Query 018477
Match_columns 355
No_of_seqs 205 out of 1552
Neff 5.4
Searched_HMMs 46136
Date Fri Mar 29 09:21:07 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/018477.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/018477hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 PLN02831 Bifunctional GTP cycl 100.0 6E-112 1E-116 856.4 32.8 334 7-340 114-448 (450)
2 PRK09319 bifunctional 3,4-dihy 100.0 6E-112 1E-116 867.3 30.8 323 8-331 83-409 (555)
3 PRK09311 bifunctional 3,4-dihy 100.0 1E-110 2E-115 839.3 30.9 320 8-327 82-401 (402)
4 PRK09318 bifunctional 3,4-dihy 100.0 2E-110 5E-115 831.1 28.0 312 9-329 73-384 (387)
5 PRK12485 bifunctional 3,4-dihy 100.0 1.8E-97 4E-102 735.5 28.2 287 8-303 81-368 (369)
6 PRK14019 bifunctional 3,4-dihy 100.0 3.3E-96 7E-101 727.2 27.8 284 9-303 82-365 (367)
7 PRK09314 bifunctional 3,4-dihy 100.0 1.1E-90 2.4E-95 679.0 25.5 258 8-302 81-339 (339)
8 PRK08815 GTP cyclohydrolase; P 100.0 1E-90 2.2E-95 689.1 25.5 280 21-329 86-369 (375)
9 COG0807 RibA GTP cyclohydrolas 100.0 3.4E-70 7.4E-75 497.9 17.4 192 132-325 2-193 (193)
10 PRK00393 ribA GTP cyclohydrola 100.0 1.5E-61 3.2E-66 444.2 17.9 196 132-328 2-197 (197)
11 TIGR00505 ribA GTP cyclohydrol 100.0 2.5E-60 5.3E-65 434.1 17.6 191 134-325 1-191 (191)
12 PF00925 GTP_cyclohydro2: GTP 100.0 6E-60 1.3E-64 424.0 11.5 169 133-302 1-169 (169)
13 cd00641 GTP_cyclohydro2 GTP cy 100.0 3.3E-57 7.1E-62 413.9 17.1 193 132-325 1-193 (193)
14 COG0108 RibB 3,4-dihydroxy-2-b 100.0 4.4E-49 9.6E-54 359.1 12.6 124 7-131 80-203 (203)
15 PRK00910 ribB 3,4-dihydroxy-2- 100.0 4.3E-47 9.3E-52 352.0 12.9 123 8-130 92-214 (218)
16 PRK01792 ribB 3,4-dihydroxy-2- 100.0 1.4E-46 3E-51 347.8 13.4 123 7-129 90-212 (214)
17 KOG1284 Bifunctional GTP cyclo 100.0 1E-46 2.3E-51 363.9 6.7 210 10-219 145-357 (357)
18 PRK00014 ribB 3,4-dihydroxy-2- 100.0 1.4E-45 3E-50 343.6 13.4 123 8-130 96-218 (230)
19 PF00926 DHBP_synthase: 3,4-di 100.0 9.8E-46 2.1E-50 338.6 10.8 118 9-126 77-194 (194)
20 TIGR00506 ribB 3,4-dihydroxy-2 100.0 1.4E-44 3E-49 331.9 12.8 119 8-126 80-199 (199)
21 PRK03353 ribB 3,4-dihydroxy-2- 100.0 1.4E-43 3E-48 329.6 13.5 123 8-130 91-213 (217)
22 PRK07198 hypothetical protein; 100.0 1.5E-42 3.2E-47 342.1 13.2 253 51-319 108-394 (418)
23 PRK05773 3,4-dihydroxy-2-butan 100.0 3.4E-40 7.4E-45 306.5 11.8 113 10-126 93-217 (219)
24 KOG1284 Bifunctional GTP cyclo 99.7 2.8E-17 6E-22 160.0 2.5 189 139-329 68-325 (357)
25 PRK14481 dihydroxyacetone kina 88.7 1.6 3.5E-05 43.8 7.7 87 151-274 35-126 (331)
26 TIGR02361 dak_ATP dihydroxyace 88.1 1.5 3.2E-05 47.1 7.5 88 151-274 33-125 (574)
27 PRK11468 dihydroxyacetone kina 86.9 2.6 5.6E-05 42.8 8.0 88 151-274 34-126 (356)
28 TIGR02363 dhaK1 dihydroxyaceto 85.6 2.7 5.9E-05 42.2 7.3 88 151-274 35-127 (329)
29 PF02733 Dak1: Dak1 domain; I 84.1 0.98 2.1E-05 45.3 3.4 86 152-274 20-110 (325)
30 TIGR02362 dhaK1b probable dihy 83.4 3.6 7.8E-05 41.3 7.0 87 151-274 32-123 (326)
31 PRK14479 dihydroxyacetone kina 82.7 3.6 7.9E-05 44.2 7.2 87 151-274 34-125 (568)
32 PRK14483 DhaKLM operon coactiv 82.4 4.4 9.5E-05 40.8 7.2 87 151-274 34-125 (329)
33 PTZ00375 dihydroxyacetone kina 78.4 6.1 0.00013 42.7 7.2 87 151-274 37-128 (584)
34 KOG2426 Dihydroxyacetone kinas 59.7 53 0.0011 35.0 8.9 94 144-278 30-132 (582)
35 PF13344 Hydrolase_6: Haloacid 55.5 3.1 6.6E-05 34.2 -0.6 51 264-317 22-77 (101)
36 PF00332 Glyco_hydro_17: Glyco 49.0 13 0.00028 36.9 2.5 39 263-301 17-55 (310)
37 TIGR02990 ectoine_eutA ectoine 47.9 51 0.0011 31.5 6.3 92 200-304 58-156 (239)
38 PF13420 Acetyltransf_4: Acety 46.8 15 0.00032 30.9 2.3 36 266-301 103-141 (155)
39 COG4130 Predicted sugar epimer 45.6 46 0.00099 32.1 5.4 61 71-135 19-84 (272)
40 PF13263 PHP_C: PHP-associated 43.4 18 0.0004 26.5 2.0 20 103-122 5-24 (56)
41 PF07905 PucR: Purine cataboli 43.2 94 0.002 26.2 6.6 78 44-127 35-113 (123)
42 PRK14719 bifunctional RNAse/5- 39.4 39 0.00083 34.4 4.2 52 263-316 57-116 (360)
43 PLN02398 hydroxyacylglutathion 38.8 4.2E+02 0.0091 26.6 11.4 140 65-224 102-246 (329)
44 COG3473 Maleate cis-trans isom 38.0 32 0.00069 33.0 3.1 58 263-320 108-176 (238)
45 PRK04516 minC septum formation 36.5 1.4E+02 0.003 28.8 7.3 98 1-119 4-102 (235)
46 PF05198 IF3_N: Translation in 34.5 51 0.0011 26.2 3.3 32 89-120 14-48 (76)
47 cd03109 DTBS Dethiobiotin synt 32.2 99 0.0021 26.3 5.1 51 67-118 81-131 (134)
48 COG0223 Fmt Methionyl-tRNA for 29.8 97 0.0021 31.0 5.2 133 73-210 13-174 (307)
49 TIGR03413 GSH_gloB hydroxyacyl 28.7 5E+02 0.011 24.4 11.1 135 68-224 27-166 (248)
50 PF00107 ADH_zinc_N: Zinc-bind 27.6 29 0.00063 28.4 0.9 34 263-297 5-38 (130)
51 PF08369 PCP_red: Proto-chloro 27.5 75 0.0016 22.7 2.9 23 102-124 21-43 (45)
52 PRK11320 prpB 2-methylisocitra 27.5 5.6E+02 0.012 25.3 10.0 35 14-51 81-118 (292)
53 PRK07505 hypothetical protein; 26.0 78 0.0017 31.6 3.9 38 84-122 180-217 (402)
54 TIGR01822 2am3keto_CoA 2-amino 25.3 1.4E+02 0.0031 29.2 5.5 34 84-117 170-204 (393)
55 PRK13016 dihydroxy-acid dehydr 24.0 2.5E+02 0.0055 30.6 7.3 94 150-281 366-473 (577)
56 PRK06939 2-amino-3-ketobutyrat 23.8 1.6E+02 0.0035 28.7 5.5 38 84-122 174-212 (397)
57 PLN02946 cysteine-tRNA ligase 23.5 50 0.0011 35.6 2.1 62 19-83 208-276 (557)
58 COG0461 PyrE Orotate phosphori 23.0 1.9E+02 0.0042 27.2 5.6 49 73-128 130-181 (201)
59 PLN02880 tyrosine decarboxylas 22.7 1.6E+02 0.0036 30.9 5.6 52 66-117 221-273 (490)
60 PRK12418 cysteinyl-tRNA synthe 22.4 63 0.0014 33.2 2.4 37 43-82 170-212 (384)
61 PRK08574 cystathionine gamma-s 22.3 1.4E+02 0.0031 30.1 5.0 34 84-117 137-171 (385)
62 TIGR03447 mycothiol_MshC cyste 22.1 70 0.0015 33.2 2.7 37 43-82 197-239 (411)
63 cd03420 SirA_RHOD_Pry_redox Si 21.9 1.7E+02 0.0036 22.2 4.2 38 80-120 20-57 (69)
64 PF01212 Beta_elim_lyase: Beta 21.9 81 0.0018 30.8 3.0 70 53-126 94-172 (290)
65 KOG2931 Differentiation-relate 21.9 4.4E+02 0.0094 26.7 8.0 59 159-226 32-90 (326)
66 cd00291 SirA_YedF_YeeD SirA, Y 21.7 1.8E+02 0.0038 21.4 4.2 40 79-121 19-58 (69)
67 TIGR02379 ECA_wecE TDP-4-keto- 21.4 1.8E+02 0.0038 29.3 5.4 32 84-117 119-150 (376)
68 COG0399 WecE Predicted pyridox 21.2 1.1E+02 0.0025 31.3 4.0 31 85-117 123-153 (374)
69 PRK11706 TDP-4-oxo-6-deoxy-D-g 21.0 1.8E+02 0.004 28.8 5.4 32 84-117 119-150 (375)
70 cd03423 SirA SirA (also known 20.7 1.9E+02 0.0041 21.8 4.3 39 80-121 20-58 (69)
71 cd06454 KBL_like KBL_like; thi 20.0 1.4E+02 0.0031 28.4 4.3 34 84-117 132-166 (349)
72 cd00614 CGS_like CGS_like: Cys 20.0 1.8E+02 0.0038 28.9 5.0 34 84-117 125-159 (369)
No 1
>PLN02831 Bifunctional GTP cyclohydrolase II/ 3,4-dihydroxy-2-butanone-4-phosphate synthase
Probab=100.00 E-value=5.5e-112 Score=856.44 Aligned_cols=334 Identities=81% Similarity=1.257 Sum_probs=325.3
Q ss_pred eecCCceEEEEecCCCCCCCChHHHHHHHHHHHcCCCCCCccccCcccceeeeecCCcccccchhHHHHHHHHHhCCCCc
Q 018477 7 FFLSTKLFGFDAKYGTTTGVSANDRAKTVLALACRDSKPEDFNRPGHIFPLKYREGGVLKRAGHTEASVDLAVLAGLEPV 86 (355)
Q Consensus 7 ~~~~~ftvsvda~~g~~TGISa~dRa~Tir~la~~~~~~~df~~PGHv~Pl~a~~ggvl~R~GhtEaavdL~rlAgl~Pa 86 (355)
-+..+|||||||++|++|||||.|||+|||.||+++++|+||++|||||||++++||+++|+|||||||||||||||.|+
T Consensus 114 ~~~t~ftvsVd~~~g~~TGISa~dRa~Tir~lad~~~~~~df~~PGHvfPL~a~~ggvl~R~GhtEaavdLarlAgl~Pa 193 (450)
T PLN02831 114 KMATAFTVTVDAKHGTTTGVSASDRAKTILALASPDSKPEDFRRPGHIFPLRYREGGVLKRAGHTEAAVDLAVLAGLPPV 193 (450)
T ss_pred ccCCCceEEEecCCCcccccchHHHHHHHHHHhCcCCChhhcCCCCcccceeecccCccCCCChHHHHHHHHHHcCCCce
Confidence 34578999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred EEEEEEeCC-CCcccChhHHHHHHHhcCCeEEehhhHHHHHhhhhhhhhhcccccccCCcccEEEEEEEeCCCCceEEEE
Q 018477 87 AVLCEIVDD-DGSMARLPKLRQFAQTENLKIISIADLIRYRRKRDRLVELAAAAPIPTMWGPFKAHCYRSLLDGIEHIAM 165 (355)
Q Consensus 87 avi~ei~~~-dg~~a~~~~~~~fA~~h~L~ivti~dli~yr~~~E~lV~r~~~~~lpT~~G~F~~~~y~~~~~g~eH~AL 165 (355)
+|||||+++ ||+||+.+++.+||++|+||+++|+|||+||.++|++|+++++.++||.||+|++++|++..++.||+||
T Consensus 194 avi~Ei~~~~dG~m~~~~~~~~fA~~h~L~~v~i~dli~yr~~~e~lV~rv~~~~lpT~~G~F~~~~yr~~~~g~eHlAL 273 (450)
T PLN02831 194 GVLCEIVNDEDGSMARLPQLRKFAEEHGLKIISIADLIRYRRKREKLVERTAVARLPTKWGLFTAYCYRSKLDGIEHIAF 273 (450)
T ss_pred EEEEEeccCCCCCccChHHHHHHHHHcCCcEEEHHHHHHHHhhccccccccceeeeecCCCCEEEEEEEeCCCCeEEEEE
Confidence 999999995 8999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred EECcCCCCCcceEEeccCCccccccCCCCCCChHHHHHHHHHHHHcCCEEEEEEeCCCCCCcchHHHhhhhhcccCCCCc
Q 018477 166 VKGEIGDGQDILVRVHSECLTGDIFGSARCDCGNQLALAMKQIEAAGRGVLVYLRGHEGRGIGLGHKLRAYNLQDDGHDT 245 (355)
Q Consensus 166 v~Gdi~~~~~vlVRVHS~cltgDvfgs~~CdCg~qL~~Al~~Ia~~G~GVlvYLr~qEgrgiGl~~kl~ay~lq~~g~dt 245 (355)
++|++.+++||||||||+|+|||+|+|.+|||+|||++||++|+++|+||||||++||||||||.+|+++|.+|++|+||
T Consensus 274 v~Gd~~~~~~vLVRVHSec~tgDvfgs~rCdCg~qL~~Al~~I~~~G~GVlvYLr~qegrgigl~~Kl~ay~lq~~g~dt 353 (450)
T PLN02831 274 VKGDIGDGQDVLVRVHSECLTGDIFGSARCDCGNQLALAMQLIEKAGRGVLVYLRGHEGRGIGLGHKLRAYNLQDEGRDT 353 (450)
T ss_pred EeCCcCCCCCceEEEeccCCHHHHhcCCCCCCcchHHHHHHHHHHcCCEEEEEEcCCCcccchHHHHHHHHhcccccCcc
Confidence 99999888899999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred hhhhhhcCCCCCccChhHHHHHHHHcCCCeeeeccCCcccccccccCCceEEEEeecCCCCCcchHHHHHHHHHhcCCCC
Q 018477 246 VEANEELGLPVDSREYGIGAQILRDLGVRTMKLMTNNPSKYVGLKGYGLAIAGRIPLLTPITMENKRYLETKRAKMGHVY 325 (355)
Q Consensus 246 ~~An~~lg~~~D~RdygigAqILrdLGV~~irLLTNnP~K~~aL~g~GieV~ervpl~~~~~~~n~~yl~tK~~~~gH~l 325 (355)
++||..+|++.|+|+||+|||||++|||++||||||||+|+.+|++|||+|++++|++++++++|++||+||++||||+|
T Consensus 354 ~eAn~~lg~~~D~RdygigAqIL~dLGI~~irLLTNNp~K~~~L~~~GieVve~vp~~~~~~~~n~~Yl~tK~~k~gH~l 433 (450)
T PLN02831 354 VEANEELGLPVDSREYGIGAQILRDLGVRTMRLMTNNPAKYTGLKGYGLAVVGRVPLLTPITKENKRYLETKRTKMGHVY 433 (450)
T ss_pred hhhhhhccCcccceehHHHHHHHHHcCCCEEEECCCCHHHHHHHhhCCCEEEEEecccCCCChhhHHHHHHHHHHhCCcC
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCCCCCCCCCCcCCC
Q 018477 326 GLNSGSHGDGSISDD 340 (355)
Q Consensus 326 ~~~~~~~~~~~~~~~ 340 (355)
..+++.+..+.-+..
T Consensus 434 ~~~~~~~~~~~~~~~ 448 (450)
T PLN02831 434 GSDLGGHVSGLESAE 448 (450)
T ss_pred CCCCCCccccccccC
Confidence 999988887766544
No 2
>PRK09319 bifunctional 3,4-dihydroxy-2-butanone 4-phosphate synthase/GTP cyclohydrolase II/unknown domain fusion protein; Provisional
Probab=100.00 E-value=6e-112 Score=867.26 Aligned_cols=323 Identities=56% Similarity=0.922 Sum_probs=314.6
Q ss_pred ecCCceEEEEec--CCCCCCCChHHHHHHHHHHHcCCCCCCccccCcccceeeeecCCcccccchhHHHHHHHHHhCCCC
Q 018477 8 FLSTKLFGFDAK--YGTTTGVSANDRAKTVLALACRDSKPEDFNRPGHIFPLKYREGGVLKRAGHTEASVDLAVLAGLEP 85 (355)
Q Consensus 8 ~~~~ftvsvda~--~g~~TGISa~dRa~Tir~la~~~~~~~df~~PGHv~Pl~a~~ggvl~R~GhtEaavdL~rlAgl~P 85 (355)
...+|||||||+ +|++|||||.|||+|||+||+|+++|.||++|||||||++++|||+.|+||||||||||||||+.|
T Consensus 83 ~~taFtVsVDa~~~~g~tTGISA~DRa~TIr~ladp~~~~~Df~rPGHvfPL~A~~GGvl~R~GHTEAAVDLarLAGL~P 162 (555)
T PRK09319 83 NQTAFTVSIDAGPELGVSTGISAEDRARTIQVAINPDTKPEDLRRPGHIFPLRAKEGGVLKRAGHTEAAVDLARLAGLYP 162 (555)
T ss_pred CCceEEEEEeccccCCCCCCcCHHHHHHHHHHHhCCCCChhhcCCCCCccceeeccCCCCCCCChHHHHHHHHHHcCCCc
Confidence 346799999987 599999999999999999999999999999999999999999999999999999999999999999
Q ss_pred cEEEEEEeCCCCcccChhHHHHHHHhcCCeEEehhhHHHHHhhhhhhhhhcccccccCCcccEEEEEEEeCCCCceEEEE
Q 018477 86 VAVLCEIVDDDGSMARLPKLRQFAQTENLKIISIADLIRYRRKRDRLVELAAAAPIPTMWGPFKAHCYRSLLDGIEHIAM 165 (355)
Q Consensus 86 aavi~ei~~~dg~~a~~~~~~~fA~~h~L~ivti~dli~yr~~~E~lV~r~~~~~lpT~~G~F~~~~y~~~~~g~eH~AL 165 (355)
+||||||+++||+||+++++.+||++|+|++|+|+|||+||.++|++|++++++++||.||+|++++|++..++.||+||
T Consensus 163 aaVicEi~~~dG~mar~~~l~~fA~~h~L~iisi~dLi~yR~~~e~~V~rv~~~~lpT~~G~F~~~~yr~~~~g~eHvAL 242 (555)
T PRK09319 163 AGVICEIQNPDGSMARLPELKEYAKQHGLKLISIADLISYRLQNERFVYREAVAKLPSQFGQFQAYGYRNELDGSEHVAL 242 (555)
T ss_pred eEEEEEEecCCCCccCHHHHHHHHHHcCCcEEEhHHhHHHHhhccccceEEEEEeeecCCccEEEEEEEeCCCCeEEEEE
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred EECcCCC--CCcceEEeccCCccccccCCCCCCChHHHHHHHHHHHHcCCEEEEEEeCCCCCCcchHHHhhhhhcccCCC
Q 018477 166 VKGEIGD--GQDILVRVHSECLTGDIFGSARCDCGNQLALAMKQIEAAGRGVLVYLRGHEGRGIGLGHKLRAYNLQDDGH 243 (355)
Q Consensus 166 v~Gdi~~--~~~vlVRVHS~cltgDvfgs~~CdCg~qL~~Al~~Ia~~G~GVlvYLr~qEgrgiGl~~kl~ay~lq~~g~ 243 (355)
|+|++.. ++||||||||+|+|||+|||.+|||++||++||++|+++|+||||||+ ||||||||.||+++|.||++|+
T Consensus 243 vkGd~~~~~~~pvLVRVHSeClTGDvfgS~rCDCg~QL~~AL~~Ia~eG~GVlVYLr-qEGRGiGL~nKl~aY~LQd~G~ 321 (555)
T PRK09319 243 VKGDPANFKDEPVLVRMHSECLTGDAFGSLRCDCRMQLEAALKMIENEGEGVVVYLR-QEGRGIGLINKLKAYSLQDGGL 321 (555)
T ss_pred EcCCcccccCCCceEEEeccCcHHHHhcCCCCCCHHHHHHHHHHHHhcCCEEEEEeC-CCCcchhHHHHHHHHhhhhcCC
Confidence 9999963 579999999999999999999999999999999999999999999998 9999999999999999999999
Q ss_pred CchhhhhhcCCCCCccChhHHHHHHHHcCCCeeeeccCCcccccccccCCceEEEEeecCCCCCcchHHHHHHHHHhcCC
Q 018477 244 DTVEANEELGLPVDSREYGIGAQILRDLGVRTMKLMTNNPSKYVGLKGYGLAIAGRIPLLTPITMENKRYLETKRAKMGH 323 (355)
Q Consensus 244 dt~~An~~lg~~~D~RdygigAqILrdLGV~~irLLTNnP~K~~aL~g~GieV~ervpl~~~~~~~n~~yl~tK~~~~gH 323 (355)
||++||..+||+.|.|+||+|||||++|||++||||||||+|+.+|++|||+|++++|+++++|++|++||+||++||||
T Consensus 322 DTveAn~~lG~~~D~RdYgigAQIL~dLGI~kIrLLTNNP~Ki~~L~~~GIeVv~rvpl~~~~~~~n~~YL~tK~~k~gH 401 (555)
T PRK09319 322 DTVEANERLGFPADLRNYGVGAQILNDLGIKRLRLITNNPRKIAGLGGYGLEVVDRVPLLIEANDYNAEYLATKAEKLGH 401 (555)
T ss_pred ChhhhhhhcCCcccceehhHHHHHHHHcCCCEEEECCCCHHHHHHHHhCCCEEEEEecccCCCCcchhHHHHHHHHhhCC
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCCCCCCC
Q 018477 324 VYGLNSGS 331 (355)
Q Consensus 324 ~l~~~~~~ 331 (355)
+|..+.-.
T Consensus 402 ~l~~~~~~ 409 (555)
T PRK09319 402 LLLQTYLV 409 (555)
T ss_pred ccCCCccc
Confidence 99876633
No 3
>PRK09311 bifunctional 3,4-dihydroxy-2-butanone 4-phosphate synthase/GTP cyclohydrolase II protein; Provisional
Probab=100.00 E-value=1.1e-110 Score=839.33 Aligned_cols=320 Identities=61% Similarity=1.035 Sum_probs=314.5
Q ss_pred ecCCceEEEEecCCCCCCCChHHHHHHHHHHHcCCCCCCccccCcccceeeeecCCcccccchhHHHHHHHHHhCCCCcE
Q 018477 8 FLSTKLFGFDAKYGTTTGVSANDRAKTVLALACRDSKPEDFNRPGHIFPLKYREGGVLKRAGHTEASVDLAVLAGLEPVA 87 (355)
Q Consensus 8 ~~~~ftvsvda~~g~~TGISa~dRa~Tir~la~~~~~~~df~~PGHv~Pl~a~~ggvl~R~GhtEaavdL~rlAgl~Paa 87 (355)
...+|||||||++|++|||||.|||+|||+||+++++|+||++|||||||++++||+++|+||||||||||||||+.|+|
T Consensus 82 ~~t~ftvsvd~~~g~~TGISa~dRa~Tir~la~~~~~~~df~~PGHv~Pl~a~~ggvl~R~GhtEaavdL~~lAgl~Paa 161 (402)
T PRK09311 82 HGTAFTVSVDAANGVTTGISAADRATTIRLLADPASKPADFTRPGHVFPLRAKPGGVLRRAGHTEAAVDLARLAGLQPAG 161 (402)
T ss_pred CCCceEEEEEccCCcccccchhHHHHHHHHHhCccCChhhccCCCcccceeeccCCCccCCChHHHHHHHHHHcCCCceE
Confidence 45679999999889999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred EEEEEeCCCCcccChhHHHHHHHhcCCeEEehhhHHHHHhhhhhhhhhcccccccCCcccEEEEEEEeCCCCceEEEEEE
Q 018477 88 VLCEIVDDDGSMARLPKLRQFAQTENLKIISIADLIRYRRKRDRLVELAAAAPIPTMWGPFKAHCYRSLLDGIEHIAMVK 167 (355)
Q Consensus 88 vi~ei~~~dg~~a~~~~~~~fA~~h~L~ivti~dli~yr~~~E~lV~r~~~~~lpT~~G~F~~~~y~~~~~g~eH~ALv~ 167 (355)
|||||+++||+||+.+++++||++|+||+++++||++||.++|++|+++++.++||.||+|++++|++..++.||+|||+
T Consensus 162 vi~ei~~~~G~~~~~~~~~~fA~~~~l~~v~i~dli~yr~~~e~~v~~v~~~~lpt~~G~f~~~~y~~~~~~~eH~ALv~ 241 (402)
T PRK09311 162 VICEIVNEDGTMARVPELRVFADEHDLALITIADLIAYRRRHEKLVEREVEARLPTRFGEFRAIGYTSILDGKEHVALVK 241 (402)
T ss_pred EEEEEecCCCcccchHHHHHHHHHcCCeEEEeechHHHHhhccccceeEEEEEeecCCccEEEEEEEECCCCeEEEEEEe
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CcCCCCCcceEEeccCCccccccCCCCCCChHHHHHHHHHHHHcCCEEEEEEeCCCCCCcchHHHhhhhhcccCCCCchh
Q 018477 168 GEIGDGQDILVRVHSECLTGDIFGSARCDCGNQLALAMKQIEAAGRGVLVYLRGHEGRGIGLGHKLRAYNLQDDGHDTVE 247 (355)
Q Consensus 168 Gdi~~~~~vlVRVHS~cltgDvfgs~~CdCg~qL~~Al~~Ia~~G~GVlvYLr~qEgrgiGl~~kl~ay~lq~~g~dt~~ 247 (355)
|++.+++||||||||+|+|||+|+|.+|||+|||++||++|+++|+||||||++|||||+||.+|+++|.+|++|+||++
T Consensus 242 Gd~~~~~~vlVRVHs~c~tgDvfgs~~cdc~~qL~~Al~~I~~eG~GvlvyL~~qegrg~gl~~Kl~ay~lq~~g~dt~~ 321 (402)
T PRK09311 242 GDIGDGEDVLVRVHSECLTGDVFGSRRCDCGPQLDAALAQIAEEGRGVVLYMRGQEGRGIGLLHKLRAYQLQDEGYDTVD 321 (402)
T ss_pred CCCCCCCceeEEEeccCCHHHHhcCCCCCCcchHHHHHHHHHHcCCEEEEEEecCCcccchHHHHHHHHhhhhcCCChhh
Confidence 99988889999999999999999999999999999999999999999999998899999999999999999999999999
Q ss_pred hhhhcCCCCCccChhHHHHHHHHcCCCeeeeccCCcccccccccCCceEEEEeecCCCCCcchHHHHHHHHHhcCCCCCC
Q 018477 248 ANEELGLPVDSREYGIGAQILRDLGVRTMKLMTNNPSKYVGLKGYGLAIAGRIPLLTPITMENKRYLETKRAKMGHVYGL 327 (355)
Q Consensus 248 An~~lg~~~D~RdygigAqILrdLGV~~irLLTNnP~K~~aL~g~GieV~ervpl~~~~~~~n~~yl~tK~~~~gH~l~~ 327 (355)
||..+|++.|+|+||+|||||++|||++||||||||+|+.+|++|||+|++++|+++.+|++|.+||+||++||||+|++
T Consensus 322 an~~lg~~~D~Rdyg~gaqIL~~LGv~~irLLTnnp~K~~~L~~~GieV~~~v~~~~~~~~~n~~yl~tK~~~~gH~l~~ 401 (402)
T PRK09311 322 ANLKLGFPADARDYGIGAQILVDLGVRSMRLLTNNPRKIAGLQGYGLHVTERVPLPVRANEENERYLRTKRDRMGHDLDL 401 (402)
T ss_pred hhhhcCCCccceehhHHHHHHHHcCCCEEEECCCCHHHHHHHhhCCCEEEEEeccCCCCChhhHHHHHHHHHhccCCCCC
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999864
No 4
>PRK09318 bifunctional 3,4-dihydroxy-2-butanone 4-phosphate synthase/GTP cyclohydrolase II protein; Provisional
Probab=100.00 E-value=2.5e-110 Score=831.09 Aligned_cols=312 Identities=42% Similarity=0.695 Sum_probs=302.3
Q ss_pred cCCceEEEEecCCCCCCCChHHHHHHHHHHHcCCCCCCccccCcccceeeeecCCcccccchhHHHHHHHHHhCCCCcEE
Q 018477 9 LSTKLFGFDAKYGTTTGVSANDRAKTVLALACRDSKPEDFNRPGHIFPLKYREGGVLKRAGHTEASVDLAVLAGLEPVAV 88 (355)
Q Consensus 9 ~~~ftvsvda~~g~~TGISa~dRa~Tir~la~~~~~~~df~~PGHv~Pl~a~~ggvl~R~GhtEaavdL~rlAgl~Paav 88 (355)
..+|||||||+ ++|||||.|||+|||+||+ .++|.||+||||||||.+. ||++|+||||||||||+|||+.|+||
T Consensus 73 ~~aftvsvd~~--~~TGISa~DRa~Tir~la~-~~~~~df~~PGHvfpL~~~--gvl~R~GhTEaavdL~~lAGl~p~~v 147 (387)
T PRK09318 73 ETNFFIPVDYG--TGTGISASERALTCRKLAE-GLYVHEFRYPGHVTLLGGI--GFNRRRGHTEASLELSELLGFKRYAV 147 (387)
T ss_pred CCCEEEEEcCC--CCCCcCHHHHHHHHHHHHh-cCCHHHhcCCCccCCCCCc--cccccCCcHHHHHHHHHHcCCCceEE
Confidence 36899999995 3499999999999999999 6689999999999999875 79999999999999999999999999
Q ss_pred EEEEeCCCCcccChhHHHHHHHhcCCeEEehhhHHHHHhhhhhhhhhcccccccCCcccEEEEEEEeCCCCceEEEEEEC
Q 018477 89 LCEIVDDDGSMARLPKLRQFAQTENLKIISIADLIRYRRKRDRLVELAAAAPIPTMWGPFKAHCYRSLLDGIEHIAMVKG 168 (355)
Q Consensus 89 i~ei~~~dg~~a~~~~~~~fA~~h~L~ivti~dli~yr~~~E~lV~r~~~~~lpT~~G~F~~~~y~~~~~g~eH~ALv~G 168 (355)
|||||++||+||+++++++||++|+||+++|+|||+||.++|++|+++++.++||.||+|++++|++..++.||+|||+|
T Consensus 148 icei~~~dG~m~~~~~~~~fA~~h~l~~i~i~dli~~r~~~e~~V~~v~~~~lpT~~G~F~~~~y~~~~~g~eH~ALv~g 227 (387)
T PRK09318 148 IVEILDEKGDSHDLDYVLKLAEKFSLPVLEIDDVWKEFVRRKQLIKVKAEAKLPTDYGEFEIVSFENHLDGKEHVAIVKE 227 (387)
T ss_pred EEEEecCCCccccHHHHHHHHHHCCCcEEEHHHHHHHHHhccCceEEEEEEecccCcccEEEEEEEeCCCCcEEEEEEeC
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred cCCCCCcceEEeccCCccccccCCCCCCChHHHHHHHHHHHHcCCEEEEEEeCCCCCCcchHHHhhhhhcccCCCCchhh
Q 018477 169 EIGDGQDILVRVHSECLTGDIFGSARCDCGNQLALAMKQIEAAGRGVLVYLRGHEGRGIGLGHKLRAYNLQDDGHDTVEA 248 (355)
Q Consensus 169 di~~~~~vlVRVHS~cltgDvfgs~~CdCg~qL~~Al~~Ia~~G~GVlvYLr~qEgrgiGl~~kl~ay~lq~~g~dt~~A 248 (355)
++. +||||||||+|+|||+|||.+|||+|||+.||++|+++| ||||||+ |||||+||.+|+++|.+|++|+||++|
T Consensus 228 ~~~--~~vLVRVHSec~tgDvfgs~~CdCg~qL~~Al~~Ia~eG-GvlvYLr-qegrgigl~~Kl~ay~lq~~g~dt~eA 303 (387)
T PRK09318 228 PLG--EVPLVRIHSECVTGDTLSSLRCDCGSQLANFLRMISKEG-GILIYLR-QEGRGIGLSNKIKAYELQDKGLDTVEA 303 (387)
T ss_pred CCC--CCceEEEeecccHHHHhcCCCCCCcchHHHHHHHHHHcC-CEEEEEC-CCCcchhHHHHHHHHhhhhcCCCchhh
Confidence 985 389999999999999999999999999999999999999 9999998 999999999999999999999999999
Q ss_pred hhhcCCCCCccChhHHHHHHHHcCCCeeeeccCCcccccccccCCceEEEEeecCCCCCcchHHHHHHHHHhcCCCCCCC
Q 018477 249 NEELGLPVDSREYGIGAQILRDLGVRTMKLMTNNPSKYVGLKGYGLAIAGRIPLLTPITMENKRYLETKRAKMGHVYGLN 328 (355)
Q Consensus 249 n~~lg~~~D~RdygigAqILrdLGV~~irLLTNnP~K~~aL~g~GieV~ervpl~~~~~~~n~~yl~tK~~~~gH~l~~~ 328 (355)
|..+||+.|+|+||+|||||++|||++||||||||+|+.+|++|||+|++++|+++++|++|++||+||++||||+|+..
T Consensus 304 n~~lg~~~D~RdygigAqIL~dLGV~~irLLTNnp~K~~~L~~~GieV~~~vpl~~~~~~~n~~Yl~tK~~k~gH~l~~~ 383 (387)
T PRK09318 304 NRALGFKEDERDYAAAFQILKALGIEKVRLLTNNPRKTKALEKYGIEVVETVPLYGEVTKYNRFYLKTKVEKLGHKLELR 383 (387)
T ss_pred hhhcCCCccceeeeHHHHHHHHcCCCEEEECCCCHHHHHHHHhCCCEEEEEeccCCCCCchhHHHHHHHHHhhCCCcCcC
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999765
Q ss_pred C
Q 018477 329 S 329 (355)
Q Consensus 329 ~ 329 (355)
.
T Consensus 384 ~ 384 (387)
T PRK09318 384 E 384 (387)
T ss_pred C
Confidence 4
No 5
>PRK12485 bifunctional 3,4-dihydroxy-2-butanone 4-phosphate synthase/GTP cyclohydrolase II-like protein; Provisional
Probab=100.00 E-value=1.8e-97 Score=735.54 Aligned_cols=287 Identities=40% Similarity=0.642 Sum_probs=271.7
Q ss_pred ecCCceEEEEecCCCCCCCChHHHHHHHHHHHcCCCCCCccccCcccceeeeecCCcccccchhHHHHHHHHHhCCCCcE
Q 018477 8 FLSTKLFGFDAKYGTTTGVSANDRAKTVLALACRDSKPEDFNRPGHIFPLKYREGGVLKRAGHTEASVDLAVLAGLEPVA 87 (355)
Q Consensus 8 ~~~~ftvsvda~~g~~TGISa~dRa~Tir~la~~~~~~~df~~PGHv~Pl~a~~ggvl~R~GhtEaavdL~rlAgl~Paa 87 (355)
+..+|||||||++|++|||||.|||+|||+||+++++|.||++|||||||++++|||++|+||||||||||||||+.|++
T Consensus 81 ~~~~ftvsvda~~g~~TGISa~DRa~Tir~la~~~~~~~df~~PGHvfpl~a~~ggvl~R~GhtEaavdL~~lAgl~p~a 160 (369)
T PRK12485 81 FSTAFTVSIEAATGVTTGISAADRARTVAAAVAPNARPEDLVQPGHIFPLRAREGGVLTRAGHTEAGCDLARLAGFSPAS 160 (369)
T ss_pred CCCCEEEEEecCCCCCCCcCHHHHHHHHHHHhCCCCCHHHcCCCCeeCeEEecCCCCCCCCChHHHHHHHHHHcCCCceE
Confidence 34579999999989999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred EEEEEeCCCCcccChhHHHHHHHhcCCeEEehhhHHHHHhhhhhhhhhcccccccCCcccEEEEEEEeCCCCceEEEEEE
Q 018477 88 VLCEIVDDDGSMARLPKLRQFAQTENLKIISIADLIRYRRKRDRLVELAAAAPIPTMWGPFKAHCYRSLLDGIEHIAMVK 167 (355)
Q Consensus 88 vi~ei~~~dg~~a~~~~~~~fA~~h~L~ivti~dli~yr~~~E~lV~r~~~~~lpT~~G~F~~~~y~~~~~g~eH~ALv~ 167 (355)
||||||++||+||+++++.+||++|+||+++|+|||+||.++|++|++++++++||.||+|++++|++..++.||+||++
T Consensus 161 vi~ei~~~dg~m~~~~~~~~fA~~h~l~~i~i~~li~yr~~~e~~V~~v~~~~lpT~~G~f~~~~y~~~~~g~eHvALv~ 240 (369)
T PRK12485 161 VIVEVMNDDGTMARRPDLEVFAAKHGIKIGTIADLIHYRLSTEHTIKRIGERELPTVHGTFRLVTYEDRIEGGVHMAMVM 240 (369)
T ss_pred EEEEEecCCCCccChHHHHHHHHHcCCcEEEHHHHHHHHHhccccceeEEEEEeecCCCCEEEEEEEeCCCCeEEEEEEe
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CcCCCCCcceEEeccCCccccccCCCCC-CChHHHHHHHHHHHHcCCEEEEEEeCCCCCCcchHHHhhhhhcccCCCCch
Q 018477 168 GEIGDGQDILVRVHSECLTGDIFGSARC-DCGNQLALAMKQIEAAGRGVLVYLRGHEGRGIGLGHKLRAYNLQDDGHDTV 246 (355)
Q Consensus 168 Gdi~~~~~vlVRVHS~cltgDvfgs~~C-dCg~qL~~Al~~Ia~~G~GVlvYLr~qEgrgiGl~~kl~ay~lq~~g~dt~ 246 (355)
|++.+++||||||||+|+|||+|||.+| ||+|||+.||++|+++|+|||||||+|+ +++||.+|+++|..++.+++..
T Consensus 241 G~~~~~~~vlVRvHSecltgDv~gS~~c~d~g~qL~~Al~~I~~eG~GvlvYLr~~~-~~~gl~~kl~a~~~~~~~~~~~ 319 (369)
T PRK12485 241 GDIRREQPTLVRVHVIDPLRDLVGAEYAGPANWTLWAALQKVAEEGHGVVVVLANHE-SSQALLERIPQLTQPPRQYQRS 319 (369)
T ss_pred CCCCCCCCceEEEecccchhhhhcCCCCCccHHHHHHHHHHHHHhCCEEEEEecCCC-chhhHHHHHHHHHhHhhCCCcc
Confidence 9998888999999999999999999876 9999999999999999999999999555 5699999999998777666531
Q ss_pred hhhhhcCCCCCccChhHHHHHHHHcCCCeeeeccCCcccccccccCCceEEEEeecC
Q 018477 247 EANEELGLPVDSREYGIGAQILRDLGVRTMKLMTNNPSKYVGLKGYGLAIAGRIPLL 303 (355)
Q Consensus 247 ~An~~lg~~~D~RdygigAqILrdLGV~~irLLTNnP~K~~aL~g~GieV~ervpl~ 303 (355)
+ ..|+|+||+||||||+|||+||||| |||.|+.+|++|||+|++++|+.
T Consensus 320 d-------~r~~r~ygigAqILr~LGV~kirLL-nNP~K~~~L~~~GIeV~~~vp~~ 368 (369)
T PRK12485 320 Q-------SRIYSEVGTGAQILQDLGVGKLRHL-GPPLKYAGLTGYDLEVVESIPFP 368 (369)
T ss_pred c-------chhhhhhhHHHHHHHHcCCCEEEEC-CCchhhhhhhhCCcEEEEEecCC
Confidence 1 2357799999999999999999999 78999999999999999999974
No 6
>PRK14019 bifunctional 3,4-dihydroxy-2-butanone 4-phosphate synthase/GTP cyclohydrolase II-like protein; Provisional
Probab=100.00 E-value=3.3e-96 Score=727.22 Aligned_cols=284 Identities=47% Similarity=0.732 Sum_probs=276.5
Q ss_pred cCCceEEEEecCCCCCCCChHHHHHHHHHHHcCCCCCCccccCcccceeeeecCCcccccchhHHHHHHHHHhCCCCcEE
Q 018477 9 LSTKLFGFDAKYGTTTGVSANDRAKTVLALACRDSKPEDFNRPGHIFPLKYREGGVLKRAGHTEASVDLAVLAGLEPVAV 88 (355)
Q Consensus 9 ~~~ftvsvda~~g~~TGISa~dRa~Tir~la~~~~~~~df~~PGHv~Pl~a~~ggvl~R~GhtEaavdL~rlAgl~Paav 88 (355)
..+||||||++++++|||||.|||+|||.|++++++|.||++|||||||++++||+++|+|||||||||||+||+.|++|
T Consensus 82 ~~~ftvsvd~~~g~~TGISa~DRa~Tir~la~~~~~~~df~~PGHv~PL~a~~ggvl~R~GhtEaavdLarlAgl~Paav 161 (367)
T PRK14019 82 GTNFTVSIEAAEGVTTGISAADRARTIQAAVARDAKPEDIVQPGHIFPLMAQPGGVLVRAGHTEAGCDLAALAGLTPAAV 161 (367)
T ss_pred CCceEEEEEcCCCccceeecHHHHHHHHHHhcCCCChhhcCCCCCccceeecccCcccCCCchHHHHHHHHHcCCCceEE
Confidence 35799999999899999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred EEEEeCCCCcccChhHHHHHHHhcCCeEEehhhHHHHHhhhhhhhhhcccccccCCcccEEEEEEEeCCCCceEEEEEEC
Q 018477 89 LCEIVDDDGSMARLPKLRQFAQTENLKIISIADLIRYRRKRDRLVELAAAAPIPTMWGPFKAHCYRSLLDGIEHIAMVKG 168 (355)
Q Consensus 89 i~ei~~~dg~~a~~~~~~~fA~~h~L~ivti~dli~yr~~~E~lV~r~~~~~lpT~~G~F~~~~y~~~~~g~eH~ALv~G 168 (355)
||||+++||+||+.+++.+||++|+||+++++||++||.++|++|++++++++||.||+|++++|++..++.||+||++|
T Consensus 162 i~ei~~~~g~~~~~~~~~~fA~~h~L~~v~i~dli~yr~~~~~~v~~v~~~~lpt~~G~f~~~~y~~~~~~~eH~Alv~G 241 (367)
T PRK14019 162 ICEIMKDDGTMARLPDLEEFAKEHGLKIGTIADLIHYRSRTESIVERVAERPMQTAHGEFRLVAYRDKPSGSTHLALVKG 241 (367)
T ss_pred EEEEecCCCcccchHHHHHHHHHcCCcEEEHHHHHHHHhhcccccccceeEeeccCCccEEEEEEEeCCCCcEEEEEEeC
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred cCCCCCcceEEeccCCccccccCCCCCCChHHHHHHHHHHHHcCCEEEEEEeCCCCCCcchHHHhhhhhcccCCCCchhh
Q 018477 169 EIGDGQDILVRVHSECLTGDIFGSARCDCGNQLALAMKQIEAAGRGVLVYLRGHEGRGIGLGHKLRAYNLQDDGHDTVEA 248 (355)
Q Consensus 169 di~~~~~vlVRVHS~cltgDvfgs~~CdCg~qL~~Al~~Ia~~G~GVlvYLr~qEgrgiGl~~kl~ay~lq~~g~dt~~A 248 (355)
++.+++||||||||+|+|||+|+|.+|||+|||+.||++|+++|+||||||+ ||||||||.||+++ |++|
T Consensus 242 d~~~~~~vlVRvHS~c~tgDvfgs~~cdcg~qL~~al~~I~~~G~GvlvyL~-qegrgigl~~k~~~---------~~~a 311 (367)
T PRK14019 242 TICPDEETLVRVHEPLSVLDLLEVGQPTHSWSLDAAMAAIAEAGSGVVVLLN-CGDDGEHLLDRFRA---------EEAA 311 (367)
T ss_pred CcCCCCceeEEEeeccchHhHhcCCCCCcHHHHHHHHHHHHhcCCEEEEEEc-cCCchhhHHHhhhh---------hhhh
Confidence 9988889999999999999999999999999999999999999999999998 99999999999985 4568
Q ss_pred hhhcCCCCCccChhHHHHHHHHcCCCeeeeccCCcccccccccCCceEEEEeecC
Q 018477 249 NEELGLPVDSREYGIGAQILRDLGVRTMKLMTNNPSKYVGLKGYGLAIAGRIPLL 303 (355)
Q Consensus 249 n~~lg~~~D~RdygigAqILrdLGV~~irLLTNnP~K~~aL~g~GieV~ervpl~ 303 (355)
|..+|++.|+|+|++|||||++|||++||||| ||.|+.+|++|||+|++++|+.
T Consensus 312 n~~lg~~~d~R~y~igaqIL~~Lgv~~irLlT-np~K~~~L~~~Gi~V~~~~~~~ 365 (367)
T PRK14019 312 AALKRRPVDYRTYGIGAQILRDLGVGKMRLLS-SPRKFPSMSGFGLEVTGYVPMP 365 (367)
T ss_pred hhhcCCCcccceehHHHHHHHHcCCCeEEECC-CcHHHHhhhhCCcEEEEEecCC
Confidence 99999999999999999999999999999999 7999999999999999999864
No 7
>PRK09314 bifunctional 3,4-dihydroxy-2-butanone 4-phosphate synthase/GTP cyclohydrolase II protein; Provisional
Probab=100.00 E-value=1.1e-90 Score=678.97 Aligned_cols=258 Identities=42% Similarity=0.639 Sum_probs=245.8
Q ss_pred ecCCceEEEEecCCCCCCCChHHHHHHHHHHHcCCCCCCccccCcccceeeeecCCcccccchhHHHHHHHHHhCCCCcE
Q 018477 8 FLSTKLFGFDAKYGTTTGVSANDRAKTVLALACRDSKPEDFNRPGHIFPLKYREGGVLKRAGHTEASVDLAVLAGLEPVA 87 (355)
Q Consensus 8 ~~~~ftvsvda~~g~~TGISa~dRa~Tir~la~~~~~~~df~~PGHv~Pl~a~~ggvl~R~GhtEaavdL~rlAgl~Paa 87 (355)
...+|||||||+ +++|||||.|||+|||+||+++++|.||++|||||||++++|||++|+||||||||||+|||+.|++
T Consensus 81 ~~taFtvsVda~-~~~TGISA~DRa~Tir~la~~~~~~~df~~PGHvfPL~a~~gGvl~R~GhTEaavdLa~lAGl~p~~ 159 (339)
T PRK09314 81 HETAFTVSIDAK-EATTGISAFERDMTIKLLADDTSKPSDFVRPGHIFPLIAKDGGVLVRTGHTEGSVDLCKLAGLKPVA 159 (339)
T ss_pred CCCCeEEEEecC-CCCCCCCHHHHHHHHHHHhCCCCCHHHcCCCCceeeEEEcCCCcccCCCCCchhhHHHHHcCCCceE
Confidence 456899999998 4799999999999999999999999999999999999999999999999999999999999999999
Q ss_pred EEEEEeCCCCcccChhHHHHHHHhcCCeEEehhhHHHHHhhhhhhhhhcccccccCCcccEEEEEEEeCCCCceEEEEEE
Q 018477 88 VLCEIVDDDGSMARLPKLRQFAQTENLKIISIADLIRYRRKRDRLVELAAAAPIPTMWGPFKAHCYRSLLDGIEHIAMVK 167 (355)
Q Consensus 88 vi~ei~~~dg~~a~~~~~~~fA~~h~L~ivti~dli~yr~~~E~lV~r~~~~~lpT~~G~F~~~~y~~~~~g~eH~ALv~ 167 (355)
||||||++||+||+++++++||++|+||++||+|||+||.++|++|++++++++||.||+|++++|++. ++.||+|||+
T Consensus 160 vicEil~~dG~ma~~~~l~~fA~~h~l~~isi~dli~yr~~~e~~v~~~~~~~lpt~~g~f~~~~y~~~-~~~eHlALv~ 238 (339)
T PRK09314 160 VICEIMKEDGTMARRDDLEDFAKKHNLKMIYVSDLVEYRLKNESLIKEEEKEESEFAGFKAEKYTFLDH-LQNEHIAFKF 238 (339)
T ss_pred EEEEEecCCCCcccHHHHHHHHHHcCCcEEEHHHHHHHHHhcccceEEEEEEecCCCCccEEEEEEEcC-CCCEEEEEEe
Confidence 999999999999999999999999999999999999999999999999999999999999999999988 8999999999
Q ss_pred CcCCCCCcceEEeccCCccccccCCCCCCChHHHHHHHHHHHHcCCEEEEEEeCCCCCCcchHHHhhhhhcccCCCCchh
Q 018477 168 GEIGDGQDILVRVHSECLTGDIFGSARCDCGNQLALAMKQIEAAGRGVLVYLRGHEGRGIGLGHKLRAYNLQDDGHDTVE 247 (355)
Q Consensus 168 Gdi~~~~~vlVRVHS~cltgDvfgs~~CdCg~qL~~Al~~Ia~~G~GVlvYLr~qEgrgiGl~~kl~ay~lq~~g~dt~~ 247 (355)
|++.. ||||||||+|+|||+|++ ||.+||+.||++|+++| ||||||| ||||+
T Consensus 239 G~~~~--~vlVRVHSec~tgd~l~~---~~~~qL~~Al~~I~~eG-GvlvYLr-qegr~--------------------- 290 (339)
T PRK09314 239 GEIKL--TPNVKFHKIGSDFELLTS---DKFSELLKAIEYLKKNG-GVLIFLN-TESKE--------------------- 290 (339)
T ss_pred CCCCC--CccEEEeccCChHHhhCC---CcHHHHHHHHHHHHHcC-CEEEEEc-CCCCC---------------------
Confidence 99963 899999999999999985 55599999999999999 9999999 89874
Q ss_pred hhhhcCCCCCccChhHHHHHHHHcCCCeeeeccCC-cccccccccCCceEEEEeec
Q 018477 248 ANEELGLPVDSREYGIGAQILRDLGVRTMKLMTNN-PSKYVGLKGYGLAIAGRIPL 302 (355)
Q Consensus 248 An~~lg~~~D~RdygigAqILrdLGV~~irLLTNn-P~K~~aL~g~GieV~ervpl 302 (355)
+| ++|+||+|||||++|||++||||||| |+|+.+|++|||+|++++.+
T Consensus 291 an-------~~RdygigaqIL~dLGi~~irLlTnn~p~K~~~L~~~GieV~e~v~~ 339 (339)
T PRK09314 291 NN-------QVKDYGIGAQILKYLGIKDIKLLSSSEDKEYVGLSGFGLNIVETIEL 339 (339)
T ss_pred cc-------cccchhHHHHHHHHCCCCEEEECCCCChhhhhhHhhCCcEEEEEEeC
Confidence 22 58999999999999999999999999 99999999999999999864
No 8
>PRK08815 GTP cyclohydrolase; Provisional
Probab=100.00 E-value=1e-90 Score=689.11 Aligned_cols=280 Identities=35% Similarity=0.582 Sum_probs=267.1
Q ss_pred CCCCCCCh--HHHHHHHHHHHcCCCCCCccccCcccceeeeecCCcccccchhHHHHHHHHHhCCCCcEEEEEEeCCCCc
Q 018477 21 GTTTGVSA--NDRAKTVLALACRDSKPEDFNRPGHIFPLKYREGGVLKRAGHTEASVDLAVLAGLEPVAVLCEIVDDDGS 98 (355)
Q Consensus 21 g~~TGISa--~dRa~Tir~la~~~~~~~df~~PGHv~Pl~a~~ggvl~R~GhtEaavdL~rlAgl~Paavi~ei~~~dg~ 98 (355)
+.+||||+ .|||+||+.++++ +|.||++|||||| |||||||||||+.|+||||||+++|+
T Consensus 86 ~~t~~is~id~dRa~Ti~~~~~~--~~~d~~~PGHif~---------------EAavDLarLAGl~Paavi~Ei~~~~~- 147 (375)
T PRK08815 86 GARVALPDVDYDRLAALAYLRDG--RVPAPWAPGDALD---------------AGAVEIARLALLLPAMVAVPLPVHDE- 147 (375)
T ss_pred CcEEeEecchHHHHHHHHHHhcC--CccccCCCCCCcc---------------HHHHHHHHHcCCCceEEEEEEccCCC-
Confidence 44566664 7999999999999 5899999999997 99999999999999999999999743
Q ss_pred ccChhHHHHHHHhcCCeEEehhhHHHHHh-hhhhhhhhcccccccCCc-ccEEEEEEEeCCCCceEEEEEECcCCCCCcc
Q 018477 99 MARLPKLRQFAQTENLKIISIADLIRYRR-KRDRLVELAAAAPIPTMW-GPFKAHCYRSLLDGIEHIAMVKGEIGDGQDI 176 (355)
Q Consensus 99 ~a~~~~~~~fA~~h~L~ivti~dli~yr~-~~E~lV~r~~~~~lpT~~-G~F~~~~y~~~~~g~eH~ALv~Gdi~~~~~v 176 (355)
+ +|| +|+++||+|||+||. ++|++|++++++++||.| |+|++++|++..++.+|+|||+|++.+++||
T Consensus 148 -~------~fa---~L~i~tI~dLi~yR~~~~e~~v~~v~~~~lpt~~~g~f~~~~yr~~~~~~eH~ALv~G~~~~~~~v 217 (375)
T PRK08815 148 -A------AFA---GCQALALADLDAGCATSAAAGYELVTRTPVPLRGLGMTEFVVFRGGVAQRDQVAIVVGQPDLSSAV 217 (375)
T ss_pred -h------hhC---CCcEeeHHHHHHHHHhCcccceEEEEEEecccCCcCcEEEEEEEeCCCCcEEEEEEeCCCCCCCCc
Confidence 2 776 999999999999998 889999999999999996 9999999999999999999999999888899
Q ss_pred eEEeccCCccccccCCCCCCChHHHHHHHHHHHHcCCEEEEEEeCCCCCCcchHHHhhhhhcccCCCCchhhhhhcCCCC
Q 018477 177 LVRVHSECLTGDIFGSARCDCGNQLALAMKQIEAAGRGVLVYLRGHEGRGIGLGHKLRAYNLQDDGHDTVEANEELGLPV 256 (355)
Q Consensus 177 lVRVHS~cltgDvfgs~~CdCg~qL~~Al~~Ia~~G~GVlvYLr~qEgrgiGl~~kl~ay~lq~~g~dt~~An~~lg~~~ 256 (355)
||||||+|+|||+|||.+|||+|||++||++|+++|+||||||+ |||||+|+.+|+++|.+|++|+||++||..+|++.
T Consensus 218 lVRVHs~c~tgDvfgs~~cdc~~qL~~Al~~I~~~G~GVlvyL~-qegrg~gl~~kl~ay~lq~~g~dt~~a~~~lg~~~ 296 (375)
T PRK08815 218 PVRVHSSCLTGDLFGSLKCDCGDQLRHGLAKLKELGGGVLLYLD-QEGRGNGIAAKMRAYGYQHAGLDTIDADAQLGFGP 296 (375)
T ss_pred eEEEeccCcHHHHhcCCCCCCHHHHHHHHHHHHhhCCEEEEEEc-CCCccchHHHHHHHHhhhhccCCchhhhhhcCCCc
Confidence 99999999999999999999999999999999999999999997 99999999999999999999999999999999999
Q ss_pred CccChhHHHHHHHHcCCCeeeeccCCcccccccccCCceEEEEeecCCCCCcchHHHHHHHHHhcCCCCCCCC
Q 018477 257 DSREYGIGAQILRDLGVRTMKLMTNNPSKYVGLKGYGLAIAGRIPLLTPITMENKRYLETKRAKMGHVYGLNS 329 (355)
Q Consensus 257 D~RdygigAqILrdLGV~~irLLTNnP~K~~aL~g~GieV~ervpl~~~~~~~n~~yl~tK~~~~gH~l~~~~ 329 (355)
|.|+||+|||||++|||++||||||||+|+.+|++|||+|++++|+++..|++|.+||+||++||||+|+.+.
T Consensus 297 D~RdygigAQIL~dLGV~kirLLTnnp~K~~~L~g~gieVv~~vp~~~~~~~~n~~yl~tK~~~~gh~l~~~~ 369 (375)
T PRK08815 297 DERRYGSAVAMLRGLGITRVRLLTNNPTKAERLRAAGIEVEDRIRVTGRITAENERYLRTKADRAGHALDVDA 369 (375)
T ss_pred cceeeeHHHHHHHHcCCCeEEECCCCHHHHHHHHhCCCEEEEEeccCCCCCchhhhHHHHHHHHhCCCcCccc
Confidence 9999999999999999999999999999999999999999999999999999999999999999999997654
No 9
>COG0807 RibA GTP cyclohydrolase II [Coenzyme metabolism]
Probab=100.00 E-value=3.4e-70 Score=497.90 Aligned_cols=192 Identities=57% Similarity=1.010 Sum_probs=188.5
Q ss_pred hhhhcccccccCCcccEEEEEEEeCCCCceEEEEEECcCCCCCcceEEeccCCccccccCCCCCCChHHHHHHHHHHHHc
Q 018477 132 LVELAAAAPIPTMWGPFKAHCYRSLLDGIEHIAMVKGEIGDGQDILVRVHSECLTGDIFGSARCDCGNQLALAMKQIEAA 211 (355)
Q Consensus 132 lV~r~~~~~lpT~~G~F~~~~y~~~~~g~eH~ALv~Gdi~~~~~vlVRVHS~cltgDvfgs~~CdCg~qL~~Al~~Ia~~ 211 (355)
.++++.++++||+||+|++++|++..++.+|+|+|+|++.+ +||||||||||+|||+|+|.+|||++||+.||++|+++
T Consensus 2 ~ve~~~~a~lpt~~g~f~~~~y~~~~d~~~HlAlv~G~~~~-~~~lVRvHsEcltgDvl~s~rcdcg~ql~~al~~i~~~ 80 (193)
T COG0807 2 LVERVAEAKLPTELGEFRIVGYRDKIDGKEHLALVKGDISA-EPVLVRVHSECLTGDVLGSLRCDCGEQLEAALRRIAEE 80 (193)
T ss_pred ceeeeecccCCCCCceEEEEEEeccCCCceEEEEEecCCCC-CCceEEEeccccccchhcCCCCCcHHHHHHHHHHHhhc
Confidence 47889999999999999999999999999999999999975 79999999999999999999999999999999999999
Q ss_pred CCEEEEEEeCCCCCCcchHHHhhhhhcccCCCCchhhhhhcCCCCCccChhHHHHHHHHcCCCeeeeccCCccccccccc
Q 018477 212 GRGVLVYLRGHEGRGIGLGHKLRAYNLQDDGHDTVEANEELGLPVDSREYGIGAQILRDLGVRTMKLMTNNPSKYVGLKG 291 (355)
Q Consensus 212 G~GVlvYLr~qEgrgiGl~~kl~ay~lq~~g~dt~~An~~lg~~~D~RdygigAqILrdLGV~~irLLTNnP~K~~aL~g 291 (355)
|+||||||| ||||||||.+|++||.|||.|.||++||.++||+.|+|+||+|||||+||||++||||||||+|+.+|.+
T Consensus 81 g~GVvvYLr-qEGrgigl~~ki~ay~lqd~g~dtv~an~~lg~~~D~R~ygigAqIL~dLGI~~irLLtnnp~K~~~l~~ 159 (193)
T COG0807 81 GSGVVVYLR-QEGRGIGLLNKIRAYALQDKGADTVEANLALGFPADERDYGIGAQILKDLGIKKIRLLTNNPRKIYGLEG 159 (193)
T ss_pred CceEEEEee-cCCccchHHHHHHHHHhhhcCCChHHHHHhhcCCchHHHHHHHHHHHHHcCCcEEEEecCChHHHHHHHh
Confidence 999999999 9999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCceEEEEeecCCCCCcchHHHHHHHHHhcCCCC
Q 018477 292 YGLAIAGRIPLLTPITMENKRYLETKRAKMGHVY 325 (355)
Q Consensus 292 ~GieV~ervpl~~~~~~~n~~yl~tK~~~~gH~l 325 (355)
|||+|++|+|++...|++|+.||+||++||||+|
T Consensus 160 ~Gi~vverv~~~~~~~~~n~~yl~tk~~k~gh~~ 193 (193)
T COG0807 160 FGINVVERVPLIVGANPENEFYLKTKKEKMGHLL 193 (193)
T ss_pred CCceEEEEeecCCCCCcchHHHHHHHHHhhccCC
Confidence 9999999999999999999999999999999986
No 10
>PRK00393 ribA GTP cyclohydrolase II; Reviewed
Probab=100.00 E-value=1.5e-61 Score=444.18 Aligned_cols=196 Identities=49% Similarity=0.855 Sum_probs=189.0
Q ss_pred hhhhcccccccCCcccEEEEEEEeCCCCceEEEEEECcCCCCCcceEEeccCCccccccCCCCCCChHHHHHHHHHHHHc
Q 018477 132 LVELAAAAPIPTMWGPFKAHCYRSLLDGIEHIAMVKGEIGDGQDILVRVHSECLTGDIFGSARCDCGNQLALAMKQIEAA 211 (355)
Q Consensus 132 lV~r~~~~~lpT~~G~F~~~~y~~~~~g~eH~ALv~Gdi~~~~~vlVRVHS~cltgDvfgs~~CdCg~qL~~Al~~Ia~~ 211 (355)
.|+++++.++||.||+|++++|++..++.+|+|||+|+|.++.|||||||++|+++|+|++.+|||++||++||++|+++
T Consensus 2 ~v~~~~~~~~~t~~G~f~~~~y~d~~~~~~H~ALv~Gdi~~~~~vlVRVH~~~~~~Dvl~~~~~dc~~~L~~Al~~I~~~ 81 (197)
T PRK00393 2 QLKRVAEAKLPTPWGDFLMVGFEELATGKEHVALVFGDISGTEPVLVRVHSECLTGDALFSLRCDCGFQLEAALERIAEE 81 (197)
T ss_pred cEEEEEEEecccCCccEEEEEEEECCCCeEEEEEEECCCCCCCCceEEEecccCHHHHhcCCCCCCcchHHHHHHHHHHc
Confidence 47899999999999999999999999999999999999988889999999999999999999999999999999999999
Q ss_pred CCEEEEEEeCCCCCCcchHHHhhhhhcccCCCCchhhhhhcCCCCCccChhHHHHHHHHcCCCeeeeccCCccccccccc
Q 018477 212 GRGVLVYLRGHEGRGIGLGHKLRAYNLQDDGHDTVEANEELGLPVDSREYGIGAQILRDLGVRTMKLMTNNPSKYVGLKG 291 (355)
Q Consensus 212 G~GVlvYLr~qEgrgiGl~~kl~ay~lq~~g~dt~~An~~lg~~~D~RdygigAqILrdLGV~~irLLTNnP~K~~aL~g 291 (355)
|+||||||+ |+++++|+.+|+++|.+|+.+.+++++|..++++.|.|+||+|||||++|||++||||||||+|+.+|++
T Consensus 82 G~GVlVyL~-~~g~~~~l~~k~~~~~~~~~~~~~~~a~~~~~~~~d~R~yGiGAQIL~dLGV~~mrLLtn~~~k~~~L~g 160 (197)
T PRK00393 82 GRGILLYLR-QEGRGIGLLNKIRAYALQDQGLDTVEANHQLGFAADERDYTLAADMLKALGVKKVRLLTNNPKKVEALTE 160 (197)
T ss_pred CCEEEEEEc-CCCcchhHHHHHHHHhhhhccCcchhhhhhcCCCccceehhHHHHHHHHcCCCEEEECCCCHHHHHHHHh
Confidence 999999998 8999999999999999999888998898888999999999999999999999999999999999999999
Q ss_pred CCceEEEEeecCCCCCcchHHHHHHHHHhcCCCCCCC
Q 018477 292 YGLAIAGRIPLLTPITMENKRYLETKRAKMGHVYGLN 328 (355)
Q Consensus 292 ~GieV~ervpl~~~~~~~n~~yl~tK~~~~gH~l~~~ 328 (355)
|||||++++|++++.+++|.+||+||++||||.|+++
T Consensus 161 ~GleV~~~~~~~~~~~~~~~~y~~~k~~~~~h~l~~~ 197 (197)
T PRK00393 161 AGINIVERVPLIVGRNPHNEHYLKTKAEKMGHLLSLD 197 (197)
T ss_pred CCCEEEEEecccCCCCchhhHHHHHHHHhhcCCCCCC
Confidence 9999999999988999999999999999999999875
No 11
>TIGR00505 ribA GTP cyclohydrolase II. Several members of the family are bifunctional, involving both ribA and ribB function. In these cases, ribA tends to be on the C-terminal end of the protein and ribB tends to be on the N-terminal. The function of archaeal members of the family has not been demonstrated and is assigned tentatively.
Probab=100.00 E-value=2.5e-60 Score=434.12 Aligned_cols=191 Identities=53% Similarity=0.867 Sum_probs=184.5
Q ss_pred hhcccccccCCcccEEEEEEEeCCCCceEEEEEECcCCCCCcceEEeccCCccccccCCCCCCChHHHHHHHHHHHHcCC
Q 018477 134 ELAAAAPIPTMWGPFKAHCYRSLLDGIEHIAMVKGEIGDGQDILVRVHSECLTGDIFGSARCDCGNQLALAMKQIEAAGR 213 (355)
Q Consensus 134 ~r~~~~~lpT~~G~F~~~~y~~~~~g~eH~ALv~Gdi~~~~~vlVRVHS~cltgDvfgs~~CdCg~qL~~Al~~Ia~~G~ 213 (355)
+++++.++||.||+|++++|++..++.+|+|||+|++.++.|||||||++|.++|+|++.+|||++||++||++|+++|+
T Consensus 1 erv~e~~~~t~~G~f~~~~y~d~~~~~~H~ALvkG~i~~~~~~lVRvH~~~~~~Dvl~~~~~dc~~~L~~al~~i~~~G~ 80 (191)
T TIGR00505 1 ERVAEAKLPTPYGDFYMVGFEEPATGKDHVALVKGDISAHTDVLVRIHSECLTGDALHSLRCDCGFQLEAALKQIAEEGR 80 (191)
T ss_pred CeEEEEecccCceeEEEEEEEECCCCcEEEEEEeCCCCCCCCceEEEecccCHHHHhcCCCCCCCchHHHHHHHHHhcCC
Confidence 46789999999999999999999999999999999998888999999999999999999999999999999999999999
Q ss_pred EEEEEEeCCCCCCcchHHHhhhhhcccCCCCchhhhhhcCCCCCccChhHHHHHHHHcCCCeeeeccCCcccccccccCC
Q 018477 214 GVLVYLRGHEGRGIGLGHKLRAYNLQDDGHDTVEANEELGLPVDSREYGIGAQILRDLGVRTMKLMTNNPSKYVGLKGYG 293 (355)
Q Consensus 214 GVlvYLr~qEgrgiGl~~kl~ay~lq~~g~dt~~An~~lg~~~D~RdygigAqILrdLGV~~irLLTNnP~K~~aL~g~G 293 (355)
||||||+ |+++++|+.+|+++|.+|+.+.+|+++|..++++.|.|+||+|||||++|||++||||||||.|+.+|++||
T Consensus 81 GVlVyL~-~~~~~~~l~~k~~~~~~~~~~~~~~~a~~~~~~~~d~R~yGiGAQIL~dLGV~~~rLLtn~~~k~~~L~g~g 159 (191)
T TIGR00505 81 GVLIYLR-QEGRGIGLINKLRAYALQDKGYDTVQANLMLGFPADERDFSLCADILEDLGVKKVRLLTNNPKKIEILKKAG 159 (191)
T ss_pred EEEEEEC-CCCcchhHHHHHHHHhhhhcCCChhhhhhhccCcccceehhHHHHHHHHcCCCEEEECCCCHHHHHHHHhCC
Confidence 9999998 999999999999999999988899999988999999999999999999999999999999999999999999
Q ss_pred ceEEEEeecCCCCCcchHHHHHHHHHhcCCCC
Q 018477 294 LAIAGRIPLLTPITMENKRYLETKRAKMGHVY 325 (355)
Q Consensus 294 ieV~ervpl~~~~~~~n~~yl~tK~~~~gH~l 325 (355)
|+|++++|++...+++|.+||.||++||||.|
T Consensus 160 leVv~~~~~~~~~~~~~~~y~~~k~~~~~h~~ 191 (191)
T TIGR00505 160 INIVERVPLIVGRNENNEGYLDTKAEKMGHLL 191 (191)
T ss_pred CEEEEEeccccCCCcchHHHHHHHHHhhCCCC
Confidence 99999999888889999999999999999975
No 12
>PF00925 GTP_cyclohydro2: GTP cyclohydrolase II; InterPro: IPR000926 GTP cyclohydrolase II catalyses the first committed step in the biosynthesis of riboflavin. The enzyme converts GTP and water to formate, 2,5-diamino-6-hydroxy-4-(5-phosphoribosylamino)- pyrimidine and pyrophosphate, and requires magnesium as a cofactor. It is sometimes found as a bifunctional enzyme with 3,4-dihydroxy-2-butanone 4-phosphate synthase (DHBP_synthase) IPR000422 from INTERPRO. ; GO: 0003935 GTP cyclohydrolase II activity, 0009231 riboflavin biosynthetic process; PDB: 2BZ0_B 2BZ1_A.
Probab=100.00 E-value=6e-60 Score=423.95 Aligned_cols=169 Identities=66% Similarity=1.138 Sum_probs=137.7
Q ss_pred hhhcccccccCCcccEEEEEEEeCCCCceEEEEEECcCCCCCcceEEeccCCccccccCCCCCCChHHHHHHHHHHHHcC
Q 018477 133 VELAAAAPIPTMWGPFKAHCYRSLLDGIEHIAMVKGEIGDGQDILVRVHSECLTGDIFGSARCDCGNQLALAMKQIEAAG 212 (355)
Q Consensus 133 V~r~~~~~lpT~~G~F~~~~y~~~~~g~eH~ALv~Gdi~~~~~vlVRVHS~cltgDvfgs~~CdCg~qL~~Al~~Ia~~G 212 (355)
|+|+++.++||+||+|++++|++..++.+|+|||+|++.+++||||||||+|+++|+|++.+|||+|||++||++|+++|
T Consensus 1 Verv~~~~~~T~~G~f~~~~y~~~~~~~~H~ALv~G~~~~~~~~lVRvHs~~~~~Dvf~~~~~d~~~~L~~Am~~I~~~G 80 (169)
T PF00925_consen 1 VERVAECPLPTRFGEFRLHAYRDTIDGQEHLALVKGDIDPDEPVLVRVHSECLTGDVFGSLRCDCGWQLDKAMRRIAEEG 80 (169)
T ss_dssp -EEEEEEEEEETTEEEEEEEEEETTT--EEEEEEES---SSS-EEEEEEE--HHHHTS--SSSSHHHHHHHHHHHHHHHT
T ss_pred CEEEEEEEecCCCccEEEEEEEeCCCCeEEEEEEEecCCCCCCceEEecccccHhhhcCCCCCCCcHHHHHHHHHHHHcC
Confidence 68999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CEEEEEEeCCCCCCcchHHHhhhhhcccCCCCchhhhhhcCCCCCccChhHHHHHHHHcCCCeeeeccCCcccccccccC
Q 018477 213 RGVLVYLRGHEGRGIGLGHKLRAYNLQDDGHDTVEANEELGLPVDSREYGIGAQILRDLGVRTMKLMTNNPSKYVGLKGY 292 (355)
Q Consensus 213 ~GVlvYLr~qEgrgiGl~~kl~ay~lq~~g~dt~~An~~lg~~~D~RdygigAqILrdLGV~~irLLTNnP~K~~aL~g~ 292 (355)
+||||||+ ||+||+|+.+|+++|.+|++|.||++||..++++.|+|+||+|||||+||||++||||||||+|+.+|++|
T Consensus 81 ~GVlVyL~-~~~~g~~l~~kl~~~~~~~~g~~~~~a~~~~~~~~d~R~ygigaqIL~dLGV~~~rLLtnnp~k~~~L~g~ 159 (169)
T PF00925_consen 81 RGVLVYLR-QEGRGIGLLNKLRAYNLQDEGYDTVEANRALGFPEDLRDYGIGAQILRDLGVKKMRLLTNNPRKYVALEGF 159 (169)
T ss_dssp SEEEEEE---TTTTT-HHHHHHHHHHHTTS--HHHHHHCTT--S----THHHHHHHHHTT--SEEEE-S-HHHHHHHHHT
T ss_pred CEEEEEEc-CCCcchhHHHHHHHHHhhhcCCcchhhhhcccCccccccHHHHHHHHHHcCCCEEEECCCChhHHHHHhcC
Confidence 99999997 99999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CceEEEEeec
Q 018477 293 GLAIAGRIPL 302 (355)
Q Consensus 293 GieV~ervpl 302 (355)
||+|++++|+
T Consensus 160 gleV~~~vp~ 169 (169)
T PF00925_consen 160 GLEVVERVPL 169 (169)
T ss_dssp T--EEEEE--
T ss_pred CCEEEEEecC
Confidence 9999999996
No 13
>cd00641 GTP_cyclohydro2 GTP cyclohydrolase II (RibA). GTP cyclohydrolase II catalyzes the conversion of GTP to 2,5-diamino-6-ribosylamino-4(3H)-pyrimidinone 5' phosphate, formate, pyrophosphate (APy), and GMP in the biosynthetic pathway of riboflavin. Riboflavin is the precursor molecule for the synthesis of the coenzymes flavin mononucleotide (FMN) and flavin adenine dinucleotide (FAD) which are essential to cell metabolism. The enzyme is present in plants and numerous pathogenic bacteria, especially gram negative organisms, who are dependent on endogenous synthesis of the vitamin because they lack an appropriate uptake system. For animals and humans, which lack this biosynthetic pathway, riboflavin is the essential vitamin B2. GTP cyclohydrolase II requires magnesium ions for activity and has a bound catalytic zinc. The functionally active form is thought to be a homodimer. A paralogous protein is encoded in the genome of Streptomyces coelicolor, which converts GTP to 2-amino-5-fo
Probab=100.00 E-value=3.3e-57 Score=413.87 Aligned_cols=193 Identities=59% Similarity=1.024 Sum_probs=184.3
Q ss_pred hhhhcccccccCCcccEEEEEEEeCCCCceEEEEEECcCCCCCcceEEeccCCccccccCCCCCCChHHHHHHHHHHHHc
Q 018477 132 LVELAAAAPIPTMWGPFKAHCYRSLLDGIEHIAMVKGEIGDGQDILVRVHSECLTGDIFGSARCDCGNQLALAMKQIEAA 211 (355)
Q Consensus 132 lV~r~~~~~lpT~~G~F~~~~y~~~~~g~eH~ALv~Gdi~~~~~vlVRVHS~cltgDvfgs~~CdCg~qL~~Al~~Ia~~ 211 (355)
+|+++++.++||.||+|++++|++..++.+|+|||+|+|.+++|||||||++|+++|+|++.+|||++||++||++|+++
T Consensus 1 ~V~~~~~~~l~t~~G~f~~~~y~d~~~~~~H~ALv~Gdi~~~~~~lVRVH~~~~~~Dvl~~~~~~~~~~L~~Al~~Ia~~ 80 (193)
T cd00641 1 LVEKVAEAPLPTRFGDFRIVAFEDTDDGKEHVALVKGDPADGEPVLVRVHSECLTGDVFGSLRCDCGPQLEEALEEIAEE 80 (193)
T ss_pred CeEEEEEEEcccCcccEEEEEEEECCCCcEEEEEEeCCCCCCCCceEEEeccCCHHHHhcCCCCCCcchHHHHHHHHHHh
Confidence 37899999999999999999999999999999999999988889999999999999999999999999999999999999
Q ss_pred CCEEEEEEeCCCCCCcchHHHhhhhhcccCCCCchhhhhhcCCCCCccChhHHHHHHHHcCCCeeeeccCCccccccccc
Q 018477 212 GRGVLVYLRGHEGRGIGLGHKLRAYNLQDDGHDTVEANEELGLPVDSREYGIGAQILRDLGVRTMKLMTNNPSKYVGLKG 291 (355)
Q Consensus 212 G~GVlvYLr~qEgrgiGl~~kl~ay~lq~~g~dt~~An~~lg~~~D~RdygigAqILrdLGV~~irLLTNnP~K~~aL~g 291 (355)
|+||||||+ +++++.|+.+|+++|.+|+++.++.+++..++++.|.|+||+|||||++|||++||||||||.|+.+|+|
T Consensus 81 g~GVlV~l~-~~~~~~~~~~k~~~~~~~~~~~~~~~~~~~~~~~~d~R~yGiGAQIL~dLGv~~mrLLs~~~~k~~~L~g 159 (193)
T cd00641 81 GGGVLLYLR-QEGRGIGLANKLRAYALQDQGLDTVEANEALGFPADARDYGLAAQILRDLGIKSVRLLTNNPDKIDALEG 159 (193)
T ss_pred CCEEEEEEC-CCCcchhHHHHHHHHhhhhcCCChhhhhhhcCCCccccchHHHHHHHHHcCCCeEEECCCCHHHHHHHHh
Confidence 999999998 8989999999999999988888887777778888999999999999999999999999999999999999
Q ss_pred CCceEEEEeecCCCCCcchHHHHHHHHHhcCCCC
Q 018477 292 YGLAIAGRIPLLTPITMENKRYLETKRAKMGHVY 325 (355)
Q Consensus 292 ~GieV~ervpl~~~~~~~n~~yl~tK~~~~gH~l 325 (355)
|||+|++++|++.+.+++|.+||.+|++||+|++
T Consensus 160 fglevv~~~~~~~~~~~~~~~y~~~k~~~~~~~~ 193 (193)
T cd00641 160 YGIEVVERVPLEVEPNEENKGYLKTKRDKMGHLL 193 (193)
T ss_pred CCCEEEEEeccCCCCChhhHHHHHhhHHhhccCC
Confidence 9999999999887888999999999999999985
No 14
>COG0108 RibB 3,4-dihydroxy-2-butanone 4-phosphate synthase [Coenzyme metabolism]
Probab=100.00 E-value=4.4e-49 Score=359.10 Aligned_cols=124 Identities=56% Similarity=0.928 Sum_probs=120.3
Q ss_pred eecCCceEEEEecCCCCCCCChHHHHHHHHHHHcCCCCCCccccCcccceeeeecCCcccccchhHHHHHHHHHhCCCCc
Q 018477 7 FFLSTKLFGFDAKYGTTTGVSANDRAKTVLALACRDSKPEDFNRPGHIFPLKYREGGVLKRAGHTEASVDLAVLAGLEPV 86 (355)
Q Consensus 7 ~~~~~ftvsvda~~g~~TGISa~dRa~Tir~la~~~~~~~df~~PGHv~Pl~a~~ggvl~R~GhtEaavdL~rlAgl~Pa 86 (355)
-...+|||||||++ |+|||||.|||.|||.|++++++|+||++|||||||+|++|||++|+|||||+||||||||++|+
T Consensus 80 ~~~taFtVsVd~~~-t~TGISa~DRa~TIr~l~~~~~~~~df~~PGHVfpL~A~~ggVl~R~GHTEasVdLarlAGl~Pa 158 (203)
T COG0108 80 AHGTAFTVSVDARE-TTTGISAADRALTIRALADPGAKPSDFRRPGHVFPLRAKDGGVLERRGHTEAAVDLARLAGLKPA 158 (203)
T ss_pred CCCCceEEEEeccc-CcCCcCHHHHHHHHHHHhcCCCCHHHcCCCCCeeeeeeccCCeeccCChHHHHHHHHHHcCCCCc
Confidence 35689999999997 99999999999999999999999999999999999999999999999999999999999999999
Q ss_pred EEEEEEeCCCCcccChhHHHHHHHhcCCeEEehhhHHHHHhhhhh
Q 018477 87 AVLCEIVDDDGSMARLPKLRQFAQTENLKIISIADLIRYRRKRDR 131 (355)
Q Consensus 87 avi~ei~~~dg~~a~~~~~~~fA~~h~L~ivti~dli~yr~~~E~ 131 (355)
+||||||++||+||+.+++.+||++||||++||+|||+||.++|.
T Consensus 159 ~VicEi~~~dG~mar~~~~~~fa~~h~l~~iti~dli~yr~~~e~ 203 (203)
T COG0108 159 GVICEIMNDDGTMARLPELEEFAKEHGLPVITIEDLIEYRKKHER 203 (203)
T ss_pred EEEEEEeCCCccccChHHHHHHHHHcCCcEEEHHHHHHHHHhhcC
Confidence 999999999999999999999999999999999999999998763
No 15
>PRK00910 ribB 3,4-dihydroxy-2-butanone 4-phosphate synthase; Provisional
Probab=100.00 E-value=4.3e-47 Score=351.99 Aligned_cols=123 Identities=46% Similarity=0.817 Sum_probs=120.0
Q ss_pred ecCCceEEEEecCCCCCCCChHHHHHHHHHHHcCCCCCCccccCcccceeeeecCCcccccchhHHHHHHHHHhCCCCcE
Q 018477 8 FLSTKLFGFDAKYGTTTGVSANDRAKTVLALACRDSKPEDFNRPGHIFPLKYREGGVLKRAGHTEASVDLAVLAGLEPVA 87 (355)
Q Consensus 8 ~~~~ftvsvda~~g~~TGISa~dRa~Tir~la~~~~~~~df~~PGHv~Pl~a~~ggvl~R~GhtEaavdL~rlAgl~Paa 87 (355)
...+||||||+++|++|||||.|||+|||+||++.++|+||++|||||||++++|||++|+||||||||||+|||+.|++
T Consensus 92 ~~taFtvsVda~~g~~TGISA~DRa~Tir~la~~~~~~~df~rPGHvfPL~a~~gGvl~R~GHTEaavdLa~lAGl~p~~ 171 (218)
T PRK00910 92 NQTAFTVSIEAKHGVTTGVSAQDRVTTIKTAANPQAKPEDLARPGHVFPLRARAGGVLARRGHTEGTVDLMQMAGLQPAG 171 (218)
T ss_pred CCCCeEEEEecCCCCCCCcCHHHHHHHHHHHhCCCCCHHHcCCCCccceEEeCCCCEecCCCccHHHHHHHHHcCCCceE
Confidence 34679999999989999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred EEEEEeCCCCcccChhHHHHHHHhcCCeEEehhhHHHHHhhhh
Q 018477 88 VLCEIVDDDGSMARLPKLRQFAQTENLKIISIADLIRYRRKRD 130 (355)
Q Consensus 88 vi~ei~~~dg~~a~~~~~~~fA~~h~L~ivti~dli~yr~~~E 130 (355)
||||||++||+||+++++++||++|+||+++|+|||+||.++|
T Consensus 172 vicEil~~dG~ma~~~~l~~fA~~h~l~~isi~dli~yr~~~~ 214 (218)
T PRK00910 172 VLCELTNPDGTMAKTPEIIAFGKLHNMPVLTIEDMVMYRNQFD 214 (218)
T ss_pred EEEEEecCCCCcCCHHHHHHHHHHcCCcEEEHHHHHHHHHHhc
Confidence 9999999999999999999999999999999999999998887
No 16
>PRK01792 ribB 3,4-dihydroxy-2-butanone 4-phosphate synthase; Provisional
Probab=100.00 E-value=1.4e-46 Score=347.77 Aligned_cols=123 Identities=46% Similarity=0.777 Sum_probs=119.0
Q ss_pred eecCCceEEEEecCCCCCCCChHHHHHHHHHHHcCCCCCCccccCcccceeeeecCCcccccchhHHHHHHHHHhCCCCc
Q 018477 7 FFLSTKLFGFDAKYGTTTGVSANDRAKTVLALACRDSKPEDFNRPGHIFPLKYREGGVLKRAGHTEASVDLAVLAGLEPV 86 (355)
Q Consensus 7 ~~~~~ftvsvda~~g~~TGISa~dRa~Tir~la~~~~~~~df~~PGHv~Pl~a~~ggvl~R~GhtEaavdL~rlAgl~Pa 86 (355)
-...+|||||||++|++|||||.|||+|||.|+++.++|+||++|||||||++++|||++|+||||||||||||||+.|+
T Consensus 90 ~~~taFtvsVda~~g~~TGISA~DRa~Tir~la~~~~~~~df~~PGHvfPL~a~~gGvl~R~GHTEaavdLa~lAGl~p~ 169 (214)
T PRK01792 90 VNKTAFTVTIEAAKGVSTGVSAADRVTTIQAAIADNAKPSDLHRPGHVFPLRAANGGVLTRRGHTEAAVDLARLAGYKEA 169 (214)
T ss_pred CCCCCEEEEEecCCCCCCCcCHHHHHHHHHHHhCCCCCHHHcCCCCccceEEeccCCCccCCChHHHHHHHHHHcCCCce
Confidence 34578999999998999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred EEEEEEeCCCCcccChhHHHHHHHhcCCeEEehhhHHHHHhhh
Q 018477 87 AVLCEIVDDDGSMARLPKLRQFAQTENLKIISIADLIRYRRKR 129 (355)
Q Consensus 87 avi~ei~~~dg~~a~~~~~~~fA~~h~L~ivti~dli~yr~~~ 129 (355)
+||||||++||+||+++++++||++|+||+++|+|||+||.++
T Consensus 170 ~vicEil~~dG~ma~~~~~~~fA~~~~l~~isi~dli~yr~~~ 212 (214)
T PRK01792 170 GVICEITNDDGTMARTPEIVEFAKKFGYAVVTIEDLVEYRLKY 212 (214)
T ss_pred EEEEEEecCCCCccCHHHHHHHHHHcCCcEEEHHHHHHHHHHc
Confidence 9999999999999999999999999999999999999999754
No 17
>KOG1284 consensus Bifunctional GTP cyclohydrolase II/3,4-dihydroxy-2butanone-4-phosphate synthase [Coenzyme transport and metabolism]
Probab=100.00 E-value=1e-46 Score=363.91 Aligned_cols=210 Identities=54% Similarity=0.774 Sum_probs=204.9
Q ss_pred CCceEEEEecCCCCCCCChHHHHHHHHHHHc-CCCCCCccccCcccceeeee-cCCcccccchhHHHHHHHHHhCCCCcE
Q 018477 10 STKLFGFDAKYGTTTGVSANDRAKTVLALAC-RDSKPEDFNRPGHIFPLKYR-EGGVLKRAGHTEASVDLAVLAGLEPVA 87 (355)
Q Consensus 10 ~~ftvsvda~~g~~TGISa~dRa~Tir~la~-~~~~~~df~~PGHv~Pl~a~-~ggvl~R~GhtEaavdL~rlAgl~Paa 87 (355)
-+|||+||++++++||||+.||+.|++.|++ ....|+||.+|||++|++.+ +|||++|.|||||+||||.++|+.|.+
T Consensus 145 ~~~titvd~~~gt~TgVsahde~~T~~~l~s~~~~~pedf~rpghivpl~~~~~GGVl~r~ghtea~vdL~~l~gl~pl~ 224 (357)
T KOG1284|consen 145 TAFTITVDRAHGTVTGVSAHDEAYTGETLASARCDCPEDFDRPGHIVPLRYRLDGGVLERLGHTEAGVDLCELAGLYPLG 224 (357)
T ss_pred cceeEEEehhcCccceeEEecccccchhhcccccCChhhhccccccccceeecCCCeEEEccccccchhHHHHcCCCchh
Confidence 4799999999999999999999999999999 57889999999999999999 699999999999999999999999999
Q ss_pred EEEEEeCC-CCcccChhHHHHHHHhcCCeEEehhhHHHHHhhhhhhhhhcccccccCCcccEEEEEEEeCCCCceEEEEE
Q 018477 88 VLCEIVDD-DGSMARLPKLRQFAQTENLKIISIADLIRYRRKRDRLVELAAAAPIPTMWGPFKAHCYRSLLDGIEHIAMV 166 (355)
Q Consensus 88 vi~ei~~~-dg~~a~~~~~~~fA~~h~L~ivti~dli~yr~~~E~lV~r~~~~~lpT~~G~F~~~~y~~~~~g~eH~ALv 166 (355)
++||++++ +|.|++.++++.||.+|++|+++++|++.|+..+...|++++-++.||.|+.|..++|++..++.||++.+
T Consensus 225 ~l~elv~q~~g~m~~lpd~r~fa~~~~i~~~~i~dliryl~~r~~~v~~~s~~~~~~~~~~r~~~~~~s~~~~~E~i~~~ 304 (357)
T KOG1284|consen 225 VLGELVVQADGSMARLPDCRSFAAEHAIPLISIEDLIRYLTKRPEKVENISDAPQPTKCVERPAMCFKSWLDGKEGIASV 304 (357)
T ss_pred hhhhhhhcCCcccccCccHhhhhHhhcCChhhhhhHHHHHhcChhhhhcccCCCcCceeeeccccceeehhccccccccc
Confidence 99999988 89999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred ECcCCCCCcceEEeccCCccccccCCCCCCChHHHHHHHHHHHHcCCEEEEEE
Q 018477 167 KGEIGDGQDILVRVHSECLTGDIFGSARCDCGNQLALAMKQIEAAGRGVLVYL 219 (355)
Q Consensus 167 ~Gdi~~~~~vlVRVHS~cltgDvfgs~~CdCg~qL~~Al~~Ia~~G~GVlvYL 219 (355)
+|.+-....++||+|++|+++|+|++.+|+|+.||+-+|++|.++|+|+++||
T Consensus 305 ~g~v~~~~kie~r~h~e~l~~~i~~~~~~t~~sq~~~~~r~~e~~g~~~~~al 357 (357)
T KOG1284|consen 305 EGEVYLGTKIEVRGHLECLPDDIFGNRKRTGGSQLNYFMRTIEAAGRGVFVAL 357 (357)
T ss_pred ceEEeechhhhheeehhcccchhcCCcCCCCccHHHHHHHHHHhhcceeEEeC
Confidence 99998888899999999999999999999999999999999999999999996
No 18
>PRK00014 ribB 3,4-dihydroxy-2-butanone 4-phosphate synthase; Provisional
Probab=100.00 E-value=1.4e-45 Score=343.58 Aligned_cols=123 Identities=43% Similarity=0.702 Sum_probs=118.9
Q ss_pred ecCCceEEEEecCCCCCCCChHHHHHHHHHHHcCCCCCCccccCcccceeeeecCCcccccchhHHHHHHHHHhCCCCcE
Q 018477 8 FLSTKLFGFDAKYGTTTGVSANDRAKTVLALACRDSKPEDFNRPGHIFPLKYREGGVLKRAGHTEASVDLAVLAGLEPVA 87 (355)
Q Consensus 8 ~~~~ftvsvda~~g~~TGISa~dRa~Tir~la~~~~~~~df~~PGHv~Pl~a~~ggvl~R~GhtEaavdL~rlAgl~Paa 87 (355)
+..+||||||+++|++|||||.|||+|||.||+++++|+||++|||||||++++|||++|+||||||||||+|||+.|++
T Consensus 96 ~~t~ftvSVDa~~gttTGISA~DRa~Tir~La~~~~~~~DF~rPGHVfPL~a~~gGvl~R~GHTEAavdLa~lAGl~P~~ 175 (230)
T PRK00014 96 YSTAFTVSIEAREGVTTGVSAVDRVTTIRAAIAPGARSGDVVSPGHVFPLRAQPGGVLTRRGHTEGSVDLAALAGLRPAG 175 (230)
T ss_pred CCCCeEEEEEcCCCCCCCcCHHHHHHHHHHHhCCCCCHHHcCCCCccceEEecCCCEecCCCccHHHHHHHHHcCCCceE
Confidence 34679999999889999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred EEEEEeCCCCcccChhHHHHHHHhcCCeEEehhhHHHHHhhhh
Q 018477 88 VLCEIVDDDGSMARLPKLRQFAQTENLKIISIADLIRYRRKRD 130 (355)
Q Consensus 88 vi~ei~~~dg~~a~~~~~~~fA~~h~L~ivti~dli~yr~~~E 130 (355)
||||||++||+||+.+++++||++|+||++||+|||+|+.+++
T Consensus 176 vicEil~~dG~ma~~~~l~~fA~~~~l~iisi~dli~y~~~~~ 218 (230)
T PRK00014 176 VLCELMNADGTMMRGASLERYAAKEGLVALAIDELAAHLQARG 218 (230)
T ss_pred EEEEEeCCCCCccCHHHHHHHHHHcCCcEEEHHHHHHHHHHHh
Confidence 9999999999999999999999999999999999999998554
No 19
>PF00926 DHBP_synthase: 3,4-dihydroxy-2-butanone 4-phosphate synthase; InterPro: IPR000422 3,4-dihydroxy-2-butanone 4-phosphate synthase (4.1.99.12 from EC) (DHBP synthase) (RibB) catalyses the conversion of D-ribulose 5-phosphate to formate and 3,4-dihydroxy-2-butanone 4-phosphate, the latter serving as the biosynthetic precursor for the xylene ring of riboflavin []. In Photobacterium leiognathi, the riboflavin synthesis genes ribB (DHBP synthase), ribE (riboflavin synthase), ribH (lumazone synthase) and ribA (GTP cyclohydrolase II) all reside in the lux operon []. RibB is sometimes found as a bifunctional enzyme with GTP cyclohydrolase II that catalyses the first committed step in the biosynthesis of riboflavin (IPR000926 from INTERPRO). No sequences with significant homology to DHBP synthase are found in the metazoa.; GO: 0008686 3,4-dihydroxy-2-butanone-4-phosphate synthase activity, 0009231 riboflavin biosynthetic process; PDB: 1K4O_A 1K4L_A 1K4P_A 1K49_A 1K4I_A 1TKU_A 1TKS_B 2RIS_A 2RIU_A 3MIO_A ....
Probab=100.00 E-value=9.8e-46 Score=338.61 Aligned_cols=118 Identities=62% Similarity=0.940 Sum_probs=110.9
Q ss_pred cCCceEEEEecCCCCCCCChHHHHHHHHHHHcCCCCCCccccCcccceeeeecCCcccccchhHHHHHHHHHhCCCCcEE
Q 018477 9 LSTKLFGFDAKYGTTTGVSANDRAKTVLALACRDSKPEDFNRPGHIFPLKYREGGVLKRAGHTEASVDLAVLAGLEPVAV 88 (355)
Q Consensus 9 ~~~ftvsvda~~g~~TGISa~dRa~Tir~la~~~~~~~df~~PGHv~Pl~a~~ggvl~R~GhtEaavdL~rlAgl~Paav 88 (355)
..+|||||||+.|++|||||.|||+|||+||+++++|+||++|||||||++++||+++|+||||||||||+|||++|++|
T Consensus 77 ~~~ftvsVD~~~g~~TGISa~DRa~Tir~La~~~~~~~df~~PGHv~Pl~a~~gGvl~R~GhtEaavdLa~lAGl~p~av 156 (194)
T PF00926_consen 77 GTAFTVSVDAAKGTTTGISAADRARTIRALADPDAFPEDFVRPGHVFPLRARPGGVLERRGHTEAAVDLARLAGLSPVAV 156 (194)
T ss_dssp S--BBCEEEESSS-SSSSSHHHHHHHHHHHHSTTGHGGGEEEEEEEEEEEE-TTGGGTSSSHHHHHHHHHHHTTS-SBEE
T ss_pred CCCeeEeeecCCCCCCCcCHHHHHHHHHHHhCCCCCHHHcCCCCCCccceecCCcccCCCChHHHHHHHHHHhCCCCcEE
Confidence 57999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred EEEEeCCCCcccChhHHHHHHHhcCCeEEehhhHHHHH
Q 018477 89 LCEIVDDDGSMARLPKLRQFAQTENLKIISIADLIRYR 126 (355)
Q Consensus 89 i~ei~~~dg~~a~~~~~~~fA~~h~L~ivti~dli~yr 126 (355)
|||||++||+||+++++++||++|+||+++|+||++||
T Consensus 157 i~eil~~dG~~~~~~~~~~fA~~~~l~~vsi~dli~yr 194 (194)
T PF00926_consen 157 ICEILDDDGDMARRDELEEFAKKHGLPIVSIEDLIEYR 194 (194)
T ss_dssp EEEBBETTSSBHCHHHHHHHHHHTT-EEEEHHHHHHHH
T ss_pred EEEEeCCCCCcCCHHHHHHHHHHcCCcEEEHHHHHhhC
Confidence 99999999999999999999999999999999999997
No 20
>TIGR00506 ribB 3,4-dihydroxy-2-butanone 4-phosphate synthase. Several members of the family are bifunctional, involving both ribA and ribB function. In these cases, ribA tends to be on the C-terminal end of the protein and ribB tends to be on the N-terminal.
Probab=100.00 E-value=1.4e-44 Score=331.94 Aligned_cols=119 Identities=55% Similarity=0.879 Sum_probs=114.5
Q ss_pred ecCCceEEEEecCC-CCCCCChHHHHHHHHHHHcCCCCCCccccCcccceeeeecCCcccccchhHHHHHHHHHhCCCCc
Q 018477 8 FLSTKLFGFDAKYG-TTTGVSANDRAKTVLALACRDSKPEDFNRPGHIFPLKYREGGVLKRAGHTEASVDLAVLAGLEPV 86 (355)
Q Consensus 8 ~~~~ftvsvda~~g-~~TGISa~dRa~Tir~la~~~~~~~df~~PGHv~Pl~a~~ggvl~R~GhtEaavdL~rlAgl~Pa 86 (355)
...+||||||+.++ ++|||||.|||+|||.|+++.++|.||++|||||||++++|||++|+||||||||||+|||+.|+
T Consensus 80 ~~t~~t~sV~~~~~~~~TGISa~DRa~Tir~~a~~~~~~~df~~PGHvfPL~a~~gGvl~R~GhTEaavdL~~lAGl~p~ 159 (199)
T TIGR00506 80 SGTASTFTITVAHRKTFTGISANDRALTIRAALADVVKPSDFRRPGHVFPLRAADGGVLTRGGHTEASVDLAELAGLKPA 159 (199)
T ss_pred CCCceEEEEEeCCCCCCCCcCHHHHHHHHHHHhCCCCCHHHcCCCCccceEEeccCCCcCCCChHHHHHHHHHHcCCCce
Confidence 44578888887776 99999999999999999999999999999999999999999999999999999999999999999
Q ss_pred EEEEEEeCCCCcccChhHHHHHHHhcCCeEEehhhHHHHH
Q 018477 87 AVLCEIVDDDGSMARLPKLRQFAQTENLKIISIADLIRYR 126 (355)
Q Consensus 87 avi~ei~~~dg~~a~~~~~~~fA~~h~L~ivti~dli~yr 126 (355)
+||||||++||+||+.+++++||++|+||+++|+|||+||
T Consensus 160 ~vicEil~~dG~m~~~~~~~~fA~~~~l~~isi~dli~yr 199 (199)
T TIGR00506 160 GVICEMMNDDGTMARKPELMEYAKKHNLKLISIEDLIEYR 199 (199)
T ss_pred EEEEEEeCCCCCccCHHHHHHHHHHcCCcEEEHHHHHhhC
Confidence 9999999999999999999999999999999999999996
No 21
>PRK03353 ribB 3,4-dihydroxy-2-butanone 4-phosphate synthase; Provisional
Probab=100.00 E-value=1.4e-43 Score=329.63 Aligned_cols=123 Identities=48% Similarity=0.843 Sum_probs=120.0
Q ss_pred ecCCceEEEEecCCCCCCCChHHHHHHHHHHHcCCCCCCccccCcccceeeeecCCcccccchhHHHHHHHHHhCCCCcE
Q 018477 8 FLSTKLFGFDAKYGTTTGVSANDRAKTVLALACRDSKPEDFNRPGHIFPLKYREGGVLKRAGHTEASVDLAVLAGLEPVA 87 (355)
Q Consensus 8 ~~~~ftvsvda~~g~~TGISa~dRa~Tir~la~~~~~~~df~~PGHv~Pl~a~~ggvl~R~GhtEaavdL~rlAgl~Paa 87 (355)
...+||||||+++|++|||||.|||+|||.|+++.++|.||++|||||||++++||+++|+|||||||||||||||.|++
T Consensus 91 ~~~~ftvsVd~~~g~~TGISa~DRa~Tir~l~~~~~~~~df~~PGHv~pL~a~~ggvl~R~GhtEaavdLa~lAgl~P~a 170 (217)
T PRK03353 91 YGTAFTVTIEAAEGVTTGVSAADRITTIRAAIADGAKPSDLNRPGHVFPLRAQPGGVLTRRGHTEATIDLMTLAGLKPAG 170 (217)
T ss_pred CCCceEEEEECCCCCCCCcCHHHHHHHHHHHhCCCCCHHHcCCCCCccceeeccCCcccCCCchHHHHHHHHHcCCCceE
Confidence 34679999999989999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred EEEEEeCCCCcccChhHHHHHHHhcCCeEEehhhHHHHHhhhh
Q 018477 88 VLCEIVDDDGSMARLPKLRQFAQTENLKIISIADLIRYRRKRD 130 (355)
Q Consensus 88 vi~ei~~~dg~~a~~~~~~~fA~~h~L~ivti~dli~yr~~~E 130 (355)
|||||+++||+|++.+++.+||++|+||+++++|||+||.++|
T Consensus 171 vi~ei~~~~G~~~~~~~~~~fA~~~~l~~v~i~dli~~r~~~~ 213 (217)
T PRK03353 171 VLCELTNDDGTMARAPECIAFAKQHNMPVLTIEDLVAYRQAHE 213 (217)
T ss_pred EEEEeecCCCCcccHHHHHHHHHHcCCcEEEHHHHHHHHHHhh
Confidence 9999999999999999999999999999999999999999887
No 22
>PRK07198 hypothetical protein; Validated
Probab=100.00 E-value=1.5e-42 Score=342.13 Aligned_cols=253 Identities=25% Similarity=0.403 Sum_probs=188.4
Q ss_pred Ccccceee---eecCCcccccc--hhHHHHHHHHH------hCCCCcEEEEEEeCCCCcccChh-------HHHHHHHhc
Q 018477 51 PGHIFPLK---YREGGVLKRAG--HTEASVDLAVL------AGLEPVAVLCEIVDDDGSMARLP-------KLRQFAQTE 112 (355)
Q Consensus 51 PGHv~Pl~---a~~ggvl~R~G--htEaavdL~rl------Agl~Paavi~ei~~~dg~~a~~~-------~~~~fA~~h 112 (355)
.||..|-. .-+.|+--|+- -|.|-+.|.++ .-|.|-+-|| ++.|+..-.. +|.-.|+++
T Consensus 108 ~g~~~~~~~~~~~~~~~dirptia~t~a~~~~~e~~~~~~~g~l~~dg~i~---~~~g~~~vtk~av~pvwylpgva~rf 184 (418)
T PRK07198 108 WGHLVAEVFADEIAAGYDIRPTIAVTKAHINLPEIHDAIAAGRLKPDGKIL---LANGDVVVTKAAIEPVWYLPGVAERF 184 (418)
T ss_pred cccchHHHHHHHHhcCCCccchhhhhhhhcccHHHHHHHHcCCCCCCCeee---cCCCcEEEEEeeecccccccchHHHc
Confidence 56666542 12235556654 35555555443 3567888774 4566543222 567788888
Q ss_pred CCeEEehhhHHHHHhhhhhhhhhcccccccCCcccEEEEEEEeCCCCceEEEEEECcCCC----CCcceEEeccCCcccc
Q 018477 113 NLKIISIADLIRYRRKRDRLVELAAAAPIPTMWGPFKAHCYRSLLDGIEHIAMVKGEIGD----GQDILVRVHSECLTGD 188 (355)
Q Consensus 113 ~L~ivti~dli~yr~~~E~lV~r~~~~~lpT~~G~F~~~~y~~~~~g~eH~ALv~Gdi~~----~~~vlVRVHS~cltgD 188 (355)
|+.-. +|- -.+.|.+.- -.|--.-.-++++|+....+.+| +++|+++. ..||||||||+|++||
T Consensus 185 g~~e~---~lr------r~lfe~t~g-~~pel~t~~~~~vf~p~~gg~~~--~i~G~p~~~~d~~~PVLVRVHSeC~tgD 252 (418)
T PRK07198 185 GVSET---DLR------RTLFEQTGG-MFPELVTRPDLEVFLPPIGGQTV--YIFGDVTDLADPETELTCRVHDECNGSD 252 (418)
T ss_pred CCCHH---HHH------HHHHHHcCC-CCceeeeccceEEEcCCCCCeeE--EEECCcccccCCCCCceEEEeccccccc
Confidence 87522 111 123333321 12322223478999999999995 58999953 5689999999999999
Q ss_pred ccCCCCCCChHH----HHHHHHHHHHcCCEEEEEEeCCCCCCcchHHHhhhhhcccC--CCCchhhh----hhcCCCCCc
Q 018477 189 IFGSARCDCGNQ----LALAMKQIEAAGRGVLVYLRGHEGRGIGLGHKLRAYNLQDD--GHDTVEAN----EELGLPVDS 258 (355)
Q Consensus 189 vfgs~~CdCg~q----L~~Al~~Ia~~G~GVlvYLr~qEgrgiGl~~kl~ay~lq~~--g~dt~~An----~~lg~~~D~ 258 (355)
+|||.+|||+.| |++||++|+++|.||||||+ ||||++||.+|+++|.+|+. |.||+++| ..++...|+
T Consensus 253 VFGSlrCDCg~qL~~aLe~Amk~IaeeG~GVLVYLr-QEGRgiGLvnKl~aY~~qk~q~G~DT~da~~~rte~~~G~~D~ 331 (418)
T PRK07198 253 VFGSDICTCRPYLTHGIEECIRGAQRGGVGLIVYNR-KEGRALGEVTKFLVYNARKRQVGGDTAATYFARTECVAGVQDM 331 (418)
T ss_pred cccCCCCCchHHHHHHHHHHHHHHHhcCCeEEEEeC-CCCcchhHHHHHHHHhhhhhccCCchhhhhhcccccccCCCcc
Confidence 999999999988 57889999999999999998 99999999999999998753 79999975 223334699
Q ss_pred cChhHHHHHHHHcCCCee-eeccCCcccccccccCCceEEEEeecCCCCCcchHH-HHHHHHH
Q 018477 259 REYGIGAQILRDLGVRTM-KLMTNNPSKYVGLKGYGLAIAGRIPLLTPITMENKR-YLETKRA 319 (355)
Q Consensus 259 RdygigAqILrdLGV~~i-rLLTNnP~K~~aL~g~GieV~ervpl~~~~~~~n~~-yl~tK~~ 319 (355)
|+||+|||||++|||++| |||||||+|+.+|++|||||++++|++...++++.+ -+.+|..
T Consensus 332 RdyGlGAQILrdLGV~Km~RLLTNnp~K~~gL~GfGLEVVErVpl~~~~~p~d~~vei~ak~~ 394 (418)
T PRK07198 332 RFQELMPDVLHWLGIRRIHRLVSMSNMKYDAITGSGIEVGERVPIPDELIPADARVEIDAKKA 394 (418)
T ss_pred eehhHHHHHHHHhCCChhhhhcCCCHHHHHHHHhCCCEEEEEeccCcCCCccccccchhhhhh
Confidence 999999999999999999 999999999999999999999999998777776533 4455554
No 23
>PRK05773 3,4-dihydroxy-2-butanone 4-phosphate synthase; Validated
Probab=100.00 E-value=3.4e-40 Score=306.52 Aligned_cols=113 Identities=32% Similarity=0.431 Sum_probs=105.5
Q ss_pred CCceEEEEecCCCCCCCChHHHHHHHHHHHcC--------CCC----CCccccCcccceeeeecCCcccccchhHHHHHH
Q 018477 10 STKLFGFDAKYGTTTGVSANDRAKTVLALACR--------DSK----PEDFNRPGHIFPLKYREGGVLKRAGHTEASVDL 77 (355)
Q Consensus 10 ~~ftvsvda~~g~~TGISa~dRa~Tir~la~~--------~~~----~~df~~PGHv~Pl~a~~ggvl~R~GhtEaavdL 77 (355)
+.||||||| .+++|||||.|||+|||+||++ ... |+||++|||||||+++ ||++|+|||||||||
T Consensus 93 taFtvsVd~-~~~~TGISa~DRa~Tir~La~~~~~~~~~~~~~~~~~~~df~~PGHVfpL~a~--Gvl~R~GHTEasvdL 169 (219)
T PRK05773 93 PAFSLWVNH-VKTKTGISDYDRALTIRELHKVVELAKTNPEEAREEFYENFYSPGHVPILIGR--GIRERRGHTELSIAL 169 (219)
T ss_pred ceEEEEEcC-CCCCCCcCHHHHHHHHHHHHhhhhccccCccccccCCHHHcCCCCCcceeccC--ccccCCChhHHHHHH
Confidence 579999998 4999999999999999999983 222 8999999999999998 899999999999999
Q ss_pred HHHhCCCCcEEEEEEeCCCCcccChhHHHHHHHhcCCeEEehhhHHHHH
Q 018477 78 AVLAGLEPVAVLCEIVDDDGSMARLPKLRQFAQTENLKIISIADLIRYR 126 (355)
Q Consensus 78 ~rlAgl~Paavi~ei~~~dg~~a~~~~~~~fA~~h~L~ivti~dli~yr 126 (355)
|||||+.|++|||||||++ .||+++++++||++||||+++|+|||++.
T Consensus 170 a~lAGl~P~~vicEil~~~-~~~~~~~~~~fA~~~~l~~isi~dli~~~ 217 (219)
T PRK05773 170 AQAAGLEPSAVIAEMLDEK-LSLSKEKAKKIAKNLGFPLVEGKEIFKEV 217 (219)
T ss_pred HHHcCCCccEEEEEEeCCC-CCcCHHHHHHHHHHcCCcEEEHHHHHHHh
Confidence 9999999999999999974 59999999999999999999999999985
No 24
>KOG1284 consensus Bifunctional GTP cyclohydrolase II/3,4-dihydroxy-2butanone-4-phosphate synthase [Coenzyme transport and metabolism]
Probab=99.65 E-value=2.8e-17 Score=160.03 Aligned_cols=189 Identities=25% Similarity=0.289 Sum_probs=159.3
Q ss_pred cccc-CCcccEEEEEEEeCCCCceEEEEEECcC-----------------------------------------------
Q 018477 139 APIP-TMWGPFKAHCYRSLLDGIEHIAMVKGEI----------------------------------------------- 170 (355)
Q Consensus 139 ~~lp-T~~G~F~~~~y~~~~~g~eH~ALv~Gdi----------------------------------------------- 170 (355)
..+| +++|.|-++.|....++.+|++++.++.
T Consensus 68 ~ri~~~r~gk~~ivldd~~rdneg~L~~a~~~~~~~~~aF~vr~~~g~vd~~m~ga~~~~L~l~~~v~~~~~de~~~~~~ 147 (357)
T KOG1284|consen 68 ARIPTFRHGKFVIVLDDEDRDNEGDLIIAAGNVIREDMAFLVRHGSGIVDVMMRGAYLGRLHLPLMVFEKNDDETYETAF 147 (357)
T ss_pred hhhhcccCCcEEEEEecccccCCCCcceecccccchhhhhhhhcCCceechhhhhcccccccccccccccccccccccce
Confidence 3455 3468888888888888888888887764
Q ss_pred ------CCCCcceEEeccCCccccccCCCCCCChHHHHHHHHHHH---H-cCCEEEEEEeCCCCCCcchHHHhhhhhccc
Q 018477 171 ------GDGQDILVRVHSECLTGDIFGSARCDCGNQLALAMKQIE---A-AGRGVLVYLRGHEGRGIGLGHKLRAYNLQD 240 (355)
Q Consensus 171 ------~~~~~vlVRVHS~cltgDvfgs~~CdCg~qL~~Al~~Ia---~-~G~GVlvYLr~qEgrgiGl~~kl~ay~lq~ 240 (355)
+.+..+.||.|++|.|+-.++|.+|+|+.|++.+=..|. + .| |||.|++ |+++|++|..++.+|+||+
T Consensus 148 titvd~~~gt~TgVsahde~~T~~~l~s~~~~~pedf~rpghivpl~~~~~G-GVl~r~g-htea~vdL~~l~gl~pl~~ 225 (357)
T KOG1284|consen 148 TITVDRAHGTVTGVSAHDEAYTGETLASARCDCPEDFDRPGHIVPLRYRLDG-GVLERLG-HTEAGVDLCELAGLYPLGV 225 (357)
T ss_pred eEEEehhcCccceeEEecccccchhhcccccCChhhhccccccccceeecCC-CeEEEcc-ccccchhHHHHcCCCchhh
Confidence 223458999999999999999999999999999988887 6 47 9999997 9999999999999999999
Q ss_pred CCCCchhhhhhcCCCCCccChhHHHHHHHHcCCCeeeeccCCcccccccccCC--ceEEEEeecCCCCC---cc------
Q 018477 241 DGHDTVEANEELGLPVDSREYGIGAQILRDLGVRTMKLMTNNPSKYVGLKGYG--LAIAGRIPLLTPIT---ME------ 309 (355)
Q Consensus 241 ~g~dt~~An~~lg~~~D~RdygigAqILrdLGV~~irLLTNnP~K~~aL~g~G--ieV~ervpl~~~~~---~~------ 309 (355)
-|-+++++|..+-+.+|.|.|+..-.|+-+++..-+|+|+|||+|+...+..- ...++|+++..... .+
T Consensus 226 l~elv~q~~g~m~~lpd~r~fa~~~~i~~~~i~dliryl~~r~~~v~~~s~~~~~~~~~~r~~~~~~s~~~~~E~i~~~~ 305 (357)
T KOG1284|consen 226 LGELVVQADGSMARLPDCRSFAAEHAIPLISIEDLIRYLTKRPEKVENISDAPQPTKCVERPAMCFKSWLDGKEGIASVE 305 (357)
T ss_pred hhhhhhcCCcccccCccHhhhhHhhcCChhhhhhHHHHHhcChhhhhcccCCCcCceeeeccccceeehhcccccccccc
Confidence 99999999999999999999999999999999999999999999999887765 55677777542211 11
Q ss_pred hHHHHHHHHHhcCCCCCCCC
Q 018477 310 NKRYLETKRAKMGHVYGLNS 329 (355)
Q Consensus 310 n~~yl~tK~~~~gH~l~~~~ 329 (355)
-+-|+.+|..+|+|.+.++.
T Consensus 306 g~v~~~~kie~r~h~e~l~~ 325 (357)
T KOG1284|consen 306 GEVYLGTKIEVRGHLECLPD 325 (357)
T ss_pred eEEeechhhhheeehhcccc
Confidence 14499999999999986654
No 25
>PRK14481 dihydroxyacetone kinase subunit DhaK; Provisional
Probab=88.74 E-value=1.6 Score=43.85 Aligned_cols=87 Identities=20% Similarity=0.300 Sum_probs=61.7
Q ss_pred EEEEeCCCCceEEEEEECcCCCCCcceEE-----eccCCccccccCCCCCCChHHHHHHHHHHHHcCCEEEEEEeCCCCC
Q 018477 151 HCYRSLLDGIEHIAMVKGEIGDGQDILVR-----VHSECLTGDIFGSARCDCGNQLALAMKQIEAAGRGVLVYLRGHEGR 225 (355)
Q Consensus 151 ~~y~~~~~g~eH~ALv~Gdi~~~~~vlVR-----VHS~cltgDvfgs~~CdCg~qL~~Al~~Ia~~G~GVlvYLr~qEgr 225 (355)
..|+...+ ...++|+.|-=++.+|...= +=+.|..||+|-|.. ..|.-+|++.+.. |.|||+..-|-.
T Consensus 35 vv~~~~~~-~~kV~lIsGGGSGHEPah~GfVG~GmLdaav~G~VFaSPs---~~~Il~ai~av~~-~~GvL~iv~NYt-- 107 (331)
T PRK14481 35 VIVRKDKP-PGKVALVSGGGSGHEPAHAGFVGEGMLDAAVCGAVFTSPT---PDQILEAIKAVDT-GAGVLLIVKNYS-- 107 (331)
T ss_pred EEEecCCC-CCcEEEEecCCccccccccccccCCccceeeeccccCCCC---HHHHHHHHHhccC-CCCEEEEeCCcH--
Confidence 34554443 46789998765555552111 223488899999886 4799999998864 679998775333
Q ss_pred CcchHHHhhhhhcccCCCCchhhhhhcCCCCCccChhHHHHHHHHcCCC
Q 018477 226 GIGLGHKLRAYNLQDDGHDTVEANEELGLPVDSREYGIGAQILRDLGVR 274 (355)
Q Consensus 226 giGl~~kl~ay~lq~~g~dt~~An~~lg~~~D~RdygigAqILrdLGV~ 274 (355)
-|--+|++|++.++.-|++
T Consensus 108 ------------------------------GD~lnF~lA~E~a~~eGi~ 126 (331)
T PRK14481 108 ------------------------------GDVMNFEMAAELAEMEGIE 126 (331)
T ss_pred ------------------------------HHhccHHHHHHHHHhCCCC
Confidence 2677899999999999986
No 26
>TIGR02361 dak_ATP dihydroxyacetone kinase, ATP-dependent. This family consists of examples of the form of dihydroxyacetone kinase (also called glycerone kinase) that uses ATP (2.7.1.29) as the phosphate donor, rather than a phosphoprotein as in E. coli. This form is composed of a single chain with separable domains homologous to the K and L subunits of the E. coli enzyme, and is found in yeasts and other eukaryotes and in some bacteria, including Citrobacter freundii. The member from tomato has been shown to phosphorylate dihydroxyacetone, 3,4-dihydroxy-2-butanone, and some other aldoses and ketoses (PubMed:11985845).
Probab=88.08 E-value=1.5 Score=47.12 Aligned_cols=88 Identities=18% Similarity=0.369 Sum_probs=63.2
Q ss_pred EEEEeCCCCceEEEEEECcCCCCCcceEE-----eccCCccccccCCCCCCChHHHHHHHHHHHHcCCEEEEEEeCCCCC
Q 018477 151 HCYRSLLDGIEHIAMVKGEIGDGQDILVR-----VHSECLTGDIFGSARCDCGNQLALAMKQIEAAGRGVLVYLRGHEGR 225 (355)
Q Consensus 151 ~~y~~~~~g~eH~ALv~Gdi~~~~~vlVR-----VHS~cltgDvfgs~~CdCg~qL~~Al~~Ia~~G~GVlvYLr~qEgr 225 (355)
++|+...+ ...++||-|-=++.+|-..= +=+.+..||||-|.. ..|.-+|++.+...+.|||+.+-|-.
T Consensus 33 vv~~~~~~-~~kV~lisGGGSGHEPah~G~VG~Gml~aav~G~vFaSPs---~~~i~~ai~~~~~~~~Gvl~iv~NYt-- 106 (574)
T TIGR02361 33 VVYRRDLN-KDKVSLISGGGSGHEPAHAGFVGKGMLTAAVAGDVFASPS---TKQILAAIRAVVGSEAGTLLIVKNYT-- 106 (574)
T ss_pred EEEeCCCC-CCcEEEEecCCccccccccccccCCccceeeeccccCCCC---HHHHHHHHHHhcCCCCcEEEEecccH--
Confidence 45654443 56899998865555552111 223477899999876 57999999999876789998876333
Q ss_pred CcchHHHhhhhhcccCCCCchhhhhhcCCCCCccChhHHHHHHHHcCCC
Q 018477 226 GIGLGHKLRAYNLQDDGHDTVEANEELGLPVDSREYGIGAQILRDLGVR 274 (355)
Q Consensus 226 giGl~~kl~ay~lq~~g~dt~~An~~lg~~~D~RdygigAqILrdLGV~ 274 (355)
-|--+|+++++.++.-|++
T Consensus 107 ------------------------------GD~lnF~~A~e~a~~eg~~ 125 (574)
T TIGR02361 107 ------------------------------GDRLNFGLAAEKAKAEGYN 125 (574)
T ss_pred ------------------------------HHhhhHHHHHHHHHhCCCc
Confidence 2667899999999999985
No 27
>PRK11468 dihydroxyacetone kinase subunit DhaK; Provisional
Probab=86.91 E-value=2.6 Score=42.77 Aligned_cols=88 Identities=22% Similarity=0.361 Sum_probs=60.3
Q ss_pred EEEEeCCCCceEEEEEECcCCCCCcceEE-----eccCCccccccCCCCCCChHHHHHHHHHHHHcCCEEEEEEeCCCCC
Q 018477 151 HCYRSLLDGIEHIAMVKGEIGDGQDILVR-----VHSECLTGDIFGSARCDCGNQLALAMKQIEAAGRGVLVYLRGHEGR 225 (355)
Q Consensus 151 ~~y~~~~~g~eH~ALv~Gdi~~~~~vlVR-----VHS~cltgDvfgs~~CdCg~qL~~Al~~Ia~~G~GVlvYLr~qEgr 225 (355)
+.|+........++|+.|-=++.+|.-.= +=+.+..||+|-|.. ..|.-+|++.+. .|.|||+...|-.|
T Consensus 34 vv~~~~~~~~~kValIsGGGSGHEPah~GyVG~GmLdAAv~G~VFaSPs---~~qI~~ai~av~-~~~GvLlivkNYtG- 108 (356)
T PRK11468 34 YVTRADAPVAGKVALLSGGGSGHEPMHCGFVGQGMLDGACPGEIFTSPT---PDQMFECAMQVD-GGEGVLLIIKNYTG- 108 (356)
T ss_pred EEEeCCCCCCCcEEEEecCCccccccccceecCCcccceeeccccCCCC---HHHHHHHHHhhc-CCCCEEEEecccHH-
Confidence 34554433346789998765555552111 223477899999876 579999999865 56799988764332
Q ss_pred CcchHHHhhhhhcccCCCCchhhhhhcCCCCCccChhHHHHHHHHcCCC
Q 018477 226 GIGLGHKLRAYNLQDDGHDTVEANEELGLPVDSREYGIGAQILRDLGVR 274 (355)
Q Consensus 226 giGl~~kl~ay~lq~~g~dt~~An~~lg~~~D~RdygigAqILrdLGV~ 274 (355)
|--+|++|++.++.-|++
T Consensus 109 -------------------------------DvlNF~mAaE~a~~eGi~ 126 (356)
T PRK11468 109 -------------------------------DVLNFETATELLHDSGVK 126 (356)
T ss_pred -------------------------------hhccHHHHHHHHHhCCCc
Confidence 667889999999888885
No 28
>TIGR02363 dhaK1 dihydroxyacetone kinase, DhaK subunit. Two types of dihydroxyacetone kinase (glycerone kinase) are described. In yeast and a few bacteria, e.g. Citrobacter freundii, the enzyme is a single chain that uses ATP as phosphoryl donor and is designated EC 2.7.1.29. By contract, E. coli and many other bacterial species have a multisubunit form (EC 2.7.1.-) with a phosphoprotein donor related to PTS transport proteins. This family represents the DhaK subunit of the latter type of dihydroxyacetone kinase, but it specifically excludes the DhaK paralog DhaK2 (TIGR02362) found in the same operon as DhaK and DhaK in the Firmicutes.
Probab=85.60 E-value=2.7 Score=42.19 Aligned_cols=88 Identities=20% Similarity=0.335 Sum_probs=62.1
Q ss_pred EEEEeCCCCceEEEEEECcCCCCCcceEE-----eccCCccccccCCCCCCChHHHHHHHHHHHHcCCEEEEEEeCCCCC
Q 018477 151 HCYRSLLDGIEHIAMVKGEIGDGQDILVR-----VHSECLTGDIFGSARCDCGNQLALAMKQIEAAGRGVLVYLRGHEGR 225 (355)
Q Consensus 151 ~~y~~~~~g~eH~ALv~Gdi~~~~~vlVR-----VHS~cltgDvfgs~~CdCg~qL~~Al~~Ia~~G~GVlvYLr~qEgr 225 (355)
..|+...+....++|+.|-=++.+|...= +=+.|..||+|-|.. ..|.-+|++.+.. +.|||+...|-.
T Consensus 35 vv~~~~~~~~~kV~lIsGGGSGHEPah~GfVG~GmLdAav~G~VFaSPs---~~~I~~ai~av~~-~~GvL~iv~NYt-- 108 (329)
T TIGR02363 35 VIVRKDKKVNGKVALVSGGGSGHEPAHAGFVGYGMLDAAVPGEVFTSPT---PDQILEAIKAVDQ-GAGVLLIVKNYT-- 108 (329)
T ss_pred EEEeCCCCCCCCEEEEecCCccccccccccccCCccceeeeccccCCCC---HHHHHHHHHhccC-CCCEEEEeCCcH--
Confidence 45555444346789998765555552111 223478899999876 5789999988765 579998775332
Q ss_pred CcchHHHhhhhhcccCCCCchhhhhhcCCCCCccChhHHHHHHHHcCCC
Q 018477 226 GIGLGHKLRAYNLQDDGHDTVEANEELGLPVDSREYGIGAQILRDLGVR 274 (355)
Q Consensus 226 giGl~~kl~ay~lq~~g~dt~~An~~lg~~~D~RdygigAqILrdLGV~ 274 (355)
-|--+|++|++.++.-|++
T Consensus 109 ------------------------------GD~lnF~mA~E~a~~eGi~ 127 (329)
T TIGR02363 109 ------------------------------GDVMNFEMAAELAEDEGIK 127 (329)
T ss_pred ------------------------------HHhccHHHHHHHHHHcCCc
Confidence 2677899999999999985
No 29
>PF02733 Dak1: Dak1 domain; InterPro: IPR004006 Dihydroxyacetone kinase (glycerone kinase) 2.7.1.29 from EC catalyses the phosphorylation of glycerone in the presence of ATP to glycerone phosphate in the glycerol utilization pathway. This is the kinase domain of the dihydroxyacetone kinase family.; GO: 0004371 glycerone kinase activity, 0006071 glycerol metabolic process; PDB: 1UN8_A 1UN9_B 3PNM_A 1UOD_B 3PNO_D 3PNK_A 3PNQ_B 1OI2_B 1OI3_A 3PNL_A ....
Probab=84.06 E-value=0.98 Score=45.26 Aligned_cols=86 Identities=26% Similarity=0.516 Sum_probs=53.2
Q ss_pred EEEeCCCCceEEEEEECcCCCCCcce---E--EeccCCccccccCCCCCCChHHHHHHHHHHHHcCCEEEEEEeCCCCCC
Q 018477 152 CYRSLLDGIEHIAMVKGEIGDGQDIL---V--RVHSECLTGDIFGSARCDCGNQLALAMKQIEAAGRGVLVYLRGHEGRG 226 (355)
Q Consensus 152 ~y~~~~~g~eH~ALv~Gdi~~~~~vl---V--RVHS~cltgDvfgs~~CdCg~qL~~Al~~Ia~~G~GVlvYLr~qEgrg 226 (355)
+|+... ....++|+.|-=++.+|-. | =+=+.|..||+|-|.. ..|.-+|++.+ ..+.|||+.+.|-.|
T Consensus 20 v~~~~~-~~~kV~lIsGGGSGHEP~~~GfVG~GmLdAav~G~VFaSPs---~~qI~~ai~~~-~~~~Gvl~iv~NYtG-- 92 (325)
T PF02733_consen 20 VYRKDI-PKDKVALISGGGSGHEPAHAGFVGKGMLDAAVCGDVFASPS---ADQILAAIKAV-DSGKGVLLIVKNYTG-- 92 (325)
T ss_dssp EEETT---TTS-EEEEEEEESSTTTTGGGBSCTSBSEEEEEEETS------HHHHHHHHHHH--SSS-EEEEEESSHH--
T ss_pred EEeCCC-CCCCEEEEecCCCCcccchhhhccCCccceEeeCCCcCCCC---HHHHHHHHHhc-cCCCCEEEEEecchH--
Confidence 444443 5667899987544445421 1 1224477899999876 57999999998 567799988764332
Q ss_pred cchHHHhhhhhcccCCCCchhhhhhcCCCCCccChhHHHHHHHHcCCC
Q 018477 227 IGLGHKLRAYNLQDDGHDTVEANEELGLPVDSREYGIGAQILRDLGVR 274 (355)
Q Consensus 227 iGl~~kl~ay~lq~~g~dt~~An~~lg~~~D~RdygigAqILrdLGV~ 274 (355)
|--+|++|++.++.-|++
T Consensus 93 ------------------------------D~lNF~~A~E~a~~~Gi~ 110 (325)
T PF02733_consen 93 ------------------------------DVLNFGMAAEKARAEGIK 110 (325)
T ss_dssp ------------------------------HHHHHHHHHHHHHHTT--
T ss_pred ------------------------------HHhhHHHHHHHHHhCCCC
Confidence 556799999999999884
No 30
>TIGR02362 dhaK1b probable dihydroxyacetone kinase DhaK1b subunit. Two types of dihydroxyacetone kinase (glycerone kinase) are described. In yeast and a few bacteria, e.g. Citrobacter freundii, the enzyme is a single chain that uses ATP as phosphoryl donor and is designated EC 2.7.1.29. By contract, E. coli and many other bacterial species have a multisubunit form with a phosphoprotein donor related to PTS transport proteins. This family represents a protein, unique to the Firmicutes (low GC Gram-positives), that appears to be a divergent second copy of the K subunit of that complex; its gene is always found in operons with the other three proteins of the complex.
Probab=83.37 E-value=3.6 Score=41.32 Aligned_cols=87 Identities=24% Similarity=0.407 Sum_probs=61.1
Q ss_pred EEEEeCCCCceEEEEEECcCCCCCcceEE-----eccCCccccccCCCCCCChHHHHHHHHHHHHcCCEEEEEEeCCCCC
Q 018477 151 HCYRSLLDGIEHIAMVKGEIGDGQDILVR-----VHSECLTGDIFGSARCDCGNQLALAMKQIEAAGRGVLVYLRGHEGR 225 (355)
Q Consensus 151 ~~y~~~~~g~eH~ALv~Gdi~~~~~vlVR-----VHS~cltgDvfgs~~CdCg~qL~~Al~~Ia~~G~GVlvYLr~qEgr 225 (355)
..|+...+ ...++|+.|-=++.+|.-.= +=+.+..||+|-|.. ..|.-+|++.+.. |.|||+..-|-.
T Consensus 32 vv~~~~~~-~~kValIsGGGSGHEPah~GfVG~GmLdAav~G~VFaSPs---~~~I~~ai~av~~-~~GvL~ivkNYt-- 104 (326)
T TIGR02362 32 GIYDSNFD-DQQIPIISGGGSGHEPAHWGYVGEGMLSAAIMGDVFVPPT---AQDILEAIRQVDR-GKGVFVIIKNFE-- 104 (326)
T ss_pred EEEeCCCC-CCcEEEEecCCccccccccccccCCccceeEeccccCCCC---HHHHHHHHHhhcC-CCCEEEEeccCH--
Confidence 34454433 56899998765555552111 223477899999886 4799999999764 679998776333
Q ss_pred CcchHHHhhhhhcccCCCCchhhhhhcCCCCCccChhHHHHHHHHcCCC
Q 018477 226 GIGLGHKLRAYNLQDDGHDTVEANEELGLPVDSREYGIGAQILRDLGVR 274 (355)
Q Consensus 226 giGl~~kl~ay~lq~~g~dt~~An~~lg~~~D~RdygigAqILrdLGV~ 274 (355)
-|--+|++|++.++.-|++
T Consensus 105 ------------------------------GD~lNF~mA~E~a~~eGi~ 123 (326)
T TIGR02362 105 ------------------------------ADLSEFSQAIQQARQEGRQ 123 (326)
T ss_pred ------------------------------HHHhhHHHHHHHHHHcCCc
Confidence 2667899999999999985
No 31
>PRK14479 dihydroxyacetone kinase; Provisional
Probab=82.72 E-value=3.6 Score=44.19 Aligned_cols=87 Identities=21% Similarity=0.364 Sum_probs=60.9
Q ss_pred EEEEeCCCCceEEEEEECcCCCCCcceEE-----eccCCccccccCCCCCCChHHHHHHHHHHHHcCCEEEEEEeCCCCC
Q 018477 151 HCYRSLLDGIEHIAMVKGEIGDGQDILVR-----VHSECLTGDIFGSARCDCGNQLALAMKQIEAAGRGVLVYLRGHEGR 225 (355)
Q Consensus 151 ~~y~~~~~g~eH~ALv~Gdi~~~~~vlVR-----VHS~cltgDvfgs~~CdCg~qL~~Al~~Ia~~G~GVlvYLr~qEgr 225 (355)
..|+...+ ...++|+-|-=++.+|-..= +=+.|..||||-|.. ..|.-+|++.+. .|.|||+.+.|-.
T Consensus 34 vi~~~~~~-~~kV~lisGGGSGHEP~h~G~VG~Gml~aav~G~vFaSPs---~~~i~~ai~~v~-~~~Gvl~iv~NYt-- 106 (568)
T PRK14479 34 VVRRTPTP-EGKVAVVSGGGSGHEPAFAGYVGPGMLDAAVCGNVFTSPS---ADQVYAAIRAAD-GGAGVLLIVGNYA-- 106 (568)
T ss_pred EEEecCCC-CCceEEEecCCccccccccccccCCccceeeccCccCCCC---HHHHHHHHHhcc-CCCCEEEEeCCcH--
Confidence 34554333 46899998765555552111 223477899999876 579999998886 4569998876333
Q ss_pred CcchHHHhhhhhcccCCCCchhhhhhcCCCCCccChhHHHHHHHHcCCC
Q 018477 226 GIGLGHKLRAYNLQDDGHDTVEANEELGLPVDSREYGIGAQILRDLGVR 274 (355)
Q Consensus 226 giGl~~kl~ay~lq~~g~dt~~An~~lg~~~D~RdygigAqILrdLGV~ 274 (355)
-|--+|+++++.++.-|++
T Consensus 107 ------------------------------GD~lnF~~A~e~a~~~g~~ 125 (568)
T PRK14479 107 ------------------------------GDVMNFGLAAELARAEGID 125 (568)
T ss_pred ------------------------------HHHhhHHHHHHHHHhcCCc
Confidence 2667899999999999985
No 32
>PRK14483 DhaKLM operon coactivator DhaQ; Provisional
Probab=82.41 E-value=4.4 Score=40.75 Aligned_cols=87 Identities=21% Similarity=0.369 Sum_probs=60.8
Q ss_pred EEEEeCCCCceEEEEEECcCCCCCcceEE-----eccCCccccccCCCCCCChHHHHHHHHHHHHcCCEEEEEEeCCCCC
Q 018477 151 HCYRSLLDGIEHIAMVKGEIGDGQDILVR-----VHSECLTGDIFGSARCDCGNQLALAMKQIEAAGRGVLVYLRGHEGR 225 (355)
Q Consensus 151 ~~y~~~~~g~eH~ALv~Gdi~~~~~vlVR-----VHS~cltgDvfgs~~CdCg~qL~~Al~~Ia~~G~GVlvYLr~qEgr 225 (355)
+.|+.... ...++|+.|-=++.+|...= +=+.|..||+|-|.. ..|.-+|++.+.. |.|||+...|-.
T Consensus 34 vv~~~~~~-~~kV~lIsGGGSGHEPah~GyVG~GmLdAav~G~VFaSPs---~~qI~~ai~av~~-~~GvL~ivkNYt-- 106 (329)
T PRK14483 34 YVYDIEKD-DQLVPIISGGGSGHEPAHIGYVGKGMLTAAVNGSIFTPPT---AEQILAATRLVPK-GKGVFFIIKNFE-- 106 (329)
T ss_pred EEEeCCCC-CCcEEEEecCCccccccccccccCCccceeEeccccCCCC---HHHHHHHHHhhcC-CCCEEEEecccH--
Confidence 34554443 56899998765555552111 223478899999876 5799999988764 569998776333
Q ss_pred CcchHHHhhhhhcccCCCCchhhhhhcCCCCCccChhHHHHHHHHcCCC
Q 018477 226 GIGLGHKLRAYNLQDDGHDTVEANEELGLPVDSREYGIGAQILRDLGVR 274 (355)
Q Consensus 226 giGl~~kl~ay~lq~~g~dt~~An~~lg~~~D~RdygigAqILrdLGV~ 274 (355)
-|--+|++|++.++.-|++
T Consensus 107 ------------------------------GDvlnF~mA~E~a~~eGi~ 125 (329)
T PRK14483 107 ------------------------------ADVAEFSAAIQIARQEGRQ 125 (329)
T ss_pred ------------------------------HHhhhHHHHHHHHHhCCCc
Confidence 2667899999999998885
No 33
>PTZ00375 dihydroxyacetone kinase-like protein; Provisional
Probab=78.42 E-value=6.1 Score=42.67 Aligned_cols=87 Identities=17% Similarity=0.328 Sum_probs=60.6
Q ss_pred EEEEeCCCCceEEEEEECcCCCCCcceEE-----eccCCccccccCCCCCCChHHHHHHHHHHHHcCCEEEEEEeCCCCC
Q 018477 151 HCYRSLLDGIEHIAMVKGEIGDGQDILVR-----VHSECLTGDIFGSARCDCGNQLALAMKQIEAAGRGVLVYLRGHEGR 225 (355)
Q Consensus 151 ~~y~~~~~g~eH~ALv~Gdi~~~~~vlVR-----VHS~cltgDvfgs~~CdCg~qL~~Al~~Ia~~G~GVlvYLr~qEgr 225 (355)
++|+...+ ...++||-|-=++.+|.-.= +=+.+..||||-|.. ..|.-+|++.+. .|.|||+.+-|-.|
T Consensus 37 vv~~~~~~-~~kV~lisGGGSGHEPah~G~VG~Gml~aav~G~vFaSPs---~~qi~~ai~~v~-~~~Gvl~ivkNYtG- 110 (584)
T PTZ00375 37 VVVRSDID-KTKVLLISGGGSGHEPAHAGFVGKGWLTAAVCGSVFASPS---TKHVLAAIEYVP-NGPGCLLIVKNYTG- 110 (584)
T ss_pred EEEeCCCC-CCcEEEEecCCccccccccccccCCccceeecccccCCCC---HHHHHHHHHHhc-CCCCEEEEecccHH-
Confidence 44554433 46789998765555552111 223477899999876 579999999775 55699988763332
Q ss_pred CcchHHHhhhhhcccCCCCchhhhhhcCCCCCccChhHHHHHHHHcCCC
Q 018477 226 GIGLGHKLRAYNLQDDGHDTVEANEELGLPVDSREYGIGAQILRDLGVR 274 (355)
Q Consensus 226 giGl~~kl~ay~lq~~g~dt~~An~~lg~~~D~RdygigAqILrdLGV~ 274 (355)
|--+|+++++.++.-|++
T Consensus 111 -------------------------------D~lnF~lA~e~a~~eGi~ 128 (584)
T PTZ00375 111 -------------------------------DILNFELAVEQARARGIQ 128 (584)
T ss_pred -------------------------------HHhhHHHHHHHHHhCCCc
Confidence 667899999999999985
No 34
>KOG2426 consensus Dihydroxyacetone kinase/glycerone kinase [Carbohydrate transport and metabolism]
Probab=59.73 E-value=53 Score=34.99 Aligned_cols=94 Identities=22% Similarity=0.433 Sum_probs=68.4
Q ss_pred CcccEEEEEEEeCCCCceEEEEEECcCCCCCcceEEeccC---------CccccccCCCCCCChHHHHHHHHHHHHcCCE
Q 018477 144 MWGPFKAHCYRSLLDGIEHIAMVKGEIGDGQDILVRVHSE---------CLTGDIFGSARCDCGNQLALAMKQIEAAGRG 214 (355)
Q Consensus 144 ~~G~F~~~~y~~~~~g~eH~ALv~Gdi~~~~~vlVRVHS~---------cltgDvfgs~~CdCg~qL~~Al~~Ia~~G~G 214 (355)
-+-+-+.+.|++......|++|+.|-=++.+|. |+. -..||+|-|.. -.|.-.|++.+.. ..|
T Consensus 30 ~~~~~r~vl~~~~~~~~~kValiSGGGSGHEPt----HAGfVGkGmLtaai~G~iFASPs---tkqI~aairaV~~-~~G 101 (582)
T KOG2426|consen 30 VHPEDRVVLFRDASAPKPKVALISGGGSGHEPT----HAGFVGKGMLTAAIAGDIFASPS---TKQILAAIRAVEG-EAG 101 (582)
T ss_pred ecccceEEEEeecCCCCCceEEEeCCCCCCCcc----cccccccchhhhhhhcccccCCc---HHHHHHHHHHhcc-CCc
Confidence 344557788888776678999999876666663 443 45699999875 3699999999944 459
Q ss_pred EEEEEeCCCCCCcchHHHhhhhhcccCCCCchhhhhhcCCCCCccChhHHHHHHHHcCCCeeee
Q 018477 215 VLVYLRGHEGRGIGLGHKLRAYNLQDDGHDTVEANEELGLPVDSREYGIGAQILRDLGVRTMKL 278 (355)
Q Consensus 215 VlvYLr~qEgrgiGl~~kl~ay~lq~~g~dt~~An~~lg~~~D~RdygigAqILrdLGV~~irL 278 (355)
.|++..|=.| |--.||++++=-|..|++ ++|
T Consensus 102 tLlIVKNYTG--------------------------------D~LhFGLAaErara~G~~-ve~ 132 (582)
T KOG2426|consen 102 TLLIVKNYTG--------------------------------DRLHFGLAAERARAAGIK-VEL 132 (582)
T ss_pred eEEEEecccc--------------------------------ceeehhhhHHHHHhcCCc-eEE
Confidence 9988863322 455788888888888884 444
No 35
>PF13344 Hydrolase_6: Haloacid dehalogenase-like hydrolase; PDB: 2HO4_B 1YV9_A 1WVI_B 3EPR_A 2P27_A 2OYC_A 2CFT_A 2P69_A 2CFS_A 2CFR_A ....
Probab=55.47 E-value=3.1 Score=34.20 Aligned_cols=51 Identities=25% Similarity=0.421 Sum_probs=0.0
Q ss_pred HHHHHHHcCCCeeeeccCCccc-----ccccccCCceEEEEeecCCCCCcchHHHHHHH
Q 018477 264 GAQILRDLGVRTMKLMTNNPSK-----YVGLKGYGLAIAGRIPLLTPITMENKRYLETK 317 (355)
Q Consensus 264 gAqILrdLGV~~irLLTNnP~K-----~~aL~g~GieV~ervpl~~~~~~~n~~yl~tK 317 (355)
+.+-|++.| +++.++|||+.+ ...|+..|+++.+ .-.+.+..--..||+.+
T Consensus 22 ~l~~L~~~g-~~~~~lTNns~~s~~~~~~~L~~~Gi~~~~--~~i~ts~~~~~~~l~~~ 77 (101)
T PF13344_consen 22 ALDALRERG-KPVVFLTNNSSRSREEYAKKLKKLGIPVDE--DEIITSGMAAAEYLKEH 77 (101)
T ss_dssp HHHHHHHTT-SEEEEEES-SSS-HHHHHHHHHHTTTT--G--GGEEEHHHHHHHHHHHH
T ss_pred HHHHHHHcC-CCEEEEeCCCCCCHHHHHHHHHhcCcCCCc--CEEEChHHHHHHHHHhc
No 36
>PF00332 Glyco_hydro_17: Glycosyl hydrolases family 17; InterPro: IPR000490 O-Glycosyl hydrolases 3.2.1. from EC are a widespread group of enzymes that hydrolyse the glycosidic bond between two or more carbohydrates, or between a carbohydrate and a non-carbohydrate moiety. A classification system for glycosyl hydrolases, based on sequence similarity, has led to the definition of 85 different families [, ]. This classification is available on the CAZy (CArbohydrate-Active EnZymes) web site. Glycoside hydrolase family 17 GH17 from CAZY comprises enzymes with several known activities; endo-1,3-beta-glucosidase (3.2.1.39 from EC); lichenase (3.2.1.73 from EC); exo-1,3-glucanase (3.2.1.58 from EC). Currently these enzymes have only been found in plants and in fungi. ; GO: 0004553 hydrolase activity, hydrolyzing O-glycosyl compounds, 0005975 carbohydrate metabolic process; PDB: 1AQ0_B 1GHR_A 1GHS_B 2CYG_A 3UR8_A 3UR7_B 3EM5_C 3F55_D.
Probab=48.96 E-value=13 Score=36.90 Aligned_cols=39 Identities=18% Similarity=0.437 Sum_probs=29.6
Q ss_pred HHHHHHHHcCCCeeeeccCCcccccccccCCceEEEEee
Q 018477 263 IGAQILRDLGVRTMKLMTNNPSKYVGLKGYGLAIAGRIP 301 (355)
Q Consensus 263 igAqILrdLGV~~irLLTNnP~K~~aL~g~GieV~ervp 301 (355)
-..+.|+..||++|||..-+|.=+.++++-||+|+--||
T Consensus 17 ~vv~l~ks~~i~~vri~d~~~~iL~a~a~S~i~v~v~vp 55 (310)
T PF00332_consen 17 KVVSLLKSNGITKVRIYDADPSILRAFAGSGIEVMVGVP 55 (310)
T ss_dssp HHHHHHHHTT--EEEESS--HHHHHHHTTS--EEEEEE-
T ss_pred HHHHHHHhcccccEEeecCcHHHHHHHhcCCceeeeccC
Confidence 457889999999999999999999999999999999988
No 37
>TIGR02990 ectoine_eutA ectoine utilization protein EutA. Members of this protein family are EutA, a predicted arylmalonate decarboxylase found in a conserved ectoine utilization operon of species that include Sinorhizobium meliloti 1021 (where it is known to be induced by ectoine), Mesorhizobium loti and Silicibacter pomeroyi. It is missing from two other species with the other ectoine transport and utilization genes: Pseudomonas putida and Agrobacterium tumefaciens.
Probab=47.89 E-value=51 Score=31.51 Aligned_cols=92 Identities=21% Similarity=0.137 Sum_probs=54.2
Q ss_pred HHHHHHHHH-HHcCCEEEEEEeCCCCCCcchHHHhhhhhcc-cCCCCchhhhhhcCCCCCccChhHHHHHHHHcCCCeee
Q 018477 200 QLALAMKQI-EAAGRGVLVYLRGHEGRGIGLGHKLRAYNLQ-DDGHDTVEANEELGLPVDSREYGIGAQILRDLGVRTMK 277 (355)
Q Consensus 200 qL~~Al~~I-a~~G~GVlvYLr~qEgrgiGl~~kl~ay~lq-~~g~dt~~An~~lg~~~D~RdygigAqILrdLGV~~ir 277 (355)
+|..|.+.+ ....--+|+|-....+=.+|- .++..-..+ ..|...... -.....-|+.||+++|-
T Consensus 58 ~l~~aa~~ll~~a~~dvi~~~cTsgs~~~G~-~~~~~~i~~~~~g~p~tt~------------~~A~~~AL~alg~~RIa 124 (239)
T TIGR02990 58 RLTEAAALILPDEELDVVAYSCTSASVVIGD-DEVTRAINAAKPGTPVVTP------------SSAAVDGLAALGVRRIS 124 (239)
T ss_pred hHHHHHHHhcCCCCCCEEEEccchhheecCH-HHHHHHHHhcCCCCCeeCH------------HHHHHHHHHHcCCCEEE
Confidence 455555555 336888999976343333442 222211111 113322211 12234569999999999
Q ss_pred eccCCcccc-----cccccCCceEEEEeecCC
Q 018477 278 LMTNNPSKY-----VGLKGYGLAIAGRIPLLT 304 (355)
Q Consensus 278 LLTNnP~K~-----~aL~g~GieV~ervpl~~ 304 (355)
|+|-.+.-+ ..|+..|++|+....+..
T Consensus 125 lvTPY~~~v~~~~~~~l~~~G~eV~~~~~~~~ 156 (239)
T TIGR02990 125 LLTPYTPETSRPMAQYFAVRGFEIVNFTCLGL 156 (239)
T ss_pred EECCCcHHHHHHHHHHHHhCCcEEeeeeccCC
Confidence 999766653 358999999998776554
No 38
>PF13420 Acetyltransf_4: Acetyltransferase (GNAT) domain; PDB: 3DR8_A 3DR6_A 2AE6_B 2JLM_C 2J8R_A 1YVO_B 2J8M_A 2J8N_A 2BL1_A 3IWG_A ....
Probab=46.78 E-value=15 Score=30.86 Aligned_cols=36 Identities=17% Similarity=0.352 Sum_probs=29.1
Q ss_pred HHH-HHcCCCeee--eccCCcccccccccCCceEEEEee
Q 018477 266 QIL-RDLGVRTMK--LMTNNPSKYVGLKGYGLAIAGRIP 301 (355)
Q Consensus 266 qIL-rdLGV~~ir--LLTNnP~K~~aL~g~GieV~ervp 301 (355)
+++ +.+|+++|. ++++|+.-+...+.+|.++++.++
T Consensus 103 ~~af~~~~~~~i~~~v~~~N~~~i~~~~~~GF~~~g~~~ 141 (155)
T PF13420_consen 103 EYAFKELGIHKIYLEVFSSNEKAINFYKKLGFEEEGELK 141 (155)
T ss_dssp HHH-HHTT-CEEEEEEETT-HHHHHHHHHTTEEEEEEEE
T ss_pred HHhhhccCeEEEEEEEecCCHHHHHHHHhCCCEEEEEEe
Confidence 445 789999987 688899889999999999999877
No 39
>COG4130 Predicted sugar epimerase [Carbohydrate transport and metabolism]
Probab=45.64 E-value=46 Score=32.14 Aligned_cols=61 Identities=26% Similarity=0.278 Sum_probs=46.7
Q ss_pred hHHHHHHHHHhCCCCcEEEEEEeCCCC-----cccChhHHHHHHHhcCCeEEehhhHHHHHhhhhhhhhh
Q 018477 71 TEASVDLAVLAGLEPVAVLCEIVDDDG-----SMARLPKLRQFAQTENLKIISIADLIRYRRKRDRLVEL 135 (355)
Q Consensus 71 tEaavdL~rlAgl~Paavi~ei~~~dg-----~~a~~~~~~~fA~~h~L~ivti~dli~yr~~~E~lV~r 135 (355)
-|+=..|||-.|+. -+||-||-+ +-+...+++..|+++|+.|+||..|-.+-.-+|..+.+
T Consensus 19 v~affa~ak~lg~s----~VeiRndl~~~~I~dg~p~a~vka~Aek~Gl~IvSINAlypFn~wt~~~~a~ 84 (272)
T COG4130 19 VEAFFALAKRLGLS----KVEIRNDLPSNAIADGTPAAEVKALAEKAGLTIVSINALYPFNEWTEERVAE 84 (272)
T ss_pred HHHHHHHHHHcCcc----eeEEecCCCcccccCCCCHHHHHHHHHHcCcEEEEeeccccccccChHHHHH
Confidence 46778899999987 468887732 34567899999999999999999997776555554443
No 40
>PF13263 PHP_C: PHP-associated; PDB: 2Z4G_B 2YXO_B 2YZ5_A 3DCP_B.
Probab=43.38 E-value=18 Score=26.53 Aligned_cols=20 Identities=15% Similarity=0.167 Sum_probs=13.5
Q ss_pred hHHHHHHHhcCCeEEehhhH
Q 018477 103 PKLRQFAQTENLKIISIADL 122 (355)
Q Consensus 103 ~~~~~fA~~h~L~ivti~dl 122 (355)
..+.+||+++++|++..+|-
T Consensus 5 ~~A~~~A~~~~lp~~~gSDA 24 (56)
T PF13263_consen 5 RRAAELAEKYGLPFTGGSDA 24 (56)
T ss_dssp -HHHHHHHHTT--EEEE--B
T ss_pred HHHHHHHHHcCCCeEeEEcc
Confidence 46899999999999999973
No 41
>PF07905 PucR: Purine catabolism regulatory protein-like family; InterPro: IPR012914 This domain is found in the purine catabolism regulatory protein expressed by Bacillus subtilis (PucR, O32138 from SWISSPROT). PucR is thought to be a transcriptional regulator of genes involved in the purine degradation pathway, and may contain a LysR-like DNA-binding domain. It is similar to LysR-type regulators in that it represses its own expression []. The other members of this family are also putative regulatory proteins.
Probab=43.19 E-value=94 Score=26.17 Aligned_cols=78 Identities=18% Similarity=0.196 Sum_probs=47.3
Q ss_pred CCCccccCcccceeeeecCCcccccchhHHHHHH-HHHhCCCCcEEEEEEeCCCCcccChhHHHHHHHhcCCeEEehhhH
Q 018477 44 KPEDFNRPGHIFPLKYREGGVLKRAGHTEASVDL-AVLAGLEPVAVLCEIVDDDGSMARLPKLRQFAQTENLKIISIADL 122 (355)
Q Consensus 44 ~~~df~~PGHv~Pl~a~~ggvl~R~GhtEaavdL-~rlAgl~Paavi~ei~~~dg~~a~~~~~~~fA~~h~L~ivti~dl 122 (355)
.+.+|.++|= +.|. .|..-+....+.-.++ .+|+...-+|++..+-..-..+ .+++.++|+++++|++.+..=
T Consensus 35 d~~~~l~~gE-lvlt---tg~~~~~~~~~~~~~~i~~L~~~~~agL~i~~~~~~~~i--P~~~i~~A~~~~lPli~ip~~ 108 (123)
T PF07905_consen 35 DPSDWLRGGE-LVLT---TGYALRDDDEEELREFIRELAEKGAAGLGIKTGRYLDEI--PEEIIELADELGLPLIEIPWE 108 (123)
T ss_pred CHHHhCCCCe-EEEE---CCcccCCCCHHHHHHHHHHHHHCCCeEEEEeccCccccC--CHHHHHHHHHcCCCEEEeCCC
Confidence 4677888874 2232 2333343344434444 4566666666666554222222 478999999999999999875
Q ss_pred HHHHh
Q 018477 123 IRYRR 127 (355)
Q Consensus 123 i~yr~ 127 (355)
+.|..
T Consensus 109 ~~f~~ 113 (123)
T PF07905_consen 109 VPFSD 113 (123)
T ss_pred CCHHH
Confidence 55543
No 42
>PRK14719 bifunctional RNAse/5-amino-6-(5-phosphoribosylamino)uracil reductase; Provisional
Probab=39.40 E-value=39 Score=34.36 Aligned_cols=52 Identities=13% Similarity=0.097 Sum_probs=34.8
Q ss_pred HHHHHHHHcCCCeeeecc-CCcc--c-----ccccccCCceEEEEeecCCCCCcchHHHHHH
Q 018477 263 IGAQILRDLGVRTMKLMT-NNPS--K-----YVGLKGYGLAIAGRIPLLTPITMENKRYLET 316 (355)
Q Consensus 263 igAqILrdLGV~~irLLT-NnP~--K-----~~aL~g~GieV~ervpl~~~~~~~n~~yl~t 316 (355)
-.+.-|-.-||++|-+++ -||. . +.-|+..||+|.+ -++-+....|+.|+..
T Consensus 57 ~cad~ii~~gi~rVVi~~D~d~~G~~~~~~~~~~L~~aGi~V~~--~l~~e~~~l~~~~~~~ 116 (360)
T PRK14719 57 QIADDLIAENISEVILLTDFDRAGRVYAKNIMEEFQSRGIKVNN--LIRKEIIKYSRGDLKD 116 (360)
T ss_pred HHHHHHHHcCCCEEEEEECCCCCCCccchHHHHHHHHCCCEEEe--ehHHHHHHHhHHhhhc
Confidence 366667777999999988 4442 3 5678999999954 2333444556665543
No 43
>PLN02398 hydroxyacylglutathione hydrolase
Probab=38.84 E-value=4.2e+02 Score=26.62 Aligned_cols=140 Identities=15% Similarity=0.080 Sum_probs=79.1
Q ss_pred ccccchhHHHHHHHHHhCCCCcEEEEEEeCCCCcccChhHHHHHHHhcCCeEEehhhHHHHHhhhhhhhhhcccccccCC
Q 018477 65 LKRAGHTEASVDLAVLAGLEPVAVLCEIVDDDGSMARLPKLRQFAQTENLKIISIADLIRYRRKRDRLVELAAAAPIPTM 144 (355)
Q Consensus 65 l~R~GhtEaavdL~rlAgl~Paavi~ei~~~dg~~a~~~~~~~fA~~h~L~ivti~dli~yr~~~E~lV~r~~~~~lpT~ 144 (355)
..-+|..+.-++.++..|++..++++.=-..|... -+.+|.++++.+++....-..+...-+. .+.+.. ...
T Consensus 102 vVDP~~a~~vl~~l~~~g~~L~~ILlTH~H~DH~G----G~~~L~~~~ga~V~g~~~~~~~i~~~d~---~v~dGd-~i~ 173 (329)
T PLN02398 102 VVDPSEAVPVIDALSRKNRNLTYILNTHHHYDHTG----GNLELKARYGAKVIGSAVDKDRIPGIDI---VLKDGD-KWM 173 (329)
T ss_pred EEcCCCHHHHHHHHHhcCCCceEEEECCCCchhhC----CHHHHHHhcCCEEEEehHHhhhccCCcE---EeCCCC-EEE
Confidence 44566777777777777888888888555555322 2345677788888765431111000000 011110 111
Q ss_pred cccEEEEEEEeCCCCceEEEEEECcCCCCCcceEEeccCCccccccCCCCCC-----ChHHHHHHHHHHHHcCCEEEEEE
Q 018477 145 WGPFKAHCYRSLLDGIEHIAMVKGEIGDGQDILVRVHSECLTGDIFGSARCD-----CGNQLALAMKQIEAAGRGVLVYL 219 (355)
Q Consensus 145 ~G~F~~~~y~~~~~g~eH~ALv~Gdi~~~~~vlVRVHS~cltgDvfgs~~Cd-----Cg~qL~~Al~~Ia~~G~GVlvYL 219 (355)
.|.+++.++...-....|+++...+ . ...++||.+-+..|. ...++.++|++|.+-..-.+||-
T Consensus 174 lgg~~l~vi~tPGHT~GhI~~~~~~----~-------~vLFtGDtLf~~g~Gr~feg~~~~~~~SL~rL~~L~~~t~Vyp 242 (329)
T PLN02398 174 FAGHEVLVMETPGHTRGHISFYFPG----S-------GAIFTGDTLFSLSCGKLFEGTPEQMLSSLQKIISLPDDTNIYC 242 (329)
T ss_pred ECCeEEEEEeCCCcCCCCEEEEECC----C-------CEEEECCCcCCCCcCCCCCCCHHHHHHHHHHHHcCCCCeEEEC
Confidence 2444555555443445677775421 1 125689977665553 23588999999998776677775
Q ss_pred eCCCC
Q 018477 220 RGHEG 224 (355)
Q Consensus 220 r~qEg 224 (355)
+||.
T Consensus 243 -GHgy 246 (329)
T PLN02398 243 -GHEY 246 (329)
T ss_pred -CCCC
Confidence 5774
No 44
>COG3473 Maleate cis-trans isomerase [Secondary metabolites biosynthesis, transport, and catabolism]
Probab=38.02 E-value=32 Score=32.96 Aligned_cols=58 Identities=19% Similarity=0.137 Sum_probs=41.8
Q ss_pred HHHHHHHHcCCCeeeeccCC-----cccccccccCCceEEEEeecCCCCCcc------hHHHHHHHHHh
Q 018477 263 IGAQILRDLGVRTMKLMTNN-----PSKYVGLKGYGLAIAGRIPLLTPITME------NKRYLETKRAK 320 (355)
Q Consensus 263 igAqILrdLGV~~irLLTNn-----P~K~~aL~g~GieV~ervpl~~~~~~~------n~~yl~tK~~~ 320 (355)
...+-|+.||+++|.+||-. ..-...|++.|+||+...-+.+.-|.+ ..-|=-+|+-.
T Consensus 108 Avv~aL~al~a~ri~vlTPY~~evn~~e~ef~~~~Gfeiv~~~~Lgi~dn~eigr~~P~~~y~lAk~~~ 176 (238)
T COG3473 108 AVVEALNALGAQRISVLTPYIDEVNQREIEFLEANGFEIVDFKGLGITDNLEIGRQEPWAVYRLAKEVF 176 (238)
T ss_pred HHHHHHHhhCcceEEEeccchhhhhhHHHHHHHhCCeEEEEeeccCCcccchhcccChHHHHHHHHHhc
Confidence 34566999999999999842 222557899999999998876655543 35566666654
No 45
>PRK04516 minC septum formation inhibitor; Reviewed
Probab=36.53 E-value=1.4e+02 Score=28.80 Aligned_cols=98 Identities=11% Similarity=-0.086 Sum_probs=59.9
Q ss_pred CceeEeeecCCceEEEEecCCCCCCCChHHHHHHHHHHHcCCCCCCccccCcccceeeeecCCccccc-chhHHHHHHHH
Q 018477 1 MMMAIIFFLSTKLFGFDAKYGTTTGVSANDRAKTVLALACRDSKPEDFNRPGHIFPLKYREGGVLKRA-GHTEASVDLAV 79 (355)
Q Consensus 1 ~~~~~~~~~~~ftvsvda~~g~~TGISa~dRa~Tir~la~~~~~~~df~~PGHv~Pl~a~~ggvl~R~-GhtEaavdL~r 79 (355)
.|.++.|+.+.||++|=.-.. +-..+-.++.+-+.- ..|. |.. -|+...-..+..-. --..+-+++++
T Consensus 4 ~~~~felKg~~~tl~vL~L~~--~d~~~l~~~L~~ki~----qaP~-f~~----aPvVldl~~l~~~~~~dl~~L~~~l~ 72 (235)
T PRK04516 4 IMNAFDIKSTKMDVLSISLHT--SDLFDLEDVLVKLGK----KFQE-SGV----VPFVLDVQEFDYPESLDLAALVSLFS 72 (235)
T ss_pred ccCceeeecceEEEEEEEeCC--CCHHHHHHHHHHHHH----hCcC-CCC----CcEEEEchhhCCcccccHHHHHHHHH
Confidence 478999999999999987532 222222222222221 1233 422 46655443442111 12556788999
Q ss_pred HhCCCCcEEEEEEeCCCCcccChhHHHHHHHhcCCeEEeh
Q 018477 80 LAGLEPVAVLCEIVDDDGSMARLPKLRQFAQTENLKIISI 119 (355)
Q Consensus 80 lAgl~Paavi~ei~~~dg~~a~~~~~~~fA~~h~L~ivti 119 (355)
-.|+.|+||-+. .++...+|...||+++.-
T Consensus 73 ~~gl~~vGv~g~----------~~~~~~~a~~~gL~~~~~ 102 (235)
T PRK04516 73 RHGMQILGLKHS----------NERWAAVAMKYHLLFCLS 102 (235)
T ss_pred HCCCEEEEEeCC----------CHHHHHHHhhCCCccccc
Confidence 999999998762 345677888899998764
No 46
>PF05198 IF3_N: Translation initiation factor IF-3, N-terminal domain; InterPro: IPR019814 Initiation factor 3 (IF-3) (gene infC) is one of the three factors required for the initiation of protein biosynthesis in bacteria. IF-3 is thought to function as a fidelity factor during the assembly of the ternary initiation complex which consist of the 30S ribosomal subunit, the initiator tRNA and the messenger RNA. IF-3 is a basic protein that binds to the 30S ribosomal subunit []. The chloroplast initiation factor IF-3(chl) is a protein that enhances the poly(A,U,G)-dependent binding of the initiator tRNA to chloroplast ribosomal 30s subunits in which the central section is evolutionary related to the sequence of bacterial IF-3 []. ; GO: 0003743 translation initiation factor activity, 0006413 translational initiation; PDB: 1TIF_A.
Probab=34.45 E-value=51 Score=26.16 Aligned_cols=32 Identities=19% Similarity=0.498 Sum_probs=24.8
Q ss_pred EEEEeCCCCc---ccChhHHHHHHHhcCCeEEehh
Q 018477 89 LCEIVDDDGS---MARLPKLRQFAQTENLKIISIA 120 (355)
Q Consensus 89 i~ei~~~dg~---~a~~~~~~~fA~~h~L~ivti~ 120 (355)
.+.+++++|+ .++..+|.+.|++.||-+|-++
T Consensus 14 ~VrlI~~~g~~lGv~~~~eAl~~A~~~~lDLV~v~ 48 (76)
T PF05198_consen 14 EVRLIDEDGEQLGVMSLREALRLAKEKGLDLVEVS 48 (76)
T ss_dssp EEEEE-TTS-EEEEEEHHHHHHHHHHTT-EEEEEE
T ss_pred EEEEECCCCcEeceEEHHHHHHHHHHcCCcEEEEc
Confidence 4567888885 4789999999999999999776
No 47
>cd03109 DTBS Dethiobiotin synthetase (DTBS) is the penultimate enzyme in the biotin biosynthesis pathway in Escherichia coli and other microorganisms. The enzyme catalyzes formation of the ureido ring of dethiobiotin from (7R,8S)-7,8-diaminononanoic acid (DAPA) and carbon dioxide. The enzyme utilizes carbon dioxide instead of hydrogen carbonate as substrate and is dependent on ATP and divalent metal ions as cofactors.
Probab=32.21 E-value=99 Score=26.31 Aligned_cols=51 Identities=10% Similarity=0.240 Sum_probs=33.4
Q ss_pred ccchhHHHHHHHHHhCCCCcEEEEEEeCCCCcccChhHHHHHHHhcCCeEEe
Q 018477 67 RAGHTEASVDLAVLAGLEPVAVLCEIVDDDGSMARLPKLRQFAQTENLKIIS 118 (355)
Q Consensus 67 R~GhtEaavdL~rlAgl~Paavi~ei~~~dg~~a~~~~~~~fA~~h~L~ivt 118 (355)
.-.|+...+..++..|+...+++....+++-.+ .......+++..++|++-
T Consensus 81 ~i~~a~~~~~~l~~~g~~i~gvi~N~~~~~~~~-~~~~~~~i~~~~gip~LG 131 (134)
T cd03109 81 SINHAFLTIEAARIKGIILNGVLGNVIVEKEGL-ATLNVETIERLTGIPVLG 131 (134)
T ss_pred cHhHHHHHHHHHHhcCCceeEEEEccCCCccch-hhhhHHHHHHhcCCCEEE
Confidence 355677777888888888888877666553222 224566777777777653
No 48
>COG0223 Fmt Methionyl-tRNA formyltransferase [Translation, ribosomal structure and biogenesis]
Probab=29.82 E-value=97 Score=31.00 Aligned_cols=133 Identities=17% Similarity=0.198 Sum_probs=80.0
Q ss_pred HHHHHHHHhC--CCCcEEEEEEeCCCC--cccChhHHHHHHHhcCCeEEehhhHHHHHhhhhhhhhhc---------ccc
Q 018477 73 ASVDLAVLAG--LEPVAVLCEIVDDDG--SMARLPKLRQFAQTENLKIISIADLIRYRRKRDRLVELA---------AAA 139 (355)
Q Consensus 73 aavdL~rlAg--l~Paavi~ei~~~dg--~~a~~~~~~~fA~~h~L~ivti~dli~yr~~~E~lV~r~---------~~~ 139 (355)
|+.-|-.|.+ ..-++|+..--...| .-.......++|.+||||+..-+.|..-- -...++.. --.
T Consensus 13 a~~~L~~L~~~~~eivaV~Tqpdkp~gR~~~l~~spVk~~A~~~~ipv~qP~~l~~~e--~~~~l~~l~~D~ivvvayG~ 90 (307)
T COG0223 13 AVPSLEALIEAGHEIVAVVTQPDKPAGRGKKLTPSPVKRLALELGIPVFQPEKLNDPE--FLEELAALDPDLIVVVAYGQ 90 (307)
T ss_pred hHHHHHHHHhCCCceEEEEeCCCCccCCCCcCCCChHHHHHHHcCCceeccccCCcHH--HHHHHhccCCCEEEEEehhh
Confidence 3444555544 566666654333333 34556789999999999999887765320 00111111 011
Q ss_pred ccc------CCcccEEEEE-----EEeCCCCceEEEEEECcCCCCCcceEEeccCCccccccCCCCCCC-----hHHHHH
Q 018477 140 PIP------TMWGPFKAHC-----YRSLLDGIEHIAMVKGEIGDGQDILVRVHSECLTGDIFGSARCDC-----GNQLAL 203 (355)
Q Consensus 140 ~lp------T~~G~F~~~~-----y~~~~~g~eH~ALv~Gdi~~~~~vlVRVHS~cltgDvfgs~~CdC-----g~qL~~ 203 (355)
-+| -++|-+.+|. ||.. ..-|.|+..||-..+ .++.++...--+||++...+|.= ...|+.
T Consensus 91 ilp~~iL~~~~~G~iNvH~SLLPr~RGa--APIq~aI~~Gd~~TG-vTim~M~~~lDaG~Il~q~~~~I~~~dta~~L~~ 167 (307)
T COG0223 91 ILPKEILDLPPYGCINLHPSLLPRYRGA--APIQWAILNGDTETG-VTIMQMDEGLDAGDILAQREVPIEPDDTAGSLHD 167 (307)
T ss_pred hCCHHHHhcCcCCeEEecCccCccccCc--cHHHHHHHcCCcccc-eEEEEccccCCCcceeeeEEeccCCcccHHHHHH
Confidence 122 3457777775 4421 235789999987665 47889999988999999888642 345655
Q ss_pred HHHHHHH
Q 018477 204 AMKQIEA 210 (355)
Q Consensus 204 Al~~Ia~ 210 (355)
.|..++.
T Consensus 168 kLa~~ga 174 (307)
T COG0223 168 KLAELGA 174 (307)
T ss_pred HHHHHHH
Confidence 5544443
No 49
>TIGR03413 GSH_gloB hydroxyacylglutathione hydrolase. Members of this protein family are hydroxyacylglutathione hydrolase, a detoxification enzyme known as glyoxalase II. It follows lactoylglutathione lyase, or glyoxalase I, and acts to remove the toxic metabolite methylglyoxal and related compounds. This protein belongs to the broader metallo-beta-lactamase family (pfam00753).
Probab=28.67 E-value=5e+02 Score=24.41 Aligned_cols=135 Identities=19% Similarity=0.197 Sum_probs=73.4
Q ss_pred cchhHHHHHHHHHhCCCCcEEEEEEeCCCCcccChhHHHHHHHhcCCeEEehhhHHHHHhhhhhhhhhcccccccCCccc
Q 018477 68 AGHTEASVDLAVLAGLEPVAVLCEIVDDDGSMARLPKLRQFAQTENLKIISIADLIRYRRKRDRLVELAAAAPIPTMWGP 147 (355)
Q Consensus 68 ~GhtEaavdL~rlAgl~Paavi~ei~~~dg~~a~~~~~~~fA~~h~L~ivti~dli~yr~~~E~lV~r~~~~~lpT~~G~ 147 (355)
+|-.+.-++..+-.|+.+.+|++.=...|.-. .+..|.+.++++++.-..- +. ......+... -...+|.
T Consensus 27 ~g~~~~i~~~l~~~g~~l~~Il~TH~H~DHig----G~~~l~~~~~~~V~~~~~~---~~--~~~~~~v~~g-~~~~~g~ 96 (248)
T TIGR03413 27 PGEAEPVLDALEARGLTLTAILLTHHHHDHVG----GVAELLEAFPAPVYGPAEE---RI--PGITHPVKDG-DTVTLGG 96 (248)
T ss_pred CCChHHHHHHHHHcCCeeeEEEeCCCCccccC----CHHHHHHHCCCeEEecccc---cC--CCCcEEeCCC-CEEEECC
Confidence 33344455566666888777777554455322 2345667777776643321 00 0000001111 0112355
Q ss_pred EEEEEEEeCCCCceEEEEEECcCCCCCcceEEeccCCccccccCCCCCC-----ChHHHHHHHHHHHHcCCEEEEEEeCC
Q 018477 148 FKAHCYRSLLDGIEHIAMVKGEIGDGQDILVRVHSECLTGDIFGSARCD-----CGNQLALAMKQIEAAGRGVLVYLRGH 222 (355)
Q Consensus 148 F~~~~y~~~~~g~eH~ALv~Gdi~~~~~vlVRVHS~cltgDvfgs~~Cd-----Cg~qL~~Al~~Ia~~G~GVlvYLr~q 222 (355)
+++.++...-....|+++...+ ....++||.+-+..|. -..++-++|++|.+-..-.+||- +|
T Consensus 97 ~~i~v~~tpGHT~g~i~~~~~~-----------~~~lftGDtl~~~g~g~~~~~~~~~~~~Sl~~l~~l~~~~~i~p-GH 164 (248)
T TIGR03413 97 LEFEVLAVPGHTLGHIAYYLPD-----------SPALFCGDTLFSAGCGRLFEGTPEQMYDSLQRLAALPDDTLVYC-AH 164 (248)
T ss_pred EEEEEEECCCCCcccEEEEECC-----------CCEEEEcCccccCCcCCCCCCCHHHHHHHHHHHHcCCCCeEEEC-CC
Confidence 6666666443445677765521 1236789977665553 13588899999998877777775 57
Q ss_pred CC
Q 018477 223 EG 224 (355)
Q Consensus 223 Eg 224 (355)
+.
T Consensus 165 ~~ 166 (248)
T TIGR03413 165 EY 166 (248)
T ss_pred Cc
Confidence 63
No 50
>PF00107 ADH_zinc_N: Zinc-binding dehydrogenase; InterPro: IPR013149 Alcohol dehydrogenase (1.1.1.1 from EC) (ADH) catalyzes the reversible oxidation of alcohols to their corresponding acetaldehyde or ketone with the concomitant reduction of NAD: alcohol + NAD = aldehyde or ketone + NADH Currently three structurally and catalytically different types of alcohol dehydrogenases are known: Zinc-containing 'long-chain' alcohol dehydrogenases. Insect-type, or 'short-chain' alcohol dehydrogenases. Iron-containing alcohol dehydrogenases. Zinc-containing ADH's [, ] are dimeric or tetrameric enzymes that bind two atoms of zinc per subunit. One of the zinc atom is essential for catalytic activity while the other is not. Both zinc atoms are coordinated by either cysteine or histidine residues; the catalytic zinc is coordinated by two cysteines and one histidine. Zinc-containing ADH's are found in bacteria, mammals, plants, and in fungi. In many species there is more than one isozyme (for example, humans have at least six isozymes, yeast have three, etc.). A number of other zinc-dependent dehydrogenases are closely related to zinc ADH [] and are included in this family. Sorbitol dehydrogenase (1.1.1.14 from EC) L-threonine 3-dehydrogenase (1.1.1.103 from EC) Glutathione-dependent formaldehyde dehydrogenase (1.1.1.284 from EC) Mannitol dehydrogenase (1.1.1.255 from EC) In addition, this family includes NADP-dependent quinone oxidoreductase (1.6.5.5 from EC), an enzyme found in bacteria (gene qor), in yeast and in mammals where, in some species such as rodents, it has been recruited as an eye lens protein and is known as zeta-crystallin []. The sequence of quinone oxidoreductase is distantly related to that other zinc-containing alcohol dehydrogenases and it lacks the zinc-ligand residues. The torpedo fish and mammalian synaptic vesicle membrane protein vat-1 is related to qor. This entry represents the cofactor-binding domain of these enzymes, which is normally found towards the C terminus. Structural studies indicate that it forms a classical Rossman fold that reversibly binds NAD(H) [, , ].; GO: 0008270 zinc ion binding, 0016491 oxidoreductase activity, 0055114 oxidation-reduction process; PDB: 3PI7_A 3COS_D 1VJ1_A 2ZB3_A 1PIW_B 1Q1N_A 1PS0_A 2EER_B 3KRT_A 1ZSY_A ....
Probab=27.60 E-value=29 Score=28.37 Aligned_cols=34 Identities=15% Similarity=0.174 Sum_probs=28.4
Q ss_pred HHHHHHHHcCCCeeeeccCCcccccccccCCceEE
Q 018477 263 IGAQILRDLGVRTMKLMTNNPSKYVGLKGYGLAIA 297 (355)
Q Consensus 263 igAqILrdLGV~~irLLTNnP~K~~aL~g~GieV~ 297 (355)
.++|++|.+| .+|-..+.++.|...++.+|...+
T Consensus 5 ~a~q~ak~~G-~~vi~~~~~~~k~~~~~~~Ga~~~ 38 (130)
T PF00107_consen 5 MAIQLAKAMG-AKVIATDRSEEKLELAKELGADHV 38 (130)
T ss_dssp HHHHHHHHTT-SEEEEEESSHHHHHHHHHTTESEE
T ss_pred HHHHHHHHcC-CEEEEEECCHHHHHHHHhhccccc
Confidence 3679999999 888888889999999999994433
No 51
>PF08369 PCP_red: Proto-chlorophyllide reductase 57 kD subunit; InterPro: IPR013580 This domain is found in bacteria and plant chloroplast proteins. It often appears at the C-terminal of nitrogenase component 1 type oxidoreductases (IPR000510 from INTERPRO) and sometimes independently in bacterial proteins such as the proto-chlorophyllide reductase subunit B of the cyanobacterium Synechocystis. This domain is also associated with chlorophyllide reductase subunit Z, converts chlorophylls (Chl) into bacteriochlorophylls (BChl) by reducing ring B of the tetrapyrrole.; GO: 0016491 oxidoreductase activity, 0015979 photosynthesis, 0015995 chlorophyll biosynthetic process, 0055114 oxidation-reduction process; PDB: 2KRU_A 2L09_A.
Probab=27.55 E-value=75 Score=22.70 Aligned_cols=23 Identities=9% Similarity=0.118 Sum_probs=17.7
Q ss_pred hhHHHHHHHhcCCeEEehhhHHH
Q 018477 102 LPKLRQFAQTENLKIISIADLIR 124 (355)
Q Consensus 102 ~~~~~~fA~~h~L~ivti~dli~ 124 (355)
+..+++||++.|.+.||.+.+..
T Consensus 21 r~~~E~~Ar~~G~~~IT~e~v~~ 43 (45)
T PF08369_consen 21 RDAAEKYARERGYDEITVEVVDA 43 (45)
T ss_dssp HHHHHHHHHHCT-SEE-HHHHHH
T ss_pred HHHHHHHHHHcCCCeECHHHHHh
Confidence 45789999999999999987754
No 52
>PRK11320 prpB 2-methylisocitrate lyase; Provisional
Probab=27.53 E-value=5.6e+02 Score=25.35 Aligned_cols=35 Identities=26% Similarity=0.170 Sum_probs=26.4
Q ss_pred EEEEecCCCCCCCChHHHHHHHHHHHcCCC---CCCccccC
Q 018477 14 FGFDAKYGTTTGVSANDRAKTVLALACRDS---KPEDFNRP 51 (355)
Q Consensus 14 vsvda~~g~~TGISa~dRa~Tir~la~~~~---~~~df~~P 51 (355)
|++|+ .++-| +...=++|++.+...-. .-+|-+.|
T Consensus 81 viaD~--d~GyG-~~~~v~r~V~~~~~aGaagi~IEDq~~p 118 (292)
T PRK11320 81 LLVDI--DTGFG-GAFNIARTVKSMIKAGAAAVHIEDQVGA 118 (292)
T ss_pred EEEEC--CCCCC-CHHHHHHHHHHHHHcCCeEEEEecCCCc
Confidence 77887 46777 88888999999997754 36776544
No 53
>PRK07505 hypothetical protein; Provisional
Probab=26.03 E-value=78 Score=31.62 Aligned_cols=38 Identities=24% Similarity=0.287 Sum_probs=31.8
Q ss_pred CCcEEEEEEeCCCCcccChhHHHHHHHhcCCeEEehhhH
Q 018477 84 EPVAVLCEIVDDDGSMARLPKLRQFAQTENLKIISIADL 122 (355)
Q Consensus 84 ~Paavi~ei~~~dg~~a~~~~~~~fA~~h~L~ivti~dl 122 (355)
..+++|||-.+..|.+...+++.++|++|++.+| ++|.
T Consensus 180 ~~~~vl~~p~~~~G~~~~~~~i~~l~~~~~~~li-~DEa 217 (402)
T PRK07505 180 KTVAYVADGVYSMGGIAPVKELLRLQEKYGLFLY-IDDA 217 (402)
T ss_pred CCEEEEEecccccCCcCCHHHHHHHHHHcCCEEE-EECc
Confidence 3578899988989999999999999999998776 3443
No 54
>TIGR01822 2am3keto_CoA 2-amino-3-ketobutyrate coenzyme A ligase. This model represents a narrowly defined clade of animal and bacterial (almost exclusively Proteobacterial) 2-amino-3-ketobutyrate--CoA ligase. This enzyme can act in threonine catabolism. The closest homolog from Bacillus subtilis, and sequences like it, may be functionally equivalent but were not included in the model because of difficulty in finding reports of function.
Probab=25.28 E-value=1.4e+02 Score=29.24 Aligned_cols=34 Identities=15% Similarity=0.280 Sum_probs=27.7
Q ss_pred CCcEEEEE-EeCCCCcccChhHHHHHHHhcCCeEE
Q 018477 84 EPVAVLCE-IVDDDGSMARLPKLRQFAQTENLKII 117 (355)
Q Consensus 84 ~Paavi~e-i~~~dg~~a~~~~~~~fA~~h~L~iv 117 (355)
.+..|+.+ +.+.+|..++.+++.++|++||+.++
T Consensus 170 ~~~~v~~~~v~~~tG~~~~l~~i~~la~~~~~~li 204 (393)
T TIGR01822 170 RHRLIATDGVFSMDGVIAPLDEICDLADKYDALVM 204 (393)
T ss_pred CceEEEEeCCccCCCCcCCHHHHHHHHHHcCCEEE
Confidence 55566666 44678999999999999999999877
No 55
>PRK13016 dihydroxy-acid dehydratase; Provisional
Probab=23.96 E-value=2.5e+02 Score=30.58 Aligned_cols=94 Identities=16% Similarity=0.252 Sum_probs=54.1
Q ss_pred EEEEEeCCCCceEEEEEECcCCCCCcceEEeccC-----Ccccc--ccCCCCCCChHHHHHHHHHHHHc--C--CEEEEE
Q 018477 150 AHCYRSLLDGIEHIAMVKGEIGDGQDILVRVHSE-----CLTGD--IFGSARCDCGNQLALAMKQIEAA--G--RGVLVY 218 (355)
Q Consensus 150 ~~~y~~~~~g~eH~ALv~Gdi~~~~~vlVRVHS~-----cltgD--vfgs~~CdCg~qL~~Al~~Ia~~--G--~GVlvY 218 (355)
++.+.+.....-++++.+|++.++..| |++=.. -.+|- ||. .=+.|++.|.+. . .|-||.
T Consensus 366 I~~~~~P~~~~Ggl~iL~GNLAP~GaV-iK~sav~~~~~~~~GpA~VF~--------see~a~~ai~~g~i~i~~GdVvV 436 (577)
T PRK13016 366 IRPLDNPVYAEGSLAVLRGNLAPDGAV-IKPAACDPKFLVHRGPALVFD--------SYPEMKAAIDDENLDVTPDHVMV 436 (577)
T ss_pred eCChhcccCCCCCEEEeecCCCCCceE-EEecccCCcccEEEeeEEEEC--------CHHHHHHHHhCCCcCCCCCeEEE
Confidence 555555555556899999999875433 222111 11332 443 345677777665 2 677888
Q ss_pred EeCCCCCCcchHHHhhhhhcccCCCCchhhhhhcCCCCCccC---hhHHHHHHHHcCCCeeeeccC
Q 018477 219 LRGHEGRGIGLGHKLRAYNLQDDGHDTVEANEELGLPVDSRE---YGIGAQILRDLGVRTMKLMTN 281 (355)
Q Consensus 219 Lr~qEgrgiGl~~kl~ay~lq~~g~dt~~An~~lg~~~D~Rd---ygigAqILrdLGV~~irLLTN 281 (355)
+|++--+|- +-+|+ +.+...+|. .|+++|-|+|.
T Consensus 437 IRyeGPkGg----------------------------PGMpE~~ml~~~~~~~~-~Gl~~valITD 473 (577)
T PRK13016 437 LRNAGPQGG----------------------------PGMPEWGMLPIPKKLLK-QGVRDMVRISD 473 (577)
T ss_pred EeCCCCCCC----------------------------CCCcccccchhHHHHHH-cCCceeEEecc
Confidence 994443331 11222 333445565 88888999996
No 56
>PRK06939 2-amino-3-ketobutyrate coenzyme A ligase; Provisional
Probab=23.80 E-value=1.6e+02 Score=28.69 Aligned_cols=38 Identities=18% Similarity=0.386 Sum_probs=30.0
Q ss_pred CCcEEEEE-EeCCCCcccChhHHHHHHHhcCCeEEehhhH
Q 018477 84 EPVAVLCE-IVDDDGSMARLPKLRQFAQTENLKIISIADL 122 (355)
Q Consensus 84 ~Paavi~e-i~~~dg~~a~~~~~~~fA~~h~L~ivti~dl 122 (355)
.+..++.+ +.+..|...+..++.++|++|++.+| .+|.
T Consensus 174 ~~~~v~~~~v~~~~G~~~~~~~l~~la~~~~~~li-~De~ 212 (397)
T PRK06939 174 RHKLIATDGVFSMDGDIAPLPEICDLADKYDALVM-VDDS 212 (397)
T ss_pred CCeEEEEecCcCCCCCcCCHHHHHHHHHHhCCEEE-EECc
Confidence 56677766 55678988999999999999999887 3443
No 57
>PLN02946 cysteine-tRNA ligase
Probab=23.52 E-value=50 Score=35.59 Aligned_cols=62 Identities=27% Similarity=0.382 Sum_probs=41.4
Q ss_pred cCCCCCCCChHHHHHHHHHHHcC-CCCCCccc-----cCcccceeeeecCCcccccc-hhHHHHHHHHHhCC
Q 018477 19 KYGTTTGVSANDRAKTVLALACR-DSKPEDFN-----RPGHIFPLKYREGGVLKRAG-HTEASVDLAVLAGL 83 (355)
Q Consensus 19 ~~g~~TGISa~dRa~Tir~la~~-~~~~~df~-----~PGHv~Pl~a~~ggvl~R~G-htEaavdL~rlAgl 83 (355)
.+|.+.+.+-.+-....|.-.++ ...|.||+ +||. |-...|+|. .||| |.|.|+--.+..|-
T Consensus 208 ~YG~Ls~~~l~~l~~g~rv~~~~~K~np~DFaLWK~~k~ge--~~W~SPWG~-GRPGWHIECSaMs~~~lG~ 276 (557)
T PLN02946 208 EYGKLSGRKLEDNRAGERVAVDSRKKNPADFALWKAAKEGE--PFWDSPWGP-GRPGWHIECSAMSAAYLGH 276 (557)
T ss_pred hhhhcCCCChhHhhcCCCCCcccccCCccccceeccCCCCC--CCccCCCCC-CCCcHHHHHHHHHHHHcCC
Confidence 47887777654421111111222 33599996 5896 778889995 8999 99999887777664
No 58
>COG0461 PyrE Orotate phosphoribosyltransferase [Nucleotide transport and metabolism]
Probab=23.01 E-value=1.9e+02 Score=27.15 Aligned_cols=49 Identities=18% Similarity=0.278 Sum_probs=37.8
Q ss_pred HHHHHHHHhCCCCcEEEEEEeCCCCcccChhHHHHHHHhcC---CeEEehhhHHHHHhh
Q 018477 73 ASVDLAVLAGLEPVAVLCEIVDDDGSMARLPKLRQFAQTEN---LKIISIADLIRYRRK 128 (355)
Q Consensus 73 aavdL~rlAgl~Paavi~ei~~~dg~~a~~~~~~~fA~~h~---L~ivti~dli~yr~~ 128 (355)
-|++..|-+|...++++|-+ |- .+.++++-+++| .++++++||+.+...
T Consensus 130 eai~~l~~~G~~V~gv~~iv-DR------~~~~~~~~~~~g~~~~sl~tl~dl~~~~~~ 181 (201)
T COG0461 130 EAVEALREAGAEVVGVAVIV-DR------QSGAKEVLKEYGVKLVSLVTLSDLLEVLYE 181 (201)
T ss_pred HHHHHHHHcCCeEEEEEEEE-ec------chhHHHHHHhcCCceEEEeeHHHHHHHHHh
Confidence 57999999999999999943 32 377788889999 556677788777654
No 59
>PLN02880 tyrosine decarboxylase
Probab=22.74 E-value=1.6e+02 Score=30.87 Aligned_cols=52 Identities=12% Similarity=0.169 Sum_probs=41.4
Q ss_pred cccchhHHHHHHHHHhCCCCcEEEEEEeC-CCCcccChhHHHHHHHhcCCeEE
Q 018477 66 KRAGHTEASVDLAVLAGLEPVAVLCEIVD-DDGSMARLPKLRQFAQTENLKII 117 (355)
Q Consensus 66 ~R~GhtEaavdL~rlAgl~Paavi~ei~~-~dg~~a~~~~~~~fA~~h~L~iv 117 (355)
-+...-|.+++-.+.+|+.|.+|++..=. +.|.....+++.++|++||+.+.
T Consensus 221 md~~~L~~~i~~~~~~g~~p~~vvataGTT~~GaiDpl~eI~~i~~~~~iwlH 273 (490)
T PLN02880 221 LAPELLSEAISTDLSSGLIPFFLCATVGTTSSTAVDPLLELGKIAKSNGMWFH 273 (490)
T ss_pred CCHHHHHHHHHHHHHCCCccEEEEEecCCCcCcccCcHHHHHHHHHHcCCEEE
Confidence 45556677787777889999999887654 34788899999999999998763
No 60
>PRK12418 cysteinyl-tRNA synthetase; Provisional
Probab=22.43 E-value=63 Score=33.22 Aligned_cols=37 Identities=35% Similarity=0.350 Sum_probs=30.2
Q ss_pred CCCCccc-----cCcccceeeeecCCcccccc-hhHHHHHHHHHhC
Q 018477 43 SKPEDFN-----RPGHIFPLKYREGGVLKRAG-HTEASVDLAVLAG 82 (355)
Q Consensus 43 ~~~~df~-----~PGHv~Pl~a~~ggvl~R~G-htEaavdL~rlAg 82 (355)
..|.||. .||+ |-...|+|. .||| |+|.|+--.+..|
T Consensus 170 ~~p~DFaLWK~~~~~~--~~w~spwG~-GRPGWHiECsam~~~~lg 212 (384)
T PRK12418 170 RDPLDALLWRAARPGE--PSWPSPFGP-GRPGWHIECSAIALNRLG 212 (384)
T ss_pred CCcccceeeccCCCCC--CcccCCCCC-CCChhHHHHHHHHHHHcC
Confidence 4589986 4886 778889995 8999 9999998888765
No 61
>PRK08574 cystathionine gamma-synthase; Provisional
Probab=22.33 E-value=1.4e+02 Score=30.05 Aligned_cols=34 Identities=12% Similarity=0.169 Sum_probs=28.8
Q ss_pred CCcEEEEEEeC-CCCcccChhHHHHHHHhcCCeEE
Q 018477 84 EPVAVLCEIVD-DDGSMARLPKLRQFAQTENLKII 117 (355)
Q Consensus 84 ~Paavi~ei~~-~dg~~a~~~~~~~fA~~h~L~iv 117 (355)
++.+|++|-.+ ..|.+++.+++.++|++||++++
T Consensus 137 ~tklV~ie~p~NPtG~v~dl~~I~~la~~~gi~li 171 (385)
T PRK08574 137 RTKLVFIETMTNPTLKVIDVPEVAKAAKELGAILV 171 (385)
T ss_pred CceEEEEECCCCCCCEecCHHHHHHHHHHcCCEEE
Confidence 56778877664 57999999999999999999887
No 62
>TIGR03447 mycothiol_MshC cysteine--1-D-myo-inosityl 2-amino-2-deoxy-alpha-D-glucopyranoside ligase. Members of this protein family are MshC, l-cysteine:1-D-myo-inosityl 2-amino-2-deoxy-alpha-D-glucopyranoside ligase, an enzyme that uses ATP to ligate a Cys residue to a mycothiol precursor molecule, in the second to last step in mycothiol biosynthesis. This enzyme shows considerable homology to Cys--tRNA ligases, and many instances are misannotated as such. Mycothiol is found in Mycobacterium tuberculosis, Corynebacterium glutamicum, Streptomyces coelicolor, and various other members of the Actinobacteria. Mycothiol is an analog to glutathione.
Probab=22.09 E-value=70 Score=33.24 Aligned_cols=37 Identities=32% Similarity=0.296 Sum_probs=29.8
Q ss_pred CCCCccc-----cCcccceeeeecCCcccccc-hhHHHHHHHHHhC
Q 018477 43 SKPEDFN-----RPGHIFPLKYREGGVLKRAG-HTEASVDLAVLAG 82 (355)
Q Consensus 43 ~~~~df~-----~PGHv~Pl~a~~ggvl~R~G-htEaavdL~rlAg 82 (355)
..|.||. +||+ |-...++|. .||| |.|.|+--.+..|
T Consensus 197 ~~p~DFaLWK~~~~~e--~~w~spwG~-GRPGWHiECsam~~~~lg 239 (411)
T TIGR03447 197 RDPLDALLWRAAREGE--PSWDSPFGP-GRPGWHIECSAIATNRLG 239 (411)
T ss_pred CCCcccceeCCCCCCC--CCccCCCCC-CCChhHHHHHHHHHHHcC
Confidence 4589997 5886 678888985 8999 9999988777665
No 63
>cd03420 SirA_RHOD_Pry_redox SirA_RHOD_Pry_redox. SirA-like domain located within a multidomain protein of unknown function. Other domains include RHOD (rhodanese homology domain), and Pry_redox (pyridine nucleotide-disulphide oxidoreductase) as well as a C-terminal domain that corresponds to COG2210. This fold is referred to as a two-layered alpha/beta sandwich, structurally similar to that of translation initiation factor 3.
Probab=21.93 E-value=1.7e+02 Score=22.18 Aligned_cols=38 Identities=13% Similarity=0.136 Sum_probs=28.5
Q ss_pred HhCCCCcEEEEEEeCCCCcccChhHHHHHHHhcCCeEEehh
Q 018477 80 LAGLEPVAVLCEIVDDDGSMARLPKLRQFAQTENLKIISIA 120 (355)
Q Consensus 80 lAgl~Paavi~ei~~~dg~~a~~~~~~~fA~~h~L~ivti~ 120 (355)
+..+.|..++.-+.++. ....++..||+++|-.+++..
T Consensus 20 l~~l~~G~~l~V~~d~~---~a~~di~~~~~~~G~~~~~~~ 57 (69)
T cd03420 20 IDKLQDGEQLEVKASDP---GFARDAQAWCKSTGNTLISLE 57 (69)
T ss_pred HHcCCCCCEEEEEECCc---cHHHHHHHHHHHcCCEEEEEE
Confidence 34667777777666664 356889999999999998655
No 64
>PF01212 Beta_elim_lyase: Beta-eliminating lyase; InterPro: IPR001597 This domain is found in many tryptophanases (tryptophan indole-lyase, TNase), tyrosine phenol-lyases (TPL) and threonine aldolases. It is involved in the degradation of amino acids. The glycine cleavage system is composed of four proteins: P, T, L and H. In Bacillus subtilis, the P 'protein' is an heterodimer of two subunits. The glycine cleavage system catalyses the degradation of glycine. The P protein binds the alpha-amino group of glycine through its pyridoxal phosphate cofactor; CO(2) is released and the remaining methylamine moiety is then transferred to the lipoamide cofactor of the H protein; GO: 0016829 lyase activity, 0006520 cellular amino acid metabolic process; PDB: 3PJ0_C 2C44_C 2V0Y_A 2OQX_A 2V1P_A 1AX4_B 3LWS_A 1C7G_A 1V72_A 2YHK_B ....
Probab=21.89 E-value=81 Score=30.83 Aligned_cols=70 Identities=23% Similarity=0.317 Sum_probs=41.7
Q ss_pred ccceeeeecCCcccccchhHHHHHHHHHhC---CCCcEEEEEEeCCC--Cccc---ChhHHHHHHHhcCCeE-EehhhHH
Q 018477 53 HIFPLKYREGGVLKRAGHTEASVDLAVLAG---LEPVAVLCEIVDDD--GSMA---RLPKLRQFAQTENLKI-ISIADLI 123 (355)
Q Consensus 53 Hv~Pl~a~~ggvl~R~GhtEaavdL~rlAg---l~Paavi~ei~~~d--g~~a---~~~~~~~fA~~h~L~i-vti~dli 123 (355)
++.|+...++|.+ .+..-|.+ .+..+ .+|..|..|.-.+. |+.- ...++.++|++||+++ ++.+-|.
T Consensus 94 ~~~~l~~~~~G~l-~~~~l~~~---~~~~~~h~~~~~~v~le~t~~~~GG~~~s~~el~ai~~~a~~~gl~lhmDGARl~ 169 (290)
T PF01212_consen 94 KLIPLPSDDDGKL-TPEDLEAA---IEEHGAHHPQPAVVSLENTTELAGGTVYSLEELRAISELAREHGLPLHMDGARLA 169 (290)
T ss_dssp EEEEEBECTGTBB--HHHHHHH---HHHHTGTSGGEEEEEEESSBTTTTSB---HHHHHHHHHHHHHHT-EEEEEETTHH
T ss_pred EEEECCCcccCCC-CHHHHHHH---hhhccccCCCccEEEEEecCcCCCCeeCCHHHHHHHHHHHHhCceEEEEehhhHH
Confidence 3566666654443 22233333 33333 46888888999887 8655 5556778999999997 4666665
Q ss_pred HHH
Q 018477 124 RYR 126 (355)
Q Consensus 124 ~yr 126 (355)
+.-
T Consensus 170 ~a~ 172 (290)
T PF01212_consen 170 NAA 172 (290)
T ss_dssp HHH
T ss_pred Hhh
Confidence 543
No 65
>KOG2931 consensus Differentiation-related gene 1 protein (NDR1 protein), related proteins [Function unknown]
Probab=21.87 E-value=4.4e+02 Score=26.71 Aligned_cols=59 Identities=22% Similarity=0.280 Sum_probs=31.1
Q ss_pred CceEEEEEECcCCCCCcceEEeccCCccccccCCCCCCChHHHHHHHHHHHHcCCEEEEEEeCCCCCC
Q 018477 159 GIEHIAMVKGEIGDGQDILVRVHSECLTGDIFGSARCDCGNQLALAMKQIEAAGRGVLVYLRGHEGRG 226 (355)
Q Consensus 159 g~eH~ALv~Gdi~~~~~vlVRVHS~cltgDvfgs~~CdCg~qL~~Al~~Ia~~G~GVlvYLr~qEgrg 226 (355)
|.-|+ .|.||+++..|+++-+|-.-+ +...|=-+--..-.|+.|.++ ..||--+..|..
T Consensus 32 G~v~V-~V~Gd~~~~kpaiiTyhDlgl-----N~~scFq~ff~~p~m~ei~~~---fcv~HV~~PGqe 90 (326)
T KOG2931|consen 32 GVVHV-TVYGDPKGNKPAIITYHDLGL-----NHKSCFQGFFNFPDMAEILEH---FCVYHVDAPGQE 90 (326)
T ss_pred ccEEE-EEecCCCCCCceEEEeccccc-----chHhHhHHhhcCHhHHHHHhh---eEEEecCCCccc
Confidence 34443 356888777788888884311 121121122234457777776 455654455533
No 66
>cd00291 SirA_YedF_YeeD SirA, YedF, and YeeD. Two-layered alpha/beta sandwich domain. SirA (also known as UvrY, and YhhP) belongs to a family of bacterial two-component response regulators that controls secondary metabolism and virulence. The other member of this two-component system is a sensor kinase called BarA which phosphorylates SirA. A variety of microorganisms have similar proteins, all of which contain a common CPxP sequence motif in the N-terminal region. YhhP is suggested to be important for normal cell division and growth in rich nutrient medium. Moreover, despite a low primary sequence similarity, the YccP structure closely resembles the non-homologous C-terminal RNA-binding domain of E. coli translation initiation factor IF3. The signature CPxP motif serves to stabilize the N-terminal helix as part of the N-capping box and might be important in mRNA-binding.
Probab=21.72 E-value=1.8e+02 Score=21.39 Aligned_cols=40 Identities=18% Similarity=0.363 Sum_probs=29.9
Q ss_pred HHhCCCCcEEEEEEeCCCCcccChhHHHHHHHhcCCeEEehhh
Q 018477 79 VLAGLEPVAVLCEIVDDDGSMARLPKLRQFAQTENLKIISIAD 121 (355)
Q Consensus 79 rlAgl~Paavi~ei~~~dg~~a~~~~~~~fA~~h~L~ivti~d 121 (355)
.+..+.+..++.-++++. ....++.+|++++|..++++.+
T Consensus 19 ~l~~l~~g~~l~v~~d~~---~~~~~i~~~~~~~g~~~~~~~~ 58 (69)
T cd00291 19 ALEKLKSGEVLEVLLDDP---GAVEDIPAWAKETGHEVLEVEE 58 (69)
T ss_pred HHhcCCCCCEEEEEecCC---cHHHHHHHHHHHcCCEEEEEEE
Confidence 455677777777777663 2578899999999999886553
No 67
>TIGR02379 ECA_wecE TDP-4-keto-6-deoxy-D-glucose transaminase. This family consists of TDP-4-keto-6-deoxy-D-glucose transaminases, the WecE (formerly RffA) protein of enterobacterial common antigen (ECA) biosynthesis, from enterobacteria. It also includes closely matching sequence from species not expected to make ECA, but which contain other genes for the biosynthesis of TDP-4-keto-6-deoxy-D-Glc, an intermediate in the biosynthesis of other compounds as well and the substrate of WecA. This family belongs to the DegT/DnrJ/EryC1/StrS aminotransferase family (pfam01041).
Probab=21.44 E-value=1.8e+02 Score=29.25 Aligned_cols=32 Identities=19% Similarity=0.278 Sum_probs=26.2
Q ss_pred CCcEEEEEEeCCCCcccChhHHHHHHHhcCCeEE
Q 018477 84 EPVAVLCEIVDDDGSMARLPKLRQFAQTENLKII 117 (355)
Q Consensus 84 ~Paavi~ei~~~dg~~a~~~~~~~fA~~h~L~iv 117 (355)
++.+|+ ..+..|.+.+.+++.++|++||+++|
T Consensus 119 ~tk~Ii--p~~~~G~~~d~~~I~~la~~~~i~vI 150 (376)
T TIGR02379 119 RTKAIV--PVHYAGVACDMDTIMALANKHQLFVI 150 (376)
T ss_pred CceEEE--EeCCCCCccCHHHHHHHHHHCCCEEE
Confidence 445554 46678999999999999999999987
No 68
>COG0399 WecE Predicted pyridoxal phosphate-dependent enzyme apparently involved in regulation of cell wall biogenesis [Cell envelope biogenesis, outer membrane]
Probab=21.18 E-value=1.1e+02 Score=31.28 Aligned_cols=31 Identities=19% Similarity=0.295 Sum_probs=26.0
Q ss_pred CcEEEEEEeCCCCcccChhHHHHHHHhcCCeEE
Q 018477 85 PVAVLCEIVDDDGSMARLPKLRQFAQTENLKII 117 (355)
Q Consensus 85 Paavi~ei~~~dg~~a~~~~~~~fA~~h~L~iv 117 (355)
+-|+|+ +.=-|.+.+++.+.++|++|||++|
T Consensus 123 tKAIip--Vhl~G~~~dm~~i~~la~~~~l~vI 153 (374)
T COG0399 123 TKAIIP--VHLAGQPCDMDAIMALAKRHGLPVI 153 (374)
T ss_pred CeEEEE--ehhccCCCCHHHHHHHHHHcCCeEE
Confidence 456665 5556889999999999999999998
No 69
>PRK11706 TDP-4-oxo-6-deoxy-D-glucose transaminase; Provisional
Probab=21.03 E-value=1.8e+02 Score=28.79 Aligned_cols=32 Identities=19% Similarity=0.321 Sum_probs=24.3
Q ss_pred CCcEEEEEEeCCCCcccChhHHHHHHHhcCCeEE
Q 018477 84 EPVAVLCEIVDDDGSMARLPKLRQFAQTENLKII 117 (355)
Q Consensus 84 ~Paavi~ei~~~dg~~a~~~~~~~fA~~h~L~iv 117 (355)
.+.+++ +++-.|...+.+++.++|++||+++|
T Consensus 119 ~tk~i~--~~~~~G~~~~~~~i~~la~~~~i~vI 150 (375)
T PRK11706 119 KTRAIV--PVHYAGVACEMDTIMALAKKHNLFVV 150 (375)
T ss_pred CCeEEE--EeCCCCCccCHHHHHHHHHHcCCEEE
Confidence 344554 35667888888999999999998877
No 70
>cd03423 SirA SirA (also known as UvrY, and YhhP) belongs to a family of two-component response regulators that controls secondary metabolism and virulence. The other member of this two-component system is a sensor kinase called BarA which phosphorylates SirA. A variety of microorganisms have similar proteins, all of which contain a common CPxP sequence motif in the N-terminal region. YhhP is thought to be important for normal cell division and growth in rich nutrient medium. Moreover, despite a low primary sequence similarity, the YccP structure closely resembles the non-homologous C-terminal RNA-binding domain of E. coli translation initiation factor IF3. The signature CPxP motif serves to stabilize the N-terminal helix as part of the N-capping box and might be important in mRNA-binding.
Probab=20.74 E-value=1.9e+02 Score=21.81 Aligned_cols=39 Identities=10% Similarity=0.211 Sum_probs=28.4
Q ss_pred HhCCCCcEEEEEEeCCCCcccChhHHHHHHHhcCCeEEehhh
Q 018477 80 LAGLEPVAVLCEIVDDDGSMARLPKLRQFAQTENLKIISIAD 121 (355)
Q Consensus 80 lAgl~Paavi~ei~~~dg~~a~~~~~~~fA~~h~L~ivti~d 121 (355)
|..+.+..++.-++++.+ ...++.+||++.|-.++...+
T Consensus 20 l~~l~~G~~l~V~~dd~~---s~~di~~~~~~~g~~~~~~~~ 58 (69)
T cd03423 20 VRKMKPGDTLLVLATDPS---TTRDIPKFCTFLGHELLAQET 58 (69)
T ss_pred HHcCCCCCEEEEEeCCCc---hHHHHHHHHHHcCCEEEEEEE
Confidence 345666667766666643 678899999999999986553
No 71
>cd06454 KBL_like KBL_like; this family belongs to the pyridoxal phosphate (PLP)-dependent aspartate aminotransferase superfamily (fold I). The major groups in this CD corresponds to serine palmitoyltransferase (SPT), 5-aminolevulinate synthase (ALAS), 8-amino-7-oxononanoate synthase (AONS), and 2-amino-3-ketobutyrate CoA ligase (KBL). SPT is responsible for the condensation of L-serine with palmitoyl-CoA to produce 3-ketodihydrospingosine, the reaction of the first step in sphingolipid biosynthesis. ALAS is involved in heme biosynthesis; it catalyzes the synthesis of 5-aminolevulinic acid from glycine and succinyl-coenzyme A. AONS catalyses the decarboxylative condensation of l-alanine and pimeloyl-CoA in the first committed step of biotin biosynthesis. KBL catalyzes the second reaction step of the metabolic degradation pathway for threonine converting 2-amino-3-ketobutyrate, to glycine and acetyl-CoA. The members of this CD are widely found in all three forms of life.
Probab=20.03 E-value=1.4e+02 Score=28.38 Aligned_cols=34 Identities=26% Similarity=0.352 Sum_probs=27.9
Q ss_pred CCcEEEEEEe-CCCCcccChhHHHHHHHhcCCeEE
Q 018477 84 EPVAVLCEIV-DDDGSMARLPKLRQFAQTENLKII 117 (355)
Q Consensus 84 ~Paavi~ei~-~~dg~~a~~~~~~~fA~~h~L~iv 117 (355)
.++.++++-. +..|.+...+++.++|++||++++
T Consensus 132 ~~~~v~~~~~~~~tG~~~~~~~i~~~~~~~~~~li 166 (349)
T cd06454 132 GKKLIVTEGVYSMDGDIAPLPELVDLAKKYGAILF 166 (349)
T ss_pred CCeEEEEeccccCCCCccCHHHHHHHHHHcCCEEE
Confidence 4666776554 467999999999999999999987
No 72
>cd00614 CGS_like CGS_like: Cystathionine gamma-synthase is a PLP dependent enzyme and catalyzes the committed step of methionine biosynthesis. This pathway is unique to microorganisms and plants, rendering the enzyme an attractive target for the development of antimicrobials and herbicides. This subgroup also includes cystathionine gamma-lyases (CGL), O-acetylhomoserine sulfhydrylases and O-acetylhomoserine thiol lyases. CGL's are very similar to CGS's. Members of this group are widely distributed among all three forms of life.
Probab=20.01 E-value=1.8e+02 Score=28.91 Aligned_cols=34 Identities=12% Similarity=0.174 Sum_probs=29.0
Q ss_pred CCcEEEEEEe-CCCCcccChhHHHHHHHhcCCeEE
Q 018477 84 EPVAVLCEIV-DDDGSMARLPKLRQFAQTENLKII 117 (355)
Q Consensus 84 ~Paavi~ei~-~~dg~~a~~~~~~~fA~~h~L~iv 117 (355)
.+.+|++|-. |..|.+.+.+++.++|++||++++
T Consensus 125 ~~~~v~~e~~~np~g~~~dl~~i~~la~~~g~~li 159 (369)
T cd00614 125 ETKLVYVESPTNPTLKVVDIEAIAELAHEHGALLV 159 (369)
T ss_pred CCeEEEEECCCCCCCeecCHHHHHHHHHHcCCEEE
Confidence 5678888765 457999999999999999999887
Done!