BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 018478
(355 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|4FCG|A Chain A, Structure Of The Leucine-Rich Repeat Domain Of The Type
Iii Effector Xcv3220 (Xopl)
Length = 328
Score = 49.7 bits (117), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 43/140 (30%), Positives = 76/140 (54%), Gaps = 9/140 (6%)
Query: 67 LEELCISSCRSLTSIFSKNELSATLESLEVGNLPPSLKSLRVQGCSKLESIAETLDNSTS 126
L EL I +C LT + L++T S E L +L+SLR++ + + S+ ++ N +
Sbjct: 152 LRELSIRACPELTEL--PEPLASTDASGEHQGLV-NLQSLRLE-WTGIRSLPASIANLQN 207
Query: 127 LETIHIFYCENMKILPSGLHNLRQLQEISIEGCGNLESFPE--GGLPCAKLKEVVIRWCG 184
L+++ I + L +H+L +L+E+ + GC L ++P GG A LK ++++ C
Sbjct: 208 LKSLKIRNSP-LSALGPAIHHLPKLEELDLRGCTALRNYPPIFGGR--APLKRLILKDCS 264
Query: 185 RLEALPKGLHNLKSLQKLTI 204
L LP +H L L+KL +
Sbjct: 265 NLLTLPLDIHRLTQLEKLDL 284
Score = 43.5 bits (101), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 25/88 (28%), Positives = 42/88 (47%), Gaps = 11/88 (12%)
Query: 90 TLESLEVGNLP-----------PSLKSLRVQGCSKLESIAETLDNSTSLETIHIFYCENM 138
L+SL++ N P P L+ L ++GC+ L + L+ + + C N+
Sbjct: 207 NLKSLKIRNSPLSALGPAIHHLPKLEELDLRGCTALRNYPPIFGGRAPLKRLILKDCSNL 266
Query: 139 KILPSGLHNLRQLQEISIEGCGNLESFP 166
LP +H L QL+++ + GC NL P
Sbjct: 267 LTLPLDIHRLTQLEKLDLRGCVNLSRLP 294
Score = 40.4 bits (93), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 37/132 (28%), Positives = 59/132 (44%), Gaps = 23/132 (17%)
Query: 111 CSKLESIAETLDNSTSLETIHIFYCENMKILPSGLHNLRQLQEISIEGCGNLESFPEGGL 170
+ L + +T LET+ ++ LP+ + +L +L+E+SI C L PE
Sbjct: 113 AAGLXELPDTXQQFAGLETL-TLARNPLRALPASIASLNRLRELSIRACPELTELPE--- 168
Query: 171 PCA------------KLKEVVIRWCGRLEALPKGLHNLKSLQKLTIGKGGLEEDG----- 213
P A L+ + + W G + +LP + NL++L+ L I L G
Sbjct: 169 PLASTDASGEHQGLVNLQSLRLEWTG-IRSLPASIANLQNLKSLKIRNSPLSALGPAIHH 227
Query: 214 LPTNLHSLDIRG 225
LP L LD+RG
Sbjct: 228 LP-KLEELDLRG 238
>pdb|4DXY|A Chain A, Crystal Structures Of Cyp101d2 Y96a Mutant
Length = 417
Score = 29.3 bits (64), Expect = 3.9, Method: Compositional matrix adjust.
Identities = 18/47 (38%), Positives = 22/47 (46%), Gaps = 8/47 (17%)
Query: 214 LPTNLHSLDIRGNMEIWK--------SMIEWGQGFHRFSSLRELRIE 252
LPT LH LD N E WK S +G G HR + + R+E
Sbjct: 327 LPTALHGLDDAANPEPWKLDFSRRSISHSTFGGGPHRCAGMHLARME 373
>pdb|3NV5|A Chain A, Crystal Structure Of Cytochrome P450 Cyp101d2
pdb|3NV6|A Chain A, Crystal Structure Of Camphor-Bound Cyp101d2
Length = 452
Score = 29.3 bits (64), Expect = 3.9, Method: Compositional matrix adjust.
Identities = 18/47 (38%), Positives = 22/47 (46%), Gaps = 8/47 (17%)
Query: 214 LPTNLHSLDIRGNMEIWK--------SMIEWGQGFHRFSSLRELRIE 252
LPT LH LD N E WK S +G G HR + + R+E
Sbjct: 362 LPTALHGLDDAANPEPWKLDFSRRSISHSTFGGGPHRCAGMHLARME 408
>pdb|3RIZ|A Chain A, Crystal Structure Of The Plant Steroid Receptor Bri1
Ectodomain
pdb|3RJ0|A Chain A, Plant Steroid Receptor Bri1 Ectodomain In Complex With
Brassinolide
Length = 772
Score = 28.5 bits (62), Expect = 6.2, Method: Compositional matrix adjust.
Identities = 33/150 (22%), Positives = 63/150 (42%), Gaps = 10/150 (6%)
Query: 60 RRYTSYLLEELCISSCRSLTSIFSKNELSATLESLEVGNLPPSLKSLRVQGCSKLESIAE 119
++ L E L S LT S N S + N +L+ L +Q I
Sbjct: 350 NEFSGELPESLTNLSASLLTLDLSSNNFSGPILPNLCQNPKNTLQELYLQNNGFTGKIPP 409
Query: 120 TLDNSTSLETIHIFYCENMKILPSGLHNLRQLQEIS-----IEGCGNLESFPEGGLPCAK 174
TL N + L ++H+ + +PS L +L +L+++ +EG P+ +
Sbjct: 410 TLSNCSELVSLHLSFNYLSGTIPSSLGSLSKLRDLKLWLNMLEG-----EIPQELMYVKT 464
Query: 175 LKEVVIRWCGRLEALPKGLHNLKSLQKLTI 204
L+ +++ + +P GL N +L +++
Sbjct: 465 LETLILDFNDLTGEIPSGLSNCTNLNWISL 494
>pdb|3RGX|A Chain A, Structural Insight Into Brassinosteroid Perception By Bri1
pdb|3RGZ|A Chain A, Structural Insight Into Brassinosteroid Perception By Bri1
Length = 768
Score = 28.5 bits (62), Expect = 6.2, Method: Compositional matrix adjust.
Identities = 33/150 (22%), Positives = 63/150 (42%), Gaps = 10/150 (6%)
Query: 60 RRYTSYLLEELCISSCRSLTSIFSKNELSATLESLEVGNLPPSLKSLRVQGCSKLESIAE 119
++ L E L S LT S N S + N +L+ L +Q I
Sbjct: 353 NEFSGELPESLTNLSASLLTLDLSSNNFSGPILPNLCQNPKNTLQELYLQNNGFTGKIPP 412
Query: 120 TLDNSTSLETIHIFYCENMKILPSGLHNLRQLQEIS-----IEGCGNLESFPEGGLPCAK 174
TL N + L ++H+ + +PS L +L +L+++ +EG P+ +
Sbjct: 413 TLSNCSELVSLHLSFNYLSGTIPSSLGSLSKLRDLKLWLNMLEG-----EIPQELMYVKT 467
Query: 175 LKEVVIRWCGRLEALPKGLHNLKSLQKLTI 204
L+ +++ + +P GL N +L +++
Sbjct: 468 LETLILDFNDLTGEIPSGLSNCTNLNWISL 497
>pdb|4ECN|A Chain A, Crystal Structure Of A Leucine-Rich Repeat Protein
(Bt_0210) From Bacteroides Thetaiotaomicron Vpi-5482 At
2.80 A Resolution
Length = 876
Score = 27.7 bits (60), Expect = 9.0, Method: Compositional matrix adjust.
Identities = 24/89 (26%), Positives = 36/89 (40%), Gaps = 15/89 (16%)
Query: 123 NSTSLETIHIFYCENMKILPSGLHNLRQLQEISIEGCGNLESFPEGGLPCAKLKEVVIRW 182
N L + ++ C N LP L++L +LQ ++I C G+ A+LK R
Sbjct: 489 NLKDLTDVELYNCPNXTQLPDFLYDLPELQSLNI-ACNR-------GISAAQLKADWTRL 540
Query: 183 CGRLEALPKGLHNLKSLQKLTIGKGGLEE 211
+ PK +Q G LEE
Sbjct: 541 ADDEDTGPK-------IQIFYXGYNNLEE 562
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.320 0.138 0.421
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 9,853,213
Number of Sequences: 62578
Number of extensions: 378899
Number of successful extensions: 735
Number of sequences better than 100.0: 10
Number of HSP's better than 100.0 without gapping: 4
Number of HSP's successfully gapped in prelim test: 6
Number of HSP's that attempted gapping in prelim test: 718
Number of HSP's gapped (non-prelim): 17
length of query: 355
length of database: 14,973,337
effective HSP length: 100
effective length of query: 255
effective length of database: 8,715,537
effective search space: 2222461935
effective search space used: 2222461935
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 52 (24.6 bits)