~dG~ly~~d 149 (355)
+..++ .+..-+..+|||....+-
T Consensus 209 It~pf~~~~~~T~f~RlSWSPDG~~las~ 237 (942)
T KOG0973|consen 209 ITKPFEESPLTTFFLRLSWSPDGHHLASP 237 (942)
T ss_pred eccchhhCCCcceeeecccCCCcCeecch
Confidence 55443 556667888999766543
No 224
>KOG2110 consensus Uncharacterized conserved protein, contains WD40 repeats [Function unknown]
Probab=94.26 E-value=4.1 Score=37.42 Aligned_cols=137 Identities=17% Similarity=0.163 Sum_probs=84.7
Q ss_pred eEEEEeCCCCeEE-EeeccccccccE-EEeCCCCEEEEEe---CCCCeEEEEEeCCCCCcceeEecccCCCCcCceEECC
Q 018474 171 QLRKYDPKLKETT-VLHEGFYFANGI-ALSKNEDFVVVCE---SWKFRCRRYWLKGDRAGILDAFIENLPGGPDNINLAP 245 (355)
Q Consensus 171 ~l~~~dp~~~~~~-~~~~~~~~pngi-~~~~dg~~l~v~~---~~~~~i~~~~~~~~~~~~~~~~~~~~~g~p~~i~~d~ 245 (355)
.+|.||-++-++- .+.+....|.|+ |+++.....|++- +..+.|..|+...- .....+ +...+----++++.
T Consensus 107 ~IyIydI~~MklLhTI~t~~~n~~gl~AlS~n~~n~ylAyp~s~t~GdV~l~d~~nl--~~v~~I-~aH~~~lAalafs~ 183 (391)
T KOG2110|consen 107 SIYIYDIKDMKLLHTIETTPPNPKGLCALSPNNANCYLAYPGSTTSGDVVLFDTINL--QPVNTI-NAHKGPLAALAFSP 183 (391)
T ss_pred cEEEEecccceeehhhhccCCCccceEeeccCCCCceEEecCCCCCceEEEEEcccc--eeeeEE-EecCCceeEEEECC
Confidence 5899997654332 111222456654 5777665455543 34667888886432 222222 12222234477999
Q ss_pred CCCEEEEeecCCchhhHhhhcchhHHHHHHhccchhhcccCCCCCCceEEEEE--eCCCCeEEEEEECCCCCcccceeEE
Q 018474 246 DGSFWIGLIKMNQTGVRAIQKCREKWELLDAYPGLISLLLPMGSDAGARVVKV--DGNDGKIIRDFNDPDATYISFVTSA 323 (355)
Q Consensus 246 ~G~lwv~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~--~~~~g~~~~~~~~~~g~~~~~~~~~ 323 (355)
+|.+..+... .|.|+|+ -| +|+.+..|.- |...-.+.++
T Consensus 184 ~G~llATASe------------------------------------KGTVIRVf~v~-~G~kl~eFRR--G~~~~~IySL 224 (391)
T KOG2110|consen 184 DGTLLATASE------------------------------------KGTVIRVFSVP-EGQKLYEFRR--GTYPVSIYSL 224 (391)
T ss_pred CCCEEEEecc------------------------------------CceEEEEEEcC-CccEeeeeeC--CceeeEEEEE
Confidence 9987776543 3567766 35 8888777754 5445567778
Q ss_pred EEeC-CEEEEeecCCCeEEEeeCCCCC
Q 018474 324 AEFD-GNLYLASLQSNFIGILPLDGPE 349 (355)
Q Consensus 324 ~~~~-g~L~v~~~~~~~i~~~~~~~~~ 349 (355)
.++. .++...+.....|..|+|....
T Consensus 225 ~Fs~ds~~L~~sS~TeTVHiFKL~~~~ 251 (391)
T KOG2110|consen 225 SFSPDSQFLAASSNTETVHIFKLEKVS 251 (391)
T ss_pred EECCCCCeEEEecCCCeEEEEEecccc
Confidence 8775 6666678889999999998876
No 225
>KOG0973 consensus Histone transcription regulator HIRA, WD repeat superfamily [Cell cycle control, cell division, chromosome partitioning; Transcription]
Probab=94.22 E-value=1.7 Score=44.97 Aligned_cols=100 Identities=11% Similarity=0.059 Sum_probs=65.6
Q ss_pred CCCCceEEEeeCCCeEEEEecCCEEEEEEcCC----------C------eeEEee---ccCCCcccCeEECCCCCEEEEe
Q 018474 51 VNHPEDVSVVVSKGALYTATRDGWVKYFILHN----------E------TLVNWK---HIDSQSLLGLTTTKDGGVILCD 111 (355)
Q Consensus 51 ~~~p~~i~~d~~~g~l~~~~~~g~i~~~~~~~----------g------~~~~~~---~~~~~p~~gl~~d~~g~L~v~~ 111 (355)
...-.|+.+.+++.+|+.|+.++-|..+.... | +++.+. ...+... .+.+++++.+.+.-
T Consensus 69 ~~sv~CVR~S~dG~~lAsGSDD~~v~iW~~~~~~~~~~fgs~g~~~~vE~wk~~~~l~~H~~DV~-Dv~Wsp~~~~lvS~ 147 (942)
T KOG0973|consen 69 DGSVNCVRFSPDGSYLASGSDDRLVMIWERAEIGSGTVFGSTGGAKNVESWKVVSILRGHDSDVL-DVNWSPDDSLLVSV 147 (942)
T ss_pred cCceeEEEECCCCCeEeeccCcceEEEeeecccCCcccccccccccccceeeEEEEEecCCCccc-eeccCCCccEEEEe
Confidence 34556777887888888898887655554431 1 122111 1123466 78889999888866
Q ss_pred CCC-cEEEEc-CCC--eEEEcCCcCCcccEEEccCCcEEEEeCC
Q 018474 112 NEK-GLLKVT-EEG--VEAIVPDASFTNDVIAASDGTLYFTVAS 151 (355)
Q Consensus 112 ~~~-gl~~~~-~~g--~~~~~~~~~~~~~l~~d~dG~ly~~d~~ 151 (355)
... .+..++ .+. ++++......+-++.+||-|+.+.+-+.
T Consensus 148 s~DnsViiwn~~tF~~~~vl~~H~s~VKGvs~DP~Gky~ASqsd 191 (942)
T KOG0973|consen 148 SLDNSVIIWNAKTFELLKVLRGHQSLVKGVSWDPIGKYFASQSD 191 (942)
T ss_pred cccceEEEEccccceeeeeeecccccccceEECCccCeeeeecC
Confidence 554 466666 343 6666666688999999999988776554
No 226
>KOG0640 consensus mRNA cleavage stimulating factor complex; subunit 1 [RNA processing and modification]
Probab=94.19 E-value=2.6 Score=37.80 Aligned_cols=188 Identities=11% Similarity=0.075 Sum_probs=100.4
Q ss_pred CCCceEEEeeCCCeEEEEecCCEEEEEEcCCCeeEEeec-c---CCCcccCeEECCCCCEEEEeCCCcEEEEc-C-CC--
Q 018474 52 NHPEDVSVVVSKGALYTATRDGWVKYFILHNETLVNWKH-I---DSQSLLGLTTTKDGGVILCDNEKGLLKVT-E-EG-- 123 (355)
Q Consensus 52 ~~p~~i~~d~~~g~l~~~~~~g~i~~~~~~~g~~~~~~~-~---~~~p~~gl~~d~~g~L~v~~~~~gl~~~~-~-~g-- 123 (355)
.--.+|.++|.+..+.+++.-..+..+|.++-+--.-.. . .+.+. .+...+.|+|||+.+.+|-+++. - .+
T Consensus 217 ~~vrsiSfHPsGefllvgTdHp~~rlYdv~T~QcfvsanPd~qht~ai~-~V~Ys~t~~lYvTaSkDG~IklwDGVS~rC 295 (430)
T KOG0640|consen 217 EPVRSISFHPSGEFLLVGTDHPTLRLYDVNTYQCFVSANPDDQHTGAIT-QVRYSSTGSLYVTASKDGAIKLWDGVSNRC 295 (430)
T ss_pred ceeeeEeecCCCceEEEecCCCceeEEeccceeEeeecCccccccccee-EEEecCCccEEEEeccCCcEEeeccccHHH
Confidence 445688899888888888876666777765443221110 0 12344 67778999999998887766664 2 33
Q ss_pred eEEEcC--CcCCcccEEEccCCcEEEEeCCCCCCCccccccccccCCCCeEEEEeCC--CCeEEEeeccccccccEEEeC
Q 018474 124 VEAIVP--DASFTNDVIAASDGTLYFTVASTKYTPTDFYKDMAEGKPYGQLRKYDPK--LKETTVLHEGFYFANGIALSK 199 (355)
Q Consensus 124 ~~~~~~--~~~~~~~l~~d~dG~ly~~d~~~~~~~~~~~~~~~~~~~~g~l~~~dp~--~~~~~~~~~~~~~pngi~~~~ 199 (355)
++.+.. ....+.+..+..+|+..++... +....+||-.....+.+|... +|+.. +... ..|.-
T Consensus 296 v~t~~~AH~gsevcSa~Ftkn~kyiLsSG~------DS~vkLWEi~t~R~l~~YtGAg~tgrq~-~rtq------AvFNh 362 (430)
T KOG0640|consen 296 VRTIGNAHGGSEVCSAVFTKNGKYILSSGK------DSTVKLWEISTGRMLKEYTGAGTTGRQK-HRTQ------AVFNH 362 (430)
T ss_pred HHHHHhhcCCceeeeEEEccCCeEEeecCC------cceeeeeeecCCceEEEEecCCcccchh-hhhh------hhhcC
Confidence 544432 1256777888899987776432 233344554433345566432 12111 1111 11222
Q ss_pred CCCEEEEEeCCCCeEEEEEeCCCCCcceeEecccCCCCcCceEECCCCCEEEEeec
Q 018474 200 NEDFVVVCESWKFRCRRYWLKGDRAGILDAFIENLPGGPDNINLAPDGSFWIGLIK 255 (355)
Q Consensus 200 dg~~l~v~~~~~~~i~~~~~~~~~~~~~~~~~~~~~g~p~~i~~d~~G~lwv~~~~ 255 (355)
.+.++++-+...+.+..|+-... .....+.-+..+.++-+.-++.+-.++.+..
T Consensus 363 tEdyVl~pDEas~slcsWdaRta--dr~~l~slgHn~a~R~i~HSP~~p~FmTcsd 416 (430)
T KOG0640|consen 363 TEDYVLFPDEASNSLCSWDARTA--DRVALLSLGHNGAVRWIVHSPVEPAFMTCSD 416 (430)
T ss_pred ccceEEccccccCceeeccccch--hhhhhcccCCCCCceEEEeCCCCCceeeecc
Confidence 33344454545566777765321 1111122133344555555555555555544
No 227
>PHA03098 kelch-like protein; Provisional
Probab=94.11 E-value=6.7 Score=38.81 Aligned_cols=134 Identities=9% Similarity=-0.011 Sum_probs=69.9
Q ss_pred EEEEEEcCCCeeEEeeccC-CC-cccCeEECCCCCEEEEeCCC------cEEEEcC-CC-eEEEcCCc-CCcccEEEccC
Q 018474 74 WVKYFILHNETLVNWKHID-SQ-SLLGLTTTKDGGVILCDNEK------GLLKVTE-EG-VEAIVPDA-SFTNDVIAASD 142 (355)
Q Consensus 74 ~i~~~~~~~g~~~~~~~~~-~~-p~~gl~~d~~g~L~v~~~~~------gl~~~~~-~g-~~~~~~~~-~~~~~l~~d~d 142 (355)
.++++|+.++++....... .+ -. +++. -+|+||+..... .+.++++ ++ .+..+... ..-...+..-+
T Consensus 312 ~v~~yd~~~~~W~~~~~~~~~R~~~-~~~~-~~~~lyv~GG~~~~~~~~~v~~yd~~~~~W~~~~~lp~~r~~~~~~~~~ 389 (534)
T PHA03098 312 SVVSYDTKTKSWNKVPELIYPRKNP-GVTV-FNNRIYVIGGIYNSISLNTVESWKPGESKWREEPPLIFPRYNPCVVNVN 389 (534)
T ss_pred cEEEEeCCCCeeeECCCCCcccccc-eEEE-ECCEEEEEeCCCCCEecceEEEEcCCCCceeeCCCcCcCCccceEEEEC
Confidence 5789999888887654322 11 12 3333 367899865321 2667774 44 44433221 11112223346
Q ss_pred CcEEEEeCCCCCCCccccccccccCCCCeEEEEeCCCCeEEEeecccc-ccccEEEeCCCCEEEEEeCC--------CCe
Q 018474 143 GTLYFTVASTKYTPTDFYKDMAEGKPYGQLRKYDPKLKETTVLHEGFY-FANGIALSKNEDFVVVCESW--------KFR 213 (355)
Q Consensus 143 G~ly~~d~~~~~~~~~~~~~~~~~~~~g~l~~~dp~~~~~~~~~~~~~-~pngi~~~~dg~~l~v~~~~--------~~~ 213 (355)
|.||+...... .......+++|||.+++++....... ....-+..-++ .+|+..-. -..
T Consensus 390 ~~iYv~GG~~~-----------~~~~~~~v~~yd~~t~~W~~~~~~p~~r~~~~~~~~~~-~iyv~GG~~~~~~~~~~~~ 457 (534)
T PHA03098 390 NLIYVIGGISK-----------NDELLKTVECFSLNTNKWSKGSPLPISHYGGCAIYHDG-KIYVIGGISYIDNIKVYNI 457 (534)
T ss_pred CEEEEECCcCC-----------CCcccceEEEEeCCCCeeeecCCCCccccCceEEEECC-EEEEECCccCCCCCcccce
Confidence 78998643210 00113468999999999886543211 11111222344 47876521 123
Q ss_pred EEEEEeCC
Q 018474 214 CRRYWLKG 221 (355)
Q Consensus 214 i~~~~~~~ 221 (355)
+++|++..
T Consensus 458 v~~yd~~~ 465 (534)
T PHA03098 458 VESYNPVT 465 (534)
T ss_pred EEEecCCC
Confidence 88888754
No 228
>PF08553 VID27: VID27 cytoplasmic protein; InterPro: IPR013863 This entry represents fungal and plant proteins and contains many hypothetical proteins. Vid27p is a cytoplasmic protein of unknown function, possibly regulates import of fructose-1,6-bisphosphatase into Vacuolar Import and Degradation (Vid) vesicles and is not essential for proteasome-dependent degradation of fructose-1,6-bisphosphatase (FBPase) [, ].
Probab=93.96 E-value=2.2 Score=43.85 Aligned_cols=150 Identities=13% Similarity=0.140 Sum_probs=91.5
Q ss_pred CCCCCCceEEEeeCCCeEEEEec--CCEEEEEEcCCCee-EEeeccCCC-cccCeEECC------CCCEEEEeCCCcEEE
Q 018474 49 GCVNHPEDVSVVVSKGALYTATR--DGWVKYFILHNETL-VNWKHIDSQ-SLLGLTTTK------DGGVILCDNEKGLLK 118 (355)
Q Consensus 49 ~~~~~p~~i~~d~~~g~l~~~~~--~g~i~~~~~~~g~~-~~~~~~~~~-p~~gl~~d~------~g~L~v~~~~~gl~~ 118 (355)
|....|..+..+..+..+.+-+. ...|+++|.+.|++ ..|...... .. .++-+. ...-|+|-..+++++
T Consensus 478 g~~~~P~k~mL~~~d~~mil~~~~~~~~ly~mDLe~GKVV~eW~~~~~~~v~-~~~p~~K~aqlt~e~tflGls~n~lfr 556 (794)
T PF08553_consen 478 GKNFTPKKAMLHDQDRNMILLDPNNPNKLYKMDLERGKVVEEWKVHDDIPVV-DIAPDSKFAQLTNEQTFLGLSDNSLFR 556 (794)
T ss_pred CcccCcchhhhhccccceEeecCCCCCceEEEecCCCcEEEEeecCCCccee-EecccccccccCCCceEEEECCCceEE
Confidence 44456777777655666665543 47899999999975 455332222 22 333321 235788888889999
Q ss_pred EcC--CCeEEEcC---Cc---CCcccEEEccCCcEEEEeCCCCCCCccccccccccCCCCeEEEEeCCCCeEEEeecccc
Q 018474 119 VTE--EGVEAIVP---DA---SFTNDVIAASDGTLYFTVASTKYTPTDFYKDMAEGKPYGQLRKYDPKLKETTVLHEGFY 190 (355)
Q Consensus 119 ~~~--~g~~~~~~---~~---~~~~~l~~d~dG~ly~~d~~~~~~~~~~~~~~~~~~~~g~l~~~dp~~~~~~~~~~~~~ 190 (355)
+|+ .|-+.+.. .. ..-.+++-+.+|.|-+++. .|.|-.||.-+...++..+++.
T Consensus 557 iDpR~~~~k~v~~~~k~Y~~~~~Fs~~aTt~~G~iavgs~------------------~G~IRLyd~~g~~AKT~lp~lG 618 (794)
T PF08553_consen 557 IDPRLSGNKLVDSQSKQYSSKNNFSCFATTEDGYIAVGSN------------------KGDIRLYDRLGKRAKTALPGLG 618 (794)
T ss_pred eccCCCCCceeeccccccccCCCceEEEecCCceEEEEeC------------------CCcEEeecccchhhhhcCCCCC
Confidence 994 44111111 11 4455677778888888753 3556667754444445555655
Q ss_pred cc-ccEEEeCCCCEEEEEeCCCCeEEEEEe
Q 018474 191 FA-NGIALSKNEDFVVVCESWKFRCRRYWL 219 (355)
Q Consensus 191 ~p-ngi~~~~dg~~l~v~~~~~~~i~~~~~ 219 (355)
.| -||.++.||++++.+ ....|..++.
T Consensus 619 ~pI~~iDvt~DGkwilaT--c~tyLlLi~t 646 (794)
T PF08553_consen 619 DPIIGIDVTADGKWILAT--CKTYLLLIDT 646 (794)
T ss_pred CCeeEEEecCCCcEEEEe--ecceEEEEEE
Confidence 55 689999999966554 3456766664
No 229
>KOG0308 consensus Conserved WD40 repeat-containing protein [Function unknown]
Probab=93.92 E-value=3.4 Score=40.70 Aligned_cols=149 Identities=12% Similarity=0.073 Sum_probs=82.0
Q ss_pred CceEEEeeCCCeEEE-EecCCEEEEEEcCCCeeEEee--------ccC----CCcccCeEECCCCCEEEEeCCCcEEEE-
Q 018474 54 PEDVSVVVSKGALYT-ATRDGWVKYFILHNETLVNWK--------HID----SQSLLGLTTTKDGGVILCDNEKGLLKV- 119 (355)
Q Consensus 54 p~~i~~d~~~g~l~~-~~~~g~i~~~~~~~g~~~~~~--------~~~----~~p~~gl~~d~~g~L~v~~~~~gl~~~- 119 (355)
-.+++.-.++..+++ |.-+++|+.+|..+|..+... ... ...+ +++....|.++|+....+.+++
T Consensus 120 Vkcla~~ak~~~lvaSgGLD~~IflWDin~~~~~l~~s~n~~t~~sl~sG~k~siY-SLA~N~t~t~ivsGgtek~lr~w 198 (735)
T KOG0308|consen 120 VKCLAYIAKNNELVASGGLDRKIFLWDINTGTATLVASFNNVTVNSLGSGPKDSIY-SLAMNQTGTIIVSGGTEKDLRLW 198 (735)
T ss_pred heeeeecccCceeEEecCCCccEEEEEccCcchhhhhhccccccccCCCCCcccee-eeecCCcceEEEecCcccceEEe
Confidence 345555324555554 445899999998777332111 011 1356 6777778888887655565555
Q ss_pred cC-CC--eEEEcCCcCCcccEEEccCCcEEEEeCCCCCCCccccccccccCCCCeEEEEeCCCC-eEEEeeccccccccE
Q 018474 120 TE-EG--VEAIVPDASFTNDVIAASDGTLYFTVASTKYTPTDFYKDMAEGKPYGQLRKYDPKLK-ETTVLHEGFYFANGI 195 (355)
Q Consensus 120 ~~-~g--~~~~~~~~~~~~~l~~d~dG~ly~~d~~~~~~~~~~~~~~~~~~~~g~l~~~dp~~~-~~~~~~~~~~~pngi 195 (355)
++ ++ +-.+......+..+.+++||+-.++.++ .|.+-.||.... -+..+.-.-...-.+
T Consensus 199 Dprt~~kimkLrGHTdNVr~ll~~dDGt~~ls~sS-----------------DgtIrlWdLgqQrCl~T~~vH~e~VWaL 261 (735)
T KOG0308|consen 199 DPRTCKKIMKLRGHTDNVRVLLVNDDGTRLLSASS-----------------DGTIRLWDLGQQRCLATYIVHKEGVWAL 261 (735)
T ss_pred ccccccceeeeeccccceEEEEEcCCCCeEeecCC-----------------CceEEeeeccccceeeeEEeccCceEEE
Confidence 44 54 3333344467899999999976666554 445555554211 111111000011223
Q ss_pred EEeCCCCEEEEEeCCCCeEEEEEeCC
Q 018474 196 ALSKNEDFVVVCESWKFRCRRYWLKG 221 (355)
Q Consensus 196 ~~~~dg~~l~v~~~~~~~i~~~~~~~ 221 (355)
..+++=..+|..+. .+.|++-++..
T Consensus 262 ~~~~sf~~vYsG~r-d~~i~~Tdl~n 286 (735)
T KOG0308|consen 262 QSSPSFTHVYSGGR-DGNIYRTDLRN 286 (735)
T ss_pred eeCCCcceEEecCC-CCcEEecccCC
Confidence 44455556666654 46788877754
No 230
>TIGR02276 beta_rpt_yvtn 40-residue YVTN family beta-propeller repeat. This repeat of about 40 amino acids is found in up to 14 copies per protein. Archaea Methanosarcina mazei and Methanosarcina acetivorans each have over 10 genes that encode tandem copies of this repeat, which is also found in other species. PSIPRED predicts with high confidence that each 40-residue repeats contains four beta strands. This model overlaps somewhat with the NHL repeat (Pfam pfam01436) and also shows sequence similarity to the WD domain, G-beta repeat (Pfam pfam00400).
Probab=93.90 E-value=0.31 Score=29.53 Aligned_cols=40 Identities=23% Similarity=0.246 Sum_probs=28.1
Q ss_pred CC-cEEEEeCCCCCCCccccccccccCCCCeEEEEeCCCCeEEEeeccccccccEEEe
Q 018474 142 DG-TLYFTVASTKYTPTDFYKDMAEGKPYGQLRKYDPKLKETTVLHEGFYFANGIALS 198 (355)
Q Consensus 142 dG-~ly~~d~~~~~~~~~~~~~~~~~~~~g~l~~~dp~~~~~~~~~~~~~~pngi~~~ 198 (355)
+| .||+++.. .+.+..+|+.+++..........|.+++++
T Consensus 2 d~~~lyv~~~~-----------------~~~v~~id~~~~~~~~~i~vg~~P~~i~~~ 42 (42)
T TIGR02276 2 DGTKLYVTNSG-----------------SNTVSVIDTATNKVIATIPVGGYPFGVAVS 42 (42)
T ss_pred CCCEEEEEeCC-----------------CCEEEEEECCCCeEEEEEECCCCCceEEeC
Confidence 44 69998755 567888999877665444445678888764
No 231
>KOG0292 consensus Vesicle coat complex COPI, alpha subunit [Intracellular trafficking, secretion, and vesicular transport]
Probab=93.87 E-value=9 Score=39.47 Aligned_cols=131 Identities=13% Similarity=0.238 Sum_probs=79.3
Q ss_pred CCCCCCceEEEeeCCCeEEEEecCCEEEEEEcCCCe-eEEeeccCCCcccCeEECCCCCEEEEeCCCcEEEEcCCCeEEE
Q 018474 49 GCVNHPEDVSVVVSKGALYTATRDGWVKYFILHNET-LVNWKHIDSQSLLGLTTTKDGGVILCDNEKGLLKVTEEGVEAI 127 (355)
Q Consensus 49 ~~~~~p~~i~~d~~~g~l~~~~~~g~i~~~~~~~g~-~~~~~~~~~~p~~gl~~d~~g~L~v~~~~~gl~~~~~~g~~~~ 127 (355)
|....-.++.++|..+.+...++|+.|..+|....+ .+.+.....+-. .++..+..+||.+.+..|...+--+.
T Consensus 248 gH~nnVssvlfhp~q~lIlSnsEDksirVwDm~kRt~v~tfrrendRFW-~laahP~lNLfAAgHDsGm~VFkleR---- 322 (1202)
T KOG0292|consen 248 GHYNNVSSVLFHPHQDLILSNSEDKSIRVWDMTKRTSVQTFRRENDRFW-ILAAHPELNLFAAGHDSGMIVFKLER---- 322 (1202)
T ss_pred cccCCcceEEecCccceeEecCCCccEEEEecccccceeeeeccCCeEE-EEEecCCcceeeeecCCceEEEEEcc----
Confidence 556667888999767777777789999999884433 345555566677 78888999999998887755543110
Q ss_pred cCCcCCcccEEEccCCcEEEEeCCCCCCCccccccccccCCCCeEEEEeCCCCeEEEee--ccc----cccccEEEeCCC
Q 018474 128 VPDASFTNDVIAASDGTLYFTVASTKYTPTDFYKDMAEGKPYGQLRKYDPKLKETTVLH--EGF----YFANGIALSKNE 201 (355)
Q Consensus 128 ~~~~~~~~~l~~d~dG~ly~~d~~~~~~~~~~~~~~~~~~~~g~l~~~dp~~~~~~~~~--~~~----~~pngi~~~~dg 201 (355)
..-..++..++-+|+-+. .++.||-.+.+-..+. ... .-|..+...|.+
T Consensus 323 -----Erpa~~v~~n~LfYvkd~--------------------~i~~~d~~t~~d~~v~~lr~~g~~~~~~~smsYNpae 377 (1202)
T KOG0292|consen 323 -----ERPAYAVNGNGLFYVKDR--------------------FIRSYDLRTQKDTAVASLRRPGTLWQPPRSLSYNPAE 377 (1202)
T ss_pred -----cCceEEEcCCEEEEEccc--------------------eEEeeeccccccceeEeccCCCcccCCcceeeecccc
Confidence 111234444444555421 4666665443222221 111 224567788887
Q ss_pred CEEEEEeC
Q 018474 202 DFVVVCES 209 (355)
Q Consensus 202 ~~l~v~~~ 209 (355)
+.+.++..
T Consensus 378 ~~vlics~ 385 (1202)
T KOG0292|consen 378 NAVLICSN 385 (1202)
T ss_pred CeEEEEec
Confidence 77777743
No 232
>COG0823 TolB Periplasmic component of the Tol biopolymer transport system [Intracellular trafficking and secretion]
Probab=93.82 E-value=6.5 Score=37.71 Aligned_cols=120 Identities=20% Similarity=0.191 Sum_probs=65.9
Q ss_pred EEEEc-CCC-eEEEcCCcCCcccEEEccCC-cEEEEeCCCCCCCccccccccccCCCCeEEEEeCCCCeEEEeecccccc
Q 018474 116 LLKVT-EEG-VEAIVPDASFTNDVIAASDG-TLYFTVASTKYTPTDFYKDMAEGKPYGQLRKYDPKLKETTVLHEGFYFA 192 (355)
Q Consensus 116 l~~~~-~~g-~~~~~~~~~~~~~l~~d~dG-~ly~~d~~~~~~~~~~~~~~~~~~~~g~l~~~dp~~~~~~~~~~~~~~p 192 (355)
++.++ .+| ...+......-..-.+.||| +|-|+... ...-.+|.+|..++....+.+.....
T Consensus 220 i~~~~l~~g~~~~i~~~~g~~~~P~fspDG~~l~f~~~r---------------dg~~~iy~~dl~~~~~~~Lt~~~gi~ 284 (425)
T COG0823 220 IYYLDLNTGKRPVILNFNGNNGAPAFSPDGSKLAFSSSR---------------DGSPDIYLMDLDGKNLPRLTNGFGIN 284 (425)
T ss_pred EEEEeccCCccceeeccCCccCCccCCCCCCEEEEEECC---------------CCCccEEEEcCCCCcceecccCCccc
Confidence 66666 345 33333321222334677888 45565433 11336899998877755543332222
Q ss_pred ccEEEeCCCCEEEEEeCCCC--eEEEEEeCCCCCcceeEecccCCCCcCceEECCCCCEEEEee
Q 018474 193 NGIALSKNEDFVVVCESWKF--RCRRYWLKGDRAGILDAFIENLPGGPDNINLAPDGSFWIGLI 254 (355)
Q Consensus 193 ngi~~~~dg~~l~v~~~~~~--~i~~~~~~~~~~~~~~~~~~~~~g~p~~i~~d~~G~lwv~~~ 254 (355)
..=.++|||+.++++....+ .|++++.++...... ++ .. +....-..++||+..+-..
T Consensus 285 ~~Ps~spdG~~ivf~Sdr~G~p~I~~~~~~g~~~~ri-T~--~~-~~~~~p~~SpdG~~i~~~~ 344 (425)
T COG0823 285 TSPSWSPDGSKIVFTSDRGGRPQIYLYDLEGSQVTRL-TF--SG-GGNSNPVWSPDGDKIVFES 344 (425)
T ss_pred cCccCCCCCCEEEEEeCCCCCcceEEECCCCCceeEe-ec--cC-CCCcCccCCCCCCEEEEEe
Confidence 23368999998888765433 578888776533111 11 11 1122345678887666655
No 233
>PF14517 Tachylectin: Tachylectin; PDB: 1TL2_A.
Probab=93.75 E-value=3.7 Score=35.52 Aligned_cols=155 Identities=16% Similarity=0.099 Sum_probs=79.3
Q ss_pred cCceEecCCCCCCCceEEEeeCCCeEEEEecCCEEEEEEcC-CC------eeEEeeccC-CCcccCeEECCCCCEEEEeC
Q 018474 41 KGLTKLGEGCVNHPEDVSVVVSKGALYTATRDGWVKYFILH-NE------TLVNWKHID-SQSLLGLTTTKDGGVILCDN 112 (355)
Q Consensus 41 ~~~~~~~~~~~~~p~~i~~d~~~g~l~~~~~~g~i~~~~~~-~g------~~~~~~~~~-~~p~~gl~~d~~g~L~v~~~ 112 (355)
..+.++..+ ...-..|+.. .++.||....+ .+++..+. ++ ..+++...+ ++=. .|.+|+.|-||..+.
T Consensus 24 ~~a~~iG~g-w~~~~~i~~~-P~g~lY~I~~~-~lY~~~~~~~~~~~~~~~~~~Ig~g~W~~F~-~i~~d~~G~LYaV~~ 99 (229)
T PF14517_consen 24 DRAITIGSG-WNNFRDIAAG-PNGRLYAIRND-GLYRGSPSSSGGNTWDSGSKQIGDGGWNSFK-FIFFDPTGVLYAVTP 99 (229)
T ss_dssp HHSEEEESS--TT-SEEEE--TTS-EEEEETT-EEEEES---STT--HHHH-EEEE-S-GGG-S-EEEE-TTS-EEEEET
T ss_pred chhhhcCcc-ccccceEEEc-CCceEEEEECC-ceEEecCCccCcccccccCcccccCccccee-EEEecCCccEEEecc
Confidence 345677664 4667778888 68889987755 68887321 22 112322211 1223 688999999999887
Q ss_pred CCcEEEEc-C-CC-e-------EEEc-CCcCCcccEEEccCCcEEEEeCCCCCCCccccccccccCCCCeEEEE-eCCCC
Q 018474 113 EKGLLKVT-E-EG-V-------EAIV-PDASFTNDVIAASDGTLYFTVASTKYTPTDFYKDMAEGKPYGQLRKY-DPKLK 180 (355)
Q Consensus 113 ~~gl~~~~-~-~g-~-------~~~~-~~~~~~~~l~~d~dG~ly~~d~~~~~~~~~~~~~~~~~~~~g~l~~~-dp~~~ 180 (355)
.+.+++.. + ++ . +.+. ..-+....+..+++|.||.-+.. +.+++. .|...
T Consensus 100 ~G~lyR~~~~~~~~~~W~~~~~~~iG~~GW~~f~~vfa~~~GvLY~i~~d------------------g~~~~~~~p~~~ 161 (229)
T PF14517_consen 100 DGKLYRHPRPTNGSDNWIGGSGKKIGGTGWNDFDAVFAGPNGVLYAITPD------------------GRLYRRYRPDGG 161 (229)
T ss_dssp T-EEEEES---STT--HHH-HSEEEE-SSGGGEEEEEE-TTS-EEEEETT------------------E-EEEE---SST
T ss_pred ccceeeccCCCccCcchhhccceecccCCCccceEEEeCCCccEEEEcCC------------------CceEEeCCCCCC
Confidence 76788887 2 32 1 3332 22255677889999999987643 356666 44333
Q ss_pred eEE-----Ee-e-ccccccccEEEeCCCCEEEEEeCCCCeEEEEEe
Q 018474 181 ETT-----VL-H-EGFYFANGIALSKNEDFVVVCESWKFRCRRYWL 219 (355)
Q Consensus 181 ~~~-----~~-~-~~~~~pngi~~~~dg~~l~v~~~~~~~i~~~~~ 219 (355)
.-+ .+ . .+-....-|.+++++. ||... ..+.|+|+..
T Consensus 162 ~~~W~~~s~~v~~~gw~~~~~i~~~~~g~-L~~V~-~~G~lyr~~~ 205 (229)
T PF14517_consen 162 SDRWLSGSGLVGGGGWDSFHFIFFSPDGN-LWAVK-SNGKLYRGRP 205 (229)
T ss_dssp T--HHHH-EEEESSSGGGEEEEEE-TTS--EEEE--ETTEEEEES-
T ss_pred CCccccccceeccCCcccceEEeeCCCCc-EEEEe-cCCEEeccCC
Confidence 211 11 1 1222345678888886 66664 4567776653
No 234
>PHA02790 Kelch-like protein; Provisional
Probab=93.62 E-value=3.4 Score=40.37 Aligned_cols=123 Identities=7% Similarity=0.026 Sum_probs=65.9
Q ss_pred CCeEEEEec---CCEEEEEEcCCCeeEEeeccCC-CcccCeEECCCCCEEEEeCCC----cEEEEcC-CC-eEEEcCCc-
Q 018474 63 KGALYTATR---DGWVKYFILHNETLVNWKHIDS-QSLLGLTTTKDGGVILCDNEK----GLLKVTE-EG-VEAIVPDA- 131 (355)
Q Consensus 63 ~g~l~~~~~---~g~i~~~~~~~g~~~~~~~~~~-~p~~gl~~d~~g~L~v~~~~~----gl~~~~~-~g-~~~~~~~~- 131 (355)
++.+|+... ...+.++++.+++|........ +..-+.+ --+|+||+..... .+.++++ +. -+..+...
T Consensus 318 ~~~iYviGG~~~~~sve~ydp~~n~W~~~~~l~~~r~~~~~~-~~~g~IYviGG~~~~~~~ve~ydp~~~~W~~~~~m~~ 396 (480)
T PHA02790 318 NNKLYVVGGLPNPTSVERWFHGDAAWVNMPSLLKPRCNPAVA-SINNVIYVIGGHSETDTTTEYLLPNHDQWQFGPSTYY 396 (480)
T ss_pred CCEEEEECCcCCCCceEEEECCCCeEEECCCCCCCCcccEEE-EECCEEEEecCcCCCCccEEEEeCCCCEEEeCCCCCC
Confidence 567776322 2347788888888776543321 1110222 2478999964321 2556775 44 44433221
Q ss_pred CCcccEEEccCCcEEEEeCCCCCCCccccccccccCCCCeEEEEeCCCCeEEEeeccc--cccccEEEeCCCCEEEEEe
Q 018474 132 SFTNDVIAASDGTLYFTVASTKYTPTDFYKDMAEGKPYGQLRKYDPKLKETTVLHEGF--YFANGIALSKNEDFVVVCE 208 (355)
Q Consensus 132 ~~~~~l~~d~dG~ly~~d~~~~~~~~~~~~~~~~~~~~g~l~~~dp~~~~~~~~~~~~--~~pngi~~~~dg~~l~v~~ 208 (355)
......++.-+|.||+.. |...+|||++++++.+..-. ..-.+++.- +++ +|+..
T Consensus 397 ~r~~~~~~~~~~~IYv~G--------------------G~~e~ydp~~~~W~~~~~m~~~r~~~~~~v~-~~~-IYviG 453 (480)
T PHA02790 397 PHYKSCALVFGRRLFLVG--------------------RNAEFYCESSNTWTLIDDPIYPRDNPELIIV-DNK-LLLIG 453 (480)
T ss_pred ccccceEEEECCEEEEEC--------------------CceEEecCCCCcEeEcCCCCCCccccEEEEE-CCE-EEEEC
Confidence 111222334568899862 34678999999998765321 112344443 443 77765
No 235
>KOG2048 consensus WD40 repeat protein [General function prediction only]
Probab=93.60 E-value=8.3 Score=38.21 Aligned_cols=150 Identities=10% Similarity=0.036 Sum_probs=87.6
Q ss_pred CCCCCCceEEEeeCCCeEEEEecCCEEEEEEcCCCeeEEe-eccCCCcccCeEECCCCC-EEEEeCCCcEEEEc-CCC-e
Q 018474 49 GCVNHPEDVSVVVSKGALYTATRDGWVKYFILHNETLVNW-KHIDSQSLLGLTTTKDGG-VILCDNEKGLLKVT-EEG-V 124 (355)
Q Consensus 49 ~~~~~p~~i~~d~~~g~l~~~~~~g~i~~~~~~~g~~~~~-~~~~~~p~~gl~~d~~g~-L~v~~~~~gl~~~~-~~g-~ 124 (355)
+.-..-|+|+|. ++++||....+|.|..+|+.+++.+.- ...++.+. .|+..+.+. +-|+...+-++.++ ..+ +
T Consensus 67 ~~drsIE~L~W~-e~~RLFS~g~sg~i~EwDl~~lk~~~~~d~~gg~IW-siai~p~~~~l~IgcddGvl~~~s~~p~~I 144 (691)
T KOG2048|consen 67 PEDRSIESLAWA-EGGRLFSSGLSGSITEWDLHTLKQKYNIDSNGGAIW-SIAINPENTILAIGCDDGVLYDFSIGPDKI 144 (691)
T ss_pred CCCCceeeEEEc-cCCeEEeecCCceEEEEecccCceeEEecCCCccee-EEEeCCccceEEeecCCceEEEEecCCceE
Confidence 445678999999 899999999999999999988865543 33456678 888876665 55653332233333 233 2
Q ss_pred --EEEcCCc-CCcccEEEccCCcEEEEeCCCCCCCccccccccccCCCCeEEEEeCCCCeEEEee----ccccc-cc---
Q 018474 125 --EAIVPDA-SFTNDVIAASDGTLYFTVASTKYTPTDFYKDMAEGKPYGQLRKYDPKLKETTVLH----EGFYF-AN--- 193 (355)
Q Consensus 125 --~~~~~~~-~~~~~l~~d~dG~ly~~d~~~~~~~~~~~~~~~~~~~~g~l~~~dp~~~~~~~~~----~~~~~-pn--- 193 (355)
++.-... ..+-++..+++|.=.++. ...|.+-.||..++..-.+. .++.. -+
T Consensus 145 ~~~r~l~rq~sRvLslsw~~~~~~i~~G-----------------s~Dg~Iriwd~~~~~t~~~~~~~~d~l~k~~~~iV 207 (691)
T KOG2048|consen 145 TYKRSLMRQKSRVLSLSWNPTGTKIAGG-----------------SIDGVIRIWDVKSGQTLHIITMQLDRLSKREPTIV 207 (691)
T ss_pred EEEeecccccceEEEEEecCCccEEEec-----------------ccCceEEEEEcCCCceEEEeeecccccccCCceEE
Confidence 2222222 567777888888633332 22445777777665432211 12221 22
Q ss_pred -cEEEeCCCCEEEEEeCCCCeEEEEEe
Q 018474 194 -GIALSKNEDFVVVCESWKFRCRRYWL 219 (355)
Q Consensus 194 -gi~~~~dg~~l~v~~~~~~~i~~~~~ 219 (355)
++.+-.|+ .+++....+.|..+|.
T Consensus 208 WSv~~Lrd~--tI~sgDS~G~V~FWd~ 232 (691)
T KOG2048|consen 208 WSVLFLRDS--TIASGDSAGTVTFWDS 232 (691)
T ss_pred EEEEEeecC--cEEEecCCceEEEEcc
Confidence 33344554 3444445566666664
No 236
>TIGR02276 beta_rpt_yvtn 40-residue YVTN family beta-propeller repeat. This repeat of about 40 amino acids is found in up to 14 copies per protein. Archaea Methanosarcina mazei and Methanosarcina acetivorans each have over 10 genes that encode tandem copies of this repeat, which is also found in other species. PSIPRED predicts with high confidence that each 40-residue repeats contains four beta strands. This model overlaps somewhat with the NHL repeat (Pfam pfam01436) and also shows sequence similarity to the WD domain, G-beta repeat (Pfam pfam00400).
Probab=93.49 E-value=0.43 Score=28.87 Aligned_cols=41 Identities=10% Similarity=0.148 Sum_probs=30.6
Q ss_pred eCCCeEEEEec-CCEEEEEEcCCCeeEEeeccCCCcccCeEEC
Q 018474 61 VSKGALYTATR-DGWVKYFILHNETLVNWKHIDSQSLLGLTTT 102 (355)
Q Consensus 61 ~~~g~l~~~~~-~g~i~~~~~~~g~~~~~~~~~~~p~~gl~~d 102 (355)
|+++.||+++. .+.|..+|..+++...-...+..|. +|+++
T Consensus 1 pd~~~lyv~~~~~~~v~~id~~~~~~~~~i~vg~~P~-~i~~~ 42 (42)
T TIGR02276 1 PDGTKLYVTNSGSNTVSVIDTATNKVIATIPVGGYPF-GVAVS 42 (42)
T ss_pred CCCCEEEEEeCCCCEEEEEECCCCeEEEEEECCCCCc-eEEeC
Confidence 35778999875 6889999998887665555566788 87764
No 237
>KOG2321 consensus WD40 repeat protein [General function prediction only]
Probab=93.41 E-value=5.2 Score=38.95 Aligned_cols=105 Identities=14% Similarity=0.141 Sum_probs=62.6
Q ss_pred eEEC-CCCCEEEEeCCCcEEEEc-CCC--eEEEcCCcCCcccEEEccCCcEEEEeCCCCCCCccccccccccCCCCeEEE
Q 018474 99 LTTT-KDGGVILCDNEKGLLKVT-EEG--VEAIVPDASFTNDVIAASDGTLYFTVASTKYTPTDFYKDMAEGKPYGQLRK 174 (355)
Q Consensus 99 l~~d-~~g~L~v~~~~~gl~~~~-~~g--~~~~~~~~~~~~~l~~d~dG~ly~~d~~~~~~~~~~~~~~~~~~~~g~l~~ 174 (355)
|+.+ +.-.||++..+..+||++ ..| +..+......+|.+.+.+-..|..+ |+..|.+-.
T Consensus 139 m~y~~~scDly~~gsg~evYRlNLEqGrfL~P~~~~~~~lN~v~in~~hgLla~-----------------Gt~~g~VEf 201 (703)
T KOG2321|consen 139 MKYHKPSCDLYLVGSGSEVYRLNLEQGRFLNPFETDSGELNVVSINEEHGLLAC-----------------GTEDGVVEF 201 (703)
T ss_pred ccccCCCccEEEeecCcceEEEEccccccccccccccccceeeeecCccceEEe-----------------cccCceEEE
Confidence 4444 334688888788899999 466 5544433345666666654444443 333567778
Q ss_pred EeCCCCeEEEee----c--------cccccccEEEeCCCCEEEEEeCCCCeEEEEEeCC
Q 018474 175 YDPKLKETTVLH----E--------GFYFANGIALSKNEDFVVVCESWKFRCRRYWLKG 221 (355)
Q Consensus 175 ~dp~~~~~~~~~----~--------~~~~pngi~~~~dg~~l~v~~~~~~~i~~~~~~~ 221 (355)
|||.+++..-.. . ....+..+.|+.||-.+ -+.+..+.++.||+..
T Consensus 202 wDpR~ksrv~~l~~~~~v~s~pg~~~~~svTal~F~d~gL~~-aVGts~G~v~iyDLRa 259 (703)
T KOG2321|consen 202 WDPRDKSRVGTLDAASSVNSHPGGDAAPSVTALKFRDDGLHV-AVGTSTGSVLIYDLRA 259 (703)
T ss_pred ecchhhhhheeeecccccCCCccccccCcceEEEecCCceeE-EeeccCCcEEEEEccc
Confidence 888766432111 1 01124567787777543 4456678899999854
No 238
>KOG0288 consensus WD40 repeat protein TipD [General function prediction only]
Probab=93.39 E-value=6.6 Score=36.63 Aligned_cols=195 Identities=15% Similarity=0.117 Sum_probs=92.5
Q ss_pred ceEEEeeCCCeEEEEecCCEEEEEEcCCCeeEEe---eccCCCcccCeEECCCCCEEEEeCCCc---EEEEcCCC-eEEE
Q 018474 55 EDVSVVVSKGALYTATRDGWVKYFILHNETLVNW---KHIDSQSLLGLTTTKDGGVILCDNEKG---LLKVTEEG-VEAI 127 (355)
Q Consensus 55 ~~i~~d~~~g~l~~~~~~g~i~~~~~~~g~~~~~---~~~~~~p~~gl~~d~~g~L~v~~~~~g---l~~~~~~g-~~~~ 127 (355)
..+.+-+..+.|..+..+..|..++...++.... ....+... .+.+|++++-.++..+++ ++.++... .+++
T Consensus 179 ~~v~~l~~sdtlatgg~Dr~Ik~W~v~~~k~~~~~tLaGs~g~it-~~d~d~~~~~~iAas~d~~~r~Wnvd~~r~~~TL 257 (459)
T KOG0288|consen 179 HDVEFLRNSDTLATGGSDRIIKLWNVLGEKSELISTLAGSLGNIT-SIDFDSDNKHVIAASNDKNLRLWNVDSLRLRHTL 257 (459)
T ss_pred ceeEEccCcchhhhcchhhhhhhhhcccchhhhhhhhhccCCCcc-eeeecCCCceEEeecCCCceeeeeccchhhhhhh
Confidence 4455554447788877777777666544442222 11234566 899999998777665555 33333111 2222
Q ss_pred cCCc--------CCcccEEEcc--CCc--EE------EEeCCCC-CCCccc---cccccccCCCCeEEEEeCCCCeEEEe
Q 018474 128 VPDA--------SFTNDVIAAS--DGT--LY------FTVASTK-YTPTDF---YKDMAEGKPYGQLRKYDPKLKETTVL 185 (355)
Q Consensus 128 ~~~~--------~~~~~l~~d~--dG~--ly------~~d~~~~-~~~~~~---~~~~~~~~~~g~l~~~dp~~~~~~~~ 185 (355)
.... ..-+.-+++. |-+ +| .+.+--. -.+.+. ...++.+-....+-.||-.+...+.-
T Consensus 258 sGHtdkVt~ak~~~~~~~vVsgs~DRtiK~WDl~k~~C~kt~l~~S~cnDI~~~~~~~~SgH~DkkvRfwD~Rs~~~~~s 337 (459)
T KOG0288|consen 258 SGHTDKVTAAKFKLSHSRVVSGSADRTIKLWDLQKAYCSKTVLPGSQCNDIVCSISDVISGHFDKKVRFWDIRSADKTRS 337 (459)
T ss_pred cccccceeeehhhccccceeeccccchhhhhhhhhhheeccccccccccceEecceeeeecccccceEEEeccCCceeeE
Confidence 2111 0001102221 111 11 1110000 000000 11122222234566677555544433
Q ss_pred eccccccccEEEeCCCCEEEEEeCCCCeEEEEEeCCCCCcceeEec-ccCCCC--cCceEECCCCCEEEEe
Q 018474 186 HEGFYFANGIALSKNEDFVVVCESWKFRCRRYWLKGDRAGILDAFI-ENLPGG--PDNINLAPDGSFWIGL 253 (355)
Q Consensus 186 ~~~~~~pngi~~~~dg~~l~v~~~~~~~i~~~~~~~~~~~~~~~~~-~~~~g~--p~~i~~d~~G~lwv~~ 253 (355)
.+....-..+.++.+|..+..+ +..+.+..+++.+..+ ...|- ++.-.- -.-.+++++|.|..+.
T Consensus 338 v~~gg~vtSl~ls~~g~~lLss-sRDdtl~viDlRt~eI--~~~~sA~g~k~asDwtrvvfSpd~~YvaAG 405 (459)
T KOG0288|consen 338 VPLGGRVTSLDLSMDGLELLSS-SRDDTLKVIDLRTKEI--RQTFSAEGFKCASDWTRVVFSPDGSYVAAG 405 (459)
T ss_pred eecCcceeeEeeccCCeEEeee-cCCCceeeeecccccE--EEEeeccccccccccceeEECCCCceeeec
Confidence 3344455678889999888777 5667888888765432 22221 111100 1225688877654443
No 239
>PF00058 Ldl_recept_b: Low-density lipoprotein receptor repeat class B; InterPro: IPR000033 The low-density lipoprotein receptor (LDLR) is the major cholesterol-carrying lipoprotein of plasma, acting to regulate cholesterol homeostasis in mammalian cells. The LDL receptor binds LDL and transports it into cells by acidic endocytosis. In order to be internalized, the receptor-ligand complex must first cluster into clathrin-coated pits. Once inside the cell, the LDLR separates from its ligand, which is degraded in the lysosomes, while the receptor returns to the cell surface []. The internal dissociation of the LDLR with its ligand is mediated by proton pumps within the walls of the endosome that lower the pH. The LDLR is a multi-domain protein, containing: The ligand-binding domain contains seven or eight 40-amino acid LDLR class A (cysteine-rich) repeats, each of which contains a coordinated calcium ion and six cysteine residues involved in disulphide bond formation []. Similar domains have been found in other extracellular and membrane proteins []. The second conserved region contains two EGF repeats, followed by six LDLR class B (YWTD) repeats, and another EGF repeat. The LDLR class B repeats each contain a conserved YWTD motif, and is predicted to form a beta-propeller structure []. This region is critical for ligand release and recycling of the receptor []. The third domain is rich in serine and threonine residues and contains clustered O-linked carbohydrate chains. The fourth domain is the hydrophobic transmembrane region. The fifth domain is the cytoplasmic tail that directs the receptor to clathrin-coated pits. LDLR is closely related in structure to several other receptors, including LRP1, LRP1b, megalin/LRP2, VLDL receptor, lipoprotein receptor, MEGF7/LRP4, and LRP8/apolipoprotein E receptor2); these proteins participate in a wide range of physiological processes, including the regulation of lipid metabolism, protection against atherosclerosis, neurodevelopment, and transport of nutrients and vitamins []. This entry represents the LDLR classB (YWTD) repeat, the structure of which has been solved []. The six YWTD repeats together fold into a six-bladed beta-propeller. Each blade of the propeller consists of four antiparallel beta-strands; the innermost strand of each blade is labeled 1 and the outermost strand, 4. The sequence repeats are offset with respect to the blades of the propeller, such that any given 40-residue YWTD repeat spans strands 24 of one propeller blade and strand 1 of the subsequent blade. This offset ensures circularization of the propeller because the last strand of the final sequence repeat acts as an innermost strand 1 of the blade that harbors strands 24 from the first sequence repeat. The repeat is found in a variety of proteins that include, vitellogenin receptor from Drosophila melanogaster, low-density lipoprotein (LDL) receptor [], preproepidermal growth factor, and nidogen (entactin).; PDB: 3S2K_A 3S8Z_A 3S8V_B 4A0P_A 3SOB_B 3S94_B 4DG6_A 3SOV_A 3SOQ_A 1NPE_A ....
Probab=93.20 E-value=0.44 Score=29.26 Aligned_cols=40 Identities=20% Similarity=0.335 Sum_probs=28.1
Q ss_pred CcEEEEeCCCCCCCccccccccccCCCC-eEEEEeCCCCeEE-EeeccccccccEEEeC
Q 018474 143 GTLYFTVASTKYTPTDFYKDMAEGKPYG-QLRKYDPKLKETT-VLHEGFYFANGIALSK 199 (355)
Q Consensus 143 G~ly~~d~~~~~~~~~~~~~~~~~~~~g-~l~~~dp~~~~~~-~~~~~~~~pngi~~~~ 199 (355)
|+||++|.. .. .+.+-+.++...+ .+..++..|+||++++
T Consensus 1 ~~iYWtD~~-----------------~~~~I~~a~~dGs~~~~vi~~~l~~P~giaVD~ 42 (42)
T PF00058_consen 1 GKIYWTDWS-----------------QDPSIERANLDGSNRRTVISDDLQHPEGIAVDW 42 (42)
T ss_dssp TEEEEEETT-----------------TTEEEEEEETTSTSEEEEEESSTSSEEEEEEET
T ss_pred CEEEEEECC-----------------CCcEEEEEECCCCCeEEEEECCCCCcCEEEECC
Confidence 578999876 23 5666666555544 4456789999999874
No 240
>PF07494 Reg_prop: Two component regulator propeller; InterPro: IPR011110 A large group of two component regulator proteins appear to have the same N-terminal structure of 14 tandem repeats. These repeats show homology to members of IPR002372 from INTERPRO and IPR001680 from INTERPRO indicating that they are likely to form a beta-propeller. This family has been built with artificially high cut-offs in order to avoid overlaps with other beta-propeller families. The fourteen repeats are likely to form two propellers; it is not clear if these structures are likely to recruit other proteins or interact with DNA.; PDB: 3V9F_D 3VA6_B 3OTT_B 4A2M_D 4A2L_B.
Probab=93.17 E-value=0.11 Score=27.69 Aligned_cols=18 Identities=11% Similarity=0.211 Sum_probs=11.0
Q ss_pred CcccCeEECCCCCEEEEeC
Q 018474 94 QSLLGLTTTKDGGVILCDN 112 (355)
Q Consensus 94 ~p~~gl~~d~~g~L~v~~~ 112 (355)
.+. +|..|++|+||+++.
T Consensus 6 ~I~-~i~~D~~G~lWigT~ 23 (24)
T PF07494_consen 6 NIY-SIYEDSDGNLWIGTY 23 (24)
T ss_dssp CEE-EEEE-TTSCEEEEET
T ss_pred eEE-EEEEcCCcCEEEEeC
Confidence 345 667777777777663
No 241
>KOG0295 consensus WD40 repeat-containing protein [Function unknown]
Probab=93.16 E-value=6.9 Score=35.95 Aligned_cols=53 Identities=13% Similarity=0.077 Sum_probs=31.0
Q ss_pred EEeeCCCeEEEEecCCEEEEEEcCCCeeEEeecc-CCCcccCeEECCCCCEEEEe
Q 018474 58 SVVVSKGALYTATRDGWVKYFILHNETLVNWKHI-DSQSLLGLTTTKDGGVILCD 111 (355)
Q Consensus 58 ~~d~~~g~l~~~~~~g~i~~~~~~~g~~~~~~~~-~~~p~~gl~~d~~g~L~v~~ 111 (355)
.+.|..-....++.++.|..+|..+|+....... ..... .+.+|..|++.+..
T Consensus 115 ~~hp~~~~v~~as~d~tikv~D~~tg~~e~~LrGHt~sv~-di~~~a~Gk~l~tc 168 (406)
T KOG0295|consen 115 IFHPSEALVVSASEDATIKVFDTETGELERSLRGHTDSVF-DISFDASGKYLATC 168 (406)
T ss_pred eeccCceEEEEecCCceEEEEEccchhhhhhhhcccccee-EEEEecCccEEEec
Confidence 3453333444566788899999888877544322 12244 56666666555543
No 242
>TIGR03074 PQQ_membr_DH membrane-bound PQQ-dependent dehydrogenase, glucose/quinate/shikimate family. This protein family has a phylogenetic distribution very similar to that coenzyme PQQ biosynthesis enzymes, as shown by partial phylogenetic profiling. Members of this family have several predicted transmembrane helices in the N-terminal region, and include the quinoprotein glucose dehydrogenase (EC 1.1.5.2) of Escherichia coli and the quinate/shikimate dehydrogenase of Acinetobacter sp. ADP1 (EC 1.1.99.25). Sequences closely related except for the absense of the N-terminal hydrophobic region, scoring in the gray zone between the trusted and noise cutoffs, include PQQ-dependent glycerol (EC 1.1.99.22) and and other polyol (sugar alcohol) dehydrogenases.
Probab=92.89 E-value=13 Score=38.48 Aligned_cols=123 Identities=9% Similarity=0.010 Sum_probs=65.6
Q ss_pred CCeEEEEecCCEEEEEEcCCCeeEE-eec--------c-CCCcc------cCeEECCCCCEEEEeC----------CCcE
Q 018474 63 KGALYTATRDGWVKYFILHNETLVN-WKH--------I-DSQSL------LGLTTTKDGGVILCDN----------EKGL 116 (355)
Q Consensus 63 ~g~l~~~~~~g~i~~~~~~~g~~~~-~~~--------~-~~~p~------~gl~~d~~g~L~v~~~----------~~gl 116 (355)
++++|+++.+++|+.+|.++|+... +.. . +..+. +.-.+ .++.++++.. .+.+
T Consensus 260 ~~rV~~~T~Dg~LiALDA~TGk~~W~fg~~G~vdl~~~~g~~~~g~~~~ts~P~V-~~g~VIvG~~v~d~~~~~~~~G~I 338 (764)
T TIGR03074 260 ARRIILPTSDARLIALDADTGKLCEDFGNNGTVDLTAGMGTTPPGYYYPTSPPLV-AGTTVVIGGRVADNYSTDEPSGVI 338 (764)
T ss_pred CCEEEEecCCCeEEEEECCCCCEEEEecCCCceeeecccCcCCCcccccccCCEE-ECCEEEEEecccccccccCCCcEE
Confidence 4589999999999999999997542 111 0 01111 00111 2567888743 2237
Q ss_pred EEEc-CCC-eEE--EcCCc--------------CCc---ccEEEccC-CcEEEEeCCCCCCCccccccccccCCCCeEEE
Q 018474 117 LKVT-EEG-VEA--IVPDA--------------SFT---NDVIAASD-GTLYFTVASTKYTPTDFYKDMAEGKPYGQLRK 174 (355)
Q Consensus 117 ~~~~-~~g-~~~--~~~~~--------------~~~---~~l~~d~d-G~ly~~d~~~~~~~~~~~~~~~~~~~~g~l~~ 174 (355)
..+| .+| +.- ..... ..+ ...+.|++ |.+|+......-...............+.++.
T Consensus 339 ~A~Da~TGkl~W~~~~g~p~~~~~~~~g~~~~~gg~n~W~~~s~D~~~glvy~ptGn~~pd~~g~~r~~~~n~y~~slvA 418 (764)
T TIGR03074 339 RAFDVNTGALVWAWDPGNPDPTAPPAPGETYTRNTPNSWSVASYDEKLGLVYLPMGNQTPDQWGGDRTPADEKYSSSLVA 418 (764)
T ss_pred EEEECCCCcEeeEEecCCCCcccCCCCCCEeccCCCCccCceEEcCCCCeEEEeCCCccccccCCccccCcccccceEEE
Confidence 7788 477 221 11100 112 33577865 67888654321100000000112234678999
Q ss_pred EeCCCCeEEEee
Q 018474 175 YDPKLKETTVLH 186 (355)
Q Consensus 175 ~dp~~~~~~~~~ 186 (355)
.|++||+.+...
T Consensus 419 LD~~TGk~~W~~ 430 (764)
T TIGR03074 419 LDATTGKERWVF 430 (764)
T ss_pred EeCCCCceEEEe
Confidence 999999887554
No 243
>KOG1036 consensus Mitotic spindle checkpoint protein BUB3, WD repeat superfamily [Cell cycle control, cell division, chromosome partitioning]
Probab=92.71 E-value=7.2 Score=34.99 Aligned_cols=147 Identities=13% Similarity=0.083 Sum_probs=84.8
Q ss_pred CCceEEEeeCCCeEEEEecCCEEEEEEcCCCeeEEeeccCCCcccCeEECCCCCEEEEeCCCcEEEEcC-CC-eEEEcCC
Q 018474 53 HPEDVSVVVSKGALYTATRDGWVKYFILHNETLVNWKHIDSQSLLGLTTTKDGGVILCDNEKGLLKVTE-EG-VEAIVPD 130 (355)
Q Consensus 53 ~p~~i~~d~~~g~l~~~~~~g~i~~~~~~~g~~~~~~~~~~~p~~gl~~d~~g~L~v~~~~~gl~~~~~-~g-~~~~~~~ 130 (355)
+-.++-+++..+.|.+++-+|.+..++......+.....+.... ..++..+-.+|+++..+.+.++|. ++ ...+...
T Consensus 15 ~IS~v~f~~~~~~LLvssWDgslrlYdv~~~~l~~~~~~~~plL-~c~F~d~~~~~~G~~dg~vr~~Dln~~~~~~igth 93 (323)
T KOG1036|consen 15 GISSVKFSPSSSDLLVSSWDGSLRLYDVPANSLKLKFKHGAPLL-DCAFADESTIVTGGLDGQVRRYDLNTGNEDQIGTH 93 (323)
T ss_pred ceeeEEEcCcCCcEEEEeccCcEEEEeccchhhhhheecCCcee-eeeccCCceEEEeccCceEEEEEecCCcceeeccC
Confidence 44567777778889999999999888875544332222233334 666666778999987766778884 55 4444443
Q ss_pred cCCcccEEEccCCcEEEEeCCCCCCCccccccccccCCCCeEEEEeCCCCeEEEeeccccccc-cEEEeCCCCEEEEEeC
Q 018474 131 ASFTNDVIAASDGTLYFTVASTKYTPTDFYKDMAEGKPYGQLRKYDPKLKETTVLHEGFYFAN-GIALSKNEDFVVVCES 209 (355)
Q Consensus 131 ~~~~~~l~~d~dG~ly~~d~~~~~~~~~~~~~~~~~~~~g~l~~~dp~~~~~~~~~~~~~~pn-gi~~~~dg~~l~v~~~ 209 (355)
...+..+.....-...+ .+.+...+-.|||..... . .....++ --+.+-.++.|+|..
T Consensus 94 ~~~i~ci~~~~~~~~vI-----------------sgsWD~~ik~wD~R~~~~-~--~~~d~~kkVy~~~v~g~~LvVg~- 152 (323)
T KOG1036|consen 94 DEGIRCIEYSYEVGCVI-----------------SGSWDKTIKFWDPRNKVV-V--GTFDQGKKVYCMDVSGNRLVVGT- 152 (323)
T ss_pred CCceEEEEeeccCCeEE-----------------EcccCccEEEEecccccc-c--cccccCceEEEEeccCCEEEEee-
Confidence 33444444433222222 234466777888764211 1 1111111 235555666677743
Q ss_pred CCCeEEEEEeCC
Q 018474 210 WKFRCRRYWLKG 221 (355)
Q Consensus 210 ~~~~i~~~~~~~ 221 (355)
...++..||+..
T Consensus 153 ~~r~v~iyDLRn 164 (323)
T KOG1036|consen 153 SDRKVLIYDLRN 164 (323)
T ss_pred cCceEEEEEccc
Confidence 346788899854
No 244
>KOG0299 consensus U3 snoRNP-associated protein (contains WD40 repeats) [RNA processing and modification]
Probab=92.64 E-value=5.3 Score=37.68 Aligned_cols=136 Identities=13% Similarity=0.168 Sum_probs=70.1
Q ss_pred EEecCCEEEEEEcCCCeeEEeeccCCCcccCeEECCCCCEEEEeCCCcEEEEc--CCC-e--EEEcCCc----------C
Q 018474 68 TATRDGWVKYFILHNETLVNWKHIDSQSLLGLTTTKDGGVILCDNEKGLLKVT--EEG-V--EAIVPDA----------S 132 (355)
Q Consensus 68 ~~~~~g~i~~~~~~~g~~~~~~~~~~~p~~gl~~d~~g~L~v~~~~~gl~~~~--~~g-~--~~~~~~~----------~ 132 (355)
++..|..+..++..+..-..|...++.+. ++++=.+..+..+...+.|+..+ +.. + ..++... .
T Consensus 303 VGgrDrT~rlwKi~eesqlifrg~~~sid-cv~~In~~HfvsGSdnG~IaLWs~~KKkplf~~~~AHgv~~~~~~~~~~~ 381 (479)
T KOG0299|consen 303 VGGRDRTVRLWKIPEESQLIFRGGEGSID-CVAFINDEHFVSGSDNGSIALWSLLKKKPLFTSRLAHGVIPELDPVNGNF 381 (479)
T ss_pred eccccceeEEEeccccceeeeeCCCCCee-eEEEecccceeeccCCceEEEeeecccCceeEeeccccccCCcccccccc
Confidence 34345544444442332233333445566 66664444555554444454444 222 1 2222211 2
Q ss_pred CcccEEEccCCcEEEEeCCCCCCCccccccccccCCCCeEEEEeCCCCeEEEee--ccccccccEEEeCCCCEEEEEeCC
Q 018474 133 FTNDVIAASDGTLYFTVASTKYTPTDFYKDMAEGKPYGQLRKYDPKLKETTVLH--EGFYFANGIALSKNEDFVVVCESW 210 (355)
Q Consensus 133 ~~~~l~~d~dG~ly~~d~~~~~~~~~~~~~~~~~~~~g~l~~~dp~~~~~~~~~--~~~~~pngi~~~~dg~~l~v~~~~ 210 (355)
+++++++-+.-.|..+.+. ...-+||.....-..+..+. .-..+-|.++++++|+++++.--.
T Consensus 382 Witsla~i~~sdL~asGS~---------------~G~vrLW~i~~g~r~i~~l~~ls~~GfVNsl~f~~sgk~ivagiGk 446 (479)
T KOG0299|consen 382 WITSLAVIPGSDLLASGSW---------------SGCVRLWKIEDGLRAINLLYSLSLVGFVNSLAFSNSGKRIVAGIGK 446 (479)
T ss_pred ceeeeEecccCceEEecCC---------------CCceEEEEecCCccccceeeecccccEEEEEEEccCCCEEEEeccc
Confidence 5666666655555554332 11224565554333444432 223567999999999988877666
Q ss_pred CCeEEEEEe
Q 018474 211 KFRCRRYWL 219 (355)
Q Consensus 211 ~~~i~~~~~ 219 (355)
.+++-|++.
T Consensus 447 EhRlGRW~~ 455 (479)
T KOG0299|consen 447 EHRLGRWWC 455 (479)
T ss_pred ccccceeeE
Confidence 778888775
No 245
>KOG2139 consensus WD40 repeat protein [General function prediction only]
Probab=92.53 E-value=4 Score=37.46 Aligned_cols=96 Identities=13% Similarity=0.042 Sum_probs=60.2
Q ss_pred CceEEEeeCCCeEEEEec-CCEEEEEEcCCCeeEEee-ccCCCcccCeEECCCCCEEEEeCCCcEEEEc-CCC---eEEE
Q 018474 54 PEDVSVVVSKGALYTATR-DGWVKYFILHNETLVNWK-HIDSQSLLGLTTTKDGGVILCDNEKGLLKVT-EEG---VEAI 127 (355)
Q Consensus 54 p~~i~~d~~~g~l~~~~~-~g~i~~~~~~~g~~~~~~-~~~~~p~~gl~~d~~g~L~v~~~~~gl~~~~-~~g---~~~~ 127 (355)
-.+|.+.+++..|..++. +..|..+|+.+|+-..+. ...+... -+.+.+||..+++..-++++++- .+. .+..
T Consensus 198 Vtsmqwn~dgt~l~tAS~gsssi~iWdpdtg~~~pL~~~glgg~s-lLkwSPdgd~lfaAt~davfrlw~e~q~wt~erw 276 (445)
T KOG2139|consen 198 VTSMQWNEDGTILVTASFGSSSIMIWDPDTGQKIPLIPKGLGGFS-LLKWSPDGDVLFAATCDAVFRLWQENQSWTKERW 276 (445)
T ss_pred eeEEEEcCCCCEEeecccCcceEEEEcCCCCCcccccccCCCcee-eEEEcCCCCEEEEecccceeeeehhcccceecce
Confidence 357777744444444444 567888999888766554 2233343 57889999877766667888886 332 2222
Q ss_pred cCCcCCcccEEEccCC-cEEEEeC
Q 018474 128 VPDASFTNDVIAASDG-TLYFTVA 150 (355)
Q Consensus 128 ~~~~~~~~~l~~d~dG-~ly~~d~ 150 (355)
.-....+..-+.+|.| .|.|+.+
T Consensus 277 ~lgsgrvqtacWspcGsfLLf~~s 300 (445)
T KOG2139|consen 277 ILGSGRVQTACWSPCGSFLLFACS 300 (445)
T ss_pred eccCCceeeeeecCCCCEEEEEEc
Confidence 2222477788899999 4555544
No 246
>KOG2096 consensus WD40 repeat protein [General function prediction only]
Probab=92.52 E-value=7.9 Score=35.03 Aligned_cols=152 Identities=14% Similarity=0.059 Sum_probs=77.0
Q ss_pred CCCCCCceEEEeeCCCeEEEEecCCEEEEEEcCCCe-----eEEeeccCCCcccCeEECCCCC-EEEEeCC-CcEEEE--
Q 018474 49 GCVNHPEDVSVVVSKGALYTATRDGWVKYFILHNET-----LVNWKHIDSQSLLGLTTTKDGG-VILCDNE-KGLLKV-- 119 (355)
Q Consensus 49 ~~~~~p~~i~~d~~~g~l~~~~~~g~i~~~~~~~g~-----~~~~~~~~~~p~~gl~~d~~g~-L~v~~~~-~gl~~~-- 119 (355)
|.-..-.++++..++..|-..+.|+.|..++.++-. ..+..-..++|. .+++.+|=+ +.|.-.. ..|+.|
T Consensus 84 gH~~~vt~~~FsSdGK~lat~~~Dr~Ir~w~~~DF~~~eHr~~R~nve~dhpT-~V~FapDc~s~vv~~~~g~~l~vyk~ 162 (420)
T KOG2096|consen 84 GHKKEVTDVAFSSDGKKLATISGDRSIRLWDVRDFENKEHRCIRQNVEYDHPT-RVVFAPDCKSVVVSVKRGNKLCVYKL 162 (420)
T ss_pred ccCCceeeeEEcCCCceeEEEeCCceEEEEecchhhhhhhhHhhccccCCCce-EEEECCCcceEEEEEccCCEEEEEEe
Confidence 344556788898555556667778888888764421 111112234677 888877765 3333332 234443
Q ss_pred cC--CC-e--EEEcCC---c-----CCcccEEEccCCcEEEEeCCCCCCCccccccccccCCCCeEEEEeCCCCeEEEee
Q 018474 120 TE--EG-V--EAIVPD---A-----SFTNDVIAASDGTLYFTVASTKYTPTDFYKDMAEGKPYGQLRKYDPKLKETTVLH 186 (355)
Q Consensus 120 ~~--~g-~--~~~~~~---~-----~~~~~l~~d~dG~ly~~d~~~~~~~~~~~~~~~~~~~~g~l~~~dp~~~~~~~~~ 186 (355)
++ +| . ..+... + ..+.++-+. ++..|+...+ ....+..|+.++.-+..+-
T Consensus 163 ~K~~dG~~~~~~v~~D~~~f~~kh~v~~i~iGiA-~~~k~imsas----------------~dt~i~lw~lkGq~L~~id 225 (420)
T KOG2096|consen 163 VKKTDGSGSHHFVHIDNLEFERKHQVDIINIGIA-GNAKYIMSAS----------------LDTKICLWDLKGQLLQSID 225 (420)
T ss_pred eecccCCCCcccccccccccchhcccceEEEeec-CCceEEEEec----------------CCCcEEEEecCCceeeeec
Confidence 42 45 2 111111 1 111122222 3334433322 1335777777644444443
Q ss_pred ccccccccEEEeCCCCEEEEEeCCCCeEEEEEe
Q 018474 187 EGFYFANGIALSKNEDFVVVCESWKFRCRRYWL 219 (355)
Q Consensus 187 ~~~~~pngi~~~~dg~~l~v~~~~~~~i~~~~~ 219 (355)
.+...-.-.+++|+|+++.++.-. --+.+|.+
T Consensus 226 tnq~~n~~aavSP~GRFia~~gFT-pDVkVwE~ 257 (420)
T KOG2096|consen 226 TNQSSNYDAAVSPDGRFIAVSGFT-PDVKVWEP 257 (420)
T ss_pred cccccccceeeCCCCcEEEEecCC-CCceEEEE
Confidence 333334456899999987777643 34444443
No 247
>KOG2321 consensus WD40 repeat protein [General function prediction only]
Probab=92.48 E-value=5.9 Score=38.61 Aligned_cols=110 Identities=15% Similarity=0.248 Sum_probs=63.7
Q ss_pred ceEEEeeCCCeEEEEecCCEEEEEEcCCCeeE-EeeccCCCcccCeEECCCCCEEEEeCCCcEEEE-cC-CC--eEEEcC
Q 018474 55 EDVSVVVSKGALYTATRDGWVKYFILHNETLV-NWKHIDSQSLLGLTTTKDGGVILCDNEKGLLKV-TE-EG--VEAIVP 129 (355)
Q Consensus 55 ~~i~~d~~~g~l~~~~~~g~i~~~~~~~g~~~-~~~~~~~~p~~gl~~d~~g~L~v~~~~~gl~~~-~~-~g--~~~~~~ 129 (355)
.+|..+...-.||++.....|||++.++|++. .+....+..+ .+-+.+...|+.+....|.+.+ |+ +. +..+..
T Consensus 137 RDm~y~~~scDly~~gsg~evYRlNLEqGrfL~P~~~~~~~lN-~v~in~~hgLla~Gt~~g~VEfwDpR~ksrv~~l~~ 215 (703)
T KOG2321|consen 137 RDMKYHKPSCDLYLVGSGSEVYRLNLEQGRFLNPFETDSGELN-VVSINEEHGLLACGTEDGVVEFWDPRDKSRVGTLDA 215 (703)
T ss_pred ccccccCCCccEEEeecCcceEEEEccccccccccccccccce-eeeecCccceEEecccCceEEEecchhhhhheeeec
Confidence 45566644555888777778999999999864 3333333344 5555555566665544555544 43 32 333211
Q ss_pred C------c-----CCcccEEEccCC-cEEEEeCCCCCCCccccccccccCCCCeEEEEeCCCCeEE
Q 018474 130 D------A-----SFTNDVIAASDG-TLYFTVASTKYTPTDFYKDMAEGKPYGQLRKYDPKLKETT 183 (355)
Q Consensus 130 ~------~-----~~~~~l~~d~dG-~ly~~d~~~~~~~~~~~~~~~~~~~~g~l~~~dp~~~~~~ 183 (355)
. + ..+.++.++.+| ++=+ |+.+|.++.||..+.+-.
T Consensus 216 ~~~v~s~pg~~~~~svTal~F~d~gL~~aV------------------Gts~G~v~iyDLRa~~pl 263 (703)
T KOG2321|consen 216 ASSVNSHPGGDAAPSVTALKFRDDGLHVAV------------------GTSTGSVLIYDLRASKPL 263 (703)
T ss_pred ccccCCCccccccCcceEEEecCCceeEEe------------------eccCCcEEEEEcccCCce
Confidence 1 0 345556666655 3323 455788999998766543
No 248
>KOG0273 consensus Beta-transducin family (WD-40 repeat) protein [Chromatin structure and dynamics]
Probab=92.41 E-value=10 Score=36.05 Aligned_cols=140 Identities=15% Similarity=0.123 Sum_probs=84.1
Q ss_pred CcccCeEECCCCCEEEEeCCCcEEEEc-CCC--eEEEcCCcCCcccEEEccCCcEEEEeCCCCCCCccccccccccCCCC
Q 018474 94 QSLLGLTTTKDGGVILCDNEKGLLKVT-EEG--VEAIVPDASFTNDVIAASDGTLYFTVASTKYTPTDFYKDMAEGKPYG 170 (355)
Q Consensus 94 ~p~~gl~~d~~g~L~v~~~~~gl~~~~-~~g--~~~~~~~~~~~~~l~~d~dG~ly~~d~~~~~~~~~~~~~~~~~~~~g 170 (355)
... ++++..+|.+.+....+|..++. .+| +..+...-.-+.+|-...+|+..++.+- .+
T Consensus 237 dVT-~L~Wn~~G~~LatG~~~G~~riw~~~G~l~~tl~~HkgPI~slKWnk~G~yilS~~v-----------------D~ 298 (524)
T KOG0273|consen 237 DVT-SLDWNNDGTLLATGSEDGEARIWNKDGNLISTLGQHKGPIFSLKWNKKGTYILSGGV-----------------DG 298 (524)
T ss_pred Ccc-eEEecCCCCeEEEeecCcEEEEEecCchhhhhhhccCCceEEEEEcCCCCEEEeccC-----------------Cc
Confidence 456 89999999998887777877776 566 5555443344667777778876665332 56
Q ss_pred eEEEEeCCCCeEEEeecccccc-ccEEEeCCCCEEEEEeCCCCeEEEEEeCCCCCcceeEecccCCCCcCceEECCCCCE
Q 018474 171 QLRKYDPKLKETTVLHEGFYFA-NGIALSKNEDFVVVCESWKFRCRRYWLKGDRAGILDAFIENLPGGPDNINLAPDGSF 249 (355)
Q Consensus 171 ~l~~~dp~~~~~~~~~~~~~~p-ngi~~~~dg~~l~v~~~~~~~i~~~~~~~~~~~~~~~~~~~~~g~p~~i~~d~~G~l 249 (355)
....||..+++......--..| -.+.+-.+ .-+++....++|+++.+...+ ...+|.. ..+-...+..++.|.+
T Consensus 299 ttilwd~~~g~~~q~f~~~s~~~lDVdW~~~--~~F~ts~td~~i~V~kv~~~~--P~~t~~G-H~g~V~alk~n~tg~L 373 (524)
T KOG0273|consen 299 TTILWDAHTGTVKQQFEFHSAPALDVDWQSN--DEFATSSTDGCIHVCKVGEDR--PVKTFIG-HHGEVNALKWNPTGSL 373 (524)
T ss_pred cEEEEeccCceEEEeeeeccCCccceEEecC--ceEeecCCCceEEEEEecCCC--cceeeec-ccCceEEEEECCCCce
Confidence 7888998888766543322223 11222222 234555567889988885432 2233442 3333445566666666
Q ss_pred EEEeecC
Q 018474 250 WIGLIKM 256 (355)
Q Consensus 250 wv~~~~~ 256 (355)
+.++...
T Consensus 374 LaS~SdD 380 (524)
T KOG0273|consen 374 LASCSDD 380 (524)
T ss_pred EEEecCC
Confidence 6665543
No 249
>PF00930 DPPIV_N: Dipeptidyl peptidase IV (DPP IV) N-terminal region; InterPro: IPR002469 In the MEROPS database peptidases and peptidase homologues are grouped into clans and families. Clans are groups of families for which there is evidence of common ancestry based on a common structural fold: Each clan is identified with two letters, the first representing the catalytic type of the families included in the clan (with the letter 'P' being used for a clan containing families of more than one of the catalytic types serine, threonine and cysteine). Some families cannot yet be assigned to clans, and when a formal assignment is required, such a family is described as belonging to clan A-, C-, M-, N-, S-, T- or U-, according to the catalytic type. Some clans are divided into subclans because there is evidence of a very ancient divergence within the clan, for example MA(E), the gluzincins, and MA(M), the metzincins. Peptidase families are grouped by their catalytic type, the first character representing the catalytic type: A, aspartic; C, cysteine; G, glutamic acid; M, metallo; N, asparagine; S, serine; T, threonine; and U, unknown. The serine, threonine and cysteine peptidases utilise the amino acid as a nucleophile and form an acyl intermediate - these peptidases can also readily act as transferases. In the case of aspartic, glutamic and metallopeptidases, the nucleophile is an activated water molecule. In the case of the asparagine endopeptidases, the nucleophile is asparagine and all are self-processing endopeptidases. In many instances the structural protein fold that characterises the clan or family may have lost its catalytic activity, yet retain its function in protein recognition and binding. Proteolytic enzymes that exploit serine in their catalytic activity are ubiquitous, being found in viruses, bacteria and eukaryotes []. They include a wide range of peptidase activity, including exopeptidase, endopeptidase, oligopeptidase and omega-peptidase activity. Over 20 families (denoted S1 - S66) of serine protease have been identified, these being grouped into clans on the basis of structural similarity and other functional evidence []. Structures are known for members of the clans and the structures indicate that some appear to be totally unrelated, suggesting different evolutionary origins for the serine peptidases []. Not withstanding their different evolutionary origins, there are similarities in the reaction mechanisms of several peptidases. Chymotrypsin, subtilisin and carboxypeptidase C have a catalytic triad of serine, aspartate and histidine in common: serine acts as a nucleophile, aspartate as an electrophile, and histidine as a base []. The geometric orientations of the catalytic residues are similar between families, despite different protein folds []. The linear arrangements of the catalytic residues commonly reflect clan relationships. For example the catalytic triad in the chymotrypsin clan (PA) is ordered HDS, but is ordered DHS in the subtilisin clan (SB) and SDH in the carboxypeptidase clan (SC) [, ]. This domain defines serine peptidases belonging to MEROPS peptidase family S9 (clan SC), subfamily S9B (dipeptidyl-peptidase IV). The protein fold of the peptidase domain for members of this family resembles that of serine carboxypeptidase D, the type example of clan SC. This domain is an alignment of the region to the N-terminal side of the active site, which is found in IPR001375 from INTERPRO. CD26 (3.4.14.5 from EC) is also called adenosine deaminase-binding protein (ADA-binding protein) or dipeptidylpeptidase IV (DPP IV ectoenzyme). The exopeptidase cleaves off N-terminal X-Pro or X-Ala dipeptides from polypeptides (dipeptidyl peptidase IV activity). CD26 serves as the costimulatory molecule in T cell activation and is an associated marker of autoimmune diseases, adenosine deaminase-deficiency and HIV pathogenesis. Dipeptidyl peptidase IV (DPP IV) is responsible for the removal of N-terminal dipeptides sequentially from polypeptides having unsubstituted N termini, provided that the penultimate residue is proline. The enzyme catalyses the reaction: Dipeptidyl-Polypeptide + H(2)O = Dipeptide + Polypeptide It is a type II membrane protein that forms a homodimer. CD molecules are leucocyte antigens on cell surfaces. CD antigens nomenclature is updated at Protein Reviews On The Web (http://prow.nci.nih.gov/). ; GO: 0006508 proteolysis, 0016020 membrane; PDB: 2RIP_A 3Q8W_B 2AJL_I 1TKR_B 1TK3_B 3C45_A 2G5P_A 3G0C_D 1R9M_C 1RWQ_A ....
Probab=92.28 E-value=6.4 Score=36.67 Aligned_cols=141 Identities=11% Similarity=-0.039 Sum_probs=75.0
Q ss_pred eEEEeeCCCeEEEEec--C---CEEEEEEcCCCeeEEeecc--CCC--cccCeEE---CCCCCEEEEeCC--CcEEEEcC
Q 018474 56 DVSVVVSKGALYTATR--D---GWVKYFILHNETLVNWKHI--DSQ--SLLGLTT---TKDGGVILCDNE--KGLLKVTE 121 (355)
Q Consensus 56 ~i~~d~~~g~l~~~~~--~---g~i~~~~~~~g~~~~~~~~--~~~--p~~gl~~---d~~g~L~v~~~~--~gl~~~~~ 121 (355)
.+.+.+++..+++... + -.+..+|..+++.+..... .+. ....+.+ +.++-||+.... ..|+.++.
T Consensus 188 ~v~W~~d~~~l~~~~~nR~q~~~~l~~~d~~tg~~~~~~~e~~~~Wv~~~~~~~~~~~~~~~~l~~s~~~G~~hly~~~~ 267 (353)
T PF00930_consen 188 RVGWSPDGKRLWVQWLNRDQNRLDLVLCDASTGETRVVLEETSDGWVDVYDPPHFLGPDGNEFLWISERDGYRHLYLYDL 267 (353)
T ss_dssp EEEEEETTEEEEEEEEETTSTEEEEEEEEECTTTCEEEEEEESSSSSSSSSEEEE-TTTSSEEEEEEETTSSEEEEEEET
T ss_pred cceecCCCcEEEEEEcccCCCEEEEEEEECCCCceeEEEEecCCcceeeecccccccCCCCEEEEEEEcCCCcEEEEEcc
Confidence 3445433433665432 1 2456677777654433211 111 1102332 223346666622 24888885
Q ss_pred CC--eEEEcCCcCCccc-EEEccCC-cEEEEeCCCCCCCccccccccccCCCCeEEEEeCC-CCeEEEeeccccccccEE
Q 018474 122 EG--VEAIVPDASFTND-VIAASDG-TLYFTVASTKYTPTDFYKDMAEGKPYGQLRKYDPK-LKETTVLHEGFYFANGIA 196 (355)
Q Consensus 122 ~g--~~~~~~~~~~~~~-l~~d~dG-~ly~~d~~~~~~~~~~~~~~~~~~~~g~l~~~dp~-~~~~~~~~~~~~~pngi~ 196 (355)
++ .+.+......+++ +.+|+++ .|||+.... ......||+.+.+ +++.+.+......-..+.
T Consensus 268 ~~~~~~~lT~G~~~V~~i~~~d~~~~~iyf~a~~~-------------~p~~r~lY~v~~~~~~~~~~LT~~~~~~~~~~ 334 (353)
T PF00930_consen 268 DGGKPRQLTSGDWEVTSILGWDEDNNRIYFTANGD-------------NPGERHLYRVSLDSGGEPKCLTCEDGDHYSAS 334 (353)
T ss_dssp TSSEEEESS-SSS-EEEEEEEECTSSEEEEEESSG-------------GTTSBEEEEEETTETTEEEESSTTSSTTEEEE
T ss_pred cccceeccccCceeecccceEcCCCCEEEEEecCC-------------CCCceEEEEEEeCCCCCeEeccCCCCCceEEE
Confidence 44 5666555444544 5678765 788875431 1224479999988 788877664433224789
Q ss_pred EeCCCCEEEEEeC
Q 018474 197 LSKNEDFVVVCES 209 (355)
Q Consensus 197 ~~~dg~~l~v~~~ 209 (355)
++||++.+...-+
T Consensus 335 ~Spdg~y~v~~~s 347 (353)
T PF00930_consen 335 FSPDGKYYVDTYS 347 (353)
T ss_dssp E-TTSSEEEEEEE
T ss_pred ECCCCCEEEEEEc
Confidence 9999996655543
No 250
>KOG1036 consensus Mitotic spindle checkpoint protein BUB3, WD repeat superfamily [Cell cycle control, cell division, chromosome partitioning]
Probab=92.22 E-value=8.3 Score=34.59 Aligned_cols=105 Identities=13% Similarity=0.101 Sum_probs=66.2
Q ss_pred CeEECC-CCCEEEEeCCCcEEEEc-CCC-eEEEcCCcCCcccEEEccCCcEEEEeCCCCCCCccccccccccCCCCeEEE
Q 018474 98 GLTTTK-DGGVILCDNEKGLLKVT-EEG-VEAIVPDASFTNDVIAASDGTLYFTVASTKYTPTDFYKDMAEGKPYGQLRK 174 (355)
Q Consensus 98 gl~~d~-~g~L~v~~~~~gl~~~~-~~g-~~~~~~~~~~~~~l~~d~dG~ly~~d~~~~~~~~~~~~~~~~~~~~g~l~~ 174 (355)
.+.+++ .+.|.|+.|.+.+..|+ +.- ++.......-+-+.++.++-++|+++ ..|.+.+
T Consensus 18 ~v~f~~~~~~LLvssWDgslrlYdv~~~~l~~~~~~~~plL~c~F~d~~~~~~G~------------------~dg~vr~ 79 (323)
T KOG1036|consen 18 SVKFSPSSSDLLVSSWDGSLRLYDVPANSLKLKFKHGAPLLDCAFADESTIVTGG------------------LDGQVRR 79 (323)
T ss_pred eEEEcCcCCcEEEEeccCcEEEEeccchhhhhheecCCceeeeeccCCceEEEec------------------cCceEEE
Confidence 667764 45788998887666666 322 22111111223445555555666653 2568999
Q ss_pred EeCCCCeEEEeeccccccccEEEeCCCCEEEEEeCCCCeEEEEEeCC
Q 018474 175 YDPKLKETTVLHEGFYFANGIALSKNEDFVVVCESWKFRCRRYWLKG 221 (355)
Q Consensus 175 ~dp~~~~~~~~~~~~~~pngi~~~~dg~~l~v~~~~~~~i~~~~~~~ 221 (355)
||.++++...+........+|...+... .+++..+.+.|-.+|...
T Consensus 80 ~Dln~~~~~~igth~~~i~ci~~~~~~~-~vIsgsWD~~ik~wD~R~ 125 (323)
T KOG1036|consen 80 YDLNTGNEDQIGTHDEGIRCIEYSYEVG-CVISGSWDKTIKFWDPRN 125 (323)
T ss_pred EEecCCcceeeccCCCceEEEEeeccCC-eEEEcccCccEEEEeccc
Confidence 9998887666655544455677665444 788888899999998753
No 251
>TIGR03118 PEPCTERM_chp_1 conserved hypothetical protein TIGR03118. This model describes and uncharacterized conserved hypothetical protein. Members are found with the C-terminal putative exosortase interaction domain, PEP-CTERM, in Nitrosospira multiformis, Rhodoferax ferrireducens, Solibacter usitatus Ellin6076, and Acidobacteria bacterium Ellin345. It is found without the PEP-CTERM domain in several other species, including Burkholderia ambifaria, Gloeobacter violaceus PCC 7421, and three copies in the Acanthamoeba polyphaga mimivirus.
Probab=92.01 E-value=4.4 Score=36.56 Aligned_cols=133 Identities=13% Similarity=0.030 Sum_probs=70.7
Q ss_pred cccccccEEEeCCCCEEEEEeCCCCeEEEEEeCCCC---Ccc-eeEecc---c--CCCCcCceEECCCCCEEEEeecCCc
Q 018474 188 GFYFANGIALSKNEDFVVVCESWKFRCRRYWLKGDR---AGI-LDAFIE---N--LPGGPDNINLAPDGSFWIGLIKMNQ 258 (355)
Q Consensus 188 ~~~~pngi~~~~dg~~l~v~~~~~~~i~~~~~~~~~---~~~-~~~~~~---~--~~g~p~~i~~d~~G~lwv~~~~~~~ 258 (355)
.+..|-||+++|.+. +||++...+....|+.+... ... ...-+. . .++.|.|+++.....+-|.. .+.+
T Consensus 21 ~L~N~WGia~~p~~~-~WVadngT~~~TlYdg~~~~~~g~~~~L~vtiP~~~~~~~~~~PTGiVfN~~~~F~vt~-~g~~ 98 (336)
T TIGR03118 21 GLRNAWGLSYRPGGP-FWVANTGTGTATLYVGNPDTQPLVQDPLVVVIPAPPPLAAEGTPTGQVFNGSDTFVVSG-EGIT 98 (336)
T ss_pred cccccceeEecCCCC-EEEecCCcceEEeecCCcccccCCccceEEEecCCCCCCCCCCccEEEEeCCCceEEcC-CCcc
Confidence 567899999999874 99999999989999875211 111 111111 1 23478898886544443433 2221
Q ss_pred hhhHhhhcchhHHHHHHhccchhhcccCCCCCCceEEEEEeCCCCe-----EEEEEEC-CCCCcccceeEEE-EeCCEEE
Q 018474 259 TGVRAIQKCREKWELLDAYPGLISLLLPMGSDAGARVVKVDGNDGK-----IIRDFND-PDATYISFVTSAA-EFDGNLY 331 (355)
Q Consensus 259 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~g~-----~~~~~~~-~~g~~~~~~~~~~-~~~g~L~ 331 (355)
....|+ +.++.+.|...+|.-+. .+..+.. ..|.++....... ..++.||
T Consensus 99 ~~a~Fi-----------------------f~tEdGTisaW~p~v~~t~~~~~~~~~d~s~~gavYkGLAi~~~~~~~~LY 155 (336)
T TIGR03118 99 GPSRFL-----------------------FVTEDGTLSGWAPALGTTRMTRAEIVVDASQQGNVYKGLAVGPTGGGDYLY 155 (336)
T ss_pred cceeEE-----------------------EEeCCceEEeecCcCCcccccccEEEEccCCCcceeeeeEEeecCCCceEE
Confidence 111110 11333444444431111 1122321 1233332222111 1258899
Q ss_pred EeecCCCeEEEeeC
Q 018474 332 LASLQSNFIGILPL 345 (355)
Q Consensus 332 v~~~~~~~i~~~~~ 345 (355)
..++++++|-+++-
T Consensus 156 aadF~~g~IDVFd~ 169 (336)
T TIGR03118 156 AANFRQGRIDVFKG 169 (336)
T ss_pred EeccCCCceEEecC
Confidence 99999999998864
No 252
>KOG1407 consensus WD40 repeat protein [Function unknown]
Probab=91.92 E-value=8.3 Score=33.93 Aligned_cols=180 Identities=13% Similarity=0.090 Sum_probs=98.5
Q ss_pred CCCCCCceEEEeeCCCeEEEEecCCEEEEEEcCCCeeEE-ee--ccCCCcccCeEECCCC-CEEEEeCC-CcEEEEc-CC
Q 018474 49 GCVNHPEDVSVVVSKGALYTATRDGWVKYFILHNETLVN-WK--HIDSQSLLGLTTTKDG-GVILCDNE-KGLLKVT-EE 122 (355)
Q Consensus 49 ~~~~~p~~i~~d~~~g~l~~~~~~g~i~~~~~~~g~~~~-~~--~~~~~p~~gl~~d~~g-~L~v~~~~-~gl~~~~-~~ 122 (355)
+..+.-.++++..++..|-.++.++.+..++...++... +. ...+... -++.++.. .++++.++ +-+.+.+ ..
T Consensus 18 ~~~~~v~Sv~wn~~g~~lasgs~dktv~v~n~e~~r~~~~~~~~gh~~svd-ql~w~~~~~d~~atas~dk~ir~wd~r~ 96 (313)
T KOG1407|consen 18 GHVQKVHSVAWNCDGTKLASGSFDKTVSVWNLERDRFRKELVYRGHTDSVD-QLCWDPKHPDLFATASGDKTIRIWDIRS 96 (313)
T ss_pred hhhhcceEEEEcccCceeeecccCCceEEEEecchhhhhhhcccCCCcchh-hheeCCCCCcceEEecCCceEEEEEecc
Confidence 445667889998777778888888877777764443221 11 0111233 56777543 45554444 3455555 34
Q ss_pred C--eEEEcCCcCCcccEEEccCCc-EEEEeCCCCCCCccccccccccCCCCeEEEEeCCCCeEEEeeccccccccEEEeC
Q 018474 123 G--VEAIVPDASFTNDVIAASDGT-LYFTVASTKYTPTDFYKDMAEGKPYGQLRKYDPKLKETTVLHEGFYFANGIALSK 199 (355)
Q Consensus 123 g--~~~~~~~~~~~~~l~~d~dG~-ly~~d~~~~~~~~~~~~~~~~~~~~g~l~~~dp~~~~~~~~~~~~~~pngi~~~~ 199 (355)
+ ..++... ..-.-++..|+|+ +-+.+ ....+..+|..+.+...-.+.....|-+++..
T Consensus 97 ~k~~~~i~~~-~eni~i~wsp~g~~~~~~~------------------kdD~it~id~r~~~~~~~~~~~~e~ne~~w~~ 157 (313)
T KOG1407|consen 97 GKCTARIETK-GENINITWSPDGEYIAVGN------------------KDDRITFIDARTYKIVNEEQFKFEVNEISWNN 157 (313)
T ss_pred CcEEEEeecc-CcceEEEEcCCCCEEEEec------------------CcccEEEEEecccceeehhcccceeeeeeecC
Confidence 4 3333222 1223345666663 33322 13356666654444333233344567788887
Q ss_pred CCCEEEEEeCCCCeEEEEEeCCCCCcceeEecccCCCCcCc---eEECCCCCEEEEeec
Q 018474 200 NEDFVVVCESWKFRCRRYWLKGDRAGILDAFIENLPGGPDN---INLAPDGSFWIGLIK 255 (355)
Q Consensus 200 dg~~l~v~~~~~~~i~~~~~~~~~~~~~~~~~~~~~g~p~~---i~~d~~G~lwv~~~~ 255 (355)
+++ +++..++.++|..+..- .++..+ .+...|.| |.+|++|+++.....
T Consensus 158 ~nd-~Fflt~GlG~v~ILsyp--sLkpv~----si~AH~snCicI~f~p~GryfA~GsA 209 (313)
T KOG1407|consen 158 SND-LFFLTNGLGCVEILSYP--SLKPVQ----SIKAHPSNCICIEFDPDGRYFATGSA 209 (313)
T ss_pred CCC-EEEEecCCceEEEEecc--cccccc----ccccCCcceEEEEECCCCceEeeccc
Confidence 776 77777777787776642 222222 22234566 458999987765443
No 253
>PF00058 Ldl_recept_b: Low-density lipoprotein receptor repeat class B; InterPro: IPR000033 The low-density lipoprotein receptor (LDLR) is the major cholesterol-carrying lipoprotein of plasma, acting to regulate cholesterol homeostasis in mammalian cells. The LDL receptor binds LDL and transports it into cells by acidic endocytosis. In order to be internalized, the receptor-ligand complex must first cluster into clathrin-coated pits. Once inside the cell, the LDLR separates from its ligand, which is degraded in the lysosomes, while the receptor returns to the cell surface []. The internal dissociation of the LDLR with its ligand is mediated by proton pumps within the walls of the endosome that lower the pH. The LDLR is a multi-domain protein, containing: The ligand-binding domain contains seven or eight 40-amino acid LDLR class A (cysteine-rich) repeats, each of which contains a coordinated calcium ion and six cysteine residues involved in disulphide bond formation []. Similar domains have been found in other extracellular and membrane proteins []. The second conserved region contains two EGF repeats, followed by six LDLR class B (YWTD) repeats, and another EGF repeat. The LDLR class B repeats each contain a conserved YWTD motif, and is predicted to form a beta-propeller structure []. This region is critical for ligand release and recycling of the receptor []. The third domain is rich in serine and threonine residues and contains clustered O-linked carbohydrate chains. The fourth domain is the hydrophobic transmembrane region. The fifth domain is the cytoplasmic tail that directs the receptor to clathrin-coated pits. LDLR is closely related in structure to several other receptors, including LRP1, LRP1b, megalin/LRP2, VLDL receptor, lipoprotein receptor, MEGF7/LRP4, and LRP8/apolipoprotein E receptor2); these proteins participate in a wide range of physiological processes, including the regulation of lipid metabolism, protection against atherosclerosis, neurodevelopment, and transport of nutrients and vitamins []. This entry represents the LDLR classB (YWTD) repeat, the structure of which has been solved []. The six YWTD repeats together fold into a six-bladed beta-propeller. Each blade of the propeller consists of four antiparallel beta-strands; the innermost strand of each blade is labeled 1 and the outermost strand, 4. The sequence repeats are offset with respect to the blades of the propeller, such that any given 40-residue YWTD repeat spans strands 24 of one propeller blade and strand 1 of the subsequent blade. This offset ensures circularization of the propeller because the last strand of the final sequence repeat acts as an innermost strand 1 of the blade that harbors strands 24 from the first sequence repeat. The repeat is found in a variety of proteins that include, vitellogenin receptor from Drosophila melanogaster, low-density lipoprotein (LDL) receptor [], preproepidermal growth factor, and nidogen (entactin).; PDB: 3S2K_A 3S8Z_A 3S8V_B 4A0P_A 3SOB_B 3S94_B 4DG6_A 3SOV_A 3SOQ_A 1NPE_A ....
Probab=91.63 E-value=0.76 Score=28.20 Aligned_cols=39 Identities=15% Similarity=0.091 Sum_probs=28.9
Q ss_pred EEEEEeCCCC-eEEEEEeCCCCCcceeEecccCCCCcCceEEC
Q 018474 203 FVVVCESWKF-RCRRYWLKGDRAGILDAFIENLPGGPDNINLA 244 (355)
Q Consensus 203 ~l~v~~~~~~-~i~~~~~~~~~~~~~~~~~~~~~g~p~~i~~d 244 (355)
.+||++...+ .|.+.+++|.. .++++...-..|.++++|
T Consensus 2 ~iYWtD~~~~~~I~~a~~dGs~---~~~vi~~~l~~P~giaVD 41 (42)
T PF00058_consen 2 KIYWTDWSQDPSIERANLDGSN---RRTVISDDLQHPEGIAVD 41 (42)
T ss_dssp EEEEEETTTTEEEEEEETTSTS---EEEEEESSTSSEEEEEEE
T ss_pred EEEEEECCCCcEEEEEECCCCC---eEEEEECCCCCcCEEEEC
Confidence 5999999999 99999988743 344444334569999887
No 254
>KOG2110 consensus Uncharacterized conserved protein, contains WD40 repeats [Function unknown]
Probab=91.61 E-value=11 Score=34.71 Aligned_cols=138 Identities=14% Similarity=0.195 Sum_probs=80.6
Q ss_pred CCeEEEEecCCEEEEEEcCCCeeEEeec-cCCCcccCeE-ECC-CCCEEEEeC----CCcEEEEcCCC---eEEEcCCcC
Q 018474 63 KGALYTATRDGWVKYFILHNETLVNWKH-IDSQSLLGLT-TTK-DGGVILCDN----EKGLLKVTEEG---VEAIVPDAS 132 (355)
Q Consensus 63 ~g~l~~~~~~g~i~~~~~~~g~~~~~~~-~~~~p~~gl~-~d~-~g~L~v~~~----~~gl~~~~~~g---~~~~~~~~~ 132 (355)
..+|.+..++. |+.+|.++-+..+... ...+|. |+. +.. .++-|++-. .+.++.+|... +..+.....
T Consensus 97 r~RLvV~Lee~-IyIydI~~MklLhTI~t~~~n~~-gl~AlS~n~~n~ylAyp~s~t~GdV~l~d~~nl~~v~~I~aH~~ 174 (391)
T KOG2110|consen 97 RKRLVVCLEES-IYIYDIKDMKLLHTIETTPPNPK-GLCALSPNNANCYLAYPGSTTSGDVVLFDTINLQPVNTINAHKG 174 (391)
T ss_pred cceEEEEEccc-EEEEecccceeehhhhccCCCcc-ceEeeccCCCCceEEecCCCCCceEEEEEcccceeeeEEEecCC
Confidence 45577666655 8999987766543322 224455 543 332 223344321 23466666322 333333335
Q ss_pred CcccEEEccCCcEEEEeCCCCCCCccccccccccCCCCeEEE-EeC-CCCeEEEeecccc--ccccEEEeCCCCEEEEEe
Q 018474 133 FTNDVIAASDGTLYFTVASTKYTPTDFYKDMAEGKPYGQLRK-YDP-KLKETTVLHEGFY--FANGIALSKNEDFVVVCE 208 (355)
Q Consensus 133 ~~~~l~~d~dG~ly~~d~~~~~~~~~~~~~~~~~~~~g~l~~-~dp-~~~~~~~~~~~~~--~pngi~~~~dg~~l~v~~ 208 (355)
.+..++++++|++..|-+. .|.+.| |.- ++.++..+..+.. .-..++|++|+.+| .+.
T Consensus 175 ~lAalafs~~G~llATASe-----------------KGTVIRVf~v~~G~kl~eFRRG~~~~~IySL~Fs~ds~~L-~~s 236 (391)
T KOG2110|consen 175 PLAALAFSPDGTLLATASE-----------------KGTVIRVFSVPEGQKLYEFRRGTYPVSIYSLSFSPDSQFL-AAS 236 (391)
T ss_pred ceeEEEECCCCCEEEEecc-----------------CceEEEEEEcCCccEeeeeeCCceeeEEEEEEECCCCCeE-EEe
Confidence 6788999999999887554 455544 443 3345555555543 23468999999855 444
Q ss_pred CCCCeEEEEEeC
Q 018474 209 SWKFRCRRYWLK 220 (355)
Q Consensus 209 ~~~~~i~~~~~~ 220 (355)
+....|+.|.++
T Consensus 237 S~TeTVHiFKL~ 248 (391)
T KOG2110|consen 237 SNTETVHIFKLE 248 (391)
T ss_pred cCCCeEEEEEec
Confidence 567889998874
No 255
>PF02897 Peptidase_S9_N: Prolyl oligopeptidase, N-terminal beta-propeller domain; InterPro: IPR004106 In the MEROPS database peptidases and peptidase homologues are grouped into clans and families. Clans are groups of families for which there is evidence of common ancestry based on a common structural fold: Each clan is identified with two letters, the first representing the catalytic type of the families included in the clan (with the letter 'P' being used for a clan containing families of more than one of the catalytic types serine, threonine and cysteine). Some families cannot yet be assigned to clans, and when a formal assignment is required, such a family is described as belonging to clan A-, C-, M-, N-, S-, T- or U-, according to the catalytic type. Some clans are divided into subclans because there is evidence of a very ancient divergence within the clan, for example MA(E), the gluzincins, and MA(M), the metzincins. Peptidase families are grouped by their catalytic type, the first character representing the catalytic type: A, aspartic; C, cysteine; G, glutamic acid; M, metallo; N, asparagine; S, serine; T, threonine; and U, unknown. The serine, threonine and cysteine peptidases utilise the amino acid as a nucleophile and form an acyl intermediate - these peptidases can also readily act as transferases. In the case of aspartic, glutamic and metallopeptidases, the nucleophile is an activated water molecule. In the case of the asparagine endopeptidases, the nucleophile is asparagine and all are self-processing endopeptidases. In many instances the structural protein fold that characterises the clan or family may have lost its catalytic activity, yet retain its function in protein recognition and binding. Proteolytic enzymes that exploit serine in their catalytic activity are ubiquitous, being found in viruses, bacteria and eukaryotes []. They include a wide range of peptidase activity, including exopeptidase, endopeptidase, oligopeptidase and omega-peptidase activity. Over 20 families (denoted S1 - S66) of serine protease have been identified, these being grouped into clans on the basis of structural similarity and other functional evidence []. Structures are known for members of the clans and the structures indicate that some appear to be totally unrelated, suggesting different evolutionary origins for the serine peptidases []. Not withstanding their different evolutionary origins, there are similarities in the reaction mechanisms of several peptidases. Chymotrypsin, subtilisin and carboxypeptidase C have a catalytic triad of serine, aspartate and histidine in common: serine acts as a nucleophile, aspartate as an electrophile, and histidine as a base []. The geometric orientations of the catalytic residues are similar between families, despite different protein folds []. The linear arrangements of the catalytic residues commonly reflect clan relationships. For example the catalytic triad in the chymotrypsin clan (PA) is ordered HDS, but is ordered DHS in the subtilisin clan (SB) and SDH in the carboxypeptidase clan (SC) [, ]. This entry represents the beta-propeller domain found at the N-terminal of prolyl oligopeptidase, including acylamino-acid-releasing enzyme (also known as acylaminoacyl peptidase), which belong to the MEROPS peptidase family S9 (clan SC), subfamily S9A. The prolyl oligopeptidase family consist of a number of evolutionary related peptidases whose catalytic activity seems to be provided by a charge relay system similar to that of the trypsin family of serine proteases, but which evolved by independent convergent evolution. The N-terminal domain of prolyl oligopeptidases form an unusual 7-bladed beta-propeller consisting of seven 4-stranded beta-sheet motifs. Prolyl oligopeptidase is a large cytosolic enzyme involved in the maturation and degradation of peptide hormones and neuropeptides, which relate to the induction of amnesia. The enzyme contains a peptidase domain, where its catalytic triad (Ser554, His680, Asp641) is covered by the central tunnel of the N-terminal beta-propeller domain. In this way, large structured peptides are excluded from the active site, thereby protecting larger peptides and proteins from proteolysis in the cytosol []. The protein fold of the peptidase domain for members of this family resembles that of serine carboxypeptidase D, the type example of clan SC. Mammalian acylaminoacyl peptidase is an exopeptidase that is a member of the same prolyl oligopeptidase family of serine peptidases. This enzyme removes acylated amino acid residues from the N terminus of oligopeptides [].; GO: 0004252 serine-type endopeptidase activity, 0006508 proteolysis; PDB: 2BKL_B 3DDU_A 1YR2_A 2XE4_A 1VZ3_A 3EQ9_A 1O6F_A 3EQ7_A 4AN0_A 1UOP_A ....
Probab=91.49 E-value=13 Score=35.32 Aligned_cols=142 Identities=15% Similarity=0.093 Sum_probs=74.9
Q ss_pred eEEEEeCCCCeEEEeeccccc--cccEEEeCCCCEEEEEeCCC----------CeEEEEEeCCCCCcceeEecccCCCC-
Q 018474 171 QLRKYDPKLKETTVLHEGFYF--ANGIALSKNEDFVVVCESWK----------FRCRRYWLKGDRAGILDAFIENLPGG- 237 (355)
Q Consensus 171 ~l~~~dp~~~~~~~~~~~~~~--pngi~~~~dg~~l~v~~~~~----------~~i~~~~~~~~~~~~~~~~~~~~~g~- 237 (355)
.++.+|.++|+... ..+.. ..++++.+|++.+|++.... ..|+++.+......-..+|-+..+.+
T Consensus 151 ~l~v~Dl~tg~~l~--d~i~~~~~~~~~W~~d~~~~~y~~~~~~~~~~~~~~~~~v~~~~~gt~~~~d~lvfe~~~~~~~ 228 (414)
T PF02897_consen 151 TLRVFDLETGKFLP--DGIENPKFSSVSWSDDGKGFFYTRFDEDQRTSDSGYPRQVYRHKLGTPQSEDELVFEEPDEPFW 228 (414)
T ss_dssp EEEEEETTTTEEEE--EEEEEEESEEEEECTTSSEEEEEECSTTTSS-CCGCCEEEEEEETTS-GGG-EEEEC-TTCTTS
T ss_pred EEEEEECCCCcCcC--CcccccccceEEEeCCCCEEEEEEeCcccccccCCCCcEEEEEECCCChHhCeeEEeecCCCcE
Confidence 58888998886532 22222 22389999999888876443 34677776332221122332222222
Q ss_pred cCceEECCCCCEEEEeecCCchhhHhhhcchhHHHHHHhccchhhcccCCCCCCceEEEEEeCCCC----eEEEEEEC-C
Q 018474 238 PDNINLAPDGSFWIGLIKMNQTGVRAIQKCREKWELLDAYPGLISLLLPMGSDAGARVVKVDGNDG----KIIRDFND-P 312 (355)
Q Consensus 238 p~~i~~d~~G~lwv~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~g----~~~~~~~~-~ 312 (355)
--++..+++|++.+-..... .....++.++..++ .....+.. .
T Consensus 229 ~~~~~~s~d~~~l~i~~~~~--------------------------------~~~s~v~~~d~~~~~~~~~~~~~l~~~~ 276 (414)
T PF02897_consen 229 FVSVSRSKDGRYLFISSSSG--------------------------------TSESEVYLLDLDDGGSPDAKPKLLSPRE 276 (414)
T ss_dssp EEEEEE-TTSSEEEEEEESS--------------------------------SSEEEEEEEECCCTTTSS-SEEEEEESS
T ss_pred EEEEEecCcccEEEEEEEcc--------------------------------ccCCeEEEEeccccCCCcCCcEEEeCCC
Confidence 22456788888544433311 11356888877332 23444433 2
Q ss_pred CCCcccceeEEEEeCCEEEEee---cCCCeEEEeeCCCCCC
Q 018474 313 DATYISFVTSAAEFDGNLYLAS---LQSNFIGILPLDGPEP 350 (355)
Q Consensus 313 ~g~~~~~~~~~~~~~g~L~v~~---~~~~~i~~~~~~~~~~ 350 (355)
++ ....+...++.+|+-+ ....+|.++++.+..+
T Consensus 277 ~~----~~~~v~~~~~~~yi~Tn~~a~~~~l~~~~l~~~~~ 313 (414)
T PF02897_consen 277 DG----VEYYVDHHGDRLYILTNDDAPNGRLVAVDLADPSP 313 (414)
T ss_dssp SS-----EEEEEEETTEEEEEE-TT-TT-EEEEEETTSTSG
T ss_pred Cc----eEEEEEccCCEEEEeeCCCCCCcEEEEeccccccc
Confidence 33 2333444578899865 4456888888877653
No 256
>KOG0310 consensus Conserved WD40 repeat-containing protein [Function unknown]
Probab=91.44 E-value=13 Score=35.34 Aligned_cols=143 Identities=12% Similarity=0.158 Sum_probs=73.3
Q ss_pred eEEEeeCCCeEE-EEecCCEEEEEEcCCCeeE-EeeccCCCcccCeEECCC-CCEEEEeCCCcEEEEc-C-CC-eE-EEc
Q 018474 56 DVSVVVSKGALY-TATRDGWVKYFILHNETLV-NWKHIDSQSLLGLTTTKD-GGVILCDNEKGLLKVT-E-EG-VE-AIV 128 (355)
Q Consensus 56 ~i~~d~~~g~l~-~~~~~g~i~~~~~~~g~~~-~~~~~~~~p~~gl~~d~~-g~L~v~~~~~gl~~~~-~-~g-~~-~~~ 128 (355)
++.+- ++|.|+ +|...|.|..||.++.... .+.......+ -..+.+. +.+++....+.+.++. . ++ +. .+.
T Consensus 73 s~~fR-~DG~LlaaGD~sG~V~vfD~k~r~iLR~~~ah~apv~-~~~f~~~d~t~l~s~sDd~v~k~~d~s~a~v~~~l~ 150 (487)
T KOG0310|consen 73 SVDFR-SDGRLLAAGDESGHVKVFDMKSRVILRQLYAHQAPVH-VTKFSPQDNTMLVSGSDDKVVKYWDLSTAYVQAELS 150 (487)
T ss_pred EEEee-cCCeEEEccCCcCcEEEeccccHHHHHHHhhccCcee-EEEecccCCeEEEecCCCceEEEEEcCCcEEEEEec
Confidence 34444 444444 4556677777774332111 1111112234 4555544 4556655556777776 3 34 42 222
Q ss_pred CCcCCcccEEEcc-CCcEEEEeCCCCCCCccccccccccCCCCeEEEEeCCCCe--EEEeeccccccccEEEeCCCCEEE
Q 018474 129 PDASFTNDVIAAS-DGTLYFTVASTKYTPTDFYKDMAEGKPYGQLRKYDPKLKE--TTVLHEGFYFANGIALSKNEDFVV 205 (355)
Q Consensus 129 ~~~~~~~~l~~d~-dG~ly~~d~~~~~~~~~~~~~~~~~~~~g~l~~~dp~~~~--~~~~~~~~~~pngi~~~~dg~~l~ 205 (355)
.....+...++.| ++.+.++.+. .|.+-.||..+.. ...+..+... ..+.+-|.|. ++
T Consensus 151 ~htDYVR~g~~~~~~~hivvtGsY-----------------Dg~vrl~DtR~~~~~v~elnhg~pV-e~vl~lpsgs-~i 211 (487)
T KOG0310|consen 151 GHTDYVRCGDISPANDHIVVTGSY-----------------DGKVRLWDTRSLTSRVVELNHGCPV-ESVLALPSGS-LI 211 (487)
T ss_pred CCcceeEeeccccCCCeEEEecCC-----------------CceEEEEEeccCCceeEEecCCCce-eeEEEcCCCC-EE
Confidence 3335677777766 4567777443 5667777765542 1222222222 2344445655 54
Q ss_pred EEeCCCCeEEEEEeC
Q 018474 206 VCESWKFRCRRYWLK 220 (355)
Q Consensus 206 v~~~~~~~i~~~~~~ 220 (355)
++. +.+.+.+||+.
T Consensus 212 asA-gGn~vkVWDl~ 225 (487)
T KOG0310|consen 212 ASA-GGNSVKVWDLT 225 (487)
T ss_pred EEc-CCCeEEEEEec
Confidence 543 56788888885
No 257
>PF05694 SBP56: 56kDa selenium binding protein (SBP56); InterPro: IPR008826 This family consists of several eukaryotic selenium binding proteins as well as three sequences from archaea. The exact function of this protein is unknown although it is thought that SBP56 participates in late stages of intra-Golgi protein transport []. The Lotus japonicus homologue of SBP56, LjSBP is thought to have more than one physiological role and can be implicated in controlling the oxidation/reduction status of target proteins in vesicular Golgi transport [].; GO: 0008430 selenium binding; PDB: 2ECE_A.
Probab=91.35 E-value=14 Score=35.29 Aligned_cols=193 Identities=12% Similarity=0.072 Sum_probs=82.3
Q ss_pred CCCeEEEEe-cCCEEEEEEcCCC----eeEEeec--------cCCCcccCeEECCCCCEEEEeC-------CCcEEEEcC
Q 018474 62 SKGALYTAT-RDGWVKYFILHNE----TLVNWKH--------IDSQSLLGLTTTKDGGVILCDN-------EKGLLKVTE 121 (355)
Q Consensus 62 ~~g~l~~~~-~~g~i~~~~~~~g----~~~~~~~--------~~~~p~~gl~~d~~g~L~v~~~-------~~gl~~~~~ 121 (355)
..+.|++.. .+++|+.+|..+. ++.++.. ....|+ ...--++|+++|... .+|++.+|.
T Consensus 86 ~Rr~Li~PgL~SsrIyviD~~~dPr~P~l~KvIe~~ev~~k~g~s~PH-T~Hclp~G~imIS~lGd~~G~g~Ggf~llD~ 164 (461)
T PF05694_consen 86 ERRYLILPGLRSSRIYVIDTKTDPRKPRLHKVIEPEEVFEKTGLSRPH-TVHCLPDGRIMISALGDADGNGPGGFVLLDG 164 (461)
T ss_dssp -S-EEEEEBTTT--EEEEE--S-TTS-EEEEEE-HHHHHHHH-EEEEE-EEEE-SS--EEEEEEEETTS-S--EEEEE-T
T ss_pred cCCcEEeeeeccCcEEEEECCCCCCCCceEeeeCHHHHHhhcCCCCCc-eeeecCCccEEEEeccCCCCCCCCcEEEEcC
Confidence 356677754 5789999997543 3333321 113466 555558999998642 246888885
Q ss_pred CC---eEEEcCC---cCCcccEEEccCCcEEEEeCCCCC---CCccccccccccCCCCeEEEEeCCCCeEEEeeccc---
Q 018474 122 EG---VEAIVPD---ASFTNDVIAASDGTLYFTVASTKY---TPTDFYKDMAEGKPYGQLRKYDPKLKETTVLHEGF--- 189 (355)
Q Consensus 122 ~g---~~~~~~~---~~~~~~l~~d~dG~ly~~d~~~~~---~~~~~~~~~~~~~~~g~l~~~dp~~~~~~~~~~~~--- 189 (355)
+. ....... ..+-.++-.-+..++-+++.-... ...-...++..+.....+..||-.+.+.....+-.
T Consensus 165 ~tf~v~g~We~~~~~~~~gYDfw~qpr~nvMiSSeWg~P~~~~~Gf~~~d~~~~~yG~~l~vWD~~~r~~~Q~idLg~~g 244 (461)
T PF05694_consen 165 ETFEVKGRWEKDRGPQPFGYDFWYQPRHNVMISSEWGAPSMFEKGFNPEDLEAGKYGHSLHVWDWSTRKLLQTIDLGEEG 244 (461)
T ss_dssp TT--EEEE--SB-TT------EEEETTTTEEEE-B---HHHHTT---TTTHHHH-S--EEEEEETTTTEEEEEEES-TTE
T ss_pred ccccccceeccCCCCCCCCCCeEEcCCCCEEEEeccCChhhcccCCChhHhhcccccCeEEEEECCCCcEeeEEecCCCC
Confidence 43 2222221 256667777787788887542110 00001122223333447889998877765333211
Q ss_pred cccccEE--EeCCCCEEEEEeCCCCeEEEEEeCCCCCcceeEecc------------cC-------CCCcCceEECCCCC
Q 018474 190 YFANGIA--LSKNEDFVVVCESWKFRCRRYWLKGDRAGILDAFIE------------NL-------PGGPDNINLAPDGS 248 (355)
Q Consensus 190 ~~pngi~--~~~dg~~l~v~~~~~~~i~~~~~~~~~~~~~~~~~~------------~~-------~g~p~~i~~d~~G~ 248 (355)
..|--|. -+|+...-|+.....+.|+++..+....-..+..++ .+ |+++..|.++-|.+
T Consensus 245 ~~pLEvRflH~P~~~~gFvg~aLss~i~~~~k~~~g~W~a~kVi~ip~~~v~~~~lp~ml~~~~~~P~LitDI~iSlDDr 324 (461)
T PF05694_consen 245 QMPLEVRFLHDPDANYGFVGCALSSSIWRFYKDDDGEWAAEKVIDIPAKKVEGWILPEMLKPFGAVPPLITDILISLDDR 324 (461)
T ss_dssp EEEEEEEE-SSTT--EEEEEEE--EEEEEEEE-ETTEEEEEEEEEE--EE--SS---GGGGGG-EE------EEE-TTS-
T ss_pred CceEEEEecCCCCccceEEEEeccceEEEEEEcCCCCeeeeEEEECCCcccCcccccccccccccCCCceEeEEEccCCC
Confidence 1232232 235566677777777889888763221112222221 11 55677777777665
Q ss_pred -EEEEeec
Q 018474 249 -FWIGLIK 255 (355)
Q Consensus 249 -lwv~~~~ 255 (355)
|||+++.
T Consensus 325 fLYvs~W~ 332 (461)
T PF05694_consen 325 FLYVSNWL 332 (461)
T ss_dssp EEEEEETT
T ss_pred EEEEEccc
Confidence 8999876
No 258
>KOG4547 consensus WD40 repeat-containing protein [General function prediction only]
Probab=91.14 E-value=8.3 Score=37.48 Aligned_cols=111 Identities=12% Similarity=0.093 Sum_probs=65.0
Q ss_pred ccCCCCeEEEEeCCCCeEEEeeccccccccEEEeC--CCCEEEEEeCCCCeEEEEEeCCCCCcceeEecccCCCCcCceE
Q 018474 165 EGKPYGQLRKYDPKLKETTVLHEGFYFANGIALSK--NEDFVVVCESWKFRCRRYWLKGDRAGILDAFIENLPGGPDNIN 242 (355)
Q Consensus 165 ~~~~~g~l~~~dp~~~~~~~~~~~~~~pngi~~~~--dg~~l~v~~~~~~~i~~~~~~~~~~~~~~~~~~~~~g~p~~i~ 242 (355)
.|++.|.++.|+...++++........++++...- +.-+++.+.....++..++..... ....+- ..+..+.+++
T Consensus 75 lgt~~g~v~~ys~~~g~it~~~st~~h~~~v~~~~~~~~~~ciyS~~ad~~v~~~~~~~~~--~~~~~~-~~~~~~~sl~ 151 (541)
T KOG4547|consen 75 LGTPQGSVLLYSVAGGEITAKLSTDKHYGNVNEILDAQRLGCIYSVGADLKVVYILEKEKV--IIRIWK-EQKPLVSSLC 151 (541)
T ss_pred eecCCccEEEEEecCCeEEEEEecCCCCCcceeeecccccCceEecCCceeEEEEecccce--eeeeec-cCCCccceEE
Confidence 45667888999888888877655444444433222 222233332234445555542211 111121 1223467788
Q ss_pred ECCCCCEEEEeecCCchhhHhhhcchhHHHHHHhccchhhcccCCCCCCceEEEEEeCCCCeEEEEEECCCCCc
Q 018474 243 LAPDGSFWIGLIKMNQTGVRAIQKCREKWELLDAYPGLISLLLPMGSDAGARVVKVDGNDGKIIRDFNDPDATY 316 (355)
Q Consensus 243 ~d~~G~lwv~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~g~~~~~~~~~~g~~ 316 (355)
+.+||.+.+.... .|-.+|-++++.+..|+.+.+.+
T Consensus 152 is~D~~~l~~as~--------------------------------------~ik~~~~~~kevv~~ftgh~s~v 187 (541)
T KOG4547|consen 152 ISPDGKILLTASR--------------------------------------QIKVLDIETKEVVITFTGHGSPV 187 (541)
T ss_pred EcCCCCEEEeccc--------------------------------------eEEEEEccCceEEEEecCCCcce
Confidence 9999987775543 47788876889999998877753
No 259
>KOG0281 consensus Beta-TrCP (transducin repeats containing)/Slimb proteins [Function unknown]
Probab=91.06 E-value=1.9 Score=39.17 Aligned_cols=136 Identities=15% Similarity=0.162 Sum_probs=77.2
Q ss_pred CCeEEEEecCCEEEEEEcCCCeeE-EeeccCCCcccCeEECCCCCEEEEeCCCcEEEEc---CCC---eEEEcCCcCCcc
Q 018474 63 KGALYTATRDGWVKYFILHNETLV-NWKHIDSQSLLGLTTTKDGGVILCDNEKGLLKVT---EEG---VEAIVPDASFTN 135 (355)
Q Consensus 63 ~g~l~~~~~~g~i~~~~~~~g~~~-~~~~~~~~p~~gl~~d~~g~L~v~~~~~gl~~~~---~~g---~~~~~~~~~~~~ 135 (355)
+..+..|+.+..|..+|-.+|+.. .+...+.... ++.+. +|.+.-+...+.+...+ +.. .+++......+|
T Consensus 247 ~rviisGSSDsTvrvWDv~tge~l~tlihHceaVL-hlrf~-ng~mvtcSkDrsiaVWdm~sps~it~rrVLvGHrAaVN 324 (499)
T KOG0281|consen 247 ERVIVSGSSDSTVRVWDVNTGEPLNTLIHHCEAVL-HLRFS-NGYMVTCSKDRSIAVWDMASPTDITLRRVLVGHRAAVN 324 (499)
T ss_pred ceEEEecCCCceEEEEeccCCchhhHHhhhcceeE-EEEEe-CCEEEEecCCceeEEEeccCchHHHHHHHHhhhhhhee
Confidence 445555677777778887777643 2223334455 66663 44443333333333333 221 222333336677
Q ss_pred cEEEccCCcEEEEeCCCCCCCccccccccccCCCCeEEEEeCCCCeEEEeeccccccccEEEeCCCCEEEEEeCCCCeEE
Q 018474 136 DVIAASDGTLYFTVASTKYTPTDFYKDMAEGKPYGQLRKYDPKLKETTVLHEGFYFANGIALSKNEDFVVVCESWKFRCR 215 (355)
Q Consensus 136 ~l~~d~dG~ly~~d~~~~~~~~~~~~~~~~~~~~g~l~~~dp~~~~~~~~~~~~~~pngi~~~~dg~~l~v~~~~~~~i~ 215 (355)
.+.+|.. +.++-++ ...+-.|+..|.++.....+ .-.|||.-.-...++++.+..+.|.
T Consensus 325 vVdfd~k--yIVsASg-----------------DRTikvW~~st~efvRtl~g--HkRGIAClQYr~rlvVSGSSDntIR 383 (499)
T KOG0281|consen 325 VVDFDDK--YIVSASG-----------------DRTIKVWSTSTCEFVRTLNG--HKRGIACLQYRDRLVVSGSSDNTIR 383 (499)
T ss_pred eeccccc--eEEEecC-----------------CceEEEEeccceeeehhhhc--ccccceehhccCeEEEecCCCceEE
Confidence 7777654 4444333 33577778777776443332 3456665554446999999999999
Q ss_pred EEEeCC
Q 018474 216 RYWLKG 221 (355)
Q Consensus 216 ~~~~~~ 221 (355)
.++++.
T Consensus 384 lwdi~~ 389 (499)
T KOG0281|consen 384 LWDIEC 389 (499)
T ss_pred EEeccc
Confidence 999854
No 260
>KOG0294 consensus WD40 repeat-containing protein [Function unknown]
Probab=91.01 E-value=12 Score=33.89 Aligned_cols=133 Identities=11% Similarity=0.143 Sum_probs=71.8
Q ss_pred CeEECCCCCEEEEeCC--CcEEEEc-CCC--eEEEcCCcCCcccEEEccCCcEEEEeCCCCCCCccccccccccCCCCeE
Q 018474 98 GLTTTKDGGVILCDNE--KGLLKVT-EEG--VEAIVPDASFTNDVIAASDGTLYFTVASTKYTPTDFYKDMAEGKPYGQL 172 (355)
Q Consensus 98 gl~~d~~g~L~v~~~~--~gl~~~~-~~g--~~~~~~~~~~~~~l~~d~dG~ly~~d~~~~~~~~~~~~~~~~~~~~g~l 172 (355)
.++++ ..|++..+ ..|..|| +.. ...+......++.+.++++-. ...++.+...|.+
T Consensus 48 avAVs---~~~~aSGssDetI~IYDm~k~~qlg~ll~HagsitaL~F~~~~S---------------~shLlS~sdDG~i 109 (362)
T KOG0294|consen 48 ALAVS---GPYVASGSSDETIHIYDMRKRKQLGILLSHAGSITALKFYPPLS---------------KSHLLSGSDDGHI 109 (362)
T ss_pred EEEec---ceeEeccCCCCcEEEEeccchhhhcceeccccceEEEEecCCcc---------------hhheeeecCCCcE
Confidence 56664 34555433 2466777 322 222222234566666654320 0022233446677
Q ss_pred EEEeCCCCeEEEee---ccccccccEEEeCCCCEEEEEeCCCCeEEEEEeCCCCCcceeEecccCCCCcCceEECCCCCE
Q 018474 173 RKYDPKLKETTVLH---EGFYFANGIALSKNEDFVVVCESWKFRCRRYWLKGDRAGILDAFIENLPGGPDNINLAPDGSF 249 (355)
Q Consensus 173 ~~~dp~~~~~~~~~---~~~~~pngi~~~~dg~~l~v~~~~~~~i~~~~~~~~~~~~~~~~~~~~~g~p~~i~~d~~G~l 249 (355)
..|+ .+.+..+. ..-..-++++++|-++ |-++-.+.+.+..+++=..+ ..++-++...+..+.++++|..
T Consensus 110 ~iw~--~~~W~~~~slK~H~~~Vt~lsiHPS~K-LALsVg~D~~lr~WNLV~Gr----~a~v~~L~~~at~v~w~~~Gd~ 182 (362)
T KOG0294|consen 110 IIWR--VGSWELLKSLKAHKGQVTDLSIHPSGK-LALSVGGDQVLRTWNLVRGR----VAFVLNLKNKATLVSWSPQGDH 182 (362)
T ss_pred EEEE--cCCeEEeeeecccccccceeEecCCCc-eEEEEcCCceeeeehhhcCc----cceeeccCCcceeeEEcCCCCE
Confidence 7777 34554432 1223478999999998 66665555566666652111 1233344455677889999986
Q ss_pred EEEeec
Q 018474 250 WIGLIK 255 (355)
Q Consensus 250 wv~~~~ 255 (355)
|+-...
T Consensus 183 F~v~~~ 188 (362)
T KOG0294|consen 183 FVVSGR 188 (362)
T ss_pred EEEEec
Confidence 665554
No 261
>KOG0306 consensus WD40-repeat-containing subunit of the 18S rRNA processing complex [RNA processing and modification]
Probab=90.99 E-value=8.1 Score=38.90 Aligned_cols=149 Identities=19% Similarity=0.142 Sum_probs=85.5
Q ss_pred CCceEEEeeCCCeEEEEecCCEEEEEEcCCCeeEEeeccCCCcccCeEECCCCCEEEEeCCCcEEEEc--CCC--eEEEc
Q 018474 53 HPEDVSVVVSKGALYTATRDGWVKYFILHNETLVNWKHIDSQSLLGLTTTKDGGVILCDNEKGLLKVT--EEG--VEAIV 128 (355)
Q Consensus 53 ~p~~i~~d~~~g~l~~~~~~g~i~~~~~~~g~~~~~~~~~~~p~~gl~~d~~g~L~v~~~~~gl~~~~--~~g--~~~~~ 128 (355)
.--++.+.|++..|-++.-|..+..|-..+=++..-.....-|..+|-+.+|+.|.++.+.+.-+++. .-| -+.+-
T Consensus 510 dvL~v~~Spdgk~LaVsLLdnTVkVyflDtlKFflsLYGHkLPV~smDIS~DSklivTgSADKnVKiWGLdFGDCHKS~f 589 (888)
T KOG0306|consen 510 DVLCVSVSPDGKLLAVSLLDNTVKVYFLDTLKFFLSLYGHKLPVLSMDISPDSKLIVTGSADKNVKIWGLDFGDCHKSFF 589 (888)
T ss_pred cEEEEEEcCCCcEEEEEeccCeEEEEEecceeeeeeecccccceeEEeccCCcCeEEeccCCCceEEeccccchhhhhhh
Confidence 34466677656666666667666555553433322111111132267777999999987665545554 235 23332
Q ss_pred CCcCCcccEEEccCCcEEEEeCCCCCCCccccccccccCCCCeEEEEeCCCCe-EEEeeccccccccEEEeCCCCEEEEE
Q 018474 129 PDASFTNDVIAASDGTLYFTVASTKYTPTDFYKDMAEGKPYGQLRKYDPKLKE-TTVLHEGFYFANGIALSKNEDFVVVC 207 (355)
Q Consensus 129 ~~~~~~~~l~~d~dG~ly~~d~~~~~~~~~~~~~~~~~~~~g~l~~~dp~~~~-~~~~~~~~~~pngi~~~~dg~~l~v~ 207 (355)
.....+..+.+-|+-.++|+-+. .+.+-+||.+.-+ ++.+.........++.+|+|. ..++
T Consensus 590 AHdDSvm~V~F~P~~~~FFt~gK-----------------D~kvKqWDg~kFe~iq~L~~H~~ev~cLav~~~G~-~vvs 651 (888)
T KOG0306|consen 590 AHDDSVMSVQFLPKTHLFFTCGK-----------------DGKVKQWDGEKFEEIQKLDGHHSEVWCLAVSPNGS-FVVS 651 (888)
T ss_pred cccCceeEEEEcccceeEEEecC-----------------cceEEeechhhhhhheeeccchheeeeeEEcCCCC-eEEe
Confidence 22256778888888888887543 5567778743221 222222334456788999998 4555
Q ss_pred eCCCCeEEEEEe
Q 018474 208 ESWKFRCRRYWL 219 (355)
Q Consensus 208 ~~~~~~i~~~~~ 219 (355)
.+....|..|..
T Consensus 652 ~shD~sIRlwE~ 663 (888)
T KOG0306|consen 652 SSHDKSIRLWER 663 (888)
T ss_pred ccCCceeEeeec
Confidence 555566766654
No 262
>PHA03098 kelch-like protein; Provisional
Probab=90.97 E-value=11 Score=37.24 Aligned_cols=113 Identities=13% Similarity=0.068 Sum_probs=59.4
Q ss_pred CCeEEE-Eec-----CCEEEEEEcCCCeeEEeeccC-CC-cccCeEECCCCCEEEEeCC-------CcEEEEcC-CC-eE
Q 018474 63 KGALYT-ATR-----DGWVKYFILHNETLVNWKHID-SQ-SLLGLTTTKDGGVILCDNE-------KGLLKVTE-EG-VE 125 (355)
Q Consensus 63 ~g~l~~-~~~-----~g~i~~~~~~~g~~~~~~~~~-~~-p~~gl~~d~~g~L~v~~~~-------~gl~~~~~-~g-~~ 125 (355)
++.+|+ |.. ...+.++|+.+++|+...... .+ .. +.+. -+|++|+.... +.+.++++ ++ .+
T Consensus 342 ~~~lyv~GG~~~~~~~~~v~~yd~~~~~W~~~~~lp~~r~~~-~~~~-~~~~iYv~GG~~~~~~~~~~v~~yd~~t~~W~ 419 (534)
T PHA03098 342 NNRIYVIGGIYNSISLNTVESWKPGESKWREEPPLIFPRYNP-CVVN-VNNLIYVIGGISKNDELLKTVECFSLNTNKWS 419 (534)
T ss_pred CCEEEEEeCCCCCEecceEEEEcCCCCceeeCCCcCcCCccc-eEEE-ECCEEEEECCcCCCCcccceEEEEeCCCCeee
Confidence 566775 322 134678898888887654321 11 12 2222 46789986431 23678884 44 44
Q ss_pred EEcCCc-CCcccEEEccCCcEEEEeCCCCCCCccccccccccCCCCeEEEEeCCCCeEEEee
Q 018474 126 AIVPDA-SFTNDVIAASDGTLYFTVASTKYTPTDFYKDMAEGKPYGQLRKYDPKLKETTVLH 186 (355)
Q Consensus 126 ~~~~~~-~~~~~l~~d~dG~ly~~d~~~~~~~~~~~~~~~~~~~~g~l~~~dp~~~~~~~~~ 186 (355)
.+.... ..-..-++.-+|.||+....... .. ......+++|||.+++++.+.
T Consensus 420 ~~~~~p~~r~~~~~~~~~~~iyv~GG~~~~---~~------~~~~~~v~~yd~~~~~W~~~~ 472 (534)
T PHA03098 420 KGSPLPISHYGGCAIYHDGKIYVIGGISYI---DN------IKVYNIVESYNPVTNKWTELS 472 (534)
T ss_pred ecCCCCccccCceEEEECCEEEEECCccCC---CC------CcccceEEEecCCCCceeeCC
Confidence 433221 11112233346789986532100 00 001234999999999988764
No 263
>KOG4378 consensus Nuclear protein COP1 [Signal transduction mechanisms]
Probab=90.64 E-value=17 Score=35.03 Aligned_cols=116 Identities=12% Similarity=0.048 Sum_probs=68.1
Q ss_pred EEEeCCCCEEEEEeCCCCeEEEEEeCCCCCcceeEecccCCCCcCceEECCCCCEEEEeecCCchhhHhhhcchhHHHHH
Q 018474 195 IALSKNEDFVVVCESWKFRCRRYWLKGDRAGILDAFIENLPGGPDNINLAPDGSFWIGLIKMNQTGVRAIQKCREKWELL 274 (355)
Q Consensus 195 i~~~~dg~~l~v~~~~~~~i~~~~~~~~~~~~~~~~~~~~~g~p~~i~~d~~G~lwv~~~~~~~~~~~~~~~~~~~~~~~ 274 (355)
+.+++-.++++.+...++.|..||+.|.. .+..+......-..|+++.+.....+++-+-
T Consensus 170 l~ys~skr~lL~~asd~G~VtlwDv~g~s--p~~~~~~~HsAP~~gicfspsne~l~vsVG~------------------ 229 (673)
T KOG4378|consen 170 LRYSPSKRFLLSIASDKGAVTLWDVQGMS--PIFHASEAHSAPCRGICFSPSNEALLVSVGY------------------ 229 (673)
T ss_pred eecccccceeeEeeccCCeEEEEeccCCC--cccchhhhccCCcCcceecCCccceEEEecc------------------
Confidence 45778888899988888899999987632 1111221111124789988877554444331
Q ss_pred HhccchhhcccCCCCCCceEEEEEeCCCCeE-EEEEECCCCCcccceeEEEEe-CCEEEEeecCCCeEEEeeCCCCCCCc
Q 018474 275 DAYPGLISLLLPMGSDAGARVVKVDGNDGKI-IRDFNDPDATYISFVTSAAEF-DGNLYLASLQSNFIGILPLDGPEPQL 352 (355)
Q Consensus 275 ~~~~~~~~~~~~~~~~~~~~v~~~~~~~g~~-~~~~~~~~g~~~~~~~~~~~~-~g~L~v~~~~~~~i~~~~~~~~~~~~ 352 (355)
+ --|+.||. .-+. ...+.-. ...+.+.+. .|...+.+...+.|.-|+++...+-.
T Consensus 230 ---------------D--kki~~yD~-~s~~s~~~l~y~-----~Plstvaf~~~G~~L~aG~s~G~~i~YD~R~~k~Pv 286 (673)
T KOG4378|consen 230 ---------------D--KKINIYDI-RSQASTDRLTYS-----HPLSTVAFSECGTYLCAGNSKGELIAYDMRSTKAPV 286 (673)
T ss_pred ---------------c--ceEEEeec-ccccccceeeec-----CCcceeeecCCceEEEeecCCceEEEEecccCCCCc
Confidence 0 24778886 3332 2222221 123344444 47766666668889999988766544
Q ss_pred C
Q 018474 353 A 353 (355)
Q Consensus 353 ~ 353 (355)
+
T Consensus 287 ~ 287 (673)
T KOG4378|consen 287 A 287 (673)
T ss_pred e
Confidence 3
No 264
>KOG0284 consensus Polyadenylation factor I complex, subunit PFS2 [RNA processing and modification]
Probab=90.52 E-value=3.2 Score=38.60 Aligned_cols=147 Identities=12% Similarity=0.124 Sum_probs=81.0
Q ss_pred ceEEEeeCCCeEEEEecCCEEEEEEcCCCeeEEe-eccCCCcccCeEECCCCCEEEEeCCCcEEEEcC--CC--eEEEcC
Q 018474 55 EDVSVVVSKGALYTATRDGWVKYFILHNETLVNW-KHIDSQSLLGLTTTKDGGVILCDNEKGLLKVTE--EG--VEAIVP 129 (355)
Q Consensus 55 ~~i~~d~~~g~l~~~~~~g~i~~~~~~~g~~~~~-~~~~~~p~~gl~~d~~g~L~v~~~~~gl~~~~~--~g--~~~~~~ 129 (355)
.++.+..++..+..++.+|-|..+++.-.-.+.+ ......+. ++++.+++..|++.+.+|.+++-. .. ..++..
T Consensus 142 r~m~ws~~g~wmiSgD~gG~iKyWqpnmnnVk~~~ahh~eaIR-dlafSpnDskF~t~SdDg~ikiWdf~~~kee~vL~G 220 (464)
T KOG0284|consen 142 RTMKWSHNGTWMISGDKGGMIKYWQPNMNNVKIIQAHHAEAIR-DLAFSPNDSKFLTCSDDGTIKIWDFRMPKEERVLRG 220 (464)
T ss_pred eeEEEccCCCEEEEcCCCceEEecccchhhhHHhhHhhhhhhh-eeccCCCCceeEEecCCCeEEEEeccCCchhheecc
Confidence 4555662333333344455555555533322211 11113466 899998888888887878776642 22 233433
Q ss_pred CcCCcccEEEccCCcEEEEeCCCCCCCccccccccccCCCCeEEEEeCCCCeEE-EeeccccccccEEEeCCCCEEEEEe
Q 018474 130 DASFTNDVIAASDGTLYFTVASTKYTPTDFYKDMAEGKPYGQLRKYDPKLKETT-VLHEGFYFANGIALSKNEDFVVVCE 208 (355)
Q Consensus 130 ~~~~~~~l~~d~dG~ly~~d~~~~~~~~~~~~~~~~~~~~g~l~~~dp~~~~~~-~~~~~~~~pngi~~~~dg~~l~v~~ 208 (355)
....+.++...|.-.+.++-+. ..-+-.+||++++-- .+...-..--++.+.++++ .+.+.
T Consensus 221 HgwdVksvdWHP~kgLiasgsk-----------------DnlVKlWDprSg~cl~tlh~HKntVl~~~f~~n~N-~Llt~ 282 (464)
T KOG0284|consen 221 HGWDVKSVDWHPTKGLIASGSK-----------------DNLVKLWDPRSGSCLATLHGHKNTVLAVKFNPNGN-WLLTG 282 (464)
T ss_pred CCCCcceeccCCccceeEEccC-----------------CceeEeecCCCcchhhhhhhccceEEEEEEcCCCC-eeEEc
Confidence 3356777777776555554322 334566899877421 1111112234567889987 44555
Q ss_pred CCCCeEEEEEeC
Q 018474 209 SWKFRCRRYWLK 220 (355)
Q Consensus 209 ~~~~~i~~~~~~ 220 (355)
+....+..||++
T Consensus 283 skD~~~kv~DiR 294 (464)
T KOG0284|consen 283 SKDQSCKVFDIR 294 (464)
T ss_pred cCCceEEEEehh
Confidence 566778888885
No 265
>KOG0301 consensus Phospholipase A2-activating protein (contains WD40 repeats) [Lipid transport and metabolism]
Probab=90.46 E-value=5.5 Score=39.58 Aligned_cols=99 Identities=14% Similarity=0.258 Sum_probs=59.9
Q ss_pred CCCCCCCceEEEeeCCCeEEEEecCCEEEEEEcCCCeeEEeeccCCCcccCeEECCCCCEEEEeCCCcEEEEcCCC--eE
Q 018474 48 EGCVNHPEDVSVVVSKGALYTATRDGWVKYFILHNETLVNWKHIDSQSLLGLTTTKDGGVILCDNEKGLLKVTEEG--VE 125 (355)
Q Consensus 48 ~~~~~~p~~i~~d~~~g~l~~~~~~g~i~~~~~~~g~~~~~~~~~~~p~~gl~~d~~g~L~v~~~~~gl~~~~~~g--~~ 125 (355)
.|....-.++++- ++..+..++.||.|..++...+.+.+..-..+..+ .+....++.++|++..++-+++.+.+ .+
T Consensus 176 ~gHtD~VRgL~vl-~~~~flScsNDg~Ir~w~~~ge~l~~~~ghtn~vY-sis~~~~~~~Ivs~gEDrtlriW~~~e~~q 253 (745)
T KOG0301|consen 176 SGHTDCVRGLAVL-DDSHFLSCSNDGSIRLWDLDGEVLLEMHGHTNFVY-SISMALSDGLIVSTGEDRTLRIWKKDECVQ 253 (745)
T ss_pred ccchhheeeeEEe-cCCCeEeecCCceEEEEeccCceeeeeeccceEEE-EEEecCCCCeEEEecCCceEEEeecCceEE
Confidence 3444556677777 56567777789989889884444444433345567 77766678899988888877777533 44
Q ss_pred EEcCCcCCcccEEEccCCcEEEE
Q 018474 126 AIVPDASFTNDVIAASDGTLYFT 148 (355)
Q Consensus 126 ~~~~~~~~~~~l~~d~dG~ly~~ 148 (355)
.+.-+...+-+..+-++|.|+++
T Consensus 254 ~I~lPttsiWsa~~L~NgDIvvg 276 (745)
T KOG0301|consen 254 VITLPTTSIWSAKVLLNGDIVVG 276 (745)
T ss_pred EEecCccceEEEEEeeCCCEEEe
Confidence 44333223334444344444443
No 266
>KOG0274 consensus Cdc4 and related F-box and WD-40 proteins [General function prediction only]
Probab=90.43 E-value=20 Score=35.58 Aligned_cols=153 Identities=11% Similarity=0.071 Sum_probs=86.5
Q ss_pred cCCCCCCCceEEEeeCCCeEEEEecCCEEEEEEcCCCeeEEeeccCCCcccCeEECCCCCEEEEeCCCcEEEE-c-CCC-
Q 018474 47 GEGCVNHPEDVSVVVSKGALYTATRDGWVKYFILHNETLVNWKHIDSQSLLGLTTTKDGGVILCDNEKGLLKV-T-EEG- 123 (355)
Q Consensus 47 ~~~~~~~p~~i~~d~~~g~l~~~~~~g~i~~~~~~~g~~~~~~~~~~~p~~gl~~d~~g~L~v~~~~~gl~~~-~-~~g- 123 (355)
.+|...+--+++....++.|+.++.|..+..+|..+|+-..... +...++..++..+.+.++...+..+++ + .++
T Consensus 245 l~GH~g~V~~l~~~~~~~~lvsgS~D~t~rvWd~~sg~C~~~l~--gh~stv~~~~~~~~~~~sgs~D~tVkVW~v~n~~ 322 (537)
T KOG0274|consen 245 LVGHFGGVWGLAFPSGGDKLVSGSTDKTERVWDCSTGECTHSLQ--GHTSSVRCLTIDPFLLVSGSRDNTVKVWDVTNGA 322 (537)
T ss_pred ccCCCCCceeEEEecCCCEEEEEecCCcEEeEecCCCcEEEEec--CCCceEEEEEccCceEeeccCCceEEEEeccCcc
Confidence 45666666777776336677788889999999988887665443 222202334433444444223344444 4 456
Q ss_pred -eEEEcCCcCCcccEEEccCCcEEEEeCCCCCCCccccccccccCCCCeEEEEeCCCCeEEEeeccc-cccccEEEeCCC
Q 018474 124 -VEAIVPDASFTNDVIAASDGTLYFTVASTKYTPTDFYKDMAEGKPYGQLRKYDPKLKETTVLHEGF-YFANGIALSKNE 201 (355)
Q Consensus 124 -~~~~~~~~~~~~~l~~d~dG~ly~~d~~~~~~~~~~~~~~~~~~~~g~l~~~dp~~~~~~~~~~~~-~~pngi~~~~dg 201 (355)
++++......++.+..+ +.+.|+.+. .+.+-.||+.+++.-....+. ..-..+.++..
T Consensus 323 ~l~l~~~h~~~V~~v~~~--~~~lvsgs~-----------------d~~v~VW~~~~~~cl~sl~gH~~~V~sl~~~~~- 382 (537)
T KOG0274|consen 323 CLNLLRGHTGPVNCVQLD--EPLLVSGSY-----------------DGTVKVWDPRTGKCLKSLSGHTGRVYSLIVDSE- 382 (537)
T ss_pred eEEEeccccccEEEEEec--CCEEEEEec-----------------CceEEEEEhhhceeeeeecCCcceEEEEEecCc-
Confidence 55554333567777776 555555433 456778887766653333331 11223344332
Q ss_pred CEEEEEeCCCCeEEEEEeCCC
Q 018474 202 DFVVVCESWKFRCRRYWLKGD 222 (355)
Q Consensus 202 ~~l~v~~~~~~~i~~~~~~~~ 222 (355)
. .++..+....|..+|+.+.
T Consensus 383 ~-~~~Sgs~D~~IkvWdl~~~ 402 (537)
T KOG0274|consen 383 N-RLLSGSLDTTIKVWDLRTK 402 (537)
T ss_pred c-eEEeeeeccceEeecCCch
Confidence 4 4455555677888888654
No 267
>KOG2096 consensus WD40 repeat protein [General function prediction only]
Probab=90.38 E-value=14 Score=33.60 Aligned_cols=61 Identities=13% Similarity=0.087 Sum_probs=38.1
Q ss_pred cccccEEEeCCCCEEEEEeCCCCeEEEEEeCC-CCCcceeEecccCCCCcCceEECCCCCEEEEeec
Q 018474 190 YFANGIALSKNEDFVVVCESWKFRCRRYWLKG-DRAGILDAFIENLPGGPDNINLAPDGSFWIGLIK 255 (355)
Q Consensus 190 ~~pngi~~~~dg~~l~v~~~~~~~i~~~~~~~-~~~~~~~~~~~~~~g~p~~i~~d~~G~lwv~~~~ 255 (355)
..|--++++|.|+.|-++ ....|..|.-+. +.....+ +-..+-..++..+++|++.+++..
T Consensus 332 ~~p~RL~lsP~g~~lA~s--~gs~l~~~~se~g~~~~~~e---~~h~~~Is~is~~~~g~~~atcGd 393 (420)
T KOG2096|consen 332 SEPVRLELSPSGDSLAVS--FGSDLKVFASEDGKDYPELE---DIHSTTISSISYSSDGKYIATCGD 393 (420)
T ss_pred CCceEEEeCCCCcEEEee--cCCceEEEEcccCccchhHH---HhhcCceeeEEecCCCcEEeeecc
Confidence 456678999999965554 345677776532 2222222 122334677899999998887754
No 268
>KOG0313 consensus Microtubule binding protein YTM1 (contains WD40 repeats) [Cytoskeleton]
Probab=90.22 E-value=15 Score=33.96 Aligned_cols=155 Identities=14% Similarity=0.214 Sum_probs=96.8
Q ss_pred CCCCCCceEEEeeCCCeEEEEecCCEEEEEEcCCCe---eEE--------------------eeccCC--CcccCeEECC
Q 018474 49 GCVNHPEDVSVVVSKGALYTATRDGWVKYFILHNET---LVN--------------------WKHIDS--QSLLGLTTTK 103 (355)
Q Consensus 49 ~~~~~p~~i~~d~~~g~l~~~~~~g~i~~~~~~~g~---~~~--------------------~~~~~~--~p~~gl~~d~ 103 (355)
|.-..-+++..++++..+..++.|..|-.++..... .+. .....+ .|...+.+++
T Consensus 191 GHk~~V~sVsv~~sgtr~~SgS~D~~lkiWs~~~~~~~~~E~~s~~rrk~~~~~~~~~~r~P~vtl~GHt~~Vs~V~w~d 270 (423)
T KOG0313|consen 191 GHKRSVDSVSVDSSGTRFCSGSWDTMLKIWSVETDEEDELESSSNRRRKKQKREKEGGTRTPLVTLEGHTEPVSSVVWSD 270 (423)
T ss_pred ccccceeEEEecCCCCeEEeecccceeeecccCCCccccccccchhhhhhhhhhhcccccCceEEecccccceeeEEEcC
Confidence 555667888888444444456678777766621110 000 001111 1221566777
Q ss_pred CCCEEEEeCCCcEEEEc-CCC--eEEEcCCcCCcccEEEccCCcEEEEeCCCCCCCccccccccccCCCCeEEEEeCCCC
Q 018474 104 DGGVILCDNEKGLLKVT-EEG--VEAIVPDASFTNDVIAASDGTLYFTVASTKYTPTDFYKDMAEGKPYGQLRKYDPKLK 180 (355)
Q Consensus 104 ~g~L~v~~~~~gl~~~~-~~g--~~~~~~~~~~~~~l~~d~dG~ly~~d~~~~~~~~~~~~~~~~~~~~g~l~~~dp~~~ 180 (355)
.+.+|-+.+.+-|...| .+| ...+... ...+++...+.-.+.++.++ ..-+..|||.++
T Consensus 271 ~~v~yS~SwDHTIk~WDletg~~~~~~~~~-ksl~~i~~~~~~~Ll~~gss-----------------dr~irl~DPR~~ 332 (423)
T KOG0313|consen 271 ATVIYSVSWDHTIKVWDLETGGLKSTLTTN-KSLNCISYSPLSKLLASGSS-----------------DRHIRLWDPRTG 332 (423)
T ss_pred CCceEeecccceEEEEEeecccceeeeecC-cceeEeecccccceeeecCC-----------------CCceeecCCCCC
Confidence 77888888887777778 454 4444333 46777777777777776544 334677899877
Q ss_pred eEEEeeccc----cccccEEEeCCCCEEEEEeCCCCeEEEEEeCC
Q 018474 181 ETTVLHEGF----YFANGIALSKNEDFVVVCESWKFRCRRYWLKG 221 (355)
Q Consensus 181 ~~~~~~~~~----~~pngi~~~~dg~~l~v~~~~~~~i~~~~~~~ 221 (355)
.-..+...+ ..-.++..+|...+.+++.+..+.+..+|++.
T Consensus 333 ~gs~v~~s~~gH~nwVssvkwsp~~~~~~~S~S~D~t~klWDvRS 377 (423)
T KOG0313|consen 333 DGSVVSQSLIGHKNWVSSVKWSPTNEFQLVSGSYDNTVKLWDVRS 377 (423)
T ss_pred CCceeEEeeecchhhhhheecCCCCceEEEEEecCCeEEEEEecc
Confidence 544443222 23457888999889999999999999999854
No 269
>KOG4328 consensus WD40 protein [Function unknown]
Probab=89.97 E-value=18 Score=34.35 Aligned_cols=148 Identities=11% Similarity=0.099 Sum_probs=79.7
Q ss_pred CceEEEeeC-CCeEEEEecCCEEEEEEcCCCeeEEeeccCC---CcccCeEEC-CCCCEEEEeCCCcEEEEc-C-CC--e
Q 018474 54 PEDVSVVVS-KGALYTATRDGWVKYFILHNETLVNWKHIDS---QSLLGLTTT-KDGGVILCDNEKGLLKVT-E-EG--V 124 (355)
Q Consensus 54 p~~i~~d~~-~g~l~~~~~~g~i~~~~~~~g~~~~~~~~~~---~p~~gl~~d-~~g~L~v~~~~~gl~~~~-~-~g--~ 124 (355)
-.+|.+.|. ...+|..+++|.|...|.+.+.++.+..... .-. ++.+. +++.+++++..+..-.+| . .| .
T Consensus 237 Vs~l~F~P~n~s~i~ssSyDGtiR~~D~~~~i~e~v~s~~~d~~~fs-~~d~~~e~~~vl~~~~~G~f~~iD~R~~~s~~ 315 (498)
T KOG4328|consen 237 VSGLKFSPANTSQIYSSSYDGTIRLQDFEGNISEEVLSLDTDNIWFS-SLDFSAESRSVLFGDNVGNFNVIDLRTDGSEY 315 (498)
T ss_pred ccceEecCCChhheeeeccCceeeeeeecchhhHHHhhcCccceeee-eccccCCCccEEEeecccceEEEEeecCCccc
Confidence 346666643 3457888889998888887776655443211 122 33333 456788877665333444 2 23 2
Q ss_pred EEEcCCcCCcccEEEccCCcEEEEeCCCCCCCccccccccccCCCCeEEEEeCCC--CeEEEeec---cccccccEEEeC
Q 018474 125 EAIVPDASFTNDVIAASDGTLYFTVASTKYTPTDFYKDMAEGKPYGQLRKYDPKL--KETTVLHE---GFYFANGIALSK 199 (355)
Q Consensus 125 ~~~~~~~~~~~~l~~d~dG~ly~~d~~~~~~~~~~~~~~~~~~~~g~l~~~dp~~--~~~~~~~~---~~~~pngi~~~~ 199 (355)
..+......++++++.|-.--++++.+. .+..-.||... ++...+.. .-..-|...|||
T Consensus 316 ~~~~lh~kKI~sv~~NP~~p~~laT~s~----------------D~T~kIWD~R~l~~K~sp~lst~~HrrsV~sAyFSP 379 (498)
T KOG4328|consen 316 ENLRLHKKKITSVALNPVCPWFLATASL----------------DQTAKIWDLRQLRGKASPFLSTLPHRRSVNSAYFSP 379 (498)
T ss_pred hhhhhhhcccceeecCCCCchheeeccc----------------CcceeeeehhhhcCCCCcceecccccceeeeeEEcC
Confidence 2221111478889988866434433321 11222233211 11110111 112246778999
Q ss_pred CCCEEEEEeCCCCeEEEEEe
Q 018474 200 NEDFVVVCESWKFRCRRYWL 219 (355)
Q Consensus 200 dg~~l~v~~~~~~~i~~~~~ 219 (355)
++.. +++....+.|..|+.
T Consensus 380 s~gt-l~TT~~D~~IRv~ds 398 (498)
T KOG4328|consen 380 SGGT-LLTTCQDNEIRVFDS 398 (498)
T ss_pred CCCc-eEeeccCCceEEeec
Confidence 9986 667677889999986
No 270
>KOG0645 consensus WD40 repeat protein [General function prediction only]
Probab=89.91 E-value=13 Score=32.83 Aligned_cols=150 Identities=13% Similarity=0.089 Sum_probs=90.7
Q ss_pred CCceEEEeeCCCe-EEEEecCCEEEEEEcCCC-ee--EEeeccC--CCcccCeEECCCCCEEEEeCCCcEEEEc-C-CC-
Q 018474 53 HPEDVSVVVSKGA-LYTATRDGWVKYFILHNE-TL--VNWKHID--SQSLLGLTTTKDGGVILCDNEKGLLKVT-E-EG- 123 (355)
Q Consensus 53 ~p~~i~~d~~~g~-l~~~~~~g~i~~~~~~~g-~~--~~~~~~~--~~p~~gl~~d~~g~L~v~~~~~gl~~~~-~-~g- 123 (355)
.-=++++.|..|. |+.+..+..|..++...+ .+ +.....+ ..+. .+++.|.|++..+.+......+. + ++
T Consensus 16 r~W~~awhp~~g~ilAscg~Dk~vriw~~~~~~s~~ck~vld~~hkrsVR-svAwsp~g~~La~aSFD~t~~Iw~k~~~e 94 (312)
T KOG0645|consen 16 RVWSVAWHPGKGVILASCGTDKAVRIWSTSSGDSWTCKTVLDDGHKRSVR-SVAWSPHGRYLASASFDATVVIWKKEDGE 94 (312)
T ss_pred cEEEEEeccCCceEEEeecCCceEEEEecCCCCcEEEEEeccccchheee-eeeecCCCcEEEEeeccceEEEeecCCCc
Confidence 3457788854255 555666787777776422 22 2222211 2355 88999999966665556655555 3 44
Q ss_pred eEEEc---CCcCCcccEEEccCCcEEEEeCCCCCCCccccccccccCCCCeEEEEeCCCCeEEEe---eccccccccEEE
Q 018474 124 VEAIV---PDASFTNDVIAASDGTLYFTVASTKYTPTDFYKDMAEGKPYGQLRKYDPKLKETTVL---HEGFYFANGIAL 197 (355)
Q Consensus 124 ~~~~~---~~~~~~~~l~~d~dG~ly~~d~~~~~~~~~~~~~~~~~~~~g~l~~~dp~~~~~~~~---~~~~~~pngi~~ 197 (355)
++.+. ...+.+-+++.+++|++..+-+..+ ..-++..| +.++++.. ....+--..+.+
T Consensus 95 fecv~~lEGHEnEVK~Vaws~sG~~LATCSRDK---------------SVWiWe~d-eddEfec~aVL~~HtqDVK~V~W 158 (312)
T KOG0645|consen 95 FECVATLEGHENEVKCVAWSASGNYLATCSRDK---------------SVWIWEID-EDDEFECIAVLQEHTQDVKHVIW 158 (312)
T ss_pred eeEEeeeeccccceeEEEEcCCCCEEEEeeCCC---------------eEEEEEec-CCCcEEEEeeeccccccccEEEE
Confidence 55433 2337888999999999887765411 12233344 23455433 223333457888
Q ss_pred eCCCCEEEEEeCCCCeEEEEEeC
Q 018474 198 SKNEDFVVVCESWKFRCRRYWLK 220 (355)
Q Consensus 198 ~~dg~~l~v~~~~~~~i~~~~~~ 220 (355)
+|-.. |+++.+..+.|..|+-.
T Consensus 159 HPt~d-lL~S~SYDnTIk~~~~~ 180 (312)
T KOG0645|consen 159 HPTED-LLFSCSYDNTIKVYRDE 180 (312)
T ss_pred cCCcc-eeEEeccCCeEEEEeec
Confidence 99776 77777888888888754
No 271
>PF07172 GRP: Glycine rich protein family; InterPro: IPR010800 This family consists of glycine rich proteins. Some of them may be involved in resistance to environmental stress [].
Probab=89.90 E-value=0.28 Score=36.22 Aligned_cols=20 Identities=40% Similarity=0.492 Sum_probs=13.8
Q ss_pred CChhhHHHHHHHHHHHHHhc
Q 018474 1 MAPKSFLLACLLAFTVQIFF 20 (355)
Q Consensus 1 ~~~~~~~~~~~~~~~~~~~~ 20 (355)
|+||.||++++++++++++.
T Consensus 1 MaSK~~llL~l~LA~lLlis 20 (95)
T PF07172_consen 1 MASKAFLLLGLLLAALLLIS 20 (95)
T ss_pred CchhHHHHHHHHHHHHHHHH
Confidence 99999888887544444433
No 272
>KOG2919 consensus Guanine nucleotide-binding protein [General function prediction only]
Probab=89.61 E-value=12 Score=33.91 Aligned_cols=135 Identities=10% Similarity=0.074 Sum_probs=74.1
Q ss_pred eEEEEeCCCCeEEEee------ccccccccEEEeCCCCEEEEEeCCCCeEEEEEeCCC--CCcceeEecccCCC---CcC
Q 018474 171 QLRKYDPKLKETTVLH------EGFYFANGIALSKNEDFVVVCESWKFRCRRYWLKGD--RAGILDAFIENLPG---GPD 239 (355)
Q Consensus 171 ~l~~~dp~~~~~~~~~------~~~~~pngi~~~~dg~~l~v~~~~~~~i~~~~~~~~--~~~~~~~~~~~~~g---~p~ 239 (355)
-|-.||.-+|+.+.-. +.+..+..++|+|||..||... +.+|..|+...+ ....+.++..+..| ...
T Consensus 134 PIh~wdaftG~lraSy~~ydh~de~taAhsL~Fs~DGeqlfaGy--krcirvFdt~RpGr~c~vy~t~~~~k~gq~giis 211 (406)
T KOG2919|consen 134 PIHLWDAFTGKLRASYRAYDHQDEYTAAHSLQFSPDGEQLFAGY--KRCIRVFDTSRPGRDCPVYTTVTKGKFGQKGIIS 211 (406)
T ss_pred ceeeeeccccccccchhhhhhHHhhhhheeEEecCCCCeEeecc--cceEEEeeccCCCCCCcchhhhhcccccccceee
Confidence 4556666667655332 2234567799999999877653 578999997321 11111112111111 111
Q ss_pred ceEECCC--CCEEEEeecCCchhhHhhhcchhHHHHHHhccchhhcccCCCCCCceEEEEEeCCCCeEEEEEECCCCCcc
Q 018474 240 NINLAPD--GSFWIGLIKMNQTGVRAIQKCREKWELLDAYPGLISLLLPMGSDAGARVVKVDGNDGKIIRDFNDPDATYI 317 (355)
Q Consensus 240 ~i~~d~~--G~lwv~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~g~~~~~~~~~~g~~~ 317 (355)
=+++.+. +.+=+++...+ -+|++-+ ++..+..+..+.|.
T Consensus 212 c~a~sP~~~~~~a~gsY~q~-----------------------------------~giy~~~--~~~pl~llggh~gG-- 252 (406)
T KOG2919|consen 212 CFAFSPMDSKTLAVGSYGQR-----------------------------------VGIYNDD--GRRPLQLLGGHGGG-- 252 (406)
T ss_pred eeeccCCCCcceeeecccce-----------------------------------eeeEecC--CCCceeeecccCCC--
Confidence 1233332 23333333311 1333322 45556666665553
Q ss_pred cceeEE--EEeCCEEEEeecCCCeEEEeeCCCC
Q 018474 318 SFVTSA--AEFDGNLYLASLQSNFIGILPLDGP 348 (355)
Q Consensus 318 ~~~~~~--~~~~g~L~v~~~~~~~i~~~~~~~~ 348 (355)
+|-+ ++++++||.|....++|..-+++..
T Consensus 253 --vThL~~~edGn~lfsGaRk~dkIl~WDiR~~ 283 (406)
T KOG2919|consen 253 --VTHLQWCEDGNKLFSGARKDDKILCWDIRYS 283 (406)
T ss_pred --eeeEEeccCcCeecccccCCCeEEEEeehhc
Confidence 4433 4677899999999999998877654
No 273
>KOG1272 consensus WD40-repeat-containing subunit of the 18S rRNA processing complex [RNA processing and modification]
Probab=89.60 E-value=1.9 Score=40.67 Aligned_cols=183 Identities=9% Similarity=0.022 Sum_probs=86.0
Q ss_pred CCCceEEEeeCCCeEEEEecCCEEEEEEcCCCeeEEeeccCCCcccCeEECCCCCEEEEeCCCcEEEEcCCC--eEEEcC
Q 018474 52 NHPEDVSVVVSKGALYTATRDGWVKYFILHNETLVNWKHIDSQSLLGLTTTKDGGVILCDNEKGLLKVTEEG--VEAIVP 129 (355)
Q Consensus 52 ~~p~~i~~d~~~g~l~~~~~~g~i~~~~~~~g~~~~~~~~~~~p~~gl~~d~~g~L~v~~~~~gl~~~~~~g--~~~~~~ 129 (355)
.+|-.+-..+.+..+.++...|.|..+|-.++++..-........ .+.+-.+..+|..--..-+|.||..| ++-+..
T Consensus 130 FGPY~~~ytrnGrhlllgGrKGHlAa~Dw~t~~L~~Ei~v~Etv~-Dv~~LHneq~~AVAQK~y~yvYD~~GtElHClk~ 208 (545)
T KOG1272|consen 130 FGPYHLDYTRNGRHLLLGGRKGHLAAFDWVTKKLHFEINVMETVR-DVTFLHNEQFFAVAQKKYVYVYDNNGTELHCLKR 208 (545)
T ss_pred cCCeeeeecCCccEEEecCCccceeeeecccceeeeeeehhhhhh-hhhhhcchHHHHhhhhceEEEecCCCcEEeehhh
Confidence 689999999777778888888999999987776532111111122 22221121222111122355565555 333322
Q ss_pred CcCCcccEEEccCCcEEEEeCCCCCCCccccccccccCCCCeEEEEeCCCCeEEE-eeccccccccEEEeCCCCEEEEEe
Q 018474 130 DASFTNDVIAASDGTLYFTVASTKYTPTDFYKDMAEGKPYGQLRKYDPKLKETTV-LHEGFYFANGIALSKNEDFVVVCE 208 (355)
Q Consensus 130 ~~~~~~~l~~d~dG~ly~~d~~~~~~~~~~~~~~~~~~~~g~l~~~dp~~~~~~~-~~~~~~~pngi~~~~dg~~l~v~~ 208 (355)
. ..++.+.+-|-..|.++.+. .|.+-.-|-.+|++.. +..+.....-++-.|-+..+.+..
T Consensus 209 ~-~~v~rLeFLPyHfLL~~~~~-----------------~G~L~Y~DVS~GklVa~~~t~~G~~~vm~qNP~NaVih~Gh 270 (545)
T KOG1272|consen 209 H-IRVARLEFLPYHFLLVAASE-----------------AGFLKYQDVSTGKLVASIRTGAGRTDVMKQNPYNAVIHLGH 270 (545)
T ss_pred c-Cchhhhcccchhheeeeccc-----------------CCceEEEeechhhhhHHHHccCCccchhhcCCccceEEEcC
Confidence 1 23333444444434444322 2223223444443211 111111111222333333233322
Q ss_pred CCCCeEEEEEeCCCCCcceeEecccCCCCcCceEECCCCCEEEEeecCC
Q 018474 209 SWKFRCRRYWLKGDRAGILDAFIENLPGGPDNINLAPDGSFWIGLIKMN 257 (355)
Q Consensus 209 ~~~~~i~~~~~~~~~~~~~~~~~~~~~g~p~~i~~d~~G~lwv~~~~~~ 257 (355)
.++.|..|.++... --.+.+ ...|--..+++|++|++.+++...+
T Consensus 271 -snGtVSlWSP~ske-PLvKiL--cH~g~V~siAv~~~G~YMaTtG~Dr 315 (545)
T KOG1272|consen 271 -SNGTVSLWSPNSKE-PLVKIL--CHRGPVSSIAVDRGGRYMATTGLDR 315 (545)
T ss_pred -CCceEEecCCCCcc-hHHHHH--hcCCCcceEEECCCCcEEeeccccc
Confidence 34555555543210 001111 3445467899999999988887654
No 274
>KOG0265 consensus U5 snRNP-specific protein-like factor and related proteins [RNA processing and modification]
Probab=89.42 E-value=16 Score=32.88 Aligned_cols=111 Identities=11% Similarity=0.114 Sum_probs=75.0
Q ss_pred CCcccCeEECCCCCEEEEeCCC-cEEEEcCCC----eEEEcCCcCCcccEEEccCCcEEEEeCCCCCCCccccccccccC
Q 018474 93 SQSLLGLTTTKDGGVILCDNEK-GLLKVTEEG----VEAIVPDASFTNDVIAASDGTLYFTVASTKYTPTDFYKDMAEGK 167 (355)
Q Consensus 93 ~~p~~gl~~d~~g~L~v~~~~~-gl~~~~~~g----~~~~~~~~~~~~~l~~d~dG~ly~~d~~~~~~~~~~~~~~~~~~ 167 (355)
+.++ .+.++|+|..+++...+ .|+..+..| .-.+......+.++...+|++..++-+.
T Consensus 48 geI~-~~~F~P~gs~~aSgG~Dr~I~LWnv~gdceN~~~lkgHsgAVM~l~~~~d~s~i~S~gt---------------- 110 (338)
T KOG0265|consen 48 GEIY-TIKFHPDGSCFASGGSDRAIVLWNVYGDCENFWVLKGHSGAVMELHGMRDGSHILSCGT---------------- 110 (338)
T ss_pred ceEE-EEEECCCCCeEeecCCcceEEEEeccccccceeeeccccceeEeeeeccCCCEEEEecC----------------
Confidence 4567 78899999988876544 354444222 2222222267888999999987777554
Q ss_pred CCCeEEEEeCCCCeEE-EeeccccccccEEEeCCCCEEEEEeCCCCeEEEEEeCC
Q 018474 168 PYGQLRKYDPKLKETT-VLHEGFYFANGIALSKNEDFVVVCESWKFRCRRYWLKG 221 (355)
Q Consensus 168 ~~g~l~~~dp~~~~~~-~~~~~~~~pngi~~~~dg~~l~v~~~~~~~i~~~~~~~ 221 (355)
.-.++.||.++|+.. .+.....+-|.++.+.-|-.++.+.+..+.+..||+..
T Consensus 111 -Dk~v~~wD~~tG~~~rk~k~h~~~vNs~~p~rrg~~lv~SgsdD~t~kl~D~R~ 164 (338)
T KOG0265|consen 111 -DKTVRGWDAETGKRIRKHKGHTSFVNSLDPSRRGPQLVCSGSDDGTLKLWDIRK 164 (338)
T ss_pred -CceEEEEecccceeeehhccccceeeecCccccCCeEEEecCCCceEEEEeecc
Confidence 347899999888654 33334456677776667777888888888888898853
No 275
>PF01731 Arylesterase: Arylesterase; InterPro: IPR002640 The serum paraoxonases/arylesterases are enzymes that catalyse the hydrolysis of the toxic metabolites of a variety of organophosphorus insecticides. The enzymes hydrolyse a broad spectrum of organophosphate substrates, including paraoxon and a number of aromatic carboxylic acid esters (e.g., phenyl acetate), and hence confer resistance to organophosphate toxicity []. Mammals have 3 distinct paraoxonase types, termed PON1-3 [, ]. In mice and humans, the PON genes are found on the same chromosome in close proximity. PON activity has been found in variety of tissues, with highest levels in liver and serum - the source of serum PON is thought to be the liver. Unlike mammals, fish and avian species lack paraoxonase activity. Human and rabbit PONs appear to have two distinct Ca2+ binding sites, one required for stability and one required for catalytic activity. The Ca2+ dependency of PONs suggests a mechanism of hydrolysis where Ca2+ acts as the electrophillic catalyst, like that proposed for phospholipase A2. The paraoxonase enzymes, PON1 and PON3, are high density lipoprotein (HDL)- associated proteins capable of preventing oxidative modification of low density lipoproteins (LPL) []. Although PON2 has oxidative properties, the enzyme does not associate with HDL. Within a given species, PON1, PON2 and PON3 share ~60% amino acid sequence identity, whereas between mammalian species particular PONs (1,2 or 3) share 79-90% identity at the amino acid level. Human PON1 and PON3 share numerous conserved phosphorylation and N-glycosylation sites; however, it is not known whether the PON proteins are modified at these sites, or whether modification at these sites is required for activity in vivo []. This family consists of arylesterases (Also known as serum paraoxonase) 3.1.1.2 from EC. These enzymes hydrolyse organophosphorus esters such as paraoxon and are found in the liver and blood. They confer resistance to organophosphate toxicity []. Human arylesterase (PON1) P27169 from SWISSPROT is associated with HDL and may protect against LDL oxidation [].; GO: 0004064 arylesterase activity
Probab=89.32 E-value=1.1 Score=32.35 Aligned_cols=37 Identities=19% Similarity=0.320 Sum_probs=26.7
Q ss_pred cEEEEcCCCeEEEcCCcCCcccEEEccCC-cEEEEeCC
Q 018474 115 GLLKVTEEGVEAIVPDASFTNDVIAASDG-TLYFTVAS 151 (355)
Q Consensus 115 gl~~~~~~g~~~~~~~~~~~~~l~~d~dG-~ly~~d~~ 151 (355)
.++.++++..+..+....+||+|.+++++ .||+++..
T Consensus 37 ~Vvyyd~~~~~~va~g~~~aNGI~~s~~~k~lyVa~~~ 74 (86)
T PF01731_consen 37 NVVYYDGKEVKVVASGFSFANGIAISPDKKYLYVASSL 74 (86)
T ss_pred eEEEEeCCEeEEeeccCCCCceEEEcCCCCEEEEEecc
Confidence 45555543355556666899999999987 79998765
No 276
>KOG1524 consensus WD40 repeat-containing protein CHE-2 [General function prediction only]
Probab=89.25 E-value=22 Score=34.54 Aligned_cols=96 Identities=14% Similarity=0.130 Sum_probs=58.2
Q ss_pred CCceEEEeeCCCeEEEEecCCEEEEEEcCCCeeEEeec-cCCCcccCeEECCCCCEEEEeCCCcEEEEc-CCC-e-EEEc
Q 018474 53 HPEDVSVVVSKGALYTATRDGWVKYFILHNETLVNWKH-IDSQSLLGLTTTKDGGVILCDNEKGLLKVT-EEG-V-EAIV 128 (355)
Q Consensus 53 ~p~~i~~d~~~g~l~~~~~~g~i~~~~~~~g~~~~~~~-~~~~p~~gl~~d~~g~L~v~~~~~gl~~~~-~~g-~-~~~~ 128 (355)
+|.+..-....+.+.+++.||++..++. .|+.++-.. ..+... +=.+.++|.=.++...+|.+++- ++| + .+++
T Consensus 65 ~~rs~~~g~~~d~~~i~s~DGkf~il~k-~~rVE~sv~AH~~A~~-~gRW~~dGtgLlt~GEDG~iKiWSrsGMLRStl~ 142 (737)
T KOG1524|consen 65 GGRSSGGGKGSDTLLICSNDGRFVILNK-SARVERSISAHAAAIS-SGRWSPDGAGLLTAGEDGVIKIWSRSGMLRSTVV 142 (737)
T ss_pred cccccCCCCCcceEEEEcCCceEEEecc-cchhhhhhhhhhhhhh-hcccCCCCceeeeecCCceEEEEeccchHHHHHh
Confidence 3333333323456777888898877765 666544221 122233 44567888766666667888776 688 4 3344
Q ss_pred CCcCCcccEEEccCC-cEEEEeC
Q 018474 129 PDASFTNDVIAASDG-TLYFTVA 150 (355)
Q Consensus 129 ~~~~~~~~l~~d~dG-~ly~~d~ 150 (355)
.....+.+++.+|+. ++.++..
T Consensus 143 Q~~~~v~c~~W~p~S~~vl~c~g 165 (737)
T KOG1524|consen 143 QNEESIRCARWAPNSNSIVFCQG 165 (737)
T ss_pred hcCceeEEEEECCCCCceEEecC
Confidence 444678888888875 5666643
No 277
>KOG0295 consensus WD40 repeat-containing protein [Function unknown]
Probab=88.68 E-value=20 Score=33.10 Aligned_cols=164 Identities=14% Similarity=0.120 Sum_probs=82.5
Q ss_pred CCCceEEEeeCCCeEEEEecCCEEEEEEcCCCeeEE-eeccCCCcccCeEECCCCCEEEEeCCCcEEEEc--CCC--eEE
Q 018474 52 NHPEDVSVVVSKGALYTATRDGWVKYFILHNETLVN-WKHIDSQSLLGLTTTKDGGVILCDNEKGLLKVT--EEG--VEA 126 (355)
Q Consensus 52 ~~p~~i~~d~~~g~l~~~~~~g~i~~~~~~~g~~~~-~~~~~~~p~~gl~~d~~g~L~v~~~~~gl~~~~--~~g--~~~ 126 (355)
..-.++++-|.++.+..++.|..|..++..+|--.. +........ -++...||+|+.+.....-+++- .++ ...
T Consensus 194 h~vS~V~f~P~gd~ilS~srD~tik~We~~tg~cv~t~~~h~ewvr-~v~v~~DGti~As~s~dqtl~vW~~~t~~~k~~ 272 (406)
T KOG0295|consen 194 HGVSSVFFLPLGDHILSCSRDNTIKAWECDTGYCVKTFPGHSEWVR-MVRVNQDGTIIASCSNDQTLRVWVVATKQCKAE 272 (406)
T ss_pred cceeeEEEEecCCeeeecccccceeEEecccceeEEeccCchHhEE-EEEecCCeeEEEecCCCceEEEEEeccchhhhh
Confidence 445566777667777777888999888887774332 221112234 55666788887765554434433 122 111
Q ss_pred EcCCcCCcccEEEccCCc---EEEEeCCCCCCCccccccccccCCCCeEEEEeCCCCeEE-EeeccccccccEEEeCCCC
Q 018474 127 IVPDASFTNDVIAASDGT---LYFTVASTKYTPTDFYKDMAEGKPYGQLRKYDPKLKETT-VLHEGFYFANGIALSKNED 202 (355)
Q Consensus 127 ~~~~~~~~~~l~~d~dG~---ly~~d~~~~~~~~~~~~~~~~~~~~g~l~~~dp~~~~~~-~~~~~~~~pngi~~~~dg~ 202 (355)
+.....-+..+++.+.-. +..+.++ .+-..-...+...+.+-.||-.++..- ++......-.+++++|.|+
T Consensus 273 lR~hEh~vEci~wap~~~~~~i~~at~~-----~~~~~~l~s~SrDktIk~wdv~tg~cL~tL~ghdnwVr~~af~p~Gk 347 (406)
T KOG0295|consen 273 LREHEHPVECIAWAPESSYPSISEATGS-----TNGGQVLGSGSRDKTIKIWDVSTGMCLFTLVGHDNWVRGVAFSPGGK 347 (406)
T ss_pred hhccccceEEEEecccccCcchhhccCC-----CCCccEEEeecccceEEEEeccCCeEEEEEecccceeeeeEEcCCCe
Confidence 111100111111111100 0000000 000000111223445666777777532 2223334567899999999
Q ss_pred EEEEEeCCCCeEEEEEeCCC
Q 018474 203 FVVVCESWKFRCRRYWLKGD 222 (355)
Q Consensus 203 ~l~v~~~~~~~i~~~~~~~~ 222 (355)
+++-+. .++.|.+|+++..
T Consensus 348 yi~Sca-DDktlrvwdl~~~ 366 (406)
T KOG0295|consen 348 YILSCA-DDKTLRVWDLKNL 366 (406)
T ss_pred EEEEEe-cCCcEEEEEeccc
Confidence 766554 5678999998653
No 278
>KOG1215 consensus Low-density lipoprotein receptors containing Ca2+-binding EGF-like domains [Signal transduction mechanisms]
Probab=88.01 E-value=39 Score=35.79 Aligned_cols=154 Identities=13% Similarity=0.169 Sum_probs=91.3
Q ss_pred CCCceEEEeeCCCeEEEEe-cCCEEEEEEcCCCeeEE-eeccCCCcccCeEECC-CCCEEEEeCCCcEEEEc-CCC--eE
Q 018474 52 NHPEDVSVVVSKGALYTAT-RDGWVKYFILHNETLVN-WKHIDSQSLLGLTTTK-DGGVILCDNEKGLLKVT-EEG--VE 125 (355)
Q Consensus 52 ~~p~~i~~d~~~g~l~~~~-~~g~i~~~~~~~g~~~~-~~~~~~~p~~gl~~d~-~g~L~v~~~~~gl~~~~-~~g--~~ 125 (355)
..+..+..+..++.+|... ....|.+.......... .....-.+. +++.|. .+++|.++.......+. .+| .+
T Consensus 437 ~~~~~~d~d~~~~~i~~~d~~~~~i~~~~~~~~~~~~~~~~g~~~~~-~lavD~~~~~~y~tDe~~~~i~v~~~~g~~~~ 515 (877)
T KOG1215|consen 437 KNAVALDFDVLNNRIYWADLSDEKICRASQDGSSECELCGDGLCIPE-GLAVDWIGDNIYWTDEGNCLIEVADLDGSSRK 515 (877)
T ss_pred ccceEEEEEecCCEEEEEeccCCeEeeeccCCCccceEeccCccccC-cEEEEeccCCceecccCCceeEEEEccCCcee
Confidence 4555556665555666543 45666666553322222 222223467 999994 55789888665444443 355 23
Q ss_pred EEcCC-cCCcccEEEcc-CCcEEEEeCCCCCCCccccccccccCCCCeEEEEeCCCCeEEE-eeccccccccEEEeCCCC
Q 018474 126 AIVPD-ASFTNDVIAAS-DGTLYFTVASTKYTPTDFYKDMAEGKPYGQLRKYDPKLKETTV-LHEGFYFANGIALSKNED 202 (355)
Q Consensus 126 ~~~~~-~~~~~~l~~d~-dG~ly~~d~~~~~~~~~~~~~~~~~~~~g~l~~~dp~~~~~~~-~~~~~~~pngi~~~~dg~ 202 (355)
.+... ...|..+++++ .|.+|+++.... . .+-+=..+...... +..+...|||++++--.+
T Consensus 516 vl~~~~l~~~r~~~v~p~~g~~~wtd~~~~---------------~-~i~ra~~dg~~~~~l~~~~~~~p~glt~d~~~~ 579 (877)
T KOG1215|consen 516 VLVSKDLDLPRSIAVDPEKGLMFWTDWGQP---------------P-RIERASLDGSERAVLVTNGILWPNGLTIDYETD 579 (877)
T ss_pred EEEecCCCCccceeeccccCeeEEecCCCC---------------c-hhhhhcCCCCCceEEEeCCccCCCcceEEeecc
Confidence 33332 26899999998 578888887621 0 11111111122222 233467899999998888
Q ss_pred EEEEEeCCCC-eEEEEEeCCC
Q 018474 203 FVVVCESWKF-RCRRYWLKGD 222 (355)
Q Consensus 203 ~l~v~~~~~~-~i~~~~~~~~ 222 (355)
.+||++.... .+...+.+|.
T Consensus 580 ~~yw~d~~~~~~i~~~~~~g~ 600 (877)
T KOG1215|consen 580 RLYWADAKLDYTIESANMDGQ 600 (877)
T ss_pred eeEEEcccCCcceeeeecCCC
Confidence 8999998776 6778777653
No 279
>KOG0643 consensus Translation initiation factor 3, subunit i (eIF-3i)/TGF-beta receptor-interacting protein (TRIP-1) [Translation, ribosomal structure and biogenesis; Signal transduction mechanisms]
Probab=87.89 E-value=19 Score=31.92 Aligned_cols=181 Identities=10% Similarity=0.057 Sum_probs=96.7
Q ss_pred EEeeCCCeEEEEecCCEEEEEEcCCC-eeEEeeccCCCcccCeEECCCCCEEEEeCCCc-EEEEc-CCC--eEEEcCCcC
Q 018474 58 SVVVSKGALYTATRDGWVKYFILHNE-TLVNWKHIDSQSLLGLTTTKDGGVILCDNEKG-LLKVT-EEG--VEAIVPDAS 132 (355)
Q Consensus 58 ~~d~~~g~l~~~~~~g~i~~~~~~~g-~~~~~~~~~~~p~~gl~~d~~g~L~v~~~~~g-l~~~~-~~g--~~~~~~~~~ 132 (355)
-...+++.||.+..|.....+-..+| ++-.|.-..+.+. ++.+|.+-+..++.+.+. +...| ++| +-.+..+ .
T Consensus 17 KyN~eGDLlFscaKD~~~~vw~s~nGerlGty~GHtGavW-~~Did~~s~~liTGSAD~t~kLWDv~tGk~la~~k~~-~ 94 (327)
T KOG0643|consen 17 KYNREGDLLFSCAKDSTPTVWYSLNGERLGTYDGHTGAVW-CCDIDWDSKHLITGSADQTAKLWDVETGKQLATWKTN-S 94 (327)
T ss_pred EecCCCcEEEEecCCCCceEEEecCCceeeeecCCCceEE-EEEecCCcceeeeccccceeEEEEcCCCcEEEEeecC-C
Confidence 34445667777766654433322233 3444433334566 777776666555544433 33444 567 2222222 4
Q ss_pred CcccEEEccCCcEEEEeCCCCCCCccccccccccCCCCeEEEEeCC-------CCe-EEEeeccccccccEEEeCCCCEE
Q 018474 133 FTNDVIAASDGTLYFTVASTKYTPTDFYKDMAEGKPYGQLRKYDPK-------LKE-TTVLHEGFYFANGIALSKNEDFV 204 (355)
Q Consensus 133 ~~~~l~~d~dG~ly~~d~~~~~~~~~~~~~~~~~~~~g~l~~~dp~-------~~~-~~~~~~~~~~pngi~~~~dg~~l 204 (355)
.+..+.++.+|++.+......- ...+.+..||.. ..+ +..+...-..++-..+++-++.+
T Consensus 95 ~Vk~~~F~~~gn~~l~~tD~~m------------g~~~~v~~fdi~~~~~~~~s~ep~~kI~t~~skit~a~Wg~l~~~i 162 (327)
T KOG0643|consen 95 PVKRVDFSFGGNLILASTDKQM------------GYTCFVSVFDIRDDSSDIDSEEPYLKIPTPDSKITSALWGPLGETI 162 (327)
T ss_pred eeEEEeeccCCcEEEEEehhhc------------CcceEEEEEEccCChhhhcccCceEEecCCccceeeeeecccCCEE
Confidence 5667788888876554322000 112334444432 222 23333333556667788888866
Q ss_pred EEEeCCCCeEEEEEeCCCCCcceeEecccCCCCcCceEECCCCCEEEEeec
Q 018474 205 VVCESWKFRCRRYWLKGDRAGILDAFIENLPGGPDNINLAPDGSFWIGLIK 255 (355)
Q Consensus 205 ~v~~~~~~~i~~~~~~~~~~~~~~~~~~~~~g~p~~i~~d~~G~lwv~~~~ 255 (355)
+.++ ..+.|.+|+...+.. ..+. .+......+++.+.++..++|....
T Consensus 163 i~Gh-e~G~is~~da~~g~~-~v~s-~~~h~~~Ind~q~s~d~T~FiT~s~ 210 (327)
T KOG0643|consen 163 IAGH-EDGSISIYDARTGKE-LVDS-DEEHSSKINDLQFSRDRTYFITGSK 210 (327)
T ss_pred EEec-CCCcEEEEEcccCce-eeec-hhhhccccccccccCCcceEEeccc
Confidence 5554 568899999854211 1110 1112224677889999999998755
No 280
>KOG1963 consensus WD40 repeat protein [General function prediction only]
Probab=87.73 E-value=35 Score=34.93 Aligned_cols=144 Identities=10% Similarity=0.054 Sum_probs=77.8
Q ss_pred CceEEEeeCCCeEEEEecCCEEEEEEcCCCeeEEeec----c--CCCcccCeEECCCCCEEEEeCCCcEEEE-cC---CC
Q 018474 54 PEDVSVVVSKGALYTATRDGWVKYFILHNETLVNWKH----I--DSQSLLGLTTTKDGGVILCDNEKGLLKV-TE---EG 123 (355)
Q Consensus 54 p~~i~~d~~~g~l~~~~~~g~i~~~~~~~g~~~~~~~----~--~~~p~~gl~~d~~g~L~v~~~~~gl~~~-~~---~g 123 (355)
|..|+.. ..+.+.....+..++.++...+. +.... . ..... ..++.+.++..++....|-+.+ .. ++
T Consensus 163 ~~~I~~~-~~ge~~~i~~~~~~~~~~v~~~~-~~~~~~~~~~~Htf~~t-~~~~spn~~~~Aa~d~dGrI~vw~d~~~~~ 239 (792)
T KOG1963|consen 163 PKSIVDN-NSGEFKGIVHMCKIHIYFVPKHT-KHTSSRDITVHHTFNIT-CVALSPNERYLAAGDSDGRILVWRDFGSSD 239 (792)
T ss_pred CccEEEc-CCceEEEEEEeeeEEEEEecccc-eeeccchhhhhhcccce-eEEeccccceEEEeccCCcEEEEecccccc
Confidence 8888888 45555544445557777654433 11110 0 00123 4555566665444333332222 11 11
Q ss_pred ----eEEEcCCcCCcccEEEccCCcEEEEeCCCCCCCccccccccccCCCCeEEEEeCCCCeEEEeeccccc-cccEEEe
Q 018474 124 ----VEAIVPDASFTNDVIAASDGTLYFTVASTKYTPTDFYKDMAEGKPYGQLRKYDPKLKETTVLHEGFYF-ANGIALS 198 (355)
Q Consensus 124 ----~~~~~~~~~~~~~l~~d~dG~ly~~d~~~~~~~~~~~~~~~~~~~~g~l~~~dp~~~~~~~~~~~~~~-pngi~~~ 198 (355)
.+.+.=.-..+++++++.+|...++.. ..+-+.+|..++++ +.+.+.+.. --++.++
T Consensus 240 ~~~t~t~lHWH~~~V~~L~fS~~G~~LlSGG-----------------~E~VLv~Wq~~T~~-kqfLPRLgs~I~~i~vS 301 (792)
T KOG1963|consen 240 DSETCTLLHWHHDEVNSLSFSSDGAYLLSGG-----------------REGVLVLWQLETGK-KQFLPRLGSPILHIVVS 301 (792)
T ss_pred ccccceEEEecccccceeEEecCCceEeecc-----------------cceEEEEEeecCCC-cccccccCCeeEEEEEc
Confidence 121111114689999999995544422 24556777777777 444445443 3678999
Q ss_pred CCCCEEEEEeCCCCeEEEEEe
Q 018474 199 KNEDFVVVCESWKFRCRRYWL 219 (355)
Q Consensus 199 ~dg~~l~v~~~~~~~i~~~~~ 219 (355)
||+. +|..-..++.|..+..
T Consensus 302 ~ds~-~~sl~~~DNqI~li~~ 321 (792)
T KOG1963|consen 302 PDSD-LYSLVLEDNQIHLIKA 321 (792)
T ss_pred CCCC-eEEEEecCceEEEEec
Confidence 9998 4444445678877765
No 281
>KOG0313 consensus Microtubule binding protein YTM1 (contains WD40 repeats) [Cytoskeleton]
Probab=87.38 E-value=24 Score=32.69 Aligned_cols=101 Identities=11% Similarity=0.145 Sum_probs=65.4
Q ss_pred CCCCCCCceEEEeeCCCeEEEEecCCEEEEEEcCCCeeEEeeccCCCcccCeEECCCCCEEEEeCCCcEEEE-cC-CC--
Q 018474 48 EGCVNHPEDVSVVVSKGALYTATRDGWVKYFILHNETLVNWKHIDSQSLLGLTTTKDGGVILCDNEKGLLKV-TE-EG-- 123 (355)
Q Consensus 48 ~~~~~~p~~i~~d~~~g~l~~~~~~g~i~~~~~~~g~~~~~~~~~~~p~~gl~~d~~g~L~v~~~~~gl~~~-~~-~g-- 123 (355)
+|....-.++.+. +.+.+|.++.|..|..+|..+|....-...+-..+ ++...+.-+|.++.......++ |+ ++
T Consensus 257 ~GHt~~Vs~V~w~-d~~v~yS~SwDHTIk~WDletg~~~~~~~~~ksl~-~i~~~~~~~Ll~~gssdr~irl~DPR~~~g 334 (423)
T KOG0313|consen 257 EGHTEPVSSVVWS-DATVIYSVSWDHTIKVWDLETGGLKSTLTTNKSLN-CISYSPLSKLLASGSSDRHIRLWDPRTGDG 334 (423)
T ss_pred cccccceeeEEEc-CCCceEeecccceEEEEEeecccceeeeecCccee-EeecccccceeeecCCCCceeecCCCCCCC
Confidence 4666666788888 68899999999999999998886543322222233 5666666777777666555554 54 43
Q ss_pred -e--EEEcCCcCCcccEEEccCC-cEEEEeC
Q 018474 124 -V--EAIVPDASFTNDVIAASDG-TLYFTVA 150 (355)
Q Consensus 124 -~--~~~~~~~~~~~~l~~d~dG-~ly~~d~ 150 (355)
+ ..+....+++.++...|.. ..+++.+
T Consensus 335 s~v~~s~~gH~nwVssvkwsp~~~~~~~S~S 365 (423)
T KOG0313|consen 335 SVVSQSLIGHKNWVSSVKWSPTNEFQLVSGS 365 (423)
T ss_pred ceeEEeeecchhhhhheecCCCCceEEEEEe
Confidence 2 2233333788888888765 4555433
No 282
>KOG3914 consensus WD repeat protein WDR4 [Function unknown]
Probab=87.33 E-value=19 Score=33.48 Aligned_cols=150 Identities=15% Similarity=0.144 Sum_probs=83.2
Q ss_pred CCceEEEeeCCCeEEEEecCCEEEEEEc--CCCeeEEe--eccCCCcccCeEECCC-CCEEEEeCCCcEEEEc--C-C-C
Q 018474 53 HPEDVSVVVSKGALYTATRDGWVKYFIL--HNETLVNW--KHIDSQSLLGLTTTKD-GGVILCDNEKGLLKVT--E-E-G 123 (355)
Q Consensus 53 ~p~~i~~d~~~g~l~~~~~~g~i~~~~~--~~g~~~~~--~~~~~~p~~gl~~d~~-g~L~v~~~~~gl~~~~--~-~-g 123 (355)
.+..+...+++..+++++...+.+.++- .....+.+ ....-++. .+.+..+ -...|++..+..+.++ . . +
T Consensus 64 a~~~~~~s~~~~llAv~~~~K~~~~f~~~~~~~~~kl~~~~~v~~~~~-ai~~~~~~~sv~v~dkagD~~~~di~s~~~~ 142 (390)
T KOG3914|consen 64 APALVLTSDSGRLVAVATSSKQRAVFDYRENPKGAKLLDVSCVPKRPT-AISFIREDTSVLVADKAGDVYSFDILSADSG 142 (390)
T ss_pred cccccccCCCceEEEEEeCCCceEEEEEecCCCcceeeeEeecccCcc-eeeeeeccceEEEEeecCCceeeeeeccccc
Confidence 3444444435666777777666544433 22112222 22234566 7776644 3577777666667666 2 2 5
Q ss_pred -eEEEcCCcCCcccEEEccCCcEEEEeCCCCCCCccccccccccCCCCeEEEEeCCCCeEEEeec-cccccccEEEeCCC
Q 018474 124 -VEAIVPDASFTNDVIAASDGTLYFTVASTKYTPTDFYKDMAEGKPYGQLRKYDPKLKETTVLHE-GFYFANGIALSKNE 201 (355)
Q Consensus 124 -~~~~~~~~~~~~~l~~d~dG~ly~~d~~~~~~~~~~~~~~~~~~~~g~l~~~dp~~~~~~~~~~-~~~~pngi~~~~dg 201 (355)
.+.+......+.++++++|+++.++... ...-++.+|.. +..++.+-- .-.+-..+++.++.
T Consensus 143 ~~~~~lGhvSml~dVavS~D~~~IitaDR---------------DEkIRvs~ypa-~f~IesfclGH~eFVS~isl~~~~ 206 (390)
T KOG3914|consen 143 RCEPILGHVSMLLDVAVSPDDQFIITADR---------------DEKIRVSRYPA-TFVIESFCLGHKEFVSTISLTDNY 206 (390)
T ss_pred CcchhhhhhhhhheeeecCCCCEEEEecC---------------CceEEEEecCc-ccchhhhccccHhheeeeeeccCc
Confidence 4444444578889999999876665332 00224555542 222222211 11334567776653
Q ss_pred CEEEEEeCCCCeEEEEEeCC
Q 018474 202 DFVVVCESWKFRCRRYWLKG 221 (355)
Q Consensus 202 ~~l~v~~~~~~~i~~~~~~~ 221 (355)
++++..+.+.|+.|++..
T Consensus 207 --~LlS~sGD~tlr~Wd~~s 224 (390)
T KOG3914|consen 207 --LLLSGSGDKTLRLWDITS 224 (390)
T ss_pred --eeeecCCCCcEEEEeccc
Confidence 578888899999999854
No 283
>PF13570 PQQ_3: PQQ-like domain; PDB: 3HXJ_B 3Q54_A.
Probab=87.30 E-value=1.3 Score=26.70 Aligned_cols=26 Identities=23% Similarity=0.282 Sum_probs=18.8
Q ss_pred ceEEEeeCCCeEEEEecCCEEEEEEcCC
Q 018474 55 EDVSVVVSKGALYTATRDGWVKYFILHN 82 (355)
Q Consensus 55 ~~i~~d~~~g~l~~~~~~g~i~~~~~~~ 82 (355)
.+++++ ++.+|+++.+|.++.+|+++
T Consensus 15 ~~~~v~--~g~vyv~~~dg~l~ald~~t 40 (40)
T PF13570_consen 15 SSPAVA--GGRVYVGTGDGNLYALDAAT 40 (40)
T ss_dssp S--EEC--TSEEEEE-TTSEEEEEETT-
T ss_pred cCCEEE--CCEEEEEcCCCEEEEEeCCC
Confidence 445665 78999999999999999753
No 284
>PF05935 Arylsulfotrans: Arylsulfotransferase (ASST); InterPro: IPR010262 This family consists of several bacterial arylsulphotransferase proteins. Arylsulphotransferase (ASST) transfers a sulphate group from phenolic sulphate esters to a phenolic acceptor substrate [].; PDB: 3ETT_B 3ELQ_A 3ETS_A.
Probab=87.20 E-value=22 Score=34.71 Aligned_cols=109 Identities=12% Similarity=0.118 Sum_probs=55.3
Q ss_pred EEEeeCCCeEEEEecCCEEEEEEcCCCee-EEeeccCCC---cccCeEECCCCCEEEEeC--------------CCcEEE
Q 018474 57 VSVVVSKGALYTATRDGWVKYFILHNETL-VNWKHIDSQ---SLLGLTTTKDGGVILCDN--------------EKGLLK 118 (355)
Q Consensus 57 i~~d~~~g~l~~~~~~g~i~~~~~~~g~~-~~~~~~~~~---p~~gl~~d~~g~L~v~~~--------------~~gl~~ 118 (355)
+... ++|.|+++.. +.+..+|. .|+. ..+....+. =+ .+...++|++++..+ ...++.
T Consensus 153 ~~~l-~nG~ll~~~~-~~~~e~D~-~G~v~~~~~l~~~~~~~HH-D~~~l~nGn~L~l~~~~~~~~~~~~~~~~~D~Ive 228 (477)
T PF05935_consen 153 FKQL-PNGNLLIGSG-NRLYEIDL-LGKVIWEYDLPGGYYDFHH-DIDELPNGNLLILASETKYVDEDKDVDTVEDVIVE 228 (477)
T ss_dssp EEE--TTS-EEEEEB-TEEEEE-T-T--EEEEEE--TTEE-B-S--EEE-TTS-EEEEEEETTEE-TS-EE---S-EEEE
T ss_pred eeEc-CCCCEEEecC-CceEEEcC-CCCEEEeeecCCccccccc-ccEECCCCCEEEEEeecccccCCCCccEecCEEEE
Confidence 3444 5666666655 66788887 4543 333222211 24 667778998665433 235788
Q ss_pred EcCCC--eEEEcC--------C----------c---------CCcccEEEcc-CCcEEEEeCCCCCCCccccccccccCC
Q 018474 119 VTEEG--VEAIVP--------D----------A---------SFTNDVIAAS-DGTLYFTVASTKYTPTDFYKDMAEGKP 168 (355)
Q Consensus 119 ~~~~g--~~~~~~--------~----------~---------~~~~~l~~d~-dG~ly~~d~~~~~~~~~~~~~~~~~~~ 168 (355)
++++| +..+.. . . .+.|++..++ ++.|.++...
T Consensus 229 vd~tG~vv~~wd~~d~ld~~~~~~~~~~~~~~~~~~~~~~DW~H~Nsi~yd~~dd~iivSsR~----------------- 291 (477)
T PF05935_consen 229 VDPTGEVVWEWDFFDHLDPYRDTVLKPYPYGDISGSGGGRDWLHINSIDYDPSDDSIIVSSRH----------------- 291 (477)
T ss_dssp E-TTS-EEEEEEGGGTS-TT--TTGGT--SSSSS-SSTTSBS--EEEEEEETTTTEEEEEETT-----------------
T ss_pred ECCCCCEEEEEehHHhCCcccccccccccccccccCCCCCCccccCccEEeCCCCeEEEEcCc-----------------
Confidence 88777 333210 0 0 5678888887 6688887544
Q ss_pred CCeEEEEeCCCCeEEEee
Q 018474 169 YGQLRKYDPKLKETTVLH 186 (355)
Q Consensus 169 ~g~l~~~dp~~~~~~~~~ 186 (355)
...|+.+|.+++++....
T Consensus 292 ~s~V~~Id~~t~~i~Wil 309 (477)
T PF05935_consen 292 QSAVIKIDYRTGKIKWIL 309 (477)
T ss_dssp T-EEEEEE-TTS-EEEEE
T ss_pred ceEEEEEECCCCcEEEEe
Confidence 447888887788777654
No 285
>PF14339 DUF4394: Domain of unknown function (DUF4394)
Probab=86.80 E-value=20 Score=31.18 Aligned_cols=71 Identities=11% Similarity=0.155 Sum_probs=49.4
Q ss_pred CCCceEEEeeCCCeEEEEecCCEEEEEEcCCCeeEEe--ecc----CCCcccCeEECC-CCCEEEEeCCCcEEEEcC-CC
Q 018474 52 NHPEDVSVVVSKGALYTATRDGWVKYFILHNETLVNW--KHI----DSQSLLGLTTTK-DGGVILCDNEKGLLKVTE-EG 123 (355)
Q Consensus 52 ~~p~~i~~d~~~g~l~~~~~~g~i~~~~~~~g~~~~~--~~~----~~~p~~gl~~d~-~g~L~v~~~~~gl~~~~~-~g 123 (355)
..--+|.+.|.+|.||.-...++||.+|+.+|....+ ... .+... ++-|.+ -+||-|....+.-+|+++ +|
T Consensus 27 e~l~GID~Rpa~G~LYgl~~~g~lYtIn~~tG~aT~vg~s~~~~al~g~~~-gvDFNP~aDRlRvvs~~GqNlR~npdtG 105 (236)
T PF14339_consen 27 ESLVGIDFRPANGQLYGLGSTGRLYTINPATGAATPVGASPLTVALSGTAF-GVDFNPAADRLRVVSNTGQNLRLNPDTG 105 (236)
T ss_pred CeEEEEEeecCCCCEEEEeCCCcEEEEECCCCeEEEeecccccccccCceE-EEecCcccCcEEEEccCCcEEEECCCCC
Confidence 3445667778899999887889999999999987766 211 12345 566654 357877655556788884 56
No 286
>KOG1445 consensus Tumor-specific antigen (contains WD repeats) [Cytoskeleton]
Probab=86.79 E-value=4 Score=40.22 Aligned_cols=142 Identities=17% Similarity=0.175 Sum_probs=74.0
Q ss_pred eEEEEecCCEEEEEEcCCCeeE-EeeccCCCcccCeEECCCCCEEEEeCCCcEEEEc-C-CCeEEEcCC--c--CCcccE
Q 018474 65 ALYTATRDGWVKYFILHNETLV-NWKHIDSQSLLGLTTTKDGGVILCDNEKGLLKVT-E-EGVEAIVPD--A--SFTNDV 137 (355)
Q Consensus 65 ~l~~~~~~g~i~~~~~~~g~~~-~~~~~~~~p~~gl~~d~~g~L~v~~~~~gl~~~~-~-~g~~~~~~~--~--~~~~~l 137 (355)
.|.+++++-.|..+|..+++.. .+....+.+. ++++.++|+...+-..+|-+++. + .+-+.+... . ..-..+
T Consensus 692 vLa~asyd~Ti~lWDl~~~~~~~~l~gHtdqIf-~~AWSpdGr~~AtVcKDg~~rVy~Prs~e~pv~Eg~gpvgtRgARi 770 (1012)
T KOG1445|consen 692 VLAVASYDSTIELWDLANAKLYSRLVGHTDQIF-GIAWSPDGRRIATVCKDGTLRVYEPRSREQPVYEGKGPVGTRGARI 770 (1012)
T ss_pred HhhhhhccceeeeeehhhhhhhheeccCcCcee-EEEECCCCcceeeeecCceEEEeCCCCCCCccccCCCCccCcceeE
Confidence 3445667778888887666432 2222235688 99999999988776666655554 4 332222111 1 111223
Q ss_pred EEccCCcEEEEeCCCCCCCccccccccccCCCCeEEEEeCCCCeEEEeec-cc-cccccE--EEeCCCCEEEEEeCCCCe
Q 018474 138 IAASDGTLYFTVASTKYTPTDFYKDMAEGKPYGQLRKYDPKLKETTVLHE-GF-YFANGI--ALSKNEDFVVVCESWKFR 213 (355)
Q Consensus 138 ~~d~dG~ly~~d~~~~~~~~~~~~~~~~~~~~g~l~~~dp~~~~~~~~~~-~~-~~pngi--~~~~dg~~l~v~~~~~~~ 213 (355)
...=||++.+...-.+ .....+..||..+-....+.. .+ ..|.-+ ..++|.+.++++.-+...
T Consensus 771 ~wacdgr~viv~Gfdk-------------~SeRQv~~Y~Aq~l~~~pl~t~~lDvaps~LvP~YD~Ds~~lfltGKGD~~ 837 (1012)
T KOG1445|consen 771 LWACDGRIVIVVGFDK-------------SSERQVQMYDAQTLDLRPLYTQVLDVAPSPLVPHYDYDSNVLFLTGKGDRF 837 (1012)
T ss_pred EEEecCcEEEEecccc-------------cchhhhhhhhhhhccCCcceeeeecccCccccccccCCCceEEEecCCCce
Confidence 3444554444332111 112234455543322111110 00 011111 357788899999888889
Q ss_pred EEEEEeC
Q 018474 214 CRRYWLK 220 (355)
Q Consensus 214 i~~~~~~ 220 (355)
|+.|.+-
T Consensus 838 v~~yEv~ 844 (1012)
T KOG1445|consen 838 VNMYEVI 844 (1012)
T ss_pred EEEEEec
Confidence 9999873
No 287
>PF05694 SBP56: 56kDa selenium binding protein (SBP56); InterPro: IPR008826 This family consists of several eukaryotic selenium binding proteins as well as three sequences from archaea. The exact function of this protein is unknown although it is thought that SBP56 participates in late stages of intra-Golgi protein transport []. The Lotus japonicus homologue of SBP56, LjSBP is thought to have more than one physiological role and can be implicated in controlling the oxidation/reduction status of target proteins in vesicular Golgi transport [].; GO: 0008430 selenium binding; PDB: 2ECE_A.
Probab=86.64 E-value=2.6 Score=39.98 Aligned_cols=64 Identities=22% Similarity=0.365 Sum_probs=34.1
Q ss_pred cccEEEeCCCCEEEEEeCCCCeEEEEEeCCCCCc--ceeEecc--------------cCCCCcCceEECCCC-CEEEEee
Q 018474 192 ANGIALSKNEDFVVVCESWKFRCRRYWLKGDRAG--ILDAFIE--------------NLPGGPDNINLAPDG-SFWIGLI 254 (355)
Q Consensus 192 pngi~~~~dg~~l~v~~~~~~~i~~~~~~~~~~~--~~~~~~~--------------~~~g~p~~i~~d~~G-~lwv~~~ 254 (355)
+.-|.+|.|.++||++....+.|++||++....- .-++++. .+.|-|.-+.++-|| |+||++.
T Consensus 314 itDI~iSlDDrfLYvs~W~~GdvrqYDISDP~~Pkl~gqv~lGG~~~~~~~~~v~g~~l~GgPqMvqlS~DGkRlYvTnS 393 (461)
T PF05694_consen 314 ITDILISLDDRFLYVSNWLHGDVRQYDISDPFNPKLVGQVFLGGSIRKGDHPVVKGKRLRGGPQMVQLSLDGKRLYVTNS 393 (461)
T ss_dssp ---EEE-TTS-EEEEEETTTTEEEEEE-SSTTS-EEEEEEE-BTTTT-B--TTS------S----EEE-TTSSEEEEE--
T ss_pred eEeEEEccCCCEEEEEcccCCcEEEEecCCCCCCcEEeEEEECcEeccCCCccccccccCCCCCeEEEccCCeEEEEEee
Confidence 4568899999999999999999999999764210 1112221 122345667788899 6999875
Q ss_pred c
Q 018474 255 K 255 (355)
Q Consensus 255 ~ 255 (355)
-
T Consensus 394 L 394 (461)
T PF05694_consen 394 L 394 (461)
T ss_dssp -
T ss_pred c
Confidence 3
No 288
>KOG2394 consensus WD40 protein DMR-N9 [General function prediction only]
Probab=85.77 E-value=26 Score=34.11 Aligned_cols=70 Identities=19% Similarity=0.143 Sum_probs=39.5
Q ss_pred CCcccEEEccCCcEEEEeCCCCCCCccccccccccCCCCeEEEEeCCCCeEEEeecc-ccccccEEEeCCCCEEEEEeCC
Q 018474 132 SFTNDVIAASDGTLYFTVASTKYTPTDFYKDMAEGKPYGQLRKYDPKLKETTVLHEG-FYFANGIALSKNEDFVVVCESW 210 (355)
Q Consensus 132 ~~~~~l~~d~dG~ly~~d~~~~~~~~~~~~~~~~~~~~g~l~~~dp~~~~~~~~~~~-~~~pngi~~~~dg~~l~v~~~~ 210 (355)
..+|.+++.+||....+.+. .|.|-.||=.+.++.-+... +..--.++++|||+.+.... .
T Consensus 291 g~in~f~FS~DG~~LA~VSq-----------------DGfLRvF~fdt~eLlg~mkSYFGGLLCvcWSPDGKyIvtGG-E 352 (636)
T KOG2394|consen 291 GSINEFAFSPDGKYLATVSQ-----------------DGFLRIFDFDTQELLGVMKSYFGGLLCVCWSPDGKYIVTGG-E 352 (636)
T ss_pred ccccceeEcCCCceEEEEec-----------------CceEEEeeccHHHHHHHHHhhccceEEEEEcCCccEEEecC-C
Confidence 57999999999987777654 34344444334433211111 12234688999999554433 2
Q ss_pred CCeEEEEEe
Q 018474 211 KFRCRRYWL 219 (355)
Q Consensus 211 ~~~i~~~~~ 219 (355)
+.-|.+|..
T Consensus 353 DDLVtVwSf 361 (636)
T KOG2394|consen 353 DDLVTVWSF 361 (636)
T ss_pred cceEEEEEe
Confidence 344555554
No 289
>KOG1408 consensus WD40 repeat protein [Function unknown]
Probab=85.64 E-value=44 Score=33.91 Aligned_cols=189 Identities=14% Similarity=0.168 Sum_probs=85.9
Q ss_pred CCCCceEEEeeCCCeEEEEecCCEEEEEEcCCCeeEEeec-cCCCcccCeEECC---CCCEEEEeCCCcEEEE-c-CCC-
Q 018474 51 VNHPEDVSVVVSKGALYTATRDGWVKYFILHNETLVNWKH-IDSQSLLGLTTTK---DGGVILCDNEKGLLKV-T-EEG- 123 (355)
Q Consensus 51 ~~~p~~i~~d~~~g~l~~~~~~g~i~~~~~~~g~~~~~~~-~~~~p~~gl~~d~---~g~L~v~~~~~gl~~~-~-~~g- 123 (355)
-.+-.++++.|++..|-.|...|.|..++..+-+...+.. ....+. ++-+.. ...|......++++.+ | +..
T Consensus 459 r~G~R~~~vSp~gqhLAsGDr~GnlrVy~Lq~l~~~~~~eAHesEil-cLeyS~p~~~~kLLASasrdRlIHV~Dv~rny 537 (1080)
T KOG1408|consen 459 RFGFRALAVSPDGQHLASGDRGGNLRVYDLQELEYTCFMEAHESEIL-CLEYSFPVLTNKLLASASRDRLIHVYDVKRNY 537 (1080)
T ss_pred ccceEEEEECCCcceecccCccCceEEEEehhhhhhhheecccceeE-EEeecCchhhhHhhhhccCCceEEEEeccccc
Confidence 4677889999777778788878888888763322221111 011233 333321 1123332223344443 3 111
Q ss_pred --eEEEcCCcCCcccEEEccCC-cEE-EEeCCCCCCCccccccccccCCCCeEEEEeCCCCeEEEeeccccccccEEEeC
Q 018474 124 --VEAIVPDASFTNDVIAASDG-TLY-FTVASTKYTPTDFYKDMAEGKPYGQLRKYDPKLKETTVLHEGFYFANGIALSK 199 (355)
Q Consensus 124 --~~~~~~~~~~~~~l~~d~dG-~ly-~~d~~~~~~~~~~~~~~~~~~~~g~l~~~dp~~~~~~~~~~~~~~pngi~~~~ 199 (355)
++.+......+.++.+...| +.= ++-... +..++........|.++.-...+-.-+ .-..++++|
T Consensus 538 ~l~qtld~HSssITsvKFa~~gln~~MiscGAD----ksimFr~~qk~~~g~~f~r~t~t~~kt-------TlYDm~Vdp 606 (1080)
T KOG1408|consen 538 DLVQTLDGHSSSITSVKFACNGLNRKMISCGAD----KSIMFRVNQKASSGRLFPRHTQTLSKT-------TLYDMAVDP 606 (1080)
T ss_pred chhhhhcccccceeEEEEeecCCceEEEeccCc----hhhheehhccccCceeccccccccccc-------eEEEeeeCC
Confidence 33333333455555554433 222 111110 111222222222233332111111101 123466777
Q ss_pred CCCEEEEEeCCCCeEEEEEeCCCCCcceeEecc--cCCCCcCceEECCCCCEEEEeec
Q 018474 200 NEDFVVVCESWKFRCRRYWLKGDRAGILDAFIE--NLPGGPDNINLAPDGSFWIGLIK 255 (355)
Q Consensus 200 dg~~l~v~~~~~~~i~~~~~~~~~~~~~~~~~~--~~~g~p~~i~~d~~G~lwv~~~~ 255 (355)
.-+ +.++.-....|..|+++..+ ..+.|-. ...|-+--+..|+.| +|+++.-
T Consensus 607 ~~k-~v~t~cQDrnirif~i~sgK--q~k~FKgs~~~eG~lIKv~lDPSg-iY~atSc 660 (1080)
T KOG1408|consen 607 TSK-LVVTVCQDRNIRIFDIESGK--QVKSFKGSRDHEGDLIKVILDPSG-IYLATSC 660 (1080)
T ss_pred Ccc-eEEEEecccceEEEeccccc--eeeeecccccCCCceEEEEECCCc-cEEEEee
Confidence 776 44444566788899986543 2333432 122334446789988 6666644
No 290
>KOG1538 consensus Uncharacterized conserved protein WDR10, contains WD40 repeats [General function prediction only]
Probab=85.50 E-value=24 Score=35.33 Aligned_cols=56 Identities=20% Similarity=0.233 Sum_probs=42.3
Q ss_pred CcccCeEECCCCC-EEEEeCCCcEEEEcC-CC--eEEEcCCcCCcccEEEccCCcEEEEeCC
Q 018474 94 QSLLGLTTTKDGG-VILCDNEKGLLKVTE-EG--VEAIVPDASFTNDVIAASDGTLYFTVAS 151 (355)
Q Consensus 94 ~p~~gl~~d~~g~-L~v~~~~~gl~~~~~-~g--~~~~~~~~~~~~~l~~d~dG~ly~~d~~ 151 (355)
-++ .+++.+||. |.++ .+..++.+|. +| +.++...-..++.++.+.||..+.+.+.
T Consensus 14 ci~-d~afkPDGsqL~lA-Ag~rlliyD~ndG~llqtLKgHKDtVycVAys~dGkrFASG~a 73 (1081)
T KOG1538|consen 14 CIN-DIAFKPDGTQLILA-AGSRLLVYDTSDGTLLQPLKGHKDTVYCVAYAKDGKRFASGSA 73 (1081)
T ss_pred chh-eeEECCCCceEEEe-cCCEEEEEeCCCcccccccccccceEEEEEEccCCceeccCCC
Confidence 356 789999996 5555 4668999995 66 6666555567999999999999877554
No 291
>smart00564 PQQ beta-propeller repeat. Beta-propeller repeat occurring in enzymes with pyrrolo-quinoline quinone (PQQ) as cofactor, in Ire1p-like Ser/Thr kinases, and in prokaryotic dehydrogenases.
Probab=85.29 E-value=1.8 Score=24.44 Aligned_cols=25 Identities=20% Similarity=0.380 Sum_probs=21.2
Q ss_pred CCCeEEEEecCCEEEEEEcCCCeeE
Q 018474 62 SKGALYTATRDGWVKYFILHNETLV 86 (355)
Q Consensus 62 ~~g~l~~~~~~g~i~~~~~~~g~~~ 86 (355)
.++.+|+++.+|.++.+|.++|+..
T Consensus 5 ~~~~v~~~~~~g~l~a~d~~~G~~~ 29 (33)
T smart00564 5 SDGTVYVGSTDGTLYALDAKTGEIL 29 (33)
T ss_pred ECCEEEEEcCCCEEEEEEcccCcEE
Confidence 4668999999999999999888653
No 292
>KOG0281 consensus Beta-TrCP (transducin repeats containing)/Slimb proteins [Function unknown]
Probab=84.82 E-value=12 Score=34.18 Aligned_cols=171 Identities=12% Similarity=0.094 Sum_probs=78.1
Q ss_pred CCceEEEeeCCCeEEEEecCCEEEEEEcCCCeeEEeec-cCCCcccCeEECCCCCEEEEeCCCcEEEE-c-CCC--eEEE
Q 018474 53 HPEDVSVVVSKGALYTATRDGWVKYFILHNETLVNWKH-IDSQSLLGLTTTKDGGVILCDNEKGLLKV-T-EEG--VEAI 127 (355)
Q Consensus 53 ~p~~i~~d~~~g~l~~~~~~g~i~~~~~~~g~~~~~~~-~~~~p~~gl~~d~~g~L~v~~~~~gl~~~-~-~~g--~~~~ 127 (355)
+--++..| ++.+..|..++.|..+|.++-....... ..+... ++ +-+.++.|..+.+..+++ | .+| ++++
T Consensus 199 gVYClQYD--D~kiVSGlrDnTikiWD~n~~~c~~~L~GHtGSVL-CL--qyd~rviisGSSDsTvrvWDv~tge~l~tl 273 (499)
T KOG0281|consen 199 GVYCLQYD--DEKIVSGLRDNTIKIWDKNSLECLKILTGHTGSVL-CL--QYDERVIVSGSSDSTVRVWDVNTGEPLNTL 273 (499)
T ss_pred ceEEEEec--chhhhcccccCceEEeccccHHHHHhhhcCCCcEE-ee--eccceEEEecCCCceEEEEeccCCchhhHH
Confidence 33444454 4456666666766666654333222111 112333 44 445568887666665555 4 466 5544
Q ss_pred cCCcCCcccEEEccCCcEEEEeCCCCCCCccccccccccCCCCeEEEEeCCCCeEE---EeeccccccccEEEeCCCCEE
Q 018474 128 VPDASFTNDVIAASDGTLYFTVASTKYTPTDFYKDMAEGKPYGQLRKYDPKLKETT---VLHEGFYFANGIALSKNEDFV 204 (355)
Q Consensus 128 ~~~~~~~~~l~~d~dG~ly~~d~~~~~~~~~~~~~~~~~~~~g~l~~~dp~~~~~~---~~~~~~~~pngi~~~~dg~~l 204 (355)
...-..+-++.+. + .+.++.+. ..+-+++..+..+ ..+ ++......-|-+.+ |.+ .
T Consensus 274 ihHceaVLhlrf~-n-g~mvtcSk---------------DrsiaVWdm~sps-~it~rrVLvGHrAaVNvVdf--d~k-y 332 (499)
T KOG0281|consen 274 IHHCEAVLHLRFS-N-GYMVTCSK---------------DRSIAVWDMASPT-DITLRRVLVGHRAAVNVVDF--DDK-Y 332 (499)
T ss_pred hhhcceeEEEEEe-C-CEEEEecC---------------CceeEEEeccCch-HHHHHHHHhhhhhheeeecc--ccc-e
Confidence 3322233333332 1 23333322 0122344443211 111 11111222344444 444 6
Q ss_pred EEEeCCCCeEEEEEeCCCCCcceeEecccCCCCcCceEEC-CCCCEEEEeec
Q 018474 205 VVCESWKFRCRRYWLKGDRAGILDAFIENLPGGPDNINLA-PDGSFWIGLIK 255 (355)
Q Consensus 205 ~v~~~~~~~i~~~~~~~~~~~~~~~~~~~~~g~p~~i~~d-~~G~lwv~~~~ 255 (355)
+++.++...|..++.+.. + |+..+.|.-+|++.- -.|++-|+...
T Consensus 333 IVsASgDRTikvW~~st~-----e-fvRtl~gHkRGIAClQYr~rlvVSGSS 378 (499)
T KOG0281|consen 333 IVSASGDRTIKVWSTSTC-----E-FVRTLNGHKRGIACLQYRDRLVVSGSS 378 (499)
T ss_pred EEEecCCceEEEEeccce-----e-eehhhhcccccceehhccCeEEEecCC
Confidence 777777777877776321 1 233444556777643 24556655433
No 293
>KOG4547 consensus WD40 repeat-containing protein [General function prediction only]
Probab=84.52 E-value=42 Score=32.79 Aligned_cols=115 Identities=13% Similarity=0.187 Sum_probs=67.8
Q ss_pred EEEEecCCEEEEEEcCCCeeEEeeccCCCcccCeE--E--CCCCCEEEEeCCCcEEEEc-CCC-e-EEEcCCcCCcccEE
Q 018474 66 LYTATRDGWVKYFILHNETLVNWKHIDSQSLLGLT--T--TKDGGVILCDNEKGLLKVT-EEG-V-EAIVPDASFTNDVI 138 (355)
Q Consensus 66 l~~~~~~g~i~~~~~~~g~~~~~~~~~~~p~~gl~--~--d~~g~L~v~~~~~gl~~~~-~~g-~-~~~~~~~~~~~~l~ 138 (355)
+..|+..|.|..++...|++......+.++. ... . +.-|.||-+.....+..++ +++ . ...-.....+.+++
T Consensus 73 lvlgt~~g~v~~ys~~~g~it~~~st~~h~~-~v~~~~~~~~~~ciyS~~ad~~v~~~~~~~~~~~~~~~~~~~~~~sl~ 151 (541)
T KOG4547|consen 73 LVLGTPQGSVLLYSVAGGEITAKLSTDKHYG-NVNEILDAQRLGCIYSVGADLKVVYILEKEKVIIRIWKEQKPLVSSLC 151 (541)
T ss_pred EEeecCCccEEEEEecCCeEEEEEecCCCCC-cceeeecccccCceEecCCceeEEEEecccceeeeeeccCCCccceEE
Confidence 4557788888888888888776554433332 222 2 2345666665443444455 345 2 22222336788999
Q ss_pred EccCCcEEEEeCCCCCCCccccccccccCCCCeEEEEeCCCCeEEEeecccccc-ccEEEeCC
Q 018474 139 AASDGTLYFTVASTKYTPTDFYKDMAEGKPYGQLRKYDPKLKETTVLHEGFYFA-NGIALSKN 200 (355)
Q Consensus 139 ~d~dG~ly~~d~~~~~~~~~~~~~~~~~~~~g~l~~~dp~~~~~~~~~~~~~~p-ngi~~~~d 200 (355)
+.+||.+.++-+ +.+-.||-+++++....++...| +.+.+..+
T Consensus 152 is~D~~~l~~as-------------------~~ik~~~~~~kevv~~ftgh~s~v~t~~f~~~ 195 (541)
T KOG4547|consen 152 ISPDGKILLTAS-------------------RQIKVLDIETKEVVITFTGHGSPVRTLSFTTL 195 (541)
T ss_pred EcCCCCEEEecc-------------------ceEEEEEccCceEEEEecCCCcceEEEEEEEe
Confidence 999997776533 35777887788776555554433 33444433
No 294
>KOG0306 consensus WD40-repeat-containing subunit of the 18S rRNA processing complex [RNA processing and modification]
Probab=83.60 E-value=55 Score=33.36 Aligned_cols=166 Identities=14% Similarity=0.123 Sum_probs=83.7
Q ss_pred EEEEecCCEEEEEEcCCCeeEEeecc--CCCcccCeEECCCCCEEEEeCCC-cEEEEc--C-CC-eEEEcCCcCCcccEE
Q 018474 66 LYTATRDGWVKYFILHNETLVNWKHI--DSQSLLGLTTTKDGGVILCDNEK-GLLKVT--E-EG-VEAIVPDASFTNDVI 138 (355)
Q Consensus 66 l~~~~~~g~i~~~~~~~g~~~~~~~~--~~~p~~gl~~d~~g~L~v~~~~~-gl~~~~--~-~g-~~~~~~~~~~~~~l~ 138 (355)
|-+|-.||-|..++..++.. .+... ..... .|.+|..|..++..+.+ .|+.+| . .| .+.-... ..+.+.-
T Consensus 80 lAVGYaDGsVqif~~~s~~~-~~tfngHK~AVt-~l~fd~~G~rlaSGskDt~IIvwDlV~E~Gl~rL~GHk-d~iT~~~ 156 (888)
T KOG0306|consen 80 LAVGYADGSVQIFSLESEEI-LITFNGHKAAVT-TLKFDKIGTRLASGSKDTDIIVWDLVGEEGLFRLRGHK-DSITQAL 156 (888)
T ss_pred EEEEecCceEEeeccCCCce-eeeecccccceE-EEEEcccCceEeecCCCccEEEEEeccceeeEEeecch-HHHhHHh
Confidence 45677799888888755522 22222 23355 78899888776665444 466666 2 44 3332212 1222222
Q ss_pred EccCCcEEEEeCCCCCCCccccccccccCCCCeEEEEeCCCCe-EEEeeccccccccEEEeCCCCEEEEEeCCCCeEEEE
Q 018474 139 AASDGTLYFTVASTKYTPTDFYKDMAEGKPYGQLRKYDPKLKE-TTVLHEGFYFANGIALSKNEDFVVVCESWKFRCRRY 217 (355)
Q Consensus 139 ~d~dG~ly~~d~~~~~~~~~~~~~~~~~~~~g~l~~~dp~~~~-~~~~~~~~~~pngi~~~~dg~~l~v~~~~~~~i~~~ 217 (355)
+-.+..+.++.+. .+.+-.||.++.. +++....-..-.++++++ + +.++......+..|
T Consensus 157 F~~~~~~lvS~sK-----------------Ds~iK~WdL~tqhCf~Thvd~r~Eiw~l~~~~--~-~lvt~~~dse~~v~ 216 (888)
T KOG0306|consen 157 FLNGDSFLVSVSK-----------------DSMIKFWDLETQHCFETHVDHRGEIWALVLDE--K-LLVTAGTDSELKVW 216 (888)
T ss_pred ccCCCeEEEEecc-----------------CceEEEEecccceeeeEEecccceEEEEEEec--c-eEEEEecCCceEEE
Confidence 2223344454332 2344456665542 233332223345677776 3 45555555666666
Q ss_pred Ee--CCCC--------CcceeEecccCCCCcCceEECCCCCEEEEee
Q 018474 218 WL--KGDR--------AGILDAFIENLPGGPDNINLAPDGSFWIGLI 254 (355)
Q Consensus 218 ~~--~~~~--------~~~~~~~~~~~~g~p~~i~~d~~G~lwv~~~ 254 (355)
++ +... ....-.+.....+.+.+++.|.++++.+.-.
T Consensus 217 ~L~~~~D~~~~~~~~s~~~~G~~~rqsk~R~i~l~~d~s~r~~~c~g 263 (888)
T KOG0306|consen 217 ELAFEDDEKETNRYISTKLRGTFIRQSKGREINLVTDFSDRFLVCQG 263 (888)
T ss_pred EeecccccccccccceeeccceeeeccCCceeEEeecCcccEEEEec
Confidence 65 1111 1111122222334577888998888666543
No 295
>PRK14131 N-acetylneuraminic acid mutarotase; Provisional
Probab=83.47 E-value=40 Score=31.67 Aligned_cols=88 Identities=10% Similarity=0.060 Sum_probs=43.9
Q ss_pred CCeEEEEe--cCCEEEEEEcCC--CeeEEeeccCCCcccCe-EECCCCCEEEEeCC------------CcEEEEcC-CC-
Q 018474 63 KGALYTAT--RDGWVKYFILHN--ETLVNWKHIDSQSLLGL-TTTKDGGVILCDNE------------KGLLKVTE-EG- 123 (355)
Q Consensus 63 ~g~l~~~~--~~g~i~~~~~~~--g~~~~~~~~~~~p~~gl-~~d~~g~L~v~~~~------------~gl~~~~~-~g- 123 (355)
++.+|+.. ....++++|.+. +++.........+..+. ...-++.|||.... ..+++||. +.
T Consensus 38 ~~~iyv~gG~~~~~~~~~d~~~~~~~W~~l~~~p~~~r~~~~~v~~~~~IYV~GG~~~~~~~~~~~~~~~v~~YD~~~n~ 117 (376)
T PRK14131 38 NNTVYVGLGSAGTSWYKLDLNAPSKGWTKIAAFPGGPREQAVAAFIDGKLYVFGGIGKTNSEGSPQVFDDVYKYDPKTNS 117 (376)
T ss_pred CCEEEEEeCCCCCeEEEEECCCCCCCeEECCcCCCCCcccceEEEECCEEEEEcCCCCCCCCCceeEcccEEEEeCCCCE
Confidence 56788732 235578888743 45655443221111022 22246789986432 23778884 44
Q ss_pred eEEEcCC-cCCc-ccEEEc-cCCcEEEEeC
Q 018474 124 VEAIVPD-ASFT-NDVIAA-SDGTLYFTVA 150 (355)
Q Consensus 124 ~~~~~~~-~~~~-~~l~~d-~dG~ly~~d~ 150 (355)
.+.+... .... ...++. -++.||+...
T Consensus 118 W~~~~~~~p~~~~~~~~~~~~~~~IYv~GG 147 (376)
T PRK14131 118 WQKLDTRSPVGLAGHVAVSLHNGKAYITGG 147 (376)
T ss_pred EEeCCCCCCCcccceEEEEeeCCEEEEECC
Confidence 4444421 1111 122222 5789998644
No 296
>KOG0647 consensus mRNA export protein (contains WD40 repeats) [RNA processing and modification]
Probab=83.46 E-value=34 Score=30.86 Aligned_cols=36 Identities=14% Similarity=0.076 Sum_probs=28.0
Q ss_pred CceEEEeeCCCeEEEEecCCEEEEEEcCCCeeEEee
Q 018474 54 PEDVSVVVSKGALYTATRDGWVKYFILHNETLVNWK 89 (355)
Q Consensus 54 p~~i~~d~~~g~l~~~~~~g~i~~~~~~~g~~~~~~ 89 (355)
+-++++..++..+|++..++.+..+|..+++...+.
T Consensus 75 vL~v~WsddgskVf~g~~Dk~~k~wDL~S~Q~~~v~ 110 (347)
T KOG0647|consen 75 VLDVCWSDDGSKVFSGGCDKQAKLWDLASGQVSQVA 110 (347)
T ss_pred eEEEEEccCCceEEeeccCCceEEEEccCCCeeeee
Confidence 456777756677889999999999999888766553
No 297
>KOG0276 consensus Vesicle coat complex COPI, beta' subunit [Intracellular trafficking, secretion, and vesicular transport]
Probab=83.15 E-value=52 Score=32.78 Aligned_cols=26 Identities=31% Similarity=0.479 Sum_probs=20.4
Q ss_pred cccccEEEeCCCCEEEEEeCCCCeEE
Q 018474 190 YFANGIALSKNEDFVVVCESWKFRCR 215 (355)
Q Consensus 190 ~~pngi~~~~dg~~l~v~~~~~~~i~ 215 (355)
..|.-++-+|+|+++.++..+...|+
T Consensus 352 iyPq~L~hsPNGrfV~VcgdGEyiIy 377 (794)
T KOG0276|consen 352 IYPQTLAHSPNGRFVVVCGDGEYIIY 377 (794)
T ss_pred cchHHhccCCCCcEEEEecCccEEEE
Confidence 46888999999999999876655443
No 298
>PF06739 SBBP: Beta-propeller repeat; InterPro: IPR010620 This family is related to IPR001680 from INTERPRO and is likely to also form a beta-propeller. SBBP stands for Seven Bladed Beta Propeller.
Probab=82.84 E-value=1.1 Score=26.81 Aligned_cols=20 Identities=25% Similarity=0.521 Sum_probs=16.0
Q ss_pred CCcccEEEccCCcEEEEeCC
Q 018474 132 SFTNDVIAASDGTLYFTVAS 151 (355)
Q Consensus 132 ~~~~~l~~d~dG~ly~~d~~ 151 (355)
..+++|++|++|++|++-.+
T Consensus 13 ~~~~~IavD~~GNiYv~G~T 32 (38)
T PF06739_consen 13 DYGNGIAVDSNGNIYVTGYT 32 (38)
T ss_pred eeEEEEEECCCCCEEEEEee
Confidence 45888999999999997543
No 299
>KOG1272 consensus WD40-repeat-containing subunit of the 18S rRNA processing complex [RNA processing and modification]
Probab=82.70 E-value=5 Score=38.01 Aligned_cols=80 Identities=16% Similarity=0.169 Sum_probs=43.3
Q ss_pred CCeEEEEeCCCCeEEEe-eccccccccEEEeCCCCEEEEEeCC-CCeEEEEEeCCCCCcceeEecccCCCCcCceEECCC
Q 018474 169 YGQLRKYDPKLKETTVL-HEGFYFANGIALSKNEDFVVVCESW-KFRCRRYWLKGDRAGILDAFIENLPGGPDNINLAPD 246 (355)
Q Consensus 169 ~g~l~~~dp~~~~~~~~-~~~~~~pngi~~~~dg~~l~v~~~~-~~~i~~~~~~~~~~~~~~~~~~~~~g~p~~i~~d~~ 246 (355)
.|.+..|.|+..+.-+- ......-++|+++++|+ |.+.++ ...+-.||+..-. +...+. .|-...++.++..
T Consensus 272 nGtVSlWSP~skePLvKiLcH~g~V~siAv~~~G~--YMaTtG~Dr~~kIWDlR~~~--ql~t~~--tp~~a~~ls~Sqk 345 (545)
T KOG1272|consen 272 NGTVSLWSPNSKEPLVKILCHRGPVSSIAVDRGGR--YMATTGLDRKVKIWDLRNFY--QLHTYR--TPHPASNLSLSQK 345 (545)
T ss_pred CceEEecCCCCcchHHHHHhcCCCcceEEECCCCc--EEeecccccceeEeeecccc--ccceee--cCCCccccccccc
Confidence 56788888876542111 11223347899999997 344444 4456677775422 222222 1222355677766
Q ss_pred CCEEEEee
Q 018474 247 GSFWIGLI 254 (355)
Q Consensus 247 G~lwv~~~ 254 (355)
|.+-++..
T Consensus 346 glLA~~~G 353 (545)
T KOG1272|consen 346 GLLALSYG 353 (545)
T ss_pred cceeeecC
Confidence 75555443
No 300
>PF01011 PQQ: PQQ enzyme repeat family.; InterPro: IPR002372 Pyrrolo-quinoline quinone (PQQ) is a redox coenzyme, which serves as a cofactor for a number of enzymes (quinoproteins) and particularly for some bacterial dehydrogenases [, ]. A number of bacterial quinoproteins belong to this family. Enzymes in this group have repeats of a beta propeller.; PDB: 1H4I_C 1H4J_E 1W6S_A 2YH3_A 3PRW_A 3P1L_A 3Q7M_A 3Q7O_A 3Q7N_A 1G72_A ....
Probab=82.65 E-value=2.4 Score=25.20 Aligned_cols=23 Identities=22% Similarity=0.459 Sum_probs=19.9
Q ss_pred CeEEEEecCCEEEEEEcCCCeeE
Q 018474 64 GALYTATRDGWVKYFILHNETLV 86 (355)
Q Consensus 64 g~l~~~~~~g~i~~~~~~~g~~~ 86 (355)
|.+|+++.+|.|+.+|.++|+..
T Consensus 1 ~~v~~~~~~g~l~AlD~~TG~~~ 23 (38)
T PF01011_consen 1 GRVYVGTPDGYLYALDAKTGKVL 23 (38)
T ss_dssp TEEEEETTTSEEEEEETTTTSEE
T ss_pred CEEEEeCCCCEEEEEECCCCCEE
Confidence 46899988999999999999754
No 301
>KOG0308 consensus Conserved WD40 repeat-containing protein [Function unknown]
Probab=82.60 E-value=23 Score=35.21 Aligned_cols=68 Identities=9% Similarity=0.177 Sum_probs=42.2
Q ss_pred CCCceEEEeeCCCeEEEE-ecCCEEEEEEcCCCe-eEEeeccCCCcccCeEECCCCCEEEEeCCCcEEEEcC
Q 018474 52 NHPEDVSVVVSKGALYTA-TRDGWVKYFILHNET-LVNWKHIDSQSLLGLTTTKDGGVILCDNEKGLLKVTE 121 (355)
Q Consensus 52 ~~p~~i~~d~~~g~l~~~-~~~g~i~~~~~~~g~-~~~~~~~~~~p~~gl~~d~~g~L~v~~~~~gl~~~~~ 121 (355)
..--+++.. +.+.++++ ...+-|..+|+.+++ ..++.-...+.. .+.++++|+-.+..+.+|.+++-.
T Consensus 172 ~siYSLA~N-~t~t~ivsGgtek~lr~wDprt~~kimkLrGHTdNVr-~ll~~dDGt~~ls~sSDgtIrlWd 241 (735)
T KOG0308|consen 172 DSIYSLAMN-QTGTIIVSGGTEKDLRLWDPRTCKKIMKLRGHTDNVR-VLLVNDDGTRLLSASSDGTIRLWD 241 (735)
T ss_pred cceeeeecC-CcceEEEecCcccceEEeccccccceeeeeccccceE-EEEEcCCCCeEeecCCCceEEeee
Confidence 334456665 55666664 446777888998764 333321223466 788888997666666677777753
No 302
>KOG0303 consensus Actin-binding protein Coronin, contains WD40 repeats [Cytoskeleton]
Probab=82.32 E-value=44 Score=31.33 Aligned_cols=52 Identities=4% Similarity=0.022 Sum_probs=35.4
Q ss_pred CCeEEEEeCCCCeEEEeeccccccccEEEeCCCCEEEEEeCCCCeEEEEEeCC
Q 018474 169 YGQLRKYDPKLKETTVLHEGFYFANGIALSKNEDFVVVCESWKFRCRRYWLKG 221 (355)
Q Consensus 169 ~g~l~~~dp~~~~~~~~~~~~~~pngi~~~~dg~~l~v~~~~~~~i~~~~~~~ 221 (355)
...+..||-.||+...-....-.-..+.++.||. ++++......|..+++..
T Consensus 153 Dn~v~iWnv~tgeali~l~hpd~i~S~sfn~dGs-~l~TtckDKkvRv~dpr~ 204 (472)
T KOG0303|consen 153 DNTVSIWNVGTGEALITLDHPDMVYSMSFNRDGS-LLCTTCKDKKVRVIDPRR 204 (472)
T ss_pred CceEEEEeccCCceeeecCCCCeEEEEEeccCCc-eeeeecccceeEEEcCCC
Confidence 4568888888887543332222234578899998 677777778899998753
No 303
>PF02897 Peptidase_S9_N: Prolyl oligopeptidase, N-terminal beta-propeller domain; InterPro: IPR004106 In the MEROPS database peptidases and peptidase homologues are grouped into clans and families. Clans are groups of families for which there is evidence of common ancestry based on a common structural fold: Each clan is identified with two letters, the first representing the catalytic type of the families included in the clan (with the letter 'P' being used for a clan containing families of more than one of the catalytic types serine, threonine and cysteine). Some families cannot yet be assigned to clans, and when a formal assignment is required, such a family is described as belonging to clan A-, C-, M-, N-, S-, T- or U-, according to the catalytic type. Some clans are divided into subclans because there is evidence of a very ancient divergence within the clan, for example MA(E), the gluzincins, and MA(M), the metzincins. Peptidase families are grouped by their catalytic type, the first character representing the catalytic type: A, aspartic; C, cysteine; G, glutamic acid; M, metallo; N, asparagine; S, serine; T, threonine; and U, unknown. The serine, threonine and cysteine peptidases utilise the amino acid as a nucleophile and form an acyl intermediate - these peptidases can also readily act as transferases. In the case of aspartic, glutamic and metallopeptidases, the nucleophile is an activated water molecule. In the case of the asparagine endopeptidases, the nucleophile is asparagine and all are self-processing endopeptidases. In many instances the structural protein fold that characterises the clan or family may have lost its catalytic activity, yet retain its function in protein recognition and binding. Proteolytic enzymes that exploit serine in their catalytic activity are ubiquitous, being found in viruses, bacteria and eukaryotes []. They include a wide range of peptidase activity, including exopeptidase, endopeptidase, oligopeptidase and omega-peptidase activity. Over 20 families (denoted S1 - S66) of serine protease have been identified, these being grouped into clans on the basis of structural similarity and other functional evidence []. Structures are known for members of the clans and the structures indicate that some appear to be totally unrelated, suggesting different evolutionary origins for the serine peptidases []. Not withstanding their different evolutionary origins, there are similarities in the reaction mechanisms of several peptidases. Chymotrypsin, subtilisin and carboxypeptidase C have a catalytic triad of serine, aspartate and histidine in common: serine acts as a nucleophile, aspartate as an electrophile, and histidine as a base []. The geometric orientations of the catalytic residues are similar between families, despite different protein folds []. The linear arrangements of the catalytic residues commonly reflect clan relationships. For example the catalytic triad in the chymotrypsin clan (PA) is ordered HDS, but is ordered DHS in the subtilisin clan (SB) and SDH in the carboxypeptidase clan (SC) [, ]. This entry represents the beta-propeller domain found at the N-terminal of prolyl oligopeptidase, including acylamino-acid-releasing enzyme (also known as acylaminoacyl peptidase), which belong to the MEROPS peptidase family S9 (clan SC), subfamily S9A. The prolyl oligopeptidase family consist of a number of evolutionary related peptidases whose catalytic activity seems to be provided by a charge relay system similar to that of the trypsin family of serine proteases, but which evolved by independent convergent evolution. The N-terminal domain of prolyl oligopeptidases form an unusual 7-bladed beta-propeller consisting of seven 4-stranded beta-sheet motifs. Prolyl oligopeptidase is a large cytosolic enzyme involved in the maturation and degradation of peptide hormones and neuropeptides, which relate to the induction of amnesia. The enzyme contains a peptidase domain, where its catalytic triad (Ser554, His680, Asp641) is covered by the central tunnel of the N-terminal beta-propeller domain. In this way, large structured peptides are excluded from the active site, thereby protecting larger peptides and proteins from proteolysis in the cytosol []. The protein fold of the peptidase domain for members of this family resembles that of serine carboxypeptidase D, the type example of clan SC. Mammalian acylaminoacyl peptidase is an exopeptidase that is a member of the same prolyl oligopeptidase family of serine peptidases. This enzyme removes acylated amino acid residues from the N terminus of oligopeptides [].; GO: 0004252 serine-type endopeptidase activity, 0006508 proteolysis; PDB: 2BKL_B 3DDU_A 1YR2_A 2XE4_A 1VZ3_A 3EQ9_A 1O6F_A 3EQ7_A 4AN0_A 1UOP_A ....
Probab=82.22 E-value=46 Score=31.53 Aligned_cols=149 Identities=12% Similarity=0.081 Sum_probs=66.9
Q ss_pred CeEECCCCCEEE-E-eCCCc----EEEEc-CCC--eEEEcCCcCCcccEEEccCCc-EEEEeCCCCCCCccccccccccC
Q 018474 98 GLTTTKDGGVIL-C-DNEKG----LLKVT-EEG--VEAIVPDASFTNDVIAASDGT-LYFTVASTKYTPTDFYKDMAEGK 167 (355)
Q Consensus 98 gl~~d~~g~L~v-~-~~~~g----l~~~~-~~g--~~~~~~~~~~~~~l~~d~dG~-ly~~d~~~~~~~~~~~~~~~~~~ 167 (355)
++.+.++|+.++ + +.++. ++.++ .+| +.-.... .....+...+||+ +|.+......... ...
T Consensus 128 ~~~~Spdg~~la~~~s~~G~e~~~l~v~Dl~tg~~l~d~i~~-~~~~~~~W~~d~~~~~y~~~~~~~~~~-------~~~ 199 (414)
T PF02897_consen 128 GFSVSPDGKRLAYSLSDGGSEWYTLRVFDLETGKFLPDGIEN-PKFSSVSWSDDGKGFFYTRFDEDQRTS-------DSG 199 (414)
T ss_dssp EEEETTTSSEEEEEEEETTSSEEEEEEEETTTTEEEEEEEEE-EESEEEEECTTSSEEEEEECSTTTSS--------CCG
T ss_pred eeeECCCCCEEEEEecCCCCceEEEEEEECCCCcCcCCcccc-cccceEEEeCCCCEEEEEEeCcccccc-------cCC
Confidence 356678887443 3 22222 55556 466 2211111 1122388888874 4555432100000 001
Q ss_pred CCCeEEEEeCCCCeE--EEeeccccc---cccEEEeCCCCEEEEEeCC--C-CeEEEEEeCCC--CCcceeEecccCCCC
Q 018474 168 PYGQLRKYDPKLKET--TVLHEGFYF---ANGIALSKNEDFVVVCESW--K-FRCRRYWLKGD--RAGILDAFIENLPGG 237 (355)
Q Consensus 168 ~~g~l~~~dp~~~~~--~~~~~~~~~---pngi~~~~dg~~l~v~~~~--~-~~i~~~~~~~~--~~~~~~~~~~~~~g~ 237 (355)
....++++...+... ..+...... -.++..++|++++++.... . +.++.++.+.. .....+.+.....+.
T Consensus 200 ~~~~v~~~~~gt~~~~d~lvfe~~~~~~~~~~~~~s~d~~~l~i~~~~~~~~s~v~~~d~~~~~~~~~~~~~l~~~~~~~ 279 (414)
T PF02897_consen 200 YPRQVYRHKLGTPQSEDELVFEEPDEPFWFVSVSRSKDGRYLFISSSSGTSESEVYLLDLDDGGSPDAKPKLLSPREDGV 279 (414)
T ss_dssp CCEEEEEEETTS-GGG-EEEEC-TTCTTSEEEEEE-TTSSEEEEEEESSSSEEEEEEEECCCTTTSS-SEEEEEESSSS-
T ss_pred CCcEEEEEECCCChHhCeeEEeecCCCcEEEEEEecCcccEEEEEEEccccCCeEEEEeccccCCCcCCcEEEeCCCCce
Confidence 123577776554432 233333222 3367889999988875543 2 45777776543 122344443222221
Q ss_pred cCceEECCCCCEEEEeec
Q 018474 238 PDNINLAPDGSFWIGLIK 255 (355)
Q Consensus 238 p~~i~~d~~G~lwv~~~~ 255 (355)
-. .+....+.+|+-++.
T Consensus 280 ~~-~v~~~~~~~yi~Tn~ 296 (414)
T PF02897_consen 280 EY-YVDHHGDRLYILTND 296 (414)
T ss_dssp EE-EEEEETTEEEEEE-T
T ss_pred EE-EEEccCCEEEEeeCC
Confidence 11 111224468887765
No 304
>smart00135 LY Low-density lipoprotein-receptor YWTD domain. Type "B" repeats in low-density lipoprotein (LDL) receptor that plays a central role in mammalian cholesterol metabolism. Also present in a variety of molecules similar to gp300/megalin.
Probab=81.84 E-value=6.4 Score=23.39 Aligned_cols=31 Identities=23% Similarity=0.265 Sum_probs=24.2
Q ss_pred CCCCCceEEEeeCCCeEEEEe-cCCEEEEEEc
Q 018474 50 CVNHPEDVSVVVSKGALYTAT-RDGWVKYFIL 80 (355)
Q Consensus 50 ~~~~p~~i~~d~~~g~l~~~~-~~g~i~~~~~ 80 (355)
.+..|.++++|+.++.+|.+. ..+.|.+.+.
T Consensus 7 ~~~~~~~la~d~~~~~lYw~D~~~~~I~~~~~ 38 (43)
T smart00135 7 GLGHPNGLAVDWIEGRLYWTDWGLDVIEVANL 38 (43)
T ss_pred CCCCcCEEEEeecCCEEEEEeCCCCEEEEEeC
Confidence 478999999998888887654 4577777766
No 305
>KOG1009 consensus Chromatin assembly complex 1 subunit B/CAC2 (contains WD40 repeats) [Chromatin structure and dynamics; Replication, recombination and repair]
Probab=81.82 E-value=22 Score=33.21 Aligned_cols=91 Identities=11% Similarity=0.132 Sum_probs=55.4
Q ss_pred CcccCeEECCCCCEEEEeCCCcEEEEc-CC--------------C----e-EEEcCCcCCcccEEEccCCcEEEEeCCCC
Q 018474 94 QSLLGLTTTKDGGVILCDNEKGLLKVT-EE--------------G----V-EAIVPDASFTNDVIAASDGTLYFTVASTK 153 (355)
Q Consensus 94 ~p~~gl~~d~~g~L~v~~~~~gl~~~~-~~--------------g----~-~~~~~~~~~~~~l~~d~dG~ly~~d~~~~ 153 (355)
..+ ++.++++|+|......+|.+.+. +. . + +.+......+.+++..+|+++.++.+.
T Consensus 67 aVN-~vRf~p~gelLASg~D~g~v~lWk~~~~~~~~~d~e~~~~ke~w~v~k~lr~h~~diydL~Ws~d~~~l~s~s~-- 143 (434)
T KOG1009|consen 67 AVN-VVRFSPDGELLASGGDGGEVFLWKQGDVRIFDADTEADLNKEKWVVKKVLRGHRDDIYDLAWSPDSNFLVSGSV-- 143 (434)
T ss_pred eeE-EEEEcCCcCeeeecCCCceEEEEEecCcCCccccchhhhCccceEEEEEecccccchhhhhccCCCceeeeeec--
Confidence 366 88999999988766555533332 11 0 0 011111156777888888766665433
Q ss_pred CCCccccccccccCCCCeEEEEeCCCCeEEEeec-cccccccEEEeCCCC
Q 018474 154 YTPTDFYKDMAEGKPYGQLRKYDPKLKETTVLHE-GFYFANGIALSKNED 202 (355)
Q Consensus 154 ~~~~~~~~~~~~~~~~g~l~~~dp~~~~~~~~~~-~~~~pngi~~~~dg~ 202 (355)
...++.||...|++..... .-..++|++++|-++
T Consensus 144 ---------------dns~~l~Dv~~G~l~~~~~dh~~yvqgvawDpl~q 178 (434)
T KOG1009|consen 144 ---------------DNSVRLWDVHAGQLLAILDDHEHYVQGVAWDPLNQ 178 (434)
T ss_pred ---------------cceEEEEEeccceeEeeccccccccceeecchhhh
Confidence 3467778877777655443 345688888888664
No 306
>PF00930 DPPIV_N: Dipeptidyl peptidase IV (DPP IV) N-terminal region; InterPro: IPR002469 In the MEROPS database peptidases and peptidase homologues are grouped into clans and families. Clans are groups of families for which there is evidence of common ancestry based on a common structural fold: Each clan is identified with two letters, the first representing the catalytic type of the families included in the clan (with the letter 'P' being used for a clan containing families of more than one of the catalytic types serine, threonine and cysteine). Some families cannot yet be assigned to clans, and when a formal assignment is required, such a family is described as belonging to clan A-, C-, M-, N-, S-, T- or U-, according to the catalytic type. Some clans are divided into subclans because there is evidence of a very ancient divergence within the clan, for example MA(E), the gluzincins, and MA(M), the metzincins. Peptidase families are grouped by their catalytic type, the first character representing the catalytic type: A, aspartic; C, cysteine; G, glutamic acid; M, metallo; N, asparagine; S, serine; T, threonine; and U, unknown. The serine, threonine and cysteine peptidases utilise the amino acid as a nucleophile and form an acyl intermediate - these peptidases can also readily act as transferases. In the case of aspartic, glutamic and metallopeptidases, the nucleophile is an activated water molecule. In the case of the asparagine endopeptidases, the nucleophile is asparagine and all are self-processing endopeptidases. In many instances the structural protein fold that characterises the clan or family may have lost its catalytic activity, yet retain its function in protein recognition and binding. Proteolytic enzymes that exploit serine in their catalytic activity are ubiquitous, being found in viruses, bacteria and eukaryotes []. They include a wide range of peptidase activity, including exopeptidase, endopeptidase, oligopeptidase and omega-peptidase activity. Over 20 families (denoted S1 - S66) of serine protease have been identified, these being grouped into clans on the basis of structural similarity and other functional evidence []. Structures are known for members of the clans and the structures indicate that some appear to be totally unrelated, suggesting different evolutionary origins for the serine peptidases []. Not withstanding their different evolutionary origins, there are similarities in the reaction mechanisms of several peptidases. Chymotrypsin, subtilisin and carboxypeptidase C have a catalytic triad of serine, aspartate and histidine in common: serine acts as a nucleophile, aspartate as an electrophile, and histidine as a base []. The geometric orientations of the catalytic residues are similar between families, despite different protein folds []. The linear arrangements of the catalytic residues commonly reflect clan relationships. For example the catalytic triad in the chymotrypsin clan (PA) is ordered HDS, but is ordered DHS in the subtilisin clan (SB) and SDH in the carboxypeptidase clan (SC) [, ]. This domain defines serine peptidases belonging to MEROPS peptidase family S9 (clan SC), subfamily S9B (dipeptidyl-peptidase IV). The protein fold of the peptidase domain for members of this family resembles that of serine carboxypeptidase D, the type example of clan SC. This domain is an alignment of the region to the N-terminal side of the active site, which is found in IPR001375 from INTERPRO. CD26 (3.4.14.5 from EC) is also called adenosine deaminase-binding protein (ADA-binding protein) or dipeptidylpeptidase IV (DPP IV ectoenzyme). The exopeptidase cleaves off N-terminal X-Pro or X-Ala dipeptides from polypeptides (dipeptidyl peptidase IV activity). CD26 serves as the costimulatory molecule in T cell activation and is an associated marker of autoimmune diseases, adenosine deaminase-deficiency and HIV pathogenesis. Dipeptidyl peptidase IV (DPP IV) is responsible for the removal of N-terminal dipeptides sequentially from polypeptides having unsubstituted N termini, provided that the penultimate residue is proline. The enzyme catalyses the reaction: Dipeptidyl-Polypeptide + H(2)O = Dipeptide + Polypeptide It is a type II membrane protein that forms a homodimer. CD molecules are leucocyte antigens on cell surfaces. CD antigens nomenclature is updated at Protein Reviews On The Web (http://prow.nci.nih.gov/). ; GO: 0006508 proteolysis, 0016020 membrane; PDB: 2RIP_A 3Q8W_B 2AJL_I 1TKR_B 1TK3_B 3C45_A 2G5P_A 3G0C_D 1R9M_C 1RWQ_A ....
Probab=81.61 E-value=45 Score=30.98 Aligned_cols=57 Identities=21% Similarity=0.232 Sum_probs=34.0
Q ss_pred ceEEEEEeCCCCeEEEEEECCCCCcccceeEEEEeCCEEEEeecC----CCeEEEeeCC-CCCC
Q 018474 292 GARVVKVDGNDGKIIRDFNDPDATYISFVTSAAEFDGNLYLASLQ----SNFIGILPLD-GPEP 350 (355)
Q Consensus 292 ~~~v~~~~~~~g~~~~~~~~~~g~~~~~~~~~~~~~g~L~v~~~~----~~~i~~~~~~-~~~~ 350 (355)
...|+.++. +|.....++..+-.+ ..+..+-+.++.||+.... ...|.+++++ +..+
T Consensus 259 ~~hly~~~~-~~~~~~~lT~G~~~V-~~i~~~d~~~~~iyf~a~~~~p~~r~lY~v~~~~~~~~ 320 (353)
T PF00930_consen 259 YRHLYLYDL-DGGKPRQLTSGDWEV-TSILGWDEDNNRIYFTANGDNPGERHLYRVSLDSGGEP 320 (353)
T ss_dssp SEEEEEEET-TSSEEEESS-SSS-E-EEEEEEECTSSEEEEEESSGGTTSBEEEEEETTETTEE
T ss_pred CcEEEEEcc-cccceeccccCceee-cccceEcCCCCEEEEEecCCCCCceEEEEEEeCCCCCe
Confidence 467999999 777766665533221 1122222345889987665 4478888887 4443
No 307
>TIGR03548 mutarot_permut cyclically-permuted mutatrotase family protein. Members of this protein family show essentially full-length homology, cyclically permuted, to YjhT from Escherichia coli. YjhT was shown to act as a mutarotase for sialic acid, and by this ability to be able to act as a virulence factor. Members of the YjhT family (TIGR03547) and this cyclically-permuted family have multiple repeats of the beta-propeller-forming Kelch repeat.
Probab=81.39 E-value=43 Score=30.59 Aligned_cols=110 Identities=14% Similarity=0.072 Sum_probs=58.1
Q ss_pred CCeEEE-Eec-----CCEEEEEEcCCCeeE-EeeccCCCc-----ccCeEECCCCCEEEEeCC------CcEEEEcC-CC
Q 018474 63 KGALYT-ATR-----DGWVKYFILHNETLV-NWKHIDSQS-----LLGLTTTKDGGVILCDNE------KGLLKVTE-EG 123 (355)
Q Consensus 63 ~g~l~~-~~~-----~g~i~~~~~~~g~~~-~~~~~~~~p-----~~gl~~d~~g~L~v~~~~------~gl~~~~~-~g 123 (355)
++.||+ +.. ...++++|+.+.++. .+......| . +.+. -+++|||.... ..++++|. +.
T Consensus 72 ~~~lyviGG~~~~~~~~~v~~~d~~~~~w~~~~~~~~~lp~~~~~~-~~~~-~~~~iYv~GG~~~~~~~~~v~~yd~~~~ 149 (323)
T TIGR03548 72 ENGIYYIGGSNSSERFSSVYRITLDESKEELICETIGNLPFTFENG-SACY-KDGTLYVGGGNRNGKPSNKSYLFNLETQ 149 (323)
T ss_pred CCEEEEEcCCCCCCCceeEEEEEEcCCceeeeeeEcCCCCcCccCc-eEEE-ECCEEEEEeCcCCCccCceEEEEcCCCC
Confidence 456665 322 136788888777652 222211111 1 2222 36789986432 24788884 44
Q ss_pred -eEEEcCCc--CCcccEEEccCCcEEEEeCCCCCCCccccccccccCCCCeEEEEeCCCCeEEEeec
Q 018474 124 -VEAIVPDA--SFTNDVIAASDGTLYFTVASTKYTPTDFYKDMAEGKPYGQLRKYDPKLKETTVLHE 187 (355)
Q Consensus 124 -~~~~~~~~--~~~~~l~~d~dG~ly~~d~~~~~~~~~~~~~~~~~~~~g~l~~~dp~~~~~~~~~~ 187 (355)
-+.+..-. ......++.-++.||+-..... .....+++|||++.+++.+..
T Consensus 150 ~W~~~~~~p~~~r~~~~~~~~~~~iYv~GG~~~-------------~~~~~~~~yd~~~~~W~~~~~ 203 (323)
T TIGR03548 150 EWFELPDFPGEPRVQPVCVKLQNELYVFGGGSN-------------IAYTDGYKYSPKKNQWQKVAD 203 (323)
T ss_pred CeeECCCCCCCCCCcceEEEECCEEEEEcCCCC-------------ccccceEEEecCCCeeEECCC
Confidence 44443211 1223334445788998643210 001246899999999987653
No 308
>PF05935 Arylsulfotrans: Arylsulfotransferase (ASST); InterPro: IPR010262 This family consists of several bacterial arylsulphotransferase proteins. Arylsulphotransferase (ASST) transfers a sulphate group from phenolic sulphate esters to a phenolic acceptor substrate [].; PDB: 3ETT_B 3ELQ_A 3ETS_A.
Probab=81.29 E-value=56 Score=31.90 Aligned_cols=141 Identities=14% Similarity=0.173 Sum_probs=67.9
Q ss_pred CCEEEEEEcCCCeeEEeeccCC-CcccCeEECCCCCEEEEeCCCcEEEEcCCC--eEEEc--CCc-CCcccEEEccCCcE
Q 018474 72 DGWVKYFILHNETLVNWKHIDS-QSLLGLTTTKDGGVILCDNEKGLLKVTEEG--VEAIV--PDA-SFTNDVIAASDGTL 145 (355)
Q Consensus 72 ~g~i~~~~~~~g~~~~~~~~~~-~p~~gl~~d~~g~L~v~~~~~gl~~~~~~g--~~~~~--~~~-~~~~~l~~d~dG~l 145 (355)
.+..+.+|. +|.++.+..... ... .+..-++|+|++... ..+..+|..| +.... ... .+=+++...++|++
T Consensus 127 ~~~~~~iD~-~G~Vrw~~~~~~~~~~-~~~~l~nG~ll~~~~-~~~~e~D~~G~v~~~~~l~~~~~~~HHD~~~l~nGn~ 203 (477)
T PF05935_consen 127 SSYTYLIDN-NGDVRWYLPLDSGSDN-SFKQLPNGNLLIGSG-NRLYEIDLLGKVIWEYDLPGGYYDFHHDIDELPNGNL 203 (477)
T ss_dssp EEEEEEEET-TS-EEEEE-GGGT--S-SEEE-TTS-EEEEEB-TEEEEE-TT--EEEEEE--TTEE-B-S-EEE-TTS-E
T ss_pred CceEEEECC-CccEEEEEccCccccc-eeeEcCCCCEEEecC-CceEEEcCCCCEEEeeecCCcccccccccEECCCCCE
Confidence 456777887 777654433222 122 255668999998875 5788888767 33322 211 34577899999976
Q ss_pred EEEeCCCCCCCccccccccccCCCCeEEEEeCCCCeEEEee---cc-------------------------ccccccEEE
Q 018474 146 YFTVASTKYTPTDFYKDMAEGKPYGQLRKYDPKLKETTVLH---EG-------------------------FYFANGIAL 197 (355)
Q Consensus 146 y~~d~~~~~~~~~~~~~~~~~~~~g~l~~~dp~~~~~~~~~---~~-------------------------~~~pngi~~ 197 (355)
.+............. .......+..+| .+|++.... +- -...|.+..
T Consensus 204 L~l~~~~~~~~~~~~----~~~~~D~Ivevd-~tG~vv~~wd~~d~ld~~~~~~~~~~~~~~~~~~~~~~DW~H~Nsi~y 278 (477)
T PF05935_consen 204 LILASETKYVDEDKD----VDTVEDVIVEVD-PTGEVVWEWDFFDHLDPYRDTVLKPYPYGDISGSGGGRDWLHINSIDY 278 (477)
T ss_dssp EEEEEETTEE-TS-E----E---S-EEEEE--TTS-EEEEEEGGGTS-TT--TTGGT--SSSSS-SSTTSBS--EEEEEE
T ss_pred EEEEeecccccCCCC----ccEecCEEEEEC-CCCCEEEEEehHHhCCcccccccccccccccccCCCCCCccccCccEE
Confidence 654331000000000 001123466666 345543321 00 023478888
Q ss_pred eCCCCEEEEEeCCCCeEEEEEeC
Q 018474 198 SKNEDFVVVCESWKFRCRRYWLK 220 (355)
Q Consensus 198 ~~dg~~l~v~~~~~~~i~~~~~~ 220 (355)
++..+.++++....+.|+.++.+
T Consensus 279 d~~dd~iivSsR~~s~V~~Id~~ 301 (477)
T PF05935_consen 279 DPSDDSIIVSSRHQSAVIKIDYR 301 (477)
T ss_dssp ETTTTEEEEEETTT-EEEEEE-T
T ss_pred eCCCCeEEEEcCcceEEEEEECC
Confidence 88666799998877899999953
No 309
>KOG2111 consensus Uncharacterized conserved protein, contains WD40 repeats [Function unknown]
Probab=81.26 E-value=42 Score=30.45 Aligned_cols=72 Identities=26% Similarity=0.211 Sum_probs=50.8
Q ss_pred CCcccEEEccCCcEEEEeCCCCCCCccccccccccCCCCeEEE-EeCCCCe-EEEeeccccc--cccEEEeCCCCEEEEE
Q 018474 132 SFTNDVIAASDGTLYFTVASTKYTPTDFYKDMAEGKPYGQLRK-YDPKLKE-TTVLHEGFYF--ANGIALSKNEDFVVVC 207 (355)
Q Consensus 132 ~~~~~l~~d~dG~ly~~d~~~~~~~~~~~~~~~~~~~~g~l~~-~dp~~~~-~~~~~~~~~~--pngi~~~~dg~~l~v~ 207 (355)
..+..++...+|++..|-+. .|.+.| ||..+|+ +..+..+... -..|+++||..+|-+
T Consensus 182 s~Iacv~Ln~~Gt~vATaSt-----------------kGTLIRIFdt~~g~~l~E~RRG~d~A~iy~iaFSp~~s~Lav- 243 (346)
T KOG2111|consen 182 SDIACVALNLQGTLVATAST-----------------KGTLIRIFDTEDGTLLQELRRGVDRADIYCIAFSPNSSWLAV- 243 (346)
T ss_pred CceeEEEEcCCccEEEEecc-----------------CcEEEEEEEcCCCcEeeeeecCCchheEEEEEeCCCccEEEE-
Confidence 56777888889998877554 566665 6877664 4455555433 356899999985555
Q ss_pred eCCCCeEEEEEeCC
Q 018474 208 ESWKFRCRRYWLKG 221 (355)
Q Consensus 208 ~~~~~~i~~~~~~~ 221 (355)
.+.++.|+.|.+.+
T Consensus 244 sSdKgTlHiF~l~~ 257 (346)
T KOG2111|consen 244 SSDKGTLHIFSLRD 257 (346)
T ss_pred EcCCCeEEEEEeec
Confidence 45788999999865
No 310
>COG3823 Glutamine cyclotransferase [Posttranslational modification, protein turnover, chaperones]
Probab=81.24 E-value=34 Score=29.32 Aligned_cols=100 Identities=13% Similarity=0.078 Sum_probs=52.0
Q ss_pred CCcccEEEccCCcEEEEeCCCCCCCccccccccccCCCCeEEEEeCCCCeEEEee---ccccccccEEEeCCCCEEEEEe
Q 018474 132 SFTNDVIAASDGTLYFTVASTKYTPTDFYKDMAEGKPYGQLRKYDPKLKETTVLH---EGFYFANGIALSKNEDFVVVCE 208 (355)
Q Consensus 132 ~~~~~l~~d~dG~ly~~d~~~~~~~~~~~~~~~~~~~~g~l~~~dp~~~~~~~~~---~~~~~pngi~~~~dg~~l~v~~ 208 (355)
.+..++..+. |.++.+.... ....+.++|..+++...-. ..-.+..|++-. |+.+|.-.
T Consensus 46 sfTQGL~~~~-g~i~esTG~y---------------g~S~ir~~~L~~gq~~~s~~l~~~~~FgEGit~~--gd~~y~LT 107 (262)
T COG3823 46 SFTQGLEYLD-GHILESTGLY---------------GFSKIRVSDLTTGQEIFSEKLAPDTVFGEGITKL--GDYFYQLT 107 (262)
T ss_pred hhhcceeeeC-CEEEEecccc---------------ccceeEEEeccCceEEEEeecCCccccccceeec--cceEEEEE
Confidence 4566666553 3677665431 1236888888777654321 123345566654 44577766
Q ss_pred CCCCeEEEEEeCCCC-CcceeEecccCCCCcCceEECCCCCEEEEeec
Q 018474 209 SWKFRCRRYWLKGDR-AGILDAFIENLPGGPDNINLAPDGSFWIGLIK 255 (355)
Q Consensus 209 ~~~~~i~~~~~~~~~-~~~~~~~~~~~~g~p~~i~~d~~G~lwv~~~~ 255 (355)
...+--+.||.+.-+ ++.+ ..+|-.=|++.|.+ ++|.++..
T Consensus 108 w~egvaf~~d~~t~~~lg~~-----~y~GeGWgLt~d~~-~LimsdGs 149 (262)
T COG3823 108 WKEGVAFKYDADTLEELGRF-----SYEGEGWGLTSDDK-NLIMSDGS 149 (262)
T ss_pred eccceeEEEChHHhhhhccc-----ccCCcceeeecCCc-ceEeeCCc
Confidence 555555566653311 1221 12232234665543 58888754
No 311
>KOG0307 consensus Vesicle coat complex COPII, subunit SEC31 [Intracellular trafficking, secretion, and vesicular transport]
Probab=81.21 E-value=14 Score=38.97 Aligned_cols=132 Identities=14% Similarity=0.136 Sum_probs=65.9
Q ss_pred CeEEEEecCCEEEEEEcCC---C-eeE---EeeccCCCcccCeEECCCCC-EEEEeCCC-cEEEEcCCC-eEEEcC-CcC
Q 018474 64 GALYTATRDGWVKYFILHN---E-TLV---NWKHIDSQSLLGLTTTKDGG-VILCDNEK-GLLKVTEEG-VEAIVP-DAS 132 (355)
Q Consensus 64 g~l~~~~~~g~i~~~~~~~---g-~~~---~~~~~~~~p~~gl~~d~~g~-L~v~~~~~-gl~~~~~~g-~~~~~~-~~~ 132 (355)
|.+--|.+||.|..|++.. + +.. +.....+... |+.+.+.+. +.....+. .|+..|-.. -+.+.. ...
T Consensus 81 GlIaGG~edG~I~ly~p~~~~~~~~~~~la~~~~h~G~V~-gLDfN~~q~nlLASGa~~geI~iWDlnn~~tP~~~~~~~ 159 (1049)
T KOG0307|consen 81 GLIAGGLEDGNIVLYDPASIIANASEEVLATKSKHTGPVL-GLDFNPFQGNLLASGADDGEILIWDLNKPETPFTPGSQA 159 (1049)
T ss_pred ceeeccccCCceEEecchhhccCcchHHHhhhcccCCcee-eeeccccCCceeeccCCCCcEEEeccCCcCCCCCCCCCC
Confidence 3455567899999999843 2 211 1122335677 888887765 44433333 477777322 111111 112
Q ss_pred CcccE---EEccCCcEEEEeCCCCCCCccccccc-cccCCCCeEEEEeCCCCe-EEEeeccc--cccccEEEeCCCCEEE
Q 018474 133 FTNDV---IAASDGTLYFTVASTKYTPTDFYKDM-AEGKPYGQLRKYDPKLKE-TTVLHEGF--YFANGIALSKNEDFVV 205 (355)
Q Consensus 133 ~~~~l---~~d~dG~ly~~d~~~~~~~~~~~~~~-~~~~~~g~l~~~dp~~~~-~~~~~~~~--~~pngi~~~~dg~~l~ 205 (355)
.+.++ .... ...++ -.+..+|+...||.+.++ +..+.... ..-++++++||+..-+
T Consensus 160 ~~~eI~~lsWNr-----------------kvqhILAS~s~sg~~~iWDlr~~~pii~ls~~~~~~~~S~l~WhP~~aTql 222 (1049)
T KOG0307|consen 160 PPSEIKCLSWNR-----------------KVSHILASGSPSGRAVIWDLRKKKPIIKLSDTPGRMHCSVLAWHPDHATQL 222 (1049)
T ss_pred CcccceEeccch-----------------hhhHHhhccCCCCCceeccccCCCcccccccCCCccceeeeeeCCCCceee
Confidence 22222 2111 11111 123446678888876442 11222111 1234789999998666
Q ss_pred EEeCCCCe
Q 018474 206 VCESWKFR 213 (355)
Q Consensus 206 v~~~~~~~ 213 (355)
+..+...+
T Consensus 223 ~~As~dd~ 230 (1049)
T KOG0307|consen 223 LVASGDDS 230 (1049)
T ss_pred eeecCCCC
Confidence 65555554
No 312
>PF11768 DUF3312: Protein of unknown function (DUF3312); InterPro: IPR024511 This is a eukaryotic family of uncharacterised proteins that contain WD40 repeats.
Probab=80.72 E-value=11 Score=36.73 Aligned_cols=72 Identities=13% Similarity=0.087 Sum_probs=53.2
Q ss_pred EecCCCCCCCceEEEeeCCCeEEEEecCCEEEEEEcCCCeeEEeeccCCCcccCeEECCCCCEEEEeCCCc-EEEEc
Q 018474 45 KLGEGCVNHPEDVSVVVSKGALYTATRDGWVKYFILHNETLVNWKHIDSQSLLGLTTTKDGGVILCDNEKG-LLKVT 120 (355)
Q Consensus 45 ~~~~~~~~~p~~i~~d~~~g~l~~~~~~g~i~~~~~~~g~~~~~~~~~~~p~~gl~~d~~g~L~v~~~~~g-l~~~~ 120 (355)
.++.. ..+.+.+..+.+..+.+|+.||.|..+|...+. ..+....-.|. -+++.++|.+++....+| +-.+|
T Consensus 255 sipL~--s~v~~ca~sp~E~kLvlGC~DgSiiLyD~~~~~-t~~~ka~~~P~-~iaWHp~gai~~V~s~qGelQ~FD 327 (545)
T PF11768_consen 255 SIPLP--SQVICCARSPSEDKLVLGCEDGSIILYDTTRGV-TLLAKAEFIPT-LIAWHPDGAIFVVGSEQGELQCFD 327 (545)
T ss_pred EEecC--CcceEEecCcccceEEEEecCCeEEEEEcCCCe-eeeeeecccce-EEEEcCCCcEEEEEcCCceEEEEE
Confidence 45543 578888899888999999999999999985553 33344445687 899999998776655544 66666
No 313
>KOG1445 consensus Tumor-specific antigen (contains WD repeats) [Cytoskeleton]
Probab=78.74 E-value=75 Score=31.82 Aligned_cols=91 Identities=11% Similarity=0.060 Sum_probs=56.6
Q ss_pred ccCCCCC-CCcCccCceEecCCCCCCCceEEEeeC-CCeEEEEecCCEEEEEEcCCCeeE-EeeccCCCcccCeEECCCC
Q 018474 29 SLLSISK-ESSSMKGLTKLGEGCVNHPEDVSVVVS-KGALYTATRDGWVKYFILHNETLV-NWKHIDSQSLLGLTTTKDG 105 (355)
Q Consensus 29 ~~~~~~~-~~~~l~~~~~~~~~~~~~p~~i~~d~~-~g~l~~~~~~g~i~~~~~~~g~~~-~~~~~~~~p~~gl~~d~~g 105 (355)
..|++|. ...+|+.-+.+.-++-..-|++.+++- +|.+|. ...|.++.+|..+++.. .......-.. ++.+.+||
T Consensus 105 KiW~lp~g~~q~LSape~~~g~~~~~vE~l~fHpTaDgil~s-~a~g~v~i~D~stqk~~~el~~h~d~vQ-Sa~WseDG 182 (1012)
T KOG1445|consen 105 KIWKLPRGHSQKLSAPEIDVGGGNVIVECLRFHPTADGILAS-GAHGSVYITDISTQKTAVELSGHTDKVQ-SADWSEDG 182 (1012)
T ss_pred EEEecCCCcccccCCcceeecCCceEEEEeecccCcCceEEe-ccCceEEEEEcccCceeecccCCchhhh-ccccccCC
Confidence 4688884 555775555444333455788888864 454554 45677999998777543 2222223456 77788899
Q ss_pred CEEEEeCC-CcEEEEcC
Q 018474 106 GVILCDNE-KGLLKVTE 121 (355)
Q Consensus 106 ~L~v~~~~-~gl~~~~~ 121 (355)
.|..+... +.+..+|+
T Consensus 183 ~llatscKdkqirifDP 199 (1012)
T KOG1445|consen 183 KLLATSCKDKQIRIFDP 199 (1012)
T ss_pred ceEeeecCCcceEEeCC
Confidence 98766544 45667774
No 314
>KOG0641 consensus WD40 repeat protein [General function prediction only]
Probab=78.56 E-value=43 Score=28.89 Aligned_cols=27 Identities=11% Similarity=-0.065 Sum_probs=18.8
Q ss_pred cccEEEeCCCCEEEEEeCCCCeEEEEEe
Q 018474 192 ANGIALSKNEDFVVVCESWKFRCRRYWL 219 (355)
Q Consensus 192 pngi~~~~dg~~l~v~~~~~~~i~~~~~ 219 (355)
....+++|+|. |+.+.+....|-.+..
T Consensus 92 iyc~~ws~~ge-liatgsndk~ik~l~f 118 (350)
T KOG0641|consen 92 IYCTAWSPCGE-LIATGSNDKTIKVLPF 118 (350)
T ss_pred EEEEEecCccC-eEEecCCCceEEEEec
Confidence 34678999998 7777776666655443
No 315
>KOG0305 consensus Anaphase promoting complex, Cdc20, Cdh1, and Ama1 subunits [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones]
Probab=78.19 E-value=70 Score=31.18 Aligned_cols=180 Identities=12% Similarity=0.050 Sum_probs=96.5
Q ss_pred CCCceEEEeeCCCeEEEEecCCEEEEEEcCCCeeEEeecc--CCCcccCeEECCCCCEEEEeCC-CcEEEEc-CCC---e
Q 018474 52 NHPEDVSVVVSKGALYTATRDGWVKYFILHNETLVNWKHI--DSQSLLGLTTTKDGGVILCDNE-KGLLKVT-EEG---V 124 (355)
Q Consensus 52 ~~p~~i~~d~~~g~l~~~~~~g~i~~~~~~~g~~~~~~~~--~~~p~~gl~~d~~g~L~v~~~~-~gl~~~~-~~g---~ 124 (355)
....++.+.+++..|-+++.+|.+..+|.++.+-.+.... ..+.- .+++ ++.++..... +-|..++ ... +
T Consensus 218 ~~vtSv~ws~~G~~LavG~~~g~v~iwD~~~~k~~~~~~~~h~~rvg-~laW--~~~~lssGsr~~~I~~~dvR~~~~~~ 294 (484)
T KOG0305|consen 218 ELVTSVKWSPDGSHLAVGTSDGTVQIWDVKEQKKTRTLRGSHASRVG-SLAW--NSSVLSSGSRDGKILNHDVRISQHVV 294 (484)
T ss_pred CceEEEEECCCCCEEEEeecCCeEEEEehhhccccccccCCcCceeE-EEec--cCceEEEecCCCcEEEEEEecchhhh
Confidence 6788999997888888999999999999865543332222 22333 4444 3444444333 3366665 322 3
Q ss_pred EEEcCCcCCcccEEEccCCcEEEEeCCCCCCCccccccccccCCCCeEEEEeCCCCeEE-EeeccccccccEEEeCCCCE
Q 018474 125 EAIVPDASFTNDVIAASDGTLYFTVASTKYTPTDFYKDMAEGKPYGQLRKYDPKLKETT-VLHEGFYFANGIALSKNEDF 203 (355)
Q Consensus 125 ~~~~~~~~~~~~l~~d~dG~ly~~d~~~~~~~~~~~~~~~~~~~~g~l~~~dp~~~~~~-~~~~~~~~pngi~~~~dg~~ 203 (355)
+.+......+.++...+||+...+... .+.++.||....+.. .+.+....--.++++|-.+.
T Consensus 295 ~~~~~H~qeVCgLkws~d~~~lASGgn-----------------DN~~~Iwd~~~~~p~~~~~~H~aAVKA~awcP~q~~ 357 (484)
T KOG0305|consen 295 STLQGHRQEVCGLKWSPDGNQLASGGN-----------------DNVVFIWDGLSPEPKFTFTEHTAAVKALAWCPWQSG 357 (484)
T ss_pred hhhhcccceeeeeEECCCCCeeccCCC-----------------ccceEeccCCCccccEEEeccceeeeEeeeCCCccC
Confidence 322222267888889988876654322 345666664222211 11112222345678887766
Q ss_pred EEEEeCC-CCeEEEEE-eCCCCCcceeEecccCCCCcCceEECCCCCEEEEeec
Q 018474 204 VVVCESW-KFRCRRYW-LKGDRAGILDAFIENLPGGPDNINLAPDGSFWIGLIK 255 (355)
Q Consensus 204 l~v~~~~-~~~i~~~~-~~~~~~~~~~~~~~~~~g~p~~i~~d~~G~lwv~~~~ 255 (355)
|+.+.-+ ..+..+|+ ... +....-+ ....+.-+++..+..+=.+++.+
T Consensus 358 lLAsGGGs~D~~i~fwn~~~---g~~i~~v-dtgsQVcsL~Wsk~~kEi~sthG 407 (484)
T KOG0305|consen 358 LLATGGGSADRCIKFWNTNT---GARIDSV-DTGSQVCSLIWSKKYKELLSTHG 407 (484)
T ss_pred ceEEcCCCcccEEEEEEcCC---CcEeccc-ccCCceeeEEEcCCCCEEEEecC
Confidence 6666543 33444444 321 1111111 11234566777776655555554
No 316
>KOG0305 consensus Anaphase promoting complex, Cdc20, Cdh1, and Ama1 subunits [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones]
Probab=77.13 E-value=76 Score=30.97 Aligned_cols=136 Identities=10% Similarity=0.026 Sum_probs=73.0
Q ss_pred CCCeEEEEecCCEEEEEEcCCCeeEEeecc-CCCcccCeEECCCCCE-EEEeCCCcEEEEcC-CC--eEEEcC-CcCCcc
Q 018474 62 SKGALYTATRDGWVKYFILHNETLVNWKHI-DSQSLLGLTTTKDGGV-ILCDNEKGLLKVTE-EG--VEAIVP-DASFTN 135 (355)
Q Consensus 62 ~~g~l~~~~~~g~i~~~~~~~g~~~~~~~~-~~~p~~gl~~d~~g~L-~v~~~~~gl~~~~~-~g--~~~~~~-~~~~~~ 135 (355)
..+.+-++.. ..+|.++..+++....-.. .+.+. .+.+..+|+. -|+...+-+..+|. +. .+.+.. ....+-
T Consensus 187 s~n~laValg-~~vylW~~~s~~v~~l~~~~~~~vt-Sv~ws~~G~~LavG~~~g~v~iwD~~~~k~~~~~~~~h~~rvg 264 (484)
T KOG0305|consen 187 SANVLAVALG-QSVYLWSASSGSVTELCSFGEELVT-SVKWSPDGSHLAVGTSDGTVQIWDVKEQKKTRTLRGSHASRVG 264 (484)
T ss_pred cCCeEEEEec-ceEEEEecCCCceEEeEecCCCceE-EEEECCCCCEEEEeecCCeEEEEehhhccccccccCCcCceeE
Confidence 3455556553 4589999988887666544 45577 8999988874 55554444555562 22 333222 112222
Q ss_pred cEEEccCCcEEEEeCCCCCCCccccccccccCCCCeEEEEeCCCCeEE--EeeccccccccEEEeCCCCEEEEEeCCCCe
Q 018474 136 DVIAASDGTLYFTVASTKYTPTDFYKDMAEGKPYGQLRKYDPKLKETT--VLHEGFYFANGIALSKNEDFVVVCESWKFR 213 (355)
Q Consensus 136 ~l~~d~dG~ly~~d~~~~~~~~~~~~~~~~~~~~g~l~~~dp~~~~~~--~~~~~~~~pngi~~~~dg~~l~v~~~~~~~ 213 (355)
.++ -++.++.+. ...+.+..+|....+-. .+...-..-.|+.+++|++. +.+.-.++.
T Consensus 265 ~la--W~~~~lssG-----------------sr~~~I~~~dvR~~~~~~~~~~~H~qeVCgLkws~d~~~-lASGgnDN~ 324 (484)
T KOG0305|consen 265 SLA--WNSSVLSSG-----------------SRDGKILNHDVRISQHVVSTLQGHRQEVCGLKWSPDGNQ-LASGGNDNV 324 (484)
T ss_pred EEe--ccCceEEEe-----------------cCCCcEEEEEEecchhhhhhhhcccceeeeeEECCCCCe-eccCCCccc
Confidence 232 223333332 22455666654333211 11111233568999999973 344444667
Q ss_pred EEEEEe
Q 018474 214 CRRYWL 219 (355)
Q Consensus 214 i~~~~~ 219 (355)
+..++.
T Consensus 325 ~~Iwd~ 330 (484)
T KOG0305|consen 325 VFIWDG 330 (484)
T ss_pred eEeccC
Confidence 777775
No 317
>KOG0276 consensus Vesicle coat complex COPI, beta' subunit [Intracellular trafficking, secretion, and vesicular transport]
Probab=75.06 E-value=95 Score=31.08 Aligned_cols=97 Identities=9% Similarity=0.143 Sum_probs=52.8
Q ss_pred ceEEEeeCCCeEEEEecCCEEEEEEcCCCeeEEeeccCCCccc-CeEECCCCCEEEEeCCCcEEEEc-CCC--eEEEcCC
Q 018474 55 EDVSVVVSKGALYTATRDGWVKYFILHNETLVNWKHIDSQSLL-GLTTTKDGGVILCDNEKGLLKVT-EEG--VEAIVPD 130 (355)
Q Consensus 55 ~~i~~d~~~g~l~~~~~~g~i~~~~~~~g~~~~~~~~~~~p~~-gl~~d~~g~L~v~~~~~gl~~~~-~~g--~~~~~~~ 130 (355)
-++.++|-.-.+.++..+|.+..+|-++....+-.....-|.. +-.+.+.+=+.++.....+-.++ .++ ++.+-..
T Consensus 17 KsVd~HPtePw~la~LynG~V~IWnyetqtmVksfeV~~~PvRa~kfiaRknWiv~GsDD~~IrVfnynt~ekV~~FeAH 96 (794)
T KOG0276|consen 17 KSVDFHPTEPWILAALYNGDVQIWNYETQTMVKSFEVSEVPVRAAKFIARKNWIVTGSDDMQIRVFNYNTGEKVKTFEAH 96 (794)
T ss_pred eeeecCCCCceEEEeeecCeeEEEecccceeeeeeeecccchhhheeeeccceEEEecCCceEEEEecccceeeEEeecc
Confidence 3555665555556677899988888766544332222333321 22233333333333223333444 244 6666555
Q ss_pred cCCcccEEEccCCcEEEEeCC
Q 018474 131 ASFTNDVIAASDGTLYFTVAS 151 (355)
Q Consensus 131 ~~~~~~l~~d~dG~ly~~d~~ 151 (355)
...++.+++.|.-=..++.+.
T Consensus 97 ~DyIR~iavHPt~P~vLtsSD 117 (794)
T KOG0276|consen 97 SDYIRSIAVHPTLPYVLTSSD 117 (794)
T ss_pred ccceeeeeecCCCCeEEecCC
Confidence 578899999987655565543
No 318
>COG4247 Phy 3-phytase (myo-inositol-hexaphosphate 3-phosphohydrolase) [Lipid metabolism]
Probab=74.33 E-value=62 Score=28.64 Aligned_cols=23 Identities=13% Similarity=0.381 Sum_probs=18.5
Q ss_pred CeEEC-CCCCEEEEeCCCcEEEEc
Q 018474 98 GLTTT-KDGGVILCDNEKGLLKVT 120 (355)
Q Consensus 98 gl~~d-~~g~L~v~~~~~gl~~~~ 120 (355)
|+..| +-|.||++.-.-+|+++.
T Consensus 209 G~VaDdEtG~LYIaeEdvaiWK~~ 232 (364)
T COG4247 209 GMVADDETGFLYIAEEDVAIWKYE 232 (364)
T ss_pred ceeeccccceEEEeeccceeeecc
Confidence 67665 678999998777899987
No 319
>PF11725 AvrE: Pathogenicity factor; InterPro: IPR021085 This family is secreted by Gram-negative Gammaproteobacteria such as Pseudomonas syringae of tomato and Erwinia amylovora (Fire blight bacteria), amongst others. It is an essential pathogenicity factor of approximately 198 kDa. Its injection into the host-plant is dependent upon the bacterial type III or Hrp secretion system []. The family is long and carries a number of predicted functional regions, including an ERMS or endoplasmic reticulum membrane retention signal at both the C- and the N-termini, a leucine-zipper motif from residues 539-560, and a nuclear localisation signal at 1358-1361. This conserved AvrE-family of effectors is among the few that are required for full virulence of many phytopathogenic pseudomonads, erwinias and pantoeas [].
Probab=74.33 E-value=27 Score=38.82 Aligned_cols=127 Identities=20% Similarity=0.180 Sum_probs=63.9
Q ss_pred cCCEEEEEEcCCCeeEEeeccCCCcccCeEECCCCCEEEEeCCCcEEEEcCCC-eEEEcCCcCCcccEEEccCCcE-EEE
Q 018474 71 RDGWVKYFILHNETLVNWKHIDSQSLLGLTTTKDGGVILCDNEKGLLKVTEEG-VEAIVPDASFTNDVIAASDGTL-YFT 148 (355)
Q Consensus 71 ~~g~i~~~~~~~g~~~~~~~~~~~p~~gl~~d~~g~L~v~~~~~gl~~~~~~g-~~~~~~~~~~~~~l~~d~dG~l-y~~ 148 (355)
.+++||++|+...+|+........+++.|....||.||. -.+..+..+...+ -+... ..+.++.+.++|++ .++
T Consensus 380 Hd~~LY~~d~~~~~Wk~~~~~~d~~~S~Ls~qgdG~lYA-k~~~~l~nLSs~~~~~~~v---~~l~sfSv~~~g~vA~L~ 455 (1774)
T PF11725_consen 380 HDDRLYQFDPNTARWKPPPDKSDTPFSSLSRQGDGKLYA-KDDDTLVNLSSGQMSEAEV---DKLKSFSVAPDGTVAMLT 455 (1774)
T ss_pred ecCceeeeccccceecCCCCcccchhhhhcccCCCceEe-cCCCceeecCCCCcchhhh---hhcccccccCCCceeeee
Confidence 466788888877777643233334443677778888987 4344455554333 22111 12334455566654 232
Q ss_pred eCCCCCCCccccccccccCCCCeEEEEeCCCCeE------E-EeeccccccccEEEeCCCCEEEEEeCCCCeEEEEEe
Q 018474 149 VASTKYTPTDFYKDMAEGKPYGQLRKYDPKLKET------T-VLHEGFYFANGIALSKNEDFVVVCESWKFRCRRYWL 219 (355)
Q Consensus 149 d~~~~~~~~~~~~~~~~~~~~g~l~~~dp~~~~~------~-~~~~~~~~pngi~~~~dg~~l~v~~~~~~~i~~~~~ 219 (355)
..... .-.+...++..+.. . .+..+......|.+++| .||++++ .++++.-++
T Consensus 456 ~~d~q---------------~~qL~~m~~~~a~~~p~~~~~L~L~dG~a~A~~VgLs~d--rLFvADs-eGkLYsa~l 515 (1774)
T PF11725_consen 456 GKDGQ---------------TLQLHDMSPVDAPPTPRKTKTLQLADGKAQAQSVGLSND--RLFVADS-EGKLYSADL 515 (1774)
T ss_pred cCCCc---------------ceeeeccCccccccCccceeeeeccCCchhhhheeecCC--eEEEEeC-CCCEEeccc
Confidence 21100 00222222221111 0 11122234556778777 4999986 467877665
No 320
>KOG1963 consensus WD40 repeat protein [General function prediction only]
Probab=73.64 E-value=1.2e+02 Score=31.42 Aligned_cols=91 Identities=21% Similarity=0.318 Sum_probs=54.4
Q ss_pred ceEEEeeCCCeEEEEecCCEEEEEEcCC--C-----eeEEeeccCCCcccCeEECCCCC-EEEEeCCCcEEEEc--CCC-
Q 018474 55 EDVSVVVSKGALYTATRDGWVKYFILHN--E-----TLVNWKHIDSQSLLGLTTTKDGG-VILCDNEKGLLKVT--EEG- 123 (355)
Q Consensus 55 ~~i~~d~~~g~l~~~~~~g~i~~~~~~~--g-----~~~~~~~~~~~p~~gl~~d~~g~-L~v~~~~~gl~~~~--~~g- 123 (355)
.+.+..|.++.+-.+..+|+|..+..-. + +..+|. ..... ++++..+|. ||-+. ..+++... .++
T Consensus 209 t~~~~spn~~~~Aa~d~dGrI~vw~d~~~~~~~~t~t~lHWH--~~~V~-~L~fS~~G~~LlSGG-~E~VLv~Wq~~T~~ 284 (792)
T KOG1963|consen 209 TCVALSPNERYLAAGDSDGRILVWRDFGSSDDSETCTLLHWH--HDEVN-SLSFSSDGAYLLSGG-REGVLVLWQLETGK 284 (792)
T ss_pred eeEEeccccceEEEeccCCcEEEEeccccccccccceEEEec--ccccc-eeEEecCCceEeecc-cceEEEEEeecCCC
Confidence 4566776666666677788887764311 1 223332 23456 888888886 44443 33555444 244
Q ss_pred eEEEcCCcCCcccEEEccCCcEEEEe
Q 018474 124 VEAIVPDASFTNDVIAASDGTLYFTV 149 (355)
Q Consensus 124 ~~~~~~~~~~~~~l~~d~dG~ly~~d 149 (355)
.+.++.-..-+-++++++|+.+|...
T Consensus 285 kqfLPRLgs~I~~i~vS~ds~~~sl~ 310 (792)
T KOG1963|consen 285 KQFLPRLGSPILHIVVSPDSDLYSLV 310 (792)
T ss_pred cccccccCCeeEEEEEcCCCCeEEEE
Confidence 44444333667889999999888543
No 321
>KOG0771 consensus Prolactin regulatory element-binding protein/Protein transport protein SEC12p [Intracellular trafficking, secretion, and vesicular transport]
Probab=73.38 E-value=82 Score=29.59 Aligned_cols=49 Identities=14% Similarity=0.179 Sum_probs=25.1
Q ss_pred CCeEEEEe-CCCCeEEEeeccccccccEEEeCCCCEEEEEeCCCCeEEEEEe
Q 018474 169 YGQLRKYD-PKLKETTVLHEGFYFANGIALSKNEDFVVVCESWKFRCRRYWL 219 (355)
Q Consensus 169 ~g~l~~~d-p~~~~~~~~~~~~~~pngi~~~~dg~~l~v~~~~~~~i~~~~~ 219 (355)
.|.+-.++ |+-.........-..-+.+.|+|||+.|.-.... ...+++.
T Consensus 165 dg~lRv~~~Ps~~t~l~e~~~~~eV~DL~FS~dgk~lasig~d--~~~VW~~ 214 (398)
T KOG0771|consen 165 DGTLRVWEWPSMLTILEEIAHHAEVKDLDFSPDGKFLASIGAD--SARVWSV 214 (398)
T ss_pred cceEEEEecCcchhhhhhHhhcCccccceeCCCCcEEEEecCC--ceEEEEe
Confidence 44555566 5422221111222335678999999855544433 4444554
No 322
>KOG0650 consensus WD40 repeat nucleolar protein Bop1, involved in ribosome biogenesis [Translation, ribosomal structure and biogenesis]
Probab=72.29 E-value=37 Score=33.59 Aligned_cols=98 Identities=8% Similarity=0.052 Sum_probs=59.6
Q ss_pred CCCCCceEEEeeCCCeEEEEec---CCEEEEEEcCCCee-EEeeccCCCcccCeEECCC-CCEEEEeCCCcEEEEcC-CC
Q 018474 50 CVNHPEDVSVVVSKGALYTATR---DGWVKYFILHNETL-VNWKHIDSQSLLGLTTTKD-GGVILCDNEKGLLKVTE-EG 123 (355)
Q Consensus 50 ~~~~p~~i~~d~~~g~l~~~~~---~g~i~~~~~~~g~~-~~~~~~~~~p~~gl~~d~~-g~L~v~~~~~gl~~~~~-~g 123 (355)
....-..+.++++|+.|-+... +..|+.......+. ..|....+.+. ...|.+. -.|+|++. ..+..|+- ..
T Consensus 520 ~~k~i~~vtWHrkGDYlatV~~~~~~~~VliHQLSK~~sQ~PF~kskG~vq-~v~FHPs~p~lfVaTq-~~vRiYdL~kq 597 (733)
T KOG0650|consen 520 HPKSIRQVTWHRKGDYLATVMPDSGNKSVLIHQLSKRKSQSPFRKSKGLVQ-RVKFHPSKPYLFVATQ-RSVRIYDLSKQ 597 (733)
T ss_pred cCCccceeeeecCCceEEEeccCCCcceEEEEecccccccCchhhcCCcee-EEEecCCCceEEEEec-cceEEEehhHH
Confidence 3466778899976776665443 23454444422222 23334456676 7777754 46889884 45666662 23
Q ss_pred --eEEEcCCcCCcccEEEccCC-cEEEEe
Q 018474 124 --VEAIVPDASFTNDVIAASDG-TLYFTV 149 (355)
Q Consensus 124 --~~~~~~~~~~~~~l~~d~dG-~ly~~d 149 (355)
++.+.....++..+++++.| +|.+++
T Consensus 598 elvKkL~tg~kwiS~msihp~GDnli~gs 626 (733)
T KOG0650|consen 598 ELVKKLLTGSKWISSMSIHPNGDNLILGS 626 (733)
T ss_pred HHHHHHhcCCeeeeeeeecCCCCeEEEec
Confidence 44444444788999999988 787764
No 323
>KOG2395 consensus Protein involved in vacuole import and degradation [Intracellular trafficking, secretion, and vesicular transport]
Probab=71.93 E-value=66 Score=31.52 Aligned_cols=126 Identities=12% Similarity=0.151 Sum_probs=70.8
Q ss_pred CCEEEEEEcCCCeeE-EeeccCC--------CcccCeEECCCCCEEEEeCCCcEEEEcC--CC-eEE-EcC-Cc----CC
Q 018474 72 DGWVKYFILHNETLV-NWKHIDS--------QSLLGLTTTKDGGVILCDNEKGLLKVTE--EG-VEA-IVP-DA----SF 133 (355)
Q Consensus 72 ~g~i~~~~~~~g~~~-~~~~~~~--------~p~~gl~~d~~g~L~v~~~~~gl~~~~~--~g-~~~-~~~-~~----~~ 133 (355)
..+|+.+|.+.|++. .|..... .-. +-.+++.+. +|+-...+++++|+ .| -+. +.. .. +.
T Consensus 355 ~~~l~klDIE~GKIVeEWk~~~di~mv~~t~d~K-~~Ql~~e~T-lvGLs~n~vfriDpRv~~~~kl~~~q~kqy~~k~n 432 (644)
T KOG2395|consen 355 QDKLYKLDIERGKIVEEWKFEDDINMVDITPDFK-FAQLTSEQT-LVGLSDNSVFRIDPRVQGKNKLAVVQSKQYSTKNN 432 (644)
T ss_pred cCcceeeecccceeeeEeeccCCcceeeccCCcc-hhccccccc-EEeecCCceEEecccccCcceeeeeeccccccccc
Confidence 456899999888753 4432111 111 222333444 45666779999994 44 111 111 11 45
Q ss_pred cccEEEccCCcEEEEeCCCCCCCccccccccccCCCCeEEEEeCCCCeEEEeecccccc-ccEEEeCCCCEEEEEeCCCC
Q 018474 134 TNDVIAASDGTLYFTVASTKYTPTDFYKDMAEGKPYGQLRKYDPKLKETTVLHEGFYFA-NGIALSKNEDFVVVCESWKF 212 (355)
Q Consensus 134 ~~~l~~d~dG~ly~~d~~~~~~~~~~~~~~~~~~~~g~l~~~dp~~~~~~~~~~~~~~p-ngi~~~~dg~~l~v~~~~~~ 212 (355)
-++.+...+|.|-++.. .|.|-.||--....+...+++..| -+|..+.||++++.+ ...
T Consensus 433 Fsc~aTT~sG~IvvgS~------------------~GdIRLYdri~~~AKTAlPgLG~~I~hVdvtadGKwil~T--c~t 492 (644)
T KOG2395|consen 433 FSCFATTESGYIVVGSL------------------KGDIRLYDRIGRRAKTALPGLGDAIKHVDVTADGKWILAT--CKT 492 (644)
T ss_pred cceeeecCCceEEEeec------------------CCcEEeehhhhhhhhhcccccCCceeeEEeeccCcEEEEe--ccc
Confidence 56667777887777643 345666665333344445555433 578899999965544 345
Q ss_pred eEEEEEe
Q 018474 213 RCRRYWL 219 (355)
Q Consensus 213 ~i~~~~~ 219 (355)
-|..++.
T Consensus 493 yLlLi~t 499 (644)
T KOG2395|consen 493 YLLLIDT 499 (644)
T ss_pred EEEEEEE
Confidence 6666664
No 324
>PF14269 Arylsulfotran_2: Arylsulfotransferase (ASST)
Probab=70.90 E-value=83 Score=28.61 Aligned_cols=28 Identities=14% Similarity=0.364 Sum_probs=20.6
Q ss_pred cccCeEECCCCCEEEEeCC-CcEEEEc-CCC
Q 018474 95 SLLGLTTTKDGGVILCDNE-KGLLKVT-EEG 123 (355)
Q Consensus 95 p~~gl~~d~~g~L~v~~~~-~gl~~~~-~~g 123 (355)
++ ++..+++|++.|.... .-+++++ ++|
T Consensus 146 iN-sV~~~~~G~yLiS~R~~~~i~~I~~~tG 175 (299)
T PF14269_consen 146 IN-SVDKDDDGDYLISSRNTSTIYKIDPSTG 175 (299)
T ss_pred ee-eeeecCCccEEEEecccCEEEEEECCCC
Confidence 56 6777888998876544 4688998 577
No 325
>KOG1408 consensus WD40 repeat protein [Function unknown]
Probab=70.69 E-value=44 Score=33.87 Aligned_cols=69 Identities=16% Similarity=0.111 Sum_probs=44.4
Q ss_pred CceEEEeeCCCeEEEEecCCEEEEEEcCCCeeEEeecc----CCCcccCeEECCCCCEEEEeCC-CcEEEEc-CCC
Q 018474 54 PEDVSVVVSKGALYTATRDGWVKYFILHNETLVNWKHI----DSQSLLGLTTTKDGGVILCDNE-KGLLKVT-EEG 123 (355)
Q Consensus 54 p~~i~~d~~~g~l~~~~~~g~i~~~~~~~g~~~~~~~~----~~~p~~gl~~d~~g~L~v~~~~-~gl~~~~-~~g 123 (355)
--+|++||.-+.+.++..|..|..++...|+.++.-+. .+.+. -+..|+.|.-.++... +-|..+| -.|
T Consensus 599 lYDm~Vdp~~k~v~t~cQDrnirif~i~sgKq~k~FKgs~~~eG~lI-Kv~lDPSgiY~atScsdktl~~~Df~sg 673 (1080)
T KOG1408|consen 599 LYDMAVDPTSKLVVTVCQDRNIRIFDIESGKQVKSFKGSRDHEGDLI-KVILDPSGIYLATSCSDKTLCFVDFVSG 673 (1080)
T ss_pred EEEeeeCCCcceEEEEecccceEEEeccccceeeeecccccCCCceE-EEEECCCccEEEEeecCCceEEEEeccc
Confidence 44678887778888888999999999988876543221 23444 5667877644443333 3455555 344
No 326
>KOG2394 consensus WD40 protein DMR-N9 [General function prediction only]
Probab=70.57 E-value=12 Score=36.36 Aligned_cols=87 Identities=20% Similarity=0.237 Sum_probs=58.0
Q ss_pred CCceEEEeeCCCeEEEEecCCEEEEEEcCCCeeEEeecc-CCCcccCeEECCCCCEEEEeCCCcEEEEc--CCCeEEEcC
Q 018474 53 HPEDVSVVVSKGALYTATRDGWVKYFILHNETLVNWKHI-DSQSLLGLTTTKDGGVILCDNEKGLLKVT--EEGVEAIVP 129 (355)
Q Consensus 53 ~p~~i~~d~~~g~l~~~~~~g~i~~~~~~~g~~~~~~~~-~~~p~~gl~~d~~g~L~v~~~~~gl~~~~--~~g~~~~~~ 129 (355)
.+..+++.+++..|-+.+.||-+..+|-.+.++.-..+. -+.-. ++.+.+||+.+++...+.|+-+. .++ ++++.
T Consensus 292 ~in~f~FS~DG~~LA~VSqDGfLRvF~fdt~eLlg~mkSYFGGLL-CvcWSPDGKyIvtGGEDDLVtVwSf~er-RVVAR 369 (636)
T KOG2394|consen 292 SINEFAFSPDGKYLATVSQDGFLRIFDFDTQELLGVMKSYFGGLL-CVCWSPDGKYIVTGGEDDLVTVWSFEER-RVVAR 369 (636)
T ss_pred cccceeEcCCCceEEEEecCceEEEeeccHHHHHHHHHhhccceE-EEEEcCCccEEEecCCcceEEEEEeccc-eEEEe
Confidence 788889987677777888899888888755443322211 12234 78899999988876566676665 233 33332
Q ss_pred C---cCCcccEEEcc
Q 018474 130 D---ASFTNDVIAAS 141 (355)
Q Consensus 130 ~---~~~~~~l~~d~ 141 (355)
. -.+++.+++||
T Consensus 370 GqGHkSWVs~VaFDp 384 (636)
T KOG2394|consen 370 GQGHKSWVSVVAFDP 384 (636)
T ss_pred ccccccceeeEeecc
Confidence 2 27999999996
No 327
>PLN02153 epithiospecifier protein
Probab=70.31 E-value=90 Score=28.75 Aligned_cols=108 Identities=9% Similarity=0.050 Sum_probs=55.1
Q ss_pred CEEEEEEcCCCeeEEeeccCCCccc---CeEE-CCCCCEEEEeCC------CcEEEEcC-CC-eEEEcCC-----c-CCc
Q 018474 73 GWVKYFILHNETLVNWKHIDSQSLL---GLTT-TKDGGVILCDNE------KGLLKVTE-EG-VEAIVPD-----A-SFT 134 (355)
Q Consensus 73 g~i~~~~~~~g~~~~~~~~~~~p~~---gl~~-d~~g~L~v~~~~------~gl~~~~~-~g-~~~~~~~-----~-~~~ 134 (355)
..++++|+.+.++.........|.. +... --+++||+.... ..++++|. +. -+.+... + ...
T Consensus 50 ~~~~~yd~~~~~W~~~~~~~~~p~~~~~~~~~~~~~~~iyv~GG~~~~~~~~~v~~yd~~t~~W~~~~~~~~~~~p~~R~ 129 (341)
T PLN02153 50 KDLYVFDFNTHTWSIAPANGDVPRISCLGVRMVAVGTKLYIFGGRDEKREFSDFYSYDTVKNEWTFLTKLDEEGGPEART 129 (341)
T ss_pred CcEEEEECCCCEEEEcCccCCCCCCccCceEEEEECCEEEEECCCCCCCccCcEEEEECCCCEEEEeccCCCCCCCCCce
Confidence 3588999988888765433221210 2221 135778886421 24778884 44 4443321 1 111
Q ss_pred ccEEEccCCcEEEEeCCCCCCCccccccccccCCCCeEEEEeCCCCeEEEee
Q 018474 135 NDVIAASDGTLYFTVASTKYTPTDFYKDMAEGKPYGQLRKYDPKLKETTVLH 186 (355)
Q Consensus 135 ~~l~~d~dG~ly~~d~~~~~~~~~~~~~~~~~~~~g~l~~~dp~~~~~~~~~ 186 (355)
...++.-++.||+........ ... .......+++||+++.+++.+.
T Consensus 130 ~~~~~~~~~~iyv~GG~~~~~---~~~---~~~~~~~v~~yd~~~~~W~~l~ 175 (341)
T PLN02153 130 FHSMASDENHVYVFGGVSKGG---LMK---TPERFRTIEAYNIADGKWVQLP 175 (341)
T ss_pred eeEEEEECCEEEEECCccCCC---ccC---CCcccceEEEEECCCCeEeeCC
Confidence 222333467888764321000 000 0001235889999999988764
No 328
>PF15416 DUF4623: Domain of unknown function (DUF4623)
Probab=68.83 E-value=63 Score=29.70 Aligned_cols=62 Identities=11% Similarity=0.036 Sum_probs=39.6
Q ss_pred EEeCCCCEEEEEeCCCCeEEEEEeCCCCCcceeEecc-----cCCCCcCceEECCCCCEEEEeecCC
Q 018474 196 ALSKNEDFVVVCESWKFRCRRYWLKGDRAGILDAFIE-----NLPGGPDNINLAPDGSFWIGLIKMN 257 (355)
Q Consensus 196 ~~~~dg~~l~v~~~~~~~i~~~~~~~~~~~~~~~~~~-----~~~g~p~~i~~d~~G~lwv~~~~~~ 257 (355)
+-+-||+++++........+...++.-+.+....+.- ....++.||..-..|++|+++..+.
T Consensus 138 ~a~fDGe~VLvvsR~~~~pHLLkvsdLK~g~inpI~LdlTgVtgGTf~yNmgAl~nGH~Y~asLSG~ 204 (442)
T PF15416_consen 138 CASFDGEHVLVVSRGTTKPHLLKVSDLKAGEINPIPLDLTGVTGGTFSYNMGALVNGHSYLASLSGG 204 (442)
T ss_pred ccCCCCcEEEEEecCCCCceeeehhHhhcCCccceeeecccccCcccccchhhhcCCeEEEEeccCC
Confidence 3456888888887766566666665444343332211 1224788887667899999998754
No 329
>KOG1188 consensus WD40 repeat protein [General function prediction only]
Probab=66.43 E-value=1.1e+02 Score=28.23 Aligned_cols=145 Identities=17% Similarity=0.156 Sum_probs=78.0
Q ss_pred CCCeEEEEeCCCCeE-EEeeccccccccEEEeCC-CCEEEEEeCCCCeEEEEEeCCCCCcceeEecccCCCCcCceEECC
Q 018474 168 PYGQLRKYDPKLKET-TVLHEGFYFANGIALSKN-EDFVVVCESWKFRCRRYWLKGDRAGILDAFIENLPGGPDNINLAP 245 (355)
Q Consensus 168 ~~g~l~~~dp~~~~~-~~~~~~~~~pngi~~~~d-g~~l~v~~~~~~~i~~~~~~~~~~~~~~~~~~~~~g~p~~i~~d~ 245 (355)
.+|.+-.||+.+++. +.+......-|++.|..+ +-+.+.+.+..+.|..||++.........+ ...++.|. +.+|.
T Consensus 48 Sngsv~lyd~~tg~~l~~fk~~~~~~N~vrf~~~ds~h~v~s~ssDG~Vr~wD~Rs~~e~a~~~~-~~~~~~~f-~~ld~ 125 (376)
T KOG1188|consen 48 SNGSVRLYDKGTGQLLEEFKGPPATTNGVRFISCDSPHGVISCSSDGTVRLWDIRSQAESARISW-TQQSGTPF-ICLDL 125 (376)
T ss_pred cCCeEEEEeccchhhhheecCCCCcccceEEecCCCCCeeEEeccCCeEEEEEeecchhhhheec-cCCCCCcc-eEeec
Confidence 367788888877653 333322344578887763 333444455678899999854221111111 12333333 34444
Q ss_pred --CCCEEEEeecCCchhhHhhhcchhHHHHHHhccchhhcccCCCCCCceEEEEEeCC-CCeEEEEEECCCCCcccceeE
Q 018474 246 --DGSFWIGLIKMNQTGVRAIQKCREKWELLDAYPGLISLLLPMGSDAGARVVKVDGN-DGKIIRDFNDPDATYISFVTS 322 (355)
Q Consensus 246 --~G~lwv~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~-~g~~~~~~~~~~g~~~~~~~~ 322 (355)
++++....... ......|+.+|-- ..+.+..|.+. ....+|.
T Consensus 126 nck~~ii~~GtE~--------------------------------~~s~A~v~lwDvR~~qq~l~~~~eS---H~DDVT~ 170 (376)
T KOG1188|consen 126 NCKKNIIACGTEL--------------------------------TRSDASVVLWDVRSEQQLLRQLNES---HNDDVTQ 170 (376)
T ss_pred cCcCCeEEecccc--------------------------------ccCceEEEEEEeccccchhhhhhhh---ccCccee
Confidence 45555433220 0222456667641 22335555432 2446777
Q ss_pred EEEeC--CEEEEeecCCCeEEEeeCCCCC
Q 018474 323 AAEFD--GNLYLASLQSNFIGILPLDGPE 349 (355)
Q Consensus 323 ~~~~~--g~L~v~~~~~~~i~~~~~~~~~ 349 (355)
+.++. -+|.++....+.+-.|++....
T Consensus 171 lrFHP~~pnlLlSGSvDGLvnlfD~~~d~ 199 (376)
T KOG1188|consen 171 LRFHPSDPNLLLSGSVDGLVNLFDTKKDN 199 (376)
T ss_pred EEecCCCCCeEEeecccceEEeeecCCCc
Confidence 77763 5566666668888888877653
No 330
>TIGR03548 mutarot_permut cyclically-permuted mutatrotase family protein. Members of this protein family show essentially full-length homology, cyclically permuted, to YjhT from Escherichia coli. YjhT was shown to act as a mutarotase for sialic acid, and by this ability to be able to act as a virulence factor. Members of the YjhT family (TIGR03547) and this cyclically-permuted family have multiple repeats of the beta-propeller-forming Kelch repeat.
Probab=66.35 E-value=1e+02 Score=28.02 Aligned_cols=87 Identities=10% Similarity=0.095 Sum_probs=47.0
Q ss_pred CCeEEEEec------CCEEEEEEcCCCeeEEeeccC--CCcccCeEECCCCCEEEEeCCC-----cEEEEcC-CC-eEEE
Q 018474 63 KGALYTATR------DGWVKYFILHNETLVNWKHID--SQSLLGLTTTKDGGVILCDNEK-----GLLKVTE-EG-VEAI 127 (355)
Q Consensus 63 ~g~l~~~~~------~g~i~~~~~~~g~~~~~~~~~--~~p~~gl~~d~~g~L~v~~~~~-----gl~~~~~-~g-~~~~ 127 (355)
++.+|+... ...++++|+.+++|+...... .+.. ..+.--+++|||..... .++++|+ +. -+.+
T Consensus 123 ~~~iYv~GG~~~~~~~~~v~~yd~~~~~W~~~~~~p~~~r~~-~~~~~~~~~iYv~GG~~~~~~~~~~~yd~~~~~W~~~ 201 (323)
T TIGR03548 123 DGTLYVGGGNRNGKPSNKSYLFNLETQEWFELPDFPGEPRVQ-PVCVKLQNELYVFGGGSNIAYTDGYKYSPKKNQWQKV 201 (323)
T ss_pred CCEEEEEeCcCCCccCceEEEEcCCCCCeeECCCCCCCCCCc-ceEEEECCEEEEEcCCCCccccceEEEecCCCeeEEC
Confidence 667886321 246889999999988765322 2222 22223467899865322 2567884 44 4444
Q ss_pred cCCc--CCcc----cE-EEccCCcEEEEeC
Q 018474 128 VPDA--SFTN----DV-IAASDGTLYFTVA 150 (355)
Q Consensus 128 ~~~~--~~~~----~l-~~d~dG~ly~~d~ 150 (355)
.... ..|. .. ++-.++.||+...
T Consensus 202 ~~~~~~~~p~~~~~~~~~~~~~~~iyv~GG 231 (323)
T TIGR03548 202 ADPTTDSEPISLLGAASIKINESLLLCIGG 231 (323)
T ss_pred CCCCCCCCceeccceeEEEECCCEEEEECC
Confidence 3211 1121 11 2224678988643
No 331
>PF02191 OLF: Olfactomedin-like domain; InterPro: IPR003112 The olfactomedin-domain was first identified in olfactomedin, an extracellular matrix protein of the olfactory neuroepithelium []. Members of this extracellular domain-family have since been shown to be present in several metazoan proteins, such as latrophilins, myocilins, optimedins and noelins, the latter being involved in the generation of neural crest cells. Myocilin is of considerable interest, as mutations in its olfactomedin-domain can lead to glaucoma []. The olfactomedin-domains in myocilin and optimedin are essential for the interaction between these two proteins [].; GO: 0005515 protein binding
Probab=66.16 E-value=95 Score=27.44 Aligned_cols=146 Identities=12% Similarity=0.160 Sum_probs=75.5
Q ss_pred CCCCceEEEeeCCCeEEE-EecCCEEEEEEcCCCeeEEeeccC--C---------Cc---ccCeEECCCCCEEEE---eC
Q 018474 51 VNHPEDVSVVVSKGALYT-ATRDGWVKYFILHNETLVNWKHID--S---------QS---LLGLTTTKDGGVILC---DN 112 (355)
Q Consensus 51 ~~~p~~i~~d~~~g~l~~-~~~~g~i~~~~~~~g~~~~~~~~~--~---------~p---~~gl~~d~~g~L~v~---~~ 112 (355)
..|.-.++. +|.||. ......|.|+|..++......... + .+ . .++.|+. -|||- ..
T Consensus 69 ~~GtG~vVY---ngslYY~~~~s~~IvkydL~t~~v~~~~~L~~A~~~n~~~y~~~~~t~i-D~AvDE~-GLWvIYat~~ 143 (250)
T PF02191_consen 69 WQGTGHVVY---NGSLYYNKYNSRNIVKYDLTTRSVVARRELPGAGYNNRFPYYWSGYTDI-DFAVDEN-GLWVIYATED 143 (250)
T ss_pred eccCCeEEE---CCcEEEEecCCceEEEEECcCCcEEEEEECCccccccccceecCCCceE-EEEEcCC-CEEEEEecCC
Confidence 344444444 445554 344678999999888665221110 0 01 2 4677744 46663 33
Q ss_pred CCc---EEEEcCCC---eEEEcCCc---CCcccEEEccCCcEEEEeCCCCCCCccccccccccCCCCe-EEEEeCCCCeE
Q 018474 113 EKG---LLKVTEEG---VEAIVPDA---SFTNDVIAASDGTLYFTVASTKYTPTDFYKDMAEGKPYGQ-LRKYDPKLKET 182 (355)
Q Consensus 113 ~~g---l~~~~~~g---~~~~~~~~---~~~~~l~~d~dG~ly~~d~~~~~~~~~~~~~~~~~~~~g~-l~~~dp~~~~~ 182 (355)
..| +-++|++- .+...... ..-+.+. -=|.||++++... .... .+.||..+++.
T Consensus 144 ~~g~ivvskld~~tL~v~~tw~T~~~k~~~~naFm--vCGvLY~~~s~~~--------------~~~~I~yafDt~t~~~ 207 (250)
T PF02191_consen 144 NNGNIVVSKLDPETLSVEQTWNTSYPKRSAGNAFM--VCGVLYATDSYDT--------------RDTEIFYAFDTYTGKE 207 (250)
T ss_pred CCCcEEEEeeCcccCceEEEEEeccCchhhcceee--EeeEEEEEEECCC--------------CCcEEEEEEECCCCce
Confidence 344 33445422 23332222 2222222 2388999876521 1123 46789877765
Q ss_pred EEee----ccccccccEEEeCCCCEEEEEeCCCCeEEEEEe
Q 018474 183 TVLH----EGFYFANGIALSKNEDFVVVCESWKFRCRRYWL 219 (355)
Q Consensus 183 ~~~~----~~~~~pngi~~~~dg~~l~v~~~~~~~i~~~~~ 219 (355)
..+. ........+...|..+.||+=+. +.+..|++
T Consensus 208 ~~~~i~f~~~~~~~~~l~YNP~dk~LY~wd~--G~~v~Y~v 246 (250)
T PF02191_consen 208 EDVSIPFPNPYGNISMLSYNPRDKKLYAWDN--GYQVTYDV 246 (250)
T ss_pred eceeeeeccccCceEeeeECCCCCeEEEEEC--CeEEEEEE
Confidence 4322 11223345677788788888764 45666665
No 332
>KOG0918 consensus Selenium-binding protein [Inorganic ion transport and metabolism]
Probab=65.63 E-value=30 Score=32.50 Aligned_cols=44 Identities=18% Similarity=0.200 Sum_probs=27.3
Q ss_pred CCcccEEEccCC-cEEEEeCCCCCCCccccccccccCCCCeEEEEeC
Q 018474 132 SFTNDVIAASDG-TLYFTVASTKYTPTDFYKDMAEGKPYGQLRKYDP 177 (355)
Q Consensus 132 ~~~~~l~~d~dG-~ly~~d~~~~~~~~~~~~~~~~~~~~g~l~~~dp 177 (355)
..|.=+..+-|| +||+|++..+.+.+.++-++++. .+.+.++|-
T Consensus 389 GGPQMlQLSLDGKRLYVt~SLys~WD~QFYPE~v~~--G~~miqidv 433 (476)
T KOG0918|consen 389 GGPQMLQLSLDGKRLYVTNSLYSAWDRQFYPELVSK--GSHMIQIDV 433 (476)
T ss_pred CCceeEEeccCCcEEEEEchhhhhhHhhhCHHHHhc--CceEEEEee
Confidence 567778888899 89999987443444444444432 234555553
No 333
>KOG0321 consensus WD40 repeat-containing protein L2DTL [Function unknown]
Probab=65.40 E-value=1.6e+02 Score=29.65 Aligned_cols=61 Identities=13% Similarity=0.180 Sum_probs=33.2
Q ss_pred EEEeCCCCEEEEEeCCCCeEEEEEeCCCCCc-ceeEe-cccCCCC------cCceEECCCCC-EEEEeec
Q 018474 195 IALSKNEDFVVVCESWKFRCRRYWLKGDRAG-ILDAF-IENLPGG------PDNINLAPDGS-FWIGLIK 255 (355)
Q Consensus 195 i~~~~dg~~l~v~~~~~~~i~~~~~~~~~~~-~~~~~-~~~~~g~------p~~i~~d~~G~-lwv~~~~ 255 (355)
+.+..|+..|.-+....+.|-+||+.....- ..+.. .+..+.. -.+++.|+.|. +++.+..
T Consensus 223 vv~fkDe~tlaSaga~D~~iKVWDLRk~~~~~r~ep~~~~~~~t~skrs~G~~nL~lDssGt~L~AsCtD 292 (720)
T KOG0321|consen 223 VVLFKDESTLASAGAADSTIKVWDLRKNYTAYRQEPRGSDKYPTHSKRSVGQVNLILDSSGTYLFASCTD 292 (720)
T ss_pred EEEEeccceeeeccCCCcceEEEeecccccccccCCCcccCccCcccceeeeEEEEecCCCCeEEEEecC
Confidence 4566788866666555778888998643211 10100 1111110 23578899996 5666554
No 334
>PF00400 WD40: WD domain, G-beta repeat; InterPro: IPR019781 WD-40 repeats (also known as WD or beta-transducin repeats) are short ~40 amino acid motifs, often terminating in a Trp-Asp (W-D) dipeptide. WD40 repeats usually assume a 7-8 bladed beta-propeller fold, but proteins have been found with 4 to 16 repeated units, which also form a circularised beta-propeller structure. WD-repeat proteins are a large family found in all eukaryotes and are implicated in a variety of functions ranging from signal transduction and transcription regulation to cell cycle control and apoptosis. Repeated WD40 motifs act as a site for protein-protein interaction, and proteins containing WD40 repeats are known to serve as platforms for the assembly of protein complexes or mediators of transient interplay among other proteins. The specificity of the proteins is determined by the sequences outside the repeats themselves. Examples of such complexes are G proteins (beta subunit is a beta-propeller), TAFII transcription factor, and E3 ubiquitin ligase [, ]. In Arabidopsis spp., several WD40-containing proteins act as key regulators of plant-specific developmental events.; PDB: 2ZKQ_a 3CFV_B 3CFS_B 1PEV_A 1NR0_A 1VYH_T 3RFH_A 3O2Z_T 3FRX_C 3U5G_g ....
Probab=65.20 E-value=21 Score=20.51 Aligned_cols=31 Identities=13% Similarity=0.190 Sum_probs=24.1
Q ss_pred CCCCCCceEEEeeCCCeEEEEecCCEEEEEE
Q 018474 49 GCVNHPEDVSVVVSKGALYTATRDGWVKYFI 79 (355)
Q Consensus 49 ~~~~~p~~i~~d~~~g~l~~~~~~g~i~~~~ 79 (355)
+.-....+|++.+.+..+.+++.|+.|..+|
T Consensus 9 ~h~~~i~~i~~~~~~~~~~s~~~D~~i~vwd 39 (39)
T PF00400_consen 9 GHSSSINSIAWSPDGNFLASGSSDGTIRVWD 39 (39)
T ss_dssp SSSSSEEEEEEETTSSEEEEEETTSEEEEEE
T ss_pred CCCCcEEEEEEecccccceeeCCCCEEEEEC
Confidence 3346678899997777788888899888765
No 335
>PRK13616 lipoprotein LpqB; Provisional
Probab=64.82 E-value=1.6e+02 Score=29.68 Aligned_cols=150 Identities=13% Similarity=0.085 Sum_probs=79.2
Q ss_pred CCCCceEEEeeCCCeEE-EEe-------cCCEEEEEEcCCCeeEEeeccCCCcccCeEECCCC-CEEEEeCCCcEEEEc-
Q 018474 51 VNHPEDVSVVVSKGALY-TAT-------RDGWVKYFILHNETLVNWKHIDSQSLLGLTTTKDG-GVILCDNEKGLLKVT- 120 (355)
Q Consensus 51 ~~~p~~i~~d~~~g~l~-~~~-------~~g~i~~~~~~~g~~~~~~~~~~~p~~gl~~d~~g-~L~v~~~~~gl~~~~- 120 (355)
...+.+.++.++++.+. +.. ....|+..+. .+..+.+.. +..-. .-.++++| .||+......+.++.
T Consensus 349 ~~~vsspaiSpdG~~vA~v~~~~~~~~d~~s~Lwv~~~-gg~~~~lt~-g~~~t-~PsWspDG~~lw~v~dg~~~~~v~~ 425 (591)
T PRK13616 349 MGNITSAALSRSGRQVAAVVTLGRGAPDPASSLWVGPL-GGVAVQVLE-GHSLT-RPSWSLDADAVWVVVDGNTVVRVIR 425 (591)
T ss_pred ccCcccceECCCCCEEEEEEeecCCCCCcceEEEEEeC-CCcceeeec-CCCCC-CceECCCCCceEEEecCcceEEEec
Confidence 35667888886665543 331 1236777765 444444432 22233 55688885 588875443343333
Q ss_pred C--CC-eEEEcCC--------cCCcccEEEccCC-cEEEEeCCCCCCCccccccccccCCCCeEEE---EeCCCCeEEE-
Q 018474 121 E--EG-VEAIVPD--------ASFTNDVIAASDG-TLYFTVASTKYTPTDFYKDMAEGKPYGQLRK---YDPKLKETTV- 184 (355)
Q Consensus 121 ~--~g-~~~~~~~--------~~~~~~l~~d~dG-~ly~~d~~~~~~~~~~~~~~~~~~~~g~l~~---~dp~~~~~~~- 184 (355)
. ++ +..+... ...+.++.+++|| +|.+.-. +.++. .....|+.+.
T Consensus 426 ~~~~gql~~~~vd~ge~~~~~~g~Issl~wSpDG~RiA~i~~-------------------g~v~Va~Vvr~~~G~~~l~ 486 (591)
T PRK13616 426 DPATGQLARTPVDASAVASRVPGPISELQLSRDGVRAAMIIG-------------------GKVYLAVVEQTEDGQYALT 486 (591)
T ss_pred cCCCceEEEEeccCchhhhccCCCcCeEEECCCCCEEEEEEC-------------------CEEEEEEEEeCCCCceeec
Confidence 1 23 3221110 1358889999999 5655431 12222 1222343222
Q ss_pred ----eeccccc-cccEEEeCCCCEEEEEeC-CCCeEEEEEeCCCC
Q 018474 185 ----LHEGFYF-ANGIALSKNEDFVVVCES-WKFRCRRYWLKGDR 223 (355)
Q Consensus 185 ----~~~~~~~-pngi~~~~dg~~l~v~~~-~~~~i~~~~~~~~~ 223 (355)
+...+.. +..+.+..++. |++... ....++++.++|..
T Consensus 487 ~~~~l~~~l~~~~~~l~W~~~~~-L~V~~~~~~~~v~~v~vDG~~ 530 (591)
T PRK13616 487 NPREVGPGLGDTAVSLDWRTGDS-LVVGRSDPEHPVWYVNLDGSN 530 (591)
T ss_pred ccEEeecccCCccccceEecCCE-EEEEecCCCCceEEEecCCcc
Confidence 3333433 46788888887 555443 34568888887753
No 336
>PF10647 Gmad1: Lipoprotein LpqB beta-propeller domain; InterPro: IPR018910 The Gmad1 domain is found associated with IPR019606 from INTERPRO, in bacterial spore formation. It is predicted to have a beta-propeller fold and to have a passive binding role rather than a catalytic function owing to the low number of conserved hydrophilic residues.
Probab=63.58 E-value=1.1e+02 Score=27.07 Aligned_cols=151 Identities=15% Similarity=0.028 Sum_probs=76.6
Q ss_pred CCceEEEeeCCCeEEEEe---cCCEEEEEEcCCCeeEEeeccCCCcccCeEECCCCCEEEEeCCCcEEEEc---CCC-eE
Q 018474 53 HPEDVSVVVSKGALYTAT---RDGWVKYFILHNETLVNWKHIDSQSLLGLTTTKDGGVILCDNEKGLLKVT---EEG-VE 125 (355)
Q Consensus 53 ~p~~i~~d~~~g~l~~~~---~~g~i~~~~~~~g~~~~~~~~~~~p~~gl~~d~~g~L~v~~~~~gl~~~~---~~g-~~ 125 (355)
.+++.++.+++..+.+.. ....++.... .+...... .+.... .-.+|++|.+|+........++. .++ .+
T Consensus 25 ~~~s~AvS~dg~~~A~v~~~~~~~~L~~~~~-~~~~~~~~-~g~~l~-~PS~d~~g~~W~v~~~~~~~~~~~~~~~g~~~ 101 (253)
T PF10647_consen 25 DVTSPAVSPDGSRVAAVSEGDGGRSLYVGPA-GGPVRPVL-TGGSLT-RPSWDPDGWVWTVDDGSGGVRVVRDSASGTGE 101 (253)
T ss_pred cccceEECCCCCeEEEEEEcCCCCEEEEEcC-CCcceeec-cCCccc-cccccCCCCEEEEEcCCCceEEEEecCCCcce
Confidence 677888885555444433 2344555443 44443332 222333 55689999999997664433332 244 22
Q ss_pred E--EcCC-cC-CcccEEEccCC-cEEEEeCCCCCCCccccccccccCCCCeEEEE----eCCC-C-e----EEEeecccc
Q 018474 126 A--IVPD-AS-FTNDVIAASDG-TLYFTVASTKYTPTDFYKDMAEGKPYGQLRKY----DPKL-K-E----TTVLHEGFY 190 (355)
Q Consensus 126 ~--~~~~-~~-~~~~l~~d~dG-~ly~~d~~~~~~~~~~~~~~~~~~~~g~l~~~----dp~~-~-~----~~~~~~~~~ 190 (355)
. +... .. .+..+.+++|| ++-+.... ...+.++.- |.+. . . .+.......
T Consensus 102 ~~~v~~~~~~~~I~~l~vSpDG~RvA~v~~~---------------~~~~~v~va~V~r~~~g~~~~l~~~~~~~~~~~~ 166 (253)
T PF10647_consen 102 PVEVDWPGLRGRITALRVSPDGTRVAVVVED---------------GGGGRVYVAGVVRDGDGVPRRLTGPRRVAPPLLS 166 (253)
T ss_pred eEEecccccCCceEEEEECCCCcEEEEEEec---------------CCCCeEEEEEEEeCCCCCcceeccceEecccccC
Confidence 2 2221 12 68889999999 44433211 001222211 2211 0 1 111111133
Q ss_pred ccccEEEeCCCCEEEEEeCCCCeEEE-EEeCC
Q 018474 191 FANGIALSKNEDFVVVCESWKFRCRR-YWLKG 221 (355)
Q Consensus 191 ~pngi~~~~dg~~l~v~~~~~~~i~~-~~~~~ 221 (355)
....+++..++..++........++. +.++|
T Consensus 167 ~v~~v~W~~~~~L~V~~~~~~~~~~~~v~~dG 198 (253)
T PF10647_consen 167 DVTDVAWSDDSTLVVLGRSAGGPVVRLVSVDG 198 (253)
T ss_pred cceeeeecCCCEEEEEeCCCCCceeEEEEccC
Confidence 45678899988866666655555666 55555
No 337
>KOG2315 consensus Predicted translation initiation factor related to eIF-3a [Translation, ribosomal structure and biogenesis]
Probab=63.21 E-value=1.6e+02 Score=28.99 Aligned_cols=119 Identities=17% Similarity=0.200 Sum_probs=63.7
Q ss_pred eEEEEeCCCCeEEEeeccccccccEEEeCCCC-EEEEEeCCCCeEEEEEeCCCCCcceeEecccCCCCcCc-eEECCCCC
Q 018474 171 QLRKYDPKLKETTVLHEGFYFANGIALSKNED-FVVVCESWKFRCRRYWLKGDRAGILDAFIENLPGGPDN-INLAPDGS 248 (355)
Q Consensus 171 ~l~~~dp~~~~~~~~~~~~~~pngi~~~~dg~-~l~v~~~~~~~i~~~~~~~~~~~~~~~~~~~~~g~p~~-i~~d~~G~ 248 (355)
.||.++.++.+..+-...-.--..++++++++ +..+..-+-..+..|++++.-. + .++.-|+| +.+.+.|+
T Consensus 252 ~Lyll~t~g~s~~V~L~k~GPVhdv~W~~s~~EF~VvyGfMPAkvtifnlr~~~v-----~--df~egpRN~~~fnp~g~ 324 (566)
T KOG2315|consen 252 TLYLLATQGESVSVPLLKEGPVHDVTWSPSGREFAVVYGFMPAKVTIFNLRGKPV-----F--DFPEGPRNTAFFNPHGN 324 (566)
T ss_pred eEEEEEecCceEEEecCCCCCceEEEECCCCCEEEEEEecccceEEEEcCCCCEe-----E--eCCCCCccceEECCCCC
Confidence 57777765444433322222235678888886 5555556677888888765311 1 23334676 66899998
Q ss_pred EEE-EeecCCchhhHhhhcchhHHHHHHhccchhhcccCCCCCCceEEEEEeCCCCeEEEEEE
Q 018474 249 FWI-GLIKMNQTGVRAIQKCREKWELLDAYPGLISLLLPMGSDAGARVVKVDGNDGKIIRDFN 310 (355)
Q Consensus 249 lwv-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~g~~~~~~~ 310 (355)
|.+ +-++.-....++..-.. ++.+.+. ...+..++...| +|+.+..-+
T Consensus 325 ii~lAGFGNL~G~mEvwDv~n--~K~i~~~-----------~a~~tt~~eW~P-dGe~flTAT 373 (566)
T KOG2315|consen 325 IILLAGFGNLPGDMEVWDVPN--RKLIAKF-----------KAANTTVFEWSP-DGEYFLTAT 373 (566)
T ss_pred EEEEeecCCCCCceEEEeccc--hhhcccc-----------ccCCceEEEEcC-CCcEEEEEe
Confidence 644 44443222222222111 2222221 122346777888 888765543
No 338
>PF08553 VID27: VID27 cytoplasmic protein; InterPro: IPR013863 This entry represents fungal and plant proteins and contains many hypothetical proteins. Vid27p is a cytoplasmic protein of unknown function, possibly regulates import of fructose-1,6-bisphosphatase into Vacuolar Import and Degradation (Vid) vesicles and is not essential for proteasome-dependent degradation of fructose-1,6-bisphosphatase (FBPase) [, ].
Probab=63.08 E-value=20 Score=37.19 Aligned_cols=65 Identities=15% Similarity=0.177 Sum_probs=45.7
Q ss_pred ceEEEeeCCCeEEEEecCCEEEEEEcCCCeeEEeeccCCCcccCeEECCCCCEEEEeCCCcEEEEc
Q 018474 55 EDVSVVVSKGALYTATRDGWVKYFILHNETLVNWKHIDSQSLLGLTTTKDGGVILCDNEKGLLKVT 120 (355)
Q Consensus 55 ~~i~~d~~~g~l~~~~~~g~i~~~~~~~g~~~~~~~~~~~p~~gl~~d~~g~L~v~~~~~gl~~~~ 120 (355)
.|++-. .+|.+.+|+..|.|..||....+.+...+..+.|..+|.+..||+-.+|+...-|+.++
T Consensus 581 s~~aTt-~~G~iavgs~~G~IRLyd~~g~~AKT~lp~lG~pI~~iDvt~DGkwilaTc~tyLlLi~ 645 (794)
T PF08553_consen 581 SCFATT-EDGYIAVGSNKGDIRLYDRLGKRAKTALPGLGDPIIGIDVTADGKWILATCKTYLLLID 645 (794)
T ss_pred eEEEec-CCceEEEEeCCCcEEeecccchhhhhcCCCCCCCeeEEEecCCCcEEEEeecceEEEEE
Confidence 467777 78999999999999999863223333333324443388888999988888876666665
No 339
>PLN02193 nitrile-specifier protein
Probab=62.96 E-value=1.5e+02 Score=28.77 Aligned_cols=110 Identities=11% Similarity=0.079 Sum_probs=60.1
Q ss_pred CCeEEEEe-c-----CCEEEEEEcCCCeeEEeeccCC--Cc---ccCeEECCCCCEEEEeCCC------cEEEEcC-CC-
Q 018474 63 KGALYTAT-R-----DGWVKYFILHNETLVNWKHIDS--QS---LLGLTTTKDGGVILCDNEK------GLLKVTE-EG- 123 (355)
Q Consensus 63 ~g~l~~~~-~-----~g~i~~~~~~~g~~~~~~~~~~--~p---~~gl~~d~~g~L~v~~~~~------gl~~~~~-~g- 123 (355)
++.||+-. . ...++++|+.+.+|+.+..... .| + +++. -+++|||..... .+.+++. +.
T Consensus 228 ~~~lYvfGG~~~~~~~ndv~~yD~~t~~W~~l~~~~~~P~~R~~h-~~~~-~~~~iYv~GG~~~~~~~~~~~~yd~~t~~ 305 (470)
T PLN02193 228 GSTLYVFGGRDASRQYNGFYSFDTTTNEWKLLTPVEEGPTPRSFH-SMAA-DEENVYVFGGVSATARLKTLDSYNIVDKK 305 (470)
T ss_pred CCEEEEECCCCCCCCCccEEEEECCCCEEEEcCcCCCCCCCccce-EEEE-ECCEEEEECCCCCCCCcceEEEEECCCCE
Confidence 66788632 1 2468899999998887654321 11 2 2333 367888864321 2567774 44
Q ss_pred eEEEcCCc----CCcccEEEccCCcEEEEeCCCCCCCccccccccccCCCCeEEEEeCCCCeEEEeec
Q 018474 124 VEAIVPDA----SFTNDVIAASDGTLYFTVASTKYTPTDFYKDMAEGKPYGQLRKYDPKLKETTVLHE 187 (355)
Q Consensus 124 ~~~~~~~~----~~~~~l~~d~dG~ly~~d~~~~~~~~~~~~~~~~~~~~g~l~~~dp~~~~~~~~~~ 187 (355)
.+.+.... ..-...++.-+|.+|+.-... +.....+++||+++.+++.+..
T Consensus 306 W~~~~~~~~~~~~R~~~~~~~~~gkiyviGG~~-------------g~~~~dv~~yD~~t~~W~~~~~ 360 (470)
T PLN02193 306 WFHCSTPGDSFSIRGGAGLEVVQGKVWVVYGFN-------------GCEVDDVHYYDPVQDKWTQVET 360 (470)
T ss_pred EEeCCCCCCCCCCCCCcEEEEECCcEEEEECCC-------------CCccCceEEEECCCCEEEEecc
Confidence 44433211 011112222357788753220 0112469999999999987653
No 340
>PF09826 Beta_propel: Beta propeller domain; InterPro: IPR019198 This entry consists of predicted secreted proteins containing a C-terminal beta-propeller domain distantly related to WD-40 repeats.
Probab=62.81 E-value=1.7e+02 Score=29.09 Aligned_cols=56 Identities=16% Similarity=0.219 Sum_probs=42.6
Q ss_pred CceEEEEEeCCCCeEEEEEECCCCCcccceeEEEEeCCEEEEeecCC-CeEEEeeCCCCC
Q 018474 291 AGARVVKVDGNDGKIIRDFNDPDATYISFVTSAAEFDGNLYLASLQS-NFIGILPLDGPE 349 (355)
Q Consensus 291 ~~~~v~~~~~~~g~~~~~~~~~~g~~~~~~~~~~~~~g~L~v~~~~~-~~i~~~~~~~~~ 349 (355)
..+.|+.+|+ +-+.+-.+.+-. ....+.++-+.+++.|+-|+.. +-+.+++|.+..
T Consensus 302 s~N~lyVLD~-~L~~vG~l~~la--~gE~IysvRF~Gd~~Y~VTFrqvDPLfviDLsdP~ 358 (521)
T PF09826_consen 302 SSNNLYVLDE-DLKIVGSLEGLA--PGERIYSVRFMGDRAYLVTFRQVDPLFVIDLSDPA 358 (521)
T ss_pred ceEEEEEECC-CCcEeEEccccC--CCceEEEEEEeCCeEEEEEEeecCceEEEECCCCC
Confidence 3467999997 888777775411 2347888999999999999877 888888887754
No 341
>COG5276 Uncharacterized conserved protein [Function unknown]
Probab=62.37 E-value=1.2e+02 Score=27.48 Aligned_cols=97 Identities=15% Similarity=0.113 Sum_probs=52.1
Q ss_pred CCCCEEEEeCCCcEEEEc-C--CCeEEEcCCc--CCcccEEEccCC-cEEEEeCCCCCCCccccccccccCCCCeEEEEe
Q 018474 103 KDGGVILCDNEKGLLKVT-E--EGVEAIVPDA--SFTNDVIAASDG-TLYFTVASTKYTPTDFYKDMAEGKPYGQLRKYD 176 (355)
Q Consensus 103 ~~g~L~v~~~~~gl~~~~-~--~g~~~~~~~~--~~~~~l~~d~dG-~ly~~d~~~~~~~~~~~~~~~~~~~~g~l~~~d 176 (355)
++...|++++..||..+| . +..+.+.... ....++.+ .| -.|++|.. .+++.+|
T Consensus 95 se~yvyvad~ssGL~IvDIS~P~sP~~~~~lnt~gyaygv~v--sGn~aYVadld------------------dgfLivd 154 (370)
T COG5276 95 SEEYVYVADWSSGLRIVDISTPDSPTLIGFLNTDGYAYGVYV--SGNYAYVADLD------------------DGFLIVD 154 (370)
T ss_pred cccEEEEEcCCCceEEEeccCCCCcceeccccCCceEEEEEe--cCCEEEEeecc------------------CcEEEEE
Confidence 456799999999988887 2 3222211110 11222222 34 47777643 2455555
Q ss_pred CCCCeEEEeecccccccc----EEEeCCCCEEEEEeCCCCeEEEEEeCCC
Q 018474 177 PKLKETTVLHEGFYFANG----IALSKNEDFVVVCESWKFRCRRYWLKGD 222 (355)
Q Consensus 177 p~~~~~~~~~~~~~~png----i~~~~dg~~l~v~~~~~~~i~~~~~~~~ 222 (355)
-.+-+-..+......|.+ +++| |+.-|++.. .+++...|++.+
T Consensus 155 vsdpssP~lagrya~~~~d~~~v~IS--Gn~AYvA~~-d~GL~ivDVSnp 201 (370)
T COG5276 155 VSDPSSPQLAGRYALPGGDTHDVAIS--GNYAYVAWR-DGGLTIVDVSNP 201 (370)
T ss_pred CCCCCCceeeeeeccCCCCceeEEEe--cCeEEEEEe-CCCeEEEEccCC
Confidence 433322223323333333 4554 667888864 578999998764
No 342
>KOG1009 consensus Chromatin assembly complex 1 subunit B/CAC2 (contains WD40 repeats) [Chromatin structure and dynamics; Replication, recombination and repair]
Probab=62.30 E-value=49 Score=31.03 Aligned_cols=55 Identities=16% Similarity=0.126 Sum_probs=33.6
Q ss_pred cccccEEEeCCCCEEEEEeCCCCeEEEEEeCCCCCcceeEecccCCCCcCceEECCCCC
Q 018474 190 YFANGIALSKNEDFVVVCESWKFRCRRYWLKGDRAGILDAFIENLPGGPDNINLAPDGS 248 (355)
Q Consensus 190 ~~pngi~~~~dg~~l~v~~~~~~~i~~~~~~~~~~~~~~~~~~~~~g~p~~i~~d~~G~ 248 (355)
.-+.-++.++|++ ..++.+..+.+..+++.. +......+....++.+++.|+.+.
T Consensus 124 ~diydL~Ws~d~~-~l~s~s~dns~~l~Dv~~---G~l~~~~~dh~~yvqgvawDpl~q 178 (434)
T KOG1009|consen 124 DDIYDLAWSPDSN-FLVSGSVDNSVRLWDVHA---GQLLAILDDHEHYVQGVAWDPLNQ 178 (434)
T ss_pred cchhhhhccCCCc-eeeeeeccceEEEEEecc---ceeEeeccccccccceeecchhhh
Confidence 3466789999998 455566778888888743 333333333344566666554443
No 343
>KOG0267 consensus Microtubule severing protein katanin p80 subunit B (contains WD40 repeats) [Cell cycle control, cell division, chromosome partitioning]
Probab=62.22 E-value=56 Score=33.12 Aligned_cols=94 Identities=13% Similarity=0.085 Sum_probs=54.8
Q ss_pred CCCceEEEeeCCCeEEEEecCCEEEEEEcCCCeeEEeecc-CCCcccCeEECCCCCEEEEeCCCc-EEEEc-C-CC-eEE
Q 018474 52 NHPEDVSVVVSKGALYTATRDGWVKYFILHNETLVNWKHI-DSQSLLGLTTTKDGGVILCDNEKG-LLKVT-E-EG-VEA 126 (355)
Q Consensus 52 ~~p~~i~~d~~~g~l~~~~~~g~i~~~~~~~g~~~~~~~~-~~~p~~gl~~d~~g~L~v~~~~~g-l~~~~-~-~g-~~~ 126 (355)
..-+++.++.....+-.+..+|.|..+|.+.++..+-... ...+. .+.+.+-|.....-.... +-..| + .| .+.
T Consensus 71 spIeSl~f~~~E~LlaagsasgtiK~wDleeAk~vrtLtgh~~~~~-sv~f~P~~~~~a~gStdtd~~iwD~Rk~Gc~~~ 149 (825)
T KOG0267|consen 71 SPIESLTFDTSERLLAAGSASGTIKVWDLEEAKIVRTLTGHLLNIT-SVDFHPYGEFFASGSTDTDLKIWDIRKKGCSHT 149 (825)
T ss_pred CcceeeecCcchhhhcccccCCceeeeehhhhhhhhhhhccccCcc-eeeeccceEEeccccccccceehhhhccCceee
Confidence 4457888886666666677789999999877765432221 12344 566666555442111122 33334 3 56 555
Q ss_pred EcCCcCCcccEEEccCCcEE
Q 018474 127 IVPDASFTNDVIAASDGTLY 146 (355)
Q Consensus 127 ~~~~~~~~~~l~~d~dG~ly 146 (355)
+......++.+.+.|+|+.-
T Consensus 150 ~~s~~~vv~~l~lsP~Gr~v 169 (825)
T KOG0267|consen 150 YKSHTRVVDVLRLSPDGRWV 169 (825)
T ss_pred ecCCcceeEEEeecCCCcee
Confidence 55544567777888988643
No 344
>TIGR03547 muta_rot_YjhT mutatrotase, YjhT family. Members of this protein family contain multiple copies of the beta-propeller-forming Kelch repeat. All are full-length homologs to YjhT of Escherichia coli, which has been identified as a mutarotase for sialic acid. This protein improves bacterial ability to obtain host sialic acid, and thus serves as a virulence factor. Some bacteria carry what appears to be a cyclically permuted homolog of this protein.
Probab=62.12 E-value=1.3e+02 Score=27.66 Aligned_cols=87 Identities=9% Similarity=0.032 Sum_probs=44.6
Q ss_pred CCeEEEEe--cCCEEEEEEc--CCCeeEEeeccC--CCcccCeEECCCCCEEEEeCC------------CcEEEEcC-CC
Q 018474 63 KGALYTAT--RDGWVKYFIL--HNETLVNWKHID--SQSLLGLTTTKDGGVILCDNE------------KGLLKVTE-EG 123 (355)
Q Consensus 63 ~g~l~~~~--~~g~i~~~~~--~~g~~~~~~~~~--~~p~~gl~~d~~g~L~v~~~~------------~gl~~~~~-~g 123 (355)
++.+|+.. ....++++|. .++++....... .+..-+++. -+++|||.... ..+++||+ +.
T Consensus 17 ~~~vyv~GG~~~~~~~~~d~~~~~~~W~~l~~~p~~~R~~~~~~~-~~~~iYv~GG~~~~~~~~~~~~~~~v~~Yd~~~~ 95 (346)
T TIGR03547 17 GDKVYVGLGSAGTSWYKLDLKKPSKGWQKIADFPGGPRNQAVAAA-IDGKLYVFGGIGKANSEGSPQVFDDVYRYDPKKN 95 (346)
T ss_pred CCEEEEEccccCCeeEEEECCCCCCCceECCCCCCCCcccceEEE-ECCEEEEEeCCCCCCCCCcceecccEEEEECCCC
Confidence 66788742 2346788885 345666554332 121103333 36789986532 13677884 44
Q ss_pred -eEEEcCCc-CCcccE-EE-ccCCcEEEEeC
Q 018474 124 -VEAIVPDA-SFTNDV-IA-ASDGTLYFTVA 150 (355)
Q Consensus 124 -~~~~~~~~-~~~~~l-~~-d~dG~ly~~d~ 150 (355)
-+.+.... ..-.+. ++ .-+|.||+...
T Consensus 96 ~W~~~~~~~p~~~~~~~~~~~~~g~IYviGG 126 (346)
T TIGR03547 96 SWQKLDTRSPVGLLGASGFSLHNGQAYFTGG 126 (346)
T ss_pred EEecCCCCCCCcccceeEEEEeCCEEEEEcC
Confidence 44443211 111122 22 35789998654
No 345
>KOG0307 consensus Vesicle coat complex COPII, subunit SEC31 [Intracellular trafficking, secretion, and vesicular transport]
Probab=61.31 E-value=23 Score=37.37 Aligned_cols=148 Identities=9% Similarity=0.114 Sum_probs=78.6
Q ss_pred eEEEeeCCCeEEE-EecCCEEEEEEcCCCe-eEEeeccCC--CcccCeEECCCC--CEEEEeCCCc--EEE-Ec-C--CC
Q 018474 56 DVSVVVSKGALYT-ATRDGWVKYFILHNET-LVNWKHIDS--QSLLGLTTTKDG--GVILCDNEKG--LLK-VT-E--EG 123 (355)
Q Consensus 56 ~i~~d~~~g~l~~-~~~~g~i~~~~~~~g~-~~~~~~~~~--~p~~gl~~d~~g--~L~v~~~~~g--l~~-~~-~--~g 123 (355)
++.|.++-..++. ++.+|++..+|.+..+ +..+....+ +.. ++.+++++ +|+++...++ ++. .| . +-
T Consensus 166 ~lsWNrkvqhILAS~s~sg~~~iWDlr~~~pii~ls~~~~~~~~S-~l~WhP~~aTql~~As~dd~~PviqlWDlR~ass 244 (1049)
T KOG0307|consen 166 CLSWNRKVSHILASGSPSGRAVIWDLRKKKPIIKLSDTPGRMHCS-VLAWHPDHATQLLVASGDDSAPVIQLWDLRFASS 244 (1049)
T ss_pred EeccchhhhHHhhccCCCCCceeccccCCCcccccccCCCcccee-eeeeCCCCceeeeeecCCCCCceeEeecccccCC
Confidence 3444433333343 3446677777764332 333333333 245 78888876 5888875544 222 23 1 11
Q ss_pred -eEEEcCCcCCcccEEEccCC-cEEEEeCCCCCCCccccccccccCCCCeEEEEeCCCCeEEE-eeccccccccEEEeCC
Q 018474 124 -VEAIVPDASFTNDVIAASDG-TLYFTVASTKYTPTDFYKDMAEGKPYGQLRKYDPKLKETTV-LHEGFYFANGIALSKN 200 (355)
Q Consensus 124 -~~~~~~~~~~~~~l~~d~dG-~ly~~d~~~~~~~~~~~~~~~~~~~~g~l~~~dp~~~~~~~-~~~~~~~pngi~~~~d 200 (355)
++++......+-++...+.+ ++.++ ....++++++|++++++.- +......-.-+.++|.
T Consensus 245 P~k~~~~H~~GilslsWc~~D~~lllS-----------------sgkD~~ii~wN~~tgEvl~~~p~~~nW~fdv~w~pr 307 (1049)
T KOG0307|consen 245 PLKILEGHQRGILSLSWCPQDPRLLLS-----------------SGKDNRIICWNPNTGEVLGELPAQGNWCFDVQWCPR 307 (1049)
T ss_pred chhhhcccccceeeeccCCCCchhhhc-----------------ccCCCCeeEecCCCceEeeecCCCCcceeeeeecCC
Confidence 33332222344444444433 34333 2347789999999987532 1111111223566666
Q ss_pred CCEEEEEeCCCCeEEEEEeCC
Q 018474 201 EDFVVVCESWKFRCRRYWLKG 221 (355)
Q Consensus 201 g~~l~v~~~~~~~i~~~~~~~ 221 (355)
.-.++-+.+..+.|..|.+.+
T Consensus 308 ~P~~~A~asfdgkI~I~sl~~ 328 (1049)
T KOG0307|consen 308 NPSVMAAASFDGKISIYSLQG 328 (1049)
T ss_pred Ccchhhhheeccceeeeeeec
Confidence 655666667788888888865
No 346
>PF10731 Anophelin: Thrombin inhibitor from mosquito; InterPro: IPR018932 Members of this family are all inhibitors of thrombin, the peptidase that is at the end of the blood coagulation cascade and which creates the clot by cleaving fibrinogen. The interaction between thrombin and fibrinogen involves two different areas of contact - via the thrombin active site and via a second substrate-binding site known as an exosite. The inhibitor acts by blocking the exosite, rather than by interacting with the active site. The inhibitors are from mosquitoes that feed on human blood and which, by inhibiting thrombin, prevent the blood from clotting and keep it flowing.
Probab=60.58 E-value=10 Score=24.89 Aligned_cols=17 Identities=29% Similarity=0.382 Sum_probs=9.6
Q ss_pred CChhhHHHHHHHHHHHHH
Q 018474 1 MAPKSFLLACLLAFTVQI 18 (355)
Q Consensus 1 ~~~~~~~~~~~~~~~~~~ 18 (355)
|++|.|+.+.+ |+++++
T Consensus 1 MA~Kl~vialL-C~aLva 17 (65)
T PF10731_consen 1 MASKLIVIALL-CVALVA 17 (65)
T ss_pred CcchhhHHHHH-HHHHHH
Confidence 89996655443 443333
No 347
>COG4590 ABC-type uncharacterized transport system, permease component [General function prediction only]
Probab=60.26 E-value=1e+02 Score=29.75 Aligned_cols=147 Identities=16% Similarity=0.208 Sum_probs=72.1
Q ss_pred ccEEEeCCCCEEEEEeCCCCeEEEEEeCCCCCcceeEecccCCC------------CcCc---eEECCCCC--EEEEeec
Q 018474 193 NGIALSKNEDFVVVCESWKFRCRRYWLKGDRAGILDAFIENLPG------------GPDN---INLAPDGS--FWIGLIK 255 (355)
Q Consensus 193 ngi~~~~dg~~l~v~~~~~~~i~~~~~~~~~~~~~~~~~~~~~g------------~p~~---i~~d~~G~--lwv~~~~ 255 (355)
..+-++|||+.+|+... +.+..+.++....... ++.+..|| +..+ ++.++||- -|.-...
T Consensus 224 ~qllL~Pdg~~LYv~~g--~~~~v~~L~~r~l~~r-kl~~dspg~~~~~Vte~l~lL~Gg~SLLv~~~dG~vsQWFdvr~ 300 (733)
T COG4590 224 SQLLLTPDGKTLYVRTG--SELVVALLDKRSLQIR-KLVDDSPGDSRHQVTEQLYLLSGGFSLLVVHEDGLVSQWFDVRR 300 (733)
T ss_pred HhhEECCCCCEEEEecC--CeEEEEeecccccchh-hhhhcCCCchHHHHHHHHHHHhCceeEEEEcCCCceeeeeeeec
Confidence 45779999999999753 7788888755332222 23333332 1112 34566663 2443322
Q ss_pred CCchhhHhhhcchhHHHHHHhccchhhcccCCCCCCceEEEEEeCCCCeEEEEEECCCCC-----cccceeEEEEeCCEE
Q 018474 256 MNQTGVRAIQKCREKWELLDAYPGLISLLLPMGSDAGARVVKVDGNDGKIIRDFNDPDAT-----YISFVTSAAEFDGNL 330 (355)
Q Consensus 256 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~g~~~~~~~~~~g~-----~~~~~~~~~~~~g~L 330 (355)
.....+ .+ .|.+... |...+-+.+ .....+.+.+++ +|+....++..+-. ......-+......-
T Consensus 301 ~~~p~l--~h----~R~f~l~-pa~~~~l~p--e~~rkgF~~l~~-~G~L~~f~st~~~~lL~~~~~~~~~~~~~Sp~~~ 370 (733)
T COG4590 301 DGQPHL--NH----IRNFKLA-PAEVQFLLP--ETNRKGFYSLYR-NGTLQSFYSTSEKLLLFERAYQAPQLVAMSPNQA 370 (733)
T ss_pred CCCCcc--ee----eeccccC-cccceeecc--ccccceEEEEcC-CCceeeeecccCcceehhhhhcCcceeeeCcccc
Confidence 211111 00 1111110 111111100 122346777788 88755444432221 111222233444555
Q ss_pred EEeecCCCeEEEeeCCCCCCCc
Q 018474 331 YLASLQSNFIGILPLDGPEPQL 352 (355)
Q Consensus 331 ~v~~~~~~~i~~~~~~~~~~~~ 352 (355)
|+.......|.++.++.+-|+.
T Consensus 371 ~Ll~e~~gki~~~~l~Nr~Pei 392 (733)
T COG4590 371 YLLSEDQGKIRLAQLENRNPEI 392 (733)
T ss_pred hheeecCCceEEEEecCCCCCc
Confidence 6666668889999998887764
No 348
>KOG3621 consensus WD40 repeat-containing protein [General function prediction only]
Probab=58.38 E-value=2.2e+02 Score=29.01 Aligned_cols=90 Identities=13% Similarity=0.141 Sum_probs=49.8
Q ss_pred CCCeEEEEecCCEEEEEEcCCCeeEEeeccC--CCcccCeEECCCCCEEEEeCCCcEEEEc---CCC---eEEEcC--C-
Q 018474 62 SKGALYTATRDGWVKYFILHNETLVNWKHID--SQSLLGLTTTKDGGVILCDNEKGLLKVT---EEG---VEAIVP--D- 130 (355)
Q Consensus 62 ~~g~l~~~~~~g~i~~~~~~~g~~~~~~~~~--~~p~~gl~~d~~g~L~v~~~~~gl~~~~---~~g---~~~~~~--~- 130 (355)
.+..+-+|+..|.+|.++...|+...+...+ +... ...+..+..+.++....|.+.+. ..+ ...+.. .
T Consensus 44 t~~~l~~GsS~G~lyl~~R~~~~~~~~~~~~~~~~~~-~~~vs~~e~lvAagt~~g~V~v~ql~~~~p~~~~~~t~~d~~ 122 (726)
T KOG3621|consen 44 TEEYLAMGSSAGSVYLYNRHTGEMRKLKNEGATGITC-VRSVSSVEYLVAAGTASGRVSVFQLNKELPRDLDYVTPCDKS 122 (726)
T ss_pred CCceEEEecccceEEEEecCchhhhcccccCccceEE-EEEecchhHhhhhhcCCceEEeehhhccCCCcceeecccccc
Confidence 4556667777777777777555444332211 1122 33444555565555555655554 211 111111 1
Q ss_pred -cCCcccEEEccCC-cEEEEeCCC
Q 018474 131 -ASFTNDVIAASDG-TLYFTVAST 152 (355)
Q Consensus 131 -~~~~~~l~~d~dG-~ly~~d~~~ 152 (355)
...+..+..++|| ++|.+|+.+
T Consensus 123 ~~~rVTal~Ws~~~~k~ysGD~~G 146 (726)
T KOG3621|consen 123 HKCRVTALEWSKNGMKLYSGDSQG 146 (726)
T ss_pred CCceEEEEEecccccEEeecCCCc
Confidence 1567778899999 899998763
No 349
>KOG1517 consensus Guanine nucleotide binding protein MIP1 [Cell cycle control, cell division, chromosome partitioning]
Probab=57.23 E-value=2.8e+02 Score=29.96 Aligned_cols=230 Identities=14% Similarity=0.131 Sum_probs=112.2
Q ss_pred CCCeEEEEecCCEEEEEEcC-C--CeeEE---eec-----cCCCcccCeEEC---CCCCEEEEeCCCcEEEEc-CCC---
Q 018474 62 SKGALYTATRDGWVKYFILH-N--ETLVN---WKH-----IDSQSLLGLTTT---KDGGVILCDNEKGLLKVT-EEG--- 123 (355)
Q Consensus 62 ~~g~l~~~~~~g~i~~~~~~-~--g~~~~---~~~-----~~~~p~~gl~~d---~~g~L~v~~~~~gl~~~~-~~g--- 123 (355)
+...+.+++.||.|..++.- + ++.+. |.. .+.+-. |+.+| ..|.|+++.. -..+++. ...
T Consensus 1122 D~aLlLtas~dGvIRIwk~y~~~~~~~eLVTaw~~Ls~~~~~~r~~-~~v~dWqQ~~G~Ll~tGd-~r~IRIWDa~~E~~ 1199 (1387)
T KOG1517|consen 1122 DDALLLTASSDGVIRIWKDYADKWKKPELVTAWSSLSDQLPGARGT-GLVVDWQQQSGHLLVTGD-VRSIRIWDAHKEQV 1199 (1387)
T ss_pred chhheeeeccCceEEEecccccccCCceeEEeeccccccCccCCCC-CeeeehhhhCCeEEecCC-eeEEEEEeccccee
Confidence 34456778888877666542 2 22222 211 112334 66676 4577877643 3455554 222
Q ss_pred eEEEcCCc-CCcccEEEcc-CCcEEEEeCCCCCCCccccccccccCCCCeEEEEeCCCCe----EEEeecc--ccccccE
Q 018474 124 VEAIVPDA-SFTNDVIAAS-DGTLYFTVASTKYTPTDFYKDMAEGKPYGQLRKYDPKLKE----TTVLHEG--FYFANGI 195 (355)
Q Consensus 124 ~~~~~~~~-~~~~~l~~d~-dG~ly~~d~~~~~~~~~~~~~~~~~~~~g~l~~~dp~~~~----~~~~~~~--~~~pngi 195 (355)
+.-++... ..+..+..|. .|++.++.-. .|.+-.||-..-. +.+.... ...-.++
T Consensus 1200 ~~diP~~s~t~vTaLS~~~~~gn~i~AGfa-----------------DGsvRvyD~R~a~~ds~v~~~R~h~~~~~Iv~~ 1262 (1387)
T KOG1517|consen 1200 VADIPYGSSTLVTALSADLVHGNIIAAGFA-----------------DGSVRVYDRRMAPPDSLVCVYREHNDVEPIVHL 1262 (1387)
T ss_pred EeecccCCCccceeecccccCCceEEEeec-----------------CCceEEeecccCCccccceeecccCCcccceeE
Confidence 22222221 5566666554 3577765322 4555555532111 1111111 1113455
Q ss_pred EEeCCCCEEEEEeCCCCeEEEEEeCCCC-CcceeEecccCCC-CcCceEECCCCCEEEEeecCCchhhHhhhcchhHHHH
Q 018474 196 ALSKNEDFVVVCESWKFRCRRYWLKGDR-AGILDAFIENLPG-GPDNINLAPDGSFWIGLIKMNQTGVRAIQKCREKWEL 273 (355)
Q Consensus 196 ~~~~dg~~l~v~~~~~~~i~~~~~~~~~-~~~~~~~~~~~~g-~p~~i~~d~~G~lwv~~~~~~~~~~~~~~~~~~~~~~ 273 (355)
.+-+.|-.=+|+.+..+.|..+|+.... .........-..| --..+.+-.+-.+..+...
T Consensus 1263 slq~~G~~elvSgs~~G~I~~~DlR~~~~e~~~~iv~~~~yGs~lTal~VH~hapiiAsGs~------------------ 1324 (1387)
T KOG1517|consen 1263 SLQRQGLGELVSGSQDGDIQLLDLRMSSKETFLTIVAHWEYGSALTALTVHEHAPIIASGSA------------------ 1324 (1387)
T ss_pred EeecCCCcceeeeccCCeEEEEecccCcccccceeeeccccCccceeeeeccCCCeeeecCc------------------
Confidence 6666665446777788899999986531 1111111100001 0122333333333332211
Q ss_pred HHhccchhhcccCCCCCCceEEEEEeCCCCeEEEEEECCC---CCcccceeEEEEeCCE-EEEeecCCCeEEEeeCCCC
Q 018474 274 LDAYPGLISLLLPMGSDAGARVVKVDGNDGKIIRDFNDPD---ATYISFVTSAAEFDGN-LYLASLQSNFIGILPLDGP 348 (355)
Q Consensus 274 ~~~~~~~~~~~~~~~~~~~~~v~~~~~~~g~~~~~~~~~~---g~~~~~~~~~~~~~g~-L~v~~~~~~~i~~~~~~~~ 348 (355)
..+..|+. .|+.+..+.... |.....++.++++..+ +...+...++|..|.-+..
T Consensus 1325 -------------------q~ikIy~~-~G~~l~~~k~n~~F~~q~~gs~scL~FHP~~~llAaG~~Ds~V~iYs~~k~ 1383 (1387)
T KOG1517|consen 1325 -------------------QLIKIYSL-SGEQLNIIKYNPGFMGQRIGSVSCLAFHPHRLLLAAGSADSTVSIYSCEKP 1383 (1387)
T ss_pred -------------------ceEEEEec-ChhhhcccccCcccccCcCCCcceeeecchhHhhhhccCCceEEEeecCCc
Confidence 34677787 777655554322 2333455667788755 4445677889988876654
No 350
>KOG0918 consensus Selenium-binding protein [Inorganic ion transport and metabolism]
Probab=56.98 E-value=32 Score=32.31 Aligned_cols=28 Identities=21% Similarity=0.291 Sum_probs=24.6
Q ss_pred cEEEeCCCCEEEEEeCCCCeEEEEEeCC
Q 018474 194 GIALSKNEDFVVVCESWKFRCRRYWLKG 221 (355)
Q Consensus 194 gi~~~~dg~~l~v~~~~~~~i~~~~~~~ 221 (355)
.+-+|-|.++||++....+-|++||++.
T Consensus 316 DilISmDDRFLYvs~WLHGDirQYdIsD 343 (476)
T KOG0918|consen 316 DILISLDDRFLYVSNWLHGDIRQYDISD 343 (476)
T ss_pred eeEEeecCcEEEEEeeeecceeeeccCC
Confidence 4568889999999999999999999865
No 351
>KOG1230 consensus Protein containing repeated kelch motifs [General function prediction only]
Probab=55.66 E-value=1.9e+02 Score=27.57 Aligned_cols=137 Identities=10% Similarity=0.025 Sum_probs=69.5
Q ss_pred CCeEEEEe---cCCEEEEEEcCCCeeEEeeccCC-Cccc--CeEECCCCCEEEEeC------------CCcEEEEc-CCC
Q 018474 63 KGALYTAT---RDGWVKYFILHNETLVNWKHIDS-QSLL--GLTTTKDGGVILCDN------------EKGLLKVT-EEG 123 (355)
Q Consensus 63 ~g~l~~~~---~~g~i~~~~~~~g~~~~~~~~~~-~p~~--gl~~d~~g~L~v~~~------------~~gl~~~~-~~g 123 (355)
+|-+|-+. ..+.+|+++.++.+++.+..... .|.+ .++.-+.|.||+-.. ...++.++ ++.
T Consensus 85 GGEf~ngqkT~vYndLy~Yn~k~~eWkk~~spn~P~pRsshq~va~~s~~l~~fGGEfaSPnq~qF~HYkD~W~fd~~tr 164 (521)
T KOG1230|consen 85 GGEFYNGQKTHVYNDLYSYNTKKNEWKKVVSPNAPPPRSSHQAVAVPSNILWLFGGEFASPNQEQFHHYKDLWLFDLKTR 164 (521)
T ss_pred cceeecceeEEEeeeeeEEeccccceeEeccCCCcCCCccceeEEeccCeEEEeccccCCcchhhhhhhhheeeeeeccc
Confidence 55566543 24679999998889988754322 1210 344446788888431 12345555 333
Q ss_pred -eEEEcCC--c--CCcccEEEccCCcEEEEeCCCCCCCccccccccccCCCCeEEEEeCCCCeEEEeecccccc-----c
Q 018474 124 -VEAIVPD--A--SFTNDVIAASDGTLYFTVASTKYTPTDFYKDMAEGKPYGQLRKYDPKLKETTVLHEGFYFA-----N 193 (355)
Q Consensus 124 -~~~~~~~--~--~~~~~l~~d~dG~ly~~d~~~~~~~~~~~~~~~~~~~~g~l~~~dp~~~~~~~~~~~~~~p-----n 193 (355)
.+++... + ..-+.|++-.+--|.|+.-... .+++ ...+-||.||.++-++..+......| .
T Consensus 165 kweql~~~g~PS~RSGHRMvawK~~lilFGGFhd~--nr~y-------~YyNDvy~FdLdtykW~Klepsga~PtpRSGc 235 (521)
T KOG1230|consen 165 KWEQLEFGGGPSPRSGHRMVAWKRQLILFGGFHDS--NRDY-------IYYNDVYAFDLDTYKWSKLEPSGAGPTPRSGC 235 (521)
T ss_pred hheeeccCCCCCCCccceeEEeeeeEEEEcceecC--CCce-------EEeeeeEEEeccceeeeeccCCCCCCCCCCcc
Confidence 3433221 1 2222244433333444321100 0000 01235889998888887765433233 2
Q ss_pred cEEEeCCCCEEEEEe
Q 018474 194 GIALSKNEDFVVVCE 208 (355)
Q Consensus 194 gi~~~~dg~~l~v~~ 208 (355)
.+..+|+|..+++..
T Consensus 236 q~~vtpqg~i~vyGG 250 (521)
T KOG1230|consen 236 QFSVTPQGGIVVYGG 250 (521)
T ss_pred eEEecCCCcEEEEcc
Confidence 356778887555544
No 352
>PF08138 Sex_peptide: Sex peptide (SP) family; InterPro: IPR012608 This family consists of Sex Peptides (SP) that are found in Drosophila. On mating, Drosophila females decreases her remating rate and increases her egg-laying rate due, in part, to the transfer of SP from the male to the female. SP are found in seminal fluids transferred from the male to the female during mating. The male seminal fluid proteins are referred to as accessory gland proteins (Acps). The SP is one of the most interesting Acps and plays an important role in reproduction [].; GO: 0005179 hormone activity, 0046008 regulation of female receptivity, post-mating, 0005576 extracellular region; PDB: 2LAQ_A.
Probab=55.09 E-value=7.2 Score=24.96 Aligned_cols=38 Identities=16% Similarity=0.202 Sum_probs=4.7
Q ss_pred CChhhHHHHHHHHHHHHHhccCCCccccccCCCCCCCc
Q 018474 1 MAPKSFLLACLLAFTVQIFFSLSVSSLASLLSISKESS 38 (355)
Q Consensus 1 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 38 (355)
|+...++++.++++.+|.-+..|+.--..++.+|.+++
T Consensus 1 Mk~p~~llllvlllGla~s~~wp~~~r~~~~~i~sp~~ 38 (56)
T PF08138_consen 1 MKTPIFLLLLVLLLGLAQSWEWPWQRRTTKFPIPSPND 38 (56)
T ss_dssp ---------------------S---S---S-SSSS-ST
T ss_pred CcchHHHHHHHHHHHHHhcccccccCCCCCCCCCCCCc
Confidence 66676776666666666666666665544455554443
No 353
>smart00284 OLF Olfactomedin-like domains.
Probab=55.06 E-value=1.5e+02 Score=26.24 Aligned_cols=146 Identities=16% Similarity=0.182 Sum_probs=74.9
Q ss_pred CCCCceEEEeeCCCeEEEEe-cCCEEEEEEcCCCeeEEee--ccC---C-Cc--------ccCeEECCCCCEEEE---eC
Q 018474 51 VNHPEDVSVVVSKGALYTAT-RDGWVKYFILHNETLVNWK--HID---S-QS--------LLGLTTTKDGGVILC---DN 112 (355)
Q Consensus 51 ~~~p~~i~~d~~~g~l~~~~-~~g~i~~~~~~~g~~~~~~--~~~---~-~p--------~~gl~~d~~g~L~v~---~~ 112 (355)
..+.-.++. +|.||.-. ....|.|+|..++...... +.. + .+ . .++.|++| |||- ..
T Consensus 74 ~~GtG~VVY---ngslYY~~~~s~~iiKydL~t~~v~~~~~Lp~a~y~~~~~Y~~~~~sdi-DlAvDE~G-LWvIYat~~ 148 (255)
T smart00284 74 GQGTGVVVY---NGSLYFNKFNSHDICRFDLTTETYQKEPLLNGAGYNNRFPYAWGGFSDI-DLAVDENG-LWVIYATEQ 148 (255)
T ss_pred cccccEEEE---CceEEEEecCCccEEEEECCCCcEEEEEecCccccccccccccCCCccE-EEEEcCCc-eEEEEeccC
Confidence 344444444 45666633 3567999999888654221 111 0 11 2 46777554 6653 33
Q ss_pred CCcEE---EEcCCC---eEEEcCCc---CCcccEEEccCCcEEEEeCCCCCCCccccccccccCCCCe-EEEEeCCCCeE
Q 018474 113 EKGLL---KVTEEG---VEAIVPDA---SFTNDVIAASDGTLYFTVASTKYTPTDFYKDMAEGKPYGQ-LRKYDPKLKET 182 (355)
Q Consensus 113 ~~gl~---~~~~~g---~~~~~~~~---~~~~~l~~d~dG~ly~~d~~~~~~~~~~~~~~~~~~~~g~-l~~~dp~~~~~ 182 (355)
..|.+ ++++.- .+...... ..-|.+.+- |.||++++.. ..... .+.||..+++.
T Consensus 149 ~~g~ivvSkLnp~tL~ve~tW~T~~~k~sa~naFmvC--GvLY~~~s~~--------------~~~~~I~yayDt~t~~~ 212 (255)
T smart00284 149 NAGKIVISKLNPATLTIENTWITTYNKRSASNAFMIC--GILYVTRSLG--------------SKGEKVFYAYDTNTGKE 212 (255)
T ss_pred CCCCEEEEeeCcccceEEEEEEcCCCcccccccEEEe--eEEEEEccCC--------------CCCcEEEEEEECCCCcc
Confidence 33533 555422 23333222 222333332 7899987531 11223 46789877654
Q ss_pred EEee----ccccccccEEEeCCCCEEEEEeCCCCeEEEEEe
Q 018474 183 TVLH----EGFYFANGIALSKNEDFVVVCESWKFRCRRYWL 219 (355)
Q Consensus 183 ~~~~----~~~~~pngi~~~~dg~~l~v~~~~~~~i~~~~~ 219 (355)
.... .....-..+...|..+.||.=+. +.+..|++
T Consensus 213 ~~~~i~f~n~y~~~s~l~YNP~d~~LY~wdn--g~~l~Y~v 251 (255)
T smart00284 213 GHLDIPFENMYEYISMLDYNPNDRKLYAWNN--GHLVHYDI 251 (255)
T ss_pred ceeeeeeccccccceeceeCCCCCeEEEEeC--CeEEEEEE
Confidence 3321 11122234677787777888653 56666765
No 354
>KOG1063 consensus RNA polymerase II elongator complex, subunit ELP2, WD repeat superfamily [Chromatin structure and dynamics; Transcription]
Probab=54.78 E-value=2.5e+02 Score=28.58 Aligned_cols=62 Identities=16% Similarity=0.205 Sum_probs=35.7
Q ss_pred ccEEEeCCCCEEEEEeCCCCeEEEEEeCCCCCcceeEecccCCCCcCceEECCCCCEEEEeec
Q 018474 193 NGIALSKNEDFVVVCESWKFRCRRYWLKGDRAGILDAFIENLPGGPDNINLAPDGSFWIGLIK 255 (355)
Q Consensus 193 ngi~~~~dg~~l~v~~~~~~~i~~~~~~~~~~~~~~~~~~~~~g~p~~i~~d~~G~lwv~~~~ 255 (355)
-|..++++++ .+++....++.+.+.-..+..-..+.++.+...--.++.-|+.|.++++...
T Consensus 320 ~g~lw~~n~~-~ii~~g~~Gg~hlWkt~d~~~w~~~~~iSGH~~~V~dv~W~psGeflLsvs~ 381 (764)
T KOG1063|consen 320 WGGLWSPNSN-VIIAHGRTGGFHLWKTKDKTFWTQEPVISGHVDGVKDVDWDPSGEFLLSVSL 381 (764)
T ss_pred eeEEEcCCCC-EEEEecccCcEEEEeccCccceeeccccccccccceeeeecCCCCEEEEecc
Confidence 4567888887 6677766666666652222222223333222222345678899999888765
No 355
>KOG0269 consensus WD40 repeat-containing protein [Function unknown]
Probab=54.68 E-value=1.3e+02 Score=30.75 Aligned_cols=97 Identities=13% Similarity=0.280 Sum_probs=53.6
Q ss_pred CeEEEEecCCEEEEEEcCC---Ce-eEEeeccCCCcccCeEECC-CCCEEEEeCCCcEEEE-c-C-CC-eEEEcCCcCCc
Q 018474 64 GALYTATRDGWVKYFILHN---ET-LVNWKHIDSQSLLGLTTTK-DGGVILCDNEKGLLKV-T-E-EG-VEAIVPDASFT 134 (355)
Q Consensus 64 g~l~~~~~~g~i~~~~~~~---g~-~~~~~~~~~~p~~gl~~d~-~g~L~v~~~~~gl~~~-~-~-~g-~~~~~~~~~~~ 134 (355)
+.+.++..+|.|..+|... .+ ...|.......+ .+.+.+ .-++.+....+|.++. | + .. ..++......+
T Consensus 101 NlIAT~s~nG~i~vWdlnk~~rnk~l~~f~EH~Rs~~-~ldfh~tep~iliSGSQDg~vK~~DlR~~~S~~t~~~nSESi 179 (839)
T KOG0269|consen 101 NLIATCSTNGVISVWDLNKSIRNKLLTVFNEHERSAN-KLDFHSTEPNILISGSQDGTVKCWDLRSKKSKSTFRSNSESI 179 (839)
T ss_pred hhheeecCCCcEEEEecCccccchhhhHhhhhcccee-eeeeccCCccEEEecCCCceEEEEeeecccccccccccchhh
Confidence 3445566788888888732 11 112211122344 555543 3467776666675544 4 3 22 33333333689
Q ss_pred ccEEEccC-CcEEEEeCCCCCCCccccccccccCCCCeEEEEeCC
Q 018474 135 NDVIAASD-GTLYFTVASTKYTPTDFYKDMAEGKPYGQLRKYDPK 178 (355)
Q Consensus 135 ~~l~~d~d-G~ly~~d~~~~~~~~~~~~~~~~~~~~g~l~~~dp~ 178 (355)
+|+.+.|. ++.|++... .|.|..||..
T Consensus 180 RDV~fsp~~~~~F~s~~d-----------------sG~lqlWDlR 207 (839)
T KOG0269|consen 180 RDVKFSPGYGNKFASIHD-----------------SGYLQLWDLR 207 (839)
T ss_pred hceeeccCCCceEEEecC-----------------CceEEEeecc
Confidence 99999974 566665433 4667778753
No 356
>KOG0264 consensus Nucleosome remodeling factor, subunit CAF1/NURF55/MSI1 [Chromatin structure and dynamics]
Probab=54.50 E-value=2e+02 Score=27.38 Aligned_cols=101 Identities=11% Similarity=0.026 Sum_probs=57.1
Q ss_pred CCCCCCceEEEeeCCCeEEEEe-cCCEEEEEEcCCC--eeEEeecc-CCCcccCeEECCCCCEEEEeCC-Cc-EEEEcC-
Q 018474 49 GCVNHPEDVSVVVSKGALYTAT-RDGWVKYFILHNE--TLVNWKHI-DSQSLLGLTTTKDGGVILCDNE-KG-LLKVTE- 121 (355)
Q Consensus 49 ~~~~~p~~i~~d~~~g~l~~~~-~~g~i~~~~~~~g--~~~~~~~~-~~~p~~gl~~d~~g~L~v~~~~-~g-l~~~~~- 121 (355)
+.-..-|.+++.+....+|.+. .++.+..+|.+++ +....... .+..+ ++++.+-+...+|+.. .+ +..+|.
T Consensus 225 ~h~~~VeDV~~h~~h~~lF~sv~dd~~L~iwD~R~~~~~~~~~~~ah~~~vn-~~~fnp~~~~ilAT~S~D~tV~LwDlR 303 (422)
T KOG0264|consen 225 GHEDVVEDVAWHPLHEDLFGSVGDDGKLMIWDTRSNTSKPSHSVKAHSAEVN-CVAFNPFNEFILATGSADKTVALWDLR 303 (422)
T ss_pred cCCcceehhhccccchhhheeecCCCeEEEEEcCCCCCCCcccccccCCcee-EEEeCCCCCceEEeccCCCcEEEeech
Confidence 3334455666666666777654 4788888888753 22221111 24466 8888877665555543 34 555552
Q ss_pred --CC-eEEEcCCcCCcccEEEccCC-cEEEEeC
Q 018474 122 --EG-VEAIVPDASFTNDVIAASDG-TLYFTVA 150 (355)
Q Consensus 122 --~g-~~~~~~~~~~~~~l~~d~dG-~ly~~d~ 150 (355)
.. +..+......+..+..+|+. ++..+..
T Consensus 304 nL~~~lh~~e~H~dev~~V~WSPh~etvLASSg 336 (422)
T KOG0264|consen 304 NLNKPLHTFEGHEDEVFQVEWSPHNETVLASSG 336 (422)
T ss_pred hcccCceeccCCCcceEEEEeCCCCCceeEecc
Confidence 22 44433333567778888865 5665543
No 357
>KOG0264 consensus Nucleosome remodeling factor, subunit CAF1/NURF55/MSI1 [Chromatin structure and dynamics]
Probab=53.30 E-value=2.1e+02 Score=27.25 Aligned_cols=147 Identities=10% Similarity=0.020 Sum_probs=78.4
Q ss_pred eEEEee-CCCeEEEEecCCEEEEEEcCCCee-------EEeec-cCCCcccCeEECC-CCCEEEEeCCCc-EEEEc-CCC
Q 018474 56 DVSVVV-SKGALYTATRDGWVKYFILHNETL-------VNWKH-IDSQSLLGLTTTK-DGGVILCDNEKG-LLKVT-EEG 123 (355)
Q Consensus 56 ~i~~d~-~~g~l~~~~~~g~i~~~~~~~g~~-------~~~~~-~~~~p~~gl~~d~-~g~L~v~~~~~g-l~~~~-~~g 123 (355)
++.+.+ ..+.|..+..++.|..+|...... +.+.. ...... ..++.. ...||.+-..++ +...| ..+
T Consensus 182 glsWn~~~~g~Lls~~~d~~i~lwdi~~~~~~~~~~~p~~~~~~h~~~Ve-DV~~h~~h~~lF~sv~dd~~L~iwD~R~~ 260 (422)
T KOG0264|consen 182 GLSWNRQQEGTLLSGSDDHTICLWDINAESKEDKVVDPKTIFSGHEDVVE-DVAWHPLHEDLFGSVGDDGKLMIWDTRSN 260 (422)
T ss_pred ccccccccceeEeeccCCCcEEEEeccccccCCccccceEEeecCCccee-hhhccccchhhheeecCCCeEEEEEcCCC
Confidence 455553 346677777788888888632211 11111 111122 233322 223444433333 33444 221
Q ss_pred ----eEEEcCCcCCcccEEEccCC-cEEEEeCCCCCCCccccccccccCCCCeEEEEeCCCCeEEEe--eccccccccEE
Q 018474 124 ----VEAIVPDASFTNDVIAASDG-TLYFTVASTKYTPTDFYKDMAEGKPYGQLRKYDPKLKETTVL--HEGFYFANGIA 196 (355)
Q Consensus 124 ----~~~~~~~~~~~~~l~~d~dG-~ly~~d~~~~~~~~~~~~~~~~~~~~g~l~~~dp~~~~~~~~--~~~~~~pngi~ 196 (355)
.+.......-+|.+.+.|-+ .|..|-+. .+.|..||+.+-..... ...-..-..+.
T Consensus 261 ~~~~~~~~~ah~~~vn~~~fnp~~~~ilAT~S~-----------------D~tV~LwDlRnL~~~lh~~e~H~dev~~V~ 323 (422)
T KOG0264|consen 261 TSKPSHSVKAHSAEVNCVAFNPFNEFILATGSA-----------------DKTVALWDLRNLNKPLHTFEGHEDEVFQVE 323 (422)
T ss_pred CCCCcccccccCCceeEEEeCCCCCceEEeccC-----------------CCcEEEeechhcccCceeccCCCcceEEEE
Confidence 22222223678889999855 55555333 56788888754332211 11111234678
Q ss_pred EeCCCCEEEEEeCCCCeEEEEEeC
Q 018474 197 LSKNEDFVVVCESWKFRCRRYWLK 220 (355)
Q Consensus 197 ~~~dg~~l~v~~~~~~~i~~~~~~ 220 (355)
++|....++.+....+++.++|++
T Consensus 324 WSPh~etvLASSg~D~rl~vWDls 347 (422)
T KOG0264|consen 324 WSPHNETVLASSGTDRRLNVWDLS 347 (422)
T ss_pred eCCCCCceeEecccCCcEEEEecc
Confidence 899999888888778899999985
No 358
>KOG1034 consensus Transcriptional repressor EED/ESC/FIE, required for transcriptional silencing, WD repeat superfamily [Transcription]
Probab=53.28 E-value=47 Score=30.39 Aligned_cols=56 Identities=18% Similarity=0.143 Sum_probs=35.6
Q ss_pred ccccCCCCeEEEEeCCCCeE---EEeec--cccccccEEEeCCCCEEEEEeCCCCeEEEEEe
Q 018474 163 MAEGKPYGQLRKYDPKLKET---TVLHE--GFYFANGIALSKNEDFVVVCESWKFRCRRYWL 219 (355)
Q Consensus 163 ~~~~~~~g~l~~~dp~~~~~---~~~~~--~~~~pngi~~~~dg~~l~v~~~~~~~i~~~~~ 219 (355)
+..+...|.+|.||.+..+- +.+.. ....-.-.+++.|+. +++.......|||++.
T Consensus 322 la~gnq~g~v~vwdL~~~ep~~~ttl~~s~~~~tVRQ~sfS~dgs-~lv~vcdd~~Vwrwdr 382 (385)
T KOG1034|consen 322 LALGNQSGKVYVWDLDNNEPPKCTTLTHSKSGSTVRQTSFSRDGS-ILVLVCDDGTVWRWDR 382 (385)
T ss_pred HhhccCCCcEEEEECCCCCCccCceEEeccccceeeeeeecccCc-EEEEEeCCCcEEEEEe
Confidence 34556678899998765543 12211 122334578999998 5555566789999984
No 359
>KOG0641 consensus WD40 repeat protein [General function prediction only]
Probab=53.13 E-value=1.5e+02 Score=25.64 Aligned_cols=63 Identities=16% Similarity=0.109 Sum_probs=34.9
Q ss_pred CCCCceEEEeeCCCeEEEEecCCEEEEEE-------cCCCee-------EEe---eccCCCcccCeEECCCCCEEEEeCC
Q 018474 51 VNHPEDVSVVVSKGALYTATRDGWVKYFI-------LHNETL-------VNW---KHIDSQSLLGLTTTKDGGVILCDNE 113 (355)
Q Consensus 51 ~~~p~~i~~d~~~g~l~~~~~~g~i~~~~-------~~~g~~-------~~~---~~~~~~p~~gl~~d~~g~L~v~~~~ 113 (355)
-+.-.++++.| .|.||....+.+.+|+- +..++- ... .+..+.++ +.++.+.|.|..+..+
T Consensus 32 sqairav~fhp-~g~lyavgsnskt~ric~yp~l~~~r~~hea~~~pp~v~~kr~khhkgsiy-c~~ws~~geliatgsn 109 (350)
T KOG0641|consen 32 SQAIRAVAFHP-AGGLYAVGSNSKTFRICAYPALIDLRHAHEAAKQPPSVLCKRNKHHKGSIY-CTAWSPCGELIATGSN 109 (350)
T ss_pred hhheeeEEecC-CCceEEeccCCceEEEEccccccCcccccccccCCCeEEeeeccccCccEE-EEEecCccCeEEecCC
Confidence 46778899995 55567544444455543 222211 011 11234567 7778888888776655
Q ss_pred Cc
Q 018474 114 KG 115 (355)
Q Consensus 114 ~g 115 (355)
+-
T Consensus 110 dk 111 (350)
T KOG0641|consen 110 DK 111 (350)
T ss_pred Cc
Confidence 43
No 360
>KOG1215 consensus Low-density lipoprotein receptors containing Ca2+-binding EGF-like domains [Signal transduction mechanisms]
Probab=53.08 E-value=3.1e+02 Score=29.17 Aligned_cols=136 Identities=12% Similarity=0.153 Sum_probs=78.9
Q ss_pred CeEEC-CCCCEEEEeCCC-cEEEEcCCC---eEEEcCCcCCcccEEEcc-CCcEEEEeCCCCCCCccccccccccCCCCe
Q 018474 98 GLTTT-KDGGVILCDNEK-GLLKVTEEG---VEAIVPDASFTNDVIAAS-DGTLYFTVASTKYTPTDFYKDMAEGKPYGQ 171 (355)
Q Consensus 98 gl~~d-~~g~L~v~~~~~-gl~~~~~~g---~~~~~~~~~~~~~l~~d~-dG~ly~~d~~~~~~~~~~~~~~~~~~~~g~ 171 (355)
.+.+| .++.+|.++... .+++....+ .+......-.+.++++|. .+++|++|... ..
T Consensus 441 ~~d~d~~~~~i~~~d~~~~~i~~~~~~~~~~~~~~~~g~~~~~~lavD~~~~~~y~tDe~~-----------------~~ 503 (877)
T KOG1215|consen 441 ALDFDVLNNRIYWADLSDEKICRASQDGSSECELCGDGLCIPEGLAVDWIGDNIYWTDEGN-----------------CL 503 (877)
T ss_pred EEEEEecCCEEEEEeccCCeEeeeccCCCccceEeccCccccCcEEEEeccCCceecccCC-----------------ce
Confidence 34444 345788887653 345544333 332344446788999996 56999998761 12
Q ss_pred EEEEeCCCCeEEE-eeccccccccEEEeCCCCEEEEEeCCC-CeEEEEEeCCCCCcceeEecccCCCCcCceEECCCC-C
Q 018474 172 LRKYDPKLKETTV-LHEGFYFANGIALSKNEDFVVVCESWK-FRCRRYWLKGDRAGILDAFIENLPGGPDNINLAPDG-S 248 (355)
Q Consensus 172 l~~~dp~~~~~~~-~~~~~~~pngi~~~~dg~~l~v~~~~~-~~i~~~~~~~~~~~~~~~~~~~~~g~p~~i~~d~~G-~ 248 (355)
+.+-+.+.....+ +...+..|..++++|-...+||++.+. .+|.+-..++.. ........-..|++++.|-.. +
T Consensus 504 i~v~~~~g~~~~vl~~~~l~~~r~~~v~p~~g~~~wtd~~~~~~i~ra~~dg~~---~~~l~~~~~~~p~glt~d~~~~~ 580 (877)
T KOG1215|consen 504 IEVADLDGSSRKVLVSKDLDLPRSIAVDPEKGLMFWTDWGQPPRIERASLDGSE---RAVLVTNGILWPNGLTIDYETDR 580 (877)
T ss_pred eEEEEccCCceeEEEecCCCCccceeeccccCeeEEecCCCCchhhhhcCCCCC---ceEEEeCCccCCCcceEEeecce
Confidence 2222222222222 234456799999999999999999863 345555554432 222222223568999888544 4
Q ss_pred EEEEe
Q 018474 249 FWIGL 253 (355)
Q Consensus 249 lwv~~ 253 (355)
+|-++
T Consensus 581 ~yw~d 585 (877)
T KOG1215|consen 581 LYWAD 585 (877)
T ss_pred eEEEc
Confidence 44444
No 361
>KOG4227 consensus WD40 repeat protein [General function prediction only]
Probab=52.68 E-value=2.1e+02 Score=27.02 Aligned_cols=151 Identities=5% Similarity=-0.060 Sum_probs=76.7
Q ss_pred CCCCceEEEeeCCCeEEEEec-CCEEEEEEcCCC------eeEEeecc--CCCcccCeEECCCCC-EEEEeCCCcEEEEc
Q 018474 51 VNHPEDVSVVVSKGALYTATR-DGWVKYFILHNE------TLVNWKHI--DSQSLLGLTTTKDGG-VILCDNEKGLLKVT 120 (355)
Q Consensus 51 ~~~p~~i~~d~~~g~l~~~~~-~g~i~~~~~~~g------~~~~~~~~--~~~p~~gl~~d~~g~-L~v~~~~~gl~~~~ 120 (355)
+..-.+|.+. .++.+.++.. +-++..++...- +...+... -..+. ++++|..++ ||-+.....++.-+
T Consensus 56 ~GCiNAlqFS-~N~~~L~SGGDD~~~~~W~~de~~~~k~~KPI~~~~~~H~SNIF-~L~F~~~N~~~~SG~~~~~VI~HD 133 (609)
T KOG4227|consen 56 TGCINALQFS-HNDRFLASGGDDMHGRVWNVDELMVRKTPKPIGVMEHPHRSNIF-SLEFDLENRFLYSGERWGTVIKHD 133 (609)
T ss_pred ccccceeeec-cCCeEEeecCCcceeeeechHHHHhhcCCCCceeccCccccceE-EEEEccCCeeEecCCCcceeEeee
Confidence 4455677787 5566655433 444445544211 22222111 13467 889986665 45444333344444
Q ss_pred -CCC--eEEEcCCc--CCcccEEEccCCcEEEEeCCCCCCCccccccccccCCCCeEEEEeCCCC----eEEEeeccccc
Q 018474 121 -EEG--VEAIVPDA--SFTNDVIAASDGTLYFTVASTKYTPTDFYKDMAEGKPYGQLRKYDPKLK----ETTVLHEGFYF 191 (355)
Q Consensus 121 -~~g--~~~~~~~~--~~~~~l~~d~dG~ly~~d~~~~~~~~~~~~~~~~~~~~g~l~~~dp~~~----~~~~~~~~~~~ 191 (355)
.+. +.+..... ..+.++.+.|-.++++..+. .+.+..||.... +....+.-...
T Consensus 134 iEt~qsi~V~~~~~~~~~VY~m~~~P~DN~~~~~t~-----------------~~~V~~~D~Rd~~~~~~~~~~AN~~~~ 196 (609)
T KOG4227|consen 134 IETKQSIYVANENNNRGDVYHMDQHPTDNTLIVVTR-----------------AKLVSFIDNRDRQNPISLVLPANSGKN 196 (609)
T ss_pred cccceeeeeecccCcccceeecccCCCCceEEEEec-----------------CceEEEEeccCCCCCCceeeecCCCcc
Confidence 232 33322221 46677777776665554433 345555553221 22222222222
Q ss_pred cccEEEeCCCCEEEEEeCCCCeEEEEEeC
Q 018474 192 ANGIALSKNEDFVVVCESWKFRCRRYWLK 220 (355)
Q Consensus 192 pngi~~~~dg~~l~v~~~~~~~i~~~~~~ 220 (355)
-..+.|.|..-.|+.+...++++-.|++.
T Consensus 197 F~t~~F~P~~P~Li~~~~~~~G~~~~D~R 225 (609)
T KOG4227|consen 197 FYTAEFHPETPALILVNSETGGPNVFDRR 225 (609)
T ss_pred ceeeeecCCCceeEEeccccCCCCceeec
Confidence 33456777776677777777788888864
No 362
>KOG4328 consensus WD40 protein [Function unknown]
Probab=52.42 E-value=2.2e+02 Score=27.34 Aligned_cols=149 Identities=11% Similarity=0.149 Sum_probs=77.4
Q ss_pred CCCceEEEeeCCC-e-EEEEecCCEEEEEEcCC-C----eeEEeeccCCCcccCeEECCCC--CEEEEeCCCcEEEEcC-
Q 018474 52 NHPEDVSVVVSKG-A-LYTATRDGWVKYFILHN-E----TLVNWKHIDSQSLLGLTTTKDG--GVILCDNEKGLLKVTE- 121 (355)
Q Consensus 52 ~~p~~i~~d~~~g-~-l~~~~~~g~i~~~~~~~-g----~~~~~~~~~~~p~~gl~~d~~g--~L~v~~~~~gl~~~~~- 121 (355)
..-.+++++|... . +.+|...|.|-.+|..+ + ....+........ +|.+.+.+ ++|.+. ..|.+++..
T Consensus 187 ~Rit~l~fHPt~~~~lva~GdK~G~VG~Wn~~~~~~d~d~v~~f~~hs~~Vs-~l~F~P~n~s~i~ssS-yDGtiR~~D~ 264 (498)
T KOG4328|consen 187 RRITSLAFHPTENRKLVAVGDKGGQVGLWNFGTQEKDKDGVYLFTPHSGPVS-GLKFSPANTSQIYSSS-YDGTIRLQDF 264 (498)
T ss_pred cceEEEEecccCcceEEEEccCCCcEEEEecCCCCCccCceEEeccCCcccc-ceEecCCChhheeeec-cCceeeeeee
Confidence 3456788886554 3 44567788888888731 1 1222333333455 88887654 566665 457666642
Q ss_pred CC--eEEEcCC---cCCcccEEEcc-CCcEEEEeCCCCCCCccccccccccCCCCeEEEEeCCCCeEE--Eeeccccccc
Q 018474 122 EG--VEAIVPD---ASFTNDVIAAS-DGTLYFTVASTKYTPTDFYKDMAEGKPYGQLRKYDPKLKETT--VLHEGFYFAN 193 (355)
Q Consensus 122 ~g--~~~~~~~---~~~~~~l~~d~-dG~ly~~d~~~~~~~~~~~~~~~~~~~~g~l~~~dp~~~~~~--~~~~~~~~pn 193 (355)
++ .+.+... -....++.+.. ++.+++.+. -|.+-.+|..++..+ .+.-.-...+
T Consensus 265 ~~~i~e~v~s~~~d~~~fs~~d~~~e~~~vl~~~~------------------~G~f~~iD~R~~~s~~~~~~lh~kKI~ 326 (498)
T KOG4328|consen 265 EGNISEEVLSLDTDNIWFSSLDFSAESRSVLFGDN------------------VGNFNVIDLRTDGSEYENLRLHKKKIT 326 (498)
T ss_pred cchhhHHHhhcCccceeeeeccccCCCccEEEeec------------------ccceEEEEeecCCccchhhhhhhcccc
Confidence 33 3322221 02222333332 233444332 233344454433221 1111112467
Q ss_pred cEEEeCCCCEEEEEeCCCCeEEEEEeC
Q 018474 194 GIALSKNEDFVVVCESWKFRCRRYWLK 220 (355)
Q Consensus 194 gi~~~~dg~~l~v~~~~~~~i~~~~~~ 220 (355)
++++.|-..+++.+...++....||..
T Consensus 327 sv~~NP~~p~~laT~s~D~T~kIWD~R 353 (498)
T KOG4328|consen 327 SVALNPVCPWFLATASLDQTAKIWDLR 353 (498)
T ss_pred eeecCCCCchheeecccCcceeeeehh
Confidence 889999888777777766666667764
No 363
>PF11768 DUF3312: Protein of unknown function (DUF3312); InterPro: IPR024511 This is a eukaryotic family of uncharacterised proteins that contain WD40 repeats.
Probab=51.44 E-value=98 Score=30.53 Aligned_cols=51 Identities=18% Similarity=0.144 Sum_probs=37.9
Q ss_pred CCCeEEEEeCCCCeEEEeeccccccccEEEeCCCCEEEEEeCCCCeEEEEEeC
Q 018474 168 PYGQLRKYDPKLKETTVLHEGFYFANGIALSKNEDFVVVCESWKFRCRRYWLK 220 (355)
Q Consensus 168 ~~g~l~~~dp~~~~~~~~~~~~~~pngi~~~~dg~~l~v~~~~~~~i~~~~~~ 220 (355)
..|.+..||...+. +........|+-++++|+|..+.+++ .++.+..||..
T Consensus 279 ~DgSiiLyD~~~~~-t~~~ka~~~P~~iaWHp~gai~~V~s-~qGelQ~FD~A 329 (545)
T PF11768_consen 279 EDGSIILYDTTRGV-TLLAKAEFIPTLIAWHPDGAIFVVGS-EQGELQCFDMA 329 (545)
T ss_pred cCCeEEEEEcCCCe-eeeeeecccceEEEEcCCCcEEEEEc-CCceEEEEEee
Confidence 36789999986654 33444446699999999999665554 67899999973
No 364
>KOG4227 consensus WD40 repeat protein [General function prediction only]
Probab=51.23 E-value=2.2e+02 Score=26.87 Aligned_cols=64 Identities=9% Similarity=0.112 Sum_probs=41.0
Q ss_pred eEEEeeCCCeEEEEecCCEEEEEEcCCCeeEEee-ccC--CCcccCeEECCCCCEEEEeCCCcEE-EEc
Q 018474 56 DVSVVVSKGALYTATRDGWVKYFILHNETLVNWK-HID--SQSLLGLTTTKDGGVILCDNEKGLL-KVT 120 (355)
Q Consensus 56 ~i~~d~~~g~l~~~~~~g~i~~~~~~~g~~~~~~-~~~--~~p~~gl~~d~~g~L~v~~~~~gl~-~~~ 120 (355)
+++++..+..+|.+..++.+.+-|.++.+...+. ... +..+ +|...+-.++++.....+++ .++
T Consensus 110 ~L~F~~~N~~~~SG~~~~~VI~HDiEt~qsi~V~~~~~~~~~VY-~m~~~P~DN~~~~~t~~~~V~~~D 177 (609)
T KOG4227|consen 110 SLEFDLENRFLYSGERWGTVIKHDIETKQSIYVANENNNRGDVY-HMDQHPTDNTLIVVTRAKLVSFID 177 (609)
T ss_pred EEEEccCCeeEecCCCcceeEeeecccceeeeeecccCccccee-ecccCCCCceEEEEecCceEEEEe
Confidence 7888855666888888898888888766544333 222 3467 77777766655554444544 444
No 365
>PRK10115 protease 2; Provisional
Probab=50.71 E-value=3e+02 Score=28.36 Aligned_cols=49 Identities=6% Similarity=-0.033 Sum_probs=30.6
Q ss_pred eEEEEeCCCCeEE-EeeccccccccEEEeCCCCEEEEEeCC-----CCeEEEEEeCC
Q 018474 171 QLRKYDPKLKETT-VLHEGFYFANGIALSKNEDFVVVCESW-----KFRCRRYWLKG 221 (355)
Q Consensus 171 ~l~~~dp~~~~~~-~~~~~~~~pngi~~~~dg~~l~v~~~~-----~~~i~~~~~~~ 221 (355)
.++..|..+++.. ....+.. ..+++++|++.+|++... ...|+++++..
T Consensus 154 ~l~v~d~~tg~~l~~~i~~~~--~~~~w~~D~~~~~y~~~~~~~~~~~~v~~h~lgt 208 (686)
T PRK10115 154 GIRFRNLETGNWYPELLDNVE--PSFVWANDSWTFYYVRKHPVTLLPYQVWRHTIGT 208 (686)
T ss_pred EEEEEECCCCCCCCccccCcc--eEEEEeeCCCEEEEEEecCCCCCCCEEEEEECCC
Confidence 5778888777521 1112222 458999999988887432 24688888743
No 366
>PF13964 Kelch_6: Kelch motif
Probab=50.13 E-value=42 Score=20.83 Aligned_cols=37 Identities=22% Similarity=0.346 Sum_probs=24.0
Q ss_pred EccCCcEEEEeCCCCCCCccccccccccCCCCeEEEEeCCCCeEEEee
Q 018474 139 AASDGTLYFTVASTKYTPTDFYKDMAEGKPYGQLRKYDPKLKETTVLH 186 (355)
Q Consensus 139 ~d~dG~ly~~d~~~~~~~~~~~~~~~~~~~~g~l~~~dp~~~~~~~~~ 186 (355)
+.-+++||+....... ......+++||+++++++.+.
T Consensus 8 v~~~~~iyv~GG~~~~-----------~~~~~~v~~yd~~t~~W~~~~ 44 (50)
T PF13964_consen 8 VVVGGKIYVFGGYDNS-----------GKYSNDVERYDPETNTWEQLP 44 (50)
T ss_pred EEECCEEEEECCCCCC-----------CCccccEEEEcCCCCcEEECC
Confidence 3346788886543110 123557999999999988754
No 367
>KOG2314 consensus Translation initiation factor 3, subunit b (eIF-3b) [Translation, ribosomal structure and biogenesis]
Probab=50.01 E-value=2.7e+02 Score=27.68 Aligned_cols=80 Identities=16% Similarity=0.165 Sum_probs=47.0
Q ss_pred CeEEEEeCCCCeEEEeec-cccccccEEEeCCCCEEEEEeCC--CCeEEEEEeCCCC---CcceeEecccCCCCcCceEE
Q 018474 170 GQLRKYDPKLKETTVLHE-GFYFANGIALSKNEDFVVVCESW--KFRCRRYWLKGDR---AGILDAFIENLPGGPDNINL 243 (355)
Q Consensus 170 g~l~~~dp~~~~~~~~~~-~~~~pngi~~~~dg~~l~v~~~~--~~~i~~~~~~~~~---~~~~~~~~~~~~g~p~~i~~ 243 (355)
-.+|.+..+.++.+.+.. .-...|.+-++|.|+++.++... .+.+.-||.+-.. +...+ . ....++..
T Consensus 472 vsfY~~e~~~~~~~lVk~~dk~~~N~vfwsPkG~fvvva~l~s~~g~l~F~D~~~a~~k~~~~~e-----h-~~at~veW 545 (698)
T KOG2314|consen 472 VSFYAVETNIKKPSLVKELDKKFANTVFWSPKGRFVVVAALVSRRGDLEFYDTDYADLKDTASPE-----H-FAATEVEW 545 (698)
T ss_pred eeEEEeecCCCchhhhhhhcccccceEEEcCCCcEEEEEEecccccceEEEecchhhhhhccCcc-----c-cccccceE
Confidence 355655544444443321 12567899999999988888754 5567777754211 11111 1 12355777
Q ss_pred CCCCCEEEEeec
Q 018474 244 APDGSFWIGLIK 255 (355)
Q Consensus 244 d~~G~lwv~~~~ 255 (355)
|+.|++.+++..
T Consensus 546 DPtGRYvvT~ss 557 (698)
T KOG2314|consen 546 DPTGRYVVTSSS 557 (698)
T ss_pred CCCCCEEEEeee
Confidence 888888777654
No 368
>KOG0322 consensus G-protein beta subunit-like protein GNB1L, contains WD repeats [General function prediction only]
Probab=49.46 E-value=1.9e+02 Score=25.79 Aligned_cols=69 Identities=19% Similarity=0.126 Sum_probs=42.8
Q ss_pred CCcccEEEccCCcEEEEeCCCCCCCccccccccccCCCCeEEEEeCCCCe-EEEeeccccccccEEEeCCCCEEEEEeCC
Q 018474 132 SFTNDVIAASDGTLYFTVASTKYTPTDFYKDMAEGKPYGQLRKYDPKLKE-TTVLHEGFYFANGIALSKNEDFVVVCESW 210 (355)
Q Consensus 132 ~~~~~l~~d~dG~ly~~d~~~~~~~~~~~~~~~~~~~~g~l~~~dp~~~~-~~~~~~~~~~pngi~~~~dg~~l~v~~~~ 210 (355)
..++++.+-+|+.|..|-.- .+++-.|+=++.. +.++...-..-|.++|+||-. +..+.+.
T Consensus 252 pGv~gvrIRpD~KIlATAGW-----------------D~RiRVyswrtl~pLAVLkyHsagvn~vAfspd~~-lmAaask 313 (323)
T KOG0322|consen 252 PGVSGVRIRPDGKILATAGW-----------------DHRIRVYSWRTLNPLAVLKYHSAGVNAVAFSPDCE-LMAAASK 313 (323)
T ss_pred CCccceEEccCCcEEeeccc-----------------CCcEEEEEeccCCchhhhhhhhcceeEEEeCCCCc-hhhhccC
Confidence 56888999999999876322 3344444322332 112222224568899999955 6677777
Q ss_pred CCeEEEEE
Q 018474 211 KFRCRRYW 218 (355)
Q Consensus 211 ~~~i~~~~ 218 (355)
..+|..+.
T Consensus 314 D~rISLWk 321 (323)
T KOG0322|consen 314 DARISLWK 321 (323)
T ss_pred CceEEeee
Confidence 77887665
No 369
>KOG4497 consensus Uncharacterized conserved protein WDR8, contains WD repeats [General function prediction only]
Probab=47.32 E-value=2e+02 Score=26.56 Aligned_cols=61 Identities=11% Similarity=0.128 Sum_probs=36.9
Q ss_pred CCcccEEEccCCc-EEEEeCCCCCCCccccccccccCCCCeEEEEeCCCCeEEEeeccccccccEEEeCCCCEEEEEeC
Q 018474 132 SFTNDVIAASDGT-LYFTVASTKYTPTDFYKDMAEGKPYGQLRKYDPKLKETTVLHEGFYFANGIALSKNEDFVVVCES 209 (355)
Q Consensus 132 ~~~~~l~~d~dG~-ly~~d~~~~~~~~~~~~~~~~~~~~g~l~~~dp~~~~~~~~~~~~~~pngi~~~~dg~~l~v~~~ 209 (355)
.....+..+|||+ |..+..- .-++.+|...+.+...+...-....|+++++||++.-+++.
T Consensus 92 agls~~~WSPdgrhiL~tseF-----------------~lriTVWSL~t~~~~~~~~pK~~~kg~~f~~dg~f~ai~sR 153 (447)
T KOG4497|consen 92 AGLSSISWSPDGRHILLTSEF-----------------DLRITVWSLNTQKGYLLPHPKTNVKGYAFHPDGQFCAILSR 153 (447)
T ss_pred CcceeeeECCCcceEeeeecc-----------------eeEEEEEEeccceeEEecccccCceeEEECCCCceeeeeec
Confidence 4556677888884 4444322 22455555555554444333334479999999998777764
No 370
>PF14779 BBS1: Ciliary BBSome complex subunit 1
Probab=46.38 E-value=71 Score=28.30 Aligned_cols=55 Identities=11% Similarity=0.112 Sum_probs=34.3
Q ss_pred CeEEEEecCCEEEEEEcCCCeeEEeeccCCCcccCe----EEC-CCCCEEEEeCCCcEEEE
Q 018474 64 GALYTATRDGWVKYFILHNETLVNWKHIDSQSLLGL----TTT-KDGGVILCDNEKGLLKV 119 (355)
Q Consensus 64 g~l~~~~~~g~i~~~~~~~g~~~~~~~~~~~p~~gl----~~d-~~g~L~v~~~~~gl~~~ 119 (355)
..|.+|+++|.|+.+|+..-....-....+-|. .| .+| -|.||.|++-.+.+|.+
T Consensus 196 scLViGTE~~~i~iLd~~af~il~~~~lpsvPv-~i~~~G~~devdyRI~Va~Rdg~iy~i 255 (257)
T PF14779_consen 196 SCLVIGTESGEIYILDPQAFTILKQVQLPSVPV-FISVSGQYDEVDYRIVVACRDGKIYTI 255 (257)
T ss_pred ceEEEEecCCeEEEECchhheeEEEEecCCCce-EEEEEeeeeccceEEEEEeCCCEEEEE
Confidence 468899999999999984433322222233332 22 234 67889998866666654
No 371
>KOG2395 consensus Protein involved in vacuole import and degradation [Intracellular trafficking, secretion, and vesicular transport]
Probab=46.17 E-value=90 Score=30.63 Aligned_cols=82 Identities=12% Similarity=0.095 Sum_probs=51.7
Q ss_pred EEEEecCCEEEEEEcC-CCe----e---EEeeccCCCcccCeEECCCCCEEEEeCCCcEEEEcCCC--eE-EEcCCcCCc
Q 018474 66 LYTATRDGWVKYFILH-NET----L---VNWKHIDSQSLLGLTTTKDGGVILCDNEKGLLKVTEEG--VE-AIVPDASFT 134 (355)
Q Consensus 66 l~~~~~~g~i~~~~~~-~g~----~---~~~~~~~~~p~~gl~~d~~g~L~v~~~~~gl~~~~~~g--~~-~~~~~~~~~ 134 (355)
-++|..+.+|+|+||. ++. + +.|.. .+.-. +++...+|.+.|+.-.+-|-.|+..+ .+ .++.-...+
T Consensus 397 TlvGLs~n~vfriDpRv~~~~kl~~~q~kqy~~-k~nFs-c~aTT~sG~IvvgS~~GdIRLYdri~~~AKTAlPgLG~~I 474 (644)
T KOG2395|consen 397 TLVGLSDNSVFRIDPRVQGKNKLAVVQSKQYST-KNNFS-CFATTESGYIVVGSLKGDIRLYDRIGRRAKTALPGLGDAI 474 (644)
T ss_pred cEEeecCCceEEecccccCcceeeeeecccccc-ccccc-eeeecCCceEEEeecCCcEEeehhhhhhhhhcccccCCce
Confidence 3567778889999985 333 1 12222 23344 67777899999998665566666654 33 343333678
Q ss_pred ccEEEccCCcEEEEe
Q 018474 135 NDVIAASDGTLYFTV 149 (355)
Q Consensus 135 ~~l~~d~dG~ly~~d 149 (355)
-++.++.||.-.+++
T Consensus 475 ~hVdvtadGKwil~T 489 (644)
T KOG2395|consen 475 KHVDVTADGKWILAT 489 (644)
T ss_pred eeEEeeccCcEEEEe
Confidence 888899999655543
No 372
>KOG0649 consensus WD40 repeat protein [General function prediction only]
Probab=45.90 E-value=2.1e+02 Score=25.23 Aligned_cols=39 Identities=13% Similarity=0.107 Sum_probs=29.3
Q ss_pred CCcccEEEcc-CCcEEEEeCCCCCCCccccccccccCCCCeEEEEeCCCCeEEEeecc
Q 018474 132 SFTNDVIAAS-DGTLYFTVASTKYTPTDFYKDMAEGKPYGQLRKYDPKLKETTVLHEG 188 (355)
Q Consensus 132 ~~~~~l~~d~-dG~ly~~d~~~~~~~~~~~~~~~~~~~~g~l~~~dp~~~~~~~~~~~ 188 (355)
..+|.+-+|| .+.|+++.. .+.+|.+|.++|+++....+
T Consensus 115 PeINam~ldP~enSi~~AgG------------------D~~~y~~dlE~G~i~r~~rG 154 (325)
T KOG0649|consen 115 PEINAMWLDPSENSILFAGG------------------DGVIYQVDLEDGRIQREYRG 154 (325)
T ss_pred CccceeEeccCCCcEEEecC------------------CeEEEEEEecCCEEEEEEcC
Confidence 6789999996 467777632 45799999999998766543
No 373
>PLN02193 nitrile-specifier protein
Probab=44.41 E-value=3.1e+02 Score=26.67 Aligned_cols=52 Identities=13% Similarity=0.017 Sum_probs=28.7
Q ss_pred CeEEEEeCCCCeEEEeecccccc--c-cEEEeCCCCEEEEEeCC-----CCeEEEEEeCC
Q 018474 170 GQLRKYDPKLKETTVLHEGFYFA--N-GIALSKNEDFVVVCESW-----KFRCRRYWLKG 221 (355)
Q Consensus 170 g~l~~~dp~~~~~~~~~~~~~~p--n-gi~~~~dg~~l~v~~~~-----~~~i~~~~~~~ 221 (355)
..+++||+.+.+++.+......| . +.+....++.+|+..-. ...+.+|++..
T Consensus 244 ndv~~yD~~t~~W~~l~~~~~~P~~R~~h~~~~~~~~iYv~GG~~~~~~~~~~~~yd~~t 303 (470)
T PLN02193 244 NGFYSFDTTTNEWKLLTPVEEGPTPRSFHSMAADEENVYVFGGVSATARLKTLDSYNIVD 303 (470)
T ss_pred ccEEEEECCCCEEEEcCcCCCCCCCccceEEEEECCEEEEECCCCCCCCcceEEEEECCC
Confidence 46999999999998764321111 1 11121223357776432 23467787643
No 374
>KOG0274 consensus Cdc4 and related F-box and WD-40 proteins [General function prediction only]
Probab=44.22 E-value=3.4e+02 Score=27.07 Aligned_cols=157 Identities=17% Similarity=0.114 Sum_probs=88.5
Q ss_pred EcCCcCCcccEEEccCCcEEEEeCCCCCCCccccccccccCCCCeEEEEeCCCCeEEEeeccccccccEEEeCCCCEEEE
Q 018474 127 IVPDASFTNDVIAASDGTLYFTVASTKYTPTDFYKDMAEGKPYGQLRKYDPKLKETTVLHEGFYFANGIALSKNEDFVVV 206 (355)
Q Consensus 127 ~~~~~~~~~~l~~d~dG~ly~~d~~~~~~~~~~~~~~~~~~~~g~l~~~dp~~~~~~~~~~~~~~pngi~~~~dg~~l~v 206 (355)
+......+..+++..-+.++++.+. ...+..||-.+|+-.....+ ....+.+++.++ .+.+
T Consensus 245 l~GH~g~V~~l~~~~~~~~lvsgS~-----------------D~t~rvWd~~sg~C~~~l~g-h~stv~~~~~~~-~~~~ 305 (537)
T KOG0274|consen 245 LVGHFGGVWGLAFPSGGDKLVSGST-----------------DKTERVWDCSTGECTHSLQG-HTSSVRCLTIDP-FLLV 305 (537)
T ss_pred ccCCCCCceeEEEecCCCEEEEEec-----------------CCcEEeEecCCCcEEEEecC-CCceEEEEEccC-ceEe
Confidence 3333466777777665566666543 33566677667754433332 223344555554 4666
Q ss_pred EeCCCCeEEEEEeCCCCCcceeEecccCCCCcCceEECCCCCEEEEeecCCchhhHhhhcchhHHHHHHhccchhhcccC
Q 018474 207 CESWKFRCRRYWLKGDRAGILDAFIENLPGGPDNINLAPDGSFWIGLIKMNQTGVRAIQKCREKWELLDAYPGLISLLLP 286 (355)
Q Consensus 207 ~~~~~~~i~~~~~~~~~~~~~~~~~~~~~g~p~~i~~d~~G~lwv~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 286 (355)
+.+....|.+++++.+.. ..++. ...+...-+..+ +.+.|+....
T Consensus 306 sgs~D~tVkVW~v~n~~~--l~l~~-~h~~~V~~v~~~--~~~lvsgs~d------------------------------ 350 (537)
T KOG0274|consen 306 SGSRDNTVKVWDVTNGAC--LNLLR-GHTGPVNCVQLD--EPLLVSGSYD------------------------------ 350 (537)
T ss_pred eccCCceEEEEeccCcce--EEEec-cccccEEEEEec--CCEEEEEecC------------------------------
Confidence 667788899999864321 11221 111212334444 5555544331
Q ss_pred CCCCCceEEEEEeCCCCeEEEEEECCCCCcccceeEEEEeC-CEEEEeecCCCeEEEeeCCCC
Q 018474 287 MGSDAGARVVKVDGNDGKIIRDFNDPDATYISFVTSAAEFD-GNLYLASLQSNFIGILPLDGP 348 (355)
Q Consensus 287 ~~~~~~~~v~~~~~~~g~~~~~~~~~~g~~~~~~~~~~~~~-g~L~v~~~~~~~i~~~~~~~~ 348 (355)
+.|-..++..++.+..++.+.+ .++.+..+. ..++=|+.. ..|-.-+++..
T Consensus 351 ------~~v~VW~~~~~~cl~sl~gH~~----~V~sl~~~~~~~~~Sgs~D-~~IkvWdl~~~ 402 (537)
T KOG0274|consen 351 ------GTVKVWDPRTGKCLKSLSGHTG----RVYSLIVDSENRLLSGSLD-TTIKVWDLRTK 402 (537)
T ss_pred ------ceEEEEEhhhceeeeeecCCcc----eEEEEEecCcceEEeeeec-cceEeecCCch
Confidence 2466667657888888877665 566666666 777777774 66766666543
No 375
>PF07676 PD40: WD40-like Beta Propeller Repeat; InterPro: IPR011659 WD-40 repeats (also known as WD or beta-transducin repeats) are short ~40 amino acid motifs, often terminating in a Trp-Asp (W-D) dipeptide. WD40 repeats usually assume a 7-8 bladed beta-propeller fold, but proteins have been found with 4 to 16 repeated units, which also form a circularised beta-propeller structure. WD-repeat proteins are a large family found in all eukaryotes and are implicated in a variety of functions ranging from signal transduction and transcription regulation to cell cycle control and apoptosis. Repeated WD40 motifs act as a site for protein-protein interaction, and proteins containing WD40 repeats are known to serve as platforms for the assembly of protein complexes or mediators of transient interplay among other proteins. The specificity of the proteins is determined by the sequences outside the repeats themselves. Examples of such complexes are G proteins (beta subunit is a beta-propeller), TAFII transcription factor, and E3 ubiquitin ligase [, ]. In Arabidopsis spp., several WD40-containing proteins act as key regulators of plant-specific developmental events. This region appears to be related to the IPR001680 from INTERPRO repeat. This model is likely to miss copies within a sequence.; PDB: 2HQS_D 1C5K_A 2IVZ_A 2W8B_D 3IAX_A 1CRZ_A 1N6F_D 1N6D_C 1N6E_C 1K32_A ....
Probab=43.79 E-value=64 Score=18.71 Aligned_cols=17 Identities=12% Similarity=0.183 Sum_probs=12.0
Q ss_pred cEEEeCCCCEEEEEeCC
Q 018474 194 GIALSKNEDFVVVCESW 210 (355)
Q Consensus 194 gi~~~~dg~~l~v~~~~ 210 (355)
..+++|||+.++++...
T Consensus 13 ~p~~SpDGk~i~f~s~~ 29 (39)
T PF07676_consen 13 SPAWSPDGKYIYFTSNR 29 (39)
T ss_dssp EEEE-TTSSEEEEEEEC
T ss_pred CEEEecCCCEEEEEecC
Confidence 35789999988887644
No 376
>KOG1517 consensus Guanine nucleotide binding protein MIP1 [Cell cycle control, cell division, chromosome partitioning]
Probab=43.58 E-value=4.6e+02 Score=28.47 Aligned_cols=148 Identities=14% Similarity=0.190 Sum_probs=74.1
Q ss_pred CCCeEEEEecCCEEEEEEcCCCeeEEeecc--CCCcccCeEEC-CCCCEEEEeCCCcEEEE-cC-CC-----eEEEcCCc
Q 018474 62 SKGALYTATRDGWVKYFILHNETLVNWKHI--DSQSLLGLTTT-KDGGVILCDNEKGLLKV-TE-EG-----VEAIVPDA 131 (355)
Q Consensus 62 ~~g~l~~~~~~g~i~~~~~~~g~~~~~~~~--~~~p~~gl~~d-~~g~L~v~~~~~gl~~~-~~-~g-----~~~~~~~~ 131 (355)
..|.|+++..-.-|..+|...++...=... ..-+. .|.-| ..|+++++...+|-+++ |. -. +.......
T Consensus 1176 ~~G~Ll~tGd~r~IRIWDa~~E~~~~diP~~s~t~vT-aLS~~~~~gn~i~AGfaDGsvRvyD~R~a~~ds~v~~~R~h~ 1254 (1387)
T KOG1517|consen 1176 QSGHLLVTGDVRSIRIWDAHKEQVVADIPYGSSTLVT-ALSADLVHGNIIAAGFADGSVRVYDRRMAPPDSLVCVYREHN 1254 (1387)
T ss_pred hCCeEEecCCeeEEEEEecccceeEeecccCCCccce-eecccccCCceEEEeecCCceEEeecccCCccccceeecccC
Confidence 467788765444556666644432211111 11233 55544 34789988877775554 42 11 11111111
Q ss_pred --CCcccEEEccCCcEEEEeCCCCCCCccccccccccCCCCeEEEEeCCCCeEEEeecc-c---cc--cccEEEeCCCCE
Q 018474 132 --SFTNDVIAASDGTLYFTVASTKYTPTDFYKDMAEGKPYGQLRKYDPKLKETTVLHEG-F---YF--ANGIALSKNEDF 203 (355)
Q Consensus 132 --~~~~~l~~d~dG~ly~~d~~~~~~~~~~~~~~~~~~~~g~l~~~dp~~~~~~~~~~~-~---~~--pngi~~~~dg~~ 203 (355)
..+.++.+-++|-- ++..+...|.+..+|+.....+.+.+. . .. -..+.++++..
T Consensus 1255 ~~~~Iv~~slq~~G~~----------------elvSgs~~G~I~~~DlR~~~~e~~~~iv~~~~yGs~lTal~VH~hap- 1317 (1387)
T KOG1517|consen 1255 DVEPIVHLSLQRQGLG----------------ELVSGSQDGDIQLLDLRMSSKETFLTIVAHWEYGSALTALTVHEHAP- 1317 (1387)
T ss_pred CcccceeEEeecCCCc----------------ceeeeccCCeEEEEecccCcccccceeeeccccCccceeeeeccCCC-
Confidence 11444444443311 233334467788888765322222111 1 01 23466777766
Q ss_pred EEEEeCCCCeEEEEEeCCCCCccee
Q 018474 204 VVVCESWKFRCRRYWLKGDRAGILD 228 (355)
Q Consensus 204 l~v~~~~~~~i~~~~~~~~~~~~~~ 228 (355)
++.+.+. +.|..|+++|......+
T Consensus 1318 iiAsGs~-q~ikIy~~~G~~l~~~k 1341 (1387)
T KOG1517|consen 1318 IIASGSA-QLIKIYSLSGEQLNIIK 1341 (1387)
T ss_pred eeeecCc-ceEEEEecChhhhcccc
Confidence 6666654 77888998876554443
No 377
>KOG0269 consensus WD40 repeat-containing protein [Function unknown]
Probab=43.16 E-value=3e+02 Score=28.40 Aligned_cols=86 Identities=16% Similarity=0.207 Sum_probs=51.1
Q ss_pred CCeEEEEeCCC---C-eEEEeeccccccccEEEeCCCCEEEEEeCCCCeEEEEEeCCCCCcceeEecccCCCCcCceEEC
Q 018474 169 YGQLRKYDPKL---K-ETTVLHEGFYFANGIALSKNEDFVVVCESWKFRCRRYWLKGDRAGILDAFIENLPGGPDNINLA 244 (355)
Q Consensus 169 ~g~l~~~dp~~---~-~~~~~~~~~~~pngi~~~~dg~~l~v~~~~~~~i~~~~~~~~~~~~~~~~~~~~~g~p~~i~~d 244 (355)
.|.|..||... . ....+.+.-...+-+.+++-+-.++++.+..+.|-.||++..+ ...++..+.. -.+.+.+.
T Consensus 109 nG~i~vWdlnk~~rnk~l~~f~EH~Rs~~~ldfh~tep~iliSGSQDg~vK~~DlR~~~--S~~t~~~nSE-SiRDV~fs 185 (839)
T KOG0269|consen 109 NGVISVWDLNKSIRNKLLTVFNEHERSANKLDFHSTEPNILISGSQDGTVKCWDLRSKK--SKSTFRSNSE-SIRDVKFS 185 (839)
T ss_pred CCcEEEEecCccccchhhhHhhhhccceeeeeeccCCccEEEecCCCceEEEEeeeccc--ccccccccch-hhhceeec
Confidence 67788888743 1 1122223334567888998888899999999999999985432 1111221111 13444444
Q ss_pred C-CCCEEEEeecCC
Q 018474 245 P-DGSFWIGLIKMN 257 (355)
Q Consensus 245 ~-~G~lwv~~~~~~ 257 (355)
+ .++.+++...++
T Consensus 186 p~~~~~F~s~~dsG 199 (839)
T KOG0269|consen 186 PGYGNKFASIHDSG 199 (839)
T ss_pred cCCCceEEEecCCc
Confidence 2 466777776654
No 378
>KOG3914 consensus WD repeat protein WDR4 [Function unknown]
Probab=41.89 E-value=2.8e+02 Score=26.13 Aligned_cols=91 Identities=14% Similarity=0.177 Sum_probs=47.5
Q ss_pred CCCceEEEeeCCCeEEEEecCCEEEEEEcCC---CeeEEeeccCCCcccCeEECCCCCEEEEeCCCcEEEEc--C-CC-e
Q 018474 52 NHPEDVSVVVSKGALYTATRDGWVKYFILHN---ETLVNWKHIDSQSLLGLTTTKDGGVILCDNEKGLLKVT--E-EG-V 124 (355)
Q Consensus 52 ~~p~~i~~d~~~g~l~~~~~~g~i~~~~~~~---g~~~~~~~~~~~p~~gl~~d~~g~L~v~~~~~gl~~~~--~-~g-~ 124 (355)
..|+++.+...+...-++...|.++.++.-. +..+...-...... .+++.+|++..++....+-+|+. + .- +
T Consensus 108 ~~~~ai~~~~~~~sv~v~dkagD~~~~di~s~~~~~~~~~lGhvSml~-dVavS~D~~~IitaDRDEkIRvs~ypa~f~I 186 (390)
T KOG3914|consen 108 KRPTAISFIREDTSVLVADKAGDVYSFDILSADSGRCEPILGHVSMLL-DVAVSPDDQFIITADRDEKIRVSRYPATFVI 186 (390)
T ss_pred cCcceeeeeeccceEEEEeecCCceeeeeecccccCcchhhhhhhhhh-eeeecCCCCEEEEecCCceEEEEecCcccch
Confidence 5677777776666666666666677666422 32222211112344 67777777766554455555554 2 11 3
Q ss_pred EEEcC-CcCCcccEEEccCC
Q 018474 125 EAIVP-DASFTNDVIAASDG 143 (355)
Q Consensus 125 ~~~~~-~~~~~~~l~~d~dG 143 (355)
+.+.- ...|+..+++-++-
T Consensus 187 esfclGH~eFVS~isl~~~~ 206 (390)
T KOG3914|consen 187 ESFCLGHKEFVSTISLTDNY 206 (390)
T ss_pred hhhccccHhheeeeeeccCc
Confidence 33222 12566666655443
No 379
>KOG2315 consensus Predicted translation initiation factor related to eIF-3a [Translation, ribosomal structure and biogenesis]
Probab=41.49 E-value=3.6e+02 Score=26.64 Aligned_cols=127 Identities=10% Similarity=0.097 Sum_probs=63.6
Q ss_pred EEEEEEcCCCeeEEee-ccCCCcccCeEECCCCCEEEEeCC---CcEEEEcCCC--eEEEcCCcCCcccEEEccCCcEEE
Q 018474 74 WVKYFILHNETLVNWK-HIDSQSLLGLTTTKDGGVILCDNE---KGLLKVTEEG--VEAIVPDASFTNDVIAASDGTLYF 147 (355)
Q Consensus 74 ~i~~~~~~~g~~~~~~-~~~~~p~~gl~~d~~g~L~v~~~~---~gl~~~~~~g--~~~~~~~~~~~~~l~~d~dG~ly~ 147 (355)
.++.++.. |....+. ...+.++ ...+.++|+=+..-++ .-+-.++..+ +.-+... -=|.+.+.|.|++.+
T Consensus 252 ~Lyll~t~-g~s~~V~L~k~GPVh-dv~W~~s~~EF~VvyGfMPAkvtifnlr~~~v~df~eg--pRN~~~fnp~g~ii~ 327 (566)
T KOG2315|consen 252 TLYLLATQ-GESVSVPLLKEGPVH-DVTWSPSGREFAVVYGFMPAKVTIFNLRGKPVFDFPEG--PRNTAFFNPHGNIIL 327 (566)
T ss_pred eEEEEEec-CceEEEecCCCCCce-EEEECCCCCEEEEEEecccceEEEEcCCCCEeEeCCCC--CccceEECCCCCEEE
Confidence 45555553 3322222 2235567 7888888765443322 1234444444 2223222 235677888887554
Q ss_pred EeCCCCCCCccccccccccCCCCeEEEEeCCCCeEEEeecccc--ccccEEEeCCCCEEEEEeCC-----CCeEEEEEeC
Q 018474 148 TVASTKYTPTDFYKDMAEGKPYGQLRKYDPKLKETTVLHEGFY--FANGIALSKNEDFVVVCESW-----KFRCRRYWLK 220 (355)
Q Consensus 148 ~d~~~~~~~~~~~~~~~~~~~~g~l~~~dp~~~~~~~~~~~~~--~pngi~~~~dg~~l~v~~~~-----~~~i~~~~~~ 220 (355)
--.- |.-.|.+-.||-.+.+ .+. ... ...-..++|||.+++.+.+. ++++-.|+++
T Consensus 328 lAGF--------------GNL~G~mEvwDv~n~K--~i~-~~~a~~tt~~eW~PdGe~flTATTaPRlrvdNg~Kiwhyt 390 (566)
T KOG2315|consen 328 LAGF--------------GNLPGDMEVWDVPNRK--LIA-KFKAANTTVFEWSPDGEYFLTATTAPRLRVDNGIKIWHYT 390 (566)
T ss_pred Eeec--------------CCCCCceEEEeccchh--hcc-ccccCCceEEEEcCCCcEEEEEeccccEEecCCeEEEEec
Confidence 2211 1224566677764422 111 111 22345789999987777654 2344445555
Q ss_pred C
Q 018474 221 G 221 (355)
Q Consensus 221 ~ 221 (355)
|
T Consensus 391 G 391 (566)
T KOG2315|consen 391 G 391 (566)
T ss_pred C
Confidence 5
No 380
>KOG2111 consensus Uncharacterized conserved protein, contains WD40 repeats [Function unknown]
Probab=41.29 E-value=2.8e+02 Score=25.37 Aligned_cols=59 Identities=15% Similarity=0.234 Sum_probs=38.2
Q ss_pred eEEEE-EeCCCCeEEEEEECCCCCcccceeEEEEeCCEEEE-eecCCCeEEEeeCCCCCCCcC
Q 018474 293 ARVVK-VDGNDGKIIRDFNDPDATYISFVTSAAEFDGNLYL-ASLQSNFIGILPLDGPEPQLA 353 (355)
Q Consensus 293 ~~v~~-~~~~~g~~~~~~~~~~g~~~~~~~~~~~~~g~L~v-~~~~~~~i~~~~~~~~~~~~~ 353 (355)
|.++| ||..+|+.+..+.- |.....+..+.+..+..|+ .+.....|..+.+.....+..
T Consensus 203 GTLIRIFdt~~g~~l~E~RR--G~d~A~iy~iaFSp~~s~LavsSdKgTlHiF~l~~~~~~~~ 263 (346)
T KOG2111|consen 203 GTLIRIFDTEDGTLLQELRR--GVDRADIYCIAFSPNSSWLAVSSDKGTLHIFSLRDTENTED 263 (346)
T ss_pred cEEEEEEEcCCCcEeeeeec--CCchheEEEEEeCCCccEEEEEcCCCeEEEEEeecCCCCcc
Confidence 44555 47768887776643 5434566666666544444 466688899999888776543
No 381
>PF07569 Hira: TUP1-like enhancer of split; InterPro: IPR011494 The Hira proteins are found in a range of eukaryotes and are implicated in the assembly of repressive chromatin. These proteins also contain IPR001680 from INTERPRO.; GO: 0006355 regulation of transcription, DNA-dependent, 0005634 nucleus
Probab=40.98 E-value=2.3e+02 Score=24.32 Aligned_cols=33 Identities=15% Similarity=0.163 Sum_probs=24.2
Q ss_pred CCCceEEEeeCCCeEEEEecCCEEEEEEcCCCee
Q 018474 52 NHPEDVSVVVSKGALYTATRDGWVKYFILHNETL 85 (355)
Q Consensus 52 ~~p~~i~~d~~~g~l~~~~~~g~i~~~~~~~g~~ 85 (355)
..|-..... .+..|.+-+.+|.++.+|..+++.
T Consensus 12 gs~~~~l~~-~~~~Ll~iT~~G~l~vWnl~~~k~ 44 (219)
T PF07569_consen 12 GSPVSFLEC-NGSYLLAITSSGLLYVWNLKKGKA 44 (219)
T ss_pred CCceEEEEe-CCCEEEEEeCCCeEEEEECCCCee
Confidence 344444444 677888888999999999977764
No 382
>KOG0277 consensus Peroxisomal targeting signal type 2 receptor [Intracellular trafficking, secretion, and vesicular transport]
Probab=40.19 E-value=2.7e+02 Score=24.78 Aligned_cols=25 Identities=16% Similarity=0.096 Sum_probs=16.7
Q ss_pred EeCCCCEEEEEeCCCCeEEEEEeCC
Q 018474 197 LSKNEDFVVVCESWKFRCRRYWLKG 221 (355)
Q Consensus 197 ~~~dg~~l~v~~~~~~~i~~~~~~~ 221 (355)
+++-...++++..-.+-|..+|+..
T Consensus 198 w~ky~~~vl~Tg~vd~~vr~wDir~ 222 (311)
T KOG0277|consen 198 WSKYNHNVLATGGVDNLVRGWDIRN 222 (311)
T ss_pred ccccCCcEEEecCCCceEEEEehhh
Confidence 4444445777776677788888854
No 383
>PF05436 MF_alpha_N: Mating factor alpha precursor N-terminus; InterPro: IPR008675 This entry contains the N-terminal regions of the Saccharomyces mating factor alpha precursor protein. All proteins in this family contain one or more copies of IPR006742 from INTERPRO further toward their C terminus.; GO: 0007618 mating, 0005576 extracellular region
Probab=39.84 E-value=86 Score=22.59 Aligned_cols=15 Identities=40% Similarity=0.270 Sum_probs=11.1
Q ss_pred CChhhHHHHHHHHHH
Q 018474 1 MAPKSFLLACLLAFT 15 (355)
Q Consensus 1 ~~~~~~~~~~~~~~~ 15 (355)
|++.++|.++.++..
T Consensus 1 MKf~siLsa~ala~~ 15 (86)
T PF05436_consen 1 MKFSSILSAAALASS 15 (86)
T ss_pred CchHHHHHHHHHHHH
Confidence 888888888765444
No 384
>KOG0647 consensus mRNA export protein (contains WD40 repeats) [RNA processing and modification]
Probab=39.74 E-value=3e+02 Score=25.12 Aligned_cols=182 Identities=16% Similarity=0.134 Sum_probs=88.3
Q ss_pred CCCceEEEeeCCCeEE-EEecCCEEEEEEcCC-CeeEEee--ccCCCcccCeEECCCCC-EEEEeCCCcEEEEc-CCC-e
Q 018474 52 NHPEDVSVVVSKGALY-TATRDGWVKYFILHN-ETLVNWK--HIDSQSLLGLTTTKDGG-VILCDNEKGLLKVT-EEG-V 124 (355)
Q Consensus 52 ~~p~~i~~d~~~g~l~-~~~~~g~i~~~~~~~-g~~~~~~--~~~~~p~~gl~~d~~g~-L~v~~~~~gl~~~~-~~g-~ 124 (355)
..-.+|++.|....+. .++-||.|..++... |....-. ...+.+. .+++..+|. +|.+...+.+-.+| ..+ +
T Consensus 28 DsIS~l~FSP~~~~~~~A~SWD~tVR~wevq~~g~~~~ka~~~~~~PvL-~v~WsddgskVf~g~~Dk~~k~wDL~S~Q~ 106 (347)
T KOG0647|consen 28 DSISALAFSPQADNLLAAGSWDGTVRIWEVQNSGQLVPKAQQSHDGPVL-DVCWSDDGSKVFSGGCDKQAKLWDLASGQV 106 (347)
T ss_pred cchheeEeccccCceEEecccCCceEEEEEecCCcccchhhhccCCCeE-EEEEccCCceEEeeccCCceEEEEccCCCe
Confidence 3445677776566666 455689888887643 4443211 1234466 888888886 66666665566666 466 5
Q ss_pred EEEcCCcCCcccEEEccCC--cEEEEeCCCCCCCccccccccccCCCCeEEEEeCCCCeEEEeeccccccc-cEEEeCCC
Q 018474 125 EAIVPDASFTNDVIAASDG--TLYFTVASTKYTPTDFYKDMAEGKPYGQLRKYDPKLKETTVLHEGFYFAN-GIALSKNE 201 (355)
Q Consensus 125 ~~~~~~~~~~~~l~~d~dG--~ly~~d~~~~~~~~~~~~~~~~~~~~g~l~~~dp~~~~~~~~~~~~~~pn-gi~~~~dg 201 (355)
..+.....-+..+-.-+.. .+.+| +.+.-.|-.||+..... +. .+..|. --+.+-..
T Consensus 107 ~~v~~Hd~pvkt~~wv~~~~~~cl~T-----------------GSWDKTlKfWD~R~~~p--v~-t~~LPeRvYa~Dv~~ 166 (347)
T KOG0647|consen 107 SQVAAHDAPVKTCHWVPGMNYQCLVT-----------------GSWDKTLKFWDTRSSNP--VA-TLQLPERVYAADVLY 166 (347)
T ss_pred eeeeecccceeEEEEecCCCcceeEe-----------------cccccceeecccCCCCe--ee-eeeccceeeehhccC
Confidence 5554432223333222211 12232 23344566667643221 11 111121 11333333
Q ss_pred CEEEEEeCCCCeEEEEEeCCCCCcceeEecccCCCCcCce--EECCCCCEEEEeecCC
Q 018474 202 DFVVVCESWKFRCRRYWLKGDRAGILDAFIENLPGGPDNI--NLAPDGSFWIGLIKMN 257 (355)
Q Consensus 202 ~~l~v~~~~~~~i~~~~~~~~~~~~~~~~~~~~~g~p~~i--~~d~~G~lwv~~~~~~ 257 (355)
..+.+ .+....|..|++++......+ ....+.-.-+-+ ..|.+| +-+|...+|
T Consensus 167 pm~vV-ata~r~i~vynL~n~~te~k~-~~SpLk~Q~R~va~f~d~~~-~alGsiEGr 221 (347)
T KOG0647|consen 167 PMAVV-ATAERHIAVYNLENPPTEFKR-IESPLKWQTRCVACFQDKDG-FALGSIEGR 221 (347)
T ss_pred ceeEE-EecCCcEEEEEcCCCcchhhh-hcCcccceeeEEEEEecCCc-eEeeeecce
Confidence 33444 455678999999654321111 111111122333 356666 466666544
No 385
>PF14339 DUF4394: Domain of unknown function (DUF4394)
Probab=39.63 E-value=2.6e+02 Score=24.46 Aligned_cols=68 Identities=15% Similarity=0.148 Sum_probs=42.4
Q ss_pred CeEEC-CCCCEEEEeCCCcEEEEcC-CC-eEEEcC-Cc-----CCcccEEEccC-CcEEEEeCCCCCCCccccccccccC
Q 018474 98 GLTTT-KDGGVILCDNEKGLLKVTE-EG-VEAIVP-DA-----SFTNDVIAASD-GTLYFTVASTKYTPTDFYKDMAEGK 167 (355)
Q Consensus 98 gl~~d-~~g~L~v~~~~~gl~~~~~-~g-~~~~~~-~~-----~~~~~l~~d~d-G~ly~~d~~~~~~~~~~~~~~~~~~ 167 (355)
||.+- .+|+||-....++||.+++ +| .+.+.. .. ....++.+.|- ++|.+-..
T Consensus 31 GID~Rpa~G~LYgl~~~g~lYtIn~~tG~aT~vg~s~~~~al~g~~~gvDFNP~aDRlRvvs~----------------- 93 (236)
T PF14339_consen 31 GIDFRPANGQLYGLGSTGRLYTINPATGAATPVGASPLTVALSGTAFGVDFNPAADRLRVVSN----------------- 93 (236)
T ss_pred EEEeecCCCCEEEEeCCCcEEEEECCCCeEEEeecccccccccCceEEEecCcccCcEEEEcc-----------------
Confidence 55543 4789998877788999995 78 665521 11 22444555552 45555421
Q ss_pred CCCeEEEEeCCCCeEE
Q 018474 168 PYGQLRKYDPKLKETT 183 (355)
Q Consensus 168 ~~g~l~~~dp~~~~~~ 183 (355)
.|.-+|++|+++.+.
T Consensus 94 -~GqNlR~npdtGav~ 108 (236)
T PF14339_consen 94 -TGQNLRLNPDTGAVT 108 (236)
T ss_pred -CCcEEEECCCCCCce
Confidence 456788888888743
No 386
>PF11857 DUF3377: Domain of unknown function (DUF3377); InterPro: IPR021805 This domain is functionally uncharacterised and found at the C terminus of peptidases belonging to MEROPS peptidase family M10A, membrane-type matrix metallopeptidases (clan MA). ; GO: 0004222 metalloendopeptidase activity
Probab=39.04 E-value=36 Score=23.64 Aligned_cols=23 Identities=26% Similarity=0.381 Sum_probs=17.8
Q ss_pred hhHHHHHHHHHHHHHhccCCCcc
Q 018474 4 KSFLLACLLAFTVQIFFSLSVSS 26 (355)
Q Consensus 4 ~~~~~~~~~~~~~~~~~~~~~~~ 26 (355)
+-+|++||+.++|+++++.-..+
T Consensus 37 Pl~L~LCiLvl~yai~~fkrkGt 59 (74)
T PF11857_consen 37 PLVLLLCILVLIYAIFQFKRKGT 59 (74)
T ss_pred HHHHHHHHHHHHHHhheeeecCC
Confidence 45889999999999988764443
No 387
>PF15390 DUF4613: Domain of unknown function (DUF4613)
Probab=38.44 E-value=2.7e+02 Score=27.94 Aligned_cols=69 Identities=16% Similarity=0.113 Sum_probs=47.2
Q ss_pred eccccccccEEEeCCCCEEEEEeCCCCeEEEEEeCCCCCcceeEe-cccCCCCcCceEECCCCCEEEEeec
Q 018474 186 HEGFYFANGIALSKNEDFVVVCESWKFRCRRYWLKGDRAGILDAF-IENLPGGPDNINLAPDGSFWIGLIK 255 (355)
Q Consensus 186 ~~~~~~pngi~~~~dg~~l~v~~~~~~~i~~~~~~~~~~~~~~~~-~~~~~g~p~~i~~d~~G~lwv~~~~ 255 (355)
..++-.|+-|||++....+-|+.-..+-|..|.+.....-+.+.+ . .....|.|+++-.|..+.+--+.
T Consensus 335 IPGILvPDliAfn~kaq~VAVASNTcn~ilVYSv~~s~mPniQqIqL-e~~ERPKGiCFltdklLLilVGk 404 (671)
T PF15390_consen 335 IPGILVPDLIAFNPKAQVVAVASNTCNIILVYSVTPSSMPNIQQIQL-ESNERPKGICFLTDKLLLILVGK 404 (671)
T ss_pred cccccccceeeeCCcCCEEEEEecCCcEEEEEEeccccCCCeeEEEc-ccCCCCceeeEccCCeEEEEecc
Confidence 456778999999999998888887888899999854322222221 2 22246999998777755444433
No 388
>KOG1645 consensus RING-finger-containing E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=37.32 E-value=2.2e+02 Score=26.93 Aligned_cols=73 Identities=11% Similarity=0.003 Sum_probs=45.8
Q ss_pred cCCcccEEEccCCc--EEEEeCCCCCCCccccccccccCCCCeEEEEeCCCCeEEEeeccccccccEEEeCCCCEEEEEe
Q 018474 131 ASFTNDVIAASDGT--LYFTVASTKYTPTDFYKDMAEGKPYGQLRKYDPKLKETTVLHEGFYFANGIALSKNEDFVVVCE 208 (355)
Q Consensus 131 ~~~~~~l~~d~dG~--ly~~d~~~~~~~~~~~~~~~~~~~~g~l~~~dp~~~~~~~~~~~~~~pngi~~~~dg~~l~v~~ 208 (355)
..++.+++++|..+ +-++.. ...+-.+|..+............+-..+++.|+.+.+++.
T Consensus 193 g~~IrdlafSp~~~GLl~~asl------------------~nkiki~dlet~~~vssy~a~~~~wSC~wDlde~h~IYaG 254 (463)
T KOG1645|consen 193 GSFIRDLAFSPFNEGLLGLASL------------------GNKIKIMDLETSCVVSSYIAYNQIWSCCWDLDERHVIYAG 254 (463)
T ss_pred chhhhhhccCccccceeeeecc------------------CceEEEEecccceeeeheeccCCceeeeeccCCcceeEEe
Confidence 37888888887543 333221 2234455554443322222234566789999988888888
Q ss_pred CCCCeEEEEEeCC
Q 018474 209 SWKFRCRRYWLKG 221 (355)
Q Consensus 209 ~~~~~i~~~~~~~ 221 (355)
..++.|+.||.+.
T Consensus 255 l~nG~VlvyD~R~ 267 (463)
T KOG1645|consen 255 LQNGMVLVYDMRQ 267 (463)
T ss_pred ccCceEEEEEccC
Confidence 8899999999854
No 389
>KOG0642 consensus Cell-cycle nuclear protein, contains WD-40 repeats [Cell cycle control, cell division, chromosome partitioning]
Probab=37.28 E-value=3.7e+02 Score=26.59 Aligned_cols=37 Identities=19% Similarity=0.242 Sum_probs=23.2
Q ss_pred CCCCCCceEEEeeCCCeEEEEecCCEEEEEEcCCCee
Q 018474 49 GCVNHPEDVSVVVSKGALYTATRDGWVKYFILHNETL 85 (355)
Q Consensus 49 ~~~~~p~~i~~d~~~g~l~~~~~~g~i~~~~~~~g~~ 85 (355)
|....--.++......+|..++.+|.++.+++.....
T Consensus 394 Ghtdavw~l~~s~~~~~Llscs~DgTvr~w~~~~~~~ 430 (577)
T KOG0642|consen 394 GHTDAVWLLALSSTKDRLLSCSSDGTVRLWEPTEESP 430 (577)
T ss_pred ccccceeeeeecccccceeeecCCceEEeeccCCcCc
Confidence 4333333556664455677777889888888755444
No 390
>PF03178 CPSF_A: CPSF A subunit region; InterPro: IPR004871 This family includes a region that lies towards the C terminus of the cleavage and polyadenylation specificity factor (CPSF) A (160 kDa) subunit. CPSF is involved in mRNA polyadenylation and binds the AAUAAA conserved sequence in pre-mRNA. CPSF has also been found to be necessary for splicing of single-intron pre-mRNAs []. The function of the aligned region is unknown but may be involved in RNA/DNA binding.; GO: 0003676 nucleic acid binding, 0005634 nucleus; PDB: 2B5M_A 4A0K_C 4A0B_C 3I7L_A 3I8E_A 4A09_A 4A0A_A 3EI4_C 2B5L_A 3I7O_A ....
Probab=37.13 E-value=3.2e+02 Score=24.75 Aligned_cols=110 Identities=15% Similarity=0.163 Sum_probs=0.0
Q ss_pred CCCceEEEeeCCCeEEEEecCCEEEEEEcCCCe-eEEeeccCCCcccCeEEC-CCCCEEEEeCCCc--EEEEcCCC--eE
Q 018474 52 NHPEDVSVVVSKGALYTATRDGWVKYFILHNET-LVNWKHIDSQSLLGLTTT-KDGGVILCDNEKG--LLKVTEEG--VE 125 (355)
Q Consensus 52 ~~p~~i~~d~~~g~l~~~~~~g~i~~~~~~~g~-~~~~~~~~~~p~~gl~~d-~~g~L~v~~~~~g--l~~~~~~g--~~ 125 (355)
..+.+|..- ++. ++...++.|+.++....+ +........... ...+. -++.++++|..++ +++++.++ +.
T Consensus 89 g~V~ai~~~--~~~-lv~~~g~~l~v~~l~~~~~l~~~~~~~~~~~-i~sl~~~~~~I~vgD~~~sv~~~~~~~~~~~l~ 164 (321)
T PF03178_consen 89 GPVTAICSF--NGR-LVVAVGNKLYVYDLDNSKTLLKKAFYDSPFY-ITSLSVFKNYILVGDAMKSVSLLRYDEENNKLI 164 (321)
T ss_dssp S-EEEEEEE--TTE-EEEEETTEEEEEEEETTSSEEEEEEE-BSSS-EEEEEEETTEEEEEESSSSEEEEEEETTTE-EE
T ss_pred CcceEhhhh--CCE-EEEeecCEEEEEEccCcccchhhheecceEE-EEEEeccccEEEEEEcccCEEEEEEEccCCEEE
Q ss_pred EEcCCc--CCcccEEEccCC-cEEEEeCCCCCCCccccccccccCCCCeEEEEeCCCCe
Q 018474 126 AIVPDA--SFTNDVIAASDG-TLYFTVASTKYTPTDFYKDMAEGKPYGQLRKYDPKLKE 181 (355)
Q Consensus 126 ~~~~~~--~~~~~l~~d~dG-~ly~~d~~~~~~~~~~~~~~~~~~~~g~l~~~dp~~~~ 181 (355)
.++... .++.++.+-.++ .+.++|... +-.++++++...+
T Consensus 165 ~va~d~~~~~v~~~~~l~d~~~~i~~D~~g----------------nl~~l~~~~~~~~ 207 (321)
T PF03178_consen 165 LVARDYQPRWVTAAEFLVDEDTIIVGDKDG----------------NLFVLRYNPEIPN 207 (321)
T ss_dssp EEEEESS-BEEEEEEEE-SSSEEEEEETTS----------------EEEEEEE-SS-SS
T ss_pred EEEecCCCccEEEEEEecCCcEEEEEcCCC----------------eEEEEEECCCCcc
No 391
>PLN02153 epithiospecifier protein
Probab=35.80 E-value=3.5e+02 Score=24.79 Aligned_cols=52 Identities=8% Similarity=-0.065 Sum_probs=29.0
Q ss_pred CeEEEEeCCCCeEEEeecccccc----ccEEEeCCCCEEEEEeCC-----CCeEEEEEeCC
Q 018474 170 GQLRKYDPKLKETTVLHEGFYFA----NGIALSKNEDFVVVCESW-----KFRCRRYWLKG 221 (355)
Q Consensus 170 g~l~~~dp~~~~~~~~~~~~~~p----ngi~~~~dg~~l~v~~~~-----~~~i~~~~~~~ 221 (355)
..+++||+.+.+++........| .+.+...-++.+|+..-. .+.+++|+++.
T Consensus 50 ~~~~~yd~~~~~W~~~~~~~~~p~~~~~~~~~~~~~~~iyv~GG~~~~~~~~~v~~yd~~t 110 (341)
T PLN02153 50 KDLYVFDFNTHTWSIAPANGDVPRISCLGVRMVAVGTKLYIFGGRDEKREFSDFYSYDTVK 110 (341)
T ss_pred CcEEEEECCCCEEEEcCccCCCCCCccCceEEEEECCEEEEECCCCCCCccCcEEEEECCC
Confidence 35899999988887654322112 133322223347776421 13578888743
No 392
>PF10647 Gmad1: Lipoprotein LpqB beta-propeller domain; InterPro: IPR018910 The Gmad1 domain is found associated with IPR019606 from INTERPRO, in bacterial spore formation. It is predicted to have a beta-propeller fold and to have a passive binding role rather than a catalytic function owing to the low number of conserved hydrophilic residues.
Probab=34.89 E-value=3.2e+02 Score=24.02 Aligned_cols=144 Identities=12% Similarity=0.064 Sum_probs=70.8
Q ss_pred CcccCeEECCCCCEEEEe----CCCcEEEEcCCC-eEEEcCCcCCcccEEEccCCcEEEEeCCCCCCCccccccccccCC
Q 018474 94 QSLLGLTTTKDGGVILCD----NEKGLLKVTEEG-VEAIVPDASFTNDVIAASDGTLYFTVASTKYTPTDFYKDMAEGKP 168 (355)
Q Consensus 94 ~p~~gl~~d~~g~L~v~~----~~~gl~~~~~~g-~~~~~~~~~~~~~l~~d~dG~ly~~d~~~~~~~~~~~~~~~~~~~ 168 (355)
.+. ..++.++|+.+.+- ....|+.....+ ...+... .....-.+|++|.+|+.+... .
T Consensus 25 ~~~-s~AvS~dg~~~A~v~~~~~~~~L~~~~~~~~~~~~~~g-~~l~~PS~d~~g~~W~v~~~~---------------~ 87 (253)
T PF10647_consen 25 DVT-SPAVSPDGSRVAAVSEGDGGRSLYVGPAGGPVRPVLTG-GSLTRPSWDPDGWVWTVDDGS---------------G 87 (253)
T ss_pred ccc-ceEECCCCCeEEEEEEcCCCCEEEEEcCCCcceeeccC-CccccccccCCCCEEEEEcCC---------------C
Confidence 355 67777788744332 223455554444 3332221 234445788999999886541 0
Q ss_pred CCeEEEEeCCCCeEEEe---ecccc-ccccEEEeCCCCEEEEEeC--CCCeEEEEEeCCCCCcceeEecc------cCCC
Q 018474 169 YGQLRKYDPKLKETTVL---HEGFY-FANGIALSKNEDFVVVCES--WKFRCRRYWLKGDRAGILDAFIE------NLPG 236 (355)
Q Consensus 169 ~g~l~~~dp~~~~~~~~---~~~~~-~pngi~~~~dg~~l~v~~~--~~~~i~~~~~~~~~~~~~~~~~~------~~~g 236 (355)
...+.+ +..+++.... ..... ....+.++|||..+-+.-. ...+|+.-.+.....+....+.. ....
T Consensus 88 ~~~~~~-~~~~g~~~~~~v~~~~~~~~I~~l~vSpDG~RvA~v~~~~~~~~v~va~V~r~~~g~~~~l~~~~~~~~~~~~ 166 (253)
T PF10647_consen 88 GVRVVR-DSASGTGEPVEVDWPGLRGRITALRVSPDGTRVAVVVEDGGGGRVYVAGVVRDGDGVPRRLTGPRRVAPPLLS 166 (253)
T ss_pred ceEEEE-ecCCCcceeEEecccccCCceEEEEECCCCcEEEEEEecCCCCeEEEEEEEeCCCCCcceeccceEecccccC
Confidence 112222 2222322221 11121 3456889999986665542 24667766553211121111111 1111
Q ss_pred CcCceEECCCCCEEEEeec
Q 018474 237 GPDNINLAPDGSFWIGLIK 255 (355)
Q Consensus 237 ~p~~i~~d~~G~lwv~~~~ 255 (355)
-...+....+++|.|....
T Consensus 167 ~v~~v~W~~~~~L~V~~~~ 185 (253)
T PF10647_consen 167 DVTDVAWSDDSTLVVLGRS 185 (253)
T ss_pred cceeeeecCCCEEEEEeCC
Confidence 2344556677788887755
No 393
>KOG1310 consensus WD40 repeat protein [General function prediction only]
Probab=34.58 E-value=2.9e+02 Score=27.40 Aligned_cols=105 Identities=11% Similarity=0.126 Sum_probs=58.6
Q ss_pred eEecCCCCCCCceEEEeeCCCeEEEEecCCEEEEEEcCCCeeEEeeccC--CCcccCeEEC--CCCCEEEEeCCCcEEEE
Q 018474 44 TKLGEGCVNHPEDVSVVVSKGALYTATRDGWVKYFILHNETLVNWKHID--SQSLLGLTTT--KDGGVILCDNEKGLLKV 119 (355)
Q Consensus 44 ~~~~~~~~~~p~~i~~d~~~g~l~~~~~~g~i~~~~~~~g~~~~~~~~~--~~p~~gl~~d--~~g~L~v~~~~~gl~~~ 119 (355)
+...+|.-..-.++.|..+|..|..|+.|-++..+|+-..+..+...++ ..+. +..+- .++++.+...++..+++
T Consensus 43 E~eL~GH~GCVN~LeWn~dG~lL~SGSDD~r~ivWd~~~~KllhsI~TgHtaNIF-svKFvP~tnnriv~sgAgDk~i~l 121 (758)
T KOG1310|consen 43 EAELTGHTGCVNCLEWNADGELLASGSDDTRLIVWDPFEYKLLHSISTGHTANIF-SVKFVPYTNNRIVLSGAGDKLIKL 121 (758)
T ss_pred hhhhccccceecceeecCCCCEEeecCCcceEEeecchhcceeeeeeccccccee-EEeeeccCCCeEEEeccCcceEEE
Confidence 3344455455678999955555556677889999998665655554443 2344 44443 35677776655543333
Q ss_pred -cCC----C-e-----EEEc---CCcCCcccEEEccCC--cEEEEe
Q 018474 120 -TEE----G-V-----EAIV---PDASFTNDVIAASDG--TLYFTV 149 (355)
Q Consensus 120 -~~~----g-~-----~~~~---~~~~~~~~l~~d~dG--~ly~~d 149 (355)
|.+ | . ++.. .....+--|+..+++ .+|.+.
T Consensus 122 fdl~~~~~~~~d~~~~~~~~~~~cht~rVKria~~p~~Phtfwsas 167 (758)
T KOG1310|consen 122 FDLDSSKEGGMDHGMEETTRCWSCHTDRVKRIATAPNGPHTFWSAS 167 (758)
T ss_pred EecccccccccccCccchhhhhhhhhhhhhheecCCCCCceEEEec
Confidence 311 2 1 1110 011556667777776 466553
No 394
>KOG3621 consensus WD40 repeat-containing protein [General function prediction only]
Probab=34.35 E-value=1.8e+02 Score=29.48 Aligned_cols=67 Identities=15% Similarity=0.056 Sum_probs=40.6
Q ss_pred CCCceEEEeeCCCeEEEEecCCEEEEEEcCCCe-----eEEeeccCCCcccCeEEC-CCCCEEEEeCCCcEEEEcC
Q 018474 52 NHPEDVSVVVSKGALYTATRDGWVKYFILHNET-----LVNWKHIDSQSLLGLTTT-KDGGVILCDNEKGLLKVTE 121 (355)
Q Consensus 52 ~~p~~i~~d~~~g~l~~~~~~g~i~~~~~~~g~-----~~~~~~~~~~p~~gl~~d-~~g~L~v~~~~~gl~~~~~ 121 (355)
..-.++.|++++-.+|.|...|.|......... ...+..... + -+-+| .++.|.|++..+.++....
T Consensus 125 ~rVTal~Ws~~~~k~ysGD~~Gkv~~~~L~s~~~~~~~~q~il~~ds-~--IVQlD~~q~~LLVStl~r~~Lc~tE 197 (726)
T KOG3621|consen 125 CRVTALEWSKNGMKLYSGDSQGKVVLTELDSRQAFLSKSQEILSEDS-E--IVQLDYLQSYLLVSTLTRCILCQTE 197 (726)
T ss_pred ceEEEEEecccccEEeecCCCceEEEEEechhhhhccccceeeccCc-c--eEEeecccceehHhhhhhhheeecc
Confidence 345788999888889999999988877664411 111111111 1 13344 5677888876655555543
No 395
>PF14157 YmzC: YmzC-like protein; PDB: 3KVP_E.
Probab=33.55 E-value=65 Score=21.60 Aligned_cols=17 Identities=29% Similarity=0.346 Sum_probs=13.8
Q ss_pred CeEEEEeCCCCeEEEee
Q 018474 170 GQLRKYDPKLKETTVLH 186 (355)
Q Consensus 170 g~l~~~dp~~~~~~~~~ 186 (355)
-.+|+|||++++++...
T Consensus 41 iKIfkyd~~tNei~L~K 57 (63)
T PF14157_consen 41 IKIFKYDEDTNEITLKK 57 (63)
T ss_dssp EEEEEEETTTTEEEEEE
T ss_pred EEEEEeCCCCCeEEEEE
Confidence 37999999999987643
No 396
>PF11763 DIPSY: Cell-wall adhesin ligand-binding C-terminal; InterPro: IPR021746 The DIPSY domain is characterised by the distinctive D*I*PSY motif at the very C terminus of yeast cell-wall glycoproteins. It appears not to be conserved in any other species, however. In fungi, cell adhesion is required for flocculation, mating and virulence, and is mediated by covalently bound cell wall proteins termed adhesins. Map4, an adhesin required for mating in Schizosaccharomyces pombe, is N-glycosylated and O-glycosylated, and is an endogenous substrate for the mannosyl transferase Oma4p. Map4 has a modular structure with an N-terminal signal peptide, a serine and threonine (S/T)-rich domain that includes nine repeats of 36 amino acids (rich in serine and threonine residues, but lacking glutamines), and a C-terminal DIPSY domain with no glycosyl-phosphatidyl inositol (GPI)-anchor signal. The N-terminal S/T-rich regions, are required for cell wall attachment, but the C-terminal DIPSY domain is required for agglutination and mating in liquid and solid media [].
Probab=32.74 E-value=2.3e+02 Score=21.72 Aligned_cols=21 Identities=19% Similarity=0.414 Sum_probs=16.2
Q ss_pred CCCcCceEECCCCCEEEEeec
Q 018474 235 PGGPDNINLAPDGSFWIGLIK 255 (355)
Q Consensus 235 ~g~p~~i~~d~~G~lwv~~~~ 255 (355)
.+.|-.+.++.+|++|+.+..
T Consensus 81 ~~ep~~l~~l~dgri~~ts~~ 101 (123)
T PF11763_consen 81 FSEPLDLHTLSDGRIWFTSNE 101 (123)
T ss_pred CCCcEEEEEecCCcEEEEccc
Confidence 344666888999999999844
No 397
>KOG4497 consensus Uncharacterized conserved protein WDR8, contains WD repeats [General function prediction only]
Probab=31.72 E-value=4.2e+02 Score=24.53 Aligned_cols=76 Identities=16% Similarity=0.246 Sum_probs=44.7
Q ss_pred eEEEEeCCCCeEEEee-ccccccccEEEeCCCCEEEEEeCCCCeEEEEEeCCCCCcceeEecccCC-CCcCceEECCCCC
Q 018474 171 QLRKYDPKLKETTVLH-EGFYFANGIALSKNEDFVVVCESWKFRCRRYWLKGDRAGILDAFIENLP-GGPDNINLAPDGS 248 (355)
Q Consensus 171 ~l~~~dp~~~~~~~~~-~~~~~pngi~~~~dg~~l~v~~~~~~~i~~~~~~~~~~~~~~~~~~~~~-g~p~~i~~d~~G~ 248 (355)
.+..++...-++.--. .+...-..++.+|||+++..+....-||.++.+.+.+. .+. ..| .-..|+++.+||+
T Consensus 72 ~vqvwsl~Qpew~ckIdeg~agls~~~WSPdgrhiL~tseF~lriTVWSL~t~~~----~~~-~~pK~~~kg~~f~~dg~ 146 (447)
T KOG4497|consen 72 KVQVWSLVQPEWYCKIDEGQAGLSSISWSPDGRHILLTSEFDLRITVWSLNTQKG----YLL-PHPKTNVKGYAFHPDGQ 146 (447)
T ss_pred eEEEEEeecceeEEEeccCCCcceeeeECCCcceEeeeecceeEEEEEEecccee----EEe-cccccCceeEEECCCCc
Confidence 4555554433443222 22223345789999998888888888999998854221 111 111 1136788999997
Q ss_pred EEE
Q 018474 249 FWI 251 (355)
Q Consensus 249 lwv 251 (355)
+-.
T Consensus 147 f~a 149 (447)
T KOG4497|consen 147 FCA 149 (447)
T ss_pred eee
Confidence 643
No 398
>PF11763 DIPSY: Cell-wall adhesin ligand-binding C-terminal; InterPro: IPR021746 The DIPSY domain is characterised by the distinctive D*I*PSY motif at the very C terminus of yeast cell-wall glycoproteins. It appears not to be conserved in any other species, however. In fungi, cell adhesion is required for flocculation, mating and virulence, and is mediated by covalently bound cell wall proteins termed adhesins. Map4, an adhesin required for mating in Schizosaccharomyces pombe, is N-glycosylated and O-glycosylated, and is an endogenous substrate for the mannosyl transferase Oma4p. Map4 has a modular structure with an N-terminal signal peptide, a serine and threonine (S/T)-rich domain that includes nine repeats of 36 amino acids (rich in serine and threonine residues, but lacking glutamines), and a C-terminal DIPSY domain with no glycosyl-phosphatidyl inositol (GPI)-anchor signal. The N-terminal S/T-rich regions, are required for cell wall attachment, but the C-terminal DIPSY domain is required for agglutination and mating in liquid and solid media [].
Probab=31.58 E-value=2.4e+02 Score=21.61 Aligned_cols=89 Identities=18% Similarity=0.230 Sum_probs=43.6
Q ss_pred CCceEEEeeCCCeEEEEec---C-CEEEEEEcCCCeeEEeeccC-CCcccCeEEC-CCCC-EEEEeCCCcEEEEcCCCeE
Q 018474 53 HPEDVSVVVSKGALYTATR---D-GWVKYFILHNETLVNWKHID-SQSLLGLTTT-KDGG-VILCDNEKGLLKVTEEGVE 125 (355)
Q Consensus 53 ~p~~i~~d~~~g~l~~~~~---~-g~i~~~~~~~g~~~~~~~~~-~~p~~gl~~d-~~g~-L~v~~~~~gl~~~~~~g~~ 125 (355)
.|..+..+ .+|..+.++. . -.++.+|..-.++ .+-+ -+|.=-+..+ +.+. ..+-...+|.+++.
T Consensus 5 sPSYvy~~-sng~~~ass~g~~~g~nvFyYDsti~RI---~TCc~vrP~Y~v~~~D~~~~sf~I~kn~dG~~~Ft----- 75 (123)
T PF11763_consen 5 SPSYVYLN-SNGYMIASSNGDPEGENVFYYDSTIKRI---VTCCCVRPIYRVYHDDPNKSSFNIIKNNDGTYQFT----- 75 (123)
T ss_pred ccceEEEc-CCCcEEeeccCCcCceeeEEecCCcceE---EEecccccEEEEeecCCCcceEEEEecCCCcEEEE-----
Confidence 57777777 6777777653 1 1355566533322 2211 1221022222 2222 11222223433322
Q ss_pred EEcCCcCCcccEEEccCCcEEEEeC
Q 018474 126 AIVPDASFTNDVIAASDGTLYFTVA 150 (355)
Q Consensus 126 ~~~~~~~~~~~l~~d~dG~ly~~d~ 150 (355)
..-.....|..+.+..+|++|++..
T Consensus 76 ~~e~~~~ep~~l~~l~dgri~~ts~ 100 (123)
T PF11763_consen 76 FVESSFSEPLDLHTLSDGRIWFTSN 100 (123)
T ss_pred EcccCCCCcEEEEEecCCcEEEEcc
Confidence 1112225688899999999999863
No 399
>COG4993 Gcd Glucose dehydrogenase [Carbohydrate transport and metabolism]
Probab=31.56 E-value=5.7e+02 Score=26.00 Aligned_cols=91 Identities=16% Similarity=0.136 Sum_probs=54.7
Q ss_pred CccCceEecCCCCCCCceEEEe-------eCCCeEEEEecCCEEEEEEcCCCeeEE-eeccC-C--Ccc----cCeEE--
Q 018474 39 SMKGLTKLGEGCVNHPEDVSVV-------VSKGALYTATRDGWVKYFILHNETLVN-WKHID-S--QSL----LGLTT-- 101 (355)
Q Consensus 39 ~l~~~~~~~~~~~~~p~~i~~d-------~~~g~l~~~~~~g~i~~~~~~~g~~~~-~~~~~-~--~p~----~gl~~-- 101 (355)
+|+.+-++..|..+.|++.-.. ..++.+|+++.-++++-+|.++|+.+- +.... . .+. .++..
T Consensus 183 nL~~AWty~TGD~k~~~d~~e~t~e~tPLkvgdtlYvcTphn~v~ALDa~TGkekWkydp~~~~nv~~~~~tCrgVsy~~ 262 (773)
T COG4993 183 NLQVAWTYRTGDVKQPEDPGETTNEVTPLKVGDTLYVCTPHNRVFALDAATGKEKWKYDPNLKSNVDPQHQTCRGVSYGA 262 (773)
T ss_pred ccceeEEEecCcccCCCCcccccccccceEECCEEEEecCcceeEEeeccCCceeeecCCCCCCCcccccccccceeccc
Confidence 5556667788888888882211 147899999998899999999886431 11110 0 010 02211
Q ss_pred ----CC---CCCEEEEeCCCcEEEEcC-CC--eEEEcC
Q 018474 102 ----TK---DGGVILCDNEKGLLKVTE-EG--VEAIVP 129 (355)
Q Consensus 102 ----d~---~g~L~v~~~~~gl~~~~~-~g--~~~~~~ 129 (355)
++ ..|+|.-+....++.+|. +| +..+..
T Consensus 263 a~a~~k~pc~~rIflpt~DarlIALdA~tGkvc~~Fa~ 300 (773)
T COG4993 263 AKADAKSPCPRRIFLPTADARLIALDADTGKVCWSFAN 300 (773)
T ss_pred ccccccCCCceeEEeecCCceEEEEeCCCCcEeheecc
Confidence 11 135888777777888884 66 444444
No 400
>COG4880 Secreted protein containing C-terminal beta-propeller domain distantly related to WD-40 repeats [General function prediction only]
Probab=31.51 E-value=4.8e+02 Score=25.14 Aligned_cols=52 Identities=10% Similarity=0.156 Sum_probs=30.7
Q ss_pred eEEEEEeCCCCeEEEEEECCCCCcccceeEEEEeCCEEEEeecCC-CeEEEeeCCC
Q 018474 293 ARVVKVDGNDGKIIRDFNDPDATYISFVTSAAEFDGNLYLASLQS-NFIGILPLDG 347 (355)
Q Consensus 293 ~~v~~~~~~~g~~~~~~~~~~g~~~~~~~~~~~~~g~L~v~~~~~-~~i~~~~~~~ 347 (355)
..++.+|. ++...-.+++-.- -..+.++...++.+|+-++.. +-+.++++..
T Consensus 406 N~vYilDe-~lnvvGkltGl~~--gERIYAvRf~gdv~yiVTfrqtDPlfviDlsN 458 (603)
T COG4880 406 NAVYILDE-NLNVVGKLTGLAP--GERIYAVRFVGDVLYIVTFRQTDPLFVIDLSN 458 (603)
T ss_pred ceeEEEcC-CCcEEEEEeccCC--CceEEEEEEeCceEEEEEEeccCceEEEEcCC
Confidence 45666676 6666666654211 225666667788888877543 4455555543
No 401
>KOG1310 consensus WD40 repeat protein [General function prediction only]
Probab=31.13 E-value=3.2e+02 Score=27.18 Aligned_cols=73 Identities=15% Similarity=0.051 Sum_probs=48.3
Q ss_pred CCcccEEEccCCcEEEEeCCCCCCCccccccccccCCCCeEEEEeCCCCeEEEeeccccccc--cEEEeC-CCCEEEEEe
Q 018474 132 SFTNDVIAASDGTLYFTVASTKYTPTDFYKDMAEGKPYGQLRKYDPKLKETTVLHEGFYFAN--GIALSK-NEDFVVVCE 208 (355)
Q Consensus 132 ~~~~~l~~d~dG~ly~~d~~~~~~~~~~~~~~~~~~~~g~l~~~dp~~~~~~~~~~~~~~pn--gi~~~~-dg~~l~v~~ 208 (355)
.-+|.+....||.+.++.+. .-++..|||-..+...........| .+.|-| -++.++++.
T Consensus 51 GCVN~LeWn~dG~lL~SGSD-----------------D~r~ivWd~~~~KllhsI~TgHtaNIFsvKFvP~tnnriv~sg 113 (758)
T KOG1310|consen 51 GCVNCLEWNADGELLASGSD-----------------DTRLIVWDPFEYKLLHSISTGHTANIFSVKFVPYTNNRIVLSG 113 (758)
T ss_pred ceecceeecCCCCEEeecCC-----------------cceEEeecchhcceeeeeecccccceeEEeeeccCCCeEEEec
Confidence 67899999999988887554 4478888886554443333222233 233333 234688888
Q ss_pred CCCCeEEEEEeCC
Q 018474 209 SWKFRCRRYWLKG 221 (355)
Q Consensus 209 ~~~~~i~~~~~~~ 221 (355)
.+..-|..|+++.
T Consensus 114 AgDk~i~lfdl~~ 126 (758)
T KOG1310|consen 114 AGDKLIKLFDLDS 126 (758)
T ss_pred cCcceEEEEeccc
Confidence 8888999999863
No 402
>KOG1063 consensus RNA polymerase II elongator complex, subunit ELP2, WD repeat superfamily [Chromatin structure and dynamics; Transcription]
Probab=30.24 E-value=6.1e+02 Score=25.95 Aligned_cols=102 Identities=15% Similarity=0.103 Sum_probs=61.7
Q ss_pred CCCCCCceEEEeeCCCeEEEEecCCEEEEEEcC--CCeeEEeec---cCCCc---ccCeEECCCCCEEEEeCCCcEEEEc
Q 018474 49 GCVNHPEDVSVVVSKGALYTATRDGWVKYFILH--NETLVNWKH---IDSQS---LLGLTTTKDGGVILCDNEKGLLKVT 120 (355)
Q Consensus 49 ~~~~~p~~i~~d~~~g~l~~~~~~g~i~~~~~~--~g~~~~~~~---~~~~p---~~gl~~d~~g~L~v~~~~~gl~~~~ 120 (355)
|.-..-.++.+.|.+-.|..++.|..+..+.|. +|-+..... .++.. . |-.+.++++.+++....|=++.-
T Consensus 265 GHeDWV~sv~W~p~~~~LLSASaDksmiiW~pd~~tGiWv~~vRlGe~gg~a~GF~-g~lw~~n~~~ii~~g~~Gg~hlW 343 (764)
T KOG1063|consen 265 GHEDWVYSVWWHPEGLDLLSASADKSMIIWKPDENTGIWVDVVRLGEVGGSAGGFW-GGLWSPNSNVIIAHGRTGGFHLW 343 (764)
T ss_pred CcccceEEEEEccchhhheecccCcceEEEecCCccceEEEEEEeeccccccccee-eEEEcCCCCEEEEecccCcEEEE
Confidence 444555677777555467778888888777774 344543322 22223 3 34566788888887665433333
Q ss_pred --CC-C-eEE---EcCCcCCcccEEEccCCcEEEEeCC
Q 018474 121 --EE-G-VEA---IVPDASFTNDVIAASDGTLYFTVAS 151 (355)
Q Consensus 121 --~~-g-~~~---~~~~~~~~~~l~~d~dG~ly~~d~~ 151 (355)
++ + -.. +......+.+++.+|.|.++++.+.
T Consensus 344 kt~d~~~w~~~~~iSGH~~~V~dv~W~psGeflLsvs~ 381 (764)
T KOG1063|consen 344 KTKDKTFWTQEPVISGHVDGVKDVDWDPSGEFLLSVSL 381 (764)
T ss_pred eccCccceeeccccccccccceeeeecCCCCEEEEecc
Confidence 22 2 221 1122378999999999998888654
No 403
>TIGR02608 delta_60_rpt delta-60 repeat domain. This domain occurs in tandem repeats, as many as 13, in proteins from Bdellovibrio bacteriovorus, Azotobacter vinelandii, Geobacter sulfurreducens, Pirellula sp. 1, Myxococcus xanthus, and others, many of which are Deltaproteobacteria. The periodicity of the repeat ranges from about 57 to 61 amino acids, and a core region of about 54 is represented by this model and seed alignment.
Probab=29.80 E-value=1.1e+02 Score=19.90 Aligned_cols=45 Identities=13% Similarity=0.276 Sum_probs=29.5
Q ss_pred CceEECCCCCEEEEeecCCchhhHhhhcchhHHHHHHhccchhhcccCCCCCCceEEEEEeCCCCeEEEEEECCCC
Q 018474 239 DNINLAPDGSFWIGLIKMNQTGVRAIQKCREKWELLDAYPGLISLLLPMGSDAGARVVKVDGNDGKIIRDFNDPDA 314 (355)
Q Consensus 239 ~~i~~d~~G~lwv~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~g~~~~~~~~~~g 314 (355)
..+++.+||+|.++-..... .......|.||++ +|..-..|.. +|
T Consensus 4 ~~~~~q~DGkIlv~G~~~~~-----------------------------~~~~~~~l~Rln~-DGsLDttFg~-~G 48 (55)
T TIGR02608 4 YAVAVQSDGKILVAGYVDNS-----------------------------SGNNDFVLARLNA-DGSLDTTFGT-GG 48 (55)
T ss_pred EEEEECCCCcEEEEEEeecC-----------------------------CCcccEEEEEECC-CCCccCCcCC-Cc
Confidence 34677889998887754110 0122357999999 9998777733 44
No 404
>KOG1645 consensus RING-finger-containing E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=29.27 E-value=1.7e+02 Score=27.66 Aligned_cols=69 Identities=14% Similarity=-0.031 Sum_probs=44.5
Q ss_pred CCCCceEEEeeCC-CeEEEEecCCEEEEEEcCCCeeEEeeccCCCcccCeEECCC--CCEEEEeCCCcEEEEc
Q 018474 51 VNHPEDVSVVVSK-GALYTATRDGWVKYFILHNETLVNWKHIDSQSLLGLTTTKD--GGVILCDNEKGLLKVT 120 (355)
Q Consensus 51 ~~~p~~i~~d~~~-g~l~~~~~~g~i~~~~~~~g~~~~~~~~~~~p~~gl~~d~~--g~L~v~~~~~gl~~~~ 120 (355)
...-.+|++.+.. |.+-.++.+..|..+|.++.....--.....+. +.++|.+ ..||.++..+.++.||
T Consensus 193 g~~IrdlafSp~~~GLl~~asl~nkiki~dlet~~~vssy~a~~~~w-SC~wDlde~h~IYaGl~nG~VlvyD 264 (463)
T KOG1645|consen 193 GSFIRDLAFSPFNEGLLGLASLGNKIKIMDLETSCVVSSYIAYNQIW-SCCWDLDERHVIYAGLQNGMVLVYD 264 (463)
T ss_pred chhhhhhccCccccceeeeeccCceEEEEecccceeeeheeccCCce-eeeeccCCcceeEEeccCceEEEEE
Confidence 3445666776544 356667777788888876654322112234567 7777744 4689998888899998
No 405
>PF08309 LVIVD: LVIVD repeat; InterPro: IPR013211 This repeat is found in bacterial and archaeal cell surface proteins, many of which are hypothetical. The secondary structure corresponding to this repeat is predicted to comprise 4 beta-strands, which may associate to form a beta-propeller. The repeat copy number varies from 2-14. This repeat is sometimes found with the PKD domain IPR000601 from INTERPRO.
Probab=27.92 E-value=1.5e+02 Score=18.08 Aligned_cols=27 Identities=22% Similarity=0.225 Sum_probs=20.3
Q ss_pred CceEEEeeCCCeEEEEecCCEEEEEEcCC
Q 018474 54 PEDVSVVVSKGALYTATRDGWVKYFILHN 82 (355)
Q Consensus 54 p~~i~~d~~~g~l~~~~~~g~i~~~~~~~ 82 (355)
..++++. ++.+|++..++++..+|..+
T Consensus 4 a~~v~v~--g~yaYva~~~~Gl~IvDISn 30 (42)
T PF08309_consen 4 ARDVAVS--GNYAYVADGNNGLVIVDISN 30 (42)
T ss_pred EEEEEEE--CCEEEEEeCCCCEEEEECCC
Confidence 3456664 88999998877799998743
No 406
>PF05131 Pep3_Vps18: Pep3/Vps18/deep orange family; InterPro: IPR007810 This region is found in a number of proteins identified as being involved in Golgi function and vacuolar sorting. The molecular function of this region is unknown. Proteins containing this domain also contain a C-terminal ring finger domain.
Probab=27.72 E-value=3.2e+02 Score=21.88 Aligned_cols=64 Identities=13% Similarity=0.158 Sum_probs=40.6
Q ss_pred CCCceEEEeeCCCeEEEEecCCEEEEEEcCCCeeE---EeeccCCCcccCeEECCC-CCEEEEeCCCcEEEEc
Q 018474 52 NHPEDVSVVVSKGALYTATRDGWVKYFILHNETLV---NWKHIDSQSLLGLTTTKD-GGVILCDNEKGLLKVT 120 (355)
Q Consensus 52 ~~p~~i~~d~~~g~l~~~~~~g~i~~~~~~~g~~~---~~~~~~~~p~~gl~~d~~-g~L~v~~~~~gl~~~~ 120 (355)
..|.+|+.. +=..+.. ...+|..++.-+++.. .+....+... ||+.|+. +..|+.+ ...++.+.
T Consensus 34 ~~p~si~lT-~~H~llL--~~~~l~~vn~L~~~vV~e~~~~~~~~~~~-gl~~D~~~~t~W~ys-~~~I~ei~ 101 (147)
T PF05131_consen 34 SPPLSIALT-EFHLLLL--YSDRLIAVNRLNNKVVFEESLLETGGKIL-GLCRDPSSNTFWLYS-SNSIFEIV 101 (147)
T ss_pred CCcceEEee-ceeeeEE--eCCEEEEEEecCCcEEEEEEeccCCccee-eEEEcCCCCeEEEEe-CCeeEEEE
Confidence 348888887 3332222 3456777776666542 2333456788 9999964 5788887 44788876
No 407
>COG5167 VID27 Protein involved in vacuole import and degradation [Intracellular trafficking and secretion]
Probab=27.70 E-value=2e+02 Score=28.25 Aligned_cols=80 Identities=13% Similarity=0.074 Sum_probs=45.8
Q ss_pred EEEecCCEEEEEEcC-CC-ee-----EEeeccCCCcccCeEECCCCCEEEEeCCCcEEEEcCCC--eE-EEcCCcCCccc
Q 018474 67 YTATRDGWVKYFILH-NE-TL-----VNWKHIDSQSLLGLTTTKDGGVILCDNEKGLLKVTEEG--VE-AIVPDASFTND 136 (355)
Q Consensus 67 ~~~~~~g~i~~~~~~-~g-~~-----~~~~~~~~~p~~gl~~d~~g~L~v~~~~~gl~~~~~~g--~~-~~~~~~~~~~~ 136 (355)
.+|..+..|+|+||. .| ++ +.|....... +.....+|.+-++...+.|-.||.-| .+ .++.-...+-+
T Consensus 531 lvGlS~~svFrIDPR~~gNKi~v~esKdY~tKn~Fs--s~~tTesGyIa~as~kGDirLyDRig~rAKtalP~lG~aIk~ 608 (776)
T COG5167 531 LVGLSDYSVFRIDPRARGNKIKVVESKDYKTKNKFS--SGMTTESGYIAAASRKGDIRLYDRIGKRAKTALPGLGDAIKH 608 (776)
T ss_pred EEeecccceEEecccccCCceeeeeehhcccccccc--ccccccCceEEEecCCCceeeehhhcchhhhcCcccccceee
Confidence 355567779999985 23 22 2222222222 33444688888887555566666544 33 33333366778
Q ss_pred EEEccCCcEEEE
Q 018474 137 VIAASDGTLYFT 148 (355)
Q Consensus 137 l~~d~dG~ly~~ 148 (355)
+.+..+|...++
T Consensus 609 idvta~Gk~ila 620 (776)
T COG5167 609 IDVTANGKHILA 620 (776)
T ss_pred eEeecCCcEEEE
Confidence 888888864444
No 408
>KOG1034 consensus Transcriptional repressor EED/ESC/FIE, required for transcriptional silencing, WD repeat superfamily [Transcription]
Probab=27.12 E-value=5.1e+02 Score=23.99 Aligned_cols=84 Identities=17% Similarity=0.126 Sum_probs=53.4
Q ss_pred CCeEEEEeCCCCeEEEee-ccccccccEEEeCCCCEEEEEeCCCCeEEEEEeCCCCCcceeEecccCCCCcCce---EEC
Q 018474 169 YGQLRKYDPKLKETTVLH-EGFYFANGIALSKNEDFVVVCESWKFRCRRYWLKGDRAGILDAFIENLPGGPDNI---NLA 244 (355)
Q Consensus 169 ~g~l~~~dp~~~~~~~~~-~~~~~pngi~~~~dg~~l~v~~~~~~~i~~~~~~~~~~~~~~~~~~~~~g~p~~i---~~d 244 (355)
.|-++.+|+.+++..... ......|-|.+.|+.-.|+++.+....|..++++.. ..-....+..|.-+.+ -++
T Consensus 114 ~GvIrVid~~~~~~~~~~~ghG~sINeik~~p~~~qlvls~SkD~svRlwnI~~~---~Cv~VfGG~egHrdeVLSvD~~ 190 (385)
T KOG1034|consen 114 LGVIRVIDVVSGQCSKNYRGHGGSINEIKFHPDRPQLVLSASKDHSVRLWNIQTD---VCVAVFGGVEGHRDEVLSVDFS 190 (385)
T ss_pred eeEEEEEecchhhhccceeccCccchhhhcCCCCCcEEEEecCCceEEEEeccCC---eEEEEecccccccCcEEEEEEc
Confidence 455777898877765433 223456888999998889999988888888888543 2222222444444443 356
Q ss_pred CCCCEEEEeec
Q 018474 245 PDGSFWIGLIK 255 (355)
Q Consensus 245 ~~G~lwv~~~~ 255 (355)
.+|...+++..
T Consensus 191 ~~gd~i~ScGm 201 (385)
T KOG1034|consen 191 LDGDRIASCGM 201 (385)
T ss_pred CCCCeeeccCC
Confidence 77775555543
No 409
>PRK06132 hypothetical protein; Provisional
Probab=26.76 E-value=5e+02 Score=24.38 Aligned_cols=19 Identities=21% Similarity=0.303 Sum_probs=13.0
Q ss_pred CCCceEEEeeCCCeEEEEe
Q 018474 52 NHPEDVSVVVSKGALYTAT 70 (355)
Q Consensus 52 ~~p~~i~~d~~~g~l~~~~ 70 (355)
.+|..|.++..+..+|+=.
T Consensus 58 ~~p~~IvVsl~~qrL~Vy~ 76 (359)
T PRK06132 58 QGPLVIVVSLDEQRLYVYD 76 (359)
T ss_pred CCCeEEEEECCCCEEEEEE
Confidence 4666788886666777644
No 410
>KOG0267 consensus Microtubule severing protein katanin p80 subunit B (contains WD40 repeats) [Cell cycle control, cell division, chromosome partitioning]
Probab=26.35 E-value=1.5e+02 Score=30.19 Aligned_cols=106 Identities=15% Similarity=0.142 Sum_probs=59.7
Q ss_pred cccCeEECCCCCEEEEeCCCcEEEEcC--CC--eEEEcCCcCCcccEEEccCCcEEEEeCCCCCCCccccccccccCCCC
Q 018474 95 SLLGLTTTKDGGVILCDNEKGLLKVTE--EG--VEAIVPDASFTNDVIAASDGTLYFTVASTKYTPTDFYKDMAEGKPYG 170 (355)
Q Consensus 95 p~~gl~~d~~g~L~v~~~~~gl~~~~~--~g--~~~~~~~~~~~~~l~~d~dG~ly~~d~~~~~~~~~~~~~~~~~~~~g 170 (355)
+. ++.++.+-.|..+....|.+++.+ ++ ++.+......+-.+.+.|-|....+.+. +....+|+....|
T Consensus 73 Ie-Sl~f~~~E~LlaagsasgtiK~wDleeAk~vrtLtgh~~~~~sv~f~P~~~~~a~gSt------dtd~~iwD~Rk~G 145 (825)
T KOG0267|consen 73 IE-SLTFDTSERLLAAGSASGTIKVWDLEEAKIVRTLTGHLLNITSVDFHPYGEFFASGST------DTDLKIWDIRKKG 145 (825)
T ss_pred ce-eeecCcchhhhcccccCCceeeeehhhhhhhhhhhccccCcceeeeccceEEeccccc------cccceehhhhccC
Confidence 45 788888888888777778777752 44 5555444344555666666644321111 1223455555566
Q ss_pred eEEEEeCCCCeEEEeeccccccccEEEeCCCCEEEEEeCCC-CeEEEEEe
Q 018474 171 QLRKYDPKLKETTVLHEGFYFANGIALSKNEDFVVVCESWK-FRCRRYWL 219 (355)
Q Consensus 171 ~l~~~dp~~~~~~~~~~~~~~pngi~~~~dg~~l~v~~~~~-~~i~~~~~ 219 (355)
..+.|+-. ...-+-+.|+|||++ +.+-+. +.+..++.
T Consensus 146 c~~~~~s~----------~~vv~~l~lsP~Gr~--v~~g~ed~tvki~d~ 183 (825)
T KOG0267|consen 146 CSHTYKSH----------TRVVDVLRLSPDGRW--VASGGEDNTVKIWDL 183 (825)
T ss_pred ceeeecCC----------cceeEEEeecCCCce--eeccCCcceeeeecc
Confidence 66666632 122455788999973 333333 44555554
No 411
>COG5276 Uncharacterized conserved protein [Function unknown]
Probab=25.53 E-value=5.3e+02 Score=23.64 Aligned_cols=57 Identities=16% Similarity=0.236 Sum_probs=35.7
Q ss_pred CCCeEEEEecCCEEEEEEcCCCe-eE--EeeccCCCcccCeEECCCCCEEEEeCCCcEEEEc
Q 018474 62 SKGALYTATRDGWVKYFILHNET-LV--NWKHIDSQSLLGLTTTKDGGVILCDNEKGLLKVT 120 (355)
Q Consensus 62 ~~g~l~~~~~~g~i~~~~~~~g~-~~--~~~~~~~~p~~gl~~d~~g~L~v~~~~~gl~~~~ 120 (355)
++...|++..+.+++.+|..+-. .+ -+....+-.+ |..+. ...+||+++..|++.++
T Consensus 95 se~yvyvad~ssGL~IvDIS~P~sP~~~~~lnt~gyay-gv~vs-Gn~aYVadlddgfLivd 154 (370)
T COG5276 95 SEEYVYVADWSSGLRIVDISTPDSPTLIGFLNTDGYAY-GVYVS-GNYAYVADLDDGFLIVD 154 (370)
T ss_pred cccEEEEEcCCCceEEEeccCCCCcceeccccCCceEE-EEEec-CCEEEEeeccCcEEEEE
Confidence 47788988887778888864332 11 1111112233 44442 33599999888998888
No 412
>KOG2114 consensus Vacuolar assembly/sorting protein PEP5/VPS11 [Intracellular trafficking, secretion, and vesicular transport]
Probab=25.15 E-value=8.3e+02 Score=25.81 Aligned_cols=23 Identities=26% Similarity=0.268 Sum_probs=19.0
Q ss_pred EEeeCCCeEEEEecCCEEEEEEc
Q 018474 58 SVVVSKGALYTATRDGWVKYFIL 80 (355)
Q Consensus 58 ~~d~~~g~l~~~~~~g~i~~~~~ 80 (355)
.+++.++.+++|+.+|+|+.++.
T Consensus 30 c~~s~~~~vvigt~~G~V~~Ln~ 52 (933)
T KOG2114|consen 30 CCSSSTGSVVIGTADGRVVILNS 52 (933)
T ss_pred EEcCCCceEEEeeccccEEEecc
Confidence 35557888999999999998875
No 413
>KOG0300 consensus WD40 repeat-containing protein [Function unknown]
Probab=24.69 E-value=5.5e+02 Score=23.59 Aligned_cols=141 Identities=16% Similarity=0.159 Sum_probs=73.2
Q ss_pred CCeEEEEecCCEEEEEEcCCCeeEEeeccCCCcccCeEECCCCCEEEEeCCCcEEEEcC--CC---eEEEcCCcCCcccE
Q 018474 63 KGALYTATRDGWVKYFILHNETLVNWKHIDSQSLLGLTTTKDGGVILCDNEKGLLKVTE--EG---VEAIVPDASFTNDV 137 (355)
Q Consensus 63 ~g~l~~~~~~g~i~~~~~~~g~~~~~~~~~~~p~~gl~~d~~g~L~v~~~~~gl~~~~~--~g---~~~~~~~~~~~~~l 137 (355)
+..+..++-+.....+|.++|........-..-.+.....+..+|.|+...+-.|++.. .. +.++......+.+.
T Consensus 284 g~Q~vTaSWDRTAnlwDVEtge~v~~LtGHd~ELtHcstHptQrLVvTsSrDtTFRLWDFReaI~sV~VFQGHtdtVTS~ 363 (481)
T KOG0300|consen 284 GQQMVTASWDRTANLWDVETGEVVNILTGHDSELTHCSTHPTQRLVVTSSRDTTFRLWDFREAIQSVAVFQGHTDTVTSV 363 (481)
T ss_pred cceeeeeeccccceeeeeccCceeccccCcchhccccccCCcceEEEEeccCceeEeccchhhcceeeeecccccceeEE
Confidence 34455566666666778777876654432111110233446778888877666777652 22 33333333445555
Q ss_pred EEccCCcEEEEeCCCCCCCccccccccccCCCCeEEEEeCCCCeEEEee--ccccccccEEEeCCCCEEEEEeCCCCeEE
Q 018474 138 IAASDGTLYFTVASTKYTPTDFYKDMAEGKPYGQLRKYDPKLKETTVLH--EGFYFANGIALSKNEDFVVVCESWKFRCR 215 (355)
Q Consensus 138 ~~d~dG~ly~~d~~~~~~~~~~~~~~~~~~~~g~l~~~dp~~~~~~~~~--~~~~~pngi~~~~dg~~l~v~~~~~~~i~ 215 (355)
++..+.++.-+ .....+-.||..+-. ..++ ..-+-.|-++++..+. ++..--.+..|.
T Consensus 364 vF~~dd~vVSg------------------SDDrTvKvWdLrNMR-splATIRtdS~~NRvavs~g~~-iIAiPhDNRqvR 423 (481)
T KOG0300|consen 364 VFNTDDRVVSG------------------SDDRTVKVWDLRNMR-SPLATIRTDSPANRVAVSKGHP-IIAIPHDNRQVR 423 (481)
T ss_pred EEecCCceeec------------------CCCceEEEeeecccc-CcceeeecCCccceeEeecCCc-eEEeccCCceEE
Confidence 55554444221 112345555543221 1111 1123457788887766 444444455678
Q ss_pred EEEeCCCC
Q 018474 216 RYWLKGDR 223 (355)
Q Consensus 216 ~~~~~~~~ 223 (355)
.||++|.+
T Consensus 424 lfDlnG~R 431 (481)
T KOG0300|consen 424 LFDLNGNR 431 (481)
T ss_pred EEecCCCc
Confidence 88887754
No 414
>PF13418 Kelch_4: Galactose oxidase, central domain; PDB: 2UVK_B.
Probab=24.64 E-value=1.5e+02 Score=18.08 Aligned_cols=17 Identities=24% Similarity=0.206 Sum_probs=11.6
Q ss_pred CCeEEEEeCCCCeEEEe
Q 018474 169 YGQLRKYDPKLKETTVL 185 (355)
Q Consensus 169 ~g~l~~~dp~~~~~~~~ 185 (355)
...+++||+++++++.+
T Consensus 28 ~~d~~~~d~~~~~W~~~ 44 (49)
T PF13418_consen 28 LNDLWIFDIETNTWTRL 44 (49)
T ss_dssp ---EEEEETTTTEEEE-
T ss_pred cCCEEEEECCCCEEEEC
Confidence 34689999999988765
No 415
>COG4447 Uncharacterized protein related to plant photosystem II stability/assembly factor [General function prediction only]
Probab=23.51 E-value=5.6e+02 Score=23.24 Aligned_cols=21 Identities=29% Similarity=0.354 Sum_probs=16.1
Q ss_pred ccccccEEEeCCCCEEEEEeC
Q 018474 189 FYFANGIALSKNEDFVVVCES 209 (355)
Q Consensus 189 ~~~pngi~~~~dg~~l~v~~~ 209 (355)
+..||-++.+.|++.+.|...
T Consensus 170 ~~~~n~ia~s~dng~vaVg~r 190 (339)
T COG4447 170 LAVPNEIARSADNGYVAVGAR 190 (339)
T ss_pred hhhhhhhhhhccCCeEEEecC
Confidence 457888999999987766654
No 416
>KOG0302 consensus Ribosome Assembly protein [General function prediction only]
Probab=23.42 E-value=6.4e+02 Score=23.84 Aligned_cols=150 Identities=14% Similarity=0.074 Sum_probs=74.3
Q ss_pred CCCceEEEee---CCCeEEEEecCCEEEEEEcCCCeeEEe----eccCCCcccCeEECCC-CCEEEEeCCCcEEEE-c-C
Q 018474 52 NHPEDVSVVV---SKGALYTATRDGWVKYFILHNETLVNW----KHIDSQSLLGLTTTKD-GGVILCDNEKGLLKV-T-E 121 (355)
Q Consensus 52 ~~p~~i~~d~---~~g~l~~~~~~g~i~~~~~~~g~~~~~----~~~~~~p~~gl~~d~~-g~L~v~~~~~gl~~~-~-~ 121 (355)
.+-|+.++|- ..|.|..|...+.|+...+.+|.+..= ........ +|.+.+. ..++...+-.|-+++ | .
T Consensus 210 hk~EGy~LdWSp~~~g~LlsGDc~~~I~lw~~~~g~W~vd~~Pf~gH~~SVE-DLqWSptE~~vfaScS~DgsIrIWDiR 288 (440)
T KOG0302|consen 210 HKGEGYGLDWSPIKTGRLLSGDCVKGIHLWEPSTGSWKVDQRPFTGHTKSVE-DLQWSPTEDGVFASCSCDGSIRIWDIR 288 (440)
T ss_pred cCccceeeecccccccccccCccccceEeeeeccCceeecCccccccccchh-hhccCCccCceEEeeecCceEEEEEec
Confidence 3445544442 345566665566788888878876531 11112234 5666543 344443333444444 3 3
Q ss_pred CC-----eEEEcCCcCCcccEEEccCCcEEEEeCCCCCCCccccccccccCCCCeEEEEeCCCCeEE----Eeecccccc
Q 018474 122 EG-----VEAIVPDASFTNDVIAASDGTLYFTVASTKYTPTDFYKDMAEGKPYGQLRKYDPKLKETT----VLHEGFYFA 192 (355)
Q Consensus 122 ~g-----~~~~~~~~~~~~~l~~d~dG~ly~~d~~~~~~~~~~~~~~~~~~~~g~l~~~dp~~~~~~----~~~~~~~~p 192 (355)
.+ +.+ ......+|-|....+-.+..+ |...|.+-.+|...-+.. .+...-.-.
T Consensus 289 s~~~~~~~~~-kAh~sDVNVISWnr~~~lLas-----------------G~DdGt~~iwDLR~~~~~~pVA~fk~Hk~pI 350 (440)
T KOG0302|consen 289 SGPKKAAVST-KAHNSDVNVISWNRREPLLAS-----------------GGDDGTLSIWDLRQFKSGQPVATFKYHKAPI 350 (440)
T ss_pred CCCccceeEe-eccCCceeeEEccCCcceeee-----------------cCCCceEEEEEhhhccCCCcceeEEeccCCe
Confidence 33 111 111134444444433232222 233555666665433222 111111123
Q ss_pred ccEEEeCCCCEEEEEeCCCCeEEEEEeC
Q 018474 193 NGIALSKNEDFVVVCESWKFRCRRYWLK 220 (355)
Q Consensus 193 ngi~~~~dg~~l~v~~~~~~~i~~~~~~ 220 (355)
..|.++|....++.+....+.|..+|++
T Consensus 351 tsieW~p~e~s~iaasg~D~QitiWDls 378 (440)
T KOG0302|consen 351 TSIEWHPHEDSVIAASGEDNQITIWDLS 378 (440)
T ss_pred eEEEeccccCceEEeccCCCcEEEEEee
Confidence 4678888888777777778888888874
No 417
>PF12894 Apc4_WD40: Anaphase-promoting complex subunit 4 WD40 domain
Probab=22.61 E-value=2.1e+02 Score=17.89 Aligned_cols=28 Identities=11% Similarity=0.037 Sum_probs=19.1
Q ss_pred cEEEeCCCCEEEEEeCCCCeEEEEEeCCC
Q 018474 194 GIALSKNEDFVVVCESWKFRCRRYWLKGD 222 (355)
Q Consensus 194 gi~~~~dg~~l~v~~~~~~~i~~~~~~~~ 222 (355)
-++++|..+ |+...+.++.|..|.+++.
T Consensus 16 ~~~w~P~md-LiA~~t~~g~v~v~Rl~~q 43 (47)
T PF12894_consen 16 CMSWCPTMD-LIALGTEDGEVLVYRLNWQ 43 (47)
T ss_pred EEEECCCCC-EEEEEECCCeEEEEECCCc
Confidence 567788887 4444456788888887543
No 418
>COG4222 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=22.32 E-value=6.8e+02 Score=23.80 Aligned_cols=17 Identities=12% Similarity=0.182 Sum_probs=13.1
Q ss_pred cccEEEeCCCCEEEEEe
Q 018474 192 ANGIALSKNEDFVVVCE 208 (355)
Q Consensus 192 pngi~~~~dg~~l~v~~ 208 (355)
-.|++++||++.+|-.-
T Consensus 202 fEglait~d~~~L~~~l 218 (391)
T COG4222 202 FEGLAITPDGKKLYALL 218 (391)
T ss_pred eeeEEecCCCceEEEEE
Confidence 35789999999887653
No 419
>PF15416 DUF4623: Domain of unknown function (DUF4623)
Probab=21.86 E-value=6.5e+02 Score=23.41 Aligned_cols=97 Identities=16% Similarity=0.224 Sum_probs=57.5
Q ss_pred cEEEEc--CCC-eEEEcCCc------CCcccEEEccCCcEEEEeCCCCCCCccccccccccCCCCeEEEEeCCCCeEEEe
Q 018474 115 GLLKVT--EEG-VEAIVPDA------SFTNDVIAASDGTLYFTVASTKYTPTDFYKDMAEGKPYGQLRKYDPKLKETTVL 185 (355)
Q Consensus 115 gl~~~~--~~g-~~~~~~~~------~~~~~l~~d~dG~ly~~d~~~~~~~~~~~~~~~~~~~~g~l~~~dp~~~~~~~~ 185 (355)
.|+.++ +.| +..+.-.. .++..+..-.+|.+|+++-+... ..--.+|.|..-+.+-+++
T Consensus 157 HLLkvsdLK~g~inpI~LdlTgVtgGTf~yNmgAl~nGH~Y~asLSG~~------------~SPLKiY~w~tPts~PevI 224 (442)
T PF15416_consen 157 HLLKVSDLKAGEINPIPLDLTGVTGGTFSYNMGALVNGHSYLASLSGGK------------ASPLKIYYWETPTSAPEVI 224 (442)
T ss_pred eeeehhHhhcCCccceeeecccccCcccccchhhhcCCeEEEEeccCCC------------CCceEEEEecCCCCCceEE
Confidence 467776 345 44432221 56666766678999998754210 0112578886555555555
Q ss_pred ecc----c-------cccccEEEeCCCC-EEEEEeCCCCeEEEEEeCCCC
Q 018474 186 HEG----F-------YFANGIALSKNED-FVVVCESWKFRCRRYWLKGDR 223 (355)
Q Consensus 186 ~~~----~-------~~pngi~~~~dg~-~l~v~~~~~~~i~~~~~~~~~ 223 (355)
++- + .-.-.+.++.+|+ ++++.+.....+.|+.+++.+
T Consensus 225 a~inV~~I~gAg~RhGDn~S~nlD~nGnGyiFFgdnaat~ilR~~vsn~k 274 (442)
T PF15416_consen 225 ADINVGDIPGAGNRHGDNFSLNLDENGNGYIFFGDNAATNILRFTVSNYK 274 (442)
T ss_pred EeeeeccCcccccccCcceeEEeccCCceEEEecCCccceEEEEEccCcc
Confidence 321 1 0112366778777 667777777889999997643
No 420
>TIGR03803 Gloeo_Verruco Gloeo_Verruco repeat. This model describes a rare protein repeat, found so far in two species of Verrucomicrobia (Chthoniobacter flavus and Verrucomicrobium spinosum) and in four different proteins of Gloeobacter violaceus PCC7421. In the Verrucomicrobial species, the repeat region is followed by a PEP-CTERM protein-sorting signal, suggesting an extracellular location.
Probab=21.68 E-value=1.8e+02 Score=16.88 Aligned_cols=15 Identities=7% Similarity=0.120 Sum_probs=12.0
Q ss_pred CCceEEEEEeCCCCeE
Q 018474 290 DAGARVVKVDGNDGKI 305 (355)
Q Consensus 290 ~~~~~v~~~~~~~g~~ 305 (355)
...+.|+++++ .|..
T Consensus 14 ~~~GTvf~~~~-~g~~ 28 (34)
T TIGR03803 14 SGFGTLYRLST-AGGT 28 (34)
T ss_pred CCceeEEEEcC-CCCe
Confidence 44578999999 8876
No 421
>smart00320 WD40 WD40 repeats. Note that these repeats are permuted with respect to the structural repeats (blades) of the beta propeller domain.
Probab=21.46 E-value=1.3e+02 Score=15.32 Aligned_cols=26 Identities=23% Similarity=0.258 Sum_probs=14.9
Q ss_pred CCceEEEeeCCCeEEEEecCCEEEEE
Q 018474 53 HPEDVSVVVSKGALYTATRDGWVKYF 78 (355)
Q Consensus 53 ~p~~i~~d~~~g~l~~~~~~g~i~~~ 78 (355)
...++.+.+.+..+.++..++.+..+
T Consensus 14 ~i~~~~~~~~~~~~~~~~~d~~~~~~ 39 (40)
T smart00320 14 PVTSVAFSPDGKYLASASDDGTIKLW 39 (40)
T ss_pred ceeEEEECCCCCEEEEecCCCeEEEc
Confidence 34566666445555566667765543
No 422
>smart00284 OLF Olfactomedin-like domains.
Probab=21.28 E-value=5.8e+02 Score=22.62 Aligned_cols=41 Identities=15% Similarity=0.057 Sum_probs=24.6
Q ss_pred CCeEEEEeCCCCeEEEe--eccc----c------ccccEEEeCCCCEEEEEeC
Q 018474 169 YGQLRKYDPKLKETTVL--HEGF----Y------FANGIALSKNEDFVVVCES 209 (355)
Q Consensus 169 ~g~l~~~dp~~~~~~~~--~~~~----~------~pngi~~~~dg~~l~v~~~ 209 (355)
...+.+||..++.+... .+.. . ....|.+.-|++.||+.-.
T Consensus 93 s~~iiKydL~t~~v~~~~~Lp~a~y~~~~~Y~~~~~sdiDlAvDE~GLWvIYa 145 (255)
T smart00284 93 SHDICRFDLTTETYQKEPLLNGAGYNNRFPYAWGGFSDIDLAVDENGLWVIYA 145 (255)
T ss_pred CccEEEEECCCCcEEEEEecCccccccccccccCCCccEEEEEcCCceEEEEe
Confidence 34699999988876422 2211 1 1234667777777888743
No 423
>KOG3567 consensus Peptidylglycine alpha-amidating monooxygenase [Posttranslational modification, protein turnover, chaperones]
Probab=21.03 E-value=2.1e+02 Score=27.68 Aligned_cols=20 Identities=15% Similarity=0.245 Sum_probs=16.2
Q ss_pred CCcccEEEccCCcEEEEeCC
Q 018474 132 SFTNDVIAASDGTLYFTVAS 151 (355)
Q Consensus 132 ~~~~~l~~d~dG~ly~~d~~ 151 (355)
..|.++.+|.||..|++|-.
T Consensus 467 ylphgl~~dkdgf~~~tdva 486 (501)
T KOG3567|consen 467 YLPHGLSIDKDGFYWVTDVA 486 (501)
T ss_pred ecCCcceecCCCcEEeeccc
Confidence 45778889999999988865
No 424
>KOG0277 consensus Peroxisomal targeting signal type 2 receptor [Intracellular trafficking, secretion, and vesicular transport]
Probab=20.98 E-value=6e+02 Score=22.68 Aligned_cols=52 Identities=13% Similarity=0.089 Sum_probs=29.4
Q ss_pred CCeEEEEeCCCC-eEEEeeccccccccEEEeCCCCEEEEEeCCCCeEEEEEeC
Q 018474 169 YGQLRKYDPKLK-ETTVLHEGFYFANGIALSKNEDFVVVCESWKFRCRRYWLK 220 (355)
Q Consensus 169 ~g~l~~~dp~~~-~~~~~~~~~~~pngi~~~~dg~~l~v~~~~~~~i~~~~~~ 220 (355)
.+.+-.|+|+.+ .+.++...-....+.+++|....++.+.++.+.+..+|++
T Consensus 126 D~TiKLW~~~r~~Sv~Tf~gh~~~Iy~a~~sp~~~nlfas~Sgd~~l~lwdvr 178 (311)
T KOG0277|consen 126 DGTIKLWDPNRPNSVQTFNGHNSCIYQAAFSPHIPNLFASASGDGTLRLWDVR 178 (311)
T ss_pred CCceEeecCCCCcceEeecCCccEEEEEecCCCCCCeEEEccCCceEEEEEec
Confidence 455666666433 3333332223334566777665577777776666667764
No 425
>PF01344 Kelch_1: Kelch motif; InterPro: IPR006652 Kelch is a 50-residue motif, named after the Drosophila mutant in which it was first identified []. This sequence motif represents one beta-sheet blade, and several of these repeats can associate to form a beta-propeller. For instance, the motif appears 6 times in Drosophila egg-chamber regulatory protein, creating a 6-bladed beta-propeller. The motif is also found in mouse protein MIPP [] and in a number of poxviruses. In addition, kelch repeats have been recognised in alpha- and beta-scruin [, ], and in galactose oxidase from the fungus Dactylium dendroides [, ]. The structure of galactose oxidase reveals that the repeated sequence corresponds to a 4-stranded anti-parallel beta-sheet motif that forms the repeat unit in a super-barrel structural fold []. The known functions of kelch-containing proteins are diverse: scruin is an actin cross-linking protein; galactose oxidase catalyses the oxidation of the hydroxyl group at the C6 position in D-galactose; neuraminidase hydrolyses sialic acid residues from glycoproteins; and kelch may have a cytoskeletal function, as it is localised to the actin-rich ring canals that connect the 15 nurse cells to the developing oocyte in Drosophila []. Nevertheless, based on the location of the kelch pattern in the catalytic unit in galactose oxidase, functionally important residues have been predicted in glyoxal oxidase []. This entry represents a type of kelch sequence motif that comprises one beta-sheet blade.; GO: 0005515 protein binding; PDB: 2XN4_A 2WOZ_A 3II7_A 4ASC_A 1U6D_X 1ZGK_A 2FLU_X 2VPJ_A 2DYH_A 1X2R_A ....
Probab=20.95 E-value=2e+02 Score=17.13 Aligned_cols=37 Identities=16% Similarity=0.288 Sum_probs=23.5
Q ss_pred EccCCcEEEEeCCCCCCCccccccccccCCCCeEEEEeCCCCeEEEee
Q 018474 139 AASDGTLYFTVASTKYTPTDFYKDMAEGKPYGQLRKYDPKLKETTVLH 186 (355)
Q Consensus 139 ~d~dG~ly~~d~~~~~~~~~~~~~~~~~~~~g~l~~~dp~~~~~~~~~ 186 (355)
+.-++.||+...... .......+++||+.+++++.+.
T Consensus 8 ~~~~~~iyv~GG~~~-----------~~~~~~~v~~yd~~~~~W~~~~ 44 (47)
T PF01344_consen 8 VVVGNKIYVIGGYDG-----------NNQPTNSVEVYDPETNTWEELP 44 (47)
T ss_dssp EEETTEEEEEEEBES-----------TSSBEEEEEEEETTTTEEEEEE
T ss_pred EEECCEEEEEeeecc-----------cCceeeeEEEEeCCCCEEEEcC
Confidence 334678887643211 1123457999999999988654
No 426
>TIGR03547 muta_rot_YjhT mutatrotase, YjhT family. Members of this protein family contain multiple copies of the beta-propeller-forming Kelch repeat. All are full-length homologs to YjhT of Escherichia coli, which has been identified as a mutarotase for sialic acid. This protein improves bacterial ability to obtain host sialic acid, and thus serves as a virulence factor. Some bacteria carry what appears to be a cyclically permuted homolog of this protein.
Probab=20.66 E-value=6.5e+02 Score=22.94 Aligned_cols=38 Identities=13% Similarity=0.097 Sum_probs=22.4
Q ss_pred EEEEEEcCCCeeEEeeccCCCcccCe-EE-CCCCCEEEEe
Q 018474 74 WVKYFILHNETLVNWKHIDSQSLLGL-TT-TKDGGVILCD 111 (355)
Q Consensus 74 ~i~~~~~~~g~~~~~~~~~~~p~~gl-~~-d~~g~L~v~~ 111 (355)
.++++|+.+++++.......++..+. +. --+|+||+..
T Consensus 86 ~v~~Yd~~~~~W~~~~~~~p~~~~~~~~~~~~~g~IYviG 125 (346)
T TIGR03547 86 DVYRYDPKKNSWQKLDTRSPVGLLGASGFSLHNGQAYFTG 125 (346)
T ss_pred cEEEEECCCCEEecCCCCCCCcccceeEEEEeCCEEEEEc
Confidence 57899999999887642111111022 11 2478899864
Done!