Query 018478
Match_columns 355
No_of_seqs 167 out of 2319
Neff 10.1
Searched_HMMs 29240
Date Mon Mar 25 15:54:03 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/018478.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/018478hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 3rgz_A Protein brassinosteroid 99.9 1.5E-25 5.1E-30 223.9 15.5 324 3-353 340-761 (768)
2 4fmz_A Internalin; leucine ric 99.9 4.1E-24 1.4E-28 194.0 21.6 188 4-227 42-232 (347)
3 3v47_A TOLL-like receptor 5B a 99.9 1.6E-23 5.3E-28 197.1 23.1 291 6-334 30-406 (455)
4 3rgz_A Protein brassinosteroid 99.9 2.9E-24 1E-28 214.6 18.9 316 5-334 293-715 (768)
5 2id5_A Lingo-1, leucine rich r 99.9 1.3E-23 4.5E-28 198.9 21.7 220 100-334 103-331 (477)
6 4ecn_A Leucine-rich repeat pro 99.9 1.7E-23 5.9E-28 209.2 23.3 300 3-335 445-839 (876)
7 4fmz_A Internalin; leucine ric 99.9 1.8E-23 6E-28 189.8 20.7 278 3-334 63-344 (347)
8 4eco_A Uncharacterized protein 99.9 1.1E-23 3.6E-28 206.2 18.7 218 101-335 353-599 (636)
9 4eco_A Uncharacterized protein 99.9 1.2E-23 4.1E-28 205.8 17.9 297 4-335 247-578 (636)
10 3t6q_A CD180 antigen; protein- 99.9 1.2E-22 4E-27 198.0 24.2 222 99-334 276-511 (606)
11 2id5_A Lingo-1, leucine rich r 99.9 2.1E-22 7.2E-27 190.6 24.2 282 9-334 14-307 (477)
12 3o6n_A APL1; leucine-rich repe 99.9 4.2E-23 1.4E-27 190.4 18.6 282 5-335 44-351 (390)
13 2z7x_B TOLL-like receptor 1, v 99.9 2.4E-22 8.2E-27 192.2 23.8 150 171-335 322-480 (520)
14 3a79_B TLR6, VLRB.59, TOLL-lik 99.9 2.2E-22 7.4E-27 194.3 23.6 149 172-335 352-509 (562)
15 3t6q_A CD180 antigen; protein- 99.9 8.1E-23 2.8E-27 199.1 18.3 290 7-335 255-559 (606)
16 3v47_A TOLL-like receptor 5B a 99.9 4.7E-22 1.6E-26 187.0 22.9 281 10-334 14-382 (455)
17 2z81_A CD282 antigen, TOLL-lik 99.9 1.7E-22 5.8E-27 194.5 18.4 66 195-264 332-405 (549)
18 1o6v_A Internalin A; bacterial 99.9 6.6E-22 2.3E-26 186.6 21.5 286 5-334 45-364 (466)
19 2z81_A CD282 antigen, TOLL-lik 99.9 5.2E-22 1.8E-26 191.1 20.9 106 215-333 333-441 (549)
20 3oja_B Anopheles plasmodium-re 99.9 2.1E-22 7.2E-27 195.7 18.2 282 5-335 50-357 (597)
21 1ziw_A TOLL-like receptor 3; i 99.9 1.7E-21 5.8E-26 192.3 23.0 314 3-341 269-626 (680)
22 3vq2_A TLR4, TOLL-like recepto 99.9 8.1E-22 2.8E-26 192.0 20.1 261 29-335 285-557 (606)
23 3vq2_A TLR4, TOLL-like recepto 99.9 1.1E-21 3.7E-26 191.1 21.0 116 6-136 32-164 (606)
24 4ecn_A Leucine-rich repeat pro 99.9 6.4E-22 2.2E-26 197.9 19.4 282 29-334 448-787 (876)
25 2z7x_B TOLL-like receptor 1, v 99.9 2.1E-21 7.4E-26 185.6 22.3 122 6-159 21-148 (520)
26 4fcg_A Uncharacterized protein 99.9 4.2E-22 1.4E-26 179.2 16.1 214 102-331 82-309 (328)
27 1xku_A Decorin; proteoglycan, 99.9 3E-21 1E-25 173.9 21.1 259 29-335 31-305 (330)
28 3bz5_A Internalin-J, INLJ; leu 99.9 1.6E-21 5.5E-26 183.1 19.5 278 4-334 40-350 (457)
29 1o6v_A Internalin A; bacterial 99.9 4.4E-21 1.5E-25 181.0 22.5 286 3-335 87-387 (466)
30 3j0a_A TOLL-like receptor 5; m 99.9 4E-21 1.4E-25 193.8 23.4 84 240-333 286-372 (844)
31 4fcg_A Uncharacterized protein 99.9 7.9E-22 2.7E-26 177.5 15.9 218 64-310 80-311 (328)
32 3o6n_A APL1; leucine-rich repe 99.9 4.1E-21 1.4E-25 177.1 20.4 257 29-334 45-329 (390)
33 2z63_A TOLL-like receptor 4, v 99.9 1.9E-21 6.6E-26 187.9 19.0 111 7-136 29-160 (570)
34 2ft3_A Biglycan; proteoglycan, 99.9 4.6E-21 1.6E-25 172.8 19.3 259 29-336 33-307 (332)
35 1xku_A Decorin; proteoglycan, 99.9 9.4E-21 3.2E-25 170.7 20.5 280 7-333 32-329 (330)
36 2ft3_A Biglycan; proteoglycan, 99.9 7.3E-21 2.5E-25 171.5 19.4 278 7-334 34-331 (332)
37 3a79_B TLR6, VLRB.59, TOLL-lik 99.9 3.4E-20 1.2E-24 179.0 24.8 82 240-334 399-484 (562)
38 3bz5_A Internalin-J, INLJ; leu 99.9 2.5E-20 8.5E-25 175.0 23.1 270 3-317 61-355 (457)
39 3j0a_A TOLL-like receptor 5; m 99.9 3.2E-20 1.1E-24 187.3 25.4 298 6-333 24-391 (844)
40 1ziw_A TOLL-like receptor 3; i 99.9 2.9E-20 1E-24 183.4 23.2 185 142-334 398-595 (680)
41 2z80_A TOLL-like receptor 2, v 99.9 1.3E-20 4.5E-25 171.3 18.7 262 31-334 33-312 (353)
42 3oja_B Anopheles plasmodium-re 99.9 1.1E-20 3.7E-25 183.7 18.9 257 29-334 51-335 (597)
43 2z63_A TOLL-like receptor 4, v 99.9 1.4E-20 4.9E-25 181.8 19.6 128 193-334 392-529 (570)
44 1ogq_A PGIP-2, polygalacturona 99.9 1.4E-21 4.7E-26 174.8 11.3 245 65-337 50-305 (313)
45 3g06_A SSPH2 (leucine-rich rep 99.8 2.3E-19 7.9E-24 173.8 24.8 253 7-334 41-295 (622)
46 2z66_A Variable lymphocyte rec 99.8 2.7E-20 9.2E-25 165.8 16.7 57 101-159 78-136 (306)
47 1jl5_A Outer protein YOPM; leu 99.8 6.1E-19 2.1E-23 165.4 24.8 149 6-183 91-247 (454)
48 1ogq_A PGIP-2, polygalacturona 99.8 1.1E-20 3.6E-25 169.0 12.2 246 29-317 50-308 (313)
49 4g8a_A TOLL-like receptor 4; l 99.8 2.6E-19 8.7E-24 174.9 22.7 109 214-335 467-579 (635)
50 1jl5_A Outer protein YOPM; leu 99.8 5.6E-19 1.9E-23 165.7 23.8 277 7-335 72-369 (454)
51 2z66_A Variable lymphocyte rec 99.8 1.4E-19 4.9E-24 161.1 17.3 238 33-334 11-259 (306)
52 3zyj_A Leucine-rich repeat-con 99.8 5.5E-19 1.9E-23 165.4 21.5 196 100-311 87-290 (440)
53 3zyi_A Leucine-rich repeat-con 99.8 8.1E-19 2.8E-23 164.8 21.4 194 101-310 99-300 (452)
54 3zyi_A Leucine-rich repeat-con 99.8 1.2E-18 4.2E-23 163.6 21.2 220 95-334 70-301 (452)
55 3zyj_A Leucine-rich repeat-con 99.8 8.8E-19 3E-23 164.0 18.6 220 95-335 59-291 (440)
56 2z80_A TOLL-like receptor 2, v 99.8 4.4E-19 1.5E-23 161.2 15.9 267 5-311 30-312 (353)
57 3g06_A SSPH2 (leucine-rich rep 99.8 4.4E-18 1.5E-22 164.8 22.9 232 29-334 40-272 (622)
58 3o53_A Protein LRIM1, AGAP0063 99.8 1.6E-20 5.4E-25 168.3 3.8 261 29-339 34-302 (317)
59 1wwl_A Monocyte differentiatio 99.8 4.8E-20 1.6E-24 164.7 5.5 195 124-334 94-307 (312)
60 4g8a_A TOLL-like receptor 4; l 99.8 8.6E-18 3E-22 164.0 21.6 60 273-334 491-553 (635)
61 1ozn_A Reticulon 4 receptor; N 99.8 2.1E-18 7.3E-23 151.9 15.3 167 9-205 14-185 (285)
62 1wwl_A Monocyte differentiatio 99.8 9.7E-20 3.3E-24 162.7 6.5 197 100-315 94-310 (312)
63 1ozn_A Reticulon 4 receptor; N 99.8 5.1E-18 1.8E-22 149.5 17.1 130 95-227 27-164 (285)
64 3o53_A Protein LRIM1, AGAP0063 99.8 1.2E-18 4.1E-23 156.0 12.7 211 99-335 32-249 (317)
65 2xwt_C Thyrotropin receptor; s 99.8 9.2E-18 3.2E-22 143.9 16.2 207 95-336 27-239 (239)
66 3oja_A Leucine-rich immune mol 99.7 2.1E-18 7.2E-23 163.3 8.8 230 29-308 34-270 (487)
67 2xwt_C Thyrotropin receptor; s 99.7 2.9E-17 1E-21 140.8 15.1 175 101-311 55-237 (239)
68 3oja_A Leucine-rich immune mol 99.7 1.3E-17 4.4E-22 157.9 13.8 209 101-335 34-249 (487)
69 4ay9_X Follicle-stimulating ho 99.7 1.3E-16 4.4E-21 144.7 18.3 238 9-309 12-255 (350)
70 1p9a_G Platelet glycoprotein I 99.7 1.7E-16 5.9E-21 140.0 18.0 192 62-286 7-205 (290)
71 4ay9_X Follicle-stimulating ho 99.7 3.4E-16 1.2E-20 141.9 20.3 220 95-332 25-255 (350)
72 1p9a_G Platelet glycoprotein I 99.7 1.6E-16 5.5E-21 140.2 17.5 194 2-227 6-206 (290)
73 2z62_A TOLL-like receptor 4, v 99.7 1.1E-16 3.8E-21 140.2 14.5 195 99-310 26-234 (276)
74 2o6q_A Variable lymphocyte rec 99.7 6.5E-16 2.2E-20 134.9 18.2 176 101-311 37-216 (270)
75 1h6u_A Internalin H; cell adhe 99.7 1E-16 3.4E-21 142.8 12.9 193 62-293 38-233 (308)
76 2z62_A TOLL-like receptor 4, v 99.7 3E-16 1E-20 137.4 14.7 210 18-285 18-233 (276)
77 2o6q_A Variable lymphocyte rec 99.7 1.2E-15 4.1E-20 133.2 17.9 168 6-205 16-189 (270)
78 1h6u_A Internalin H; cell adhe 99.7 2.6E-16 8.9E-21 140.1 13.7 192 100-318 40-234 (308)
79 1z7x_W Ribonuclease inhibitor; 99.7 4.3E-18 1.5E-22 160.1 1.3 202 125-334 199-438 (461)
80 1z7x_W Ribonuclease inhibitor; 99.7 1.3E-18 4.3E-23 163.8 -2.6 35 299-334 369-409 (461)
81 2ast_B S-phase kinase-associat 99.7 3.1E-17 1.1E-21 147.8 5.3 106 99-205 91-203 (336)
82 4glp_A Monocyte differentiatio 99.7 1.4E-15 4.7E-20 135.6 15.0 199 125-334 91-305 (310)
83 3ogk_B Coronatine-insensitive 99.7 1.2E-17 4.2E-22 162.0 1.4 221 101-335 192-448 (592)
84 2p1m_B Transport inhibitor res 99.7 1.1E-17 3.8E-22 162.3 1.1 59 275-335 455-518 (594)
85 3ogk_B Coronatine-insensitive 99.6 1.7E-17 5.7E-22 161.0 0.4 312 4-334 110-499 (592)
86 3rfs_A Internalin B, repeat mo 99.6 2.3E-15 8E-20 131.5 13.1 123 64-205 40-165 (272)
87 4glp_A Monocyte differentiatio 99.6 1.4E-15 4.6E-20 135.6 10.8 199 101-315 91-308 (310)
88 2ast_B S-phase kinase-associat 99.6 1.5E-16 5.1E-21 143.3 4.3 171 7-205 48-230 (336)
89 3rfs_A Internalin B, repeat mo 99.6 5.4E-15 1.8E-19 129.2 12.7 193 29-265 41-242 (272)
90 2p1m_B Transport inhibitor res 99.6 6.6E-17 2.3E-21 156.8 -0.2 90 242-335 395-493 (594)
91 2ca6_A RAN GTPase-activating p 99.6 3.5E-16 1.2E-20 143.8 2.1 238 62-317 29-319 (386)
92 3m19_A Variable lymphocyte rec 99.6 3.3E-14 1.1E-18 122.7 14.0 173 125-334 14-190 (251)
93 3m19_A Variable lymphocyte rec 99.6 8.1E-14 2.8E-18 120.2 15.4 168 6-205 14-187 (251)
94 2ca6_A RAN GTPase-activating p 99.5 6.4E-16 2.2E-20 142.0 1.7 222 100-334 31-314 (386)
95 3goz_A Leucine-rich repeat-con 99.5 3.8E-15 1.3E-19 135.7 4.2 206 102-315 52-298 (362)
96 1h6t_A Internalin B; cell adhe 99.5 1.5E-13 5.2E-18 121.1 14.4 163 29-227 46-211 (291)
97 1h6t_A Internalin B; cell adhe 99.5 6.2E-14 2.1E-18 123.6 11.8 163 63-253 44-209 (291)
98 3cvr_A Invasion plasmid antige 99.5 1.6E-13 5.6E-18 131.3 14.8 161 101-310 80-240 (571)
99 4ezg_A Putative uncharacterize 99.5 1.1E-13 3.8E-18 114.8 11.5 125 100-227 65-192 (197)
100 4ezg_A Putative uncharacterize 99.5 7.8E-14 2.7E-18 115.7 9.1 144 100-253 43-190 (197)
101 3cvr_A Invasion plasmid antige 99.5 2.2E-13 7.5E-18 130.5 13.4 129 30-205 60-188 (571)
102 3goz_A Leucine-rich repeat-con 99.5 1.9E-14 6.5E-19 131.0 3.7 224 98-334 19-295 (362)
103 1m9s_A Internalin B; cell inva 99.5 4E-13 1.4E-17 129.9 13.0 163 63-253 41-206 (605)
104 1m9s_A Internalin B; cell inva 99.4 4.6E-13 1.6E-17 129.4 12.4 172 122-318 40-214 (605)
105 1xeu_A Internalin C; cellular 99.4 2.2E-13 7.7E-18 118.2 6.7 138 101-253 19-159 (263)
106 1xeu_A Internalin C; cellular 99.4 3.5E-13 1.2E-17 117.0 7.1 147 99-262 39-188 (263)
107 2v9t_B SLIT homolog 2 protein 99.4 9.7E-12 3.3E-16 104.9 13.7 107 100-209 55-164 (220)
108 2v70_A SLIT-2, SLIT homolog 2 99.3 8.1E-12 2.8E-16 105.3 12.7 103 100-205 56-161 (220)
109 3e6j_A Variable lymphocyte rec 99.3 1.5E-11 5.1E-16 104.4 13.7 80 101-183 88-169 (229)
110 2o6s_A Variable lymphocyte rec 99.3 5E-12 1.7E-16 105.6 10.4 11 243-253 164-174 (208)
111 2v70_A SLIT-2, SLIT homolog 2 99.3 2E-11 6.9E-16 102.9 14.0 148 9-185 14-165 (220)
112 2v9t_B SLIT homolog 2 protein 99.3 2.1E-11 7.1E-16 102.8 13.1 125 101-227 32-163 (220)
113 3e6j_A Variable lymphocyte rec 99.3 2E-11 6.9E-16 103.6 12.7 123 101-227 40-170 (229)
114 2xot_A Amphoterin-induced prot 99.3 9.9E-12 3.4E-16 113.0 10.9 158 9-197 21-187 (361)
115 2ell_A Acidic leucine-rich nuc 99.3 1E-11 3.5E-16 100.0 9.4 128 27-184 22-158 (168)
116 2o6s_A Variable lymphocyte rec 99.3 6.5E-11 2.2E-15 98.8 14.5 80 101-183 76-158 (208)
117 1dce_A Protein (RAB geranylger 99.3 1.3E-13 4.3E-18 132.6 -2.6 120 126-251 442-567 (567)
118 3sb4_A Hypothetical leucine ri 99.3 4.6E-11 1.6E-15 107.1 13.4 99 215-329 225-327 (329)
119 1dce_A Protein (RAB geranylger 99.3 3E-14 1E-18 136.9 -8.9 188 99-330 347-567 (567)
120 2xot_A Amphoterin-induced prot 99.2 6.4E-11 2.2E-15 107.6 12.7 163 32-227 21-200 (361)
121 4fdw_A Leucine rich hypothetic 99.2 2.6E-09 9E-14 98.1 23.3 252 29-333 113-380 (401)
122 2ell_A Acidic leucine-rich nuc 99.2 8.6E-11 2.9E-15 94.5 9.3 81 99-183 22-105 (168)
123 2je0_A Acidic leucine-rich nuc 99.2 2.6E-11 8.8E-16 95.6 5.6 57 101-159 64-123 (149)
124 4b8c_D Glucose-repressible alc 99.2 3.4E-11 1.2E-15 119.1 7.5 81 101-184 247-327 (727)
125 2je0_A Acidic leucine-rich nuc 99.1 3.1E-11 1.1E-15 95.1 5.2 123 64-204 16-147 (149)
126 1a9n_A U2A', U2A'; complex (nu 99.1 3.6E-11 1.2E-15 97.6 4.7 97 101-202 42-145 (176)
127 1w8a_A SLIT protein; signaling 99.1 4.4E-10 1.5E-14 92.5 9.8 104 100-205 28-134 (192)
128 2wfh_A SLIT homolog 2 protein 99.1 9E-10 3.1E-14 90.7 11.3 103 99-205 29-134 (193)
129 1w8a_A SLIT protein; signaling 99.1 6E-10 2.1E-14 91.7 10.1 123 32-185 11-138 (192)
130 1a9n_A U2A', U2A'; complex (nu 99.1 1.4E-10 4.8E-15 94.1 6.0 102 99-205 17-121 (176)
131 2wfh_A SLIT homolog 2 protein 99.1 1.1E-09 3.8E-14 90.2 11.3 120 103-227 12-137 (193)
132 4b8c_D Glucose-repressible alc 99.0 2.1E-10 7.3E-15 113.4 5.9 104 98-205 221-324 (727)
133 4fdw_A Leucine rich hypothetic 99.0 3.8E-08 1.3E-12 90.3 19.8 251 5-309 112-379 (401)
134 3sb4_A Hypothetical leucine ri 99.0 2E-09 6.8E-14 96.4 10.6 181 4-205 99-305 (329)
135 2o6r_A Variable lymphocyte rec 98.9 9.5E-09 3.3E-13 83.2 11.6 101 101-205 28-132 (177)
136 2o6r_A Variable lymphocyte rec 98.9 1.1E-08 3.9E-13 82.7 12.0 122 102-229 8-137 (177)
137 4fs7_A Uncharacterized protein 98.9 1.9E-07 6.6E-12 85.5 20.7 204 101-332 162-375 (394)
138 1ds9_A Outer arm dynein; leuci 98.9 1.8E-11 6.2E-16 101.4 -6.3 105 62-184 45-151 (198)
139 1ds9_A Outer arm dynein; leuci 98.9 8.1E-11 2.8E-15 97.5 -3.2 122 102-228 24-152 (198)
140 3g39_A Variable lymphocyte rec 98.7 3.9E-08 1.3E-12 79.1 9.1 96 103-204 11-109 (170)
141 2r9u_A Variable lymphocyte rec 98.7 4.1E-08 1.4E-12 79.2 9.1 79 101-182 33-114 (174)
142 4gt6_A Cell surface protein; l 98.7 3.2E-06 1.1E-10 77.4 20.5 102 215-334 264-368 (394)
143 3g39_A Variable lymphocyte rec 98.6 1.4E-07 4.6E-12 75.9 9.7 102 66-185 10-114 (170)
144 2r9u_A Variable lymphocyte rec 98.6 1.5E-07 5.1E-12 75.9 9.7 102 103-210 14-118 (174)
145 4fs7_A Uncharacterized protein 98.6 1.5E-06 5.1E-11 79.6 17.2 269 4-316 69-380 (394)
146 4gt6_A Cell surface protein; l 98.5 7.1E-06 2.4E-10 75.1 18.6 122 192-331 260-386 (394)
147 4h09_A Hypothetical leucine ri 98.3 6.5E-05 2.2E-09 68.2 20.2 13 61-73 65-77 (379)
148 2ifg_A High affinity nerve gro 98.3 1.3E-06 4.5E-11 78.4 8.3 88 95-185 25-115 (347)
149 4h09_A Hypothetical leucine ri 98.3 0.00018 6E-09 65.2 22.5 134 169-321 213-352 (379)
150 2ifg_A High affinity nerve gro 98.3 2.7E-06 9.1E-11 76.4 10.0 58 100-159 55-113 (347)
151 2ra8_A Uncharacterized protein 98.3 1.5E-06 5.3E-11 78.3 7.6 82 121-205 135-227 (362)
152 3e4g_A ATP synthase subunit S, 98.2 1.7E-06 5.7E-11 69.2 5.8 92 29-140 61-154 (176)
153 3e4g_A ATP synthase subunit S, 98.2 9.1E-07 3.1E-11 70.7 3.8 90 216-316 61-155 (176)
154 3un9_A NLR family member X1; l 98.2 8.5E-08 2.9E-12 87.1 -3.0 58 101-159 72-136 (372)
155 3un9_A NLR family member X1; l 98.1 2E-07 6.7E-12 84.7 -1.9 158 148-317 71-255 (372)
156 2ra8_A Uncharacterized protein 98.1 2.2E-06 7.5E-11 77.3 5.0 60 118-181 165-227 (362)
157 1io0_A Tropomodulin; LRR prote 97.1 0.00015 5E-09 58.8 1.4 35 101-136 36-76 (185)
158 1io0_A Tropomodulin; LRR prote 97.0 0.00021 7.1E-09 57.9 2.1 108 216-334 36-162 (185)
159 3rw6_A Nuclear RNA export fact 96.9 0.00052 1.8E-08 58.8 3.2 79 122-203 167-257 (267)
160 3rw6_A Nuclear RNA export fact 96.6 0.00067 2.3E-08 58.1 2.1 78 99-179 168-257 (267)
161 3rfe_A Platelet glycoprotein I 94.8 0.023 7.9E-07 42.7 3.7 37 274-311 29-66 (130)
162 3rfe_A Platelet glycoprotein I 94.3 0.067 2.3E-06 40.1 5.2 33 245-285 32-64 (130)
163 1pgv_A TMD-1, tropomodulin TMD 91.1 0.1 3.4E-06 42.2 2.3 59 101-159 41-108 (197)
164 1pgv_A TMD-1, tropomodulin TMD 87.2 0.38 1.3E-05 38.8 3.0 11 148-158 40-50 (197)
165 2lz0_A Uncharacterized protein 43.0 26 0.00088 24.4 3.7 45 17-74 6-52 (100)
166 2lz0_A Uncharacterized protein 34.6 45 0.0015 23.1 3.9 47 256-310 6-53 (100)
No 1
>3rgz_A Protein brassinosteroid insensitive 1; phytohormone, leucine-rich RE receptor-like kinases, leucine-rich repeat; HET: NAG BLD; 2.28A {Arabidopsis thaliana} PDB: 3rgx_A* 3riz_A* 3rj0_A*
Probab=99.93 E-value=1.5e-25 Score=223.95 Aligned_cols=324 Identities=19% Similarity=0.109 Sum_probs=194.8
Q ss_pred CCCCCccEEeecccccCc-ccccCcc--CCCcceEecccCccccccccccCc---CCCC-----------CCCccccccc
Q 018478 3 DTNSSLEILEIWSCRSLT-YLAAVQL--PRSLKRLDIQCCSNIRTLTMEEGI---QSSS-----------SSSSRRYTSY 65 (355)
Q Consensus 3 ~~~~~L~~L~l~~~~~l~-~l~~~~~--~~~L~~L~l~~~~~l~~~~~~~~~---~~~~-----------~~~~~~~~~~ 65 (355)
.++++|++|+++++. ++ .++.... .++|++|+++++.-...++..... +.+. ..+..+..++
T Consensus 340 ~~l~~L~~L~Ls~n~-l~~~~p~~l~~l~~~L~~L~Ls~N~l~~~~~~~~~~~~~~~L~~L~L~~n~l~~~~p~~l~~l~ 418 (768)
T 3rgz_A 340 LKMRGLKVLDLSFNE-FSGELPESLTNLSASLLTLDLSSNNFSGPILPNLCQNPKNTLQELYLQNNGFTGKIPPTLSNCS 418 (768)
T ss_dssp TTCTTCCEEECCSSE-EEECCCTTHHHHTTTCSEEECCSSEEEEECCTTTTCSTTCCCCEEECCSSEEEEECCGGGGGCT
T ss_pred hcCCCCCEEeCcCCc-cCccccHHHHhhhcCCcEEEccCCCcCCCcChhhhhcccCCccEEECCCCccccccCHHHhcCC
Confidence 457889999998763 33 3332211 137888888875422233332210 0000 0122334455
Q ss_pred cccEEEecCCCccchhccccccchhccccccCCCCCcccEEEEccCcchhchhhhccCCCCCcEEEeeccCCcCcccccc
Q 018478 66 LLEELCISSCRSLTSIFSKNELSATLESLEVGNLPPSLKSLRVQGCSKLESIAETLDNSTSLETIHIFYCENMKILPSGL 145 (355)
Q Consensus 66 ~L~~L~l~~~~~l~~~~~~n~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~ 145 (355)
+|+.|+++++ .+.+..+ .....+++|+.|++++|.....+|..+..+++|++|++++|.....+|..+
T Consensus 419 ~L~~L~Ls~N----------~l~~~~p--~~l~~l~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~p~~l 486 (768)
T 3rgz_A 419 ELVSLHLSFN----------YLSGTIP--SSLGSLSKLRDLKLWLNMLEGEIPQELMYVKTLETLILDFNDLTGEIPSGL 486 (768)
T ss_dssp TCCEEECCSS----------EEESCCC--GGGGGCTTCCEEECCSSCCCSCCCGGGGGCTTCCEEECCSSCCCSCCCGGG
T ss_pred CCCEEECcCC----------cccCccc--HHHhcCCCCCEEECCCCcccCcCCHHHcCCCCceEEEecCCcccCcCCHHH
Confidence 5555555443 2222221 111334677777777777444567777777777777777777555667777
Q ss_pred cCCCCCceEeccccCCCcCCCCCCCCCCCcceEEEccccCcCcccccccCCCCCceEEEeec----CcCC----------
Q 018478 146 HNLRQLQEISIEGCGNLESFPEGGLPCAKLKEVVIRWCGRLEALPKGLHNLKSLQKLTIGKG----GLEE---------- 211 (355)
Q Consensus 146 ~~l~~L~~L~l~~~~~l~~~~~~~~~~~~L~~L~l~~~~~~~~~p~~l~~~~~L~~L~l~~~----~i~~---------- 211 (355)
..+++|+.|++++|.....+|..+..+++|+.|++++|.....+|..+..+++|+.|+++.+ .+|.
T Consensus 487 ~~l~~L~~L~L~~N~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~p~~l~~l~~L~~L~Ls~N~l~g~ip~~~~~~~~~~~ 566 (768)
T 3rgz_A 487 SNCTNLNWISLSNNRLTGEIPKWIGRLENLAILKLSNNSFSGNIPAELGDCRSLIWLDLNTNLFNGTIPAAMFKQSGKIA 566 (768)
T ss_dssp GGCTTCCEEECCSSCCCSCCCGGGGGCTTCCEEECCSSCCEEECCGGGGGCTTCCEEECCSSEEESBCCGGGGTTTTCBC
T ss_pred hcCCCCCEEEccCCccCCcCChHHhcCCCCCEEECCCCcccCcCCHHHcCCCCCCEEECCCCccCCcCChHHhcccchhh
Confidence 77777777777777544466777777777778877777655567777777777777777611 1211
Q ss_pred -------------------------------------------------------------CCCCCCccEEEecCCcchh
Q 018478 212 -------------------------------------------------------------DGLPTNLHSLDIRGNMEIW 230 (355)
Q Consensus 212 -------------------------------------------------------------~~~~~~L~~L~l~~~~~~~ 230 (355)
....++|+.|++++|....
T Consensus 567 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~l~~~~~~g~~~~~~~~l~~L~~LdLs~N~l~g 646 (768)
T 3rgz_A 567 ANFIAGKRYVYIKNDGMKKECHGAGNLLEFQGIRSEQLNRLSTRNPCNITSRVYGGHTSPTFDNNGSMMFLDMSYNMLSG 646 (768)
T ss_dssp CSTTCSCEEEEEECCSCCTTCCSSEEEEECTTCCGGGGGGGGGTCCSCTTSCEEEEECCCSCSSSBCCCEEECCSSCCBS
T ss_pred hhccccccccccccccccccccccccccccccccchhhhccccccccccccceecccCchhhhccccccEEECcCCcccc
Confidence 1123567788888877554
Q ss_pred hhhhhhcccCCCCCccceeEecccCCcccccCccccccCCCCCCCCccceEEeccCCCcc-cccccCCCCCCccEEeeCC
Q 018478 231 KSMIEWGQGFHRFSSLRELRIEGCDDDMVSFPPEDIRMGTTLPLPTSLTSLAIFSFPNLE-RLSSSIVDLQNLTSLYLVG 309 (355)
Q Consensus 231 ~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~l~-~l~~~~~~~~~L~~L~l~~ 309 (355)
.++.. ++.+++|+.|++++ +.-...+|..+ ..+++|++|+++++ .++ .+|..+..+++|++|++++
T Consensus 647 ~ip~~----l~~l~~L~~L~Ls~-N~l~g~ip~~l-------~~L~~L~~LdLs~N-~l~g~ip~~l~~l~~L~~L~ls~ 713 (768)
T 3rgz_A 647 YIPKE----IGSMPYLFILNLGH-NDISGSIPDEV-------GDLRGLNILDLSSN-KLDGRIPQAMSALTMLTEIDLSN 713 (768)
T ss_dssp CCCGG----GGGCTTCCEEECCS-SCCCSCCCGGG-------GGCTTCCEEECCSS-CCEECCCGGGGGCCCCSEEECCS
T ss_pred cCCHH----HhccccCCEEeCcC-CccCCCCChHH-------hCCCCCCEEECCCC-cccCcCChHHhCCCCCCEEECcC
Confidence 44432 66788888888887 43344777766 56778888888884 444 7777778888888888888
Q ss_pred CCCCc-ccCCCCCCCCccEEEecCCchhh----HhhhccCCcccccccc
Q 018478 310 CPKLK-YFPEKGLPSSLLELWIGGCPLIE----EKCRKDGGQYFYSLFY 353 (355)
Q Consensus 310 ~~~l~-~~~~~~~~~~L~~L~l~~c~~l~----~~~~~~~~~~~~~i~~ 353 (355)
| +++ .+|..+.+.++....+.+++.+. ..|....+++|+||+|
T Consensus 714 N-~l~g~iP~~~~~~~~~~~~~~gN~~Lcg~~l~~C~~~~~~~~~~~~~ 761 (768)
T 3rgz_A 714 N-NLSGPIPEMGQFETFPPAKFLNNPGLCGYPLPRCDPSNADGYAHHQR 761 (768)
T ss_dssp S-EEEEECCSSSSGGGSCGGGGCSCTEEESTTSCCCCSCC---------
T ss_pred C-cccccCCCchhhccCCHHHhcCCchhcCCCCcCCCCCccCCCCCCCC
Confidence 8 444 45655555555555566665432 2688999999999987
No 2
>4fmz_A Internalin; leucine rich repeat, structural genomic center for structural genomics, JCSG, protein structure INI PSI-biology; HET: MSE; 1.91A {Listeria monocytogenes serotype 4B}
Probab=99.92 E-value=4.1e-24 Score=193.95 Aligned_cols=188 Identities=18% Similarity=0.212 Sum_probs=103.0
Q ss_pred CCCCccEEeecccccCcccccCccCCCcceEecccCccccccccccCcCCCCCCCccccccccccEEEecCCCccchhcc
Q 018478 4 TNSSLEILEIWSCRSLTYLAAVQLPRSLKRLDIQCCSNIRTLTMEEGIQSSSSSSSRRYTSYLLEELCISSCRSLTSIFS 83 (355)
Q Consensus 4 ~~~~L~~L~l~~~~~l~~l~~~~~~~~L~~L~l~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~~~~ 83 (355)
.+++|++|++.++ .++.++.....++|++|++++| .+..++.. ..+++|++|+++++ .++.+
T Consensus 42 ~l~~L~~L~l~~~-~i~~~~~~~~~~~L~~L~l~~n-~i~~~~~~-------------~~l~~L~~L~L~~n-~i~~~-- 103 (347)
T 4fmz_A 42 ELESITKLVVAGE-KVASIQGIEYLTNLEYLNLNGN-QITDISPL-------------SNLVKLTNLYIGTN-KITDI-- 103 (347)
T ss_dssp HHTTCSEEECCSS-CCCCCTTGGGCTTCCEEECCSS-CCCCCGGG-------------TTCTTCCEEECCSS-CCCCC--
T ss_pred hcccccEEEEeCC-ccccchhhhhcCCccEEEccCC-ccccchhh-------------hcCCcCCEEEccCC-cccCc--
Confidence 4678888888864 5666654444588888888885 46665542 23667777777765 34444
Q ss_pred ccccchhccccccCCCCCcccEEEEccCcchhchhhhccCCCCCcEEEeeccCCcCcccccccCCCCCceEeccccCCCc
Q 018478 84 KNELSATLESLEVGNLPPSLKSLRVQGCSKLESIAETLDNSTSLETIHIFYCENMKILPSGLHNLRQLQEISIEGCGNLE 163 (355)
Q Consensus 84 ~n~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~l~ 163 (355)
+....+++|++|++++|. +..++. +..+++|++|++++|.....++. +..+++|+.|++++| .+.
T Consensus 104 -----------~~~~~l~~L~~L~l~~n~-i~~~~~-~~~l~~L~~L~l~~n~~~~~~~~-~~~l~~L~~L~l~~~-~~~ 168 (347)
T 4fmz_A 104 -----------SALQNLTNLRELYLNEDN-ISDISP-LANLTKMYSLNLGANHNLSDLSP-LSNMTGLNYLTVTES-KVK 168 (347)
T ss_dssp -----------GGGTTCTTCSEEECTTSC-CCCCGG-GTTCTTCCEEECTTCTTCCCCGG-GTTCTTCCEEECCSS-CCC
T ss_pred -----------hHHcCCCcCCEEECcCCc-ccCchh-hccCCceeEEECCCCCCcccccc-hhhCCCCcEEEecCC-CcC
Confidence 333444566666666655 444444 55566666666666654444332 555666666666655 333
Q ss_pred CCCCCCCCCCCcceEEEccccCcCcccccccCCCCCceEEEeecCcCC---CCCCCCccEEEecCCc
Q 018478 164 SFPEGGLPCAKLKEVVIRWCGRLEALPKGLHNLKSLQKLTIGKGGLEE---DGLPTNLHSLDIRGNM 227 (355)
Q Consensus 164 ~~~~~~~~~~~L~~L~l~~~~~~~~~p~~l~~~~~L~~L~l~~~~i~~---~~~~~~L~~L~l~~~~ 227 (355)
.++. +..+++|+.|++++|. ++.++. +..+++|+.|+++.+.+.. ...+++|+.|++++|.
T Consensus 169 ~~~~-~~~l~~L~~L~l~~n~-l~~~~~-~~~l~~L~~L~l~~n~l~~~~~~~~~~~L~~L~l~~n~ 232 (347)
T 4fmz_A 169 DVTP-IANLTDLYSLSLNYNQ-IEDISP-LASLTSLHYFTAYVNQITDITPVANMTRLNSLKIGNNK 232 (347)
T ss_dssp CCGG-GGGCTTCSEEECTTSC-CCCCGG-GGGCTTCCEEECCSSCCCCCGGGGGCTTCCEEECCSSC
T ss_pred Cchh-hccCCCCCEEEccCCc-cccccc-ccCCCccceeecccCCCCCCchhhcCCcCCEEEccCCc
Confidence 3332 4445556666665542 333332 4455555555554222221 2233455555555543
No 3
>3v47_A TOLL-like receptor 5B and variable lymphocyte REC chimeric protein; innate immunity, leucine-rich repeat, innate immune receptor system; HET: NAG; 2.47A {Danio rerio} PDB: 3v44_A*
Probab=99.92 E-value=1.6e-23 Score=197.08 Aligned_cols=291 Identities=17% Similarity=0.145 Sum_probs=183.7
Q ss_pred CCccEEeecccccCcccccCccC--CCcceEecccCccccccccccCcCCCCCCCccccccccccEEEecCCCccchhcc
Q 018478 6 SSLEILEIWSCRSLTYLAAVQLP--RSLKRLDIQCCSNIRTLTMEEGIQSSSSSSSRRYTSYLLEELCISSCRSLTSIFS 83 (355)
Q Consensus 6 ~~L~~L~l~~~~~l~~l~~~~~~--~~L~~L~l~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~~~~ 83 (355)
++|++|+++++ .++.+++..+. ++|++|+++++.....++... +..+++|++|+++++.. +.+
T Consensus 30 ~~l~~L~Ls~n-~i~~~~~~~~~~l~~L~~L~L~~n~~~~~i~~~~-----------~~~l~~L~~L~Ls~n~l-~~~-- 94 (455)
T 3v47_A 30 AHVNYVDLSLN-SIAELNETSFSRLQDLQFLKVEQQTPGLVIRNNT-----------FRGLSSLIILKLDYNQF-LQL-- 94 (455)
T ss_dssp TTCCEEECCSS-CCCEECTTTTSSCTTCCEEECCCCSTTCEECTTT-----------TTTCTTCCEEECTTCTT-CEE--
T ss_pred CccCEEEecCC-ccCcCChhHhccCccccEEECcCCcccceECccc-----------ccccccCCEEeCCCCcc-Ccc--
Confidence 45777777754 45555444443 677777777754222333322 45577777777776532 222
Q ss_pred ccccchhccccccCCCCCcccEEEEccCcchhchhhh--ccCCCCCcEEEeeccCCcCccccc-ccCCCCCceEeccccC
Q 018478 84 KNELSATLESLEVGNLPPSLKSLRVQGCSKLESIAET--LDNSTSLETIHIFYCENMKILPSG-LHNLRQLQEISIEGCG 160 (355)
Q Consensus 84 ~n~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~--~~~l~~L~~L~l~~~~~~~~~~~~-~~~l~~L~~L~l~~~~ 160 (355)
.+ .....+++|++|++++|.....++.. +..+++|++|++++|......|.. +..+++|+.|++++|.
T Consensus 95 -------~~--~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~l~~L~~L~L~~n~ 165 (455)
T 3v47_A 95 -------ET--GAFNGLANLEVLTLTQCNLDGAVLSGNFFKPLTSLEMLVLRDNNIKKIQPASFFLNMRRFHVLDLTFNK 165 (455)
T ss_dssp -------CT--TTTTTCTTCCEEECTTSCCBTHHHHSSTTTTCTTCCEEECCSSBCCSCCCCGGGGGCTTCCEEECTTCC
T ss_pred -------Ch--hhccCcccCCEEeCCCCCCCccccCcccccCcccCCEEECCCCccCccCcccccCCCCcccEEeCCCCc
Confidence 00 11234467778888777622233433 667777888887777733333443 6677777777777763
Q ss_pred CCcCCCCCCC----------------------------------CCCCcceEEEccccCcCccccccc------------
Q 018478 161 NLESFPEGGL----------------------------------PCAKLKEVVIRWCGRLEALPKGLH------------ 194 (355)
Q Consensus 161 ~l~~~~~~~~----------------------------------~~~~L~~L~l~~~~~~~~~p~~l~------------ 194 (355)
.....+..+. .+++|+.|++++|......|..+.
T Consensus 166 l~~~~~~~l~~l~~~~L~~L~l~~n~l~~~~~~~~~~~~~~~~~~~~~L~~L~Ls~n~l~~~~~~~~~~~~~~~~L~~L~ 245 (455)
T 3v47_A 166 VKSICEEDLLNFQGKHFTLLRLSSITLQDMNEYWLGWEKCGNPFKNTSITTLDLSGNGFKESMAKRFFDAIAGTKIQSLI 245 (455)
T ss_dssp BSCCCTTTSGGGTTCEEEEEECTTCBCTTCSTTCTTHHHHCCTTTTCEEEEEECTTSCCCHHHHHHHHHHTTTCCEEEEE
T ss_pred ccccChhhhhccccccccccccccCcccccchhhccccccccccccceeeeEecCCCcccccchhhhhccccccceeeEe
Confidence 2222222222 235778888877643332222221
Q ss_pred ---------------------------CCCCCceEEEeecCcCC-----CCCCCCccEEEecCCcchhhhhhhhcccCCC
Q 018478 195 ---------------------------NLKSLQKLTIGKGGLEE-----DGLPTNLHSLDIRGNMEIWKSMIEWGQGFHR 242 (355)
Q Consensus 195 ---------------------------~~~~L~~L~l~~~~i~~-----~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~ 242 (355)
..++|++|+++.+.+.. ...+++|+.|++++|......+. . +..
T Consensus 246 l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~--~--~~~ 321 (455)
T 3v47_A 246 LSNSYNMGSSFGHTNFKDPDNFTFKGLEASGVKTCDLSKSKIFALLKSVFSHFTDLEQLTLAQNEINKIDDN--A--FWG 321 (455)
T ss_dssp CTTCTTTSCCTTCCSSCCCCTTTTGGGTTSCCCEEECCSSCCCEECTTTTTTCTTCCEEECTTSCCCEECTT--T--TTT
T ss_pred eccccccccccchhhhccCcccccccccccCceEEEecCccccccchhhcccCCCCCEEECCCCcccccChh--H--hcC
Confidence 12467777777333321 34568899999998875432222 1 778
Q ss_pred CCccceeEecccCCcccccCccccccCCCCCCCCccceEEeccCCCcccc-cccCCCCCCccEEeeCCCCCCcccCCCCC
Q 018478 243 FSSLRELRIEGCDDDMVSFPPEDIRMGTTLPLPTSLTSLAIFSFPNLERL-SSSIVDLQNLTSLYLVGCPKLKYFPEKGL 321 (355)
Q Consensus 243 l~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~l-~~~~~~~~~L~~L~l~~~~~l~~~~~~~~ 321 (355)
+++|++|++++ +.+..++...+ ..+++|++|++++ +.++.+ |..+..+++|++|++++| +++.++...+
T Consensus 322 l~~L~~L~Ls~--N~l~~~~~~~~------~~l~~L~~L~Ls~-N~l~~~~~~~~~~l~~L~~L~L~~N-~l~~~~~~~~ 391 (455)
T 3v47_A 322 LTHLLKLNLSQ--NFLGSIDSRMF------ENLDKLEVLDLSY-NHIRALGDQSFLGLPNLKELALDTN-QLKSVPDGIF 391 (455)
T ss_dssp CTTCCEEECCS--SCCCEECGGGG------TTCTTCCEEECCS-SCCCEECTTTTTTCTTCCEEECCSS-CCSCCCTTTT
T ss_pred cccCCEEECCC--CccCCcChhHh------cCcccCCEEECCC-CcccccChhhccccccccEEECCCC-ccccCCHhHh
Confidence 89999999998 46666654332 5678999999999 466666 667889999999999998 8999887544
Q ss_pred --CCCccEEEecCCc
Q 018478 322 --PSSLLELWIGGCP 334 (355)
Q Consensus 322 --~~~L~~L~l~~c~ 334 (355)
+++|++|++++++
T Consensus 392 ~~l~~L~~L~l~~N~ 406 (455)
T 3v47_A 392 DRLTSLQKIWLHTNP 406 (455)
T ss_dssp TTCTTCCEEECCSSC
T ss_pred ccCCcccEEEccCCC
Confidence 7899999998765
No 4
>3rgz_A Protein brassinosteroid insensitive 1; phytohormone, leucine-rich RE receptor-like kinases, leucine-rich repeat; HET: NAG BLD; 2.28A {Arabidopsis thaliana} PDB: 3rgx_A* 3riz_A* 3rj0_A*
Probab=99.92 E-value=2.9e-24 Score=214.60 Aligned_cols=316 Identities=16% Similarity=0.121 Sum_probs=191.0
Q ss_pred CCCccEEeecccccCcccccCccC--CCcceEecccCcccc-cccccc--CcCCCC-----------CCCccccccc-cc
Q 018478 5 NSSLEILEIWSCRSLTYLAAVQLP--RSLKRLDIQCCSNIR-TLTMEE--GIQSSS-----------SSSSRRYTSY-LL 67 (355)
Q Consensus 5 ~~~L~~L~l~~~~~l~~l~~~~~~--~~L~~L~l~~~~~l~-~~~~~~--~~~~~~-----------~~~~~~~~~~-~L 67 (355)
+++|++|+++++. ++...+..+. ++|++|+++++. +. .+|... +++++. ..+..+..++ +|
T Consensus 293 ~~~L~~L~Ls~n~-l~~~~p~~~~~l~~L~~L~L~~n~-l~~~ip~~~l~~l~~L~~L~Ls~n~l~~~~p~~l~~l~~~L 370 (768)
T 3rgz_A 293 CDTLTGLDLSGNH-FYGAVPPFFGSCSLLESLALSSNN-FSGELPMDTLLKMRGLKVLDLSFNEFSGELPESLTNLSASL 370 (768)
T ss_dssp CTTCSEEECCSSE-EEECCCGGGGGCTTCCEEECCSSE-EEEECCHHHHTTCTTCCEEECCSSEEEECCCTTHHHHTTTC
T ss_pred cCcCCEEECcCCc-CCCccchHHhcCCCccEEECCCCc-ccCcCCHHHHhcCCCCCEEeCcCCccCccccHHHHhhhcCC
Confidence 4788888888653 3322222232 778888888754 43 555431 111111 1122333343 55
Q ss_pred cEEEecCCC---------------ccchh-ccccccchhccccccCCCCCcccEEEEccCcchhchhhhccCCCCCcEEE
Q 018478 68 EELCISSCR---------------SLTSI-FSKNELSATLESLEVGNLPPSLKSLRVQGCSKLESIAETLDNSTSLETIH 131 (355)
Q Consensus 68 ~~L~l~~~~---------------~l~~~-~~~n~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~ 131 (355)
+.|+++++. .++.+ +.+|.+.+..+ .....+++|+.|++++|.....+|..++.+++|++|+
T Consensus 371 ~~L~Ls~N~l~~~~~~~~~~~~~~~L~~L~L~~n~l~~~~p--~~l~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~ 448 (768)
T 3rgz_A 371 LTLDLSSNNFSGPILPNLCQNPKNTLQELYLQNNGFTGKIP--PTLSNCSELVSLHLSFNYLSGTIPSSLGSLSKLRDLK 448 (768)
T ss_dssp SEEECCSSEEEEECCTTTTCSTTCCCCEEECCSSEEEEECC--GGGGGCTTCCEEECCSSEEESCCCGGGGGCTTCCEEE
T ss_pred cEEEccCCCcCCCcChhhhhcccCCccEEECCCCccccccC--HHHhcCCCCCEEECcCCcccCcccHHHhcCCCCCEEE
Confidence 666555432 12222 44444443332 1123345677777777663335566666677777777
Q ss_pred eeccCCcCcccccccCCCCCceEeccccCCCcCCCCCCCCCCCcceEEEccccCcCcccccccCCCCCceEEEeecCc--
Q 018478 132 IFYCENMKILPSGLHNLRQLQEISIEGCGNLESFPEGGLPCAKLKEVVIRWCGRLEALPKGLHNLKSLQKLTIGKGGL-- 209 (355)
Q Consensus 132 l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~l~~~~~~~~~~~~L~~L~l~~~~~~~~~p~~l~~~~~L~~L~l~~~~i-- 209 (355)
+++|.....+|..+..+++|+.|++++|.....+|..+..+++|+.|++++|.....+|..++.+++|++|+++.+.+
T Consensus 449 L~~n~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~p~~l~~l~~L~~L~L~~N~l~~~~p~~~~~l~~L~~L~L~~N~l~~ 528 (768)
T 3rgz_A 449 LWLNMLEGEIPQELMYVKTLETLILDFNDLTGEIPSGLSNCTNLNWISLSNNRLTGEIPKWIGRLENLAILKLSNNSFSG 528 (768)
T ss_dssp CCSSCCCSCCCGGGGGCTTCCEEECCSSCCCSCCCGGGGGCTTCCEEECCSSCCCSCCCGGGGGCTTCCEEECCSSCCEE
T ss_pred CCCCcccCcCCHHHcCCCCceEEEecCCcccCcCCHHHhcCCCCCEEEccCCccCCcCChHHhcCCCCCEEECCCCcccC
Confidence 777765556666777777777777777644445666667777777777777665556777777777788877773332
Q ss_pred --C-CCCCCCCccEEEecCCcchhhhhhhhc-------------------------------------------------
Q 018478 210 --E-EDGLPTNLHSLDIRGNMEIWKSMIEWG------------------------------------------------- 237 (355)
Q Consensus 210 --~-~~~~~~~L~~L~l~~~~~~~~~~~~~~------------------------------------------------- 237 (355)
| ..+.+++|+.|++++|.....++..+.
T Consensus 529 ~~p~~l~~l~~L~~L~Ls~N~l~g~ip~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ 608 (768)
T 3rgz_A 529 NIPAELGDCRSLIWLDLNTNLFNGTIPAAMFKQSGKIAANFIAGKRYVYIKNDGMKKECHGAGNLLEFQGIRSEQLNRLS 608 (768)
T ss_dssp ECCGGGGGCTTCCEEECCSSEEESBCCGGGGTTTTCBCCSTTCSCEEEEEECCSCCTTCCSSEEEEECTTCCGGGGGGGG
T ss_pred cCCHHHcCCCCCCEEECCCCccCCcCChHHhcccchhhhhccccccccccccccccccccccccccccccccchhhhccc
Confidence 2 234567788888877764422222110
Q ss_pred -----------------ccCCCCCccceeEecccCCcccccCccccccCCCCCCCCccceEEeccCCCcc-cccccCCCC
Q 018478 238 -----------------QGFHRFSSLRELRIEGCDDDMVSFPPEDIRMGTTLPLPTSLTSLAIFSFPNLE-RLSSSIVDL 299 (355)
Q Consensus 238 -----------------~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~l~-~l~~~~~~~ 299 (355)
..+..+++|+.|++++ +.-...+|.++ ..++.|+.|+++++ .++ .+|..+..+
T Consensus 609 ~~~~~~l~~~~~~g~~~~~~~~l~~L~~LdLs~-N~l~g~ip~~l-------~~l~~L~~L~Ls~N-~l~g~ip~~l~~L 679 (768)
T 3rgz_A 609 TRNPCNITSRVYGGHTSPTFDNNGSMMFLDMSY-NMLSGYIPKEI-------GSMPYLFILNLGHN-DISGSIPDEVGDL 679 (768)
T ss_dssp GTCCSCTTSCEEEEECCCSCSSSBCCCEEECCS-SCCBSCCCGGG-------GGCTTCCEEECCSS-CCCSCCCGGGGGC
T ss_pred cccccccccceecccCchhhhccccccEEECcC-CcccccCCHHH-------hccccCCEEeCcCC-ccCCCCChHHhCC
Confidence 0133456777888887 43344667666 46778888888884 454 778888888
Q ss_pred CCccEEeeCCCCCCcccCCCCC--CCCccEEEecCCc
Q 018478 300 QNLTSLYLVGCPKLKYFPEKGL--PSSLLELWIGGCP 334 (355)
Q Consensus 300 ~~L~~L~l~~~~~l~~~~~~~~--~~~L~~L~l~~c~ 334 (355)
++|+.|++++| +++...+..+ +++|++|++++|+
T Consensus 680 ~~L~~LdLs~N-~l~g~ip~~l~~l~~L~~L~ls~N~ 715 (768)
T 3rgz_A 680 RGLNILDLSSN-KLDGRIPQAMSALTMLTEIDLSNNN 715 (768)
T ss_dssp TTCCEEECCSS-CCEECCCGGGGGCCCCSEEECCSSE
T ss_pred CCCCEEECCCC-cccCcCChHHhCCCCCCEEECcCCc
Confidence 88888888888 6664333223 6888999988875
No 5
>2id5_A Lingo-1, leucine rich repeat neuronal 6A; CNS-specific LRR-IG containing, ligand binding protein,membr protein; HET: NAG MAN; 2.70A {Homo sapiens}
Probab=99.92 E-value=1.3e-23 Score=198.88 Aligned_cols=220 Identities=17% Similarity=0.149 Sum_probs=141.1
Q ss_pred CCcccEEEEccCcchhchhhhccCCCCCcEEEeeccCCcCcccccccCCCCCceEeccccCCCcCCCC-CCCCCCCcceE
Q 018478 100 PPSLKSLRVQGCSKLESIAETLDNSTSLETIHIFYCENMKILPSGLHNLRQLQEISIEGCGNLESFPE-GGLPCAKLKEV 178 (355)
Q Consensus 100 ~~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~l~~~~~-~~~~~~~L~~L 178 (355)
+++|+.|++++|......+..+..+++|++|++++|......+..+..+++|+.|++++| .++.++. .+..+++|+.|
T Consensus 103 l~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n-~l~~~~~~~l~~l~~L~~L 181 (477)
T 2id5_A 103 LSNLTKLDISENKIVILLDYMFQDLYNLKSLEVGDNDLVYISHRAFSGLNSLEQLTLEKC-NLTSIPTEALSHLHGLIVL 181 (477)
T ss_dssp CTTCCEEECTTSCCCEECTTTTTTCTTCCEEEECCTTCCEECTTSSTTCTTCCEEEEESC-CCSSCCHHHHTTCTTCCEE
T ss_pred CCCCCEEECCCCccccCChhHccccccCCEEECCCCccceeChhhccCCCCCCEEECCCC-cCcccChhHhcccCCCcEE
Confidence 456666666666522223445566666666666666533333445666666666666665 4444442 34456666666
Q ss_pred EEccccCcCcccccccCCCCCceEEEeec----CcCC-CCCCCCccEEEecCCcchhhhhhhhcccCCCCCccceeEecc
Q 018478 179 VIRWCGRLEALPKGLHNLKSLQKLTIGKG----GLEE-DGLPTNLHSLDIRGNMEIWKSMIEWGQGFHRFSSLRELRIEG 253 (355)
Q Consensus 179 ~l~~~~~~~~~p~~l~~~~~L~~L~l~~~----~i~~-~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~l~~L~~L~l~~ 253 (355)
++++|......+..+..+++|+.|+++.. .++. .....+|+.|++++|... ..+... +..+++|++|++++
T Consensus 182 ~l~~n~i~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~n~l~-~~~~~~---~~~l~~L~~L~Ls~ 257 (477)
T 2id5_A 182 RLRHLNINAIRDYSFKRLYRLKVLEISHWPYLDTMTPNCLYGLNLTSLSITHCNLT-AVPYLA---VRHLVYLRFLNLSY 257 (477)
T ss_dssp EEESCCCCEECTTCSCSCTTCCEEEEECCTTCCEECTTTTTTCCCSEEEEESSCCC-SCCHHH---HTTCTTCCEEECCS
T ss_pred eCCCCcCcEeChhhcccCcccceeeCCCCccccccCcccccCccccEEECcCCccc-ccCHHH---hcCccccCeeECCC
Confidence 66665433333345666677777777621 1221 122347888888877633 333222 67888999999998
Q ss_pred cCCcccccCccccccCCCCCCCCccceEEeccCCCcccc-cccCCCCCCccEEeeCCCCCCcccCCCCC--CCCccEEEe
Q 018478 254 CDDDMVSFPPEDIRMGTTLPLPTSLTSLAIFSFPNLERL-SSSIVDLQNLTSLYLVGCPKLKYFPEKGL--PSSLLELWI 330 (355)
Q Consensus 254 ~~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~l-~~~~~~~~~L~~L~l~~~~~l~~~~~~~~--~~~L~~L~l 330 (355)
+.+..++...+ ..+++|++|++++ +.++.+ +..+..+++|++|++++| +++.++...+ +++|++|++
T Consensus 258 --n~l~~~~~~~~------~~l~~L~~L~L~~-n~l~~~~~~~~~~l~~L~~L~L~~N-~l~~~~~~~~~~l~~L~~L~l 327 (477)
T 2id5_A 258 --NPISTIEGSML------HELLRLQEIQLVG-GQLAVVEPYAFRGLNYLRVLNVSGN-QLTTLEESVFHSVGNLETLIL 327 (477)
T ss_dssp --SCCCEECTTSC------TTCTTCCEEECCS-SCCSEECTTTBTTCTTCCEEECCSS-CCSCCCGGGBSCGGGCCEEEC
T ss_pred --CcCCccChhhc------cccccCCEEECCC-CccceECHHHhcCcccCCEEECCCC-cCceeCHhHcCCCcccCEEEc
Confidence 55666665432 5678899999998 466655 567788999999999998 8998887543 689999999
Q ss_pred cCCc
Q 018478 331 GGCP 334 (355)
Q Consensus 331 ~~c~ 334 (355)
.+++
T Consensus 328 ~~N~ 331 (477)
T 2id5_A 328 DSNP 331 (477)
T ss_dssp CSSC
T ss_pred cCCC
Confidence 9876
No 6
>4ecn_A Leucine-rich repeat protein; leucine-rich repeats, DUF4458 domain, protein binding, extra protein, structural genomics; 2.80A {Bacteroides thetaiotaomicron}
Probab=99.92 E-value=1.7e-23 Score=209.20 Aligned_cols=300 Identities=16% Similarity=0.212 Sum_probs=181.5
Q ss_pred CCCCCccEEeecccccCcc------------------cccCcc---CCCcceEecccCccccccccccCcCCCCCCCccc
Q 018478 3 DTNSSLEILEIWSCRSLTY------------------LAAVQL---PRSLKRLDIQCCSNIRTLTMEEGIQSSSSSSSRR 61 (355)
Q Consensus 3 ~~~~~L~~L~l~~~~~l~~------------------l~~~~~---~~~L~~L~l~~~~~l~~~~~~~~~~~~~~~~~~~ 61 (355)
+++++|++|+++++ .++. +|.... .++|++|++++|.....+|.. +
T Consensus 445 ~~L~~L~~L~Ls~N-~Lsg~~i~~~~~~~s~n~~~g~iP~~l~f~~L~~L~~L~Ls~N~l~~~iP~~------------l 511 (876)
T 4ecn_A 445 QRLTKLQIIYFANS-PFTYDNIAVDWEDANSDYAKQYENEELSWSNLKDLTDVELYNCPNMTQLPDF------------L 511 (876)
T ss_dssp GGCTTCCEEEEESC-CCCGGGBSSSCSCTTSHHHHHHTTSCCCGGGCTTCCEEEEESCTTCCSCCGG------------G
T ss_pred hcCCCCCEEECcCC-cCCCCcccccccccccccccccCChhhhhccCCCCCEEECcCCCCCccChHH------------H
Confidence 35678888888764 4555 554332 277888888876555555643 2
Q ss_pred cccccccEEEecCCC----------------------ccchh-ccccccchhccccccCCCCCcccEEEEccCcchhchh
Q 018478 62 YTSYLLEELCISSCR----------------------SLTSI-FSKNELSATLESLEVGNLPPSLKSLRVQGCSKLESIA 118 (355)
Q Consensus 62 ~~~~~L~~L~l~~~~----------------------~l~~~-~~~n~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~ 118 (355)
..+++|+.|+++++. .++.+ +++|.+. .++.......+++|+.|++++|. +..+|
T Consensus 512 ~~L~~L~~L~Ls~N~~lsg~~iP~~i~~L~~~~~~l~~L~~L~Ls~N~L~-~ip~~~~l~~L~~L~~L~Ls~N~-l~~lp 589 (876)
T 4ecn_A 512 YDLPELQSLNIACNRGISAAQLKADWTRLADDEDTGPKIQIFYMGYNNLE-EFPASASLQKMVKLGLLDCVHNK-VRHLE 589 (876)
T ss_dssp GGCSSCCEEECTTCTTSCHHHHHHHHHHHHHCTTTTTTCCEEECCSSCCC-BCCCHHHHTTCTTCCEEECTTSC-CCBCC
T ss_pred hCCCCCCEEECcCCCCcccccchHHHHhhhhcccccCCccEEEeeCCcCC-ccCChhhhhcCCCCCEEECCCCC-cccch
Confidence 446666666666553 12222 3344444 22100012334566666666655 44555
Q ss_pred hhccCCCCCcEEEeeccCCcCcccccccCCCC-CceEeccccCCCcCCCCCCCCC-------------------------
Q 018478 119 ETLDNSTSLETIHIFYCENMKILPSGLHNLRQ-LQEISIEGCGNLESFPEGGLPC------------------------- 172 (355)
Q Consensus 119 ~~~~~l~~L~~L~l~~~~~~~~~~~~~~~l~~-L~~L~l~~~~~l~~~~~~~~~~------------------------- 172 (355)
.++.+++|+.|++++|. +..+|..+..+++ |+.|++++| .+..+|..+..+
T Consensus 590 -~~~~L~~L~~L~Ls~N~-l~~lp~~l~~l~~~L~~L~Ls~N-~L~~lp~~~~~~~~~~L~~L~Ls~N~l~g~ip~l~~~ 666 (876)
T 4ecn_A 590 -AFGTNVKLTDLKLDYNQ-IEEIPEDFCAFTDQVEGLGFSHN-KLKYIPNIFNAKSVYVMGSVDFSYNKIGSEGRNISCS 666 (876)
T ss_dssp -CCCTTSEESEEECCSSC-CSCCCTTSCEECTTCCEEECCSS-CCCSCCSCCCTTCSSCEEEEECCSSCTTTTSSSCSSC
T ss_pred -hhcCCCcceEEECcCCc-cccchHHHhhccccCCEEECcCC-CCCcCchhhhccccCCCCEEECcCCcCCCccccchhh
Confidence 55556666666666655 3355555555555 666666655 344444433222
Q ss_pred ------CCcceEEEccccCcCcccccc-cCCCCCceEEEeecCc---CCCCC--C-------CCccEEEecCCcchhhhh
Q 018478 173 ------AKLKEVVIRWCGRLEALPKGL-HNLKSLQKLTIGKGGL---EEDGL--P-------TNLHSLDIRGNMEIWKSM 233 (355)
Q Consensus 173 ------~~L~~L~l~~~~~~~~~p~~l-~~~~~L~~L~l~~~~i---~~~~~--~-------~~L~~L~l~~~~~~~~~~ 233 (355)
++|+.|++++|. ++.+|..+ ..+++|+.|+++.+.+ +.... . ++|+.|++++|... .++
T Consensus 667 l~~~~~~~L~~L~Ls~N~-L~~lp~~~~~~l~~L~~L~Ls~N~L~~ip~~~~~~~~~~l~nl~~L~~L~Ls~N~L~-~lp 744 (876)
T 4ecn_A 667 MDDYKGINASTVTLSYNE-IQKFPTELFATGSPISTIILSNNLMTSIPENSLKPKDGNYKNTYLLTTIDLRFNKLT-SLS 744 (876)
T ss_dssp TTTCCCCCEEEEECCSSC-CCSCCHHHHHTTCCCSEEECCSCCCSCCCTTSSSCTTSCCTTGGGCCEEECCSSCCC-CCC
T ss_pred hccccCCCcCEEEccCCc-CCccCHHHHccCCCCCEEECCCCcCCccChHHhccccccccccCCccEEECCCCCCc-cch
Confidence 245555555532 33444433 3667777777773333 32111 1 27888888888644 444
Q ss_pred hhhcccCCCCCccceeEecccCCcccccCccccccCCCCCCCCccceEEecc------CCCcccccccCCCCCCccEEee
Q 018478 234 IEWGQGFHRFSSLRELRIEGCDDDMVSFPPEDIRMGTTLPLPTSLTSLAIFS------FPNLERLSSSIVDLQNLTSLYL 307 (355)
Q Consensus 234 ~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~------~~~l~~l~~~~~~~~~L~~L~l 307 (355)
..+. ...+++|+.|++++ +.+..+|..+ ..+++|+.|++++ +.-...+|..+..+++|++|++
T Consensus 745 ~~l~--~~~l~~L~~L~Ls~--N~L~~lp~~l-------~~L~~L~~L~Ls~N~~ls~N~l~~~ip~~l~~L~~L~~L~L 813 (876)
T 4ecn_A 745 DDFR--ATTLPYLSNMDVSY--NCFSSFPTQP-------LNSSQLKAFGIRHQRDAEGNRILRQWPTGITTCPSLIQLQI 813 (876)
T ss_dssp GGGS--TTTCTTCCEEECCS--SCCSSCCCGG-------GGCTTCCEEECCCCBCTTCCBCCCCCCTTGGGCSSCCEEEC
T ss_pred HHhh--hccCCCcCEEEeCC--CCCCccchhh-------hcCCCCCEEECCCCCCcccccccccChHHHhcCCCCCEEEC
Confidence 3221 13788999999988 5666677766 4678899999976 3334577888888999999999
Q ss_pred CCCCCCcccCCCCCCCCccEEEecCCch
Q 018478 308 VGCPKLKYFPEKGLPSSLLELWIGGCPL 335 (355)
Q Consensus 308 ~~~~~l~~~~~~~~~~~L~~L~l~~c~~ 335 (355)
++| ++..+|.. +.++|++|++++|+.
T Consensus 814 s~N-~L~~Ip~~-l~~~L~~LdLs~N~l 839 (876)
T 4ecn_A 814 GSN-DIRKVDEK-LTPQLYILDIADNPN 839 (876)
T ss_dssp CSS-CCCBCCSC-CCSSSCEEECCSCTT
T ss_pred CCC-CCCccCHh-hcCCCCEEECCCCCC
Confidence 998 68888875 558999999999974
No 7
>4fmz_A Internalin; leucine rich repeat, structural genomic center for structural genomics, JCSG, protein structure INI PSI-biology; HET: MSE; 1.91A {Listeria monocytogenes serotype 4B}
Probab=99.91 E-value=1.8e-23 Score=189.77 Aligned_cols=278 Identities=18% Similarity=0.153 Sum_probs=214.8
Q ss_pred CCCCCccEEeecccccCcccccCccCCCcceEecccCccccccccccCcCCCCCCCccccccccccEEEecCCCccchhc
Q 018478 3 DTNSSLEILEIWSCRSLTYLAAVQLPRSLKRLDIQCCSNIRTLTMEEGIQSSSSSSSRRYTSYLLEELCISSCRSLTSIF 82 (355)
Q Consensus 3 ~~~~~L~~L~l~~~~~l~~l~~~~~~~~L~~L~l~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~~~ 82 (355)
+.+++|++|++++| .++.++...-.++|++|+++++ .+..++. +..+++|++|+++++ .++.+
T Consensus 63 ~~~~~L~~L~l~~n-~i~~~~~~~~l~~L~~L~L~~n-~i~~~~~-------------~~~l~~L~~L~l~~n-~i~~~- 125 (347)
T 4fmz_A 63 EYLTNLEYLNLNGN-QITDISPLSNLVKLTNLYIGTN-KITDISA-------------LQNLTNLRELYLNED-NISDI- 125 (347)
T ss_dssp GGCTTCCEEECCSS-CCCCCGGGTTCTTCCEEECCSS-CCCCCGG-------------GTTCTTCSEEECTTS-CCCCC-
T ss_pred hhcCCccEEEccCC-ccccchhhhcCCcCCEEEccCC-cccCchH-------------HcCCCcCCEEECcCC-cccCc-
Confidence 45789999999976 6777765334499999999995 5776653 345899999999986 45555
Q ss_pred cccccchhccccccCCCCCcccEEEEccCcchhchhhhccCCCCCcEEEeeccCCcCcccccccCCCCCceEeccccCCC
Q 018478 83 SKNELSATLESLEVGNLPPSLKSLRVQGCSKLESIAETLDNSTSLETIHIFYCENMKILPSGLHNLRQLQEISIEGCGNL 162 (355)
Q Consensus 83 ~~n~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~l 162 (355)
+....+++|+.|++++|.....++. +..+++|++|++++|. +..++. +..+++|+.|++++| .+
T Consensus 126 ------------~~~~~l~~L~~L~l~~n~~~~~~~~-~~~l~~L~~L~l~~~~-~~~~~~-~~~l~~L~~L~l~~n-~l 189 (347)
T 4fmz_A 126 ------------SPLANLTKMYSLNLGANHNLSDLSP-LSNMTGLNYLTVTESK-VKDVTP-IANLTDLYSLSLNYN-QI 189 (347)
T ss_dssp ------------GGGTTCTTCCEEECTTCTTCCCCGG-GTTCTTCCEEECCSSC-CCCCGG-GGGCTTCSEEECTTS-CC
T ss_pred ------------hhhccCCceeEEECCCCCCcccccc-hhhCCCCcEEEecCCC-cCCchh-hccCCCCCEEEccCC-cc
Confidence 4455668999999999975665554 7889999999999987 555544 788999999999997 56
Q ss_pred cCCCCCCCCCCCcceEEEccccCcCcccccccCCCCCceEEEeecCc---CCCCCCCCccEEEecCCcchhhhhhhhccc
Q 018478 163 ESFPEGGLPCAKLKEVVIRWCGRLEALPKGLHNLKSLQKLTIGKGGL---EEDGLPTNLHSLDIRGNMEIWKSMIEWGQG 239 (355)
Q Consensus 163 ~~~~~~~~~~~~L~~L~l~~~~~~~~~p~~l~~~~~L~~L~l~~~~i---~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~ 239 (355)
..++. +..+++|+.+++++|. +...+. +..+++|++|+++.+.+ +....+++|+.|++++|.... ...
T Consensus 190 ~~~~~-~~~l~~L~~L~l~~n~-l~~~~~-~~~~~~L~~L~l~~n~l~~~~~~~~l~~L~~L~l~~n~l~~-~~~----- 260 (347)
T 4fmz_A 190 EDISP-LASLTSLHYFTAYVNQ-ITDITP-VANMTRLNSLKIGNNKITDLSPLANLSQLTWLEIGTNQISD-INA----- 260 (347)
T ss_dssp CCCGG-GGGCTTCCEEECCSSC-CCCCGG-GGGCTTCCEEECCSSCCCCCGGGTTCTTCCEEECCSSCCCC-CGG-----
T ss_pred ccccc-ccCCCccceeecccCC-CCCCch-hhcCCcCCEEEccCCccCCCcchhcCCCCCEEECCCCccCC-Chh-----
Confidence 66654 6678999999999964 444443 88899999999994443 335567899999999986443 322
Q ss_pred CCCCCccceeEecccCCcccccCccccccCCCCCCCCccceEEeccCCCcc-cccccCCCCCCccEEeeCCCCCCcccCC
Q 018478 240 FHRFSSLRELRIEGCDDDMVSFPPEDIRMGTTLPLPTSLTSLAIFSFPNLE-RLSSSIVDLQNLTSLYLVGCPKLKYFPE 318 (355)
Q Consensus 240 ~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~l~-~l~~~~~~~~~L~~L~l~~~~~l~~~~~ 318 (355)
+..+++|++|++++ +.+..++. + ..+++|++|++++| .++ ..+..+..+++|++|++++| +++.++.
T Consensus 261 ~~~l~~L~~L~l~~--n~l~~~~~-~-------~~l~~L~~L~L~~n-~l~~~~~~~l~~l~~L~~L~L~~n-~l~~~~~ 328 (347)
T 4fmz_A 261 VKDLTKLKMLNVGS--NQISDISV-L-------NNLSQLNSLFLNNN-QLGNEDMEVIGGLTNLTTLFLSQN-HITDIRP 328 (347)
T ss_dssp GTTCTTCCEEECCS--SCCCCCGG-G-------GGCTTCSEEECCSS-CCCGGGHHHHHTCTTCSEEECCSS-SCCCCGG
T ss_pred HhcCCCcCEEEccC--CccCCChh-h-------cCCCCCCEEECcCC-cCCCcChhHhhccccCCEEEccCC-ccccccC
Confidence 77899999999998 46666643 3 46789999999996 454 44556788999999999999 6888766
Q ss_pred CCCCCCccEEEecCCc
Q 018478 319 KGLPSSLLELWIGGCP 334 (355)
Q Consensus 319 ~~~~~~L~~L~l~~c~ 334 (355)
...+++|++|++.+|+
T Consensus 329 ~~~l~~L~~L~l~~N~ 344 (347)
T 4fmz_A 329 LASLSKMDSADFANQV 344 (347)
T ss_dssp GGGCTTCSEESSSCC-
T ss_pred hhhhhccceeehhhhc
Confidence 4457999999999886
No 8
>4eco_A Uncharacterized protein; leucine-rich repeats, protein binding, structural genomics, center for structural genomics, JCSG; 2.70A {Bacteroides eggerthii dsm 20697}
Probab=99.91 E-value=1.1e-23 Score=206.16 Aligned_cols=218 Identities=17% Similarity=0.145 Sum_probs=135.6
Q ss_pred CcccEEEEccCcchhchhhhccCCCC-CcEEEeeccCCcCcccccccCCC--CCceEeccccCCCcCCCCCCC-------
Q 018478 101 PSLKSLRVQGCSKLESIAETLDNSTS-LETIHIFYCENMKILPSGLHNLR--QLQEISIEGCGNLESFPEGGL------- 170 (355)
Q Consensus 101 ~~L~~L~l~~~~~~~~~~~~~~~l~~-L~~L~l~~~~~~~~~~~~~~~l~--~L~~L~l~~~~~l~~~~~~~~------- 170 (355)
++|+.|++++|. +..+|..+..+++ |++|++++|. +..+|..+..+. +|+.|++++|......|..+.
T Consensus 353 ~~L~~L~L~~N~-l~~lp~~l~~l~~~L~~L~Ls~N~-l~~lp~~~~~~~l~~L~~L~Ls~N~l~~~~p~~l~~~~~~~~ 430 (636)
T 4eco_A 353 IKLASLNLAYNQ-ITEIPANFCGFTEQVENLSFAHNK-LKYIPNIFDAKSVSVMSAIDFSYNEIGSVDGKNFDPLDPTPF 430 (636)
T ss_dssp EEESEEECCSSE-EEECCTTSEEECTTCCEEECCSSC-CSSCCSCCCTTCSSCEEEEECCSSCTTTTTTCSSCTTCSSCC
T ss_pred CCCCEEECCCCc-cccccHhhhhhcccCcEEEccCCc-CcccchhhhhcccCccCEEECcCCcCCCcchhhhcccccccc
Confidence 344555554444 3344444555555 5555555555 335554444332 555666655533333344444
Q ss_pred CCCCcceEEEccccCcCcccccc-cCCCCCceEEEeecCcC---CCCC--C-------CCccEEEecCCcchhhhhhhhc
Q 018478 171 PCAKLKEVVIRWCGRLEALPKGL-HNLKSLQKLTIGKGGLE---EDGL--P-------TNLHSLDIRGNMEIWKSMIEWG 237 (355)
Q Consensus 171 ~~~~L~~L~l~~~~~~~~~p~~l-~~~~~L~~L~l~~~~i~---~~~~--~-------~~L~~L~l~~~~~~~~~~~~~~ 237 (355)
.+++|+.|++++|. ++.+|..+ ..+++|++|+++.+.+. .... . ++|+.|++++|... .++..+.
T Consensus 431 ~~~~L~~L~Ls~N~-l~~lp~~~~~~l~~L~~L~Ls~N~l~~i~~~~~~~~~~~~~~l~~L~~L~Ls~N~l~-~lp~~~~ 508 (636)
T 4eco_A 431 KGINVSSINLSNNQ-ISKFPKELFSTGSPLSSINLMGNMLTEIPKNSLKDENENFKNTYLLTSIDLRFNKLT-KLSDDFR 508 (636)
T ss_dssp CCCCEEEEECCSSC-CCSCCTHHHHTTCCCSEEECCSSCCSBCCSSSSEETTEECTTGGGCCEEECCSSCCC-BCCGGGS
T ss_pred cCCCCCEEECcCCc-cCcCCHHHHccCCCCCEEECCCCCCCCcCHHHhccccccccccCCccEEECcCCcCC-ccChhhh
Confidence 44566666666643 34555433 45677777777733333 2111 1 17888888887644 4443221
Q ss_pred ccCCCCCccceeEecccCCcccccCccccccCCCCCCCCccceEEecc------CCCcccccccCCCCCCccEEeeCCCC
Q 018478 238 QGFHRFSSLRELRIEGCDDDMVSFPPEDIRMGTTLPLPTSLTSLAIFS------FPNLERLSSSIVDLQNLTSLYLVGCP 311 (355)
Q Consensus 238 ~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~------~~~l~~l~~~~~~~~~L~~L~l~~~~ 311 (355)
...+++|++|++++ +.+..+|... ..+++|++|++++ +.....+|..+..+++|++|++++|
T Consensus 509 --~~~l~~L~~L~Ls~--N~l~~ip~~~-------~~l~~L~~L~Ls~N~~ls~N~l~~~~p~~l~~l~~L~~L~Ls~N- 576 (636)
T 4eco_A 509 --ATTLPYLVGIDLSY--NSFSKFPTQP-------LNSSTLKGFGIRNQRDAQGNRTLREWPEGITLCPSLTQLQIGSN- 576 (636)
T ss_dssp --TTTCTTCCEEECCS--SCCSSCCCGG-------GGCSSCCEEECCSCBCTTCCBCCCCCCTTGGGCSSCCEEECCSS-
T ss_pred --hccCCCcCEEECCC--CCCCCcChhh-------hcCCCCCEEECCCCcccccCcccccChHHHhcCCCCCEEECCCC-
Confidence 14788999999988 5666687766 4678999999954 3335577888888999999999998
Q ss_pred CCcccCCCCCCCCccEEEecCCch
Q 018478 312 KLKYFPEKGLPSSLLELWIGGCPL 335 (355)
Q Consensus 312 ~l~~~~~~~~~~~L~~L~l~~c~~ 335 (355)
+++.+|.. +.++|++|++++|+.
T Consensus 577 ~l~~ip~~-~~~~L~~L~Ls~N~l 599 (636)
T 4eco_A 577 DIRKVNEK-ITPNISVLDIKDNPN 599 (636)
T ss_dssp CCCBCCSC-CCTTCCEEECCSCTT
T ss_pred cCCccCHh-HhCcCCEEECcCCCC
Confidence 68888865 558999999999963
No 9
>4eco_A Uncharacterized protein; leucine-rich repeats, protein binding, structural genomics, center for structural genomics, JCSG; 2.70A {Bacteroides eggerthii dsm 20697}
Probab=99.91 E-value=1.2e-23 Score=205.81 Aligned_cols=297 Identities=14% Similarity=0.190 Sum_probs=207.0
Q ss_pred CCCCccEEeecccccCcccccCcc-CCCcceEecccCcccc--ccccccCcCCCCCCCccccccccccEEEecCCCccch
Q 018478 4 TNSSLEILEIWSCRSLTYLAAVQL-PRSLKRLDIQCCSNIR--TLTMEEGIQSSSSSSSRRYTSYLLEELCISSCRSLTS 80 (355)
Q Consensus 4 ~~~~L~~L~l~~~~~l~~l~~~~~-~~~L~~L~l~~~~~l~--~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~ 80 (355)
++++|++|++++|.....+|..-. .++|++|+++++..+. .+|..++-- ..+..+++|++|+++++ .++.
T Consensus 247 ~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~Ls~n~~l~~~~lp~~~~~L------~~~~~l~~L~~L~L~~n-~l~~ 319 (636)
T 4eco_A 247 NLKDLTDVEVYNCPNLTKLPTFLKALPEMQLINVACNRGISGEQLKDDWQAL------ADAPVGEKIQIIYIGYN-NLKT 319 (636)
T ss_dssp GCTTCCEEEEECCTTCSSCCTTTTTCSSCCEEECTTCTTSCHHHHHHHHHHH------HHSGGGGTCCEEECCSS-CCSS
T ss_pred ccCCCCEEEecCCcCCccChHHHhcCCCCCEEECcCCCCCccccchHHHHhh------hccccCCCCCEEECCCC-cCCc
Confidence 789999999998865555553222 2899999999965355 466543100 00112478899998876 3445
Q ss_pred hccccccchhcccccc---CCCCCcccEEEEccCcchh-chhhhccCCCCCcEEEeeccCCcCcccccccCCCC-CceEe
Q 018478 81 IFSKNELSATLESLEV---GNLPPSLKSLRVQGCSKLE-SIAETLDNSTSLETIHIFYCENMKILPSGLHNLRQ-LQEIS 155 (355)
Q Consensus 81 ~~~~n~~~~~~~~~~~---~~~~~~L~~L~l~~~~~~~-~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~l~~-L~~L~ 155 (355)
+ |. ...+++|+.|++++|. +. .+| .++.+++|++|++++|. +..+|..+..+++ |+.|+
T Consensus 320 i-------------p~~~~l~~l~~L~~L~L~~N~-l~g~ip-~~~~l~~L~~L~L~~N~-l~~lp~~l~~l~~~L~~L~ 383 (636)
T 4eco_A 320 F-------------PVETSLQKMKKLGMLECLYNQ-LEGKLP-AFGSEIKLASLNLAYNQ-ITEIPANFCGFTEQVENLS 383 (636)
T ss_dssp C-------------CCHHHHTTCTTCCEEECCSCC-CEEECC-CCEEEEEESEEECCSSE-EEECCTTSEEECTTCCEEE
T ss_pred c-------------CchhhhccCCCCCEEeCcCCc-Cccchh-hhCCCCCCCEEECCCCc-cccccHhhhhhcccCcEEE
Confidence 5 54 3556789999998887 55 777 77788899999998887 6678888888888 99999
Q ss_pred ccccCCCcCCCCCCCCCC--CcceEEEccccCcCccccccc-------CCCCCceEEEeecCcCCCC-----CCCCccEE
Q 018478 156 IEGCGNLESFPEGGLPCA--KLKEVVIRWCGRLEALPKGLH-------NLKSLQKLTIGKGGLEEDG-----LPTNLHSL 221 (355)
Q Consensus 156 l~~~~~l~~~~~~~~~~~--~L~~L~l~~~~~~~~~p~~l~-------~~~~L~~L~l~~~~i~~~~-----~~~~L~~L 221 (355)
+++| .+..+|..+..+. +|+.|++++|......|..+. .+++|++|+++.+.+.... .+++|+.|
T Consensus 384 Ls~N-~l~~lp~~~~~~~l~~L~~L~Ls~N~l~~~~p~~l~~~~~~~~~~~~L~~L~Ls~N~l~~lp~~~~~~l~~L~~L 462 (636)
T 4eco_A 384 FAHN-KLKYIPNIFDAKSVSVMSAIDFSYNEIGSVDGKNFDPLDPTPFKGINVSSINLSNNQISKFPKELFSTGSPLSSI 462 (636)
T ss_dssp CCSS-CCSSCCSCCCTTCSSCEEEEECCSSCTTTTTTCSSCTTCSSCCCCCCEEEEECCSSCCCSCCTHHHHTTCCCSEE
T ss_pred ccCC-cCcccchhhhhcccCccCEEECcCCcCCCcchhhhcccccccccCCCCCEEECcCCccCcCCHHHHccCCCCCEE
Confidence 9887 5667887666543 889999988776666666676 7778888888855444322 35788999
Q ss_pred EecCCcchhhhhhhhcc----cCCCCCccceeEecccCCcccccCccccccCCCCC--CCCccceEEeccCCCccccccc
Q 018478 222 DIRGNMEIWKSMIEWGQ----GFHRFSSLRELRIEGCDDDMVSFPPEDIRMGTTLP--LPTSLTSLAIFSFPNLERLSSS 295 (355)
Q Consensus 222 ~l~~~~~~~~~~~~~~~----~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~--~~~~L~~L~l~~~~~l~~l~~~ 295 (355)
++++|... .++..... .+.++++|++|++++ +.++.+|... . .+++|++|++++ +.++.+|..
T Consensus 463 ~Ls~N~l~-~i~~~~~~~~~~~~~~l~~L~~L~Ls~--N~l~~lp~~~-------~~~~l~~L~~L~Ls~-N~l~~ip~~ 531 (636)
T 4eco_A 463 NLMGNMLT-EIPKNSLKDENENFKNTYLLTSIDLRF--NKLTKLSDDF-------RATTLPYLVGIDLSY-NSFSKFPTQ 531 (636)
T ss_dssp ECCSSCCS-BCCSSSSEETTEECTTGGGCCEEECCS--SCCCBCCGGG-------STTTCTTCCEEECCS-SCCSSCCCG
T ss_pred ECCCCCCC-CcCHHHhccccccccccCCccEEECcC--CcCCccChhh-------hhccCCCcCEEECCC-CCCCCcChh
Confidence 99888744 33332210 011233888999988 5666787665 3 567889999998 577778888
Q ss_pred CCCCCCccEEeeCCCC-----C-CcccCCC-CCCCCccEEEecCCch
Q 018478 296 IVDLQNLTSLYLVGCP-----K-LKYFPEK-GLPSSLLELWIGGCPL 335 (355)
Q Consensus 296 ~~~~~~L~~L~l~~~~-----~-l~~~~~~-~~~~~L~~L~l~~c~~ 335 (355)
+..+++|++|++++|. + ...+|.. +-+++|++|++++|.-
T Consensus 532 ~~~l~~L~~L~Ls~N~~ls~N~l~~~~p~~l~~l~~L~~L~Ls~N~l 578 (636)
T 4eco_A 532 PLNSSTLKGFGIRNQRDAQGNRTLREWPEGITLCPSLTQLQIGSNDI 578 (636)
T ss_dssp GGGCSSCCEEECCSCBCTTCCBCCCCCCTTGGGCSSCCEEECCSSCC
T ss_pred hhcCCCCCEEECCCCcccccCcccccChHHHhcCCCCCEEECCCCcC
Confidence 8888999999985432 2 3334432 1268899999888864
No 10
>3t6q_A CD180 antigen; protein-protein complex, leucine rich repeat, MD-2 related L recognition, receptor, innate immunity, glycosylation, IMMU; HET: NAG BMA MAN; 1.90A {Mus musculus} PDB: 3b2d_A* 3rg1_A*
Probab=99.91 E-value=1.2e-22 Score=197.97 Aligned_cols=222 Identities=15% Similarity=0.100 Sum_probs=127.9
Q ss_pred CCCcccEEEEccCcchhchhhhccCCCCCcEEEeeccCCcCcccccccCCCCCceEeccccCCCcCCCC-CCCCCCCcce
Q 018478 99 LPPSLKSLRVQGCSKLESIAETLDNSTSLETIHIFYCENMKILPSGLHNLRQLQEISIEGCGNLESFPE-GGLPCAKLKE 177 (355)
Q Consensus 99 ~~~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~l~~~~~-~~~~~~~L~~ 177 (355)
.+++|+.|++++|. +..+|..+..+++|++|++++|......+..+..+++|+.|++++|.....+|. .+..+++|++
T Consensus 276 ~l~~L~~L~l~~n~-l~~lp~~l~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~~l~~L~~ 354 (606)
T 3t6q_A 276 CFSGLQELDLTATH-LSELPSGLVGLSTLKKLVLSANKFENLCQISASNFPSLTHLSIKGNTKRLELGTGCLENLENLRE 354 (606)
T ss_dssp TCTTCSEEECTTSC-CSCCCSSCCSCTTCCEEECTTCCCSBGGGGCGGGCTTCSEEECCSCSSCCBCCSSTTTTCTTCCE
T ss_pred cccCCCEEeccCCc-cCCCChhhcccccCCEEECccCCcCcCchhhhhccCcCCEEECCCCCcccccchhhhhccCcCCE
Confidence 34677888887776 667777777778888888887763333455677777777777777644334443 3566777777
Q ss_pred EEEccccCcCcc--cccccCCCCCceEEEeecCcC-----CCCCCCCccEEEecCCcchhhhhhhhcccCCCCCccceeE
Q 018478 178 VVIRWCGRLEAL--PKGLHNLKSLQKLTIGKGGLE-----EDGLPTNLHSLDIRGNMEIWKSMIEWGQGFHRFSSLRELR 250 (355)
Q Consensus 178 L~l~~~~~~~~~--p~~l~~~~~L~~L~l~~~~i~-----~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~l~~L~~L~ 250 (355)
|++++|...... +..+..+++|++|+++.+.+. ....+++|+.|++++|......+.. . +..+++|++|+
T Consensus 355 L~l~~n~l~~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~-~--~~~l~~L~~L~ 431 (606)
T 3t6q_A 355 LDLSHDDIETSDCCNLQLRNLSHLQSLNLSYNEPLSLKTEAFKECPQLELLDLAFTRLKVKDAQS-P--FQNLHLLKVLN 431 (606)
T ss_dssp EECCSSCCCEEEESTTTTTTCTTCCEEECCSCSCEEECTTTTTTCTTCSEEECTTCCEECCTTCC-T--TTTCTTCCEEE
T ss_pred EECCCCccccccCcchhcccCCCCCEEECCCCcCCcCCHHHhcCCccCCeEECCCCcCCCcccch-h--hhCcccCCEEE
Confidence 777775433222 456677777777777633221 1234567777777766543322211 1 45666677777
Q ss_pred ecccCCcccccCccccccCCCCCCCCccceEEeccCCCccc--c--cccCCCCCCccEEeeCCCCCCcccCCCCC--CCC
Q 018478 251 IEGCDDDMVSFPPEDIRMGTTLPLPTSLTSLAIFSFPNLER--L--SSSIVDLQNLTSLYLVGCPKLKYFPEKGL--PSS 324 (355)
Q Consensus 251 l~~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~--l--~~~~~~~~~L~~L~l~~~~~l~~~~~~~~--~~~ 324 (355)
+++ | .+...+...+ ..+++|++|+++++ .+.. + +..+..+++|++|++++| +++.++...+ +++
T Consensus 432 l~~-n-~l~~~~~~~~------~~l~~L~~L~L~~n-~l~~~~~~~~~~~~~l~~L~~L~Ls~n-~l~~~~~~~~~~l~~ 501 (606)
T 3t6q_A 432 LSH-S-LLDISSEQLF------DGLPALQHLNLQGN-HFPKGNIQKTNSLQTLGRLEILVLSFC-DLSSIDQHAFTSLKM 501 (606)
T ss_dssp CTT-C-CCBTTCTTTT------TTCTTCCEEECTTC-BCGGGEECSSCGGGGCTTCCEEECTTS-CCCEECTTTTTTCTT
T ss_pred CCC-C-ccCCcCHHHH------hCCCCCCEEECCCC-CCCccccccchhhccCCCccEEECCCC-ccCccChhhhccccC
Confidence 766 2 3333322211 34556666666663 3332 1 123455666666666665 4555543332 456
Q ss_pred ccEEEecCCc
Q 018478 325 LLELWIGGCP 334 (355)
Q Consensus 325 L~~L~l~~c~ 334 (355)
|++|++++|.
T Consensus 502 L~~L~Ls~N~ 511 (606)
T 3t6q_A 502 MNHVDLSHNR 511 (606)
T ss_dssp CCEEECCSSC
T ss_pred CCEEECCCCc
Confidence 6666666553
No 11
>2id5_A Lingo-1, leucine rich repeat neuronal 6A; CNS-specific LRR-IG containing, ligand binding protein,membr protein; HET: NAG MAN; 2.70A {Homo sapiens}
Probab=99.90 E-value=2.1e-22 Score=190.58 Aligned_cols=282 Identities=17% Similarity=0.165 Sum_probs=217.3
Q ss_pred cEEeecccccCcccccCccCCCcceEecccCccccccccccCcCCCCCCCccccccccccEEEecCCCccchhccccccc
Q 018478 9 EILEIWSCRSLTYLAAVQLPRSLKRLDIQCCSNIRTLTMEEGIQSSSSSSSRRYTSYLLEELCISSCRSLTSIFSKNELS 88 (355)
Q Consensus 9 ~~L~l~~~~~l~~l~~~~~~~~L~~L~l~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~~~~~n~~~ 88 (355)
+.++..+ ..++.+| ..+++++++|++++ +.++.++... |..+++|++|+++++ .++.+
T Consensus 14 ~~v~c~~-~~l~~ip-~~~~~~l~~L~L~~-n~l~~~~~~~-----------~~~l~~L~~L~L~~n-~i~~~------- 71 (477)
T 2id5_A 14 RAVLCHR-KRFVAVP-EGIPTETRLLDLGK-NRIKTLNQDE-----------FASFPHLEELELNEN-IVSAV------- 71 (477)
T ss_dssp TEEECCS-CCCSSCC-SCCCTTCSEEECCS-SCCCEECTTT-----------TTTCTTCCEEECTTS-CCCEE-------
T ss_pred CEEEeCC-CCcCcCC-CCCCCCCcEEECCC-CccceECHhH-----------ccCCCCCCEEECCCC-ccCEe-------
Confidence 4566653 4677787 45678999999999 5677776543 567999999999986 44443
Q ss_pred hhcccccc--CCCCCcccEEEEccCcchhchhh-hccCCCCCcEEEeeccCCcCcccccccCCCCCceEeccccCCCcCC
Q 018478 89 ATLESLEV--GNLPPSLKSLRVQGCSKLESIAE-TLDNSTSLETIHIFYCENMKILPSGLHNLRQLQEISIEGCGNLESF 165 (355)
Q Consensus 89 ~~~~~~~~--~~~~~~L~~L~l~~~~~~~~~~~-~~~~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~l~~~ 165 (355)
.. ...+++|++|++++|. +..+|. .+..+++|++|++++|......+..+..+++|+.|++++|......
T Consensus 72 ------~~~~~~~l~~L~~L~L~~n~-l~~~~~~~~~~l~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~l~~n~l~~~~ 144 (477)
T 2id5_A 72 ------EPGAFNNLFNLRTLGLRSNR-LKLIPLGVFTGLSNLTKLDISENKIVILLDYMFQDLYNLKSLEVGDNDLVYIS 144 (477)
T ss_dssp ------CTTTTTTCTTCCEEECCSSC-CCSCCTTSSTTCTTCCEEECTTSCCCEECTTTTTTCTTCCEEEECCTTCCEEC
T ss_pred ------ChhhhhCCccCCEEECCCCc-CCccCcccccCCCCCCEEECCCCccccCChhHccccccCCEEECCCCccceeC
Confidence 22 2455899999999988 777765 4688999999999999855555678899999999999997433334
Q ss_pred CCCCCCCCCcceEEEccccCcCccc-ccccCCCCCceEEEeecCcC---C--CCCCCCccEEEecCCcchhhhhhhhccc
Q 018478 166 PEGGLPCAKLKEVVIRWCGRLEALP-KGLHNLKSLQKLTIGKGGLE---E--DGLPTNLHSLDIRGNMEIWKSMIEWGQG 239 (355)
Q Consensus 166 ~~~~~~~~~L~~L~l~~~~~~~~~p-~~l~~~~~L~~L~l~~~~i~---~--~~~~~~L~~L~l~~~~~~~~~~~~~~~~ 239 (355)
+..+..+++|++|++++|. ++.++ ..+..+++|+.|+++.+.+. . ...+++|+.|++++|......+..
T Consensus 145 ~~~~~~l~~L~~L~l~~n~-l~~~~~~~l~~l~~L~~L~l~~n~i~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~---- 219 (477)
T 2id5_A 145 HRAFSGLNSLEQLTLEKCN-LTSIPTEALSHLHGLIVLRLRHLNINAIRDYSFKRLYRLKVLEISHWPYLDTMTPN---- 219 (477)
T ss_dssp TTSSTTCTTCCEEEEESCC-CSSCCHHHHTTCTTCCEEEEESCCCCEECTTCSCSCTTCCEEEEECCTTCCEECTT----
T ss_pred hhhccCCCCCCEEECCCCc-CcccChhHhcccCCCcEEeCCCCcCcEeChhhcccCcccceeeCCCCccccccCcc----
Confidence 5677889999999999975 45554 56899999999999944333 2 345689999999998876655543
Q ss_pred CCCCCccceeEecccCCcccccCccccccCCCCCCCCccceEEeccCCCcccccc-cCCCCCCccEEeeCCCCCCcccCC
Q 018478 240 FHRFSSLRELRIEGCDDDMVSFPPEDIRMGTTLPLPTSLTSLAIFSFPNLERLSS-SIVDLQNLTSLYLVGCPKLKYFPE 318 (355)
Q Consensus 240 ~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~l~~-~~~~~~~L~~L~l~~~~~l~~~~~ 318 (355)
.....+|++|++++ +.++.++...+ ..+++|+.|++++ +.++.++. .+..+++|++|++++| +++.++.
T Consensus 220 ~~~~~~L~~L~l~~--n~l~~~~~~~~------~~l~~L~~L~Ls~-n~l~~~~~~~~~~l~~L~~L~L~~n-~l~~~~~ 289 (477)
T 2id5_A 220 CLYGLNLTSLSITH--CNLTAVPYLAV------RHLVYLRFLNLSY-NPISTIEGSMLHELLRLQEIQLVGG-QLAVVEP 289 (477)
T ss_dssp TTTTCCCSEEEEES--SCCCSCCHHHH------TTCTTCCEEECCS-SCCCEECTTSCTTCTTCCEEECCSS-CCSEECT
T ss_pred cccCccccEEECcC--CcccccCHHHh------cCccccCeeECCC-CcCCccChhhccccccCCEEECCCC-ccceECH
Confidence 33445999999998 57778885443 5678999999999 56776654 5688999999999998 7888866
Q ss_pred CCC--CCCccEEEecCCc
Q 018478 319 KGL--PSSLLELWIGGCP 334 (355)
Q Consensus 319 ~~~--~~~L~~L~l~~c~ 334 (355)
..+ +++|++|++++|.
T Consensus 290 ~~~~~l~~L~~L~L~~N~ 307 (477)
T 2id5_A 290 YAFRGLNYLRVLNVSGNQ 307 (477)
T ss_dssp TTBTTCTTCCEEECCSSC
T ss_pred HHhcCcccCCEEECCCCc
Confidence 544 6999999999874
No 12
>3o6n_A APL1; leucine-rich repeat, protein binding; HET: NAG; 1.85A {Anopheles gambiae}
Probab=99.90 E-value=4.2e-23 Score=190.36 Aligned_cols=282 Identities=15% Similarity=0.111 Sum_probs=182.8
Q ss_pred CCCccEEeecccccCcccccCccC--CCcceEecccCccccccccccCcCCCCCCCccccccccccEEEecCCCccchhc
Q 018478 5 NSSLEILEIWSCRSLTYLAAVQLP--RSLKRLDIQCCSNIRTLTMEEGIQSSSSSSSRRYTSYLLEELCISSCRSLTSIF 82 (355)
Q Consensus 5 ~~~L~~L~l~~~~~l~~l~~~~~~--~~L~~L~l~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~~~ 82 (355)
+++++.|++.++ .++.++...+. ++|++|+++++ .+..++... +..+++|++|+++++. ++.+
T Consensus 44 l~~l~~l~l~~~-~l~~l~~~~~~~l~~L~~L~L~~n-~i~~~~~~~-----------~~~l~~L~~L~L~~n~-l~~~- 108 (390)
T 3o6n_A 44 LNNQKIVTFKNS-TMRKLPAALLDSFRQVELLNLNDL-QIEEIDTYA-----------FAYAHTIQKLYMGFNA-IRYL- 108 (390)
T ss_dssp GCCCSEEEEESC-EESEECTHHHHHCCCCSEEECTTS-CCCEECTTT-----------TTTCTTCCEEECCSSC-CCCC-
T ss_pred cCCceEEEecCC-chhhCChhHhcccccCcEEECCCC-cccccChhh-----------ccCCCCcCEEECCCCC-CCcC-
Confidence 467888888754 46666654333 78888888874 466655432 4557778888887653 3333
Q ss_pred cccccchhccccccC--CCCCcccEEEEccCcchhchhhh-ccCCCCCcEEEeeccCCcCcccccccCCCCCceEecccc
Q 018478 83 SKNELSATLESLEVG--NLPPSLKSLRVQGCSKLESIAET-LDNSTSLETIHIFYCENMKILPSGLHNLRQLQEISIEGC 159 (355)
Q Consensus 83 ~~n~~~~~~~~~~~~--~~~~~L~~L~l~~~~~~~~~~~~-~~~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~ 159 (355)
+.. ..+++|+.|++++|. +..+|.. +..+++|++|++++|......+..+..+++|+.|++++|
T Consensus 109 ------------~~~~~~~l~~L~~L~L~~n~-l~~l~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~l~~n 175 (390)
T 3o6n_A 109 ------------PPHVFQNVPLLTVLVLERND-LSSLPRGIFHNTPKLTTLSMSNNNLERIEDDTFQATTSLQNLQLSSN 175 (390)
T ss_dssp ------------CTTTTTTCTTCCEEECCSSC-CCCCCTTTTTTCTTCCEEECCSSCCCBCCTTTTSSCTTCCEEECCSS
T ss_pred ------------CHHHhcCCCCCCEEECCCCc-cCcCCHHHhcCCCCCcEEECCCCccCccChhhccCCCCCCEEECCCC
Confidence 221 344677777777776 6666644 466777777777777633333445677777777777776
Q ss_pred CCCcCCCCCCCCCCCcceEEEcccc------------------CcCcccccccCCCCCceEEEeecCcC---CCCCCCCc
Q 018478 160 GNLESFPEGGLPCAKLKEVVIRWCG------------------RLEALPKGLHNLKSLQKLTIGKGGLE---EDGLPTNL 218 (355)
Q Consensus 160 ~~l~~~~~~~~~~~~L~~L~l~~~~------------------~~~~~p~~l~~~~~L~~L~l~~~~i~---~~~~~~~L 218 (355)
.++.++ +..+++|+.+++++|. .++.+|. ...++|++|+++.+.+. ....+++|
T Consensus 176 -~l~~~~--~~~l~~L~~L~l~~n~l~~~~~~~~L~~L~l~~n~l~~~~~--~~~~~L~~L~l~~n~l~~~~~l~~l~~L 250 (390)
T 3o6n_A 176 -RLTHVD--LSLIPSLFHANVSYNLLSTLAIPIAVEELDASHNSINVVRG--PVNVELTILKLQHNNLTDTAWLLNYPGL 250 (390)
T ss_dssp -CCSBCC--GGGCTTCSEEECCSSCCSEEECCSSCSEEECCSSCCCEEEC--CCCSSCCEEECCSSCCCCCGGGGGCTTC
T ss_pred -cCCccc--cccccccceeecccccccccCCCCcceEEECCCCeeeeccc--cccccccEEECCCCCCcccHHHcCCCCc
Confidence 344332 2223444444444421 2222322 22356777777743333 23456788
Q ss_pred cEEEecCCcchhhhhhhhcccCCCCCccceeEecccCCcccccCccccccCCCCCCCCccceEEeccCCCcccccccCCC
Q 018478 219 HSLDIRGNMEIWKSMIEWGQGFHRFSSLRELRIEGCDDDMVSFPPEDIRMGTTLPLPTSLTSLAIFSFPNLERLSSSIVD 298 (355)
Q Consensus 219 ~~L~l~~~~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~l~~~~~~ 298 (355)
+.|++++|......+. . +..+++|++|++++ +.++.++... ..+++|++|++++ +.++.+|..+..
T Consensus 251 ~~L~Ls~n~l~~~~~~--~--~~~l~~L~~L~L~~--n~l~~~~~~~-------~~l~~L~~L~L~~-n~l~~~~~~~~~ 316 (390)
T 3o6n_A 251 VEVDLSYNELEKIMYH--P--FVKMQRLERLYISN--NRLVALNLYG-------QPIPTLKVLDLSH-NHLLHVERNQPQ 316 (390)
T ss_dssp SEEECCSSCCCEEESG--G--GTTCSSCCEEECCS--SCCCEEECSS-------SCCTTCCEEECCS-SCCCCCGGGHHH
T ss_pred cEEECCCCcCCCcChh--H--ccccccCCEEECCC--CcCcccCccc-------CCCCCCCEEECCC-CcceecCccccc
Confidence 8888888764432222 1 67888899999988 5666666544 4567899999998 578888877778
Q ss_pred CCCccEEeeCCCCCCcccCCCCCCCCccEEEecCCch
Q 018478 299 LQNLTSLYLVGCPKLKYFPEKGLPSSLLELWIGGCPL 335 (355)
Q Consensus 299 ~~~L~~L~l~~~~~l~~~~~~~~~~~L~~L~l~~c~~ 335 (355)
+++|++|++++| +++.++. ..+++|++|++.+++.
T Consensus 317 l~~L~~L~L~~N-~i~~~~~-~~~~~L~~L~l~~N~~ 351 (390)
T 3o6n_A 317 FDRLENLYLDHN-SIVTLKL-STHHTLKNLTLSHNDW 351 (390)
T ss_dssp HTTCSEEECCSS-CCCCCCC-CTTCCCSEEECCSSCE
T ss_pred cCcCCEEECCCC-ccceeCc-hhhccCCEEEcCCCCc
Confidence 899999999998 6888864 3468999999998874
No 13
>2z7x_B TOLL-like receptor 1, variable lymphocyte recepto; TLR2, TLR1, lipopeptide, innate immunity, glycoPro immune response, inflammatory response, leucine-rich repeat membrane, receptor; HET: NAG NDG MAN BMA PCJ; 2.10A {Homo sapiens}
Probab=99.90 E-value=2.4e-22 Score=192.21 Aligned_cols=150 Identities=19% Similarity=0.231 Sum_probs=92.0
Q ss_pred CCCCcceEEEccccCcCcccccccCCCCCceEEEeecCcCC-------CCCCCCccEEEecCCcchhhhhhhhcccCCCC
Q 018478 171 PCAKLKEVVIRWCGRLEALPKGLHNLKSLQKLTIGKGGLEE-------DGLPTNLHSLDIRGNMEIWKSMIEWGQGFHRF 243 (355)
Q Consensus 171 ~~~~L~~L~l~~~~~~~~~p~~l~~~~~L~~L~l~~~~i~~-------~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~l 243 (355)
.+++|+.|++++|......|..++.+++|++|+++.+.+.. ...+++|+.|++++|......+.. . +..+
T Consensus 322 ~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~l~~~~~~~~~l~~L~~L~Ls~N~l~~~l~~~-~--~~~l 398 (520)
T 2z7x_B 322 KISPFLHLDFSNNLLTDTVFENCGHLTELETLILQMNQLKELSKIAEMTTQMKSLQQLDISQNSVSYDEKKG-D--CSWT 398 (520)
T ss_dssp SCCCCCEEECCSSCCCTTTTTTCCCCSSCCEEECCSSCCCBHHHHHHHHTTCTTCCEEECCSSCCBCCGGGC-S--CCCC
T ss_pred hCCcccEEEeECCccChhhhhhhccCCCCCEEEccCCccCccccchHHHhhCCCCCEEECCCCcCCcccccc-h--hccC
Confidence 34455555555544333344555555555555555333321 234455556666555433222221 1 4455
Q ss_pred CccceeEecccCCcccccCccccccCCCCCCCCccceEEeccCCCcccccccCCCCCCccEEeeCCCCCCcccCCCCC--
Q 018478 244 SSLRELRIEGCDDDMVSFPPEDIRMGTTLPLPTSLTSLAIFSFPNLERLSSSIVDLQNLTSLYLVGCPKLKYFPEKGL-- 321 (355)
Q Consensus 244 ~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~l~~~~~~~~~L~~L~l~~~~~l~~~~~~~~-- 321 (355)
++|++|++++ |.-...++. ..+++|+.|++++ +.++.+|..+..+++|++|++++| +++.+|...+
T Consensus 399 ~~L~~L~Ls~-N~l~~~~~~---------~l~~~L~~L~Ls~-N~l~~ip~~~~~l~~L~~L~L~~N-~l~~l~~~~~~~ 466 (520)
T 2z7x_B 399 KSLLSLNMSS-NILTDTIFR---------CLPPRIKVLDLHS-NKIKSIPKQVVKLEALQELNVASN-QLKSVPDGIFDR 466 (520)
T ss_dssp TTCCEEECCS-SCCCGGGGG---------SCCTTCCEEECCS-SCCCCCCGGGGGCTTCCEEECCSS-CCCCCCTTTTTT
T ss_pred ccCCEEECcC-CCCCcchhh---------hhcccCCEEECCC-CcccccchhhhcCCCCCEEECCCC-cCCccCHHHhcc
Confidence 6666666665 222222222 1236899999998 588899988889999999999998 8999987533
Q ss_pred CCCccEEEecCCch
Q 018478 322 PSSLLELWIGGCPL 335 (355)
Q Consensus 322 ~~~L~~L~l~~c~~ 335 (355)
+++|++|++.+++.
T Consensus 467 l~~L~~L~l~~N~~ 480 (520)
T 2z7x_B 467 LTSLQKIWLHTNPW 480 (520)
T ss_dssp CTTCCEEECCSSCB
T ss_pred CCcccEEECcCCCC
Confidence 68999999998763
No 14
>3a79_B TLR6, VLRB.59, TOLL-like receptor 6, variable lymphocyte recepto; diacyl lipopeptide, innate immunity, Leu repeat, cell membrane, cytoplasmic vesicle; HET: PXS NAG BMA NDG; 2.90A {Mus musculus}
Probab=99.90 E-value=2.2e-22 Score=194.34 Aligned_cols=149 Identities=19% Similarity=0.219 Sum_probs=87.6
Q ss_pred CCCcceEEEccccCcCcccccccCCCCCceEEEeecCcCC-------CCCCCCccEEEecCCcchhhhhhhhcccCCCCC
Q 018478 172 CAKLKEVVIRWCGRLEALPKGLHNLKSLQKLTIGKGGLEE-------DGLPTNLHSLDIRGNMEIWKSMIEWGQGFHRFS 244 (355)
Q Consensus 172 ~~~L~~L~l~~~~~~~~~p~~l~~~~~L~~L~l~~~~i~~-------~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~l~ 244 (355)
+++|+.|++++|......|..++.+++|++|+++.+.+.. ...+++|+.|++++|......+.. . +..++
T Consensus 352 l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~~~l~~L~~L~l~~N~l~~~~~~~-~--~~~l~ 428 (562)
T 3a79_B 352 PSSFTFLNFTQNVFTDSVFQGCSTLKRLQTLILQRNGLKNFFKVALMTKNMSSLETLDVSLNSLNSHAYDR-T--CAWAE 428 (562)
T ss_dssp CCCCCEEECCSSCCCTTTTTTCCSCSSCCEEECCSSCCCBTTHHHHTTTTCTTCCEEECTTSCCBSCCSSC-C--CCCCT
T ss_pred CCCceEEECCCCccccchhhhhcccCCCCEEECCCCCcCCcccchhhhcCCCCCCEEECCCCcCCCccChh-h--hcCcc
Confidence 3444555555443333344445555555555555322221 223445555555555432212211 1 44455
Q ss_pred ccceeEecccCCcccccCccccccCCCCCCCCccceEEeccCCCcccccccCCCCCCccEEeeCCCCCCcccCCCCC--C
Q 018478 245 SLRELRIEGCDDDMVSFPPEDIRMGTTLPLPTSLTSLAIFSFPNLERLSSSIVDLQNLTSLYLVGCPKLKYFPEKGL--P 322 (355)
Q Consensus 245 ~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~l~~~~~~~~~L~~L~l~~~~~l~~~~~~~~--~ 322 (355)
+|++|++++ |.-...++. ..+++|+.|++++ +.++.+|..+..+++|++|++++| +++.+|...+ +
T Consensus 429 ~L~~L~l~~-n~l~~~~~~---------~l~~~L~~L~L~~-N~l~~ip~~~~~l~~L~~L~L~~N-~l~~l~~~~~~~l 496 (562)
T 3a79_B 429 SILVLNLSS-NMLTGSVFR---------CLPPKVKVLDLHN-NRIMSIPKDVTHLQALQELNVASN-QLKSVPDGVFDRL 496 (562)
T ss_dssp TCCEEECCS-SCCCGGGGS---------SCCTTCSEEECCS-SCCCCCCTTTTSSCCCSEEECCSS-CCCCCCTTSTTTC
T ss_pred cCCEEECCC-CCCCcchhh---------hhcCcCCEEECCC-CcCcccChhhcCCCCCCEEECCCC-CCCCCCHHHHhcC
Confidence 555555555 221122221 1226899999998 588899988889999999999998 8999987533 7
Q ss_pred CCccEEEecCCch
Q 018478 323 SSLLELWIGGCPL 335 (355)
Q Consensus 323 ~~L~~L~l~~c~~ 335 (355)
++|++|++.+++.
T Consensus 497 ~~L~~L~l~~N~~ 509 (562)
T 3a79_B 497 TSLQYIWLHDNPW 509 (562)
T ss_dssp TTCCCEECCSCCB
T ss_pred CCCCEEEecCCCc
Confidence 8999999998763
No 15
>3t6q_A CD180 antigen; protein-protein complex, leucine rich repeat, MD-2 related L recognition, receptor, innate immunity, glycosylation, IMMU; HET: NAG BMA MAN; 1.90A {Mus musculus} PDB: 3b2d_A* 3rg1_A*
Probab=99.90 E-value=8.1e-23 Score=199.08 Aligned_cols=290 Identities=17% Similarity=0.173 Sum_probs=213.4
Q ss_pred CccEEeecccccCcccccCccC--CCcceEecccCccccccccccCcCCCCCCCccccccccccEEEecCCCccchhccc
Q 018478 7 SLEILEIWSCRSLTYLAAVQLP--RSLKRLDIQCCSNIRTLTMEEGIQSSSSSSSRRYTSYLLEELCISSCRSLTSIFSK 84 (355)
Q Consensus 7 ~L~~L~l~~~~~l~~l~~~~~~--~~L~~L~l~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~~~~~ 84 (355)
+|++|+++++ .++.++...+. ++|++|+++++ .+..+|..+ ..+++|++|+++++. ++.+
T Consensus 255 ~L~~L~l~~n-~l~~~~~~~~~~l~~L~~L~l~~n-~l~~lp~~l------------~~l~~L~~L~l~~n~-l~~~--- 316 (606)
T 3t6q_A 255 SVESINLQKH-YFFNISSNTFHCFSGLQELDLTAT-HLSELPSGL------------VGLSTLKKLVLSANK-FENL--- 316 (606)
T ss_dssp EEEEEECTTC-CCSSCCTTTTTTCTTCSEEECTTS-CCSCCCSSC------------CSCTTCCEEECTTCC-CSBG---
T ss_pred ceeEEEeecC-ccCccCHHHhccccCCCEEeccCC-ccCCCChhh------------cccccCCEEECccCC-cCcC---
Confidence 6888888864 56777665554 88999999985 577777653 458899999998864 3332
Q ss_pred cccchhccccc-cCCCCCcccEEEEccCcchhchhh-hccCCCCCcEEEeeccCCcCcc--cccccCCCCCceEeccccC
Q 018478 85 NELSATLESLE-VGNLPPSLKSLRVQGCSKLESIAE-TLDNSTSLETIHIFYCENMKIL--PSGLHNLRQLQEISIEGCG 160 (355)
Q Consensus 85 n~~~~~~~~~~-~~~~~~~L~~L~l~~~~~~~~~~~-~~~~l~~L~~L~l~~~~~~~~~--~~~~~~l~~L~~L~l~~~~ 160 (355)
. + ....+++|+.|++++|.....++. .+..+++|++|++++|...... +..+..+++|+.|++++|.
T Consensus 317 ------~---~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~~l~~L~~L~l~~n~ 387 (606)
T 3t6q_A 317 ------C---QISASNFPSLTHLSIKGNTKRLELGTGCLENLENLRELDLSHDDIETSDCCNLQLRNLSHLQSLNLSYNE 387 (606)
T ss_dssp ------G---GGCGGGCTTCSEEECCSCSSCCBCCSSTTTTCTTCCEEECCSSCCCEEEESTTTTTTCTTCCEEECCSCS
T ss_pred ------c---hhhhhccCcCCEEECCCCCcccccchhhhhccCcCCEEECCCCccccccCcchhcccCCCCCEEECCCCc
Confidence 0 2 124457999999999874445554 4788999999999998843332 5678889999999999985
Q ss_pred CCcCCCCCCCCCCCcceEEEccccCcCcccc-cccCCCCCceEEEeecCcCC-----CCCCCCccEEEecCCcchhhhhh
Q 018478 161 NLESFPEGGLPCAKLKEVVIRWCGRLEALPK-GLHNLKSLQKLTIGKGGLEE-----DGLPTNLHSLDIRGNMEIWKSMI 234 (355)
Q Consensus 161 ~l~~~~~~~~~~~~L~~L~l~~~~~~~~~p~-~l~~~~~L~~L~l~~~~i~~-----~~~~~~L~~L~l~~~~~~~~~~~ 234 (355)
.....|..+..+++|+.|++++|......+. .+..+++|++|+++.+.+.. ...+++|+.|++++|........
T Consensus 388 l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~ 467 (606)
T 3t6q_A 388 PLSLKTEAFKECPQLELLDLAFTRLKVKDAQSPFQNLHLLKVLNLSHSLLDISSEQLFDGLPALQHLNLQGNHFPKGNIQ 467 (606)
T ss_dssp CEEECTTTTTTCTTCSEEECTTCCEECCTTCCTTTTCTTCCEEECTTCCCBTTCTTTTTTCTTCCEEECTTCBCGGGEEC
T ss_pred CCcCCHHHhcCCccCCeEECCCCcCCCcccchhhhCcccCCEEECCCCccCCcCHHHHhCCCCCCEEECCCCCCCccccc
Confidence 4444567788899999999999765444443 48899999999998444332 34578999999999975442211
Q ss_pred hhcccCCCCCccceeEecccCCcccccCccccccCCCCCCCCccceEEeccCCCcc-cccccCCCCCCccEEeeCCCCCC
Q 018478 235 EWGQGFHRFSSLRELRIEGCDDDMVSFPPEDIRMGTTLPLPTSLTSLAIFSFPNLE-RLSSSIVDLQNLTSLYLVGCPKL 313 (355)
Q Consensus 235 ~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~l~-~l~~~~~~~~~L~~L~l~~~~~l 313 (355)
. ...+..+++|++|++++ +.+..+++..+ ..+++|++|+++++ .++ ..|..+..+++| +|++++| ++
T Consensus 468 ~-~~~~~~l~~L~~L~Ls~--n~l~~~~~~~~------~~l~~L~~L~Ls~N-~l~~~~~~~l~~l~~L-~L~L~~N-~l 535 (606)
T 3t6q_A 468 K-TNSLQTLGRLEILVLSF--CDLSSIDQHAF------TSLKMMNHVDLSHN-RLTSSSIEALSHLKGI-YLNLASN-HI 535 (606)
T ss_dssp S-SCGGGGCTTCCEEECTT--SCCCEECTTTT------TTCTTCCEEECCSS-CCCGGGGGGGTTCCSC-EEECCSS-CC
T ss_pred c-chhhccCCCccEEECCC--CccCccChhhh------ccccCCCEEECCCC-ccCcCChhHhCccccc-EEECcCC-cc
Confidence 1 11267889999999998 45555543322 56789999999995 555 456678899999 9999999 78
Q ss_pred cccCCCCC--CCCccEEEecCCch
Q 018478 314 KYFPEKGL--PSSLLELWIGGCPL 335 (355)
Q Consensus 314 ~~~~~~~~--~~~L~~L~l~~c~~ 335 (355)
+.++...+ +++|++|++.+||.
T Consensus 536 ~~~~~~~~~~l~~L~~L~l~~N~~ 559 (606)
T 3t6q_A 536 SIILPSLLPILSQQRTINLRQNPL 559 (606)
T ss_dssp CCCCGGGHHHHHTSSEEECTTCCE
T ss_pred cccCHhhcccCCCCCEEeCCCCCc
Confidence 88876544 68999999999874
No 16
>3v47_A TOLL-like receptor 5B and variable lymphocyte REC chimeric protein; innate immunity, leucine-rich repeat, innate immune receptor system; HET: NAG; 2.47A {Danio rerio} PDB: 3v44_A*
Probab=99.90 E-value=4.7e-22 Score=186.96 Aligned_cols=281 Identities=16% Similarity=0.160 Sum_probs=191.5
Q ss_pred EEeecccccCcccccCccCCCcceEecccCccccccccccCcCCCCCCCccccccccccEEEecCCCccchhccccccch
Q 018478 10 ILEIWSCRSLTYLAAVQLPRSLKRLDIQCCSNIRTLTMEEGIQSSSSSSSRRYTSYLLEELCISSCRSLTSIFSKNELSA 89 (355)
Q Consensus 10 ~L~l~~~~~l~~l~~~~~~~~L~~L~l~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~~~~~n~~~~ 89 (355)
.++..+ .+++.+|. ++++|++|+++++ .++.++... +..+++|++|+++++.....+
T Consensus 14 ~~~c~~-~~l~~lp~--l~~~l~~L~Ls~n-~i~~~~~~~-----------~~~l~~L~~L~L~~n~~~~~i-------- 70 (455)
T 3v47_A 14 NAICIN-RGLHQVPE--LPAHVNYVDLSLN-SIAELNETS-----------FSRLQDLQFLKVEQQTPGLVI-------- 70 (455)
T ss_dssp EEECCS-SCCSSCCC--CCTTCCEEECCSS-CCCEECTTT-----------TSSCTTCCEEECCCCSTTCEE--------
T ss_pred ccCcCC-CCcccCCC--CCCccCEEEecCC-ccCcCChhH-----------hccCccccEEECcCCcccceE--------
Confidence 455553 46778875 7799999999994 577664432 566999999999987543233
Q ss_pred hcccccc--CCCCCcccEEEEccCcchhc-hhhhccCCCCCcEEEeeccCCcCccccc--ccCCCCCceEeccccCCCcC
Q 018478 90 TLESLEV--GNLPPSLKSLRVQGCSKLES-IAETLDNSTSLETIHIFYCENMKILPSG--LHNLRQLQEISIEGCGNLES 164 (355)
Q Consensus 90 ~~~~~~~--~~~~~~L~~L~l~~~~~~~~-~~~~~~~l~~L~~L~l~~~~~~~~~~~~--~~~l~~L~~L~l~~~~~l~~ 164 (355)
+. ...+++|++|++++|. +.. .|..++.+++|++|++++|......+.. +..+++|+.|++++| .+..
T Consensus 71 -----~~~~~~~l~~L~~L~Ls~n~-l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~l~~L~~L~L~~n-~l~~ 143 (455)
T 3v47_A 71 -----RNNTFRGLSSLIILKLDYNQ-FLQLETGAFNGLANLEVLTLTQCNLDGAVLSGNFFKPLTSLEMLVLRDN-NIKK 143 (455)
T ss_dssp -----CTTTTTTCTTCCEEECTTCT-TCEECTTTTTTCTTCCEEECTTSCCBTHHHHSSTTTTCTTCCEEECCSS-BCCS
T ss_pred -----CcccccccccCCEEeCCCCc-cCccChhhccCcccCCEEeCCCCCCCccccCcccccCcccCCEEECCCC-ccCc
Confidence 22 2445899999999998 554 4778999999999999999844444443 888999999999998 4555
Q ss_pred C-CCC-CCCCCCcceEEEccccCcCcccccccCC----------------------------------CCCceEEEeecC
Q 018478 165 F-PEG-GLPCAKLKEVVIRWCGRLEALPKGLHNL----------------------------------KSLQKLTIGKGG 208 (355)
Q Consensus 165 ~-~~~-~~~~~~L~~L~l~~~~~~~~~p~~l~~~----------------------------------~~L~~L~l~~~~ 208 (355)
. |.. +..+++|++|++++|......+..+..+ ++|++|+++.+.
T Consensus 144 ~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~l~~l~~~~L~~L~l~~n~l~~~~~~~~~~~~~~~~~~~~~L~~L~Ls~n~ 223 (455)
T 3v47_A 144 IQPASFFLNMRRFHVLDLTFNKVKSICEEDLLNFQGKHFTLLRLSSITLQDMNEYWLGWEKCGNPFKNTSITTLDLSGNG 223 (455)
T ss_dssp CCCCGGGGGCTTCCEEECTTCCBSCCCTTTSGGGTTCEEEEEECTTCBCTTCSTTCTTHHHHCCTTTTCEEEEEECTTSC
T ss_pred cCcccccCCCCcccEEeCCCCcccccChhhhhccccccccccccccCcccccchhhccccccccccccceeeeEecCCCc
Confidence 5 544 6779999999999976544445555443 345555544221
Q ss_pred cCC-------------------------------------C-------CCCCCccEEEecCCcchhhhhhhhcccCCCCC
Q 018478 209 LEE-------------------------------------D-------GLPTNLHSLDIRGNMEIWKSMIEWGQGFHRFS 244 (355)
Q Consensus 209 i~~-------------------------------------~-------~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~l~ 244 (355)
+.. . ...++|+.|++++|......+. .+..++
T Consensus 224 l~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~----~~~~l~ 299 (455)
T 3v47_A 224 FKESMAKRFFDAIAGTKIQSLILSNSYNMGSSFGHTNFKDPDNFTFKGLEASGVKTCDLSKSKIFALLKS----VFSHFT 299 (455)
T ss_dssp CCHHHHHHHHHHTTTCCEEEEECTTCTTTSCCTTCCSSCCCCTTTTGGGTTSCCCEEECCSSCCCEECTT----TTTTCT
T ss_pred ccccchhhhhccccccceeeEeeccccccccccchhhhccCcccccccccccCceEEEecCccccccchh----hcccCC
Confidence 110 0 0013455555555543322111 156778
Q ss_pred ccceeEecccCCcccccCccccccCCCCCCCCccceEEeccCCCcccc-cccCCCCCCccEEeeCCCCCCcccCCCCC--
Q 018478 245 SLRELRIEGCDDDMVSFPPEDIRMGTTLPLPTSLTSLAIFSFPNLERL-SSSIVDLQNLTSLYLVGCPKLKYFPEKGL-- 321 (355)
Q Consensus 245 ~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~l-~~~~~~~~~L~~L~l~~~~~l~~~~~~~~-- 321 (355)
+|++|++++ +.+..++...+ ..+++|++|++++ +.++.+ +..+..+++|++|++++| +++.++...+
T Consensus 300 ~L~~L~Ls~--n~l~~~~~~~~------~~l~~L~~L~Ls~-N~l~~~~~~~~~~l~~L~~L~Ls~N-~l~~~~~~~~~~ 369 (455)
T 3v47_A 300 DLEQLTLAQ--NEINKIDDNAF------WGLTHLLKLNLSQ-NFLGSIDSRMFENLDKLEVLDLSYN-HIRALGDQSFLG 369 (455)
T ss_dssp TCCEEECTT--SCCCEECTTTT------TTCTTCCEEECCS-SCCCEECGGGGTTCTTCCEEECCSS-CCCEECTTTTTT
T ss_pred CCCEEECCC--CcccccChhHh------cCcccCCEEECCC-CccCCcChhHhcCcccCCEEECCCC-cccccChhhccc
Confidence 888888887 45555543221 4667899999998 466655 456788899999999988 7888755444
Q ss_pred CCCccEEEecCCc
Q 018478 322 PSSLLELWIGGCP 334 (355)
Q Consensus 322 ~~~L~~L~l~~c~ 334 (355)
+++|++|++++|.
T Consensus 370 l~~L~~L~L~~N~ 382 (455)
T 3v47_A 370 LPNLKELALDTNQ 382 (455)
T ss_dssp CTTCCEEECCSSC
T ss_pred cccccEEECCCCc
Confidence 6899999998874
No 17
>2z81_A CD282 antigen, TOLL-like receptor 2, variable lymphocyte recepto; TLR2, PAM3CSK4, lipopeptide, innate immunity, cytoplasmic VE glycoprotein; HET: NAG BMA MAN PCJ; 1.80A {Mus musculus} PDB: 2z82_A* 3a7c_A* 3a79_A* 3a7b_A* 2z7x_A*
Probab=99.89 E-value=1.7e-22 Score=194.49 Aligned_cols=66 Identities=21% Similarity=0.199 Sum_probs=33.3
Q ss_pred CCCCCceEEEeecCcCC--------CCCCCCccEEEecCCcchhhhhhhhcccCCCCCccceeEecccCCcccccCcc
Q 018478 195 NLKSLQKLTIGKGGLEE--------DGLPTNLHSLDIRGNMEIWKSMIEWGQGFHRFSSLRELRIEGCDDDMVSFPPE 264 (355)
Q Consensus 195 ~~~~L~~L~l~~~~i~~--------~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~ 264 (355)
.+++|++|+++.+.+.. .+.+++|+.|++++|........... +..+++|++|++++ +.++.+|..
T Consensus 332 ~l~~L~~L~Ls~N~l~~~~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~--~~~l~~L~~L~Ls~--N~l~~lp~~ 405 (549)
T 2z81_A 332 HLKSLEFLDLSENLMVEEYLKNSACKGAWPSLQTLVLSQNHLRSMQKTGEI--LLTLKNLTSLDISR--NTFHPMPDS 405 (549)
T ss_dssp HCTTCCEEECCSSCCCHHHHHHHTCTTSSTTCCEEECTTSCCCCHHHHHHH--GGGCTTCCEEECTT--CCCCCCCSC
T ss_pred cCccccEEEccCCccccccccchhhhhccccCcEEEccCCcccccccchhh--hhcCCCCCEEECCC--CCCccCChh
Confidence 45666666666333321 23456666666666653221110011 45566666666666 344555543
No 18
>1o6v_A Internalin A; bacterial infection, extracellular recognition, cell WALL attached, leucine rich repeat; 1.5A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 1o6s_A* 1o6t_A 2omz_A 2omy_A 2omw_A 2omv_A 2omt_A 2omx_A 2omu_A
Probab=99.89 E-value=6.6e-22 Score=186.61 Aligned_cols=286 Identities=16% Similarity=0.177 Sum_probs=134.4
Q ss_pred CCCccEEeecccccCcccccCccCCCcceEecccCccccccccccCcCCCCC----------CCccccccccccEEEecC
Q 018478 5 NSSLEILEIWSCRSLTYLAAVQLPRSLKRLDIQCCSNIRTLTMEEGIQSSSS----------SSSRRYTSYLLEELCISS 74 (355)
Q Consensus 5 ~~~L~~L~l~~~~~l~~l~~~~~~~~L~~L~l~~~~~l~~~~~~~~~~~~~~----------~~~~~~~~~~L~~L~l~~ 74 (355)
+++++.|++.++ .++.++.....++|++|+++++ .++.++...+++++.. .+. +..+++|++|++++
T Consensus 45 l~~l~~L~l~~~-~i~~l~~~~~l~~L~~L~Ls~n-~l~~~~~~~~l~~L~~L~l~~n~l~~~~~-~~~l~~L~~L~L~~ 121 (466)
T 1o6v_A 45 LDQVTTLQADRL-GIKSIDGVEYLNNLTQINFSNN-QLTDITPLKNLTKLVDILMNNNQIADITP-LANLTNLTGLTLFN 121 (466)
T ss_dssp HHTCCEEECCSS-CCCCCTTGGGCTTCCEEECCSS-CCCCCGGGTTCTTCCEEECCSSCCCCCGG-GTTCTTCCEEECCS
T ss_pred hccccEEecCCC-CCccCcchhhhcCCCEEECCCC-ccCCchhhhccccCCEEECCCCccccChh-hcCCCCCCEEECCC
Confidence 456777777654 4555554344477777777774 3555544211111100 000 23355555555554
Q ss_pred CCccchhccccccchhccccccCCCCCcccEEEEccCcchhchhhhccCCCCCcEEEeeccCCcCcccccccCCCCCceE
Q 018478 75 CRSLTSIFSKNELSATLESLEVGNLPPSLKSLRVQGCSKLESIAETLDNSTSLETIHIFYCENMKILPSGLHNLRQLQEI 154 (355)
Q Consensus 75 ~~~l~~~~~~n~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L 154 (355)
+ .++.+ +....+++|+.|++++|. +..++. +..+++|++|.+.+ . +..++ .+.++++|+.|
T Consensus 122 n-~l~~~-------------~~~~~l~~L~~L~l~~n~-l~~~~~-~~~l~~L~~L~l~~-~-~~~~~-~~~~l~~L~~L 182 (466)
T 1o6v_A 122 N-QITDI-------------DPLKNLTNLNRLELSSNT-ISDISA-LSGLTSLQQLSFGN-Q-VTDLK-PLANLTTLERL 182 (466)
T ss_dssp S-CCCCC-------------GGGTTCTTCSEEEEEEEE-ECCCGG-GTTCTTCSEEEEEE-S-CCCCG-GGTTCTTCCEE
T ss_pred C-CCCCC-------------hHHcCCCCCCEEECCCCc-cCCChh-hccCCcccEeecCC-c-ccCch-hhccCCCCCEE
Confidence 3 23333 323444677777777765 444432 44445555544432 1 12221 24445555555
Q ss_pred eccccCCCcCCCCCCCCCCCcceEEEccccC---------------------cCcccccccCCCCCceEEEeecCc---C
Q 018478 155 SIEGCGNLESFPEGGLPCAKLKEVVIRWCGR---------------------LEALPKGLHNLKSLQKLTIGKGGL---E 210 (355)
Q Consensus 155 ~l~~~~~l~~~~~~~~~~~~L~~L~l~~~~~---------------------~~~~p~~l~~~~~L~~L~l~~~~i---~ 210 (355)
++++| .+..++ .+..+++|+.|++++|.. ++.+ ..+..+++|++|+++.+.+ +
T Consensus 183 ~l~~n-~l~~~~-~l~~l~~L~~L~l~~n~l~~~~~~~~l~~L~~L~l~~n~l~~~-~~l~~l~~L~~L~l~~n~l~~~~ 259 (466)
T 1o6v_A 183 DISSN-KVSDIS-VLAKLTNLESLIATNNQISDITPLGILTNLDELSLNGNQLKDI-GTLASLTNLTDLDLANNQISNLA 259 (466)
T ss_dssp ECCSS-CCCCCG-GGGGCTTCSEEECCSSCCCCCGGGGGCTTCCEEECCSSCCCCC-GGGGGCTTCSEEECCSSCCCCCG
T ss_pred ECcCC-cCCCCh-hhccCCCCCEEEecCCcccccccccccCCCCEEECCCCCcccc-hhhhcCCCCCEEECCCCccccch
Confidence 55554 233322 133344555555544322 2222 1233344444444442111 1
Q ss_pred CCCCCCCccEEEecCCcchhhhhhhhcccCCCCCccceeEecccCCcccccCccccccCCCCCCCCccceEEeccCCCcc
Q 018478 211 EDGLPTNLHSLDIRGNMEIWKSMIEWGQGFHRFSSLRELRIEGCDDDMVSFPPEDIRMGTTLPLPTSLTSLAIFSFPNLE 290 (355)
Q Consensus 211 ~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~l~ 290 (355)
....+++|+.|++++|.... .+. +..+++|++|++++ +.+..++. . ..+++|++|++++| .++
T Consensus 260 ~~~~l~~L~~L~l~~n~l~~-~~~-----~~~l~~L~~L~L~~--n~l~~~~~-~-------~~l~~L~~L~L~~n-~l~ 322 (466)
T 1o6v_A 260 PLSGLTKLTELKLGANQISN-ISP-----LAGLTALTNLELNE--NQLEDISP-I-------SNLKNLTYLTLYFN-NIS 322 (466)
T ss_dssp GGTTCTTCSEEECCSSCCCC-CGG-----GTTCTTCSEEECCS--SCCSCCGG-G-------GGCTTCSEEECCSS-CCS
T ss_pred hhhcCCCCCEEECCCCccCc-ccc-----ccCCCccCeEEcCC--CcccCchh-h-------cCCCCCCEEECcCC-cCC
Confidence 12233444444444443221 111 34455555555555 23333332 1 24456666666663 444
Q ss_pred cccccCCCCCCccEEeeCCCCCCcccCCCCCCCCccEEEecCCc
Q 018478 291 RLSSSIVDLQNLTSLYLVGCPKLKYFPEKGLPSSLLELWIGGCP 334 (355)
Q Consensus 291 ~l~~~~~~~~~L~~L~l~~~~~l~~~~~~~~~~~L~~L~l~~c~ 334 (355)
.++. +..+++|++|++++| +++.++.-..+++|++|++++|.
T Consensus 323 ~~~~-~~~l~~L~~L~l~~n-~l~~~~~l~~l~~L~~L~l~~n~ 364 (466)
T 1o6v_A 323 DISP-VSSLTKLQRLFFYNN-KVSDVSSLANLTNINWLSAGHNQ 364 (466)
T ss_dssp CCGG-GGGCTTCCEEECCSS-CCCCCGGGTTCTTCCEEECCSSC
T ss_pred Cchh-hccCccCCEeECCCC-ccCCchhhccCCCCCEEeCCCCc
Confidence 4433 456667777777766 56665443346777777777664
No 19
>2z81_A CD282 antigen, TOLL-like receptor 2, variable lymphocyte recepto; TLR2, PAM3CSK4, lipopeptide, innate immunity, cytoplasmic VE glycoprotein; HET: NAG BMA MAN PCJ; 1.80A {Mus musculus} PDB: 2z82_A* 3a7c_A* 3a79_A* 3a7b_A* 2z7x_A*
Probab=99.89 E-value=5.2e-22 Score=191.09 Aligned_cols=106 Identities=18% Similarity=0.144 Sum_probs=65.6
Q ss_pred CCCccEEEecCCcchhhhhhhhcccCCCCCccceeEecccCCcccccCc---cccccCCCCCCCCccceEEeccCCCccc
Q 018478 215 PTNLHSLDIRGNMEIWKSMIEWGQGFHRFSSLRELRIEGCDDDMVSFPP---EDIRMGTTLPLPTSLTSLAIFSFPNLER 291 (355)
Q Consensus 215 ~~~L~~L~l~~~~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~---~~~~~~~~~~~~~~L~~L~l~~~~~l~~ 291 (355)
+++|+.|++++|......+... ..+..+++|++|++++ +.++.++. .+ ..+++|++|++++ +.++.
T Consensus 333 l~~L~~L~Ls~N~l~~~~~~~~-~~~~~l~~L~~L~Ls~--N~l~~~~~~~~~~-------~~l~~L~~L~Ls~-N~l~~ 401 (549)
T 2z81_A 333 LKSLEFLDLSENLMVEEYLKNS-ACKGAWPSLQTLVLSQ--NHLRSMQKTGEIL-------LTLKNLTSLDISR-NTFHP 401 (549)
T ss_dssp CTTCCEEECCSSCCCHHHHHHH-TCTTSSTTCCEEECTT--SCCCCHHHHHHHG-------GGCTTCCEEECTT-CCCCC
T ss_pred CccccEEEccCCccccccccch-hhhhccccCcEEEccC--Ccccccccchhhh-------hcCCCCCEEECCC-CCCcc
Confidence 4566677777666443332210 1145677788888877 45554432 12 4567888888888 57778
Q ss_pred ccccCCCCCCccEEeeCCCCCCcccCCCCCCCCccEEEecCC
Q 018478 292 LSSSIVDLQNLTSLYLVGCPKLKYFPEKGLPSSLLELWIGGC 333 (355)
Q Consensus 292 l~~~~~~~~~L~~L~l~~~~~l~~~~~~~~~~~L~~L~l~~c 333 (355)
+|..+..+++|++|++++| +++.++.. ++++|++|++++|
T Consensus 402 lp~~~~~~~~L~~L~Ls~N-~l~~l~~~-~~~~L~~L~Ls~N 441 (549)
T 2z81_A 402 MPDSCQWPEKMRFLNLSST-GIRVVKTC-IPQTLEVLDVSNN 441 (549)
T ss_dssp CCSCCCCCTTCCEEECTTS-CCSCCCTT-SCTTCSEEECCSS
T ss_pred CChhhcccccccEEECCCC-Ccccccch-hcCCceEEECCCC
Confidence 8877777888888888887 57666542 2344555554443
No 20
>3oja_B Anopheles plasmodium-responsive leucine-rich REPE 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae}
Probab=99.89 E-value=2.1e-22 Score=195.74 Aligned_cols=282 Identities=15% Similarity=0.116 Sum_probs=176.9
Q ss_pred CCCccEEeecccccCcccccCccC--CCcceEecccCccccccccccCcCCCCCCCccccccccccEEEecCCCccchhc
Q 018478 5 NSSLEILEIWSCRSLTYLAAVQLP--RSLKRLDIQCCSNIRTLTMEEGIQSSSSSSSRRYTSYLLEELCISSCRSLTSIF 82 (355)
Q Consensus 5 ~~~L~~L~l~~~~~l~~l~~~~~~--~~L~~L~l~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~~~ 82 (355)
+++++.+++.++ .+..+|...+. ++|++|+++++ .+..++... +..+++|++|+++++. ++.+
T Consensus 50 l~~l~~l~l~~~-~l~~lp~~~~~~l~~L~~L~L~~n-~l~~~~~~~-----------~~~l~~L~~L~L~~n~-l~~~- 114 (597)
T 3oja_B 50 LNNQKIVTFKNS-TMRKLPAALLDSFRQVELLNLNDL-QIEEIDTYA-----------FAYAHTIQKLYMGFNA-IRYL- 114 (597)
T ss_dssp GCCCSEEEESSC-EESEECTHHHHHCCCCSEEECTTS-CCCEECTTT-----------TTTCTTCCEEECCSSC-CCCC-
T ss_pred CCCceEEEeeCC-CCCCcCHHHHccCCCCcEEECCCC-CCCCCChHH-----------hcCCCCCCEEECCCCc-CCCC-
Confidence 356677777653 45555544333 67777777774 455555432 4557777777777653 3333
Q ss_pred cccccchhccccccC--CCCCcccEEEEccCcchhchhhh-ccCCCCCcEEEeeccCCcCcccccccCCCCCceEecccc
Q 018478 83 SKNELSATLESLEVG--NLPPSLKSLRVQGCSKLESIAET-LDNSTSLETIHIFYCENMKILPSGLHNLRQLQEISIEGC 159 (355)
Q Consensus 83 ~~n~~~~~~~~~~~~--~~~~~L~~L~l~~~~~~~~~~~~-~~~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~ 159 (355)
+.. ..+++|+.|++++|. +..+|+. ++.+++|++|++++|......|..++.+++|+.|++++|
T Consensus 115 ------------~~~~~~~l~~L~~L~L~~n~-l~~l~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~N 181 (597)
T 3oja_B 115 ------------PPHVFQNVPLLTVLVLERND-LSSLPRGIFHNTPKLTTLSMSNNNLERIEDDTFQATTSLQNLQLSSN 181 (597)
T ss_dssp ------------CTTTTTTCTTCCEEECCSSC-CCCCCTTTTTTCTTCCEEECCSSCCCBCCTTTTTTCTTCCEEECTTS
T ss_pred ------------CHHHHcCCCCCCEEEeeCCC-CCCCCHHHhccCCCCCEEEeeCCcCCCCChhhhhcCCcCcEEECcCC
Confidence 221 344677777777765 5555544 466777777777776633333445666777777777765
Q ss_pred CCCcCCCCCCCCCCCcceEEEcccc------------------CcCcccccccCCCCCceEEEeecCcC---CCCCCCCc
Q 018478 160 GNLESFPEGGLPCAKLKEVVIRWCG------------------RLEALPKGLHNLKSLQKLTIGKGGLE---EDGLPTNL 218 (355)
Q Consensus 160 ~~l~~~~~~~~~~~~L~~L~l~~~~------------------~~~~~p~~l~~~~~L~~L~l~~~~i~---~~~~~~~L 218 (355)
.+..++ +..+++|+.|++++|. .+..++..+ .++|+.|+++.+.+. ....+++|
T Consensus 182 -~l~~~~--~~~l~~L~~L~l~~n~l~~l~~~~~L~~L~ls~n~l~~~~~~~--~~~L~~L~L~~n~l~~~~~l~~l~~L 256 (597)
T 3oja_B 182 -RLTHVD--LSLIPSLFHANVSYNLLSTLAIPIAVEELDASHNSINVVRGPV--NVELTILKLQHNNLTDTAWLLNYPGL 256 (597)
T ss_dssp -CCSBCC--GGGCTTCSEEECCSSCCSEEECCTTCSEEECCSSCCCEEECSC--CSCCCEEECCSSCCCCCGGGGGCTTC
T ss_pred -CCCCcC--hhhhhhhhhhhcccCccccccCCchhheeeccCCccccccccc--CCCCCEEECCCCCCCCChhhccCCCC
Confidence 344333 2223344444444431 122222221 246777777633333 23456788
Q ss_pred cEEEecCCcchhhhhhhhcccCCCCCccceeEecccCCcccccCccccccCCCCCCCCccceEEeccCCCcccccccCCC
Q 018478 219 HSLDIRGNMEIWKSMIEWGQGFHRFSSLRELRIEGCDDDMVSFPPEDIRMGTTLPLPTSLTSLAIFSFPNLERLSSSIVD 298 (355)
Q Consensus 219 ~~L~l~~~~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~l~~~~~~ 298 (355)
+.|++++|......+. . +..+++|+.|++++ +.+..++... ..+++|+.|++++ +.+..+|..+..
T Consensus 257 ~~L~Ls~N~l~~~~~~--~--~~~l~~L~~L~Ls~--N~l~~l~~~~-------~~l~~L~~L~Ls~-N~l~~i~~~~~~ 322 (597)
T 3oja_B 257 VEVDLSYNELEKIMYH--P--FVKMQRLERLYISN--NRLVALNLYG-------QPIPTLKVLDLSH-NHLLHVERNQPQ 322 (597)
T ss_dssp SEEECCSSCCCEEESG--G--GTTCSSCCEEECTT--SCCCEEECSS-------SCCTTCCEEECCS-SCCCCCGGGHHH
T ss_pred CEEECCCCccCCCCHH--H--hcCccCCCEEECCC--CCCCCCCccc-------ccCCCCcEEECCC-CCCCccCccccc
Confidence 8888888764433222 1 67888899999988 5666666544 4577899999998 577788887888
Q ss_pred CCCccEEeeCCCCCCcccCCCCCCCCccEEEecCCch
Q 018478 299 LQNLTSLYLVGCPKLKYFPEKGLPSSLLELWIGGCPL 335 (355)
Q Consensus 299 ~~~L~~L~l~~~~~l~~~~~~~~~~~L~~L~l~~c~~ 335 (355)
+++|++|++++| +++.++. ..+++|++|++.+++.
T Consensus 323 l~~L~~L~L~~N-~l~~~~~-~~~~~L~~L~l~~N~~ 357 (597)
T 3oja_B 323 FDRLENLYLDHN-SIVTLKL-STHHTLKNLTLSHNDW 357 (597)
T ss_dssp HTTCSEEECCSS-CCCCCCC-CTTCCCSEEECCSSCE
T ss_pred CCCCCEEECCCC-CCCCcCh-hhcCCCCEEEeeCCCC
Confidence 899999999998 6887764 3468999999999874
No 21
>1ziw_A TOLL-like receptor 3; innate immunity, immune system; HET: NDG NAG; 2.10A {Homo sapiens} PDB: 2a0z_A* 3cig_A* 3ciy_A*
Probab=99.88 E-value=1.7e-21 Score=192.29 Aligned_cols=314 Identities=17% Similarity=0.102 Sum_probs=212.0
Q ss_pred CCCCCccEEeecccccCcccccCccC--CCcceEecccCcccc-----cccc---cc--CcCCCC-----------CCCc
Q 018478 3 DTNSSLEILEIWSCRSLTYLAAVQLP--RSLKRLDIQCCSNIR-----TLTM---EE--GIQSSS-----------SSSS 59 (355)
Q Consensus 3 ~~~~~L~~L~l~~~~~l~~l~~~~~~--~~L~~L~l~~~~~l~-----~~~~---~~--~~~~~~-----------~~~~ 59 (355)
+.+++|++|+++++ .++.+.+..+. ++|++|+++++..-. .+|. .. .++++. ..+.
T Consensus 269 ~~l~~L~~L~L~~n-~l~~~~~~~~~~l~~L~~L~L~~~~~~~~~~~~~lp~i~~~~~~~l~~L~~L~l~~n~l~~~~~~ 347 (680)
T 1ziw_A 269 AWLPQLEYFFLEYN-NIQHLFSHSLHGLFNVRYLNLKRSFTKQSISLASLPKIDDFSFQWLKCLEHLNMEDNDIPGIKSN 347 (680)
T ss_dssp TTCTTCCEEECCSC-CBSEECTTTTTTCTTCCEEECTTCBCCC------CCEECTTTTTTCTTCCEEECCSCCBCCCCTT
T ss_pred cCcccccEeeCCCC-ccCccChhhhcCCCCccEEeccchhhhcccccccccccChhhcccCCCCCEEECCCCccCCCChh
Confidence 45788999999865 45555444443 788888887642111 1221 00 000000 0122
Q ss_pred cccccccccEEEecCCCc-cchhccccccchhccccccCC----CCCcccEEEEccCcchhchhhhccCCCCCcEEEeec
Q 018478 60 RRYTSYLLEELCISSCRS-LTSIFSKNELSATLESLEVGN----LPPSLKSLRVQGCSKLESIAETLDNSTSLETIHIFY 134 (355)
Q Consensus 60 ~~~~~~~L~~L~l~~~~~-l~~~~~~n~~~~~~~~~~~~~----~~~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~ 134 (355)
.+..+++|++|+++++.. +..+ +... ..++|+.|++++|......|..+..+++|++|++++
T Consensus 348 ~~~~l~~L~~L~Ls~n~~~~~~l-------------~~~~f~~~~~~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~ 414 (680)
T 1ziw_A 348 MFTGLINLKYLSLSNSFTSLRTL-------------TNETFVSLAHSPLHILNLTKNKISKIESDAFSWLGHLEVLDLGL 414 (680)
T ss_dssp TTTTCTTCCEEECTTCBSCCCEE-------------CTTTTGGGTTSCCCEEECTTSCCCEECTTTTTTCTTCCEEECCS
T ss_pred HhccccCCcEEECCCCchhhhhc-------------chhhhcccccCcCceEECCCCCCCeEChhhhhCCCCCCEEeCCC
Confidence 244455555555544321 1111 1111 115789999998873334466788899999999999
Q ss_pred cCCcCccc-ccccCCCCCceEeccccCCCcCCCCCCCCCCCcceEEEccccC--cCcccccccCCCCCceEEEeecCcC-
Q 018478 135 CENMKILP-SGLHNLRQLQEISIEGCGNLESFPEGGLPCAKLKEVVIRWCGR--LEALPKGLHNLKSLQKLTIGKGGLE- 210 (355)
Q Consensus 135 ~~~~~~~~-~~~~~l~~L~~L~l~~~~~l~~~~~~~~~~~~L~~L~l~~~~~--~~~~p~~l~~~~~L~~L~l~~~~i~- 210 (355)
|.....++ ..+..+++|+.|++++|......+..+..+++|+.|++.+|.. +...|..+..+++|++|+++.+.+.
T Consensus 415 N~l~~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~p~~~~~l~~L~~L~Ls~N~l~~ 494 (680)
T 1ziw_A 415 NEIGQELTGQEWRGLENIFEIYLSYNKYLQLTRNSFALVPSLQRLMLRRVALKNVDSSPSPFQPLRNLTILDLSNNNIAN 494 (680)
T ss_dssp SCCEEECCSGGGTTCTTCCEEECCSCSEEECCTTTTTTCTTCCEEECTTSCCBCTTCSSCTTTTCTTCCEEECCSSCCCC
T ss_pred CcCccccCcccccCcccccEEecCCCCcceeChhhhhcCcccccchhccccccccccCCcccccCCCCCEEECCCCCCCc
Confidence 88545555 5788899999999999853333456677789999999998753 2466788999999999999844433
Q ss_pred --C--CCCCCCccEEEecCCcchhhhhhhh----cccCCCCCccceeEecccCCcccccCccccccCCCCCCCCccceEE
Q 018478 211 --E--DGLPTNLHSLDIRGNMEIWKSMIEW----GQGFHRFSSLRELRIEGCDDDMVSFPPEDIRMGTTLPLPTSLTSLA 282 (355)
Q Consensus 211 --~--~~~~~~L~~L~l~~~~~~~~~~~~~----~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~ 282 (355)
. ...+++|+.|++++|.......... ...+.++++|++|++++ +.++.+|.+.+ ...++|++|+
T Consensus 495 i~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~~~~~~~~~l~~L~~L~L~~--N~l~~i~~~~~------~~l~~L~~L~ 566 (680)
T 1ziw_A 495 INDDMLEGLEKLEILDLQHNNLARLWKHANPGGPIYFLKGLSHLHILNLES--NGFDEIPVEVF------KDLFELKIID 566 (680)
T ss_dssp CCTTTTTTCTTCCEEECCSSCCGGGGSTTSTTSCCCTTTTCTTCCEEECCS--SCCCCCCTTTT------TTCTTCCEEE
T ss_pred CChhhhccccccCEEeCCCCCccccchhhccCCcchhhcCCCCCCEEECCC--CCCCCCCHHHc------ccccCcceeE
Confidence 2 3456899999999987443211100 01167889999999998 67778887543 5678999999
Q ss_pred eccCCCccccccc-CCCCCCccEEeeCCCCCCcccCCCC---CCCCccEEEecCCchhhHhhh
Q 018478 283 IFSFPNLERLSSS-IVDLQNLTSLYLVGCPKLKYFPEKG---LPSSLLELWIGGCPLIEEKCR 341 (355)
Q Consensus 283 l~~~~~l~~l~~~-~~~~~~L~~L~l~~~~~l~~~~~~~---~~~~L~~L~l~~c~~l~~~~~ 341 (355)
+++ +.++.+|.. +..+++|++|++++| +++.++... .+++|+++++.++|. .+.|+
T Consensus 567 Ls~-N~l~~l~~~~~~~l~~L~~L~L~~N-~l~~~~~~~~~~~~~~L~~l~l~~N~~-~c~c~ 626 (680)
T 1ziw_A 567 LGL-NNLNTLPASVFNNQVSLKSLNLQKN-LITSVEKKVFGPAFRNLTELDMRFNPF-DCTCE 626 (680)
T ss_dssp CCS-SCCCCCCTTTTTTCTTCCEEECTTS-CCCBCCHHHHHHHHTTCSEEECTTCCC-CBCCC
T ss_pred CCC-CCCCcCCHhHhCCCCCCCEEECCCC-cCCccChhHhcccccccCEEEccCCCc-ccCCc
Confidence 998 788888865 478999999999998 899887653 358999999998875 33444
No 22
>3vq2_A TLR4, TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, secreted, immune SY; HET: NAG LP4 LP5 DAO MYR; 2.48A {Mus musculus} PDB: 3vq1_A* 2z64_A*
Probab=99.88 E-value=8.1e-22 Score=192.00 Aligned_cols=261 Identities=15% Similarity=0.073 Sum_probs=196.1
Q ss_pred CCcceEecccCccccccccccCcCCCCCCCccccccccccEEEecCCCccchhccccccchhccccccCCCCCcccEEEE
Q 018478 29 RSLKRLDIQCCSNIRTLTMEEGIQSSSSSSSRRYTSYLLEELCISSCRSLTSIFSKNELSATLESLEVGNLPPSLKSLRV 108 (355)
Q Consensus 29 ~~L~~L~l~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~~~~~n~~~~~~~~~~~~~~~~~L~~L~l 108 (355)
++|++|++.++ .+..++ . +..+++|++|++++|.. ..+ +.. .+++|+.|++
T Consensus 285 ~~L~~L~l~~~-~~~~l~-~------------l~~~~~L~~L~l~~n~l-~~l-------------p~~-~l~~L~~L~l 335 (606)
T 3vq2_A 285 ANVSAMSLAGV-SIKYLE-D------------VPKHFKWQSLSIIRCQL-KQF-------------PTL-DLPFLKSLTL 335 (606)
T ss_dssp TTCSEEEEESC-CCCCCC-C------------CCTTCCCSEEEEESCCC-SSC-------------CCC-CCSSCCEEEE
T ss_pred CCCCEEEecCc-cchhhh-h------------ccccccCCEEEcccccC-ccc-------------ccC-CCCccceeec
Confidence 78888888884 456666 2 34478899999988754 666 644 5678999999
Q ss_pred ccCcchhchhhhccCCCCCcEEEeeccCCcCcc---cccccCCCCCceEeccccCCCcCCCCCCCCCCCcceEEEccccC
Q 018478 109 QGCSKLESIAETLDNSTSLETIHIFYCENMKIL---PSGLHNLRQLQEISIEGCGNLESFPEGGLPCAKLKEVVIRWCGR 185 (355)
Q Consensus 109 ~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~---~~~~~~l~~L~~L~l~~~~~l~~~~~~~~~~~~L~~L~l~~~~~ 185 (355)
++|.....+ .+..+++|++|++++|. +... +..+..+++|+.|++++| .+..+|..+..+++|+.|++++|..
T Consensus 336 ~~n~~~~~~--~~~~l~~L~~L~ls~n~-l~~~~~~~~~~~~~~~L~~L~L~~n-~l~~~~~~~~~l~~L~~L~l~~n~l 411 (606)
T 3vq2_A 336 TMNKGSISF--KKVALPSLSYLDLSRNA-LSFSGCCSYSDLGTNSLRHLDLSFN-GAIIMSANFMGLEELQHLDFQHSTL 411 (606)
T ss_dssp ESCSSCEEC--CCCCCTTCCEEECCSSC-EEEEEECCHHHHCCSCCCEEECCSC-SEEEECCCCTTCTTCCEEECTTSEE
T ss_pred cCCcCccch--hhccCCCCCEEECcCCc-cCCCcchhhhhccCCcccEeECCCC-ccccchhhccCCCCCCeeECCCCcc
Confidence 998645544 45678999999999887 4443 677888999999999987 5777888888899999999999765
Q ss_pred cCccc-ccccCCCCCceEEEeecCcC-----CCCCCCCccEEEecCCcchhhhhhhhcccCCCCCccceeEecccCCccc
Q 018478 186 LEALP-KGLHNLKSLQKLTIGKGGLE-----EDGLPTNLHSLDIRGNMEIWKSMIEWGQGFHRFSSLRELRIEGCDDDMV 259 (355)
Q Consensus 186 ~~~~p-~~l~~~~~L~~L~l~~~~i~-----~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~ 259 (355)
....| ..+..+++|++|+++.+.+. ....+++|+.|++++|.......+. . +..+++|++|++++ +.+.
T Consensus 412 ~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~-~--~~~l~~L~~L~Ls~--n~l~ 486 (606)
T 3vq2_A 412 KRVTEFSAFLSLEKLLYLDISYTNTKIDFDGIFLGLTSLNTLKMAGNSFKDNTLSN-V--FANTTNLTFLDLSK--CQLE 486 (606)
T ss_dssp ESTTTTTTTTTCTTCCEEECTTSCCEECCTTTTTTCTTCCEEECTTCEEGGGEECS-C--CTTCTTCCEEECTT--SCCC
T ss_pred CCccChhhhhccccCCEEECcCCCCCccchhhhcCCCCCCEEECCCCcCCCcchHH-h--hccCCCCCEEECCC--CcCC
Confidence 55445 57888999999999843332 2456789999999998755432222 2 78899999999998 4555
Q ss_pred ccCccccccCCCCCCCCccceEEeccCCCcccc-cccCCCCCCccEEeeCCCCCCcccCCC--CCCCCccEEEecCCch
Q 018478 260 SFPPEDIRMGTTLPLPTSLTSLAIFSFPNLERL-SSSIVDLQNLTSLYLVGCPKLKYFPEK--GLPSSLLELWIGGCPL 335 (355)
Q Consensus 260 ~~~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~l-~~~~~~~~~L~~L~l~~~~~l~~~~~~--~~~~~L~~L~l~~c~~ 335 (355)
.+++..+ ..+++|++|++++| .++.+ |..+..+++|++|++++| +++.+|.. .++.+|++|++.++|.
T Consensus 487 ~~~~~~~------~~l~~L~~L~Ls~N-~l~~~~~~~~~~l~~L~~L~l~~N-~l~~~p~~~~~l~~~L~~l~l~~N~~ 557 (606)
T 3vq2_A 487 QISWGVF------DTLHRLQLLNMSHN-NLLFLDSSHYNQLYSLSTLDCSFN-RIETSKGILQHFPKSLAFFNLTNNSV 557 (606)
T ss_dssp EECTTTT------TTCTTCCEEECCSS-CCSCEEGGGTTTCTTCCEEECTTS-CCCCEESCGGGSCTTCCEEECCSCCC
T ss_pred ccChhhh------cccccCCEEECCCC-cCCCcCHHHccCCCcCCEEECCCC-cCcccCHhHhhhcccCcEEEccCCCc
Confidence 5544322 56789999999995 55554 777889999999999998 79988875 1234799999988764
No 23
>3vq2_A TLR4, TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, secreted, immune SY; HET: NAG LP4 LP5 DAO MYR; 2.48A {Mus musculus} PDB: 3vq1_A* 2z64_A*
Probab=99.88 E-value=1.1e-21 Score=191.08 Aligned_cols=116 Identities=22% Similarity=0.244 Sum_probs=58.0
Q ss_pred CCccEEeecccccCcccccCccC--CCcceEecccCcccccccccc--CcCCCCC-----------CCccccccccccEE
Q 018478 6 SSLEILEIWSCRSLTYLAAVQLP--RSLKRLDIQCCSNIRTLTMEE--GIQSSSS-----------SSSRRYTSYLLEEL 70 (355)
Q Consensus 6 ~~L~~L~l~~~~~l~~l~~~~~~--~~L~~L~l~~~~~l~~~~~~~--~~~~~~~-----------~~~~~~~~~~L~~L 70 (355)
+++++|++++ +.++.++...+. ++|++|+++++ .+..++... +++++.. .+..+..+++|++|
T Consensus 32 ~~l~~L~Ls~-n~l~~~~~~~~~~l~~L~~L~Ls~n-~l~~i~~~~~~~l~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L 109 (606)
T 3vq2_A 32 SSTKNIDLSF-NPLKILKSYSFSNFSELQWLDLSRC-EIETIEDKAWHGLHHLSNLILTGNPIQSFSPGSFSGLTSLENL 109 (606)
T ss_dssp TTCCEEECTT-SCCCEECTTTTTTCTTCCEEECTTC-CCCEECTTTTTTCTTCCEEECTTCCCCCCCTTSSTTCTTCCEE
T ss_pred CCcCEEECCC-CCcCEeChhhccCCccCcEEeCCCC-cccccCHHHhhchhhcCEeECCCCcccccChhhcCCcccCCEE
Confidence 4577777764 355666554443 67777777764 355543321 1111100 02223445555555
Q ss_pred EecCCCccchhccccccchhccccccCCCCCcccEEEEccCcchh--chhhhccCCCCCcEEEeeccC
Q 018478 71 CISSCRSLTSIFSKNELSATLESLEVGNLPPSLKSLRVQGCSKLE--SIAETLDNSTSLETIHIFYCE 136 (355)
Q Consensus 71 ~l~~~~~l~~~~~~n~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~--~~~~~~~~l~~L~~L~l~~~~ 136 (355)
+++++. ++.+ .+ .....+++|++|++++|. +. .+|..++++++|++|++++|.
T Consensus 110 ~L~~n~-l~~~---------~~--~~~~~l~~L~~L~L~~n~-l~~~~lp~~~~~l~~L~~L~Ls~n~ 164 (606)
T 3vq2_A 110 VAVETK-LASL---------ES--FPIGQLITLKKLNVAHNF-IHSCKLPAYFSNLTNLVHVDLSYNY 164 (606)
T ss_dssp ECTTSC-CCCS---------SS--SCCTTCTTCCEEECCSSC-CCCCCCCGGGGTCTTCCEEECCSSC
T ss_pred EccCCc-cccc---------cc--cccCCCCCCCEEeCCCCc-ccceechHhHhhcCCCCEEEccCCc
Confidence 555432 2222 00 011334566666666665 33 356666666666666666665
No 24
>4ecn_A Leucine-rich repeat protein; leucine-rich repeats, DUF4458 domain, protein binding, extra protein, structural genomics; 2.80A {Bacteroides thetaiotaomicron}
Probab=99.88 E-value=6.4e-22 Score=197.90 Aligned_cols=282 Identities=15% Similarity=0.163 Sum_probs=163.5
Q ss_pred CCcceEecccCccccc------------------cccccCcCCCCCCCccccccccccEEEecCCCccchh---------
Q 018478 29 RSLKRLDIQCCSNIRT------------------LTMEEGIQSSSSSSSRRYTSYLLEELCISSCRSLTSI--------- 81 (355)
Q Consensus 29 ~~L~~L~l~~~~~l~~------------------~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~~--------- 81 (355)
++|++|+++++ .+.. +|..++ |..+++|++|++++|.....+
T Consensus 448 ~~L~~L~Ls~N-~Lsg~~i~~~~~~~s~n~~~g~iP~~l~----------f~~L~~L~~L~Ls~N~l~~~iP~~l~~L~~ 516 (876)
T 4ecn_A 448 TKLQIIYFANS-PFTYDNIAVDWEDANSDYAKQYENEELS----------WSNLKDLTDVELYNCPNMTQLPDFLYDLPE 516 (876)
T ss_dssp TTCCEEEEESC-CCCGGGBSSSCSCTTSHHHHHHTTSCCC----------GGGCTTCCEEEEESCTTCCSCCGGGGGCSS
T ss_pred CCCCEEECcCC-cCCCCcccccccccccccccccCChhhh----------hccCCCCCEEECcCCCCCccChHHHhCCCC
Confidence 78999999985 4665 555431 226899999999877432222
Q ss_pred -----ccccc-cch-hccc----cc-cCCCCCcccEEEEccCcchhchhh--hccCCCCCcEEEeeccCCcCcccccccC
Q 018478 82 -----FSKNE-LSA-TLES----LE-VGNLPPSLKSLRVQGCSKLESIAE--TLDNSTSLETIHIFYCENMKILPSGLHN 147 (355)
Q Consensus 82 -----~~~n~-~~~-~~~~----~~-~~~~~~~L~~L~l~~~~~~~~~~~--~~~~l~~L~~L~l~~~~~~~~~~~~~~~ 147 (355)
+++|. +.+ .++. .. ....+++|+.|++++|. +..+|. .++.+++|+.|++++|. +..+| .++.
T Consensus 517 L~~L~Ls~N~~lsg~~iP~~i~~L~~~~~~l~~L~~L~Ls~N~-L~~ip~~~~l~~L~~L~~L~Ls~N~-l~~lp-~~~~ 593 (876)
T 4ecn_A 517 LQSLNIACNRGISAAQLKADWTRLADDEDTGPKIQIFYMGYNN-LEEFPASASLQKMVKLGLLDCVHNK-VRHLE-AFGT 593 (876)
T ss_dssp CCEEECTTCTTSCHHHHHHHHHHHHHCTTTTTTCCEEECCSSC-CCBCCCHHHHTTCTTCCEEECTTSC-CCBCC-CCCT
T ss_pred CCEEECcCCCCcccccchHHHHhhhhcccccCCccEEEeeCCc-CCccCChhhhhcCCCCCEEECCCCC-cccch-hhcC
Confidence 33443 332 2211 00 01122355555555555 335554 55555555555555555 33555 4555
Q ss_pred CCCCceEeccccCCCcCCCCCCCCCCC-cceEEEccccCcCcccccccCCCC--CceEEEeecCc----CCCC------C
Q 018478 148 LRQLQEISIEGCGNLESFPEGGLPCAK-LKEVVIRWCGRLEALPKGLHNLKS--LQKLTIGKGGL----EEDG------L 214 (355)
Q Consensus 148 l~~L~~L~l~~~~~l~~~~~~~~~~~~-L~~L~l~~~~~~~~~p~~l~~~~~--L~~L~l~~~~i----~~~~------~ 214 (355)
+++|+.|++++| .+..+|..+..+++ |+.|++++|. ++.+|..+..++. |+.|+++.+.+ +... .
T Consensus 594 L~~L~~L~Ls~N-~l~~lp~~l~~l~~~L~~L~Ls~N~-L~~lp~~~~~~~~~~L~~L~Ls~N~l~g~ip~l~~~l~~~~ 671 (876)
T 4ecn_A 594 NVKLTDLKLDYN-QIEEIPEDFCAFTDQVEGLGFSHNK-LKYIPNIFNAKSVYVMGSVDFSYNKIGSEGRNISCSMDDYK 671 (876)
T ss_dssp TSEESEEECCSS-CCSCCCTTSCEECTTCCEEECCSSC-CCSCCSCCCTTCSSCEEEEECCSSCTTTTSSSCSSCTTTCC
T ss_pred CCcceEEECcCC-ccccchHHHhhccccCCEEECcCCC-CCcCchhhhccccCCCCEEECcCCcCCCccccchhhhcccc
Confidence 555555555554 33455555555555 6666665543 3355544444332 55665553332 1111 1
Q ss_pred CCCccEEEecCCcchhhhhhhhcccCCCCCccceeEecccCCcccccCccccccCC-CCCCCCccceEEeccCCCccccc
Q 018478 215 PTNLHSLDIRGNMEIWKSMIEWGQGFHRFSSLRELRIEGCDDDMVSFPPEDIRMGT-TLPLPTSLTSLAIFSFPNLERLS 293 (355)
Q Consensus 215 ~~~L~~L~l~~~~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~-~~~~~~~L~~L~l~~~~~l~~l~ 293 (355)
.++|+.|++++|... .++..+ +..+++|+.|++++ +.+..+|...+.... ....+++|++|++++ +.++.+|
T Consensus 672 ~~~L~~L~Ls~N~L~-~lp~~~---~~~l~~L~~L~Ls~--N~L~~ip~~~~~~~~~~l~nl~~L~~L~Ls~-N~L~~lp 744 (876)
T 4ecn_A 672 GINASTVTLSYNEIQ-KFPTEL---FATGSPISTIILSN--NLMTSIPENSLKPKDGNYKNTYLLTTIDLRF-NKLTSLS 744 (876)
T ss_dssp CCCEEEEECCSSCCC-SCCHHH---HHTTCCCSEEECCS--CCCSCCCTTSSSCTTSCCTTGGGCCEEECCS-SCCCCCC
T ss_pred CCCcCEEEccCCcCC-ccCHHH---HccCCCCCEEECCC--CcCCccChHHhccccccccccCCccEEECCC-CCCccch
Confidence 236777777776543 333322 45678888888887 466677765521000 001123899999998 5778888
Q ss_pred ccCC--CCCCccEEeeCCCCCCcccCCCC-CCCCccEEEecCCc
Q 018478 294 SSIV--DLQNLTSLYLVGCPKLKYFPEKG-LPSSLLELWIGGCP 334 (355)
Q Consensus 294 ~~~~--~~~~L~~L~l~~~~~l~~~~~~~-~~~~L~~L~l~~c~ 334 (355)
..+. .+++|+.|++++| +++.+|... -+++|++|++++|+
T Consensus 745 ~~l~~~~l~~L~~L~Ls~N-~L~~lp~~l~~L~~L~~L~Ls~N~ 787 (876)
T 4ecn_A 745 DDFRATTLPYLSNMDVSYN-CFSSFPTQPLNSSQLKAFGIRHQR 787 (876)
T ss_dssp GGGSTTTCTTCCEEECCSS-CCSSCCCGGGGCTTCCEEECCCCB
T ss_pred HHhhhccCCCcCEEEeCCC-CCCccchhhhcCCCCCEEECCCCC
Confidence 8776 8999999999998 788876532 27899999998755
No 25
>2z7x_B TOLL-like receptor 1, variable lymphocyte recepto; TLR2, TLR1, lipopeptide, innate immunity, glycoPro immune response, inflammatory response, leucine-rich repeat membrane, receptor; HET: NAG NDG MAN BMA PCJ; 2.10A {Homo sapiens}
Probab=99.88 E-value=2.1e-21 Score=185.60 Aligned_cols=122 Identities=19% Similarity=0.161 Sum_probs=70.6
Q ss_pred CCccEEeecccccCcccccCccC--CCcceEecccCccccccccccCcCCCCCCCccccccccccEEEecCCCccchhcc
Q 018478 6 SSLEILEIWSCRSLTYLAAVQLP--RSLKRLDIQCCSNIRTLTMEEGIQSSSSSSSRRYTSYLLEELCISSCRSLTSIFS 83 (355)
Q Consensus 6 ~~L~~L~l~~~~~l~~l~~~~~~--~~L~~L~l~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~~~~ 83 (355)
++|++|+++++ .++.+++..+. ++|++|+++++ .+..++... +..+++|++|+++++ .++.+
T Consensus 21 ~~L~~L~Ls~n-~i~~~~~~~~~~l~~L~~L~Ls~n-~l~~~~~~~-----------~~~l~~L~~L~Ls~N-~l~~l-- 84 (520)
T 2z7x_B 21 QKTTILNISQN-YISELWTSDILSLSKLRILIISHN-RIQYLDISV-----------FKFNQELEYLDLSHN-KLVKI-- 84 (520)
T ss_dssp TTCSEEECCSS-CCCCCCHHHHTTCTTCCEEECCSS-CCCEEEGGG-----------GTTCTTCCEEECCSS-CCCEE--
T ss_pred ccccEEECCCC-cccccChhhccccccccEEecCCC-ccCCcChHH-----------hhcccCCCEEecCCC-ceeec--
Confidence 46777777654 35544433332 66777777773 455543322 455777888888765 44455
Q ss_pred ccccchhccccccCCCCCcccEEEEccCcchhc--hhhhccCCCCCcEEEeeccCCcCcccccccCCCCC--ceEecccc
Q 018478 84 KNELSATLESLEVGNLPPSLKSLRVQGCSKLES--IAETLDNSTSLETIHIFYCENMKILPSGLHNLRQL--QEISIEGC 159 (355)
Q Consensus 84 ~n~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~--~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~l~~L--~~L~l~~~ 159 (355)
+.. .+++|++|++++|. +.. +|..++.+++|++|++++|. +.. ..+..+++| +.|++++|
T Consensus 85 -----------p~~-~l~~L~~L~L~~N~-l~~~~~p~~~~~l~~L~~L~L~~n~-l~~--~~~~~l~~L~L~~L~l~~n 148 (520)
T 2z7x_B 85 -----------SCH-PTVNLKHLDLSFNA-FDALPICKEFGNMSQLKFLGLSTTH-LEK--SSVLPIAHLNISKVLLVLG 148 (520)
T ss_dssp -----------ECC-CCCCCSEEECCSSC-CSSCCCCGGGGGCTTCCEEEEEESS-CCG--GGGGGGTTSCEEEEEEEEC
T ss_pred -----------Ccc-ccCCccEEeccCCc-cccccchhhhccCCcceEEEecCcc-cch--hhccccccceeeEEEeecc
Confidence 544 45677777777776 443 45666777777777777765 322 123334444 55555544
No 26
>4fcg_A Uncharacterized protein; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, LRR, N- and C-terminal helices; 2.00A {Xanthomonas campestris PV}
Probab=99.88 E-value=4.2e-22 Score=179.24 Aligned_cols=214 Identities=23% Similarity=0.307 Sum_probs=107.3
Q ss_pred cccEEEEccCcchhchhhhccCCCCCcEEEeeccCCcCcccccccCCCCCceEeccccCCCcCCCCCCCCCCCcceEEEc
Q 018478 102 SLKSLRVQGCSKLESIAETLDNSTSLETIHIFYCENMKILPSGLHNLRQLQEISIEGCGNLESFPEGGLPCAKLKEVVIR 181 (355)
Q Consensus 102 ~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~l~~~~~~~~~~~~L~~L~l~ 181 (355)
+++.|++++|. +..+|+.++.+++|++|++++|. +..+|..++.+++|+.|++++| .+..+|..+..+++|+.|+++
T Consensus 82 ~l~~L~L~~n~-l~~lp~~l~~l~~L~~L~L~~n~-l~~lp~~~~~l~~L~~L~Ls~n-~l~~lp~~l~~l~~L~~L~L~ 158 (328)
T 4fcg_A 82 GRVALELRSVP-LPQFPDQAFRLSHLQHMTIDAAG-LMELPDTMQQFAGLETLTLARN-PLRALPASIASLNRLRELSIR 158 (328)
T ss_dssp TCCEEEEESSC-CSSCCSCGGGGTTCSEEEEESSC-CCCCCSCGGGGTTCSEEEEESC-CCCCCCGGGGGCTTCCEEEEE
T ss_pred ceeEEEccCCC-chhcChhhhhCCCCCEEECCCCC-ccchhHHHhccCCCCEEECCCC-ccccCcHHHhcCcCCCEEECC
Confidence 44555555444 44444444445555555555444 3344444444555555555544 333444444444555555555
Q ss_pred cccCcCcccccccC---------CCCCceEEEeecCcC---C-CCCCCCccEEEecCCcchhhhhhhhcccCCCCCccce
Q 018478 182 WCGRLEALPKGLHN---------LKSLQKLTIGKGGLE---E-DGLPTNLHSLDIRGNMEIWKSMIEWGQGFHRFSSLRE 248 (355)
Q Consensus 182 ~~~~~~~~p~~l~~---------~~~L~~L~l~~~~i~---~-~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~l~~L~~ 248 (355)
+|+....+|..+.. +++|++|+++.+.+. . ...+++|+.|++++|... ..+.. +..+++|++
T Consensus 159 ~n~~~~~~p~~~~~~~~~~~~~~l~~L~~L~L~~n~l~~lp~~l~~l~~L~~L~L~~N~l~-~l~~~----l~~l~~L~~ 233 (328)
T 4fcg_A 159 ACPELTELPEPLASTDASGEHQGLVNLQSLRLEWTGIRSLPASIANLQNLKSLKIRNSPLS-ALGPA----IHHLPKLEE 233 (328)
T ss_dssp EETTCCCCCSCSEEEC-CCCEEESTTCCEEEEEEECCCCCCGGGGGCTTCCEEEEESSCCC-CCCGG----GGGCTTCCE
T ss_pred CCCCccccChhHhhccchhhhccCCCCCEEECcCCCcCcchHhhcCCCCCCEEEccCCCCC-cCchh----hccCCCCCE
Confidence 54444444443322 455555555522222 1 123345555555555432 22221 445566666
Q ss_pred eEecccCCcccccCccccccCCCCCCCCccceEEeccCCCcccccccCCCCCCccEEeeCCCCCCcccCCCC-CCCCccE
Q 018478 249 LRIEGCDDDMVSFPPEDIRMGTTLPLPTSLTSLAIFSFPNLERLSSSIVDLQNLTSLYLVGCPKLKYFPEKG-LPSSLLE 327 (355)
Q Consensus 249 L~l~~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~l~~~~~~~~~L~~L~l~~~~~l~~~~~~~-~~~~L~~ 327 (355)
|++++ |.....+|..+ ..+++|++|++++|+....+|..+..+++|++|++++|..+..+|... -+++|+.
T Consensus 234 L~Ls~-n~~~~~~p~~~-------~~l~~L~~L~L~~n~~~~~~p~~~~~l~~L~~L~L~~n~~~~~iP~~l~~L~~L~~ 305 (328)
T 4fcg_A 234 LDLRG-CTALRNYPPIF-------GGRAPLKRLILKDCSNLLTLPLDIHRLTQLEKLDLRGCVNLSRLPSLIAQLPANCI 305 (328)
T ss_dssp EECTT-CTTCCBCCCCT-------TCCCCCCEEECTTCTTCCBCCTTGGGCTTCCEEECTTCTTCCCCCGGGGGSCTTCE
T ss_pred EECcC-CcchhhhHHHh-------cCCCCCCEEECCCCCchhhcchhhhcCCCCCEEeCCCCCchhhccHHHhhccCceE
Confidence 66666 45555555444 345566666666665556666666666666666666665555555421 1455666
Q ss_pred EEec
Q 018478 328 LWIG 331 (355)
Q Consensus 328 L~l~ 331 (355)
+++.
T Consensus 306 l~l~ 309 (328)
T 4fcg_A 306 ILVP 309 (328)
T ss_dssp EECC
T ss_pred EeCC
Confidence 6554
No 27
>1xku_A Decorin; proteoglycan, leucine-rich repeat, structural protein; HET: NAG; 2.15A {Bos taurus} SCOP: c.10.2.7 PDB: 1xec_A* 1xcd_A*
Probab=99.88 E-value=3e-21 Score=173.87 Aligned_cols=259 Identities=14% Similarity=0.158 Sum_probs=188.0
Q ss_pred CCcceEecccCccccccccccCcCCCCCCCccccccccccEEEecCCCccchhccccccchhcccccc--CCCCCcccEE
Q 018478 29 RSLKRLDIQCCSNIRTLTMEEGIQSSSSSSSRRYTSYLLEELCISSCRSLTSIFSKNELSATLESLEV--GNLPPSLKSL 106 (355)
Q Consensus 29 ~~L~~L~l~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~~~~~n~~~~~~~~~~~--~~~~~~L~~L 106 (355)
.+++.++++++ .++.+|... .++++.|+++++ .++.+ +. ...+++|++|
T Consensus 31 c~l~~l~~~~~-~l~~lp~~~--------------~~~l~~L~L~~n-~i~~~-------------~~~~~~~l~~L~~L 81 (330)
T 1xku_A 31 CHLRVVQCSDL-GLEKVPKDL--------------PPDTALLDLQNN-KITEI-------------KDGDFKNLKNLHTL 81 (330)
T ss_dssp EETTEEECTTS-CCCSCCCSC--------------CTTCCEEECCSS-CCCCB-------------CTTTTTTCTTCCEE
T ss_pred CCCeEEEecCC-CccccCccC--------------CCCCeEEECCCC-cCCEe-------------ChhhhccCCCCCEE
Confidence 36788888773 467777655 567888888875 44544 32 2445788888
Q ss_pred EEccCcchhch-hhhccCCCCCcEEEeeccCCcCcccccccCCCCCceEeccccCCCcCCC-CCCCCCCCcceEEEcccc
Q 018478 107 RVQGCSKLESI-AETLDNSTSLETIHIFYCENMKILPSGLHNLRQLQEISIEGCGNLESFP-EGGLPCAKLKEVVIRWCG 184 (355)
Q Consensus 107 ~l~~~~~~~~~-~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~l~~~~-~~~~~~~~L~~L~l~~~~ 184 (355)
++++|. +..+ |..+..+++|++|++++|. ++.+|..+. ++|+.|++++| .+..++ ..+..+++|+.|++++|.
T Consensus 82 ~L~~n~-l~~~~~~~~~~l~~L~~L~Ls~n~-l~~l~~~~~--~~L~~L~l~~n-~l~~~~~~~~~~l~~L~~L~l~~n~ 156 (330)
T 1xku_A 82 ILINNK-ISKISPGAFAPLVKLERLYLSKNQ-LKELPEKMP--KTLQELRVHEN-EITKVRKSVFNGLNQMIVVELGTNP 156 (330)
T ss_dssp ECCSSC-CCCBCTTTTTTCTTCCEEECCSSC-CSBCCSSCC--TTCCEEECCSS-CCCBBCHHHHTTCTTCCEEECCSSC
T ss_pred ECCCCc-CCeeCHHHhcCCCCCCEEECCCCc-CCccChhhc--ccccEEECCCC-cccccCHhHhcCCccccEEECCCCc
Confidence 888887 5554 6778888888888888877 667766553 68888888887 455554 345667888888888865
Q ss_pred CcC--cccccccCCCCCceEEEeecCcCCC--CCCCCccEEEecCCcchhhhhhhhcccCCCCCccceeEecccCCcccc
Q 018478 185 RLE--ALPKGLHNLKSLQKLTIGKGGLEED--GLPTNLHSLDIRGNMEIWKSMIEWGQGFHRFSSLRELRIEGCDDDMVS 260 (355)
Q Consensus 185 ~~~--~~p~~l~~~~~L~~L~l~~~~i~~~--~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~ 260 (355)
... ..+..+..+++|++|+++.+.+... ...++|+.|++++|.... .... . +..+++|++|++++ +.+..
T Consensus 157 l~~~~~~~~~~~~l~~L~~L~l~~n~l~~l~~~~~~~L~~L~l~~n~l~~-~~~~-~--~~~l~~L~~L~Ls~--n~l~~ 230 (330)
T 1xku_A 157 LKSSGIENGAFQGMKKLSYIRIADTNITTIPQGLPPSLTELHLDGNKITK-VDAA-S--LKGLNNLAKLGLSF--NSISA 230 (330)
T ss_dssp CCGGGBCTTGGGGCTTCCEEECCSSCCCSCCSSCCTTCSEEECTTSCCCE-ECTG-G--GTTCTTCCEEECCS--SCCCE
T ss_pred CCccCcChhhccCCCCcCEEECCCCccccCCccccccCCEEECCCCcCCc-cCHH-H--hcCCCCCCEEECCC--CcCce
Confidence 421 3456778888899988884444332 234799999999987443 3222 1 77889999999998 55666
Q ss_pred cCccccccCCCCCCCCccceEEeccCCCcccccccCCCCCCccEEeeCCCCCCcccCCCCC--------CCCccEEEecC
Q 018478 261 FPPEDIRMGTTLPLPTSLTSLAIFSFPNLERLSSSIVDLQNLTSLYLVGCPKLKYFPEKGL--------PSSLLELWIGG 332 (355)
Q Consensus 261 ~~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~l~~~~~~~~~L~~L~l~~~~~l~~~~~~~~--------~~~L~~L~l~~ 332 (355)
++...+ ..+++|++|++++ +.++.+|.++..+++|++|++++| +++.++...+ .++++.+++.+
T Consensus 231 ~~~~~~------~~l~~L~~L~L~~-N~l~~lp~~l~~l~~L~~L~l~~N-~i~~~~~~~f~~~~~~~~~~~l~~l~l~~ 302 (330)
T 1xku_A 231 VDNGSL------ANTPHLRELHLNN-NKLVKVPGGLADHKYIQVVYLHNN-NISAIGSNDFCPPGYNTKKASYSGVSLFS 302 (330)
T ss_dssp ECTTTG------GGSTTCCEEECCS-SCCSSCCTTTTTCSSCCEEECCSS-CCCCCCTTSSSCSSCCTTSCCCSEEECCS
T ss_pred eChhhc------cCCCCCCEEECCC-CcCccCChhhccCCCcCEEECCCC-cCCccChhhcCCcccccccccccceEeec
Confidence 654322 4678999999998 588899988889999999999998 7888876544 36788999998
Q ss_pred Cch
Q 018478 333 CPL 335 (355)
Q Consensus 333 c~~ 335 (355)
+|-
T Consensus 303 N~~ 305 (330)
T 1xku_A 303 NPV 305 (330)
T ss_dssp SSS
T ss_pred Ccc
Confidence 875
No 28
>3bz5_A Internalin-J, INLJ; leucine rich repeat (LRR), cysteine ladder, asparagine ladder, virulence factor, solenoid, cell WALL; 2.70A {Listeria monocytogenes}
Probab=99.88 E-value=1.6e-21 Score=183.14 Aligned_cols=278 Identities=16% Similarity=0.139 Sum_probs=136.6
Q ss_pred CCCCccEEeecccccCcccccCccCCCcceEecccCccccccccccCcCCCCCCCccccccccccEEEecCCCccchhcc
Q 018478 4 TNSSLEILEIWSCRSLTYLAAVQLPRSLKRLDIQCCSNIRTLTMEEGIQSSSSSSSRRYTSYLLEELCISSCRSLTSIFS 83 (355)
Q Consensus 4 ~~~~L~~L~l~~~~~l~~l~~~~~~~~L~~L~l~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~~~~ 83 (355)
++++|++|+++++ .++.++.....++|++|+++++ .++.++. ..+++|++|+++++ .++.+
T Consensus 40 ~l~~L~~L~Ls~n-~l~~~~~l~~l~~L~~L~Ls~n-~l~~~~~--------------~~l~~L~~L~Ls~N-~l~~~-- 100 (457)
T 3bz5_A 40 QLATLTSLDCHNS-SITDMTGIEKLTGLTKLICTSN-NITTLDL--------------SQNTNLTYLACDSN-KLTNL-- 100 (457)
T ss_dssp HHTTCCEEECCSS-CCCCCTTGGGCTTCSEEECCSS-CCSCCCC--------------TTCTTCSEEECCSS-CCSCC--
T ss_pred HcCCCCEEEccCC-CcccChhhcccCCCCEEEccCC-cCCeEcc--------------ccCCCCCEEECcCC-CCcee--
Confidence 3688899999865 5666653333488999999984 4676652 22667777777664 23333
Q ss_pred ccccchhccccccCCCCCcccEEEEccCcchhchhhhccCCCCCcEEEeeccCCcCcccccccCCCCCceEeccccCCCc
Q 018478 84 KNELSATLESLEVGNLPPSLKSLRVQGCSKLESIAETLDNSTSLETIHIFYCENMKILPSGLHNLRQLQEISIEGCGNLE 163 (355)
Q Consensus 84 ~n~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~l~ 163 (355)
+. ..+++|+.|++++|. +..++ ++.+++|++|++++|. ++.++ ++.+++|+.|++++|..+.
T Consensus 101 -----------~~-~~l~~L~~L~L~~N~-l~~l~--~~~l~~L~~L~l~~N~-l~~l~--l~~l~~L~~L~l~~n~~~~ 162 (457)
T 3bz5_A 101 -----------DV-TPLTKLTYLNCDTNK-LTKLD--VSQNPLLTYLNCARNT-LTEID--VSHNTQLTELDCHLNKKIT 162 (457)
T ss_dssp -----------CC-TTCTTCCEEECCSSC-CSCCC--CTTCTTCCEEECTTSC-CSCCC--CTTCTTCCEEECTTCSCCC
T ss_pred -----------ec-CCCCcCCEEECCCCc-CCeec--CCCCCcCCEEECCCCc-cceec--cccCCcCCEEECCCCCccc
Confidence 31 223455555555554 44342 4445555555555544 33332 4444555555555443333
Q ss_pred CCCCCCCCCCCcceEEEccccCcCcccccccCCCCCceEEEeecCcCC--CCCCCCccEEEecCCcchhhhhhhhcccCC
Q 018478 164 SFPEGGLPCAKLKEVVIRWCGRLEALPKGLHNLKSLQKLTIGKGGLEE--DGLPTNLHSLDIRGNMEIWKSMIEWGQGFH 241 (355)
Q Consensus 164 ~~~~~~~~~~~L~~L~l~~~~~~~~~p~~l~~~~~L~~L~l~~~~i~~--~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~ 241 (355)
.+ .+..+++|+.|++++| .++.+| +..+++|+.|+++.+.+.. ...+++|+.|++++|.... ++ +.
T Consensus 163 ~~--~~~~l~~L~~L~ls~n-~l~~l~--l~~l~~L~~L~l~~N~l~~~~l~~l~~L~~L~Ls~N~l~~-ip------~~ 230 (457)
T 3bz5_A 163 KL--DVTPQTQLTTLDCSFN-KITELD--VSQNKLLNRLNCDTNNITKLDLNQNIQLTFLDCSSNKLTE-ID------VT 230 (457)
T ss_dssp CC--CCTTCTTCCEEECCSS-CCCCCC--CTTCTTCCEEECCSSCCSCCCCTTCTTCSEEECCSSCCSC-CC------CT
T ss_pred cc--ccccCCcCCEEECCCC-ccceec--cccCCCCCEEECcCCcCCeeccccCCCCCEEECcCCcccc-cC------cc
Confidence 33 1333444555555443 233332 3444444444444222221 2223444444444443211 11 23
Q ss_pred CCCccceeEecccCCcccccCcccccc-----------------------CCCCCCCCccceEEeccCCCccccccc---
Q 018478 242 RFSSLRELRIEGCDDDMVSFPPEDIRM-----------------------GTTLPLPTSLTSLAIFSFPNLERLSSS--- 295 (355)
Q Consensus 242 ~l~~L~~L~l~~~~~~~~~~~~~~~~~-----------------------~~~~~~~~~L~~L~l~~~~~l~~l~~~--- 295 (355)
.+++|++|++++ +.++.++...+.- ......+++|+.|++++|..+..+|..
T Consensus 231 ~l~~L~~L~l~~--N~l~~~~~~~l~~L~~L~l~~n~L~~L~l~~n~~~~~~~~~~l~~L~~L~Ls~n~~l~~l~~~~~~ 308 (457)
T 3bz5_A 231 PLTQLTYFDCSV--NPLTELDVSTLSKLTTLHCIQTDLLEIDLTHNTQLIYFQAEGCRKIKELDVTHNTQLYLLDCQAAG 308 (457)
T ss_dssp TCTTCSEEECCS--SCCSCCCCTTCTTCCEEECTTCCCSCCCCTTCTTCCEEECTTCTTCCCCCCTTCTTCCEEECTTCC
T ss_pred ccCCCCEEEeeC--CcCCCcCHHHCCCCCEEeccCCCCCEEECCCCccCCcccccccccCCEEECCCCcccceeccCCCc
Confidence 334444444443 2222222100000 000023466777777776555444421
Q ss_pred -----CCCCCCccEEeeCCCCCCcccCCCCCCCCccEEEecCCc
Q 018478 296 -----IVDLQNLTSLYLVGCPKLKYFPEKGLPSSLLELWIGGCP 334 (355)
Q Consensus 296 -----~~~~~~L~~L~l~~~~~l~~~~~~~~~~~L~~L~l~~c~ 334 (355)
+..+++|++|++++| +++.++ -+-+++|++|+++++.
T Consensus 309 L~~L~l~~~~~L~~L~L~~N-~l~~l~-l~~l~~L~~L~l~~N~ 350 (457)
T 3bz5_A 309 ITELDLSQNPKLVYLYLNNT-ELTELD-VSHNTKLKSLSCVNAH 350 (457)
T ss_dssp CSCCCCTTCTTCCEEECTTC-CCSCCC-CTTCTTCSEEECCSSC
T ss_pred ceEechhhcccCCEEECCCC-cccccc-cccCCcCcEEECCCCC
Confidence 345566777777766 566654 2236788888877653
No 29
>1o6v_A Internalin A; bacterial infection, extracellular recognition, cell WALL attached, leucine rich repeat; 1.5A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 1o6s_A* 1o6t_A 2omz_A 2omy_A 2omw_A 2omv_A 2omt_A 2omx_A 2omu_A
Probab=99.88 E-value=4.4e-21 Score=181.00 Aligned_cols=286 Identities=16% Similarity=0.158 Sum_probs=199.5
Q ss_pred CCCCCccEEeecccccCcccccCccCCCcceEecccCccccccccccCcCCCCCCCccccccccccEEEecCCCccchh-
Q 018478 3 DTNSSLEILEIWSCRSLTYLAAVQLPRSLKRLDIQCCSNIRTLTMEEGIQSSSSSSSRRYTSYLLEELCISSCRSLTSI- 81 (355)
Q Consensus 3 ~~~~~L~~L~l~~~~~l~~l~~~~~~~~L~~L~l~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~~- 81 (355)
.++++|++|+++++ .++.++...-.++|++|++++| .+..++.. ..+++|++|+++++. +..+
T Consensus 87 ~~l~~L~~L~l~~n-~l~~~~~~~~l~~L~~L~L~~n-~l~~~~~~-------------~~l~~L~~L~l~~n~-l~~~~ 150 (466)
T 1o6v_A 87 KNLTKLVDILMNNN-QIADITPLANLTNLTGLTLFNN-QITDIDPL-------------KNLTNLNRLELSSNT-ISDIS 150 (466)
T ss_dssp TTCTTCCEEECCSS-CCCCCGGGTTCTTCCEEECCSS-CCCCCGGG-------------TTCTTCSEEEEEEEE-ECCCG
T ss_pred hccccCCEEECCCC-ccccChhhcCCCCCCEEECCCC-CCCCChHH-------------cCCCCCCEEECCCCc-cCCCh
Confidence 45788999999865 4555554333388899998885 46665542 236666666665432 1111
Q ss_pred -----------ccccccchhccccccCCCCCcccEEEEccCcchhchhhhccCCCCCcEEEeeccCCcCcccccccCCCC
Q 018478 82 -----------FSKNELSATLESLEVGNLPPSLKSLRVQGCSKLESIAETLDNSTSLETIHIFYCENMKILPSGLHNLRQ 150 (355)
Q Consensus 82 -----------~~~n~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~l~~ 150 (355)
...+...+. +....+++|+.|++++|. +..++ .+..+++|++|++++|. +...+. ++.+++
T Consensus 151 ~~~~l~~L~~L~l~~~~~~~----~~~~~l~~L~~L~l~~n~-l~~~~-~l~~l~~L~~L~l~~n~-l~~~~~-~~~l~~ 222 (466)
T 1o6v_A 151 ALSGLTSLQQLSFGNQVTDL----KPLANLTTLERLDISSNK-VSDIS-VLAKLTNLESLIATNNQ-ISDITP-LGILTN 222 (466)
T ss_dssp GGTTCTTCSEEEEEESCCCC----GGGTTCTTCCEEECCSSC-CCCCG-GGGGCTTCSEEECCSSC-CCCCGG-GGGCTT
T ss_pred hhccCCcccEeecCCcccCc----hhhccCCCCCEEECcCCc-CCCCh-hhccCCCCCEEEecCCc-cccccc-ccccCC
Confidence 000111111 223445789999999887 66654 36778999999999887 544433 677899
Q ss_pred CceEeccccCCCcCCCCCCCCCCCcceEEEccccCcCcccccccCCCCCceEEEeecCc---CCCCCCCCccEEEecCCc
Q 018478 151 LQEISIEGCGNLESFPEGGLPCAKLKEVVIRWCGRLEALPKGLHNLKSLQKLTIGKGGL---EEDGLPTNLHSLDIRGNM 227 (355)
Q Consensus 151 L~~L~l~~~~~l~~~~~~~~~~~~L~~L~l~~~~~~~~~p~~l~~~~~L~~L~l~~~~i---~~~~~~~~L~~L~l~~~~ 227 (355)
|+.|++++| .+..++ .+..+++|+.|++++|. ++..+. +..+++|++|+++.+.+ +....+++|+.|++++|.
T Consensus 223 L~~L~l~~n-~l~~~~-~l~~l~~L~~L~l~~n~-l~~~~~-~~~l~~L~~L~l~~n~l~~~~~~~~l~~L~~L~L~~n~ 298 (466)
T 1o6v_A 223 LDELSLNGN-QLKDIG-TLASLTNLTDLDLANNQ-ISNLAP-LSGLTKLTELKLGANQISNISPLAGLTALTNLELNENQ 298 (466)
T ss_dssp CCEEECCSS-CCCCCG-GGGGCTTCSEEECCSSC-CCCCGG-GTTCTTCSEEECCSSCCCCCGGGTTCTTCSEEECCSSC
T ss_pred CCEEECCCC-Ccccch-hhhcCCCCCEEECCCCc-cccchh-hhcCCCCCEEECCCCccCccccccCCCccCeEEcCCCc
Confidence 999999987 455553 45668899999999965 444443 88899999999984433 335567899999999987
Q ss_pred chhhhhhhhcccCCCCCccceeEecccCCcccccCccccccCCCCCCCCccceEEeccCCCcccccccCCCCCCccEEee
Q 018478 228 EIWKSMIEWGQGFHRFSSLRELRIEGCDDDMVSFPPEDIRMGTTLPLPTSLTSLAIFSFPNLERLSSSIVDLQNLTSLYL 307 (355)
Q Consensus 228 ~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~l~~~~~~~~~L~~L~l 307 (355)
... .+. +..+++|++|++++ +.+..+++ . ..+++|++|++++| .++.++ .+..+++|++|++
T Consensus 299 l~~-~~~-----~~~l~~L~~L~L~~--n~l~~~~~-~-------~~l~~L~~L~l~~n-~l~~~~-~l~~l~~L~~L~l 360 (466)
T 1o6v_A 299 LED-ISP-----ISNLKNLTYLTLYF--NNISDISP-V-------SSLTKLQRLFFYNN-KVSDVS-SLANLTNINWLSA 360 (466)
T ss_dssp CSC-CGG-----GGGCTTCSEEECCS--SCCSCCGG-G-------GGCTTCCEEECCSS-CCCCCG-GGTTCTTCCEEEC
T ss_pred ccC-chh-----hcCCCCCCEEECcC--CcCCCchh-h-------ccCccCCEeECCCC-ccCCch-hhccCCCCCEEeC
Confidence 443 332 66789999999998 35555544 2 36789999999984 677664 5788999999999
Q ss_pred CCCCCCcccCCCCCCCCccEEEecCCch
Q 018478 308 VGCPKLKYFPEKGLPSSLLELWIGGCPL 335 (355)
Q Consensus 308 ~~~~~l~~~~~~~~~~~L~~L~l~~c~~ 335 (355)
++| +++.++....+++|++|++.+|+.
T Consensus 361 ~~n-~l~~~~~~~~l~~L~~L~l~~n~~ 387 (466)
T 1o6v_A 361 GHN-QISDLTPLANLTRITQLGLNDQAW 387 (466)
T ss_dssp CSS-CCCBCGGGTTCTTCCEEECCCEEE
T ss_pred CCC-ccCccchhhcCCCCCEEeccCCcc
Confidence 998 677766544579999999998864
No 30
>3j0a_A TOLL-like receptor 5; membrane protein, leucine-rich repeat, asymmetric homodimer, glycoprotein, immune system; HET: NAG FUC; 26.00A {Homo sapiens}
Probab=99.88 E-value=4e-21 Score=193.84 Aligned_cols=84 Identities=17% Similarity=0.171 Sum_probs=41.2
Q ss_pred CCCCCccceeEecccCCcccccCccccccCCCCCCCCccceEEeccCCCcccc-cccCCCCCCccEEeeCCCCCCcccCC
Q 018478 240 FHRFSSLRELRIEGCDDDMVSFPPEDIRMGTTLPLPTSLTSLAIFSFPNLERL-SSSIVDLQNLTSLYLVGCPKLKYFPE 318 (355)
Q Consensus 240 ~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~l-~~~~~~~~~L~~L~l~~~~~l~~~~~ 318 (355)
+..+++|++|++++ +.+..+++..+ ..+++|++|++++ +.++.+ +..+..+++|++|++++| +++.++.
T Consensus 286 ~~~l~~L~~L~L~~--n~i~~~~~~~~------~~l~~L~~L~Ls~-N~l~~~~~~~~~~l~~L~~L~L~~N-~i~~~~~ 355 (844)
T 3j0a_A 286 FETLKDLKVLNLAY--NKINKIADEAF------YGLDNLQVLNLSY-NLLGELYSSNFYGLPKVAYIDLQKN-HIAIIQD 355 (844)
T ss_dssp SSSCCCCCEEEEES--CCCCEECTTTT------TTCSSCCEEEEES-CCCSCCCSCSCSSCTTCCEEECCSC-CCCCCCS
T ss_pred hhcCCCCCEEECCC--CcCCCCChHHh------cCCCCCCEEECCC-CCCCccCHHHhcCCCCCCEEECCCC-CCCccCh
Confidence 44555555555555 33333322211 3445556666655 334333 334455555666666555 4555544
Q ss_pred CCC--CCCccEEEecCC
Q 018478 319 KGL--PSSLLELWIGGC 333 (355)
Q Consensus 319 ~~~--~~~L~~L~l~~c 333 (355)
..+ +++|++|++++|
T Consensus 356 ~~~~~l~~L~~L~Ls~N 372 (844)
T 3j0a_A 356 QTFKFLEKLQTLDLRDN 372 (844)
T ss_dssp SCSCSCCCCCEEEEETC
T ss_pred hhhcCCCCCCEEECCCC
Confidence 332 455555555554
No 31
>4fcg_A Uncharacterized protein; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, LRR, N- and C-terminal helices; 2.00A {Xanthomonas campestris PV}
Probab=99.88 E-value=7.9e-22 Score=177.47 Aligned_cols=218 Identities=22% Similarity=0.330 Sum_probs=184.0
Q ss_pred cccccEEEecCCCccchhccccccchhccccccC-CCCCcccEEEEccCcchhchhhhccCCCCCcEEEeeccCCcCccc
Q 018478 64 SYLLEELCISSCRSLTSIFSKNELSATLESLEVG-NLPPSLKSLRVQGCSKLESIAETLDNSTSLETIHIFYCENMKILP 142 (355)
Q Consensus 64 ~~~L~~L~l~~~~~l~~~~~~n~~~~~~~~~~~~-~~~~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~ 142 (355)
..+++.|+++++ .++.+ +.. ..+++|++|++++|. +..+|..++.+++|++|++++|. +..+|
T Consensus 80 ~~~l~~L~L~~n-~l~~l-------------p~~l~~l~~L~~L~L~~n~-l~~lp~~~~~l~~L~~L~Ls~n~-l~~lp 143 (328)
T 4fcg_A 80 QPGRVALELRSV-PLPQF-------------PDQAFRLSHLQHMTIDAAG-LMELPDTMQQFAGLETLTLARNP-LRALP 143 (328)
T ss_dssp STTCCEEEEESS-CCSSC-------------CSCGGGGTTCSEEEEESSC-CCCCCSCGGGGTTCSEEEEESCC-CCCCC
T ss_pred ccceeEEEccCC-Cchhc-------------ChhhhhCCCCCEEECCCCC-ccchhHHHhccCCCCEEECCCCc-cccCc
Confidence 478999999875 45555 433 346899999999988 66889889999999999999987 66889
Q ss_pred ccccCCCCCceEeccccCCCcCCCCCCCC---------CCCcceEEEccccCcCcccccccCCCCCceEEEeecCcCC--
Q 018478 143 SGLHNLRQLQEISIEGCGNLESFPEGGLP---------CAKLKEVVIRWCGRLEALPKGLHNLKSLQKLTIGKGGLEE-- 211 (355)
Q Consensus 143 ~~~~~l~~L~~L~l~~~~~l~~~~~~~~~---------~~~L~~L~l~~~~~~~~~p~~l~~~~~L~~L~l~~~~i~~-- 211 (355)
..++.+++|+.|++++|.....+|..+.. +++|+.|++++| .++.+|..++.+++|++|+++.+.+..
T Consensus 144 ~~l~~l~~L~~L~L~~n~~~~~~p~~~~~~~~~~~~~~l~~L~~L~L~~n-~l~~lp~~l~~l~~L~~L~L~~N~l~~l~ 222 (328)
T 4fcg_A 144 ASIASLNRLRELSIRACPELTELPEPLASTDASGEHQGLVNLQSLRLEWT-GIRSLPASIANLQNLKSLKIRNSPLSALG 222 (328)
T ss_dssp GGGGGCTTCCEEEEEEETTCCCCCSCSEEEC-CCCEEESTTCCEEEEEEE-CCCCCCGGGGGCTTCCEEEEESSCCCCCC
T ss_pred HHHhcCcCCCEEECCCCCCccccChhHhhccchhhhccCCCCCEEECcCC-CcCcchHhhcCCCCCCEEEccCCCCCcCc
Confidence 89999999999999998888888877654 899999999996 566889999999999999999444432
Q ss_pred --CCCCCCccEEEecCCcchhhhhhhhcccCCCCCccceeEecccCCcccccCccccccCCCCCCCCccceEEeccCCCc
Q 018478 212 --DGLPTNLHSLDIRGNMEIWKSMIEWGQGFHRFSSLRELRIEGCDDDMVSFPPEDIRMGTTLPLPTSLTSLAIFSFPNL 289 (355)
Q Consensus 212 --~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~l 289 (355)
...+++|+.|++++|......+.. +..+++|++|++++ |.....+|..+ ..+++|++|++++|+.+
T Consensus 223 ~~l~~l~~L~~L~Ls~n~~~~~~p~~----~~~l~~L~~L~L~~-n~~~~~~p~~~-------~~l~~L~~L~L~~n~~~ 290 (328)
T 4fcg_A 223 PAIHHLPKLEELDLRGCTALRNYPPI----FGGRAPLKRLILKD-CSNLLTLPLDI-------HRLTQLEKLDLRGCVNL 290 (328)
T ss_dssp GGGGGCTTCCEEECTTCTTCCBCCCC----TTCCCCCCEEECTT-CTTCCBCCTTG-------GGCTTCCEEECTTCTTC
T ss_pred hhhccCCCCCEEECcCCcchhhhHHH----hcCCCCCCEEECCC-CCchhhcchhh-------hcCCCCCEEeCCCCCch
Confidence 345689999999999876655432 78899999999999 78888888776 57889999999999999
Q ss_pred ccccccCCCCCCccEEeeCCC
Q 018478 290 ERLSSSIVDLQNLTSLYLVGC 310 (355)
Q Consensus 290 ~~l~~~~~~~~~L~~L~l~~~ 310 (355)
..+|.++..+++|+.+.+..+
T Consensus 291 ~~iP~~l~~L~~L~~l~l~~~ 311 (328)
T 4fcg_A 291 SRLPSLIAQLPANCIILVPPH 311 (328)
T ss_dssp CCCCGGGGGSCTTCEEECCGG
T ss_pred hhccHHHhhccCceEEeCCHH
Confidence 999999999999999998764
No 32
>3o6n_A APL1; leucine-rich repeat, protein binding; HET: NAG; 1.85A {Anopheles gambiae}
Probab=99.87 E-value=4.1e-21 Score=177.06 Aligned_cols=257 Identities=16% Similarity=0.142 Sum_probs=187.6
Q ss_pred CCcceEecccCccccccccccCcCCCCCCCccccccccccEEEecCCCccchhccccccchhcccccc--CCCCCcccEE
Q 018478 29 RSLKRLDIQCCSNIRTLTMEEGIQSSSSSSSRRYTSYLLEELCISSCRSLTSIFSKNELSATLESLEV--GNLPPSLKSL 106 (355)
Q Consensus 29 ~~L~~L~l~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~~~~~n~~~~~~~~~~~--~~~~~~L~~L 106 (355)
++++.|++.++ .++.+|... +..+++|++|+++++. ++.+ +. ...+++|++|
T Consensus 45 ~~l~~l~l~~~-~l~~l~~~~-----------~~~l~~L~~L~L~~n~-i~~~-------------~~~~~~~l~~L~~L 98 (390)
T 3o6n_A 45 NNQKIVTFKNS-TMRKLPAAL-----------LDSFRQVELLNLNDLQ-IEEI-------------DTYAFAYAHTIQKL 98 (390)
T ss_dssp CCCSEEEEESC-EESEECTHH-----------HHHCCCCSEEECTTSC-CCEE-------------CTTTTTTCTTCCEE
T ss_pred CCceEEEecCC-chhhCChhH-----------hcccccCcEEECCCCc-cccc-------------ChhhccCCCCcCEE
Confidence 88999999994 588888764 5668999999999864 4554 32 2456899999
Q ss_pred EEccCcchhch-hhhccCCCCCcEEEeeccCCcCccccc-ccCCCCCceEeccccCCCcCC-CCCCCCCCCcceEEEccc
Q 018478 107 RVQGCSKLESI-AETLDNSTSLETIHIFYCENMKILPSG-LHNLRQLQEISIEGCGNLESF-PEGGLPCAKLKEVVIRWC 183 (355)
Q Consensus 107 ~l~~~~~~~~~-~~~~~~l~~L~~L~l~~~~~~~~~~~~-~~~l~~L~~L~l~~~~~l~~~-~~~~~~~~~L~~L~l~~~ 183 (355)
++++|. +..+ |..++.+++|++|++++|. +..+|.. +..+++|+.|++++| .+..+ +..+..+++|+.|++++|
T Consensus 99 ~L~~n~-l~~~~~~~~~~l~~L~~L~L~~n~-l~~l~~~~~~~l~~L~~L~L~~n-~l~~~~~~~~~~l~~L~~L~l~~n 175 (390)
T 3o6n_A 99 YMGFNA-IRYLPPHVFQNVPLLTVLVLERND-LSSLPRGIFHNTPKLTTLSMSNN-NLERIEDDTFQATTSLQNLQLSSN 175 (390)
T ss_dssp ECCSSC-CCCCCTTTTTTCTTCCEEECCSSC-CCCCCTTTTTTCTTCCEEECCSS-CCCBCCTTTTSSCTTCCEEECCSS
T ss_pred ECCCCC-CCcCCHHHhcCCCCCCEEECCCCc-cCcCCHHHhcCCCCCcEEECCCC-ccCccChhhccCCCCCCEEECCCC
Confidence 999998 6655 4567899999999999987 6777765 588999999999998 45555 456788999999999996
Q ss_pred cCcCcccccccCCCCCceEEEeecCcCCCC---------------------CCCCccEEEecCCcchhhhhhhhcccCCC
Q 018478 184 GRLEALPKGLHNLKSLQKLTIGKGGLEEDG---------------------LPTNLHSLDIRGNMEIWKSMIEWGQGFHR 242 (355)
Q Consensus 184 ~~~~~~p~~l~~~~~L~~L~l~~~~i~~~~---------------------~~~~L~~L~l~~~~~~~~~~~~~~~~~~~ 242 (355)
. ++.+ .+..+++|+.|+++.+.+.... .+++|+.|++++|.... .. . +..
T Consensus 176 ~-l~~~--~~~~l~~L~~L~l~~n~l~~~~~~~~L~~L~l~~n~l~~~~~~~~~~L~~L~l~~n~l~~-~~---~--l~~ 246 (390)
T 3o6n_A 176 R-LTHV--DLSLIPSLFHANVSYNLLSTLAIPIAVEELDASHNSINVVRGPVNVELTILKLQHNNLTD-TA---W--LLN 246 (390)
T ss_dssp C-CSBC--CGGGCTTCSEEECCSSCCSEEECCSSCSEEECCSSCCCEEECCCCSSCCEEECCSSCCCC-CG---G--GGG
T ss_pred c-CCcc--ccccccccceeecccccccccCCCCcceEEECCCCeeeeccccccccccEEECCCCCCcc-cH---H--HcC
Confidence 4 4443 3455666666666533333222 23566677777665332 22 1 667
Q ss_pred CCccceeEecccCCccccc-CccccccCCCCCCCCccceEEeccCCCcccccccCCCCCCccEEeeCCCCCCcccCCCC-
Q 018478 243 FSSLRELRIEGCDDDMVSF-PPEDIRMGTTLPLPTSLTSLAIFSFPNLERLSSSIVDLQNLTSLYLVGCPKLKYFPEKG- 320 (355)
Q Consensus 243 l~~L~~L~l~~~~~~~~~~-~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~l~~~~~~~~~L~~L~l~~~~~l~~~~~~~- 320 (355)
+++|++|++++ +.+..+ +..+ ..+++|++|++++ +.++.++..+..+++|++|++++| +++.++...
T Consensus 247 l~~L~~L~Ls~--n~l~~~~~~~~-------~~l~~L~~L~L~~-n~l~~~~~~~~~l~~L~~L~L~~n-~l~~~~~~~~ 315 (390)
T 3o6n_A 247 YPGLVEVDLSY--NELEKIMYHPF-------VKMQRLERLYISN-NRLVALNLYGQPIPTLKVLDLSHN-HLLHVERNQP 315 (390)
T ss_dssp CTTCSEEECCS--SCCCEEESGGG-------TTCSSCCEEECCS-SCCCEEECSSSCCTTCCEEECCSS-CCCCCGGGHH
T ss_pred CCCccEEECCC--CcCCCcChhHc-------cccccCCEEECCC-CcCcccCcccCCCCCCCEEECCCC-cceecCcccc
Confidence 78888888888 455544 3333 5677888999988 677888877778889999999888 787776531
Q ss_pred CCCCccEEEecCCc
Q 018478 321 LPSSLLELWIGGCP 334 (355)
Q Consensus 321 ~~~~L~~L~l~~c~ 334 (355)
.+++|++|++.+|+
T Consensus 316 ~l~~L~~L~L~~N~ 329 (390)
T 3o6n_A 316 QFDRLENLYLDHNS 329 (390)
T ss_dssp HHTTCSEEECCSSC
T ss_pred ccCcCCEEECCCCc
Confidence 26888899888876
No 33
>2z63_A TOLL-like receptor 4, variable lymphocyte recepto; TLR4, MD-2, LPS, immune system; HET: NAG FUL; 2.00A {Homo sapiens}
Probab=99.87 E-value=1.9e-21 Score=187.85 Aligned_cols=111 Identities=23% Similarity=0.245 Sum_probs=56.9
Q ss_pred CccEEeecccccCcccccCccC--CCcceEecccCccccccccccCcCCCCCCCccccccccccEEEecCCCccchh---
Q 018478 7 SLEILEIWSCRSLTYLAAVQLP--RSLKRLDIQCCSNIRTLTMEEGIQSSSSSSSRRYTSYLLEELCISSCRSLTSI--- 81 (355)
Q Consensus 7 ~L~~L~l~~~~~l~~l~~~~~~--~~L~~L~l~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~~--- 81 (355)
++++|+++++ .++.++...+. ++|++|++++| .+..++... +..+++|++|+++++. ++.+
T Consensus 29 ~l~~L~Ls~n-~l~~~~~~~~~~l~~L~~L~Ls~n-~i~~i~~~~-----------~~~l~~L~~L~L~~n~-l~~~~~~ 94 (570)
T 2z63_A 29 STKNLDLSFN-PLRHLGSYSFFSFPELQVLDLSRC-EIQTIEDGA-----------YQSLSHLSTLILTGNP-IQSLALG 94 (570)
T ss_dssp SCCEEECCSC-CCCEECTTTTTTCSSCCEEECTTC-CCCEECTTT-----------TTTCTTCCEEECTTCC-CCEECTT
T ss_pred cccEEEccCC-ccCccChhHhhCCCCceEEECCCC-cCCccCccc-----------ccCchhCCEEeCcCCc-CCccCHh
Confidence 5777777743 46666544443 77777777774 355554332 2334455555554431 1111
Q ss_pred ------------ccccccchhcccccc--CCCCCcccEEEEccCcchhc--hhhhccCCCCCcEEEeeccC
Q 018478 82 ------------FSKNELSATLESLEV--GNLPPSLKSLRVQGCSKLES--IAETLDNSTSLETIHIFYCE 136 (355)
Q Consensus 82 ------------~~~n~~~~~~~~~~~--~~~~~~L~~L~l~~~~~~~~--~~~~~~~l~~L~~L~l~~~~ 136 (355)
+++|.+... +. ...+++|++|++++|. +.. +|..++++++|++|++++|.
T Consensus 95 ~~~~l~~L~~L~L~~n~l~~l----~~~~~~~l~~L~~L~L~~n~-l~~~~lp~~~~~l~~L~~L~l~~n~ 160 (570)
T 2z63_A 95 AFSGLSSLQKLVAVETNLASL----ENFPIGHLKTLKELNVAHNL-IQSFKLPEYFSNLTNLEHLDLSSNK 160 (570)
T ss_dssp TTTTCTTCCEEECTTSCCCCS----TTCSCTTCTTCCEEECCSSC-CCCCCCCGGGGGCTTCCEEECTTSC
T ss_pred hhcCccccccccccccccccC----CCccccccccccEEecCCCc-cceecChhhhcccCCCCEEeCcCCc
Confidence 111111111 11 2334566666666665 332 45666666666666666665
No 34
>2ft3_A Biglycan; proteoglycan, dimer interface, structural protein, signaling; HET: NAG FLC; 3.40A {Bos taurus}
Probab=99.87 E-value=4.6e-21 Score=172.81 Aligned_cols=259 Identities=16% Similarity=0.163 Sum_probs=183.5
Q ss_pred CCcceEecccCccccccccccCcCCCCCCCccccccccccEEEecCCCccchhccccccchhcccccc--CCCCCcccEE
Q 018478 29 RSLKRLDIQCCSNIRTLTMEEGIQSSSSSSSRRYTSYLLEELCISSCRSLTSIFSKNELSATLESLEV--GNLPPSLKSL 106 (355)
Q Consensus 29 ~~L~~L~l~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~~~~~n~~~~~~~~~~~--~~~~~~L~~L 106 (355)
.+++.++++++ .++.+|... .++|+.|+++++. ++.+ +. ...+++|++|
T Consensus 33 c~l~~l~~~~~-~l~~ip~~~--------------~~~l~~L~l~~n~-i~~~-------------~~~~~~~l~~L~~L 83 (332)
T 2ft3_A 33 CHLRVVQCSDL-GLKAVPKEI--------------SPDTTLLDLQNND-ISEL-------------RKDDFKGLQHLYAL 83 (332)
T ss_dssp EETTEEECCSS-CCSSCCSCC--------------CTTCCEEECCSSC-CCEE-------------CTTTTTTCTTCCEE
T ss_pred ccCCEEECCCC-CccccCCCC--------------CCCCeEEECCCCc-CCcc-------------CHhHhhCCCCCcEE
Confidence 35788888874 477777765 5678888888753 4444 22 2445788888
Q ss_pred EEccCcchhch-hhhccCCCCCcEEEeeccCCcCcccccccCCCCCceEeccccCCCcCCCC-CCCCCCCcceEEEcccc
Q 018478 107 RVQGCSKLESI-AETLDNSTSLETIHIFYCENMKILPSGLHNLRQLQEISIEGCGNLESFPE-GGLPCAKLKEVVIRWCG 184 (355)
Q Consensus 107 ~l~~~~~~~~~-~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~l~~~~~-~~~~~~~L~~L~l~~~~ 184 (355)
++++|. +..+ |..+..+++|++|++++|. +..+|..+. ++|+.|++++| .+..++. .+..+++|+.|++++|.
T Consensus 84 ~L~~n~-l~~~~~~~~~~l~~L~~L~L~~n~-l~~l~~~~~--~~L~~L~l~~n-~i~~~~~~~~~~l~~L~~L~l~~n~ 158 (332)
T 2ft3_A 84 VLVNNK-ISKIHEKAFSPLRKLQKLYISKNH-LVEIPPNLP--SSLVELRIHDN-RIRKVPKGVFSGLRNMNCIEMGGNP 158 (332)
T ss_dssp ECCSSC-CCEECGGGSTTCTTCCEEECCSSC-CCSCCSSCC--TTCCEEECCSS-CCCCCCSGGGSSCSSCCEEECCSCC
T ss_pred ECCCCc-cCccCHhHhhCcCCCCEEECCCCc-CCccCcccc--ccCCEEECCCC-ccCccCHhHhCCCccCCEEECCCCc
Confidence 888887 5544 6677888888888888876 667766554 78888888886 5566654 36668888888888865
Q ss_pred Cc--CcccccccCCCCCceEEEeecCcCCC--CCCCCccEEEecCCcchhhhhhhhcccCCCCCccceeEecccCCcccc
Q 018478 185 RL--EALPKGLHNLKSLQKLTIGKGGLEED--GLPTNLHSLDIRGNMEIWKSMIEWGQGFHRFSSLRELRIEGCDDDMVS 260 (355)
Q Consensus 185 ~~--~~~p~~l~~~~~L~~L~l~~~~i~~~--~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~ 260 (355)
.. ...+..+..+ +|++|+++.+.+... ..+++|+.|++++|.... .... . +..+++|++|++++ +.+..
T Consensus 159 l~~~~~~~~~~~~l-~L~~L~l~~n~l~~l~~~~~~~L~~L~l~~n~i~~-~~~~-~--l~~l~~L~~L~L~~--N~l~~ 231 (332)
T 2ft3_A 159 LENSGFEPGAFDGL-KLNYLRISEAKLTGIPKDLPETLNELHLDHNKIQA-IELE-D--LLRYSKLYRLGLGH--NQIRM 231 (332)
T ss_dssp CBGGGSCTTSSCSC-CCSCCBCCSSBCSSCCSSSCSSCSCCBCCSSCCCC-CCTT-S--STTCTTCSCCBCCS--SCCCC
T ss_pred cccCCCCcccccCC-ccCEEECcCCCCCccCccccCCCCEEECCCCcCCc-cCHH-H--hcCCCCCCEEECCC--CcCCc
Confidence 32 1345566666 888888874443332 234788899998886443 2221 1 67888999999988 56666
Q ss_pred cCccccccCCCCCCCCccceEEeccCCCcccccccCCCCCCccEEeeCCCCCCcccCCCCC--------CCCccEEEecC
Q 018478 261 FPPEDIRMGTTLPLPTSLTSLAIFSFPNLERLSSSIVDLQNLTSLYLVGCPKLKYFPEKGL--------PSSLLELWIGG 332 (355)
Q Consensus 261 ~~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~l~~~~~~~~~L~~L~l~~~~~l~~~~~~~~--------~~~L~~L~l~~ 332 (355)
++...+ ..+++|++|++++ +.++.+|..+..+++|++|++++| +++.++...+ .++|+.|++.+
T Consensus 232 ~~~~~~------~~l~~L~~L~L~~-N~l~~lp~~l~~l~~L~~L~l~~N-~l~~~~~~~~~~~~~~~~~~~l~~L~l~~ 303 (332)
T 2ft3_A 232 IENGSL------SFLPTLRELHLDN-NKLSRVPAGLPDLKLLQVVYLHTN-NITKVGVNDFCPVGFGVKRAYYNGISLFN 303 (332)
T ss_dssp CCTTGG------GGCTTCCEEECCS-SCCCBCCTTGGGCTTCCEEECCSS-CCCBCCTTSSSCSSCCSSSCCBSEEECCS
T ss_pred CChhHh------hCCCCCCEEECCC-CcCeecChhhhcCccCCEEECCCC-CCCccChhHccccccccccccccceEeec
Confidence 665332 4667899999998 578888888888999999999988 7888876433 35688999998
Q ss_pred Cchh
Q 018478 333 CPLI 336 (355)
Q Consensus 333 c~~l 336 (355)
++..
T Consensus 304 N~~~ 307 (332)
T 2ft3_A 304 NPVP 307 (332)
T ss_dssp SSSC
T ss_pred Cccc
Confidence 8753
No 35
>1xku_A Decorin; proteoglycan, leucine-rich repeat, structural protein; HET: NAG; 2.15A {Bos taurus} SCOP: c.10.2.7 PDB: 1xec_A* 1xcd_A*
Probab=99.87 E-value=9.4e-21 Score=170.66 Aligned_cols=280 Identities=16% Similarity=0.162 Sum_probs=196.1
Q ss_pred CccEEeecccccCcccccCccCCCcceEecccCccccccccccCcCCCCCCCccccccccccEEEecCCCccchhccccc
Q 018478 7 SLEILEIWSCRSLTYLAAVQLPRSLKRLDIQCCSNIRTLTMEEGIQSSSSSSSRRYTSYLLEELCISSCRSLTSIFSKNE 86 (355)
Q Consensus 7 ~L~~L~l~~~~~l~~l~~~~~~~~L~~L~l~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~~~~~n~ 86 (355)
+++.++++++ .++.+| ..++++|++|+++++ .++.++... +..+++|++|+++++. ++.+
T Consensus 32 ~l~~l~~~~~-~l~~lp-~~~~~~l~~L~L~~n-~i~~~~~~~-----------~~~l~~L~~L~L~~n~-l~~~----- 91 (330)
T 1xku_A 32 HLRVVQCSDL-GLEKVP-KDLPPDTALLDLQNN-KITEIKDGD-----------FKNLKNLHTLILINNK-ISKI----- 91 (330)
T ss_dssp ETTEEECTTS-CCCSCC-CSCCTTCCEEECCSS-CCCCBCTTT-----------TTTCTTCCEEECCSSC-CCCB-----
T ss_pred CCeEEEecCC-CccccC-ccCCCCCeEEECCCC-cCCEeChhh-----------hccCCCCCEEECCCCc-CCee-----
Confidence 6888888754 567776 445689999999994 577776543 4668899999998763 3333
Q ss_pred cchhccccccCCCCCcccEEEEccCcchhchhhhccCCCCCcEEEeeccCCcCcccccccCCCCCceEeccccCCC--cC
Q 018478 87 LSATLESLEVGNLPPSLKSLRVQGCSKLESIAETLDNSTSLETIHIFYCENMKILPSGLHNLRQLQEISIEGCGNL--ES 164 (355)
Q Consensus 87 ~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~l--~~ 164 (355)
.+ .....+++|++|++++|. ++.+|..+. ++|++|++++|......+..+..+++|+.|++++|..- ..
T Consensus 92 ----~~--~~~~~l~~L~~L~Ls~n~-l~~l~~~~~--~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~ 162 (330)
T 1xku_A 92 ----SP--GAFAPLVKLERLYLSKNQ-LKELPEKMP--KTLQELRVHENEITKVRKSVFNGLNQMIVVELGTNPLKSSGI 162 (330)
T ss_dssp ----CT--TTTTTCTTCCEEECCSSC-CSBCCSSCC--TTCCEEECCSSCCCBBCHHHHTTCTTCCEEECCSSCCCGGGB
T ss_pred ----CH--HHhcCCCCCCEEECCCCc-CCccChhhc--ccccEEECCCCcccccCHhHhcCCccccEEECCCCcCCccCc
Confidence 00 112445789999999887 777776553 78999999988733333456788899999999887432 13
Q ss_pred CCCCCCCCCCcceEEEccccCcCcccccccCCCCCceEEEeecCcC-----CCCCCCCccEEEecCCcchhhhhhhhccc
Q 018478 165 FPEGGLPCAKLKEVVIRWCGRLEALPKGLHNLKSLQKLTIGKGGLE-----EDGLPTNLHSLDIRGNMEIWKSMIEWGQG 239 (355)
Q Consensus 165 ~~~~~~~~~~L~~L~l~~~~~~~~~p~~l~~~~~L~~L~l~~~~i~-----~~~~~~~L~~L~l~~~~~~~~~~~~~~~~ 239 (355)
.+..+..+++|+.|++++| .++.+|..+. ++|++|+++.+.+. ....+++|+.|++++|.... .....
T Consensus 163 ~~~~~~~l~~L~~L~l~~n-~l~~l~~~~~--~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~-~~~~~--- 235 (330)
T 1xku_A 163 ENGAFQGMKKLSYIRIADT-NITTIPQGLP--PSLTELHLDGNKITKVDAASLKGLNNLAKLGLSFNSISA-VDNGS--- 235 (330)
T ss_dssp CTTGGGGCTTCCEEECCSS-CCCSCCSSCC--TTCSEEECTTSCCCEECTGGGTTCTTCCEEECCSSCCCE-ECTTT---
T ss_pred ChhhccCCCCcCEEECCCC-ccccCCcccc--ccCCEEECCCCcCCccCHHHhcCCCCCCEEECCCCcCce-eChhh---
Confidence 4556677889999999885 4566666554 78999998844433 23456889999999987443 22211
Q ss_pred CCCCCccceeEecccCCcccccCccccccCCCCCCCCccceEEeccCCCccccccc-CC------CCCCccEEeeCCCCC
Q 018478 240 FHRFSSLRELRIEGCDDDMVSFPPEDIRMGTTLPLPTSLTSLAIFSFPNLERLSSS-IV------DLQNLTSLYLVGCPK 312 (355)
Q Consensus 240 ~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~l~~~-~~------~~~~L~~L~l~~~~~ 312 (355)
+..+++|++|++++ +.+..+|..+ ...++|++|++++ +.++.++.. +. ..+.++.|++.+|+
T Consensus 236 ~~~l~~L~~L~L~~--N~l~~lp~~l-------~~l~~L~~L~l~~-N~i~~~~~~~f~~~~~~~~~~~l~~l~l~~N~- 304 (330)
T 1xku_A 236 LANTPHLRELHLNN--NKLVKVPGGL-------ADHKYIQVVYLHN-NNISAIGSNDFCPPGYNTKKASYSGVSLFSNP- 304 (330)
T ss_dssp GGGSTTCCEEECCS--SCCSSCCTTT-------TTCSSCCEEECCS-SCCCCCCTTSSSCSSCCTTSCCCSEEECCSSS-
T ss_pred ccCCCCCCEEECCC--CcCccCChhh-------ccCCCcCEEECCC-CcCCccChhhcCCcccccccccccceEeecCc-
Confidence 66789999999998 5777888766 5678999999998 577777642 22 24788999999985
Q ss_pred Ccc--cCCCCC--CCCccEEEecCC
Q 018478 313 LKY--FPEKGL--PSSLLELWIGGC 333 (355)
Q Consensus 313 l~~--~~~~~~--~~~L~~L~l~~c 333 (355)
++. ++...+ +++++.++++++
T Consensus 305 ~~~~~i~~~~f~~~~~l~~l~L~~N 329 (330)
T 1xku_A 305 VQYWEIQPSTFRCVYVRAAVQLGNY 329 (330)
T ss_dssp SCGGGSCGGGGTTCCCGGGEEC---
T ss_pred ccccccCccccccccceeEEEeccc
Confidence 543 333322 688888888765
No 36
>2ft3_A Biglycan; proteoglycan, dimer interface, structural protein, signaling; HET: NAG FLC; 3.40A {Bos taurus}
Probab=99.87 E-value=7.3e-21 Score=171.53 Aligned_cols=278 Identities=18% Similarity=0.217 Sum_probs=203.3
Q ss_pred CccEEeecccccCcccccCccCCCcceEecccCccccccccccCcCCCCCCCccccccccccEEEecCCCccchhccccc
Q 018478 7 SLEILEIWSCRSLTYLAAVQLPRSLKRLDIQCCSNIRTLTMEEGIQSSSSSSSRRYTSYLLEELCISSCRSLTSIFSKNE 86 (355)
Q Consensus 7 ~L~~L~l~~~~~l~~l~~~~~~~~L~~L~l~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~~~~~n~ 86 (355)
+++.++++++ .++.+| ..++++|++|+++++ .+..++... +..+++|++|+++++. ++.+
T Consensus 34 ~l~~l~~~~~-~l~~ip-~~~~~~l~~L~l~~n-~i~~~~~~~-----------~~~l~~L~~L~L~~n~-l~~~----- 93 (332)
T 2ft3_A 34 HLRVVQCSDL-GLKAVP-KEISPDTTLLDLQNN-DISELRKDD-----------FKGLQHLYALVLVNNK-ISKI----- 93 (332)
T ss_dssp ETTEEECCSS-CCSSCC-SCCCTTCCEEECCSS-CCCEECTTT-----------TTTCTTCCEEECCSSC-CCEE-----
T ss_pred cCCEEECCCC-CccccC-CCCCCCCeEEECCCC-cCCccCHhH-----------hhCCCCCcEEECCCCc-cCcc-----
Confidence 6899999864 577777 345689999999995 577766533 5669999999999864 4433
Q ss_pred cchhccccccCCCCCcccEEEEccCcchhchhhhccCCCCCcEEEeeccCCcCccc-ccccCCCCCceEeccccCCCc--
Q 018478 87 LSATLESLEVGNLPPSLKSLRVQGCSKLESIAETLDNSTSLETIHIFYCENMKILP-SGLHNLRQLQEISIEGCGNLE-- 163 (355)
Q Consensus 87 ~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~-~~~~~l~~L~~L~l~~~~~l~-- 163 (355)
.+ .....+++|++|++++|. +..+|..+. ++|++|++++|. +..++ ..+..+++|+.|++++|. ++
T Consensus 94 ----~~--~~~~~l~~L~~L~L~~n~-l~~l~~~~~--~~L~~L~l~~n~-i~~~~~~~~~~l~~L~~L~l~~n~-l~~~ 162 (332)
T 2ft3_A 94 ----HE--KAFSPLRKLQKLYISKNH-LVEIPPNLP--SSLVELRIHDNR-IRKVPKGVFSGLRNMNCIEMGGNP-LENS 162 (332)
T ss_dssp ----CG--GGSTTCTTCCEEECCSSC-CCSCCSSCC--TTCCEEECCSSC-CCCCCSGGGSSCSSCCEEECCSCC-CBGG
T ss_pred ----CH--hHhhCcCCCCEEECCCCc-CCccCcccc--ccCCEEECCCCc-cCccCHhHhCCCccCCEEECCCCc-cccC
Confidence 00 112455899999999987 778877654 899999999988 55555 458889999999999974 43
Q ss_pred -CCCCCCCCCCCcceEEEccccCcCcccccccCCCCCceEEEeecCcCC-----CCCCCCccEEEecCCcchhhhhhhhc
Q 018478 164 -SFPEGGLPCAKLKEVVIRWCGRLEALPKGLHNLKSLQKLTIGKGGLEE-----DGLPTNLHSLDIRGNMEIWKSMIEWG 237 (355)
Q Consensus 164 -~~~~~~~~~~~L~~L~l~~~~~~~~~p~~l~~~~~L~~L~l~~~~i~~-----~~~~~~L~~L~l~~~~~~~~~~~~~~ 237 (355)
..+..+..+ +|+.|++++| .++.+|..+. ++|++|+++.+.+.. ...+++|+.|++++|.... .+...
T Consensus 163 ~~~~~~~~~l-~L~~L~l~~n-~l~~l~~~~~--~~L~~L~l~~n~i~~~~~~~l~~l~~L~~L~L~~N~l~~-~~~~~- 236 (332)
T 2ft3_A 163 GFEPGAFDGL-KLNYLRISEA-KLTGIPKDLP--ETLNELHLDHNKIQAIELEDLLRYSKLYRLGLGHNQIRM-IENGS- 236 (332)
T ss_dssp GSCTTSSCSC-CCSCCBCCSS-BCSSCCSSSC--SSCSCCBCCSSCCCCCCTTSSTTCTTCSCCBCCSSCCCC-CCTTG-
T ss_pred CCCcccccCC-ccCEEECcCC-CCCccCcccc--CCCCEEECCCCcCCccCHHHhcCCCCCCEEECCCCcCCc-CChhH-
Confidence 345556666 8999999996 4666776554 689999998444432 3456899999999987443 33222
Q ss_pred ccCCCCCccceeEecccCCcccccCccccccCCCCCCCCccceEEeccCCCccccccc-CCC------CCCccEEeeCCC
Q 018478 238 QGFHRFSSLRELRIEGCDDDMVSFPPEDIRMGTTLPLPTSLTSLAIFSFPNLERLSSS-IVD------LQNLTSLYLVGC 310 (355)
Q Consensus 238 ~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~l~~~-~~~------~~~L~~L~l~~~ 310 (355)
+..+++|++|++++ +.+..+|..+ ...++|++|++++ +.++.++.. +.. .++|+.|++.+|
T Consensus 237 --~~~l~~L~~L~L~~--N~l~~lp~~l-------~~l~~L~~L~l~~-N~l~~~~~~~~~~~~~~~~~~~l~~L~l~~N 304 (332)
T 2ft3_A 237 --LSFLPTLRELHLDN--NKLSRVPAGL-------PDLKLLQVVYLHT-NNITKVGVNDFCPVGFGVKRAYYNGISLFNN 304 (332)
T ss_dssp --GGGCTTCCEEECCS--SCCCBCCTTG-------GGCTTCCEEECCS-SCCCBCCTTSSSCSSCCSSSCCBSEEECCSS
T ss_pred --hhCCCCCCEEECCC--CcCeecChhh-------hcCccCCEEECCC-CCCCccChhHccccccccccccccceEeecC
Confidence 67889999999998 5777888766 5778999999999 678877642 222 577999999999
Q ss_pred CCCc--ccCCCCC--CCCccEEEecCCc
Q 018478 311 PKLK--YFPEKGL--PSSLLELWIGGCP 334 (355)
Q Consensus 311 ~~l~--~~~~~~~--~~~L~~L~l~~c~ 334 (355)
+ +. .++...+ +++|+.+++.++.
T Consensus 305 ~-~~~~~~~~~~~~~l~~L~~l~l~~n~ 331 (332)
T 2ft3_A 305 P-VPYWEVQPATFRCVTDRLAIQFGNYK 331 (332)
T ss_dssp S-SCGGGSCGGGGTTBCCSTTEEC----
T ss_pred c-ccccccCcccccccchhhhhhccccc
Confidence 5 55 3443333 6899999998774
No 37
>3a79_B TLR6, VLRB.59, TOLL-like receptor 6, variable lymphocyte recepto; diacyl lipopeptide, innate immunity, Leu repeat, cell membrane, cytoplasmic vesicle; HET: PXS NAG BMA NDG; 2.90A {Mus musculus}
Probab=99.87 E-value=3.4e-20 Score=179.01 Aligned_cols=82 Identities=20% Similarity=0.138 Sum_probs=47.5
Q ss_pred CCCCCccceeEecccCCcccc-cCccccccCCCCCCCCccceEEeccCCCcc-cccccCCCC-CCccEEeeCCCCCCccc
Q 018478 240 FHRFSSLRELRIEGCDDDMVS-FPPEDIRMGTTLPLPTSLTSLAIFSFPNLE-RLSSSIVDL-QNLTSLYLVGCPKLKYF 316 (355)
Q Consensus 240 ~~~l~~L~~L~l~~~~~~~~~-~~~~~~~~~~~~~~~~~L~~L~l~~~~~l~-~l~~~~~~~-~~L~~L~l~~~~~l~~~ 316 (355)
+..+++|++|++++ +.+.. ++...+ ..+++|++|+++++ .++ .++ ..+ ++|++|++++| +++.+
T Consensus 399 ~~~l~~L~~L~l~~--N~l~~~~~~~~~------~~l~~L~~L~l~~n-~l~~~~~---~~l~~~L~~L~L~~N-~l~~i 465 (562)
T 3a79_B 399 TKNMSSLETLDVSL--NSLNSHAYDRTC------AWAESILVLNLSSN-MLTGSVF---RCLPPKVKVLDLHNN-RIMSI 465 (562)
T ss_dssp TTTCTTCCEEECTT--SCCBSCCSSCCC------CCCTTCCEEECCSS-CCCGGGG---SSCCTTCSEEECCSS-CCCCC
T ss_pred hcCCCCCCEEECCC--CcCCCccChhhh------cCcccCCEEECCCC-CCCcchh---hhhcCcCCEEECCCC-cCccc
Confidence 44555555555555 23333 443321 34456666666663 332 333 233 57888888877 77777
Q ss_pred CCCCC-CCCccEEEecCCc
Q 018478 317 PEKGL-PSSLLELWIGGCP 334 (355)
Q Consensus 317 ~~~~~-~~~L~~L~l~~c~ 334 (355)
|.... +++|++|+++++.
T Consensus 466 p~~~~~l~~L~~L~L~~N~ 484 (562)
T 3a79_B 466 PKDVTHLQALQELNVASNQ 484 (562)
T ss_dssp CTTTTSSCCCSEEECCSSC
T ss_pred ChhhcCCCCCCEEECCCCC
Confidence 76433 6788888888764
No 38
>3bz5_A Internalin-J, INLJ; leucine rich repeat (LRR), cysteine ladder, asparagine ladder, virulence factor, solenoid, cell WALL; 2.70A {Listeria monocytogenes}
Probab=99.86 E-value=2.5e-20 Score=175.04 Aligned_cols=270 Identities=17% Similarity=0.189 Sum_probs=155.5
Q ss_pred CCCCCccEEeecccccCcccccCccCCCcceEecccCccccccccccCcCCCCCCCccccccccccEEEecCCCccchh-
Q 018478 3 DTNSSLEILEIWSCRSLTYLAAVQLPRSLKRLDIQCCSNIRTLTMEEGIQSSSSSSSRRYTSYLLEELCISSCRSLTSI- 81 (355)
Q Consensus 3 ~~~~~L~~L~l~~~~~l~~l~~~~~~~~L~~L~l~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~~- 81 (355)
+.+++|++|+++++ .++.++ ..-.++|++|+++++ .+..++. ..+++|++|+++++ .++.+
T Consensus 61 ~~l~~L~~L~Ls~n-~l~~~~-~~~l~~L~~L~Ls~N-~l~~~~~--------------~~l~~L~~L~L~~N-~l~~l~ 122 (457)
T 3bz5_A 61 EKLTGLTKLICTSN-NITTLD-LSQNTNLTYLACDSN-KLTNLDV--------------TPLTKLTYLNCDTN-KLTKLD 122 (457)
T ss_dssp GGCTTCSEEECCSS-CCSCCC-CTTCTTCSEEECCSS-CCSCCCC--------------TTCTTCCEEECCSS-CCSCCC
T ss_pred cccCCCCEEEccCC-cCCeEc-cccCCCCCEEECcCC-CCceeec--------------CCCCcCCEEECCCC-cCCeec
Confidence 45788999999865 566664 233388999999984 4666542 22666777777654 22322
Q ss_pred -----------ccccccchhccccccCCCCCcccEEEEccCcchhchhhhccCCCCCcEEEeeccCCcCcccccccCCCC
Q 018478 82 -----------FSKNELSATLESLEVGNLPPSLKSLRVQGCSKLESIAETLDNSTSLETIHIFYCENMKILPSGLHNLRQ 150 (355)
Q Consensus 82 -----------~~~n~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~l~~ 150 (355)
+++|.+.+. +. ..+++|+.|++++|..+..+ .++.+++|++|++++|. ++.++ +..+++
T Consensus 123 ~~~l~~L~~L~l~~N~l~~l----~l-~~l~~L~~L~l~~n~~~~~~--~~~~l~~L~~L~ls~n~-l~~l~--l~~l~~ 192 (457)
T 3bz5_A 123 VSQNPLLTYLNCARNTLTEI----DV-SHNTQLTELDCHLNKKITKL--DVTPQTQLTTLDCSFNK-ITELD--VSQNKL 192 (457)
T ss_dssp CTTCTTCCEEECTTSCCSCC----CC-TTCTTCCEEECTTCSCCCCC--CCTTCTTCCEEECCSSC-CCCCC--CTTCTT
T ss_pred CCCCCcCCEEECCCCcccee----cc-ccCCcCCEEECCCCCccccc--ccccCCcCCEEECCCCc-cceec--cccCCC
Confidence 222222221 21 22345555555555434433 24455666666666654 44443 555666
Q ss_pred CceEeccccCCCcCCCCCCCCCCCcceEEEccccCcCcccccccCCCCCceEEEeecCcCC--CCCCCCccE--------
Q 018478 151 LQEISIEGCGNLESFPEGGLPCAKLKEVVIRWCGRLEALPKGLHNLKSLQKLTIGKGGLEE--DGLPTNLHS-------- 220 (355)
Q Consensus 151 L~~L~l~~~~~l~~~~~~~~~~~~L~~L~l~~~~~~~~~p~~l~~~~~L~~L~l~~~~i~~--~~~~~~L~~-------- 220 (355)
|+.|++++| .++.++ +..+++|+.|++++| .++.+| ++.+++|+.|+++.+.+.. .+.+++|+.
T Consensus 193 L~~L~l~~N-~l~~~~--l~~l~~L~~L~Ls~N-~l~~ip--~~~l~~L~~L~l~~N~l~~~~~~~l~~L~~L~l~~n~L 266 (457)
T 3bz5_A 193 LNRLNCDTN-NITKLD--LNQNIQLTFLDCSSN-KLTEID--VTPLTQLTYFDCSVNPLTELDVSTLSKLTTLHCIQTDL 266 (457)
T ss_dssp CCEEECCSS-CCSCCC--CTTCTTCSEEECCSS-CCSCCC--CTTCTTCSEEECCSSCCSCCCCTTCTTCCEEECTTCCC
T ss_pred CCEEECcCC-cCCeec--cccCCCCCEEECcCC-cccccC--ccccCCCCEEEeeCCcCCCcCHHHCCCCCEEeccCCCC
Confidence 666666665 344442 455667777777764 344454 6667777777776333332 122334443
Q ss_pred --EEecCCcchhhhhhhhcccCCCCCccceeEecccCCcccccCccccccC-CCCCCCCccceEEeccCCCcccccccCC
Q 018478 221 --LDIRGNMEIWKSMIEWGQGFHRFSSLRELRIEGCDDDMVSFPPEDIRMG-TTLPLPTSLTSLAIFSFPNLERLSSSIV 297 (355)
Q Consensus 221 --L~l~~~~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~-~~~~~~~~L~~L~l~~~~~l~~l~~~~~ 297 (355)
|++++|...... + +..+++|+.|++++ |...+.+|....... ......++|++|++++ +.++.++ +.
T Consensus 267 ~~L~l~~n~~~~~~----~--~~~l~~L~~L~Ls~-n~~l~~l~~~~~~L~~L~l~~~~~L~~L~L~~-N~l~~l~--l~ 336 (457)
T 3bz5_A 267 LEIDLTHNTQLIYF----Q--AEGCRKIKELDVTH-NTQLYLLDCQAAGITELDLSQNPKLVYLYLNN-TELTELD--VS 336 (457)
T ss_dssp SCCCCTTCTTCCEE----E--CTTCTTCCCCCCTT-CTTCCEEECTTCCCSCCCCTTCTTCCEEECTT-CCCSCCC--CT
T ss_pred CEEECCCCccCCcc----c--ccccccCCEEECCC-CcccceeccCCCcceEechhhcccCCEEECCC-Ccccccc--cc
Confidence 333443322222 2 45678899999988 665555543210000 0113446888888888 6777774 68
Q ss_pred CCCCccEEeeCCCCCCcccC
Q 018478 298 DLQNLTSLYLVGCPKLKYFP 317 (355)
Q Consensus 298 ~~~~L~~L~l~~~~~l~~~~ 317 (355)
.+++|+.|++++| +++.++
T Consensus 337 ~l~~L~~L~l~~N-~l~~l~ 355 (457)
T 3bz5_A 337 HNTKLKSLSCVNA-HIQDFS 355 (457)
T ss_dssp TCTTCSEEECCSS-CCCBCT
T ss_pred cCCcCcEEECCCC-CCCCcc
Confidence 9999999999998 777654
No 39
>3j0a_A TOLL-like receptor 5; membrane protein, leucine-rich repeat, asymmetric homodimer, glycoprotein, immune system; HET: NAG FUC; 26.00A {Homo sapiens}
Probab=99.86 E-value=3.2e-20 Score=187.31 Aligned_cols=298 Identities=14% Similarity=0.098 Sum_probs=151.5
Q ss_pred CCccEEeecccccCcccccCccC--CCcceEecccCccccccccccCcCCCCCCCccccccccccEEEecCCCc------
Q 018478 6 SSLEILEIWSCRSLTYLAAVQLP--RSLKRLDIQCCSNIRTLTMEEGIQSSSSSSSRRYTSYLLEELCISSCRS------ 77 (355)
Q Consensus 6 ~~L~~L~l~~~~~l~~l~~~~~~--~~L~~L~l~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~------ 77 (355)
+++++|+++++ .++.+.+..+. ++|++|+++++..+..++... +..+++|+.|+++++..
T Consensus 24 ~~l~~LdLs~N-~i~~i~~~~~~~l~~L~~LdLs~n~~~~~i~~~~-----------f~~L~~L~~L~Ls~N~l~~~~p~ 91 (844)
T 3j0a_A 24 NTTERLLLSFN-YIRTVTASSFPFLEQLQLLELGSQYTPLTIDKEA-----------FRNLPNLRILDLGSSKIYFLHPD 91 (844)
T ss_dssp TTCCEEEEESC-CCCEECSSSCSSCCSCSEEEECTTCCCCEECTTT-----------TSSCTTCCEEECTTCCCCEECTT
T ss_pred CCcCEEECCCC-cCCccChhHCcccccCeEEeCCCCCCccccCHHH-----------hcCCCCCCEEECCCCcCcccCHh
Confidence 56778888754 56665544444 777777777764444443221 23344555555543321
Q ss_pred -------cchh-ccccccchhccccccCCCCCcccEEEEccCcchhch--hhhccCCCCCcEEEeeccCCcCcccccccC
Q 018478 78 -------LTSI-FSKNELSATLESLEVGNLPPSLKSLRVQGCSKLESI--AETLDNSTSLETIHIFYCENMKILPSGLHN 147 (355)
Q Consensus 78 -------l~~~-~~~n~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~--~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~ 147 (355)
++.+ +++|.+.+..+.......+++|+.|++++|. +..+ +..++++++|++|++++|......+..+..
T Consensus 92 ~~~~l~~L~~L~Ls~n~l~~~~~~~~~~~~L~~L~~L~Ls~N~-l~~~~~~~~~~~L~~L~~L~Ls~N~i~~~~~~~l~~ 170 (844)
T 3j0a_A 92 AFQGLFHLFELRLYFCGLSDAVLKDGYFRNLKALTRLDLSKNQ-IRSLYLHPSFGKLNSLKSIDFSSNQIFLVCEHELEP 170 (844)
T ss_dssp SSCSCSSCCCEECTTCCCSSCCSTTCCCSSCSSCCEEEEESCC-CCCCCCCGGGGTCSSCCEEEEESSCCCCCCSGGGHH
T ss_pred HccCCcccCEeeCcCCCCCcccccCccccccCCCCEEECCCCc-ccccccchhHhhCCCCCEEECCCCcCCeeCHHHccc
Confidence 1111 2222222211100112344677777777776 4332 245667777777777776643334444444
Q ss_pred C--CCCceEeccccCCCcCCCCCCCCCCC------cceEEEccccCcCcccccc--------------------------
Q 018478 148 L--RQLQEISIEGCGNLESFPEGGLPCAK------LKEVVIRWCGRLEALPKGL-------------------------- 193 (355)
Q Consensus 148 l--~~L~~L~l~~~~~l~~~~~~~~~~~~------L~~L~l~~~~~~~~~p~~l-------------------------- 193 (355)
+ ++|+.|++++|......|..+..+++ |+.|++++|......+..+
T Consensus 171 l~~~~L~~L~L~~n~l~~~~~~~~~~~~~~~~~~~L~~L~Ls~n~l~~~~~~~~~~~l~~~~l~~L~l~~~~~~~~~~~~ 250 (844)
T 3j0a_A 171 LQGKTLSFFSLAANSLYSRVSVDWGKCMNPFRNMVLEILDVSGNGWTVDITGNFSNAISKSQAFSLILAHHIMGAGFGFH 250 (844)
T ss_dssp HHHCSSCCCEECCSBSCCCCCCCCCSSSCTTTTCCBSEEBCSSCCSSTTTTSGGGGTSCSCCBSEEECCSSCCBCSSSCS
T ss_pred ccCCccceEECCCCccccccccchhhcCCccccCceeEEecCCCcCchhHHHHHHhhcCcccccceeccccccccccccc
Confidence 4 55666666555333333333333333 6677766653221111111
Q ss_pred ----------cC--CCCCceEEEeecCcCC-----CCCCCCccEEEecCCcchhhhhhhhcccCCCCCccceeEecccCC
Q 018478 194 ----------HN--LKSLQKLTIGKGGLEE-----DGLPTNLHSLDIRGNMEIWKSMIEWGQGFHRFSSLRELRIEGCDD 256 (355)
Q Consensus 194 ----------~~--~~~L~~L~l~~~~i~~-----~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~ 256 (355)
.. .++|++|+++.+.+.. ...+++|+.|++++|......+. . +.++++|++|++++ +
T Consensus 251 ~l~~~~~~~f~~l~~~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~i~~~~~~--~--~~~l~~L~~L~Ls~--N 324 (844)
T 3j0a_A 251 NIKDPDQNTFAGLARSSVRHLDLSHGFVFSLNSRVFETLKDLKVLNLAYNKINKIADE--A--FYGLDNLQVLNLSY--N 324 (844)
T ss_dssp SSTTGGGTTTTTTTTSCCCEEECTTCCCCEECSCCSSSCCCCCEEEEESCCCCEECTT--T--TTTCSSCCEEEEES--C
T ss_pred ccCCCChhhhhccccCCccEEECCCCcccccChhhhhcCCCCCEEECCCCcCCCCChH--H--hcCCCCCCEEECCC--C
Confidence 11 1456666665322221 23456777777776653322221 1 56677777777776 3
Q ss_pred cccccCccccccCCCCCCCCccceEEeccCCCcccccc-cCCCCCCccEEeeCCCCCCcccCCCCCCCCccEEEecCC
Q 018478 257 DMVSFPPEDIRMGTTLPLPTSLTSLAIFSFPNLERLSS-SIVDLQNLTSLYLVGCPKLKYFPEKGLPSSLLELWIGGC 333 (355)
Q Consensus 257 ~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~l~~-~~~~~~~L~~L~l~~~~~l~~~~~~~~~~~L~~L~l~~c 333 (355)
.+..+....+ ..+++|+.|++++ +.+..++. .+..+++|++|++++| .++.++. +++|++|++.++
T Consensus 325 ~l~~~~~~~~------~~l~~L~~L~L~~-N~i~~~~~~~~~~l~~L~~L~Ls~N-~l~~i~~---~~~L~~L~l~~N 391 (844)
T 3j0a_A 325 LLGELYSSNF------YGLPKVAYIDLQK-NHIAIIQDQTFKFLEKLQTLDLRDN-ALTTIHF---IPSIPDIFLSGN 391 (844)
T ss_dssp CCSCCCSCSC------SSCTTCCEEECCS-CCCCCCCSSCSCSCCCCCEEEEETC-CSCCCSS---CCSCSEEEEESC
T ss_pred CCCccCHHHh------cCCCCCCEEECCC-CCCCccChhhhcCCCCCCEEECCCC-CCCcccC---CCCcchhccCCC
Confidence 4444432221 4556677777776 35555543 3566677777777766 4555442 355555555443
No 40
>1ziw_A TOLL-like receptor 3; innate immunity, immune system; HET: NDG NAG; 2.10A {Homo sapiens} PDB: 2a0z_A* 3cig_A* 3ciy_A*
Probab=99.86 E-value=2.9e-20 Score=183.42 Aligned_cols=185 Identities=16% Similarity=0.095 Sum_probs=117.6
Q ss_pred cccccCCCCCceEeccccCCCcCCC-CCCCCCCCcceEEEccccCcCcccccccCCCCCceEEEeecCc------C-CCC
Q 018478 142 PSGLHNLRQLQEISIEGCGNLESFP-EGGLPCAKLKEVVIRWCGRLEALPKGLHNLKSLQKLTIGKGGL------E-EDG 213 (355)
Q Consensus 142 ~~~~~~l~~L~~L~l~~~~~l~~~~-~~~~~~~~L~~L~l~~~~~~~~~p~~l~~~~~L~~L~l~~~~i------~-~~~ 213 (355)
+..+..+++|+.|++++|.....+| ..+..+++|+.|++++|......+..+..+++|++|+++.+.+ + ...
T Consensus 398 ~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~p~~~~ 477 (680)
T 1ziw_A 398 SDAFSWLGHLEVLDLGLNEIGQELTGQEWRGLENIFEIYLSYNKYLQLTRNSFALVPSLQRLMLRRVALKNVDSSPSPFQ 477 (680)
T ss_dssp TTTTTTCTTCCEEECCSSCCEEECCSGGGTTCTTCCEEECCSCSEEECCTTTTTTCTTCCEEECTTSCCBCTTCSSCTTT
T ss_pred hhhhhCCCCCCEEeCCCCcCccccCcccccCcccccEEecCCCCcceeChhhhhcCcccccchhccccccccccCCcccc
Confidence 3445556666666666653222333 3444556666666666543333344566666677776663222 2 134
Q ss_pred CCCCccEEEecCCcchhhhhhhhcccCCCCCccceeEecccCCcccccCccccc--cCCCCCCCCccceEEeccCCCccc
Q 018478 214 LPTNLHSLDIRGNMEIWKSMIEWGQGFHRFSSLRELRIEGCDDDMVSFPPEDIR--MGTTLPLPTSLTSLAIFSFPNLER 291 (355)
Q Consensus 214 ~~~~L~~L~l~~~~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~--~~~~~~~~~~L~~L~l~~~~~l~~ 291 (355)
.+++|+.|++++|... ..+... +.++++|++|++++ +.+..++...+. ........++|++|++++ +.++.
T Consensus 478 ~l~~L~~L~Ls~N~l~-~i~~~~---~~~l~~L~~L~Ls~--N~l~~~~~~~~~~~~~~~~~~l~~L~~L~L~~-N~l~~ 550 (680)
T 1ziw_A 478 PLRNLTILDLSNNNIA-NINDDM---LEGLEKLEILDLQH--NNLARLWKHANPGGPIYFLKGLSHLHILNLES-NGFDE 550 (680)
T ss_dssp TCTTCCEEECCSSCCC-CCCTTT---TTTCTTCCEEECCS--SCCGGGGSTTSTTSCCCTTTTCTTCCEEECCS-SCCCC
T ss_pred cCCCCCEEECCCCCCC-cCChhh---hccccccCEEeCCC--CCccccchhhccCCcchhhcCCCCCCEEECCC-CCCCC
Confidence 5578888888887643 333322 67888899999988 455554321100 000114567899999998 67888
Q ss_pred ccc-cCCCCCCccEEeeCCCCCCcccCCCCC--CCCccEEEecCCc
Q 018478 292 LSS-SIVDLQNLTSLYLVGCPKLKYFPEKGL--PSSLLELWIGGCP 334 (355)
Q Consensus 292 l~~-~~~~~~~L~~L~l~~~~~l~~~~~~~~--~~~L~~L~l~~c~ 334 (355)
+|. .+.++++|++|++++| +++.++...+ +++|++|++.+|.
T Consensus 551 i~~~~~~~l~~L~~L~Ls~N-~l~~l~~~~~~~l~~L~~L~L~~N~ 595 (680)
T 1ziw_A 551 IPVEVFKDLFELKIIDLGLN-NLNTLPASVFNNQVSLKSLNLQKNL 595 (680)
T ss_dssp CCTTTTTTCTTCCEEECCSS-CCCCCCTTTTTTCTTCCEEECTTSC
T ss_pred CCHHHcccccCcceeECCCC-CCCcCCHhHhCCCCCCCEEECCCCc
Confidence 876 4688999999999988 8999987654 6999999999884
No 41
>2z80_A TOLL-like receptor 2, variable lymphocyte recepto; TLR2, lipopeptide, innate immunity, glycoprotein, immune RES inflammatory response; HET: NAG; 1.80A {Homo sapiens}
Probab=99.86 E-value=1.3e-20 Score=171.32 Aligned_cols=262 Identities=16% Similarity=0.180 Sum_probs=168.3
Q ss_pred cceEecccCccccccccccCcCCCCCCCccccccccccEEEecCCCccchhccccccchhcccccc--CCCCCcccEEEE
Q 018478 31 LKRLDIQCCSNIRTLTMEEGIQSSSSSSSRRYTSYLLEELCISSCRSLTSIFSKNELSATLESLEV--GNLPPSLKSLRV 108 (355)
Q Consensus 31 L~~L~l~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~~~~~n~~~~~~~~~~~--~~~~~~L~~L~l 108 (355)
....+.++ +.++.+|... .++|++|+++++ .++.+ +. ...+++|+.|++
T Consensus 33 ~~~c~~~~-~~l~~iP~~~--------------~~~L~~L~l~~n-~i~~~-------------~~~~~~~l~~L~~L~L 83 (353)
T 2z80_A 33 NGICKGSS-GSLNSIPSGL--------------TEAVKSLDLSNN-RITYI-------------SNSDLQRCVNLQALVL 83 (353)
T ss_dssp TSEEECCS-TTCSSCCTTC--------------CTTCCEEECTTS-CCCEE-------------CTTTTTTCTTCCEEEC
T ss_pred CeEeeCCC-CCcccccccc--------------cccCcEEECCCC-cCccc-------------CHHHhccCCCCCEEEC
Confidence 34455555 4566666654 456777777764 34444 32 234567777777
Q ss_pred ccCcchhch-hhhccCCCCCcEEEeeccCCcCccccc-ccCCCCCceEeccccCCCcCCCC--CCCCCCCcceEEEcccc
Q 018478 109 QGCSKLESI-AETLDNSTSLETIHIFYCENMKILPSG-LHNLRQLQEISIEGCGNLESFPE--GGLPCAKLKEVVIRWCG 184 (355)
Q Consensus 109 ~~~~~~~~~-~~~~~~l~~L~~L~l~~~~~~~~~~~~-~~~l~~L~~L~l~~~~~l~~~~~--~~~~~~~L~~L~l~~~~ 184 (355)
++|. +..+ +..+..+++|++|++++|. ++.++.. +..+++|+.|++++| .++.+|. .+..+++|+.|++++|.
T Consensus 84 ~~n~-l~~~~~~~~~~l~~L~~L~Ls~n~-l~~~~~~~~~~l~~L~~L~L~~n-~l~~l~~~~~~~~l~~L~~L~l~~n~ 160 (353)
T 2z80_A 84 TSNG-INTIEEDSFSSLGSLEHLDLSYNY-LSNLSSSWFKPLSSLTFLNLLGN-PYKTLGETSLFSHLTKLQILRVGNMD 160 (353)
T ss_dssp TTSC-CCEECTTTTTTCTTCCEEECCSSC-CSSCCHHHHTTCTTCSEEECTTC-CCSSSCSSCSCTTCTTCCEEEEEESS
T ss_pred CCCc-cCccCHhhcCCCCCCCEEECCCCc-CCcCCHhHhCCCccCCEEECCCC-CCcccCchhhhccCCCCcEEECCCCc
Confidence 7776 5544 3456777777777777766 5555543 667777777777776 5556665 55667777777777765
Q ss_pred CcCcc-cccccCCCCCceEEEeecCcC-----CCCCCCCccEEEecCCcchhhhhhhhcccCCCCCccceeEecccCCcc
Q 018478 185 RLEAL-PKGLHNLKSLQKLTIGKGGLE-----EDGLPTNLHSLDIRGNMEIWKSMIEWGQGFHRFSSLRELRIEGCDDDM 258 (355)
Q Consensus 185 ~~~~~-p~~l~~~~~L~~L~l~~~~i~-----~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~ 258 (355)
.++.+ +..+..+++|++|+++.+.+. ....+++|+.|++++|.. ...+..+ +..+++|++|++++ +.+
T Consensus 161 ~~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~l~~n~l-~~~~~~~---~~~~~~L~~L~L~~--n~l 234 (353)
T 2z80_A 161 TFTKIQRKDFAGLTFLEELEIDASDLQSYEPKSLKSIQNVSHLILHMKQH-ILLLEIF---VDVTSSVECLELRD--TDL 234 (353)
T ss_dssp SCCEECTTTTTTCCEEEEEEEEETTCCEECTTTTTTCSEEEEEEEECSCS-TTHHHHH---HHHTTTEEEEEEES--CBC
T ss_pred cccccCHHHccCCCCCCEEECCCCCcCccCHHHHhccccCCeecCCCCcc-ccchhhh---hhhcccccEEECCC--Ccc
Confidence 55554 346677777777777743332 234457888888888764 3333322 45578899999988 455
Q ss_pred cccCccccccCCCCCCCCccceEEeccCC----CcccccccCCCCCCccEEeeCCCCCCcccCCCCC--CCCccEEEecC
Q 018478 259 VSFPPEDIRMGTTLPLPTSLTSLAIFSFP----NLERLSSSIVDLQNLTSLYLVGCPKLKYFPEKGL--PSSLLELWIGG 332 (355)
Q Consensus 259 ~~~~~~~~~~~~~~~~~~~L~~L~l~~~~----~l~~l~~~~~~~~~L~~L~l~~~~~l~~~~~~~~--~~~L~~L~l~~ 332 (355)
+.++..... .......++.++++++. .+..+|.++..+++|++|++++| +++.+|...+ +++|++|++.+
T Consensus 235 ~~~~~~~l~---~~~~~~~l~~l~L~~~~l~~~~l~~l~~~l~~l~~L~~L~Ls~N-~l~~i~~~~~~~l~~L~~L~L~~ 310 (353)
T 2z80_A 235 DTFHFSELS---TGETNSLIKKFTFRNVKITDESLFQVMKLLNQISGLLELEFSRN-QLKSVPDGIFDRLTSLQKIWLHT 310 (353)
T ss_dssp TTCCCC---------CCCCCCEEEEESCBCCHHHHHHHHHHHHTCTTCCEEECCSS-CCCCCCTTTTTTCTTCCEEECCS
T ss_pred ccccccccc---cccccchhhccccccccccCcchhhhHHHHhcccCCCEEECCCC-CCCccCHHHHhcCCCCCEEEeeC
Confidence 554432210 01234566777777642 23356777788999999999998 7888887543 78999999998
Q ss_pred Cc
Q 018478 333 CP 334 (355)
Q Consensus 333 c~ 334 (355)
++
T Consensus 311 N~ 312 (353)
T 2z80_A 311 NP 312 (353)
T ss_dssp SC
T ss_pred CC
Confidence 76
No 42
>3oja_B Anopheles plasmodium-responsive leucine-rich REPE 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae}
Probab=99.86 E-value=1.1e-20 Score=183.68 Aligned_cols=257 Identities=16% Similarity=0.141 Sum_probs=188.8
Q ss_pred CCcceEecccCccccccccccCcCCCCCCCccccccccccEEEecCCCccchhccccccchhcccccc--CCCCCcccEE
Q 018478 29 RSLKRLDIQCCSNIRTLTMEEGIQSSSSSSSRRYTSYLLEELCISSCRSLTSIFSKNELSATLESLEV--GNLPPSLKSL 106 (355)
Q Consensus 29 ~~L~~L~l~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~~~~~n~~~~~~~~~~~--~~~~~~L~~L 106 (355)
++++.+++.++ .+..+|... +..+++|+.|+++++. ++.+ +. ...+++|+.|
T Consensus 51 ~~l~~l~l~~~-~l~~lp~~~-----------~~~l~~L~~L~L~~n~-l~~~-------------~~~~~~~l~~L~~L 104 (597)
T 3oja_B 51 NNQKIVTFKNS-TMRKLPAAL-----------LDSFRQVELLNLNDLQ-IEEI-------------DTYAFAYAHTIQKL 104 (597)
T ss_dssp CCCSEEEESSC-EESEECTHH-----------HHHCCCCSEEECTTSC-CCEE-------------CTTTTTTCTTCCEE
T ss_pred CCceEEEeeCC-CCCCcCHHH-----------HccCCCCcEEECCCCC-CCCC-------------ChHHhcCCCCCCEE
Confidence 78899999984 578888765 5668999999999864 5554 32 3556899999
Q ss_pred EEccCcchhchh-hhccCCCCCcEEEeeccCCcCccccc-ccCCCCCceEeccccCCCcCC-CCCCCCCCCcceEEEccc
Q 018478 107 RVQGCSKLESIA-ETLDNSTSLETIHIFYCENMKILPSG-LHNLRQLQEISIEGCGNLESF-PEGGLPCAKLKEVVIRWC 183 (355)
Q Consensus 107 ~l~~~~~~~~~~-~~~~~l~~L~~L~l~~~~~~~~~~~~-~~~l~~L~~L~l~~~~~l~~~-~~~~~~~~~L~~L~l~~~ 183 (355)
++++|. +..++ ..++.+++|++|++++|. +..+|.. ++++++|+.|++++| .+..+ |..+..+++|+.|++++|
T Consensus 105 ~L~~n~-l~~~~~~~~~~l~~L~~L~L~~n~-l~~l~~~~~~~l~~L~~L~Ls~N-~l~~~~~~~~~~l~~L~~L~L~~N 181 (597)
T 3oja_B 105 YMGFNA-IRYLPPHVFQNVPLLTVLVLERND-LSSLPRGIFHNTPKLTTLSMSNN-NLERIEDDTFQATTSLQNLQLSSN 181 (597)
T ss_dssp ECCSSC-CCCCCTTTTTTCTTCCEEECCSSC-CCCCCTTTTTTCTTCCEEECCSS-CCCBCCTTTTTTCTTCCEEECTTS
T ss_pred ECCCCc-CCCCCHHHHcCCCCCCEEEeeCCC-CCCCCHHHhccCCCCCEEEeeCC-cCCCCChhhhhcCCcCcEEECcCC
Confidence 999998 66555 557899999999999987 6677654 588999999999998 45554 456888999999999996
Q ss_pred cCcCcccccccCCCCCceEEEeecCcCCCC---------------------CCCCccEEEecCCcchhhhhhhhcccCCC
Q 018478 184 GRLEALPKGLHNLKSLQKLTIGKGGLEEDG---------------------LPTNLHSLDIRGNMEIWKSMIEWGQGFHR 242 (355)
Q Consensus 184 ~~~~~~p~~l~~~~~L~~L~l~~~~i~~~~---------------------~~~~L~~L~l~~~~~~~~~~~~~~~~~~~ 242 (355)
. ++.++ ++.+++|+.|+++.+.+.... .+++|+.|++++|.... .. . +..
T Consensus 182 ~-l~~~~--~~~l~~L~~L~l~~n~l~~l~~~~~L~~L~ls~n~l~~~~~~~~~~L~~L~L~~n~l~~-~~---~--l~~ 252 (597)
T 3oja_B 182 R-LTHVD--LSLIPSLFHANVSYNLLSTLAIPIAVEELDASHNSINVVRGPVNVELTILKLQHNNLTD-TA---W--LLN 252 (597)
T ss_dssp C-CSBCC--GGGCTTCSEEECCSSCCSEEECCTTCSEEECCSSCCCEEECSCCSCCCEEECCSSCCCC-CG---G--GGG
T ss_pred C-CCCcC--hhhhhhhhhhhcccCccccccCCchhheeeccCCcccccccccCCCCCEEECCCCCCCC-Ch---h--hcc
Confidence 4 44432 455666666666533333222 23566677776665332 21 1 667
Q ss_pred CCccceeEecccCCccccc-CccccccCCCCCCCCccceEEeccCCCcccccccCCCCCCccEEeeCCCCCCcccCCCC-
Q 018478 243 FSSLRELRIEGCDDDMVSF-PPEDIRMGTTLPLPTSLTSLAIFSFPNLERLSSSIVDLQNLTSLYLVGCPKLKYFPEKG- 320 (355)
Q Consensus 243 l~~L~~L~l~~~~~~~~~~-~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~l~~~~~~~~~L~~L~l~~~~~l~~~~~~~- 320 (355)
+++|+.|++++ +.+..+ |..+ ..+++|+.|++++ +.++.+|..+..+++|++|++++| .++.+|...
T Consensus 253 l~~L~~L~Ls~--N~l~~~~~~~~-------~~l~~L~~L~Ls~-N~l~~l~~~~~~l~~L~~L~Ls~N-~l~~i~~~~~ 321 (597)
T 3oja_B 253 YPGLVEVDLSY--NELEKIMYHPF-------VKMQRLERLYISN-NRLVALNLYGQPIPTLKVLDLSHN-HLLHVERNQP 321 (597)
T ss_dssp CTTCSEEECCS--SCCCEEESGGG-------TTCSSCCEEECTT-SCCCEEECSSSCCTTCCEEECCSS-CCCCCGGGHH
T ss_pred CCCCCEEECCC--CccCCCCHHHh-------cCccCCCEEECCC-CCCCCCCcccccCCCCcEEECCCC-CCCccCcccc
Confidence 88899999988 445444 4444 5678899999998 678888877778899999999998 687776532
Q ss_pred CCCCccEEEecCCc
Q 018478 321 LPSSLLELWIGGCP 334 (355)
Q Consensus 321 ~~~~L~~L~l~~c~ 334 (355)
.+++|++|++++|.
T Consensus 322 ~l~~L~~L~L~~N~ 335 (597)
T 3oja_B 322 QFDRLENLYLDHNS 335 (597)
T ss_dssp HHTTCSEEECCSSC
T ss_pred cCCCCCEEECCCCC
Confidence 26889999998876
No 43
>2z63_A TOLL-like receptor 4, variable lymphocyte recepto; TLR4, MD-2, LPS, immune system; HET: NAG FUL; 2.00A {Homo sapiens}
Probab=99.86 E-value=1.4e-20 Score=181.78 Aligned_cols=128 Identities=26% Similarity=0.269 Sum_probs=84.3
Q ss_pred ccCCCCCceEEEeecCc----C--CCCCCCCccEEEecCCcchhhhhhhhcccCCCCCccceeEecccCCcc-cccCccc
Q 018478 193 LHNLKSLQKLTIGKGGL----E--EDGLPTNLHSLDIRGNMEIWKSMIEWGQGFHRFSSLRELRIEGCDDDM-VSFPPED 265 (355)
Q Consensus 193 l~~~~~L~~L~l~~~~i----~--~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~-~~~~~~~ 265 (355)
+..+++|++|+++.+.+ + ....+++|+.|++++|......+. . +.++++|++|++++ |... ..+|..+
T Consensus 392 ~~~l~~L~~L~l~~n~l~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~--~--~~~l~~L~~L~l~~-n~l~~~~~p~~~ 466 (570)
T 2z63_A 392 FLGLEQLEHLDFQHSNLKQMSEFSVFLSLRNLIYLDISHTHTRVAFNG--I--FNGLSSLEVLKMAG-NSFQENFLPDIF 466 (570)
T ss_dssp EETCTTCCEEECTTSEEESCTTSCTTTTCTTCCEEECTTSCCEECCTT--T--TTTCTTCCEEECTT-CEEGGGEECSCC
T ss_pred ccccCCCCEEEccCCccccccchhhhhcCCCCCEEeCcCCcccccchh--h--hhcCCcCcEEECcC-CcCccccchhhh
Confidence 44555555555552111 1 123456777777777654332221 1 56778888888887 3322 2455544
Q ss_pred cccCCCCCCCCccceEEeccCCCcccc-cccCCCCCCccEEeeCCCCCCcccCCCCC--CCCccEEEecCCc
Q 018478 266 IRMGTTLPLPTSLTSLAIFSFPNLERL-SSSIVDLQNLTSLYLVGCPKLKYFPEKGL--PSSLLELWIGGCP 334 (355)
Q Consensus 266 ~~~~~~~~~~~~L~~L~l~~~~~l~~l-~~~~~~~~~L~~L~l~~~~~l~~~~~~~~--~~~L~~L~l~~c~ 334 (355)
..+++|++|++++| .++.+ |..+..+++|++|++++| +++.++...+ +++|++|++.+++
T Consensus 467 -------~~l~~L~~L~l~~n-~l~~~~~~~~~~l~~L~~L~l~~n-~l~~~~~~~~~~l~~L~~L~l~~N~ 529 (570)
T 2z63_A 467 -------TELRNLTFLDLSQC-QLEQLSPTAFNSLSSLQVLNMASN-QLKSVPDGIFDRLTSLQKIWLHTNP 529 (570)
T ss_dssp -------TTCTTCCEEECTTS-CCCEECTTTTTTCTTCCEEECCSS-CCSCCCTTTTTTCTTCCEEECCSSC
T ss_pred -------hcccCCCEEECCCC-ccccCChhhhhcccCCCEEeCCCC-cCCCCCHHHhhcccCCcEEEecCCc
Confidence 56788999999984 56655 667788999999999998 7888876544 6899999999875
No 44
>1ogq_A PGIP-2, polygalacturonase inhibiting protein; inhibitor; HET: NAG; 1.7A {Phaseolus vulgaris} SCOP: c.10.2.8
Probab=99.86 E-value=1.4e-21 Score=174.78 Aligned_cols=245 Identities=16% Similarity=0.115 Sum_probs=186.6
Q ss_pred ccccEEEecCCCccc--hhccccccchhccccccCCCCCcccEEEEcc-CcchhchhhhccCCCCCcEEEeeccCCcCcc
Q 018478 65 YLLEELCISSCRSLT--SIFSKNELSATLESLEVGNLPPSLKSLRVQG-CSKLESIAETLDNSTSLETIHIFYCENMKIL 141 (355)
Q Consensus 65 ~~L~~L~l~~~~~l~--~~~~~n~~~~~~~~~~~~~~~~~L~~L~l~~-~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~ 141 (355)
.+++.|+++++..-. .+ + +....+++|++|++++ |.....+|..++.+++|++|++++|.....+
T Consensus 50 ~~l~~L~L~~~~l~~~~~~----------~--~~l~~l~~L~~L~L~~~n~l~~~~p~~l~~l~~L~~L~Ls~n~l~~~~ 117 (313)
T 1ogq_A 50 YRVNNLDLSGLNLPKPYPI----------P--SSLANLPYLNFLYIGGINNLVGPIPPAIAKLTQLHYLYITHTNVSGAI 117 (313)
T ss_dssp CCEEEEEEECCCCSSCEEC----------C--GGGGGCTTCSEEEEEEETTEESCCCGGGGGCTTCSEEEEEEECCEEEC
T ss_pred ceEEEEECCCCCccCCccc----------C--hhHhCCCCCCeeeCCCCCcccccCChhHhcCCCCCEEECcCCeeCCcC
Confidence 578888888753221 22 1 1224457999999995 6534468888999999999999999855578
Q ss_pred cccccCCCCCceEeccccCCCcCCCCCCCCCCCcceEEEccccCcCcccccccCCC-CCceEEEeecCc----CC-CCCC
Q 018478 142 PSGLHNLRQLQEISIEGCGNLESFPEGGLPCAKLKEVVIRWCGRLEALPKGLHNLK-SLQKLTIGKGGL----EE-DGLP 215 (355)
Q Consensus 142 ~~~~~~l~~L~~L~l~~~~~l~~~~~~~~~~~~L~~L~l~~~~~~~~~p~~l~~~~-~L~~L~l~~~~i----~~-~~~~ 215 (355)
|..+..+++|+.|++++|.....+|..+..+++|++|++++|.....+|..+..++ +|++|+++.+.+ +. ....
T Consensus 118 p~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~p~~l~~l~~~L~~L~L~~N~l~~~~~~~~~~l 197 (313)
T 1ogq_A 118 PDFLSQIKTLVTLDFSYNALSGTLPPSISSLPNLVGITFDGNRISGAIPDSYGSFSKLFTSMTISRNRLTGKIPPTFANL 197 (313)
T ss_dssp CGGGGGCTTCCEEECCSSEEESCCCGGGGGCTTCCEEECCSSCCEEECCGGGGCCCTTCCEEECCSSEEEEECCGGGGGC
T ss_pred CHHHhCCCCCCEEeCCCCccCCcCChHHhcCCCCCeEECcCCcccCcCCHHHhhhhhcCcEEECcCCeeeccCChHHhCC
Confidence 88899999999999999844347788888899999999999765557888999888 999999983333 22 2233
Q ss_pred CCccEEEecCCcchhhhhhhhcccCCCCCccceeEecccCCcccccCccccccCCCCCCCCccceEEeccCCCcc-cccc
Q 018478 216 TNLHSLDIRGNMEIWKSMIEWGQGFHRFSSLRELRIEGCDDDMVSFPPEDIRMGTTLPLPTSLTSLAIFSFPNLE-RLSS 294 (355)
Q Consensus 216 ~~L~~L~l~~~~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~l~-~l~~ 294 (355)
+ |+.|++++|......+. . +..+++|++|++++ +.+...++.. ..+++|++|+++++ .++ .+|.
T Consensus 198 ~-L~~L~Ls~N~l~~~~~~--~--~~~l~~L~~L~L~~--N~l~~~~~~~-------~~l~~L~~L~Ls~N-~l~~~~p~ 262 (313)
T 1ogq_A 198 N-LAFVDLSRNMLEGDASV--L--FGSDKNTQKIHLAK--NSLAFDLGKV-------GLSKNLNGLDLRNN-RIYGTLPQ 262 (313)
T ss_dssp C-CSEEECCSSEEEECCGG--G--CCTTSCCSEEECCS--SEECCBGGGC-------CCCTTCCEEECCSS-CCEECCCG
T ss_pred c-ccEEECcCCcccCcCCH--H--HhcCCCCCEEECCC--CceeeecCcc-------cccCCCCEEECcCC-cccCcCCh
Confidence 3 99999999875543332 2 78899999999998 4454433334 46789999999994 555 7888
Q ss_pred cCCCCCCccEEeeCCCCCCc-ccCCCCCCCCccEEEecCCchhh
Q 018478 295 SIVDLQNLTSLYLVGCPKLK-YFPEKGLPSSLLELWIGGCPLIE 337 (355)
Q Consensus 295 ~~~~~~~L~~L~l~~~~~l~-~~~~~~~~~~L~~L~l~~c~~l~ 337 (355)
++..+++|++|++++| +++ .+|..+-+++|+++++.+++.+.
T Consensus 263 ~l~~l~~L~~L~Ls~N-~l~~~ip~~~~l~~L~~l~l~~N~~lc 305 (313)
T 1ogq_A 263 GLTQLKFLHSLNVSFN-NLCGEIPQGGNLQRFDVSAYANNKCLC 305 (313)
T ss_dssp GGGGCTTCCEEECCSS-EEEEECCCSTTGGGSCGGGTCSSSEEE
T ss_pred HHhcCcCCCEEECcCC-cccccCCCCccccccChHHhcCCCCcc
Confidence 8899999999999999 666 66665557899999999988654
No 45
>3g06_A SSPH2 (leucine-rich repeat protein); E3 ubiquitin ligase, leucine rich repeat domain, type three effector, salmonella virulence factor; 1.90A {Salmonella typhimurium}
Probab=99.85 E-value=2.3e-19 Score=173.76 Aligned_cols=253 Identities=28% Similarity=0.308 Sum_probs=196.3
Q ss_pred CccEEeecccccCcccccCccCCCcceEecccCccccccccccCcCCCCCCCccccccccccEEEecCCCccchhccccc
Q 018478 7 SLEILEIWSCRSLTYLAAVQLPRSLKRLDIQCCSNIRTLTMEEGIQSSSSSSSRRYTSYLLEELCISSCRSLTSIFSKNE 86 (355)
Q Consensus 7 ~L~~L~l~~~~~l~~l~~~~~~~~L~~L~l~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~~~~~n~ 86 (355)
+++.|++++ ..++.+|. .++++|++|+++++ .++.+|. . +++|+.|+++++ .++.+
T Consensus 41 ~l~~L~ls~-n~L~~lp~-~l~~~L~~L~L~~N-~l~~lp~-~--------------l~~L~~L~Ls~N-~l~~l----- 96 (622)
T 3g06_A 41 GNAVLNVGE-SGLTTLPD-CLPAHITTLVIPDN-NLTSLPA-L--------------PPELRTLEVSGN-QLTSL----- 96 (622)
T ss_dssp CCCEEECCS-SCCSCCCS-CCCTTCSEEEECSC-CCSCCCC-C--------------CTTCCEEEECSC-CCSCC-----
T ss_pred CCcEEEecC-CCcCccCh-hhCCCCcEEEecCC-CCCCCCC-c--------------CCCCCEEEcCCC-cCCcC-----
Confidence 588999985 56888874 45589999999995 5787777 2 788999999986 46666
Q ss_pred cchhccccccCCCCCcccEEEEccCcchhchhhhccCCCCCcEEEeeccCCcCcccccccCCCCCceEeccccCCCcCCC
Q 018478 87 LSATLESLEVGNLPPSLKSLRVQGCSKLESIAETLDNSTSLETIHIFYCENMKILPSGLHNLRQLQEISIEGCGNLESFP 166 (355)
Q Consensus 87 ~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~l~~~~ 166 (355)
+. .+++|++|++++|. +..+|. .+++|+.|++++|. +..+|.. +++|+.|++++| .+..+|
T Consensus 97 --------p~--~l~~L~~L~Ls~N~-l~~l~~---~l~~L~~L~L~~N~-l~~lp~~---l~~L~~L~Ls~N-~l~~l~ 157 (622)
T 3g06_A 97 --------PV--LPPGLLELSIFSNP-LTHLPA---LPSGLCKLWIFGNQ-LTSLPVL---PPGLQELSVSDN-QLASLP 157 (622)
T ss_dssp --------CC--CCTTCCEEEECSCC-CCCCCC---CCTTCCEEECCSSC-CSCCCCC---CTTCCEEECCSS-CCSCCC
T ss_pred --------CC--CCCCCCEEECcCCc-CCCCCC---CCCCcCEEECCCCC-CCcCCCC---CCCCCEEECcCC-cCCCcC
Confidence 65 55899999999987 777766 47899999999987 7777764 588999999987 667776
Q ss_pred CCCCCCCCcceEEEccccCcCcccccccCCCCCceEEEeecCcCCC-CCCCCccEEEecCCcchhhhhhhhcccCCCCCc
Q 018478 167 EGGLPCAKLKEVVIRWCGRLEALPKGLHNLKSLQKLTIGKGGLEED-GLPTNLHSLDIRGNMEIWKSMIEWGQGFHRFSS 245 (355)
Q Consensus 167 ~~~~~~~~L~~L~l~~~~~~~~~p~~l~~~~~L~~L~l~~~~i~~~-~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~l~~ 245 (355)
.. +.+|+.|++++| .++.+| ..+++|+.|+++.+.+... ..+++|+.|++++|... .++ ..+++
T Consensus 158 ~~---~~~L~~L~L~~N-~l~~l~---~~~~~L~~L~Ls~N~l~~l~~~~~~L~~L~L~~N~l~-~l~-------~~~~~ 222 (622)
T 3g06_A 158 AL---PSELCKLWAYNN-QLTSLP---MLPSGLQELSVSDNQLASLPTLPSELYKLWAYNNRLT-SLP-------ALPSG 222 (622)
T ss_dssp CC---CTTCCEEECCSS-CCSCCC---CCCTTCCEEECCSSCCSCCCCCCTTCCEEECCSSCCS-SCC-------CCCTT
T ss_pred Cc---cCCCCEEECCCC-CCCCCc---ccCCCCcEEECCCCCCCCCCCccchhhEEECcCCccc-ccC-------CCCCC
Confidence 53 368999999985 566676 5578899999986555543 24679999999988643 222 23478
Q ss_pred cceeEecccCCcccccCccccccCCCCCCCCccceEEeccCCCcccccccCCCCCCccEEeeCCCCCCcccCCC-CCCCC
Q 018478 246 LRELRIEGCDDDMVSFPPEDIRMGTTLPLPTSLTSLAIFSFPNLERLSSSIVDLQNLTSLYLVGCPKLKYFPEK-GLPSS 324 (355)
Q Consensus 246 L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~l~~~~~~~~~L~~L~l~~~~~l~~~~~~-~~~~~ 324 (355)
|++|++++ +.++.+|. .+++|+.|++++ +.++.+|. .+++|++|++++| +++.+|.. .-+++
T Consensus 223 L~~L~Ls~--N~L~~lp~----------~l~~L~~L~Ls~-N~L~~lp~---~~~~L~~L~Ls~N-~L~~lp~~l~~l~~ 285 (622)
T 3g06_A 223 LKELIVSG--NRLTSLPV----------LPSELKELMVSG-NRLTSLPM---LPSGLLSLSVYRN-QLTRLPESLIHLSS 285 (622)
T ss_dssp CCEEECCS--SCCSCCCC----------CCTTCCEEECCS-SCCSCCCC---CCTTCCEEECCSS-CCCSCCGGGGGSCT
T ss_pred CCEEEccC--CccCcCCC----------CCCcCcEEECCC-CCCCcCCc---ccccCcEEeCCCC-CCCcCCHHHhhccc
Confidence 99999998 57777772 457899999998 58888884 7889999999998 78888753 22789
Q ss_pred ccEEEecCCc
Q 018478 325 LLELWIGGCP 334 (355)
Q Consensus 325 L~~L~l~~c~ 334 (355)
|+.|++.+|+
T Consensus 286 L~~L~L~~N~ 295 (622)
T 3g06_A 286 ETTVNLEGNP 295 (622)
T ss_dssp TCEEECCSCC
T ss_pred cCEEEecCCC
Confidence 9999999886
No 46
>2z66_A Variable lymphocyte receptor B, TOLL-like recepto; TLR4, TOLL-like receptor, MD-2, LPS, leucine-rich repeat, glycoprotein, immune response; HET: NAG BMA FUL; 1.90A {Eptatretus burgeri}
Probab=99.84 E-value=2.7e-20 Score=165.82 Aligned_cols=57 Identities=21% Similarity=0.220 Sum_probs=24.3
Q ss_pred CcccEEEEccCcchhchhhhccCCCCCcEEEeeccCCcCccc--ccccCCCCCceEecccc
Q 018478 101 PSLKSLRVQGCSKLESIAETLDNSTSLETIHIFYCENMKILP--SGLHNLRQLQEISIEGC 159 (355)
Q Consensus 101 ~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~--~~~~~l~~L~~L~l~~~ 159 (355)
++|++|++++|. +..+|..+..+++|++|++++|. +..++ ..+..+++|+.|++++|
T Consensus 78 ~~L~~L~Ls~n~-i~~l~~~~~~l~~L~~L~l~~n~-l~~~~~~~~~~~l~~L~~L~l~~n 136 (306)
T 2z66_A 78 TSLKYLDLSFNG-VITMSSNFLGLEQLEHLDFQHSN-LKQMSEFSVFLSLRNLIYLDISHT 136 (306)
T ss_dssp SCCCEEECCSCS-EEEEEEEEETCTTCCEEECTTSE-EESSTTTTTTTTCTTCCEEECTTS
T ss_pred cccCEEECCCCc-cccChhhcCCCCCCCEEECCCCc-ccccccchhhhhccCCCEEECCCC
Confidence 344555554444 33344444444444444444443 22222 13334444444444443
No 47
>1jl5_A Outer protein YOPM; leucine-rich repeat, molecular pathogenesis, effector protein, virulence factor, toxin; 2.10A {Yersinia pestis} SCOP: c.10.2.6 PDB: 1g9u_A
Probab=99.84 E-value=6.1e-19 Score=165.44 Aligned_cols=149 Identities=27% Similarity=0.241 Sum_probs=68.9
Q ss_pred CCccEEeecccccCcccccCccCCCcceEecccCcccccccccc-CcCCC-------CCCCccccccccccEEEecCCCc
Q 018478 6 SSLEILEIWSCRSLTYLAAVQLPRSLKRLDIQCCSNIRTLTMEE-GIQSS-------SSSSSRRYTSYLLEELCISSCRS 77 (355)
Q Consensus 6 ~~L~~L~l~~~~~l~~l~~~~~~~~L~~L~l~~~~~l~~~~~~~-~~~~~-------~~~~~~~~~~~~L~~L~l~~~~~ 77 (355)
++|++|++++ +.++.++. .+++|++|+++++ .+..++... .++.+ ...+ .+..+++|++|+++++ .
T Consensus 91 ~~L~~L~l~~-n~l~~lp~--~~~~L~~L~l~~n-~l~~l~~~~~~L~~L~L~~n~l~~lp-~~~~l~~L~~L~l~~N-~ 164 (454)
T 1jl5_A 91 PHLESLVASC-NSLTELPE--LPQSLKSLLVDNN-NLKALSDLPPLLEYLGVSNNQLEKLP-ELQNSSFLKIIDVDNN-S 164 (454)
T ss_dssp TTCSEEECCS-SCCSSCCC--CCTTCCEEECCSS-CCSCCCSCCTTCCEEECCSSCCSSCC-CCTTCTTCCEEECCSS-C
T ss_pred CCCCEEEccC-CcCCcccc--ccCCCcEEECCCC-ccCcccCCCCCCCEEECcCCCCCCCc-ccCCCCCCCEEECCCC-c
Confidence 4677777764 34555542 2366666666663 344433210 00000 0011 1344555666666553 2
Q ss_pred cchhccccccchhccccccCCCCCcccEEEEccCcchhchhhhccCCCCCcEEEeeccCCcCcccccccCCCCCceEecc
Q 018478 78 LTSIFSKNELSATLESLEVGNLPPSLKSLRVQGCSKLESIAETLDNSTSLETIHIFYCENMKILPSGLHNLRQLQEISIE 157 (355)
Q Consensus 78 l~~~~~~n~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~ 157 (355)
++.+ +. .+++|+.|++++|. +..+| .++.+++|++|++++|. +..+|.. .++|+.|+++
T Consensus 165 l~~l-------------p~--~~~~L~~L~L~~n~-l~~l~-~~~~l~~L~~L~l~~N~-l~~l~~~---~~~L~~L~l~ 223 (454)
T 1jl5_A 165 LKKL-------------PD--LPPSLEFIAAGNNQ-LEELP-ELQNLPFLTAIYADNNS-LKKLPDL---PLSLESIVAG 223 (454)
T ss_dssp CSCC-------------CC--CCTTCCEEECCSSC-CSSCC-CCTTCTTCCEEECCSSC-CSSCCCC---CTTCCEEECC
T ss_pred Cccc-------------CC--CcccccEEECcCCc-CCcCc-cccCCCCCCEEECCCCc-CCcCCCC---cCcccEEECc
Confidence 2322 21 12355555555554 44444 34555555555555544 3333322 1345555555
Q ss_pred ccCCCcCCCCCCCCCCCcceEEEccc
Q 018478 158 GCGNLESFPEGGLPCAKLKEVVIRWC 183 (355)
Q Consensus 158 ~~~~l~~~~~~~~~~~~L~~L~l~~~ 183 (355)
+| .+..+|. +..+++|+.|++++|
T Consensus 224 ~n-~l~~lp~-~~~l~~L~~L~l~~N 247 (454)
T 1jl5_A 224 NN-ILEELPE-LQNLPFLTTIYADNN 247 (454)
T ss_dssp SS-CCSSCCC-CTTCTTCCEEECCSS
T ss_pred CC-cCCcccc-cCCCCCCCEEECCCC
Confidence 54 3344442 444555555555553
No 48
>1ogq_A PGIP-2, polygalacturonase inhibiting protein; inhibitor; HET: NAG; 1.7A {Phaseolus vulgaris} SCOP: c.10.2.8
Probab=99.84 E-value=1.1e-20 Score=169.02 Aligned_cols=246 Identities=17% Similarity=0.158 Sum_probs=188.9
Q ss_pred CCcceEecccCcccc---ccccccCcCCCCCCCccccccccccEEEecCCCccc-hhccccccchhcccccc-CCCCCcc
Q 018478 29 RSLKRLDIQCCSNIR---TLTMEEGIQSSSSSSSRRYTSYLLEELCISSCRSLT-SIFSKNELSATLESLEV-GNLPPSL 103 (355)
Q Consensus 29 ~~L~~L~l~~~~~l~---~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~l~-~~~~~n~~~~~~~~~~~-~~~~~~L 103 (355)
.++++|+++++. +. .+|.. +..+++|++|+++++..+. .+ +. ...+++|
T Consensus 50 ~~l~~L~L~~~~-l~~~~~~~~~------------l~~l~~L~~L~L~~~n~l~~~~-------------p~~l~~l~~L 103 (313)
T 1ogq_A 50 YRVNNLDLSGLN-LPKPYPIPSS------------LANLPYLNFLYIGGINNLVGPI-------------PPAIAKLTQL 103 (313)
T ss_dssp CCEEEEEEECCC-CSSCEECCGG------------GGGCTTCSEEEEEEETTEESCC-------------CGGGGGCTTC
T ss_pred ceEEEEECCCCC-ccCCcccChh------------HhCCCCCCeeeCCCCCcccccC-------------ChhHhcCCCC
Confidence 579999999854 55 35543 4668999999998633444 23 32 2445799
Q ss_pred cEEEEccCcchhchhhhccCCCCCcEEEeeccCCcCcccccccCCCCCceEeccccCCCcCCCCCCCCCC-CcceEEEcc
Q 018478 104 KSLRVQGCSKLESIAETLDNSTSLETIHIFYCENMKILPSGLHNLRQLQEISIEGCGNLESFPEGGLPCA-KLKEVVIRW 182 (355)
Q Consensus 104 ~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~l~~~~~~~~~~~-~L~~L~l~~ 182 (355)
++|++++|.....+|..+..+++|++|++++|.....+|..+..+++|+.|++++|.....+|..+..++ +|+.|++++
T Consensus 104 ~~L~Ls~n~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~p~~l~~l~~~L~~L~L~~ 183 (313)
T 1ogq_A 104 HYLYITHTNVSGAIPDFLSQIKTLVTLDFSYNALSGTLPPSISSLPNLVGITFDGNRISGAIPDSYGSFSKLFTSMTISR 183 (313)
T ss_dssp SEEEEEEECCEEECCGGGGGCTTCCEEECCSSEEESCCCGGGGGCTTCCEEECCSSCCEEECCGGGGCCCTTCCEEECCS
T ss_pred CEEECcCCeeCCcCCHHHhCCCCCCEEeCCCCccCCcCChHHhcCCCCCeEECcCCcccCcCCHHHhhhhhcCcEEECcC
Confidence 9999999983347888899999999999999885557888899999999999999844347888888887 999999999
Q ss_pred ccCcCcccccccCCCCCceEEEeecCcC-----CCCCCCCccEEEecCCcchhhhhhhhcccCCCCCccceeEecccCCc
Q 018478 183 CGRLEALPKGLHNLKSLQKLTIGKGGLE-----EDGLPTNLHSLDIRGNMEIWKSMIEWGQGFHRFSSLRELRIEGCDDD 257 (355)
Q Consensus 183 ~~~~~~~p~~l~~~~~L~~L~l~~~~i~-----~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~ 257 (355)
|......|..+..++ |++|+++.+.+. ....+++|+.|++++|......+. +..+++|++|++++ +.
T Consensus 184 N~l~~~~~~~~~~l~-L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~-----~~~l~~L~~L~Ls~--N~ 255 (313)
T 1ogq_A 184 NRLTGKIPPTFANLN-LAFVDLSRNMLEGDASVLFGSDKNTQKIHLAKNSLAFDLGK-----VGLSKNLNGLDLRN--NR 255 (313)
T ss_dssp SEEEEECCGGGGGCC-CSEEECCSSEEEECCGGGCCTTSCCSEEECCSSEECCBGGG-----CCCCTTCCEEECCS--SC
T ss_pred CeeeccCChHHhCCc-ccEEECcCCcccCcCCHHHhcCCCCCEEECCCCceeeecCc-----ccccCCCCEEECcC--Cc
Confidence 765557788888887 999999843332 245678999999999876543332 67889999999998 44
Q ss_pred cc-ccCccccccCCCCCCCCccceEEeccCCCcc-cccccCCCCCCccEEeeCCCCCCcccC
Q 018478 258 MV-SFPPEDIRMGTTLPLPTSLTSLAIFSFPNLE-RLSSSIVDLQNLTSLYLVGCPKLKYFP 317 (355)
Q Consensus 258 ~~-~~~~~~~~~~~~~~~~~~L~~L~l~~~~~l~-~l~~~~~~~~~L~~L~l~~~~~l~~~~ 317 (355)
+. .+|..+ ..+++|++|++++ +.++ .+|.. ..+++|+.+++.+|+.+...|
T Consensus 256 l~~~~p~~l-------~~l~~L~~L~Ls~-N~l~~~ip~~-~~l~~L~~l~l~~N~~lc~~p 308 (313)
T 1ogq_A 256 IYGTLPQGL-------TQLKFLHSLNVSF-NNLCGEIPQG-GNLQRFDVSAYANNKCLCGSP 308 (313)
T ss_dssp CEECCCGGG-------GGCTTCCEEECCS-SEEEEECCCS-TTGGGSCGGGTCSSSEEESTT
T ss_pred ccCcCChHH-------hcCcCCCEEECcC-CcccccCCCC-ccccccChHHhcCCCCccCCC
Confidence 54 677666 5778999999999 4665 66654 788999999999997565543
No 49
>4g8a_A TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, immune system; HET: NAG LP4 LP5 DAO MYR KDO; 2.40A {Homo sapiens} PDB: 3fxi_A*
Probab=99.84 E-value=2.6e-19 Score=174.89 Aligned_cols=109 Identities=20% Similarity=0.159 Sum_probs=84.9
Q ss_pred CCCCccEEEecCCcchhhhhhhhcccCCCCCccceeEecccCCcccccCccccccCCCCCCCCccceEEeccCCCccccc
Q 018478 214 LPTNLHSLDIRGNMEIWKSMIEWGQGFHRFSSLRELRIEGCDDDMVSFPPEDIRMGTTLPLPTSLTSLAIFSFPNLERLS 293 (355)
Q Consensus 214 ~~~~L~~L~l~~~~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~l~ 293 (355)
..++++.|++++|.......+.. +..+++|++|++++ +.++.+++..+ ..+++|++|++++ +.++.++
T Consensus 467 ~~~~L~~L~Ls~N~~~~~~~~~~---~~~l~~L~~L~Ls~--N~L~~l~~~~f------~~l~~L~~L~Ls~-N~l~~l~ 534 (635)
T 4g8a_A 467 GLSSLEVLKMAGNSFQENFLPDI---FTELRNLTFLDLSQ--CQLEQLSPTAF------NSLSSLQVLNMSH-NNFFSLD 534 (635)
T ss_dssp TCTTCCEEECTTCEEGGGEECSC---CTTCTTCCEEECTT--SCCCEECTTTT------TTCTTCCEEECTT-SCCCBCC
T ss_pred cchhhhhhhhhhcccccccCchh---hhhccccCEEECCC--CccCCcChHHH------cCCCCCCEEECCC-CcCCCCC
Confidence 34678888888887555443322 78899999999998 56777655432 5778999999999 6788775
Q ss_pred c-cCCCCCCccEEeeCCCCCCcccCCCCC---CCCccEEEecCCch
Q 018478 294 S-SIVDLQNLTSLYLVGCPKLKYFPEKGL---PSSLLELWIGGCPL 335 (355)
Q Consensus 294 ~-~~~~~~~L~~L~l~~~~~l~~~~~~~~---~~~L~~L~l~~c~~ 335 (355)
. .+..+++|++|++++| +++.++...+ +++|++|+++++|.
T Consensus 535 ~~~~~~l~~L~~L~Ls~N-~l~~~~~~~l~~l~~~L~~L~L~~Np~ 579 (635)
T 4g8a_A 535 TFPYKCLNSLQVLDYSLN-HIMTSKKQELQHFPSSLAFLNLTQNDF 579 (635)
T ss_dssp CGGGTTCTTCCEEECTTS-CCCBCCSSCTTCCCTTCCEEECTTCCB
T ss_pred hhHHhCCCCCCEEECCCC-cCCCCCHHHHHhhhCcCCEEEeeCCCC
Confidence 4 5788999999999998 8999877654 47899999987663
No 50
>1jl5_A Outer protein YOPM; leucine-rich repeat, molecular pathogenesis, effector protein, virulence factor, toxin; 2.10A {Yersinia pestis} SCOP: c.10.2.6 PDB: 1g9u_A
Probab=99.84 E-value=5.6e-19 Score=165.70 Aligned_cols=277 Identities=26% Similarity=0.286 Sum_probs=177.6
Q ss_pred CccEEeecccccCcccccCccCCCcceEecccCccccccccccCcCCCCCCCccccccccccEEEecCCC---------c
Q 018478 7 SLEILEIWSCRSLTYLAAVQLPRSLKRLDIQCCSNIRTLTMEEGIQSSSSSSSRRYTSYLLEELCISSCR---------S 77 (355)
Q Consensus 7 ~L~~L~l~~~~~l~~l~~~~~~~~L~~L~l~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~---------~ 77 (355)
.+++|+++++ .++.+|. ++++|++|++++ +.++.+|.. .++|++|+++++. .
T Consensus 72 ~l~~L~l~~~-~l~~lp~--~~~~L~~L~l~~-n~l~~lp~~---------------~~~L~~L~l~~n~l~~l~~~~~~ 132 (454)
T 1jl5_A 72 QAHELELNNL-GLSSLPE--LPPHLESLVASC-NSLTELPEL---------------PQSLKSLLVDNNNLKALSDLPPL 132 (454)
T ss_dssp TCSEEECTTS-CCSCCCS--CCTTCSEEECCS-SCCSSCCCC---------------CTTCCEEECCSSCCSCCCSCCTT
T ss_pred CCCEEEecCC-ccccCCC--CcCCCCEEEccC-CcCCccccc---------------cCCCcEEECCCCccCcccCCCCC
Confidence 3689999976 5777664 568999999998 557777643 3456666655431 1
Q ss_pred cchh-ccccccchhccccccCCCCCcccEEEEccCcchhchhhhccCCCCCcEEEeeccCCcCcccccccCCCCCceEec
Q 018478 78 LTSI-FSKNELSATLESLEVGNLPPSLKSLRVQGCSKLESIAETLDNSTSLETIHIFYCENMKILPSGLHNLRQLQEISI 156 (355)
Q Consensus 78 l~~~-~~~n~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l 156 (355)
++.+ +++|.+.+ + +....+++|++|++++|. +..+|.. .++|++|++++|. ++.+| .++.+++|+.|++
T Consensus 133 L~~L~L~~n~l~~-l---p~~~~l~~L~~L~l~~N~-l~~lp~~---~~~L~~L~L~~n~-l~~l~-~~~~l~~L~~L~l 202 (454)
T 1jl5_A 133 LEYLGVSNNQLEK-L---PELQNSSFLKIIDVDNNS-LKKLPDL---PPSLEFIAAGNNQ-LEELP-ELQNLPFLTAIYA 202 (454)
T ss_dssp CCEEECCSSCCSS-C---CCCTTCTTCCEEECCSSC-CSCCCCC---CTTCCEEECCSSC-CSSCC-CCTTCTTCCEEEC
T ss_pred CCEEECcCCCCCC-C---cccCCCCCCCEEECCCCc-CcccCCC---cccccEEECcCCc-CCcCc-cccCCCCCCEEEC
Confidence 1122 33333332 1 433445678888888776 6556543 3578888888776 55566 5778888888888
Q ss_pred cccCCCcCCCCCCCCCCCcceEEEccccCcCcccccccCCCCCceEEEeecCcCCC-CCCCCccEEEecCCcchhhhhhh
Q 018478 157 EGCGNLESFPEGGLPCAKLKEVVIRWCGRLEALPKGLHNLKSLQKLTIGKGGLEED-GLPTNLHSLDIRGNMEIWKSMIE 235 (355)
Q Consensus 157 ~~~~~l~~~~~~~~~~~~L~~L~l~~~~~~~~~p~~l~~~~~L~~L~l~~~~i~~~-~~~~~L~~L~l~~~~~~~~~~~~ 235 (355)
++| .+..+|... ++|+.|++++| .++.+| .++.+++|++|+++.+.+... ..+++|+.|++++|.... ++.
T Consensus 203 ~~N-~l~~l~~~~---~~L~~L~l~~n-~l~~lp-~~~~l~~L~~L~l~~N~l~~l~~~~~~L~~L~l~~N~l~~-l~~- 274 (454)
T 1jl5_A 203 DNN-SLKKLPDLP---LSLESIVAGNN-ILEELP-ELQNLPFLTTIYADNNLLKTLPDLPPSLEALNVRDNYLTD-LPE- 274 (454)
T ss_dssp CSS-CCSSCCCCC---TTCCEEECCSS-CCSSCC-CCTTCTTCCEEECCSSCCSSCCSCCTTCCEEECCSSCCSC-CCC-
T ss_pred CCC-cCCcCCCCc---CcccEEECcCC-cCCccc-ccCCCCCCCEEECCCCcCCcccccccccCEEECCCCcccc-cCc-
Confidence 886 556665432 47888888886 455777 488889999999985444432 235788888888876332 221
Q ss_pred hcccCCCCCccceeEecccCCcccccCc---ccccc-------CCCCCCCCccceEEeccCCCcccccccCCCCCCccEE
Q 018478 236 WGQGFHRFSSLRELRIEGCDDDMVSFPP---EDIRM-------GTTLPLPTSLTSLAIFSFPNLERLSSSIVDLQNLTSL 305 (355)
Q Consensus 236 ~~~~~~~l~~L~~L~l~~~~~~~~~~~~---~~~~~-------~~~~~~~~~L~~L~l~~~~~l~~l~~~~~~~~~L~~L 305 (355)
..++|++|++++ +.++.++. ....+ ......+++|++|++++ +.++.+|. .+++|++|
T Consensus 275 ------~~~~L~~L~ls~--N~l~~l~~~~~~L~~L~l~~N~l~~i~~~~~~L~~L~Ls~-N~l~~lp~---~~~~L~~L 342 (454)
T 1jl5_A 275 ------LPQSLTFLDVSE--NIFSGLSELPPNLYYLNASSNEIRSLCDLPPSLEELNVSN-NKLIELPA---LPPRLERL 342 (454)
T ss_dssp ------CCTTCCEEECCS--SCCSEESCCCTTCCEEECCSSCCSEECCCCTTCCEEECCS-SCCSCCCC---CCTTCCEE
T ss_pred ------ccCcCCEEECcC--CccCcccCcCCcCCEEECcCCcCCcccCCcCcCCEEECCC-Cccccccc---cCCcCCEE
Confidence 125566666665 23332221 00000 00002335788888887 56777773 46889999
Q ss_pred eeCCCCCCcccCCCCCCCCccEEEecCCch
Q 018478 306 YLVGCPKLKYFPEKGLPSSLLELWIGGCPL 335 (355)
Q Consensus 306 ~l~~~~~l~~~~~~~~~~~L~~L~l~~c~~ 335 (355)
++++| +++.+|. .+++|++|++++|+-
T Consensus 343 ~L~~N-~l~~lp~--~l~~L~~L~L~~N~l 369 (454)
T 1jl5_A 343 IASFN-HLAEVPE--LPQNLKQLHVEYNPL 369 (454)
T ss_dssp ECCSS-CCSCCCC--CCTTCCEEECCSSCC
T ss_pred ECCCC-ccccccc--hhhhccEEECCCCCC
Confidence 99988 7888877 678999999988753
No 51
>2z66_A Variable lymphocyte receptor B, TOLL-like recepto; TLR4, TOLL-like receptor, MD-2, LPS, leucine-rich repeat, glycoprotein, immune response; HET: NAG BMA FUL; 1.90A {Eptatretus burgeri}
Probab=99.83 E-value=1.4e-19 Score=161.12 Aligned_cols=238 Identities=19% Similarity=0.174 Sum_probs=148.8
Q ss_pred eEecccCccccccccccCcCCCCCCCccccccccccEEEecCCCccchhccccccchhccccccC--CCCCcccEEEEcc
Q 018478 33 RLDIQCCSNIRTLTMEEGIQSSSSSSSRRYTSYLLEELCISSCRSLTSIFSKNELSATLESLEVG--NLPPSLKSLRVQG 110 (355)
Q Consensus 33 ~L~l~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~~~~~n~~~~~~~~~~~~--~~~~~L~~L~l~~ 110 (355)
.++.++ ..++.+|... .++|++|+++++ .++.+ +.. ..+++|+.|++++
T Consensus 11 ~l~c~~-~~l~~ip~~~--------------~~~l~~L~L~~n-~l~~i-------------~~~~~~~l~~L~~L~L~~ 61 (306)
T 2z66_A 11 EIRCNS-KGLTSVPTGI--------------PSSATRLELESN-KLQSL-------------PHGVFDKLTQLTKLSLSS 61 (306)
T ss_dssp EEECCS-SCCSSCCSCC--------------CTTCCEEECCSS-CCCCC-------------CTTTTTTCTTCSEEECCS
T ss_pred EEEcCC-CCcccCCCCC--------------CCCCCEEECCCC-ccCcc-------------CHhHhhccccCCEEECCC
Confidence 455555 3466666654 556777777765 34444 432 3457888888888
Q ss_pred Ccchhch---hhhccCCCCCcEEEeeccCCcCcccccccCCCCCceEeccccCCCcCCCC--CCCCCCCcceEEEccccC
Q 018478 111 CSKLESI---AETLDNSTSLETIHIFYCENMKILPSGLHNLRQLQEISIEGCGNLESFPE--GGLPCAKLKEVVIRWCGR 185 (355)
Q Consensus 111 ~~~~~~~---~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~l~~~~~--~~~~~~~L~~L~l~~~~~ 185 (355)
|. +..+ +..+..+++|++|++++|. +..++..+..+++|+.|++++| .+..++. .+..+++|+.|++++|..
T Consensus 62 n~-l~~~~~~~~~~~~~~~L~~L~Ls~n~-i~~l~~~~~~l~~L~~L~l~~n-~l~~~~~~~~~~~l~~L~~L~l~~n~l 138 (306)
T 2z66_A 62 NG-LSFKGCCSQSDFGTTSLKYLDLSFNG-VITMSSNFLGLEQLEHLDFQHS-NLKQMSEFSVFLSLRNLIYLDISHTHT 138 (306)
T ss_dssp SC-CCEEEEEEHHHHSCSCCCEEECCSCS-EEEEEEEEETCTTCCEEECTTS-EEESSTTTTTTTTCTTCCEEECTTSCC
T ss_pred Cc-cCcccCcccccccccccCEEECCCCc-cccChhhcCCCCCCCEEECCCC-cccccccchhhhhccCCCEEECCCCcC
Confidence 76 4433 4556678999999999988 7778888999999999999997 5666653 677899999999999765
Q ss_pred cCcccccccCCCCCceEEEeecCcCCCCCCCCccEEEecCCcchhhhhhhhcccCCCCCccceeEecccCCcccccCccc
Q 018478 186 LEALPKGLHNLKSLQKLTIGKGGLEEDGLPTNLHSLDIRGNMEIWKSMIEWGQGFHRFSSLRELRIEGCDDDMVSFPPED 265 (355)
Q Consensus 186 ~~~~p~~l~~~~~L~~L~l~~~~i~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~ 265 (355)
....+..+..+++|++|+++ +|.......+. . +..+++|++|++++ +.+..++...
T Consensus 139 ~~~~~~~~~~l~~L~~L~l~-------------------~n~l~~~~~~~-~--~~~l~~L~~L~Ls~--n~l~~~~~~~ 194 (306)
T 2z66_A 139 RVAFNGIFNGLSSLEVLKMA-------------------GNSFQENFLPD-I--FTELRNLTFLDLSQ--CQLEQLSPTA 194 (306)
T ss_dssp EECSTTTTTTCTTCCEEECT-------------------TCEEGGGEECS-C--CTTCTTCCEEECTT--SCCCEECTTT
T ss_pred CccchhhcccCcCCCEEECC-------------------CCccccccchh-H--HhhCcCCCEEECCC--CCcCCcCHHH
Confidence 44555667777766666664 43322211111 1 45556666666665 3344442221
Q ss_pred cccCCCCCCCCccceEEeccCCCcccccc-cCCCCCCccEEeeCCCCCCcccCCCCC---CCCccEEEecCCc
Q 018478 266 IRMGTTLPLPTSLTSLAIFSFPNLERLSS-SIVDLQNLTSLYLVGCPKLKYFPEKGL---PSSLLELWIGGCP 334 (355)
Q Consensus 266 ~~~~~~~~~~~~L~~L~l~~~~~l~~l~~-~~~~~~~L~~L~l~~~~~l~~~~~~~~---~~~L~~L~l~~c~ 334 (355)
+ ...++|++|++++ +.++.++. .+..+++|++|++++| +++..+...+ +++|++|++.+++
T Consensus 195 ~------~~l~~L~~L~L~~-N~l~~~~~~~~~~l~~L~~L~L~~N-~l~~~~~~~~~~~~~~L~~L~L~~N~ 259 (306)
T 2z66_A 195 F------NSLSSLQVLNMSH-NNFFSLDTFPYKCLNSLQVLDYSLN-HIMTSKKQELQHFPSSLAFLNLTQND 259 (306)
T ss_dssp T------TTCTTCCEEECTT-SCCSBCCSGGGTTCTTCCEEECTTS-CCCBCSSSSCCCCCTTCCEEECTTCC
T ss_pred h------cCCCCCCEEECCC-CccCccChhhccCcccCCEeECCCC-CCcccCHHHHHhhhccCCEEEccCCC
Confidence 1 3445666666666 34444433 3455666666666666 4555443322 2466666666654
No 52
>3zyj_A Leucine-rich repeat-containing protein 4C; cell adhesion, synapse; HET: NAG BMA MAN; 3.25A {Homo sapiens}
Probab=99.83 E-value=5.5e-19 Score=165.39 Aligned_cols=196 Identities=18% Similarity=0.254 Sum_probs=108.7
Q ss_pred CCcccEEEEccCcchhchh-hhccCCCCCcEEEeeccCCcCcccc-cccCCCCCceEeccccCCCcCCCC-CCCCCCCcc
Q 018478 100 PPSLKSLRVQGCSKLESIA-ETLDNSTSLETIHIFYCENMKILPS-GLHNLRQLQEISIEGCGNLESFPE-GGLPCAKLK 176 (355)
Q Consensus 100 ~~~L~~L~l~~~~~~~~~~-~~~~~l~~L~~L~l~~~~~~~~~~~-~~~~l~~L~~L~l~~~~~l~~~~~-~~~~~~~L~ 176 (355)
+++|+.|++++|. +..++ ..+..+++|++|++++|. ++.++. .+..+++|+.|++++| .+..++. .+..+++|+
T Consensus 87 l~~L~~L~Ls~n~-i~~i~~~~~~~l~~L~~L~L~~n~-l~~~~~~~~~~l~~L~~L~L~~N-~i~~~~~~~~~~l~~L~ 163 (440)
T 3zyj_A 87 LRHLEILQLSRNH-IRTIEIGAFNGLANLNTLELFDNR-LTTIPNGAFVYLSKLKELWLRNN-PIESIPSYAFNRIPSLR 163 (440)
T ss_dssp CSSCCEEECCSSC-CCEECGGGGTTCSSCCEEECCSSC-CSSCCTTTSCSCSSCCEEECCSC-CCCEECTTTTTTCTTCC
T ss_pred CCCCCEEECCCCc-CCccChhhccCCccCCEEECCCCc-CCeeCHhHhhccccCceeeCCCC-cccccCHHHhhhCcccC
Confidence 4566666666665 44333 445566666666666655 444432 4556666666666665 3444442 445566666
Q ss_pred eEEEccccCcCcccc-cccCCCCCceEEEe---ecCcCCCCCCCCccEEEecCCcchhhhhhhhcccCCCCCccceeEec
Q 018478 177 EVVIRWCGRLEALPK-GLHNLKSLQKLTIG---KGGLEEDGLPTNLHSLDIRGNMEIWKSMIEWGQGFHRFSSLRELRIE 252 (355)
Q Consensus 177 ~L~l~~~~~~~~~p~-~l~~~~~L~~L~l~---~~~i~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~l~~L~~L~l~ 252 (355)
.|++++|+.+..++. .+..+++|++|+++ ...++....+++|+.|++++|.... .... . +.++++|++|+++
T Consensus 164 ~L~l~~~~~l~~i~~~~~~~l~~L~~L~L~~n~l~~~~~~~~l~~L~~L~Ls~N~l~~-~~~~-~--~~~l~~L~~L~L~ 239 (440)
T 3zyj_A 164 RLDLGELKRLSYISEGAFEGLSNLRYLNLAMCNLREIPNLTPLIKLDELDLSGNHLSA-IRPG-S--FQGLMHLQKLWMI 239 (440)
T ss_dssp EEECCCCTTCCEECTTTTTTCSSCCEEECTTSCCSSCCCCTTCSSCCEEECTTSCCCE-ECTT-T--TTTCTTCCEEECT
T ss_pred EeCCCCCCCcceeCcchhhcccccCeecCCCCcCccccccCCCcccCEEECCCCccCc-cChh-h--hccCccCCEEECC
Confidence 666666555555543 45566666666665 2333444455566666666664322 2211 1 5566666666666
Q ss_pred ccCCcccccCccccccCCCCCCCCccceEEeccCCCccccccc-CCCCCCccEEeeCCCC
Q 018478 253 GCDDDMVSFPPEDIRMGTTLPLPTSLTSLAIFSFPNLERLSSS-IVDLQNLTSLYLVGCP 311 (355)
Q Consensus 253 ~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~l~~~-~~~~~~L~~L~l~~~~ 311 (355)
+ +.+..++...+ ..+++|++|++++ +.++.++.. +..+++|+.|++++|+
T Consensus 240 ~--n~l~~~~~~~~------~~l~~L~~L~L~~-N~l~~~~~~~~~~l~~L~~L~L~~Np 290 (440)
T 3zyj_A 240 Q--SQIQVIERNAF------DNLQSLVEINLAH-NNLTLLPHDLFTPLHHLERIHLHHNP 290 (440)
T ss_dssp T--CCCCEECTTSS------TTCTTCCEEECTT-SCCCCCCTTTTSSCTTCCEEECCSSC
T ss_pred C--CceeEEChhhh------cCCCCCCEEECCC-CCCCccChhHhccccCCCEEEcCCCC
Confidence 6 44444443321 3455666666666 455555432 3556666666666653
No 53
>3zyi_A Leucine-rich repeat-containing protein 4; cell adhesion, LRRC4 complex, synapse; HET: NAG; 2.60A {Homo sapiens} PDB: 3zyo_A* 3zyn_A* 2dl9_A
Probab=99.82 E-value=8.1e-19 Score=164.82 Aligned_cols=194 Identities=22% Similarity=0.263 Sum_probs=81.9
Q ss_pred CcccEEEEccCcchhchh-hhccCCCCCcEEEeeccCCcCccc-ccccCCCCCceEeccccCCCcCCCC-CCCCCCCcce
Q 018478 101 PSLKSLRVQGCSKLESIA-ETLDNSTSLETIHIFYCENMKILP-SGLHNLRQLQEISIEGCGNLESFPE-GGLPCAKLKE 177 (355)
Q Consensus 101 ~~L~~L~l~~~~~~~~~~-~~~~~l~~L~~L~l~~~~~~~~~~-~~~~~l~~L~~L~l~~~~~l~~~~~-~~~~~~~L~~ 177 (355)
++|+.|++++|. +..++ ..+.++++|++|++++|. +..++ ..+..+++|+.|++++| .+..++. .+..+++|+.
T Consensus 99 ~~L~~L~Ls~n~-i~~~~~~~~~~l~~L~~L~L~~n~-l~~~~~~~~~~l~~L~~L~L~~N-~l~~~~~~~~~~l~~L~~ 175 (452)
T 3zyi_A 99 HHLEVLQLGRNS-IRQIEVGAFNGLASLNTLELFDNW-LTVIPSGAFEYLSKLRELWLRNN-PIESIPSYAFNRVPSLMR 175 (452)
T ss_dssp TTCCEEECCSSC-CCEECTTTTTTCTTCCEEECCSSC-CSBCCTTTSSSCTTCCEEECCSC-CCCEECTTTTTTCTTCCE
T ss_pred CCCCEEECCCCc-cCCcChhhccCcccCCEEECCCCc-CCccChhhhcccCCCCEEECCCC-CcceeCHhHHhcCCcccE
Confidence 445555555444 33222 334444555555555444 33332 22444455555555544 2333332 3334445555
Q ss_pred EEEccccCcCcccc-cccCCCCCceEEEe---ecCcCCCCCCCCccEEEecCCcchhhhhhhhcccCCCCCccceeEecc
Q 018478 178 VVIRWCGRLEALPK-GLHNLKSLQKLTIG---KGGLEEDGLPTNLHSLDIRGNMEIWKSMIEWGQGFHRFSSLRELRIEG 253 (355)
Q Consensus 178 L~l~~~~~~~~~p~-~l~~~~~L~~L~l~---~~~i~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~l~~L~~L~l~~ 253 (355)
|++++|+.++.++. .+..+++|+.|+++ ...++....+++|+.|++++|......+. . +.++++|++|++++
T Consensus 176 L~l~~~~~l~~i~~~~~~~l~~L~~L~L~~n~l~~~~~~~~l~~L~~L~Ls~N~l~~~~~~-~---~~~l~~L~~L~L~~ 251 (452)
T 3zyi_A 176 LDLGELKKLEYISEGAFEGLFNLKYLNLGMCNIKDMPNLTPLVGLEELEMSGNHFPEIRPG-S---FHGLSSLKKLWVMN 251 (452)
T ss_dssp EECCCCTTCCEECTTTTTTCTTCCEEECTTSCCSSCCCCTTCTTCCEEECTTSCCSEECGG-G---GTTCTTCCEEECTT
T ss_pred EeCCCCCCccccChhhccCCCCCCEEECCCCcccccccccccccccEEECcCCcCcccCcc-c---ccCccCCCEEEeCC
Confidence 55554444444432 34444444444444 22222233344455555555442221111 1 44455555555554
Q ss_pred cCCcccccCccccccCCCCCCCCccceEEeccCCCccccccc-CCCCCCccEEeeCCC
Q 018478 254 CDDDMVSFPPEDIRMGTTLPLPTSLTSLAIFSFPNLERLSSS-IVDLQNLTSLYLVGC 310 (355)
Q Consensus 254 ~~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~l~~~-~~~~~~L~~L~l~~~ 310 (355)
+.+..++...+ ..+++|+.|++++ +.++.++.. +..+++|++|++++|
T Consensus 252 --n~l~~~~~~~~------~~l~~L~~L~L~~-N~l~~~~~~~~~~l~~L~~L~L~~N 300 (452)
T 3zyi_A 252 --SQVSLIERNAF------DGLASLVELNLAH-NNLSSLPHDLFTPLRYLVELHLHHN 300 (452)
T ss_dssp --SCCCEECTTTT------TTCTTCCEEECCS-SCCSCCCTTSSTTCTTCCEEECCSS
T ss_pred --CcCceECHHHh------cCCCCCCEEECCC-CcCCccChHHhccccCCCEEEccCC
Confidence 23333322211 2334555555554 344444322 244455555555444
No 54
>3zyi_A Leucine-rich repeat-containing protein 4; cell adhesion, LRRC4 complex, synapse; HET: NAG; 2.60A {Homo sapiens} PDB: 3zyo_A* 3zyn_A* 2dl9_A
Probab=99.81 E-value=1.2e-18 Score=163.60 Aligned_cols=220 Identities=20% Similarity=0.248 Sum_probs=174.8
Q ss_pred ccCCCCCcccEEEEccCcchhch-hhhccCCCCCcEEEeeccCCcCcccccccCCCCCceEeccccCCCcCCCC-CCCCC
Q 018478 95 EVGNLPPSLKSLRVQGCSKLESI-AETLDNSTSLETIHIFYCENMKILPSGLHNLRQLQEISIEGCGNLESFPE-GGLPC 172 (355)
Q Consensus 95 ~~~~~~~~L~~L~l~~~~~~~~~-~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~l~~~~~-~~~~~ 172 (355)
|. ..+++++.|++++|. +..+ +..+..+++|++|++++|......+..+.++++|+.|++++| .++.+|. .+..+
T Consensus 70 P~-~~~~~l~~L~L~~n~-i~~~~~~~~~~l~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~L~~n-~l~~~~~~~~~~l 146 (452)
T 3zyi_A 70 PQ-GIPSNTRYLNLMENN-IQMIQADTFRHLHHLEVLQLGRNSIRQIEVGAFNGLASLNTLELFDN-WLTVIPSGAFEYL 146 (452)
T ss_dssp CS-CCCTTCSEEECCSSC-CCEECTTTTTTCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSS-CCSBCCTTTSSSC
T ss_pred CC-CCCCCccEEECcCCc-CceECHHHcCCCCCCCEEECCCCccCCcChhhccCcccCCEEECCCC-cCCccChhhhccc
Confidence 53 345799999999998 6554 577899999999999998843334577889999999999997 5777765 46779
Q ss_pred CCcceEEEccccCcCccc-ccccCCCCCceEEEee-c---CcCC--CCCCCCccEEEecCCcchhhhhhhhcccCCCCCc
Q 018478 173 AKLKEVVIRWCGRLEALP-KGLHNLKSLQKLTIGK-G---GLEE--DGLPTNLHSLDIRGNMEIWKSMIEWGQGFHRFSS 245 (355)
Q Consensus 173 ~~L~~L~l~~~~~~~~~p-~~l~~~~~L~~L~l~~-~---~i~~--~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~l~~ 245 (355)
++|++|++++|. ++.++ ..+..+++|++|+++. + .++. ...+++|+.|++++|... ..+. +..+++
T Consensus 147 ~~L~~L~L~~N~-l~~~~~~~~~~l~~L~~L~l~~~~~l~~i~~~~~~~l~~L~~L~L~~n~l~-~~~~-----~~~l~~ 219 (452)
T 3zyi_A 147 SKLRELWLRNNP-IESIPSYAFNRVPSLMRLDLGELKKLEYISEGAFEGLFNLKYLNLGMCNIK-DMPN-----LTPLVG 219 (452)
T ss_dssp TTCCEEECCSCC-CCEECTTTTTTCTTCCEEECCCCTTCCEECTTTTTTCTTCCEEECTTSCCS-SCCC-----CTTCTT
T ss_pred CCCCEEECCCCC-cceeCHhHHhcCCcccEEeCCCCCCccccChhhccCCCCCCEEECCCCccc-cccc-----cccccc
Confidence 999999999965 55555 4789999999999983 2 2332 345789999999998744 3332 788999
Q ss_pred cceeEecccCCcccccCccccccCCCCCCCCccceEEeccCCCcccc-cccCCCCCCccEEeeCCCCCCcccCCCCC--C
Q 018478 246 LRELRIEGCDDDMVSFPPEDIRMGTTLPLPTSLTSLAIFSFPNLERL-SSSIVDLQNLTSLYLVGCPKLKYFPEKGL--P 322 (355)
Q Consensus 246 L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~l-~~~~~~~~~L~~L~l~~~~~l~~~~~~~~--~ 322 (355)
|++|++++ +.+..+++..+ ..+++|+.|++++ +.++.+ +..+..+++|++|++++| +++.++...+ +
T Consensus 220 L~~L~Ls~--N~l~~~~~~~~------~~l~~L~~L~L~~-n~l~~~~~~~~~~l~~L~~L~L~~N-~l~~~~~~~~~~l 289 (452)
T 3zyi_A 220 LEELEMSG--NHFPEIRPGSF------HGLSSLKKLWVMN-SQVSLIERNAFDGLASLVELNLAHN-NLSSLPHDLFTPL 289 (452)
T ss_dssp CCEEECTT--SCCSEECGGGG------TTCTTCCEEECTT-SCCCEECTTTTTTCTTCCEEECCSS-CCSCCCTTSSTTC
T ss_pred ccEEECcC--CcCcccCcccc------cCccCCCEEEeCC-CcCceECHHHhcCCCCCCEEECCCC-cCCccChHHhccc
Confidence 99999998 56666655433 5778999999999 566655 556788999999999999 8999987654 7
Q ss_pred CCccEEEecCCc
Q 018478 323 SSLLELWIGGCP 334 (355)
Q Consensus 323 ~~L~~L~l~~c~ 334 (355)
++|++|++.++|
T Consensus 290 ~~L~~L~L~~Np 301 (452)
T 3zyi_A 290 RYLVELHLHHNP 301 (452)
T ss_dssp TTCCEEECCSSC
T ss_pred cCCCEEEccCCC
Confidence 899999999876
No 55
>3zyj_A Leucine-rich repeat-containing protein 4C; cell adhesion, synapse; HET: NAG BMA MAN; 3.25A {Homo sapiens}
Probab=99.81 E-value=8.8e-19 Score=164.02 Aligned_cols=220 Identities=17% Similarity=0.269 Sum_probs=175.4
Q ss_pred ccCCCCCcccEEEEccCcchhchh-hhccCCCCCcEEEeeccCCcCcc-cccccCCCCCceEeccccCCCcCCCC-CCCC
Q 018478 95 EVGNLPPSLKSLRVQGCSKLESIA-ETLDNSTSLETIHIFYCENMKIL-PSGLHNLRQLQEISIEGCGNLESFPE-GGLP 171 (355)
Q Consensus 95 ~~~~~~~~L~~L~l~~~~~~~~~~-~~~~~l~~L~~L~l~~~~~~~~~-~~~~~~l~~L~~L~l~~~~~l~~~~~-~~~~ 171 (355)
|. ..+++++.|++++|. +..++ ..+..+++|++|++++|. +..+ +..+.++++|+.|++++| .++.++. .+..
T Consensus 59 P~-~~~~~l~~L~L~~n~-i~~~~~~~~~~l~~L~~L~Ls~n~-i~~i~~~~~~~l~~L~~L~L~~n-~l~~~~~~~~~~ 134 (440)
T 3zyj_A 59 PD-GISTNTRLLNLHENQ-IQIIKVNSFKHLRHLEILQLSRNH-IRTIEIGAFNGLANLNTLELFDN-RLTTIPNGAFVY 134 (440)
T ss_dssp CS-CCCTTCSEEECCSCC-CCEECTTTTSSCSSCCEEECCSSC-CCEECGGGGTTCSSCCEEECCSS-CCSSCCTTTSCS
T ss_pred CC-CCCCCCcEEEccCCc-CCeeCHHHhhCCCCCCEEECCCCc-CCccChhhccCCccCCEEECCCC-cCCeeCHhHhhc
Confidence 54 345789999999998 66554 678899999999999988 5554 467889999999999997 6777775 5777
Q ss_pred CCCcceEEEccccCcCccc-ccccCCCCCceEEEee-c---CcCC--CCCCCCccEEEecCCcchhhhhhhhcccCCCCC
Q 018478 172 CAKLKEVVIRWCGRLEALP-KGLHNLKSLQKLTIGK-G---GLEE--DGLPTNLHSLDIRGNMEIWKSMIEWGQGFHRFS 244 (355)
Q Consensus 172 ~~~L~~L~l~~~~~~~~~p-~~l~~~~~L~~L~l~~-~---~i~~--~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~l~ 244 (355)
+++|++|++++|. ++.++ ..+..+++|++|+++. . .++. ...+++|+.|++++|... .++. +..++
T Consensus 135 l~~L~~L~L~~N~-i~~~~~~~~~~l~~L~~L~l~~~~~l~~i~~~~~~~l~~L~~L~L~~n~l~-~~~~-----~~~l~ 207 (440)
T 3zyj_A 135 LSKLKELWLRNNP-IESIPSYAFNRIPSLRRLDLGELKRLSYISEGAFEGLSNLRYLNLAMCNLR-EIPN-----LTPLI 207 (440)
T ss_dssp CSSCCEEECCSCC-CCEECTTTTTTCTTCCEEECCCCTTCCEECTTTTTTCSSCCEEECTTSCCS-SCCC-----CTTCS
T ss_pred cccCceeeCCCCc-ccccCHHHhhhCcccCEeCCCCCCCcceeCcchhhcccccCeecCCCCcCc-cccc-----cCCCc
Confidence 9999999999965 55555 4789999999999983 2 2332 345789999999998743 3442 78899
Q ss_pred ccceeEecccCCcccccCccccccCCCCCCCCccceEEeccCCCccccc-ccCCCCCCccEEeeCCCCCCcccCCCCC--
Q 018478 245 SLRELRIEGCDDDMVSFPPEDIRMGTTLPLPTSLTSLAIFSFPNLERLS-SSIVDLQNLTSLYLVGCPKLKYFPEKGL-- 321 (355)
Q Consensus 245 ~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~l~-~~~~~~~~L~~L~l~~~~~l~~~~~~~~-- 321 (355)
+|++|++++ +.+..++...+ ..+++|+.|++++ +.++.++ ..+..+++|++|++++| +++.++...+
T Consensus 208 ~L~~L~Ls~--N~l~~~~~~~~------~~l~~L~~L~L~~-n~l~~~~~~~~~~l~~L~~L~L~~N-~l~~~~~~~~~~ 277 (440)
T 3zyj_A 208 KLDELDLSG--NHLSAIRPGSF------QGLMHLQKLWMIQ-SQIQVIERNAFDNLQSLVEINLAHN-NLTLLPHDLFTP 277 (440)
T ss_dssp SCCEEECTT--SCCCEECTTTT------TTCTTCCEEECTT-CCCCEECTTSSTTCTTCCEEECTTS-CCCCCCTTTTSS
T ss_pred ccCEEECCC--CccCccChhhh------ccCccCCEEECCC-CceeEEChhhhcCCCCCCEEECCCC-CCCccChhHhcc
Confidence 999999998 56766654332 5778999999999 5777664 46788999999999998 8999987654
Q ss_pred CCCccEEEecCCch
Q 018478 322 PSSLLELWIGGCPL 335 (355)
Q Consensus 322 ~~~L~~L~l~~c~~ 335 (355)
+++|++|++.++|.
T Consensus 278 l~~L~~L~L~~Np~ 291 (440)
T 3zyj_A 278 LHHLERIHLHHNPW 291 (440)
T ss_dssp CTTCCEEECCSSCE
T ss_pred ccCCCEEEcCCCCc
Confidence 69999999998763
No 56
>2z80_A TOLL-like receptor 2, variable lymphocyte recepto; TLR2, lipopeptide, innate immunity, glycoprotein, immune RES inflammatory response; HET: NAG; 1.80A {Homo sapiens}
Probab=99.81 E-value=4.4e-19 Score=161.21 Aligned_cols=267 Identities=16% Similarity=0.144 Sum_probs=196.5
Q ss_pred CCCccEEeecccccCcccccCccCCCcceEecccCccccccccccCcCCCCCCCccccccccccEEEecCCCccchhccc
Q 018478 5 NSSLEILEIWSCRSLTYLAAVQLPRSLKRLDIQCCSNIRTLTMEEGIQSSSSSSSRRYTSYLLEELCISSCRSLTSIFSK 84 (355)
Q Consensus 5 ~~~L~~L~l~~~~~l~~l~~~~~~~~L~~L~l~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~~~~~ 84 (355)
|+.....++++ ..++.+|. .++++|++|+++++ .++.++... +..+++|++|+++++ .++.+
T Consensus 30 C~~~~~c~~~~-~~l~~iP~-~~~~~L~~L~l~~n-~i~~~~~~~-----------~~~l~~L~~L~L~~n-~l~~~--- 91 (353)
T 2z80_A 30 CDRNGICKGSS-GSLNSIPS-GLTEAVKSLDLSNN-RITYISNSD-----------LQRCVNLQALVLTSN-GINTI--- 91 (353)
T ss_dssp ECTTSEEECCS-TTCSSCCT-TCCTTCCEEECTTS-CCCEECTTT-----------TTTCTTCCEEECTTS-CCCEE---
T ss_pred CCCCeEeeCCC-CCcccccc-cccccCcEEECCCC-cCcccCHHH-----------hccCCCCCEEECCCC-ccCcc---
Confidence 34444555553 46777774 55689999999994 578777643 566999999999986 44544
Q ss_pred cccchhcccccc--CCCCCcccEEEEccCcchhchhhh-ccCCCCCcEEEeeccCCcCcccc--cccCCCCCceEecccc
Q 018478 85 NELSATLESLEV--GNLPPSLKSLRVQGCSKLESIAET-LDNSTSLETIHIFYCENMKILPS--GLHNLRQLQEISIEGC 159 (355)
Q Consensus 85 n~~~~~~~~~~~--~~~~~~L~~L~l~~~~~~~~~~~~-~~~l~~L~~L~l~~~~~~~~~~~--~~~~l~~L~~L~l~~~ 159 (355)
+. ...+++|++|++++|. +..++.. +..+++|++|++++|. +..++. .+..+++|+.|++++|
T Consensus 92 ----------~~~~~~~l~~L~~L~Ls~n~-l~~~~~~~~~~l~~L~~L~L~~n~-l~~l~~~~~~~~l~~L~~L~l~~n 159 (353)
T 2z80_A 92 ----------EEDSFSSLGSLEHLDLSYNY-LSNLSSSWFKPLSSLTFLNLLGNP-YKTLGETSLFSHLTKLQILRVGNM 159 (353)
T ss_dssp ----------CTTTTTTCTTCCEEECCSSC-CSSCCHHHHTTCTTCSEEECTTCC-CSSSCSSCSCTTCTTCCEEEEEES
T ss_pred ----------CHhhcCCCCCCCEEECCCCc-CCcCCHhHhCCCccCCEEECCCCC-CcccCchhhhccCCCCcEEECCCC
Confidence 32 2445899999999988 7777654 8889999999999987 667765 6888999999999998
Q ss_pred CCCcCCC-CCCCCCCCcceEEEccccCcCcccccccCCCCCceEEEeecCcCCC-----CCCCCccEEEecCCcchhhhh
Q 018478 160 GNLESFP-EGGLPCAKLKEVVIRWCGRLEALPKGLHNLKSLQKLTIGKGGLEED-----GLPTNLHSLDIRGNMEIWKSM 233 (355)
Q Consensus 160 ~~l~~~~-~~~~~~~~L~~L~l~~~~~~~~~p~~l~~~~~L~~L~l~~~~i~~~-----~~~~~L~~L~l~~~~~~~~~~ 233 (355)
..+..++ ..+..+++|++|++++|......|..+..+++|++|+++.+.+... ..+++|+.|++++|.......
T Consensus 160 ~~~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~~~~~~~L~~L~L~~n~l~~~~~ 239 (353)
T 2z80_A 160 DTFTKIQRKDFAGLTFLEELEIDASDLQSYEPKSLKSIQNVSHLILHMKQHILLLEIFVDVTSSVECLELRDTDLDTFHF 239 (353)
T ss_dssp SSCCEECTTTTTTCCEEEEEEEEETTCCEECTTTTTTCSEEEEEEEECSCSTTHHHHHHHHTTTEEEEEEESCBCTTCCC
T ss_pred ccccccCHHHccCCCCCCEEECCCCCcCccCHHHHhccccCCeecCCCCccccchhhhhhhcccccEEECCCCccccccc
Confidence 6566664 5677899999999999765555578899999999999995555432 236899999999987443221
Q ss_pred hhhcccCCCCCccceeEecccCC----cccccCccccccCCCCCCCCccceEEeccCCCcccccccC-CCCCCccEEeeC
Q 018478 234 IEWGQGFHRFSSLRELRIEGCDD----DMVSFPPEDIRMGTTLPLPTSLTSLAIFSFPNLERLSSSI-VDLQNLTSLYLV 308 (355)
Q Consensus 234 ~~~~~~~~~l~~L~~L~l~~~~~----~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~l~~~~-~~~~~L~~L~l~ 308 (355)
... ......+.++.+++++ +. .+..+|..+ ..+++|++|++++ +.++.+|..+ ..+++|++|+++
T Consensus 240 ~~l-~~~~~~~~l~~l~L~~-~~l~~~~l~~l~~~l-------~~l~~L~~L~Ls~-N~l~~i~~~~~~~l~~L~~L~L~ 309 (353)
T 2z80_A 240 SEL-STGETNSLIKKFTFRN-VKITDESLFQVMKLL-------NQISGLLELEFSR-NQLKSVPDGIFDRLTSLQKIWLH 309 (353)
T ss_dssp C-------CCCCCCEEEEES-CBCCHHHHHHHHHHH-------HTCTTCCEEECCS-SCCCCCCTTTTTTCTTCCEEECC
T ss_pred ccc-ccccccchhhcccccc-ccccCcchhhhHHHH-------hcccCCCEEECCC-CCCCccCHHHHhcCCCCCEEEee
Confidence 111 0123456778888877 22 122345444 4678999999999 6888998875 889999999999
Q ss_pred CCC
Q 018478 309 GCP 311 (355)
Q Consensus 309 ~~~ 311 (355)
+|+
T Consensus 310 ~N~ 312 (353)
T 2z80_A 310 TNP 312 (353)
T ss_dssp SSC
T ss_pred CCC
Confidence 984
No 57
>3g06_A SSPH2 (leucine-rich repeat protein); E3 ubiquitin ligase, leucine rich repeat domain, type three effector, salmonella virulence factor; 1.90A {Salmonella typhimurium}
Probab=99.80 E-value=4.4e-18 Score=164.79 Aligned_cols=232 Identities=28% Similarity=0.323 Sum_probs=187.4
Q ss_pred CCcceEecccCccccccccccCcCCCCCCCccccccccccEEEecCCCccchhccccccchhccccccCCCCCcccEEEE
Q 018478 29 RSLKRLDIQCCSNIRTLTMEEGIQSSSSSSSRRYTSYLLEELCISSCRSLTSIFSKNELSATLESLEVGNLPPSLKSLRV 108 (355)
Q Consensus 29 ~~L~~L~l~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~~~~~n~~~~~~~~~~~~~~~~~L~~L~l 108 (355)
.+++.|++++ +.++.+|... .++|+.|+++++ .++.+ +. .+++|++|++
T Consensus 40 ~~l~~L~ls~-n~L~~lp~~l--------------~~~L~~L~L~~N-~l~~l-------------p~--~l~~L~~L~L 88 (622)
T 3g06_A 40 NGNAVLNVGE-SGLTTLPDCL--------------PAHITTLVIPDN-NLTSL-------------PA--LPPELRTLEV 88 (622)
T ss_dssp HCCCEEECCS-SCCSCCCSCC--------------CTTCSEEEECSC-CCSCC-------------CC--CCTTCCEEEE
T ss_pred CCCcEEEecC-CCcCccChhh--------------CCCCcEEEecCC-CCCCC-------------CC--cCCCCCEEEc
Confidence 4689999998 5688888876 578999999986 56677 65 5689999999
Q ss_pred ccCcchhchhhhccCCCCCcEEEeeccCCcCcccccccCCCCCceEeccccCCCcCCCCCCCCCCCcceEEEccccCcCc
Q 018478 109 QGCSKLESIAETLDNSTSLETIHIFYCENMKILPSGLHNLRQLQEISIEGCGNLESFPEGGLPCAKLKEVVIRWCGRLEA 188 (355)
Q Consensus 109 ~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~l~~~~~~~~~~~~L~~L~l~~~~~~~~ 188 (355)
++|. ++.+|. .+++|++|++++|. +..+|. .+++|+.|++++| .+..+|.. +++|+.|++++| .++.
T Consensus 89 s~N~-l~~lp~---~l~~L~~L~Ls~N~-l~~l~~---~l~~L~~L~L~~N-~l~~lp~~---l~~L~~L~Ls~N-~l~~ 155 (622)
T 3g06_A 89 SGNQ-LTSLPV---LPPGLLELSIFSNP-LTHLPA---LPSGLCKLWIFGN-QLTSLPVL---PPGLQELSVSDN-QLAS 155 (622)
T ss_dssp CSCC-CSCCCC---CCTTCCEEEECSCC-CCCCCC---CCTTCCEEECCSS-CCSCCCCC---CTTCCEEECCSS-CCSC
T ss_pred CCCc-CCcCCC---CCCCCCEEECcCCc-CCCCCC---CCCCcCEEECCCC-CCCcCCCC---CCCCCEEECcCC-cCCC
Confidence 9998 777876 57999999999987 777766 5789999999997 67778764 379999999996 5666
Q ss_pred ccccccCCCCCceEEEeecCcCCC-CCCCCccEEEecCCcchhhhhhhhcccCCCCCccceeEecccCCcccccCccccc
Q 018478 189 LPKGLHNLKSLQKLTIGKGGLEED-GLPTNLHSLDIRGNMEIWKSMIEWGQGFHRFSSLRELRIEGCDDDMVSFPPEDIR 267 (355)
Q Consensus 189 ~p~~l~~~~~L~~L~l~~~~i~~~-~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~ 267 (355)
+|. .+++|+.|+++.+.+... ..+++|+.|++++|... .++ ...++|+.|++++ +.+..++.
T Consensus 156 l~~---~~~~L~~L~L~~N~l~~l~~~~~~L~~L~Ls~N~l~-~l~-------~~~~~L~~L~L~~--N~l~~l~~---- 218 (622)
T 3g06_A 156 LPA---LPSELCKLWAYNNQLTSLPMLPSGLQELSVSDNQLA-SLP-------TLPSELYKLWAYN--NRLTSLPA---- 218 (622)
T ss_dssp CCC---CCTTCCEEECCSSCCSCCCCCCTTCCEEECCSSCCS-CCC-------CCCTTCCEEECCS--SCCSSCCC----
T ss_pred cCC---ccCCCCEEECCCCCCCCCcccCCCCcEEECCCCCCC-CCC-------CccchhhEEECcC--CcccccCC----
Confidence 664 356899999984444432 45689999999998743 222 2357999999998 56777774
Q ss_pred cCCCCCCCCccceEEeccCCCcccccccCCCCCCccEEeeCCCCCCcccCCCCCCCCccEEEecCCc
Q 018478 268 MGTTLPLPTSLTSLAIFSFPNLERLSSSIVDLQNLTSLYLVGCPKLKYFPEKGLPSSLLELWIGGCP 334 (355)
Q Consensus 268 ~~~~~~~~~~L~~L~l~~~~~l~~l~~~~~~~~~L~~L~l~~~~~l~~~~~~~~~~~L~~L~l~~c~ 334 (355)
.+++|+.|++++ +.++.+| ..+++|++|++++| +++.+|. .+++|++|++.+|.
T Consensus 219 ------~~~~L~~L~Ls~-N~L~~lp---~~l~~L~~L~Ls~N-~L~~lp~--~~~~L~~L~Ls~N~ 272 (622)
T 3g06_A 219 ------LPSGLKELIVSG-NRLTSLP---VLPSELKELMVSGN-RLTSLPM--LPSGLLSLSVYRNQ 272 (622)
T ss_dssp ------CCTTCCEEECCS-SCCSCCC---CCCTTCCEEECCSS-CCSCCCC--CCTTCCEEECCSSC
T ss_pred ------CCCCCCEEEccC-CccCcCC---CCCCcCcEEECCCC-CCCcCCc--ccccCcEEeCCCCC
Confidence 457999999998 6888888 67899999999998 8999987 67999999999884
No 58
>3o53_A Protein LRIM1, AGAP006348-PA; leucine-rich repeat, protein binding; HET: NAG; 2.00A {Anopheles gambiae}
Probab=99.80 E-value=1.6e-20 Score=168.25 Aligned_cols=261 Identities=13% Similarity=0.082 Sum_probs=164.9
Q ss_pred CCcceEecccCccccccccccCcCCCCCCCccccccccccEEEecCCCccchhccccccchhccccccCCCCCcccEEEE
Q 018478 29 RSLKRLDIQCCSNIRTLTMEEGIQSSSSSSSRRYTSYLLEELCISSCRSLTSIFSKNELSATLESLEVGNLPPSLKSLRV 108 (355)
Q Consensus 29 ~~L~~L~l~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~~~~~n~~~~~~~~~~~~~~~~~L~~L~l 108 (355)
++|++|+++++ .+..++... +..+++|++|+++++. ++.. +....+++|++|++
T Consensus 34 ~~L~~L~L~~n-~l~~~~~~~-----------~~~l~~L~~L~Ls~n~-l~~~-------------~~~~~l~~L~~L~L 87 (317)
T 3o53_A 34 WNVKELDLSGN-PLSQISAAD-----------LAPFTKLELLNLSSNV-LYET-------------LDLESLSTLRTLDL 87 (317)
T ss_dssp GGCSEEECTTS-CCCCCCHHH-----------HTTCTTCCEEECTTSC-CEEE-------------EEETTCTTCCEEEC
T ss_pred CCCCEEECcCC-ccCcCCHHH-----------hhCCCcCCEEECCCCc-CCcc-------------hhhhhcCCCCEEEC
Confidence 68888888884 566665432 4558888888888763 3433 22344578888888
Q ss_pred ccCcchhchhhhccCCCCCcEEEeeccCCcCcccccccCCCCCceEeccccCCCcCCC-CCCCCCCCcceEEEccccCcC
Q 018478 109 QGCSKLESIAETLDNSTSLETIHIFYCENMKILPSGLHNLRQLQEISIEGCGNLESFP-EGGLPCAKLKEVVIRWCGRLE 187 (355)
Q Consensus 109 ~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~l~~~~-~~~~~~~~L~~L~l~~~~~~~ 187 (355)
++|. +..++. .++|++|++++|. +..++.. .+++|+.|++++| .+..++ ..+..+++|+.|++++|....
T Consensus 88 s~n~-l~~l~~----~~~L~~L~l~~n~-l~~~~~~--~~~~L~~L~l~~N-~l~~~~~~~~~~l~~L~~L~Ls~N~l~~ 158 (317)
T 3o53_A 88 NNNY-VQELLV----GPSIETLHAANNN-ISRVSCS--RGQGKKNIYLANN-KITMLRDLDEGCRSRVQYLDLKLNEIDT 158 (317)
T ss_dssp CSSE-EEEEEE----CTTCCEEECCSSC-CSEEEEC--CCSSCEEEECCSS-CCCSGGGBCTGGGSSEEEEECTTSCCCE
T ss_pred cCCc-cccccC----CCCcCEEECCCCc-cCCcCcc--ccCCCCEEECCCC-CCCCccchhhhccCCCCEEECCCCCCCc
Confidence 8887 665543 4888888888877 5555432 3678888888887 455543 456667888888888865433
Q ss_pred cccccc-cCCCCCceEEEeecC---cCCCCCCCCccEEEecCCcchhhhhhhhcccCCCCCccceeEecccCCcccccCc
Q 018478 188 ALPKGL-HNLKSLQKLTIGKGG---LEEDGLPTNLHSLDIRGNMEIWKSMIEWGQGFHRFSSLRELRIEGCDDDMVSFPP 263 (355)
Q Consensus 188 ~~p~~l-~~~~~L~~L~l~~~~---i~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~ 263 (355)
..+..+ ..+++|++|+++.+. ++....+++|+.|++++|... ..+.. +..+++|++|++++ +.++.+|.
T Consensus 159 ~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~l~~L~~L~Ls~N~l~-~l~~~----~~~l~~L~~L~L~~--N~l~~l~~ 231 (317)
T 3o53_A 159 VNFAELAASSDTLEHLNLQYNFIYDVKGQVVFAKLKTLDLSSNKLA-FMGPE----FQSAAGVTWISLRN--NKLVLIEK 231 (317)
T ss_dssp EEGGGGGGGTTTCCEEECTTSCCCEEECCCCCTTCCEEECCSSCCC-EECGG----GGGGTTCSEEECTT--SCCCEECT
T ss_pred ccHHHHhhccCcCCEEECCCCcCcccccccccccCCEEECCCCcCC-cchhh----hcccCcccEEECcC--Ccccchhh
Confidence 334444 467888888887333 333445677888888777643 23221 55667788888877 46666666
Q ss_pred cccccCCCCCCCCccceEEeccCCCcc--cccccCCCCCCccEEeeCCCCCCcccCCCCC-CCCccEEEecCCchhhHh
Q 018478 264 EDIRMGTTLPLPTSLTSLAIFSFPNLE--RLSSSIVDLQNLTSLYLVGCPKLKYFPEKGL-PSSLLELWIGGCPLIEEK 339 (355)
Q Consensus 264 ~~~~~~~~~~~~~~L~~L~l~~~~~l~--~l~~~~~~~~~L~~L~l~~~~~l~~~~~~~~-~~~L~~L~l~~c~~l~~~ 339 (355)
.+ ..+++|+.|+++++ .+. .++.++..+++|+.+++.++..++..+.... .+.+....-..|..+...
T Consensus 232 ~~-------~~l~~L~~L~l~~N-~~~~~~~~~~~~~~~~L~~l~l~~~~~l~~~~~~~~~~~~~~~~~~~cc~~l~~~ 302 (317)
T 3o53_A 232 AL-------RFSQNLEHFDLRGN-GFHCGTLRDFFSKNQRVQTVAKQTVKKLTGQNEEECTVPTLGHYGAYCCEDLPAP 302 (317)
T ss_dssp TC-------CCCTTCCEEECTTC-CCBHHHHHHHHHTCHHHHHHHHHHHHHHHSSSSCCCSSTTCEEETTEEEBCCTTT
T ss_pred Hh-------hcCCCCCEEEccCC-CccCcCHHHHHhccccceEEECCCchhccCCchhccCCCceecccceeeccCChh
Confidence 55 45677788888774 333 5556667777777777775544444433222 233333333345554443
No 59
>1wwl_A Monocyte differentiation antigen CD14; LPS, immune system; HET: NAG; 2.50A {Mus musculus}
Probab=99.79 E-value=4.8e-20 Score=164.73 Aligned_cols=195 Identities=15% Similarity=0.081 Sum_probs=103.7
Q ss_pred CCCCcEEEeeccCCcCcccccc--cCCCCCceEeccccCCCcCCCCCCCCC-----CCcceEEEccccCcCcccccccCC
Q 018478 124 STSLETIHIFYCENMKILPSGL--HNLRQLQEISIEGCGNLESFPEGGLPC-----AKLKEVVIRWCGRLEALPKGLHNL 196 (355)
Q Consensus 124 l~~L~~L~l~~~~~~~~~~~~~--~~l~~L~~L~l~~~~~l~~~~~~~~~~-----~~L~~L~l~~~~~~~~~p~~l~~~ 196 (355)
+++|++|++++|.....+|..+ ..+++|+.|++++| .+...|..+..+ ++|++|++++|......|..++.+
T Consensus 94 l~~L~~L~L~~n~l~~~~~~~~~~~~l~~L~~L~Ls~N-~l~~~~~~~~~l~~~~~~~L~~L~L~~N~l~~~~~~~~~~l 172 (312)
T 1wwl_A 94 ISGLQELTLENLEVTGTAPPPLLEATGPDLNILNLRNV-SWATRDAWLAELQQWLKPGLKVLSIAQAHSLNFSCEQVRVF 172 (312)
T ss_dssp TSCCCEEEEEEEBCBSCCCCCSSSCCSCCCSEEEEESC-BCSSSSSHHHHHHTTCCTTCCEEEEESCSCCCCCTTTCCCC
T ss_pred cCCccEEEccCCcccchhHHHHHHhcCCCccEEEccCC-CCcchhHHHHHHHHhhcCCCcEEEeeCCCCccchHHHhccC
Confidence 4455555555444222334333 44445555555444 233333322222 455555555433222222444555
Q ss_pred CCCceEEEeecCcC-------CC--CCCCCccEEEecCCcchh--hhhhhhcccCCCCCccceeEecccCCcccccC-cc
Q 018478 197 KSLQKLTIGKGGLE-------ED--GLPTNLHSLDIRGNMEIW--KSMIEWGQGFHRFSSLRELRIEGCDDDMVSFP-PE 264 (355)
Q Consensus 197 ~~L~~L~l~~~~i~-------~~--~~~~~L~~L~l~~~~~~~--~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~-~~ 264 (355)
++|++|+++.+.+. .. ..+++|+.|++++|.... ..+.. . +..+++|++|++++ +.+...+ ..
T Consensus 173 ~~L~~L~Ls~N~l~~~~~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~-~--~~~l~~L~~L~Ls~--N~l~~~~~~~ 247 (312)
T 1wwl_A 173 PALSTLDLSDNPELGERGLISALCPLKFPTLQVLALRNAGMETPSGVCSA-L--AAARVQLQGLDLSH--NSLRDAAGAP 247 (312)
T ss_dssp SSCCEEECCSCTTCHHHHHHHHSCTTSCTTCCEEECTTSCCCCHHHHHHH-H--HHTTCCCSEEECTT--SCCCSSCCCS
T ss_pred CCCCEEECCCCCcCcchHHHHHHHhccCCCCCEEECCCCcCcchHHHHHH-H--HhcCCCCCEEECCC--CcCCcccchh
Confidence 55555555422211 11 344566777777765331 12211 1 45677888888887 4454433 11
Q ss_pred ccccCCCCCCCCccceEEeccCCCcccccccCCCCCCccEEeeCCCCCCcccCCCCCCCCccEEEecCCc
Q 018478 265 DIRMGTTLPLPTSLTSLAIFSFPNLERLSSSIVDLQNLTSLYLVGCPKLKYFPEKGLPSSLLELWIGGCP 334 (355)
Q Consensus 265 ~~~~~~~~~~~~~L~~L~l~~~~~l~~l~~~~~~~~~L~~L~l~~~~~l~~~~~~~~~~~L~~L~l~~c~ 334 (355)
.+ ..+++|++|++++ +.++.+|..+. ++|++|++++| +++.+|....+++|++|++.+++
T Consensus 248 ~~------~~l~~L~~L~Ls~-N~l~~ip~~~~--~~L~~L~Ls~N-~l~~~p~~~~l~~L~~L~L~~N~ 307 (312)
T 1wwl_A 248 SC------DWPSQLNSLNLSF-TGLKQVPKGLP--AKLSVLDLSYN-RLDRNPSPDELPQVGNLSLKGNP 307 (312)
T ss_dssp CC------CCCTTCCEEECTT-SCCSSCCSSCC--SEEEEEECCSS-CCCSCCCTTTSCEEEEEECTTCT
T ss_pred hh------hhcCCCCEEECCC-CccChhhhhcc--CCceEEECCCC-CCCCChhHhhCCCCCEEeccCCC
Confidence 11 3457788888887 56777776544 77888888887 67777653346788888887765
No 60
>4g8a_A TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, immune system; HET: NAG LP4 LP5 DAO MYR KDO; 2.40A {Homo sapiens} PDB: 3fxi_A*
Probab=99.79 E-value=8.6e-18 Score=164.05 Aligned_cols=60 Identities=20% Similarity=0.069 Sum_probs=47.8
Q ss_pred CCCCccceEEeccCCCcccc-cccCCCCCCccEEeeCCCCCCcccCCCCC--CCCccEEEecCCc
Q 018478 273 PLPTSLTSLAIFSFPNLERL-SSSIVDLQNLTSLYLVGCPKLKYFPEKGL--PSSLLELWIGGCP 334 (355)
Q Consensus 273 ~~~~~L~~L~l~~~~~l~~l-~~~~~~~~~L~~L~l~~~~~l~~~~~~~~--~~~L~~L~l~~c~ 334 (355)
..+++|++|++++ +.++.+ |..+.++++|++|++++| +++.++...+ +++|++|+++++.
T Consensus 491 ~~l~~L~~L~Ls~-N~L~~l~~~~f~~l~~L~~L~Ls~N-~l~~l~~~~~~~l~~L~~L~Ls~N~ 553 (635)
T 4g8a_A 491 TELRNLTFLDLSQ-CQLEQLSPTAFNSLSSLQVLNMSHN-NFFSLDTFPYKCLNSLQVLDYSLNH 553 (635)
T ss_dssp TTCTTCCEEECTT-SCCCEECTTTTTTCTTCCEEECTTS-CCCBCCCGGGTTCTTCCEEECTTSC
T ss_pred hhccccCEEECCC-CccCCcChHHHcCCCCCCEEECCCC-cCCCCChhHHhCCCCCCEEECCCCc
Confidence 5667899999998 467766 456788999999999998 7888876543 6899999998874
No 61
>1ozn_A Reticulon 4 receptor; NOGO receptor, MAD, myelination inhibition, OMGP, MAG, NOGO- signal transduction, neuronal regeneration, ligand binding; HET: NDG MAN NAG BMA; 1.52A {Homo sapiens} SCOP: c.10.2.7 PDB: 1p8t_A* 3kj4_A*
Probab=99.78 E-value=2.1e-18 Score=151.91 Aligned_cols=167 Identities=19% Similarity=0.250 Sum_probs=103.7
Q ss_pred cEEeecccccCcccccCccCCCcceEecccCccccccccccCcCCCCCCCccccccccccEEEecCCCccchhccccccc
Q 018478 9 EILEIWSCRSLTYLAAVQLPRSLKRLDIQCCSNIRTLTMEEGIQSSSSSSSRRYTSYLLEELCISSCRSLTSIFSKNELS 88 (355)
Q Consensus 9 ~~L~l~~~~~l~~l~~~~~~~~L~~L~l~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~~~~~n~~~ 88 (355)
+.+++++ ..++.+| ..++++|++|++++ +.+..++... +..+++|++|+++++ .++.+
T Consensus 14 ~~~~c~~-~~l~~ip-~~~~~~l~~L~l~~-n~i~~~~~~~-----------~~~~~~L~~L~l~~n-~l~~~------- 71 (285)
T 1ozn_A 14 VTTSCPQ-QGLQAVP-VGIPAASQRIFLHG-NRISHVPAAS-----------FRACRNLTILWLHSN-VLARI------- 71 (285)
T ss_dssp CEEECCS-SCCSSCC-TTCCTTCSEEECTT-SCCCEECTTT-----------TTTCTTCCEEECCSS-CCCEE-------
T ss_pred eEEEcCc-CCcccCC-cCCCCCceEEEeeC-CcCCccCHHH-----------cccCCCCCEEECCCC-cccee-------
Confidence 4555553 4566665 34567888888887 4466665433 455777888888765 33333
Q ss_pred hhcccccc--CCCCCcccEEEEccCcchhch-hhhccCCCCCcEEEeeccCCcCcccccccCCCCCceEeccccCCCcCC
Q 018478 89 ATLESLEV--GNLPPSLKSLRVQGCSKLESI-AETLDNSTSLETIHIFYCENMKILPSGLHNLRQLQEISIEGCGNLESF 165 (355)
Q Consensus 89 ~~~~~~~~--~~~~~~L~~L~l~~~~~~~~~-~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~l~~~ 165 (355)
.. ...+++|+.|++++|..+..+ +..+..+++|++|++++|......+..+..+++|+.|++++| .+..+
T Consensus 72 ------~~~~~~~l~~L~~L~l~~n~~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n-~l~~~ 144 (285)
T 1ozn_A 72 ------DAAAFTGLALLEQLDLSDNAQLRSVDPATFHGLGRLHTLHLDRCGLQELGPGLFRGLAALQYLYLQDN-ALQAL 144 (285)
T ss_dssp ------CTTTTTTCTTCCEEECCSCTTCCCCCTTTTTTCTTCCEEECTTSCCCCCCTTTTTTCTTCCEEECCSS-CCCCC
T ss_pred ------CHhhcCCccCCCEEeCCCCCCccccCHHHhcCCcCCCEEECCCCcCCEECHhHhhCCcCCCEEECCCC-ccccc
Confidence 21 233467788888777545554 556677778888888777733333556677777888888776 45555
Q ss_pred CC-CCCCCCCcceEEEccccCcCcccc-cccCCCCCceEEEe
Q 018478 166 PE-GGLPCAKLKEVVIRWCGRLEALPK-GLHNLKSLQKLTIG 205 (355)
Q Consensus 166 ~~-~~~~~~~L~~L~l~~~~~~~~~p~-~l~~~~~L~~L~l~ 205 (355)
+. .+..+++|+.|++++|. ++.++. .+..+++|++|+++
T Consensus 145 ~~~~~~~l~~L~~L~l~~n~-l~~~~~~~~~~l~~L~~L~l~ 185 (285)
T 1ozn_A 145 PDDTFRDLGNLTHLFLHGNR-ISSVPERAFRGLHSLDRLLLH 185 (285)
T ss_dssp CTTTTTTCTTCCEEECCSSC-CCEECTTTTTTCTTCCEEECC
T ss_pred CHhHhccCCCccEEECCCCc-ccccCHHHhcCccccCEEECC
Confidence 43 35567777777777753 444443 45666666666665
No 62
>1wwl_A Monocyte differentiation antigen CD14; LPS, immune system; HET: NAG; 2.50A {Mus musculus}
Probab=99.78 E-value=9.7e-20 Score=162.72 Aligned_cols=197 Identities=19% Similarity=0.164 Sum_probs=151.5
Q ss_pred CCcccEEEEccCcchhchhhhc--cCCCCCcEEEeeccCCcCcccccccCC-----CCCceEeccccCCCcCCC-CCCCC
Q 018478 100 PPSLKSLRVQGCSKLESIAETL--DNSTSLETIHIFYCENMKILPSGLHNL-----RQLQEISIEGCGNLESFP-EGGLP 171 (355)
Q Consensus 100 ~~~L~~L~l~~~~~~~~~~~~~--~~l~~L~~L~l~~~~~~~~~~~~~~~l-----~~L~~L~l~~~~~l~~~~-~~~~~ 171 (355)
+++|++|++++|.....+|..+ ..+++|++|++++|. +...|..++.+ ++|+.|++++| .+..++ ..+..
T Consensus 94 l~~L~~L~L~~n~l~~~~~~~~~~~~l~~L~~L~Ls~N~-l~~~~~~~~~l~~~~~~~L~~L~L~~N-~l~~~~~~~~~~ 171 (312)
T 1wwl_A 94 ISGLQELTLENLEVTGTAPPPLLEATGPDLNILNLRNVS-WATRDAWLAELQQWLKPGLKVLSIAQA-HSLNFSCEQVRV 171 (312)
T ss_dssp TSCCCEEEEEEEBCBSCCCCCSSSCCSCCCSEEEEESCB-CSSSSSHHHHHHTTCCTTCCEEEEESC-SCCCCCTTTCCC
T ss_pred cCCccEEEccCCcccchhHHHHHHhcCCCccEEEccCCC-CcchhHHHHHHHHhhcCCCcEEEeeCC-CCccchHHHhcc
Confidence 5789999999998334677665 789999999999988 55557666666 89999999998 455555 77888
Q ss_pred CCCcceEEEccccCcCc--ccccc--cCCCCCceEEEeecCcCCC--------CCCCCccEEEecCCcchhhhhhhhccc
Q 018478 172 CAKLKEVVIRWCGRLEA--LPKGL--HNLKSLQKLTIGKGGLEED--------GLPTNLHSLDIRGNMEIWKSMIEWGQG 239 (355)
Q Consensus 172 ~~~L~~L~l~~~~~~~~--~p~~l--~~~~~L~~L~l~~~~i~~~--------~~~~~L~~L~l~~~~~~~~~~~~~~~~ 239 (355)
+++|++|++++|..... ++..+ ..+++|++|+++.+.+... ..+++|+.|++++|......+.. .
T Consensus 172 l~~L~~L~Ls~N~l~~~~~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~-~-- 248 (312)
T 1wwl_A 172 FPALSTLDLSDNPELGERGLISALCPLKFPTLQVLALRNAGMETPSGVCSALAAARVQLQGLDLSHNSLRDAAGAP-S-- 248 (312)
T ss_dssp CSSCCEEECCSCTTCHHHHHHHHSCTTSCTTCCEEECTTSCCCCHHHHHHHHHHTTCCCSEEECTTSCCCSSCCCS-C--
T ss_pred CCCCCEEECCCCCcCcchHHHHHHHhccCCCCCEEECCCCcCcchHHHHHHHHhcCCCCCEEECCCCcCCcccchh-h--
Confidence 99999999999764433 33444 8899999999986555521 24579999999998754433211 1
Q ss_pred CCCCCccceeEecccCCcccccCccccccCCCCCCCCccceEEeccCCCcccccccCCCCCCccEEeeCCCCCCcc
Q 018478 240 FHRFSSLRELRIEGCDDDMVSFPPEDIRMGTTLPLPTSLTSLAIFSFPNLERLSSSIVDLQNLTSLYLVGCPKLKY 315 (355)
Q Consensus 240 ~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~l~~~~~~~~~L~~L~l~~~~~l~~ 315 (355)
+..+++|++|++++ +.++.+|... . ++|++|++++ +.++.+|. +..+++|++|++++| .++.
T Consensus 249 ~~~l~~L~~L~Ls~--N~l~~ip~~~--------~-~~L~~L~Ls~-N~l~~~p~-~~~l~~L~~L~L~~N-~l~~ 310 (312)
T 1wwl_A 249 CDWPSQLNSLNLSF--TGLKQVPKGL--------P-AKLSVLDLSY-NRLDRNPS-PDELPQVGNLSLKGN-PFLD 310 (312)
T ss_dssp CCCCTTCCEEECTT--SCCSSCCSSC--------C-SEEEEEECCS-SCCCSCCC-TTTSCEEEEEECTTC-TTTC
T ss_pred hhhcCCCCEEECCC--CccChhhhhc--------c-CCceEEECCC-CCCCCChh-HhhCCCCCEEeccCC-CCCC
Confidence 56689999999998 5677888755 2 7999999998 68888876 888999999999998 5654
No 63
>1ozn_A Reticulon 4 receptor; NOGO receptor, MAD, myelination inhibition, OMGP, MAG, NOGO- signal transduction, neuronal regeneration, ligand binding; HET: NDG MAN NAG BMA; 1.52A {Homo sapiens} SCOP: c.10.2.7 PDB: 1p8t_A* 3kj4_A*
Probab=99.78 E-value=5.1e-18 Score=149.48 Aligned_cols=130 Identities=18% Similarity=0.285 Sum_probs=91.2
Q ss_pred ccCCCCCcccEEEEccCcchhchh-hhccCCCCCcEEEeeccCCcCcc-cccccCCCCCceEeccccCCCcCC-CCCCCC
Q 018478 95 EVGNLPPSLKSLRVQGCSKLESIA-ETLDNSTSLETIHIFYCENMKIL-PSGLHNLRQLQEISIEGCGNLESF-PEGGLP 171 (355)
Q Consensus 95 ~~~~~~~~L~~L~l~~~~~~~~~~-~~~~~l~~L~~L~l~~~~~~~~~-~~~~~~l~~L~~L~l~~~~~l~~~-~~~~~~ 171 (355)
|. ..+++|+.|++++|. +..++ ..+..+++|++|++++|. +..+ +..+..+++|+.|++++|..+..+ |..+..
T Consensus 27 p~-~~~~~l~~L~l~~n~-i~~~~~~~~~~~~~L~~L~l~~n~-l~~~~~~~~~~l~~L~~L~l~~n~~l~~~~~~~~~~ 103 (285)
T 1ozn_A 27 PV-GIPAASQRIFLHGNR-ISHVPAASFRACRNLTILWLHSNV-LARIDAAAFTGLALLEQLDLSDNAQLRSVDPATFHG 103 (285)
T ss_dssp CT-TCCTTCSEEECTTSC-CCEECTTTTTTCTTCCEEECCSSC-CCEECTTTTTTCTTCCEEECCSCTTCCCCCTTTTTT
T ss_pred Cc-CCCCCceEEEeeCCc-CCccCHHHcccCCCCCEEECCCCc-cceeCHhhcCCccCCCEEeCCCCCCccccCHHHhcC
Confidence 54 345789999999987 66655 567889999999999887 4444 677888999999999988546666 566777
Q ss_pred CCCcceEEEccccCcCcccccccCCCCCceEEEeecCcCC-----CCCCCCccEEEecCCc
Q 018478 172 CAKLKEVVIRWCGRLEALPKGLHNLKSLQKLTIGKGGLEE-----DGLPTNLHSLDIRGNM 227 (355)
Q Consensus 172 ~~~L~~L~l~~~~~~~~~p~~l~~~~~L~~L~l~~~~i~~-----~~~~~~L~~L~l~~~~ 227 (355)
+++|++|++++|......|..+..+++|++|+++.+.+.. ...+++|+.|++++|.
T Consensus 104 l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~ 164 (285)
T 1ozn_A 104 LGRLHTLHLDRCGLQELGPGLFRGLAALQYLYLQDNALQALPDDTFRDLGNLTHLFLHGNR 164 (285)
T ss_dssp CTTCCEEECTTSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSC
T ss_pred CcCCCEEECCCCcCCEECHhHhhCCcCCCEEECCCCcccccCHhHhccCCCccEEECCCCc
Confidence 8999999999875444445667777777777776332221 1223455555555543
No 64
>3o53_A Protein LRIM1, AGAP006348-PA; leucine-rich repeat, protein binding; HET: NAG; 2.00A {Anopheles gambiae}
Probab=99.78 E-value=1.2e-18 Score=156.00 Aligned_cols=211 Identities=14% Similarity=0.145 Sum_probs=136.3
Q ss_pred CCCcccEEEEccCcchhch-hhhccCCCCCcEEEeeccCCcCcccccccCCCCCceEeccccCCCcCCCCCCCCCCCcce
Q 018478 99 LPPSLKSLRVQGCSKLESI-AETLDNSTSLETIHIFYCENMKILPSGLHNLRQLQEISIEGCGNLESFPEGGLPCAKLKE 177 (355)
Q Consensus 99 ~~~~L~~L~l~~~~~~~~~-~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~l~~~~~~~~~~~~L~~ 177 (355)
.+++|+.|++++|. +..+ |..+..+++|++|++++|. +...+. +..+++|+.|++++| .++.++. .++|+.
T Consensus 32 ~~~~L~~L~L~~n~-l~~~~~~~~~~l~~L~~L~Ls~n~-l~~~~~-~~~l~~L~~L~Ls~n-~l~~l~~----~~~L~~ 103 (317)
T 3o53_A 32 SAWNVKELDLSGNP-LSQISAADLAPFTKLELLNLSSNV-LYETLD-LESLSTLRTLDLNNN-YVQELLV----GPSIET 103 (317)
T ss_dssp TGGGCSEEECTTSC-CCCCCHHHHTTCTTCCEEECTTSC-CEEEEE-ETTCTTCCEEECCSS-EEEEEEE----CTTCCE
T ss_pred cCCCCCEEECcCCc-cCcCCHHHhhCCCcCCEEECCCCc-CCcchh-hhhcCCCCEEECcCC-ccccccC----CCCcCE
Confidence 34577888888776 4443 4567777888888887776 443333 677777888888776 4554442 357778
Q ss_pred EEEccccCcCcccccccCCCCCceEEEeecCcCC-----CCCCCCccEEEecCCcchhhhhhhhcccCCCCCccceeEec
Q 018478 178 VVIRWCGRLEALPKGLHNLKSLQKLTIGKGGLEE-----DGLPTNLHSLDIRGNMEIWKSMIEWGQGFHRFSSLRELRIE 252 (355)
Q Consensus 178 L~l~~~~~~~~~p~~l~~~~~L~~L~l~~~~i~~-----~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~l~~L~~L~l~ 252 (355)
|++++|. ++.++. ..+++|++|+++.+.+.. ...+++|+.|++++|......+..+ ...+++|++|+++
T Consensus 104 L~l~~n~-l~~~~~--~~~~~L~~L~l~~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~---~~~l~~L~~L~L~ 177 (317)
T 3o53_A 104 LHAANNN-ISRVSC--SRGQGKKNIYLANNKITMLRDLDEGCRSRVQYLDLKLNEIDTVNFAEL---AASSDTLEHLNLQ 177 (317)
T ss_dssp EECCSSC-CSEEEE--CCCSSCEEEECCSSCCCSGGGBCTGGGSSEEEEECTTSCCCEEEGGGG---GGGTTTCCEEECT
T ss_pred EECCCCc-cCCcCc--cccCCCCEEECCCCCCCCccchhhhccCCCCEEECCCCCCCcccHHHH---hhccCcCCEEECC
Confidence 8777753 344332 235677777777443332 2235678888888776443222221 3456788888888
Q ss_pred ccCCcccccCccccccCCCCCCCCccceEEeccCCCcccccccCCCCCCccEEeeCCCCCCcccCCC-CCCCCccEEEec
Q 018478 253 GCDDDMVSFPPEDIRMGTTLPLPTSLTSLAIFSFPNLERLSSSIVDLQNLTSLYLVGCPKLKYFPEK-GLPSSLLELWIG 331 (355)
Q Consensus 253 ~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~l~~~~~~~~~L~~L~l~~~~~l~~~~~~-~~~~~L~~L~l~ 331 (355)
+ +.++.++... .+++|++|++++ +.++.++..+..+++|++|++++| +++.+|.. ..+++|++|++.
T Consensus 178 ~--N~l~~~~~~~--------~l~~L~~L~Ls~-N~l~~l~~~~~~l~~L~~L~L~~N-~l~~l~~~~~~l~~L~~L~l~ 245 (317)
T 3o53_A 178 Y--NFIYDVKGQV--------VFAKLKTLDLSS-NKLAFMGPEFQSAAGVTWISLRNN-KLVLIEKALRFSQNLEHFDLR 245 (317)
T ss_dssp T--SCCCEEECCC--------CCTTCCEEECCS-SCCCEECGGGGGGTTCSEEECTTS-CCCEECTTCCCCTTCCEEECT
T ss_pred C--CcCccccccc--------ccccCCEEECCC-CcCCcchhhhcccCcccEEECcCC-cccchhhHhhcCCCCCEEEcc
Confidence 7 4555554322 467788888887 577777766777788888888887 67777653 225788888888
Q ss_pred CCch
Q 018478 332 GCPL 335 (355)
Q Consensus 332 ~c~~ 335 (355)
+++.
T Consensus 246 ~N~~ 249 (317)
T 3o53_A 246 GNGF 249 (317)
T ss_dssp TCCC
T ss_pred CCCc
Confidence 7764
No 65
>2xwt_C Thyrotropin receptor; signaling protein-immune system complex, GPCR, graves' disea autoimmunity, receptor-autoantibody complex; HET: NAG BMA MAN; 1.90A {Homo sapiens} PDB: 3g04_C*
Probab=99.77 E-value=9.2e-18 Score=143.95 Aligned_cols=207 Identities=19% Similarity=0.200 Sum_probs=145.3
Q ss_pred ccCCCCCcccEEEEccCcchhchhh-hccCCCCCcEEEeeccCCcCcccc-cccCCCCCceEeccccCCCcCCC-CCCCC
Q 018478 95 EVGNLPPSLKSLRVQGCSKLESIAE-TLDNSTSLETIHIFYCENMKILPS-GLHNLRQLQEISIEGCGNLESFP-EGGLP 171 (355)
Q Consensus 95 ~~~~~~~~L~~L~l~~~~~~~~~~~-~~~~l~~L~~L~l~~~~~~~~~~~-~~~~l~~L~~L~l~~~~~l~~~~-~~~~~ 171 (355)
|. .+++|+.|++++|. ++.+++ .+..+++|++|++++|..++.++. .+..+++|+.|++++|..++.++ ..+..
T Consensus 27 p~--~~~~l~~L~l~~n~-l~~i~~~~~~~l~~L~~L~l~~n~~l~~i~~~~f~~l~~L~~L~l~~~n~l~~i~~~~f~~ 103 (239)
T 2xwt_C 27 PS--LPPSTQTLKLIETH-LRTIPSHAFSNLPNISRIYVSIDVTLQQLESHSFYNLSKVTHIEIRNTRNLTYIDPDALKE 103 (239)
T ss_dssp CC--CCTTCCEEEEESCC-CSEECTTTTTTCTTCCEEEEECCSSCCEECTTTEESCTTCCEEEEEEETTCCEECTTSEEC
T ss_pred CC--CCCcccEEEEeCCc-ceEECHHHccCCCCCcEEeCCCCCCcceeCHhHcCCCcCCcEEECCCCCCeeEcCHHHhCC
Confidence 65 55688888888877 666654 577788888888888764655553 67778888888888733566665 34566
Q ss_pred CCCcceEEEccccCcCcccccccCCCCCceEEEeecCcCCCCCCCCccEEEecCCcchhhhhhhhcccCCCCCccc-eeE
Q 018478 172 CAKLKEVVIRWCGRLEALPKGLHNLKSLQKLTIGKGGLEEDGLPTNLHSLDIRGNMEIWKSMIEWGQGFHRFSSLR-ELR 250 (355)
Q Consensus 172 ~~~L~~L~l~~~~~~~~~p~~l~~~~~L~~L~l~~~~i~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~l~~L~-~L~ 250 (355)
+++|+.|++++|. ++.+|. +..+++|+ .|+.|++++|..++.++... +..+++|+ +|+
T Consensus 104 l~~L~~L~l~~n~-l~~lp~-~~~l~~L~----------------~L~~L~l~~N~~l~~i~~~~---~~~l~~L~~~L~ 162 (239)
T 2xwt_C 104 LPLLKFLGIFNTG-LKMFPD-LTKVYSTD----------------IFFILEITDNPYMTSIPVNA---FQGLCNETLTLK 162 (239)
T ss_dssp CTTCCEEEEEEEC-CCSCCC-CTTCCBCC----------------SEEEEEEESCTTCCEECTTT---TTTTBSSEEEEE
T ss_pred CCCCCEEeCCCCC-Cccccc-cccccccc----------------cccEEECCCCcchhhcCccc---ccchhcceeEEE
Confidence 7788888888753 444554 55544444 12256667763344444322 77889999 999
Q ss_pred ecccCCcccccCccccccCCCCCCCCccceEEeccCCCcccccc-cCCCC-CCccEEeeCCCCCCcccCCCCCCCCccEE
Q 018478 251 IEGCDDDMVSFPPEDIRMGTTLPLPTSLTSLAIFSFPNLERLSS-SIVDL-QNLTSLYLVGCPKLKYFPEKGLPSSLLEL 328 (355)
Q Consensus 251 l~~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~l~~-~~~~~-~~L~~L~l~~~~~l~~~~~~~~~~~L~~L 328 (355)
+++ +.++.++...+ ..++|++|+++++..++.++. .+..+ ++|++|++++| +++.+|.. .+++|+.|
T Consensus 163 l~~--n~l~~i~~~~~-------~~~~L~~L~L~~n~~l~~i~~~~~~~l~~~L~~L~l~~N-~l~~l~~~-~~~~L~~L 231 (239)
T 2xwt_C 163 LYN--NGFTSVQGYAF-------NGTKLDAVYLNKNKYLTVIDKDAFGGVYSGPSLLDVSQT-SVTALPSK-GLEHLKEL 231 (239)
T ss_dssp CCS--CCCCEECTTTT-------TTCEEEEEECTTCTTCCEECTTTTTTCSBCCSEEECTTC-CCCCCCCT-TCTTCSEE
T ss_pred cCC--CCCcccCHhhc-------CCCCCCEEEcCCCCCcccCCHHHhhccccCCcEEECCCC-ccccCChh-HhccCcee
Confidence 988 56778887552 336899999999546888864 46778 99999999998 79998875 56899999
Q ss_pred EecCCchh
Q 018478 329 WIGGCPLI 336 (355)
Q Consensus 329 ~l~~c~~l 336 (355)
++.+++.+
T Consensus 232 ~l~~~~~l 239 (239)
T 2xwt_C 232 IARNTWTL 239 (239)
T ss_dssp ECTTC---
T ss_pred eccCccCC
Confidence 99988753
No 66
>3oja_A Leucine-rich immune molecule 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae}
Probab=99.74 E-value=2.1e-18 Score=163.27 Aligned_cols=230 Identities=13% Similarity=0.094 Sum_probs=149.2
Q ss_pred CCcceEecccCccccccccccCcCCCCCCCccccccccccEEEecCCCccchhccccccchhccccccCCCCCcccEEEE
Q 018478 29 RSLKRLDIQCCSNIRTLTMEEGIQSSSSSSSRRYTSYLLEELCISSCRSLTSIFSKNELSATLESLEVGNLPPSLKSLRV 108 (355)
Q Consensus 29 ~~L~~L~l~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~~~~~n~~~~~~~~~~~~~~~~~L~~L~l 108 (355)
++|++|+++++ .+..++... +..+++|+.|+++++. ++.. +....+++|+.|++
T Consensus 34 ~~L~~L~Ls~n-~l~~~~~~~-----------~~~l~~L~~L~Ls~N~-l~~~-------------~~l~~l~~L~~L~L 87 (487)
T 3oja_A 34 WNVKELDLSGN-PLSQISAAD-----------LAPFTKLELLNLSSNV-LYET-------------LDLESLSTLRTLDL 87 (487)
T ss_dssp GGCCEEECCSS-CCCCCCGGG-----------GTTCTTCCEEECTTSC-CEEE-------------EECTTCTTCCEEEC
T ss_pred CCccEEEeeCC-cCCCCCHHH-----------HhCCCCCCEEEeeCCC-CCCC-------------cccccCCCCCEEEe
Confidence 57888888884 466655432 4568888888888764 4433 22445578888888
Q ss_pred ccCcchhchhhhccCCCCCcEEEeeccCCcCcccccccCCCCCceEeccccCCCcCC-CCCCCCCCCcceEEEccccCcC
Q 018478 109 QGCSKLESIAETLDNSTSLETIHIFYCENMKILPSGLHNLRQLQEISIEGCGNLESF-PEGGLPCAKLKEVVIRWCGRLE 187 (355)
Q Consensus 109 ~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~l~~~-~~~~~~~~~L~~L~l~~~~~~~ 187 (355)
++|. +..+|. .++|++|++++|. +..++. ..+++|+.|++++| .+..+ |..+..+++|+.|++++|....
T Consensus 88 s~N~-l~~l~~----~~~L~~L~L~~N~-l~~~~~--~~l~~L~~L~L~~N-~l~~~~~~~~~~l~~L~~L~Ls~N~l~~ 158 (487)
T 3oja_A 88 NNNY-VQELLV----GPSIETLHAANNN-ISRVSC--SRGQGKKNIYLANN-KITMLRDLDEGCRSRVQYLDLKLNEIDT 158 (487)
T ss_dssp CSSE-EEEEEE----CTTCCEEECCSSC-CCCEEE--CCCSSCEEEECCSS-CCCSGGGBCGGGGSSEEEEECTTSCCCE
T ss_pred cCCc-CCCCCC----CCCcCEEECcCCc-CCCCCc--cccCCCCEEECCCC-CCCCCCchhhcCCCCCCEEECCCCCCCC
Confidence 8886 666553 4788888888877 555443 24678888888887 44444 4566677888888888865444
Q ss_pred ccccccc-CCCCCceEEEeecC---cCCCCCCCCccEEEecCCcchhhhhhhhcccCCCCCccceeEecccCCcccccCc
Q 018478 188 ALPKGLH-NLKSLQKLTIGKGG---LEEDGLPTNLHSLDIRGNMEIWKSMIEWGQGFHRFSSLRELRIEGCDDDMVSFPP 263 (355)
Q Consensus 188 ~~p~~l~-~~~~L~~L~l~~~~---i~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~ 263 (355)
..|..+. .+++|++|+++.+. ++....+++|+.|++++|... ..++. +..+++|+.|++++ +.+..+|.
T Consensus 159 ~~~~~l~~~l~~L~~L~Ls~N~l~~~~~~~~l~~L~~L~Ls~N~l~-~~~~~----~~~l~~L~~L~Ls~--N~l~~lp~ 231 (487)
T 3oja_A 159 VNFAELAASSDTLEHLNLQYNFIYDVKGQVVFAKLKTLDLSSNKLA-FMGPE----FQSAAGVTWISLRN--NKLVLIEK 231 (487)
T ss_dssp EEGGGGGGGTTTCCEEECTTSCCCEEECCCCCTTCCEEECCSSCCC-EECGG----GGGGTTCSEEECTT--SCCCEECT
T ss_pred cChHHHhhhCCcccEEecCCCccccccccccCCCCCEEECCCCCCC-CCCHh----HcCCCCccEEEecC--CcCcccch
Confidence 4555654 67788888777333 333445677777777776533 23221 45667777777776 45556665
Q ss_pred cccccCCCCCCCCccceEEeccCCCcc--cccccCCCCCCccEEeeC
Q 018478 264 EDIRMGTTLPLPTSLTSLAIFSFPNLE--RLSSSIVDLQNLTSLYLV 308 (355)
Q Consensus 264 ~~~~~~~~~~~~~~L~~L~l~~~~~l~--~l~~~~~~~~~L~~L~l~ 308 (355)
.+ ..+++|+.|+++++ .+. .+|.++..++.|+.+++.
T Consensus 232 ~l-------~~l~~L~~L~l~~N-~l~c~~~~~~~~~l~~L~~l~~~ 270 (487)
T 3oja_A 232 AL-------RFSQNLEHFDLRGN-GFHCGTLRDFFSKNQRVQTVAKQ 270 (487)
T ss_dssp TC-------CCCTTCCEEECTTC-CBCHHHHHHHHTTCHHHHHHHHH
T ss_pred hh-------ccCCCCCEEEcCCC-CCcCcchHHHHHhCCCCcEEecc
Confidence 54 45567777777774 333 455555666666666553
No 67
>2xwt_C Thyrotropin receptor; signaling protein-immune system complex, GPCR, graves' disea autoimmunity, receptor-autoantibody complex; HET: NAG BMA MAN; 1.90A {Homo sapiens} PDB: 3g04_C*
Probab=99.74 E-value=2.9e-17 Score=140.80 Aligned_cols=175 Identities=15% Similarity=0.166 Sum_probs=88.5
Q ss_pred CcccEEEEccCcchhchhh-hccCCCCCcEEEeeccCCcCccc-ccccCCCCCceEeccccCCCcCCCCCCCCCCCcc--
Q 018478 101 PSLKSLRVQGCSKLESIAE-TLDNSTSLETIHIFYCENMKILP-SGLHNLRQLQEISIEGCGNLESFPEGGLPCAKLK-- 176 (355)
Q Consensus 101 ~~L~~L~l~~~~~~~~~~~-~~~~l~~L~~L~l~~~~~~~~~~-~~~~~l~~L~~L~l~~~~~l~~~~~~~~~~~~L~-- 176 (355)
++|+.|++++|..++.+++ .+..+++|++|++++|..++.++ ..+..+++|+.|++++| .++.+|. +..+++|+
T Consensus 55 ~~L~~L~l~~n~~l~~i~~~~f~~l~~L~~L~l~~~n~l~~i~~~~f~~l~~L~~L~l~~n-~l~~lp~-~~~l~~L~~L 132 (239)
T 2xwt_C 55 PNISRIYVSIDVTLQQLESHSFYNLSKVTHIEIRNTRNLTYIDPDALKELPLLKFLGIFNT-GLKMFPD-LTKVYSTDIF 132 (239)
T ss_dssp TTCCEEEEECCSSCCEECTTTEESCTTCCEEEEEEETTCCEECTTSEECCTTCCEEEEEEE-CCCSCCC-CTTCCBCCSE
T ss_pred CCCcEEeCCCCCCcceeCHhHcCCCcCCcEEECCCCCCeeEcCHHHhCCCCCCCEEeCCCC-CCccccc-cccccccccc
Confidence 4555555555533443332 34555666666665522244443 34555666666666655 3444554 44555555
Q ss_pred -eEEEccccCcCcccc-cccCCCCCc-eEEEeecCcCCCCCCCCccEEEecCCcchhhhhhhhcccCCCCCccceeEecc
Q 018478 177 -EVVIRWCGRLEALPK-GLHNLKSLQ-KLTIGKGGLEEDGLPTNLHSLDIRGNMEIWKSMIEWGQGFHRFSSLRELRIEG 253 (355)
Q Consensus 177 -~L~l~~~~~~~~~p~-~l~~~~~L~-~L~l~~~~i~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~l~~L~~L~l~~ 253 (355)
.|++++|..++.+|. .+..+++|+ +|++ ++|... .++.. . +.. ++|++|++++
T Consensus 133 ~~L~l~~N~~l~~i~~~~~~~l~~L~~~L~l-------------------~~n~l~-~i~~~-~--~~~-~~L~~L~L~~ 188 (239)
T 2xwt_C 133 FILEITDNPYMTSIPVNAFQGLCNETLTLKL-------------------YNNGFT-SVQGY-A--FNG-TKLDAVYLNK 188 (239)
T ss_dssp EEEEEESCTTCCEECTTTTTTTBSSEEEEEC-------------------CSCCCC-EECTT-T--TTT-CEEEEEECTT
T ss_pred cEEECCCCcchhhcCcccccchhcceeEEEc-------------------CCCCCc-ccCHh-h--cCC-CCCCEEEcCC
Confidence 666666534444443 345555555 4444 332211 11111 1 223 5566666665
Q ss_pred cCCcccccCccccccCCCCCCC-CccceEEeccCCCcccccccCCCCCCccEEeeCCCC
Q 018478 254 CDDDMVSFPPEDIRMGTTLPLP-TSLTSLAIFSFPNLERLSSSIVDLQNLTSLYLVGCP 311 (355)
Q Consensus 254 ~~~~~~~~~~~~~~~~~~~~~~-~~L~~L~l~~~~~l~~l~~~~~~~~~L~~L~l~~~~ 311 (355)
+..++.++...+ ... ++|+.|++++ +.++.+|. ..+++|+.|++.++.
T Consensus 189 -n~~l~~i~~~~~------~~l~~~L~~L~l~~-N~l~~l~~--~~~~~L~~L~l~~~~ 237 (239)
T 2xwt_C 189 -NKYLTVIDKDAF------GGVYSGPSLLDVSQ-TSVTALPS--KGLEHLKELIARNTW 237 (239)
T ss_dssp -CTTCCEECTTTT------TTCSBCCSEEECTT-CCCCCCCC--TTCTTCSEEECTTC-
T ss_pred -CCCcccCCHHHh------hccccCCcEEECCC-CccccCCh--hHhccCceeeccCcc
Confidence 223555544332 334 5666777766 56666665 356777777776653
No 68
>3oja_A Leucine-rich immune molecule 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae}
Probab=99.74 E-value=1.3e-17 Score=157.86 Aligned_cols=209 Identities=14% Similarity=0.150 Sum_probs=113.2
Q ss_pred CcccEEEEccCcchhch-hhhccCCCCCcEEEeeccCCcCcccccccCCCCCceEeccccCCCcCCCCCCCCCCCcceEE
Q 018478 101 PSLKSLRVQGCSKLESI-AETLDNSTSLETIHIFYCENMKILPSGLHNLRQLQEISIEGCGNLESFPEGGLPCAKLKEVV 179 (355)
Q Consensus 101 ~~L~~L~l~~~~~~~~~-~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~l~~~~~~~~~~~~L~~L~ 179 (355)
++|+.|++++|. +..+ |..+..+++|++|++++|. +...+. +..+++|+.|++++| .++.+|. .++|+.|+
T Consensus 34 ~~L~~L~Ls~n~-l~~~~~~~~~~l~~L~~L~Ls~N~-l~~~~~-l~~l~~L~~L~Ls~N-~l~~l~~----~~~L~~L~ 105 (487)
T 3oja_A 34 WNVKELDLSGNP-LSQISAADLAPFTKLELLNLSSNV-LYETLD-LESLSTLRTLDLNNN-YVQELLV----GPSIETLH 105 (487)
T ss_dssp GGCCEEECCSSC-CCCCCGGGGTTCTTCCEEECTTSC-CEEEEE-CTTCTTCCEEECCSS-EEEEEEE----CTTCCEEE
T ss_pred CCccEEEeeCCc-CCCCCHHHHhCCCCCCEEEeeCCC-CCCCcc-cccCCCCCEEEecCC-cCCCCCC----CCCcCEEE
Confidence 456666666655 3333 3455566666666666655 332222 555666666666665 3444432 24666666
Q ss_pred EccccCcCcccccccCCCCCceEEEeecCcCC-----CCCCCCccEEEecCCcchhhhhhhhcccCCCCCccceeEeccc
Q 018478 180 IRWCGRLEALPKGLHNLKSLQKLTIGKGGLEE-----DGLPTNLHSLDIRGNMEIWKSMIEWGQGFHRFSSLRELRIEGC 254 (355)
Q Consensus 180 l~~~~~~~~~p~~l~~~~~L~~L~l~~~~i~~-----~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~l~~L~~L~l~~~ 254 (355)
+++|. ++.++. ..+++|+.|+++.+.+.. .+.+++|+.|++++|......+..+ ...+++|++|++++
T Consensus 106 L~~N~-l~~~~~--~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~l---~~~l~~L~~L~Ls~- 178 (487)
T 3oja_A 106 AANNN-ISRVSC--SRGQGKKNIYLANNKITMLRDLDEGCRSRVQYLDLKLNEIDTVNFAEL---AASSDTLEHLNLQY- 178 (487)
T ss_dssp CCSSC-CCCEEE--CCCSSCEEEECCSSCCCSGGGBCGGGGSSEEEEECTTSCCCEEEGGGG---GGGTTTCCEEECTT-
T ss_pred CcCCc-CCCCCc--cccCCCCEEECCCCCCCCCCchhhcCCCCCCEEECCCCCCCCcChHHH---hhhCCcccEEecCC-
Confidence 66643 233222 234556666665333322 1234566666666665333222211 23566677777766
Q ss_pred CCcccccCccccccCCCCCCCCccceEEeccCCCcccccccCCCCCCccEEeeCCCCCCcccCCC-CCCCCccEEEecCC
Q 018478 255 DDDMVSFPPEDIRMGTTLPLPTSLTSLAIFSFPNLERLSSSIVDLQNLTSLYLVGCPKLKYFPEK-GLPSSLLELWIGGC 333 (355)
Q Consensus 255 ~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~l~~~~~~~~~L~~L~l~~~~~l~~~~~~-~~~~~L~~L~l~~c 333 (355)
+.+..++... .+++|+.|++++ +.++.+|..+..+++|+.|++++| +++.+|.. ..+++|++|++.+|
T Consensus 179 -N~l~~~~~~~--------~l~~L~~L~Ls~-N~l~~~~~~~~~l~~L~~L~Ls~N-~l~~lp~~l~~l~~L~~L~l~~N 247 (487)
T 3oja_A 179 -NFIYDVKGQV--------VFAKLKTLDLSS-NKLAFMGPEFQSAAGVTWISLRNN-KLVLIEKALRFSQNLEHFDLRGN 247 (487)
T ss_dssp -SCCCEEECCC--------CCTTCCEEECCS-SCCCEECGGGGGGTTCSEEECTTS-CCCEECTTCCCCTTCCEEECTTC
T ss_pred -Cccccccccc--------cCCCCCEEECCC-CCCCCCCHhHcCCCCccEEEecCC-cCcccchhhccCCCCCEEEcCCC
Confidence 3444443322 456677777776 466666665666677777777766 56666553 22566777777666
Q ss_pred ch
Q 018478 334 PL 335 (355)
Q Consensus 334 ~~ 335 (355)
+.
T Consensus 248 ~l 249 (487)
T 3oja_A 248 GF 249 (487)
T ss_dssp CB
T ss_pred CC
Confidence 53
No 69
>4ay9_X Follicle-stimulating hormone receptor; hormone-receptor complex, leucine-rich repeats, LRR, GPCR; HET: TYS NAG; 2.50A {Homo sapiens} PDB: 1xwd_C*
Probab=99.73 E-value=1.3e-16 Score=144.74 Aligned_cols=238 Identities=20% Similarity=0.174 Sum_probs=129.5
Q ss_pred cEEeecccccCcccccCccCCCcceEecccCccccccccccCcCCCCCCCccccccccccEEEecCCCccchhccccccc
Q 018478 9 EILEIWSCRSLTYLAAVQLPRSLKRLDIQCCSNIRTLTMEEGIQSSSSSSSRRYTSYLLEELCISSCRSLTSIFSKNELS 88 (355)
Q Consensus 9 ~~L~l~~~~~l~~l~~~~~~~~L~~L~l~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~~~~~n~~~ 88 (355)
+.++.++ .+++++| ..+++++++|++++ ++++.++... |..+++|++|+++++...+.+
T Consensus 12 ~~v~C~~-~~Lt~iP-~~l~~~l~~L~Ls~-N~i~~i~~~~-----------f~~l~~L~~L~Ls~N~i~~~i------- 70 (350)
T 4ay9_X 12 RVFLCQE-SKVTEIP-SDLPRNAIELRFVL-TKLRVIQKGA-----------FSGFGDLEKIEISQNDVLEVI------- 70 (350)
T ss_dssp TEEEEES-TTCCSCC-TTCCTTCSEEEEES-CCCSEECTTS-----------STTCTTCCEEEEECCTTCCEE-------
T ss_pred CEEEecC-CCCCccC-cCcCCCCCEEEccC-CcCCCcCHHH-----------HcCCCCCCEEECcCCCCCCcc-------
Confidence 3444442 3566666 34556777777777 5567666543 455677777777765444444
Q ss_pred hhccccccC--CCCCcccEEEEccCcchhch-hhhccCCCCCcEEEeeccCCcCccc-ccccCCCCCceEeccccCCCcC
Q 018478 89 ATLESLEVG--NLPPSLKSLRVQGCSKLESI-AETLDNSTSLETIHIFYCENMKILP-SGLHNLRQLQEISIEGCGNLES 164 (355)
Q Consensus 89 ~~~~~~~~~--~~~~~L~~L~l~~~~~~~~~-~~~~~~l~~L~~L~l~~~~~~~~~~-~~~~~l~~L~~L~l~~~~~l~~ 164 (355)
+.. ..+++++.+....+..+..+ |..+..+++|++|++++|. +..++ ..+....++..+++.++..+..
T Consensus 71 ------~~~~f~~L~~l~~~l~~~~N~l~~l~~~~f~~l~~L~~L~l~~n~-l~~~~~~~~~~~~~l~~l~l~~~~~i~~ 143 (350)
T 4ay9_X 71 ------EADVFSNLPKLHEIRIEKANNLLYINPEAFQNLPNLQYLLISNTG-IKHLPDVHKIHSLQKVLLDIQDNINIHT 143 (350)
T ss_dssp ------CTTSBCSCTTCCEEEEEEETTCCEECTTSBCCCTTCCEEEEEEEC-CSSCCCCTTCCBSSCEEEEEESCTTCCE
T ss_pred ------ChhHhhcchhhhhhhcccCCcccccCchhhhhccccccccccccc-cccCCchhhcccchhhhhhhcccccccc
Confidence 322 22234444333322225554 3445666677777766665 44333 2333344555566655444555
Q ss_pred CCCC-CCCC-CCcceEEEccccCcCcccccccCCCCCceEEEeecCcCCCCCCCCccEEEecCCcchhhhhhhhcccCCC
Q 018478 165 FPEG-GLPC-AKLKEVVIRWCGRLEALPKGLHNLKSLQKLTIGKGGLEEDGLPTNLHSLDIRGNMEIWKSMIEWGQGFHR 242 (355)
Q Consensus 165 ~~~~-~~~~-~~L~~L~l~~~~~~~~~p~~l~~~~~L~~L~l~~~~i~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~ 242 (355)
++.. +..+ ..++.|++++| .++.++....... +++.+++.++..++.++.+. +..
T Consensus 144 l~~~~f~~~~~~l~~L~L~~N-~i~~i~~~~f~~~-------------------~L~~l~l~~~n~l~~i~~~~---f~~ 200 (350)
T 4ay9_X 144 IERNSFVGLSFESVILWLNKN-GIQEIHNSAFNGT-------------------QLDELNLSDNNNLEELPNDV---FHG 200 (350)
T ss_dssp ECTTSSTTSBSSCEEEECCSS-CCCEECTTSSTTE-------------------EEEEEECTTCTTCCCCCTTT---TTT
T ss_pred ccccchhhcchhhhhhccccc-cccCCChhhcccc-------------------chhHHhhccCCcccCCCHHH---hcc
Confidence 4432 2222 34555666653 3444443333333 45555555555455444332 566
Q ss_pred CCccceeEecccCCcccccCccccccCCCCCCCCccceEEeccCCCcccccccCCCCCCccEEeeCC
Q 018478 243 FSSLRELRIEGCDDDMVSFPPEDIRMGTTLPLPTSLTSLAIFSFPNLERLSSSIVDLQNLTSLYLVG 309 (355)
Q Consensus 243 l~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~l~~~~~~~~~L~~L~l~~ 309 (355)
+++|++|++++ +.++.+|.. .+.+|+.|.+.++++++.+|. +..+++|+.+++.+
T Consensus 201 l~~L~~LdLs~--N~l~~lp~~---------~~~~L~~L~~l~~~~l~~lP~-l~~l~~L~~l~l~~ 255 (350)
T 4ay9_X 201 ASGPVILDISR--TRIHSLPSY---------GLENLKKLRARSTYNLKKLPT-LEKLVALMEASLTY 255 (350)
T ss_dssp EECCSEEECTT--SCCCCCCSS---------SCTTCCEEECTTCTTCCCCCC-TTTCCSCCEEECSC
T ss_pred CcccchhhcCC--CCcCccChh---------hhccchHhhhccCCCcCcCCC-chhCcChhhCcCCC
Confidence 77777777776 566677652 245677777776677777763 56677777777654
No 70
>1p9a_G Platelet glycoprotein IB alpha chain precursor; platelet receptors, glycocalicin, leucine rich repeats, BLOO clotting; HET: NAG BMA; 1.70A {Homo sapiens} SCOP: c.10.2.7 PDB: 1ook_G* 1qyy_A* 3pmh_G* 1m0z_A 1m10_B 1sq0_B 1gwb_A* 1p8v_A* 1u0n_D 3p72_A
Probab=99.73 E-value=1.7e-16 Score=139.99 Aligned_cols=192 Identities=19% Similarity=0.175 Sum_probs=135.4
Q ss_pred cccccccEEEecCCCccchhccccccchhccccccCCCCCcccEEEEccCcchhch-hhhccCCCCCcEEEeeccCCcCc
Q 018478 62 YTSYLLEELCISSCRSLTSIFSKNELSATLESLEVGNLPPSLKSLRVQGCSKLESI-AETLDNSTSLETIHIFYCENMKI 140 (355)
Q Consensus 62 ~~~~~L~~L~l~~~~~l~~~~~~n~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~-~~~~~~l~~L~~L~l~~~~~~~~ 140 (355)
..+++++++++.+. .++.+ |.. .+++++.|++++|. +..+ +..+..+++|++|++++|. ++.
T Consensus 7 ~~l~~l~~l~~~~~-~l~~i-------------p~~-~~~~l~~L~L~~N~-l~~~~~~~~~~l~~L~~L~L~~n~-l~~ 69 (290)
T 1p9a_G 7 SKVASHLEVNCDKR-NLTAL-------------PPD-LPKDTTILHLSENL-LYTFSLATLMPYTRLTQLNLDRAE-LTK 69 (290)
T ss_dssp ECSTTCCEEECTTS-CCSSC-------------CSC-CCTTCCEEECTTSC-CSEEEGGGGTTCTTCCEEECTTSC-CCE
T ss_pred cccCCccEEECCCC-CCCcC-------------CCC-CCCCCCEEEcCCCc-CCccCHHHhhcCCCCCEEECCCCc-cCc
Confidence 44778899988874 56666 543 44789999999988 5544 5678889999999999987 666
Q ss_pred ccccccCCCCCceEeccccCCCcCCCCCCCCCCCcceEEEccccCcCccc-ccccCCCCCceEEEeecCcC---C--CCC
Q 018478 141 LPSGLHNLRQLQEISIEGCGNLESFPEGGLPCAKLKEVVIRWCGRLEALP-KGLHNLKSLQKLTIGKGGLE---E--DGL 214 (355)
Q Consensus 141 ~~~~~~~l~~L~~L~l~~~~~l~~~~~~~~~~~~L~~L~l~~~~~~~~~p-~~l~~~~~L~~L~l~~~~i~---~--~~~ 214 (355)
++.. +.+++|+.|++++| .++.+|..+..+++|+.|++++|. ++.+| ..+..+++|++|+++.+.+. . ...
T Consensus 70 ~~~~-~~l~~L~~L~Ls~N-~l~~l~~~~~~l~~L~~L~l~~N~-l~~l~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~ 146 (290)
T 1p9a_G 70 LQVD-GTLPVLGTLDLSHN-QLQSLPLLGQTLPALTVLDVSFNR-LTSLPLGALRGLGELQELYLKGNELKTLPPGLLTP 146 (290)
T ss_dssp EECC-SCCTTCCEEECCSS-CCSSCCCCTTTCTTCCEEECCSSC-CCCCCSSTTTTCTTCCEEECTTSCCCCCCTTTTTT
T ss_pred ccCC-CCCCcCCEEECCCC-cCCcCchhhccCCCCCEEECCCCc-CcccCHHHHcCCCCCCEEECCCCCCCccChhhccc
Confidence 6553 78899999999987 678888888889999999999964 45554 56788888888888733332 2 123
Q ss_pred CCCccEEEecCCcchhhhhhhhcccCCCCCccceeEecccCCcccccCccccccCCCCCCCCccceEEeccC
Q 018478 215 PTNLHSLDIRGNMEIWKSMIEWGQGFHRFSSLRELRIEGCDDDMVSFPPEDIRMGTTLPLPTSLTSLAIFSF 286 (355)
Q Consensus 215 ~~~L~~L~l~~~~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~ 286 (355)
+++|+.|++++|... .++... +..+++|++|++++ +.++.+|... ....+|+.++++++
T Consensus 147 l~~L~~L~L~~N~l~-~l~~~~---~~~l~~L~~L~L~~--N~l~~ip~~~-------~~~~~L~~l~L~~N 205 (290)
T 1p9a_G 147 TPKLEKLSLANNNLT-ELPAGL---LNGLENLDTLLLQE--NSLYTIPKGF-------FGSHLLPFAFLHGN 205 (290)
T ss_dssp CTTCCEEECTTSCCS-CCCTTT---TTTCTTCCEEECCS--SCCCCCCTTT-------TTTCCCSEEECCSC
T ss_pred ccCCCEEECCCCcCC-ccCHHH---hcCcCCCCEEECCC--CcCCccChhh-------cccccCCeEEeCCC
Confidence 466777777766533 233221 45666777777766 5566666655 24446666776653
No 71
>4ay9_X Follicle-stimulating hormone receptor; hormone-receptor complex, leucine-rich repeats, LRR, GPCR; HET: TYS NAG; 2.50A {Homo sapiens} PDB: 1xwd_C*
Probab=99.72 E-value=3.4e-16 Score=141.94 Aligned_cols=220 Identities=22% Similarity=0.214 Sum_probs=167.8
Q ss_pred ccCCCCCcccEEEEccCcchhchhh-hccCCCCCcEEEeeccCCcCcccc-cccCCCCCceEeccccCCCcCCC-CCCCC
Q 018478 95 EVGNLPPSLKSLRVQGCSKLESIAE-TLDNSTSLETIHIFYCENMKILPS-GLHNLRQLQEISIEGCGNLESFP-EGGLP 171 (355)
Q Consensus 95 ~~~~~~~~L~~L~l~~~~~~~~~~~-~~~~l~~L~~L~l~~~~~~~~~~~-~~~~l~~L~~L~l~~~~~l~~~~-~~~~~ 171 (355)
|. ..+++++.|++++|. ++.+|+ .|.++++|++|++++|...+.++. .+.++++++.+...++..+..++ ..+..
T Consensus 25 P~-~l~~~l~~L~Ls~N~-i~~i~~~~f~~l~~L~~L~Ls~N~i~~~i~~~~f~~L~~l~~~l~~~~N~l~~l~~~~f~~ 102 (350)
T 4ay9_X 25 PS-DLPRNAIELRFVLTK-LRVIQKGAFSGFGDLEKIEISQNDVLEVIEADVFSNLPKLHEIRIEKANNLLYINPEAFQN 102 (350)
T ss_dssp CT-TCCTTCSEEEEESCC-CSEECTTSSTTCTTCCEEEEECCTTCCEECTTSBCSCTTCCEEEEEEETTCCEECTTSBCC
T ss_pred Cc-CcCCCCCEEEccCCc-CCCcCHHHHcCCCCCCEEECcCCCCCCccChhHhhcchhhhhhhcccCCcccccCchhhhh
Confidence 64 345789999999987 888875 578899999999999986676663 56788888876655555777775 56677
Q ss_pred CCCcceEEEccccCcCccc-ccccCCCCCceEEEe----ecCcCCC---CCCCCccEEEecCCcchhhhhhhhcccCCCC
Q 018478 172 CAKLKEVVIRWCGRLEALP-KGLHNLKSLQKLTIG----KGGLEED---GLPTNLHSLDIRGNMEIWKSMIEWGQGFHRF 243 (355)
Q Consensus 172 ~~~L~~L~l~~~~~~~~~p-~~l~~~~~L~~L~l~----~~~i~~~---~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~l 243 (355)
+++|+.|++++|. ++.+| ..+....++..+++. ...++.. .....++.|++++|... .++.. +...
T Consensus 103 l~~L~~L~l~~n~-l~~~~~~~~~~~~~l~~l~l~~~~~i~~l~~~~f~~~~~~l~~L~L~~N~i~-~i~~~----~f~~ 176 (350)
T 4ay9_X 103 LPNLQYLLISNTG-IKHLPDVHKIHSLQKVLLDIQDNINIHTIERNSFVGLSFESVILWLNKNGIQ-EIHNS----AFNG 176 (350)
T ss_dssp CTTCCEEEEEEEC-CSSCCCCTTCCBSSCEEEEEESCTTCCEECTTSSTTSBSSCEEEECCSSCCC-EECTT----SSTT
T ss_pred ccccccccccccc-cccCCchhhcccchhhhhhhccccccccccccchhhcchhhhhhcccccccc-CCChh----hccc
Confidence 9999999999964 45554 345566677778776 2233332 23357889999998743 34332 3355
Q ss_pred CccceeEecccCCcccccCccccccCCCCCCCCccceEEeccCCCcccccccCCCCCCccEEeeCCCCCCcccCCCCCCC
Q 018478 244 SSLRELRIEGCDDDMVSFPPEDIRMGTTLPLPTSLTSLAIFSFPNLERLSSSIVDLQNLTSLYLVGCPKLKYFPEKGLPS 323 (355)
Q Consensus 244 ~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~l~~~~~~~~~L~~L~l~~~~~l~~~~~~~~~~ 323 (355)
.+|+++++.+ ++.++.+|.+.+ ..+++|++|++++ +.++.+|. ..+.+|++|.+.++.+++.+|.-.-++
T Consensus 177 ~~L~~l~l~~-~n~l~~i~~~~f------~~l~~L~~LdLs~-N~l~~lp~--~~~~~L~~L~~l~~~~l~~lP~l~~l~ 246 (350)
T 4ay9_X 177 TQLDELNLSD-NNNLEELPNDVF------HGASGPVILDISR-TRIHSLPS--YGLENLKKLRARSTYNLKKLPTLEKLV 246 (350)
T ss_dssp EEEEEEECTT-CTTCCCCCTTTT------TTEECCSEEECTT-SCCCCCCS--SSCTTCCEEECTTCTTCCCCCCTTTCC
T ss_pred cchhHHhhcc-CCcccCCCHHHh------ccCcccchhhcCC-CCcCccCh--hhhccchHhhhccCCCcCcCCCchhCc
Confidence 7899999998 788999997653 5678999999999 68999997 668899999999999999999755579
Q ss_pred CccEEEecC
Q 018478 324 SLLELWIGG 332 (355)
Q Consensus 324 ~L~~L~l~~ 332 (355)
+|+.+++.+
T Consensus 247 ~L~~l~l~~ 255 (350)
T 4ay9_X 247 ALMEASLTY 255 (350)
T ss_dssp SCCEEECSC
T ss_pred ChhhCcCCC
Confidence 999999864
No 72
>1p9a_G Platelet glycoprotein IB alpha chain precursor; platelet receptors, glycocalicin, leucine rich repeats, BLOO clotting; HET: NAG BMA; 1.70A {Homo sapiens} SCOP: c.10.2.7 PDB: 1ook_G* 1qyy_A* 3pmh_G* 1m0z_A 1m10_B 1sq0_B 1gwb_A* 1p8v_A* 1u0n_D 3p72_A
Probab=99.72 E-value=1.6e-16 Score=140.21 Aligned_cols=194 Identities=23% Similarity=0.303 Sum_probs=148.8
Q ss_pred CCCCCCccEEeecccccCcccccCccCCCcceEecccCccccccccccCcCCCCCCCccccccccccEEEecCCCccchh
Q 018478 2 CDTNSSLEILEIWSCRSLTYLAAVQLPRSLKRLDIQCCSNIRTLTMEEGIQSSSSSSSRRYTSYLLEELCISSCRSLTSI 81 (355)
Q Consensus 2 ~~~~~~L~~L~l~~~~~l~~l~~~~~~~~L~~L~l~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~~ 81 (355)
++++++++++++.+ ..++.+| ..+++++++|++++ +.+..++... +..+++|++|+++++ .++.+
T Consensus 6 ~~~l~~l~~l~~~~-~~l~~ip-~~~~~~l~~L~L~~-N~l~~~~~~~-----------~~~l~~L~~L~L~~n-~l~~~ 70 (290)
T 1p9a_G 6 VSKVASHLEVNCDK-RNLTALP-PDLPKDTTILHLSE-NLLYTFSLAT-----------LMPYTRLTQLNLDRA-ELTKL 70 (290)
T ss_dssp EECSTTCCEEECTT-SCCSSCC-SCCCTTCCEEECTT-SCCSEEEGGG-----------GTTCTTCCEEECTTS-CCCEE
T ss_pred ccccCCccEEECCC-CCCCcCC-CCCCCCCCEEEcCC-CcCCccCHHH-----------hhcCCCCCEEECCCC-ccCcc
Confidence 35789999999985 5788887 44568999999999 4577666543 566899999999985 56666
Q ss_pred ccccccchhccccccCCCCCcccEEEEccCcchhchhhhccCCCCCcEEEeeccCCcCccc-ccccCCCCCceEeccccC
Q 018478 82 FSKNELSATLESLEVGNLPPSLKSLRVQGCSKLESIAETLDNSTSLETIHIFYCENMKILP-SGLHNLRQLQEISIEGCG 160 (355)
Q Consensus 82 ~~~n~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~-~~~~~l~~L~~L~l~~~~ 160 (355)
+....+++|+.|++++|. +..+|..+..+++|++|++++|. ++.++ ..+..+++|+.|++++|
T Consensus 71 -------------~~~~~l~~L~~L~Ls~N~-l~~l~~~~~~l~~L~~L~l~~N~-l~~l~~~~~~~l~~L~~L~L~~N- 134 (290)
T 1p9a_G 71 -------------QVDGTLPVLGTLDLSHNQ-LQSLPLLGQTLPALTVLDVSFNR-LTSLPLGALRGLGELQELYLKGN- 134 (290)
T ss_dssp -------------ECCSCCTTCCEEECCSSC-CSSCCCCTTTCTTCCEEECCSSC-CCCCCSSTTTTCTTCCEEECTTS-
T ss_pred -------------cCCCCCCcCCEEECCCCc-CCcCchhhccCCCCCEEECCCCc-CcccCHHHHcCCCCCCEEECCCC-
Confidence 555667899999999987 78888888889999999999988 55655 66888999999999997
Q ss_pred CCcCCCCC-CCCCCCcceEEEccccCcCcccc-cccCCCCCceEEEeecCcC---CC-CCCCCccEEEecCCc
Q 018478 161 NLESFPEG-GLPCAKLKEVVIRWCGRLEALPK-GLHNLKSLQKLTIGKGGLE---ED-GLPTNLHSLDIRGNM 227 (355)
Q Consensus 161 ~l~~~~~~-~~~~~~L~~L~l~~~~~~~~~p~-~l~~~~~L~~L~l~~~~i~---~~-~~~~~L~~L~l~~~~ 227 (355)
.++.+|.. +..+++|+.|++++| .++.+|. .+..+++|++|+++.+.+. .. ....+|+.+++.+|+
T Consensus 135 ~l~~~~~~~~~~l~~L~~L~L~~N-~l~~l~~~~~~~l~~L~~L~L~~N~l~~ip~~~~~~~~L~~l~L~~Np 206 (290)
T 1p9a_G 135 ELKTLPPGLLTPTPKLEKLSLANN-NLTELPAGLLNGLENLDTLLLQENSLYTIPKGFFGSHLLPFAFLHGNP 206 (290)
T ss_dssp CCCCCCTTTTTTCTTCCEEECTTS-CCSCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCCCSEEECCSCC
T ss_pred CCCccChhhcccccCCCEEECCCC-cCCccCHHHhcCcCCCCEEECCCCcCCccChhhcccccCCeEEeCCCC
Confidence 66677654 567899999999996 4566664 4577888888888744333 21 223567777777664
No 73
>2z62_A TOLL-like receptor 4, variable lymphocyte recepto; TLR, VLR hybrid, MD-2, LPS, glycoprotein response, inflammatory response, innate immunity; HET: NAG FUL BMA; 1.70A {Homo sapiens} PDB: 2z65_A* 3ul8_A* 3ula_A* 3ul7_A*
Probab=99.71 E-value=1.1e-16 Score=140.22 Aligned_cols=195 Identities=18% Similarity=0.209 Sum_probs=111.5
Q ss_pred CCCcccEEEEccCcchhchhh-hccCCCCCcEEEeeccCCcCccc-ccccCCCCCceEeccccCCCcCCC-CCCCCCCCc
Q 018478 99 LPPSLKSLRVQGCSKLESIAE-TLDNSTSLETIHIFYCENMKILP-SGLHNLRQLQEISIEGCGNLESFP-EGGLPCAKL 175 (355)
Q Consensus 99 ~~~~L~~L~l~~~~~~~~~~~-~~~~l~~L~~L~l~~~~~~~~~~-~~~~~l~~L~~L~l~~~~~l~~~~-~~~~~~~~L 175 (355)
.+++|+.|++++|. +..++. .+..+++|++|++++|. +..++ ..+..+++|+.|++++| .+..++ ..+..+++|
T Consensus 26 l~~~l~~L~ls~n~-l~~~~~~~~~~l~~L~~L~l~~n~-l~~~~~~~~~~l~~L~~L~L~~n-~l~~~~~~~~~~l~~L 102 (276)
T 2z62_A 26 LPFSTKNLDLSFNP-LRHLGSYSFFSFPELQVLDLSRCE-IQTIEDGAYQSLSHLSTLILTGN-PIQSLALGAFSGLSSL 102 (276)
T ss_dssp SCTTCCEEECTTCC-CCEECTTTTTTCTTCSEEECTTCC-CCEECTTTTTTCTTCCEEECTTC-CCCEECTTTTTTCTTC
T ss_pred CCCCccEEECCCCc-ccccCHhHhccccCCcEEECCCCc-CCccCHHHccCCcCCCEEECCCC-ccCccChhhhcCCccc
Confidence 34567888887776 555543 56777788888887776 44443 45677777888888776 344443 556667778
Q ss_pred ceEEEccccCcCcccccccCCCCCceEEEeecCcCC------CCCCCCccEEEecCCcchhhhhhhhcccCCCCCccc--
Q 018478 176 KEVVIRWCGRLEALPKGLHNLKSLQKLTIGKGGLEE------DGLPTNLHSLDIRGNMEIWKSMIEWGQGFHRFSSLR-- 247 (355)
Q Consensus 176 ~~L~l~~~~~~~~~p~~l~~~~~L~~L~l~~~~i~~------~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~l~~L~-- 247 (355)
+.|++++|......+..+..+++|++|+++.+.+.. ...+++|+.|++++|.... .+... +..+++|+
T Consensus 103 ~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~l~~~~~~l~~L~~L~Ls~N~l~~-~~~~~---~~~l~~L~~l 178 (276)
T 2z62_A 103 QKLVAVETNLASLENFPIGHLKTLKELNVAHNLIQSFKLPEYFSNLTNLEHLDLSSNKIQS-IYCTD---LRVLHQMPLL 178 (276)
T ss_dssp CEEECTTSCCCCSTTCCCTTCTTCCEEECCSSCCCCCCCCGGGGGCTTCCEEECCSSCCCE-ECGGG---GHHHHTCTTC
T ss_pred cEEECCCCCccccCchhcccCCCCCEEECcCCccceecCchhhccCCCCCEEECCCCCCCc-CCHHH---hhhhhhcccc
Confidence 888877754333222356666777777666333322 1233556666666654322 11111 22223333
Q ss_pred --eeEecccCCcccccCccccccCCCCCCCCccceEEeccCCCccccccc-CCCCCCccEEeeCCC
Q 018478 248 --ELRIEGCDDDMVSFPPEDIRMGTTLPLPTSLTSLAIFSFPNLERLSSS-IVDLQNLTSLYLVGC 310 (355)
Q Consensus 248 --~L~l~~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~l~~~-~~~~~~L~~L~l~~~ 310 (355)
+|++++ +.+..++... ....+|++|++++ +.++.+|.. +..+++|++|++++|
T Consensus 179 ~l~L~ls~--n~l~~~~~~~-------~~~~~L~~L~L~~-n~l~~~~~~~~~~l~~L~~L~l~~N 234 (276)
T 2z62_A 179 NLSLDLSL--NPMNFIQPGA-------FKEIRLKELALDT-NQLKSVPDGIFDRLTSLQKIWLHTN 234 (276)
T ss_dssp CEEEECCS--SCCCEECTTS-------SCSCCEEEEECCS-SCCSCCCTTTTTTCCSCCEEECCSS
T ss_pred ceeeecCC--CcccccCccc-------cCCCcccEEECCC-CceeecCHhHhcccccccEEEccCC
Confidence 566665 4555555444 2333666667666 456655543 355666666666665
No 74
>2o6q_A Variable lymphocyte receptor A; leucine-rich repeat protein, LRR, immune system; 2.50A {Eptatretus burgeri}
Probab=99.70 E-value=6.5e-16 Score=134.90 Aligned_cols=176 Identities=22% Similarity=0.272 Sum_probs=89.7
Q ss_pred CcccEEEEccCcchhchh-hhccCCCCCcEEEeeccCCcCcccc-cccCCCCCceEeccccCCCcCCCC-CCCCCCCcce
Q 018478 101 PSLKSLRVQGCSKLESIA-ETLDNSTSLETIHIFYCENMKILPS-GLHNLRQLQEISIEGCGNLESFPE-GGLPCAKLKE 177 (355)
Q Consensus 101 ~~L~~L~l~~~~~~~~~~-~~~~~l~~L~~L~l~~~~~~~~~~~-~~~~l~~L~~L~l~~~~~l~~~~~-~~~~~~~L~~ 177 (355)
++++.|++++|. +..++ ..+..+++|++|++++|. ++.++. .+..+++|+.|++++| .+..+|. .+..+++|+.
T Consensus 37 ~~l~~L~l~~n~-l~~~~~~~~~~l~~L~~L~l~~n~-l~~i~~~~~~~l~~L~~L~l~~n-~l~~~~~~~~~~l~~L~~ 113 (270)
T 2o6q_A 37 ADTKKLDLQSNK-LSSLPSKAFHRLTKLRLLYLNDNK-LQTLPAGIFKELKNLETLWVTDN-KLQALPIGVFDQLVNLAE 113 (270)
T ss_dssp TTCSEEECCSSC-CSCCCTTSSSSCTTCCEEECCSSC-CSCCCTTTTSSCTTCCEEECCSS-CCCCCCTTTTTTCSSCCE
T ss_pred CCCCEEECcCCC-CCeeCHHHhcCCCCCCEEECCCCc-cCeeChhhhcCCCCCCEEECCCC-cCCcCCHhHcccccCCCE
Confidence 455666665554 44443 245555566666655554 334432 2344555555555554 3344432 2344555555
Q ss_pred EEEccccCcCcccccccCCCCCceEEEeecCcCCCCCCCCccEEEecCCcchhhhhhhhcccCCCCCccceeEecccCCc
Q 018478 178 VVIRWCGRLEALPKGLHNLKSLQKLTIGKGGLEEDGLPTNLHSLDIRGNMEIWKSMIEWGQGFHRFSSLRELRIEGCDDD 257 (355)
Q Consensus 178 L~l~~~~~~~~~p~~l~~~~~L~~L~l~~~~i~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~ 257 (355)
|++++|......+..+..+ ++|+.|++++|... ..+.. . +..+++|++|++++ +.
T Consensus 114 L~l~~n~l~~~~~~~~~~l-------------------~~L~~L~Ls~n~l~-~~~~~-~--~~~l~~L~~L~L~~--n~ 168 (270)
T 2o6q_A 114 LRLDRNQLKSLPPRVFDSL-------------------TKLTYLSLGYNELQ-SLPKG-V--FDKLTSLKELRLYN--NQ 168 (270)
T ss_dssp EECCSSCCCCCCTTTTTTC-------------------TTCCEEECCSSCCC-CCCTT-T--TTTCTTCCEEECCS--SC
T ss_pred EECCCCccCeeCHHHhCcC-------------------cCCCEEECCCCcCC-ccCHh-H--ccCCcccceeEecC--Cc
Confidence 5555532221111223333 34444444554322 22221 1 55667777777776 45
Q ss_pred ccccCccccccCCCCCCCCccceEEeccCCCccccccc-CCCCCCccEEeeCCCC
Q 018478 258 MVSFPPEDIRMGTTLPLPTSLTSLAIFSFPNLERLSSS-IVDLQNLTSLYLVGCP 311 (355)
Q Consensus 258 ~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~l~~~-~~~~~~L~~L~l~~~~ 311 (355)
++.++...+ ...++|++|++++ +.++.++.. +..+++|++|++++|+
T Consensus 169 l~~~~~~~~------~~l~~L~~L~L~~-N~l~~~~~~~~~~l~~L~~L~l~~N~ 216 (270)
T 2o6q_A 169 LKRVPEGAF------DKLTELKTLKLDN-NQLKRVPEGAFDSLEKLKMLQLQENP 216 (270)
T ss_dssp CSCCCTTTT------TTCTTCCEEECCS-SCCSCCCTTTTTTCTTCCEEECCSSC
T ss_pred CcEeChhHh------ccCCCcCEEECCC-CcCCcCCHHHhccccCCCEEEecCCC
Confidence 555554321 3456777777776 456666543 4566777777777663
No 75
>1h6u_A Internalin H; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.8A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1
Probab=99.70 E-value=1e-16 Score=142.83 Aligned_cols=193 Identities=14% Similarity=0.189 Sum_probs=119.0
Q ss_pred cccccccEEEecCCCccchhccccccchhccccccCCCCCcccEEEEccCcchhchhhhccCCCCCcEEEeeccCCcCcc
Q 018478 62 YTSYLLEELCISSCRSLTSIFSKNELSATLESLEVGNLPPSLKSLRVQGCSKLESIAETLDNSTSLETIHIFYCENMKIL 141 (355)
Q Consensus 62 ~~~~~L~~L~l~~~~~l~~~~~~n~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~ 141 (355)
..+++|++|++.++ .++.+ +....+++|+.|++++|. +..+++ +..+++|++|++++|. +..+
T Consensus 38 ~~l~~L~~L~l~~~-~i~~l-------------~~~~~l~~L~~L~L~~n~-i~~~~~-~~~l~~L~~L~L~~n~-l~~~ 100 (308)
T 1h6u_A 38 ADLDGITTLSAFGT-GVTTI-------------EGVQYLNNLIGLELKDNQ-ITDLAP-LKNLTKITELELSGNP-LKNV 100 (308)
T ss_dssp HHHHTCCEEECTTS-CCCCC-------------TTGGGCTTCCEEECCSSC-CCCCGG-GTTCCSCCEEECCSCC-CSCC
T ss_pred HHcCCcCEEEeeCC-CccCc-------------hhhhccCCCCEEEccCCc-CCCChh-HccCCCCCEEEccCCc-CCCc
Confidence 34888888888876 44555 444455788888888876 666666 7778888888888877 6665
Q ss_pred cccccCCCCCceEeccccCCCcCCCCCCCCCCCcceEEEccccCcCcccccccCCCCCceEEEeecCcC---CCCCCCCc
Q 018478 142 PSGLHNLRQLQEISIEGCGNLESFPEGGLPCAKLKEVVIRWCGRLEALPKGLHNLKSLQKLTIGKGGLE---EDGLPTNL 218 (355)
Q Consensus 142 ~~~~~~l~~L~~L~l~~~~~l~~~~~~~~~~~~L~~L~l~~~~~~~~~p~~l~~~~~L~~L~l~~~~i~---~~~~~~~L 218 (355)
+ .+..+++|+.|++++| .++.++. +..+++|+.|++++|. ++.++. +..+++|+.|+++.+.+. ....+++|
T Consensus 101 ~-~~~~l~~L~~L~l~~n-~l~~~~~-l~~l~~L~~L~l~~n~-l~~~~~-l~~l~~L~~L~l~~n~l~~~~~l~~l~~L 175 (308)
T 1h6u_A 101 S-AIAGLQSIKTLDLTST-QITDVTP-LAGLSNLQVLYLDLNQ-ITNISP-LAGLTNLQYLSIGNAQVSDLTPLANLSKL 175 (308)
T ss_dssp G-GGTTCTTCCEEECTTS-CCCCCGG-GTTCTTCCEEECCSSC-CCCCGG-GGGCTTCCEEECCSSCCCCCGGGTTCTTC
T ss_pred h-hhcCCCCCCEEECCCC-CCCCchh-hcCCCCCCEEECCCCc-cCcCcc-ccCCCCccEEEccCCcCCCChhhcCCCCC
Confidence 4 5777888888888887 5566554 6667888888888853 444443 667777777766633222 23344555
Q ss_pred cEEEecCCcchhhhhhhhcccCCCCCccceeEecccCCcccccCccccccCCCCCCCCccceEEeccCCCccccc
Q 018478 219 HSLDIRGNMEIWKSMIEWGQGFHRFSSLRELRIEGCDDDMVSFPPEDIRMGTTLPLPTSLTSLAIFSFPNLERLS 293 (355)
Q Consensus 219 ~~L~l~~~~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~l~ 293 (355)
+.|++++|... ..+. +..+++|++|++++ +.+..+++ + ..+++|+.|++++ +.++..|
T Consensus 176 ~~L~l~~n~l~-~~~~-----l~~l~~L~~L~L~~--N~l~~~~~-l-------~~l~~L~~L~l~~-N~i~~~~ 233 (308)
T 1h6u_A 176 TTLKADDNKIS-DISP-----LASLPNLIEVHLKN--NQISDVSP-L-------ANTSNLFIVTLTN-QTITNQP 233 (308)
T ss_dssp CEEECCSSCCC-CCGG-----GGGCTTCCEEECTT--SCCCBCGG-G-------TTCTTCCEEEEEE-EEEECCC
T ss_pred CEEECCCCccC-cChh-----hcCCCCCCEEEccC--CccCcccc-c-------cCCCCCCEEEccC-CeeecCC
Confidence 56665555422 2221 34455555555555 33333332 2 2445555555555 3344333
No 76
>2z62_A TOLL-like receptor 4, variable lymphocyte recepto; TLR, VLR hybrid, MD-2, LPS, glycoprotein response, inflammatory response, innate immunity; HET: NAG FUL BMA; 1.70A {Homo sapiens} PDB: 2z65_A* 3ul8_A* 3ula_A* 3ul7_A*
Probab=99.69 E-value=3e-16 Score=137.45 Aligned_cols=210 Identities=21% Similarity=0.232 Sum_probs=131.4
Q ss_pred cCcccccCccCCCcceEecccCccccccccccCcCCCCCCCccccccccccEEEecCCCccchhccccccchhcccccc-
Q 018478 18 SLTYLAAVQLPRSLKRLDIQCCSNIRTLTMEEGIQSSSSSSSRRYTSYLLEELCISSCRSLTSIFSKNELSATLESLEV- 96 (355)
Q Consensus 18 ~l~~l~~~~~~~~L~~L~l~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~~~~~n~~~~~~~~~~~- 96 (355)
.++.+| ..++++|++|+++++ .++.++... +..+++|++|+++++ .++.+ +.
T Consensus 18 ~l~~ip-~~l~~~l~~L~ls~n-~l~~~~~~~-----------~~~l~~L~~L~l~~n-~l~~~-------------~~~ 70 (276)
T 2z62_A 18 NFYKIP-DNLPFSTKNLDLSFN-PLRHLGSYS-----------FFSFPELQVLDLSRC-EIQTI-------------EDG 70 (276)
T ss_dssp CCSSCC-SSSCTTCCEEECTTC-CCCEECTTT-----------TTTCTTCSEEECTTC-CCCEE-------------CTT
T ss_pred CccccC-CCCCCCccEEECCCC-cccccCHhH-----------hccccCCcEEECCCC-cCCcc-------------CHH
Confidence 355565 345678999999884 577666533 456888999999876 44444 32
Q ss_pred -CCCCCcccEEEEccCcchhchh-hhccCCCCCcEEEeeccCCcCccc-ccccCCCCCceEeccccCCCcC--CCCCCCC
Q 018478 97 -GNLPPSLKSLRVQGCSKLESIA-ETLDNSTSLETIHIFYCENMKILP-SGLHNLRQLQEISIEGCGNLES--FPEGGLP 171 (355)
Q Consensus 97 -~~~~~~L~~L~l~~~~~~~~~~-~~~~~l~~L~~L~l~~~~~~~~~~-~~~~~l~~L~~L~l~~~~~l~~--~~~~~~~ 171 (355)
...+++|+.|++++|. +..++ ..+..+++|++|++++|. +..++ ..++.+++|+.|++++| .+.. +|..+..
T Consensus 71 ~~~~l~~L~~L~L~~n~-l~~~~~~~~~~l~~L~~L~l~~n~-l~~~~~~~~~~l~~L~~L~l~~n-~l~~~~l~~~~~~ 147 (276)
T 2z62_A 71 AYQSLSHLSTLILTGNP-IQSLALGAFSGLSSLQKLVAVETN-LASLENFPIGHLKTLKELNVAHN-LIQSFKLPEYFSN 147 (276)
T ss_dssp TTTTCTTCCEEECTTCC-CCEECTTTTTTCTTCCEEECTTSC-CCCSTTCCCTTCTTCCEEECCSS-CCCCCCCCGGGGG
T ss_pred HccCCcCCCEEECCCCc-cCccChhhhcCCccccEEECCCCC-ccccCchhcccCCCCCEEECcCC-ccceecCchhhcc
Confidence 2445788999998887 55444 567788889999888877 44443 36778888888888887 4444 5667777
Q ss_pred CCCcceEEEccccCcCcccccccCCCCCceEEEeecCcCCCCCCCCccEEEecCCcchhhhhhhhcccCCCCCccceeEe
Q 018478 172 CAKLKEVVIRWCGRLEALPKGLHNLKSLQKLTIGKGGLEEDGLPTNLHSLDIRGNMEIWKSMIEWGQGFHRFSSLRELRI 251 (355)
Q Consensus 172 ~~~L~~L~l~~~~~~~~~p~~l~~~~~L~~L~l~~~~i~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~l~~L~~L~l 251 (355)
+++|+.|++++|......+..+..+++|+.+.+ .|++++|.... .+.. .....+|++|++
T Consensus 148 l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~l~l---------------~L~ls~n~l~~-~~~~----~~~~~~L~~L~L 207 (276)
T 2z62_A 148 LTNLEHLDLSSNKIQSIYCTDLRVLHQMPLLNL---------------SLDLSLNPMNF-IQPG----AFKEIRLKELAL 207 (276)
T ss_dssp CTTCCEEECCSSCCCEECGGGGHHHHTCTTCCE---------------EEECCSSCCCE-ECTT----SSCSCCEEEEEC
T ss_pred CCCCCEEECCCCCCCcCCHHHhhhhhhccccce---------------eeecCCCcccc-cCcc----ccCCCcccEEEC
Confidence 888888888886433333345666655553221 34445544221 2211 122235666666
Q ss_pred cccCCcccccCccccccCCCCCCCCccceEEecc
Q 018478 252 EGCDDDMVSFPPEDIRMGTTLPLPTSLTSLAIFS 285 (355)
Q Consensus 252 ~~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~ 285 (355)
++ +.++.++.+.+ ...++|++|++++
T Consensus 208 ~~--n~l~~~~~~~~------~~l~~L~~L~l~~ 233 (276)
T 2z62_A 208 DT--NQLKSVPDGIF------DRLTSLQKIWLHT 233 (276)
T ss_dssp CS--SCCSCCCTTTT------TTCCSCCEEECCS
T ss_pred CC--CceeecCHhHh------cccccccEEEccC
Confidence 66 34555554332 3455666666665
No 77
>2o6q_A Variable lymphocyte receptor A; leucine-rich repeat protein, LRR, immune system; 2.50A {Eptatretus burgeri}
Probab=99.69 E-value=1.2e-15 Score=133.19 Aligned_cols=168 Identities=22% Similarity=0.321 Sum_probs=101.0
Q ss_pred CCccEEeecccccCcccccCccCCCcceEecccCccccccccccCcCCCCCCCccccccccccEEEecCCCccchhcccc
Q 018478 6 SSLEILEIWSCRSLTYLAAVQLPRSLKRLDIQCCSNIRTLTMEEGIQSSSSSSSRRYTSYLLEELCISSCRSLTSIFSKN 85 (355)
Q Consensus 6 ~~L~~L~l~~~~~l~~l~~~~~~~~L~~L~l~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~~~~~n 85 (355)
+..+.+++++ ..++.+| ..+++++++|+++++ .+..++... +..+++|++|+++++ .++.+
T Consensus 16 ~~~~~l~~~~-~~l~~ip-~~~~~~l~~L~l~~n-~l~~~~~~~-----------~~~l~~L~~L~l~~n-~l~~i---- 76 (270)
T 2o6q_A 16 NNKNSVDCSS-KKLTAIP-SNIPADTKKLDLQSN-KLSSLPSKA-----------FHRLTKLRLLYLNDN-KLQTL---- 76 (270)
T ss_dssp TTTTEEECTT-SCCSSCC-SCCCTTCSEEECCSS-CCSCCCTTS-----------SSSCTTCCEEECCSS-CCSCC----
T ss_pred CCCCEEEccC-CCCCccC-CCCCCCCCEEECcCC-CCCeeCHHH-----------hcCCCCCCEEECCCC-ccCee----
Confidence 4566777764 4566665 345577777777773 466555432 455777777777764 34444
Q ss_pred ccchhccccccC--CCCCcccEEEEccCcchhchh-hhccCCCCCcEEEeeccCCcCcc-cccccCCCCCceEeccccCC
Q 018478 86 ELSATLESLEVG--NLPPSLKSLRVQGCSKLESIA-ETLDNSTSLETIHIFYCENMKIL-PSGLHNLRQLQEISIEGCGN 161 (355)
Q Consensus 86 ~~~~~~~~~~~~--~~~~~L~~L~l~~~~~~~~~~-~~~~~l~~L~~L~l~~~~~~~~~-~~~~~~l~~L~~L~l~~~~~ 161 (355)
+.. ..+++|++|++++|. +..++ ..+..+++|++|++++|. +..+ +..+..+++|+.|++++| .
T Consensus 77 ---------~~~~~~~l~~L~~L~l~~n~-l~~~~~~~~~~l~~L~~L~l~~n~-l~~~~~~~~~~l~~L~~L~Ls~n-~ 144 (270)
T 2o6q_A 77 ---------PAGIFKELKNLETLWVTDNK-LQALPIGVFDQLVNLAELRLDRNQ-LKSLPPRVFDSLTKLTYLSLGYN-E 144 (270)
T ss_dssp ---------CTTTTSSCTTCCEEECCSSC-CCCCCTTTTTTCSSCCEEECCSSC-CCCCCTTTTTTCTTCCEEECCSS-C
T ss_pred ---------ChhhhcCCCCCCEEECCCCc-CCcCCHhHcccccCCCEEECCCCc-cCeeCHHHhCcCcCCCEEECCCC-c
Confidence 332 334677777777776 55544 345667777777777766 4333 344566777777777776 4
Q ss_pred CcCCCCC-CCCCCCcceEEEccccCcCccc-ccccCCCCCceEEEe
Q 018478 162 LESFPEG-GLPCAKLKEVVIRWCGRLEALP-KGLHNLKSLQKLTIG 205 (355)
Q Consensus 162 l~~~~~~-~~~~~~L~~L~l~~~~~~~~~p-~~l~~~~~L~~L~l~ 205 (355)
++.+|.. +..+++|+.|++++|. ++.++ ..+..+++|++|+++
T Consensus 145 l~~~~~~~~~~l~~L~~L~L~~n~-l~~~~~~~~~~l~~L~~L~L~ 189 (270)
T 2o6q_A 145 LQSLPKGVFDKLTSLKELRLYNNQ-LKRVPEGAFDKLTELKTLKLD 189 (270)
T ss_dssp CCCCCTTTTTTCTTCCEEECCSSC-CSCCCTTTTTTCTTCCEEECC
T ss_pred CCccCHhHccCCcccceeEecCCc-CcEeChhHhccCCCcCEEECC
Confidence 5555543 4556777777777653 33333 345556655555554
No 78
>1h6u_A Internalin H; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.8A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1
Probab=99.68 E-value=2.6e-16 Score=140.12 Aligned_cols=192 Identities=17% Similarity=0.210 Sum_probs=152.3
Q ss_pred CCcccEEEEccCcchhchhhhccCCCCCcEEEeeccCCcCcccccccCCCCCceEeccccCCCcCCCCCCCCCCCcceEE
Q 018478 100 PPSLKSLRVQGCSKLESIAETLDNSTSLETIHIFYCENMKILPSGLHNLRQLQEISIEGCGNLESFPEGGLPCAKLKEVV 179 (355)
Q Consensus 100 ~~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~l~~~~~~~~~~~~L~~L~ 179 (355)
+++|+.|++++|. +..++ .+..+++|++|++++|. +..++. +..+++|+.|++++| .++.++ .+..+++|+.|+
T Consensus 40 l~~L~~L~l~~~~-i~~l~-~~~~l~~L~~L~L~~n~-i~~~~~-~~~l~~L~~L~L~~n-~l~~~~-~~~~l~~L~~L~ 113 (308)
T 1h6u_A 40 LDGITTLSAFGTG-VTTIE-GVQYLNNLIGLELKDNQ-ITDLAP-LKNLTKITELELSGN-PLKNVS-AIAGLQSIKTLD 113 (308)
T ss_dssp HHTCCEEECTTSC-CCCCT-TGGGCTTCCEEECCSSC-CCCCGG-GTTCCSCCEEECCSC-CCSCCG-GGTTCTTCCEEE
T ss_pred cCCcCEEEeeCCC-ccCch-hhhccCCCCEEEccCCc-CCCChh-HccCCCCCEEEccCC-cCCCch-hhcCCCCCCEEE
Confidence 4789999999987 77776 57789999999999987 777766 889999999999998 567665 577789999999
Q ss_pred EccccCcCcccccccCCCCCceEEEeecCcC---CCCCCCCccEEEecCCcchhhhhhhhcccCCCCCccceeEecccCC
Q 018478 180 IRWCGRLEALPKGLHNLKSLQKLTIGKGGLE---EDGLPTNLHSLDIRGNMEIWKSMIEWGQGFHRFSSLRELRIEGCDD 256 (355)
Q Consensus 180 l~~~~~~~~~p~~l~~~~~L~~L~l~~~~i~---~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~ 256 (355)
+++|. ++.++ .+..+++|++|+++.+.+. ....+++|+.|++++|... ..+. +..+++|++|++++ +
T Consensus 114 l~~n~-l~~~~-~l~~l~~L~~L~l~~n~l~~~~~l~~l~~L~~L~l~~n~l~-~~~~-----l~~l~~L~~L~l~~--n 183 (308)
T 1h6u_A 114 LTSTQ-ITDVT-PLAGLSNLQVLYLDLNQITNISPLAGLTNLQYLSIGNAQVS-DLTP-----LANLSKLTTLKADD--N 183 (308)
T ss_dssp CTTSC-CCCCG-GGTTCTTCCEEECCSSCCCCCGGGGGCTTCCEEECCSSCCC-CCGG-----GTTCTTCCEEECCS--S
T ss_pred CCCCC-CCCch-hhcCCCCCCEEECCCCccCcCccccCCCCccEEEccCCcCC-CChh-----hcCCCCCCEEECCC--C
Confidence 99964 56665 4889999999999844443 3456789999999998643 3332 67889999999998 5
Q ss_pred cccccCccccccCCCCCCCCccceEEeccCCCcccccccCCCCCCccEEeeCCCCCCcccCC
Q 018478 257 DMVSFPPEDIRMGTTLPLPTSLTSLAIFSFPNLERLSSSIVDLQNLTSLYLVGCPKLKYFPE 318 (355)
Q Consensus 257 ~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~l~~~~~~~~~L~~L~l~~~~~l~~~~~ 318 (355)
.+..++. + ..+++|++|++++ +.++.++. +..+++|++|++++| .++..|.
T Consensus 184 ~l~~~~~-l-------~~l~~L~~L~L~~-N~l~~~~~-l~~l~~L~~L~l~~N-~i~~~~~ 234 (308)
T 1h6u_A 184 KISDISP-L-------ASLPNLIEVHLKN-NQISDVSP-LANTSNLFIVTLTNQ-TITNQPV 234 (308)
T ss_dssp CCCCCGG-G-------GGCTTCCEEECTT-SCCCBCGG-GTTCTTCCEEEEEEE-EEECCCE
T ss_pred ccCcChh-h-------cCCCCCCEEEccC-CccCcccc-ccCCCCCCEEEccCC-eeecCCe
Confidence 6666664 3 4678999999998 57777764 788999999999988 5666544
No 79
>1z7x_W Ribonuclease inhibitor; leucine-rich repeat, enzyme- inhibitor complex, structural genomics, protein structure initiative, PSI, CESG; HET: CIT; 1.95A {Homo sapiens} SCOP: c.10.1.1 PDB: 2q4g_W* 2bex_A 1a4y_A 2bnh_A 1dfj_I
Probab=99.68 E-value=4.3e-18 Score=160.14 Aligned_cols=202 Identities=18% Similarity=0.160 Sum_probs=95.1
Q ss_pred CCCcEEEeeccCCcCc----ccccccCCCCCceEeccccCCCcCC------CCCCCCCCCcceEEEccccCcCc-----c
Q 018478 125 TSLETIHIFYCENMKI----LPSGLHNLRQLQEISIEGCGNLESF------PEGGLPCAKLKEVVIRWCGRLEA-----L 189 (355)
Q Consensus 125 ~~L~~L~l~~~~~~~~----~~~~~~~l~~L~~L~l~~~~~l~~~------~~~~~~~~~L~~L~l~~~~~~~~-----~ 189 (355)
++|++|++++|..... ++..+..+++|+.|++++| .+... +..+..+++|+.|++++| .++. +
T Consensus 199 ~~L~~L~L~~n~l~~~~~~~l~~~l~~~~~L~~L~Ls~n-~l~~~~~~~l~~~~~~~~~~L~~L~L~~n-~l~~~~~~~l 276 (461)
T 1z7x_W 199 CQLEALKLESCGVTSDNCRDLCGIVASKASLRELALGSN-KLGDVGMAELCPGLLHPSSRLRTLWIWEC-GITAKGCGDL 276 (461)
T ss_dssp CCCCEEECTTSCCBTTHHHHHHHHHHHCTTCCEEECCSS-BCHHHHHHHHHHHHTSTTCCCCEEECTTS-CCCHHHHHHH
T ss_pred CCceEEEccCCCCcHHHHHHHHHHHHhCCCccEEeccCC-cCChHHHHHHHHHHhcCCCCceEEECcCC-CCCHHHHHHH
Confidence 4555555555542211 2344445566666666655 22211 111123456666666665 2333 4
Q ss_pred cccccCCCCCceEEEeecCcCCC----------CCCCCccEEEecCCcchhhhhhhhcccCCCCCccceeEecccCCccc
Q 018478 190 PKGLHNLKSLQKLTIGKGGLEED----------GLPTNLHSLDIRGNMEIWKSMIEWGQGFHRFSSLRELRIEGCDDDMV 259 (355)
Q Consensus 190 p~~l~~~~~L~~L~l~~~~i~~~----------~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~ 259 (355)
+..+..+++|++|+++.+.+... ...++|+.|++++|.........+...+..+++|++|++++ | .+.
T Consensus 277 ~~~l~~~~~L~~L~Ls~n~i~~~~~~~l~~~l~~~~~~L~~L~L~~n~l~~~~~~~l~~~l~~~~~L~~L~Ls~-n-~i~ 354 (461)
T 1z7x_W 277 CRVLRAKESLKELSLAGNELGDEGARLLCETLLEPGCQLESLWVKSCSFTAACCSHFSSVLAQNRFLLELQISN-N-RLE 354 (461)
T ss_dssp HHHHHHCTTCCEEECTTCCCHHHHHHHHHHHHTSTTCCCCEEECTTSCCBGGGHHHHHHHHHHCSSCCEEECCS-S-BCH
T ss_pred HHHHhhCCCcceEECCCCCCchHHHHHHHHHhccCCccceeeEcCCCCCchHHHHHHHHHHhhCCCccEEEccC-C-ccc
Confidence 44555566666666663333211 11246666666666533321111111144556677777766 2 333
Q ss_pred ccCccccccCCCC-CCCCccceEEeccCCCcc-----cccccCCCCCCccEEeeCCCCCCcccCCC-------CCCCCcc
Q 018478 260 SFPPEDIRMGTTL-PLPTSLTSLAIFSFPNLE-----RLSSSIVDLQNLTSLYLVGCPKLKYFPEK-------GLPSSLL 326 (355)
Q Consensus 260 ~~~~~~~~~~~~~-~~~~~L~~L~l~~~~~l~-----~l~~~~~~~~~L~~L~l~~~~~l~~~~~~-------~~~~~L~ 326 (355)
......+ .... ...++|++|++++| .++ .++..+..+++|++|++++| +++..+.. ....+|+
T Consensus 355 ~~~~~~l--~~~l~~~~~~L~~L~L~~n-~i~~~~~~~l~~~l~~~~~L~~L~l~~N-~i~~~~~~~l~~~l~~~~~~L~ 430 (461)
T 1z7x_W 355 DAGVREL--CQGLGQPGSVLRVLWLADC-DVSDSSCSSLAATLLANHSLRELDLSNN-CLGDAGILQLVESVRQPGCLLE 430 (461)
T ss_dssp HHHHHHH--HHHHTSTTCCCCEEECTTS-CCCHHHHHHHHHHHHHCCCCCEEECCSS-SCCHHHHHHHHHHHTSTTCCCC
T ss_pred cccHHHH--HHHHcCCCCceEEEECCCC-CCChhhHHHHHHHHHhCCCccEEECCCC-CCCHHHHHHHHHHhccCCcchh
Confidence 2211100 0000 01346777777764 444 45555556677777777776 45443211 0123566
Q ss_pred EEEecCCc
Q 018478 327 ELWIGGCP 334 (355)
Q Consensus 327 ~L~l~~c~ 334 (355)
.|++.++.
T Consensus 431 ~L~~~~~~ 438 (461)
T 1z7x_W 431 QLVLYDIY 438 (461)
T ss_dssp EEECTTCC
T ss_pred heeecccc
Confidence 66665543
No 80
>1z7x_W Ribonuclease inhibitor; leucine-rich repeat, enzyme- inhibitor complex, structural genomics, protein structure initiative, PSI, CESG; HET: CIT; 1.95A {Homo sapiens} SCOP: c.10.1.1 PDB: 2q4g_W* 2bex_A 1a4y_A 2bnh_A 1dfj_I
Probab=99.68 E-value=1.3e-18 Score=163.79 Aligned_cols=35 Identities=23% Similarity=0.198 Sum_probs=18.5
Q ss_pred CCCccEEeeCCCCCCcc-----cCCC-CCCCCccEEEecCCc
Q 018478 299 LQNLTSLYLVGCPKLKY-----FPEK-GLPSSLLELWIGGCP 334 (355)
Q Consensus 299 ~~~L~~L~l~~~~~l~~-----~~~~-~~~~~L~~L~l~~c~ 334 (355)
.++|++|++++| +++. ++.. .-+++|++|++++|+
T Consensus 369 ~~~L~~L~L~~n-~i~~~~~~~l~~~l~~~~~L~~L~l~~N~ 409 (461)
T 1z7x_W 369 GSVLRVLWLADC-DVSDSSCSSLAATLLANHSLRELDLSNNC 409 (461)
T ss_dssp TCCCCEEECTTS-CCCHHHHHHHHHHHHHCCCCCEEECCSSS
T ss_pred CCceEEEECCCC-CCChhhHHHHHHHHHhCCCccEEECCCCC
Confidence 456666666666 4542 2211 014666666666664
No 81
>2ast_B S-phase kinase-associated protein 2; SCF-substrate complex, LRR, cell cycle, protein turnover COM ligase-ligase inhibitor complex; HET: TPO; 2.30A {Homo sapiens} SCOP: a.158.1.1 c.10.1.3 PDB: 2ass_B 1fqv_A* 1fs2_A
Probab=99.67 E-value=3.1e-17 Score=147.82 Aligned_cols=106 Identities=14% Similarity=0.350 Sum_probs=67.3
Q ss_pred CCCcccEEEEccCcchh-c-hhhhccCCCCCcEEEeeccCCcCcccccccCCCCCceEeccccCCCcC--CCCCCCCCCC
Q 018478 99 LPPSLKSLRVQGCSKLE-S-IAETLDNSTSLETIHIFYCENMKILPSGLHNLRQLQEISIEGCGNLES--FPEGGLPCAK 174 (355)
Q Consensus 99 ~~~~L~~L~l~~~~~~~-~-~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~l~~--~~~~~~~~~~ 174 (355)
.+++|+.|++++|. +. . ++..+..+++|++|++++|......+..++.+++|+.|++++|..++. ++..+..+++
T Consensus 91 ~~~~L~~L~L~~~~-l~~~~~~~~~~~~~~L~~L~L~~~~l~~~~~~~l~~~~~L~~L~L~~~~~l~~~~l~~~~~~~~~ 169 (336)
T 2ast_B 91 SPFRVQHMDLSNSV-IEVSTLHGILSQCSKLQNLSLEGLRLSDPIVNTLAKNSNLVRLNLSGCSGFSEFALQTLLSSCSR 169 (336)
T ss_dssp CCBCCCEEECTTCE-ECHHHHHHHHTTBCCCSEEECTTCBCCHHHHHHHTTCTTCSEEECTTCBSCCHHHHHHHHHHCTT
T ss_pred cCCCCCEEEccCCC-cCHHHHHHHHhhCCCCCEEeCcCcccCHHHHHHHhcCCCCCEEECCCCCCCCHHHHHHHHhcCCC
Confidence 34677888887776 43 2 666677777888888877763334556667777778887777644442 4444455677
Q ss_pred cceEEEccccCcCc--ccccccCCC-CCceEEEe
Q 018478 175 LKEVVIRWCGRLEA--LPKGLHNLK-SLQKLTIG 205 (355)
Q Consensus 175 L~~L~l~~~~~~~~--~p~~l~~~~-~L~~L~l~ 205 (355)
|++|++++|..++. ++..+..++ +|++|+++
T Consensus 170 L~~L~l~~~~~l~~~~~~~~~~~l~~~L~~L~l~ 203 (336)
T 2ast_B 170 LDELNLSWCFDFTEKHVQVAVAHVSETITQLNLS 203 (336)
T ss_dssp CCEEECCCCTTCCHHHHHHHHHHSCTTCCEEECC
T ss_pred CCEEcCCCCCCcChHHHHHHHHhcccCCCEEEeC
Confidence 77777777634443 344555666 66665554
No 82
>4glp_A Monocyte differentiation antigen CD14; alpha beta BENT solenoid, LRR, lipopolysaccharide, serum, CD leucine-rich repeat, pattern recognition; 4.00A {Homo sapiens}
Probab=99.66 E-value=1.4e-15 Score=135.56 Aligned_cols=199 Identities=13% Similarity=0.060 Sum_probs=108.8
Q ss_pred CCCcEEEeeccCCcCcccccc--cCCCCCceEeccccCCCcCCC----CCCCCCCCcceEEEccccCcCcccccccCCCC
Q 018478 125 TSLETIHIFYCENMKILPSGL--HNLRQLQEISIEGCGNLESFP----EGGLPCAKLKEVVIRWCGRLEALPKGLHNLKS 198 (355)
Q Consensus 125 ~~L~~L~l~~~~~~~~~~~~~--~~l~~L~~L~l~~~~~l~~~~----~~~~~~~~L~~L~l~~~~~~~~~p~~l~~~~~ 198 (355)
++|++|++++|......|..+ ..+++|+.|++++|......+ ..+..+++|+.|++++|......+..++.+++
T Consensus 91 ~~L~~L~l~~n~l~~~~~~~~~~~~~~~L~~L~Ls~n~i~~~~~~~~~~~~~~~~~L~~L~Ls~n~l~~~~~~~~~~l~~ 170 (310)
T 4glp_A 91 SRLKELTLEDLKITGTMPPLPLEATGLALSSLRLRNVSWATGRSWLAELQQWLKPGLKVLSIAQAHSPAFSCEQVRAFPA 170 (310)
T ss_dssp SCCCEEEEESCCCBSCCCCCSSSCCCBCCSSCEEESCCCSSTTSSHHHHHTTBCSCCCEEEEECCSSCCCCTTSCCCCTT
T ss_pred CceeEEEeeCCEeccchhhhhhhccCCCCCEEEeecccccchhhhhHHHHhhhccCCCEEEeeCCCcchhhHHHhccCCC
Confidence 345555555544333333333 444555555555442111111 11123445555555554332222344455555
Q ss_pred CceEEEeecCcC------C---CCCCCCccEEEecCCcchhhhhhhhcccCCCCCccceeEecccCCccccc-Ccccccc
Q 018478 199 LQKLTIGKGGLE------E---DGLPTNLHSLDIRGNMEIWKSMIEWGQGFHRFSSLRELRIEGCDDDMVSF-PPEDIRM 268 (355)
Q Consensus 199 L~~L~l~~~~i~------~---~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~-~~~~~~~ 268 (355)
|++|+++.+.+. . ....++|+.|++++|... ..+......+..+++|++|++++ +.+..+ |..+..
T Consensus 171 L~~L~Ls~N~l~~~~~~~~~~~~~~l~~L~~L~Ls~N~l~-~l~~~~~~l~~~l~~L~~L~Ls~--N~l~~~~p~~~~~- 246 (310)
T 4glp_A 171 LTSLDLSDNPGLGERGLMAALCPHKFPAIQNLALRNTGME-TPTGVCAALAAAGVQPHSLDLSH--NSLRATVNPSAPR- 246 (310)
T ss_dssp CCEEECCSCTTCHHHHHHTTSCTTSSCCCCSCBCCSSCCC-CHHHHHHHHHHHTCCCSSEECTT--SCCCCCCCSCCSS-
T ss_pred CCEEECCCCCCccchhhhHHHhhhcCCCCCEEECCCCCCC-chHHHHHHHHhcCCCCCEEECCC--CCCCccchhhHHh-
Confidence 555555533211 0 123456777777777642 22211000035678899999988 455554 443310
Q ss_pred CCCCCCCCccceEEeccCCCcccccccCCCCCCccEEeeCCCCCCcccCCCCCCCCccEEEecCCc
Q 018478 269 GTTLPLPTSLTSLAIFSFPNLERLSSSIVDLQNLTSLYLVGCPKLKYFPEKGLPSSLLELWIGGCP 334 (355)
Q Consensus 269 ~~~~~~~~~L~~L~l~~~~~l~~l~~~~~~~~~L~~L~l~~~~~l~~~~~~~~~~~L~~L~l~~c~ 334 (355)
...+++|++|++++ +.++.+|..+ .++|++|++++| +++.++....+++|++|++.+++
T Consensus 247 ---~~~~~~L~~L~Ls~-N~l~~lp~~~--~~~L~~L~Ls~N-~l~~~~~~~~l~~L~~L~L~~N~ 305 (310)
T 4glp_A 247 ---CMWSSALNSLNLSF-AGLEQVPKGL--PAKLRVLDLSSN-RLNRAPQPDELPEVDNLTLDGNP 305 (310)
T ss_dssp ---CCCCTTCCCEECCS-SCCCSCCSCC--CSCCSCEECCSC-CCCSCCCTTSCCCCSCEECSSTT
T ss_pred ---ccCcCcCCEEECCC-CCCCchhhhh--cCCCCEEECCCC-cCCCCchhhhCCCccEEECcCCC
Confidence 02236899999988 6788888744 378999999988 78887664557889999988775
No 83
>3ogk_B Coronatine-insensitive protein 1; leucine rich repeat, ubiquitin ligase, SCF, protein binding; HET: OGK; 2.80A {Arabidopsis thaliana} PDB: 3ogl_B* 3ogm_B*
Probab=99.65 E-value=1.2e-17 Score=161.96 Aligned_cols=221 Identities=17% Similarity=0.055 Sum_probs=126.8
Q ss_pred CcccEEEEccCcch----hchhhhccCCCCCcEEEeeccCCcCcccccccCCCCCceEeccccCCC---cCCCCCCCCCC
Q 018478 101 PSLKSLRVQGCSKL----ESIAETLDNSTSLETIHIFYCENMKILPSGLHNLRQLQEISIEGCGNL---ESFPEGGLPCA 173 (355)
Q Consensus 101 ~~L~~L~l~~~~~~----~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~l---~~~~~~~~~~~ 173 (355)
++|+.|++++|... ..++..+..+++|++|++.+|. +..++..+..+++|+.|+++.+... ...+..+..++
T Consensus 192 ~~L~~L~L~~n~~~~~~~~~l~~~~~~~~~L~~L~L~~~~-~~~l~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~l~~~~ 270 (592)
T 3ogk_B 192 TSLEVLNFYMTEFAKISPKDLETIARNCRSLVSVKVGDFE-ILELVGFFKAAANLEEFCGGSLNEDIGMPEKYMNLVFPR 270 (592)
T ss_dssp CCCCEEECTTCCCSSCCHHHHHHHHHHCTTCCEEECSSCB-GGGGHHHHHHCTTCCEEEECBCCCCTTCTTSSSCCCCCT
T ss_pred CCccEEEeeccCCCccCHHHHHHHHhhCCCCcEEeccCcc-HHHHHHHHhhhhHHHhhcccccccccchHHHHHHhhccc
Confidence 45666666555421 2344444556666666666655 4445555666666666666543221 12233445566
Q ss_pred CcceEEEccccCcCcccccccCCCCCceEEEeecCcCC------CCCCCCccEEEecCCcchhhhhhhhcccCCCCCccc
Q 018478 174 KLKEVVIRWCGRLEALPKGLHNLKSLQKLTIGKGGLEE------DGLPTNLHSLDIRGNMEIWKSMIEWGQGFHRFSSLR 247 (355)
Q Consensus 174 ~L~~L~l~~~~~~~~~p~~l~~~~~L~~L~l~~~~i~~------~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~l~~L~ 247 (355)
+|+.+.+.++ ....+|..+..+++|++|+++...+.. ...+++|+.|++.++ ......... +..+++|+
T Consensus 271 ~L~~L~l~~~-~~~~l~~~~~~~~~L~~L~Ls~~~l~~~~~~~~~~~~~~L~~L~L~~~-~~~~~l~~~---~~~~~~L~ 345 (592)
T 3ogk_B 271 KLCRLGLSYM-GPNEMPILFPFAAQIRKLDLLYALLETEDHCTLIQKCPNLEVLETRNV-IGDRGLEVL---AQYCKQLK 345 (592)
T ss_dssp TCCEEEETTC-CTTTGGGGGGGGGGCCEEEETTCCCCHHHHHHHHTTCTTCCEEEEEGG-GHHHHHHHH---HHHCTTCC
T ss_pred cccccCcccc-chhHHHHHHhhcCCCcEEecCCCcCCHHHHHHHHHhCcCCCEEeccCc-cCHHHHHHH---HHhCCCCC
Confidence 7777777663 344556666777888888887433322 245678888888732 222222221 45677888
Q ss_pred eeEeccc---------CCccccc--CccccccCCCCCCCCccceEEeccCCCccc-ccccC-CCCCCccEEeeCC---CC
Q 018478 248 ELRIEGC---------DDDMVSF--PPEDIRMGTTLPLPTSLTSLAIFSFPNLER-LSSSI-VDLQNLTSLYLVG---CP 311 (355)
Q Consensus 248 ~L~l~~~---------~~~~~~~--~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~-l~~~~-~~~~~L~~L~l~~---~~ 311 (355)
+|++++. |+.++.. .... ...++|++|+++. +.++. .+..+ ..+++|++|++++ |.
T Consensus 346 ~L~L~~g~~~~~~~~~~~~~~~~~~~~l~-------~~~~~L~~L~l~~-~~l~~~~~~~l~~~~~~L~~L~l~~~~~~n 417 (592)
T 3ogk_B 346 RLRIERGADEQGMEDEEGLVSQRGLIALA-------QGCQELEYMAVYV-SDITNESLESIGTYLKNLCDFRLVLLDREE 417 (592)
T ss_dssp EEEEECCCCSSTTSSTTCCCCHHHHHHHH-------HHCTTCSEEEEEE-SCCCHHHHHHHHHHCCSCCEEEEEECSCCS
T ss_pred EEEeecCccccccccccCccCHHHHHHHH-------hhCccCeEEEeec-CCccHHHHHHHHhhCCCCcEEEEeecCCCc
Confidence 8888820 2333221 1111 2357888888854 56553 22223 3488999999973 55
Q ss_pred CCcccCCC-C------CCCCccEEEecCCch
Q 018478 312 KLKYFPEK-G------LPSSLLELWIGGCPL 335 (355)
Q Consensus 312 ~l~~~~~~-~------~~~~L~~L~l~~c~~ 335 (355)
+++..|.. + -+++|++|+++.|..
T Consensus 418 ~l~~~p~~~~~~~~~~~~~~L~~L~L~~~~~ 448 (592)
T 3ogk_B 418 RITDLPLDNGVRSLLIGCKKLRRFAFYLRQG 448 (592)
T ss_dssp CCSSCCCHHHHHHHHHHCTTCCEEEEECCGG
T ss_pred cccCchHHHHHHHHHHhCCCCCEEEEecCCC
Confidence 77765432 1 168999999988764
No 84
>2p1m_B Transport inhibitor response 1 protein; F-BOX, leucine rich repeat, signaling protein; HET: IHP; 1.80A {Arabidopsis thaliana} PDB: 2p1n_B* 2p1o_B* 2p1p_B* 2p1q_B* 3c6n_B* 3c6o_B* 3c6p_B*
Probab=99.65 E-value=1.1e-17 Score=162.30 Aligned_cols=59 Identities=14% Similarity=0.241 Sum_probs=33.5
Q ss_pred CCccceEEeccCCCccc-ccccC-CCCCCccEEeeCCCCCCcccCCC---CCCCCccEEEecCCch
Q 018478 275 PTSLTSLAIFSFPNLER-LSSSI-VDLQNLTSLYLVGCPKLKYFPEK---GLPSSLLELWIGGCPL 335 (355)
Q Consensus 275 ~~~L~~L~l~~~~~l~~-l~~~~-~~~~~L~~L~l~~~~~l~~~~~~---~~~~~L~~L~l~~c~~ 335 (355)
.++|+.|++++|. ++. ....+ ..+++|++|++++|+ ++..+.. ..+++|++|++.+|+.
T Consensus 455 ~~~L~~L~L~~~~-i~~~~~~~l~~~~~~L~~L~L~~n~-~~~~~~~~~~~~l~~L~~L~l~~~~~ 518 (594)
T 2p1m_B 455 AKKMEMLSVAFAG-DSDLGMHHVLSGCDSLRKLEIRDCP-FGDKALLANASKLETMRSLWMSSCSV 518 (594)
T ss_dssp CTTCCEEEEESCC-SSHHHHHHHHHHCTTCCEEEEESCS-CCHHHHHHTGGGGGGSSEEEEESSCC
T ss_pred chhccEeeccCCC-CcHHHHHHHHhcCCCcCEEECcCCC-CcHHHHHHHHHhCCCCCEEeeeCCCC
Confidence 4556666666643 321 11111 457788888888874 4332211 1257888888888865
No 85
>3ogk_B Coronatine-insensitive protein 1; leucine rich repeat, ubiquitin ligase, SCF, protein binding; HET: OGK; 2.80A {Arabidopsis thaliana} PDB: 3ogl_B* 3ogm_B*
Probab=99.64 E-value=1.7e-17 Score=161.01 Aligned_cols=312 Identities=15% Similarity=0.079 Sum_probs=162.3
Q ss_pred CCCCccEEeecccccCcccccCc----cCCCcceEecccCccccccccccCcCCCCCCCccccccccccEEEecCCC---
Q 018478 4 TNSSLEILEIWSCRSLTYLAAVQ----LPRSLKRLDIQCCSNIRTLTMEEGIQSSSSSSSRRYTSYLLEELCISSCR--- 76 (355)
Q Consensus 4 ~~~~L~~L~l~~~~~l~~l~~~~----~~~~L~~L~l~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~--- 76 (355)
.+++|++|++++| .++...... ++.+|++|++.+|..+....... ....+++|++|++++|.
T Consensus 110 ~~~~L~~L~L~~~-~i~~~~~~~l~~~~~~~L~~L~L~~~~~~~~~~l~~----------~~~~~~~L~~L~L~~~~~~~ 178 (592)
T 3ogk_B 110 NLRQLKSVHFRRM-IVSDLDLDRLAKARADDLETLKLDKCSGFTTDGLLS----------IVTHCRKIKTLLMEESSFSE 178 (592)
T ss_dssp HCTTCCEEEEESC-BCCHHHHHHHHHHHGGGCCEEEEESCEEEEHHHHHH----------HHHHCTTCSEEECTTCEEEC
T ss_pred hCCCCCeEEeecc-EecHHHHHHHHHhccccCcEEECcCCCCcCHHHHHH----------HHhhCCCCCEEECccccccC
Confidence 5788999999876 343221111 22348999988876332111100 01236667777776653
Q ss_pred --------------ccchh-ccccccc----hhccccccCCCCCcccEEEEccCcchhchhhhccCCCCCcEEEeeccCC
Q 018478 77 --------------SLTSI-FSKNELS----ATLESLEVGNLPPSLKSLRVQGCSKLESIAETLDNSTSLETIHIFYCEN 137 (355)
Q Consensus 77 --------------~l~~~-~~~n~~~----~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~ 137 (355)
.++.+ ++.|++. +.++ .....+++|+.|++++|. +..++..+..+++|++|.++....
T Consensus 179 ~~~~~l~~~~~~~~~L~~L~L~~n~~~~~~~~~l~--~~~~~~~~L~~L~L~~~~-~~~l~~~~~~~~~L~~L~l~~~~~ 255 (592)
T 3ogk_B 179 KDGKWLHELAQHNTSLEVLNFYMTEFAKISPKDLE--TIARNCRSLVSVKVGDFE-ILELVGFFKAAANLEEFCGGSLNE 255 (592)
T ss_dssp CCSHHHHHHHHHCCCCCEEECTTCCCSSCCHHHHH--HHHHHCTTCCEEECSSCB-GGGGHHHHHHCTTCCEEEECBCCC
T ss_pred cchhHHHHHHhcCCCccEEEeeccCCCccCHHHHH--HHHhhCCCCcEEeccCcc-HHHHHHHHhhhhHHHhhccccccc
Confidence 12222 3333333 1111 111335799999999987 777888888899999999975332
Q ss_pred c---CcccccccCCCCCceEeccccCCCcCCCCCCCCCCCcceEEEccccCcCc--ccccccCCCCCceEEEeecCcCC-
Q 018478 138 M---KILPSGLHNLRQLQEISIEGCGNLESFPEGGLPCAKLKEVVIRWCGRLEA--LPKGLHNLKSLQKLTIGKGGLEE- 211 (355)
Q Consensus 138 ~---~~~~~~~~~l~~L~~L~l~~~~~l~~~~~~~~~~~~L~~L~l~~~~~~~~--~p~~l~~~~~L~~L~l~~~~i~~- 211 (355)
. ...+..+..+++|+.++++++ ....+|..+..+++|++|++++|. ++. ++..+..+++|++|+++ ..+..
T Consensus 256 ~~~~~~~~~~l~~~~~L~~L~l~~~-~~~~l~~~~~~~~~L~~L~Ls~~~-l~~~~~~~~~~~~~~L~~L~L~-~~~~~~ 332 (592)
T 3ogk_B 256 DIGMPEKYMNLVFPRKLCRLGLSYM-GPNEMPILFPFAAQIRKLDLLYAL-LETEDHCTLIQKCPNLEVLETR-NVIGDR 332 (592)
T ss_dssp CTTCTTSSSCCCCCTTCCEEEETTC-CTTTGGGGGGGGGGCCEEEETTCC-CCHHHHHHHHTTCTTCCEEEEE-GGGHHH
T ss_pred ccchHHHHHHhhccccccccCcccc-chhHHHHHHhhcCCCcEEecCCCc-CCHHHHHHHHHhCcCCCEEecc-CccCHH
Confidence 2 122344556667777777653 334455555556677777777765 322 11234566666666665 11111
Q ss_pred -----CCCCCCccEEEecC----------Ccchhhhhhhhc----------------------cc-CCCCCccceeEecc
Q 018478 212 -----DGLPTNLHSLDIRG----------NMEIWKSMIEWG----------------------QG-FHRFSSLRELRIEG 253 (355)
Q Consensus 212 -----~~~~~~L~~L~l~~----------~~~~~~~~~~~~----------------------~~-~~~l~~L~~L~l~~ 253 (355)
...+++|+.|++.+ |..++....... .. ...+++|++|++++
T Consensus 333 ~l~~~~~~~~~L~~L~L~~g~~~~~~~~~~~~~~~~~~~~l~~~~~~L~~L~l~~~~l~~~~~~~l~~~~~~L~~L~l~~ 412 (592)
T 3ogk_B 333 GLEVLAQYCKQLKRLRIERGADEQGMEDEEGLVSQRGLIALAQGCQELEYMAVYVSDITNESLESIGTYLKNLCDFRLVL 412 (592)
T ss_dssp HHHHHHHHCTTCCEEEEECCCCSSTTSSTTCCCCHHHHHHHHHHCTTCSEEEEEESCCCHHHHHHHHHHCCSCCEEEEEE
T ss_pred HHHHHHHhCCCCCEEEeecCccccccccccCccCHHHHHHHHhhCccCeEEEeecCCccHHHHHHHHhhCCCCcEEEEee
Confidence 01234555555552 332322111000 00 12245555665552
Q ss_pred c--CCcccccCccccccCCCCCCCCccceEEeccCCC-ccc-ccccC-CCCCCccEEeeCCCCCCcccCCC---CCCCCc
Q 018478 254 C--DDDMVSFPPEDIRMGTTLPLPTSLTSLAIFSFPN-LER-LSSSI-VDLQNLTSLYLVGCPKLKYFPEK---GLPSSL 325 (355)
Q Consensus 254 ~--~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~-l~~-l~~~~-~~~~~L~~L~l~~~~~l~~~~~~---~~~~~L 325 (355)
. |+.++..|.+.. ........++|++|++++|.+ +.. ....+ ..+++|++|++++| +++..... .-+++|
T Consensus 413 ~~~~n~l~~~p~~~~-~~~~~~~~~~L~~L~L~~~~~~l~~~~~~~~~~~~~~L~~L~L~~n-~l~~~~~~~~~~~~~~L 490 (592)
T 3ogk_B 413 LDREERITDLPLDNG-VRSLLIGCKKLRRFAFYLRQGGLTDLGLSYIGQYSPNVRWMLLGYV-GESDEGLMEFSRGCPNL 490 (592)
T ss_dssp CSCCSCCSSCCCHHH-HHHHHHHCTTCCEEEEECCGGGCCHHHHHHHHHSCTTCCEEEECSC-CSSHHHHHHHHTCCTTC
T ss_pred cCCCccccCchHHHH-HHHHHHhCCCCCEEEEecCCCCccHHHHHHHHHhCccceEeeccCC-CCCHHHHHHHHhcCccc
Confidence 0 233433321100 000002356777777765442 221 11111 44788888888887 56542211 236899
Q ss_pred cEEEecCCc
Q 018478 326 LELWIGGCP 334 (355)
Q Consensus 326 ~~L~l~~c~ 334 (355)
++|++++|+
T Consensus 491 ~~L~l~~n~ 499 (592)
T 3ogk_B 491 QKLEMRGCC 499 (592)
T ss_dssp CEEEEESCC
T ss_pred CeeeccCCC
Confidence 999999998
No 86
>3rfs_A Internalin B, repeat modules, variable lymphocyte B; LRR, protein binding, plasma; 1.70A {Listeria monocytogenes} PDB: 3rfj_A
Probab=99.63 E-value=2.3e-15 Score=131.52 Aligned_cols=123 Identities=20% Similarity=0.305 Sum_probs=80.2
Q ss_pred cccccEEEecCCCccchhccccccchhccccccCCCCCcccEEEEccCcchhchhhhccCCCCCcEEEeeccCCcCccc-
Q 018478 64 SYLLEELCISSCRSLTSIFSKNELSATLESLEVGNLPPSLKSLRVQGCSKLESIAETLDNSTSLETIHIFYCENMKILP- 142 (355)
Q Consensus 64 ~~~L~~L~l~~~~~l~~~~~~n~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~- 142 (355)
+++|+.|++.++ .++.+ +....+++|+.|++++|. +..++ .+..+++|++|++++|. +..++
T Consensus 40 l~~L~~L~l~~~-~i~~~-------------~~l~~l~~L~~L~l~~n~-l~~~~-~l~~l~~L~~L~L~~n~-l~~~~~ 102 (272)
T 3rfs_A 40 LNSIDQIIANNS-DIKSV-------------QGIQYLPNVRYLALGGNK-LHDIS-ALKELTNLTYLILTGNQ-LQSLPN 102 (272)
T ss_dssp HTTCCEEECTTS-CCCCC-------------TTGGGCTTCCEEECTTSC-CCCCG-GGTTCTTCCEEECTTSC-CCCCCT
T ss_pred ccceeeeeeCCC-Ccccc-------------cccccCCCCcEEECCCCC-CCCch-hhcCCCCCCEEECCCCc-cCccCh
Confidence 677888887765 34444 433445778888888776 55554 56677888888888776 44443
Q ss_pred ccccCCCCCceEeccccCCCcCCCC-CCCCCCCcceEEEccccCcCccc-ccccCCCCCceEEEe
Q 018478 143 SGLHNLRQLQEISIEGCGNLESFPE-GGLPCAKLKEVVIRWCGRLEALP-KGLHNLKSLQKLTIG 205 (355)
Q Consensus 143 ~~~~~l~~L~~L~l~~~~~l~~~~~-~~~~~~~L~~L~l~~~~~~~~~p-~~l~~~~~L~~L~l~ 205 (355)
..+..+++|+.|++++| .+..++. .+..+++|+.|++++|. ++.++ ..+..+++|++|+++
T Consensus 103 ~~~~~l~~L~~L~L~~n-~l~~~~~~~~~~l~~L~~L~L~~n~-l~~~~~~~~~~l~~L~~L~l~ 165 (272)
T 3rfs_A 103 GVFDKLTNLKELVLVEN-QLQSLPDGVFDKLTNLTYLNLAHNQ-LQSLPKGVFDKLTNLTELDLS 165 (272)
T ss_dssp TTTTTCTTCCEEECTTS-CCCCCCTTTTTTCTTCCEEECCSSC-CCCCCTTTTTTCTTCCEEECC
T ss_pred hHhcCCcCCCEEECCCC-cCCccCHHHhccCCCCCEEECCCCc-cCccCHHHhccCccCCEEECC
Confidence 34577788888888876 4555543 35667788888887763 44443 345666666666665
No 87
>4glp_A Monocyte differentiation antigen CD14; alpha beta BENT solenoid, LRR, lipopolysaccharide, serum, CD leucine-rich repeat, pattern recognition; 4.00A {Homo sapiens}
Probab=99.62 E-value=1.4e-15 Score=135.61 Aligned_cols=199 Identities=18% Similarity=0.122 Sum_probs=144.4
Q ss_pred CcccEEEEccCcchhchhhhc--cCCCCCcEEEeeccCCcCccc----ccccCCCCCceEeccccCCCcCC-CCCCCCCC
Q 018478 101 PSLKSLRVQGCSKLESIAETL--DNSTSLETIHIFYCENMKILP----SGLHNLRQLQEISIEGCGNLESF-PEGGLPCA 173 (355)
Q Consensus 101 ~~L~~L~l~~~~~~~~~~~~~--~~l~~L~~L~l~~~~~~~~~~----~~~~~l~~L~~L~l~~~~~l~~~-~~~~~~~~ 173 (355)
++|+.|++++|......|..+ ..+++|++|++++|......+ ..+..+++|+.|++++|. +..+ +..+..++
T Consensus 91 ~~L~~L~l~~n~l~~~~~~~~~~~~~~~L~~L~Ls~n~i~~~~~~~~~~~~~~~~~L~~L~Ls~n~-l~~~~~~~~~~l~ 169 (310)
T 4glp_A 91 SRLKELTLEDLKITGTMPPLPLEATGLALSSLRLRNVSWATGRSWLAELQQWLKPGLKVLSIAQAH-SPAFSCEQVRAFP 169 (310)
T ss_dssp SCCCEEEEESCCCBSCCCCCSSSCCCBCCSSCEEESCCCSSTTSSHHHHHTTBCSCCCEEEEECCS-SCCCCTTSCCCCT
T ss_pred CceeEEEeeCCEeccchhhhhhhccCCCCCEEEeecccccchhhhhHHHHhhhccCCCEEEeeCCC-cchhhHHHhccCC
Confidence 569999999988444566665 778999999999988444332 234568899999999874 4444 46777889
Q ss_pred CcceEEEccccCcCc--cc--ccccCCCCCceEEEeecCcCCC--------CCCCCccEEEecCCcchhhhhhhhcccCC
Q 018478 174 KLKEVVIRWCGRLEA--LP--KGLHNLKSLQKLTIGKGGLEED--------GLPTNLHSLDIRGNMEIWKSMIEWGQGFH 241 (355)
Q Consensus 174 ~L~~L~l~~~~~~~~--~p--~~l~~~~~L~~L~l~~~~i~~~--------~~~~~L~~L~l~~~~~~~~~~~~~~~~~~ 241 (355)
+|++|++++|..... ++ ..+..+++|++|+++.+.+... ..+++|+.|++++|......+..+. .+.
T Consensus 170 ~L~~L~Ls~N~l~~~~~~~~~~~~~~l~~L~~L~Ls~N~l~~l~~~~~~l~~~l~~L~~L~Ls~N~l~~~~p~~~~-~~~ 248 (310)
T 4glp_A 170 ALTSLDLSDNPGLGERGLMAALCPHKFPAIQNLALRNTGMETPTGVCAALAAAGVQPHSLDLSHNSLRATVNPSAP-RCM 248 (310)
T ss_dssp TCCEEECCSCTTCHHHHHHTTSCTTSSCCCCSCBCCSSCCCCHHHHHHHHHHHTCCCSSEECTTSCCCCCCCSCCS-SCC
T ss_pred CCCEEECCCCCCccchhhhHHHhhhcCCCCCEEECCCCCCCchHHHHHHHHhcCCCCCEEECCCCCCCccchhhHH-hcc
Confidence 999999999754322 22 2336788999999986655421 2458999999999885543333211 133
Q ss_pred CCCccceeEecccCCcccccCccccccCCCCCCCCccceEEeccCCCcccccccCCCCCCccEEeeCCCCCCcc
Q 018478 242 RFSSLRELRIEGCDDDMVSFPPEDIRMGTTLPLPTSLTSLAIFSFPNLERLSSSIVDLQNLTSLYLVGCPKLKY 315 (355)
Q Consensus 242 ~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~l~~~~~~~~~L~~L~l~~~~~l~~ 315 (355)
.+++|++|++++ +.++.+|... +++|++|++++ +.++.+|. +..+++|++|++++| .++.
T Consensus 249 ~~~~L~~L~Ls~--N~l~~lp~~~---------~~~L~~L~Ls~-N~l~~~~~-~~~l~~L~~L~L~~N-~l~~ 308 (310)
T 4glp_A 249 WSSALNSLNLSF--AGLEQVPKGL---------PAKLRVLDLSS-NRLNRAPQ-PDELPEVDNLTLDGN-PFLV 308 (310)
T ss_dssp CCTTCCCEECCS--SCCCSCCSCC---------CSCCSCEECCS-CCCCSCCC-TTSCCCCSCEECSST-TTSC
T ss_pred CcCcCCEEECCC--CCCCchhhhh---------cCCCCEEECCC-CcCCCCch-hhhCCCccEEECcCC-CCCC
Confidence 347999999998 6777888644 37999999999 68888765 678999999999998 4543
No 88
>2ast_B S-phase kinase-associated protein 2; SCF-substrate complex, LRR, cell cycle, protein turnover COM ligase-ligase inhibitor complex; HET: TPO; 2.30A {Homo sapiens} SCOP: a.158.1.1 c.10.1.3 PDB: 2ass_B 1fqv_A* 1fs2_A
Probab=99.62 E-value=1.5e-16 Score=143.33 Aligned_cols=171 Identities=13% Similarity=0.190 Sum_probs=116.3
Q ss_pred CccEEeecccccCcccccCc-cCCCcceEecccCccccccccccCcCCCCCCCccccccccccEEEecCCCccch--hcc
Q 018478 7 SLEILEIWSCRSLTYLAAVQ-LPRSLKRLDIQCCSNIRTLTMEEGIQSSSSSSSRRYTSYLLEELCISSCRSLTS--IFS 83 (355)
Q Consensus 7 ~L~~L~l~~~~~l~~l~~~~-~~~~L~~L~l~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~--~~~ 83 (355)
.++.++++++ .+..-.... ..++++.|++.++ .+...+... ..+++|++|+++++. +.. +
T Consensus 48 ~~~~l~l~~~-~~~~~~~~~~~~~~l~~L~l~~n-~l~~~~~~~------------~~~~~L~~L~L~~~~-l~~~~~-- 110 (336)
T 2ast_B 48 LWQTLDLTGK-NLHPDVTGRLLSQGVIAFRCPRS-FMDQPLAEH------------FSPFRVQHMDLSNSV-IEVSTL-- 110 (336)
T ss_dssp TSSEEECTTC-BCCHHHHHHHHHTTCSEEECTTC-EECSCCCSC------------CCCBCCCEEECTTCE-ECHHHH--
T ss_pred hheeeccccc-cCCHHHHHhhhhccceEEEcCCc-cccccchhh------------ccCCCCCEEEccCCC-cCHHHH--
Confidence 3677777754 222100011 1278889998884 455443332 348899999999874 332 2
Q ss_pred ccccchhcccccc-CCCCCcccEEEEccCcchhchhhhccCCCCCcEEEeeccCCcCc--ccccccCCCCCceEeccccC
Q 018478 84 KNELSATLESLEV-GNLPPSLKSLRVQGCSKLESIAETLDNSTSLETIHIFYCENMKI--LPSGLHNLRQLQEISIEGCG 160 (355)
Q Consensus 84 ~n~~~~~~~~~~~-~~~~~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~--~~~~~~~l~~L~~L~l~~~~ 160 (355)
+. ...+++|+.|++++|......+..+..+++|++|++++|..++. ++..+..+++|+.|++++|.
T Consensus 111 -----------~~~~~~~~~L~~L~L~~~~l~~~~~~~l~~~~~L~~L~L~~~~~l~~~~l~~~~~~~~~L~~L~l~~~~ 179 (336)
T 2ast_B 111 -----------HGILSQCSKLQNLSLEGLRLSDPIVNTLAKNSNLVRLNLSGCSGFSEFALQTLLSSCSRLDELNLSWCF 179 (336)
T ss_dssp -----------HHHHTTBCCCSEEECTTCBCCHHHHHHHTTCTTCSEEECTTCBSCCHHHHHHHHHHCTTCCEEECCCCT
T ss_pred -----------HHHHhhCCCCCEEeCcCcccCHHHHHHHhcCCCCCEEECCCCCCCCHHHHHHHHhcCCCCCEEcCCCCC
Confidence 21 24558999999999974446777888899999999999955663 66667889999999999985
Q ss_pred CCcC--CCCCCCCCC-CcceEEEcccc-Cc--CcccccccCCCCCceEEEe
Q 018478 161 NLES--FPEGGLPCA-KLKEVVIRWCG-RL--EALPKGLHNLKSLQKLTIG 205 (355)
Q Consensus 161 ~l~~--~~~~~~~~~-~L~~L~l~~~~-~~--~~~p~~l~~~~~L~~L~l~ 205 (355)
.++. ++..+..++ +|++|++++|. .+ ..++..+..+++|++|+++
T Consensus 180 ~l~~~~~~~~~~~l~~~L~~L~l~~~~~~~~~~~l~~~~~~~~~L~~L~l~ 230 (336)
T 2ast_B 180 DFTEKHVQVAVAHVSETITQLNLSGYRKNLQKSDLSTLVRRCPNLVHLDLS 230 (336)
T ss_dssp TCCHHHHHHHHHHSCTTCCEEECCSCGGGSCHHHHHHHHHHCTTCSEEECT
T ss_pred CcChHHHHHHHHhcccCCCEEEeCCCcccCCHHHHHHHHhhCCCCCEEeCC
Confidence 5543 445566678 99999999974 33 3345566677766666664
No 89
>3rfs_A Internalin B, repeat modules, variable lymphocyte B; LRR, protein binding, plasma; 1.70A {Listeria monocytogenes} PDB: 3rfj_A
Probab=99.60 E-value=5.4e-15 Score=129.19 Aligned_cols=193 Identities=18% Similarity=0.197 Sum_probs=127.0
Q ss_pred CCcceEecccCccccccccccCcCCCCCCCccccccccccEEEecCCCccchhccccccchhccccccCCCCCcccEEEE
Q 018478 29 RSLKRLDIQCCSNIRTLTMEEGIQSSSSSSSRRYTSYLLEELCISSCRSLTSIFSKNELSATLESLEVGNLPPSLKSLRV 108 (355)
Q Consensus 29 ~~L~~L~l~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~~~~~n~~~~~~~~~~~~~~~~~L~~L~l 108 (355)
++|++|.+.++ .++.++. +..+++|++|+++++ .++.+ +....+++|++|++
T Consensus 41 ~~L~~L~l~~~-~i~~~~~-------------l~~l~~L~~L~l~~n-~l~~~-------------~~l~~l~~L~~L~L 92 (272)
T 3rfs_A 41 NSIDQIIANNS-DIKSVQG-------------IQYLPNVRYLALGGN-KLHDI-------------SALKELTNLTYLIL 92 (272)
T ss_dssp TTCCEEECTTS-CCCCCTT-------------GGGCTTCCEEECTTS-CCCCC-------------GGGTTCTTCCEEEC
T ss_pred cceeeeeeCCC-Ccccccc-------------cccCCCCcEEECCCC-CCCCc-------------hhhcCCCCCCEEEC
Confidence 77888888874 3555543 233778888888875 34444 43445578888888
Q ss_pred ccCcchhchh-hhccCCCCCcEEEeeccCCcCccc-ccccCCCCCceEeccccCCCcCCCCC-CCCCCCcceEEEccccC
Q 018478 109 QGCSKLESIA-ETLDNSTSLETIHIFYCENMKILP-SGLHNLRQLQEISIEGCGNLESFPEG-GLPCAKLKEVVIRWCGR 185 (355)
Q Consensus 109 ~~~~~~~~~~-~~~~~l~~L~~L~l~~~~~~~~~~-~~~~~l~~L~~L~l~~~~~l~~~~~~-~~~~~~L~~L~l~~~~~ 185 (355)
++|. +..++ ..+..+++|++|++++|. +..++ ..+..+++|+.|++++| .++.++.. +..+++|+.|++++|.
T Consensus 93 ~~n~-l~~~~~~~~~~l~~L~~L~L~~n~-l~~~~~~~~~~l~~L~~L~L~~n-~l~~~~~~~~~~l~~L~~L~l~~n~- 168 (272)
T 3rfs_A 93 TGNQ-LQSLPNGVFDKLTNLKELVLVENQ-LQSLPDGVFDKLTNLTYLNLAHN-QLQSLPKGVFDKLTNLTELDLSYNQ- 168 (272)
T ss_dssp TTSC-CCCCCTTTTTTCTTCCEEECTTSC-CCCCCTTTTTTCTTCCEEECCSS-CCCCCCTTTTTTCTTCCEEECCSSC-
T ss_pred CCCc-cCccChhHhcCCcCCCEEECCCCc-CCccCHHHhccCCCCCEEECCCC-ccCccCHHHhccCccCCEEECCCCC-
Confidence 8876 55554 345778888888888877 44444 44677888888888887 55565543 4667888888888864
Q ss_pred cCccc-ccccCCCCCceEEEeecCcC---C--CCCCCCccEEEecCCcchhhhhhhhcccCCCCCccceeEecccCCccc
Q 018478 186 LEALP-KGLHNLKSLQKLTIGKGGLE---E--DGLPTNLHSLDIRGNMEIWKSMIEWGQGFHRFSSLRELRIEGCDDDMV 259 (355)
Q Consensus 186 ~~~~p-~~l~~~~~L~~L~l~~~~i~---~--~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~ 259 (355)
++.++ ..+..+++|++|+++.+.+. . ...+++|+.|++++|.. ...+++|+.++++. +....
T Consensus 169 l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~l~~N~~-----------~~~~~~l~~l~~~~-n~~~g 236 (272)
T 3rfs_A 169 LQSLPEGVFDKLTQLKDLRLYQNQLKSVPDGVFDRLTSLQYIWLHDNPW-----------DCTCPGIRYLSEWI-NKHSG 236 (272)
T ss_dssp CCCCCTTTTTTCTTCCEEECCSSCCSCCCTTTTTTCTTCCEEECCSSCB-----------CCCTTTTHHHHHHH-HHTGG
T ss_pred cCccCHHHhcCCccCCEEECCCCcCCccCHHHHhCCcCCCEEEccCCCc-----------cccCcHHHHHHHHH-HhCCC
Confidence 44444 34677888888888743333 2 24567888888888752 23456777777776 33344
Q ss_pred ccCccc
Q 018478 260 SFPPED 265 (355)
Q Consensus 260 ~~~~~~ 265 (355)
.+|...
T Consensus 237 ~ip~~~ 242 (272)
T 3rfs_A 237 VVRNSA 242 (272)
T ss_dssp GBBCTT
T ss_pred cccCcc
Confidence 555544
No 90
>2p1m_B Transport inhibitor response 1 protein; F-BOX, leucine rich repeat, signaling protein; HET: IHP; 1.80A {Arabidopsis thaliana} PDB: 2p1n_B* 2p1o_B* 2p1p_B* 2p1q_B* 3c6n_B* 3c6o_B* 3c6p_B*
Probab=99.60 E-value=6.6e-17 Score=156.82 Aligned_cols=90 Identities=17% Similarity=0.144 Sum_probs=47.6
Q ss_pred CCCccceeEec--c--cCCcccccCccccccCCCCCCCCccceEEeccCCCccc-ccccC-CCCCCccEEeeCCCCCCcc
Q 018478 242 RFSSLRELRIE--G--CDDDMVSFPPEDIRMGTTLPLPTSLTSLAIFSFPNLER-LSSSI-VDLQNLTSLYLVGCPKLKY 315 (355)
Q Consensus 242 ~l~~L~~L~l~--~--~~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~-l~~~~-~~~~~L~~L~l~~~~~l~~ 315 (355)
.+++|++|+++ + .|+.++..+.+.. ........++|++|++++ .++. ....+ ..+++|++|++++| .++.
T Consensus 395 ~~~~L~~L~L~~~~~~~~~~l~~~~~~~~-~~~l~~~~~~L~~L~L~~--~l~~~~~~~l~~~~~~L~~L~L~~~-~i~~ 470 (594)
T 2p1m_B 395 NRPNMTRFRLCIIEPKAPDYLTLEPLDIG-FGAIVEHCKDLRRLSLSG--LLTDKVFEYIGTYAKKMEMLSVAFA-GDSD 470 (594)
T ss_dssp HCTTCCEEEEEESSTTCCCTTTCCCTHHH-HHHHHHHCTTCCEEECCS--SCCHHHHHHHHHHCTTCCEEEEESC-CSSH
T ss_pred hCCCcceeEeecccCCCcccccCCchhhH-HHHHHhhCCCccEEeecC--cccHHHHHHHHHhchhccEeeccCC-CCcH
Confidence 45667777776 1 1455543332100 000002345677777755 3221 11112 23778888888887 4544
Q ss_pred cCCCCC---CCCccEEEecCCch
Q 018478 316 FPEKGL---PSSLLELWIGGCPL 335 (355)
Q Consensus 316 ~~~~~~---~~~L~~L~l~~c~~ 335 (355)
.....+ +++|++|++++|+.
T Consensus 471 ~~~~~l~~~~~~L~~L~L~~n~~ 493 (594)
T 2p1m_B 471 LGMHHVLSGCDSLRKLEIRDCPF 493 (594)
T ss_dssp HHHHHHHHHCTTCCEEEEESCSC
T ss_pred HHHHHHHhcCCCcCEEECcCCCC
Confidence 322111 68999999999975
No 91
>2ca6_A RAN GTPase-activating protein 1; GAP, GTPase activation, hemihedral twinning, leucine-rich repeat protein, LRR, merohedral twinning; 2.2A {Schizosaccharomyces pombe} SCOP: c.10.1.2 PDB: 1k5g_C* 1k5d_C 1yrg_A
Probab=99.57 E-value=3.5e-16 Score=143.75 Aligned_cols=238 Identities=15% Similarity=0.116 Sum_probs=137.5
Q ss_pred cccccccEEEecCCCccchhccccccchhccccccCCCCCcccEEEEccCc--chh-chhh-------hccCCCCCcEEE
Q 018478 62 YTSYLLEELCISSCRSLTSIFSKNELSATLESLEVGNLPPSLKSLRVQGCS--KLE-SIAE-------TLDNSTSLETIH 131 (355)
Q Consensus 62 ~~~~~L~~L~l~~~~~l~~~~~~n~~~~~~~~~~~~~~~~~L~~L~l~~~~--~~~-~~~~-------~~~~l~~L~~L~ 131 (355)
..+++|++|+++++. +... .. ..++ .....+++|+.|++++|. .+. .+|. .+..+++|++|+
T Consensus 29 ~~~~~L~~L~L~~n~-i~~~----~~-~~l~--~~l~~~~~L~~L~Ls~~~~~~l~~~~~~~~~~l~~~l~~~~~L~~L~ 100 (386)
T 2ca6_A 29 LEDDSVKEIVLSGNT-IGTE----AA-RWLS--ENIASKKDLEIAEFSDIFTGRVKDEIPEALRLLLQALLKCPKLHTVR 100 (386)
T ss_dssp HHCSCCCEEECTTSE-ECHH----HH-HHHH--HTTTTCTTCCEEECCSCCTTSCGGGSHHHHHHHHHHHTTCTTCCEEE
T ss_pred hcCCCccEEECCCCC-CCHH----HH-HHHH--HHHHhCCCccEEeCcccccCccccchhHHHHHHHHHHhhCCcccEEE
Confidence 346677777777653 2221 00 0000 011234678888887763 111 2232 336778888888
Q ss_pred eeccCCcC----cccccccCCCCCceEeccccCCCcC-----CCCCCCCC---------CCcceEEEccccCc-Cccc--
Q 018478 132 IFYCENMK----ILPSGLHNLRQLQEISIEGCGNLES-----FPEGGLPC---------AKLKEVVIRWCGRL-EALP-- 190 (355)
Q Consensus 132 l~~~~~~~----~~~~~~~~l~~L~~L~l~~~~~l~~-----~~~~~~~~---------~~L~~L~l~~~~~~-~~~p-- 190 (355)
+++|.... .++..+..+++|+.|++++|. +.. ++..+..+ ++|++|++++|... ..++
T Consensus 101 Ls~n~l~~~~~~~l~~~l~~~~~L~~L~L~~n~-l~~~~~~~l~~~l~~l~~~~~~~~~~~L~~L~L~~n~l~~~~~~~l 179 (386)
T 2ca6_A 101 LSDNAFGPTAQEPLIDFLSKHTPLEHLYLHNNG-LGPQAGAKIARALQELAVNKKAKNAPPLRSIICGRNRLENGSMKEW 179 (386)
T ss_dssp CCSCCCCTTTHHHHHHHHHHCTTCCEEECCSSC-CHHHHHHHHHHHHHHHHHHHHHHTCCCCCEEECCSSCCTGGGHHHH
T ss_pred CCCCcCCHHHHHHHHHHHHhCCCCCEEECcCCC-CCHHHHHHHHHHHHHHhhhhhcccCCCCcEEECCCCCCCcHHHHHH
Confidence 88877333 256667777888888888763 321 11112222 67888888876432 2333
Q ss_pred -ccccCCCCCceEEEeecCcC----------CCCCCCCccEEEecCCcchhhhhhhhcccCCCCCccceeEecccCCccc
Q 018478 191 -KGLHNLKSLQKLTIGKGGLE----------EDGLPTNLHSLDIRGNMEIWKSMIEWGQGFHRFSSLRELRIEGCDDDMV 259 (355)
Q Consensus 191 -~~l~~~~~L~~L~l~~~~i~----------~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~ 259 (355)
..+..+++|++|+++.+.+. .....++|+.|++++|..........+..+..+++|++|++++ | .+.
T Consensus 180 ~~~l~~~~~L~~L~L~~n~l~~~g~~~l~~~~l~~~~~L~~L~Ls~n~l~~~g~~~l~~~l~~~~~L~~L~L~~-n-~i~ 257 (386)
T 2ca6_A 180 AKTFQSHRLLHTVKMVQNGIRPEGIEHLLLEGLAYCQELKVLDLQDNTFTHLGSSALAIALKSWPNLRELGLND-C-LLS 257 (386)
T ss_dssp HHHHHHCTTCCEEECCSSCCCHHHHHHHHHTTGGGCTTCCEEECCSSCCHHHHHHHHHHHGGGCTTCCEEECTT-C-CCC
T ss_pred HHHHHhCCCcCEEECcCCCCCHhHHHHHHHHHhhcCCCccEEECcCCCCCcHHHHHHHHHHccCCCcCEEECCC-C-CCc
Confidence 35667778888888744444 3345678888888888753211111111166778888888887 3 333
Q ss_pred cc-----CccccccCCCCCCCCccceEEeccCCCccc-----ccccC-CCCCCccEEeeCCCCCCcccC
Q 018478 260 SF-----PPEDIRMGTTLPLPTSLTSLAIFSFPNLER-----LSSSI-VDLQNLTSLYLVGCPKLKYFP 317 (355)
Q Consensus 260 ~~-----~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~-----l~~~~-~~~~~L~~L~l~~~~~l~~~~ 317 (355)
.. +..+. ....++|++|++++| .++. +|..+ ..+++|++|++++| .++..+
T Consensus 258 ~~~~~~l~~~l~-----~~~~~~L~~L~L~~n-~i~~~g~~~l~~~l~~~l~~L~~L~l~~N-~l~~~~ 319 (386)
T 2ca6_A 258 ARGAAAVVDAFS-----KLENIGLQTLRLQYN-EIELDAVRTLKTVIDEKMPDLLFLELNGN-RFSEED 319 (386)
T ss_dssp HHHHHHHHHHHH-----TCSSCCCCEEECCSS-CCBHHHHHHHHHHHHHHCTTCCEEECTTS-BSCTTS
T ss_pred hhhHHHHHHHHh-----hccCCCeEEEECcCC-cCCHHHHHHHHHHHHhcCCCceEEEccCC-cCCcch
Confidence 32 22210 012578888888884 5554 66655 55788888888887 555443
No 92
>3m19_A Variable lymphocyte receptor A diversity region; adaptive immunity, antibody, T cell, leucine-rich repeat, immune system; 1.70A {Petromyzon marinus} PDB: 3m18_A
Probab=99.57 E-value=3.3e-14 Score=122.68 Aligned_cols=173 Identities=17% Similarity=0.228 Sum_probs=94.3
Q ss_pred CCCcEEEeeccCCcCcccccccCCCCCceEeccccCCCcCCC-CCCCCCCCcceEEEccccCcCcccccccCCCCCceEE
Q 018478 125 TSLETIHIFYCENMKILPSGLHNLRQLQEISIEGCGNLESFP-EGGLPCAKLKEVVIRWCGRLEALPKGLHNLKSLQKLT 203 (355)
Q Consensus 125 ~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~l~~~~-~~~~~~~~L~~L~l~~~~~~~~~p~~l~~~~~L~~L~ 203 (355)
.+.++++++++. ++.+|..+. ++++.|++++| .+..++ ..+..+++|+.|++++|......+..+..+++|++|+
T Consensus 14 ~~~~~l~~~~~~-l~~~p~~~~--~~l~~L~L~~n-~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~ 89 (251)
T 3m19_A 14 EGKKEVDCQGKS-LDSVPSGIP--ADTEKLDLQST-GLATLSDATFRGLTKLTWLNLDYNQLQTLSAGVFDDLTELGTLG 89 (251)
T ss_dssp GGGTEEECTTCC-CSSCCSCCC--TTCCEEECTTS-CCCCCCTTTTTTCTTCCEEECTTSCCCCCCTTTTTTCTTCCEEE
T ss_pred CCCeEEecCCCC-ccccCCCCC--CCCCEEEccCC-CcCccCHhHhcCcccCCEEECCCCcCCccCHhHhccCCcCCEEE
Confidence 355677777655 677776553 57888888876 444444 4566778888888888643333334566666666666
Q ss_pred EeecCcCCCCCCCCccEEEecCCcchhhhhhhhcccCCCCCccceeEecccCCcccccCccccccCCCCCCCCccceEEe
Q 018478 204 IGKGGLEEDGLPTNLHSLDIRGNMEIWKSMIEWGQGFHRFSSLRELRIEGCDDDMVSFPPEDIRMGTTLPLPTSLTSLAI 283 (355)
Q Consensus 204 l~~~~i~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~l 283 (355)
++ +|... ..+... +..+++|++|++++ +.++.++...+ ..+++|++|++
T Consensus 90 L~-------------------~n~l~-~~~~~~---~~~l~~L~~L~L~~--N~l~~~~~~~~------~~l~~L~~L~L 138 (251)
T 3m19_A 90 LA-------------------NNQLA-SLPLGV---FDHLTQLDKLYLGG--NQLKSLPSGVF------DRLTKLKELRL 138 (251)
T ss_dssp CT-------------------TSCCC-CCCTTT---TTTCTTCCEEECCS--SCCCCCCTTTT------TTCTTCCEEEC
T ss_pred CC-------------------CCccc-ccChhH---hcccCCCCEEEcCC--CcCCCcChhHh------ccCCcccEEEC
Confidence 65 33321 111111 34455555555555 34444443321 23455555555
Q ss_pred ccCCCcccccc-cCCCCCCccEEeeCCCCCCcccCCCCC--CCCccEEEecCCc
Q 018478 284 FSFPNLERLSS-SIVDLQNLTSLYLVGCPKLKYFPEKGL--PSSLLELWIGGCP 334 (355)
Q Consensus 284 ~~~~~l~~l~~-~~~~~~~L~~L~l~~~~~l~~~~~~~~--~~~L~~L~l~~c~ 334 (355)
++ +.++.++. .+..+++|++|++++| +++.++...+ +++|++|++.+++
T Consensus 139 s~-N~l~~~~~~~~~~l~~L~~L~L~~N-~l~~~~~~~~~~l~~L~~L~l~~N~ 190 (251)
T 3m19_A 139 NT-NQLQSIPAGAFDKLTNLQTLSLSTN-QLQSVPHGAFDRLGKLQTITLFGNQ 190 (251)
T ss_dssp CS-SCCCCCCTTTTTTCTTCCEEECCSS-CCSCCCTTTTTTCTTCCEEECCSCC
T ss_pred cC-CcCCccCHHHcCcCcCCCEEECCCC-cCCccCHHHHhCCCCCCEEEeeCCc
Confidence 55 34454443 3445555555555555 4555544322 4555555555543
No 93
>3m19_A Variable lymphocyte receptor A diversity region; adaptive immunity, antibody, T cell, leucine-rich repeat, immune system; 1.70A {Petromyzon marinus} PDB: 3m18_A
Probab=99.56 E-value=8.1e-14 Score=120.18 Aligned_cols=168 Identities=21% Similarity=0.265 Sum_probs=104.1
Q ss_pred CCccEEeecccccCcccccCccCCCcceEecccCccccccccccCcCCCCCCCccccccccccEEEecCCCccchhcccc
Q 018478 6 SSLEILEIWSCRSLTYLAAVQLPRSLKRLDIQCCSNIRTLTMEEGIQSSSSSSSRRYTSYLLEELCISSCRSLTSIFSKN 85 (355)
Q Consensus 6 ~~L~~L~l~~~~~l~~l~~~~~~~~L~~L~l~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~~~~~n 85 (355)
++.+++++++ ..++.+| ..+++++++|++++ +.+..++... +..+++|++|+++++ .++.+
T Consensus 14 ~~~~~l~~~~-~~l~~~p-~~~~~~l~~L~L~~-n~l~~~~~~~-----------~~~l~~L~~L~L~~n-~l~~~---- 74 (251)
T 3m19_A 14 EGKKEVDCQG-KSLDSVP-SGIPADTEKLDLQS-TGLATLSDAT-----------FRGLTKLTWLNLDYN-QLQTL---- 74 (251)
T ss_dssp GGGTEEECTT-CCCSSCC-SCCCTTCCEEECTT-SCCCCCCTTT-----------TTTCTTCCEEECTTS-CCCCC----
T ss_pred CCCeEEecCC-CCccccC-CCCCCCCCEEEccC-CCcCccCHhH-----------hcCcccCCEEECCCC-cCCcc----
Confidence 4566777764 4566666 34557788888887 3456555432 455777777777764 34443
Q ss_pred ccchhcccccc--CCCCCcccEEEEccCcchhchh-hhccCCCCCcEEEeeccCCcCcccc-cccCCCCCceEeccccCC
Q 018478 86 ELSATLESLEV--GNLPPSLKSLRVQGCSKLESIA-ETLDNSTSLETIHIFYCENMKILPS-GLHNLRQLQEISIEGCGN 161 (355)
Q Consensus 86 ~~~~~~~~~~~--~~~~~~L~~L~l~~~~~~~~~~-~~~~~l~~L~~L~l~~~~~~~~~~~-~~~~l~~L~~L~l~~~~~ 161 (355)
+. ...+++|+.|++++|. +..++ ..+..+++|++|++++|. +..++. .+..+++|+.|++++| .
T Consensus 75 ---------~~~~~~~l~~L~~L~L~~n~-l~~~~~~~~~~l~~L~~L~L~~N~-l~~~~~~~~~~l~~L~~L~Ls~N-~ 142 (251)
T 3m19_A 75 ---------SAGVFDDLTELGTLGLANNQ-LASLPLGVFDHLTQLDKLYLGGNQ-LKSLPSGVFDRLTKLKELRLNTN-Q 142 (251)
T ss_dssp ---------CTTTTTTCTTCCEEECTTSC-CCCCCTTTTTTCTTCCEEECCSSC-CCCCCTTTTTTCTTCCEEECCSS-C
T ss_pred ---------CHhHhccCCcCCEEECCCCc-ccccChhHhcccCCCCEEEcCCCc-CCCcChhHhccCCcccEEECcCC-c
Confidence 22 1334677777777776 55544 445667777777777776 555543 3566777777777776 5
Q ss_pred CcCCCC-CCCCCCCcceEEEccccCcCccc-ccccCCCCCceEEEe
Q 018478 162 LESFPE-GGLPCAKLKEVVIRWCGRLEALP-KGLHNLKSLQKLTIG 205 (355)
Q Consensus 162 l~~~~~-~~~~~~~L~~L~l~~~~~~~~~p-~~l~~~~~L~~L~l~ 205 (355)
++.++. .+..+++|+.|++++|. ++.++ ..+..+++|++|+++
T Consensus 143 l~~~~~~~~~~l~~L~~L~L~~N~-l~~~~~~~~~~l~~L~~L~l~ 187 (251)
T 3m19_A 143 LQSIPAGAFDKLTNLQTLSLSTNQ-LQSVPHGAFDRLGKLQTITLF 187 (251)
T ss_dssp CCCCCTTTTTTCTTCCEEECCSSC-CSCCCTTTTTTCTTCCEEECC
T ss_pred CCccCHHHcCcCcCCCEEECCCCc-CCccCHHHHhCCCCCCEEEee
Confidence 555554 45667777777777754 33333 355566666655554
No 94
>2ca6_A RAN GTPase-activating protein 1; GAP, GTPase activation, hemihedral twinning, leucine-rich repeat protein, LRR, merohedral twinning; 2.2A {Schizosaccharomyces pombe} SCOP: c.10.1.2 PDB: 1k5g_C* 1k5d_C 1yrg_A
Probab=99.55 E-value=6.4e-16 Score=142.00 Aligned_cols=222 Identities=15% Similarity=0.167 Sum_probs=157.5
Q ss_pred CCcccEEEEccCcchhc-----hhhhccCCCCCcEEEeeccCC--c-Cccccc-------ccCCCCCceEeccccCCCcC
Q 018478 100 PPSLKSLRVQGCSKLES-----IAETLDNSTSLETIHIFYCEN--M-KILPSG-------LHNLRQLQEISIEGCGNLES 164 (355)
Q Consensus 100 ~~~L~~L~l~~~~~~~~-----~~~~~~~l~~L~~L~l~~~~~--~-~~~~~~-------~~~l~~L~~L~l~~~~~l~~ 164 (355)
+++|+.|++++|. +.. ++..+..+++|++|++++|.. + ..+|.. +..+++|+.|++++| .+..
T Consensus 31 ~~~L~~L~L~~n~-i~~~~~~~l~~~l~~~~~L~~L~Ls~~~~~~l~~~~~~~~~~l~~~l~~~~~L~~L~Ls~n-~l~~ 108 (386)
T 2ca6_A 31 DDSVKEIVLSGNT-IGTEAARWLSENIASKKDLEIAEFSDIFTGRVKDEIPEALRLLLQALLKCPKLHTVRLSDN-AFGP 108 (386)
T ss_dssp CSCCCEEECTTSE-ECHHHHHHHHHTTTTCTTCCEEECCSCCTTSCGGGSHHHHHHHHHHHTTCTTCCEEECCSC-CCCT
T ss_pred CCCccEEECCCCC-CCHHHHHHHHHHHHhCCCccEEeCcccccCccccchhHHHHHHHHHHhhCCcccEEECCCC-cCCH
Confidence 4689999999987 432 445577899999999999741 1 123433 368899999999998 4443
Q ss_pred -----CCCCCCCCCCcceEEEccccCcC----cccccccCC---------CCCceEEEeecCcCCC---------CCCCC
Q 018478 165 -----FPEGGLPCAKLKEVVIRWCGRLE----ALPKGLHNL---------KSLQKLTIGKGGLEED---------GLPTN 217 (355)
Q Consensus 165 -----~~~~~~~~~~L~~L~l~~~~~~~----~~p~~l~~~---------~~L~~L~l~~~~i~~~---------~~~~~ 217 (355)
+|..+..+++|+.|++++|.... .++..+..+ ++|++|+++.+.+... ...++
T Consensus 109 ~~~~~l~~~l~~~~~L~~L~L~~n~l~~~~~~~l~~~l~~l~~~~~~~~~~~L~~L~L~~n~l~~~~~~~l~~~l~~~~~ 188 (386)
T 2ca6_A 109 TAQEPLIDFLSKHTPLEHLYLHNNGLGPQAGAKIARALQELAVNKKAKNAPPLRSIICGRNRLENGSMKEWAKTFQSHRL 188 (386)
T ss_dssp TTHHHHHHHHHHCTTCCEEECCSSCCHHHHHHHHHHHHHHHHHHHHHHTCCCCCEEECCSSCCTGGGHHHHHHHHHHCTT
T ss_pred HHHHHHHHHHHhCCCCCEEECcCCCCCHHHHHHHHHHHHHHhhhhhcccCCCCcEEECCCCCCCcHHHHHHHHHHHhCCC
Confidence 45566678999999999976422 223334444 8999999996655422 24579
Q ss_pred ccEEEecCCcchhhhhhhhcc-cCCCCCccceeEecccCCcc-----cccCccccccCCCCCCCCccceEEeccCCCccc
Q 018478 218 LHSLDIRGNMEIWKSMIEWGQ-GFHRFSSLRELRIEGCDDDM-----VSFPPEDIRMGTTLPLPTSLTSLAIFSFPNLER 291 (355)
Q Consensus 218 L~~L~l~~~~~~~~~~~~~~~-~~~~l~~L~~L~l~~~~~~~-----~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~ 291 (355)
|+.|++++|.........+.. .+..+++|++|++++ | .+ ..++..+ ...++|++|++++| .++.
T Consensus 189 L~~L~L~~n~l~~~g~~~l~~~~l~~~~~L~~L~Ls~-n-~l~~~g~~~l~~~l-------~~~~~L~~L~L~~n-~i~~ 258 (386)
T 2ca6_A 189 LHTVKMVQNGIRPEGIEHLLLEGLAYCQELKVLDLQD-N-TFTHLGSSALAIAL-------KSWPNLRELGLNDC-LLSA 258 (386)
T ss_dssp CCEEECCSSCCCHHHHHHHHHTTGGGCTTCCEEECCS-S-CCHHHHHHHHHHHG-------GGCTTCCEEECTTC-CCCH
T ss_pred cCEEECcCCCCCHhHHHHHHHHHhhcCCCccEEECcC-C-CCCcHHHHHHHHHH-------ccCCCcCEEECCCC-CCch
Confidence 999999999754322111111 277889999999998 3 44 4455544 46789999999995 4553
Q ss_pred -----ccccC--CCCCCccEEeeCCCCCCcc-----cCCCC--CCCCccEEEecCCc
Q 018478 292 -----LSSSI--VDLQNLTSLYLVGCPKLKY-----FPEKG--LPSSLLELWIGGCP 334 (355)
Q Consensus 292 -----l~~~~--~~~~~L~~L~l~~~~~l~~-----~~~~~--~~~~L~~L~l~~c~ 334 (355)
++..+ ..+++|++|++++| +++. ++... .+++|++|++.+|+
T Consensus 259 ~~~~~l~~~l~~~~~~~L~~L~L~~n-~i~~~g~~~l~~~l~~~l~~L~~L~l~~N~ 314 (386)
T 2ca6_A 259 RGAAAVVDAFSKLENIGLQTLRLQYN-EIELDAVRTLKTVIDEKMPDLLFLELNGNR 314 (386)
T ss_dssp HHHHHHHHHHHTCSSCCCCEEECCSS-CCBHHHHHHHHHHHHHHCTTCCEEECTTSB
T ss_pred hhHHHHHHHHhhccCCCeEEEECcCC-cCCHHHHHHHHHHHHhcCCCceEEEccCCc
Confidence 35555 34899999999999 6877 55422 26999999999986
No 95
>3goz_A Leucine-rich repeat-containing protein; LEGL7, NESG, LGR148, structural genomics, PSI-2, protein structure initiative; 2.10A {Legionella pneumophila subsp}
Probab=99.52 E-value=3.8e-15 Score=135.69 Aligned_cols=206 Identities=15% Similarity=0.109 Sum_probs=108.9
Q ss_pred cccEEEEccCcchhc-hhhhccCC-----CCCcEEEeeccCCcCc-cccc----ccCC-CCCceEeccccCCCcCCCC-C
Q 018478 102 SLKSLRVQGCSKLES-IAETLDNS-----TSLETIHIFYCENMKI-LPSG----LHNL-RQLQEISIEGCGNLESFPE-G 168 (355)
Q Consensus 102 ~L~~L~l~~~~~~~~-~~~~~~~l-----~~L~~L~l~~~~~~~~-~~~~----~~~l-~~L~~L~l~~~~~l~~~~~-~ 168 (355)
+|+.|++++|. +.. .+..+..+ ++|++|++++|. ++. .+.. +..+ ++|+.|++++| .++..+. .
T Consensus 52 ~L~~L~Ls~N~-l~~~~~~~l~~~l~~~~~~L~~L~Ls~n~-l~~~~~~~l~~~l~~~~~~L~~L~Ls~N-~l~~~~~~~ 128 (362)
T 3goz_A 52 SVTSLNLSGNS-LGFKNSDELVQILAAIPANVTSLNLSGNF-LSYKSSDELVKTLAAIPFTITVLDLGWN-DFSSKSSSE 128 (362)
T ss_dssp TCCEEECCSSC-GGGSCHHHHHHHHHTSCTTCCEEECCSSC-GGGSCHHHHHHHHHTSCTTCCEEECCSS-CGGGSCHHH
T ss_pred ceeEEECcCCC-CCHHHHHHHHHHHhccCCCccEEECcCCc-CChHHHHHHHHHHHhCCCCccEEECcCC-cCCcHHHHH
Confidence 67888887776 443 23333332 778888887777 433 2222 3334 67788888776 3444332 1
Q ss_pred ----CCC-CCCcceEEEccccCcC----cccccccCCC-CCceEEEeecCcCCCC----------CCCCccEEEecCCcc
Q 018478 169 ----GLP-CAKLKEVVIRWCGRLE----ALPKGLHNLK-SLQKLTIGKGGLEEDG----------LPTNLHSLDIRGNME 228 (355)
Q Consensus 169 ----~~~-~~~L~~L~l~~~~~~~----~~p~~l~~~~-~L~~L~l~~~~i~~~~----------~~~~L~~L~l~~~~~ 228 (355)
+.. .++|++|++++|.... .++..+...+ +|++|+++.+.+...+ .+++|+.|++++|..
T Consensus 129 l~~~l~~~~~~L~~L~Ls~N~l~~~~~~~l~~~l~~~~~~L~~L~Ls~n~l~~~~~~~l~~~l~~~~~~L~~L~Ls~N~i 208 (362)
T 3goz_A 129 FKQAFSNLPASITSLNLRGNDLGIKSSDELIQILAAIPANVNSLNLRGNNLASKNCAELAKFLASIPASVTSLDLSANLL 208 (362)
T ss_dssp HHHHHTTSCTTCCEEECTTSCGGGSCHHHHHHHHHTSCTTCCEEECTTSCGGGSCHHHHHHHHHTSCTTCCEEECTTSCG
T ss_pred HHHHHHhCCCceeEEEccCCcCCHHHHHHHHHHHhcCCccccEeeecCCCCchhhHHHHHHHHHhCCCCCCEEECCCCCC
Confidence 112 2477778877754321 2333444444 7777777755444322 114777777777764
Q ss_pred hhhhhhhhcccCCC-CCccceeEecccCCcccccCccccccCCCCCCCCccceEEeccCC-------CcccccccCCCCC
Q 018478 229 IWKSMIEWGQGFHR-FSSLRELRIEGCDDDMVSFPPEDIRMGTTLPLPTSLTSLAIFSFP-------NLERLSSSIVDLQ 300 (355)
Q Consensus 229 ~~~~~~~~~~~~~~-l~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~-------~l~~l~~~~~~~~ 300 (355)
...........+.. .++|++|++++ +.+...+...+. ......++|++|++++|. .+..++..+..++
T Consensus 209 ~~~~~~~l~~~l~~~~~~L~~L~Ls~--N~l~~~~~~~l~--~~~~~l~~L~~L~L~~n~l~~i~~~~~~~l~~~~~~l~ 284 (362)
T 3goz_A 209 GLKSYAELAYIFSSIPNHVVSLNLCL--NCLHGPSLENLK--LLKDSLKHLQTVYLDYDIVKNMSKEQCKALGAAFPNIQ 284 (362)
T ss_dssp GGSCHHHHHHHHHHSCTTCCEEECCS--SCCCCCCHHHHH--HTTTTTTTCSEEEEEHHHHTTCCHHHHHHHHTTSTTCC
T ss_pred ChhHHHHHHHHHhcCCCCceEEECcC--CCCCcHHHHHHH--HHHhcCCCccEEEeccCCccccCHHHHHHHHHHhccCC
Confidence 33111111111222 34777777776 344444321100 011344667777777742 1333444556677
Q ss_pred CccEEeeCCCCCCcc
Q 018478 301 NLTSLYLVGCPKLKY 315 (355)
Q Consensus 301 ~L~~L~l~~~~~l~~ 315 (355)
+|+.|++++| ++..
T Consensus 285 ~L~~LdL~~N-~l~~ 298 (362)
T 3goz_A 285 KIILVDKNGK-EIHP 298 (362)
T ss_dssp EEEEECTTSC-BCCG
T ss_pred ceEEEecCCC-cCCC
Confidence 7777777776 4443
No 96
>1h6t_A Internalin B; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.6A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 2wqu_A 2uzy_A 2uzx_A 2wqv_A* 2wqw_A 2wqx_A 1d0b_A 1otn_A 1oto_A 1otm_A
Probab=99.52 E-value=1.5e-13 Score=121.15 Aligned_cols=163 Identities=17% Similarity=0.170 Sum_probs=86.7
Q ss_pred CCcceEecccCccccccccccCcCCCCCCCccccccccccEEEecCCCccchhccccccchhccccccCCCCCcccEEEE
Q 018478 29 RSLKRLDIQCCSNIRTLTMEEGIQSSSSSSSRRYTSYLLEELCISSCRSLTSIFSKNELSATLESLEVGNLPPSLKSLRV 108 (355)
Q Consensus 29 ~~L~~L~l~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~~~~~n~~~~~~~~~~~~~~~~~L~~L~l 108 (355)
++|++|+++++ .++.++. +..+++|+.|+++++ .++.+ +....+++|+.|++
T Consensus 46 ~~L~~L~l~~~-~i~~~~~-------------~~~l~~L~~L~L~~n-~l~~~-------------~~l~~l~~L~~L~l 97 (291)
T 1h6t_A 46 NSIDQIIANNS-DIKSVQG-------------IQYLPNVTKLFLNGN-KLTDI-------------KPLANLKNLGWLFL 97 (291)
T ss_dssp HTCCEEECTTS-CCCCCTT-------------GGGCTTCCEEECCSS-CCCCC-------------GGGTTCTTCCEEEC
T ss_pred CcccEEEccCC-CcccChh-------------HhcCCCCCEEEccCC-ccCCC-------------cccccCCCCCEEEC
Confidence 55666666663 3444432 122556666666654 33333 22333456666666
Q ss_pred ccCcchhchhhhccCCCCCcEEEeeccCCcCcccccccCCCCCceEeccccCCCcCCCCCCCCCCCcceEEEccccCcCc
Q 018478 109 QGCSKLESIAETLDNSTSLETIHIFYCENMKILPSGLHNLRQLQEISIEGCGNLESFPEGGLPCAKLKEVVIRWCGRLEA 188 (355)
Q Consensus 109 ~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~l~~~~~~~~~~~~L~~L~l~~~~~~~~ 188 (355)
++|. +..++. +..+++|++|++++|. +..+ ..+..+++|+.|++++| .++.+ ..+..+++|+.|++++| .++.
T Consensus 98 ~~n~-l~~~~~-l~~l~~L~~L~L~~n~-i~~~-~~l~~l~~L~~L~l~~n-~l~~~-~~l~~l~~L~~L~L~~N-~l~~ 170 (291)
T 1h6t_A 98 DENK-VKDLSS-LKDLKKLKSLSLEHNG-ISDI-NGLVHLPQLESLYLGNN-KITDI-TVLSRLTKLDTLSLEDN-QISD 170 (291)
T ss_dssp CSSC-CCCGGG-GTTCTTCCEEECTTSC-CCCC-GGGGGCTTCCEEECCSS-CCCCC-GGGGGCTTCSEEECCSS-CCCC
T ss_pred CCCc-CCCChh-hccCCCCCEEECCCCc-CCCC-hhhcCCCCCCEEEccCC-cCCcc-hhhccCCCCCEEEccCC-cccc
Confidence 6655 444433 5556666666666655 4444 24555666666666665 34444 33445566666666664 3333
Q ss_pred ccccccCCCCCceEEEeecC---cCCCCCCCCccEEEecCCc
Q 018478 189 LPKGLHNLKSLQKLTIGKGG---LEEDGLPTNLHSLDIRGNM 227 (355)
Q Consensus 189 ~p~~l~~~~~L~~L~l~~~~---i~~~~~~~~L~~L~l~~~~ 227 (355)
++. +..+++|+.|+++.+. ++....+++|+.|++++|.
T Consensus 171 ~~~-l~~l~~L~~L~L~~N~i~~l~~l~~l~~L~~L~l~~n~ 211 (291)
T 1h6t_A 171 IVP-LAGLTKLQNLYLSKNHISDLRALAGLKNLDVLELFSQE 211 (291)
T ss_dssp CGG-GTTCTTCCEEECCSSCCCBCGGGTTCTTCSEEEEEEEE
T ss_pred chh-hcCCCccCEEECCCCcCCCChhhccCCCCCEEECcCCc
Confidence 333 5566666666666322 2333445666666666665
No 97
>1h6t_A Internalin B; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.6A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 2wqu_A 2uzy_A 2uzx_A 2wqv_A* 2wqw_A 2wqx_A 1d0b_A 1otn_A 1oto_A 1otm_A
Probab=99.52 E-value=6.2e-14 Score=123.64 Aligned_cols=163 Identities=18% Similarity=0.228 Sum_probs=101.3
Q ss_pred ccccccEEEecCCCccchhccccccchhccccccCCCCCcccEEEEccCcchhchhhhccCCCCCcEEEeeccCCcCccc
Q 018478 63 TSYLLEELCISSCRSLTSIFSKNELSATLESLEVGNLPPSLKSLRVQGCSKLESIAETLDNSTSLETIHIFYCENMKILP 142 (355)
Q Consensus 63 ~~~~L~~L~l~~~~~l~~~~~~n~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~ 142 (355)
.+++|+.|+++++ .++.+ +....+++|+.|++++|. +..+++ +..+++|++|++++|. +..++
T Consensus 44 ~l~~L~~L~l~~~-~i~~~-------------~~~~~l~~L~~L~L~~n~-l~~~~~-l~~l~~L~~L~l~~n~-l~~~~ 106 (291)
T 1h6t_A 44 ELNSIDQIIANNS-DIKSV-------------QGIQYLPNVTKLFLNGNK-LTDIKP-LANLKNLGWLFLDENK-VKDLS 106 (291)
T ss_dssp HHHTCCEEECTTS-CCCCC-------------TTGGGCTTCCEEECCSSC-CCCCGG-GTTCTTCCEEECCSSC-CCCGG
T ss_pred hcCcccEEEccCC-CcccC-------------hhHhcCCCCCEEEccCCc-cCCCcc-cccCCCCCEEECCCCc-CCCCh
Confidence 3777888888775 44554 434445788888888876 666665 7778888888888876 55554
Q ss_pred ccccCCCCCceEeccccCCCcCCCCCCCCCCCcceEEEccccCcCcccccccCCCCCceEEEeecCcC---CCCCCCCcc
Q 018478 143 SGLHNLRQLQEISIEGCGNLESFPEGGLPCAKLKEVVIRWCGRLEALPKGLHNLKSLQKLTIGKGGLE---EDGLPTNLH 219 (355)
Q Consensus 143 ~~~~~l~~L~~L~l~~~~~l~~~~~~~~~~~~L~~L~l~~~~~~~~~p~~l~~~~~L~~L~l~~~~i~---~~~~~~~L~ 219 (355)
. +..+++|+.|++++| .+..+ ..+..+++|+.|++++|. ++.+ ..+..+++|++|+++.+.+. ....+++|+
T Consensus 107 ~-l~~l~~L~~L~L~~n-~i~~~-~~l~~l~~L~~L~l~~n~-l~~~-~~l~~l~~L~~L~L~~N~l~~~~~l~~l~~L~ 181 (291)
T 1h6t_A 107 S-LKDLKKLKSLSLEHN-GISDI-NGLVHLPQLESLYLGNNK-ITDI-TVLSRLTKLDTLSLEDNQISDIVPLAGLTKLQ 181 (291)
T ss_dssp G-GTTCTTCCEEECTTS-CCCCC-GGGGGCTTCCEEECCSSC-CCCC-GGGGGCTTCSEEECCSSCCCCCGGGTTCTTCC
T ss_pred h-hccCCCCCEEECCCC-cCCCC-hhhcCCCCCCEEEccCCc-CCcc-hhhccCCCCCEEEccCCccccchhhcCCCccC
Confidence 3 777888888888876 45555 345567788888888753 4444 45666666666666532222 233345555
Q ss_pred EEEecCCcchhhhhhhhcccCCCCCccceeEecc
Q 018478 220 SLDIRGNMEIWKSMIEWGQGFHRFSSLRELRIEG 253 (355)
Q Consensus 220 ~L~l~~~~~~~~~~~~~~~~~~~l~~L~~L~l~~ 253 (355)
.|++++|.. +..+. +..+++|+.|++++
T Consensus 182 ~L~L~~N~i-~~l~~-----l~~l~~L~~L~l~~ 209 (291)
T 1h6t_A 182 NLYLSKNHI-SDLRA-----LAGLKNLDVLELFS 209 (291)
T ss_dssp EEECCSSCC-CBCGG-----GTTCTTCSEEEEEE
T ss_pred EEECCCCcC-CCChh-----hccCCCCCEEECcC
Confidence 555555532 22221 44455555555554
No 98
>3cvr_A Invasion plasmid antigen; leucine rich repeat and alpha fold, ligase; 2.80A {Shigella flexneri 2A}
Probab=99.51 E-value=1.6e-13 Score=131.33 Aligned_cols=161 Identities=19% Similarity=0.222 Sum_probs=79.5
Q ss_pred CcccEEEEccCcchhchhhhccCCCCCcEEEeeccCCcCcccccccCCCCCceEeccccCCCcCCCCCCCCCCCcceEEE
Q 018478 101 PSLKSLRVQGCSKLESIAETLDNSTSLETIHIFYCENMKILPSGLHNLRQLQEISIEGCGNLESFPEGGLPCAKLKEVVI 180 (355)
Q Consensus 101 ~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~l~~~~~~~~~~~~L~~L~l 180 (355)
++|+.|++++|. ++.+| ..+++|++|++++|. ++.+|. +.. +|+.|++++| .++.+|. .+++|+.|++
T Consensus 80 ~~L~~L~Ls~N~-l~~ip---~~l~~L~~L~Ls~N~-l~~ip~-l~~--~L~~L~Ls~N-~l~~lp~---~l~~L~~L~L 147 (571)
T 3cvr_A 80 PQITVLEITQNA-LISLP---ELPASLEYLDACDNR-LSTLPE-LPA--SLKHLDVDNN-QLTMLPE---LPALLEYINA 147 (571)
T ss_dssp TTCSEEECCSSC-CSCCC---CCCTTCCEEECCSSC-CSCCCC-CCT--TCCEEECCSS-CCSCCCC---CCTTCCEEEC
T ss_pred CCCCEEECcCCC-Ccccc---cccCCCCEEEccCCC-CCCcch-hhc--CCCEEECCCC-cCCCCCC---cCccccEEeC
Confidence 556666666665 55555 335666666666655 444554 333 5666666665 4444554 3456666666
Q ss_pred ccccCcCcccccccCCCCCceEEEeecCcCCCCCCCCccEEEecCCcchhhhhhhhcccCCCCCccceeEecccCCcccc
Q 018478 181 RWCGRLEALPKGLHNLKSLQKLTIGKGGLEEDGLPTNLHSLDIRGNMEIWKSMIEWGQGFHRFSSLRELRIEGCDDDMVS 260 (355)
Q Consensus 181 ~~~~~~~~~p~~l~~~~~L~~L~l~~~~i~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~ 260 (355)
++|. ++.+|. .++ +|+.|++++|... .++. +. ++|++|++++ +.++.
T Consensus 148 s~N~-l~~lp~---~l~-------------------~L~~L~Ls~N~L~-~lp~-----l~--~~L~~L~Ls~--N~L~~ 194 (571)
T 3cvr_A 148 DNNQ-LTMLPE---LPT-------------------SLEVLSVRNNQLT-FLPE-----LP--ESLEALDVST--NLLES 194 (571)
T ss_dssp CSSC-CSCCCC---CCT-------------------TCCEEECCSSCCS-CCCC-----CC--TTCCEEECCS--SCCSS
T ss_pred CCCc-cCcCCC---cCC-------------------CcCEEECCCCCCC-Ccch-----hh--CCCCEEECcC--CCCCc
Confidence 6542 333443 334 4555555554422 1221 11 4555555555 34445
Q ss_pred cCccccccCCCCCCCCccceEEeccCCCcccccccCCCCCCccEEeeCCC
Q 018478 261 FPPEDIRMGTTLPLPTSLTSLAIFSFPNLERLSSSIVDLQNLTSLYLVGC 310 (355)
Q Consensus 261 ~~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~l~~~~~~~~~L~~L~l~~~ 310 (355)
+|. +.. ......+.|+.|++++ +.++.+|..+..+++|+.|++++|
T Consensus 195 lp~-~~~--~L~~~~~~L~~L~Ls~-N~l~~lp~~l~~l~~L~~L~L~~N 240 (571)
T 3cvr_A 195 LPA-VPV--RNHHSEETEIFFRCRE-NRITHIPENILSLDPTCTIILEDN 240 (571)
T ss_dssp CCC-CC----------CCEEEECCS-SCCCCCCGGGGGSCTTEEEECCSS
T ss_pred hhh-HHH--hhhcccccceEEecCC-CcceecCHHHhcCCCCCEEEeeCC
Confidence 544 200 0000011126666665 455556655555666666666665
No 99
>4ezg_A Putative uncharacterized protein; internalin-A, leucine-rich repeat protein, structural genomi center for structural genomics, JCSG; HET: MSE; 1.50A {Listeria monocytogenes}
Probab=99.50 E-value=1.1e-13 Score=114.79 Aligned_cols=125 Identities=16% Similarity=0.166 Sum_probs=56.5
Q ss_pred CCcccEEEEccCcchhchhhhccCCCCCcEEEeeccCCcCcccccccCCCCCceEeccccCCCcCCCCCCCCCCCcceEE
Q 018478 100 PPSLKSLRVQGCSKLESIAETLDNSTSLETIHIFYCENMKILPSGLHNLRQLQEISIEGCGNLESFPEGGLPCAKLKEVV 179 (355)
Q Consensus 100 ~~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~l~~~~~~~~~~~~L~~L~ 179 (355)
+++|+.|++++|. +..++ .+..+++|++|++++|......+..++.+++|+.|++++|......+..+..+++|+.|+
T Consensus 65 l~~L~~L~l~~n~-~~~~~-~l~~l~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~Ls~n~i~~~~~~~l~~l~~L~~L~ 142 (197)
T 4ezg_A 65 AHNIKDLTINNIH-ATNYN-PISGLSNLERLRIMGKDVTSDKIPNLSGLTSLTLLDISHSAHDDSILTKINTLPKVNSID 142 (197)
T ss_dssp CTTCSEEEEESCC-CSCCG-GGTTCTTCCEEEEECTTCBGGGSCCCTTCTTCCEEECCSSBCBGGGHHHHTTCSSCCEEE
T ss_pred CCCCCEEEccCCC-CCcch-hhhcCCCCCEEEeECCccCcccChhhcCCCCCCEEEecCCccCcHhHHHHhhCCCCCEEE
Confidence 3455555555542 33332 344455555555555442222334444555555555555422222333344445555555
Q ss_pred EccccCcCcccccccCCCCCceEEEeecCcC---CCCCCCCccEEEecCCc
Q 018478 180 IRWCGRLEALPKGLHNLKSLQKLTIGKGGLE---EDGLPTNLHSLDIRGNM 227 (355)
Q Consensus 180 l~~~~~~~~~p~~l~~~~~L~~L~l~~~~i~---~~~~~~~L~~L~l~~~~ 227 (355)
+++|..++.+| .+..+++|++|+++.+.+. ....+++|+.|++++|.
T Consensus 143 L~~n~~i~~~~-~l~~l~~L~~L~l~~n~i~~~~~l~~l~~L~~L~l~~N~ 192 (197)
T 4ezg_A 143 LSYNGAITDIM-PLKTLPELKSLNIQFDGVHDYRGIEDFPKLNQLYAFSQT 192 (197)
T ss_dssp CCSCTBCCCCG-GGGGCSSCCEEECTTBCCCCCTTGGGCSSCCEEEECBC-
T ss_pred ccCCCCccccH-hhcCCCCCCEEECCCCCCcChHHhccCCCCCEEEeeCcc
Confidence 55543344443 4455555555555522222 22334556666666554
No 100
>4ezg_A Putative uncharacterized protein; internalin-A, leucine-rich repeat protein, structural genomi center for structural genomics, JCSG; HET: MSE; 1.50A {Listeria monocytogenes}
Probab=99.49 E-value=7.8e-14 Score=115.71 Aligned_cols=144 Identities=13% Similarity=0.148 Sum_probs=115.5
Q ss_pred CCcccEEEEccCcchhchhhhccCCCCCcEEEeeccCCcCcccccccCCCCCceEeccccCCCcCCCCCCCCCCCcceEE
Q 018478 100 PPSLKSLRVQGCSKLESIAETLDNSTSLETIHIFYCENMKILPSGLHNLRQLQEISIEGCGNLESFPEGGLPCAKLKEVV 179 (355)
Q Consensus 100 ~~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~l~~~~~~~~~~~~L~~L~ 179 (355)
+++|+.|++++|. +..+| .+..+++|++|++++|. +..++ .+..+++|+.|++++|..-...+..+..+++|+.|+
T Consensus 43 l~~L~~L~l~~n~-i~~l~-~l~~l~~L~~L~l~~n~-~~~~~-~l~~l~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~ 118 (197)
T 4ezg_A 43 MNSLTYITLANIN-VTDLT-GIEYAHNIKDLTINNIH-ATNYN-PISGLSNLERLRIMGKDVTSDKIPNLSGLTSLTLLD 118 (197)
T ss_dssp HHTCCEEEEESSC-CSCCT-TGGGCTTCSEEEEESCC-CSCCG-GGTTCTTCCEEEEECTTCBGGGSCCCTTCTTCCEEE
T ss_pred cCCccEEeccCCC-ccChH-HHhcCCCCCEEEccCCC-CCcch-hhhcCCCCCEEEeECCccCcccChhhcCCCCCCEEE
Confidence 4689999999987 77777 68889999999999985 66554 688899999999999743334677788899999999
Q ss_pred EccccCcCcccccccCCCCCceEEEeecC-cC---CCCCCCCccEEEecCCcchhhhhhhhcccCCCCCccceeEecc
Q 018478 180 IRWCGRLEALPKGLHNLKSLQKLTIGKGG-LE---EDGLPTNLHSLDIRGNMEIWKSMIEWGQGFHRFSSLRELRIEG 253 (355)
Q Consensus 180 l~~~~~~~~~p~~l~~~~~L~~L~l~~~~-i~---~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~l~~L~~L~l~~ 253 (355)
+++|......+..+..+++|++|+++.+. +. ....+++|+.|++++|... ..+ . +..+++|++|++++
T Consensus 119 Ls~n~i~~~~~~~l~~l~~L~~L~L~~n~~i~~~~~l~~l~~L~~L~l~~n~i~-~~~---~--l~~l~~L~~L~l~~ 190 (197)
T 4ezg_A 119 ISHSAHDDSILTKINTLPKVNSIDLSYNGAITDIMPLKTLPELKSLNIQFDGVH-DYR---G--IEDFPKLNQLYAFS 190 (197)
T ss_dssp CCSSBCBGGGHHHHTTCSSCCEEECCSCTBCCCCGGGGGCSSCCEEECTTBCCC-CCT---T--GGGCSSCCEEEECB
T ss_pred ecCCccCcHhHHHHhhCCCCCEEEccCCCCccccHhhcCCCCCCEEECCCCCCc-ChH---H--hccCCCCCEEEeeC
Confidence 99976555567788999999999998443 33 3456789999999998743 333 2 77889999999998
No 101
>3cvr_A Invasion plasmid antigen; leucine rich repeat and alpha fold, ligase; 2.80A {Shigella flexneri 2A}
Probab=99.48 E-value=2.2e-13 Score=130.48 Aligned_cols=129 Identities=26% Similarity=0.348 Sum_probs=86.1
Q ss_pred CcceEecccCccccccccccCcCCCCCCCccccccccccEEEecCCCccchhccccccchhccccccCCCCCcccEEEEc
Q 018478 30 SLKRLDIQCCSNIRTLTMEEGIQSSSSSSSRRYTSYLLEELCISSCRSLTSIFSKNELSATLESLEVGNLPPSLKSLRVQ 109 (355)
Q Consensus 30 ~L~~L~l~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~~~~~n~~~~~~~~~~~~~~~~~L~~L~l~ 109 (355)
+|+.|+++++ .+..+|... +++|+.|+++++ .++.+ + ..+++|+.|+++
T Consensus 60 ~L~~L~Ls~n-~L~~lp~~l--------------~~~L~~L~Ls~N-~l~~i-------------p--~~l~~L~~L~Ls 108 (571)
T 3cvr_A 60 QFSELQLNRL-NLSSLPDNL--------------PPQITVLEITQN-ALISL-------------P--ELPASLEYLDAC 108 (571)
T ss_dssp TCSEEECCSS-CCSCCCSCC--------------CTTCSEEECCSS-CCSCC-------------C--CCCTTCCEEECC
T ss_pred CccEEEeCCC-CCCccCHhH--------------cCCCCEEECcCC-CCccc-------------c--cccCCCCEEEcc
Confidence 6777777774 466666654 567788887764 45566 6 445778888888
Q ss_pred cCcchhchhhhccCCCCCcEEEeeccCCcCcccccccCCCCCceEeccccCCCcCCCCCCCCCCCcceEEEccccCcCcc
Q 018478 110 GCSKLESIAETLDNSTSLETIHIFYCENMKILPSGLHNLRQLQEISIEGCGNLESFPEGGLPCAKLKEVVIRWCGRLEAL 189 (355)
Q Consensus 110 ~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~l~~~~~~~~~~~~L~~L~l~~~~~~~~~ 189 (355)
+|. +..+|. +.. +|++|++++|. ++.+|. .+++|+.|++++| .++.+|. .+++|+.|++++|. ++.+
T Consensus 109 ~N~-l~~ip~-l~~--~L~~L~Ls~N~-l~~lp~---~l~~L~~L~Ls~N-~l~~lp~---~l~~L~~L~Ls~N~-L~~l 175 (571)
T 3cvr_A 109 DNR-LSTLPE-LPA--SLKHLDVDNNQ-LTMLPE---LPALLEYINADNN-QLTMLPE---LPTSLEVLSVRNNQ-LTFL 175 (571)
T ss_dssp SSC-CSCCCC-CCT--TCCEEECCSSC-CSCCCC---CCTTCCEEECCSS-CCSCCCC---CCTTCCEEECCSSC-CSCC
T ss_pred CCC-CCCcch-hhc--CCCEEECCCCc-CCCCCC---cCccccEEeCCCC-ccCcCCC---cCCCcCEEECCCCC-CCCc
Confidence 776 666666 543 78888888776 555665 4677888888776 5666665 35678888887753 4556
Q ss_pred cccccCCCCCceEEEe
Q 018478 190 PKGLHNLKSLQKLTIG 205 (355)
Q Consensus 190 p~~l~~~~~L~~L~l~ 205 (355)
|. +. ++|+.|+++
T Consensus 176 p~-l~--~~L~~L~Ls 188 (571)
T 3cvr_A 176 PE-LP--ESLEALDVS 188 (571)
T ss_dssp CC-CC--TTCCEEECC
T ss_pred ch-hh--CCCCEEECc
Confidence 55 43 566666655
No 102
>3goz_A Leucine-rich repeat-containing protein; LEGL7, NESG, LGR148, structural genomics, PSI-2, protein structure initiative; 2.10A {Legionella pneumophila subsp}
Probab=99.46 E-value=1.9e-14 Score=131.00 Aligned_cols=224 Identities=17% Similarity=0.180 Sum_probs=152.0
Q ss_pred CCCCcccEEEEccCcchhchh-----hhccCCC-CCcEEEeeccCCcCcccccccCC-----CCCceEeccccCCCcCCC
Q 018478 98 NLPPSLKSLRVQGCSKLESIA-----ETLDNST-SLETIHIFYCENMKILPSGLHNL-----RQLQEISIEGCGNLESFP 166 (355)
Q Consensus 98 ~~~~~L~~L~l~~~~~~~~~~-----~~~~~l~-~L~~L~l~~~~~~~~~~~~~~~l-----~~L~~L~l~~~~~l~~~~ 166 (355)
..+++|+.|++++|. +...+ ..+..++ +|++|++++|......+..+..+ ++|+.|++++|. ++..+
T Consensus 19 ~~~~~L~~L~Ls~n~-l~~~~~~~l~~~l~~~~~~L~~L~Ls~N~l~~~~~~~l~~~l~~~~~~L~~L~Ls~n~-l~~~~ 96 (362)
T 3goz_A 19 SIPHGVTSLDLSLNN-LYSISTVELIQAFANTPASVTSLNLSGNSLGFKNSDELVQILAAIPANVTSLNLSGNF-LSYKS 96 (362)
T ss_dssp TSCTTCCEEECTTSC-GGGSCHHHHHHHHHTCCTTCCEEECCSSCGGGSCHHHHHHHHHTSCTTCCEEECCSSC-GGGSC
T ss_pred hCCCCceEEEccCCC-CChHHHHHHHHHHHhCCCceeEEECcCCCCCHHHHHHHHHHHhccCCCccEEECcCCc-CChHH
Confidence 555679999999998 65543 5677788 99999999997333334445543 899999999984 54433
Q ss_pred -C----CCCCC-CCcceEEEccccCcCccc-cc----ccC-CCCCceEEEeecCcCCCC----------CCCCccEEEec
Q 018478 167 -E----GGLPC-AKLKEVVIRWCGRLEALP-KG----LHN-LKSLQKLTIGKGGLEEDG----------LPTNLHSLDIR 224 (355)
Q Consensus 167 -~----~~~~~-~~L~~L~l~~~~~~~~~p-~~----l~~-~~~L~~L~l~~~~i~~~~----------~~~~L~~L~l~ 224 (355)
. .+..+ ++|+.|++++|. ++..+ .. +.. .++|++|+++.+.+...+ .+++|+.|+++
T Consensus 97 ~~~l~~~l~~~~~~L~~L~Ls~N~-l~~~~~~~l~~~l~~~~~~L~~L~Ls~N~l~~~~~~~l~~~l~~~~~~L~~L~Ls 175 (362)
T 3goz_A 97 SDELVKTLAAIPFTITVLDLGWND-FSSKSSSEFKQAFSNLPASITSLNLRGNDLGIKSSDELIQILAAIPANVNSLNLR 175 (362)
T ss_dssp HHHHHHHHHTSCTTCCEEECCSSC-GGGSCHHHHHHHHTTSCTTCCEEECTTSCGGGSCHHHHHHHHHTSCTTCCEEECT
T ss_pred HHHHHHHHHhCCCCccEEECcCCc-CCcHHHHHHHHHHHhCCCceeEEEccCCcCCHHHHHHHHHHHhcCCccccEeeec
Confidence 2 13333 799999999976 44333 23 334 369999999966665322 23599999999
Q ss_pred CCcchhhhhhhhcccCCCC-CccceeEecccCCcccc-----cCccccccCCCCCCCCccceEEeccCCCcccc-----c
Q 018478 225 GNMEIWKSMIEWGQGFHRF-SSLRELRIEGCDDDMVS-----FPPEDIRMGTTLPLPTSLTSLAIFSFPNLERL-----S 293 (355)
Q Consensus 225 ~~~~~~~~~~~~~~~~~~l-~~L~~L~l~~~~~~~~~-----~~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~l-----~ 293 (355)
+|.........+...+..+ ++|++|++++ +.+.. ++..+. ..+++|++|++++ +.++.. .
T Consensus 176 ~n~l~~~~~~~l~~~l~~~~~~L~~L~Ls~--N~i~~~~~~~l~~~l~------~~~~~L~~L~Ls~-N~l~~~~~~~l~ 246 (362)
T 3goz_A 176 GNNLASKNCAELAKFLASIPASVTSLDLSA--NLLGLKSYAELAYIFS------SIPNHVVSLNLCL-NCLHGPSLENLK 246 (362)
T ss_dssp TSCGGGSCHHHHHHHHHTSCTTCCEEECTT--SCGGGSCHHHHHHHHH------HSCTTCCEEECCS-SCCCCCCHHHHH
T ss_pred CCCCchhhHHHHHHHHHhCCCCCCEEECCC--CCCChhHHHHHHHHHh------cCCCCceEEECcC-CCCCcHHHHHHH
Confidence 9975544332222224556 5999999998 45555 333331 1246899999999 466543 3
Q ss_pred ccCCCCCCccEEeeCCCCCCcccCCC---------CCCCCccEEEecCCc
Q 018478 294 SSIVDLQNLTSLYLVGCPKLKYFPEK---------GLPSSLLELWIGGCP 334 (355)
Q Consensus 294 ~~~~~~~~L~~L~l~~~~~l~~~~~~---------~~~~~L~~L~l~~c~ 334 (355)
..+..+++|++|++++| ++..+... ...++|++|++++++
T Consensus 247 ~~~~~l~~L~~L~L~~n-~l~~i~~~~~~~l~~~~~~l~~L~~LdL~~N~ 295 (362)
T 3goz_A 247 LLKDSLKHLQTVYLDYD-IVKNMSKEQCKALGAAFPNIQKIILVDKNGKE 295 (362)
T ss_dssp HTTTTTTTCSEEEEEHH-HHTTCCHHHHHHHHTTSTTCCEEEEECTTSCB
T ss_pred HHHhcCCCccEEEeccC-CccccCHHHHHHHHHHhccCCceEEEecCCCc
Confidence 34578899999999998 43333221 125789999999886
No 103
>1m9s_A Internalin B; cell invasion, GW domains, SH3 domains, signaling protein; 2.65A {Listeria monocytogenes} SCOP: b.1.18.15 b.34.11.1 b.34.11.1 b.34.11.1 c.10.2.1 PDB: 2y5q_A
Probab=99.46 E-value=4e-13 Score=129.91 Aligned_cols=163 Identities=17% Similarity=0.226 Sum_probs=111.0
Q ss_pred ccccccEEEecCCCccchhccccccchhccccccCCCCCcccEEEEccCcchhchhhhccCCCCCcEEEeeccCCcCccc
Q 018478 63 TSYLLEELCISSCRSLTSIFSKNELSATLESLEVGNLPPSLKSLRVQGCSKLESIAETLDNSTSLETIHIFYCENMKILP 142 (355)
Q Consensus 63 ~~~~L~~L~l~~~~~l~~~~~~n~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~ 142 (355)
.+++|+.|+++++ .+..+ +....+++|+.|++++|. +..+++ +..+++|+.|++++|. +..++
T Consensus 41 ~L~~L~~L~l~~n-~i~~l-------------~~l~~l~~L~~L~Ls~N~-l~~~~~-l~~l~~L~~L~Ls~N~-l~~l~ 103 (605)
T 1m9s_A 41 ELNSIDQIIANNS-DIKSV-------------QGIQYLPNVTKLFLNGNK-LTDIKP-LTNLKNLGWLFLDENK-IKDLS 103 (605)
T ss_dssp HHTTCCCCBCTTC-CCCCC-------------TTGGGCTTCCEEECTTSC-CCCCGG-GGGCTTCCEEECCSSC-CCCCT
T ss_pred cCCCCCEEECcCC-CCCCC-------------hHHccCCCCCEEEeeCCC-CCCChh-hccCCCCCEEECcCCC-CCCCh
Confidence 3788888888775 34555 444456788888888877 666665 7778888888888876 55554
Q ss_pred ccccCCCCCceEeccccCCCcCCCCCCCCCCCcceEEEccccCcCcccccccCCCCCceEEEeecCcC---CCCCCCCcc
Q 018478 143 SGLHNLRQLQEISIEGCGNLESFPEGGLPCAKLKEVVIRWCGRLEALPKGLHNLKSLQKLTIGKGGLE---EDGLPTNLH 219 (355)
Q Consensus 143 ~~~~~l~~L~~L~l~~~~~l~~~~~~~~~~~~L~~L~l~~~~~~~~~p~~l~~~~~L~~L~l~~~~i~---~~~~~~~L~ 219 (355)
.+..+++|+.|++++| .+..++ .+..+++|+.|++++|. ++.+ ..+..+++|+.|+++.+.+. ....+++|+
T Consensus 104 -~l~~l~~L~~L~Ls~N-~l~~l~-~l~~l~~L~~L~Ls~N~-l~~l-~~l~~l~~L~~L~Ls~N~l~~~~~l~~l~~L~ 178 (605)
T 1m9s_A 104 -SLKDLKKLKSLSLEHN-GISDIN-GLVHLPQLESLYLGNNK-ITDI-TVLSRLTKLDTLSLEDNQISDIVPLAGLTKLQ 178 (605)
T ss_dssp -TSTTCTTCCEEECTTS-CCCCCG-GGGGCTTCSEEECCSSC-CCCC-GGGGSCTTCSEEECCSSCCCCCGGGTTCTTCC
T ss_pred -hhccCCCCCEEEecCC-CCCCCc-cccCCCccCEEECCCCc-cCCc-hhhcccCCCCEEECcCCcCCCchhhccCCCCC
Confidence 5777888888888876 455543 46667888888888753 4444 46777778888877733332 244566777
Q ss_pred EEEecCCcchhhhhhhhcccCCCCCccceeEecc
Q 018478 220 SLDIRGNMEIWKSMIEWGQGFHRFSSLRELRIEG 253 (355)
Q Consensus 220 ~L~l~~~~~~~~~~~~~~~~~~~l~~L~~L~l~~ 253 (355)
.|++++|... ..+. +..+++|+.|++++
T Consensus 179 ~L~Ls~N~i~-~l~~-----l~~l~~L~~L~L~~ 206 (605)
T 1m9s_A 179 NLYLSKNHIS-DLRA-----LAGLKNLDVLELFS 206 (605)
T ss_dssp EEECCSSCCC-BCGG-----GTTCTTCSEEECCS
T ss_pred EEECcCCCCC-CChH-----HccCCCCCEEEccC
Confidence 7777776533 2322 56677777777776
No 104
>1m9s_A Internalin B; cell invasion, GW domains, SH3 domains, signaling protein; 2.65A {Listeria monocytogenes} SCOP: b.1.18.15 b.34.11.1 b.34.11.1 b.34.11.1 c.10.2.1 PDB: 2y5q_A
Probab=99.44 E-value=4.6e-13 Score=129.45 Aligned_cols=172 Identities=19% Similarity=0.238 Sum_probs=135.5
Q ss_pred cCCCCCcEEEeeccCCcCcccccccCCCCCceEeccccCCCcCCCCCCCCCCCcceEEEccccCcCcccccccCCCCCce
Q 018478 122 DNSTSLETIHIFYCENMKILPSGLHNLRQLQEISIEGCGNLESFPEGGLPCAKLKEVVIRWCGRLEALPKGLHNLKSLQK 201 (355)
Q Consensus 122 ~~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~l~~~~~~~~~~~~L~~L~l~~~~~~~~~p~~l~~~~~L~~ 201 (355)
..+++|+.|++.+|. +..++ .+..+++|+.|++++| .+..++. +..+++|+.|++++| .+..+| .+..+++|+.
T Consensus 40 ~~L~~L~~L~l~~n~-i~~l~-~l~~l~~L~~L~Ls~N-~l~~~~~-l~~l~~L~~L~Ls~N-~l~~l~-~l~~l~~L~~ 113 (605)
T 1m9s_A 40 NELNSIDQIIANNSD-IKSVQ-GIQYLPNVTKLFLNGN-KLTDIKP-LTNLKNLGWLFLDEN-KIKDLS-SLKDLKKLKS 113 (605)
T ss_dssp HHHTTCCCCBCTTCC-CCCCT-TGGGCTTCCEEECTTS-CCCCCGG-GGGCTTCCEEECCSS-CCCCCT-TSTTCTTCCE
T ss_pred hcCCCCCEEECcCCC-CCCCh-HHccCCCCCEEEeeCC-CCCCChh-hccCCCCCEEECcCC-CCCCCh-hhccCCCCCE
Confidence 447899999999887 67675 5888999999999997 5666665 777899999999996 456655 7899999999
Q ss_pred EEEeec---CcCCCCCCCCccEEEecCCcchhhhhhhhcccCCCCCccceeEecccCCcccccCccccccCCCCCCCCcc
Q 018478 202 LTIGKG---GLEEDGLPTNLHSLDIRGNMEIWKSMIEWGQGFHRFSSLRELRIEGCDDDMVSFPPEDIRMGTTLPLPTSL 278 (355)
Q Consensus 202 L~l~~~---~i~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~~~L 278 (355)
|+++.+ .++....+++|+.|++++|.... .. . +..+++|+.|++++ +.+..+++ + ..+++|
T Consensus 114 L~Ls~N~l~~l~~l~~l~~L~~L~Ls~N~l~~-l~---~--l~~l~~L~~L~Ls~--N~l~~~~~-l-------~~l~~L 177 (605)
T 1m9s_A 114 LSLEHNGISDINGLVHLPQLESLYLGNNKITD-IT---V--LSRLTKLDTLSLED--NQISDIVP-L-------AGLTKL 177 (605)
T ss_dssp EECTTSCCCCCGGGGGCTTCSEEECCSSCCCC-CG---G--GGSCTTCSEEECCS--SCCCCCGG-G-------TTCTTC
T ss_pred EEecCCCCCCCccccCCCccCEEECCCCccCC-ch---h--hcccCCCCEEECcC--CcCCCchh-h-------ccCCCC
Confidence 999843 34445567899999999987443 32 2 77899999999998 45666654 3 577899
Q ss_pred ceEEeccCCCcccccccCCCCCCccEEeeCCCCCCcccCC
Q 018478 279 TSLAIFSFPNLERLSSSIVDLQNLTSLYLVGCPKLKYFPE 318 (355)
Q Consensus 279 ~~L~l~~~~~l~~l~~~~~~~~~L~~L~l~~~~~l~~~~~ 318 (355)
+.|++++ +.+..++ .+..+++|+.|++++| ++...|.
T Consensus 178 ~~L~Ls~-N~i~~l~-~l~~l~~L~~L~L~~N-~l~~~p~ 214 (605)
T 1m9s_A 178 QNLYLSK-NHISDLR-ALAGLKNLDVLELFSQ-ECLNKPI 214 (605)
T ss_dssp CEEECCS-SCCCBCG-GGTTCTTCSEEECCSE-EEECCCC
T ss_pred CEEECcC-CCCCCCh-HHccCCCCCEEEccCC-cCcCCcc
Confidence 9999998 5777775 4788999999999998 5665544
No 105
>1xeu_A Internalin C; cellular invasion, leucine-rich repeat, cell invasion; 2.05A {Listeria monocytogenes}
Probab=99.41 E-value=2.2e-13 Score=118.23 Aligned_cols=138 Identities=17% Similarity=0.196 Sum_probs=85.0
Q ss_pred CcccEEEEccCcchhchhhhccCCCCCcEEEeeccCCcCcccccccCCCCCceEeccccCCCcCCCCCCCCCCCcceEEE
Q 018478 101 PSLKSLRVQGCSKLESIAETLDNSTSLETIHIFYCENMKILPSGLHNLRQLQEISIEGCGNLESFPEGGLPCAKLKEVVI 180 (355)
Q Consensus 101 ~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~l~~~~~~~~~~~~L~~L~l 180 (355)
.++..++++.+. +..++ .+..+++|++|++++|. +..++ .+..+++|+.|++++| .+..++. +..+++|+.|++
T Consensus 19 ~~l~~l~l~~~~-i~~~~-~~~~l~~L~~L~l~~n~-i~~l~-~l~~l~~L~~L~L~~N-~i~~~~~-l~~l~~L~~L~L 92 (263)
T 1xeu_A 19 ANAVKQNLGKQS-VTDLV-SQKELSGVQNFNGDNSN-IQSLA-GMQFFTNLKELHLSHN-QISDLSP-LKDLTKLEELSV 92 (263)
T ss_dssp HHHHHHHHTCSC-TTSEE-CHHHHTTCSEEECTTSC-CCCCT-TGGGCTTCCEEECCSS-CCCCCGG-GTTCSSCCEEEC
T ss_pred HHHHHHHhcCCC-ccccc-chhhcCcCcEEECcCCC-cccch-HHhhCCCCCEEECCCC-ccCCChh-hccCCCCCEEEC
Confidence 456777777766 66555 45567888999988876 66676 5778888999999887 5666665 677888888888
Q ss_pred ccccCcCcccccccCCCCCceEEEeecC---cCCCCCCCCccEEEecCCcchhhhhhhhcccCCCCCccceeEecc
Q 018478 181 RWCGRLEALPKGLHNLKSLQKLTIGKGG---LEEDGLPTNLHSLDIRGNMEIWKSMIEWGQGFHRFSSLRELRIEG 253 (355)
Q Consensus 181 ~~~~~~~~~p~~l~~~~~L~~L~l~~~~---i~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~l~~L~~L~l~~ 253 (355)
++| .++.+|.. .. ++|++|+++.+. ++....+++|+.|++++|.... .+. +..+++|++|++++
T Consensus 93 ~~N-~l~~l~~~-~~-~~L~~L~L~~N~l~~~~~l~~l~~L~~L~Ls~N~i~~-~~~-----l~~l~~L~~L~L~~ 159 (263)
T 1xeu_A 93 NRN-RLKNLNGI-PS-ACLSRLFLDNNELRDTDSLIHLKNLEILSIRNNKLKS-IVM-----LGFLSKLEVLDLHG 159 (263)
T ss_dssp CSS-CCSCCTTC-CC-SSCCEEECCSSCCSBSGGGTTCTTCCEEECTTSCCCB-CGG-----GGGCTTCCEEECTT
T ss_pred CCC-ccCCcCcc-cc-CcccEEEccCCccCCChhhcCcccccEEECCCCcCCC-ChH-----HccCCCCCEEECCC
Confidence 885 44555432 22 566666665222 2223344455555555544221 211 34445555555554
No 106
>1xeu_A Internalin C; cellular invasion, leucine-rich repeat, cell invasion; 2.05A {Listeria monocytogenes}
Probab=99.39 E-value=3.5e-13 Score=117.01 Aligned_cols=147 Identities=22% Similarity=0.309 Sum_probs=106.4
Q ss_pred CCCcccEEEEccCcchhchhhhccCCCCCcEEEeeccCCcCcccccccCCCCCceEeccccCCCcCCCCCCCCCCCcceE
Q 018478 99 LPPSLKSLRVQGCSKLESIAETLDNSTSLETIHIFYCENMKILPSGLHNLRQLQEISIEGCGNLESFPEGGLPCAKLKEV 178 (355)
Q Consensus 99 ~~~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~l~~~~~~~~~~~~L~~L 178 (355)
.+++|+.|++++|. +..++ .+..+++|++|++++|. +..++. +..+++|+.|++++| .++.+|.... ++|+.|
T Consensus 39 ~l~~L~~L~l~~n~-i~~l~-~l~~l~~L~~L~L~~N~-i~~~~~-l~~l~~L~~L~L~~N-~l~~l~~~~~--~~L~~L 111 (263)
T 1xeu_A 39 ELSGVQNFNGDNSN-IQSLA-GMQFFTNLKELHLSHNQ-ISDLSP-LKDLTKLEELSVNRN-RLKNLNGIPS--ACLSRL 111 (263)
T ss_dssp HHTTCSEEECTTSC-CCCCT-TGGGCTTCCEEECCSSC-CCCCGG-GTTCSSCCEEECCSS-CCSCCTTCCC--SSCCEE
T ss_pred hcCcCcEEECcCCC-cccch-HHhhCCCCCEEECCCCc-cCCChh-hccCCCCCEEECCCC-ccCCcCcccc--CcccEE
Confidence 34678888888876 66666 56778888888888876 666665 778888888888886 5666665333 788888
Q ss_pred EEccccCcCcccccccCCCCCceEEEeecCc---CCCCCCCCccEEEecCCcchhhhhhhhcccCCCCCccceeEecccC
Q 018478 179 VIRWCGRLEALPKGLHNLKSLQKLTIGKGGL---EEDGLPTNLHSLDIRGNMEIWKSMIEWGQGFHRFSSLRELRIEGCD 255 (355)
Q Consensus 179 ~l~~~~~~~~~p~~l~~~~~L~~L~l~~~~i---~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~l~~L~~L~l~~~~ 255 (355)
++++| .++.++ .+..+++|++|+++.+.+ +....+++|+.|++++|..... . . +..+++|+.|++++
T Consensus 112 ~L~~N-~l~~~~-~l~~l~~L~~L~Ls~N~i~~~~~l~~l~~L~~L~L~~N~i~~~-~---~--l~~l~~L~~L~l~~-- 181 (263)
T 1xeu_A 112 FLDNN-ELRDTD-SLIHLKNLEILSIRNNKLKSIVMLGFLSKLEVLDLHGNEITNT-G---G--LTRLKKVNWIDLTG-- 181 (263)
T ss_dssp ECCSS-CCSBSG-GGTTCTTCCEEECTTSCCCBCGGGGGCTTCCEEECTTSCCCBC-T---T--STTCCCCCEEEEEE--
T ss_pred EccCC-ccCCCh-hhcCcccccEEECCCCcCCCChHHccCCCCCEEECCCCcCcch-H---H--hccCCCCCEEeCCC--
Confidence 88885 455554 578888888888884433 3345668899999998874432 2 2 78889999999998
Q ss_pred CcccccC
Q 018478 256 DDMVSFP 262 (355)
Q Consensus 256 ~~~~~~~ 262 (355)
+.+...+
T Consensus 182 N~~~~~~ 188 (263)
T 1xeu_A 182 QKCVNEP 188 (263)
T ss_dssp EEEECCC
T ss_pred CcccCCc
Confidence 4444444
No 107
>2v9t_B SLIT homolog 2 protein N-product; structural protein-receptor complex, developmental protein, domain, roundabout, chemotaxis, LRR domain; 1.70A {Homo sapiens} PDB: 2v9s_A
Probab=99.36 E-value=9.7e-12 Score=104.87 Aligned_cols=107 Identities=10% Similarity=0.176 Sum_probs=59.7
Q ss_pred CCcccEEEEccCcchhch-hhhccCCCCCcEEEeeccCCcCcccc-cccCCCCCceEeccccCCCcCC-CCCCCCCCCcc
Q 018478 100 PPSLKSLRVQGCSKLESI-AETLDNSTSLETIHIFYCENMKILPS-GLHNLRQLQEISIEGCGNLESF-PEGGLPCAKLK 176 (355)
Q Consensus 100 ~~~L~~L~l~~~~~~~~~-~~~~~~l~~L~~L~l~~~~~~~~~~~-~~~~l~~L~~L~l~~~~~l~~~-~~~~~~~~~L~ 176 (355)
+++|+.|++++|. +..+ |..+..+++|++|++++|. +..++. .+..+++|+.|++++| .+..+ |..+..+++|+
T Consensus 55 l~~L~~L~Ls~N~-i~~~~~~~~~~l~~L~~L~Ls~N~-l~~l~~~~f~~l~~L~~L~L~~N-~l~~~~~~~~~~l~~L~ 131 (220)
T 2v9t_B 55 YKKLRRIDLSNNQ-ISELAPDAFQGLRSLNSLVLYGNK-ITELPKSLFEGLFSLQLLLLNAN-KINCLRVDAFQDLHNLN 131 (220)
T ss_dssp CTTCCEEECCSSC-CCEECTTTTTTCSSCCEEECCSSC-CCCCCTTTTTTCTTCCEEECCSS-CCCCCCTTTTTTCTTCC
T ss_pred CCCCCEEECCCCc-CCCcCHHHhhCCcCCCEEECCCCc-CCccCHhHccCCCCCCEEECCCC-CCCEeCHHHcCCCCCCC
Confidence 3566666666665 4333 4556666666666666655 444443 2455666666666665 34433 34455566666
Q ss_pred eEEEccccCcCcccccccCCCCCceEEEeecCc
Q 018478 177 EVVIRWCGRLEALPKGLHNLKSLQKLTIGKGGL 209 (355)
Q Consensus 177 ~L~l~~~~~~~~~p~~l~~~~~L~~L~l~~~~i 209 (355)
.|++++|......+..+..+++|++|+++.+.+
T Consensus 132 ~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~~ 164 (220)
T 2v9t_B 132 LLSLYDNKLQTIAKGTFSPLRAIQTMHLAQNPF 164 (220)
T ss_dssp EEECCSSCCSCCCTTTTTTCTTCCEEECCSSCE
T ss_pred EEECCCCcCCEECHHHHhCCCCCCEEEeCCCCc
Confidence 666666433222223456666666666654333
No 108
>2v70_A SLIT-2, SLIT homolog 2 protein N-product; neurogenesis, glycoprotein, secreted, chemotaxis, LRR structural protein, differentiation; HET: NAG; 3.01A {Homo sapiens}
Probab=99.35 E-value=8.1e-12 Score=105.35 Aligned_cols=103 Identities=11% Similarity=0.202 Sum_probs=54.0
Q ss_pred CCcccEEEEccCcchhchh-hhccCCCCCcEEEeeccCCcCcc-cccccCCCCCceEeccccCCCcCC-CCCCCCCCCcc
Q 018478 100 PPSLKSLRVQGCSKLESIA-ETLDNSTSLETIHIFYCENMKIL-PSGLHNLRQLQEISIEGCGNLESF-PEGGLPCAKLK 176 (355)
Q Consensus 100 ~~~L~~L~l~~~~~~~~~~-~~~~~l~~L~~L~l~~~~~~~~~-~~~~~~l~~L~~L~l~~~~~l~~~-~~~~~~~~~L~ 176 (355)
+++|+.|++++|. +..++ ..+..+++|++|++++|. +..+ +..+..+++|+.|++++| .+..+ |..+..+++|+
T Consensus 56 l~~L~~L~L~~N~-i~~i~~~~~~~l~~L~~L~Ls~N~-l~~~~~~~~~~l~~L~~L~Ls~N-~l~~~~~~~~~~l~~L~ 132 (220)
T 2v70_A 56 LPQLRKINFSNNK-ITDIEEGAFEGASGVNEILLTSNR-LENVQHKMFKGLESLKTLMLRSN-RITCVGNDSFIGLSSVR 132 (220)
T ss_dssp CTTCCEEECCSSC-CCEECTTTTTTCTTCCEEECCSSC-CCCCCGGGGTTCSSCCEEECTTS-CCCCBCTTSSTTCTTCS
T ss_pred CCCCCEEECCCCc-CCEECHHHhCCCCCCCEEECCCCc-cCccCHhHhcCCcCCCEEECCCC-cCCeECHhHcCCCccCC
Confidence 3456666666555 44443 245556666666666655 3333 334555666666666665 33333 44455566666
Q ss_pred eEEEccccCcCcccccccCCCCCceEEEe
Q 018478 177 EVVIRWCGRLEALPKGLHNLKSLQKLTIG 205 (355)
Q Consensus 177 ~L~l~~~~~~~~~p~~l~~~~~L~~L~l~ 205 (355)
.|++++|......|..+..+++|++|+++
T Consensus 133 ~L~L~~N~l~~~~~~~~~~l~~L~~L~L~ 161 (220)
T 2v70_A 133 LLSLYDNQITTVAPGAFDTLHSLSTLNLL 161 (220)
T ss_dssp EEECTTSCCCCBCTTTTTTCTTCCEEECC
T ss_pred EEECCCCcCCEECHHHhcCCCCCCEEEec
Confidence 66666643322224455555555554443
No 109
>3e6j_A Variable lymphocyte receptor diversity region; variable lymphocyte receptors, VLR, leucine-rich repeat, LRR adaptive immunity, immune system; HET: DR2; 1.67A {Petromyzon marinus}
Probab=99.34 E-value=1.5e-11 Score=104.41 Aligned_cols=80 Identities=18% Similarity=0.279 Sum_probs=35.8
Q ss_pred CcccEEEEccCcchhchhh-hccCCCCCcEEEeeccCCcCcccccccCCCCCceEeccccCCCcCCCC-CCCCCCCcceE
Q 018478 101 PSLKSLRVQGCSKLESIAE-TLDNSTSLETIHIFYCENMKILPSGLHNLRQLQEISIEGCGNLESFPE-GGLPCAKLKEV 178 (355)
Q Consensus 101 ~~L~~L~l~~~~~~~~~~~-~~~~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~l~~~~~-~~~~~~~L~~L 178 (355)
++|+.|++++|. +..++. .+..+++|++|++++|. +..+|..+..+++|+.|++++| .+..++. .+..+++|+.|
T Consensus 88 ~~L~~L~Ls~N~-l~~l~~~~~~~l~~L~~L~Ls~N~-l~~lp~~~~~l~~L~~L~L~~N-~l~~~~~~~~~~l~~L~~L 164 (229)
T 3e6j_A 88 TQLTVLDLGTNQ-LTVLPSAVFDRLVHLKELFMCCNK-LTELPRGIERLTHLTHLALDQN-QLKSIPHGAFDRLSSLTHA 164 (229)
T ss_dssp TTCCEEECCSSC-CCCCCTTTTTTCTTCCEEECCSSC-CCSCCTTGGGCTTCSEEECCSS-CCCCCCTTTTTTCTTCCEE
T ss_pred CCcCEEECCCCc-CCccChhHhCcchhhCeEeccCCc-ccccCcccccCCCCCEEECCCC-cCCccCHHHHhCCCCCCEE
Confidence 445555555544 333332 23444555555555444 3344444444455555555444 3333332 23334444444
Q ss_pred EEccc
Q 018478 179 VIRWC 183 (355)
Q Consensus 179 ~l~~~ 183 (355)
++++|
T Consensus 165 ~l~~N 169 (229)
T 3e6j_A 165 YLFGN 169 (229)
T ss_dssp ECTTS
T ss_pred EeeCC
Confidence 44443
No 110
>2o6s_A Variable lymphocyte receptor B; leucine-rich repeat protein, LRR, immune system; 1.50A {Eptatretus burgeri}
Probab=99.33 E-value=5e-12 Score=105.62 Aligned_cols=11 Identities=18% Similarity=-0.085 Sum_probs=5.5
Q ss_pred CCccceeEecc
Q 018478 243 FSSLRELRIEG 253 (355)
Q Consensus 243 l~~L~~L~l~~ 253 (355)
+++|+.|+++.
T Consensus 164 ~~~l~~L~~~~ 174 (208)
T 2o6s_A 164 CPGIRYLSEWI 174 (208)
T ss_dssp TTTTHHHHHHH
T ss_pred CCCHHHHHHHH
Confidence 34455555544
No 111
>2v70_A SLIT-2, SLIT homolog 2 protein N-product; neurogenesis, glycoprotein, secreted, chemotaxis, LRR structural protein, differentiation; HET: NAG; 3.01A {Homo sapiens}
Probab=99.33 E-value=2e-11 Score=102.93 Aligned_cols=148 Identities=12% Similarity=0.101 Sum_probs=115.2
Q ss_pred cEEeecccccCcccccCccCCCcceEecccCccccccccccCcCCCCCCCccccccccccEEEecCCCccchhccccccc
Q 018478 9 EILEIWSCRSLTYLAAVQLPRSLKRLDIQCCSNIRTLTMEEGIQSSSSSSSRRYTSYLLEELCISSCRSLTSIFSKNELS 88 (355)
Q Consensus 9 ~~L~l~~~~~l~~l~~~~~~~~L~~L~l~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~~~~~n~~~ 88 (355)
+.+++++ ..++.+| ..+++.+++|++++ +.+..++... .+..+++|++|+++++ .++.+
T Consensus 14 ~~l~~s~-n~l~~iP-~~~~~~~~~L~L~~-N~l~~~~~~~----------~~~~l~~L~~L~L~~N-~i~~i------- 72 (220)
T 2v70_A 14 TTVDCSN-QKLNKIP-EHIPQYTAELRLNN-NEFTVLEATG----------IFKKLPQLRKINFSNN-KITDI------- 72 (220)
T ss_dssp TEEECCS-SCCSSCC-SCCCTTCSEEECCS-SCCCEECCCC----------CGGGCTTCCEEECCSS-CCCEE-------
T ss_pred CEeEeCC-CCcccCc-cCCCCCCCEEEcCC-CcCCccCchh----------hhccCCCCCEEECCCC-cCCEE-------
Confidence 5788875 4677777 45668899999999 5677774321 1466999999999985 45555
Q ss_pred hhcccccc--CCCCCcccEEEEccCcchhchh-hhccCCCCCcEEEeeccCCcCcccccccCCCCCceEeccccCCCcCC
Q 018478 89 ATLESLEV--GNLPPSLKSLRVQGCSKLESIA-ETLDNSTSLETIHIFYCENMKILPSGLHNLRQLQEISIEGCGNLESF 165 (355)
Q Consensus 89 ~~~~~~~~--~~~~~~L~~L~l~~~~~~~~~~-~~~~~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~l~~~ 165 (355)
+. ...+++|+.|++++|. +..++ ..+..+++|++|++++|......+..+..+++|+.|++++| .++.+
T Consensus 73 ------~~~~~~~l~~L~~L~Ls~N~-l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~N-~l~~~ 144 (220)
T 2v70_A 73 ------EEGAFEGASGVNEILLTSNR-LENVQHKMFKGLESLKTLMLRSNRITCVGNDSFIGLSSVRLLSLYDN-QITTV 144 (220)
T ss_dssp ------CTTTTTTCTTCCEEECCSSC-CCCCCGGGGTTCSSCCEEECTTSCCCCBCTTSSTTCTTCSEEECTTS-CCCCB
T ss_pred ------CHHHhCCCCCCCEEECCCCc-cCccCHhHhcCCcCCCEEECCCCcCCeECHhHcCCCccCCEEECCCC-cCCEE
Confidence 33 2456899999999998 66554 55888999999999999844444678899999999999998 56665
Q ss_pred -CCCCCCCCCcceEEEccccC
Q 018478 166 -PEGGLPCAKLKEVVIRWCGR 185 (355)
Q Consensus 166 -~~~~~~~~~L~~L~l~~~~~ 185 (355)
|..+..+++|+.|++++|..
T Consensus 145 ~~~~~~~l~~L~~L~L~~N~l 165 (220)
T 2v70_A 145 APGAFDTLHSLSTLNLLANPF 165 (220)
T ss_dssp CTTTTTTCTTCCEEECCSCCE
T ss_pred CHHHhcCCCCCCEEEecCcCC
Confidence 67788899999999999753
No 112
>2v9t_B SLIT homolog 2 protein N-product; structural protein-receptor complex, developmental protein, domain, roundabout, chemotaxis, LRR domain; 1.70A {Homo sapiens} PDB: 2v9s_A
Probab=99.31 E-value=2.1e-11 Score=102.84 Aligned_cols=125 Identities=13% Similarity=0.206 Sum_probs=75.1
Q ss_pred CcccEEEEccCcchhchhh-hccCCCCCcEEEeeccCCcCcccccccCCCCCceEeccccCCCcCCCCC-CCCCCCcceE
Q 018478 101 PSLKSLRVQGCSKLESIAE-TLDNSTSLETIHIFYCENMKILPSGLHNLRQLQEISIEGCGNLESFPEG-GLPCAKLKEV 178 (355)
Q Consensus 101 ~~L~~L~l~~~~~~~~~~~-~~~~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~l~~~~~~-~~~~~~L~~L 178 (355)
++++.|++++|. +..+++ .+..+++|++|++++|......+..+..+++|+.|++++| .++.+|.. +..+++|+.|
T Consensus 32 ~~l~~L~l~~n~-i~~i~~~~~~~l~~L~~L~Ls~N~i~~~~~~~~~~l~~L~~L~Ls~N-~l~~l~~~~f~~l~~L~~L 109 (220)
T 2v9t_B 32 ETITEIRLEQNT-IKVIPPGAFSPYKKLRRIDLSNNQISELAPDAFQGLRSLNSLVLYGN-KITELPKSLFEGLFSLQLL 109 (220)
T ss_dssp TTCCEEECCSSC-CCEECTTSSTTCTTCCEEECCSSCCCEECTTTTTTCSSCCEEECCSS-CCCCCCTTTTTTCTTCCEE
T ss_pred cCCCEEECCCCc-CCCcCHhHhhCCCCCCEEECCCCcCCCcCHHHhhCCcCCCEEECCCC-cCCccCHhHccCCCCCCEE
Confidence 566777777665 554443 5566677777777776633333556666777777777765 45555543 3456677777
Q ss_pred EEccccCcCcccccccCCCCCceEEEeecCcCC-----CCCCCCccEEEecCCc
Q 018478 179 VIRWCGRLEALPKGLHNLKSLQKLTIGKGGLEE-----DGLPTNLHSLDIRGNM 227 (355)
Q Consensus 179 ~l~~~~~~~~~p~~l~~~~~L~~L~l~~~~i~~-----~~~~~~L~~L~l~~~~ 227 (355)
++++|......|..+..+++|++|+++.+.+.. ...+++|+.|++++|.
T Consensus 110 ~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~ 163 (220)
T 2v9t_B 110 LLNANKINCLRVDAFQDLHNLNLLSLYDNKLQTIAKGTFSPLRAIQTMHLAQNP 163 (220)
T ss_dssp ECCSSCCCCCCTTTTTTCTTCCEEECCSSCCSCCCTTTTTTCTTCCEEECCSSC
T ss_pred ECCCCCCCEeCHHHcCCCCCCCEEECCCCcCCEECHHHHhCCCCCCEEEeCCCC
Confidence 777654333334566667777777776333332 2234667777777665
No 113
>3e6j_A Variable lymphocyte receptor diversity region; variable lymphocyte receptors, VLR, leucine-rich repeat, LRR adaptive immunity, immune system; HET: DR2; 1.67A {Petromyzon marinus}
Probab=99.31 E-value=2e-11 Score=103.58 Aligned_cols=123 Identities=20% Similarity=0.290 Sum_probs=70.8
Q ss_pred CcccEEEEccCcchhch-hhhccCCCCCcEEEeeccCCcCccc-ccccCCCCCceEeccccCCCcCCCCC-CCCCCCcce
Q 018478 101 PSLKSLRVQGCSKLESI-AETLDNSTSLETIHIFYCENMKILP-SGLHNLRQLQEISIEGCGNLESFPEG-GLPCAKLKE 177 (355)
Q Consensus 101 ~~L~~L~l~~~~~~~~~-~~~~~~l~~L~~L~l~~~~~~~~~~-~~~~~l~~L~~L~l~~~~~l~~~~~~-~~~~~~L~~ 177 (355)
++|+.|++++|. +..+ |..+..+++|++|++++|. +..++ ..+..+++|+.|++++| .++.++.. +..+++|+.
T Consensus 40 ~~L~~L~Ls~n~-i~~~~~~~~~~l~~L~~L~L~~N~-l~~i~~~~~~~l~~L~~L~Ls~N-~l~~l~~~~~~~l~~L~~ 116 (229)
T 3e6j_A 40 TNAQILYLHDNQ-ITKLEPGVFDSLINLKELYLGSNQ-LGALPVGVFDSLTQLTVLDLGTN-QLTVLPSAVFDRLVHLKE 116 (229)
T ss_dssp TTCSEEECCSSC-CCCCCTTTTTTCTTCCEEECCSSC-CCCCCTTTTTTCTTCCEEECCSS-CCCCCCTTTTTTCTTCCE
T ss_pred CCCCEEEcCCCc-cCccCHHHhhCccCCcEEECCCCC-CCCcChhhcccCCCcCEEECCCC-cCCccChhHhCcchhhCe
Confidence 566666666665 4333 4455566666666666655 44444 23455666666666665 44454432 345666666
Q ss_pred EEEccccCcCcccccccCCCCCceEEEeecCcCC-----CCCCCCccEEEecCCc
Q 018478 178 VVIRWCGRLEALPKGLHNLKSLQKLTIGKGGLEE-----DGLPTNLHSLDIRGNM 227 (355)
Q Consensus 178 L~l~~~~~~~~~p~~l~~~~~L~~L~l~~~~i~~-----~~~~~~L~~L~l~~~~ 227 (355)
|++++| .++.+|..+..+++|++|+++.+.+.. ...+++|+.|++.+|.
T Consensus 117 L~Ls~N-~l~~lp~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~l~~N~ 170 (229)
T 3e6j_A 117 LFMCCN-KLTELPRGIERLTHLTHLALDQNQLKSIPHGAFDRLSSLTHAYLFGNP 170 (229)
T ss_dssp EECCSS-CCCSCCTTGGGCTTCSEEECCSSCCCCCCTTTTTTCTTCCEEECTTSC
T ss_pred EeccCC-cccccCcccccCCCCCEEECCCCcCCccCHHHHhCCCCCCEEEeeCCC
Confidence 666664 344566666666666666666333222 2334677777777775
No 114
>2xot_A Amphoterin-induced protein 1; cell adhesion, neuronal protein, neurite growth regulation; HET: NAG BMA; 2.00A {Mus musculus}
Probab=99.30 E-value=9.9e-12 Score=112.96 Aligned_cols=158 Identities=21% Similarity=0.246 Sum_probs=82.1
Q ss_pred cEEeecccccCcccccCccCCCcceEecccCccccccccccCcCCCCCCCcccc-ccccccEEEecCCCccchhcccccc
Q 018478 9 EILEIWSCRSLTYLAAVQLPRSLKRLDIQCCSNIRTLTMEEGIQSSSSSSSRRY-TSYLLEELCISSCRSLTSIFSKNEL 87 (355)
Q Consensus 9 ~~L~l~~~~~l~~l~~~~~~~~L~~L~l~~~~~l~~~~~~~~~~~~~~~~~~~~-~~~~L~~L~l~~~~~l~~~~~~n~~ 87 (355)
+.+++++ ..++.+| ..+++.++.|++++ +.+..++... +. .+++|+.|+++++ .++.+
T Consensus 21 ~~l~c~~-~~l~~iP-~~~~~~l~~L~Ls~-N~l~~l~~~~-----------~~~~l~~L~~L~L~~N-~i~~i------ 79 (361)
T 2xot_A 21 NILSCSK-QQLPNVP-QSLPSYTALLDLSH-NNLSRLRAEW-----------TPTRLTNLHSLLLSHN-HLNFI------ 79 (361)
T ss_dssp TEEECCS-SCCSSCC-SSCCTTCSEEECCS-SCCCEECTTS-----------SSSCCTTCCEEECCSS-CCCEE------
T ss_pred CEEEeCC-CCcCccC-ccCCCCCCEEECCC-CCCCccChhh-----------hhhcccccCEEECCCC-cCCcc------
Confidence 3455543 3455555 23445666666666 4455555432 22 4666666666654 33433
Q ss_pred chhcccccc--CCCCCcccEEEEccCcchhchh-hhccCCCCCcEEEeeccCCcCcccccccCCCCCceEeccccCCCcC
Q 018478 88 SATLESLEV--GNLPPSLKSLRVQGCSKLESIA-ETLDNSTSLETIHIFYCENMKILPSGLHNLRQLQEISIEGCGNLES 164 (355)
Q Consensus 88 ~~~~~~~~~--~~~~~~L~~L~l~~~~~~~~~~-~~~~~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~l~~ 164 (355)
+. ...+++|+.|++++|. +..++ ..+..+++|++|++++|......+..+..+++|+.|++++| .+..
T Consensus 80 -------~~~~~~~l~~L~~L~Ls~N~-l~~~~~~~~~~l~~L~~L~L~~N~i~~~~~~~~~~l~~L~~L~L~~N-~l~~ 150 (361)
T 2xot_A 80 -------SSEAFVPVPNLRYLDLSSNH-LHTLDEFLFSDLQALEVLLLYNNHIVVVDRNAFEDMAQLQKLYLSQN-QISR 150 (361)
T ss_dssp -------CTTTTTTCTTCCEEECCSSC-CCEECTTTTTTCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSS-CCCS
T ss_pred -------ChhhccCCCCCCEEECCCCc-CCcCCHHHhCCCcCCCEEECCCCcccEECHHHhCCcccCCEEECCCC-cCCe
Confidence 22 1334566666666665 44443 34555666666666666532223445666666666666665 4555
Q ss_pred CCCCC----CCCCCcceEEEccccCcCccc-ccccCCC
Q 018478 165 FPEGG----LPCAKLKEVVIRWCGRLEALP-KGLHNLK 197 (355)
Q Consensus 165 ~~~~~----~~~~~L~~L~l~~~~~~~~~p-~~l~~~~ 197 (355)
+|... ..+++|+.|++++| .++.+| ..+..++
T Consensus 151 l~~~~~~~~~~l~~L~~L~L~~N-~l~~l~~~~~~~l~ 187 (361)
T 2xot_A 151 FPVELIKDGNKLPKLMLLDLSSN-KLKKLPLTDLQKLP 187 (361)
T ss_dssp CCGGGTC----CTTCCEEECCSS-CCCCCCHHHHHHSC
T ss_pred eCHHHhcCcccCCcCCEEECCCC-CCCccCHHHhhhcc
Confidence 55432 33566666666664 333333 2334443
No 115
>2ell_A Acidic leucine-rich nuclear phosphoprotein 32 FAM B; phapi2 protein, silver-stainable protein SSP29, acidic prote in leucines, structural genomics; NMR {Homo sapiens} PDB: 2rr6_A 2jqd_A
Probab=99.29 E-value=1e-11 Score=100.04 Aligned_cols=128 Identities=15% Similarity=0.134 Sum_probs=84.9
Q ss_pred cCCCcceEecccCcccc--ccccccCcCCCCCCCccccccccccEEEecCCCccchhccccccchhccccccCCCCCccc
Q 018478 27 LPRSLKRLDIQCCSNIR--TLTMEEGIQSSSSSSSRRYTSYLLEELCISSCRSLTSIFSKNELSATLESLEVGNLPPSLK 104 (355)
Q Consensus 27 ~~~~L~~L~l~~~~~l~--~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~~~~~n~~~~~~~~~~~~~~~~~L~ 104 (355)
.+++|++|++++|. +. .+|.. +..+++|+.|+++++. ++.+ .....+++|+
T Consensus 22 ~~~~L~~L~l~~n~-l~~~~i~~~------------~~~l~~L~~L~l~~n~-l~~~-------------~~~~~l~~L~ 74 (168)
T 2ell_A 22 TPAAVRELVLDNCK-SNDGKIEGL------------TAEFVNLEFLSLINVG-LISV-------------SNLPKLPKLK 74 (168)
T ss_dssp CTTSCSEEECCSCB-CBTTBCSSC------------CGGGGGCCEEEEESSC-CCCC-------------SSCCCCSSCC
T ss_pred CcccCCEEECCCCC-CChhhHHHH------------HHhCCCCCEEeCcCCC-CCCh-------------hhhccCCCCC
Confidence 44778888888854 54 55543 2447778888887753 4444 3334456788
Q ss_pred EEEEccCcchhc-hhhhccCCCCCcEEEeeccCCcCccc--ccccCCCCCceEeccccCCCcCCCC----CCCCCCCcce
Q 018478 105 SLRVQGCSKLES-IAETLDNSTSLETIHIFYCENMKILP--SGLHNLRQLQEISIEGCGNLESFPE----GGLPCAKLKE 177 (355)
Q Consensus 105 ~L~l~~~~~~~~-~~~~~~~l~~L~~L~l~~~~~~~~~~--~~~~~l~~L~~L~l~~~~~l~~~~~----~~~~~~~L~~ 177 (355)
.|++++|. +.. +|..+..+++|++|++++|. +..++ ..+..+++|+.|++++| .+...|. .+..+++|+.
T Consensus 75 ~L~Ls~N~-l~~~~~~~~~~l~~L~~L~Ls~N~-l~~~~~~~~l~~l~~L~~L~l~~N-~l~~~~~~~~~~~~~l~~L~~ 151 (168)
T 2ell_A 75 KLELSENR-IFGGLDMLAEKLPNLTHLNLSGNK-LKDISTLEPLKKLECLKSLDLFNC-EVTNLNDYRESVFKLLPQLTY 151 (168)
T ss_dssp EEEEESCC-CCSCCCHHHHHCTTCCEEECBSSS-CCSSGGGGGGSSCSCCCEEECCSS-GGGTSTTHHHHHHTTCSSCCE
T ss_pred EEECcCCc-CchHHHHHHhhCCCCCEEeccCCc-cCcchhHHHHhcCCCCCEEEeeCC-cCcchHHHHHHHHHhCccCcE
Confidence 88888777 444 66666667888888888776 55554 56777777888888776 4555554 5556777777
Q ss_pred EEEcccc
Q 018478 178 VVIRWCG 184 (355)
Q Consensus 178 L~l~~~~ 184 (355)
|++++|.
T Consensus 152 L~l~~n~ 158 (168)
T 2ell_A 152 LDGYDRE 158 (168)
T ss_dssp ETTEETT
T ss_pred ecCCCCC
Confidence 7777753
No 116
>2o6s_A Variable lymphocyte receptor B; leucine-rich repeat protein, LRR, immune system; 1.50A {Eptatretus burgeri}
Probab=99.29 E-value=6.5e-11 Score=98.78 Aligned_cols=80 Identities=23% Similarity=0.318 Sum_probs=36.5
Q ss_pred CcccEEEEccCcchhchhh-hccCCCCCcEEEeeccCCcCcccc-cccCCCCCceEeccccCCCcCCCCC-CCCCCCcce
Q 018478 101 PSLKSLRVQGCSKLESIAE-TLDNSTSLETIHIFYCENMKILPS-GLHNLRQLQEISIEGCGNLESFPEG-GLPCAKLKE 177 (355)
Q Consensus 101 ~~L~~L~l~~~~~~~~~~~-~~~~l~~L~~L~l~~~~~~~~~~~-~~~~l~~L~~L~l~~~~~l~~~~~~-~~~~~~L~~ 177 (355)
++|++|++++|. +..++. .+..+++|++|++++|. +..++. .+..+++|+.|++++| .++.++.. +..+++|+.
T Consensus 76 ~~L~~L~Ls~n~-l~~~~~~~~~~l~~L~~L~L~~N~-l~~~~~~~~~~l~~L~~L~l~~N-~l~~~~~~~~~~l~~L~~ 152 (208)
T 2o6s_A 76 TSLTYLNLSTNQ-LQSLPNGVFDKLTQLKELALNTNQ-LQSLPDGVFDKLTQLKDLRLYQN-QLKSVPDGVFDRLTSLQY 152 (208)
T ss_dssp TTCCEEECCSSC-CCCCCTTTTTTCTTCCEEECCSSC-CCCCCTTTTTTCTTCCEEECCSS-CCSCCCTTTTTTCTTCCE
T ss_pred CCcCEEECCCCc-CCccCHhHhcCccCCCEEEcCCCc-CcccCHhHhccCCcCCEEECCCC-ccceeCHHHhccCCCccE
Confidence 455555555554 333332 23445555555555544 333322 2344555555555554 33333322 333445555
Q ss_pred EEEccc
Q 018478 178 VVIRWC 183 (355)
Q Consensus 178 L~l~~~ 183 (355)
|++++|
T Consensus 153 L~l~~N 158 (208)
T 2o6s_A 153 IWLHDN 158 (208)
T ss_dssp EECCSC
T ss_pred EEecCC
Confidence 555543
No 117
>1dce_A Protein (RAB geranylgeranyltransferase alpha subunit); 2.0 A resolution, N-formylmethionine, alpha subunit; HET: FME; 2.00A {Rattus norvegicus} SCOP: a.118.6.1 b.7.4.1 c.10.2.2 PDB: 1ltx_A*
Probab=99.28 E-value=1.3e-13 Score=132.56 Aligned_cols=120 Identities=18% Similarity=0.161 Sum_probs=60.8
Q ss_pred CCcEEEeeccCCcCcccccccCCCCCceEeccccCCCcCCCCCCCCCCCcceEEEccccCcCcccccccCCCCCceEEEe
Q 018478 126 SLETIHIFYCENMKILPSGLHNLRQLQEISIEGCGNLESFPEGGLPCAKLKEVVIRWCGRLEALPKGLHNLKSLQKLTIG 205 (355)
Q Consensus 126 ~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~l~~~~~~~~~~~~L~~L~l~~~~~~~~~p~~l~~~~~L~~L~l~ 205 (355)
.|+.|++++|. ++.+|. ++.+++|+.|++++| .++.+|..+..+++|+.|++++| .++.+| .++.+++|++|+++
T Consensus 442 ~L~~L~Ls~n~-l~~lp~-~~~l~~L~~L~Ls~N-~l~~lp~~~~~l~~L~~L~Ls~N-~l~~lp-~l~~l~~L~~L~Ls 516 (567)
T 1dce_A 442 DVRVLHLAHKD-LTVLCH-LEQLLLVTHLDLSHN-RLRALPPALAALRCLEVLQASDN-ALENVD-GVANLPRLQELLLC 516 (567)
T ss_dssp TCSEEECTTSC-CSSCCC-GGGGTTCCEEECCSS-CCCCCCGGGGGCTTCCEEECCSS-CCCCCG-GGTTCSSCCEEECC
T ss_pred CceEEEecCCC-CCCCcC-ccccccCcEeecCcc-cccccchhhhcCCCCCEEECCCC-CCCCCc-ccCCCCCCcEEECC
Confidence 35555555554 444544 555555555555554 44455555555555555555553 334444 55555555555555
Q ss_pred ecCcCC------CCCCCCccEEEecCCcchhhhhhhhcccCCCCCccceeEe
Q 018478 206 KGGLEE------DGLPTNLHSLDIRGNMEIWKSMIEWGQGFHRFSSLRELRI 251 (355)
Q Consensus 206 ~~~i~~------~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~l~~L~~L~l 251 (355)
.+.+.. ...+++|+.|++++|.... .++.....+..+++|+.|++
T Consensus 517 ~N~l~~~~~p~~l~~l~~L~~L~L~~N~l~~-~~~~~~~l~~~lp~L~~L~l 567 (567)
T 1dce_A 517 NNRLQQSAAIQPLVSCPRLVLLNLQGNSLCQ-EEGIQERLAEMLPSVSSILT 567 (567)
T ss_dssp SSCCCSSSTTGGGGGCTTCCEEECTTSGGGG-SSSCTTHHHHHCTTCSEEEC
T ss_pred CCCCCCCCCcHHHhcCCCCCEEEecCCcCCC-CccHHHHHHHHCcccCccCC
Confidence 332221 2234566666777765332 22211101234677777753
No 118
>3sb4_A Hypothetical leucine rich repeat protein; LRR, right-handed beta-alpha superhelix, leucine-rich repeat structural genomics; HET: MSE PG4; 1.99A {Bacteroides thetaiotaomicron}
Probab=99.27 E-value=4.6e-11 Score=107.11 Aligned_cols=99 Identities=14% Similarity=0.130 Sum_probs=60.4
Q ss_pred CCCccEEEecCCcchhhhhhhhcccCCCCCccceeEecccCCcccccCccccccCCCCCCCCccc-eEEeccCCCccccc
Q 018478 215 PTNLHSLDIRGNMEIWKSMIEWGQGFHRFSSLRELRIEGCDDDMVSFPPEDIRMGTTLPLPTSLT-SLAIFSFPNLERLS 293 (355)
Q Consensus 215 ~~~L~~L~l~~~~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~~~L~-~L~l~~~~~l~~l~ 293 (355)
+++|+.+++.+|. ++.++.. . |.++++|+.+++.+ + ++.++...+ ....+|+ .+.+.+ .++.++
T Consensus 225 ~~~L~~l~L~~n~-i~~I~~~-a--F~~~~~L~~l~l~~--n-i~~I~~~aF------~~~~~L~~~l~l~~--~l~~I~ 289 (329)
T 3sb4_A 225 MPNLVSLDISKTN-ATTIPDF-T--FAQKKYLLKIKLPH--N-LKTIGQRVF------SNCGRLAGTLELPA--SVTAIE 289 (329)
T ss_dssp CTTCCEEECTTBC-CCEECTT-T--TTTCTTCCEEECCT--T-CCEECTTTT------TTCTTCCEEEEECT--TCCEEC
T ss_pred cCCCeEEECCCCC-cceecHh-h--hhCCCCCCEEECCc--c-cceehHHHh------hCChhccEEEEEcc--cceEEc
Confidence 4677777777654 3333322 2 66777777777766 2 566665443 4556677 777765 555554
Q ss_pred -ccCCCCCCccEEeeCCCCCCcccCCCCC--CCCccEEE
Q 018478 294 -SSIVDLQNLTSLYLVGCPKLKYFPEKGL--PSSLLELW 329 (355)
Q Consensus 294 -~~~~~~~~L~~L~l~~~~~l~~~~~~~~--~~~L~~L~ 329 (355)
..|.++++|+.+++.++ +++.++...+ +++|+.++
T Consensus 290 ~~aF~~c~~L~~l~l~~n-~i~~I~~~aF~~~~~L~~ly 327 (329)
T 3sb4_A 290 FGAFMGCDNLRYVLATGD-KITTLGDELFGNGVPSKLIY 327 (329)
T ss_dssp TTTTTTCTTEEEEEECSS-CCCEECTTTTCTTCCCCEEE
T ss_pred hhhhhCCccCCEEEeCCC-ccCccchhhhcCCcchhhhc
Confidence 35567777777777665 6777766554 56666654
No 119
>1dce_A Protein (RAB geranylgeranyltransferase alpha subunit); 2.0 A resolution, N-formylmethionine, alpha subunit; HET: FME; 2.00A {Rattus norvegicus} SCOP: a.118.6.1 b.7.4.1 c.10.2.2 PDB: 1ltx_A*
Probab=99.25 E-value=3e-14 Score=136.91 Aligned_cols=188 Identities=13% Similarity=0.075 Sum_probs=113.2
Q ss_pred CCCcccEEEEccCcchhchhhhccCCCCCcEEEeeccC-------------CcCcccccccCCCCCceEe-ccccC----
Q 018478 99 LPPSLKSLRVQGCSKLESIAETLDNSTSLETIHIFYCE-------------NMKILPSGLHNLRQLQEIS-IEGCG---- 160 (355)
Q Consensus 99 ~~~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~-------------~~~~~~~~~~~l~~L~~L~-l~~~~---- 160 (355)
..++|+.|++++|. ++.+|+.++.+++|+.|++++|. .....|..++.+++|+.|+ ++.+.
T Consensus 347 ~~~~L~~L~Ls~n~-L~~Lp~~i~~l~~L~~L~l~~n~~l~~l~~ll~~~~~~~~~~~~l~~l~~L~~L~~l~~n~~~~L 425 (567)
T 1dce_A 347 TDEQLFRCELSVEK-STVLQSELESCKELQELEPENKWCLLTIILLMRALDPLLYEKETLQYFSTLKAVDPMRAAYLDDL 425 (567)
T ss_dssp TTTTSSSCCCCHHH-HHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHCTGGGHHHHHHHHHHHHHHCGGGHHHHHHH
T ss_pred cCccceeccCChhh-HHhhHHHHHHHHHHHHhccccchhhhhHHHHHHhcccccCCHHHHHHHHhcccCcchhhcccchh
Confidence 34677788888776 77778777777888887775543 2233445555666666666 33220
Q ss_pred --------CCcCCCCCCCCCCCcceEEEccccCcCcccccccCCCCCceEEEeecCcCCCCCCCCccEEEecCCcchhhh
Q 018478 161 --------NLESFPEGGLPCAKLKEVVIRWCGRLEALPKGLHNLKSLQKLTIGKGGLEEDGLPTNLHSLDIRGNMEIWKS 232 (355)
Q Consensus 161 --------~l~~~~~~~~~~~~L~~L~l~~~~~~~~~p~~l~~~~~L~~L~l~~~~i~~~~~~~~L~~L~l~~~~~~~~~ 232 (355)
.+..++. ..|+.|++++| .++.+|. ++.++ +|+.|++++|... .+
T Consensus 426 ~~l~l~~n~i~~l~~-----~~L~~L~Ls~n-~l~~lp~-~~~l~-------------------~L~~L~Ls~N~l~-~l 478 (567)
T 1dce_A 426 RSKFLLENSVLKMEY-----ADVRVLHLAHK-DLTVLCH-LEQLL-------------------LVTHLDLSHNRLR-AL 478 (567)
T ss_dssp HHHHHHHHHHHHHHH-----TTCSEEECTTS-CCSSCCC-GGGGT-------------------TCCEEECCSSCCC-CC
T ss_pred hhhhhhcccccccCc-----cCceEEEecCC-CCCCCcC-ccccc-------------------cCcEeecCccccc-cc
Confidence 1111111 13555666553 3444443 44444 4444555555432 33
Q ss_pred hhhhcccCCCCCccceeEecccCCcccccCccccccCCCCCCCCccceEEeccCCCcccc--cccCCCCCCccEEeeCCC
Q 018478 233 MIEWGQGFHRFSSLRELRIEGCDDDMVSFPPEDIRMGTTLPLPTSLTSLAIFSFPNLERL--SSSIVDLQNLTSLYLVGC 310 (355)
Q Consensus 233 ~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~l--~~~~~~~~~L~~L~l~~~ 310 (355)
+. . +..+++|++|++++ +.++.+| .+ ..+++|+.|++++ +.++.+ |..+..+++|++|++++|
T Consensus 479 p~--~--~~~l~~L~~L~Ls~--N~l~~lp-~l-------~~l~~L~~L~Ls~-N~l~~~~~p~~l~~l~~L~~L~L~~N 543 (567)
T 1dce_A 479 PP--A--LAALRCLEVLQASD--NALENVD-GV-------ANLPRLQELLLCN-NRLQQSAAIQPLVSCPRLVLLNLQGN 543 (567)
T ss_dssp CG--G--GGGCTTCCEEECCS--SCCCCCG-GG-------TTCSSCCEEECCS-SCCCSSSTTGGGGGCTTCCEEECTTS
T ss_pred ch--h--hhcCCCCCEEECCC--CCCCCCc-cc-------CCCCCCcEEECCC-CCCCCCCCcHHHhcCCCCCEEEecCC
Confidence 32 1 56777888888877 5666666 34 4667888888887 567766 677778888888888887
Q ss_pred CCCcccCCCCC-----CCCccEEEe
Q 018478 311 PKLKYFPEKGL-----PSSLLELWI 330 (355)
Q Consensus 311 ~~l~~~~~~~~-----~~~L~~L~l 330 (355)
.++.++.... +++|+.|++
T Consensus 544 -~l~~~~~~~~~l~~~lp~L~~L~l 567 (567)
T 1dce_A 544 -SLCQEEGIQERLAEMLPSVSSILT 567 (567)
T ss_dssp -GGGGSSSCTTHHHHHCTTCSEEEC
T ss_pred -cCCCCccHHHHHHHHCcccCccCC
Confidence 5777655321 577777753
No 120
>2xot_A Amphoterin-induced protein 1; cell adhesion, neuronal protein, neurite growth regulation; HET: NAG BMA; 2.00A {Mus musculus}
Probab=99.23 E-value=6.4e-11 Score=107.60 Aligned_cols=163 Identities=15% Similarity=0.136 Sum_probs=116.4
Q ss_pred ceEecccCccccccccccCcCCCCCCCccccccccccEEEecCCCccchhccccccchhccccccC--C-CCCcccEEEE
Q 018478 32 KRLDIQCCSNIRTLTMEEGIQSSSSSSSRRYTSYLLEELCISSCRSLTSIFSKNELSATLESLEVG--N-LPPSLKSLRV 108 (355)
Q Consensus 32 ~~L~l~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~~~~~n~~~~~~~~~~~~--~-~~~~L~~L~l 108 (355)
+.+++++ +.++.+|... ...++.|+++++ .++.+ +.. . .+++|+.|++
T Consensus 21 ~~l~c~~-~~l~~iP~~~--------------~~~l~~L~Ls~N-~l~~l-------------~~~~~~~~l~~L~~L~L 71 (361)
T 2xot_A 21 NILSCSK-QQLPNVPQSL--------------PSYTALLDLSHN-NLSRL-------------RAEWTPTRLTNLHSLLL 71 (361)
T ss_dssp TEEECCS-SCCSSCCSSC--------------CTTCSEEECCSS-CCCEE-------------CTTSSSSCCTTCCEEEC
T ss_pred CEEEeCC-CCcCccCccC--------------CCCCCEEECCCC-CCCcc-------------ChhhhhhcccccCEEEC
Confidence 5677777 5678888765 567888999875 45555 333 2 4578999999
Q ss_pred ccCcchhchh-hhccCCCCCcEEEeeccCCcCccc-ccccCCCCCceEeccccCCCcCC-CCCCCCCCCcceEEEccccC
Q 018478 109 QGCSKLESIA-ETLDNSTSLETIHIFYCENMKILP-SGLHNLRQLQEISIEGCGNLESF-PEGGLPCAKLKEVVIRWCGR 185 (355)
Q Consensus 109 ~~~~~~~~~~-~~~~~l~~L~~L~l~~~~~~~~~~-~~~~~l~~L~~L~l~~~~~l~~~-~~~~~~~~~L~~L~l~~~~~ 185 (355)
++|. +..++ ..+..+++|++|++++|. +..++ ..+..+++|+.|++++| .+..+ +..+..+++|+.|++++| .
T Consensus 72 ~~N~-i~~i~~~~~~~l~~L~~L~Ls~N~-l~~~~~~~~~~l~~L~~L~L~~N-~i~~~~~~~~~~l~~L~~L~L~~N-~ 147 (361)
T 2xot_A 72 SHNH-LNFISSEAFVPVPNLRYLDLSSNH-LHTLDEFLFSDLQALEVLLLYNN-HIVVVDRNAFEDMAQLQKLYLSQN-Q 147 (361)
T ss_dssp CSSC-CCEECTTTTTTCTTCCEEECCSSC-CCEECTTTTTTCTTCCEEECCSS-CCCEECTTTTTTCTTCCEEECCSS-C
T ss_pred CCCc-CCccChhhccCCCCCCEEECCCCc-CCcCCHHHhCCCcCCCEEECCCC-cccEECHHHhCCcccCCEEECCCC-c
Confidence 9887 66665 457889999999999987 55554 46788899999999987 45544 567777899999999985 4
Q ss_pred cCcccccc----cCCCCCceEEEeecCcCCCC-----CCCC--ccEEEecCCc
Q 018478 186 LEALPKGL----HNLKSLQKLTIGKGGLEEDG-----LPTN--LHSLDIRGNM 227 (355)
Q Consensus 186 ~~~~p~~l----~~~~~L~~L~l~~~~i~~~~-----~~~~--L~~L~l~~~~ 227 (355)
++.+|..+ ..+++|+.|+++.+.+.... .++. ++.|++.+|.
T Consensus 148 l~~l~~~~~~~~~~l~~L~~L~L~~N~l~~l~~~~~~~l~~~~l~~l~l~~N~ 200 (361)
T 2xot_A 148 ISRFPVELIKDGNKLPKLMLLDLSSNKLKKLPLTDLQKLPAWVKNGLYLHNNP 200 (361)
T ss_dssp CCSCCGGGTC----CTTCCEEECCSSCCCCCCHHHHHHSCHHHHTTEECCSSC
T ss_pred CCeeCHHHhcCcccCCcCCEEECCCCCCCccCHHHhhhccHhhcceEEecCCC
Confidence 66666543 56888888888855555432 2233 4678888775
No 121
>4fdw_A Leucine rich hypothetical protein; putative cell surface protein, BIG3 domain, LRR domain, STRU genomics; 2.05A {Bacteroides ovatus} PDB: 4fd0_A
Probab=99.23 E-value=2.6e-09 Score=98.12 Aligned_cols=252 Identities=11% Similarity=0.140 Sum_probs=153.0
Q ss_pred CCcceEecccCccccccccccCcCCCCCCCccccccccccEEEecCCCccchhccccccchhccccccCCCC-CcccEEE
Q 018478 29 RSLKRLDIQCCSNIRTLTMEEGIQSSSSSSSRRYTSYLLEELCISSCRSLTSIFSKNELSATLESLEVGNLP-PSLKSLR 107 (355)
Q Consensus 29 ~~L~~L~l~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~~~~~n~~~~~~~~~~~~~~~-~~L~~L~ 107 (355)
..++.+.+.+ .++.++... |.++ +|+.+.+.. +++.+ ....+. .+|+.+.
T Consensus 113 ~~l~~i~ip~--~i~~I~~~a-----------F~~~-~L~~i~l~~--~i~~I-------------~~~aF~~~~L~~i~ 163 (401)
T 4fdw_A 113 KGYNEIILPN--SVKSIPKDA-----------FRNS-QIAKVVLNE--GLKSI-------------GDMAFFNSTVQEIV 163 (401)
T ss_dssp SSCSEEECCT--TCCEECTTT-----------TTTC-CCSEEECCT--TCCEE-------------CTTTTTTCCCCEEE
T ss_pred CCccEEEECC--ccCEehHhh-----------cccC-CccEEEeCC--CccEE-------------CHHhcCCCCceEEE
Confidence 4555565553 355555443 4443 577777653 24444 222110 2567777
Q ss_pred EccCcchhchh-hhccCCCCCcEEEeeccCCcCcccccccCCCCCceEeccccCCCcCCC-CCCCCCCCcceEEEccccC
Q 018478 108 VQGCSKLESIA-ETLDNSTSLETIHIFYCENMKILPSGLHNLRQLQEISIEGCGNLESFP-EGGLPCAKLKEVVIRWCGR 185 (355)
Q Consensus 108 l~~~~~~~~~~-~~~~~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~l~~~~-~~~~~~~~L~~L~l~~~~~ 185 (355)
+.. .+..+. ..|..|++|+.+.+..+. +..++.......+|+.+.+.. .++.++ ..|..|++|+.+.+..+
T Consensus 164 lp~--~l~~I~~~aF~~c~~L~~l~l~~n~-l~~I~~~aF~~~~L~~l~lp~--~l~~I~~~aF~~~~~L~~l~l~~~-- 236 (401)
T 4fdw_A 164 FPS--TLEQLKEDIFYYCYNLKKADLSKTK-ITKLPASTFVYAGIEEVLLPV--TLKEIGSQAFLKTSQLKTIEIPEN-- 236 (401)
T ss_dssp CCT--TCCEECSSTTTTCTTCCEEECTTSC-CSEECTTTTTTCCCSEEECCT--TCCEECTTTTTTCTTCCCEECCTT--
T ss_pred eCC--CccEehHHHhhCcccCCeeecCCCc-ceEechhhEeecccCEEEeCC--chheehhhHhhCCCCCCEEecCCC--
Confidence 664 244443 345667777777776654 555654444456777777764 355554 34555677777777652
Q ss_pred cCcccc-cccCCCCCceEEEe--ecCcCC--CCCCCCccEEEecCCcch----hhhhhhhcccCCCCCccceeEecccCC
Q 018478 186 LEALPK-GLHNLKSLQKLTIG--KGGLEE--DGLPTNLHSLDIRGNMEI----WKSMIEWGQGFHRFSSLRELRIEGCDD 256 (355)
Q Consensus 186 ~~~~p~-~l~~~~~L~~L~l~--~~~i~~--~~~~~~L~~L~l~~~~~~----~~~~~~~~~~~~~l~~L~~L~l~~~~~ 256 (355)
++.++. +|.. .+|+.+.+. ...+.. ...+++|+.+++.++... ..+.. .. |.++++|+.+.+..
T Consensus 237 l~~I~~~aF~~-~~L~~i~lp~~i~~I~~~aF~~c~~L~~l~l~~~~~~~~~~~~I~~-~a--F~~c~~L~~l~l~~--- 309 (401)
T 4fdw_A 237 VSTIGQEAFRE-SGITTVKLPNGVTNIASRAFYYCPELAEVTTYGSTFNDDPEAMIHP-YC--LEGCPKLARFEIPE--- 309 (401)
T ss_dssp CCEECTTTTTT-CCCSEEEEETTCCEECTTTTTTCTTCCEEEEESSCCCCCTTCEECT-TT--TTTCTTCCEECCCT---
T ss_pred ccCcccccccc-CCccEEEeCCCccEEChhHhhCCCCCCEEEeCCccccCCcccEECH-HH--hhCCccCCeEEeCC---
Confidence 444443 4444 567777775 333333 234567777777665321 11221 12 88999999999985
Q ss_pred cccccCccccccCCCCCCCCccceEEeccCCCcccccc-cCCCCCCccEEeeCCCCCCcccCCCCC---CCCccEEEecC
Q 018478 257 DMVSFPPEDIRMGTTLPLPTSLTSLAIFSFPNLERLSS-SIVDLQNLTSLYLVGCPKLKYFPEKGL---PSSLLELWIGG 332 (355)
Q Consensus 257 ~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~l~~-~~~~~~~L~~L~l~~~~~l~~~~~~~~---~~~L~~L~l~~ 332 (355)
.++.++...+ ...++|+.+.+.+ +++.+.. .|.++ +|+.+.+.++ .+..++...+ +..+..|.+..
T Consensus 310 ~i~~I~~~aF------~~c~~L~~l~lp~--~l~~I~~~aF~~~-~L~~l~l~~n-~~~~l~~~~F~~~~~~l~~l~vp~ 379 (401)
T 4fdw_A 310 SIRILGQGLL------GGNRKVTQLTIPA--NVTQINFSAFNNT-GIKEVKVEGT-TPPQVFEKVWYGFPDDITVIRVPA 379 (401)
T ss_dssp TCCEECTTTT------TTCCSCCEEEECT--TCCEECTTSSSSS-CCCEEEECCS-SCCBCCCSSCCCSCTTCCEEEECG
T ss_pred ceEEEhhhhh------cCCCCccEEEECc--cccEEcHHhCCCC-CCCEEEEcCC-CCcccccccccCCCCCccEEEeCH
Confidence 4677776554 5668899999964 5776654 56788 9999999987 6777776544 46888998875
Q ss_pred C
Q 018478 333 C 333 (355)
Q Consensus 333 c 333 (355)
-
T Consensus 380 ~ 380 (401)
T 4fdw_A 380 E 380 (401)
T ss_dssp G
T ss_pred H
Confidence 3
No 122
>2ell_A Acidic leucine-rich nuclear phosphoprotein 32 FAM B; phapi2 protein, silver-stainable protein SSP29, acidic prote in leucines, structural genomics; NMR {Homo sapiens} PDB: 2rr6_A 2jqd_A
Probab=99.18 E-value=8.6e-11 Score=94.54 Aligned_cols=81 Identities=14% Similarity=0.210 Sum_probs=43.7
Q ss_pred CCCcccEEEEccCcchh--chhhhccCCCCCcEEEeeccCCcCcccccccCCCCCceEeccccCCCcC-CCCCCCCCCCc
Q 018478 99 LPPSLKSLRVQGCSKLE--SIAETLDNSTSLETIHIFYCENMKILPSGLHNLRQLQEISIEGCGNLES-FPEGGLPCAKL 175 (355)
Q Consensus 99 ~~~~L~~L~l~~~~~~~--~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~l~~-~~~~~~~~~~L 175 (355)
.+++|+.|++++|. +. .+|..+..+++|++|++++|. +..+ ..+..+++|+.|++++| .+.. +|..+..+++|
T Consensus 22 ~~~~L~~L~l~~n~-l~~~~i~~~~~~l~~L~~L~l~~n~-l~~~-~~~~~l~~L~~L~Ls~N-~l~~~~~~~~~~l~~L 97 (168)
T 2ell_A 22 TPAAVRELVLDNCK-SNDGKIEGLTAEFVNLEFLSLINVG-LISV-SNLPKLPKLKKLELSEN-RIFGGLDMLAEKLPNL 97 (168)
T ss_dssp CTTSCSEEECCSCB-CBTTBCSSCCGGGGGCCEEEEESSC-CCCC-SSCCCCSSCCEEEEESC-CCCSCCCHHHHHCTTC
T ss_pred CcccCCEEECCCCC-CChhhHHHHHHhCCCCCEEeCcCCC-CCCh-hhhccCCCCCEEECcCC-cCchHHHHHHhhCCCC
Confidence 34566666666665 43 455555556666666666655 4444 44555566666666655 2333 33333335555
Q ss_pred ceEEEccc
Q 018478 176 KEVVIRWC 183 (355)
Q Consensus 176 ~~L~l~~~ 183 (355)
+.|++++|
T Consensus 98 ~~L~Ls~N 105 (168)
T 2ell_A 98 THLNLSGN 105 (168)
T ss_dssp CEEECBSS
T ss_pred CEEeccCC
Confidence 55555554
No 123
>2je0_A Acidic leucine-rich nuclear phosphoprotein 32 FAM member A; nuclear protein; 2.40A {Homo sapiens} PDB: 2je1_A
Probab=99.16 E-value=2.6e-11 Score=95.58 Aligned_cols=57 Identities=18% Similarity=0.321 Sum_probs=24.6
Q ss_pred CcccEEEEccCcchhc-hhhhccCCCCCcEEEeeccCCcCccc--ccccCCCCCceEecccc
Q 018478 101 PSLKSLRVQGCSKLES-IAETLDNSTSLETIHIFYCENMKILP--SGLHNLRQLQEISIEGC 159 (355)
Q Consensus 101 ~~L~~L~l~~~~~~~~-~~~~~~~l~~L~~L~l~~~~~~~~~~--~~~~~l~~L~~L~l~~~ 159 (355)
++|+.|++++|. +.. +|..+..+++|++|++++|. ++.++ ..+..+++|+.|++++|
T Consensus 64 ~~L~~L~Ls~n~-i~~~~~~~~~~l~~L~~L~ls~N~-i~~~~~~~~~~~l~~L~~L~l~~N 123 (149)
T 2je0_A 64 NKLKKLELSDNR-VSGGLEVLAEKCPNLTHLNLSGNK-IKDLSTIEPLKKLENLKSLDLFNC 123 (149)
T ss_dssp TTCCEEECCSSC-CCSCTHHHHHHCTTCCEEECTTSC-CCSHHHHGGGGGCTTCCEEECTTC
T ss_pred CCCCEEECCCCc-ccchHHHHhhhCCCCCEEECCCCc-CCChHHHHHHhhCCCCCEEeCcCC
Confidence 444555554444 322 44433344444444444444 33222 33444444444444443
No 124
>4b8c_D Glucose-repressible alcohol dehydrogenase transcr effector; hydrolase-cell cycle complex; 3.41A {Saccharomyces cerevisiae S288C}
Probab=99.16 E-value=3.4e-11 Score=119.13 Aligned_cols=81 Identities=17% Similarity=0.139 Sum_probs=39.4
Q ss_pred CcccEEEEccCcchhchhhhccCCCCCcEEEeeccCCcCcccccccCCCCCceEeccccCCCcCCCCCCCCCCCcceEEE
Q 018478 101 PSLKSLRVQGCSKLESIAETLDNSTSLETIHIFYCENMKILPSGLHNLRQLQEISIEGCGNLESFPEGGLPCAKLKEVVI 180 (355)
Q Consensus 101 ~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~l~~~~~~~~~~~~L~~L~l 180 (355)
++|+.|+|++|. +..+|..++.+++|++|++++|. +..+|..++.+++|+.|++++| .++.+|..+..+++|+.|++
T Consensus 247 ~~L~~L~Ls~N~-l~~lp~~~~~l~~L~~L~Ls~N~-l~~lp~~~~~l~~L~~L~L~~N-~l~~lp~~~~~l~~L~~L~L 323 (727)
T 4b8c_D 247 DFLTRLYLNGNS-LTELPAEIKNLSNLRVLDLSHNR-LTSLPAELGSCFQLKYFYFFDN-MVTTLPWEFGNLCNLQFLGV 323 (727)
T ss_dssp CSCSCCBCTTSC-CSCCCGGGGGGTTCCEEECTTSC-CSSCCSSGGGGTTCSEEECCSS-CCCCCCSSTTSCTTCCCEEC
T ss_pred CCCCEEEeeCCc-CcccChhhhCCCCCCEEeCcCCc-CCccChhhcCCCCCCEEECCCC-CCCccChhhhcCCCccEEeC
Confidence 445555555544 33444444445555555555544 3344444455555555555544 34444444444555555555
Q ss_pred cccc
Q 018478 181 RWCG 184 (355)
Q Consensus 181 ~~~~ 184 (355)
++|.
T Consensus 324 ~~N~ 327 (727)
T 4b8c_D 324 EGNP 327 (727)
T ss_dssp TTSC
T ss_pred CCCc
Confidence 5543
No 125
>2je0_A Acidic leucine-rich nuclear phosphoprotein 32 FAM member A; nuclear protein; 2.40A {Homo sapiens} PDB: 2je1_A
Probab=99.14 E-value=3.1e-11 Score=95.11 Aligned_cols=123 Identities=18% Similarity=0.147 Sum_probs=84.5
Q ss_pred cccccEEEecCCCccc--hhccccccchhccccccC-CCCCcccEEEEccCcchhchhhhccCCCCCcEEEeeccCCcCc
Q 018478 64 SYLLEELCISSCRSLT--SIFSKNELSATLESLEVG-NLPPSLKSLRVQGCSKLESIAETLDNSTSLETIHIFYCENMKI 140 (355)
Q Consensus 64 ~~~L~~L~l~~~~~l~--~~~~~n~~~~~~~~~~~~-~~~~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~ 140 (355)
.++|+.|+++++. ++ .+ +.. ..+++|+.|++++|. +..+ ..++.+++|++|++++|.....
T Consensus 16 ~~~l~~L~l~~n~-l~~~~~-------------~~~~~~l~~L~~L~l~~n~-l~~~-~~~~~l~~L~~L~Ls~n~i~~~ 79 (149)
T 2je0_A 16 PSDVKELVLDNSR-SNEGKL-------------EGLTDEFEELEFLSTINVG-LTSI-ANLPKLNKLKKLELSDNRVSGG 79 (149)
T ss_dssp GGGCSEEECTTCB-CBTTBC-------------CSCCTTCTTCCEEECTTSC-CCCC-TTCCCCTTCCEEECCSSCCCSC
T ss_pred CccCeEEEccCCc-CChhHH-------------HHHHhhcCCCcEEECcCCC-CCCc-hhhhcCCCCCEEECCCCcccch
Confidence 5677888887763 33 33 322 445788888888876 6655 5677788888888888774333
Q ss_pred ccccccCCCCCceEeccccCCCcCCC--CCCCCCCCcceEEEccccCcCcccc----cccCCCCCceEEE
Q 018478 141 LPSGLHNLRQLQEISIEGCGNLESFP--EGGLPCAKLKEVVIRWCGRLEALPK----GLHNLKSLQKLTI 204 (355)
Q Consensus 141 ~~~~~~~l~~L~~L~l~~~~~l~~~~--~~~~~~~~L~~L~l~~~~~~~~~p~----~l~~~~~L~~L~l 204 (355)
+|..+..+++|+.|++++| .++.++ ..+..+++|+.|++++|. ++..+. .+..+++|+.|++
T Consensus 80 ~~~~~~~l~~L~~L~ls~N-~i~~~~~~~~~~~l~~L~~L~l~~N~-l~~~~~~~~~~~~~l~~L~~L~l 147 (149)
T 2je0_A 80 LEVLAEKCPNLTHLNLSGN-KIKDLSTIEPLKKLENLKSLDLFNCE-VTNLNDYRENVFKLLPQLTYLDG 147 (149)
T ss_dssp THHHHHHCTTCCEEECTTS-CCCSHHHHGGGGGCTTCCEEECTTCG-GGGSTTHHHHHHHHCTTCCEETT
T ss_pred HHHHhhhCCCCCEEECCCC-cCCChHHHHHHhhCCCCCEEeCcCCc-ccchHHHHHHHHHHCCCcccccC
Confidence 6666667888888888887 455543 566677888888888864 444443 5677777777754
No 126
>1a9n_A U2A', U2A'; complex (nuclear protein/RNA), RNA, snRNP, ribonucleoprotein, RNA binding protein/RNA complex; 2.38A {Homo sapiens} SCOP: c.10.2.4
Probab=99.12 E-value=3.6e-11 Score=97.59 Aligned_cols=97 Identities=11% Similarity=0.137 Sum_probs=54.1
Q ss_pred CcccEEEEccCcchhchhhhccCCCCCcEEEeeccCCcCcccccc-cCCCCCceEeccccCCCcCCCC--CCCCCCCcce
Q 018478 101 PSLKSLRVQGCSKLESIAETLDNSTSLETIHIFYCENMKILPSGL-HNLRQLQEISIEGCGNLESFPE--GGLPCAKLKE 177 (355)
Q Consensus 101 ~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~-~~l~~L~~L~l~~~~~l~~~~~--~~~~~~~L~~ 177 (355)
++|+.|++++|. +..+ +.+..+++|++|++++|. +..+|..+ ..+++|+.|++++| .++.+|. .+..+++|+.
T Consensus 42 ~~L~~L~Ls~N~-l~~~-~~l~~l~~L~~L~Ls~N~-l~~~~~~~~~~l~~L~~L~L~~N-~i~~~~~~~~l~~l~~L~~ 117 (176)
T 1a9n_A 42 DQFDAIDFSDNE-IRKL-DGFPLLRRLKTLLVNNNR-ICRIGEGLDQALPDLTELILTNN-SLVELGDLDPLASLKSLTY 117 (176)
T ss_dssp TCCSEEECCSSC-CCEE-CCCCCCSSCCEEECCSSC-CCEECSCHHHHCTTCCEEECCSC-CCCCGGGGGGGGGCTTCCE
T ss_pred CCCCEEECCCCC-CCcc-cccccCCCCCEEECCCCc-ccccCcchhhcCCCCCEEECCCC-cCCcchhhHhhhcCCCCCE
Confidence 466666666665 5444 455666666666666665 44444333 56666666666665 4455554 4555666666
Q ss_pred EEEccccCcCccccc----ccCCCCCceE
Q 018478 178 VVIRWCGRLEALPKG----LHNLKSLQKL 202 (355)
Q Consensus 178 L~l~~~~~~~~~p~~----l~~~~~L~~L 202 (355)
|++++|. +..+|.. +..+++|+.|
T Consensus 118 L~l~~N~-i~~~~~~~~~~~~~l~~L~~L 145 (176)
T 1a9n_A 118 LCILRNP-VTNKKHYRLYVIYKVPQVRVL 145 (176)
T ss_dssp EECCSSG-GGGSTTHHHHHHHHCTTCSEE
T ss_pred EEecCCC-CCCcHhHHHHHHHHCCcccee
Confidence 6666643 3333432 4444444443
No 127
>1w8a_A SLIT protein; signaling protein, secreted protein, AXON guidance, leucine-rich repeat glycoprotein, EGF-like domain, signal protein; 2.8A {Drosophila melanogaster} SCOP: c.10.2.7
Probab=99.08 E-value=4.4e-10 Score=92.55 Aligned_cols=104 Identities=16% Similarity=0.200 Sum_probs=68.2
Q ss_pred CCcccEEEEccCcchhchhh--hccCCCCCcEEEeeccCCcCcccccccCCCCCceEeccccCCCcCCC-CCCCCCCCcc
Q 018478 100 PPSLKSLRVQGCSKLESIAE--TLDNSTSLETIHIFYCENMKILPSGLHNLRQLQEISIEGCGNLESFP-EGGLPCAKLK 176 (355)
Q Consensus 100 ~~~L~~L~l~~~~~~~~~~~--~~~~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~l~~~~-~~~~~~~~L~ 176 (355)
+.+++.|++++|. +..+++ .+..+++|++|++++|......|..+..+++|+.|++++| .++.++ ..+..+++|+
T Consensus 28 ~~~l~~L~l~~n~-i~~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N-~l~~~~~~~~~~l~~L~ 105 (192)
T 1w8a_A 28 PLHTTELLLNDNE-LGRISSDGLFGRLPHLVKLELKRNQLTGIEPNAFEGASHIQELQLGEN-KIKEISNKMFLGLHQLK 105 (192)
T ss_dssp CTTCSEEECCSCC-CCSBCCSCSGGGCTTCCEEECCSSCCCCBCTTTTTTCTTCCEEECCSC-CCCEECSSSSTTCTTCC
T ss_pred CCCCCEEECCCCc-CCccCCccccccCCCCCEEECCCCCCCCcCHhHcCCcccCCEEECCCC-cCCccCHHHhcCCCCCC
Confidence 3477888888776 665553 2667788888888877733334566777788888888776 444444 3466677788
Q ss_pred eEEEccccCcCcccccccCCCCCceEEEe
Q 018478 177 EVVIRWCGRLEALPKGLHNLKSLQKLTIG 205 (355)
Q Consensus 177 ~L~l~~~~~~~~~p~~l~~~~~L~~L~l~ 205 (355)
.|++++|......|..+..+++|++|+++
T Consensus 106 ~L~L~~N~l~~~~~~~~~~l~~L~~L~L~ 134 (192)
T 1w8a_A 106 TLNLYDNQISCVMPGSFEHLNSLTSLNLA 134 (192)
T ss_dssp EEECCSSCCCEECTTSSTTCTTCCEEECT
T ss_pred EEECCCCcCCeeCHHHhhcCCCCCEEEeC
Confidence 88887765444445566666666665554
No 128
>2wfh_A SLIT homolog 2 protein C-product; developmental protein, neurogenesis, splicing, glycoprotein, leucine-rich repeat, disulfide bond, differentiation; 1.80A {Homo sapiens}
Probab=99.07 E-value=9e-10 Score=90.73 Aligned_cols=103 Identities=19% Similarity=0.333 Sum_probs=72.5
Q ss_pred CCCcccEEEEccCcchhchhhhccCCCCCcEEEeeccCCcCccc-ccccCCCCCceEeccccCCCcCCC-CCCCCCCCcc
Q 018478 99 LPPSLKSLRVQGCSKLESIAETLDNSTSLETIHIFYCENMKILP-SGLHNLRQLQEISIEGCGNLESFP-EGGLPCAKLK 176 (355)
Q Consensus 99 ~~~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~-~~~~~l~~L~~L~l~~~~~l~~~~-~~~~~~~~L~ 176 (355)
.+++|+.|++++|. +..+|..+..+++|++|++++|. ++.++ ..+..+++|+.|++++| .++.++ ..+..+++|+
T Consensus 29 ~~~~l~~L~L~~n~-i~~ip~~~~~l~~L~~L~Ls~N~-i~~i~~~~f~~l~~L~~L~Ls~N-~l~~i~~~~f~~l~~L~ 105 (193)
T 2wfh_A 29 IPRDVTELYLDGNQ-FTLVPKELSNYKHLTLIDLSNNR-ISTLSNQSFSNMTQLLTLILSYN-RLRCIPPRTFDGLKSLR 105 (193)
T ss_dssp CCTTCCEEECCSSC-CCSCCGGGGGCTTCCEEECCSSC-CCCCCTTTTTTCTTCCEEECCSS-CCCBCCTTTTTTCTTCC
T ss_pred CCCCCCEEECCCCc-CchhHHHhhcccCCCEEECCCCc-CCEeCHhHccCCCCCCEEECCCC-ccCEeCHHHhCCCCCCC
Confidence 44678888888877 67777777888888888888877 44443 56777888888888886 455554 4566778888
Q ss_pred eEEEccccCcCcccc-cccCCCCCceEEEe
Q 018478 177 EVVIRWCGRLEALPK-GLHNLKSLQKLTIG 205 (355)
Q Consensus 177 ~L~l~~~~~~~~~p~-~l~~~~~L~~L~l~ 205 (355)
.|++++|. ++.+|. .+..+++|+.|+++
T Consensus 106 ~L~L~~N~-l~~~~~~~~~~l~~L~~L~L~ 134 (193)
T 2wfh_A 106 LLSLHGND-ISVVPEGAFNDLSALSHLAIG 134 (193)
T ss_dssp EEECCSSC-CCBCCTTTTTTCTTCCEEECC
T ss_pred EEECCCCC-CCeeChhhhhcCccccEEEeC
Confidence 88888854 445543 45666666666554
No 129
>1w8a_A SLIT protein; signaling protein, secreted protein, AXON guidance, leucine-rich repeat glycoprotein, EGF-like domain, signal protein; 2.8A {Drosophila melanogaster} SCOP: c.10.2.7
Probab=99.07 E-value=6e-10 Score=91.71 Aligned_cols=123 Identities=13% Similarity=0.134 Sum_probs=85.0
Q ss_pred ceEecccCccccccccccCcCCCCCCCccccccccccEEEecCCCccchhccccccchhcccccc---CCCCCcccEEEE
Q 018478 32 KRLDIQCCSNIRTLTMEEGIQSSSSSSSRRYTSYLLEELCISSCRSLTSIFSKNELSATLESLEV---GNLPPSLKSLRV 108 (355)
Q Consensus 32 ~~L~l~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~~~~~n~~~~~~~~~~~---~~~~~~L~~L~l 108 (355)
+.+++++ +.++.+|... ..++++|+++++ .++.+ +. ...+++|++|++
T Consensus 11 ~~l~~s~-~~l~~ip~~~--------------~~~l~~L~l~~n-~i~~~-------------~~~~~~~~l~~L~~L~L 61 (192)
T 1w8a_A 11 TTVDCTG-RGLKEIPRDI--------------PLHTTELLLNDN-ELGRI-------------SSDGLFGRLPHLVKLEL 61 (192)
T ss_dssp TEEECTT-SCCSSCCSCC--------------CTTCSEEECCSC-CCCSB-------------CCSCSGGGCTTCCEEEC
T ss_pred CEEEcCC-CCcCcCccCC--------------CCCCCEEECCCC-cCCcc-------------CCccccccCCCCCEEEC
Confidence 5667776 4567777654 446777777764 34444 32 234568888888
Q ss_pred ccCcchhch-hhhccCCCCCcEEEeeccCCcCcc-cccccCCCCCceEeccccCCCcCCCCCCCCCCCcceEEEccccC
Q 018478 109 QGCSKLESI-AETLDNSTSLETIHIFYCENMKIL-PSGLHNLRQLQEISIEGCGNLESFPEGGLPCAKLKEVVIRWCGR 185 (355)
Q Consensus 109 ~~~~~~~~~-~~~~~~l~~L~~L~l~~~~~~~~~-~~~~~~l~~L~~L~l~~~~~l~~~~~~~~~~~~L~~L~l~~~~~ 185 (355)
++|. +..+ |..+..+++|++|++++|. +..+ +..+..+++|+.|++++|..-...|..+..+++|+.|++++|..
T Consensus 62 s~N~-l~~~~~~~~~~l~~L~~L~Ls~N~-l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~l 138 (192)
T 1w8a_A 62 KRNQ-LTGIEPNAFEGASHIQELQLGENK-IKEISNKMFLGLHQLKTLNLYDNQISCVMPGSFEHLNSLTSLNLASNPF 138 (192)
T ss_dssp CSSC-CCCBCTTTTTTCTTCCEEECCSCC-CCEECSSSSTTCTTCCEEECCSSCCCEECTTSSTTCTTCCEEECTTCCB
T ss_pred CCCC-CCCcCHhHcCCcccCCEEECCCCc-CCccCHHHhcCCCCCCEEECCCCcCCeeCHHHhhcCCCCCEEEeCCCCc
Confidence 8887 5544 6677888888888888887 4444 44577888899999988743333466777788899999888654
No 130
>1a9n_A U2A', U2A'; complex (nuclear protein/RNA), RNA, snRNP, ribonucleoprotein, RNA binding protein/RNA complex; 2.38A {Homo sapiens} SCOP: c.10.2.4
Probab=99.07 E-value=1.4e-10 Score=94.08 Aligned_cols=102 Identities=23% Similarity=0.259 Sum_probs=74.4
Q ss_pred CCCcccEEEEccCcchhchhhhccCCCCCcEEEeeccCCcCcccccccCCCCCceEeccccCCCcCCCCCC-CCCCCcce
Q 018478 99 LPPSLKSLRVQGCSKLESIAETLDNSTSLETIHIFYCENMKILPSGLHNLRQLQEISIEGCGNLESFPEGG-LPCAKLKE 177 (355)
Q Consensus 99 ~~~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~l~~~~~~~-~~~~~L~~ 177 (355)
.+++|+.|++++|. +..++......++|++|++++|. ++.+ ..+..+++|+.|++++| .++.+|..+ ..+++|+.
T Consensus 17 ~~~~L~~L~l~~n~-l~~i~~~~~~~~~L~~L~Ls~N~-l~~~-~~l~~l~~L~~L~Ls~N-~l~~~~~~~~~~l~~L~~ 92 (176)
T 1a9n_A 17 NAVRDRELDLRGYK-IPVIENLGATLDQFDAIDFSDNE-IRKL-DGFPLLRRLKTLLVNNN-RICRIGEGLDQALPDLTE 92 (176)
T ss_dssp CTTSCEEEECTTSC-CCSCCCGGGGTTCCSEEECCSSC-CCEE-CCCCCCSSCCEEECCSS-CCCEECSCHHHHCTTCCE
T ss_pred CcCCceEEEeeCCC-CchhHHhhhcCCCCCEEECCCCC-CCcc-cccccCCCCCEEECCCC-cccccCcchhhcCCCCCE
Confidence 35688999999886 66665433334499999999887 6655 56788899999999887 567777554 66889999
Q ss_pred EEEccccCcCcccc--cccCCCCCceEEEe
Q 018478 178 VVIRWCGRLEALPK--GLHNLKSLQKLTIG 205 (355)
Q Consensus 178 L~l~~~~~~~~~p~--~l~~~~~L~~L~l~ 205 (355)
|++++| .++.+|. .+..+++|+.|+++
T Consensus 93 L~L~~N-~i~~~~~~~~l~~l~~L~~L~l~ 121 (176)
T 1a9n_A 93 LILTNN-SLVELGDLDPLASLKSLTYLCIL 121 (176)
T ss_dssp EECCSC-CCCCGGGGGGGGGCTTCCEEECC
T ss_pred EECCCC-cCCcchhhHhhhcCCCCCEEEec
Confidence 999886 4566665 56667766666665
No 131
>2wfh_A SLIT homolog 2 protein C-product; developmental protein, neurogenesis, splicing, glycoprotein, leucine-rich repeat, disulfide bond, differentiation; 1.80A {Homo sapiens}
Probab=99.06 E-value=1.1e-09 Score=90.18 Aligned_cols=120 Identities=16% Similarity=0.230 Sum_probs=89.8
Q ss_pred ccEEEEccCcchhchhhhccCCCCCcEEEeeccCCcCcccccccCCCCCceEeccccCCCcCCC-CCCCCCCCcceEEEc
Q 018478 103 LKSLRVQGCSKLESIAETLDNSTSLETIHIFYCENMKILPSGLHNLRQLQEISIEGCGNLESFP-EGGLPCAKLKEVVIR 181 (355)
Q Consensus 103 L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~l~~~~-~~~~~~~~L~~L~l~ 181 (355)
-+.++++++. +..+|..+ .++|++|++++|. ++.+|..+..+++|+.|++++| .++.++ ..+..+++|+.|+++
T Consensus 12 ~~~l~~~~~~-l~~ip~~~--~~~l~~L~L~~n~-i~~ip~~~~~l~~L~~L~Ls~N-~i~~i~~~~f~~l~~L~~L~Ls 86 (193)
T 2wfh_A 12 DTVVRCSNKG-LKVLPKGI--PRDVTELYLDGNQ-FTLVPKELSNYKHLTLIDLSNN-RISTLSNQSFSNMTQLLTLILS 86 (193)
T ss_dssp TTEEECTTSC-CSSCCSCC--CTTCCEEECCSSC-CCSCCGGGGGCTTCCEEECCSS-CCCCCCTTTTTTCTTCCEEECC
T ss_pred CCEEEcCCCC-CCcCCCCC--CCCCCEEECCCCc-CchhHHHhhcccCCCEEECCCC-cCCEeCHhHccCCCCCCEEECC
Confidence 4678888876 77888755 4799999999987 7788888999999999999997 566665 467889999999999
Q ss_pred cccCcCcccccccCCCCCceEEEeecCcC---C--CCCCCCccEEEecCCc
Q 018478 182 WCGRLEALPKGLHNLKSLQKLTIGKGGLE---E--DGLPTNLHSLDIRGNM 227 (355)
Q Consensus 182 ~~~~~~~~p~~l~~~~~L~~L~l~~~~i~---~--~~~~~~L~~L~l~~~~ 227 (355)
+|......+..+..+++|++|+++.+.+. . ...+++|+.|++++|.
T Consensus 87 ~N~l~~i~~~~f~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~ 137 (193)
T 2wfh_A 87 YNRLRCIPPRTFDGLKSLRLLSLHGNDISVVPEGAFNDLSALSHLAIGANP 137 (193)
T ss_dssp SSCCCBCCTTTTTTCTTCCEEECCSSCCCBCCTTTTTTCTTCCEEECCSSC
T ss_pred CCccCEeCHHHhCCCCCCCEEECCCCCCCeeChhhhhcCccccEEEeCCCC
Confidence 96543333457888888888888733333 2 2234566666666654
No 132
>4b8c_D Glucose-repressible alcohol dehydrogenase transcr effector; hydrolase-cell cycle complex; 3.41A {Saccharomyces cerevisiae S288C}
Probab=99.01 E-value=2.1e-10 Score=113.42 Aligned_cols=104 Identities=20% Similarity=0.197 Sum_probs=92.5
Q ss_pred CCCCcccEEEEccCcchhchhhhccCCCCCcEEEeeccCCcCcccccccCCCCCceEeccccCCCcCCCCCCCCCCCcce
Q 018478 98 NLPPSLKSLRVQGCSKLESIAETLDNSTSLETIHIFYCENMKILPSGLHNLRQLQEISIEGCGNLESFPEGGLPCAKLKE 177 (355)
Q Consensus 98 ~~~~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~l~~~~~~~~~~~~L~~ 177 (355)
..+++|+.|++++|. +..+|..+..+++|++|++++|. +..+|..++.+++|+.|++++| .++.+|..+..+++|+.
T Consensus 221 ~~l~~L~~L~Ls~n~-l~~l~~~~~~l~~L~~L~Ls~N~-l~~lp~~~~~l~~L~~L~Ls~N-~l~~lp~~~~~l~~L~~ 297 (727)
T 4b8c_D 221 YDDQLWHALDLSNLQ-IFNISANIFKYDFLTRLYLNGNS-LTELPAEIKNLSNLRVLDLSHN-RLTSLPAELGSCFQLKY 297 (727)
T ss_dssp -CCCCCCEEECTTSC-CSCCCGGGGGCCSCSCCBCTTSC-CSCCCGGGGGGTTCCEEECTTS-CCSSCCSSGGGGTTCSE
T ss_pred ccCCCCcEEECCCCC-CCCCChhhcCCCCCCEEEeeCCc-CcccChhhhCCCCCCEEeCcCC-cCCccChhhcCCCCCCE
Confidence 445789999999988 77888888889999999999987 6689988999999999999998 57789999999999999
Q ss_pred EEEccccCcCcccccccCCCCCceEEEe
Q 018478 178 VVIRWCGRLEALPKGLHNLKSLQKLTIG 205 (355)
Q Consensus 178 L~l~~~~~~~~~p~~l~~~~~L~~L~l~ 205 (355)
|++++| .++.+|..++.+++|++|+++
T Consensus 298 L~L~~N-~l~~lp~~~~~l~~L~~L~L~ 324 (727)
T 4b8c_D 298 FYFFDN-MVTTLPWEFGNLCNLQFLGVE 324 (727)
T ss_dssp EECCSS-CCCCCCSSTTSCTTCCCEECT
T ss_pred EECCCC-CCCccChhhhcCCCccEEeCC
Confidence 999996 567889899999999999998
No 133
>4fdw_A Leucine rich hypothetical protein; putative cell surface protein, BIG3 domain, LRR domain, STRU genomics; 2.05A {Bacteroides ovatus} PDB: 4fd0_A
Probab=98.99 E-value=3.8e-08 Score=90.35 Aligned_cols=251 Identities=9% Similarity=0.092 Sum_probs=175.5
Q ss_pred CCCccEEeecccccCcccccCccC-CCcceEecccCccccccccccCcCCCCCCCccccccccccEEEecCCCccchhcc
Q 018478 5 NSSLEILEIWSCRSLTYLAAVQLP-RSLKRLDIQCCSNIRTLTMEEGIQSSSSSSSRRYTSYLLEELCISSCRSLTSIFS 83 (355)
Q Consensus 5 ~~~L~~L~l~~~~~l~~l~~~~~~-~~L~~L~l~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~~~~ 83 (355)
+..++++.+- +.++.|+...|. .+|+++.+.. .++.++... |.+ .+|+.+.+.. .++.+
T Consensus 112 ~~~l~~i~ip--~~i~~I~~~aF~~~~L~~i~l~~--~i~~I~~~a-----------F~~-~~L~~i~lp~--~l~~I-- 171 (401)
T 4fdw_A 112 LKGYNEIILP--NSVKSIPKDAFRNSQIAKVVLNE--GLKSIGDMA-----------FFN-STVQEIVFPS--TLEQL-- 171 (401)
T ss_dssp CSSCSEEECC--TTCCEECTTTTTTCCCSEEECCT--TCCEECTTT-----------TTT-CCCCEEECCT--TCCEE--
T ss_pred cCCccEEEEC--CccCEehHhhcccCCccEEEeCC--CccEECHHh-----------cCC-CCceEEEeCC--CccEe--
Confidence 3567777775 467888877776 6789998875 377777654 555 3699999874 55555
Q ss_pred ccccchhccccccC--CCCCcccEEEEccCcchhchhhhccCCCCCcEEEeeccCCcCccc-ccccCCCCCceEeccccC
Q 018478 84 KNELSATLESLEVG--NLPPSLKSLRVQGCSKLESIAETLDNSTSLETIHIFYCENMKILP-SGLHNLRQLQEISIEGCG 160 (355)
Q Consensus 84 ~n~~~~~~~~~~~~--~~~~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~-~~~~~l~~L~~L~l~~~~ 160 (355)
... ..+++|+.+++..+. +..++.....+.+|+.+.+..+ +..++ ..|.++++|+.+.+..
T Consensus 172 -----------~~~aF~~c~~L~~l~l~~n~-l~~I~~~aF~~~~L~~l~lp~~--l~~I~~~aF~~~~~L~~l~l~~-- 235 (401)
T 4fdw_A 172 -----------KEDIFYYCYNLKKADLSKTK-ITKLPASTFVYAGIEEVLLPVT--LKEIGSQAFLKTSQLKTIEIPE-- 235 (401)
T ss_dssp -----------CSSTTTTCTTCCEEECTTSC-CSEECTTTTTTCCCSEEECCTT--CCEECTTTTTTCTTCCCEECCT--
T ss_pred -----------hHHHhhCcccCCeeecCCCc-ceEechhhEeecccCEEEeCCc--hheehhhHhhCCCCCCEEecCC--
Confidence 333 345789999998876 7777765555789999998743 55554 5677889999999986
Q ss_pred CCcCCCCCCCCCCCcceEEEccccCcCccc-ccccCCCCCceEEEeecC--------cCC--CCCCCCccEEEecCCcch
Q 018478 161 NLESFPEGGLPCAKLKEVVIRWCGRLEALP-KGLHNLKSLQKLTIGKGG--------LEE--DGLPTNLHSLDIRGNMEI 229 (355)
Q Consensus 161 ~l~~~~~~~~~~~~L~~L~l~~~~~~~~~p-~~l~~~~~L~~L~l~~~~--------i~~--~~~~~~L~~L~l~~~~~~ 229 (355)
+++.++.....-.+|+.+.+.. .++.++ .+|..+++|+.+.+..+. ++. ...+++|+.+++.++ +
T Consensus 236 ~l~~I~~~aF~~~~L~~i~lp~--~i~~I~~~aF~~c~~L~~l~l~~~~~~~~~~~~I~~~aF~~c~~L~~l~l~~~--i 311 (401)
T 4fdw_A 236 NVSTIGQEAFRESGITTVKLPN--GVTNIASRAFYYCPELAEVTTYGSTFNDDPEAMIHPYCLEGCPKLARFEIPES--I 311 (401)
T ss_dssp TCCEECTTTTTTCCCSEEEEET--TCCEECTTTTTTCTTCCEEEEESSCCCCCTTCEECTTTTTTCTTCCEECCCTT--C
T ss_pred CccCccccccccCCccEEEeCC--CccEEChhHhhCCCCCCEEEeCCccccCCcccEECHHHhhCCccCCeEEeCCc--e
Confidence 4666665444447899999964 355554 588899999999997322 443 335679999998753 4
Q ss_pred hhhhhhhcccCCCCCccceeEecccCCcccccCccccccCCCCCCCCccceEEeccCCCcccccc-cCCCCC-CccEEee
Q 018478 230 WKSMIEWGQGFHRFSSLRELRIEGCDDDMVSFPPEDIRMGTTLPLPTSLTSLAIFSFPNLERLSS-SIVDLQ-NLTSLYL 307 (355)
Q Consensus 230 ~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~l~~-~~~~~~-~L~~L~l 307 (355)
+.+... . |.++++|+.+.+.. .++.++...+ ... +|+.+.+.+ +.+..++. .+.+++ ++..|.+
T Consensus 312 ~~I~~~-a--F~~c~~L~~l~lp~---~l~~I~~~aF------~~~-~L~~l~l~~-n~~~~l~~~~F~~~~~~l~~l~v 377 (401)
T 4fdw_A 312 RILGQG-L--LGGNRKVTQLTIPA---NVTQINFSAF------NNT-GIKEVKVEG-TTPPQVFEKVWYGFPDDITVIRV 377 (401)
T ss_dssp CEECTT-T--TTTCCSCCEEEECT---TCCEECTTSS------SSS-CCCEEEECC-SSCCBCCCSSCCCSCTTCCEEEE
T ss_pred EEEhhh-h--hcCCCCccEEEECc---cccEEcHHhC------CCC-CCCEEEEcC-CCCcccccccccCCCCCccEEEe
Confidence 333322 2 88999999999965 3667766553 455 899999998 45555543 345554 6777777
Q ss_pred CC
Q 018478 308 VG 309 (355)
Q Consensus 308 ~~ 309 (355)
..
T Consensus 378 p~ 379 (401)
T 4fdw_A 378 PA 379 (401)
T ss_dssp CG
T ss_pred CH
Confidence 54
No 134
>3sb4_A Hypothetical leucine rich repeat protein; LRR, right-handed beta-alpha superhelix, leucine-rich repeat structural genomics; HET: MSE PG4; 1.99A {Bacteroides thetaiotaomicron}
Probab=98.98 E-value=2e-09 Score=96.37 Aligned_cols=181 Identities=14% Similarity=0.150 Sum_probs=92.4
Q ss_pred CCCCccEEeecccccCcccccCccC--CCcceEecccCccccccccccCcCCCCCCCccccccccccEEEecC-------
Q 018478 4 TNSSLEILEIWSCRSLTYLAAVQLP--RSLKRLDIQCCSNIRTLTMEEGIQSSSSSSSRRYTSYLLEELCISS------- 74 (355)
Q Consensus 4 ~~~~L~~L~l~~~~~l~~l~~~~~~--~~L~~L~l~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~------- 74 (355)
++++|++|.+.+ .++.++...|. ++|++|++.+ +.+..++... |..+.++..+.+..
T Consensus 99 g~~~L~~l~L~~--~i~~I~~~aF~~~~~L~~l~l~~-n~i~~i~~~a-----------F~~~~~l~~l~~~~~~~~~~~ 164 (329)
T 3sb4_A 99 GKQTLEKVILSE--KIKNIEDAAFKGCDNLKICQIRK-KTAPNLLPEA-----------LADSVTAIFIPLGSSDAYRFK 164 (329)
T ss_dssp ECTTCCC-CBCT--TCCEECTTTTTTCTTCCEEEBCC-SSCCEECTTS-----------SCTTTCEEEECTTCTHHHHTS
T ss_pred ccCCCcEEECCc--cccchhHHHhhcCcccceEEcCC-CCccccchhh-----------hcCCCceEEecCcchhhhhcc
Confidence 378889998875 78888877776 7899999987 5566665543 44444444444322
Q ss_pred ----------CCccchh--cc-ccccchhccccccCCCCCcccEEEEccCcchhchhhhccCCCCCcEEEeeccCCcCcc
Q 018478 75 ----------CRSLTSI--FS-KNELSATLESLEVGNLPPSLKSLRVQGCSKLESIAETLDNSTSLETIHIFYCENMKIL 141 (355)
Q Consensus 75 ----------~~~l~~~--~~-~n~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~ 141 (355)
|..++.. +. ...+.+.+. .....+.+++.+.+.+.-....+......+++|+.+++.+|. +..+
T Consensus 165 ~~i~~~~f~~~~~L~~~i~~~~~~~l~~~~~--~~~~~~~~~~~l~~~~~l~~~~~~~l~~~~~~L~~l~L~~n~-i~~I 241 (329)
T 3sb4_A 165 NRWEHFAFIEGEPLETTIQVGAMGKLEDEIM--KAGLQPRDINFLTIEGKLDNADFKLIRDYMPNLVSLDISKTN-ATTI 241 (329)
T ss_dssp TTTTTSCEEESCCCEEEEEECTTCCHHHHHH--HTTCCGGGCSEEEEEECCCHHHHHHHHHHCTTCCEEECTTBC-CCEE
T ss_pred ccccccccccccccceeEEecCCCcHHHHHh--hcccCccccceEEEeeeecHHHHHHHHHhcCCCeEEECCCCC-ccee
Confidence 1111100 00 000000000 000112334444444332111111111225677777776655 5555
Q ss_pred c-ccccCCCCCceEeccccCCCcCCC-CCCCCCCCcc-eEEEccccCcCccc-ccccCCCCCceEEEe
Q 018478 142 P-SGLHNLRQLQEISIEGCGNLESFP-EGGLPCAKLK-EVVIRWCGRLEALP-KGLHNLKSLQKLTIG 205 (355)
Q Consensus 142 ~-~~~~~l~~L~~L~l~~~~~l~~~~-~~~~~~~~L~-~L~l~~~~~~~~~p-~~l~~~~~L~~L~l~ 205 (355)
+ ..|.++++|+.+++.++ ++.++ ..|..|++|+ .+.+.+ .++.++ .+|.+|++|+.+++.
T Consensus 242 ~~~aF~~~~~L~~l~l~~n--i~~I~~~aF~~~~~L~~~l~l~~--~l~~I~~~aF~~c~~L~~l~l~ 305 (329)
T 3sb4_A 242 PDFTFAQKKYLLKIKLPHN--LKTIGQRVFSNCGRLAGTLELPA--SVTAIEFGAFMGCDNLRYVLAT 305 (329)
T ss_dssp CTTTTTTCTTCCEEECCTT--CCEECTTTTTTCTTCCEEEEECT--TCCEECTTTTTTCTTEEEEEEC
T ss_pred cHhhhhCCCCCCEEECCcc--cceehHHHhhCChhccEEEEEcc--cceEEchhhhhCCccCCEEEeC
Confidence 4 34666667777777653 55554 3455566676 776665 344443 466667777777764
No 135
>2o6r_A Variable lymphocyte receptor B; leucine-rich repeat protein, LRR, immune system; 2.30A {Eptatretus burgeri}
Probab=98.92 E-value=9.5e-09 Score=83.19 Aligned_cols=101 Identities=24% Similarity=0.344 Sum_probs=48.8
Q ss_pred CcccEEEEccCcchhchhh-hccCCCCCcEEEeeccCCcCcccc-cccCCCCCceEeccccCCCcCCCC-CCCCCCCcce
Q 018478 101 PSLKSLRVQGCSKLESIAE-TLDNSTSLETIHIFYCENMKILPS-GLHNLRQLQEISIEGCGNLESFPE-GGLPCAKLKE 177 (355)
Q Consensus 101 ~~L~~L~l~~~~~~~~~~~-~~~~l~~L~~L~l~~~~~~~~~~~-~~~~l~~L~~L~l~~~~~l~~~~~-~~~~~~~L~~ 177 (355)
++|+.|++++|. +..++. .+..+++|++|++++|. +..++. .+..+++|+.|++++| .++.+|. .+..+++|+.
T Consensus 28 ~~l~~L~l~~n~-l~~~~~~~~~~l~~L~~L~l~~n~-l~~~~~~~~~~l~~L~~L~l~~N-~l~~~~~~~~~~l~~L~~ 104 (177)
T 2o6r_A 28 SSATRLELESNK-LQSLPHGVFDKLTQLTKLSLSQNQ-IQSLPDGVFDKLTKLTILYLHEN-KLQSLPNGVFDKLTQLKE 104 (177)
T ss_dssp TTCSEEECCSSC-CCCCCTTTTTTCTTCSEEECCSSC-CCCCCTTTTTTCTTCCEEECCSS-CCCCCCTTTTTTCTTCCE
T ss_pred CCCcEEEeCCCc-ccEeCHHHhcCcccccEEECCCCc-ceEeChhHccCCCccCEEECCCC-CccccCHHHhhCCcccCE
Confidence 455555555554 333332 23445555555555554 333332 2345555555555554 3444433 2344555555
Q ss_pred EEEccccCcCcccc-cccCCCCCceEEEe
Q 018478 178 VVIRWCGRLEALPK-GLHNLKSLQKLTIG 205 (355)
Q Consensus 178 L~l~~~~~~~~~p~-~l~~~~~L~~L~l~ 205 (355)
|++++| .++.+|. .+..+++|++|+++
T Consensus 105 L~l~~N-~l~~~~~~~~~~l~~L~~L~l~ 132 (177)
T 2o6r_A 105 LALDTN-QLKSVPDGIFDRLTSLQKIWLH 132 (177)
T ss_dssp EECCSS-CCSCCCTTTTTTCTTCCEEECC
T ss_pred EECcCC-cceEeCHHHhcCCcccCEEEec
Confidence 555554 2333333 23455555555554
No 136
>2o6r_A Variable lymphocyte receptor B; leucine-rich repeat protein, LRR, immune system; 2.30A {Eptatretus burgeri}
Probab=98.92 E-value=1.1e-08 Score=82.72 Aligned_cols=122 Identities=20% Similarity=0.248 Sum_probs=86.5
Q ss_pred cccEEEEccCcchhchhhhccCCCCCcEEEeeccCCcCccc-ccccCCCCCceEeccccCCCcCCCC-CCCCCCCcceEE
Q 018478 102 SLKSLRVQGCSKLESIAETLDNSTSLETIHIFYCENMKILP-SGLHNLRQLQEISIEGCGNLESFPE-GGLPCAKLKEVV 179 (355)
Q Consensus 102 ~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~-~~~~~l~~L~~L~l~~~~~l~~~~~-~~~~~~~L~~L~ 179 (355)
+.+.++++++. +..+|..+ .++|++|++++|. +..++ ..+..+++|+.|++++| .++.++. .+..+++|+.|+
T Consensus 8 ~~~~l~~~~~~-l~~~p~~~--~~~l~~L~l~~n~-l~~~~~~~~~~l~~L~~L~l~~n-~l~~~~~~~~~~l~~L~~L~ 82 (177)
T 2o6r_A 8 SGTEIRCNSKG-LTSVPTGI--PSSATRLELESNK-LQSLPHGVFDKLTQLTKLSLSQN-QIQSLPDGVFDKLTKLTILY 82 (177)
T ss_dssp ETTEEECCSSC-CSSCCTTC--CTTCSEEECCSSC-CCCCCTTTTTTCTTCSEEECCSS-CCCCCCTTTTTTCTTCCEEE
T ss_pred CCCEEEecCCC-CccCCCCC--CCCCcEEEeCCCc-ccEeCHHHhcCcccccEEECCCC-cceEeChhHccCCCccCEEE
Confidence 45677777766 66777544 4788999998877 55554 34677888999999887 5666664 356788899999
Q ss_pred EccccCcCcccc-cccCCCCCceEEEeecC---cCC--CCCCCCccEEEecCCcch
Q 018478 180 IRWCGRLEALPK-GLHNLKSLQKLTIGKGG---LEE--DGLPTNLHSLDIRGNMEI 229 (355)
Q Consensus 180 l~~~~~~~~~p~-~l~~~~~L~~L~l~~~~---i~~--~~~~~~L~~L~l~~~~~~ 229 (355)
+++|. ++.+|. .+..+++|++|+++.+. ++. ...+++|+.|++++|...
T Consensus 83 l~~N~-l~~~~~~~~~~l~~L~~L~l~~N~l~~~~~~~~~~l~~L~~L~l~~N~~~ 137 (177)
T 2o6r_A 83 LHENK-LQSLPNGVFDKLTQLKELALDTNQLKSVPDGIFDRLTSLQKIWLHTNPWD 137 (177)
T ss_dssp CCSSC-CCCCCTTTTTTCTTCCEEECCSSCCSCCCTTTTTTCTTCCEEECCSSCBC
T ss_pred CCCCC-ccccCHHHhhCCcccCEEECcCCcceEeCHHHhcCCcccCEEEecCCCee
Confidence 98864 445543 56788899999888433 333 234678889999888643
No 137
>4fs7_A Uncharacterized protein; leucine-rich repeats, protein binding, extracellular protein structural genomics; HET: MSE; 1.19A {Bacteroides ovatus}
Probab=98.90 E-value=1.9e-07 Score=85.54 Aligned_cols=204 Identities=16% Similarity=0.148 Sum_probs=118.0
Q ss_pred CcccEEEEccCcchhchh-hhccCCCCCcEEEeeccCCcCccc-ccccCCCCCceEeccccCCCcCCCCCCCCCCCcceE
Q 018478 101 PSLKSLRVQGCSKLESIA-ETLDNSTSLETIHIFYCENMKILP-SGLHNLRQLQEISIEGCGNLESFPEGGLPCAKLKEV 178 (355)
Q Consensus 101 ~~L~~L~l~~~~~~~~~~-~~~~~l~~L~~L~l~~~~~~~~~~-~~~~~l~~L~~L~l~~~~~l~~~~~~~~~~~~L~~L 178 (355)
.+|+.+.+..+ +..++ ..|..+.+|+.+.+..+ +..+. ..+.++..|+.+.+... ...+........+|+.+
T Consensus 162 ~~L~~i~l~~~--~~~I~~~~F~~c~~L~~i~l~~~--~~~I~~~~F~~~~~L~~i~~~~~--~~~i~~~~~~~~~l~~i 235 (394)
T 4fs7_A 162 ESLEYVSLPDS--METLHNGLFSGCGKLKSIKLPRN--LKIIRDYCFAECILLENMEFPNS--LYYLGDFALSKTGVKNI 235 (394)
T ss_dssp TTCCEEECCTT--CCEECTTTTTTCTTCCBCCCCTT--CCEECTTTTTTCTTCCBCCCCTT--CCEECTTTTTTCCCCEE
T ss_pred CCCcEEecCCc--cceeccccccCCCCceEEEcCCC--ceEeCchhhccccccceeecCCC--ceEeehhhcccCCCceE
Confidence 45566655432 22222 33445566666655432 23322 23445555655555432 22233334445567777
Q ss_pred EEccccCcCccc-ccccCCCCCceEEEe--ecCcCC--CCCCCCccEEEecCCcchhhhhhhhcccCCCCCccceeEecc
Q 018478 179 VIRWCGRLEALP-KGLHNLKSLQKLTIG--KGGLEE--DGLPTNLHSLDIRGNMEIWKSMIEWGQGFHRFSSLRELRIEG 253 (355)
Q Consensus 179 ~l~~~~~~~~~p-~~l~~~~~L~~L~l~--~~~i~~--~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~l~~L~~L~l~~ 253 (355)
.+... ++.+. .++..+..++.+.+. ...+.. ......++.+...... + + +.. +..+.+|+.+.+..
T Consensus 236 ~ip~~--~~~i~~~~f~~~~~l~~~~~~~~~~~i~~~~F~~~~~l~~~~~~~~~-i---~-~~~--F~~~~~L~~i~l~~ 306 (394)
T 4fs7_A 236 IIPDS--FTELGKSVFYGCTDLESISIQNNKLRIGGSLFYNCSGLKKVIYGSVI-V---P-EKT--FYGCSSLTEVKLLD 306 (394)
T ss_dssp EECTT--CCEECSSTTTTCSSCCEEEECCTTCEECSCTTTTCTTCCEEEECSSE-E---C-TTT--TTTCTTCCEEEECT
T ss_pred EECCC--ceecccccccccccceeEEcCCCcceeeccccccccccceeccCcee-e---c-ccc--cccccccccccccc
Confidence 66542 22232 355677777777775 222222 2234566666554432 1 1 112 67888899988865
Q ss_pred cCCcccccCccccccCCCCCCCCccceEEeccCCCcccccc-cCCCCCCccEEeeCCCCCCcccCCCCC--CCCccEEEe
Q 018478 254 CDDDMVSFPPEDIRMGTTLPLPTSLTSLAIFSFPNLERLSS-SIVDLQNLTSLYLVGCPKLKYFPEKGL--PSSLLELWI 330 (355)
Q Consensus 254 ~~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~l~~-~~~~~~~L~~L~l~~~~~l~~~~~~~~--~~~L~~L~l 330 (355)
.++.+++..+ ....+|+.+++.+ .++.+.. .+.++.+|+.+.+.. .++.++...+ +.+|+.+++
T Consensus 307 ---~i~~I~~~aF------~~c~~L~~i~lp~--~v~~I~~~aF~~c~~L~~i~lp~--~l~~I~~~aF~~C~~L~~i~l 373 (394)
T 4fs7_A 307 ---SVKFIGEEAF------ESCTSLVSIDLPY--LVEEIGKRSFRGCTSLSNINFPL--SLRKIGANAFQGCINLKKVEL 373 (394)
T ss_dssp ---TCCEECTTTT------TTCTTCCEECCCT--TCCEECTTTTTTCTTCCEECCCT--TCCEECTTTBTTCTTCCEEEE
T ss_pred ---ccceechhhh------cCCCCCCEEEeCC--cccEEhHHhccCCCCCCEEEECc--cccEehHHHhhCCCCCCEEEE
Confidence 3666665443 4567899998874 5676653 568899999999975 4888887766 789999998
Q ss_pred cC
Q 018478 331 GG 332 (355)
Q Consensus 331 ~~ 332 (355)
..
T Consensus 374 p~ 375 (394)
T 4fs7_A 374 PK 375 (394)
T ss_dssp EG
T ss_pred CC
Confidence 64
No 138
>1ds9_A Outer arm dynein; leucine-rich repeat, beta-BETA-alpha cylinder, flagella, contractIle protein; NMR {Chlamydomonas reinhardtii} SCOP: c.10.3.1 PDB: 1m9l_A
Probab=98.88 E-value=1.8e-11 Score=101.39 Aligned_cols=105 Identities=17% Similarity=0.203 Sum_probs=62.3
Q ss_pred cccccccEEEecCCCccchhccccccchhccccccCCCCCcccEEEEccCcchhchhhhccCCCCCcEEEeeccCCcCcc
Q 018478 62 YTSYLLEELCISSCRSLTSIFSKNELSATLESLEVGNLPPSLKSLRVQGCSKLESIAETLDNSTSLETIHIFYCENMKIL 141 (355)
Q Consensus 62 ~~~~~L~~L~l~~~~~l~~~~~~n~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~ 141 (355)
..+++|++|+++++ .++.+ +....+++|+.|++++|. +..+|..+..+++|++|++++|. +..+
T Consensus 45 ~~l~~L~~L~ls~n-~l~~l-------------~~~~~l~~L~~L~l~~n~-l~~l~~~~~~~~~L~~L~L~~N~-l~~l 108 (198)
T 1ds9_A 45 STLKACKHLALSTN-NIEKI-------------SSLSGMENLRILSLGRNL-IKKIENLDAVADTLEELWISYNQ-IASL 108 (198)
T ss_dssp HHTTTCSEEECSEE-EESCC-------------CCHHHHTTCCEEEEEEEE-ECSCSSHHHHHHHCSEEEEEEEE-CCCH
T ss_pred hcCCCCCEEECCCC-CCccc-------------cccccCCCCCEEECCCCC-cccccchhhcCCcCCEEECcCCc-CCcC
Confidence 44666777777654 34444 422333567777777765 55666555556677777777765 5555
Q ss_pred cccccCCCCCceEeccccCCCcCCCC--CCCCCCCcceEEEcccc
Q 018478 142 PSGLHNLRQLQEISIEGCGNLESFPE--GGLPCAKLKEVVIRWCG 184 (355)
Q Consensus 142 ~~~~~~l~~L~~L~l~~~~~l~~~~~--~~~~~~~L~~L~l~~~~ 184 (355)
| .+..+++|+.|++++| .+..++. .+..+++|+.|++++|.
T Consensus 109 ~-~~~~l~~L~~L~l~~N-~i~~~~~~~~l~~l~~L~~L~l~~N~ 151 (198)
T 1ds9_A 109 S-GIEKLVNLRVLYMSNN-KITNWGEIDKLAALDKLEDLLLAGNP 151 (198)
T ss_dssp H-HHHHHHHSSEEEESEE-ECCCHHHHHHHTTTTTCSEEEECSCH
T ss_pred C-ccccCCCCCEEECCCC-cCCchhHHHHHhcCCCCCEEEecCCc
Confidence 4 4566667777777665 3444332 34456677777777654
No 139
>1ds9_A Outer arm dynein; leucine-rich repeat, beta-BETA-alpha cylinder, flagella, contractIle protein; NMR {Chlamydomonas reinhardtii} SCOP: c.10.3.1 PDB: 1m9l_A
Probab=98.85 E-value=8.1e-11 Score=97.46 Aligned_cols=122 Identities=16% Similarity=0.267 Sum_probs=83.9
Q ss_pred cccEEEEccC-cchhchhhhccCCCCCcEEEeeccCCcCcccccccCCCCCceEeccccCCCcCCCCCCCCCCCcceEEE
Q 018478 102 SLKSLRVQGC-SKLESIAETLDNSTSLETIHIFYCENMKILPSGLHNLRQLQEISIEGCGNLESFPEGGLPCAKLKEVVI 180 (355)
Q Consensus 102 ~L~~L~l~~~-~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~l~~~~~~~~~~~~L~~L~l 180 (355)
.++...+.+. +.++.+|..+..+++|++|++++|. +..+| .+..+++|+.|++++| .+..+|..+..+++|+.|++
T Consensus 24 ~l~~~~l~~~~~~l~~l~~~~~~l~~L~~L~ls~n~-l~~l~-~~~~l~~L~~L~l~~n-~l~~l~~~~~~~~~L~~L~L 100 (198)
T 1ds9_A 24 EAEKVELHGMIPPIEKMDATLSTLKACKHLALSTNN-IEKIS-SLSGMENLRILSLGRN-LIKKIENLDAVADTLEELWI 100 (198)
T ss_dssp TCSEEECCBCCTTCCCCHHHHHHTTTCSEEECSEEE-ESCCC-CHHHHTTCCEEEEEEE-EECSCSSHHHHHHHCSEEEE
T ss_pred chheeEeccccCcHhhhhHHHhcCCCCCEEECCCCC-Ccccc-ccccCCCCCEEECCCC-CcccccchhhcCCcCCEEEC
Confidence 4566666554 2355666677778888888888876 66676 6777888888888887 56677765555678888888
Q ss_pred ccccCcCcccccccCCCCCceEEEeecCcCC------CCCCCCccEEEecCCcc
Q 018478 181 RWCGRLEALPKGLHNLKSLQKLTIGKGGLEE------DGLPTNLHSLDIRGNME 228 (355)
Q Consensus 181 ~~~~~~~~~p~~l~~~~~L~~L~l~~~~i~~------~~~~~~L~~L~l~~~~~ 228 (355)
++| .++.+| .+..+++|++|+++.+.+.. ...+++|+.|++++|..
T Consensus 101 ~~N-~l~~l~-~~~~l~~L~~L~l~~N~i~~~~~~~~l~~l~~L~~L~l~~N~l 152 (198)
T 1ds9_A 101 SYN-QIASLS-GIEKLVNLRVLYMSNNKITNWGEIDKLAALDKLEDLLLAGNPL 152 (198)
T ss_dssp EEE-ECCCHH-HHHHHHHSSEEEESEEECCCHHHHHHHTTTTTCSEEEECSCHH
T ss_pred cCC-cCCcCC-ccccCCCCCEEECCCCcCCchhHHHHHhcCCCCCEEEecCCcc
Confidence 886 455565 57777788888777433332 23456677777777653
No 140
>3g39_A Variable lymphocyte receptor VLRB.2D; antibody, X-RAY, crystallography, immune system; 1.55A {Petromyzon marinus} PDB: 3g3a_A 3g3b_A 3twi_D
Probab=98.74 E-value=3.9e-08 Score=79.05 Aligned_cols=96 Identities=22% Similarity=0.387 Sum_probs=44.5
Q ss_pred ccEEEEccCcchhchhhhccCCCCCcEEEeeccCCcCcc-cccccCCCCCceEeccccCCCcCCCCC-CCCCCCcceEEE
Q 018478 103 LKSLRVQGCSKLESIAETLDNSTSLETIHIFYCENMKIL-PSGLHNLRQLQEISIEGCGNLESFPEG-GLPCAKLKEVVI 180 (355)
Q Consensus 103 L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~-~~~~~~l~~L~~L~l~~~~~l~~~~~~-~~~~~~L~~L~l 180 (355)
.+.++++++. ++.+|..+ .++|++|++++|. +..+ +..+..+++|+.|++++| .++.+|.. +..+++|+.|++
T Consensus 11 ~~~l~~s~n~-l~~ip~~~--~~~l~~L~L~~N~-i~~~~~~~~~~l~~L~~L~Ls~N-~l~~l~~~~f~~l~~L~~L~L 85 (170)
T 3g39_A 11 GTTVDCSGKS-LASVPTGI--PTTTQVLYLYDNQ-ITKLEPGVFDRLTQLTRLDLDNN-QLTVLPAGVFDKLTQLTQLSL 85 (170)
T ss_dssp TTEEECTTSC-CSSCCSCC--CTTCSEEECCSSC-CCCCCTTTTTTCTTCSEEECCSS-CCCCCCTTTTTTCTTCCEEEC
T ss_pred CCEEEeCCCC-cCccCccC--CCCCcEEEcCCCc-CCccChhhhcCcccCCEEECCCC-CcCccChhhccCCCCCCEEEC
Confidence 3455555544 44444433 2455555555554 3332 344555555555555554 34444432 344555555555
Q ss_pred ccccCcCcccc-cccCCCCCceEEE
Q 018478 181 RWCGRLEALPK-GLHNLKSLQKLTI 204 (355)
Q Consensus 181 ~~~~~~~~~p~-~l~~~~~L~~L~l 204 (355)
++|. ++.+|. .+..+++|++|++
T Consensus 86 ~~N~-l~~~~~~~~~~l~~L~~L~L 109 (170)
T 3g39_A 86 NDNQ-LKSIPRGAFDNLKSLTHIWL 109 (170)
T ss_dssp CSSC-CCCCCTTTTTTCTTCCEEEC
T ss_pred CCCc-cCEeCHHHhcCCCCCCEEEe
Confidence 5532 333332 3444444444444
No 141
>2r9u_A Variable lymphocyte receptor; adaptive immunity, VLR, leucine-rich repeat, LRR, system; 2.10A {Petromyzon marinus}
Probab=98.73 E-value=4.1e-08 Score=79.24 Aligned_cols=79 Identities=16% Similarity=0.316 Sum_probs=34.0
Q ss_pred CcccEEEEccCcchhch-hhhccCCCCCcEEEeeccCCcCccccc-ccCCCCCceEeccccCCCcCCCCC-CCCCCCcce
Q 018478 101 PSLKSLRVQGCSKLESI-AETLDNSTSLETIHIFYCENMKILPSG-LHNLRQLQEISIEGCGNLESFPEG-GLPCAKLKE 177 (355)
Q Consensus 101 ~~L~~L~l~~~~~~~~~-~~~~~~l~~L~~L~l~~~~~~~~~~~~-~~~l~~L~~L~l~~~~~l~~~~~~-~~~~~~L~~ 177 (355)
++|+.|++++|. +..+ |..+..+++|++|++++|. +..+|.. +..+++|+.|++++| .++.+|.. +..+++|+.
T Consensus 33 ~~L~~L~Ls~N~-l~~~~~~~~~~l~~L~~L~Ls~N~-l~~i~~~~~~~l~~L~~L~L~~N-~l~~l~~~~~~~l~~L~~ 109 (174)
T 2r9u_A 33 TDKQRLWLNNNQ-ITKLEPGVFDHLVNLQQLYFNSNK-LTAIPTGVFDKLTQLTQLDLNDN-HLKSIPRGAFDNLKSLTH 109 (174)
T ss_dssp TTCSEEECCSSC-CCCCCTTTTTTCTTCCEEECCSSC-CCCCCTTTTTTCTTCCEEECCSS-CCCCCCTTTTTTCTTCSE
T ss_pred CCCcEEEeCCCC-ccccCHHHhcCCcCCCEEECCCCC-CCccChhHhCCcchhhEEECCCC-ccceeCHHHhccccCCCE
Confidence 444555555444 3332 3334444445555544443 3333322 234444444444443 33333332 333444444
Q ss_pred EEEcc
Q 018478 178 VVIRW 182 (355)
Q Consensus 178 L~l~~ 182 (355)
|++++
T Consensus 110 L~L~~ 114 (174)
T 2r9u_A 110 IYLYN 114 (174)
T ss_dssp EECCS
T ss_pred EEeCC
Confidence 44444
No 142
>4gt6_A Cell surface protein; leucine rich repeats, putative protein binding, extracellula protein, structural genomics; HET: MSE; 1.80A {Faecalibacterium prausnitzii a2-165}
Probab=98.66 E-value=3.2e-06 Score=77.40 Aligned_cols=102 Identities=14% Similarity=0.213 Sum_probs=66.0
Q ss_pred CCCccEEEecCCcchhhhhhhhcccCCCCCccceeEecccCCcccccCccccccCCCCCCCCccceEEeccCCCcccccc
Q 018478 215 PTNLHSLDIRGNMEIWKSMIEWGQGFHRFSSLRELRIEGCDDDMVSFPPEDIRMGTTLPLPTSLTSLAIFSFPNLERLSS 294 (355)
Q Consensus 215 ~~~L~~L~l~~~~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~l~~ 294 (355)
+.+|+.+.+.+.. ..+. ... +.++++|+.+.+.. .+..++...+ ....+|+.+.+.+ +++.+..
T Consensus 264 c~~L~~i~lp~~~--~~I~-~~a--F~~c~~L~~i~l~~---~i~~I~~~aF------~~c~~L~~i~lp~--~v~~I~~ 327 (394)
T 4gt6_A 264 CAYLASVKMPDSV--VSIG-TGA--FMNCPALQDIEFSS---RITELPESVF------AGCISLKSIDIPE--GITQILD 327 (394)
T ss_dssp CSSCCEEECCTTC--CEEC-TTT--TTTCTTCCEEECCT---TCCEECTTTT------TTCTTCCEEECCT--TCCEECT
T ss_pred cccccEEeccccc--ceec-Ccc--cccccccccccCCC---cccccCceee------cCCCCcCEEEeCC--cccEehH
Confidence 3566666664432 1111 112 66777788777754 4556665443 4557888888874 4666643
Q ss_pred -cCCCCCCccEEeeCCCCCCcccCCCCC--CCCccEEEecCCc
Q 018478 295 -SIVDLQNLTSLYLVGCPKLKYFPEKGL--PSSLLELWIGGCP 334 (355)
Q Consensus 295 -~~~~~~~L~~L~l~~~~~l~~~~~~~~--~~~L~~L~l~~c~ 334 (355)
.|.+|.+|+.+.+.+ .++.++...+ +.+|+.+++.+..
T Consensus 328 ~aF~~C~~L~~i~ip~--sv~~I~~~aF~~C~~L~~i~~~~~~ 368 (394)
T 4gt6_A 328 DAFAGCEQLERIAIPS--SVTKIPESAFSNCTALNNIEYSGSR 368 (394)
T ss_dssp TTTTTCTTCCEEEECT--TCCBCCGGGGTTCTTCCEEEESSCH
T ss_pred hHhhCCCCCCEEEECc--ccCEEhHhHhhCCCCCCEEEECCce
Confidence 567888999998864 4788877655 7889999887653
No 143
>3g39_A Variable lymphocyte receptor VLRB.2D; antibody, X-RAY, crystallography, immune system; 1.55A {Petromyzon marinus} PDB: 3g3a_A 3g3b_A 3twi_D
Probab=98.64 E-value=1.4e-07 Score=75.85 Aligned_cols=102 Identities=20% Similarity=0.256 Sum_probs=81.1
Q ss_pred cccEEEecCCCccchhccccccchhccccccCCCCCcccEEEEccCcchhch-hhhccCCCCCcEEEeeccCCcCcccc-
Q 018478 66 LLEELCISSCRSLTSIFSKNELSATLESLEVGNLPPSLKSLRVQGCSKLESI-AETLDNSTSLETIHIFYCENMKILPS- 143 (355)
Q Consensus 66 ~L~~L~l~~~~~l~~~~~~n~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~-~~~~~~l~~L~~L~l~~~~~~~~~~~- 143 (355)
..+.+++++. .++.+ |.. .+++|+.|++++|. +..+ |..+..+++|++|++++|. ++.++.
T Consensus 10 ~~~~l~~s~n-~l~~i-------------p~~-~~~~l~~L~L~~N~-i~~~~~~~~~~l~~L~~L~Ls~N~-l~~l~~~ 72 (170)
T 3g39_A 10 SGTTVDCSGK-SLASV-------------PTG-IPTTTQVLYLYDNQ-ITKLEPGVFDRLTQLTRLDLDNNQ-LTVLPAG 72 (170)
T ss_dssp ETTEEECTTS-CCSSC-------------CSC-CCTTCSEEECCSSC-CCCCCTTTTTTCTTCSEEECCSSC-CCCCCTT
T ss_pred CCCEEEeCCC-CcCcc-------------Ccc-CCCCCcEEEcCCCc-CCccChhhhcCcccCCEEECCCCC-cCccChh
Confidence 3567777763 55666 543 35799999999998 6666 5678899999999999988 666664
Q ss_pred cccCCCCCceEeccccCCCcCCCC-CCCCCCCcceEEEccccC
Q 018478 144 GLHNLRQLQEISIEGCGNLESFPE-GGLPCAKLKEVVIRWCGR 185 (355)
Q Consensus 144 ~~~~l~~L~~L~l~~~~~l~~~~~-~~~~~~~L~~L~l~~~~~ 185 (355)
.+..+++|+.|++++| .++.+|. .+..+++|+.|++++|..
T Consensus 73 ~f~~l~~L~~L~L~~N-~l~~~~~~~~~~l~~L~~L~L~~N~~ 114 (170)
T 3g39_A 73 VFDKLTQLTQLSLNDN-QLKSIPRGAFDNLKSLTHIWLLNNPW 114 (170)
T ss_dssp TTTTCTTCCEEECCSS-CCCCCCTTTTTTCTTCCEEECCSSCB
T ss_pred hccCCCCCCEEECCCC-ccCEeCHHHhcCCCCCCEEEeCCCCC
Confidence 4688999999999997 6777775 477899999999999753
No 144
>2r9u_A Variable lymphocyte receptor; adaptive immunity, VLR, leucine-rich repeat, LRR, system; 2.10A {Petromyzon marinus}
Probab=98.63 E-value=1.5e-07 Score=75.92 Aligned_cols=102 Identities=20% Similarity=0.306 Sum_probs=83.6
Q ss_pred ccEEEEccCcchhchhhhccCCCCCcEEEeeccCCcCcc-cccccCCCCCceEeccccCCCcCCCCC-CCCCCCcceEEE
Q 018478 103 LKSLRVQGCSKLESIAETLDNSTSLETIHIFYCENMKIL-PSGLHNLRQLQEISIEGCGNLESFPEG-GLPCAKLKEVVI 180 (355)
Q Consensus 103 L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~-~~~~~~l~~L~~L~l~~~~~l~~~~~~-~~~~~~L~~L~l 180 (355)
-+.++++++. +..+|..+. ++|++|++++|. +..+ |..+..+++|+.|++++| .++.+|.. +..+++|+.|++
T Consensus 14 ~~~l~~~~n~-l~~iP~~~~--~~L~~L~Ls~N~-l~~~~~~~~~~l~~L~~L~Ls~N-~l~~i~~~~~~~l~~L~~L~L 88 (174)
T 2r9u_A 14 QTLVNCQNIR-LASVPAGIP--TDKQRLWLNNNQ-ITKLEPGVFDHLVNLQQLYFNSN-KLTAIPTGVFDKLTQLTQLDL 88 (174)
T ss_dssp SSEEECCSSC-CSSCCSCCC--TTCSEEECCSSC-CCCCCTTTTTTCTTCCEEECCSS-CCCCCCTTTTTTCTTCCEEEC
T ss_pred CcEEEeCCCC-CCccCCCcC--CCCcEEEeCCCC-ccccCHHHhcCCcCCCEEECCCC-CCCccChhHhCCcchhhEEEC
Confidence 4788998877 788887663 899999999988 5554 677889999999999997 77888765 467999999999
Q ss_pred ccccCcCcccc-cccCCCCCceEEEeecCcC
Q 018478 181 RWCGRLEALPK-GLHNLKSLQKLTIGKGGLE 210 (355)
Q Consensus 181 ~~~~~~~~~p~-~l~~~~~L~~L~l~~~~i~ 210 (355)
++| .++.+|. .+..+++|++|+++.+.+.
T Consensus 89 ~~N-~l~~l~~~~~~~l~~L~~L~L~~N~~~ 118 (174)
T 2r9u_A 89 NDN-HLKSIPRGAFDNLKSLTHIYLYNNPWD 118 (174)
T ss_dssp CSS-CCCCCCTTTTTTCTTCSEEECCSSCBC
T ss_pred CCC-ccceeCHHHhccccCCCEEEeCCCCcc
Confidence 996 4666665 4899999999999865554
No 145
>4fs7_A Uncharacterized protein; leucine-rich repeats, protein binding, extracellular protein structural genomics; HET: MSE; 1.19A {Bacteroides ovatus}
Probab=98.62 E-value=1.5e-06 Score=79.62 Aligned_cols=269 Identities=15% Similarity=0.117 Sum_probs=167.3
Q ss_pred CCCCccEEeecccccCcccccCccC--CCcceEecccCccccccccc--cCcCCCCC-----------------------
Q 018478 4 TNSSLEILEIWSCRSLTYLAAVQLP--RSLKRLDIQCCSNIRTLTME--EGIQSSSS----------------------- 56 (355)
Q Consensus 4 ~~~~L~~L~l~~~~~l~~l~~~~~~--~~L~~L~l~~~~~l~~~~~~--~~~~~~~~----------------------- 56 (355)
++.+|+++.+. ..++.|+...|. ++|+.+++.. .++.++.. .+|..+..
T Consensus 69 ~c~~L~~i~lp--~~i~~I~~~aF~~c~~L~~i~lp~--~l~~I~~~aF~~c~~L~~i~~p~~l~~i~~~aF~~~~~~~~ 144 (394)
T 4fs7_A 69 GCRKVTEIKIP--STVREIGEFAFENCSKLEIINIPD--SVKMIGRCTFSGCYALKSILLPLMLKSIGVEAFKGCDFKEI 144 (394)
T ss_dssp TCTTEEEEECC--TTCCEECTTTTTTCTTCCEECCCT--TCCEECTTTTTTCTTCCCCCCCTTCCEECTTTTTTCCCSEE
T ss_pred CCCCceEEEeC--CCccCcchhHhhCCCCCcEEEeCC--CceEccchhhcccccchhhcccCceeeecceeeeccccccc
Confidence 46778888885 357788777775 6788888754 23433321 11111110
Q ss_pred ---------CCccccccccccEEEecCCCccchhccccccchhccccccC--CCCCcccEEEEccCcchhchh-hhccCC
Q 018478 57 ---------SSSRRYTSYLLEELCISSCRSLTSIFSKNELSATLESLEVG--NLPPSLKSLRVQGCSKLESIA-ETLDNS 124 (355)
Q Consensus 57 ---------~~~~~~~~~~L~~L~l~~~~~l~~~~~~n~~~~~~~~~~~~--~~~~~L~~L~l~~~~~~~~~~-~~~~~l 124 (355)
...+|.++++|+.+.+.. .++.+ ... ..+.+|+.+++..+ ++.+. ..+..+
T Consensus 145 ~~~~~~~~i~~~aF~~c~~L~~i~l~~--~~~~I-------------~~~~F~~c~~L~~i~l~~~--~~~I~~~~F~~~ 207 (394)
T 4fs7_A 145 TIPEGVTVIGDEAFATCESLEYVSLPD--SMETL-------------HNGLFSGCGKLKSIKLPRN--LKIIRDYCFAEC 207 (394)
T ss_dssp ECCTTCCEECTTTTTTCTTCCEEECCT--TCCEE-------------CTTTTTTCTTCCBCCCCTT--CCEECTTTTTTC
T ss_pred ccCccccccchhhhcccCCCcEEecCC--cccee-------------ccccccCCCCceEEEcCCC--ceEeCchhhccc
Confidence 133455566666666643 22223 222 33467888888654 44443 456778
Q ss_pred CCCcEEEeeccCCcCcccccccCCCCCceEeccccCCCcCCC-CCCCCCCCcceEEEccccCcCcccccccCCCCCceEE
Q 018478 125 TSLETIHIFYCENMKILPSGLHNLRQLQEISIEGCGNLESFP-EGGLPCAKLKEVVIRWCGRLEALPKGLHNLKSLQKLT 203 (355)
Q Consensus 125 ~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~l~~~~-~~~~~~~~L~~L~l~~~~~~~~~p~~l~~~~~L~~L~ 203 (355)
..|+.+.+..+. ..+........+|+.+.+... ...+. ..+..+.+++.+.+..+ ....-...+..+..++.+.
T Consensus 208 ~~L~~i~~~~~~--~~i~~~~~~~~~l~~i~ip~~--~~~i~~~~f~~~~~l~~~~~~~~-~~~i~~~~F~~~~~l~~~~ 282 (394)
T 4fs7_A 208 ILLENMEFPNSL--YYLGDFALSKTGVKNIIIPDS--FTELGKSVFYGCTDLESISIQNN-KLRIGGSLFYNCSGLKKVI 282 (394)
T ss_dssp TTCCBCCCCTTC--CEECTTTTTTCCCCEEEECTT--CCEECSSTTTTCSSCCEEEECCT-TCEECSCTTTTCTTCCEEE
T ss_pred cccceeecCCCc--eEeehhhcccCCCceEEECCC--ceecccccccccccceeEEcCCC-cceeeccccccccccceec
Confidence 889888776533 333334445678888888653 34443 35566889999988763 2233335778888888888
Q ss_pred EeecCcCCC--CCCCCccEEEecCCcchhhhhhhhcccCCCCCccceeEecccCCcccccCccccccCCCCCCCCccceE
Q 018478 204 IGKGGLEED--GLPTNLHSLDIRGNMEIWKSMIEWGQGFHRFSSLRELRIEGCDDDMVSFPPEDIRMGTTLPLPTSLTSL 281 (355)
Q Consensus 204 l~~~~i~~~--~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~~~L~~L 281 (355)
.....++.. ..+.+|+.+.+.++ ++.+.. .. |.++.+|+.+++.. .++.++...+ ....+|+.+
T Consensus 283 ~~~~~i~~~~F~~~~~L~~i~l~~~--i~~I~~-~a--F~~c~~L~~i~lp~---~v~~I~~~aF------~~c~~L~~i 348 (394)
T 4fs7_A 283 YGSVIVPEKTFYGCSSLTEVKLLDS--VKFIGE-EA--FESCTSLVSIDLPY---LVEEIGKRSF------RGCTSLSNI 348 (394)
T ss_dssp ECSSEECTTTTTTCTTCCEEEECTT--CCEECT-TT--TTTCTTCCEECCCT---TCCEECTTTT------TTCTTCCEE
T ss_pred cCceeeccccccccccccccccccc--cceech-hh--hcCCCCCCEEEeCC---cccEEhHHhc------cCCCCCCEE
Confidence 775445543 34578888888654 333322 22 88899999999975 3667766553 566789999
Q ss_pred EeccCCCcccccc-cCCCCCCccEEeeCCCCCCccc
Q 018478 282 AIFSFPNLERLSS-SIVDLQNLTSLYLVGCPKLKYF 316 (355)
Q Consensus 282 ~l~~~~~l~~l~~-~~~~~~~L~~L~l~~~~~l~~~ 316 (355)
.+.. +++.+.. .+.+|.+|+.+++... ++.+
T Consensus 349 ~lp~--~l~~I~~~aF~~C~~L~~i~lp~~--~~~~ 380 (394)
T 4fs7_A 349 NFPL--SLRKIGANAFQGCINLKKVELPKR--LEQY 380 (394)
T ss_dssp CCCT--TCCEECTTTBTTCTTCCEEEEEGG--GGGG
T ss_pred EECc--cccEehHHHhhCCCCCCEEEECCC--CEEh
Confidence 8875 4676654 5788999999998653 4444
No 146
>4gt6_A Cell surface protein; leucine rich repeats, putative protein binding, extracellula protein, structural genomics; HET: MSE; 1.80A {Faecalibacterium prausnitzii a2-165}
Probab=98.51 E-value=7.1e-06 Score=75.08 Aligned_cols=122 Identities=13% Similarity=0.129 Sum_probs=76.2
Q ss_pred cccCCCCCceEEEe--ecCcCCC--CCCCCccEEEecCCcchhhhhhhhcccCCCCCccceeEecccCCcccccCccccc
Q 018478 192 GLHNLKSLQKLTIG--KGGLEED--GLPTNLHSLDIRGNMEIWKSMIEWGQGFHRFSSLRELRIEGCDDDMVSFPPEDIR 267 (355)
Q Consensus 192 ~l~~~~~L~~L~l~--~~~i~~~--~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~ 267 (355)
+|..+.+|+.+.+. ...+... ..+++|+.+.+... ++.+.. .. |.++.+|+.+.+.. .++.++...+
T Consensus 260 aF~~c~~L~~i~lp~~~~~I~~~aF~~c~~L~~i~l~~~--i~~I~~-~a--F~~c~~L~~i~lp~---~v~~I~~~aF- 330 (394)
T 4gt6_A 260 AFDSCAYLASVKMPDSVVSIGTGAFMNCPALQDIEFSSR--ITELPE-SV--FAGCISLKSIDIPE---GITQILDDAF- 330 (394)
T ss_dssp TTTTCSSCCEEECCTTCCEECTTTTTTCTTCCEEECCTT--CCEECT-TT--TTTCTTCCEEECCT---TCCEECTTTT-
T ss_pred eeeecccccEEecccccceecCcccccccccccccCCCc--ccccCc-ee--ecCCCCcCEEEeCC---cccEehHhHh-
Confidence 56677888888775 2233332 34578888888542 333332 23 88999999999975 4667766553
Q ss_pred cCCCCCCCCccceEEeccCCCcccccc-cCCCCCCccEEeeCCCCCCcccCCCCCCCCccEEEec
Q 018478 268 MGTTLPLPTSLTSLAIFSFPNLERLSS-SIVDLQNLTSLYLVGCPKLKYFPEKGLPSSLLELWIG 331 (355)
Q Consensus 268 ~~~~~~~~~~L~~L~l~~~~~l~~l~~-~~~~~~~L~~L~l~~~~~l~~~~~~~~~~~L~~L~l~ 331 (355)
....+|+.+.+.+ .++.+.. .|.+|.+|+.+++.++. .....-..+.+|+.+.+.
T Consensus 331 -----~~C~~L~~i~ip~--sv~~I~~~aF~~C~~L~~i~~~~~~--~~~~~~~~~~~L~~i~i~ 386 (394)
T 4gt6_A 331 -----AGCEQLERIAIPS--SVTKIPESAFSNCTALNNIEYSGSR--SQWNAISTDSGLQNLPVA 386 (394)
T ss_dssp -----TTCTTCCEEEECT--TCCBCCGGGGTTCTTCCEEEESSCH--HHHHTCBCCCCC------
T ss_pred -----hCCCCCCEEEECc--ccCEEhHhHhhCCCCCCEEEECCce--eehhhhhccCCCCEEEeC
Confidence 5667899999974 5676654 57899999999998752 222221225667766654
No 147
>4h09_A Hypothetical leucine rich repeat protein; two LRR_5 domains, PF13306 family, structural genomics, JOIN for structural genomics, JCSG; 2.50A {Eubacterium ventriosum}
Probab=98.33 E-value=6.5e-05 Score=68.16 Aligned_cols=13 Identities=8% Similarity=0.289 Sum_probs=6.4
Q ss_pred ccccccccEEEec
Q 018478 61 RYTSYLLEELCIS 73 (355)
Q Consensus 61 ~~~~~~L~~L~l~ 73 (355)
|.++.+|+.+.+.
T Consensus 65 F~~C~~L~~I~lp 77 (379)
T 4h09_A 65 FNSCYNMTKVTVA 77 (379)
T ss_dssp TTTCTTCCEEEEC
T ss_pred hhCCCCCCEEEeC
Confidence 4445555555553
No 148
>2ifg_A High affinity nerve growth factor receptor; TRK, TRKA, receptor-ligand complex transferase; HET: NAG NDG MAN BMA; 3.40A {Homo sapiens} SCOP: b.1.1.4 b.1.1.4 c.10.2.7
Probab=98.31 E-value=1.3e-06 Score=78.44 Aligned_cols=88 Identities=17% Similarity=0.205 Sum_probs=63.7
Q ss_pred ccCCCCCcccEEEEcc-Ccchhchh-hhccCCCCCcEEEeeccCCcCcc-cccccCCCCCceEeccccCCCcCCCCCCCC
Q 018478 95 EVGNLPPSLKSLRVQG-CSKLESIA-ETLDNSTSLETIHIFYCENMKIL-PSGLHNLRQLQEISIEGCGNLESFPEGGLP 171 (355)
Q Consensus 95 ~~~~~~~~L~~L~l~~-~~~~~~~~-~~~~~l~~L~~L~l~~~~~~~~~-~~~~~~l~~L~~L~l~~~~~l~~~~~~~~~ 171 (355)
|....+.+|+.|+|++ |. +..++ ..|+.+++|++|++++|. +..+ +..+.++++|+.|++++| .+..+|.....
T Consensus 25 p~l~~~~~L~~L~l~~~n~-l~~~~~~~~~~l~~L~~L~l~~N~-l~~~~~~~~~~l~~L~~L~l~~N-~l~~~~~~~~~ 101 (347)
T 2ifg_A 25 HHLPGAENLTELYIENQQH-LQHLELRDLRGLGELRNLTIVKSG-LRFVAPDAFHFTPRLSRLNLSFN-ALESLSWKTVQ 101 (347)
T ss_dssp TTSCSCSCCSEEECCSCSS-CCEECGGGSCSCCCCSEEECCSSC-CCEECTTGGGSCSCCCEEECCSS-CCSCCCSTTTC
T ss_pred CCCCCCCCeeEEEccCCCC-CCCcChhHhccccCCCEEECCCCc-cceeCHHHhcCCcCCCEEeCCCC-ccceeCHHHcc
Confidence 5533446788999986 55 66665 567888899999998887 5544 456788888999999886 67777765544
Q ss_pred CCCcceEEEccccC
Q 018478 172 CAKLKEVVIRWCGR 185 (355)
Q Consensus 172 ~~~L~~L~l~~~~~ 185 (355)
..+|+.|++.+|..
T Consensus 102 ~~~L~~l~l~~N~~ 115 (347)
T 2ifg_A 102 GLSLQELVLSGNPL 115 (347)
T ss_dssp SCCCCEEECCSSCC
T ss_pred cCCceEEEeeCCCc
Confidence 33488888888653
No 149
>4h09_A Hypothetical leucine rich repeat protein; two LRR_5 domains, PF13306 family, structural genomics, JOIN for structural genomics, JCSG; 2.50A {Eubacterium ventriosum}
Probab=98.31 E-value=0.00018 Score=65.25 Aligned_cols=134 Identities=13% Similarity=0.141 Sum_probs=67.7
Q ss_pred CCCCCCcceEEEccccCcCccc-ccccCCCCCceEEEe--ecCcCCC--CCCCCccEEEecCCcchhhhhhhhcccCCCC
Q 018478 169 GLPCAKLKEVVIRWCGRLEALP-KGLHNLKSLQKLTIG--KGGLEED--GLPTNLHSLDIRGNMEIWKSMIEWGQGFHRF 243 (355)
Q Consensus 169 ~~~~~~L~~L~l~~~~~~~~~p-~~l~~~~~L~~L~l~--~~~i~~~--~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~l 243 (355)
+..+.+|+.+.+... +..+. .++..+..|+.+.+. ...+... ....+|+.+.+... ++.+.. .. +.++
T Consensus 213 f~~~~~l~~i~~~~~--~~~i~~~~f~~~~~L~~i~lp~~v~~I~~~aF~~~~~l~~i~l~~~--i~~i~~-~a--F~~c 285 (379)
T 4h09_A 213 FSYGKNLKKITITSG--VTTLGDGAFYGMKALDEIAIPKNVTSIGSFLLQNCTALKTLNFYAK--VKTVPY-LL--CSGC 285 (379)
T ss_dssp TTTCSSCSEEECCTT--CCEECTTTTTTCSSCCEEEECTTCCEECTTTTTTCTTCCEEEECCC--CSEECT-TT--TTTC
T ss_pred cccccccceeeeccc--eeEEccccccCCccceEEEcCCCccEeCccccceeehhcccccccc--ceeccc-cc--cccc
Confidence 333456666655431 22222 345566666666664 2222222 23355666665432 222221 12 5666
Q ss_pred CccceeEecccCCcccccCccccccCCCCCCCCccceEEeccCCCcccccc-cCCCCCCccEEeeCCCCCCcccCCCCC
Q 018478 244 SSLRELRIEGCDDDMVSFPPEDIRMGTTLPLPTSLTSLAIFSFPNLERLSS-SIVDLQNLTSLYLVGCPKLKYFPEKGL 321 (355)
Q Consensus 244 ~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~l~~-~~~~~~~L~~L~l~~~~~l~~~~~~~~ 321 (355)
++|+.+.+.+ ..++.+++..+ ....+|+.+.+.+ +++.+.. .|.++.+|+.+.+.. .++.++...+
T Consensus 286 ~~L~~i~l~~--~~i~~I~~~aF------~~c~~L~~i~lp~--~l~~I~~~aF~~C~~L~~i~ip~--~v~~I~~~aF 352 (379)
T 4h09_A 286 SNLTKVVMDN--SAIETLEPRVF------MDCVKLSSVTLPT--ALKTIQVYAFKNCKALSTISYPK--SITLIESGAF 352 (379)
T ss_dssp TTCCEEEECC--TTCCEECTTTT------TTCTTCCEEECCT--TCCEECTTTTTTCTTCCCCCCCT--TCCEECTTTT
T ss_pred cccccccccc--cccceehhhhh------cCCCCCCEEEcCc--cccEEHHHHhhCCCCCCEEEECC--ccCEEchhHh
Confidence 7777777765 44555555443 3445677766653 4555543 356666666666643 3555554433
No 150
>2ifg_A High affinity nerve growth factor receptor; TRK, TRKA, receptor-ligand complex transferase; HET: NAG NDG MAN BMA; 3.40A {Homo sapiens} SCOP: b.1.1.4 b.1.1.4 c.10.2.7
Probab=98.30 E-value=2.7e-06 Score=76.41 Aligned_cols=58 Identities=17% Similarity=0.256 Sum_probs=26.1
Q ss_pred CCcccEEEEccCcchhchh-hhccCCCCCcEEEeeccCCcCcccccccCCCCCceEecccc
Q 018478 100 PPSLKSLRVQGCSKLESIA-ETLDNSTSLETIHIFYCENMKILPSGLHNLRQLQEISIEGC 159 (355)
Q Consensus 100 ~~~L~~L~l~~~~~~~~~~-~~~~~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~ 159 (355)
+++|+.|+|++|. +..++ ..|..+++|++|++++|. +..+|..+.....|+.|++.+|
T Consensus 55 l~~L~~L~l~~N~-l~~~~~~~~~~l~~L~~L~l~~N~-l~~~~~~~~~~~~L~~l~l~~N 113 (347)
T 2ifg_A 55 LGELRNLTIVKSG-LRFVAPDAFHFTPRLSRLNLSFNA-LESLSWKTVQGLSLQELVLSGN 113 (347)
T ss_dssp CCCCSEEECCSSC-CCEECTTGGGSCSCCCEEECCSSC-CSCCCSTTTCSCCCCEEECCSS
T ss_pred ccCCCEEECCCCc-cceeCHHHhcCCcCCCEEeCCCCc-cceeCHHHcccCCceEEEeeCC
Confidence 3455555555554 33332 234455555555555544 3344332222222555555544
No 151
>2ra8_A Uncharacterized protein Q64V53_bacfr; WGR domain, LRR domain, leucine rich repeats, BFR43, structural genomics, PSI-2; 1.95A {Bacteroides fragilis}
Probab=98.27 E-value=1.5e-06 Score=78.33 Aligned_cols=82 Identities=22% Similarity=0.268 Sum_probs=44.1
Q ss_pred ccCCCCCcEEEeeccCC----c-----CcccccccCCCCCceEeccccCCCcCCCCCCCCCCCcceEEEccccCcCcccc
Q 018478 121 LDNSTSLETIHIFYCEN----M-----KILPSGLHNLRQLQEISIEGCGNLESFPEGGLPCAKLKEVVIRWCGRLEALPK 191 (355)
Q Consensus 121 ~~~l~~L~~L~l~~~~~----~-----~~~~~~~~~l~~L~~L~l~~~~~l~~~~~~~~~~~~L~~L~l~~~~~~~~~p~ 191 (355)
+.++++|+.|.+..... + ..+...+..+|+|+.|.+.++..+ .++. + .+++|++|++..|........
T Consensus 135 ~~~l~~L~~L~l~~~~~e~~~is~~~~~~L~~ll~~~P~L~~L~L~g~~~l-~l~~-~-~~~~L~~L~L~~~~l~~~~l~ 211 (362)
T 2ra8_A 135 KEKFAHFEGLFWGDIDFEEQEISWIEQVDLSPVLDAMPLLNNLKIKGTNNL-SIGK-K-PRPNLKSLEIISGGLPDSVVE 211 (362)
T ss_dssp HHHHTTCSEEEECCCCTTTCCGGGCBCCBCHHHHHTCTTCCEEEEECCBTC-BCCS-C-BCTTCSEEEEECSBCCHHHHH
T ss_pred hhhcchhhheeecCcchhhcccccccccCHHHHHhcCCCCcEEEEeCCCCc-eecc-c-cCCCCcEEEEecCCCChHHHH
Confidence 34466777777654321 0 123334455677888888765323 2333 2 256788888876542211112
Q ss_pred cc--cCCCCCceEEEe
Q 018478 192 GL--HNLKSLQKLTIG 205 (355)
Q Consensus 192 ~l--~~~~~L~~L~l~ 205 (355)
.+ ..+++|+.|.++
T Consensus 212 ~l~~~~lp~L~~L~L~ 227 (362)
T 2ra8_A 212 DILGSDLPNLEKLVLY 227 (362)
T ss_dssp HHHHSBCTTCCEEEEE
T ss_pred HHHHccCCCCcEEEEe
Confidence 23 256777777764
No 152
>3e4g_A ATP synthase subunit S, mitochondrial; leucine-rich repeat, CF0, hydrogen ION transport, inner membrane, ION transport, membrane, mitochondrion; 0.96A {Bos taurus} PDB: 3e3z_A 3dze_A 3e2j_A
Probab=98.21 E-value=1.7e-06 Score=69.21 Aligned_cols=92 Identities=13% Similarity=0.188 Sum_probs=47.7
Q ss_pred CCcceEecccCccccccccccCcCCCCCCCccccccccccEEEecCCCccchhccccccchhccccccC-CCCCcccEEE
Q 018478 29 RSLKRLDIQCCSNIRTLTMEEGIQSSSSSSSRRYTSYLLEELCISSCRSLTSIFSKNELSATLESLEVG-NLPPSLKSLR 107 (355)
Q Consensus 29 ~~L~~L~l~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~~~~~n~~~~~~~~~~~~-~~~~~L~~L~ 107 (355)
..|++|++++|. +....... +..+++|++|++++|..+++. .+... ... ...++|+.|+
T Consensus 61 ~~L~~LDLs~~~-Itd~GL~~-----------L~~~~~L~~L~L~~C~~ItD~----gL~~L----~~~~~~~~~L~~L~ 120 (176)
T 3e4g_A 61 YKIQAIDATDSC-IMSIGFDH-----------MEGLQYVEKIRLCKCHYIEDG----CLERL----SQLENLQKSMLEME 120 (176)
T ss_dssp CCEEEEEEESCC-CCGGGGGG-----------GTTCSCCCEEEEESCTTCCHH----HHHHH----HTCHHHHHHCCEEE
T ss_pred ceEeEEeCcCCC-ccHHHHHH-----------hcCCCCCCEEEeCCCCccCHH----HHHHH----HhcccccCCCCEEE
Confidence 356777777765 43322211 234667777777777665554 00000 000 0123577777
Q ss_pred EccCcchhch-hhhccCCCCCcEEEeeccCCcCc
Q 018478 108 VQGCSKLESI-AETLDNSTSLETIHIFYCENMKI 140 (355)
Q Consensus 108 l~~~~~~~~~-~~~~~~l~~L~~L~l~~~~~~~~ 140 (355)
+++|..++.- -..+..+++|++|++++|+.++.
T Consensus 121 Ls~C~~ITD~Gl~~L~~~~~L~~L~L~~c~~Itd 154 (176)
T 3e4g_A 121 IISCGNVTDKGIIALHHFRNLKYLFLSDLPGVKE 154 (176)
T ss_dssp EESCTTCCHHHHHHGGGCTTCCEEEEESCTTCCC
T ss_pred cCCCCcCCHHHHHHHhcCCCCCEEECCCCCCCCc
Confidence 7777655431 12344567777777777665554
No 153
>3e4g_A ATP synthase subunit S, mitochondrial; leucine-rich repeat, CF0, hydrogen ION transport, inner membrane, ION transport, membrane, mitochondrion; 0.96A {Bos taurus} PDB: 3e3z_A 3dze_A 3e2j_A
Probab=98.19 E-value=9.1e-07 Score=70.73 Aligned_cols=90 Identities=16% Similarity=0.196 Sum_probs=56.1
Q ss_pred CCccEEEecCCcchhhhhhhhcccCCCCCccceeEecccCCcccccCccccccCCCCCC----CCccceEEeccCCCccc
Q 018478 216 TNLHSLDIRGNMEIWKSMIEWGQGFHRFSSLRELRIEGCDDDMVSFPPEDIRMGTTLPL----PTSLTSLAIFSFPNLER 291 (355)
Q Consensus 216 ~~L~~L~l~~~~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~----~~~L~~L~l~~~~~l~~ 291 (355)
.+|+.||+++|. +++.-.. .+.++++|++|++++ |..+++-.-... .. .++|++|++++|.+++.
T Consensus 61 ~~L~~LDLs~~~-Itd~GL~---~L~~~~~L~~L~L~~-C~~ItD~gL~~L------~~~~~~~~~L~~L~Ls~C~~ITD 129 (176)
T 3e4g_A 61 YKIQAIDATDSC-IMSIGFD---HMEGLQYVEKIRLCK-CHYIEDGCLERL------SQLENLQKSMLEMEIISCGNVTD 129 (176)
T ss_dssp CCEEEEEEESCC-CCGGGGG---GGTTCSCCCEEEEES-CTTCCHHHHHHH------HTCHHHHHHCCEEEEESCTTCCH
T ss_pred ceEeEEeCcCCC-ccHHHHH---HhcCCCCCCEEEeCC-CCccCHHHHHHH------HhcccccCCCCEEEcCCCCcCCH
Confidence 367888888887 3332211 166888888888888 776654322110 11 13688888888877663
Q ss_pred cc-ccCCCCCCccEEeeCCCCCCccc
Q 018478 292 LS-SSIVDLQNLTSLYLVGCPKLKYF 316 (355)
Q Consensus 292 l~-~~~~~~~~L~~L~l~~~~~l~~~ 316 (355)
-. ..+..+++|++|++++|++++..
T Consensus 130 ~Gl~~L~~~~~L~~L~L~~c~~Itd~ 155 (176)
T 3e4g_A 130 KGIIALHHFRNLKYLFLSDLPGVKEK 155 (176)
T ss_dssp HHHHHGGGCTTCCEEEEESCTTCCCH
T ss_pred HHHHHHhcCCCCCEEECCCCCCCCch
Confidence 21 12355778888888888777653
No 154
>3un9_A NLR family member X1; leucine rich repeat (LRR), antiviral signaling, MAVS, TRAF6, UQCRC2, immune system; 2.65A {Homo sapiens}
Probab=98.16 E-value=8.5e-08 Score=87.13 Aligned_cols=58 Identities=17% Similarity=0.323 Sum_probs=25.2
Q ss_pred CcccEEEEccCcchhc-----hhhhcc-CCCCCcEEEeeccCCcCc-ccccccCCCCCceEecccc
Q 018478 101 PSLKSLRVQGCSKLES-----IAETLD-NSTSLETIHIFYCENMKI-LPSGLHNLRQLQEISIEGC 159 (355)
Q Consensus 101 ~~L~~L~l~~~~~~~~-----~~~~~~-~l~~L~~L~l~~~~~~~~-~~~~~~~l~~L~~L~l~~~ 159 (355)
++|+.|++++|. +.. +...+. ..++|++|++++|..-.. .......+++|+.|++++|
T Consensus 72 ~~L~~L~Ls~n~-l~~~~~~~l~~~L~~~~~~L~~L~Ls~n~l~~~~~~~l~~~L~~L~~L~Ls~n 136 (372)
T 3un9_A 72 SSLRQLNLAGVR-MTPVKCTVVAAVLGSGRHALDEVNLASCQLDPAGLRTLLPVFLRARKLGLQLN 136 (372)
T ss_dssp TTCCEEECTTSC-CCHHHHHHHHHHHSSCSSCEEEEECTTCCCCHHHHHHTHHHHHTEEEEECCSS
T ss_pred hhCCEEEecCCC-CCHHHHHHHHHHHhhCCCCceEEEecCCCCCHHHHHHHHHHHHhccHhhcCCC
Confidence 355666666655 321 222222 124666666666552111 1111112345566666555
No 155
>3un9_A NLR family member X1; leucine rich repeat (LRR), antiviral signaling, MAVS, TRAF6, UQCRC2, immune system; 2.65A {Homo sapiens}
Probab=98.10 E-value=2e-07 Score=84.74 Aligned_cols=158 Identities=15% Similarity=0.074 Sum_probs=101.7
Q ss_pred CCCCceEeccccCCCcC-----CCCCCC-CCCCcceEEEccccCcCcccccc-cCCCCCceEEEeecCcCCC--------
Q 018478 148 LRQLQEISIEGCGNLES-----FPEGGL-PCAKLKEVVIRWCGRLEALPKGL-HNLKSLQKLTIGKGGLEED-------- 212 (355)
Q Consensus 148 l~~L~~L~l~~~~~l~~-----~~~~~~-~~~~L~~L~l~~~~~~~~~p~~l-~~~~~L~~L~l~~~~i~~~-------- 212 (355)
+++|+.|++++|. ++. +...+. ..++|++|++++|.....-...+ ..+++|++|+++.+.+.+.
T Consensus 71 ~~~L~~L~Ls~n~-l~~~~~~~l~~~L~~~~~~L~~L~Ls~n~l~~~~~~~l~~~L~~L~~L~Ls~n~l~~~~~~~L~~~ 149 (372)
T 3un9_A 71 LSSLRQLNLAGVR-MTPVKCTVVAAVLGSGRHALDEVNLASCQLDPAGLRTLLPVFLRARKLGLQLNSLGPEACKDLRDL 149 (372)
T ss_dssp HTTCCEEECTTSC-CCHHHHHHHHHHHSSCSSCEEEEECTTCCCCHHHHHHTHHHHHTEEEEECCSSCCCHHHHHHHHHH
T ss_pred HhhCCEEEecCCC-CCHHHHHHHHHHHhhCCCCceEEEecCCCCCHHHHHHHHHHHHhccHhhcCCCCCCHHHHHHHHHH
Confidence 4679999999974 432 111111 23689999999975322111222 3467899999986666432
Q ss_pred --CCCCCccEEEecCCcchhhhhhhhcccCCCCCccceeEecccCCccccc-----CccccccCCCCCCCCccceEEecc
Q 018478 213 --GLPTNLHSLDIRGNMEIWKSMIEWGQGFHRFSSLRELRIEGCDDDMVSF-----PPEDIRMGTTLPLPTSLTSLAIFS 285 (355)
Q Consensus 213 --~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~-----~~~~~~~~~~~~~~~~L~~L~l~~ 285 (355)
...++|+.|++++|.........+...+...++|++|++++ +.++.. ...+ ...++|++|++++
T Consensus 150 L~~~~~~L~~L~Ls~n~l~~~~~~~l~~~L~~~~~L~~L~Ls~--N~l~~~g~~~L~~~L-------~~~~~L~~L~Ls~ 220 (372)
T 3un9_A 150 LLHDQCQITTLRLSNNPLTAAGVAVLMEGLAGNTSVTHLSLLH--TGLGDEGLELLAAQL-------DRNRQLQELNVAY 220 (372)
T ss_dssp HHSTTCCCCEEECCSSCCHHHHHHHHHHHHHTCSSCCEEECTT--SSCHHHHHHHHHHHG-------GGCSCCCEEECCS
T ss_pred HHhcCCccceeeCCCCCCChHHHHHHHHHHhcCCCcCEEeCCC--CCCCcHHHHHHHHHH-------hcCCCcCeEECCC
Confidence 23478999999999754433322222256788999999998 344432 2222 3456899999999
Q ss_pred CCCccc-----ccccCCCCCCccEEeeCCCCCCcccC
Q 018478 286 FPNLER-----LSSSIVDLQNLTSLYLVGCPKLKYFP 317 (355)
Q Consensus 286 ~~~l~~-----l~~~~~~~~~L~~L~l~~~~~l~~~~ 317 (355)
| .++. ++..+...++|++|++++| .++..+
T Consensus 221 N-~i~~~g~~~l~~~L~~~~~L~~L~Ls~N-~i~~~g 255 (372)
T 3un9_A 221 N-GAGDTAALALARAAREHPSLELLHLYFN-ELSSEG 255 (372)
T ss_dssp S-CCCHHHHHHHHHHHHHCSSCCEEECTTS-SCCHHH
T ss_pred C-CCCHHHHHHHHHHHHhCCCCCEEeccCC-CCCHHH
Confidence 4 5553 3333456789999999998 576543
No 156
>2ra8_A Uncharacterized protein Q64V53_bacfr; WGR domain, LRR domain, leucine rich repeats, BFR43, structural genomics, PSI-2; 1.95A {Bacteroides fragilis}
Probab=98.10 E-value=2.2e-06 Score=77.34 Aligned_cols=60 Identities=20% Similarity=0.197 Sum_probs=28.8
Q ss_pred hhhccCCCCCcEEEeeccCCcCcccccccCCCCCceEeccccCCCcCC-CCCC--CCCCCcceEEEc
Q 018478 118 AETLDNSTSLETIHIFYCENMKILPSGLHNLRQLQEISIEGCGNLESF-PEGG--LPCAKLKEVVIR 181 (355)
Q Consensus 118 ~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~l~~~-~~~~--~~~~~L~~L~l~ 181 (355)
...+..+|+|+.|.+.+|..+ .++. + .+++|+.|++..|. +..- ...+ ..+++|+.|++.
T Consensus 165 ~~ll~~~P~L~~L~L~g~~~l-~l~~-~-~~~~L~~L~L~~~~-l~~~~l~~l~~~~lp~L~~L~L~ 227 (362)
T 2ra8_A 165 SPVLDAMPLLNNLKIKGTNNL-SIGK-K-PRPNLKSLEIISGG-LPDSVVEDILGSDLPNLEKLVLY 227 (362)
T ss_dssp HHHHHTCTTCCEEEEECCBTC-BCCS-C-BCTTCSEEEEECSB-CCHHHHHHHHHSBCTTCCEEEEE
T ss_pred HHHHhcCCCCcEEEEeCCCCc-eecc-c-cCCCCcEEEEecCC-CChHHHHHHHHccCCCCcEEEEe
Confidence 344445666777766655322 2222 2 25667777666542 2110 0111 135567777664
No 157
>1io0_A Tropomodulin; LRR protein, right-handed super-helix, protein binding; 1.45A {Gallus gallus} SCOP: c.10.1.1
Probab=97.06 E-value=0.00015 Score=58.80 Aligned_cols=35 Identities=20% Similarity=0.359 Sum_probs=16.4
Q ss_pred CcccEEEEccC-cchh-----chhhhccCCCCCcEEEeeccC
Q 018478 101 PSLKSLRVQGC-SKLE-----SIAETLDNSTSLETIHIFYCE 136 (355)
Q Consensus 101 ~~L~~L~l~~~-~~~~-----~~~~~~~~l~~L~~L~l~~~~ 136 (355)
++|+.|++++| . +. .+...+...++|++|++++|.
T Consensus 36 ~~L~~L~L~~n~~-i~~~g~~~l~~~L~~~~~L~~L~Ls~n~ 76 (185)
T 1io0_A 36 PDLEEVNLNNIMN-IPVPTLKACAEALKTNTYVKKFSIVGTR 76 (185)
T ss_dssp TTCCEEECTTCTT-CCHHHHHHHHHHHTTCCSCCEEECTTSC
T ss_pred CCCCEEEecCCCC-CCHHHHHHHHHHHHhCCCcCEEECcCCC
Confidence 44555555554 2 21 123334444555555555554
No 158
>1io0_A Tropomodulin; LRR protein, right-handed super-helix, protein binding; 1.45A {Gallus gallus} SCOP: c.10.1.1
Probab=97.04 E-value=0.00021 Score=57.87 Aligned_cols=108 Identities=13% Similarity=0.102 Sum_probs=57.1
Q ss_pred CCccEEEecCC-cchhhhhhhhcccCCCCCccceeEecccCCcccc-----cCccccccCCCCCCCCccceEEeccCCCc
Q 018478 216 TNLHSLDIRGN-MEIWKSMIEWGQGFHRFSSLRELRIEGCDDDMVS-----FPPEDIRMGTTLPLPTSLTSLAIFSFPNL 289 (355)
Q Consensus 216 ~~L~~L~l~~~-~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~-----~~~~~~~~~~~~~~~~~L~~L~l~~~~~l 289 (355)
++|++|++++| .............+...++|++|++++ | .+.. +.... ...++|++|++++| .+
T Consensus 36 ~~L~~L~L~~n~~i~~~g~~~l~~~L~~~~~L~~L~Ls~-n-~i~~~g~~~l~~~L-------~~n~~L~~L~L~~N-~i 105 (185)
T 1io0_A 36 PDLEEVNLNNIMNIPVPTLKACAEALKTNTYVKKFSIVG-T-RSNDPVAFALAEML-------KVNNTLKSLNVESN-FI 105 (185)
T ss_dssp TTCCEEECTTCTTCCHHHHHHHHHHHTTCCSCCEEECTT-S-CCCHHHHHHHHHHH-------HHCSSCCEEECCSS-CC
T ss_pred CCCCEEEecCCCCCCHHHHHHHHHHHHhCCCcCEEECcC-C-CCChHHHHHHHHHH-------HhCCCcCEEECcCC-cC
Confidence 45555666666 332222221112245566777777776 2 2322 11111 23356777777773 44
Q ss_pred cc-----ccccCCCCCCccEEee--CCCCCCcccCCCCC------CCCccEEEecCCc
Q 018478 290 ER-----LSSSIVDLQNLTSLYL--VGCPKLKYFPEKGL------PSSLLELWIGGCP 334 (355)
Q Consensus 290 ~~-----l~~~~~~~~~L~~L~l--~~~~~l~~~~~~~~------~~~L~~L~l~~c~ 334 (355)
.. +...+...+.|++|++ ++| .+..-....+ .++|++|++.+|.
T Consensus 106 ~~~g~~~l~~~L~~n~~L~~L~L~~~~N-~i~~~g~~~l~~~L~~n~~L~~L~L~~n~ 162 (185)
T 1io0_A 106 SGSGILALVEALQSNTSLIELRIDNQSQ-PLGNNVEMEIANMLEKNTTLLKFGYHFTQ 162 (185)
T ss_dssp CHHHHHHHHHGGGGCSSCCEEECCCCSS-CCCHHHHHHHHHHHHHCSSCCEEECCCSS
T ss_pred CHHHHHHHHHHHHhCCCceEEEecCCCC-CCCHHHHHHHHHHHHhCCCcCEEeccCCC
Confidence 42 3444566677888888 555 5554321111 4778888888775
No 159
>3rw6_A Nuclear RNA export factor 1; retroviral constitutive transport element (CTE), RNA recogni motif (RRM); HET: GTP CCC; 2.30A {Homo sapiens} PDB: 3rw7_A 1koo_A 1koh_A 1ft8_A 1fo1_A
Probab=96.87 E-value=0.00052 Score=58.77 Aligned_cols=79 Identities=15% Similarity=0.133 Sum_probs=50.7
Q ss_pred cCCCCCcEEEeeccCCcCc---ccccccCCCCCceEeccccCCCcCCCCCCCCCC--CcceEEEccccCcCcccc-----
Q 018478 122 DNSTSLETIHIFYCENMKI---LPSGLHNLRQLQEISIEGCGNLESFPEGGLPCA--KLKEVVIRWCGRLEALPK----- 191 (355)
Q Consensus 122 ~~l~~L~~L~l~~~~~~~~---~~~~~~~l~~L~~L~l~~~~~l~~~~~~~~~~~--~L~~L~l~~~~~~~~~p~----- 191 (355)
..+++|+.|++++|. +.. ++..+..+++|+.|++++| .+..+. .+..+. +|++|++++|+....+|.
T Consensus 167 ~~l~~L~~L~Ls~N~-l~~l~~l~~~~~~l~~L~~L~Ls~N-~i~~~~-~l~~l~~l~L~~L~L~~Npl~~~~~~~~~y~ 243 (267)
T 3rw6_A 167 ENIPELLSLNLSNNR-LYRLDDMSSIVQKAPNLKILNLSGN-ELKSER-ELDKIKGLKLEELWLDGNSLCDTFRDQSTYI 243 (267)
T ss_dssp HHCTTCCEEECTTSC-CCCCGGGTTHHHHSTTCCEEECTTS-CCCSGG-GGGGGTTSCCSEEECTTSTTGGGCSSHHHHH
T ss_pred hhCCCCCEEECCCCC-CCCCccchhHHhhCCCCCEEECCCC-ccCCch-hhhhcccCCcceEEccCCcCccccCcchhHH
Confidence 347888888888877 443 3455567888888888886 455442 122223 788888888765443331
Q ss_pred --cccCCCCCceEE
Q 018478 192 --GLHNLKSLQKLT 203 (355)
Q Consensus 192 --~l~~~~~L~~L~ 203 (355)
.+..+++|+.|+
T Consensus 244 ~~il~~~P~L~~LD 257 (267)
T 3rw6_A 244 SAIRERFPKLLRLD 257 (267)
T ss_dssp HHHHHHCTTCCEES
T ss_pred HHHHHHCcccCeEC
Confidence 356677777664
No 160
>3rw6_A Nuclear RNA export factor 1; retroviral constitutive transport element (CTE), RNA recogni motif (RRM); HET: GTP CCC; 2.30A {Homo sapiens} PDB: 3rw7_A 1koo_A 1koh_A 1ft8_A 1fo1_A
Probab=96.63 E-value=0.00067 Score=58.12 Aligned_cols=78 Identities=19% Similarity=0.269 Sum_probs=54.8
Q ss_pred CCCcccEEEEccCcchhc---hhhhccCCCCCcEEEeeccCCcCcccccccCCC--CCceEeccccCCCcCCCC------
Q 018478 99 LPPSLKSLRVQGCSKLES---IAETLDNSTSLETIHIFYCENMKILPSGLHNLR--QLQEISIEGCGNLESFPE------ 167 (355)
Q Consensus 99 ~~~~L~~L~l~~~~~~~~---~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~l~--~L~~L~l~~~~~l~~~~~------ 167 (355)
.+++|+.|++++|. +.. +|..+..+++|+.|++++|. +..+ ..+..+. +|+.|++.+|+-...+|.
T Consensus 168 ~l~~L~~L~Ls~N~-l~~l~~l~~~~~~l~~L~~L~Ls~N~-i~~~-~~l~~l~~l~L~~L~L~~Npl~~~~~~~~~y~~ 244 (267)
T 3rw6_A 168 NIPELLSLNLSNNR-LYRLDDMSSIVQKAPNLKILNLSGNE-LKSE-RELDKIKGLKLEELWLDGNSLCDTFRDQSTYIS 244 (267)
T ss_dssp HCTTCCEEECTTSC-CCCCGGGTTHHHHSTTCCEEECTTSC-CCSG-GGGGGGTTSCCSEEECTTSTTGGGCSSHHHHHH
T ss_pred hCCCCCEEECCCCC-CCCCccchhHHhhCCCCCEEECCCCc-cCCc-hhhhhcccCCcceEEccCCcCccccCcchhHHH
Confidence 35789999999997 554 44556679999999999988 5544 2334444 899999999864444442
Q ss_pred -CCCCCCCcceEE
Q 018478 168 -GGLPCAKLKEVV 179 (355)
Q Consensus 168 -~~~~~~~L~~L~ 179 (355)
.+..+++|+.|+
T Consensus 245 ~il~~~P~L~~LD 257 (267)
T 3rw6_A 245 AIRERFPKLLRLD 257 (267)
T ss_dssp HHHHHCTTCCEES
T ss_pred HHHHHCcccCeEC
Confidence 233467888775
No 161
>3rfe_A Platelet glycoprotein IB beta chain; platelet surface receptor, GPIX, cell adhesion; HET: NAG; 1.25A {Homo sapiens} PDB: 3rez_A*
Probab=94.80 E-value=0.023 Score=42.72 Aligned_cols=37 Identities=27% Similarity=0.362 Sum_probs=21.8
Q ss_pred CCCccceEEeccCCCccccccc-CCCCCCccEEeeCCCC
Q 018478 274 LPTSLTSLAIFSFPNLERLSSS-IVDLQNLTSLYLVGCP 311 (355)
Q Consensus 274 ~~~~L~~L~l~~~~~l~~l~~~-~~~~~~L~~L~l~~~~ 311 (355)
.+++|++|++++ +.++.++.. +..+++|++|++.+|+
T Consensus 29 lp~~l~~L~Ls~-N~l~~l~~~~f~~l~~L~~L~L~~NP 66 (130)
T 3rfe_A 29 FPVDTTELVLTG-NNLTALPPGLLDALPALRTAHLGANP 66 (130)
T ss_dssp CCTTCSEEECTT-SCCSSCCTTTGGGCTTCCEEECCSSC
T ss_pred CCcCCCEEECCC-CcCCccChhhhhhccccCEEEecCCC
Confidence 345666666666 566666543 3556666666666653
No 162
>3rfe_A Platelet glycoprotein IB beta chain; platelet surface receptor, GPIX, cell adhesion; HET: NAG; 1.25A {Homo sapiens} PDB: 3rez_A*
Probab=94.27 E-value=0.067 Score=40.12 Aligned_cols=33 Identities=18% Similarity=0.369 Sum_probs=16.2
Q ss_pred ccceeEecccCCcccccCccccccCCCCCCCCccceEEecc
Q 018478 245 SLRELRIEGCDDDMVSFPPEDIRMGTTLPLPTSLTSLAIFS 285 (355)
Q Consensus 245 ~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~ 285 (355)
+|++|++++ +.++.++.+.+ ..+++|+.|++.+
T Consensus 32 ~l~~L~Ls~--N~l~~l~~~~f------~~l~~L~~L~L~~ 64 (130)
T 3rfe_A 32 DTTELVLTG--NNLTALPPGLL------DALPALRTAHLGA 64 (130)
T ss_dssp TCSEEECTT--SCCSSCCTTTG------GGCTTCCEEECCS
T ss_pred CCCEEECCC--CcCCccChhhh------hhccccCEEEecC
Confidence 455555554 44555554332 2344555555554
No 163
>1pgv_A TMD-1, tropomodulin TMD-1; structural genomics, PSI, protein structure initiative, southeast collaboratory for structural genomics secsg; 1.80A {Caenorhabditis elegans} SCOP: c.10.1.1
Probab=91.08 E-value=0.1 Score=42.23 Aligned_cols=59 Identities=17% Similarity=0.208 Sum_probs=28.7
Q ss_pred CcccEEEEccCcchh-----chhhhccCCCCCcEEEeeccCCcC----cccccccCCCCCceEecccc
Q 018478 101 PSLKSLRVQGCSKLE-----SIAETLDNSTSLETIHIFYCENMK----ILPSGLHNLRQLQEISIEGC 159 (355)
Q Consensus 101 ~~L~~L~l~~~~~~~-----~~~~~~~~l~~L~~L~l~~~~~~~----~~~~~~~~l~~L~~L~l~~~ 159 (355)
+.|+.|+++++..+. .+...+..-..|+.|++++|..-+ .+...+..-+.|+.|++++|
T Consensus 41 ~~L~~L~L~~nn~igd~ga~~la~aL~~N~~L~~L~L~~n~igd~ga~alA~aL~~N~tL~~L~L~~N 108 (197)
T 1pgv_A 41 TDLKEVNINNMKRVSKERIRSLIEAACNSKHIEKFSLANTAISDSEARGLIELIETSPSLRVLNVESN 108 (197)
T ss_dssp SSCCEEECTTCCSSCHHHHHHHHHHHTTCSCCCEEECTTSCCBHHHHTTHHHHHHHCSSCCEEECCSS
T ss_pred CCccEEECCCCCCCCHHHHHHHHHHHhhCCCcCEEEccCCCCChHHHHHHHHHHhcCCccCeEecCCC
Confidence 356666665541122 233444445566666666655221 12333334455666666655
No 164
>1pgv_A TMD-1, tropomodulin TMD-1; structural genomics, PSI, protein structure initiative, southeast collaboratory for structural genomics secsg; 1.80A {Caenorhabditis elegans} SCOP: c.10.1.1
Probab=87.15 E-value=0.38 Score=38.82 Aligned_cols=11 Identities=27% Similarity=0.459 Sum_probs=6.0
Q ss_pred CCCCceEeccc
Q 018478 148 LRQLQEISIEG 158 (355)
Q Consensus 148 l~~L~~L~l~~ 158 (355)
-+.|+.|++++
T Consensus 40 n~~L~~L~L~~ 50 (197)
T 1pgv_A 40 DTDLKEVNINN 50 (197)
T ss_dssp CSSCCEEECTT
T ss_pred CCCccEEECCC
Confidence 44556666654
No 165
>2lz0_A Uncharacterized protein; hypothetical leucine rich repeat protein, structural genomic unknown function; NMR {Bacteroides capillosus}
Probab=43.01 E-value=26 Score=24.36 Aligned_cols=45 Identities=16% Similarity=0.147 Sum_probs=29.5
Q ss_pred ccCcccccCccC--CCcceEecccCccccccccccCcCCCCCCCccccccccccEEEecC
Q 018478 17 RSLTYLAAVQLP--RSLKRLDIQCCSNIRTLTMEEGIQSSSSSSSRRYTSYLLEELCISS 74 (355)
Q Consensus 17 ~~l~~l~~~~~~--~~L~~L~l~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~ 74 (355)
..++.|....|. .+|+++.|-. .++.+.... |.++.+|+.+.+.+
T Consensus 6 ~~vt~I~~~aF~~c~~L~~i~iP~--~v~~Ig~~a-----------F~~C~~L~~i~~~~ 52 (100)
T 2lz0_A 6 EPVVGMDKSLFAGNTVIREITVQP--NIGLLYDGM-----------FSGCTALEKLILTG 52 (100)
T ss_dssp CCCCSSCSCTTTTCTTCCCEEECT--TSSCCCTTS-----------STTCTTCCCEEECC
T ss_pred CccCEecHHHhcCCCCCcEEEcCC--chheEcHHH-----------HhccCCccEEEEcC
Confidence 346666666665 6677777764 356555543 67788888888865
No 166
>2lz0_A Uncharacterized protein; hypothetical leucine rich repeat protein, structural genomic unknown function; NMR {Bacteroides capillosus}
Probab=34.57 E-value=45 Score=23.10 Aligned_cols=47 Identities=17% Similarity=0.190 Sum_probs=30.2
Q ss_pred CcccccCccccccCCCCCCCCccceEEeccCCCcccccc-cCCCCCCccEEeeCCC
Q 018478 256 DDMVSFPPEDIRMGTTLPLPTSLTSLAIFSFPNLERLSS-SIVDLQNLTSLYLVGC 310 (355)
Q Consensus 256 ~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~l~~-~~~~~~~L~~L~l~~~ 310 (355)
..++.+....+ ...++|+.+.+-. .++.+.. .|.+|.+|+.+.+..-
T Consensus 6 ~~vt~I~~~aF------~~c~~L~~i~iP~--~v~~Ig~~aF~~C~~L~~i~~~~~ 53 (100)
T 2lz0_A 6 EPVVGMDKSLF------AGNTVIREITVQP--NIGLLYDGMFSGCTALEKLILTGE 53 (100)
T ss_dssp CCCCSSCSCTT------TTCTTCCCEEECT--TSSCCCTTSSTTCTTCCCEEECCS
T ss_pred CccCEecHHHh------cCCCCCcEEEcCC--chheEcHHHHhccCCccEEEEcCC
Confidence 34555555443 4566788877774 5555543 4678888888888753
Done!