Query 018478
Match_columns 355
No_of_seqs 167 out of 2319
Neff 10.1
Searched_HMMs 46136
Date Fri Mar 29 09:21:36 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/018478.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/018478hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 PLN03210 Resistant to P. syrin 99.9 2.3E-22 5E-27 208.3 20.6 253 62-339 631-909 (1153)
2 PLN00113 leucine-rich repeat r 99.9 3.1E-22 6.8E-27 206.2 16.9 105 101-205 164-268 (968)
3 PLN03210 Resistant to P. syrin 99.9 8.8E-22 1.9E-26 204.0 18.0 287 5-337 633-944 (1153)
4 PLN00113 leucine-rich repeat r 99.9 8.2E-22 1.8E-26 203.1 17.4 290 5-334 68-367 (968)
5 KOG4194 Membrane glycoprotein 99.8 2.6E-22 5.5E-27 182.2 2.4 216 102-334 198-427 (873)
6 KOG4194 Membrane glycoprotein 99.8 3.8E-21 8.3E-26 174.7 1.1 278 9-333 81-375 (873)
7 KOG0444 Cytoskeletal regulator 99.8 2.3E-20 4.9E-25 171.1 -4.0 281 29-353 103-395 (1255)
8 PRK15387 E3 ubiquitin-protein 99.7 6.1E-16 1.3E-20 151.0 16.4 129 8-182 203-331 (788)
9 PRK15370 E3 ubiquitin-protein 99.7 3.3E-16 7.1E-21 153.5 10.2 243 6-311 178-426 (754)
10 PRK15387 E3 ubiquitin-protein 99.6 1.8E-15 3.9E-20 147.7 13.7 236 6-314 222-458 (788)
11 KOG0444 Cytoskeletal regulator 99.6 9.1E-18 2E-22 154.2 -4.2 266 4-313 101-375 (1255)
12 KOG0618 Serine/threonine phosp 99.6 3.2E-17 7E-22 156.5 -1.8 218 98-335 238-488 (1081)
13 KOG0472 Leucine-rich repeat pr 99.6 1.9E-18 4.1E-23 150.9 -9.5 190 102-310 115-307 (565)
14 KOG0472 Leucine-rich repeat pr 99.6 1.6E-18 3.5E-23 151.3 -11.0 259 29-335 45-309 (565)
15 PRK15370 E3 ubiquitin-protein 99.6 3.9E-15 8.4E-20 146.0 10.1 243 29-335 178-427 (754)
16 KOG0618 Serine/threonine phosp 99.6 1.2E-16 2.7E-21 152.6 -3.9 192 102-312 288-488 (1081)
17 KOG4237 Extracellular matrix p 99.4 9.4E-16 2E-20 133.9 -6.4 277 18-334 57-357 (498)
18 KOG0617 Ras suppressor protein 99.3 3.4E-14 7.4E-19 110.8 -4.8 160 123-318 31-190 (264)
19 KOG0617 Ras suppressor protein 99.3 4.3E-14 9.3E-19 110.3 -4.4 155 101-265 33-192 (264)
20 cd00116 LRR_RI Leucine-rich re 99.3 7.6E-13 1.6E-17 119.5 1.3 113 216-334 193-318 (319)
21 KOG4341 F-box protein containi 99.2 9E-13 1.9E-17 116.3 -4.2 283 29-339 138-442 (483)
22 KOG4237 Extracellular matrix p 99.1 1.4E-12 3.1E-17 114.3 -3.8 126 7-160 68-199 (498)
23 cd00116 LRR_RI Leucine-rich re 99.1 4E-11 8.7E-16 108.2 2.0 238 62-338 20-293 (319)
24 KOG4658 Apoptotic ATPase [Sign 99.1 3.5E-10 7.5E-15 113.3 7.7 126 29-182 523-651 (889)
25 KOG4658 Apoptotic ATPase [Sign 99.0 2.8E-10 6E-15 113.9 5.3 229 95-339 539-786 (889)
26 KOG0532 Leucine-rich repeat (L 98.9 4.5E-11 9.9E-16 109.5 -3.6 190 103-333 77-270 (722)
27 KOG4341 F-box protein containi 98.7 3.6E-10 7.8E-15 100.1 -4.9 256 66-339 139-417 (483)
28 COG4886 Leucine-rich repeat (L 98.6 3E-08 6.6E-13 92.3 5.1 170 102-310 117-287 (394)
29 PRK15386 type III secretion pr 98.6 3.2E-07 6.8E-12 83.4 11.0 90 124-225 51-141 (426)
30 PRK15386 type III secretion pr 98.6 1.6E-07 3.4E-12 85.3 9.1 132 5-182 51-186 (426)
31 PF14580 LRR_9: Leucine-rich r 98.6 4.9E-08 1.1E-12 79.0 3.4 122 64-204 18-147 (175)
32 PF14580 LRR_9: Leucine-rich r 98.5 6.7E-08 1.4E-12 78.2 2.5 129 101-253 19-149 (175)
33 COG4886 Leucine-rich repeat (L 98.5 8.8E-08 1.9E-12 89.2 3.6 166 64-253 115-286 (394)
34 KOG3207 Beta-tubulin folding c 98.5 4E-08 8.7E-13 87.8 1.1 149 172-335 145-313 (505)
35 KOG1259 Nischarin, modulator o 98.5 3.8E-08 8.1E-13 84.1 0.7 99 101-205 284-382 (490)
36 KOG1259 Nischarin, modulator o 98.4 9.1E-08 2E-12 81.8 1.6 227 63-316 180-414 (490)
37 KOG0532 Leucine-rich repeat (L 98.4 9.2E-09 2E-13 94.7 -4.8 152 100-263 97-251 (722)
38 KOG3207 Beta-tubulin folding c 98.4 4.9E-08 1.1E-12 87.3 -0.2 91 214-310 244-336 (505)
39 KOG2120 SCF ubiquitin ligase, 98.2 2.6E-08 5.7E-13 84.9 -5.7 180 102-310 186-373 (419)
40 PF13855 LRR_8: Leucine rich r 98.2 3E-06 6.4E-11 56.2 4.8 57 245-310 2-59 (61)
41 KOG2120 SCF ubiquitin ligase, 98.1 1.1E-07 2.5E-12 81.1 -3.8 159 5-184 209-374 (419)
42 PF13855 LRR_8: Leucine rich r 98.1 3E-06 6.5E-11 56.2 3.3 56 102-159 2-59 (61)
43 KOG1909 Ran GTPase-activating 98.1 7.6E-07 1.7E-11 77.7 0.4 230 100-335 29-310 (382)
44 PLN03150 hypothetical protein; 98.1 8.8E-06 1.9E-10 79.9 7.0 91 103-193 420-510 (623)
45 KOG1909 Ran GTPase-activating 98.0 3.3E-06 7.1E-11 73.8 2.5 130 173-311 157-309 (382)
46 KOG1859 Leucine-rich repeat pr 97.9 2.4E-07 5.1E-12 88.0 -7.4 120 102-227 165-290 (1096)
47 PLN03150 hypothetical protein; 97.8 4.1E-05 8.8E-10 75.3 7.3 91 98-188 439-530 (623)
48 KOG0531 Protein phosphatase 1, 97.8 2E-06 4.3E-11 80.5 -1.7 190 98-310 92-287 (414)
49 KOG1947 Leucine rich repeat pr 97.8 2.5E-06 5.5E-11 81.4 -2.2 241 64-339 187-443 (482)
50 PF12799 LRR_4: Leucine Rich r 97.8 5.3E-05 1.1E-09 46.2 4.2 39 101-141 1-39 (44)
51 PF12799 LRR_4: Leucine Rich r 97.7 5.9E-05 1.3E-09 46.0 3.6 40 276-317 1-40 (44)
52 KOG0531 Protein phosphatase 1, 97.7 4.8E-06 1E-10 78.0 -2.0 144 98-253 115-264 (414)
53 KOG3665 ZYG-1-like serine/thre 97.6 2.8E-05 6E-10 76.6 2.0 126 101-229 122-263 (699)
54 KOG1947 Leucine rich repeat pr 97.6 9.2E-06 2E-10 77.5 -1.8 62 101-162 243-308 (482)
55 KOG2982 Uncharacterized conser 97.3 0.00047 1E-08 59.5 5.8 183 123-317 69-266 (418)
56 KOG3665 ZYG-1-like serine/thre 97.2 0.00016 3.5E-09 71.3 2.5 132 29-184 122-261 (699)
57 KOG2982 Uncharacterized conser 97.1 0.00032 6.9E-09 60.5 2.5 195 99-306 69-285 (418)
58 KOG1644 U2-associated snRNP A' 97.0 0.0018 3.8E-08 52.9 5.7 81 100-184 41-124 (233)
59 KOG1644 U2-associated snRNP A' 97.0 0.0017 3.7E-08 52.9 5.4 103 216-334 42-151 (233)
60 KOG2123 Uncharacterized conser 96.8 6.1E-05 1.3E-09 64.1 -4.5 99 64-179 18-123 (388)
61 KOG1859 Leucine-rich repeat pr 96.6 0.00015 3.3E-09 69.6 -3.8 189 124-334 83-290 (1096)
62 KOG4579 Leucine-rich repeat (L 96.4 0.0003 6.5E-09 53.7 -2.3 78 102-182 54-132 (177)
63 KOG4579 Leucine-rich repeat (L 95.9 0.00065 1.4E-08 51.9 -2.7 100 102-205 28-131 (177)
64 KOG2123 Uncharacterized conser 95.5 0.00095 2.1E-08 57.1 -3.4 40 98-138 60-101 (388)
65 COG5238 RNA1 Ran GTPase-activa 95.4 0.0069 1.5E-07 51.8 1.4 151 100-253 29-223 (388)
66 PF13306 LRR_5: Leucine rich r 95.0 0.15 3.3E-06 38.9 7.7 116 60-199 7-128 (129)
67 COG5238 RNA1 Ran GTPase-activa 94.9 0.072 1.6E-06 45.8 5.9 184 62-256 27-253 (388)
68 PF13306 LRR_5: Leucine rich r 94.3 0.37 8E-06 36.6 8.5 97 29-158 12-112 (129)
69 PF00560 LRR_1: Leucine Rich R 94.3 0.027 5.8E-07 28.5 1.3 20 102-122 1-20 (22)
70 KOG2739 Leucine-rich acidic nu 93.8 0.037 7.9E-07 47.1 1.9 60 99-159 63-126 (260)
71 PF13504 LRR_7: Leucine rich r 93.5 0.058 1.3E-06 25.3 1.5 15 301-316 2-16 (17)
72 KOG3864 Uncharacterized conser 93.1 0.013 2.8E-07 47.9 -1.7 65 4-79 123-190 (221)
73 KOG3864 Uncharacterized conser 92.1 0.026 5.7E-07 46.2 -1.2 41 217-260 126-166 (221)
74 KOG2739 Leucine-rich acidic nu 91.5 0.14 3.1E-06 43.6 2.4 105 216-335 43-155 (260)
75 smart00367 LRR_CC Leucine-rich 86.3 0.42 9.1E-06 25.1 1.1 18 322-339 1-18 (26)
76 smart00369 LRR_TYP Leucine-ric 85.1 0.62 1.4E-05 24.3 1.4 19 300-319 2-20 (26)
77 smart00370 LRR Leucine-rich re 85.1 0.62 1.4E-05 24.3 1.4 19 300-319 2-20 (26)
78 smart00364 LRR_BAC Leucine-ric 73.7 2.2 4.7E-05 22.5 1.1 16 277-293 3-18 (26)
79 smart00365 LRR_SD22 Leucine-ri 56.1 10 0.00022 20.0 1.6 17 300-317 2-18 (26)
80 PF05725 FNIP: FNIP Repeat; I 52.1 33 0.00071 20.5 3.7 15 318-332 29-43 (44)
81 KOG0473 Leucine-rich repeat pr 46.7 0.75 1.6E-05 38.9 -5.4 83 214-311 40-122 (326)
82 PF13516 LRR_6: Leucine Rich r 45.6 25 0.00054 17.6 2.2 14 216-229 2-15 (24)
83 KOG0473 Leucine-rich repeat pr 41.6 0.61 1.3E-05 39.4 -6.7 57 124-182 64-120 (326)
84 KOG3763 mRNA export factor TAP 30.3 24 0.00052 34.0 0.9 34 4-38 216-253 (585)
85 KOG3763 mRNA export factor TAP 26.7 35 0.00075 32.9 1.3 15 174-188 271-285 (585)
86 smart00368 LRR_RI Leucine rich 25.8 42 0.00092 17.7 1.1 12 101-112 2-13 (28)
No 1
>PLN03210 Resistant to P. syringae 6; Provisional
Probab=99.90 E-value=2.3e-22 Score=208.28 Aligned_cols=253 Identities=22% Similarity=0.368 Sum_probs=159.8
Q ss_pred cccccccEEEecCCCccchhccccccchhccccccCCCCCcccEEEEccCcchhchhhhccCCCCCcEEEeeccCCcCcc
Q 018478 62 YTSYLLEELCISSCRSLTSIFSKNELSATLESLEVGNLPPSLKSLRVQGCSKLESIAETLDNSTSLETIHIFYCENMKIL 141 (355)
Q Consensus 62 ~~~~~L~~L~l~~~~~l~~~~~~n~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~ 141 (355)
..+++|+.|+++++..++.+ +....+++|+.|++++|..+..+|..++.+++|+.|++++|..++.+
T Consensus 631 ~~l~~Lk~L~Ls~~~~l~~i-------------p~ls~l~~Le~L~L~~c~~L~~lp~si~~L~~L~~L~L~~c~~L~~L 697 (1153)
T PLN03210 631 HSLTGLRNIDLRGSKNLKEI-------------PDLSMATNLETLKLSDCSSLVELPSSIQYLNKLEDLDMSRCENLEIL 697 (1153)
T ss_pred ccCCCCCEEECCCCCCcCcC-------------CccccCCcccEEEecCCCCccccchhhhccCCCCEEeCCCCCCcCcc
Confidence 44677777777776666666 65555678888888888777777777777888888888887777777
Q ss_pred cccccCCCCCceEeccccCCCcCCCCCCCCCCCcceEEEccccCcCcccccccCCCCCceEEEee---cCc-------CC
Q 018478 142 PSGLHNLRQLQEISIEGCGNLESFPEGGLPCAKLKEVVIRWCGRLEALPKGLHNLKSLQKLTIGK---GGL-------EE 211 (355)
Q Consensus 142 ~~~~~~l~~L~~L~l~~~~~l~~~~~~~~~~~~L~~L~l~~~~~~~~~p~~l~~~~~L~~L~l~~---~~i-------~~ 211 (355)
|..+ ++++|+.|++++|..++.+|.. ..+|+.|+++++. ++.+|..+ .+++|+.|.+.. ..+ +.
T Consensus 698 p~~i-~l~sL~~L~Lsgc~~L~~~p~~---~~nL~~L~L~~n~-i~~lP~~~-~l~~L~~L~l~~~~~~~l~~~~~~l~~ 771 (1153)
T PLN03210 698 PTGI-NLKSLYRLNLSGCSRLKSFPDI---STNISWLDLDETA-IEEFPSNL-RLENLDELILCEMKSEKLWERVQPLTP 771 (1153)
T ss_pred CCcC-CCCCCCEEeCCCCCCccccccc---cCCcCeeecCCCc-cccccccc-cccccccccccccchhhccccccccch
Confidence 7654 6778888888887766666643 2467777777743 55566443 344555554431 000 00
Q ss_pred --CCCCCCccEEEecCCcchhhhhhhhcccCCCCCccceeEecccCCcccccCcccc-------------ccCCCCCCCC
Q 018478 212 --DGLPTNLHSLDIRGNMEIWKSMIEWGQGFHRFSSLRELRIEGCDDDMVSFPPEDI-------------RMGTTLPLPT 276 (355)
Q Consensus 212 --~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~-------------~~~~~~~~~~ 276 (355)
...+++|+.|++++|.....++.. ++++++|+.|++++ |..++.+|.... ....-...++
T Consensus 772 ~~~~~~~sL~~L~Ls~n~~l~~lP~s----i~~L~~L~~L~Ls~-C~~L~~LP~~~~L~sL~~L~Ls~c~~L~~~p~~~~ 846 (1153)
T PLN03210 772 LMTMLSPSLTRLFLSDIPSLVELPSS----IQNLHKLEHLEIEN-CINLETLPTGINLESLESLDLSGCSRLRTFPDIST 846 (1153)
T ss_pred hhhhccccchheeCCCCCCccccChh----hhCCCCCCEEECCC-CCCcCeeCCCCCccccCEEECCCCCcccccccccc
Confidence 112345555666555544433331 44555555555555 555555443220 0000001234
Q ss_pred ccceEEeccCCCcccccccCCCCCCccEEeeCCCCCCcccCCCC-CCCCccEEEecCCchhhHh
Q 018478 277 SLTSLAIFSFPNLERLSSSIVDLQNLTSLYLVGCPKLKYFPEKG-LPSSLLELWIGGCPLIEEK 339 (355)
Q Consensus 277 ~L~~L~l~~~~~l~~l~~~~~~~~~L~~L~l~~~~~l~~~~~~~-~~~~L~~L~l~~c~~l~~~ 339 (355)
+|+.|++++ +.++.+|.++..+++|+.|++.+|++++.++... -+++|+.+++.+|++++..
T Consensus 847 nL~~L~Ls~-n~i~~iP~si~~l~~L~~L~L~~C~~L~~l~~~~~~L~~L~~L~l~~C~~L~~~ 909 (1153)
T PLN03210 847 NISDLNLSR-TGIEEVPWWIEKFSNLSFLDMNGCNNLQRVSLNISKLKHLETVDFSDCGALTEA 909 (1153)
T ss_pred ccCEeECCC-CCCccChHHHhcCCCCCEEECCCCCCcCccCcccccccCCCeeecCCCcccccc
Confidence 566666665 4666777778889999999999999999987642 2689999999999888643
No 2
>PLN00113 leucine-rich repeat receptor-like protein kinase; Provisional
Probab=99.88 E-value=3.1e-22 Score=206.19 Aligned_cols=105 Identities=25% Similarity=0.242 Sum_probs=49.3
Q ss_pred CcccEEEEccCcchhchhhhccCCCCCcEEEeeccCCcCcccccccCCCCCceEeccccCCCcCCCCCCCCCCCcceEEE
Q 018478 101 PSLKSLRVQGCSKLESIAETLDNSTSLETIHIFYCENMKILPSGLHNLRQLQEISIEGCGNLESFPEGGLPCAKLKEVVI 180 (355)
Q Consensus 101 ~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~l~~~~~~~~~~~~L~~L~l 180 (355)
++|+.|++++|.....+|..++++++|++|++++|.....+|..++++++|+.|++++|.....+|..+..+++|+.|++
T Consensus 164 ~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~L 243 (968)
T PLN00113 164 SSLKVLDLGGNVLVGKIPNSLTNLTSLEFLTLASNQLVGQIPRELGQMKSLKWIYLGYNNLSGEIPYEIGGLTSLNHLDL 243 (968)
T ss_pred CCCCEEECccCcccccCChhhhhCcCCCeeeccCCCCcCcCChHHcCcCCccEEECcCCccCCcCChhHhcCCCCCEEEC
Confidence 44555555554422334444444555555555554433344444445555555555544332334444444455555555
Q ss_pred ccccCcCcccccccCCCCCceEEEe
Q 018478 181 RWCGRLEALPKGLHNLKSLQKLTIG 205 (355)
Q Consensus 181 ~~~~~~~~~p~~l~~~~~L~~L~l~ 205 (355)
++|.....+|..++.+++|++|+++
T Consensus 244 ~~n~l~~~~p~~l~~l~~L~~L~L~ 268 (968)
T PLN00113 244 VYNNLTGPIPSSLGNLKNLQYLFLY 268 (968)
T ss_pred cCceeccccChhHhCCCCCCEEECc
Confidence 5443333444444455555555444
No 3
>PLN03210 Resistant to P. syringae 6; Provisional
Probab=99.88 E-value=8.8e-22 Score=204.02 Aligned_cols=287 Identities=21% Similarity=0.277 Sum_probs=188.3
Q ss_pred CCCccEEeecccccCcccccCccCCCcceEecccCccccccccccCcCCCCCCCccccccccccEEEecCCCccchhccc
Q 018478 5 NSSLEILEIWSCRSLTYLAAVQLPRSLKRLDIQCCSNIRTLTMEEGIQSSSSSSSRRYTSYLLEELCISSCRSLTSIFSK 84 (355)
Q Consensus 5 ~~~L~~L~l~~~~~l~~l~~~~~~~~L~~L~l~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~~~~~ 84 (355)
+++|++|+++++..++.+|.....++|++|++.+|..+..+|..+ ..+++|+.|++++|..++.+
T Consensus 633 l~~Lk~L~Ls~~~~l~~ip~ls~l~~Le~L~L~~c~~L~~lp~si------------~~L~~L~~L~L~~c~~L~~L--- 697 (1153)
T PLN03210 633 LTGLRNIDLRGSKNLKEIPDLSMATNLETLKLSDCSSLVELPSSI------------QYLNKLEDLDMSRCENLEIL--- 697 (1153)
T ss_pred CCCCCEEECCCCCCcCcCCccccCCcccEEEecCCCCccccchhh------------hccCCCCEEeCCCCCCcCcc---
Confidence 455555555555445555443334555555555555555554432 33556666666666655555
Q ss_pred cccchhccccccCCCCCcccEEEEccCcchhchhhhccCCCCCcEEEeeccCCcCcccccccCCCCCceEeccccCCC--
Q 018478 85 NELSATLESLEVGNLPPSLKSLRVQGCSKLESIAETLDNSTSLETIHIFYCENMKILPSGLHNLRQLQEISIEGCGNL-- 162 (355)
Q Consensus 85 n~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~l-- 162 (355)
|....+++|+.|++++|..+..+|.. ..+|++|++.++. +..+|..+ .+++|+.|.+.++...
T Consensus 698 ----------p~~i~l~sL~~L~Lsgc~~L~~~p~~---~~nL~~L~L~~n~-i~~lP~~~-~l~~L~~L~l~~~~~~~l 762 (1153)
T PLN03210 698 ----------PTGINLKSLYRLNLSGCSRLKSFPDI---STNISWLDLDETA-IEEFPSNL-RLENLDELILCEMKSEKL 762 (1153)
T ss_pred ----------CCcCCCCCCCEEeCCCCCCccccccc---cCCcCeeecCCCc-cccccccc-cccccccccccccchhhc
Confidence 54434456666666666555555432 3456666666655 45555433 3556666666543210
Q ss_pred ----cCCC-CCCCCCCCcceEEEccccCcCcccccccCCCCCceEEEe----ecCcCCCCCCCCccEEEecCCcchhhhh
Q 018478 163 ----ESFP-EGGLPCAKLKEVVIRWCGRLEALPKGLHNLKSLQKLTIG----KGGLEEDGLPTNLHSLDIRGNMEIWKSM 233 (355)
Q Consensus 163 ----~~~~-~~~~~~~~L~~L~l~~~~~~~~~p~~l~~~~~L~~L~l~----~~~i~~~~~~~~L~~L~l~~~~~~~~~~ 233 (355)
..++ ......++|+.|++++|..+..+|..++++++|+.|+++ ...+|....+++|+.|++++|..+...+
T Consensus 763 ~~~~~~l~~~~~~~~~sL~~L~Ls~n~~l~~lP~si~~L~~L~~L~Ls~C~~L~~LP~~~~L~sL~~L~Ls~c~~L~~~p 842 (1153)
T PLN03210 763 WERVQPLTPLMTMLSPSLTRLFLSDIPSLVELPSSIQNLHKLEHLEIENCINLETLPTGINLESLESLDLSGCSRLRTFP 842 (1153)
T ss_pred cccccccchhhhhccccchheeCCCCCCccccChhhhCCCCCCEEECCCCCCcCeeCCCCCccccCEEECCCCCcccccc
Confidence 0011 111224689999999988888899999999999999997 3456655567899999999998765443
Q ss_pred hhhcccCCCCCccceeEecccCCcccccCccccccCCCCCCCCccceEEeccCCCcccccccCCCCCCccEEeeCCCCCC
Q 018478 234 IEWGQGFHRFSSLRELRIEGCDDDMVSFPPEDIRMGTTLPLPTSLTSLAIFSFPNLERLSSSIVDLQNLTSLYLVGCPKL 313 (355)
Q Consensus 234 ~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~l~~~~~~~~~L~~L~l~~~~~l 313 (355)
. ..++|+.|++++ +.++.+|... ..+++|+.|++++|++++.+|..+..+++|+.+++++|.++
T Consensus 843 ~-------~~~nL~~L~Ls~--n~i~~iP~si-------~~l~~L~~L~L~~C~~L~~l~~~~~~L~~L~~L~l~~C~~L 906 (1153)
T PLN03210 843 D-------ISTNISDLNLSR--TGIEEVPWWI-------EKFSNLSFLDMNGCNNLQRVSLNISKLKHLETVDFSDCGAL 906 (1153)
T ss_pred c-------cccccCEeECCC--CCCccChHHH-------hcCCCCCEEECCCCCCcCccCcccccccCCCeeecCCCccc
Confidence 2 236899999998 6788888766 57889999999999999999988889999999999999988
Q ss_pred cccCCCCC--------------CCCccEEEecCCchhh
Q 018478 314 KYFPEKGL--------------PSSLLELWIGGCPLIE 337 (355)
Q Consensus 314 ~~~~~~~~--------------~~~L~~L~l~~c~~l~ 337 (355)
+.++.... .+....+.+.+|.++.
T Consensus 907 ~~~~l~~~~~~~~~~~~n~~~~~p~~~~l~f~nC~~L~ 944 (1153)
T PLN03210 907 TEASWNGSPSEVAMATDNIHSKLPSTVCINFINCFNLD 944 (1153)
T ss_pred ccccCCCCchhhhhhcccccccCCchhccccccccCCC
Confidence 87654221 2233445667776654
No 4
>PLN00113 leucine-rich repeat receptor-like protein kinase; Provisional
Probab=99.88 E-value=8.2e-22 Score=203.09 Aligned_cols=290 Identities=17% Similarity=0.138 Sum_probs=209.3
Q ss_pred CCCccEEeecccccCcccccCccC--CCcceEecccCcccc-ccccccCcCCCCCCCccccccccccEEEecCCCccchh
Q 018478 5 NSSLEILEIWSCRSLTYLAAVQLP--RSLKRLDIQCCSNIR-TLTMEEGIQSSSSSSSRRYTSYLLEELCISSCRSLTSI 81 (355)
Q Consensus 5 ~~~L~~L~l~~~~~l~~l~~~~~~--~~L~~L~l~~~~~l~-~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~~ 81 (355)
...++.|+++++ .++...+..+. ++|+.|+++++. +. .+|... +..+++|++|+++++.....+
T Consensus 68 ~~~v~~L~L~~~-~i~~~~~~~~~~l~~L~~L~Ls~n~-~~~~ip~~~-----------~~~l~~L~~L~Ls~n~l~~~~ 134 (968)
T PLN00113 68 SSRVVSIDLSGK-NISGKISSAIFRLPYIQTINLSNNQ-LSGPIPDDI-----------FTTSSSLRYLNLSNNNFTGSI 134 (968)
T ss_pred CCcEEEEEecCC-CccccCChHHhCCCCCCEEECCCCc-cCCcCChHH-----------hccCCCCCEEECcCCcccccc
Confidence 456888888754 34333222232 889999999854 43 566554 345889999999886433333
Q ss_pred ccccccchhccccccCCCCCcccEEEEccCcchhchhhhccCCCCCcEEEeeccCCcCcccccccCCCCCceEeccccCC
Q 018478 82 FSKNELSATLESLEVGNLPPSLKSLRVQGCSKLESIAETLDNSTSLETIHIFYCENMKILPSGLHNLRQLQEISIEGCGN 161 (355)
Q Consensus 82 ~~~n~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~ 161 (355)
+. ..+++|++|++++|.....+|..++.+++|++|++++|.....+|..++++++|+.|++++|..
T Consensus 135 -------------p~-~~l~~L~~L~Ls~n~~~~~~p~~~~~l~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~L~~n~l 200 (968)
T PLN00113 135 -------------PR-GSIPNLETLDLSNNMLSGEIPNDIGSFSSLKVLDLGGNVLVGKIPNSLTNLTSLEFLTLASNQL 200 (968)
T ss_pred -------------Cc-cccCCCCEEECcCCcccccCChHHhcCCCCCEEECccCcccccCChhhhhCcCCCeeeccCCCC
Confidence 43 3457999999999984457888899999999999999986678888999999999999999866
Q ss_pred CcCCCCCCCCCCCcceEEEccccCcCcccccccCCCCCceEEEeecCc----C-CCCCCCCccEEEecCCcchhhhhhhh
Q 018478 162 LESFPEGGLPCAKLKEVVIRWCGRLEALPKGLHNLKSLQKLTIGKGGL----E-EDGLPTNLHSLDIRGNMEIWKSMIEW 236 (355)
Q Consensus 162 l~~~~~~~~~~~~L~~L~l~~~~~~~~~p~~l~~~~~L~~L~l~~~~i----~-~~~~~~~L~~L~l~~~~~~~~~~~~~ 236 (355)
...+|..+..+++|+.|++++|.....+|..++.+++|++|+++.+.+ + ..+.+++|+.|++++|......+..
T Consensus 201 ~~~~p~~l~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~p~~- 279 (968)
T PLN00113 201 VGQIPRELGQMKSLKWIYLGYNNLSGEIPYEIGGLTSLNHLDLVYNNLTGPIPSSLGNLKNLQYLFLYQNKLSGPIPPS- 279 (968)
T ss_pred cCcCChHHcCcCCccEEECcCCccCCcCChhHhcCCCCCEEECcCceeccccChhHhCCCCCCEEECcCCeeeccCchh-
Confidence 667888888999999999999877678889999999999999984433 3 2456789999999988754433332
Q ss_pred cccCCCCCccceeEecccCCcccccCccccccCCCCCCCCccceEEeccCCCcccccccCCCCCCccEEeeCCCCCCc-c
Q 018478 237 GQGFHRFSSLRELRIEGCDDDMVSFPPEDIRMGTTLPLPTSLTSLAIFSFPNLERLSSSIVDLQNLTSLYLVGCPKLK-Y 315 (355)
Q Consensus 237 ~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~l~~~~~~~~~L~~L~l~~~~~l~-~ 315 (355)
+..+++|++|++++ |.....+|..+ ..+++|+.|+++++.....+|..+..+++|+.|++++| ++. .
T Consensus 280 ---l~~l~~L~~L~Ls~-n~l~~~~p~~~-------~~l~~L~~L~l~~n~~~~~~~~~~~~l~~L~~L~L~~n-~l~~~ 347 (968)
T PLN00113 280 ---IFSLQKLISLDLSD-NSLSGEIPELV-------IQLQNLEILHLFSNNFTGKIPVALTSLPRLQVLQLWSN-KFSGE 347 (968)
T ss_pred ---HhhccCcCEEECcC-CeeccCCChhH-------cCCCCCcEEECCCCccCCcCChhHhcCCCCCEEECcCC-CCcCc
Confidence 56788888898887 44444555544 45677888888775444456666677777777777777 343 3
Q ss_pred cCCC-CCCCCccEEEecCCc
Q 018478 316 FPEK-GLPSSLLELWIGGCP 334 (355)
Q Consensus 316 ~~~~-~~~~~L~~L~l~~c~ 334 (355)
+|.. +-.++|+.|++.+|.
T Consensus 348 ~p~~l~~~~~L~~L~Ls~n~ 367 (968)
T PLN00113 348 IPKNLGKHNNLTVLDLSTNN 367 (968)
T ss_pred CChHHhCCCCCcEEECCCCe
Confidence 3321 124666666666553
No 5
>KOG4194 consensus Membrane glycoprotein LIG-1 [Signal transduction mechanisms]
Probab=99.85 E-value=2.6e-22 Score=182.24 Aligned_cols=216 Identities=19% Similarity=0.256 Sum_probs=137.9
Q ss_pred cccEEEEccCcchhchh-hhccCCCCCcEEEeeccCCcCcc-cccccCCCCCceEeccccCCCcCCCC-CCCCCCCcceE
Q 018478 102 SLKSLRVQGCSKLESIA-ETLDNSTSLETIHIFYCENMKIL-PSGLHNLRQLQEISIEGCGNLESFPE-GGLPCAKLKEV 178 (355)
Q Consensus 102 ~L~~L~l~~~~~~~~~~-~~~~~l~~L~~L~l~~~~~~~~~-~~~~~~l~~L~~L~l~~~~~l~~~~~-~~~~~~~L~~L 178 (355)
+|..|.++.|. ++.+| ..|.++++|+.|++..|. +... --+|..+++|+.|.+..| .+..+.+ .|..|.++++|
T Consensus 198 sL~tlkLsrNr-ittLp~r~Fk~L~~L~~LdLnrN~-irive~ltFqgL~Sl~nlklqrN-~I~kL~DG~Fy~l~kme~l 274 (873)
T KOG4194|consen 198 SLLTLKLSRNR-ITTLPQRSFKRLPKLESLDLNRNR-IRIVEGLTFQGLPSLQNLKLQRN-DISKLDDGAFYGLEKMEHL 274 (873)
T ss_pred hheeeecccCc-ccccCHHHhhhcchhhhhhccccc-eeeehhhhhcCchhhhhhhhhhc-CcccccCcceeeeccccee
Confidence 56666666665 55554 445557777777777665 4433 235666777777777665 4555554 34557788888
Q ss_pred EEccccCcCcccccccCCCCCceEEEeecCcCC-----CCCCCCccEEEecCCcchhhhhhhhcccCCCCCccceeEecc
Q 018478 179 VIRWCGRLEALPKGLHNLKSLQKLTIGKGGLEE-----DGLPTNLHSLDIRGNMEIWKSMIEWGQGFHRFSSLRELRIEG 253 (355)
Q Consensus 179 ~l~~~~~~~~~p~~l~~~~~L~~L~l~~~~i~~-----~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~l~~L~~L~l~~ 253 (355)
++..|.....-...+.++++|+.|+++.+.|.. ..+.++|+.|+++.|.... ..+. . +..+..|++|+++.
T Consensus 275 ~L~~N~l~~vn~g~lfgLt~L~~L~lS~NaI~rih~d~WsftqkL~~LdLs~N~i~~-l~~~-s--f~~L~~Le~LnLs~ 350 (873)
T KOG4194|consen 275 NLETNRLQAVNEGWLFGLTSLEQLDLSYNAIQRIHIDSWSFTQKLKELDLSSNRITR-LDEG-S--FRVLSQLEELNLSH 350 (873)
T ss_pred ecccchhhhhhcccccccchhhhhccchhhhheeecchhhhcccceeEecccccccc-CChh-H--HHHHHHhhhhcccc
Confidence 888755433333466788888888888444432 3467888888888876433 3322 1 56677777777777
Q ss_pred cCCcccccCccccccCCCCCCCCccceEEeccCCCcc----cccccCCCCCCccEEeeCCCCCCcccCCCCC--CCCccE
Q 018478 254 CDDDMVSFPPEDIRMGTTLPLPTSLTSLAIFSFPNLE----RLSSSIVDLQNLTSLYLVGCPKLKYFPEKGL--PSSLLE 327 (355)
Q Consensus 254 ~~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~l~----~l~~~~~~~~~L~~L~l~~~~~l~~~~~~~~--~~~L~~ 327 (355)
+++..+.+..+ ....+|+.|++++ +.+. .-...+.++++|+.|.+.+| ++++|+...+ ++.|++
T Consensus 351 --Nsi~~l~e~af------~~lssL~~LdLr~-N~ls~~IEDaa~~f~gl~~LrkL~l~gN-qlk~I~krAfsgl~~LE~ 420 (873)
T KOG4194|consen 351 --NSIDHLAEGAF------VGLSSLHKLDLRS-NELSWCIEDAAVAFNGLPSLRKLRLTGN-QLKSIPKRAFSGLEALEH 420 (873)
T ss_pred --cchHHHHhhHH------HHhhhhhhhcCcC-CeEEEEEecchhhhccchhhhheeecCc-eeeecchhhhccCcccce
Confidence 66666665443 4566777777776 3332 22233566777777777777 7777776654 677777
Q ss_pred EEecCCc
Q 018478 328 LWIGGCP 334 (355)
Q Consensus 328 L~l~~c~ 334 (355)
|++.+++
T Consensus 421 LdL~~Na 427 (873)
T KOG4194|consen 421 LDLGDNA 427 (873)
T ss_pred ecCCCCc
Confidence 7777665
No 6
>KOG4194 consensus Membrane glycoprotein LIG-1 [Signal transduction mechanisms]
Probab=99.81 E-value=3.8e-21 Score=174.67 Aligned_cols=278 Identities=17% Similarity=0.244 Sum_probs=171.7
Q ss_pred cEEeecccccCcccccCccC--CCcceEecccCccccccccccCcCCCCCCCccccccccccEEEecCCCccchhccccc
Q 018478 9 EILEIWSCRSLTYLAAVQLP--RSLKRLDIQCCSNIRTLTMEEGIQSSSSSSSRRYTSYLLEELCISSCRSLTSIFSKNE 86 (355)
Q Consensus 9 ~~L~l~~~~~l~~l~~~~~~--~~L~~L~l~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~~~~~n~ 86 (355)
+.|++++ +++.++....|. |+|+++.+.+ +.++.+|...+. ..+|+.|++.+. .+..+
T Consensus 81 ~~Ldlsn-Nkl~~id~~~f~nl~nLq~v~l~~-N~Lt~IP~f~~~------------sghl~~L~L~~N-~I~sv----- 140 (873)
T KOG4194|consen 81 QTLDLSN-NKLSHIDFEFFYNLPNLQEVNLNK-NELTRIPRFGHE------------SGHLEKLDLRHN-LISSV----- 140 (873)
T ss_pred eeeeccc-cccccCcHHHHhcCCcceeeeecc-chhhhccccccc------------ccceeEEeeecc-ccccc-----
Confidence 3455553 345444433332 5555555555 445555544321 334555555542 22222
Q ss_pred cchhccccccC--CCCCcccEEEEccCcchhchh-hhccCCCCCcEEEeeccCCcCcc-cccccCCCCCceEeccccCCC
Q 018478 87 LSATLESLEVG--NLPPSLKSLRVQGCSKLESIA-ETLDNSTSLETIHIFYCENMKIL-PSGLHNLRQLQEISIEGCGNL 162 (355)
Q Consensus 87 ~~~~~~~~~~~--~~~~~L~~L~l~~~~~~~~~~-~~~~~l~~L~~L~l~~~~~~~~~-~~~~~~l~~L~~L~l~~~~~l 162 (355)
... ..++.|+.||++.|. +..+| +.+..-.++++|++++|. ++.+ ...|..+.+|..|.++.| .+
T Consensus 141 --------~se~L~~l~alrslDLSrN~-is~i~~~sfp~~~ni~~L~La~N~-It~l~~~~F~~lnsL~tlkLsrN-ri 209 (873)
T KOG4194|consen 141 --------TSEELSALPALRSLDLSRNL-ISEIPKPSFPAKVNIKKLNLASNR-ITTLETGHFDSLNSLLTLKLSRN-RI 209 (873)
T ss_pred --------cHHHHHhHhhhhhhhhhhch-hhcccCCCCCCCCCceEEeecccc-ccccccccccccchheeeecccC-cc
Confidence 111 344677777777766 65555 344445678888888877 4443 345666778888888876 66
Q ss_pred cCCCCCCCC-CCCcceEEEccccCcCcc-cccccCCCCCceEEEeecCcC---CCC--CCCCccEEEecCCcchhhhhhh
Q 018478 163 ESFPEGGLP-CAKLKEVVIRWCGRLEAL-PKGLHNLKSLQKLTIGKGGLE---EDG--LPTNLHSLDIRGNMEIWKSMIE 235 (355)
Q Consensus 163 ~~~~~~~~~-~~~L~~L~l~~~~~~~~~-p~~l~~~~~L~~L~l~~~~i~---~~~--~~~~L~~L~l~~~~~~~~~~~~ 235 (355)
+.+|...++ +++|+.|++..| .++.+ ...|.++++|+.|.+..+.|. +.. .+.++++|++..|+.. ....-
T Consensus 210 ttLp~r~Fk~L~~L~~LdLnrN-~irive~ltFqgL~Sl~nlklqrN~I~kL~DG~Fy~l~kme~l~L~~N~l~-~vn~g 287 (873)
T KOG4194|consen 210 TTLPQRSFKRLPKLESLDLNRN-RIRIVEGLTFQGLPSLQNLKLQRNDISKLDDGAFYGLEKMEHLNLETNRLQ-AVNEG 287 (873)
T ss_pred cccCHHHhhhcchhhhhhcccc-ceeeehhhhhcCchhhhhhhhhhcCcccccCcceeeecccceeecccchhh-hhhcc
Confidence 777754444 788888888774 45444 246778888888877744443 322 4578888888887633 33333
Q ss_pred hcccCCCCCccceeEecccCCcccccCc-cccccCCCCCCCCccceEEeccCCCcccccc-cCCCCCCccEEeeCCCCCC
Q 018478 236 WGQGFHRFSSLRELRIEGCDDDMVSFPP-EDIRMGTTLPLPTSLTSLAIFSFPNLERLSS-SIVDLQNLTSLYLVGCPKL 313 (355)
Q Consensus 236 ~~~~~~~l~~L~~L~l~~~~~~~~~~~~-~~~~~~~~~~~~~~L~~L~l~~~~~l~~l~~-~~~~~~~L~~L~l~~~~~l 313 (355)
| +-++++|++|++++ +.+..+.. .+ .+.++|+.|++++ +.++.+++ .+..+.+|++|.++.| ++
T Consensus 288 ~---lfgLt~L~~L~lS~--NaI~rih~d~W-------sftqkL~~LdLs~-N~i~~l~~~sf~~L~~Le~LnLs~N-si 353 (873)
T KOG4194|consen 288 W---LFGLTSLEQLDLSY--NAIQRIHIDSW-------SFTQKLKELDLSS-NRITRLDEGSFRVLSQLEELNLSHN-SI 353 (873)
T ss_pred c---ccccchhhhhccch--hhhheeecchh-------hhcccceeEeccc-cccccCChhHHHHHHHhhhhccccc-ch
Confidence 4 66788888888887 66666643 33 4667888888887 67777765 3466777777777776 67
Q ss_pred cccCCCCC--CCCccEEEecCC
Q 018478 314 KYFPEKGL--PSSLLELWIGGC 333 (355)
Q Consensus 314 ~~~~~~~~--~~~L~~L~l~~c 333 (355)
+++.+..+ +.+|++||++++
T Consensus 354 ~~l~e~af~~lssL~~LdLr~N 375 (873)
T KOG4194|consen 354 DHLAEGAFVGLSSLHKLDLRSN 375 (873)
T ss_pred HHHHhhHHHHhhhhhhhcCcCC
Confidence 77666544 567777776654
No 7
>KOG0444 consensus Cytoskeletal regulator Flightless-I (contains leucine-rich and gelsolin repeats) [Cytoskeleton]
Probab=99.75 E-value=2.3e-20 Score=171.08 Aligned_cols=281 Identities=17% Similarity=0.178 Sum_probs=196.3
Q ss_pred CCcceEecccCccccccccccCcCCCCCCCccccccccccEEEecCCCccchhccccccchhccccccC--CCCCcccEE
Q 018478 29 RSLKRLDIQCCSNIRTLTMEEGIQSSSSSSSRRYTSYLLEELCISSCRSLTSIFSKNELSATLESLEVG--NLPPSLKSL 106 (355)
Q Consensus 29 ~~L~~L~l~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~~~~~n~~~~~~~~~~~~--~~~~~L~~L 106 (355)
..|+.|+++. ++++++|... ...+++-.|++++. +++.+ |.. ..+..|-.|
T Consensus 103 ~dLt~lDLSh-NqL~EvP~~L------------E~AKn~iVLNLS~N-~IetI-------------Pn~lfinLtDLLfL 155 (1255)
T KOG0444|consen 103 KDLTILDLSH-NQLREVPTNL------------EYAKNSIVLNLSYN-NIETI-------------PNSLFINLTDLLFL 155 (1255)
T ss_pred ccceeeecch-hhhhhcchhh------------hhhcCcEEEEcccC-ccccC-------------CchHHHhhHhHhhh
Confidence 5566666666 5566666543 22555666666652 44444 322 233567778
Q ss_pred EEccCcchhchhhhccCCCCCcEEEeeccCCcCcc-cccccCCCCCceEeccccC-CCcCCCCCCCCCCCcceEEEcccc
Q 018478 107 RVQGCSKLESIAETLDNSTSLETIHIFYCENMKIL-PSGLHNLRQLQEISIEGCG-NLESFPEGGLPCAKLKEVVIRWCG 184 (355)
Q Consensus 107 ~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~-~~~~~~l~~L~~L~l~~~~-~l~~~~~~~~~~~~L~~L~l~~~~ 184 (355)
|+++|. +..+|+-+.++.+|++|.+++|+ +... -..+..+++|+.|.+++.+ .+..+|..+-.+.||..++++. +
T Consensus 156 DLS~Nr-Le~LPPQ~RRL~~LqtL~Ls~NP-L~hfQLrQLPsmtsL~vLhms~TqRTl~N~Ptsld~l~NL~dvDlS~-N 232 (1255)
T KOG0444|consen 156 DLSNNR-LEMLPPQIRRLSMLQTLKLSNNP-LNHFQLRQLPSMTSLSVLHMSNTQRTLDNIPTSLDDLHNLRDVDLSE-N 232 (1255)
T ss_pred ccccch-hhhcCHHHHHHhhhhhhhcCCCh-hhHHHHhcCccchhhhhhhcccccchhhcCCCchhhhhhhhhccccc-c
Confidence 888877 77888878888888888888887 4322 1223346667777776642 2445677777788888888887 4
Q ss_pred CcCcccccccCCCCCceEEEeecCcCCCC----CCCCccEEEecCCcchhhhhhhhcccCCCCCccceeEecccCCcccc
Q 018478 185 RLEALPKGLHNLKSLQKLTIGKGGLEEDG----LPTNLHSLDIRGNMEIWKSMIEWGQGFHRFSSLRELRIEGCDDDMVS 260 (355)
Q Consensus 185 ~~~~~p~~l~~~~~L~~L~l~~~~i~~~~----~~~~L~~L~l~~~~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~ 260 (355)
.+..+|+.+-.+++|+.|+++.+.++... .-.+|++|+++.|. ++..+.. +..+++|+.|.+.++-...+-
T Consensus 233 ~Lp~vPecly~l~~LrrLNLS~N~iteL~~~~~~W~~lEtLNlSrNQ-Lt~LP~a----vcKL~kL~kLy~n~NkL~FeG 307 (1255)
T KOG0444|consen 233 NLPIVPECLYKLRNLRRLNLSGNKITELNMTEGEWENLETLNLSRNQ-LTVLPDA----VCKLTKLTKLYANNNKLTFEG 307 (1255)
T ss_pred CCCcchHHHhhhhhhheeccCcCceeeeeccHHHHhhhhhhccccch-hccchHH----HhhhHHHHHHHhccCcccccC
Confidence 67778888888888888888877666543 34688888888876 3334432 567888999988873345677
Q ss_pred cCccccccCCCCCCCCccceEEeccCCCcccccccCCCCCCccEEeeCCCCCCcccCCCC-CCCCccEEEecCCchhhHh
Q 018478 261 FPPEDIRMGTTLPLPTSLTSLAIFSFPNLERLSSSIVDLQNLTSLYLVGCPKLKYFPEKG-LPSSLLELWIGGCPLIEEK 339 (355)
Q Consensus 261 ~~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~l~~~~~~~~~L~~L~l~~~~~l~~~~~~~-~~~~L~~L~l~~c~~l~~~ 339 (355)
+|..+ ..+..|+.+...+ +.++-+|+.++.|+.|+.|.+..| ++-.+|... +++-|+.||++.+|++.-.
T Consensus 308 iPSGI-------GKL~~Levf~aan-N~LElVPEglcRC~kL~kL~L~~N-rLiTLPeaIHlL~~l~vLDlreNpnLVMP 378 (1255)
T KOG0444|consen 308 IPSGI-------GKLIQLEVFHAAN-NKLELVPEGLCRCVKLQKLKLDHN-RLITLPEAIHLLPDLKVLDLRENPNLVMP 378 (1255)
T ss_pred Cccch-------hhhhhhHHHHhhc-cccccCchhhhhhHHHHHhccccc-ceeechhhhhhcCCcceeeccCCcCccCC
Confidence 88777 4667888888887 899999999999999999999887 777888754 4899999999999987653
Q ss_pred hhcc---CCcccccccc
Q 018478 340 CRKD---GGQYFYSLFY 353 (355)
Q Consensus 340 ~~~~---~~~~~~~i~~ 353 (355)
-... ...+|+.|-+
T Consensus 379 PKP~da~~~lefYNIDF 395 (1255)
T KOG0444|consen 379 PKPNDARKKLEFYNIDF 395 (1255)
T ss_pred CCcchhhhcceeeecce
Confidence 2221 2345665543
No 8
>PRK15387 E3 ubiquitin-protein ligase SspH2; Provisional
Probab=99.69 E-value=6.1e-16 Score=150.98 Aligned_cols=129 Identities=28% Similarity=0.324 Sum_probs=71.8
Q ss_pred ccEEeecccccCcccccCccCCCcceEecccCccccccccccCcCCCCCCCccccccccccEEEecCCCccchhcccccc
Q 018478 8 LEILEIWSCRSLTYLAAVQLPRSLKRLDIQCCSNIRTLTMEEGIQSSSSSSSRRYTSYLLEELCISSCRSLTSIFSKNEL 87 (355)
Q Consensus 8 L~~L~l~~~~~l~~l~~~~~~~~L~~L~l~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~~~~~n~~ 87 (355)
-..|+++++ .++.+|. .++++|+.|.+.+ ++++.+|.. .++|++|+++++ .++.+
T Consensus 203 ~~~LdLs~~-~LtsLP~-~l~~~L~~L~L~~-N~Lt~LP~l---------------p~~Lk~LdLs~N-~LtsL------ 257 (788)
T PRK15387 203 NAVLNVGES-GLTTLPD-CLPAHITTLVIPD-NNLTSLPAL---------------PPELRTLEVSGN-QLTSL------ 257 (788)
T ss_pred CcEEEcCCC-CCCcCCc-chhcCCCEEEccC-CcCCCCCCC---------------CCCCcEEEecCC-ccCcc------
Confidence 456777654 6666664 4456778888777 557766642 566777777764 55555
Q ss_pred chhccccccCCCCCcccEEEEccCcchhchhhhccCCCCCcEEEeeccCCcCcccccccCCCCCceEeccccCCCcCCCC
Q 018478 88 SATLESLEVGNLPPSLKSLRVQGCSKLESIAETLDNSTSLETIHIFYCENMKILPSGLHNLRQLQEISIEGCGNLESFPE 167 (355)
Q Consensus 88 ~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~l~~~~~ 167 (355)
|. .+++|+.|++++|. +..+|.. ..+|+.|++++|. ++.+|.. +++|+.|++++| .+..+|.
T Consensus 258 -------P~--lp~sL~~L~Ls~N~-L~~Lp~l---p~~L~~L~Ls~N~-Lt~LP~~---p~~L~~LdLS~N-~L~~Lp~ 319 (788)
T PRK15387 258 -------PV--LPPGLLELSIFSNP-LTHLPAL---PSGLCKLWIFGNQ-LTSLPVL---PPGLQELSVSDN-QLASLPA 319 (788)
T ss_pred -------cC--cccccceeeccCCc-hhhhhhc---hhhcCEEECcCCc-ccccccc---ccccceeECCCC-ccccCCC
Confidence 42 33566666666665 5555542 2455556665554 4444432 345666666554 4444443
Q ss_pred CCCCCCCcceEEEcc
Q 018478 168 GGLPCAKLKEVVIRW 182 (355)
Q Consensus 168 ~~~~~~~L~~L~l~~ 182 (355)
.. .+|+.|++++
T Consensus 320 lp---~~L~~L~Ls~ 331 (788)
T PRK15387 320 LP---SELCKLWAYN 331 (788)
T ss_pred Cc---cccccccccc
Confidence 11 2344444444
No 9
>PRK15370 E3 ubiquitin-protein ligase SlrP; Provisional
Probab=99.66 E-value=3.3e-16 Score=153.51 Aligned_cols=243 Identities=21% Similarity=0.310 Sum_probs=178.4
Q ss_pred CCccEEeecccccCcccccCccCCCcceEecccCccccccccccCcCCCCCCCccccccccccEEEecCCCccchhcccc
Q 018478 6 SSLEILEIWSCRSLTYLAAVQLPRSLKRLDIQCCSNIRTLTMEEGIQSSSSSSSRRYTSYLLEELCISSCRSLTSIFSKN 85 (355)
Q Consensus 6 ~~L~~L~l~~~~~l~~l~~~~~~~~L~~L~l~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~~~~~n 85 (355)
.+.+.|.+.+. +++.+| ..++++|+.|++++ +.++.+|... .++|+.|+++++ .++.+
T Consensus 178 ~~~~~L~L~~~-~LtsLP-~~Ip~~L~~L~Ls~-N~LtsLP~~l--------------~~nL~~L~Ls~N-~LtsL---- 235 (754)
T PRK15370 178 NNKTELRLKIL-GLTTIP-ACIPEQITTLILDN-NELKSLPENL--------------QGNIKTLYANSN-QLTSI---- 235 (754)
T ss_pred cCceEEEeCCC-CcCcCC-cccccCCcEEEecC-CCCCcCChhh--------------ccCCCEEECCCC-ccccC----
Confidence 35788889864 677777 34678999999998 5788888766 568999999875 56666
Q ss_pred ccchhccccccCCCCCcccEEEEccCcchhchhhhccCCCCCcEEEeeccCCcCcccccccCCCCCceEeccccCCCcCC
Q 018478 86 ELSATLESLEVGNLPPSLKSLRVQGCSKLESIAETLDNSTSLETIHIFYCENMKILPSGLHNLRQLQEISIEGCGNLESF 165 (355)
Q Consensus 86 ~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~l~~~ 165 (355)
|. ..+++|+.|++++|. +..+|..+. .+|+.|++++|. +..+|..+. ++|+.|++++| .++.+
T Consensus 236 ---------P~-~l~~~L~~L~Ls~N~-L~~LP~~l~--s~L~~L~Ls~N~-L~~LP~~l~--~sL~~L~Ls~N-~Lt~L 298 (754)
T PRK15370 236 ---------PA-TLPDTIQEMELSINR-ITELPERLP--SALQSLDLFHNK-ISCLPENLP--EELRYLSVYDN-SIRTL 298 (754)
T ss_pred ---------Ch-hhhccccEEECcCCc-cCcCChhHh--CCCCEEECcCCc-cCccccccC--CCCcEEECCCC-ccccC
Confidence 54 344689999999988 778887663 589999999876 777887653 58999999987 67778
Q ss_pred CCCCCCCCCcceEEEccccCcCcccccccCCCCCceEEEeecCcCCC--CCCCCccEEEecCCcchhhhhhhhcccCCCC
Q 018478 166 PEGGLPCAKLKEVVIRWCGRLEALPKGLHNLKSLQKLTIGKGGLEED--GLPTNLHSLDIRGNMEIWKSMIEWGQGFHRF 243 (355)
Q Consensus 166 ~~~~~~~~~L~~L~l~~~~~~~~~p~~l~~~~~L~~L~l~~~~i~~~--~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~l 243 (355)
|..+. ++|+.|++++| .++.+|..+. ++|+.|+++.+.+... ..+++|+.|++++|.. +.++..+ .
T Consensus 299 P~~lp--~sL~~L~Ls~N-~Lt~LP~~l~--~sL~~L~Ls~N~Lt~LP~~l~~sL~~L~Ls~N~L-~~LP~~l------p 366 (754)
T PRK15370 299 PAHLP--SGITHLNVQSN-SLTALPETLP--PGLKTLEAGENALTSLPASLPPELQVLDVSKNQI-TVLPETL------P 366 (754)
T ss_pred cccch--hhHHHHHhcCC-ccccCCcccc--ccceeccccCCccccCChhhcCcccEEECCCCCC-CcCChhh------c
Confidence 76554 37899999985 4566665443 5888888884443322 3457899999998863 3344322 2
Q ss_pred CccceeEecccCCcccccCccccccCCCCCCCCccceEEeccCCCcccccccC----CCCCCccEEeeCCCC
Q 018478 244 SSLRELRIEGCDDDMVSFPPEDIRMGTTLPLPTSLTSLAIFSFPNLERLSSSI----VDLQNLTSLYLVGCP 311 (355)
Q Consensus 244 ~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~l~~~~----~~~~~L~~L~l~~~~ 311 (355)
++|++|++++ +.+..+|... +.+|+.|++++ +.+..+|..+ ..++++..|++.+|+
T Consensus 367 ~~L~~LdLs~--N~Lt~LP~~l---------~~sL~~LdLs~-N~L~~LP~sl~~~~~~~~~l~~L~L~~Np 426 (754)
T PRK15370 367 PTITTLDVSR--NALTNLPENL---------PAALQIMQASR-NNLVRLPESLPHFRGEGPQPTRIIVEYNP 426 (754)
T ss_pred CCcCEEECCC--CcCCCCCHhH---------HHHHHHHhhcc-CCcccCchhHHHHhhcCCCccEEEeeCCC
Confidence 6889999998 5677787644 35788899998 6778777654 335778888888874
No 10
>PRK15387 E3 ubiquitin-protein ligase SspH2; Provisional
Probab=99.64 E-value=1.8e-15 Score=147.74 Aligned_cols=236 Identities=29% Similarity=0.365 Sum_probs=177.6
Q ss_pred CCccEEeecccccCcccccCccCCCcceEecccCccccccccccCcCCCCCCCccccccccccEEEecCCCccchhcccc
Q 018478 6 SSLEILEIWSCRSLTYLAAVQLPRSLKRLDIQCCSNIRTLTMEEGIQSSSSSSSRRYTSYLLEELCISSCRSLTSIFSKN 85 (355)
Q Consensus 6 ~~L~~L~l~~~~~l~~l~~~~~~~~L~~L~l~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~~~~~n 85 (355)
++|+.|.+.+ ++++.+|. .+++|++|++++ ++++.+|.. .++|+.|++.++ .++.+
T Consensus 222 ~~L~~L~L~~-N~Lt~LP~--lp~~Lk~LdLs~-N~LtsLP~l---------------p~sL~~L~Ls~N-~L~~L---- 277 (788)
T PRK15387 222 AHITTLVIPD-NNLTSLPA--LPPELRTLEVSG-NQLTSLPVL---------------PPGLLELSIFSN-PLTHL---- 277 (788)
T ss_pred cCCCEEEccC-CcCCCCCC--CCCCCcEEEecC-CccCcccCc---------------ccccceeeccCC-chhhh----
Confidence 3689999986 57888774 469999999999 678888753 568999999875 45665
Q ss_pred ccchhccccccCCCCCcccEEEEccCcchhchhhhccCCCCCcEEEeeccCCcCcccccccCCCCCceEeccccCCCcCC
Q 018478 86 ELSATLESLEVGNLPPSLKSLRVQGCSKLESIAETLDNSTSLETIHIFYCENMKILPSGLHNLRQLQEISIEGCGNLESF 165 (355)
Q Consensus 86 ~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~l~~~ 165 (355)
+. .+.+|+.|++++|. ++.+|.. +++|+.|++++|. +..+|.. ..+|+.|++++| .+..+
T Consensus 278 ---------p~--lp~~L~~L~Ls~N~-Lt~LP~~---p~~L~~LdLS~N~-L~~Lp~l---p~~L~~L~Ls~N-~L~~L 337 (788)
T PRK15387 278 ---------PA--LPSGLCKLWIFGNQ-LTSLPVL---PPGLQELSVSDNQ-LASLPAL---PSELCKLWAYNN-QLTSL 337 (788)
T ss_pred ---------hh--chhhcCEEECcCCc-ccccccc---ccccceeECCCCc-cccCCCC---cccccccccccC-ccccc
Confidence 43 45789999999987 7777753 5789999999986 6667653 346888889886 67777
Q ss_pred CCCCCCCCCcceEEEccccCcCcccccccCCCCCceEEEeecCcCCC-CCCCCccEEEecCCcchhhhhhhhcccCCCCC
Q 018478 166 PEGGLPCAKLKEVVIRWCGRLEALPKGLHNLKSLQKLTIGKGGLEED-GLPTNLHSLDIRGNMEIWKSMIEWGQGFHRFS 244 (355)
Q Consensus 166 ~~~~~~~~~L~~L~l~~~~~~~~~p~~l~~~~~L~~L~l~~~~i~~~-~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~l~ 244 (355)
|.. ..+|+.|++++| .++.+|.. ..+|+.|+++.+.+... ..+.+|+.|++++|.. +.++. ..+
T Consensus 338 P~l---p~~Lq~LdLS~N-~Ls~LP~l---p~~L~~L~Ls~N~L~~LP~l~~~L~~LdLs~N~L-t~LP~-------l~s 402 (788)
T PRK15387 338 PTL---PSGLQELSVSDN-QLASLPTL---PSELYKLWAYNNRLTSLPALPSGLKELIVSGNRL-TSLPV-------LPS 402 (788)
T ss_pred ccc---ccccceEecCCC-ccCCCCCC---CcccceehhhccccccCcccccccceEEecCCcc-cCCCC-------ccc
Confidence 752 248999999985 56677753 34677787774433322 1346899999999863 33332 136
Q ss_pred ccceeEecccCCcccccCccccccCCCCCCCCccceEEeccCCCcccccccCCCCCCccEEeeCCCCCCc
Q 018478 245 SLRELRIEGCDDDMVSFPPEDIRMGTTLPLPTSLTSLAIFSFPNLERLSSSIVDLQNLTSLYLVGCPKLK 314 (355)
Q Consensus 245 ~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~l~~~~~~~~~L~~L~l~~~~~l~ 314 (355)
+|+.|++++ +.+..+|. .+.+|+.|++++ +.++.+|..+..+++|+.|++++| .++
T Consensus 403 ~L~~LdLS~--N~LssIP~----------l~~~L~~L~Ls~-NqLt~LP~sl~~L~~L~~LdLs~N-~Ls 458 (788)
T PRK15387 403 ELKELMVSG--NRLTSLPM----------LPSGLLSLSVYR-NQLTRLPESLIHLSSETTVNLEGN-PLS 458 (788)
T ss_pred CCCEEEccC--CcCCCCCc----------chhhhhhhhhcc-CcccccChHHhhccCCCeEECCCC-CCC
Confidence 899999998 67777874 346789999998 789999998999999999999998 454
No 11
>KOG0444 consensus Cytoskeletal regulator Flightless-I (contains leucine-rich and gelsolin repeats) [Cytoskeleton]
Probab=99.62 E-value=9.1e-18 Score=154.21 Aligned_cols=266 Identities=19% Similarity=0.205 Sum_probs=142.7
Q ss_pred CCCCccEEeecccccCcccccCc-cCCCcceEecccCccccccccccCcCCCCCCCccccccccccEEEecCCCccchhc
Q 018478 4 TNSSLEILEIWSCRSLTYLAAVQ-LPRSLKRLDIQCCSNIRTLTMEEGIQSSSSSSSRRYTSYLLEELCISSCRSLTSIF 82 (355)
Q Consensus 4 ~~~~L~~L~l~~~~~l~~l~~~~-~~~~L~~L~l~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~~~ 82 (355)
.+..|+.|+++. +.+++.|... .++++-+|++++ ++++.+|... |.++..|-+|++++. .++.+
T Consensus 101 ~l~dLt~lDLSh-NqL~EvP~~LE~AKn~iVLNLS~-N~IetIPn~l-----------finLtDLLfLDLS~N-rLe~L- 165 (1255)
T KOG0444|consen 101 RLKDLTILDLSH-NQLREVPTNLEYAKNSIVLNLSY-NNIETIPNSL-----------FINLTDLLFLDLSNN-RLEML- 165 (1255)
T ss_pred ccccceeeecch-hhhhhcchhhhhhcCcEEEEccc-CccccCCchH-----------HHhhHhHhhhccccc-hhhhc-
Confidence 456677788874 5677666433 238888999998 7799999876 566777778888763 44444
Q ss_pred cccccchhccccccC-CCCCcccEEEEccCcchhchh-hhccCCCCCcEEEeeccCCc-CcccccccCCCCCceEecccc
Q 018478 83 SKNELSATLESLEVG-NLPPSLKSLRVQGCSKLESIA-ETLDNSTSLETIHIFYCENM-KILPSGLHNLRQLQEISIEGC 159 (355)
Q Consensus 83 ~~n~~~~~~~~~~~~-~~~~~L~~L~l~~~~~~~~~~-~~~~~l~~L~~L~l~~~~~~-~~~~~~~~~l~~L~~L~l~~~ 159 (355)
|.. ..+..|+.|++++|+ +..+- .-+..+++|+.|.+++..+. ..+|.++..+.+|..++++.|
T Consensus 166 ------------PPQ~RRL~~LqtL~Ls~NP-L~hfQLrQLPsmtsL~vLhms~TqRTl~N~Ptsld~l~NL~dvDlS~N 232 (1255)
T KOG0444|consen 166 ------------PPQIRRLSMLQTLKLSNNP-LNHFQLRQLPSMTSLSVLHMSNTQRTLDNIPTSLDDLHNLRDVDLSEN 232 (1255)
T ss_pred ------------CHHHHHHhhhhhhhcCCCh-hhHHHHhcCccchhhhhhhcccccchhhcCCCchhhhhhhhhcccccc
Confidence 322 344566777777665 33210 11222444555555443322 224555555555555555553
Q ss_pred CCCcCCCCCCCCCCCcceEEEccccCcCcccccccCCCCCceEEEeecCcCC----CCCCCCccEEEecCCcchhh-hhh
Q 018478 160 GNLESFPEGGLPCAKLKEVVIRWCGRLEALPKGLHNLKSLQKLTIGKGGLEE----DGLPTNLHSLDIRGNMEIWK-SMI 234 (355)
Q Consensus 160 ~~l~~~~~~~~~~~~L~~L~l~~~~~~~~~p~~l~~~~~L~~L~l~~~~i~~----~~~~~~L~~L~l~~~~~~~~-~~~ 234 (355)
++..+|+....+++|+.|.+++| .++.+.-..+...+|++|+++.+.++. .+-++.|+.|.+.+|...-+ +++
T Consensus 233 -~Lp~vPecly~l~~LrrLNLS~N-~iteL~~~~~~W~~lEtLNlSrNQLt~LP~avcKL~kL~kLy~n~NkL~FeGiPS 310 (1255)
T KOG0444|consen 233 -NLPIVPECLYKLRNLRRLNLSGN-KITELNMTEGEWENLETLNLSRNQLTVLPDAVCKLTKLTKLYANNNKLTFEGIPS 310 (1255)
T ss_pred -CCCcchHHHhhhhhhheeccCcC-ceeeeeccHHHHhhhhhhccccchhccchHHHhhhHHHHHHHhccCcccccCCcc
Confidence 45555555555555555555553 344443344444555555555222221 22334555554444432211 221
Q ss_pred hhcccCCCCCccceeEecccCCcccccCccccccCCCCCCCCccceEEeccCCCcccccccCCCCCCccEEeeCCCCCC
Q 018478 235 EWGQGFHRFSSLRELRIEGCDDDMVSFPPEDIRMGTTLPLPTSLTSLAIFSFPNLERLSSSIVDLQNLTSLYLVGCPKL 313 (355)
Q Consensus 235 ~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~l~~~~~~~~~L~~L~l~~~~~l 313 (355)
+ ++.+.+|+.+..++ +.++-+|+.+ .....|+.|.+++ +.+..+|+.+.-++.|..|++..|+++
T Consensus 311 --G--IGKL~~Levf~aan--N~LElVPEgl-------cRC~kL~kL~L~~-NrLiTLPeaIHlL~~l~vLDlreNpnL 375 (1255)
T KOG0444|consen 311 --G--IGKLIQLEVFHAAN--NKLELVPEGL-------CRCVKLQKLKLDH-NRLITLPEAIHLLPDLKVLDLRENPNL 375 (1255)
T ss_pred --c--hhhhhhhHHHHhhc--cccccCchhh-------hhhHHHHHhcccc-cceeechhhhhhcCCcceeeccCCcCc
Confidence 1 44555555555554 4455555544 3444555555554 455555555555555555555555544
No 12
>KOG0618 consensus Serine/threonine phosphatase 2C containing leucine-rich repeats, similar to SCN circadian oscillatory protein (SCOP) [Signal transduction mechanisms]
Probab=99.61 E-value=3.2e-17 Score=156.51 Aligned_cols=218 Identities=21% Similarity=0.237 Sum_probs=143.6
Q ss_pred CCCCcccEEEEccCcchhchhhhccCCCCCcEEEeeccCCcCcccccccCCCCCceEeccccCCCcCCCCCCCCCCCcce
Q 018478 98 NLPPSLKSLRVQGCSKLESIAETLDNSTSLETIHIFYCENMKILPSGLHNLRQLQEISIEGCGNLESFPEGGLPCAKLKE 177 (355)
Q Consensus 98 ~~~~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~l~~~~~~~~~~~~L~~ 177 (355)
..+.+|++++++.+. +..+|.+++.+++|+.+.+.+|. +..+|..+....+|+.+.+..| .++.+|+...+.+.|++
T Consensus 238 p~p~nl~~~dis~n~-l~~lp~wi~~~~nle~l~~n~N~-l~~lp~ri~~~~~L~~l~~~~n-el~yip~~le~~~sL~t 314 (1081)
T KOG0618|consen 238 PVPLNLQYLDISHNN-LSNLPEWIGACANLEALNANHNR-LVALPLRISRITSLVSLSAAYN-ELEYIPPFLEGLKSLRT 314 (1081)
T ss_pred cccccceeeecchhh-hhcchHHHHhcccceEecccchh-HHhhHHHHhhhhhHHHHHhhhh-hhhhCCCcccccceeee
Confidence 455789999999988 88899999999999999999988 6888888888899999999987 78888888888899999
Q ss_pred EEEccccCcCcccccccC-CC-CCceEEEe------------------------ecCcC-----CCCCCCCccEEEecCC
Q 018478 178 VVIRWCGRLEALPKGLHN-LK-SLQKLTIG------------------------KGGLE-----EDGLPTNLHSLDIRGN 226 (355)
Q Consensus 178 L~l~~~~~~~~~p~~l~~-~~-~L~~L~l~------------------------~~~i~-----~~~~~~~L~~L~l~~~ 226 (355)
|++..| .+.++|+.+.. .. +|+.|..+ .+.+. ......+|+.|+++.|
T Consensus 315 LdL~~N-~L~~lp~~~l~v~~~~l~~ln~s~n~l~~lp~~~e~~~~~Lq~LylanN~Ltd~c~p~l~~~~hLKVLhLsyN 393 (1081)
T KOG0618|consen 315 LDLQSN-NLPSLPDNFLAVLNASLNTLNVSSNKLSTLPSYEENNHAALQELYLANNHLTDSCFPVLVNFKHLKVLHLSYN 393 (1081)
T ss_pred eeehhc-cccccchHHHhhhhHHHHHHhhhhccccccccccchhhHHHHHHHHhcCcccccchhhhccccceeeeeeccc
Confidence 999984 56677763322 11 13333333 22222 2223345555555554
Q ss_pred cchhhhhhhhcccCCCCCccceeEecccCCcccccCccccccCCCCCCCCccceEEeccCCCcccccccCCCCCCccEEe
Q 018478 227 MEIWKSMIEWGQGFHRFSSLRELRIEGCDDDMVSFPPEDIRMGTTLPLPTSLTSLAIFSFPNLERLSSSIVDLQNLTSLY 306 (355)
Q Consensus 227 ~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~l~~~~~~~~~L~~L~ 306 (355)
+ +..++... +.++..|++|+++| +.++.+|... .....|++|...+ +.+..+| .+..++.|+.+|
T Consensus 394 r-L~~fpas~---~~kle~LeeL~LSG--NkL~~Lp~tv-------a~~~~L~tL~ahs-N~l~~fP-e~~~l~qL~~lD 458 (1081)
T KOG0618|consen 394 R-LNSFPASK---LRKLEELEELNLSG--NKLTTLPDTV-------ANLGRLHTLRAHS-NQLLSFP-ELAQLPQLKVLD 458 (1081)
T ss_pred c-cccCCHHH---HhchHHhHHHhccc--chhhhhhHHH-------HhhhhhHHHhhcC-Cceeech-hhhhcCcceEEe
Confidence 4 22222221 44555555555555 4555555444 3444555555554 4555555 456677788888
Q ss_pred eCCCCCCcccCCC-CCC-CCccEEEecCCch
Q 018478 307 LVGCPKLKYFPEK-GLP-SSLLELWIGGCPL 335 (355)
Q Consensus 307 l~~~~~l~~~~~~-~~~-~~L~~L~l~~c~~ 335 (355)
++.| +++.+-.. ..+ ++|++||+.++.+
T Consensus 459 lS~N-~L~~~~l~~~~p~p~LkyLdlSGN~~ 488 (1081)
T KOG0618|consen 459 LSCN-NLSEVTLPEALPSPNLKYLDLSGNTR 488 (1081)
T ss_pred cccc-hhhhhhhhhhCCCcccceeeccCCcc
Confidence 8766 67665432 235 7888888888774
No 13
>KOG0472 consensus Leucine-rich repeat protein [Function unknown]
Probab=99.61 E-value=1.9e-18 Score=150.89 Aligned_cols=190 Identities=26% Similarity=0.323 Sum_probs=86.0
Q ss_pred cccEEEEccCcchhchhhhccCCCCCcEEEeeccCCcCcccccccCCCCCceEeccccCCCcCCCCCCCCCCCcceEEEc
Q 018478 102 SLKSLRVQGCSKLESIAETLDNSTSLETIHIFYCENMKILPSGLHNLRQLQEISIEGCGNLESFPEGGLPCAKLKEVVIR 181 (355)
Q Consensus 102 ~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~l~~~~~~~~~~~~L~~L~l~ 181 (355)
++..++.+.|. +..+|+.++++..|+.++..+|. +.++|.++.++.++..+++.++ .++++|+....|+.|++++..
T Consensus 115 ~l~~l~~s~n~-~~el~~~i~~~~~l~dl~~~~N~-i~slp~~~~~~~~l~~l~~~~n-~l~~l~~~~i~m~~L~~ld~~ 191 (565)
T KOG0472|consen 115 SLVKLDCSSNE-LKELPDSIGRLLDLEDLDATNNQ-ISSLPEDMVNLSKLSKLDLEGN-KLKALPENHIAMKRLKHLDCN 191 (565)
T ss_pred hhhhhhccccc-eeecCchHHHHhhhhhhhccccc-cccCchHHHHHHHHHHhhcccc-chhhCCHHHHHHHHHHhcccc
Confidence 34444444443 33344444444444444444433 4444444444444444444443 334444333334444444444
Q ss_pred cccCcCcccccccCCCCCceEEEe---ecCcCCCCCCCCccEEEecCCcchhhhhhhhcccCCCCCccceeEecccCCcc
Q 018478 182 WCGRLEALPKGLHNLKSLQKLTIG---KGGLEEDGLPTNLHSLDIRGNMEIWKSMIEWGQGFHRFSSLRELRIEGCDDDM 258 (355)
Q Consensus 182 ~~~~~~~~p~~l~~~~~L~~L~l~---~~~i~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~ 258 (355)
. +.++.+|..++.+.+|+.|++. ...+|++..++.|.++.+..|. ++..+.+. ...++++..||+.. +.+
T Consensus 192 ~-N~L~tlP~~lg~l~~L~~LyL~~Nki~~lPef~gcs~L~Elh~g~N~-i~~lpae~---~~~L~~l~vLDLRd--Nkl 264 (565)
T KOG0472|consen 192 S-NLLETLPPELGGLESLELLYLRRNKIRFLPEFPGCSLLKELHVGENQ-IEMLPAEH---LKHLNSLLVLDLRD--NKL 264 (565)
T ss_pred h-hhhhcCChhhcchhhhHHHHhhhcccccCCCCCccHHHHHHHhcccH-HHhhHHHH---hcccccceeeeccc--ccc
Confidence 3 2344445555555555555444 2334444444444444444433 23233222 34445555555554 455
Q ss_pred cccCccccccCCCCCCCCccceEEeccCCCcccccccCCCCCCccEEeeCCC
Q 018478 259 VSFPPEDIRMGTTLPLPTSLTSLAIFSFPNLERLSSSIVDLQNLTSLYLVGC 310 (355)
Q Consensus 259 ~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~l~~~~~~~~~L~~L~l~~~ 310 (355)
+++|.+. ..+.+|+.||+++ +.+..+|...+++ +|+.|.+.++
T Consensus 265 ke~Pde~-------clLrsL~rLDlSN-N~is~Lp~sLgnl-hL~~L~leGN 307 (565)
T KOG0472|consen 265 KEVPDEI-------CLLRSLERLDLSN-NDISSLPYSLGNL-HLKFLALEGN 307 (565)
T ss_pred ccCchHH-------HHhhhhhhhcccC-CccccCCcccccc-eeeehhhcCC
Confidence 5555544 3444455555554 4555555444444 5555555554
No 14
>KOG0472 consensus Leucine-rich repeat protein [Function unknown]
Probab=99.60 E-value=1.6e-18 Score=151.29 Aligned_cols=259 Identities=25% Similarity=0.290 Sum_probs=204.5
Q ss_pred CCcceEecccCccccccccccCcCCCCCCCccccccccccEEEecCCCccchhccccccchhccccc-cCCCCCcccEEE
Q 018478 29 RSLKRLDIQCCSNIRTLTMEEGIQSSSSSSSRRYTSYLLEELCISSCRSLTSIFSKNELSATLESLE-VGNLPPSLKSLR 107 (355)
Q Consensus 29 ~~L~~L~l~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~~~~~n~~~~~~~~~~-~~~~~~~L~~L~ 107 (355)
..|+++.+.. +.++.+..+. .++..++.+.+.+. .+... | ..+-...++.++
T Consensus 45 v~l~~lils~-N~l~~l~~dl------------~nL~~l~vl~~~~n-~l~~l-------------p~aig~l~~l~~l~ 97 (565)
T KOG0472|consen 45 VDLQKLILSH-NDLEVLREDL------------KNLACLTVLNVHDN-KLSQL-------------PAAIGELEALKSLN 97 (565)
T ss_pred cchhhhhhcc-CchhhccHhh------------hcccceeEEEeccc-hhhhC-------------CHHHHHHHHHHHhh
Confidence 4567777776 4455544432 34667778888774 34444 3 335556889999
Q ss_pred EccCcchhchhhhccCCCCCcEEEeeccCCcCcccccccCCCCCceEeccccCCCcCCCCCCCCCCCcceEEEccccCcC
Q 018478 108 VQGCSKLESIAETLDNSTSLETIHIFYCENMKILPSGLHNLRQLQEISIEGCGNLESFPEGGLPCAKLKEVVIRWCGRLE 187 (355)
Q Consensus 108 l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~l~~~~~~~~~~~~L~~L~l~~~~~~~ 187 (355)
.++|. +..+|+.++.+.+|..+++++|. +.+++++++.+..++.++..+| ++..+|..++.+.++..+++.+| .+.
T Consensus 98 vs~n~-ls~lp~~i~s~~~l~~l~~s~n~-~~el~~~i~~~~~l~dl~~~~N-~i~slp~~~~~~~~l~~l~~~~n-~l~ 173 (565)
T KOG0472|consen 98 VSHNK-LSELPEQIGSLISLVKLDCSSNE-LKELPDSIGRLLDLEDLDATNN-QISSLPEDMVNLSKLSKLDLEGN-KLK 173 (565)
T ss_pred cccch-HhhccHHHhhhhhhhhhhccccc-eeecCchHHHHhhhhhhhcccc-ccccCchHHHHHHHHHHhhcccc-chh
Confidence 99887 88889888899999999999877 7778888999999999998876 78889999999999999999995 456
Q ss_pred cccccccCCCCCceEEEe---ecCcC-CCCCCCCccEEEecCCcchhhhhhhhcccCCCCCccceeEecccCCcccccCc
Q 018478 188 ALPKGLHNLKSLQKLTIG---KGGLE-EDGLPTNLHSLDIRGNMEIWKSMIEWGQGFHRFSSLRELRIEGCDDDMVSFPP 263 (355)
Q Consensus 188 ~~p~~l~~~~~L~~L~l~---~~~i~-~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~ 263 (355)
.+|...-.++.|++++.. .+.+| +.+.+.+|+.|++..|. +...|. |.++..|+++.++. +.++.+|+
T Consensus 174 ~l~~~~i~m~~L~~ld~~~N~L~tlP~~lg~l~~L~~LyL~~Nk-i~~lPe-----f~gcs~L~Elh~g~--N~i~~lpa 245 (565)
T KOG0472|consen 174 ALPENHIAMKRLKHLDCNSNLLETLPPELGGLESLELLYLRRNK-IRFLPE-----FPGCSLLKELHVGE--NQIEMLPA 245 (565)
T ss_pred hCCHHHHHHHHHHhcccchhhhhcCChhhcchhhhHHHHhhhcc-cccCCC-----CCccHHHHHHHhcc--cHHHhhHH
Confidence 666665559999999988 45555 46778899999999876 444553 78999999999998 88889998
Q ss_pred cccccCCCCCCCCccceEEeccCCCcccccccCCCCCCccEEeeCCCCCCcccCCC-CCCCCccEEEecCCch
Q 018478 264 EDIRMGTTLPLPTSLTSLAIFSFPNLERLSSSIVDLQNLTSLYLVGCPKLKYFPEK-GLPSSLLELWIGGCPL 335 (355)
Q Consensus 264 ~~~~~~~~~~~~~~L~~L~l~~~~~l~~l~~~~~~~~~L~~L~l~~~~~l~~~~~~-~~~~~L~~L~l~~c~~ 335 (355)
+.. ..++++..||+.+ ++++.+|..+.-+++|..|+++++ .|+.+|.. |-+ .|+.|-+.+.|-
T Consensus 246 e~~------~~L~~l~vLDLRd-Nklke~Pde~clLrsL~rLDlSNN-~is~Lp~sLgnl-hL~~L~leGNPl 309 (565)
T KOG0472|consen 246 EHL------KHLNSLLVLDLRD-NKLKEVPDEICLLRSLERLDLSNN-DISSLPYSLGNL-HLKFLALEGNPL 309 (565)
T ss_pred HHh------cccccceeeeccc-cccccCchHHHHhhhhhhhcccCC-ccccCCcccccc-eeeehhhcCCch
Confidence 773 4678999999999 899999999999999999999998 79988864 224 778888888884
No 15
>PRK15370 E3 ubiquitin-protein ligase SlrP; Provisional
Probab=99.59 E-value=3.9e-15 Score=146.04 Aligned_cols=243 Identities=18% Similarity=0.254 Sum_probs=180.7
Q ss_pred CCcceEecccCccccccccccCcCCCCCCCccccccccccEEEecCCCccchhccccccchhccccccCCCCCcccEEEE
Q 018478 29 RSLKRLDIQCCSNIRTLTMEEGIQSSSSSSSRRYTSYLLEELCISSCRSLTSIFSKNELSATLESLEVGNLPPSLKSLRV 108 (355)
Q Consensus 29 ~~L~~L~l~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~~~~~n~~~~~~~~~~~~~~~~~L~~L~l 108 (355)
.+..+|++.+ ..+..+|..+ .++|+.|+++++ .++.+ +... +.+|+.|++
T Consensus 178 ~~~~~L~L~~-~~LtsLP~~I--------------p~~L~~L~Ls~N-~LtsL-------------P~~l-~~nL~~L~L 227 (754)
T PRK15370 178 NNKTELRLKI-LGLTTIPACI--------------PEQITTLILDNN-ELKSL-------------PENL-QGNIKTLYA 227 (754)
T ss_pred cCceEEEeCC-CCcCcCCccc--------------ccCCcEEEecCC-CCCcC-------------Chhh-ccCCCEEEC
Confidence 4567888887 4577888765 567999999875 56666 5433 368999999
Q ss_pred ccCcchhchhhhccCCCCCcEEEeeccCCcCcccccccCCCCCceEeccccCCCcCCCCCCCCCCCcceEEEccccCcCc
Q 018478 109 QGCSKLESIAETLDNSTSLETIHIFYCENMKILPSGLHNLRQLQEISIEGCGNLESFPEGGLPCAKLKEVVIRWCGRLEA 188 (355)
Q Consensus 109 ~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~l~~~~~~~~~~~~L~~L~l~~~~~~~~ 188 (355)
++|. ++.+|..+ ..+|+.|++++|. +..+|..+. .+|+.|++++| .+..+|..+. ++|+.|++++| .++.
T Consensus 228 s~N~-LtsLP~~l--~~~L~~L~Ls~N~-L~~LP~~l~--s~L~~L~Ls~N-~L~~LP~~l~--~sL~~L~Ls~N-~Lt~ 297 (754)
T PRK15370 228 NSNQ-LTSIPATL--PDTIQEMELSINR-ITELPERLP--SALQSLDLFHN-KISCLPENLP--EELRYLSVYDN-SIRT 297 (754)
T ss_pred CCCc-cccCChhh--hccccEEECcCCc-cCcCChhHh--CCCCEEECcCC-ccCccccccC--CCCcEEECCCC-cccc
Confidence 9887 78888765 3589999999988 667877653 58999999976 7778887664 48999999996 5666
Q ss_pred ccccccCCCCCceEEEeecCcCCC--CCCCCccEEEecCCcchhhhhhhhcccCCCCCccceeEecccCCcccccCcccc
Q 018478 189 LPKGLHNLKSLQKLTIGKGGLEED--GLPTNLHSLDIRGNMEIWKSMIEWGQGFHRFSSLRELRIEGCDDDMVSFPPEDI 266 (355)
Q Consensus 189 ~p~~l~~~~~L~~L~l~~~~i~~~--~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~ 266 (355)
+|..+. ++|+.|+++.+.+... ..+++|+.|++.+|. ++.++..+ .++|+.|++++ +.+..+|..
T Consensus 298 LP~~lp--~sL~~L~Ls~N~Lt~LP~~l~~sL~~L~Ls~N~-Lt~LP~~l------~~sL~~L~Ls~--N~L~~LP~~-- 364 (754)
T PRK15370 298 LPAHLP--SGITHLNVQSNSLTALPETLPPGLKTLEAGENA-LTSLPASL------PPELQVLDVSK--NQITVLPET-- 364 (754)
T ss_pred Ccccch--hhHHHHHhcCCccccCCccccccceeccccCCc-cccCChhh------cCcccEEECCC--CCCCcCChh--
Confidence 776543 4788888885444432 345799999999986 34344322 26899999998 567777763
Q ss_pred ccCCCCCCCCccceEEeccCCCcccccccCCCCCCccEEeeCCCCCCcccCCCC-----CCCCccEEEecCCch
Q 018478 267 RMGTTLPLPTSLTSLAIFSFPNLERLSSSIVDLQNLTSLYLVGCPKLKYFPEKG-----LPSSLLELWIGGCPL 335 (355)
Q Consensus 267 ~~~~~~~~~~~L~~L~l~~~~~l~~l~~~~~~~~~L~~L~l~~~~~l~~~~~~~-----~~~~L~~L~l~~c~~ 335 (355)
.+++|+.|++++ +.++.+|..+. ..|+.|++++| +++.+|... ..+.+..+++.+++-
T Consensus 365 -------lp~~L~~LdLs~-N~Lt~LP~~l~--~sL~~LdLs~N-~L~~LP~sl~~~~~~~~~l~~L~L~~Npl 427 (754)
T PRK15370 365 -------LPPTITTLDVSR-NALTNLPENLP--AALQIMQASRN-NLVRLPESLPHFRGEGPQPTRIIVEYNPF 427 (754)
T ss_pred -------hcCCcCEEECCC-CcCCCCCHhHH--HHHHHHhhccC-CcccCchhHHHHhhcCCCccEEEeeCCCc
Confidence 357899999999 57888886432 47999999998 788887531 147889999998873
No 16
>KOG0618 consensus Serine/threonine phosphatase 2C containing leucine-rich repeats, similar to SCN circadian oscillatory protein (SCOP) [Signal transduction mechanisms]
Probab=99.56 E-value=1.2e-16 Score=152.57 Aligned_cols=192 Identities=23% Similarity=0.262 Sum_probs=118.7
Q ss_pred cccEEEEccCcchhchhhhccCCCCCcEEEeeccCCcCcccccccC-CCC-CceEeccccCCCcCCCCC-CCCCCCcceE
Q 018478 102 SLKSLRVQGCSKLESIAETLDNSTSLETIHIFYCENMKILPSGLHN-LRQ-LQEISIEGCGNLESFPEG-GLPCAKLKEV 178 (355)
Q Consensus 102 ~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~-l~~-L~~L~l~~~~~l~~~~~~-~~~~~~L~~L 178 (355)
+|+.|++..|. ++.+|+......+|++|++..|. +..+|+.+.. ... |+.++.+.+ .+...|.. -.....|+.|
T Consensus 288 ~L~~l~~~~ne-l~yip~~le~~~sL~tLdL~~N~-L~~lp~~~l~v~~~~l~~ln~s~n-~l~~lp~~~e~~~~~Lq~L 364 (1081)
T KOG0618|consen 288 SLVSLSAAYNE-LEYIPPFLEGLKSLRTLDLQSNN-LPSLPDNFLAVLNASLNTLNVSSN-KLSTLPSYEENNHAALQEL 364 (1081)
T ss_pred hHHHHHhhhhh-hhhCCCcccccceeeeeeehhcc-ccccchHHHhhhhHHHHHHhhhhc-cccccccccchhhHHHHHH
Confidence 44444444444 44444444444455555554444 4444332111 111 333333332 23333321 1124567788
Q ss_pred EEccccCcCcccccccCCCCCceEEEee---cCcCCC--CCCCCccEEEecCCcchhhhhhhhcccCCCCCccceeEecc
Q 018478 179 VIRWCGRLEALPKGLHNLKSLQKLTIGK---GGLEED--GLPTNLHSLDIRGNMEIWKSMIEWGQGFHRFSSLRELRIEG 253 (355)
Q Consensus 179 ~l~~~~~~~~~p~~l~~~~~L~~L~l~~---~~i~~~--~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~l~~L~~L~l~~ 253 (355)
++.+|......-..+..+++|+.|+++. +.||+. ...+.|+.|+++||. ++.++.. +.+++.|++|...+
T Consensus 365 ylanN~Ltd~c~p~l~~~~hLKVLhLsyNrL~~fpas~~~kle~LeeL~LSGNk-L~~Lp~t----va~~~~L~tL~ahs 439 (1081)
T KOG0618|consen 365 YLANNHLTDSCFPVLVNFKHLKVLHLSYNRLNSFPASKLRKLEELEELNLSGNK-LTTLPDT----VANLGRLHTLRAHS 439 (1081)
T ss_pred HHhcCcccccchhhhccccceeeeeecccccccCCHHHHhchHHhHHHhcccch-hhhhhHH----HHhhhhhHHHhhcC
Confidence 8887654444445778899999999994 556654 345789999999987 4445543 56889999999987
Q ss_pred cCCcccccCccccccCCCCCCCCccceEEeccCCCcccccccCCCC-CCccEEeeCCCCC
Q 018478 254 CDDDMVSFPPEDIRMGTTLPLPTSLTSLAIFSFPNLERLSSSIVDL-QNLTSLYLVGCPK 312 (355)
Q Consensus 254 ~~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~l~~~~~~~-~~L~~L~l~~~~~ 312 (355)
+++..+| +. ...+.|+.+|++. ++++.+.....-- |+|++|++++|++
T Consensus 440 --N~l~~fP-e~-------~~l~qL~~lDlS~-N~L~~~~l~~~~p~p~LkyLdlSGN~~ 488 (1081)
T KOG0618|consen 440 --NQLLSFP-EL-------AQLPQLKVLDLSC-NNLSEVTLPEALPSPNLKYLDLSGNTR 488 (1081)
T ss_pred --Cceeech-hh-------hhcCcceEEeccc-chhhhhhhhhhCCCcccceeeccCCcc
Confidence 7888999 45 4788999999996 7877543211222 8999999999976
No 17
>KOG4237 consensus Extracellular matrix protein slit, contains leucine-rich and EGF-like repeats [Extracellular structures; Signal transduction mechanisms]
Probab=99.45 E-value=9.4e-16 Score=133.87 Aligned_cols=277 Identities=17% Similarity=0.143 Sum_probs=178.4
Q ss_pred cCcccccCccCCCcceEecccCccccccccccCcCCCCCCCccccccccccEEEecCCCccchhccccccchhccccccC
Q 018478 18 SLTYLAAVQLPRSLKRLDIQCCSNIRTLTMEEGIQSSSSSSSRRYTSYLLEELCISSCRSLTSIFSKNELSATLESLEVG 97 (355)
Q Consensus 18 ~l~~l~~~~~~~~L~~L~l~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~~~~~n~~~~~~~~~~~~ 97 (355)
+++++| ..+|+.-..+.|.. ++|+.+|... |..+++|+.|+|++. +++.+ ...
T Consensus 57 GL~eVP-~~LP~~tveirLdq-N~I~~iP~~a-----------F~~l~~LRrLdLS~N-~Is~I-------------~p~ 109 (498)
T KOG4237|consen 57 GLTEVP-ANLPPETVEIRLDQ-NQISSIPPGA-----------FKTLHRLRRLDLSKN-NISFI-------------APD 109 (498)
T ss_pred CcccCc-ccCCCcceEEEecc-CCcccCChhh-----------ccchhhhceeccccc-chhhc-------------ChH
Confidence 566776 55677788888887 7788888876 777888888888874 55555 222
Q ss_pred --CCCCcccEEEEccCcchhchhh-hccCCCCCcEEEeeccCCcCcccccccCCCCCceEeccccCCCcCCCC-CCCCCC
Q 018478 98 --NLPPSLKSLRVQGCSKLESIAE-TLDNSTSLETIHIFYCENMKILPSGLHNLRQLQEISIEGCGNLESFPE-GGLPCA 173 (355)
Q Consensus 98 --~~~~~L~~L~l~~~~~~~~~~~-~~~~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~l~~~~~-~~~~~~ 173 (355)
..+++|..|.+.++.+++.+|+ .|+++..|+.|.+.-|...-...+.+..+++|..|.+.++ .++.++. .+..+.
T Consensus 110 AF~GL~~l~~Lvlyg~NkI~~l~k~~F~gL~slqrLllNan~i~Cir~~al~dL~~l~lLslyDn-~~q~i~~~tf~~l~ 188 (498)
T KOG4237|consen 110 AFKGLASLLSLVLYGNNKITDLPKGAFGGLSSLQRLLLNANHINCIRQDALRDLPSLSLLSLYDN-KIQSICKGTFQGLA 188 (498)
T ss_pred hhhhhHhhhHHHhhcCCchhhhhhhHhhhHHHHHHHhcChhhhcchhHHHHHHhhhcchhcccch-hhhhhccccccchh
Confidence 3335677777777555888874 4677888888877776633333466777888888888775 5666665 556677
Q ss_pred CcceEEEccccCcCc------------ccccccCCCCCceEEEe---ecCcCCCCCCCCccEE--EecCCcchhhhhhhh
Q 018478 174 KLKEVVIRWCGRLEA------------LPKGLHNLKSLQKLTIG---KGGLEEDGLPTNLHSL--DIRGNMEIWKSMIEW 236 (355)
Q Consensus 174 ~L~~L~l~~~~~~~~------------~p~~l~~~~~L~~L~l~---~~~i~~~~~~~~L~~L--~l~~~~~~~~~~~~~ 236 (355)
+++.+.+..|..+.+ .|..+++..-..-..+. .+.+....+.-.++.+ .+.+....+...+..
T Consensus 189 ~i~tlhlA~np~icdCnL~wla~~~a~~~ietsgarc~~p~rl~~~Ri~q~~a~kf~c~~esl~s~~~~~d~~d~~cP~~ 268 (498)
T KOG4237|consen 189 AIKTLHLAQNPFICDCNLPWLADDLAMNPIETSGARCVSPYRLYYKRINQEDARKFLCSLESLPSRLSSEDFPDSICPAK 268 (498)
T ss_pred ccchHhhhcCccccccccchhhhHHhhchhhcccceecchHHHHHHHhcccchhhhhhhHHhHHHhhccccCcCCcChHH
Confidence 888888777653221 11111111111111111 2222221111112221 111111122222222
Q ss_pred cccCCCCCccceeEecccCCcccccCccccccCCCCCCCCccceEEeccCCCcccccc-cCCCCCCccEEeeCCCCCCcc
Q 018478 237 GQGFHRFSSLRELRIEGCDDDMVSFPPEDIRMGTTLPLPTSLTSLAIFSFPNLERLSS-SIVDLQNLTSLYLVGCPKLKY 315 (355)
Q Consensus 237 ~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~l~~-~~~~~~~L~~L~l~~~~~l~~ 315 (355)
. |+.+++|++|++++ +.++.+.+..+ .....+++|.+.. +.++.+.. .+.++..|+.|++.+| +|+.
T Consensus 269 c--f~~L~~L~~lnlsn--N~i~~i~~~aF------e~~a~l~eL~L~~-N~l~~v~~~~f~~ls~L~tL~L~~N-~it~ 336 (498)
T KOG4237|consen 269 C--FKKLPNLRKLNLSN--NKITRIEDGAF------EGAAELQELYLTR-NKLEFVSSGMFQGLSGLKTLSLYDN-QITT 336 (498)
T ss_pred H--HhhcccceEeccCC--Cccchhhhhhh------cchhhhhhhhcCc-chHHHHHHHhhhccccceeeeecCC-eeEE
Confidence 3 88999999999998 78888877665 6778999999998 78888765 4588999999999998 8999
Q ss_pred cCCCCC--CCCccEEEecCCc
Q 018478 316 FPEKGL--PSSLLELWIGGCP 334 (355)
Q Consensus 316 ~~~~~~--~~~L~~L~l~~c~ 334 (355)
+....+ ..+|.+|.+-.+|
T Consensus 337 ~~~~aF~~~~~l~~l~l~~Np 357 (498)
T KOG4237|consen 337 VAPGAFQTLFSLSTLNLLSNP 357 (498)
T ss_pred EecccccccceeeeeehccCc
Confidence 877655 5788888887655
No 18
>KOG0617 consensus Ras suppressor protein (contains leucine-rich repeats) [Signal transduction mechanisms]
Probab=99.31 E-value=3.4e-14 Score=110.83 Aligned_cols=160 Identities=26% Similarity=0.477 Sum_probs=101.4
Q ss_pred CCCCCcEEEeeccCCcCcccccccCCCCCceEeccccCCCcCCCCCCCCCCCcceEEEccccCcCcccccccCCCCCceE
Q 018478 123 NSTSLETIHIFYCENMKILPSGLHNLRQLQEISIEGCGNLESFPEGGLPCAKLKEVVIRWCGRLEALPKGLHNLKSLQKL 202 (355)
Q Consensus 123 ~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~l~~~~~~~~~~~~L~~L~l~~~~~~~~~p~~l~~~~~L~~L 202 (355)
++.+.+.|.+++|. +..+|..++.+.+|+.|+++++ .++.+|..+.++++|+.|.++. +++..+|.+|+.++.|++|
T Consensus 31 ~~s~ITrLtLSHNK-l~~vppnia~l~nlevln~~nn-qie~lp~~issl~klr~lnvgm-nrl~~lprgfgs~p~levl 107 (264)
T KOG0617|consen 31 NMSNITRLTLSHNK-LTVVPPNIAELKNLEVLNLSNN-QIEELPTSISSLPKLRILNVGM-NRLNILPRGFGSFPALEVL 107 (264)
T ss_pred chhhhhhhhcccCc-eeecCCcHHHhhhhhhhhcccc-hhhhcChhhhhchhhhheecch-hhhhcCccccCCCchhhhh
Confidence 35555666666655 5556666666666666666654 5666666666666666666665 3455666666666666666
Q ss_pred EEeecCcCCCCCCCCccEEEecCCcchhhhhhhhcccCCCCCccceeEecccCCcccccCccccccCCCCCCCCccceEE
Q 018478 203 TIGKGGLEEDGLPTNLHSLDIRGNMEIWKSMIEWGQGFHRFSSLRELRIEGCDDDMVSFPPEDIRMGTTLPLPTSLTSLA 282 (355)
Q Consensus 203 ~l~~~~i~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~ 282 (355)
++..+.+.+...+ +| |-.++.|+.|+++. +.++-+|.+. ..+++|+.|.
T Consensus 108 dltynnl~e~~lp---------gn-------------ff~m~tlralyl~d--ndfe~lp~dv-------g~lt~lqil~ 156 (264)
T KOG0617|consen 108 DLTYNNLNENSLP---------GN-------------FFYMTTLRALYLGD--NDFEILPPDV-------GKLTNLQILS 156 (264)
T ss_pred hccccccccccCC---------cc-------------hhHHHHHHHHHhcC--CCcccCChhh-------hhhcceeEEe
Confidence 5543222221111 10 33445666677766 6667777766 4677888888
Q ss_pred eccCCCcccccccCCCCCCccEEeeCCCCCCcccCC
Q 018478 283 IFSFPNLERLSSSIVDLQNLTSLYLVGCPKLKYFPE 318 (355)
Q Consensus 283 l~~~~~l~~l~~~~~~~~~L~~L~l~~~~~l~~~~~ 318 (355)
+.+ +.+-.+|..+..+.+|++|.++++ +++-+|+
T Consensus 157 lrd-ndll~lpkeig~lt~lrelhiqgn-rl~vlpp 190 (264)
T KOG0617|consen 157 LRD-NDLLSLPKEIGDLTRLRELHIQGN-RLTVLPP 190 (264)
T ss_pred ecc-CchhhCcHHHHHHHHHHHHhcccc-eeeecCh
Confidence 887 677778877788888888888887 6776654
No 19
>KOG0617 consensus Ras suppressor protein (contains leucine-rich repeats) [Signal transduction mechanisms]
Probab=99.31 E-value=4.3e-14 Score=110.27 Aligned_cols=155 Identities=23% Similarity=0.374 Sum_probs=99.1
Q ss_pred CcccEEEEccCcchhchhhhccCCCCCcEEEeeccCCcCcccccccCCCCCceEeccccCCCcCCCCCCCCCCCcceEEE
Q 018478 101 PSLKSLRVQGCSKLESIAETLDNSTSLETIHIFYCENMKILPSGLHNLRQLQEISIEGCGNLESFPEGGLPCAKLKEVVI 180 (355)
Q Consensus 101 ~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~l~~~~~~~~~~~~L~~L~l 180 (355)
++.+.|.+++|. +..+|+.+..+.+|+.|++.+|. ++++|..+..+++|+.|++.-+ .+..+|.+|++.+.|+.|++
T Consensus 33 s~ITrLtLSHNK-l~~vppnia~l~nlevln~~nnq-ie~lp~~issl~klr~lnvgmn-rl~~lprgfgs~p~levldl 109 (264)
T KOG0617|consen 33 SNITRLTLSHNK-LTVVPPNIAELKNLEVLNLSNNQ-IEELPTSISSLPKLRILNVGMN-RLNILPRGFGSFPALEVLDL 109 (264)
T ss_pred hhhhhhhcccCc-eeecCCcHHHhhhhhhhhcccch-hhhcChhhhhchhhhheecchh-hhhcCccccCCCchhhhhhc
Confidence 455666666665 66666666666777777766655 6666666666777777776654 55666677777777777777
Q ss_pred ccccCc-CcccccccCCCCCceEEEeecC---cC-CCCCCCCccEEEecCCcchhhhhhhhcccCCCCCccceeEecccC
Q 018478 181 RWCGRL-EALPKGLHNLKSLQKLTIGKGG---LE-EDGLPTNLHSLDIRGNMEIWKSMIEWGQGFHRFSSLRELRIEGCD 255 (355)
Q Consensus 181 ~~~~~~-~~~p~~l~~~~~L~~L~l~~~~---i~-~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~l~~L~~L~l~~~~ 255 (355)
..|+.- ..+|..|..++.|+.|+++.+. +| +.+.+++|+.|.+.+|+.++ .+.+ ++.+++|++|.+.+
T Consensus 110 tynnl~e~~lpgnff~m~tlralyl~dndfe~lp~dvg~lt~lqil~lrdndll~-lpke----ig~lt~lrelhiqg-- 182 (264)
T KOG0617|consen 110 TYNNLNENSLPGNFFYMTTLRALYLGDNDFEILPPDVGKLTNLQILSLRDNDLLS-LPKE----IGDLTRLRELHIQG-- 182 (264)
T ss_pred cccccccccCCcchhHHHHHHHHHhcCCCcccCChhhhhhcceeEEeeccCchhh-CcHH----HHHHHHHHHHhccc--
Confidence 665432 3456666666666666666222 22 23455666777777776544 3333 56778888888888
Q ss_pred CcccccCccc
Q 018478 256 DDMVSFPPED 265 (355)
Q Consensus 256 ~~~~~~~~~~ 265 (355)
++++.+|++.
T Consensus 183 nrl~vlppel 192 (264)
T KOG0617|consen 183 NRLTVLPPEL 192 (264)
T ss_pred ceeeecChhh
Confidence 7777777655
No 20
>cd00116 LRR_RI Leucine-rich repeats (LRRs), ribonuclease inhibitor (RI)-like subfamily. LRRs are 20-29 residue sequence motifs present in many proteins that participate in protein-protein interactions and have different functions and cellular locations. LRRs correspond to structural units consisting of a beta strand (LxxLxLxxN/CxL conserved pattern) and an alpha helix. This alignment contains 12 strands corresponding to 11 full repeats, consistent with the extent observed in the subfamily acting as Ran GTPase Activating Proteins (RanGAP1).
Probab=99.28 E-value=7.6e-13 Score=119.47 Aligned_cols=113 Identities=19% Similarity=0.186 Sum_probs=61.4
Q ss_pred CCccEEEecCCcchhhhhhhhcccCCCCCccceeEecccCCcccccC-ccccccCCCCCCCCccceEEeccCCCcc----
Q 018478 216 TNLHSLDIRGNMEIWKSMIEWGQGFHRFSSLRELRIEGCDDDMVSFP-PEDIRMGTTLPLPTSLTSLAIFSFPNLE---- 290 (355)
Q Consensus 216 ~~L~~L~l~~~~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~-~~~~~~~~~~~~~~~L~~L~l~~~~~l~---- 290 (355)
++|+.|++++|.............+..+++|++|++++ | .+.... ....... ....+.|++|++++| .++
T Consensus 193 ~~L~~L~L~~n~i~~~~~~~l~~~~~~~~~L~~L~ls~-n-~l~~~~~~~l~~~~--~~~~~~L~~L~l~~n-~i~~~~~ 267 (319)
T cd00116 193 CNLEVLDLNNNGLTDEGASALAETLASLKSLEVLNLGD-N-NLTDAGAAALASAL--LSPNISLLTLSLSCN-DITDDGA 267 (319)
T ss_pred CCCCEEeccCCccChHHHHHHHHHhcccCCCCEEecCC-C-cCchHHHHHHHHHH--hccCCCceEEEccCC-CCCcHHH
Confidence 46777777776533222221111255678888888887 3 232210 0000000 012367888888885 442
Q ss_pred -cccccCCCCCCccEEeeCCCCCCcccCCCC-------CCCCccEEEecCCc
Q 018478 291 -RLSSSIVDLQNLTSLYLVGCPKLKYFPEKG-------LPSSLLELWIGGCP 334 (355)
Q Consensus 291 -~l~~~~~~~~~L~~L~l~~~~~l~~~~~~~-------~~~~L~~L~l~~c~ 334 (355)
.+...+..+++|+++++++| ++...+... ..+.|+++++.+.|
T Consensus 268 ~~l~~~~~~~~~L~~l~l~~N-~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 318 (319)
T cd00116 268 KDLAEVLAEKESLLELDLRGN-KFGEEGAQLLAESLLEPGNELESLWVKDDS 318 (319)
T ss_pred HHHHHHHhcCCCccEEECCCC-CCcHHHHHHHHHHHhhcCCchhhcccCCCC
Confidence 33334456688888988887 565443211 12678888877654
No 21
>KOG4341 consensus F-box protein containing LRR [General function prediction only]
Probab=99.17 E-value=9e-13 Score=116.29 Aligned_cols=283 Identities=16% Similarity=0.236 Sum_probs=137.0
Q ss_pred CCcceEecccCccccccccccCcCCCCCCCccccccccccEEEecCCCccchhccccccchhccccccCCCCCcccEEEE
Q 018478 29 RSLKRLDIQCCSNIRTLTMEEGIQSSSSSSSRRYTSYLLEELCISSCRSLTSIFSKNELSATLESLEVGNLPPSLKSLRV 108 (355)
Q Consensus 29 ~~L~~L~l~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~~~~~n~~~~~~~~~~~~~~~~~L~~L~l 108 (355)
..|++|.++||..+..-+.... ...+++++.|.+.+|..+++..-. .....+++|+.+++
T Consensus 138 g~lk~LSlrG~r~v~~sslrt~----------~~~CpnIehL~l~gc~~iTd~s~~----------sla~~C~~l~~l~L 197 (483)
T KOG4341|consen 138 GFLKELSLRGCRAVGDSSLRTF----------ASNCPNIEHLALYGCKKITDSSLL----------SLARYCRKLRHLNL 197 (483)
T ss_pred cccccccccccccCCcchhhHH----------hhhCCchhhhhhhcceeccHHHHH----------HHHHhcchhhhhhh
Confidence 3456666666654443332221 133566666666666555543000 11234456666666
Q ss_pred ccCcchhchh--hhccCCCCCcEEEeeccCCcCc--ccccccCCCCCceEeccccCCCc--CCCCCCCCCCCcceEEEcc
Q 018478 109 QGCSKLESIA--ETLDNSTSLETIHIFYCENMKI--LPSGLHNLRQLQEISIEGCGNLE--SFPEGGLPCAKLKEVVIRW 182 (355)
Q Consensus 109 ~~~~~~~~~~--~~~~~l~~L~~L~l~~~~~~~~--~~~~~~~l~~L~~L~l~~~~~l~--~~~~~~~~~~~L~~L~l~~ 182 (355)
..|..++... .....|++|++|+++.|+.+.. +.....++..++.+...+|.... .+-..-..+..+.++++..
T Consensus 198 ~~c~~iT~~~Lk~la~gC~kL~~lNlSwc~qi~~~gv~~~~rG~~~l~~~~~kGC~e~~le~l~~~~~~~~~i~~lnl~~ 277 (483)
T KOG4341|consen 198 HSCSSITDVSLKYLAEGCRKLKYLNLSWCPQISGNGVQALQRGCKELEKLSLKGCLELELEALLKAAAYCLEILKLNLQH 277 (483)
T ss_pred cccchhHHHHHHHHHHhhhhHHHhhhccCchhhcCcchHHhccchhhhhhhhcccccccHHHHHHHhccChHhhccchhh
Confidence 6655554321 1223466666666666664433 11223334445555444443221 1111111123344444445
Q ss_pred ccCcCccc--ccccCCCCCceEEEe-ecCcCC------CCCCCCccEEEecCCcchhhhhhhhcccCCCCCccceeEecc
Q 018478 183 CGRLEALP--KGLHNLKSLQKLTIG-KGGLEE------DGLPTNLHSLDIRGNMEIWKSMIEWGQGFHRFSSLRELRIEG 253 (355)
Q Consensus 183 ~~~~~~~p--~~l~~~~~L~~L~l~-~~~i~~------~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~l~~L~~L~l~~ 253 (355)
|..+++.. ..-..+..|+.|+.+ .+.+++ .....+|+.+.+.+|...++.-.... ..+++.|+.+++.+
T Consensus 278 c~~lTD~~~~~i~~~c~~lq~l~~s~~t~~~d~~l~aLg~~~~~L~~l~l~~c~~fsd~~ft~l--~rn~~~Le~l~~e~ 355 (483)
T KOG4341|consen 278 CNQLTDEDLWLIACGCHALQVLCYSSCTDITDEVLWALGQHCHNLQVLELSGCQQFSDRGFTML--GRNCPHLERLDLEE 355 (483)
T ss_pred hccccchHHHHHhhhhhHhhhhcccCCCCCchHHHHHHhcCCCceEEEeccccchhhhhhhhhh--hcCChhhhhhcccc
Confidence 54444321 111334455555555 222222 12345666666666665544332211 34556666666666
Q ss_pred cCCcccccCccccccCCCCCCCCccceEEeccCCCcccc-----cccCCCCCCccEEeeCCCCCCcccCCC--CCCCCcc
Q 018478 254 CDDDMVSFPPEDIRMGTTLPLPTSLTSLAIFSFPNLERL-----SSSIVDLQNLTSLYLVGCPKLKYFPEK--GLPSSLL 326 (355)
Q Consensus 254 ~~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~l-----~~~~~~~~~L~~L~l~~~~~l~~~~~~--~~~~~L~ 326 (355)
|.....-. + .......+.|+.+.+++|..++.- .....++..|..+.+++|+.++.--.. ..+++|+
T Consensus 356 -~~~~~d~t--L---~sls~~C~~lr~lslshce~itD~gi~~l~~~~c~~~~l~~lEL~n~p~i~d~~Le~l~~c~~Le 429 (483)
T KOG4341|consen 356 -CGLITDGT--L---ASLSRNCPRLRVLSLSHCELITDEGIRHLSSSSCSLEGLEVLELDNCPLITDATLEHLSICRNLE 429 (483)
T ss_pred -cceehhhh--H---hhhccCCchhccCChhhhhhhhhhhhhhhhhccccccccceeeecCCCCchHHHHHHHhhCcccc
Confidence 44332210 0 001134456666767666544432 333466777888888888766654332 2367888
Q ss_pred EEEecCCchhhHh
Q 018478 327 ELWIGGCPLIEEK 339 (355)
Q Consensus 327 ~L~l~~c~~l~~~ 339 (355)
.+++.+|...+..
T Consensus 430 ri~l~~~q~vtk~ 442 (483)
T KOG4341|consen 430 RIELIDCQDVTKE 442 (483)
T ss_pred eeeeechhhhhhh
Confidence 8888888766554
No 22
>KOG4237 consensus Extracellular matrix protein slit, contains leucine-rich and EGF-like repeats [Extracellular structures; Signal transduction mechanisms]
Probab=99.15 E-value=1.4e-12 Score=114.26 Aligned_cols=126 Identities=13% Similarity=0.185 Sum_probs=96.3
Q ss_pred CccEEeecccccCcccccCccC--CCcceEecccCccccccccccCcCCCCCCCccccccccccEEEecCCCccchhccc
Q 018478 7 SLEILEIWSCRSLTYLAAVQLP--RSLKRLDIQCCSNIRTLTMEEGIQSSSSSSSRRYTSYLLEELCISSCRSLTSIFSK 84 (355)
Q Consensus 7 ~L~~L~l~~~~~l~~l~~~~~~--~~L~~L~l~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~~~~~ 84 (355)
.-.+|.+. -+.+++||+..|. ++|++|+|+. ++|+.+..+. |.++.++.+|.+-+.+.++++
T Consensus 68 ~tveirLd-qN~I~~iP~~aF~~l~~LRrLdLS~-N~Is~I~p~A-----------F~GL~~l~~Lvlyg~NkI~~l--- 131 (498)
T KOG4237|consen 68 ETVEIRLD-QNQISSIPPGAFKTLHRLRRLDLSK-NNISFIAPDA-----------FKGLASLLSLVLYGNNKITDL--- 131 (498)
T ss_pred cceEEEec-cCCcccCChhhccchhhhceecccc-cchhhcChHh-----------hhhhHhhhHHHhhcCCchhhh---
Confidence 56778887 5789999998887 8999999999 7788877765 777888888888776677777
Q ss_pred cccchhccccccC--CCCCcccEEEEccCcchh-chhhhccCCCCCcEEEeeccCCcCcccc-cccCCCCCceEeccccC
Q 018478 85 NELSATLESLEVG--NLPPSLKSLRVQGCSKLE-SIAETLDNSTSLETIHIFYCENMKILPS-GLHNLRQLQEISIEGCG 160 (355)
Q Consensus 85 n~~~~~~~~~~~~--~~~~~L~~L~l~~~~~~~-~~~~~~~~l~~L~~L~l~~~~~~~~~~~-~~~~l~~L~~L~l~~~~ 160 (355)
+.+ ..+.+|+.|.+.-|. +. .....+..+++|..|.+.+|. ++.+++ ++..+..++.+.+..++
T Consensus 132 ----------~k~~F~gL~slqrLllNan~-i~Cir~~al~dL~~l~lLslyDn~-~q~i~~~tf~~l~~i~tlhlA~np 199 (498)
T KOG4237|consen 132 ----------PKGAFGGLSSLQRLLLNANH-INCIRQDALRDLPSLSLLSLYDNK-IQSICKGTFQGLAAIKTLHLAQNP 199 (498)
T ss_pred ----------hhhHhhhHHHHHHHhcChhh-hcchhHHHHHHhhhcchhcccchh-hhhhccccccchhccchHhhhcCc
Confidence 554 344678888887776 44 334667788999999999877 666665 67777788887776654
No 23
>cd00116 LRR_RI Leucine-rich repeats (LRRs), ribonuclease inhibitor (RI)-like subfamily. LRRs are 20-29 residue sequence motifs present in many proteins that participate in protein-protein interactions and have different functions and cellular locations. LRRs correspond to structural units consisting of a beta strand (LxxLxLxxN/CxL conserved pattern) and an alpha helix. This alignment contains 12 strands corresponding to 11 full repeats, consistent with the extent observed in the subfamily acting as Ran GTPase Activating Proteins (RanGAP1).
Probab=99.07 E-value=4e-11 Score=108.20 Aligned_cols=238 Identities=21% Similarity=0.159 Sum_probs=125.7
Q ss_pred cccccccEEEecCCCccchhccccccchhccccccCCCCCcccEEEEccCcch------hchhhhccCCCCCcEEEeecc
Q 018478 62 YTSYLLEELCISSCRSLTSIFSKNELSATLESLEVGNLPPSLKSLRVQGCSKL------ESIAETLDNSTSLETIHIFYC 135 (355)
Q Consensus 62 ~~~~~L~~L~l~~~~~l~~~~~~n~~~~~~~~~~~~~~~~~L~~L~l~~~~~~------~~~~~~~~~l~~L~~L~l~~~ 135 (355)
..+.+|+.+.++++. ++.. ..... + ......++++.++++++... ..++..+..+++|++|++++|
T Consensus 20 ~~l~~L~~l~l~~~~-l~~~----~~~~i-~--~~l~~~~~l~~l~l~~~~~~~~~~~~~~~~~~l~~~~~L~~L~l~~~ 91 (319)
T cd00116 20 PKLLCLQVLRLEGNT-LGEE----AAKAL-A--SALRPQPSLKELCLSLNETGRIPRGLQSLLQGLTKGCGLQELDLSDN 91 (319)
T ss_pred HHHhhccEEeecCCC-CcHH----HHHHH-H--HHHhhCCCceEEeccccccCCcchHHHHHHHHHHhcCceeEEEccCC
Confidence 336678888887764 2111 00000 0 11123356777777765422 123445556777777777776
Q ss_pred CCcCcccccccCCCC---CceEeccccCCCcC-----CCCCCCCC-CCcceEEEccccCcC----cccccccCCCCCceE
Q 018478 136 ENMKILPSGLHNLRQ---LQEISIEGCGNLES-----FPEGGLPC-AKLKEVVIRWCGRLE----ALPKGLHNLKSLQKL 202 (355)
Q Consensus 136 ~~~~~~~~~~~~l~~---L~~L~l~~~~~l~~-----~~~~~~~~-~~L~~L~l~~~~~~~----~~p~~l~~~~~L~~L 202 (355)
......+..+..+.+ |+.|++++|. +.. +...+..+ ++|++|++++|.... .++..+..+
T Consensus 92 ~~~~~~~~~~~~l~~~~~L~~L~ls~~~-~~~~~~~~l~~~l~~~~~~L~~L~L~~n~l~~~~~~~~~~~~~~~------ 164 (319)
T cd00116 92 ALGPDGCGVLESLLRSSSLQELKLNNNG-LGDRGLRLLAKGLKDLPPALEKLVLGRNRLEGASCEALAKALRAN------ 164 (319)
T ss_pred CCChhHHHHHHHHhccCcccEEEeeCCc-cchHHHHHHHHHHHhCCCCceEEEcCCCcCCchHHHHHHHHHHhC------
Confidence 643333333333333 7777776653 221 11122223 566666666654221 111222233
Q ss_pred EEeecCcCCCCCCCCccEEEecCCcchhhhhhhhcccCCCCCccceeEecccCCccc-----ccCccccccCCCCCCCCc
Q 018478 203 TIGKGGLEEDGLPTNLHSLDIRGNMEIWKSMIEWGQGFHRFSSLRELRIEGCDDDMV-----SFPPEDIRMGTTLPLPTS 277 (355)
Q Consensus 203 ~l~~~~i~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~-----~~~~~~~~~~~~~~~~~~ 277 (355)
.+|+.|++++|.............+..+++|++|++++ | .+. .+.... ...++
T Consensus 165 -------------~~L~~L~l~~n~l~~~~~~~l~~~l~~~~~L~~L~L~~-n-~i~~~~~~~l~~~~-------~~~~~ 222 (319)
T cd00116 165 -------------RDLKELNLANNGIGDAGIRALAEGLKANCNLEVLDLNN-N-GLTDEGASALAETL-------ASLKS 222 (319)
T ss_pred -------------CCcCEEECcCCCCchHHHHHHHHHHHhCCCCCEEeccC-C-ccChHHHHHHHHHh-------cccCC
Confidence 35666666666533222111111145568999999998 4 332 222222 45678
Q ss_pred cceEEeccCCCccc-----ccccC-CCCCCccEEeeCCCCCCcccCCC------CCCCCccEEEecCCchhhH
Q 018478 278 LTSLAIFSFPNLER-----LSSSI-VDLQNLTSLYLVGCPKLKYFPEK------GLPSSLLELWIGGCPLIEE 338 (355)
Q Consensus 278 L~~L~l~~~~~l~~-----l~~~~-~~~~~L~~L~l~~~~~l~~~~~~------~~~~~L~~L~l~~c~~l~~ 338 (355)
|++|++++| .++. +...+ ...+.|++|++++| .++..... ...++|+++++.++.--..
T Consensus 223 L~~L~ls~n-~l~~~~~~~l~~~~~~~~~~L~~L~l~~n-~i~~~~~~~l~~~~~~~~~L~~l~l~~N~l~~~ 293 (319)
T cd00116 223 LEVLNLGDN-NLTDAGAAALASALLSPNISLLTLSLSCN-DITDDGAKDLAEVLAEKESLLELDLRGNKFGEE 293 (319)
T ss_pred CCEEecCCC-cCchHHHHHHHHHHhccCCCceEEEccCC-CCCcHHHHHHHHHHhcCCCccEEECCCCCCcHH
Confidence 999999995 4442 11111 23579999999998 66521111 1147899999998864433
No 24
>KOG4658 consensus Apoptotic ATPase [Signal transduction mechanisms]
Probab=99.05 E-value=3.5e-10 Score=113.26 Aligned_cols=126 Identities=24% Similarity=0.314 Sum_probs=88.2
Q ss_pred CCcceEecccCccccccccccCcCCCCCCCccccccccccEEEecCCCc-cchhccccccchhcccccc--CCCCCcccE
Q 018478 29 RSLKRLDIQCCSNIRTLTMEEGIQSSSSSSSRRYTSYLLEELCISSCRS-LTSIFSKNELSATLESLEV--GNLPPSLKS 105 (355)
Q Consensus 29 ~~L~~L~l~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~-l~~~~~~n~~~~~~~~~~~--~~~~~~L~~ 105 (355)
...+...+.+ +.+..++.... ++.|+.|-+.+... +..+ +. ...++.|+.
T Consensus 523 ~~~rr~s~~~-~~~~~~~~~~~-------------~~~L~tLll~~n~~~l~~i-------------s~~ff~~m~~LrV 575 (889)
T KOG4658|consen 523 NSVRRMSLMN-NKIEHIAGSSE-------------NPKLRTLLLQRNSDWLLEI-------------SGEFFRSLPLLRV 575 (889)
T ss_pred hheeEEEEec-cchhhccCCCC-------------CCccceEEEeecchhhhhc-------------CHHHHhhCcceEE
Confidence 4455555555 44555544432 45677776665331 3333 32 345578888
Q ss_pred EEEccCcchhchhhhccCCCCCcEEEeeccCCcCcccccccCCCCCceEeccccCCCcCCCCCCCCCCCcceEEEcc
Q 018478 106 LRVQGCSKLESIAETLDNSTSLETIHIFYCENMKILPSGLHNLRQLQEISIEGCGNLESFPEGGLPCAKLKEVVIRW 182 (355)
Q Consensus 106 L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~l~~~~~~~~~~~~L~~L~l~~ 182 (355)
||+++|..+..+|..++.+-+|++|+++++. +..+|..++++..|.+|++..+..+..+|.....+.+|+.|.+..
T Consensus 576 LDLs~~~~l~~LP~~I~~Li~LryL~L~~t~-I~~LP~~l~~Lk~L~~Lnl~~~~~l~~~~~i~~~L~~Lr~L~l~~ 651 (889)
T KOG4658|consen 576 LDLSGNSSLSKLPSSIGELVHLRYLDLSDTG-ISHLPSGLGNLKKLIYLNLEVTGRLESIPGILLELQSLRVLRLPR 651 (889)
T ss_pred EECCCCCccCcCChHHhhhhhhhcccccCCC-ccccchHHHHHHhhheeccccccccccccchhhhcccccEEEeec
Confidence 8888888888888888888888888888877 778888888888888888887766666655555588888888766
No 25
>KOG4658 consensus Apoptotic ATPase [Signal transduction mechanisms]
Probab=99.01 E-value=2.8e-10 Score=113.94 Aligned_cols=229 Identities=23% Similarity=0.262 Sum_probs=152.6
Q ss_pred ccCCCCCcccEEEEccCcc-hhchh-hhccCCCCCcEEEeeccCCcCcccccccCCCCCceEeccccCCCcCCCCCCCCC
Q 018478 95 EVGNLPPSLKSLRVQGCSK-LESIA-ETLDNSTSLETIHIFYCENMKILPSGLHNLRQLQEISIEGCGNLESFPEGGLPC 172 (355)
Q Consensus 95 ~~~~~~~~L~~L~l~~~~~-~~~~~-~~~~~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~l~~~~~~~~~~ 172 (355)
+.....++|+.|-+.++.. +..++ ..|..++.|+.|++++|..+..+|..++++-+|+.|++++. .++.+|.++..+
T Consensus 539 ~~~~~~~~L~tLll~~n~~~l~~is~~ff~~m~~LrVLDLs~~~~l~~LP~~I~~Li~LryL~L~~t-~I~~LP~~l~~L 617 (889)
T KOG4658|consen 539 AGSSENPKLRTLLLQRNSDWLLEISGEFFRSLPLLRVLDLSGNSSLSKLPSSIGELVHLRYLDLSDT-GISHLPSGLGNL 617 (889)
T ss_pred cCCCCCCccceEEEeecchhhhhcCHHHHhhCcceEEEECCCCCccCcCChHHhhhhhhhcccccCC-CccccchHHHHH
Confidence 3333445899999988763 44444 44677999999999999999999999999999999999985 789999999999
Q ss_pred CCcceEEEccccCcCcccccccCCCCCceEEEeecCcC-------CCCCCCCccEEEecCCcchhhhhhhhcccCCCCCc
Q 018478 173 AKLKEVVIRWCGRLEALPKGLHNLKSLQKLTIGKGGLE-------EDGLPTNLHSLDIRGNMEIWKSMIEWGQGFHRFSS 245 (355)
Q Consensus 173 ~~L~~L~l~~~~~~~~~p~~l~~~~~L~~L~l~~~~i~-------~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~l~~ 245 (355)
.+|.+|++..+.....+|.....+.+|++|.+...... +...+.+|+.+.+..... ..... +..+++
T Consensus 618 k~L~~Lnl~~~~~l~~~~~i~~~L~~Lr~L~l~~s~~~~~~~~l~el~~Le~L~~ls~~~~s~-~~~e~-----l~~~~~ 691 (889)
T KOG4658|consen 618 KKLIYLNLEVTGRLESIPGILLELQSLRVLRLPRSALSNDKLLLKELENLEHLENLSITISSV-LLLED-----LLGMTR 691 (889)
T ss_pred HhhheeccccccccccccchhhhcccccEEEeeccccccchhhHHhhhcccchhhheeecchh-HhHhh-----hhhhHH
Confidence 99999999988777777777777999999999833322 123445555555544332 10111 333344
Q ss_pred cce----eEecccCCcccccCccccccCCCCCCCCccceEEeccCCCccccccc-----CCC-CCCccEEeeCCCCCCcc
Q 018478 246 LRE----LRIEGCDDDMVSFPPEDIRMGTTLPLPTSLTSLAIFSFPNLERLSSS-----IVD-LQNLTSLYLVGCPKLKY 315 (355)
Q Consensus 246 L~~----L~l~~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~l~~~-----~~~-~~~L~~L~l~~~~~l~~ 315 (355)
|.. +.+.+ |.. ....... ..+.+|+.|.+.+|...+....+ ... ++++..+.+.+|..++.
T Consensus 692 L~~~~~~l~~~~-~~~-~~~~~~~-------~~l~~L~~L~i~~~~~~e~~~~~~~~~~~~~~f~~l~~~~~~~~~~~r~ 762 (889)
T KOG4658|consen 692 LRSLLQSLSIEG-CSK-RTLISSL-------GSLGNLEELSILDCGISEIVIEWEESLIVLLCFPNLSKVSILNCHMLRD 762 (889)
T ss_pred HHHHhHhhhhcc-ccc-ceeeccc-------ccccCcceEEEEcCCCchhhcccccccchhhhHHHHHHHHhhccccccc
Confidence 442 22222 221 2222222 35678888888887654322211 122 55667777777766666
Q ss_pred cCCCCCCCCccEEEecCCchhhHh
Q 018478 316 FPEKGLPSSLLELWIGGCPLIEEK 339 (355)
Q Consensus 316 ~~~~~~~~~L~~L~l~~c~~l~~~ 339 (355)
.....++++|+.|.+.+|+.+...
T Consensus 763 l~~~~f~~~L~~l~l~~~~~~e~~ 786 (889)
T KOG4658|consen 763 LTWLLFAPHLTSLSLVSCRLLEDI 786 (889)
T ss_pred cchhhccCcccEEEEecccccccC
Confidence 655456788888888888766554
No 26
>KOG0532 consensus Leucine-rich repeat (LRR) protein, contains calponin homology domain [Cytoskeleton]
Probab=98.93 E-value=4.5e-11 Score=109.51 Aligned_cols=190 Identities=21% Similarity=0.296 Sum_probs=144.4
Q ss_pred ccEEEEccCcchhchhhhccCCCCCcEEEeeccCCcCcccccccCCCCCceEeccccCCCcCCCCCCCCCCCcceEEEcc
Q 018478 103 LKSLRVQGCSKLESIAETLDNSTSLETIHIFYCENMKILPSGLHNLRQLQEISIEGCGNLESFPEGGLPCAKLKEVVIRW 182 (355)
Q Consensus 103 L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~l~~~~~~~~~~~~L~~L~l~~ 182 (355)
-...|++.|. ...+|..+..+..|+.+.++.|. +..+|..+.++..|+.++++.| .+..+|..++.++ |+.|.+++
T Consensus 77 t~~aDlsrNR-~~elp~~~~~f~~Le~liLy~n~-~r~ip~~i~~L~~lt~l~ls~N-qlS~lp~~lC~lp-Lkvli~sN 152 (722)
T KOG0532|consen 77 TVFADLSRNR-FSELPEEACAFVSLESLILYHNC-IRTIPEAICNLEALTFLDLSSN-QLSHLPDGLCDLP-LKVLIVSN 152 (722)
T ss_pred hhhhhccccc-cccCchHHHHHHHHHHHHHHhcc-ceecchhhhhhhHHHHhhhccc-hhhcCChhhhcCc-ceeEEEec
Confidence 4456677776 67788777778888888888877 7778888888888888999886 6788888887776 88888876
Q ss_pred ccCcCcccccccCCCCCceEEEeecCcCCCCCCCCccEEEecCCcchhhhhhhhcccCCCCCccceeEecccCCcccccC
Q 018478 183 CGRLEALPKGLHNLKSLQKLTIGKGGLEEDGLPTNLHSLDIRGNMEIWKSMIEWGQGFHRFSSLRELRIEGCDDDMVSFP 262 (355)
Q Consensus 183 ~~~~~~~p~~l~~~~~L~~L~l~~~~i~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~ 262 (355)
++++.+|..++.... |..|+++.|...+ .+.. ++++.+|+.|.+.. +.+..+|
T Consensus 153 -Nkl~~lp~~ig~~~t-------------------l~~ld~s~nei~s-lpsq----l~~l~slr~l~vrR--n~l~~lp 205 (722)
T KOG0532|consen 153 -NKLTSLPEEIGLLPT-------------------LAHLDVSKNEIQS-LPSQ----LGYLTSLRDLNVRR--NHLEDLP 205 (722)
T ss_pred -CccccCCcccccchh-------------------HHHhhhhhhhhhh-chHH----hhhHHHHHHHHHhh--hhhhhCC
Confidence 567778877665544 4445556665433 3332 66788888898887 7888898
Q ss_pred ccccccCCCCCCCCccceEEeccCCCcccccccCCCCCCccEEeeCCCCCCcccCC----CCCCCCccEEEecCC
Q 018478 263 PEDIRMGTTLPLPTSLTSLAIFSFPNLERLSSSIVDLQNLTSLYLVGCPKLKYFPE----KGLPSSLLELWIGGC 333 (355)
Q Consensus 263 ~~~~~~~~~~~~~~~L~~L~l~~~~~l~~l~~~~~~~~~L~~L~l~~~~~l~~~~~----~~~~~~L~~L~l~~c 333 (355)
++. . --.|..||+++ +++..+|..|..|..|++|.+.+|| +++-|. .|...-.++|++..|
T Consensus 206 ~El-------~-~LpLi~lDfSc-Nkis~iPv~fr~m~~Lq~l~LenNP-LqSPPAqIC~kGkVHIFKyL~~qA~ 270 (722)
T KOG0532|consen 206 EEL-------C-SLPLIRLDFSC-NKISYLPVDFRKMRHLQVLQLENNP-LQSPPAQICEKGKVHIFKYLSTQAC 270 (722)
T ss_pred HHH-------h-CCceeeeeccc-CceeecchhhhhhhhheeeeeccCC-CCCChHHHHhccceeeeeeecchhc
Confidence 877 3 22688899996 8999999999999999999999885 777554 345677888888888
No 27
>KOG4341 consensus F-box protein containing LRR [General function prediction only]
Probab=98.72 E-value=3.6e-10 Score=100.09 Aligned_cols=256 Identities=17% Similarity=0.200 Sum_probs=170.0
Q ss_pred cccEEEecCCCccchhccccccchhccccccCCCCCcccEEEEccCcchhch--hhhccCCCCCcEEEeeccCCcCccc-
Q 018478 66 LLEELCISSCRSLTSIFSKNELSATLESLEVGNLPPSLKSLRVQGCSKLESI--AETLDNSTSLETIHIFYCENMKILP- 142 (355)
Q Consensus 66 ~L~~L~l~~~~~l~~~~~~n~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~--~~~~~~l~~L~~L~l~~~~~~~~~~- 142 (355)
.|+.|.+.+|.....- ... .....+|+++.|.+.+|..++.. -..-..|++|+++++..|..++...
T Consensus 139 ~lk~LSlrG~r~v~~s----slr------t~~~~CpnIehL~l~gc~~iTd~s~~sla~~C~~l~~l~L~~c~~iT~~~L 208 (483)
T KOG4341|consen 139 FLKELSLRGCRAVGDS----SLR------TFASNCPNIEHLALYGCKKITDSSLLSLARYCRKLRHLNLHSCSSITDVSL 208 (483)
T ss_pred ccccccccccccCCcc----hhh------HHhhhCCchhhhhhhcceeccHHHHHHHHHhcchhhhhhhcccchhHHHHH
Confidence 5899999998765543 000 12256789999999999877642 2223458999999999998887632
Q ss_pred -ccccCCCCCceEeccccCCCcC--CCCCCCCCCCcceEEEccccCcCcc--cccccCCCCCceEEEe-ecCcCCC----
Q 018478 143 -SGLHNLRQLQEISIEGCGNLES--FPEGGLPCAKLKEVVIRWCGRLEAL--PKGLHNLKSLQKLTIG-KGGLEED---- 212 (355)
Q Consensus 143 -~~~~~l~~L~~L~l~~~~~l~~--~~~~~~~~~~L~~L~l~~~~~~~~~--p~~l~~~~~L~~L~l~-~~~i~~~---- 212 (355)
.....+++|+++++++|+.+.. +-.....+.+++++...||...+.- -..-+.+.-+-++++. .+.+++.
T Consensus 209 k~la~gC~kL~~lNlSwc~qi~~~gv~~~~rG~~~l~~~~~kGC~e~~le~l~~~~~~~~~i~~lnl~~c~~lTD~~~~~ 288 (483)
T KOG4341|consen 209 KYLAEGCRKLKYLNLSWCPQISGNGVQALQRGCKELEKLSLKGCLELELEALLKAAAYCLEILKLNLQHCNQLTDEDLWL 288 (483)
T ss_pred HHHHHhhhhHHHhhhccCchhhcCcchHHhccchhhhhhhhcccccccHHHHHHHhccChHhhccchhhhccccchHHHH
Confidence 2334589999999999987765 1122344667888877887654321 1111333344444433 2333332
Q ss_pred --CCCCCccEEEecCCcchhhhhhhhcccCCCCCccceeEecccCCcccccCccccccCCCCCCCCccceEEeccCCCcc
Q 018478 213 --GLPTNLHSLDIRGNMEIWKSMIEWGQGFHRFSSLRELRIEGCDDDMVSFPPEDIRMGTTLPLPTSLTSLAIFSFPNLE 290 (355)
Q Consensus 213 --~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~l~ 290 (355)
.....|+.++.++|..+++.+...- -++.++|+.+.+.+ |.+++...... .+..-+.|+.+++..|..+.
T Consensus 289 i~~~c~~lq~l~~s~~t~~~d~~l~aL--g~~~~~L~~l~l~~-c~~fsd~~ft~-----l~rn~~~Le~l~~e~~~~~~ 360 (483)
T KOG4341|consen 289 IACGCHALQVLCYSSCTDITDEVLWAL--GQHCHNLQVLELSG-CQQFSDRGFTM-----LGRNCPHLERLDLEECGLIT 360 (483)
T ss_pred HhhhhhHhhhhcccCCCCCchHHHHHH--hcCCCceEEEeccc-cchhhhhhhhh-----hhcCChhhhhhcccccceeh
Confidence 2467889999999988776555433 56789999999999 87755433211 12455689999999876555
Q ss_pred cc--cccCCCCCCccEEeeCCCCCCcccCCCC------CCCCccEEEecCCchhhHh
Q 018478 291 RL--SSSIVDLQNLTSLYLVGCPKLKYFPEKG------LPSSLLELWIGGCPLIEEK 339 (355)
Q Consensus 291 ~l--~~~~~~~~~L~~L~l~~~~~l~~~~~~~------~~~~L~~L~l~~c~~l~~~ 339 (355)
.- ..--.+++.|+.+.++.|..+++-+-.. -...|+.+.+.+||.+++.
T Consensus 361 d~tL~sls~~C~~lr~lslshce~itD~gi~~l~~~~c~~~~l~~lEL~n~p~i~d~ 417 (483)
T KOG4341|consen 361 DGTLASLSRNCPRLRVLSLSHCELITDEGIRHLSSSSCSLEGLEVLELDNCPLITDA 417 (483)
T ss_pred hhhHhhhccCCchhccCChhhhhhhhhhhhhhhhhccccccccceeeecCCCCchHH
Confidence 32 2222789999999999997776652211 1478899999999988775
No 28
>COG4886 Leucine-rich repeat (LRR) protein [Function unknown]
Probab=98.64 E-value=3e-08 Score=92.29 Aligned_cols=170 Identities=21% Similarity=0.299 Sum_probs=77.3
Q ss_pred cccEEEEccCcchhchhhhccCCC-CCcEEEeeccCCcCcccccccCCCCCceEeccccCCCcCCCCCCCCCCCcceEEE
Q 018478 102 SLKSLRVQGCSKLESIAETLDNST-SLETIHIFYCENMKILPSGLHNLRQLQEISIEGCGNLESFPEGGLPCAKLKEVVI 180 (355)
Q Consensus 102 ~L~~L~l~~~~~~~~~~~~~~~l~-~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~l~~~~~~~~~~~~L~~L~l 180 (355)
.++.|++.++. +..+++...... +|+.|++++|. +..+|..++.+++|+.|++++| .+..+|...+..++|+.|++
T Consensus 117 ~l~~L~l~~n~-i~~i~~~~~~~~~nL~~L~l~~N~-i~~l~~~~~~l~~L~~L~l~~N-~l~~l~~~~~~~~~L~~L~l 193 (394)
T COG4886 117 NLTSLDLDNNN-ITDIPPLIGLLKSNLKELDLSDNK-IESLPSPLRNLPNLKNLDLSFN-DLSDLPKLLSNLSNLNNLDL 193 (394)
T ss_pred ceeEEecCCcc-cccCccccccchhhcccccccccc-hhhhhhhhhccccccccccCCc-hhhhhhhhhhhhhhhhheec
Confidence 45555555444 444444443332 55555555544 4444434445555555555554 34444443334445555555
Q ss_pred ccccCcCcccccccCCCCCceEEEeecCcCCCCCCCCccEEEecCCcchhhhhhhhcccCCCCCccceeEecccCCcccc
Q 018478 181 RWCGRLEALPKGLHNLKSLQKLTIGKGGLEEDGLPTNLHSLDIRGNMEIWKSMIEWGQGFHRFSSLRELRIEGCDDDMVS 260 (355)
Q Consensus 181 ~~~~~~~~~p~~l~~~~~L~~L~l~~~~i~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~ 260 (355)
++| .+..+|..+.... .|+++.+.+|........ +..+.++..+.+.+ +.+..
T Consensus 194 s~N-~i~~l~~~~~~~~-------------------~L~~l~~~~N~~~~~~~~-----~~~~~~l~~l~l~~--n~~~~ 246 (394)
T COG4886 194 SGN-KISDLPPEIELLS-------------------ALEELDLSNNSIIELLSS-----LSNLKNLSGLELSN--NKLED 246 (394)
T ss_pred cCC-ccccCchhhhhhh-------------------hhhhhhhcCCcceecchh-----hhhcccccccccCC--ceeee
Confidence 552 3444444333333 344455554432222111 33444444444433 33333
Q ss_pred cCccccccCCCCCCCCccceEEeccCCCcccccccCCCCCCccEEeeCCC
Q 018478 261 FPPEDIRMGTTLPLPTSLTSLAIFSFPNLERLSSSIVDLQNLTSLYLVGC 310 (355)
Q Consensus 261 ~~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~l~~~~~~~~~L~~L~l~~~ 310 (355)
++... ..++.++.|++++ +.+..++. +..+.++++|+++++
T Consensus 247 ~~~~~-------~~l~~l~~L~~s~-n~i~~i~~-~~~~~~l~~L~~s~n 287 (394)
T COG4886 247 LPESI-------GNLSNLETLDLSN-NQISSISS-LGSLTNLRELDLSGN 287 (394)
T ss_pred ccchh-------ccccccceecccc-cccccccc-ccccCccCEEeccCc
Confidence 22222 2344455555555 45555444 455555555555554
No 29
>PRK15386 type III secretion protein GogB; Provisional
Probab=98.62 E-value=3.2e-07 Score=83.40 Aligned_cols=90 Identities=29% Similarity=0.543 Sum_probs=42.8
Q ss_pred CCCCcEEEeeccCCcCcccccccCCCCCceEeccccCCCcCCCCCCCCCCCcceEEEccccCcCcccccccCCCCCceEE
Q 018478 124 STSLETIHIFYCENMKILPSGLHNLRQLQEISIEGCGNLESFPEGGLPCAKLKEVVIRWCGRLEALPKGLHNLKSLQKLT 203 (355)
Q Consensus 124 l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~l~~~~~~~~~~~~L~~L~l~~~~~~~~~p~~l~~~~~L~~L~ 203 (355)
+.+++.|++++|. +..+|. + ..+|+.|.+.+|..+..+|..+. ++|+.|.+.+|..+..+|. +|+.|.
T Consensus 51 ~~~l~~L~Is~c~-L~sLP~-L--P~sLtsL~Lsnc~nLtsLP~~LP--~nLe~L~Ls~Cs~L~sLP~------sLe~L~ 118 (426)
T PRK15386 51 ARASGRLYIKDCD-IESLPV-L--PNELTEITIENCNNLTTLPGSIP--EGLEKLTVCHCPEISGLPE------SVRSLE 118 (426)
T ss_pred hcCCCEEEeCCCC-CcccCC-C--CCCCcEEEccCCCCcccCCchhh--hhhhheEccCccccccccc------ccceEE
Confidence 4555555555553 555541 1 22455566655555555554332 3566666666544444443 344444
Q ss_pred EeecCcCC-CCCCCCccEEEecC
Q 018478 204 IGKGGLEE-DGLPTNLHSLDIRG 225 (355)
Q Consensus 204 l~~~~i~~-~~~~~~L~~L~l~~ 225 (355)
+....... ...|++|+.|.+.+
T Consensus 119 L~~n~~~~L~~LPssLk~L~I~~ 141 (426)
T PRK15386 119 IKGSATDSIKNVPNGLTSLSINS 141 (426)
T ss_pred eCCCCCcccccCcchHhheeccc
Confidence 43111111 12445666666543
No 30
>PRK15386 type III secretion protein GogB; Provisional
Probab=98.62 E-value=1.6e-07 Score=85.30 Aligned_cols=132 Identities=23% Similarity=0.435 Sum_probs=77.1
Q ss_pred CCCccEEeecccccCcccccCccCCCcceEecccCccccccccccCcCCCCCCCccccccccccEEEecCCCccchhccc
Q 018478 5 NSSLEILEIWSCRSLTYLAAVQLPRSLKRLDIQCCSNIRTLTMEEGIQSSSSSSSRRYTSYLLEELCISSCRSLTSIFSK 84 (355)
Q Consensus 5 ~~~L~~L~l~~~~~l~~l~~~~~~~~L~~L~l~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~~~~~ 84 (355)
+++++.|++++| .++.+| .+|++|++|.+.+|+.++.+|... .++|+.|.+.+|..+..+
T Consensus 51 ~~~l~~L~Is~c-~L~sLP--~LP~sLtsL~Lsnc~nLtsLP~~L--------------P~nLe~L~Ls~Cs~L~sL--- 110 (426)
T PRK15386 51 ARASGRLYIKDC-DIESLP--VLPNELTEITIENCNNLTTLPGSI--------------PEGLEKLTVCHCPEISGL--- 110 (426)
T ss_pred hcCCCEEEeCCC-CCcccC--CCCCCCcEEEccCCCCcccCCchh--------------hhhhhheEccCccccccc---
Confidence 467788888877 677776 466778888888888777777544 457888888877655444
Q ss_pred cccchhccccccCCCCCcccEEEEccCc--chhchhhhccCCCCCcEEEeeccCCc--CcccccccCCCCCceEeccccC
Q 018478 85 NELSATLESLEVGNLPPSLKSLRVQGCS--KLESIAETLDNSTSLETIHIFYCENM--KILPSGLHNLRQLQEISIEGCG 160 (355)
Q Consensus 85 n~~~~~~~~~~~~~~~~~L~~L~l~~~~--~~~~~~~~~~~l~~L~~L~l~~~~~~--~~~~~~~~~l~~L~~L~l~~~~ 160 (355)
+++|+.|++.++. .+..+| ++|+.|.+.++... ..++.. -.++|+.|.+.+|.
T Consensus 111 ---------------P~sLe~L~L~~n~~~~L~~LP------ssLk~L~I~~~n~~~~~~lp~~--LPsSLk~L~Is~c~ 167 (426)
T PRK15386 111 ---------------PESVRSLEIKGSATDSIKNVP------NGLTSLSINSYNPENQARIDNL--ISPSLKTLSLTGCS 167 (426)
T ss_pred ---------------ccccceEEeCCCCCcccccCc------chHhheeccccccccccccccc--cCCcccEEEecCCC
Confidence 3567777776433 122333 34556655332211 111111 12457777777664
Q ss_pred CCcCCCCCCCCCCCcceEEEcc
Q 018478 161 NLESFPEGGLPCAKLKEVVIRW 182 (355)
Q Consensus 161 ~l~~~~~~~~~~~~L~~L~l~~ 182 (355)
.+ .+|..+. .+|+.|+++.
T Consensus 168 ~i-~LP~~LP--~SLk~L~ls~ 186 (426)
T PRK15386 168 NI-ILPEKLP--ESLQSITLHI 186 (426)
T ss_pred cc-cCccccc--ccCcEEEecc
Confidence 33 3443333 3677777655
No 31
>PF14580 LRR_9: Leucine-rich repeat; PDB: 2JE1_D 2JE0_A 2JQD_A.
Probab=98.55 E-value=4.9e-08 Score=79.01 Aligned_cols=122 Identities=20% Similarity=0.224 Sum_probs=38.5
Q ss_pred cccccEEEecCCCccchhccccccchhccccccC-CCCCcccEEEEccCcchhchhhhccCCCCCcEEEeeccCCcCccc
Q 018478 64 SYLLEELCISSCRSLTSIFSKNELSATLESLEVG-NLPPSLKSLRVQGCSKLESIAETLDNSTSLETIHIFYCENMKILP 142 (355)
Q Consensus 64 ~~~L~~L~l~~~~~l~~~~~~n~~~~~~~~~~~~-~~~~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~ 142 (355)
..++++|+++++ .++.+ ..- ..+.+|+.|++++|. ++.++ ++..+++|+.|++++|. ++.+.
T Consensus 18 ~~~~~~L~L~~n-~I~~I-------------e~L~~~l~~L~~L~Ls~N~-I~~l~-~l~~L~~L~~L~L~~N~-I~~i~ 80 (175)
T PF14580_consen 18 PVKLRELNLRGN-QISTI-------------ENLGATLDKLEVLDLSNNQ-ITKLE-GLPGLPRLKTLDLSNNR-ISSIS 80 (175)
T ss_dssp --------------------------------S--TT-TT--EEE-TTS---S--T-T----TT--EEE--SS----S-C
T ss_pred cccccccccccc-ccccc-------------cchhhhhcCCCEEECCCCC-Ccccc-CccChhhhhhcccCCCC-CCccc
Confidence 445677777664 33433 222 234567777777776 65553 45557777777777766 55554
Q ss_pred ccc-cCCCCCceEeccccCCCcCCCC--CCCCCCCcceEEEccccCcCcccc----cccCCCCCceEEE
Q 018478 143 SGL-HNLRQLQEISIEGCGNLESFPE--GGLPCAKLKEVVIRWCGRLEALPK----GLHNLKSLQKLTI 204 (355)
Q Consensus 143 ~~~-~~l~~L~~L~l~~~~~l~~~~~--~~~~~~~L~~L~l~~~~~~~~~p~----~l~~~~~L~~L~l 204 (355)
..+ ..+++|+.|++++| .+..+.+ .+..+++|+.|++.+|+.... +. .+..+|+|+.|+-
T Consensus 81 ~~l~~~lp~L~~L~L~~N-~I~~l~~l~~L~~l~~L~~L~L~~NPv~~~-~~YR~~vi~~lP~Lk~LD~ 147 (175)
T PF14580_consen 81 EGLDKNLPNLQELYLSNN-KISDLNELEPLSSLPKLRVLSLEGNPVCEK-KNYRLFVIYKLPSLKVLDG 147 (175)
T ss_dssp HHHHHH-TT--EEE-TTS----SCCCCGGGGG-TT--EEE-TT-GGGGS-TTHHHHHHHH-TT-SEETT
T ss_pred cchHHhCCcCCEEECcCC-cCCChHHhHHHHcCCCcceeeccCCcccch-hhHHHHHHHHcChhheeCC
Confidence 333 24677777777765 4544432 234467777777777653321 21 3456666666644
No 32
>PF14580 LRR_9: Leucine-rich repeat; PDB: 2JE1_D 2JE0_A 2JQD_A.
Probab=98.49 E-value=6.7e-08 Score=78.25 Aligned_cols=129 Identities=22% Similarity=0.265 Sum_probs=36.3
Q ss_pred CcccEEEEccCcchhchhhhcc-CCCCCcEEEeeccCCcCcccccccCCCCCceEeccccCCCcCCCCCCC-CCCCcceE
Q 018478 101 PSLKSLRVQGCSKLESIAETLD-NSTSLETIHIFYCENMKILPSGLHNLRQLQEISIEGCGNLESFPEGGL-PCAKLKEV 178 (355)
Q Consensus 101 ~~L~~L~l~~~~~~~~~~~~~~-~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~l~~~~~~~~-~~~~L~~L 178 (355)
.+++.|++.+|. ++.+. .++ .+.+|+.|++++|. +..+. .+..++.|+.|++++| .++.+...+. .+++|++|
T Consensus 19 ~~~~~L~L~~n~-I~~Ie-~L~~~l~~L~~L~Ls~N~-I~~l~-~l~~L~~L~~L~L~~N-~I~~i~~~l~~~lp~L~~L 93 (175)
T PF14580_consen 19 VKLRELNLRGNQ-ISTIE-NLGATLDKLEVLDLSNNQ-ITKLE-GLPGLPRLKTLDLSNN-RISSISEGLDKNLPNLQEL 93 (175)
T ss_dssp -------------------S--TT-TT--EEE-TTS---S--T-T----TT--EEE--SS----S-CHHHHHH-TT--EE
T ss_pred cccccccccccc-ccccc-chhhhhcCCCEEECCCCC-Ccccc-CccChhhhhhcccCCC-CCCccccchHHhCCcCCEE
Confidence 456666666665 55443 233 35666666666665 54443 3555666666666665 4444433221 35566666
Q ss_pred EEccccCcCcccccccCCCCCceEEEeecCcCCCCCCCCccEEEecCCcchhhhhhhhcccCCCCCccceeEecc
Q 018478 179 VIRWCGRLEALPKGLHNLKSLQKLTIGKGGLEEDGLPTNLHSLDIRGNMEIWKSMIEWGQGFHRFSSLRELRIEG 253 (355)
Q Consensus 179 ~l~~~~~~~~~p~~l~~~~~L~~L~l~~~~i~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~l~~L~~L~l~~ 253 (355)
++++| .+..+.+ + .....+++|+.|++.+|+...... .....+..+|+|+.||-..
T Consensus 94 ~L~~N-~I~~l~~-l----------------~~L~~l~~L~~L~L~~NPv~~~~~-YR~~vi~~lP~Lk~LD~~~ 149 (175)
T PF14580_consen 94 YLSNN-KISDLNE-L----------------EPLSSLPKLRVLSLEGNPVCEKKN-YRLFVIYKLPSLKVLDGQD 149 (175)
T ss_dssp E-TTS----SCCC-C----------------GGGGG-TT--EEE-TT-GGGGSTT-HHHHHHHH-TT-SEETTEE
T ss_pred ECcCC-cCCChHH-h----------------HHHHcCCCcceeeccCCcccchhh-HHHHHHHHcChhheeCCEE
Confidence 66653 2332211 1 111224566666777776443211 0011145677888877655
No 33
>COG4886 Leucine-rich repeat (LRR) protein [Function unknown]
Probab=98.48 E-value=8.8e-08 Score=89.19 Aligned_cols=166 Identities=26% Similarity=0.352 Sum_probs=120.2
Q ss_pred cccccEEEecCCCccchhccccccchhccccccC-CCCC-cccEEEEccCcchhchhhhccCCCCCcEEEeeccCCcCcc
Q 018478 64 SYLLEELCISSCRSLTSIFSKNELSATLESLEVG-NLPP-SLKSLRVQGCSKLESIAETLDNSTSLETIHIFYCENMKIL 141 (355)
Q Consensus 64 ~~~L~~L~l~~~~~l~~~~~~n~~~~~~~~~~~~-~~~~-~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~ 141 (355)
.+.++.+.+.+. .++.+ +.. ..+. +|+.|+++++. +..+|..+..+++|+.|++++|+ +..+
T Consensus 115 ~~~l~~L~l~~n-~i~~i-------------~~~~~~~~~nL~~L~l~~N~-i~~l~~~~~~l~~L~~L~l~~N~-l~~l 178 (394)
T COG4886 115 LTNLTSLDLDNN-NITDI-------------PPLIGLLKSNLKELDLSDNK-IESLPSPLRNLPNLKNLDLSFND-LSDL 178 (394)
T ss_pred ccceeEEecCCc-ccccC-------------ccccccchhhcccccccccc-hhhhhhhhhccccccccccCCch-hhhh
Confidence 456666766653 44444 443 4443 89999999988 88887778889999999999988 8888
Q ss_pred cccccCCCCCceEeccccCCCcCCCCCCCCCCCcceEEEccccCcCcccccccCCCCCceEEEeecCc----CCCCCCCC
Q 018478 142 PSGLHNLRQLQEISIEGCGNLESFPEGGLPCAKLKEVVIRWCGRLEALPKGLHNLKSLQKLTIGKGGL----EEDGLPTN 217 (355)
Q Consensus 142 ~~~~~~l~~L~~L~l~~~~~l~~~~~~~~~~~~L~~L~l~~~~~~~~~p~~l~~~~~L~~L~l~~~~i----~~~~~~~~ 217 (355)
+...+..++|+.|+++++ .+..+|........|+++.+++|. ....+..+..+.++..+.+....+ ...+.+++
T Consensus 179 ~~~~~~~~~L~~L~ls~N-~i~~l~~~~~~~~~L~~l~~~~N~-~~~~~~~~~~~~~l~~l~l~~n~~~~~~~~~~~l~~ 256 (394)
T COG4886 179 PKLLSNLSNLNNLDLSGN-KISDLPPEIELLSALEELDLSNNS-IIELLSSLSNLKNLSGLELSNNKLEDLPESIGNLSN 256 (394)
T ss_pred hhhhhhhhhhhheeccCC-ccccCchhhhhhhhhhhhhhcCCc-ceecchhhhhcccccccccCCceeeeccchhccccc
Confidence 876668999999999997 788888765455679999999864 344456777777777777653222 23455667
Q ss_pred ccEEEecCCcchhhhhhhhcccCCCCCccceeEecc
Q 018478 218 LHSLDIRGNMEIWKSMIEWGQGFHRFSSLRELRIEG 253 (355)
Q Consensus 218 L~~L~l~~~~~~~~~~~~~~~~~~~l~~L~~L~l~~ 253 (355)
++.|++++|... .+.. +..+.+++.|++++
T Consensus 257 l~~L~~s~n~i~-~i~~-----~~~~~~l~~L~~s~ 286 (394)
T COG4886 257 LETLDLSNNQIS-SISS-----LGSLTNLRELDLSG 286 (394)
T ss_pred cceecccccccc-cccc-----ccccCccCEEeccC
Confidence 888888776532 2322 55677788888877
No 34
>KOG3207 consensus Beta-tubulin folding cofactor E [Posttranslational modification, protein turnover, chaperones]
Probab=98.48 E-value=4e-08 Score=87.83 Aligned_cols=149 Identities=19% Similarity=0.204 Sum_probs=88.1
Q ss_pred CCCcceEEEccccCc--CcccccccCCCCCceEEEeecCcCC------CCCCCCccEEEecCCcchhhhhhhhcccCCCC
Q 018478 172 CAKLKEVVIRWCGRL--EALPKGLHNLKSLQKLTIGKGGLEE------DGLPTNLHSLDIRGNMEIWKSMIEWGQGFHRF 243 (355)
Q Consensus 172 ~~~L~~L~l~~~~~~--~~~p~~l~~~~~L~~L~l~~~~i~~------~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~l 243 (355)
|++++.|+++.|=.- ..+.....++++|+.|.++.+.+.. ....++|+.|.+.+|.... ....|. +..+
T Consensus 145 ~~~v~~LdLS~NL~~nw~~v~~i~eqLp~Le~LNls~Nrl~~~~~s~~~~~l~~lK~L~l~~CGls~-k~V~~~--~~~f 221 (505)
T KOG3207|consen 145 LPNVRDLDLSRNLFHNWFPVLKIAEQLPSLENLNLSSNRLSNFISSNTTLLLSHLKQLVLNSCGLSW-KDVQWI--LLTF 221 (505)
T ss_pred CCcceeecchhhhHHhHHHHHHHHHhcccchhcccccccccCCccccchhhhhhhheEEeccCCCCH-HHHHHH--HHhC
Confidence 455555555553111 1111233455566666655222211 1245788888888887443 333344 6788
Q ss_pred CccceeEecccCCcc--cccCccccccCCCCCCCCccceEEeccCCCccccc--ccCCCCCCccEEeeCCCCCCcccCC-
Q 018478 244 SSLRELRIEGCDDDM--VSFPPEDIRMGTTLPLPTSLTSLAIFSFPNLERLS--SSIVDLQNLTSLYLVGCPKLKYFPE- 318 (355)
Q Consensus 244 ~~L~~L~l~~~~~~~--~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~l~--~~~~~~~~L~~L~l~~~~~l~~~~~- 318 (355)
|+|+.|++.. +..+ ...+. ..++.|++|++++ +++...+ .....+|.|+.|.++.| .+.++..
T Consensus 222 Psl~~L~L~~-N~~~~~~~~~~---------~i~~~L~~LdLs~-N~li~~~~~~~~~~l~~L~~Lnls~t-gi~si~~~ 289 (505)
T KOG3207|consen 222 PSLEVLYLEA-NEIILIKATST---------KILQTLQELDLSN-NNLIDFDQGYKVGTLPGLNQLNLSST-GIASIAEP 289 (505)
T ss_pred CcHHHhhhhc-ccccceecchh---------hhhhHHhhccccC-Ccccccccccccccccchhhhhcccc-CcchhcCC
Confidence 8999999988 3222 22222 3567888999998 4444444 23467888888888887 6776532
Q ss_pred -C------CCCCCccEEEecCCch
Q 018478 319 -K------GLPSSLLELWIGGCPL 335 (355)
Q Consensus 319 -~------~~~~~L~~L~l~~c~~ 335 (355)
. ..+++|++|++..++-
T Consensus 290 d~~s~~kt~~f~kL~~L~i~~N~I 313 (505)
T KOG3207|consen 290 DVESLDKTHTFPKLEYLNISENNI 313 (505)
T ss_pred CccchhhhcccccceeeecccCcc
Confidence 1 1268888888877653
No 35
>KOG1259 consensus Nischarin, modulator of integrin alpha5 subunit action [Signal transduction mechanisms; Cytoskeleton]
Probab=98.47 E-value=3.8e-08 Score=84.07 Aligned_cols=99 Identities=23% Similarity=0.331 Sum_probs=61.8
Q ss_pred CcccEEEEccCcchhchhhhccCCCCCcEEEeeccCCcCcccccccCCCCCceEeccccCCCcCCCCCCCCCCCcceEEE
Q 018478 101 PSLKSLRVQGCSKLESIAETLDNSTSLETIHIFYCENMKILPSGLHNLRQLQEISIEGCGNLESFPEGGLPCAKLKEVVI 180 (355)
Q Consensus 101 ~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~l~~~~~~~~~~~~L~~L~l 180 (355)
..|+.+|+++|. ++.+..++.-.|+++.|++++|. +..+- .++.+++|+.|++++| .+..+.-.-..+-|+++|.+
T Consensus 284 q~LtelDLS~N~-I~~iDESvKL~Pkir~L~lS~N~-i~~v~-nLa~L~~L~~LDLS~N-~Ls~~~Gwh~KLGNIKtL~L 359 (490)
T KOG1259|consen 284 QELTELDLSGNL-ITQIDESVKLAPKLRRLILSQNR-IRTVQ-NLAELPQLQLLDLSGN-LLAECVGWHLKLGNIKTLKL 359 (490)
T ss_pred hhhhhccccccc-hhhhhhhhhhccceeEEeccccc-eeeeh-hhhhcccceEeecccc-hhHhhhhhHhhhcCEeeeeh
Confidence 357778888776 77676666667788888888777 44442 3666777888888775 44444333334557777777
Q ss_pred ccccCcCcccccccCCCCCceEEEe
Q 018478 181 RWCGRLEALPKGLHNLKSLQKLTIG 205 (355)
Q Consensus 181 ~~~~~~~~~p~~l~~~~~L~~L~l~ 205 (355)
++| .++++ .+++.+.+|..|++.
T Consensus 360 a~N-~iE~L-SGL~KLYSLvnLDl~ 382 (490)
T KOG1259|consen 360 AQN-KIETL-SGLRKLYSLVNLDLS 382 (490)
T ss_pred hhh-hHhhh-hhhHhhhhheecccc
Confidence 774 34443 345555555555444
No 36
>KOG1259 consensus Nischarin, modulator of integrin alpha5 subunit action [Signal transduction mechanisms; Cytoskeleton]
Probab=98.41 E-value=9.1e-08 Score=81.76 Aligned_cols=227 Identities=19% Similarity=0.222 Sum_probs=138.4
Q ss_pred ccccccEEEecCCCccchhccccccchhccccccC-CCCCcccEEEEccCcchhchhhhccCCCCCcEEEeeccCCcCcc
Q 018478 63 TSYLLEELCISSCRSLTSIFSKNELSATLESLEVG-NLPPSLKSLRVQGCSKLESIAETLDNSTSLETIHIFYCENMKIL 141 (355)
Q Consensus 63 ~~~~L~~L~l~~~~~l~~~~~~n~~~~~~~~~~~~-~~~~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~ 141 (355)
.+.+|..|..++.. .-+...++....- ++. +.+.+|+.+.++.|+ .+.+-.....=|.|+.+.+.... ++..
T Consensus 180 f~~~l~~l~vs~~~---~p~~~sni~~~~l--~f~l~~f~~l~~~~~s~~~-~~~i~~~~~~kptl~t~~v~~s~-~~~~ 252 (490)
T KOG1259|consen 180 FCTQLVALVVTPVK---DPIDRSNIIPNRL--SFNLNAFRNLKTLKFSALS-TENIVDIELLKPTLQTICVHNTT-IQDV 252 (490)
T ss_pred hhhheeEEEecCCC---CCCcccccccccc--ccchHHhhhhheeeeeccc-hhheeceeecCchhheeeeeccc-cccc
Confidence 36678888776532 1112222211110 222 455788888888887 44443333334778888777643 3333
Q ss_pred cccccCCCCCceEeccccCCCcCCC--CCCCCCCCcceEEEccccCcCcccccccCCCCCceEEEeecCcC---CCCCCC
Q 018478 142 PSGLHNLRQLQEISIEGCGNLESFP--EGGLPCAKLKEVVIRWCGRLEALPKGLHNLKSLQKLTIGKGGLE---EDGLPT 216 (355)
Q Consensus 142 ~~~~~~l~~L~~L~l~~~~~l~~~~--~~~~~~~~L~~L~l~~~~~~~~~p~~l~~~~~L~~L~l~~~~i~---~~~~~~ 216 (355)
|. +--...+.......- ....-| ..+-.+..|+++++++| .++.+.++..-.+.++.|+++.+.+. ....++
T Consensus 253 ~~-l~pe~~~~D~~~~E~-~t~~G~~~~~~dTWq~LtelDLS~N-~I~~iDESvKL~Pkir~L~lS~N~i~~v~nLa~L~ 329 (490)
T KOG1259|consen 253 PS-LLPETILADPSGSEP-STSNGSALVSADTWQELTELDLSGN-LITQIDESVKLAPKLRRLILSQNRIRTVQNLAELP 329 (490)
T ss_pred cc-ccchhhhcCccCCCC-CccCCceEEecchHhhhhhcccccc-chhhhhhhhhhccceeEEeccccceeeehhhhhcc
Confidence 21 111223333322221 111111 22333678889999984 56666677788889999999855544 445678
Q ss_pred CccEEEecCCcchhhhhhhhcccCCCCCccceeEecccCCcccccCccccccCCCCCCCCccceEEeccCCCcccccc--
Q 018478 217 NLHSLDIRGNMEIWKSMIEWGQGFHRFSSLRELRIEGCDDDMVSFPPEDIRMGTTLPLPTSLTSLAIFSFPNLERLSS-- 294 (355)
Q Consensus 217 ~L~~L~l~~~~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~l~~-- 294 (355)
+|+.||+++|.. ..... | -..+.++++|.+++ +.++++..- ..+-+|..||+++ ++++.+.+
T Consensus 330 ~L~~LDLS~N~L-s~~~G-w---h~KLGNIKtL~La~--N~iE~LSGL--------~KLYSLvnLDl~~-N~Ie~ldeV~ 393 (490)
T KOG1259|consen 330 QLQLLDLSGNLL-AECVG-W---HLKLGNIKTLKLAQ--NKIETLSGL--------RKLYSLVNLDLSS-NQIEELDEVN 393 (490)
T ss_pred cceEeecccchh-Hhhhh-h---HhhhcCEeeeehhh--hhHhhhhhh--------Hhhhhheeccccc-cchhhHHHhc
Confidence 999999998763 32221 2 24578899999998 667666532 2566899999999 67776643
Q ss_pred cCCCCCCccEEeeCCCCCCccc
Q 018478 295 SIVDLQNLTSLYLVGCPKLKYF 316 (355)
Q Consensus 295 ~~~~~~~L~~L~l~~~~~l~~~ 316 (355)
.++++|.|+++.+.+|| +..+
T Consensus 394 ~IG~LPCLE~l~L~~NP-l~~~ 414 (490)
T KOG1259|consen 394 HIGNLPCLETLRLTGNP-LAGS 414 (490)
T ss_pred ccccccHHHHHhhcCCC-cccc
Confidence 56889999999999985 4443
No 37
>KOG0532 consensus Leucine-rich repeat (LRR) protein, contains calponin homology domain [Cytoskeleton]
Probab=98.40 E-value=9.2e-09 Score=94.71 Aligned_cols=152 Identities=26% Similarity=0.322 Sum_probs=110.4
Q ss_pred CCcccEEEEccCcchhchhhhccCCCCCcEEEeeccCCcCcccccccCCCCCceEeccccCCCcCCCCCCCCCCCcceEE
Q 018478 100 PPSLKSLRVQGCSKLESIAETLDNSTSLETIHIFYCENMKILPSGLHNLRQLQEISIEGCGNLESFPEGGLPCAKLKEVV 179 (355)
Q Consensus 100 ~~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~l~~~~~~~~~~~~L~~L~ 179 (355)
|..|+.+.++.|. +..+|..+..+..|+.|+++.|. +..+|..+..++ |+.|.+++| +++.+|+.++....|..|+
T Consensus 97 f~~Le~liLy~n~-~r~ip~~i~~L~~lt~l~ls~Nq-lS~lp~~lC~lp-Lkvli~sNN-kl~~lp~~ig~~~tl~~ld 172 (722)
T KOG0532|consen 97 FVSLESLILYHNC-IRTIPEAICNLEALTFLDLSSNQ-LSHLPDGLCDLP-LKVLIVSNN-KLTSLPEEIGLLPTLAHLD 172 (722)
T ss_pred HHHHHHHHHHhcc-ceecchhhhhhhHHHHhhhccch-hhcCChhhhcCc-ceeEEEecC-ccccCCcccccchhHHHhh
Confidence 3568888888887 77888888888999999999877 888888888877 888888876 7888888888778888898
Q ss_pred EccccCcCcccccccCCCCCceEEEe---ecCcCCCCCCCCccEEEecCCcchhhhhhhhcccCCCCCccceeEecccCC
Q 018478 180 IRWCGRLEALPKGLHNLKSLQKLTIG---KGGLEEDGLPTNLHSLDIRGNMEIWKSMIEWGQGFHRFSSLRELRIEGCDD 256 (355)
Q Consensus 180 l~~~~~~~~~p~~l~~~~~L~~L~l~---~~~i~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~ 256 (355)
.+.| .+..+|..++.+.+|+.|.+. ...+|..-..-.|..||++.|+ +..++.+ |..|+.|++|-+.+ +
T Consensus 173 ~s~n-ei~slpsql~~l~slr~l~vrRn~l~~lp~El~~LpLi~lDfScNk-is~iPv~----fr~m~~Lq~l~Len--N 244 (722)
T KOG0532|consen 173 VSKN-EIQSLPSQLGYLTSLRDLNVRRNHLEDLPEELCSLPLIRLDFSCNK-ISYLPVD----FRKMRHLQVLQLEN--N 244 (722)
T ss_pred hhhh-hhhhchHHhhhHHHHHHHHHhhhhhhhCCHHHhCCceeeeecccCc-eeecchh----hhhhhhheeeeecc--C
Confidence 8885 466677788888888888776 2333332223456677777655 3344443 56777777777765 5
Q ss_pred cccccCc
Q 018478 257 DMVSFPP 263 (355)
Q Consensus 257 ~~~~~~~ 263 (355)
.+++=|+
T Consensus 245 PLqSPPA 251 (722)
T KOG0532|consen 245 PLQSPPA 251 (722)
T ss_pred CCCCChH
Confidence 5554444
No 38
>KOG3207 consensus Beta-tubulin folding cofactor E [Posttranslational modification, protein turnover, chaperones]
Probab=98.40 E-value=4.9e-08 Score=87.26 Aligned_cols=91 Identities=20% Similarity=0.170 Sum_probs=46.8
Q ss_pred CCCCccEEEecCCcchhhhhhhhcccCCCCCccceeEecccCCcccccCccccccCCCCCCCCccceEEeccCCCccccc
Q 018478 214 LPTNLHSLDIRGNMEIWKSMIEWGQGFHRFSSLRELRIEGCDDDMVSFPPEDIRMGTTLPLPTSLTSLAIFSFPNLERLS 293 (355)
Q Consensus 214 ~~~~L~~L~l~~~~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~l~ 293 (355)
.+..|+.|++++|..++..... . ...++.|+.|+++. .++.++..-...-......+++|+.|.+.. +++..++
T Consensus 244 i~~~L~~LdLs~N~li~~~~~~-~--~~~l~~L~~Lnls~--tgi~si~~~d~~s~~kt~~f~kL~~L~i~~-N~I~~w~ 317 (505)
T KOG3207|consen 244 ILQTLQELDLSNNNLIDFDQGY-K--VGTLPGLNQLNLSS--TGIASIAEPDVESLDKTHTFPKLEYLNISE-NNIRDWR 317 (505)
T ss_pred hhhHHhhccccCCccccccccc-c--cccccchhhhhccc--cCcchhcCCCccchhhhcccccceeeeccc-Ccccccc
Confidence 3456677777777655432111 1 55667777777776 333332210100111123556788888887 5555554
Q ss_pred c--cCCCCCCccEEeeCCC
Q 018478 294 S--SIVDLQNLTSLYLVGC 310 (355)
Q Consensus 294 ~--~~~~~~~L~~L~l~~~ 310 (355)
. .+..+++|++|.+..+
T Consensus 318 sl~~l~~l~nlk~l~~~~n 336 (505)
T KOG3207|consen 318 SLNHLRTLENLKHLRITLN 336 (505)
T ss_pred ccchhhccchhhhhhcccc
Confidence 3 2344556666655443
No 39
>KOG2120 consensus SCF ubiquitin ligase, Skp2 component [Posttranslational modification, protein turnover, chaperones]
Probab=98.23 E-value=2.6e-08 Score=84.89 Aligned_cols=180 Identities=13% Similarity=0.180 Sum_probs=86.8
Q ss_pred cccEEEEccCcchh--chhhhccCCCCCcEEEeeccCCcCcccccccCCCCCceEeccccCCCcCCC--CCCCCCCCcce
Q 018478 102 SLKSLRVQGCSKLE--SIAETLDNSTSLETIHIFYCENMKILPSGLHNLRQLQEISIEGCGNLESFP--EGGLPCAKLKE 177 (355)
Q Consensus 102 ~L~~L~l~~~~~~~--~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~l~~~~--~~~~~~~~L~~ 177 (355)
.|+.+|++... ++ .+...++.|.+|+.|.+.++..-+.+...++.-.+|+.++++.|..+++.. -.+.+|+.|..
T Consensus 186 Rlq~lDLS~s~-it~stl~~iLs~C~kLk~lSlEg~~LdD~I~~~iAkN~~L~~lnlsm~sG~t~n~~~ll~~scs~L~~ 264 (419)
T KOG2120|consen 186 RLQHLDLSNSV-ITVSTLHGILSQCSKLKNLSLEGLRLDDPIVNTIAKNSNLVRLNLSMCSGFTENALQLLLSSCSRLDE 264 (419)
T ss_pred hhHHhhcchhh-eeHHHHHHHHHHHHhhhhccccccccCcHHHHHHhccccceeeccccccccchhHHHHHHHhhhhHhh
Confidence 36666666543 32 233344556666666666655333344455555666666666665555433 12344566666
Q ss_pred EEEccccCcCcccc-cccCCCCCceEEEeecCcCCCCCCCCccEEEecCCcchhhh-hhhhcccCCCCCccceeEecccC
Q 018478 178 VVIRWCGRLEALPK-GLHNLKSLQKLTIGKGGLEEDGLPTNLHSLDIRGNMEIWKS-MIEWGQGFHRFSSLRELRIEGCD 255 (355)
Q Consensus 178 L~l~~~~~~~~~p~-~l~~~~~L~~L~l~~~~i~~~~~~~~L~~L~l~~~~~~~~~-~~~~~~~~~~l~~L~~L~l~~~~ 255 (355)
|.+++|...+..-. .+ ....++|+.|+++|+...-.. ..+.. ...+++|.+||++. |
T Consensus 265 LNlsWc~l~~~~Vtv~V------------------~hise~l~~LNlsG~rrnl~~sh~~tL--~~rcp~l~~LDLSD-~ 323 (419)
T KOG2120|consen 265 LNLSWCFLFTEKVTVAV------------------AHISETLTQLNLSGYRRNLQKSHLSTL--VRRCPNLVHLDLSD-S 323 (419)
T ss_pred cCchHhhccchhhhHHH------------------hhhchhhhhhhhhhhHhhhhhhHHHHH--HHhCCceeeecccc-c
Confidence 66666543221100 01 112245555566655422111 11111 34556666666665 4
Q ss_pred Ccccc-cCccccccCCCCCCCCccceEEeccCCCcc-cccccCCCCCCccEEeeCCC
Q 018478 256 DDMVS-FPPEDIRMGTTLPLPTSLTSLAIFSFPNLE-RLSSSIVDLQNLTSLYLVGC 310 (355)
Q Consensus 256 ~~~~~-~~~~~~~~~~~~~~~~~L~~L~l~~~~~l~-~l~~~~~~~~~L~~L~l~~~ 310 (355)
..++. ...++ ..++.|++|.++.|..+. ..-..+.+.|.|.+|++.+|
T Consensus 324 v~l~~~~~~~~-------~kf~~L~~lSlsRCY~i~p~~~~~l~s~psl~yLdv~g~ 373 (419)
T KOG2120|consen 324 VMLKNDCFQEF-------FKFNYLQHLSLSRCYDIIPETLLELNSKPSLVYLDVFGC 373 (419)
T ss_pred cccCchHHHHH-------HhcchheeeehhhhcCCChHHeeeeccCcceEEEEeccc
Confidence 43321 11122 234556666666654433 11112355666666666665
No 40
>PF13855 LRR_8: Leucine rich repeat; PDB: 2O6S_A 3A79_B 3RFS_A 3G39_A 3VQ2_A 3VQ1_B 2Z64_A 2Z66_C 3FXI_A 2Z63_A ....
Probab=98.19 E-value=3e-06 Score=56.19 Aligned_cols=57 Identities=23% Similarity=0.414 Sum_probs=26.3
Q ss_pred ccceeEecccCCcccccCccccccCCCCCCCCccceEEeccCCCcccccc-cCCCCCCccEEeeCCC
Q 018478 245 SLRELRIEGCDDDMVSFPPEDIRMGTTLPLPTSLTSLAIFSFPNLERLSS-SIVDLQNLTSLYLVGC 310 (355)
Q Consensus 245 ~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~l~~-~~~~~~~L~~L~l~~~ 310 (355)
+|++|++++ +.+..++.+.+ ...++|++|++++ +.++.++. .+.++++|++|++++|
T Consensus 2 ~L~~L~l~~--n~l~~i~~~~f------~~l~~L~~L~l~~-N~l~~i~~~~f~~l~~L~~L~l~~N 59 (61)
T PF13855_consen 2 NLESLDLSN--NKLTEIPPDSF------SNLPNLETLDLSN-NNLTSIPPDAFSNLPNLRYLDLSNN 59 (61)
T ss_dssp TESEEEETS--STESEECTTTT------TTGTTESEEEETS-SSESEEETTTTTTSTTESEEEETSS
T ss_pred cCcEEECCC--CCCCccCHHHH------cCCCCCCEeEccC-CccCccCHHHHcCCCCCCEEeCcCC
Confidence 445555554 24444444332 3344555555554 34444432 3344555555555444
No 41
>KOG2120 consensus SCF ubiquitin ligase, Skp2 component [Posttranslational modification, protein turnover, chaperones]
Probab=98.13 E-value=1.1e-07 Score=81.08 Aligned_cols=159 Identities=17% Similarity=0.191 Sum_probs=105.2
Q ss_pred CCCccEEeecccccCcccccCccC--CCcceEecccCccccccccccCcCCCCCCCccccccccccEEEecCCCccchhc
Q 018478 5 NSSLEILEIWSCRSLTYLAAVQLP--RSLKRLDIQCCSNIRTLTMEEGIQSSSSSSSRRYTSYLLEELCISSCRSLTSIF 82 (355)
Q Consensus 5 ~~~L~~L~l~~~~~l~~l~~~~~~--~~L~~L~l~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~~~ 82 (355)
|..|+.|.+++. .+.+--...++ .+|+.|++++|+.+....... ++..++.|.+|+++.|.-.+..
T Consensus 209 C~kLk~lSlEg~-~LdD~I~~~iAkN~~L~~lnlsm~sG~t~n~~~l----------l~~scs~L~~LNlsWc~l~~~~- 276 (419)
T KOG2120|consen 209 CSKLKNLSLEGL-RLDDPIVNTIAKNSNLVRLNLSMCSGFTENALQL----------LLSSCSRLDELNLSWCFLFTEK- 276 (419)
T ss_pred HHhhhhcccccc-ccCcHHHHHHhccccceeeccccccccchhHHHH----------HHHhhhhHhhcCchHhhccchh-
Confidence 455666777653 23221112233 789999999998777655443 3566899999999988654433
Q ss_pred cccccchhccccccCCCCCcccEEEEccCcch---hchhhhccCCCCCcEEEeeccCCcCc-ccccccCCCCCceEeccc
Q 018478 83 SKNELSATLESLEVGNLPPSLKSLRVQGCSKL---ESIAETLDNSTSLETIHIFYCENMKI-LPSGLHNLRQLQEISIEG 158 (355)
Q Consensus 83 ~~n~~~~~~~~~~~~~~~~~L~~L~l~~~~~~---~~~~~~~~~l~~L~~L~l~~~~~~~~-~~~~~~~l~~L~~L~l~~ 158 (355)
.+. ......++|+.|+++++..- ..+..-..+|++|.+|++++|-.+.. ....+.+++-|+++.++.
T Consensus 277 ----Vtv-----~V~hise~l~~LNlsG~rrnl~~sh~~tL~~rcp~l~~LDLSD~v~l~~~~~~~~~kf~~L~~lSlsR 347 (419)
T KOG2120|consen 277 ----VTV-----AVAHISETLTQLNLSGYRRNLQKSHLSTLVRRCPNLVHLDLSDSVMLKNDCFQEFFKFNYLQHLSLSR 347 (419)
T ss_pred ----hhH-----HHhhhchhhhhhhhhhhHhhhhhhHHHHHHHhCCceeeeccccccccCchHHHHHHhcchheeeehhh
Confidence 111 11234578999999987532 22333346799999999999876653 345677889999999999
Q ss_pred cCCCcC-CCCCCCCCCCcceEEEcccc
Q 018478 159 CGNLES-FPEGGLPCAKLKEVVIRWCG 184 (355)
Q Consensus 159 ~~~l~~-~~~~~~~~~~L~~L~l~~~~ 184 (355)
|..+.. .--.+.+.+.|..|++.+|-
T Consensus 348 CY~i~p~~~~~l~s~psl~yLdv~g~v 374 (419)
T KOG2120|consen 348 CYDIIPETLLELNSKPSLVYLDVFGCV 374 (419)
T ss_pred hcCCChHHeeeeccCcceEEEEecccc
Confidence 865421 11245567899999999874
No 42
>PF13855 LRR_8: Leucine rich repeat; PDB: 2O6S_A 3A79_B 3RFS_A 3G39_A 3VQ2_A 3VQ1_B 2Z64_A 2Z66_C 3FXI_A 2Z63_A ....
Probab=98.10 E-value=3e-06 Score=56.17 Aligned_cols=56 Identities=23% Similarity=0.424 Sum_probs=31.7
Q ss_pred cccEEEEccCcchhchh-hhccCCCCCcEEEeeccCCcCccc-ccccCCCCCceEecccc
Q 018478 102 SLKSLRVQGCSKLESIA-ETLDNSTSLETIHIFYCENMKILP-SGLHNLRQLQEISIEGC 159 (355)
Q Consensus 102 ~L~~L~l~~~~~~~~~~-~~~~~l~~L~~L~l~~~~~~~~~~-~~~~~l~~L~~L~l~~~ 159 (355)
+|++|++++|. +..+| ..|..+++|++|++++|. +..++ ..+.++++|+.|++++|
T Consensus 2 ~L~~L~l~~n~-l~~i~~~~f~~l~~L~~L~l~~N~-l~~i~~~~f~~l~~L~~L~l~~N 59 (61)
T PF13855_consen 2 NLESLDLSNNK-LTEIPPDSFSNLPNLETLDLSNNN-LTSIPPDAFSNLPNLRYLDLSNN 59 (61)
T ss_dssp TESEEEETSST-ESEECTTTTTTGTTESEEEETSSS-ESEEETTTTTTSTTESEEEETSS
T ss_pred cCcEEECCCCC-CCccCHHHHcCCCCCCEeEccCCc-cCccCHHHHcCCCCCCEEeCcCC
Confidence 56666666654 55554 344556666666666555 44443 34555666666666554
No 43
>KOG1909 consensus Ran GTPase-activating protein [RNA processing and modification; Nuclear structure; Signal transduction mechanisms]
Probab=98.09 E-value=7.6e-07 Score=77.66 Aligned_cols=230 Identities=17% Similarity=0.164 Sum_probs=132.4
Q ss_pred CCcccEEEEccCcchh----chhhhccCCCCCcEEEeeccC--Cc-Ccc-------cccccCCCCCceEeccccCCCcCC
Q 018478 100 PPSLKSLRVQGCSKLE----SIAETLDNSTSLETIHIFYCE--NM-KIL-------PSGLHNLRQLQEISIEGCGNLESF 165 (355)
Q Consensus 100 ~~~L~~L~l~~~~~~~----~~~~~~~~l~~L~~L~l~~~~--~~-~~~-------~~~~~~l~~L~~L~l~~~~~l~~~ 165 (355)
..+++++++++|.... .+.+.+.+-++|+.-++++-- +. ..+ .+.+..+++|+.++++.|-.-...
T Consensus 29 ~~s~~~l~lsgnt~G~EAa~~i~~~L~~~~~L~~v~~sd~ftGR~~~Ei~e~L~~l~~aL~~~~~L~~ldLSDNA~G~~g 108 (382)
T KOG1909|consen 29 MDSLTKLDLSGNTFGTEAARAIAKVLASKKELREVNLSDMFTGRLKDEIPEALKMLSKALLGCPKLQKLDLSDNAFGPKG 108 (382)
T ss_pred cCceEEEeccCCchhHHHHHHHHHHHhhcccceeeehHhhhcCCcHHHHHHHHHHHHHHHhcCCceeEeeccccccCccc
Confidence 4689999999998433 245566667788888877532 11 122 334556789999999997432223
Q ss_pred CC----CCCCCCCcceEEEccccCcCccc--------------ccccCCCCCceEEEeecCcCCCC---------CCCCc
Q 018478 166 PE----GGLPCAKLKEVVIRWCGRLEALP--------------KGLHNLKSLQKLTIGKGGLEEDG---------LPTNL 218 (355)
Q Consensus 166 ~~----~~~~~~~L~~L~l~~~~~~~~~p--------------~~l~~~~~L~~L~l~~~~i~~~~---------~~~~L 218 (355)
++ .+.++..|++|++.+|- +.... .-.+.-+.|+++..+.+.+.+.+ ..+.|
T Consensus 109 ~~~l~~ll~s~~~L~eL~L~N~G-lg~~ag~~l~~al~~l~~~kk~~~~~~Lrv~i~~rNrlen~ga~~~A~~~~~~~~l 187 (382)
T KOG1909|consen 109 IRGLEELLSSCTDLEELYLNNCG-LGPEAGGRLGRALFELAVNKKAASKPKLRVFICGRNRLENGGATALAEAFQSHPTL 187 (382)
T ss_pred hHHHHHHHHhccCHHHHhhhcCC-CChhHHHHHHHHHHHHHHHhccCCCcceEEEEeeccccccccHHHHHHHHHhcccc
Confidence 22 34458899999999864 32211 12344567888877755444432 33677
Q ss_pred cEEEecCCcchhhhhhhhcccCCCCCccceeEecccCCcccccCccccccCCCCCCCCccceEEeccCCCcc----cccc
Q 018478 219 HSLDIRGNMEIWKSMIEWGQGFHRFSSLRELRIEGCDDDMVSFPPEDIRMGTTLPLPTSLTSLAIFSFPNLE----RLSS 294 (355)
Q Consensus 219 ~~L~l~~~~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~l~----~l~~ 294 (355)
+.+.+..|..-..-.......+..+++|+.|++.. +.++.-... .+...+...++|+++.+++|.--. .+..
T Consensus 188 eevr~~qN~I~~eG~~al~eal~~~~~LevLdl~D--Ntft~egs~--~LakaL~s~~~L~El~l~dcll~~~Ga~a~~~ 263 (382)
T KOG1909|consen 188 EEVRLSQNGIRPEGVTALAEALEHCPHLEVLDLRD--NTFTLEGSV--ALAKALSSWPHLRELNLGDCLLENEGAIAFVD 263 (382)
T ss_pred ceEEEecccccCchhHHHHHHHHhCCcceeeeccc--chhhhHHHH--HHHHHhcccchheeecccccccccccHHHHHH
Confidence 77777776543322211112267778888888876 333221110 011112344578888888874222 1111
Q ss_pred cC-CCCCCccEEeeCCCCCCcccCCC------CCCCCccEEEecCCch
Q 018478 295 SI-VDLQNLTSLYLVGCPKLKYFPEK------GLPSSLLELWIGGCPL 335 (355)
Q Consensus 295 ~~-~~~~~L~~L~l~~~~~l~~~~~~------~~~~~L~~L~l~~c~~ 335 (355)
.+ ...|+|..|.+.+| .++.=... .--|.|..|++.+|..
T Consensus 264 al~~~~p~L~vl~l~gN-eIt~da~~~la~~~~ek~dL~kLnLngN~l 310 (382)
T KOG1909|consen 264 ALKESAPSLEVLELAGN-EITRDAALALAACMAEKPDLEKLNLNGNRL 310 (382)
T ss_pred HHhccCCCCceeccCcc-hhHHHHHHHHHHHHhcchhhHHhcCCcccc
Confidence 11 45778888888887 45541110 0147888888887754
No 44
>PLN03150 hypothetical protein; Provisional
Probab=98.05 E-value=8.8e-06 Score=79.94 Aligned_cols=91 Identities=14% Similarity=0.128 Sum_probs=43.2
Q ss_pred ccEEEEccCcchhchhhhccCCCCCcEEEeeccCCcCcccccccCCCCCceEeccccCCCcCCCCCCCCCCCcceEEEcc
Q 018478 103 LKSLRVQGCSKLESIAETLDNSTSLETIHIFYCENMKILPSGLHNLRQLQEISIEGCGNLESFPEGGLPCAKLKEVVIRW 182 (355)
Q Consensus 103 L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~l~~~~~~~~~~~~L~~L~l~~ 182 (355)
++.|++++|.....+|..++.+++|+.|++++|.....+|..++.+++|+.|++++|.....+|..+..+++|+.|++++
T Consensus 420 v~~L~L~~n~L~g~ip~~i~~L~~L~~L~Ls~N~l~g~iP~~~~~l~~L~~LdLs~N~lsg~iP~~l~~L~~L~~L~Ls~ 499 (623)
T PLN03150 420 IDGLGLDNQGLRGFIPNDISKLRHLQSINLSGNSIRGNIPPSLGSITSLEVLDLSYNSFNGSIPESLGQLTSLRILNLNG 499 (623)
T ss_pred EEEEECCCCCccccCCHHHhCCCCCCEEECCCCcccCcCChHHhCCCCCCEEECCCCCCCCCCchHHhcCCCCCEEECcC
Confidence 44445554442223444455555555555555543334444455555555555555433334444444555555555555
Q ss_pred ccCcCcccccc
Q 018478 183 CGRLEALPKGL 193 (355)
Q Consensus 183 ~~~~~~~p~~l 193 (355)
|.....+|..+
T Consensus 500 N~l~g~iP~~l 510 (623)
T PLN03150 500 NSLSGRVPAAL 510 (623)
T ss_pred CcccccCChHH
Confidence 44333444433
No 45
>KOG1909 consensus Ran GTPase-activating protein [RNA processing and modification; Nuclear structure; Signal transduction mechanisms]
Probab=97.99 E-value=3.3e-06 Score=73.79 Aligned_cols=130 Identities=19% Similarity=0.259 Sum_probs=75.4
Q ss_pred CCcceEEEccccCcCccc-----ccccCCCCCceEEEeecCcCCC---------CCCCCccEEEecCCcchhhhhhhhcc
Q 018478 173 AKLKEVVIRWCGRLEALP-----KGLHNLKSLQKLTIGKGGLEED---------GLPTNLHSLDIRGNMEIWKSMIEWGQ 238 (355)
Q Consensus 173 ~~L~~L~l~~~~~~~~~p-----~~l~~~~~L~~L~l~~~~i~~~---------~~~~~L~~L~l~~~~~~~~~~~~~~~ 238 (355)
++|+.+..+.| ++.+.+ ..+...+.|+.+.+..+.|-.. ..+++|+.||+.+|............
T Consensus 157 ~~Lrv~i~~rN-rlen~ga~~~A~~~~~~~~leevr~~qN~I~~eG~~al~eal~~~~~LevLdl~DNtft~egs~~Lak 235 (382)
T KOG1909|consen 157 PKLRVFICGRN-RLENGGATALAEAFQSHPTLEEVRLSQNGIRPEGVTALAEALEHCPHLEVLDLRDNTFTLEGSVALAK 235 (382)
T ss_pred cceEEEEeecc-ccccccHHHHHHHHHhccccceEEEecccccCchhHHHHHHHHhCCcceeeecccchhhhHHHHHHHH
Confidence 46666666653 333322 2455566777777764444322 24577777788777644433322222
Q ss_pred cCCCCCccceeEecccCCccc----ccCccccccCCCCCCCCccceEEeccCCCcc-----cccccCCCCCCccEEeeCC
Q 018478 239 GFHRFSSLRELRIEGCDDDMV----SFPPEDIRMGTTLPLPTSLTSLAIFSFPNLE-----RLSSSIVDLQNLTSLYLVG 309 (355)
Q Consensus 239 ~~~~l~~L~~L~l~~~~~~~~----~~~~~~~~~~~~~~~~~~L~~L~l~~~~~l~-----~l~~~~~~~~~L~~L~l~~ 309 (355)
.+..+++|+.++++. |.--. .+...+- ...++|+.+.+.+| .++ .+...+...|.|..|++.+
T Consensus 236 aL~s~~~L~El~l~d-cll~~~Ga~a~~~al~------~~~p~L~vl~l~gN-eIt~da~~~la~~~~ek~dL~kLnLng 307 (382)
T KOG1909|consen 236 ALSSWPHLRELNLGD-CLLENEGAIAFVDALK------ESAPSLEVLELAGN-EITRDAALALAACMAEKPDLEKLNLNG 307 (382)
T ss_pred Hhcccchheeecccc-cccccccHHHHHHHHh------ccCCCCceeccCcc-hhHHHHHHHHHHHHhcchhhHHhcCCc
Confidence 256677888888888 64311 1111110 23568888988884 444 2333446688999999999
Q ss_pred CC
Q 018478 310 CP 311 (355)
Q Consensus 310 ~~ 311 (355)
|+
T Consensus 308 N~ 309 (382)
T KOG1909|consen 308 NR 309 (382)
T ss_pred cc
Confidence 83
No 46
>KOG1859 consensus Leucine-rich repeat proteins [General function prediction only]
Probab=97.86 E-value=2.4e-07 Score=87.98 Aligned_cols=120 Identities=24% Similarity=0.260 Sum_probs=84.7
Q ss_pred cccEEEEccCcchhchhhhccCCCCCcEEEeeccCCcCcccccccCCCCCceEeccccCCCcCCCCCCCCCCCcceEEEc
Q 018478 102 SLKSLRVQGCSKLESIAETLDNSTSLETIHIFYCENMKILPSGLHNLRQLQEISIEGCGNLESFPEGGLPCAKLKEVVIR 181 (355)
Q Consensus 102 ~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~l~~~~~~~~~~~~L~~L~l~ 181 (355)
.|...+.++|. +..+...+.-++.|+.|+++.|. ++... .+..++.|+.|+++.| .+..+|..-..--.|+.|.+.
T Consensus 165 ~L~~a~fsyN~-L~~mD~SLqll~ale~LnLshNk-~~~v~-~Lr~l~~LkhLDlsyN-~L~~vp~l~~~gc~L~~L~lr 240 (1096)
T KOG1859|consen 165 KLATASFSYNR-LVLMDESLQLLPALESLNLSHNK-FTKVD-NLRRLPKLKHLDLSYN-CLRHVPQLSMVGCKLQLLNLR 240 (1096)
T ss_pred hHhhhhcchhh-HHhHHHHHHHHHHhhhhccchhh-hhhhH-HHHhcccccccccccc-hhccccccchhhhhheeeeec
Confidence 56677777766 77777777778889999999877 55543 6777888999999886 677777533332248888888
Q ss_pred cccCcCcccccccCCCCCceEEEeecCcCC------CCCCCCccEEEecCCc
Q 018478 182 WCGRLEALPKGLHNLKSLQKLTIGKGGLEE------DGLPTNLHSLDIRGNM 227 (355)
Q Consensus 182 ~~~~~~~~p~~l~~~~~L~~L~l~~~~i~~------~~~~~~L~~L~l~~~~ 227 (355)
+| .++.+ .++.++++|+.|+++.+.+.. .+.+..|+.|++.||+
T Consensus 241 nN-~l~tL-~gie~LksL~~LDlsyNll~~hseL~pLwsLs~L~~L~LeGNP 290 (1096)
T KOG1859|consen 241 NN-ALTTL-RGIENLKSLYGLDLSYNLLSEHSELEPLWSLSSLIVLWLEGNP 290 (1096)
T ss_pred cc-HHHhh-hhHHhhhhhhccchhHhhhhcchhhhHHHHHHHHHHHhhcCCc
Confidence 85 45554 477888888888888443332 3344677788888776
No 47
>PLN03150 hypothetical protein; Provisional
Probab=97.84 E-value=4.1e-05 Score=75.32 Aligned_cols=91 Identities=20% Similarity=0.173 Sum_probs=74.0
Q ss_pred CCCCcccEEEEccCcchhchhhhccCCCCCcEEEeeccCCcCcccccccCCCCCceEeccccCCCcCCCCCCCC-CCCcc
Q 018478 98 NLPPSLKSLRVQGCSKLESIAETLDNSTSLETIHIFYCENMKILPSGLHNLRQLQEISIEGCGNLESFPEGGLP-CAKLK 176 (355)
Q Consensus 98 ~~~~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~l~~~~~~~~~-~~~L~ 176 (355)
..+++|+.|++++|.....+|..++.+++|+.|++++|.....+|..++++++|+.|++++|.....+|..+.. ..++.
T Consensus 439 ~~L~~L~~L~Ls~N~l~g~iP~~~~~l~~L~~LdLs~N~lsg~iP~~l~~L~~L~~L~Ls~N~l~g~iP~~l~~~~~~~~ 518 (623)
T PLN03150 439 SKLRHLQSINLSGNSIRGNIPPSLGSITSLEVLDLSYNSFNGSIPESLGQLTSLRILNLNGNSLSGRVPAALGGRLLHRA 518 (623)
T ss_pred hCCCCCCEEECCCCcccCcCChHHhCCCCCCEEECCCCCCCCCCchHHhcCCCCCEEECcCCcccccCChHHhhccccCc
Confidence 45589999999999844578888999999999999999866788999999999999999998655677776554 24667
Q ss_pred eEEEccccCcCc
Q 018478 177 EVVIRWCGRLEA 188 (355)
Q Consensus 177 ~L~l~~~~~~~~ 188 (355)
.+++.+|..+..
T Consensus 519 ~l~~~~N~~lc~ 530 (623)
T PLN03150 519 SFNFTDNAGLCG 530 (623)
T ss_pred eEEecCCccccC
Confidence 888888765443
No 48
>KOG0531 consensus Protein phosphatase 1, regulatory subunit, and related proteins [Signal transduction mechanisms]
Probab=97.84 E-value=2e-06 Score=80.54 Aligned_cols=190 Identities=22% Similarity=0.302 Sum_probs=115.9
Q ss_pred CCCCcccEEEEccCcchhchhhhccCCCCCcEEEeeccCCcCcccccccCCCCCceEeccccCCCcCCCCCCCCCCCcce
Q 018478 98 NLPPSLKSLRVQGCSKLESIAETLDNSTSLETIHIFYCENMKILPSGLHNLRQLQEISIEGCGNLESFPEGGLPCAKLKE 177 (355)
Q Consensus 98 ~~~~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~l~~~~~~~~~~~~L~~ 177 (355)
..+.+|+.+++.+|. +..+...+..+++|++|++++|. ++.+. .+..++.|+.|++.+| .+..+. .+..+++|+.
T Consensus 92 ~~~~~l~~l~l~~n~-i~~i~~~l~~~~~L~~L~ls~N~-I~~i~-~l~~l~~L~~L~l~~N-~i~~~~-~~~~l~~L~~ 166 (414)
T KOG0531|consen 92 SKLKSLEALDLYDNK-IEKIENLLSSLVNLQVLDLSFNK-ITKLE-GLSTLTLLKELNLSGN-LISDIS-GLESLKSLKL 166 (414)
T ss_pred ccccceeeeeccccc-hhhcccchhhhhcchheeccccc-ccccc-chhhccchhhheeccC-cchhcc-CCccchhhhc
Confidence 445788999998887 76665546678899999999877 66553 4566777889999887 555553 3444778888
Q ss_pred EEEccccCcCccccc-ccCCCCCceEEEeecCcCCCC---CCCCccEEEecCCcchhhhhhhhcccCCCCCc--cceeEe
Q 018478 178 VVIRWCGRLEALPKG-LHNLKSLQKLTIGKGGLEEDG---LPTNLHSLDIRGNMEIWKSMIEWGQGFHRFSS--LRELRI 251 (355)
Q Consensus 178 L~l~~~~~~~~~p~~-l~~~~~L~~L~l~~~~i~~~~---~~~~L~~L~l~~~~~~~~~~~~~~~~~~~l~~--L~~L~l 251 (355)
+++++|. +..+... ...+.+++.+++..+.+.... ....+..+++.++....... +..+.. |+.+++
T Consensus 167 l~l~~n~-i~~ie~~~~~~~~~l~~l~l~~n~i~~i~~~~~~~~l~~~~l~~n~i~~~~~------l~~~~~~~L~~l~l 239 (414)
T KOG0531|consen 167 LDLSYNR-IVDIENDELSELISLEELDLGGNSIREIEGLDLLKKLVLLSLLDNKISKLEG------LNELVMLHLRELYL 239 (414)
T ss_pred ccCCcch-hhhhhhhhhhhccchHHHhccCCchhcccchHHHHHHHHhhcccccceeccC------cccchhHHHHHHhc
Confidence 8888854 4443322 467778888888755554433 22334444555544322111 233333 788888
Q ss_pred cccCCcccccCccccccCCCCCCCCccceEEeccCCCcccccccCCCCCCccEEeeCCC
Q 018478 252 EGCDDDMVSFPPEDIRMGTTLPLPTSLTSLAIFSFPNLERLSSSIVDLQNLTSLYLVGC 310 (355)
Q Consensus 252 ~~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~l~~~~~~~~~L~~L~l~~~ 310 (355)
++ +.+..++... .....+..+++.+ +.+..+.. +...+.+..+...++
T Consensus 240 ~~--n~i~~~~~~~-------~~~~~l~~l~~~~-n~~~~~~~-~~~~~~~~~~~~~~~ 287 (414)
T KOG0531|consen 240 SG--NRISRSPEGL-------ENLKNLPVLDLSS-NRISNLEG-LERLPKLSELWLNDN 287 (414)
T ss_pred cc--Cccccccccc-------cccccccccchhh-cccccccc-ccccchHHHhccCcc
Confidence 87 5665553323 3556777788777 44443321 234444555555444
No 49
>KOG1947 consensus Leucine rich repeat proteins, some proteins contain F-box [General function prediction only]
Probab=97.77 E-value=2.5e-06 Score=81.41 Aligned_cols=241 Identities=22% Similarity=0.302 Sum_probs=116.5
Q ss_pred cccccEEEecCCCccchhccccccchhccccccCCCCCcccEEEEccC-cchhch----hhhccCCCCCcEEEeeccCCc
Q 018478 64 SYLLEELCISSCRSLTSIFSKNELSATLESLEVGNLPPSLKSLRVQGC-SKLESI----AETLDNSTSLETIHIFYCENM 138 (355)
Q Consensus 64 ~~~L~~L~l~~~~~l~~~~~~n~~~~~~~~~~~~~~~~~L~~L~l~~~-~~~~~~----~~~~~~l~~L~~L~l~~~~~~ 138 (355)
++.|+.+.+.+|..+...- .. +.....++|+.|+++++ ...... ......+++|+.|++..+..+
T Consensus 187 ~~~L~~l~l~~~~~~~~~~----~~------~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~L~~l~l~~~~~i 256 (482)
T KOG1947|consen 187 CPLLKRLSLSGCSKITDDS----LD------ALALKCPNLEELDLSGCCLLITLSPLLLLLLLSICRKLKSLDLSGCGLV 256 (482)
T ss_pred CchhhHhhhcccccCChhh----HH------HHHhhCchhheecccCcccccccchhHhhhhhhhcCCcCccchhhhhcc
Confidence 5666666666665554420 00 22344567777777662 212111 122334677777777776644
Q ss_pred Ccc--cccccCCCCCceEeccccCCCcC--CCCCCCCCCCcceEEEccccCcCc--ccccccCCCCCceEEEeecCcCCC
Q 018478 139 KIL--PSGLHNLRQLQEISIEGCGNLES--FPEGGLPCAKLKEVVIRWCGRLEA--LPKGLHNLKSLQKLTIGKGGLEED 212 (355)
Q Consensus 139 ~~~--~~~~~~l~~L~~L~l~~~~~l~~--~~~~~~~~~~L~~L~l~~~~~~~~--~p~~l~~~~~L~~L~l~~~~i~~~ 212 (355)
+.. ......+++|+.|.+.+|..++. +-.....+++|++|++++|..+++ +......+++++.|.+.. .
T Consensus 257 sd~~l~~l~~~c~~L~~L~l~~c~~lt~~gl~~i~~~~~~L~~L~l~~c~~~~d~~l~~~~~~c~~l~~l~~~~-----~ 331 (482)
T KOG1947|consen 257 TDIGLSALASRCPNLETLSLSNCSNLTDEGLVSIAERCPSLRELDLSGCHGLTDSGLEALLKNCPNLRELKLLS-----L 331 (482)
T ss_pred CchhHHHHHhhCCCcceEccCCCCccchhHHHHHHHhcCcccEEeeecCccchHHHHHHHHHhCcchhhhhhhh-----c
Confidence 432 11122266777777666654322 112233356777777777766533 112233455555544320 0
Q ss_pred CCCCCccEEEecCCcchh-hhhhhhcccCCCCCccceeEecccCCcccccCccccccCCCCCCCCccceEEeccCCCc-c
Q 018478 213 GLPTNLHSLDIRGNMEIW-KSMIEWGQGFHRFSSLRELRIEGCDDDMVSFPPEDIRMGTTLPLPTSLTSLAIFSFPNL-E 290 (355)
Q Consensus 213 ~~~~~L~~L~l~~~~~~~-~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~l-~ 290 (355)
.....++.+.+.++.... +...... +..+++++.+.+.. |. ..... ..+.+.+|+.+ .
T Consensus 332 ~~c~~l~~~~l~~~~~~~~d~~~~~~--~~~~~~l~~~~l~~-~~-~~~~~----------------~~~~l~gc~~l~~ 391 (482)
T KOG1947|consen 332 NGCPSLTDLSLSGLLTLTSDDLAELI--LRSCPKLTDLSLSY-CG-ISDLG----------------LELSLRGCPNLTE 391 (482)
T ss_pred CCCccHHHHHHHHhhccCchhHhHHH--HhcCCCcchhhhhh-hh-ccCcc----------------hHHHhcCCcccch
Confidence 002344444444333222 1222222 55666666666666 43 22211 03345556655 3
Q ss_pred cccccCCCCCCccEEeeCCCCCCcccCCCC--C-CCCccEEEecCCchhhHh
Q 018478 291 RLSSSIVDLQNLTSLYLVGCPKLKYFPEKG--L-PSSLLELWIGGCPLIEEK 339 (355)
Q Consensus 291 ~l~~~~~~~~~L~~L~l~~~~~l~~~~~~~--~-~~~L~~L~l~~c~~l~~~ 339 (355)
.+........+++.|.+..|..++.-.... . +..++.+++.+|+.+...
T Consensus 392 ~l~~~~~~~~~l~~L~l~~~~~~t~~~l~~~~~~~~~~~~l~~~~~~~~~~~ 443 (482)
T KOG1947|consen 392 SLELRLCRSDSLRVLNLSDCRLVTDKGLRCLADSCSNLKDLDLSGCRVITLK 443 (482)
T ss_pred HHHHHhccCCccceEecccCccccccchHHHhhhhhccccCCccCcccccch
Confidence 333222344447777777775444322211 1 456677777777665554
No 50
>PF12799 LRR_4: Leucine Rich repeats (2 copies); PDB: 2OMT_A 1XEU_A 2OMX_A 2OMU_A 2UZY_A 2WQU_D 1D0B_A 2WQW_A 1OTO_A 2WQV_B ....
Probab=97.75 E-value=5.3e-05 Score=46.25 Aligned_cols=39 Identities=18% Similarity=0.302 Sum_probs=26.0
Q ss_pred CcccEEEEccCcchhchhhhccCCCCCcEEEeeccCCcCcc
Q 018478 101 PSLKSLRVQGCSKLESIAETLDNSTSLETIHIFYCENMKIL 141 (355)
Q Consensus 101 ~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~ 141 (355)
++|++|++++|. ++.+|+.++++++|+.|++++|+ ++.+
T Consensus 1 ~~L~~L~l~~N~-i~~l~~~l~~l~~L~~L~l~~N~-i~~i 39 (44)
T PF12799_consen 1 KNLEELDLSNNQ-ITDLPPELSNLPNLETLNLSNNP-ISDI 39 (44)
T ss_dssp TT-SEEEETSSS--SSHGGHGTTCTTSSEEEETSSC-CSBE
T ss_pred CcceEEEccCCC-CcccCchHhCCCCCCEEEecCCC-CCCC
Confidence 357777777776 66777667777777777777776 5544
No 51
>PF12799 LRR_4: Leucine Rich repeats (2 copies); PDB: 2OMT_A 1XEU_A 2OMX_A 2OMU_A 2UZY_A 2WQU_D 1D0B_A 2WQW_A 1OTO_A 2WQV_B ....
Probab=97.68 E-value=5.9e-05 Score=46.03 Aligned_cols=40 Identities=20% Similarity=0.326 Sum_probs=31.1
Q ss_pred CccceEEeccCCCcccccccCCCCCCccEEeeCCCCCCcccC
Q 018478 276 TSLTSLAIFSFPNLERLSSSIVDLQNLTSLYLVGCPKLKYFP 317 (355)
Q Consensus 276 ~~L~~L~l~~~~~l~~l~~~~~~~~~L~~L~l~~~~~l~~~~ 317 (355)
++|++|++++ +.++.+|..+..+++|+.|++++| ++++++
T Consensus 1 ~~L~~L~l~~-N~i~~l~~~l~~l~~L~~L~l~~N-~i~~i~ 40 (44)
T PF12799_consen 1 KNLEELDLSN-NQITDLPPELSNLPNLETLNLSNN-PISDIS 40 (44)
T ss_dssp TT-SEEEETS-SS-SSHGGHGTTCTTSSEEEETSS-CCSBEG
T ss_pred CcceEEEccC-CCCcccCchHhCCCCCCEEEecCC-CCCCCc
Confidence 4688888888 688888877888999999999888 677765
No 52
>KOG0531 consensus Protein phosphatase 1, regulatory subunit, and related proteins [Signal transduction mechanisms]
Probab=97.67 E-value=4.8e-06 Score=77.98 Aligned_cols=144 Identities=17% Similarity=0.180 Sum_probs=83.7
Q ss_pred CCCCcccEEEEccCcchhchhhhccCCCCCcEEEeeccCCcCcccccccCCCCCceEeccccCCCcCCCCC-CCCCCCcc
Q 018478 98 NLPPSLKSLRVQGCSKLESIAETLDNSTSLETIHIFYCENMKILPSGLHNLRQLQEISIEGCGNLESFPEG-GLPCAKLK 176 (355)
Q Consensus 98 ~~~~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~l~~~~~~-~~~~~~L~ 176 (355)
..+++|+.|++++|. +..+. .+..++.|+.|++.+|. +..+. .+..+++|+.+++++| .+..+... ...+.+++
T Consensus 115 ~~~~~L~~L~ls~N~-I~~i~-~l~~l~~L~~L~l~~N~-i~~~~-~~~~l~~L~~l~l~~n-~i~~ie~~~~~~~~~l~ 189 (414)
T KOG0531|consen 115 SSLVNLQVLDLSFNK-ITKLE-GLSTLTLLKELNLSGNL-ISDIS-GLESLKSLKLLDLSYN-RIVDIENDELSELISLE 189 (414)
T ss_pred hhhhcchheeccccc-ccccc-chhhccchhhheeccCc-chhcc-CCccchhhhcccCCcc-hhhhhhhhhhhhccchH
Confidence 445788888888877 65553 34556778888888877 55553 3455778888888876 34433321 34567788
Q ss_pred eEEEccccCcCcccccccCCCCCceEEEeecCcCCCCCC---CC--ccEEEecCCcchhhhhhhhcccCCCCCccceeEe
Q 018478 177 EVVIRWCGRLEALPKGLHNLKSLQKLTIGKGGLEEDGLP---TN--LHSLDIRGNMEIWKSMIEWGQGFHRFSSLRELRI 251 (355)
Q Consensus 177 ~L~l~~~~~~~~~p~~l~~~~~L~~L~l~~~~i~~~~~~---~~--L~~L~l~~~~~~~~~~~~~~~~~~~l~~L~~L~l 251 (355)
.+++.+|. +..+ ..+..+..+..+.+..+.+...... .. |+.+++.+++...... . +..+..+..+++
T Consensus 190 ~l~l~~n~-i~~i-~~~~~~~~l~~~~l~~n~i~~~~~l~~~~~~~L~~l~l~~n~i~~~~~---~--~~~~~~l~~l~~ 262 (414)
T KOG0531|consen 190 ELDLGGNS-IREI-EGLDLLKKLVLLSLLDNKISKLEGLNELVMLHLRELYLSGNRISRSPE---G--LENLKNLPVLDL 262 (414)
T ss_pred HHhccCCc-hhcc-cchHHHHHHHHhhcccccceeccCcccchhHHHHHHhcccCccccccc---c--ccccccccccch
Confidence 88887753 2222 2333333444444443444432221 22 6777777776433211 1 556677777777
Q ss_pred cc
Q 018478 252 EG 253 (355)
Q Consensus 252 ~~ 253 (355)
..
T Consensus 263 ~~ 264 (414)
T KOG0531|consen 263 SS 264 (414)
T ss_pred hh
Confidence 76
No 53
>KOG3665 consensus ZYG-1-like serine/threonine protein kinases [General function prediction only]
Probab=97.60 E-value=2.8e-05 Score=76.61 Aligned_cols=126 Identities=20% Similarity=0.214 Sum_probs=78.1
Q ss_pred CcccEEEEccCcchh-chhhhcc-CCCCCcEEEeeccCCcC-cccccccCCCCCceEeccccCCCcCCCCCCCCCCCcce
Q 018478 101 PSLKSLRVQGCSKLE-SIAETLD-NSTSLETIHIFYCENMK-ILPSGLHNLRQLQEISIEGCGNLESFPEGGLPCAKLKE 177 (355)
Q Consensus 101 ~~L~~L~l~~~~~~~-~~~~~~~-~l~~L~~L~l~~~~~~~-~~~~~~~~l~~L~~L~l~~~~~l~~~~~~~~~~~~L~~ 177 (355)
.+|+.|++++...+. ..|..++ .+|+|++|.+.+-.... ++.....++++|..||++++ +++.+ .++..+++|+.
T Consensus 122 ~nL~~LdI~G~~~~s~~W~~kig~~LPsL~sL~i~~~~~~~~dF~~lc~sFpNL~sLDIS~T-nI~nl-~GIS~LknLq~ 199 (699)
T KOG3665|consen 122 QNLQHLDISGSELFSNGWPKKIGTMLPSLRSLVISGRQFDNDDFSQLCASFPNLRSLDISGT-NISNL-SGISRLKNLQV 199 (699)
T ss_pred HhhhhcCccccchhhccHHHHHhhhCcccceEEecCceecchhHHHHhhccCccceeecCCC-CccCc-HHHhccccHHH
Confidence 468888888755333 3344443 47888888888744221 23344556888888888885 66666 56777888888
Q ss_pred EEEccccCcCccc--ccccCCCCCceEEEeecCcC-----------CCCCCCCccEEEecCCcch
Q 018478 178 VVIRWCGRLEALP--KGLHNLKSLQKLTIGKGGLE-----------EDGLPTNLHSLDIRGNMEI 229 (355)
Q Consensus 178 L~l~~~~~~~~~p--~~l~~~~~L~~L~l~~~~i~-----------~~~~~~~L~~L~l~~~~~~ 229 (355)
|.+.+-. ++... ..+..+++|++|+++..... ....+|+|+.||.++...-
T Consensus 200 L~mrnLe-~e~~~~l~~LF~L~~L~vLDIS~~~~~~~~~ii~qYlec~~~LpeLrfLDcSgTdi~ 263 (699)
T KOG3665|consen 200 LSMRNLE-FESYQDLIDLFNLKKLRVLDISRDKNNDDTKIIEQYLECGMVLPELRFLDCSGTDIN 263 (699)
T ss_pred HhccCCC-CCchhhHHHHhcccCCCeeeccccccccchHHHHHHHHhcccCccccEEecCCcchh
Confidence 8776632 22211 36677888888888721111 1234567777777765433
No 54
>KOG1947 consensus Leucine rich repeat proteins, some proteins contain F-box [General function prediction only]
Probab=97.56 E-value=9.2e-06 Score=77.53 Aligned_cols=62 Identities=29% Similarity=0.516 Sum_probs=29.3
Q ss_pred CcccEEEEccCcchhc--hhhhccCCCCCcEEEeeccCCcCc--ccccccCCCCCceEeccccCCC
Q 018478 101 PSLKSLRVQGCSKLES--IAETLDNSTSLETIHIFYCENMKI--LPSGLHNLRQLQEISIEGCGNL 162 (355)
Q Consensus 101 ~~L~~L~l~~~~~~~~--~~~~~~~l~~L~~L~l~~~~~~~~--~~~~~~~l~~L~~L~l~~~~~l 162 (355)
++|+.++++.+..++. +......|++|++|.+..|..++. +......+++|+.|++++|..+
T Consensus 243 ~~L~~l~l~~~~~isd~~l~~l~~~c~~L~~L~l~~c~~lt~~gl~~i~~~~~~L~~L~l~~c~~~ 308 (482)
T KOG1947|consen 243 RKLKSLDLSGCGLVTDIGLSALASRCPNLETLSLSNCSNLTDEGLVSIAERCPSLRELDLSGCHGL 308 (482)
T ss_pred CCcCccchhhhhccCchhHHHHHhhCCCcceEccCCCCccchhHHHHHHHhcCcccEEeeecCccc
Confidence 5566666655543332 112222355666666555553322 2223334555666666655443
No 55
>KOG2982 consensus Uncharacterized conserved protein [Function unknown]
Probab=97.33 E-value=0.00047 Score=59.50 Aligned_cols=183 Identities=15% Similarity=0.154 Sum_probs=97.9
Q ss_pred CCCCCcEEEeeccCCcCc---ccccccCCCCCceEeccccCCCcCCCCCC-CCCCCcceEEEccccCc-CcccccccCCC
Q 018478 123 NSTSLETIHIFYCENMKI---LPSGLHNLRQLQEISIEGCGNLESFPEGG-LPCAKLKEVVIRWCGRL-EALPKGLHNLK 197 (355)
Q Consensus 123 ~l~~L~~L~l~~~~~~~~---~~~~~~~l~~L~~L~l~~~~~l~~~~~~~-~~~~~L~~L~l~~~~~~-~~~p~~l~~~~ 197 (355)
.++.++++++.+|. +.. +...+.++|.|+.|+++.|+ +....... .+..+|+.+.+.+...- +..-..+..++
T Consensus 69 ~~~~v~elDL~~N~-iSdWseI~~ile~lP~l~~LNls~N~-L~s~I~~lp~p~~nl~~lVLNgT~L~w~~~~s~l~~lP 146 (418)
T KOG2982|consen 69 SVTDVKELDLTGNL-ISDWSEIGAILEQLPALTTLNLSCNS-LSSDIKSLPLPLKNLRVLVLNGTGLSWTQSTSSLDDLP 146 (418)
T ss_pred Hhhhhhhhhcccch-hccHHHHHHHHhcCccceEeeccCCc-CCCccccCcccccceEEEEEcCCCCChhhhhhhhhcch
Confidence 46677777777765 332 33445567777777777653 22211111 34567777777763210 11112345566
Q ss_pred CCceEEEeecC---c--CCC---CCCCCccEEEecCCcchhhhhhhhcccCCCCCccceeEecccCCcccccCccccccC
Q 018478 198 SLQKLTIGKGG---L--EED---GLPTNLHSLDIRGNMEIWKSMIEWGQGFHRFSSLRELRIEGCDDDMVSFPPEDIRMG 269 (355)
Q Consensus 198 ~L~~L~l~~~~---i--~~~---~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~ 269 (355)
.++.|+++.+. + .+. ...+.++++.+..|....-... ....+.+|++..+.+.. |+ +.+...+-
T Consensus 147 ~vtelHmS~N~~rq~n~Dd~c~e~~s~~v~tlh~~~c~~~~w~~~--~~l~r~Fpnv~sv~v~e-~P-lK~~s~ek---- 218 (418)
T KOG2982|consen 147 KVTELHMSDNSLRQLNLDDNCIEDWSTEVLTLHQLPCLEQLWLNK--NKLSRIFPNVNSVFVCE-GP-LKTESSEK---- 218 (418)
T ss_pred hhhhhhhccchhhhhccccccccccchhhhhhhcCCcHHHHHHHH--HhHHhhcccchheeeec-Cc-ccchhhcc----
Confidence 66777666331 1 111 1234666666666642221111 01134568888888877 43 22222211
Q ss_pred CCCCCCCccceEEeccCCCcccccc--cCCCCCCccEEeeCCCCCCcccC
Q 018478 270 TTLPLPTSLTSLAIFSFPNLERLSS--SIVDLQNLTSLYLVGCPKLKYFP 317 (355)
Q Consensus 270 ~~~~~~~~L~~L~l~~~~~l~~l~~--~~~~~~~L~~L~l~~~~~l~~~~ 317 (355)
....++.+..|.++. +++..+.+ .+.+++.|.-|.+.++|-...+.
T Consensus 219 -~se~~p~~~~LnL~~-~~idswasvD~Ln~f~~l~dlRv~~~Pl~d~l~ 266 (418)
T KOG2982|consen 219 -GSEPFPSLSCLNLGA-NNIDSWASVDALNGFPQLVDLRVSENPLSDPLR 266 (418)
T ss_pred -cCCCCCcchhhhhcc-cccccHHHHHHHcCCchhheeeccCCccccccc
Confidence 113456666777776 56665543 35778888888888887555443
No 56
>KOG3665 consensus ZYG-1-like serine/threonine protein kinases [General function prediction only]
Probab=97.24 E-value=0.00016 Score=71.32 Aligned_cols=132 Identities=20% Similarity=0.201 Sum_probs=80.0
Q ss_pred CCcceEecccCccc-cccccccCcCCCCCCCccccccccccEEEecCCCccchhccccccchhccccccCCCCCcccEEE
Q 018478 29 RSLKRLDIQCCSNI-RTLTMEEGIQSSSSSSSRRYTSYLLEELCISSCRSLTSIFSKNELSATLESLEVGNLPPSLKSLR 107 (355)
Q Consensus 29 ~~L~~L~l~~~~~l-~~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~~~~~n~~~~~~~~~~~~~~~~~L~~L~ 107 (355)
.+|++|+++|...+ ..++...+ ..+|.|++|.+.+- .+..- ++... ...+|+|..||
T Consensus 122 ~nL~~LdI~G~~~~s~~W~~kig-----------~~LPsL~sL~i~~~-~~~~~----dF~~l------c~sFpNL~sLD 179 (699)
T KOG3665|consen 122 QNLQHLDISGSELFSNGWPKKIG-----------TMLPSLRSLVISGR-QFDND----DFSQL------CASFPNLRSLD 179 (699)
T ss_pred HhhhhcCccccchhhccHHHHHh-----------hhCcccceEEecCc-eecch----hHHHH------hhccCccceee
Confidence 67888888884432 24444432 33888888888763 22111 11111 13457889999
Q ss_pred EccCcchhchhhhccCCCCCcEEEeeccCCcC-cccccccCCCCCceEeccccCCCcCC--C----CCCCCCCCcceEEE
Q 018478 108 VQGCSKLESIAETLDNSTSLETIHIFYCENMK-ILPSGLHNLRQLQEISIEGCGNLESF--P----EGGLPCAKLKEVVI 180 (355)
Q Consensus 108 l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~-~~~~~~~~l~~L~~L~l~~~~~l~~~--~----~~~~~~~~L~~L~l 180 (355)
++++. ++.+ .+++++++|+.|.+.+-.... ..-.++.++++|+.||++.-.....- . +-...+|+|+.|+.
T Consensus 180 IS~Tn-I~nl-~GIS~LknLq~L~mrnLe~e~~~~l~~LF~L~~L~vLDIS~~~~~~~~~ii~qYlec~~~LpeLrfLDc 257 (699)
T KOG3665|consen 180 ISGTN-ISNL-SGISRLKNLQVLSMRNLEFESYQDLIDLFNLKKLRVLDISRDKNNDDTKIIEQYLECGMVLPELRFLDC 257 (699)
T ss_pred cCCCC-ccCc-HHHhccccHHHHhccCCCCCchhhHHHHhcccCCCeeeccccccccchHHHHHHHHhcccCccccEEec
Confidence 98877 6666 577888888888877644222 11235677888888888874332211 0 11222678888888
Q ss_pred cccc
Q 018478 181 RWCG 184 (355)
Q Consensus 181 ~~~~ 184 (355)
+++.
T Consensus 258 SgTd 261 (699)
T KOG3665|consen 258 SGTD 261 (699)
T ss_pred CCcc
Confidence 8753
No 57
>KOG2982 consensus Uncharacterized conserved protein [Function unknown]
Probab=97.09 E-value=0.00032 Score=60.47 Aligned_cols=195 Identities=17% Similarity=0.110 Sum_probs=107.2
Q ss_pred CCCcccEEEEccCcchhc---hhhhccCCCCCcEEEeeccCCcCcccccc-cCCCCCceEeccccCCCcC-CCCCCCCCC
Q 018478 99 LPPSLKSLRVQGCSKLES---IAETLDNSTSLETIHIFYCENMKILPSGL-HNLRQLQEISIEGCGNLES-FPEGGLPCA 173 (355)
Q Consensus 99 ~~~~L~~L~l~~~~~~~~---~~~~~~~l~~L~~L~l~~~~~~~~~~~~~-~~l~~L~~L~l~~~~~l~~-~~~~~~~~~ 173 (355)
....++.+|+.+|. +.. +-..+..+|.|+.|+++.|+ +....+.. ....+|+.+.+.+..--.. .......+|
T Consensus 69 ~~~~v~elDL~~N~-iSdWseI~~ile~lP~l~~LNls~N~-L~s~I~~lp~p~~nl~~lVLNgT~L~w~~~~s~l~~lP 146 (418)
T KOG2982|consen 69 SVTDVKELDLTGNL-ISDWSEIGAILEQLPALTTLNLSCNS-LSSDIKSLPLPLKNLRVLVLNGTGLSWTQSTSSLDDLP 146 (418)
T ss_pred Hhhhhhhhhcccch-hccHHHHHHHHhcCccceEeeccCCc-CCCccccCcccccceEEEEEcCCCCChhhhhhhhhcch
Confidence 34678999999987 543 44556789999999999887 43322222 2456888888876422111 112233367
Q ss_pred CcceEEEccccCcCcc---ccccc-CCCCCceEEEe------ecCcC-CCCCCCCccEEEecCCcchhhhhhhhcccCCC
Q 018478 174 KLKEVVIRWCGRLEAL---PKGLH-NLKSLQKLTIG------KGGLE-EDGLPTNLHSLDIRGNMEIWKSMIEWGQGFHR 242 (355)
Q Consensus 174 ~L~~L~l~~~~~~~~~---p~~l~-~~~~L~~L~l~------~~~i~-~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~ 242 (355)
.+++|+++.|+. ..+ .+-.. .-+.+++|+.. ...+. -....+++..+-+..|+..+.... .. ...
T Consensus 147 ~vtelHmS~N~~-rq~n~Dd~c~e~~s~~v~tlh~~~c~~~~w~~~~~l~r~Fpnv~sv~v~e~PlK~~s~e-k~--se~ 222 (418)
T KOG2982|consen 147 KVTELHMSDNSL-RQLNLDDNCIEDWSTEVLTLHQLPCLEQLWLNKNKLSRIFPNVNSVFVCEGPLKTESSE-KG--SEP 222 (418)
T ss_pred hhhhhhhccchh-hhhccccccccccchhhhhhhcCCcHHHHHHHHHhHHhhcccchheeeecCcccchhhc-cc--CCC
Confidence 788888887621 110 01111 11234444333 00111 123457888888888874443332 23 566
Q ss_pred CCccceeEecccCCcccccCccccccCCCCCCCCccceEEeccCCCcccccc------cCCCCCCccEEe
Q 018478 243 FSSLRELRIEGCDDDMVSFPPEDIRMGTTLPLPTSLTSLAIFSFPNLERLSS------SIVDLQNLTSLY 306 (355)
Q Consensus 243 l~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~l~~------~~~~~~~L~~L~ 306 (355)
++.+..|+++. +++.+... ..++..+++|.-|.+.+.+-...+.. -++.+++++.|+
T Consensus 223 ~p~~~~LnL~~--~~idswas-----vD~Ln~f~~l~dlRv~~~Pl~d~l~~~err~llIaRL~~v~vLN 285 (418)
T KOG2982|consen 223 FPSLSCLNLGA--NNIDSWAS-----VDALNGFPQLVDLRVSENPLSDPLRGGERRFLLIARLTKVQVLN 285 (418)
T ss_pred CCcchhhhhcc--cccccHHH-----HHHHcCCchhheeeccCCcccccccCCcceEEEEeeccceEEec
Confidence 77777788876 44433221 01124667888888887655444432 124455555554
No 58
>KOG1644 consensus U2-associated snRNP A' protein [RNA processing and modification]
Probab=96.98 E-value=0.0018 Score=52.86 Aligned_cols=81 Identities=12% Similarity=0.216 Sum_probs=54.1
Q ss_pred CCcccEEEEccCcchhchhhhccCCCCCcEEEeeccCCcCcccccccC-CCCCceEeccccCCCcCCC--CCCCCCCCcc
Q 018478 100 PPSLKSLRVQGCSKLESIAETLDNSTSLETIHIFYCENMKILPSGLHN-LRQLQEISIEGCGNLESFP--EGGLPCAKLK 176 (355)
Q Consensus 100 ~~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~-l~~L~~L~l~~~~~l~~~~--~~~~~~~~L~ 176 (355)
..+...+|+++|+ +..++ .+..++.|..|.+..|. +..+...+.. +++|+.|.+.+| .+..+. +....|++|+
T Consensus 41 ~d~~d~iDLtdNd-l~~l~-~lp~l~rL~tLll~nNr-It~I~p~L~~~~p~l~~L~LtnN-si~~l~dl~pLa~~p~L~ 116 (233)
T KOG1644|consen 41 LDQFDAIDLTDND-LRKLD-NLPHLPRLHTLLLNNNR-ITRIDPDLDTFLPNLKTLILTNN-SIQELGDLDPLASCPKLE 116 (233)
T ss_pred ccccceecccccc-hhhcc-cCCCccccceEEecCCc-ceeeccchhhhccccceEEecCc-chhhhhhcchhccCCccc
Confidence 3567888888887 44332 35567888888888877 5555443433 577888888876 555443 2345577888
Q ss_pred eEEEcccc
Q 018478 177 EVVIRWCG 184 (355)
Q Consensus 177 ~L~l~~~~ 184 (355)
.|.+.+|+
T Consensus 117 ~Ltll~Np 124 (233)
T KOG1644|consen 117 YLTLLGNP 124 (233)
T ss_pred eeeecCCc
Confidence 88888764
No 59
>KOG1644 consensus U2-associated snRNP A' protein [RNA processing and modification]
Probab=96.96 E-value=0.0017 Score=52.93 Aligned_cols=103 Identities=17% Similarity=0.214 Sum_probs=75.8
Q ss_pred CCccEEEecCCcchhhhhhhhcccCCCCCccceeEecccCCcccccCccccccCCCCCCCCccceEEeccCCCcccccc-
Q 018478 216 TNLHSLDIRGNMEIWKSMIEWGQGFHRFSSLRELRIEGCDDDMVSFPPEDIRMGTTLPLPTSLTSLAIFSFPNLERLSS- 294 (355)
Q Consensus 216 ~~L~~L~l~~~~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~l~~- 294 (355)
.+...+|+++|..... .. +..+++|.+|.+.+ ++++.+.+.+. ...+.|+.|.+.+ +++..+.+
T Consensus 42 d~~d~iDLtdNdl~~l-~~-----lp~l~rL~tLll~n--NrIt~I~p~L~------~~~p~l~~L~Ltn-Nsi~~l~dl 106 (233)
T KOG1644|consen 42 DQFDAIDLTDNDLRKL-DN-----LPHLPRLHTLLLNN--NRITRIDPDLD------TFLPNLKTLILTN-NSIQELGDL 106 (233)
T ss_pred cccceecccccchhhc-cc-----CCCccccceEEecC--Ccceeeccchh------hhccccceEEecC-cchhhhhhc
Confidence 4666788888875432 21 77889999999988 88888887664 4667899999998 67776644
Q ss_pred -cCCCCCCccEEeeCCCCCCcccCC-CC--C--CCCccEEEecCCc
Q 018478 295 -SIVDLQNLTSLYLVGCPKLKYFPE-KG--L--PSSLLELWIGGCP 334 (355)
Q Consensus 295 -~~~~~~~L~~L~l~~~~~l~~~~~-~~--~--~~~L~~L~l~~c~ 334 (355)
....+|.|++|.+-+++ +++-.. .. + +|+|+.||+.+-.
T Consensus 107 ~pLa~~p~L~~Ltll~Np-v~~k~~YR~yvl~klp~l~~LDF~kVt 151 (233)
T KOG1644|consen 107 DPLASCPKLEYLTLLGNP-VEHKKNYRLYVLYKLPSLRTLDFQKVT 151 (233)
T ss_pred chhccCCccceeeecCCc-hhcccCceeEEEEecCcceEeehhhhh
Confidence 34789999999999984 554432 11 1 6999999987654
No 60
>KOG2123 consensus Uncharacterized conserved protein [Function unknown]
Probab=96.76 E-value=6.1e-05 Score=64.15 Aligned_cols=99 Identities=19% Similarity=0.162 Sum_probs=72.1
Q ss_pred cccccEEEecCCCccchhccccccchhccccccCCCCCcccEEEEccCcchhchhhhccCCCCCcEEEeeccCCcCccc-
Q 018478 64 SYLLEELCISSCRSLTSIFSKNELSATLESLEVGNLPPSLKSLRVQGCSKLESIAETLDNSTSLETIHIFYCENMKILP- 142 (355)
Q Consensus 64 ~~~L~~L~l~~~~~l~~~~~~n~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~- 142 (355)
+.+.+.|++.+| .+.++ .....++.|+.|.|+.|. ++.+.+ +.+|++|++|++..|. +..+.
T Consensus 18 l~~vkKLNcwg~-~L~DI-------------sic~kMp~lEVLsLSvNk-IssL~p-l~rCtrLkElYLRkN~-I~sldE 80 (388)
T KOG2123|consen 18 LENVKKLNCWGC-GLDDI-------------SICEKMPLLEVLSLSVNK-ISSLAP-LQRCTRLKELYLRKNC-IESLDE 80 (388)
T ss_pred HHHhhhhcccCC-CccHH-------------HHHHhcccceeEEeeccc-cccchh-HHHHHHHHHHHHHhcc-cccHHH
Confidence 667888888887 56676 555566889999999887 776643 6679999999999877 55542
Q ss_pred -ccccCCCCCceEeccccCCCcCCCC-----CCCCCCCcceEE
Q 018478 143 -SGLHNLRQLQEISIEGCGNLESFPE-----GGLPCAKLKEVV 179 (355)
Q Consensus 143 -~~~~~l~~L~~L~l~~~~~l~~~~~-----~~~~~~~L~~L~ 179 (355)
..+.++++|+.|.+..|+....-+. .+..++||++|+
T Consensus 81 L~YLknlpsLr~LWL~ENPCc~~ag~nYR~~VLR~LPnLkKLD 123 (388)
T KOG2123|consen 81 LEYLKNLPSLRTLWLDENPCCGEAGQNYRRKVLRVLPNLKKLD 123 (388)
T ss_pred HHHHhcCchhhhHhhccCCcccccchhHHHHHHHHcccchhcc
Confidence 3567789999999988876654433 223367788776
No 61
>KOG1859 consensus Leucine-rich repeat proteins [General function prediction only]
Probab=96.56 E-value=0.00015 Score=69.57 Aligned_cols=189 Identities=22% Similarity=0.278 Sum_probs=111.1
Q ss_pred CCCCcEEEeeccCCcCcc-cccccCCCCCceEeccccCCCcCCCCCCCCC-CCcceEEEccccCcCcccccc-------c
Q 018478 124 STSLETIHIFYCENMKIL-PSGLHNLRQLQEISIEGCGNLESFPEGGLPC-AKLKEVVIRWCGRLEALPKGL-------H 194 (355)
Q Consensus 124 l~~L~~L~l~~~~~~~~~-~~~~~~l~~L~~L~l~~~~~l~~~~~~~~~~-~~L~~L~l~~~~~~~~~p~~l-------~ 194 (355)
+++++.+.+-.-+.-.-. |-.+..+.+|+.|.+.+|+ +.. ..++..+ ..|++|.=++ .++.+...| .
T Consensus 83 lqkt~~lkl~~~pa~~pt~pi~ifpF~sLr~LElrg~~-L~~-~~GL~~lr~qLe~LIC~~--Sl~Al~~v~ascggd~~ 158 (1096)
T KOG1859|consen 83 LQKTKVLKLLPSPARDPTEPISIFPFRSLRVLELRGCD-LST-AKGLQELRHQLEKLICHN--SLDALRHVFASCGGDIS 158 (1096)
T ss_pred HhhheeeeecccCCCCCCCCceeccccceeeEEecCcc-hhh-hhhhHHHHHhhhhhhhhc--cHHHHHHHHHHhccccc
Confidence 455556655443322111 4456667888899888874 322 1222221 2444443211 111111111 0
Q ss_pred C---CCCCceEEEeecCcCC----CCCCCCccEEEecCCcchhhhhhhhcccCCCCCccceeEecccCCcccccCccccc
Q 018478 195 N---LKSLQKLTIGKGGLEE----DGLPTNLHSLDIRGNMEIWKSMIEWGQGFHRFSSLRELRIEGCDDDMVSFPPEDIR 267 (355)
Q Consensus 195 ~---~~~L~~L~l~~~~i~~----~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~ 267 (355)
+ .-.|.+.+.+.+.+.. ..+.+.++.|++++|...+... +..++.|++||+++ +.+..+|.-.
T Consensus 159 ns~~Wn~L~~a~fsyN~L~~mD~SLqll~ale~LnLshNk~~~v~~------Lr~l~~LkhLDlsy--N~L~~vp~l~-- 228 (1096)
T KOG1859|consen 159 NSPVWNKLATASFSYNRLVLMDESLQLLPALESLNLSHNKFTKVDN------LRRLPKLKHLDLSY--NCLRHVPQLS-- 228 (1096)
T ss_pred cchhhhhHhhhhcchhhHHhHHHHHHHHHHhhhhccchhhhhhhHH------HHhccccccccccc--chhccccccc--
Confidence 0 1134444444333332 3456899999999987554332 77899999999998 5566666422
Q ss_pred cCCCCCCCCccceEEeccCCCcccccccCCCCCCccEEeeCCCCCCcccCCCC---CCCCccEEEecCCc
Q 018478 268 MGTTLPLPTSLTSLAIFSFPNLERLSSSIVDLQNLTSLYLVGCPKLKYFPEKG---LPSSLLELWIGGCP 334 (355)
Q Consensus 268 ~~~~~~~~~~L~~L~l~~~~~l~~l~~~~~~~~~L~~L~l~~~~~l~~~~~~~---~~~~L~~L~l~~c~ 334 (355)
..-..|+.|.+++ +.++.+-. +.++.+|..|++++| -|.....-. .+..|+.|++.++|
T Consensus 229 -----~~gc~L~~L~lrn-N~l~tL~g-ie~LksL~~LDlsyN-ll~~hseL~pLwsLs~L~~L~LeGNP 290 (1096)
T KOG1859|consen 229 -----MVGCKLQLLNLRN-NALTTLRG-IENLKSLYGLDLSYN-LLSEHSELEPLWSLSSLIVLWLEGNP 290 (1096)
T ss_pred -----hhhhhheeeeecc-cHHHhhhh-HHhhhhhhccchhHh-hhhcchhhhHHHHHHHHHHHhhcCCc
Confidence 2234699999998 77777643 578999999999987 344432211 25788999999887
No 62
>KOG4579 consensus Leucine-rich repeat (LRR) protein associated with apoptosis in muscle tissue [General function prediction only]
Probab=96.42 E-value=0.0003 Score=53.71 Aligned_cols=78 Identities=14% Similarity=0.182 Sum_probs=46.5
Q ss_pred cccEEEEccCcchhchhhhcc-CCCCCcEEEeeccCCcCcccccccCCCCCceEeccccCCCcCCCCCCCCCCCcceEEE
Q 018478 102 SLKSLRVQGCSKLESIAETLD-NSTSLETIHIFYCENMKILPSGLHNLRQLQEISIEGCGNLESFPEGGLPCAKLKEVVI 180 (355)
Q Consensus 102 ~L~~L~l~~~~~~~~~~~~~~-~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~l~~~~~~~~~~~~L~~L~l 180 (355)
.|+..++++|. ++.+|+.|. ..+.++.|++.+|. +.++|.++..++.|+.++++.| .+..+|+.+.++.++-.|+.
T Consensus 54 el~~i~ls~N~-fk~fp~kft~kf~t~t~lNl~~ne-isdvPeE~Aam~aLr~lNl~~N-~l~~~p~vi~~L~~l~~Lds 130 (177)
T KOG4579|consen 54 ELTKISLSDNG-FKKFPKKFTIKFPTATTLNLANNE-ISDVPEELAAMPALRSLNLRFN-PLNAEPRVIAPLIKLDMLDS 130 (177)
T ss_pred eEEEEecccch-hhhCCHHHhhccchhhhhhcchhh-hhhchHHHhhhHHhhhcccccC-ccccchHHHHHHHhHHHhcC
Confidence 56666666665 565655443 34466666666655 6666666666666666666665 45555655555555555555
Q ss_pred cc
Q 018478 181 RW 182 (355)
Q Consensus 181 ~~ 182 (355)
-+
T Consensus 131 ~~ 132 (177)
T KOG4579|consen 131 PE 132 (177)
T ss_pred CC
Confidence 44
No 63
>KOG4579 consensus Leucine-rich repeat (LRR) protein associated with apoptosis in muscle tissue [General function prediction only]
Probab=95.89 E-value=0.00065 Score=51.90 Aligned_cols=100 Identities=21% Similarity=0.291 Sum_probs=75.6
Q ss_pred cccEEEEccCcchhchh---hhccCCCCCcEEEeeccCCcCcccccccC-CCCCceEeccccCCCcCCCCCCCCCCCcce
Q 018478 102 SLKSLRVQGCSKLESIA---ETLDNSTSLETIHIFYCENMKILPSGLHN-LRQLQEISIEGCGNLESFPEGGLPCAKLKE 177 (355)
Q Consensus 102 ~L~~L~l~~~~~~~~~~---~~~~~l~~L~~L~l~~~~~~~~~~~~~~~-l~~L~~L~l~~~~~l~~~~~~~~~~~~L~~ 177 (355)
.+..++++.|. +..++ ..+.+-..|...++++|. +..+|+.+.. ++..+.+++++| .+.++|+.+..++.|+.
T Consensus 28 E~h~ldLssc~-lm~i~davy~l~~~~el~~i~ls~N~-fk~fp~kft~kf~t~t~lNl~~n-eisdvPeE~Aam~aLr~ 104 (177)
T KOG4579|consen 28 ELHFLDLSSCQ-LMYIADAVYMLSKGYELTKISLSDNG-FKKFPKKFTIKFPTATTLNLANN-EISDVPEELAAMPALRS 104 (177)
T ss_pred Hhhhcccccch-hhHHHHHHHHHhCCceEEEEecccch-hhhCCHHHhhccchhhhhhcchh-hhhhchHHHhhhHHhhh
Confidence 46788999987 55444 445667788888999988 7777765543 557899999986 78899988888999999
Q ss_pred EEEccccCcCcccccccCCCCCceEEEe
Q 018478 178 VVIRWCGRLEALPKGLHNLKSLQKLTIG 205 (355)
Q Consensus 178 L~l~~~~~~~~~p~~l~~~~~L~~L~l~ 205 (355)
+.+..| .+...|..+..+.++..|+..
T Consensus 105 lNl~~N-~l~~~p~vi~~L~~l~~Lds~ 131 (177)
T KOG4579|consen 105 LNLRFN-PLNAEPRVIAPLIKLDMLDSP 131 (177)
T ss_pred cccccC-ccccchHHHHHHHhHHHhcCC
Confidence 999985 455667777667776666554
No 64
>KOG2123 consensus Uncharacterized conserved protein [Function unknown]
Probab=95.51 E-value=0.00095 Score=57.10 Aligned_cols=40 Identities=28% Similarity=0.220 Sum_probs=22.7
Q ss_pred CCCCcccEEEEccCcchhchh--hhccCCCCCcEEEeeccCCc
Q 018478 98 NLPPSLKSLRVQGCSKLESIA--ETLDNSTSLETIHIFYCENM 138 (355)
Q Consensus 98 ~~~~~L~~L~l~~~~~~~~~~--~~~~~l~~L~~L~l~~~~~~ 138 (355)
..+..|+.|+|..|. +..+. .++.++|+|+.|.+..|+-.
T Consensus 60 ~rCtrLkElYLRkN~-I~sldEL~YLknlpsLr~LWL~ENPCc 101 (388)
T KOG2123|consen 60 QRCTRLKELYLRKNC-IESLDELEYLKNLPSLRTLWLDENPCC 101 (388)
T ss_pred HHHHHHHHHHHHhcc-cccHHHHHHHhcCchhhhHhhccCCcc
Confidence 344556666666655 44433 34556666666666666643
No 65
>COG5238 RNA1 Ran GTPase-activating protein (RanGAP) involved in mRNA processing and transport [Signal transduction mechanisms / RNA processing and modification]
Probab=95.45 E-value=0.0069 Score=51.83 Aligned_cols=151 Identities=17% Similarity=0.167 Sum_probs=83.9
Q ss_pred CCcccEEEEccCcchhc----hhhhccCCCCCcEEEeeccC--Cc-C-------cccccccCCCCCceEeccccCCCcCC
Q 018478 100 PPSLKSLRVQGCSKLES----IAETLDNSTSLETIHIFYCE--NM-K-------ILPSGLHNLRQLQEISIEGCGNLESF 165 (355)
Q Consensus 100 ~~~L~~L~l~~~~~~~~----~~~~~~~l~~L~~L~l~~~~--~~-~-------~~~~~~~~l~~L~~L~l~~~~~l~~~ 165 (355)
+..+..+++++|...+. +...+.+-.+|+..++++-- .. + .+.+.+..||.|+..+++.|-.-..+
T Consensus 29 ~d~~~evdLSGNtigtEA~e~l~~~ia~~~~L~vvnfsd~ftgr~kde~~~~L~~Ll~aLlkcp~l~~v~LSDNAfg~~~ 108 (388)
T COG5238 29 MDELVEVDLSGNTIGTEAMEELCNVIANVRNLRVVNFSDAFTGRDKDELYSNLVMLLKALLKCPRLQKVDLSDNAFGSEF 108 (388)
T ss_pred hcceeEEeccCCcccHHHHHHHHHHHhhhcceeEeehhhhhhcccHHHHHHHHHHHHHHHhcCCcceeeeccccccCccc
Confidence 46789999999984443 33444555677777766522 11 1 12345667899999999987544444
Q ss_pred CC----CCCCCCCcceEEEccccCcCcccc-----c---------ccCCCCCceEEEeecCcCCCC---------CCCCc
Q 018478 166 PE----GGLPCAKLKEVVIRWCGRLEALPK-----G---------LHNLKSLQKLTIGKGGLEEDG---------LPTNL 218 (355)
Q Consensus 166 ~~----~~~~~~~L~~L~l~~~~~~~~~p~-----~---------l~~~~~L~~L~l~~~~i~~~~---------~~~~L 218 (355)
|+ .+.+-+.|++|.+++| .+..+.. + ...-|.|++...+.+.+.... .-.+|
T Consensus 109 ~e~L~d~is~~t~l~HL~l~Nn-GlGp~aG~rigkal~~la~nKKaa~kp~Le~vicgrNRlengs~~~~a~~l~sh~~l 187 (388)
T COG5238 109 PEELGDLISSSTDLVHLKLNNN-GLGPIAGGRIGKALFHLAYNKKAADKPKLEVVICGRNRLENGSKELSAALLESHENL 187 (388)
T ss_pred chHHHHHHhcCCCceeEEeecC-CCCccchhHHHHHHHHHHHHhhhccCCCceEEEeccchhccCcHHHHHHHHHhhcCc
Confidence 43 3445688999999885 3332211 1 123345666666533333221 11356
Q ss_pred cEEEecCCcchhh---hhhhhcccCCCCCccceeEecc
Q 018478 219 HSLDIRGNMEIWK---SMIEWGQGFHRFSSLRELRIEG 253 (355)
Q Consensus 219 ~~L~l~~~~~~~~---~~~~~~~~~~~l~~L~~L~l~~ 253 (355)
+.+.+..|..-.. .....+ +..+.+|+.|++..
T Consensus 188 k~vki~qNgIrpegv~~L~~~g--l~y~~~LevLDlqD 223 (388)
T COG5238 188 KEVKIQQNGIRPEGVTMLAFLG--LFYSHSLEVLDLQD 223 (388)
T ss_pred eeEEeeecCcCcchhHHHHHHH--HHHhCcceeeeccc
Confidence 6666665542211 011112 44556677777765
No 66
>PF13306 LRR_5: Leucine rich repeats (6 copies); PDB: 3ZYJ_A 3V47_B 3V44_A 3ZYN_A 3ZYO_A 3SB4_A.
Probab=94.97 E-value=0.15 Score=38.87 Aligned_cols=116 Identities=25% Similarity=0.348 Sum_probs=48.7
Q ss_pred cccccccccEEEecCCCccchhccccccchhccccccC--CCCCcccEEEEccCcchhchh-hhccCCCCCcEEEeeccC
Q 018478 60 RRYTSYLLEELCISSCRSLTSIFSKNELSATLESLEVG--NLPPSLKSLRVQGCSKLESIA-ETLDNSTSLETIHIFYCE 136 (355)
Q Consensus 60 ~~~~~~~L~~L~l~~~~~l~~~~~~n~~~~~~~~~~~~--~~~~~L~~L~l~~~~~~~~~~-~~~~~l~~L~~L~l~~~~ 136 (355)
+|..+++|+.+.+.. .++.+ ... ..+++|+.+.+... +..++ ..+..+++++.+.+.. .
T Consensus 7 ~F~~~~~l~~i~~~~--~~~~I-------------~~~~F~~~~~l~~i~~~~~--~~~i~~~~F~~~~~l~~i~~~~-~ 68 (129)
T PF13306_consen 7 AFYNCSNLESITFPN--TIKKI-------------GENAFSNCTSLKSINFPNN--LTSIGDNAFSNCKSLESITFPN-N 68 (129)
T ss_dssp TTTT-TT--EEEETS--T--EE--------------TTTTTT-TT-SEEEESST--TSCE-TTTTTT-TT-EEEEETS-T
T ss_pred HHhCCCCCCEEEECC--CeeEe-------------Chhhccccccccccccccc--ccccceeeeecccccccccccc-c
Confidence 466677777777763 34444 222 23356777777653 45444 3455666777777754 2
Q ss_pred CcCccc-ccccCCCCCceEeccccCCCcCCCC-CCCCCCCcceEEEccccCcCccc-ccccCCCCC
Q 018478 137 NMKILP-SGLHNLRQLQEISIEGCGNLESFPE-GGLPCAKLKEVVIRWCGRLEALP-KGLHNLKSL 199 (355)
Q Consensus 137 ~~~~~~-~~~~~l~~L~~L~l~~~~~l~~~~~-~~~~~~~L~~L~l~~~~~~~~~p-~~l~~~~~L 199 (355)
+..++ ..+..+++|+.+.+.. .+..++. .+..+ +|+.+.+.+ .+..++ ..+.++++|
T Consensus 69 -~~~i~~~~F~~~~~l~~i~~~~--~~~~i~~~~f~~~-~l~~i~~~~--~~~~i~~~~F~~~~~l 128 (129)
T PF13306_consen 69 -LKSIGDNAFSNCTNLKNIDIPS--NITEIGSSSFSNC-NLKEINIPS--NITKIEENAFKNCTKL 128 (129)
T ss_dssp -T-EE-TTTTTT-TTECEEEETT--T-BEEHTTTTTT--T--EEE-TT--B-SS----GGG-----
T ss_pred -ccccccccccccccccccccCc--cccEEchhhhcCC-CceEEEECC--CccEECCccccccccC
Confidence 33333 3445577777777754 2444433 33344 777777654 222333 355555554
No 67
>COG5238 RNA1 Ran GTPase-activating protein (RanGAP) involved in mRNA processing and transport [Signal transduction mechanisms / RNA processing and modification]
Probab=94.88 E-value=0.072 Score=45.81 Aligned_cols=184 Identities=17% Similarity=0.142 Sum_probs=108.6
Q ss_pred cccccccEEEecCCCccchhccccccchhccccccCCCCCcccEEEEccCcc----------hhchhhhccCCCCCcEEE
Q 018478 62 YTSYLLEELCISSCRSLTSIFSKNELSATLESLEVGNLPPSLKSLRVQGCSK----------LESIAETLDNSTSLETIH 131 (355)
Q Consensus 62 ~~~~~L~~L~l~~~~~l~~~~~~n~~~~~~~~~~~~~~~~~L~~L~l~~~~~----------~~~~~~~~~~l~~L~~L~ 131 (355)
..+..++++++++...-+.. +..... . ...-.+|+...+++-.- +.-+.+.+-+||+|+..+
T Consensus 27 ~~~d~~~evdLSGNtigtEA-----~e~l~~--~-ia~~~~L~vvnfsd~ftgr~kde~~~~L~~Ll~aLlkcp~l~~v~ 98 (388)
T COG5238 27 EMMDELVEVDLSGNTIGTEA-----MEELCN--V-IANVRNLRVVNFSDAFTGRDKDELYSNLVMLLKALLKCPRLQKVD 98 (388)
T ss_pred HhhcceeEEeccCCcccHHH-----HHHHHH--H-HhhhcceeEeehhhhhhcccHHHHHHHHHHHHHHHhcCCcceeee
Confidence 33888999999986544433 111110 0 11125677777765321 111224456799999999
Q ss_pred eeccCCcCccc----ccccCCCCCceEeccccCCCcCCCC--------------CCCCCCCcceEEEccccCcCcccc--
Q 018478 132 IFYCENMKILP----SGLHNLRQLQEISIEGCGNLESFPE--------------GGLPCAKLKEVVIRWCGRLEALPK-- 191 (355)
Q Consensus 132 l~~~~~~~~~~----~~~~~l~~L~~L~l~~~~~l~~~~~--------------~~~~~~~L~~L~l~~~~~~~~~p~-- 191 (355)
+++|..-...| +.+..-+.|..|.+.+| .+..+.- ....-|.|+.+....| ++...|.
T Consensus 99 LSDNAfg~~~~e~L~d~is~~t~l~HL~l~Nn-GlGp~aG~rigkal~~la~nKKaa~kp~Le~vicgrN-Rlengs~~~ 176 (388)
T COG5238 99 LSDNAFGSEFPEELGDLISSSTDLVHLKLNNN-GLGPIAGGRIGKALFHLAYNKKAADKPKLEVVICGRN-RLENGSKEL 176 (388)
T ss_pred ccccccCcccchHHHHHHhcCCCceeEEeecC-CCCccchhHHHHHHHHHHHHhhhccCCCceEEEeccc-hhccCcHHH
Confidence 99988554444 34556788999999887 4433211 1222467888877764 4444332
Q ss_pred ---cccCCCCCceEEEeecCcCCC----------CCCCCccEEEecCCcchhhhhhhhcccCCCCCccceeEecccCC
Q 018478 192 ---GLHNLKSLQKLTIGKGGLEED----------GLPTNLHSLDIRGNMEIWKSMIEWGQGFHRFSSLRELRIEGCDD 256 (355)
Q Consensus 192 ---~l~~~~~L~~L~l~~~~i~~~----------~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~ 256 (355)
.+..-..|+++.+..+.|... ..+.+|+.||+.+|.............+...+.|+.|.+.. |-
T Consensus 177 ~a~~l~sh~~lk~vki~qNgIrpegv~~L~~~gl~y~~~LevLDlqDNtft~~gS~~La~al~~W~~lrEL~lnD-Cl 253 (388)
T COG5238 177 SAALLESHENLKEVKIQQNGIRPEGVTMLAFLGLFYSHSLEVLDLQDNTFTLEGSRYLADALCEWNLLRELRLND-CL 253 (388)
T ss_pred HHHHHHhhcCceeEEeeecCcCcchhHHHHHHHHHHhCcceeeeccccchhhhhHHHHHHHhcccchhhhccccc-hh
Confidence 233335889998886555543 24589999999998644322221111144456688888877 53
No 68
>PF13306 LRR_5: Leucine rich repeats (6 copies); PDB: 3ZYJ_A 3V47_B 3V44_A 3ZYN_A 3ZYO_A 3SB4_A.
Probab=94.32 E-value=0.37 Score=36.64 Aligned_cols=97 Identities=25% Similarity=0.309 Sum_probs=39.0
Q ss_pred CCcceEecccCccccccccccCcCCCCCCCccccccccccEEEecCCCccchhccccccchhccccccC--CCCCcccEE
Q 018478 29 RSLKRLDIQCCSNIRTLTMEEGIQSSSSSSSRRYTSYLLEELCISSCRSLTSIFSKNELSATLESLEVG--NLPPSLKSL 106 (355)
Q Consensus 29 ~~L~~L~l~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~~~~~n~~~~~~~~~~~~--~~~~~L~~L 106 (355)
.+|+.+.+.. .++.++... |..+++|+.+.+.+ .++.+ ... ..+++++.+
T Consensus 12 ~~l~~i~~~~--~~~~I~~~~-----------F~~~~~l~~i~~~~--~~~~i-------------~~~~F~~~~~l~~i 63 (129)
T PF13306_consen 12 SNLESITFPN--TIKKIGENA-----------FSNCTSLKSINFPN--NLTSI-------------GDNAFSNCKSLESI 63 (129)
T ss_dssp TT--EEEETS--T--EE-TTT-----------TTT-TT-SEEEESS--TTSCE--------------TTTTTT-TT-EEE
T ss_pred CCCCEEEECC--CeeEeChhh-----------cccccccccccccc--ccccc-------------ceeeeecccccccc
Confidence 3566666553 345555443 45566666666654 23443 221 222356666
Q ss_pred EEccCcchhchh-hhccCCCCCcEEEeeccCCcCccc-ccccCCCCCceEeccc
Q 018478 107 RVQGCSKLESIA-ETLDNSTSLETIHIFYCENMKILP-SGLHNLRQLQEISIEG 158 (355)
Q Consensus 107 ~l~~~~~~~~~~-~~~~~l~~L~~L~l~~~~~~~~~~-~~~~~l~~L~~L~l~~ 158 (355)
.+.+ .+..++ ..+..+++|+.+.+..+ +..++ ..+.++ +|+.+.+..
T Consensus 64 ~~~~--~~~~i~~~~F~~~~~l~~i~~~~~--~~~i~~~~f~~~-~l~~i~~~~ 112 (129)
T PF13306_consen 64 TFPN--NLKSIGDNAFSNCTNLKNIDIPSN--ITEIGSSSFSNC-NLKEINIPS 112 (129)
T ss_dssp EETS--TT-EE-TTTTTT-TTECEEEETTT---BEEHTTTTTT--T--EEE-TT
T ss_pred cccc--cccccccccccccccccccccCcc--ccEEchhhhcCC-CceEEEECC
Confidence 6654 233333 23444667777766542 33333 234444 666666653
No 69
>PF00560 LRR_1: Leucine Rich Repeat; InterPro: IPR001611 Leucine-rich repeats (LRR) consist of 2-45 motifs of 20-30 amino acids in length that generally folds into an arc or horseshoe shape []. LRRs occur in proteins ranging from viruses to eukaryotes, and appear to provide a structural framework for the formation of protein-protein interactions [, ].Proteins containing LRRs include tyrosine kinase receptors, cell-adhesion molecules, virulence factors, and extracellular matrix-binding glycoproteins, and are involved in a variety of biological processes, including signal transduction, cell adhesion, DNA repair, recombination, transcription, RNA processing, disease resistance, apoptosis, and the immune response []. Sequence analyses of LRR proteins suggested the existence of several different subfamilies of LRRs. The significance of this classification is that repeats from different subfamilies never occur simultaneously and have most probably evolved independently. It is, however, now clear that all major classes of LRR have curved horseshoe structures with a parallel beta sheet on the concave side and mostly helical elements on the convex side. At least six families of LRR proteins, characterised by different lengths and consensus sequences of the repeats, have been identified. Eleven-residue segments of the LRRs (LxxLxLxxN/CxL), corresponding to the beta-strand and adjacent loop regions, are conserved in LRR proteins, whereas the remaining parts of the repeats (herein termed variable) may be very different. Despite the differences, each of the variable parts contains two half-turns at both ends and a "linear" segment (as the chain follows a linear path overall), usually formed by a helix, in the middle. The concave face and the adjacent loops are the most common protein interaction surfaces on LRR proteins. 3D structure of some LRR proteins-ligand complexes show that the concave surface of LRR domain is ideal for interaction with alpha-helix, thus supporting earlier conclusions that the elongated and curved LRR structure provides an outstanding framework for achieving diverse protein-protein interactions []. Molecular modeling suggests that the conserved pattern LxxLxL, which is shorter than the previously proposed LxxLxLxxN/CxL is sufficient to impart the characteristic horseshoe curvature to proteins with 20- to 30-residue repeats []. ; GO: 0005515 protein binding; PDB: 4ECO_B 2A0Z_A 3ULU_A 1ZIW_A 3ULV_A 1DCE_C 1LTX_A 3J0A_B 3A79_B 4FCG_A ....
Probab=94.26 E-value=0.027 Score=28.47 Aligned_cols=20 Identities=30% Similarity=0.504 Sum_probs=11.7
Q ss_pred cccEEEEccCcchhchhhhcc
Q 018478 102 SLKSLRVQGCSKLESIAETLD 122 (355)
Q Consensus 102 ~L~~L~l~~~~~~~~~~~~~~ 122 (355)
+|++|++++|. ++.+|+.++
T Consensus 1 ~L~~Ldls~n~-l~~ip~~~~ 20 (22)
T PF00560_consen 1 NLEYLDLSGNN-LTSIPSSFS 20 (22)
T ss_dssp TESEEEETSSE-ESEEGTTTT
T ss_pred CccEEECCCCc-CEeCChhhc
Confidence 35666666664 556665443
No 70
>KOG2739 consensus Leucine-rich acidic nuclear protein [Cell cycle control, cell division, chromosome partitioning; General function prediction only]
Probab=93.79 E-value=0.037 Score=47.14 Aligned_cols=60 Identities=18% Similarity=0.289 Sum_probs=30.8
Q ss_pred CCCcccEEEEccC--cchhchhhhccCCCCCcEEEeeccCCcCcc--cccccCCCCCceEecccc
Q 018478 99 LPPSLKSLRVQGC--SKLESIAETLDNSTSLETIHIFYCENMKIL--PSGLHNLRQLQEISIEGC 159 (355)
Q Consensus 99 ~~~~L~~L~l~~~--~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~--~~~~~~l~~L~~L~l~~~ 159 (355)
.+++|++|.+++| .-...++.-...+|+|++|+++.|. +..+ ...+..+.+|..|++.+|
T Consensus 63 ~Lp~LkkL~lsdn~~~~~~~l~vl~e~~P~l~~l~ls~Nk-i~~lstl~pl~~l~nL~~Ldl~n~ 126 (260)
T KOG2739|consen 63 KLPKLKKLELSDNYRRVSGGLEVLAEKAPNLKVLNLSGNK-IKDLSTLRPLKELENLKSLDLFNC 126 (260)
T ss_pred CcchhhhhcccCCcccccccceehhhhCCceeEEeecCCc-cccccccchhhhhcchhhhhcccC
Confidence 3456777777766 3222333333445777777777665 2211 012334455555555555
No 71
>PF13504 LRR_7: Leucine rich repeat; PDB: 3OJA_B 3G06_A 1OOK_G 1QYY_G 1SQ0_B 1P9A_G 1GWB_A 1P8V_A 1M0Z_A 1U0N_D ....
Probab=93.49 E-value=0.058 Score=25.32 Aligned_cols=15 Identities=33% Similarity=0.419 Sum_probs=6.6
Q ss_pred CccEEeeCCCCCCccc
Q 018478 301 NLTSLYLVGCPKLKYF 316 (355)
Q Consensus 301 ~L~~L~l~~~~~l~~~ 316 (355)
+|+.|++++| +++++
T Consensus 2 ~L~~L~l~~n-~L~~l 16 (17)
T PF13504_consen 2 NLRTLDLSNN-RLTSL 16 (17)
T ss_dssp T-SEEEETSS---SSE
T ss_pred ccCEEECCCC-CCCCC
Confidence 4555556555 35544
No 72
>KOG3864 consensus Uncharacterized conserved protein [Function unknown]
Probab=93.15 E-value=0.013 Score=47.92 Aligned_cols=65 Identities=18% Similarity=0.206 Sum_probs=36.5
Q ss_pred CCCCccEEeecccccCccccc---CccCCCcceEecccCccccccccccCcCCCCCCCccccccccccEEEecCCCccc
Q 018478 4 TNSSLEILEIWSCRSLTYLAA---VQLPRSLKRLDIQCCSNIRTLTMEEGIQSSSSSSSRRYTSYLLEELCISSCRSLT 79 (355)
Q Consensus 4 ~~~~L~~L~l~~~~~l~~l~~---~~~~~~L~~L~l~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~l~ 79 (355)
.++.++.|.+.+|..+.++.- .+..++|+.|+|++|+.|++-.... +..+++|+.|.+...+.+.
T Consensus 123 ~l~~i~~l~l~~ck~~dD~~L~~l~~~~~~L~~L~lsgC~rIT~~GL~~-----------L~~lknLr~L~l~~l~~v~ 190 (221)
T KOG3864|consen 123 DLRSIKSLSLANCKYFDDWCLERLGGLAPSLQDLDLSGCPRITDGGLAC-----------LLKLKNLRRLHLYDLPYVA 190 (221)
T ss_pred ccchhhhheeccccchhhHHHHHhcccccchheeeccCCCeechhHHHH-----------HHHhhhhHHHHhcCchhhh
Confidence 345666677777765554432 1133777777777777666543322 2336666666666544433
No 73
>KOG3864 consensus Uncharacterized conserved protein [Function unknown]
Probab=92.10 E-value=0.026 Score=46.22 Aligned_cols=41 Identities=17% Similarity=0.100 Sum_probs=18.0
Q ss_pred CccEEEecCCcchhhhhhhhcccCCCCCccceeEecccCCcccc
Q 018478 217 NLHSLDIRGNMEIWKSMIEWGQGFHRFSSLRELRIEGCDDDMVS 260 (355)
Q Consensus 217 ~L~~L~l~~~~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~ 260 (355)
.++.|.+.+|..+.+...+.. -+..++|+.|++++ |.++++
T Consensus 126 ~i~~l~l~~ck~~dD~~L~~l--~~~~~~L~~L~lsg-C~rIT~ 166 (221)
T KOG3864|consen 126 SIKSLSLANCKYFDDWCLERL--GGLAPSLQDLDLSG-CPRITD 166 (221)
T ss_pred hhhhheeccccchhhHHHHHh--cccccchheeeccC-CCeech
Confidence 334444455554444443332 22334455555554 444443
No 74
>KOG2739 consensus Leucine-rich acidic nuclear protein [Cell cycle control, cell division, chromosome partitioning; General function prediction only]
Probab=91.45 E-value=0.14 Score=43.62 Aligned_cols=105 Identities=19% Similarity=0.161 Sum_probs=60.6
Q ss_pred CCccEEEecCCcchhhhhhhhcccCCCCCccceeEecccCCcc-cccCccccccCCCCCCCCccceEEeccCCCcccccc
Q 018478 216 TNLHSLDIRGNMEIWKSMIEWGQGFHRFSSLRELRIEGCDDDM-VSFPPEDIRMGTTLPLPTSLTSLAIFSFPNLERLSS 294 (355)
Q Consensus 216 ~~L~~L~l~~~~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~-~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~l~~ 294 (355)
..|+.+++.++...+ ... +-.+++|+.|.++.+...+ ..+..- ....++|+++.+++ +.++.+..
T Consensus 43 ~~le~ls~~n~gltt-~~~-----~P~Lp~LkkL~lsdn~~~~~~~l~vl-------~e~~P~l~~l~ls~-Nki~~lst 108 (260)
T KOG2739|consen 43 VELELLSVINVGLTT-LTN-----FPKLPKLKKLELSDNYRRVSGGLEVL-------AEKAPNLKVLNLSG-NKIKDLST 108 (260)
T ss_pred cchhhhhhhccceee-ccc-----CCCcchhhhhcccCCcccccccceeh-------hhhCCceeEEeecC-Cccccccc
Confidence 355556665554332 111 5567888999998721122 111111 13347899999988 56664321
Q ss_pred --cCCCCCCccEEeeCCCCCCcccCCC-----CCCCCccEEEecCCch
Q 018478 295 --SIVDLQNLTSLYLVGCPKLKYFPEK-----GLPSSLLELWIGGCPL 335 (355)
Q Consensus 295 --~~~~~~~L~~L~l~~~~~l~~~~~~-----~~~~~L~~L~l~~c~~ 335 (355)
....+.+|..|++.+|+ .+.+..- .+.++|++|+-.++..
T Consensus 109 l~pl~~l~nL~~Ldl~n~~-~~~l~dyre~vf~ll~~L~~LD~~dv~~ 155 (260)
T KOG2739|consen 109 LRPLKELENLKSLDLFNCS-VTNLDDYREKVFLLLPSLKYLDGCDVDG 155 (260)
T ss_pred cchhhhhcchhhhhcccCC-ccccccHHHHHHHHhhhhccccccccCC
Confidence 13567788888888884 4443221 1368888888766654
No 75
>smart00367 LRR_CC Leucine-rich repeat - CC (cysteine-containing) subfamily.
Probab=86.28 E-value=0.42 Score=25.10 Aligned_cols=18 Identities=33% Similarity=0.530 Sum_probs=12.1
Q ss_pred CCCccEEEecCCchhhHh
Q 018478 322 PSSLLELWIGGCPLIEEK 339 (355)
Q Consensus 322 ~~~L~~L~l~~c~~l~~~ 339 (355)
+++|++|++++|+.+++.
T Consensus 1 c~~L~~L~l~~C~~itD~ 18 (26)
T smart00367 1 CPNLRELDLSGCTNITDE 18 (26)
T ss_pred CCCCCEeCCCCCCCcCHH
Confidence 356777777777766654
No 76
>smart00369 LRR_TYP Leucine-rich repeats, typical (most populated) subfamily.
Probab=85.12 E-value=0.62 Score=24.32 Aligned_cols=19 Identities=32% Similarity=0.389 Sum_probs=12.0
Q ss_pred CCccEEeeCCCCCCcccCCC
Q 018478 300 QNLTSLYLVGCPKLKYFPEK 319 (355)
Q Consensus 300 ~~L~~L~l~~~~~l~~~~~~ 319 (355)
++|++|++++| +|+.+|..
T Consensus 2 ~~L~~L~L~~N-~l~~lp~~ 20 (26)
T smart00369 2 PNLRELDLSNN-QLSSLPPG 20 (26)
T ss_pred CCCCEEECCCC-cCCcCCHH
Confidence 45666777666 66666653
No 77
>smart00370 LRR Leucine-rich repeats, outliers.
Probab=85.12 E-value=0.62 Score=24.32 Aligned_cols=19 Identities=32% Similarity=0.389 Sum_probs=12.0
Q ss_pred CCccEEeeCCCCCCcccCCC
Q 018478 300 QNLTSLYLVGCPKLKYFPEK 319 (355)
Q Consensus 300 ~~L~~L~l~~~~~l~~~~~~ 319 (355)
++|++|++++| +|+.+|..
T Consensus 2 ~~L~~L~L~~N-~l~~lp~~ 20 (26)
T smart00370 2 PNLRELDLSNN-QLSSLPPG 20 (26)
T ss_pred CCCCEEECCCC-cCCcCCHH
Confidence 45666777666 66666653
No 78
>smart00364 LRR_BAC Leucine-rich repeats, bacterial type.
Probab=73.67 E-value=2.2 Score=22.50 Aligned_cols=16 Identities=31% Similarity=0.403 Sum_probs=8.1
Q ss_pred ccceEEeccCCCccccc
Q 018478 277 SLTSLAIFSFPNLERLS 293 (355)
Q Consensus 277 ~L~~L~l~~~~~l~~l~ 293 (355)
+|+.|.+++ +.++.+|
T Consensus 3 ~L~~L~vs~-N~Lt~LP 18 (26)
T smart00364 3 SLKELNVSN-NQLTSLP 18 (26)
T ss_pred ccceeecCC-CccccCc
Confidence 455555554 4455554
No 79
>smart00365 LRR_SD22 Leucine-rich repeat, SDS22-like subfamily.
Probab=56.07 E-value=10 Score=19.96 Aligned_cols=17 Identities=35% Similarity=0.333 Sum_probs=11.5
Q ss_pred CCccEEeeCCCCCCcccC
Q 018478 300 QNLTSLYLVGCPKLKYFP 317 (355)
Q Consensus 300 ~~L~~L~l~~~~~l~~~~ 317 (355)
.+|+.|++++| +|+.+.
T Consensus 2 ~~L~~L~L~~N-kI~~IE 18 (26)
T smart00365 2 TNLEELDLSQN-KIKKIE 18 (26)
T ss_pred CccCEEECCCC-ccceec
Confidence 46777777776 666653
No 80
>PF05725 FNIP: FNIP Repeat; InterPro: IPR008615 This repeat is approximately 22 residues long and is only found in Dictyostelium discoideum (Slime mould). It appears to be related to IPR001611 from INTERPRO. The alignment consists of two tandem repeats. It is termed the FNIP repeat after the pattern of conserved residues.
Probab=52.08 E-value=33 Score=20.45 Aligned_cols=15 Identities=40% Similarity=0.443 Sum_probs=8.3
Q ss_pred CCCCCCCccEEEecC
Q 018478 318 EKGLPSSLLELWIGG 332 (355)
Q Consensus 318 ~~~~~~~L~~L~l~~ 332 (355)
...+|++|++|.+..
T Consensus 29 ~~~lP~sl~~L~fg~ 43 (44)
T PF05725_consen 29 PGSLPNSLKSLSFGY 43 (44)
T ss_pred CCccCCCceEEEeeC
Confidence 334566666666543
No 81
>KOG0473 consensus Leucine-rich repeat protein [Function unknown]
Probab=46.68 E-value=0.75 Score=38.88 Aligned_cols=83 Identities=13% Similarity=0.092 Sum_probs=59.9
Q ss_pred CCCCccEEEecCCcchhhhhhhhcccCCCCCccceeEecccCCcccccCccccccCCCCCCCCccceEEeccCCCccccc
Q 018478 214 LPTNLHSLDIRGNMEIWKSMIEWGQGFHRFSSLRELRIEGCDDDMVSFPPEDIRMGTTLPLPTSLTSLAIFSFPNLERLS 293 (355)
Q Consensus 214 ~~~~L~~L~l~~~~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~l~ 293 (355)
.....+.||++.++.+.- +.+++.++.+..++++. +.+..+|.+. .....+..++... ++....|
T Consensus 40 ~~kr~tvld~~s~r~vn~-----~~n~s~~t~~~rl~~sk--nq~~~~~~d~-------~q~~e~~~~~~~~-n~~~~~p 104 (326)
T KOG0473|consen 40 SFKRVTVLDLSSNRLVNL-----GKNFSILTRLVRLDLSK--NQIKFLPKDA-------KQQRETVNAASHK-NNHSQQP 104 (326)
T ss_pred ccceeeeehhhhhHHHhh-----ccchHHHHHHHHHhccH--hhHhhChhhH-------HHHHHHHHHHhhc-cchhhCC
Confidence 345677778877764432 22256678888889987 7777778766 3444566677776 7888999
Q ss_pred ccCCCCCCccEEeeCCCC
Q 018478 294 SSIVDLQNLTSLYLVGCP 311 (355)
Q Consensus 294 ~~~~~~~~L~~L~l~~~~ 311 (355)
.++...|++++++...++
T Consensus 105 ~s~~k~~~~k~~e~k~~~ 122 (326)
T KOG0473|consen 105 KSQKKEPHPKKNEQKKTE 122 (326)
T ss_pred ccccccCCcchhhhccCc
Confidence 988999999999888764
No 82
>PF13516 LRR_6: Leucine Rich repeat; PDB: 3RGZ_A 3RJ0_A 3RIZ_A 3RGX_A 1DFJ_I 2BNH_A 3VQ1_A 3VQ2_A 2Z64_A 2OMX_A ....
Probab=45.57 E-value=25 Score=17.58 Aligned_cols=14 Identities=36% Similarity=0.501 Sum_probs=7.9
Q ss_pred CCccEEEecCCcch
Q 018478 216 TNLHSLDIRGNMEI 229 (355)
Q Consensus 216 ~~L~~L~l~~~~~~ 229 (355)
++|+.|++++|...
T Consensus 2 ~~L~~L~l~~n~i~ 15 (24)
T PF13516_consen 2 PNLETLDLSNNQIT 15 (24)
T ss_dssp TT-SEEE-TSSBEH
T ss_pred CCCCEEEccCCcCC
Confidence 46777777777633
No 83
>KOG0473 consensus Leucine-rich repeat protein [Function unknown]
Probab=41.63 E-value=0.61 Score=39.41 Aligned_cols=57 Identities=16% Similarity=0.113 Sum_probs=23.7
Q ss_pred CCCCcEEEeeccCCcCcccccccCCCCCceEeccccCCCcCCCCCCCCCCCcceEEEcc
Q 018478 124 STSLETIHIFYCENMKILPSGLHNLRQLQEISIEGCGNLESFPEGGLPCAKLKEVVIRW 182 (355)
Q Consensus 124 l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~l~~~~~~~~~~~~L~~L~l~~ 182 (355)
++.|..|+++.+. +..+|.+++....+..+....| +.+..|..+...+.++.++..+
T Consensus 64 ~t~~~rl~~sknq-~~~~~~d~~q~~e~~~~~~~~n-~~~~~p~s~~k~~~~k~~e~k~ 120 (326)
T KOG0473|consen 64 LTRLVRLDLSKNQ-IKFLPKDAKQQRETVNAASHKN-NHSQQPKSQKKEPHPKKNEQKK 120 (326)
T ss_pred HHHHHHHhccHhh-HhhChhhHHHHHHHHHHHhhcc-chhhCCccccccCCcchhhhcc
Confidence 3444444444433 4444444444433333333332 3344444444444444444443
No 84
>KOG3763 consensus mRNA export factor TAP/MEX67 [RNA processing and modification]
Probab=30.25 E-value=24 Score=33.95 Aligned_cols=34 Identities=24% Similarity=0.282 Sum_probs=19.3
Q ss_pred CCCCccEEeecccccCcccccCc----cCCCcceEeccc
Q 018478 4 TNSSLEILEIWSCRSLTYLAAVQ----LPRSLKRLDIQC 38 (355)
Q Consensus 4 ~~~~L~~L~l~~~~~l~~l~~~~----~~~~L~~L~l~~ 38 (355)
++|.+..+++++ +++.+++... ..|+|+.|+|++
T Consensus 216 n~p~i~sl~lsn-NrL~~Ld~~sslsq~apklk~L~LS~ 253 (585)
T KOG3763|consen 216 NFPEILSLSLSN-NRLYHLDALSSLSQIAPKLKTLDLSH 253 (585)
T ss_pred CCcceeeeeccc-chhhchhhhhHHHHhcchhheeeccc
Confidence 456667777764 3444443311 227777777776
No 85
>KOG3763 consensus mRNA export factor TAP/MEX67 [RNA processing and modification]
Probab=26.65 E-value=35 Score=32.91 Aligned_cols=15 Identities=20% Similarity=0.135 Sum_probs=8.0
Q ss_pred CcceEEEccccCcCc
Q 018478 174 KLKEVVIRWCGRLEA 188 (355)
Q Consensus 174 ~L~~L~l~~~~~~~~ 188 (355)
.|++|.+.||+..+.
T Consensus 271 ~Leel~l~GNPlc~t 285 (585)
T KOG3763|consen 271 PLEELVLEGNPLCTT 285 (585)
T ss_pred CHHHeeecCCccccc
Confidence 455666666554443
No 86
>smart00368 LRR_RI Leucine rich repeat, ribonuclease inhibitor type.
Probab=25.83 E-value=42 Score=17.70 Aligned_cols=12 Identities=33% Similarity=0.587 Sum_probs=8.1
Q ss_pred CcccEEEEccCc
Q 018478 101 PSLKSLRVQGCS 112 (355)
Q Consensus 101 ~~L~~L~l~~~~ 112 (355)
++|+.|++++|.
T Consensus 2 ~~L~~LdL~~N~ 13 (28)
T smart00368 2 PSLRELDLSNNK 13 (28)
T ss_pred CccCEEECCCCC
Confidence 356777777766
Done!