BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 018477
(355 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|2BZ0|A Chain A, Crystal Structure Of E. Coli Gtp Cyclohydrolase Ii In
Complex With Gtp Analogue, Gmpcpp, And Zinc
pdb|2BZ0|B Chain B, Crystal Structure Of E. Coli Gtp Cyclohydrolase Ii In
Complex With Gtp Analogue, Gmpcpp, And Zinc
Length = 196
Score = 177 bits (450), Expect = 5e-45, Method: Compositional matrix adjust.
Identities = 91/188 (48%), Positives = 119/188 (63%), Gaps = 1/188 (0%)
Query: 137 AAAPIPTMWGPFKAHCYRSLLDGIEHIAMVKGEIGDGQDILVRVHSECLTGDIFGSARCD 196
A A +PT WG F + L G +H+A+V G+I +L RVHSECLTGD S RCD
Sbjct: 7 AEAKLPTPWGDFLMVGFEELATGHDHVALVYGDISGHTPVLARVHSECLTGDALFSLRCD 66
Query: 197 CGNQLALAMKQIEAAGRGVLVYLRGHEGRGIGLGHKLRAYNLQDDGHDTVEANEELGLPV 256
CG QL A+ QI GRG+L+Y R EGR IGL +K+RAY LQD G+DTVEAN +LG
Sbjct: 67 CGFQLEAALTQIAEEGRGILLYHR-QEGRNIGLLNKIRAYALQDQGYDTVEANHQLGFAA 125
Query: 257 DSREYGIGAQILRDLGVRTMKLMTNNPSKYVGLKGYGLAIAGRIPLLTPITMENKRYLET 316
D R++ + A + + LGV ++L+TNNP K L G+ I R+PL+ N+ YL+T
Sbjct: 126 DERDFTLCADMFKLLGVNEVRLLTNNPKKVEILTEAGINIVERVPLIVGRNPNNEHYLDT 185
Query: 317 KRAKMGHV 324
K KMGH+
Sbjct: 186 KAEKMGHL 193
>pdb|2BZ1|A Chain A, Crystal Structure Of Apo E. Coli Gtp Cyclohydrolase Ii
Length = 196
Score = 174 bits (442), Expect = 5e-44, Method: Compositional matrix adjust.
Identities = 90/188 (47%), Positives = 117/188 (62%), Gaps = 1/188 (0%)
Query: 137 AAAPIPTMWGPFKAHCYRSLLDGIEHIAMVKGEIGDGQDILVRVHSECLTGDIFGSARCD 196
A A +PT WG F + L G +H+A+V G+I +L RVHSECLTGD S RCD
Sbjct: 7 AEAKLPTPWGDFLXVGFEELATGHDHVALVYGDISGHTPVLARVHSECLTGDALFSLRCD 66
Query: 197 CGNQLALAMKQIEAAGRGVLVYLRGHEGRGIGLGHKLRAYNLQDDGHDTVEANEELGLPV 256
CG QL A+ QI GRG+L+Y R EGR IGL +K+RAY LQD G+DTVEAN +LG
Sbjct: 67 CGFQLEAALTQIAEEGRGILLYHR-QEGRNIGLLNKIRAYALQDQGYDTVEANHQLGFAA 125
Query: 257 DSREYGIGAQILRDLGVRTMKLMTNNPSKYVGLKGYGLAIAGRIPLLTPITMENKRYLET 316
D R++ + A + LGV ++L+TNNP K L G+ I R+PL+ N+ YL+T
Sbjct: 126 DERDFTLCADXFKLLGVNEVRLLTNNPKKVEILTEAGINIVERVPLIVGRNPNNEHYLDT 185
Query: 317 KRAKMGHV 324
K K GH+
Sbjct: 186 KAEKXGHL 193
>pdb|1G57|A Chain A, Crystal Structure Of 3,4-Dihydroxy-2-Butanone 4-Phosphate
Synthase
pdb|1G57|B Chain B, Crystal Structure Of 3,4-Dihydroxy-2-Butanone 4-Phosphate
Synthase
pdb|1G58|A Chain A, Crystal Structure Of 3,4-Dihydroxy-2-Butanone 4-Phosphate
Synthase Gold Derivative
pdb|1G58|B Chain B, Crystal Structure Of 3,4-Dihydroxy-2-Butanone 4-Phosphate
Synthase Gold Derivative
Length = 217
Score = 134 bits (337), Expect = 7e-32, Method: Compositional matrix adjust.
Identities = 60/116 (51%), Positives = 80/116 (68%)
Query: 16 FDAKYGTTTGVSANDRAKTVLALACRDSKPEDFNRPGHIFPLKYREGGVLKRAGHTEASV 75
+A G TTGVSA DR TV A +KP D NRPGH+FPL+ + GGVL R GHTEA++
Sbjct: 99 IEAAEGVTTGVSAADRITTVRAAIADGAKPSDLNRPGHVFPLRAQAGGVLTRGGHTEATI 158
Query: 76 DLAVLAGLEPVAVLCEIVDDDGSMARLPKLRQFAQTENLKIISIADLIRYRRKRDR 131
DL LAG +P VLCE+ +DDG+MAR P+ +FA N+ +++I DL+ YR+ +R
Sbjct: 159 DLMTLAGFKPAGVLCELTNDDGTMARAPECIEFANKHNMALVTIEDLVAYRQAHER 214
>pdb|1IEZ|A Chain A, Solution Structure Of 3,4-Dihydroxy-2-Butanone 4-Phosphate
Synthase Of Riboflavin Biosynthesis
Length = 217
Score = 134 bits (337), Expect = 8e-32, Method: Compositional matrix adjust.
Identities = 60/116 (51%), Positives = 80/116 (68%)
Query: 16 FDAKYGTTTGVSANDRAKTVLALACRDSKPEDFNRPGHIFPLKYREGGVLKRAGHTEASV 75
+A G TTGVSA DR TV A +KP D NRPGH+FPL+ + GGVL R GHTEA++
Sbjct: 99 IEAAEGVTTGVSAADRITTVRAAIADGAKPSDLNRPGHVFPLRAQAGGVLTRGGHTEATI 158
Query: 76 DLAVLAGLEPVAVLCEIVDDDGSMARLPKLRQFAQTENLKIISIADLIRYRRKRDR 131
DL LAG +P VLCE+ +DDG+MAR P+ +FA N+ +++I DL+ YR+ +R
Sbjct: 159 DLMTLAGFKPAGVLCELTNDDGTMARAPECIEFANKHNMALVTIEDLVAYRQAHER 214
>pdb|3LQU|A Chain A, Crystal Structure Of 3,4-Dihydroxy-2-Butanone 4-Phosphate
Synthase Complexed With Ribulose-5 Phosphate
pdb|3LQU|B Chain B, Crystal Structure Of 3,4-Dihydroxy-2-Butanone 4-Phosphate
Synthase Complexed With Ribulose-5 Phosphate
pdb|3LRJ|A Chain A, Crystal Structure Of 3,4-Dihydroxy-2-Butanone 4-Phosphate
Synthase In Complex With Sulfate Ion.
pdb|3LRJ|B Chain B, Crystal Structure Of 3,4-Dihydroxy-2-Butanone 4-Phosphate
Synthase In Complex With Sulfate Ion.
pdb|3LRJ|C Chain C, Crystal Structure Of 3,4-Dihydroxy-2-Butanone 4-Phosphate
Synthase In Complex With Sulfate Ion.
pdb|3LRJ|D Chain D, Crystal Structure Of 3,4-Dihydroxy-2-Butanone 4-Phosphate
Synthase In Complex With Sulfate Ion.
pdb|3LS6|A Chain A, Crystal Structure Of 3,4-Dihydroxy-2-Butanone 4-Phosphate
Synthase In Complex With Sulfate And Zinc
pdb|3LS6|B Chain B, Crystal Structure Of 3,4-Dihydroxy-2-Butanone 4-Phosphate
Synthase In Complex With Sulfate And Zinc
Length = 217
Score = 132 bits (331), Expect = 4e-31, Method: Compositional matrix adjust.
Identities = 60/116 (51%), Positives = 79/116 (68%)
Query: 16 FDAKYGTTTGVSANDRAKTVLALACRDSKPEDFNRPGHIFPLKYREGGVLKRAGHTEASV 75
+A G TTGVSA DR TV A +KP D NRPGH+FPL+ + GGVL R GHTEA++
Sbjct: 99 IEAAEGVTTGVSAADRVTTVRAAIKDGAKPSDLNRPGHVFPLRAQAGGVLTRGGHTEATI 158
Query: 76 DLAVLAGLEPVAVLCEIVDDDGSMARLPKLRQFAQTENLKIISIADLIRYRRKRDR 131
DL LAG +P VLCE+ +DDG+MAR P+ FA N+ +++I DL+ YR+ +R
Sbjct: 159 DLMTLAGFKPAGVLCELTNDDGTMARAPECIAFAGQHNMAVVTIEDLVAYRQAHER 214
>pdb|3H07|A Chain A, Crystal Structure Of 3,4-Dihydroxy-2-Butanone 4-Phosphate
Synthase From Yersinia Pestis Co92
pdb|3H07|B Chain B, Crystal Structure Of 3,4-Dihydroxy-2-Butanone 4-Phosphate
Synthase From Yersinia Pestis Co92
Length = 220
Score = 125 bits (315), Expect = 2e-29, Method: Compositional matrix adjust.
Identities = 59/122 (48%), Positives = 80/122 (65%)
Query: 8 FLSTKLFGFDAKYGTTTGVSANDRAKTVLALACRDSKPEDFNRPGHIFPLKYREGGVLKR 67
F + +A G TTGVSA DR T+ ++KP D NRPGH+FPL+ + GGVL R
Sbjct: 94 FQTAFTVTIEAAEGVTTGVSAADRLTTIRKAIADNAKPADLNRPGHVFPLRGQPGGVLSR 153
Query: 68 AGHTEASVDLAVLAGLEPVAVLCEIVDDDGSMARLPKLRQFAQTENLKIISIADLIRYRR 127
GHTEAS+DLA LAG +P VLCE+ +DDGSMA P++ FA+ ++ +++I DL Y +
Sbjct: 154 RGHTEASIDLATLAGYKPAGVLCELTNDDGSMAHAPEVIAFAKLHDMPVVTIDDLAAYLQ 213
Query: 128 KR 129
R
Sbjct: 214 SR 215
>pdb|3MK5|A Chain A, Crystal Structure Of 3,4-Dihydroxy-2-Butanone 4-Phosphate
Synthase Domain From Mycobacterium Tuberculosis With
Sulfate And Zinc At Ph 4.00
Length = 212
Score = 125 bits (313), Expect = 4e-29, Method: Compositional matrix adjust.
Identities = 63/117 (53%), Positives = 83/117 (70%), Gaps = 2/117 (1%)
Query: 16 FDAKYGTTTGVSANDRAKTVLALACRDSKPEDFNRPGHIFPLKYREGGVLKRAGHTEASV 75
DA+ G TG+SA+DRA T+ LA S +DF RPGH+ PL+ ++GGVL+R GHTEA+V
Sbjct: 96 VDARNGIGTGISASDRATTMRLLADPTSVADDFTRPGHVVPLRAKDGGVLRRPGHTEAAV 155
Query: 76 DLAVLAGLEPVAVLCEIVD--DDGSMARLPKLRQFAQTENLKIISIADLIRYRRKRD 130
DLA +AGL+P +CEIV D+GSMA +LR FA L +I+IADLI +RRK +
Sbjct: 156 DLARMAGLQPAGAICEIVSQKDEGSMAHTDELRVFADEHGLALITIADLIEWRRKHE 212
>pdb|3MGZ|A Chain A, Crystal Structure Of Dhbps Domain Of Bi-Functional
DhbpsGTP Cyclohydrolase Ii From Mycobacterium
Tuberculosis At Ph 4.0
pdb|3MIO|A Chain A, Crystal Structure Of 3,4-Dihydroxy-2-Butanone 4-Phosphate
Synthase Domain From Mycobacterium Tuberculosis At Ph
6.00
pdb|3MIO|B Chain B, Crystal Structure Of 3,4-Dihydroxy-2-Butanone 4-Phosphate
Synthase Domain From Mycobacterium Tuberculosis At Ph
6.00
Length = 206
Score = 125 bits (313), Expect = 4e-29, Method: Compositional matrix adjust.
Identities = 63/117 (53%), Positives = 83/117 (70%), Gaps = 2/117 (1%)
Query: 16 FDAKYGTTTGVSANDRAKTVLALACRDSKPEDFNRPGHIFPLKYREGGVLKRAGHTEASV 75
DA+ G TG+SA+DRA T+ LA S +DF RPGH+ PL+ ++GGVL+R GHTEA+V
Sbjct: 90 VDARNGIGTGISASDRATTMRLLADPTSVADDFTRPGHVVPLRAKDGGVLRRPGHTEAAV 149
Query: 76 DLAVLAGLEPVAVLCEIVD--DDGSMARLPKLRQFAQTENLKIISIADLIRYRRKRD 130
DLA +AGL+P +CEIV D+GSMA +LR FA L +I+IADLI +RRK +
Sbjct: 150 DLARMAGLQPAGAICEIVSQKDEGSMAHTDELRVFADEHGLALITIADLIEWRRKHE 206
>pdb|1TKS|A Chain A, Crystal Structure Of 3,4-Dihydroxy-2-Butanone 4-Phosphate
Synthase Of Candida Albicans
pdb|1TKS|B Chain B, Crystal Structure Of 3,4-Dihydroxy-2-Butanone 4-Phosphate
Synthase Of Candida Albicans
pdb|1TKU|A Chain A, Crystal Structure Of 3,4-Dihydroxy-2-Butanone 4-Phosphate
Synthase Of Candida Albicans In Complex With
Ribulose-5-Phosphate
pdb|1TKU|B Chain B, Crystal Structure Of 3,4-Dihydroxy-2-Butanone 4-Phosphate
Synthase Of Candida Albicans In Complex With
Ribulose-5-Phosphate
pdb|2RIS|A Chain A, Crystal Structure Of 3,4-Dihydroxy-2-Butanone 4-Phosphate
Synthase Of Candida Albicans- Alternate Interpretation
pdb|2RIU|A Chain A, Alternative Models For Two Crystal Structures Of Candida
Albicans 3,4-Dihydroxy-2-Butanone 4-Phosphate Synthase-
Alternate Interpreation
Length = 204
Score = 113 bits (283), Expect = 1e-25, Method: Compositional matrix adjust.
Identities = 59/113 (52%), Positives = 77/113 (68%), Gaps = 1/113 (0%)
Query: 17 DAKYGTTTGVSANDRAKTVLALACRDSKPEDFNRPGHIFPLKYREGGVLKRAGHTEASVD 76
D GTTTG+SA+DRA T +LA +SKP+DF +PGHI PL+ G + KR GHTEA+V
Sbjct: 92 DFAEGTTTGISAHDRALTTRSLANPNSKPQDFIKPGHILPLRAVPGLLKKRRGHTEAAVQ 151
Query: 77 LAVLAGLEPVAVLCEIV-DDDGSMARLPKLRQFAQTENLKIISIADLIRYRRK 128
L+ LAGL+P V+CE+V D+DG M RL QF + +KII+I L+ Y K
Sbjct: 152 LSTLAGLQPAGVICELVRDEDGLMMRLDDCIQFGKKHGIKIININQLVEYISK 204
>pdb|1K49|A Chain A, Crystal Structure Of 3,4-Dihydroxy-2-Butanone 4-Phosphate
Synthase (Cation Free Form)
pdb|1K4I|A Chain A, Crystal Structure Of 3,4-Dihydroxy-2-Butanone 4-Phosphate
Synthase In Complex With Two Magnesium Ions
pdb|1K4L|A Chain A, Crystal Structure Of 3,4-Dihydroxy-2-Butanone 4-Phosphate
Synthase In Complex With Two Manganese Ions
pdb|1K4O|A Chain A, Crystal Structure Of 3,4-Dihydroxy-2-Butanone 4-Phosphate
Synthase In Complex With One Manganese, And A Glycerol
pdb|1K4P|A Chain A, Crystal Structure Of 3,4-Dihydroxy-2-Butanone 4-Phosphate
Synthase In Complex With Zinc Ions
Length = 233
Score = 93.6 bits (231), Expect = 2e-19, Method: Compositional matrix adjust.
Identities = 57/130 (43%), Positives = 75/130 (57%), Gaps = 12/130 (9%)
Query: 17 DAKY-GTTTGVSANDRAKTVLALACRDSKPEDFNRPGHIFPLKYREGGVLKRAGHTEASV 75
DA++ TTTG+SA+DRA LA D++P F RPGH+FPL+ GGV R GHTEA V
Sbjct: 99 DAEHPSTTTGISAHDRALACRMLAAPDAQPSHFRRPGHVFPLRAVAGGVRARRGHTEAGV 158
Query: 76 DLAVLAGLEPVAVLCEIVDDDGS-----------MARLPKLRQFAQTENLKIISIADLIR 124
+L LAG PVAV+ EIVDD M R + FA+ LK+ +I D+I
Sbjct: 159 ELCRLAGKRPVAVISEIVDDGQEVEGRAVRAAPGMLRGDECVAFARRWGLKVCTIEDMIA 218
Query: 125 YRRKRDRLVE 134
+ K + +E
Sbjct: 219 HVEKTEGKLE 228
>pdb|1PVW|A Chain A, 3,4-Dihydroxy-2-Butanone 4-Phosphate Synthase From M.
Jannaschii
pdb|1PVW|B Chain B, 3,4-Dihydroxy-2-Butanone 4-Phosphate Synthase From M.
Jannaschii
pdb|1PVW|C Chain C, 3,4-Dihydroxy-2-Butanone 4-Phosphate Synthase From M.
Jannaschii
Length = 227
Score = 74.7 bits (182), Expect = 7e-14, Method: Compositional matrix adjust.
Identities = 42/110 (38%), Positives = 65/110 (59%), Gaps = 6/110 (5%)
Query: 22 TTTGVSANDRAKTVLALA--CRDSKPEDFNR----PGHIFPLKYREGGVLKRAGHTEASV 75
T TG++ NDRA T+ LA ++ + DF + PGH+ L+ EG V R GHTE +V
Sbjct: 110 TFTGITDNDRAFTIKKLAELVKEGRFNDFGKEFRSPGHVTLLRAAEGLVKNRQGHTEMTV 169
Query: 76 DLAVLAGLEPVAVLCEIVDDDGSMARLPKLRQFAQTENLKIISIADLIRY 125
LA LA L P+ +CE++ DDG+ + +++A+ NL +S ++I Y
Sbjct: 170 ALAELANLVPITTICEMMGDDGNAMSKNETKRYAEKHNLIYLSGEEIINY 219
>pdb|1PVY|A Chain A, 3,4-Dihydroxy-2-Butanone 4-Phosphate Synthase From M.
Jannaschii In Complex With Ribulose 5-Phosphate
pdb|1PVY|B Chain B, 3,4-Dihydroxy-2-Butanone 4-Phosphate Synthase From M.
Jannaschii In Complex With Ribulose 5-Phosphate
pdb|1SNN|A Chain A, 3,4-dihydroxy-2-butanone 4-phosphate Synthase From
Methanococcus Jannaschii
pdb|1SNN|B Chain B, 3,4-dihydroxy-2-butanone 4-phosphate Synthase From
Methanococcus Jannaschii
Length = 227
Score = 71.2 bits (173), Expect = 8e-13, Method: Compositional matrix adjust.
Identities = 41/110 (37%), Positives = 64/110 (58%), Gaps = 6/110 (5%)
Query: 22 TTTGVSANDRAKTVLALA--CRDSKPEDFNR----PGHIFPLKYREGGVLKRAGHTEASV 75
T TG++ NDRA T+ LA ++ + DF + PG + L+ EG V R GHTE +V
Sbjct: 110 TFTGITDNDRAFTIKKLAELVKEGRFNDFGKEFRSPGSVTLLRAAEGLVKNRQGHTEMTV 169
Query: 76 DLAVLAGLEPVAVLCEIVDDDGSMARLPKLRQFAQTENLKIISIADLIRY 125
LA LA L P+ +CE++ DDG+ + +++A+ NL +S ++I Y
Sbjct: 170 ALAELANLVPITTICEMMGDDGNAMSKNETKRYAEKHNLIYLSGEEIINY 219
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.322 0.140 0.412
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 9,667,731
Number of Sequences: 62578
Number of extensions: 408011
Number of successful extensions: 931
Number of sequences better than 100.0: 14
Number of HSP's better than 100.0 without gapping: 12
Number of HSP's successfully gapped in prelim test: 2
Number of HSP's that attempted gapping in prelim test: 912
Number of HSP's gapped (non-prelim): 14
length of query: 355
length of database: 14,973,337
effective HSP length: 100
effective length of query: 255
effective length of database: 8,715,537
effective search space: 2222461935
effective search space used: 2222461935
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 52 (24.6 bits)