BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 018479
(355 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|3AQI|A Chain A, H240a Variant Of Human Ferrochelatase
pdb|3AQI|B Chain B, H240a Variant Of Human Ferrochelatase
Length = 359
Score = 178 bits (452), Expect = 3e-45, Method: Compositional matrix adjust.
Identities = 101/245 (41%), Positives = 142/245 (57%), Gaps = 7/245 (2%)
Query: 21 ELRKSLWEKNLPAKVYVGMRYWHPFTEEAIEQIKRDGITKLVVLPLYPQFSISTSGSSLR 80
+L L P K Y+G RY HP TEEAIE+++RDG+ + + YPQ+S ST+GSSL
Sbjct: 81 KLLDELSPNTAPHKYYIGFRYVHPLTEEAIEEMERDGLERAIAFTQYPQYSCSTTGSSLN 140
Query: 81 LLESIFREDEYLVNMQHTVIPSWYQREGYITAMANLIEKELQNF--DSPEQVMIFFSAHG 138
+ + + M+ + I W I A+ I KEL +F + +V+I FSAH
Sbjct: 141 AIYRYYNQVGRKPTMKWSTIDRWPTHHLLIQCFADAILKELDHFPLEKRSEVVILFSAHS 200
Query: 139 VPLAYVEEAGDPYKAEMEECVDLIMEELEKRKITNAYTLAYQSRVGPVEWLKPYTDETII 198
+P++ V GDPY E+ V +ME LE N Y L +QS+VGP+ WL P TDE+I
Sbjct: 201 LPMSVVNR-GDPYPQEVSATVQKVMERLE---YCNPYRLVWQSKVGPMPWLGPQTDESIK 256
Query: 199 KLGQKGVKSLLAVPISFVSEHIETLEEIDVEYKE-LALKSGIEKWGRVPALGCEATFISD 257
L ++G K++L VPI+F S+HIETL E+D+EY + LA + G+E R +L F
Sbjct: 257 GLCERGRKNILLVPIAFTSDHIETLYELDIEYSQVLAKECGVENIRRAESLNGNPLFSKA 316
Query: 258 LADAV 262
LAD V
Sbjct: 317 LADLV 321
>pdb|2QD2|A Chain A, F110a Variant Of Human Ferrochelatase With Protoheme Bound
pdb|2QD2|B Chain B, F110a Variant Of Human Ferrochelatase With Protoheme Bound
pdb|3HCP|A Chain A, Human Ferrochelatase With Mn And Deuteroporphyrin Bound
pdb|3HCP|B Chain B, Human Ferrochelatase With Mn And Deuteroporphyrin Bound
Length = 359
Score = 178 bits (451), Expect = 4e-45, Method: Compositional matrix adjust.
Identities = 99/234 (42%), Positives = 139/234 (59%), Gaps = 7/234 (2%)
Query: 32 PAKVYVGMRYWHPFTEEAIEQIKRDGITKLVVLPLYPQFSISTSGSSLRLLESIFREDEY 91
P K Y+G RY HP TEEAIE+++RDG+ + + YPQ+S ST+GSSL + + +
Sbjct: 92 PHKYYIGFRYVHPLTEEAIEEMERDGLERAIAFTQYPQYSCSTTGSSLNAIYRYYNQVGR 151
Query: 92 LVNMQHTVIPSWYQREGYITAMANLIEKELQNF--DSPEQVMIFFSAHGVPLAYVEEAGD 149
M+ + I W I A+ I KEL +F + +V+I FSAH +P++ V GD
Sbjct: 152 KPTMKWSTIDRWPTHHLLIQCFADHILKELDHFPLEKRSEVVILFSAHSLPMSVVNR-GD 210
Query: 150 PYKAEMEECVDLIMEELEKRKITNAYTLAYQSRVGPVEWLKPYTDETIIKLGQKGVKSLL 209
PY E+ V +ME LE N Y L +QS+VGP+ WL P TDE+I L ++G K++L
Sbjct: 211 PYPQEVSATVQKVMERLE---YCNPYRLVWQSKVGPMPWLGPQTDESIKGLCERGRKNIL 267
Query: 210 AVPISFVSEHIETLEEIDVEYKE-LALKSGIEKWGRVPALGCEATFISDLADAV 262
VPI+F S+HIETL E+D+EY + LA + G+E R +L F LAD V
Sbjct: 268 LVPIAFTSDHIETLYELDIEYSQVLAKECGVENIRRAESLNGNPLFSKALADLV 321
>pdb|1HRK|A Chain A, Crystal Structure Of Human Ferrochelatase
pdb|1HRK|B Chain B, Crystal Structure Of Human Ferrochelatase
pdb|2HRC|A Chain A, 1.7 Angstrom Structure Of Human Ferrochelatase Variant
R115l
pdb|2HRC|B Chain B, 1.7 Angstrom Structure Of Human Ferrochelatase Variant
R115l
Length = 359
Score = 178 bits (451), Expect = 5e-45, Method: Compositional matrix adjust.
Identities = 99/234 (42%), Positives = 139/234 (59%), Gaps = 7/234 (2%)
Query: 32 PAKVYVGMRYWHPFTEEAIEQIKRDGITKLVVLPLYPQFSISTSGSSLRLLESIFREDEY 91
P K Y+G RY HP TEEAIE+++RDG+ + + YPQ+S ST+GSSL + + +
Sbjct: 92 PHKYYIGFRYVHPLTEEAIEEMERDGLERAIAFTQYPQYSCSTTGSSLNAIYRYYNQVGR 151
Query: 92 LVNMQHTVIPSWYQREGYITAMANLIEKELQNF--DSPEQVMIFFSAHGVPLAYVEEAGD 149
M+ + I W I A+ I KEL +F + +V+I FSAH +P++ V GD
Sbjct: 152 KPTMKWSTIDRWPTHHLLIQCFADHILKELDHFPLEKRSEVVILFSAHSLPMSVVNR-GD 210
Query: 150 PYKAEMEECVDLIMEELEKRKITNAYTLAYQSRVGPVEWLKPYTDETIIKLGQKGVKSLL 209
PY E+ V +ME LE N Y L +QS+VGP+ WL P TDE+I L ++G K++L
Sbjct: 211 PYPQEVSATVQKVMERLE---YCNPYRLVWQSKVGPMPWLGPQTDESIKGLCERGRKNIL 267
Query: 210 AVPISFVSEHIETLEEIDVEYKE-LALKSGIEKWGRVPALGCEATFISDLADAV 262
VPI+F S+HIETL E+D+EY + LA + G+E R +L F LAD V
Sbjct: 268 LVPIAFTSDHIETLYELDIEYSQVLAKECGVENIRRAESLNGNPLFSKALADLV 321
>pdb|2QD3|A Chain A, Wild Type Human Ferrochelatase Crystallized With Ammonium
Sulfate
pdb|2QD3|B Chain B, Wild Type Human Ferrochelatase Crystallized With Ammonium
Sulfate
pdb|2QD4|A Chain A, Wild Type Human Ferrochelatase Crystallized With Mncl2
pdb|2QD4|B Chain B, Wild Type Human Ferrochelatase Crystallized With Mncl2
pdb|2QD5|A Chain A, Structure Of Wild Type Human Ferrochelatase In Complex
With A Lead- Porphyrin Compound
pdb|2QD5|B Chain B, Structure Of Wild Type Human Ferrochelatase In Complex
With A Lead- Porphyrin Compound
pdb|3HCN|A Chain A, Hg And Protoporphyrin Bound Human Ferrochelatase
pdb|3HCN|B Chain B, Hg And Protoporphyrin Bound Human Ferrochelatase
pdb|3HCO|A Chain A, Human Ferrochelatase With Cd And Protoporphyrin Ix Bound
pdb|3HCO|B Chain B, Human Ferrochelatase With Cd And Protoporphyrin Ix Bound
pdb|3HCR|A Chain A, Human Ferrochelatase With Deuteroporphyrin And Ni Bound
pdb|3HCR|B Chain B, Human Ferrochelatase With Deuteroporphyrin And Ni Bound
Length = 359
Score = 178 bits (451), Expect = 5e-45, Method: Compositional matrix adjust.
Identities = 99/234 (42%), Positives = 139/234 (59%), Gaps = 7/234 (2%)
Query: 32 PAKVYVGMRYWHPFTEEAIEQIKRDGITKLVVLPLYPQFSISTSGSSLRLLESIFREDEY 91
P K Y+G RY HP TEEAIE+++RDG+ + + YPQ+S ST+GSSL + + +
Sbjct: 92 PHKYYIGFRYVHPLTEEAIEEMERDGLERAIAFTQYPQYSCSTTGSSLNAIYRYYNQVGR 151
Query: 92 LVNMQHTVIPSWYQREGYITAMANLIEKELQNF--DSPEQVMIFFSAHGVPLAYVEEAGD 149
M+ + I W I A+ I KEL +F + +V+I FSAH +P++ V GD
Sbjct: 152 KPTMKWSTIDRWPTHHLLIQCFADHILKELDHFPLEKRSEVVILFSAHSLPMSVVNR-GD 210
Query: 150 PYKAEMEECVDLIMEELEKRKITNAYTLAYQSRVGPVEWLKPYTDETIIKLGQKGVKSLL 209
PY E+ V +ME LE N Y L +QS+VGP+ WL P TDE+I L ++G K++L
Sbjct: 211 PYPQEVSATVQKVMERLE---YCNPYRLVWQSKVGPMPWLGPQTDESIKGLCERGRKNIL 267
Query: 210 AVPISFVSEHIETLEEIDVEYKE-LALKSGIEKWGRVPALGCEATFISDLADAV 262
VPI+F S+HIETL E+D+EY + LA + G+E R +L F LAD V
Sbjct: 268 LVPIAFTSDHIETLYELDIEYSQVLAKECGVENIRRAESLNGNPLFSKALADLV 321
>pdb|2HRE|A Chain A, Structure Of Human Ferrochelatase Variant E343k With
Protoporphyrin Ix Bound
pdb|2HRE|B Chain B, Structure Of Human Ferrochelatase Variant E343k With
Protoporphyrin Ix Bound
pdb|2HRE|C Chain C, Structure Of Human Ferrochelatase Variant E343k With
Protoporphyrin Ix Bound
pdb|2HRE|D Chain D, Structure Of Human Ferrochelatase Variant E343k With
Protoporphyrin Ix Bound
pdb|2QD1|A Chain A, 2.2 Angstrom Structure Of The Human Ferrochelatase Variant
E343k With Substrate Bound
pdb|2QD1|B Chain B, 2.2 Angstrom Structure Of The Human Ferrochelatase Variant
E343k With Substrate Bound
pdb|2QD1|C Chain C, 2.2 Angstrom Structure Of The Human Ferrochelatase Variant
E343k With Substrate Bound
pdb|2QD1|D Chain D, 2.2 Angstrom Structure Of The Human Ferrochelatase Variant
E343k With Substrate Bound
Length = 359
Score = 176 bits (447), Expect = 1e-44, Method: Compositional matrix adjust.
Identities = 98/234 (41%), Positives = 139/234 (59%), Gaps = 7/234 (2%)
Query: 32 PAKVYVGMRYWHPFTEEAIEQIKRDGITKLVVLPLYPQFSISTSGSSLRLLESIFREDEY 91
P K Y+G RY HP TEEAIE+++RDG+ + + YPQ+S ST+GSSL + + +
Sbjct: 92 PHKYYIGFRYVHPLTEEAIEEMERDGLERAIAFTQYPQYSCSTTGSSLNAIYRYYNQVGR 151
Query: 92 LVNMQHTVIPSWYQREGYITAMANLIEKELQNF--DSPEQVMIFFSAHGVPLAYVEEAGD 149
M+ + I W I A+ I KEL +F + +V+I FSAH +P++ V GD
Sbjct: 152 KPTMKWSTIDRWPTHHLLIQCFADHILKELDHFPLEKRSEVVILFSAHSLPMSVVNR-GD 210
Query: 150 PYKAEMEECVDLIMEELEKRKITNAYTLAYQSRVGPVEWLKPYTDETIIKLGQKGVKSLL 209
PY E+ V +ME LE N Y L +QS+VGP+ WL P TDE+I L ++G K++L
Sbjct: 211 PYPQEVSATVQKVMERLE---YCNPYRLVWQSKVGPMPWLGPQTDESIKGLCERGRKNIL 267
Query: 210 AVPISFVSEHIETLEEIDVEYKE-LALKSGIEKWGRVPALGCEATFISDLADAV 262
VPI+F S+HI+TL E+D+EY + LA + G+E R +L F LAD V
Sbjct: 268 LVPIAFTSDHIKTLYELDIEYSQVLAKECGVENIRRAESLNGNPLFSKALADLV 321
>pdb|4F4D|A Chain A, F337r Variant Of Human Ferrochelatase
pdb|4F4D|B Chain B, F337r Variant Of Human Ferrochelatase
Length = 359
Score = 174 bits (442), Expect = 5e-44, Method: Compositional matrix adjust.
Identities = 98/234 (41%), Positives = 138/234 (58%), Gaps = 7/234 (2%)
Query: 32 PAKVYVGMRYWHPFTEEAIEQIKRDGITKLVVLPLYPQFSISTSGSSLRLLESIFREDEY 91
P K Y+G RY HP TEEAIE+++RDG+ + + YPQ+S ST+GSSL + + +
Sbjct: 92 PHKYYIGFRYVHPLTEEAIEEMERDGLERAIAFTQYPQYSCSTTGSSLNAIYRYYNQVGR 151
Query: 92 LVNMQHTVIPSWYQREGYITAMANLIEKELQNF--DSPEQVMIFFSAHGVPLAYVEEAGD 149
M+ + I W I A+ I KEL +F + +V+I FSAH +P++ V GD
Sbjct: 152 KPTMKWSTIDRWPTHHLLIQCFADHILKELDHFPLEKRSEVVILFSAHSLPMSVVNR-GD 210
Query: 150 PYKAEMEECVDLIMEELEKRKITNAYTLAYQSRVGPVEWLKPYTDETIIKLGQKGVKSLL 209
PY E+ V +ME LE N Y L +QS+VGP+ WL P TDE+I L ++G K++L
Sbjct: 211 PYPQEVSATVQKVMERLE---YCNPYRLVWQSKVGPMPWLGPQTDESIKGLCERGRKNIL 267
Query: 210 AVPISFVSEHIETLEEIDVEYKE-LALKSGIEKWGRVPALGCEATFISDLADAV 262
VPI+ S+HIETL E+D+EY + LA + G+E R +L F LAD V
Sbjct: 268 LVPIARTSDHIETLYELDIEYSQVLAKECGVENIRRAESLNGNPLFSKALADLV 321
>pdb|2PNJ|A Chain A, Crystal Structure Of Human Ferrochelatase Mutant With Phe
337 Replaced By Ala
pdb|2PNJ|B Chain B, Crystal Structure Of Human Ferrochelatase Mutant With Phe
337 Replaced By Ala
Length = 359
Score = 174 bits (442), Expect = 5e-44, Method: Compositional matrix adjust.
Identities = 98/234 (41%), Positives = 138/234 (58%), Gaps = 7/234 (2%)
Query: 32 PAKVYVGMRYWHPFTEEAIEQIKRDGITKLVVLPLYPQFSISTSGSSLRLLESIFREDEY 91
P K Y+G RY HP TEEAIE+++RDG+ + + YPQ+S ST+GSSL + + +
Sbjct: 92 PHKYYIGFRYVHPLTEEAIEEMERDGLERAIAFTQYPQYSCSTTGSSLNAIYRYYNQVGR 151
Query: 92 LVNMQHTVIPSWYQREGYITAMANLIEKELQNF--DSPEQVMIFFSAHGVPLAYVEEAGD 149
M+ + I W I A+ I KEL +F + +V+I FSAH +P++ V GD
Sbjct: 152 KPTMKWSTIDRWPTHHLLIQCFADHILKELDHFPLEKRSEVVILFSAHSLPMSVVNR-GD 210
Query: 150 PYKAEMEECVDLIMEELEKRKITNAYTLAYQSRVGPVEWLKPYTDETIIKLGQKGVKSLL 209
PY E+ V +ME LE N Y L +QS+VGP+ WL P TDE+I L ++G K++L
Sbjct: 211 PYPQEVSATVQKVMERLE---YCNPYRLVWQSKVGPMPWLGPQTDESIKGLCERGRKNIL 267
Query: 210 AVPISFVSEHIETLEEIDVEYKE-LALKSGIEKWGRVPALGCEATFISDLADAV 262
VPI+ S+HIETL E+D+EY + LA + G+E R +L F LAD V
Sbjct: 268 LVPIAATSDHIETLYELDIEYSQVLAKECGVENIRRAESLNGNPLFSKALADLV 321
>pdb|2PO5|A Chain A, Crystal Structure Of Human Ferrochelatase Mutant With His
263 Replaced By Cys
pdb|2PO5|B Chain B, Crystal Structure Of Human Ferrochelatase Mutant With His
263 Replaced By Cys
Length = 359
Score = 174 bits (440), Expect = 8e-44, Method: Compositional matrix adjust.
Identities = 98/234 (41%), Positives = 138/234 (58%), Gaps = 7/234 (2%)
Query: 32 PAKVYVGMRYWHPFTEEAIEQIKRDGITKLVVLPLYPQFSISTSGSSLRLLESIFREDEY 91
P K Y+G RY HP TEEAIE+++RDG+ + + YPQ+S ST+GSSL + + +
Sbjct: 92 PHKYYIGFRYVHPLTEEAIEEMERDGLERAIAFTQYPQYSCSTTGSSLNAIYRYYNQVGR 151
Query: 92 LVNMQHTVIPSWYQREGYITAMANLIEKELQNF--DSPEQVMIFFSAHGVPLAYVEEAGD 149
M+ + I W I A+ I KEL +F + +V+I FSA +P++ V GD
Sbjct: 152 KPTMKWSTIDRWPTHHLLIQCFADHILKELDHFPLEKRSEVVILFSACSLPMSVVNR-GD 210
Query: 150 PYKAEMEECVDLIMEELEKRKITNAYTLAYQSRVGPVEWLKPYTDETIIKLGQKGVKSLL 209
PY E+ V +ME LE N Y L +QS+VGP+ WL P TDE+I L ++G K++L
Sbjct: 211 PYPQEVSATVQKVMERLE---YCNPYRLVWQSKVGPMPWLGPQTDESIKGLCERGRKNIL 267
Query: 210 AVPISFVSEHIETLEEIDVEYKE-LALKSGIEKWGRVPALGCEATFISDLADAV 262
VPI+F S+HIETL E+D+EY + LA + G+E R +L F LAD V
Sbjct: 268 LVPIAFTSDHIETLYELDIEYSQVLAKECGVENIRRAESLNGNPLFSKALADLV 321
>pdb|2PO7|A Chain A, Crystal Structure Of Human Ferrochelatase Mutant With His
341 Replaced By Cys
pdb|2PO7|B Chain B, Crystal Structure Of Human Ferrochelatase Mutant With His
341 Replaced By Cys
Length = 359
Score = 174 bits (440), Expect = 9e-44, Method: Compositional matrix adjust.
Identities = 100/245 (40%), Positives = 141/245 (57%), Gaps = 7/245 (2%)
Query: 21 ELRKSLWEKNLPAKVYVGMRYWHPFTEEAIEQIKRDGITKLVVLPLYPQFSISTSGSSLR 80
+L L P K Y+G RY HP TEEAIE+++RDG+ + + YPQ+S ST+GSSL
Sbjct: 81 KLLDELSPNTAPHKYYIGFRYVHPLTEEAIEEMERDGLERAIAFTQYPQYSCSTTGSSLN 140
Query: 81 LLESIFREDEYLVNMQHTVIPSWYQREGYITAMANLIEKELQNF--DSPEQVMIFFSAHG 138
+ + + M+ + I W I A+ I KEL +F + +V+I FSAH
Sbjct: 141 AIYRYYNQVGRKPTMKWSTIDRWPTHHLLIQCFADHILKELDHFPLEKRSEVVILFSAHS 200
Query: 139 VPLAYVEEAGDPYKAEMEECVDLIMEELEKRKITNAYTLAYQSRVGPVEWLKPYTDETII 198
+P++ V GDPY E+ V +ME LE N Y L +QS+VGP+ WL P TDE+I
Sbjct: 201 LPMSVVNR-GDPYPQEVSATVQKVMERLE---YCNPYRLVWQSKVGPMPWLGPQTDESIK 256
Query: 199 KLGQKGVKSLLAVPISFVSEHIETLEEIDVEYKE-LALKSGIEKWGRVPALGCEATFISD 257
L ++G K++L VPI+F S+ IETL E+D+EY + LA + G+E R +L F
Sbjct: 257 GLCERGRKNILLVPIAFTSDCIETLYELDIEYSQVLAKECGVENIRRAESLNGNPLFSKA 316
Query: 258 LADAV 262
LAD V
Sbjct: 317 LADLV 321
>pdb|1L8X|A Chain A, Crystal Structure Of Ferrochelatase From The Yeast,
Saccharomyces Cerevisiae, With Cobalt(Ii) As The
Substrate Ion
pdb|1L8X|B Chain B, Crystal Structure Of Ferrochelatase From The Yeast,
Saccharomyces Cerevisiae, With Cobalt(Ii) As The
Substrate Ion
pdb|1LBQ|A Chain A, The Crystal Structure Of Saccharomyces Cerevisiae
Ferrochelatase
pdb|1LBQ|B Chain B, The Crystal Structure Of Saccharomyces Cerevisiae
Ferrochelatase
Length = 362
Score = 144 bits (363), Expect = 8e-35, Method: Compositional matrix adjust.
Identities = 96/243 (39%), Positives = 129/243 (53%), Gaps = 21/243 (8%)
Query: 32 PAKVYVGMRYWHPFTEEAIEQIKRDGITKLVVLPLYPQFSISTSGSSLRLLESIFREDEY 91
P K YV RY P T E +Q+ +DG+ K V YP FS ST+GSS+ L + +
Sbjct: 97 PHKPYVAFRYAKPLTAETYKQMLKDGVKKAVAFSQYPHFSYSTTGSSINELWRQIKALDS 156
Query: 92 LVNMQHTVIPSWYQREGYITAMANLIEKELQNFDSP--EQVMIFFSAHGVPLAYVEEAGD 149
++ +VI W EG I A + I K+LQ F P ++V++ FSAH +P+ V GD
Sbjct: 157 ERSISWSVIDRWPTNEGLIKAFSENITKKLQEFPQPVRDKVVLLFSAHSLPMDVV-NTGD 215
Query: 150 PYKAEMEECVDLIMEELEKRKITNAYTLAYQSRVGPVEWLKPYTDETIIKLGQKGVKSLL 209
Y AE+ V IM++L K N Y L +QS+VGP WL T E LG K V L+
Sbjct: 216 AYPAEVAATVYNIMQKL---KFKNPYRLVWQSQVGPKPWLGAQTAEIAEFLGPK-VDGLM 271
Query: 210 AVPISFVSEHIETLEEIDV------EYKELALKSGIEKWGRVPALGCEATFISDLADAVI 263
+PI+F S+HIETL EID+ EYK +K+ R +L TFI +AD V
Sbjct: 272 FIPIAFTSDHIETLHEIDLGVIGESEYK--------DKFKRCESLNGNQTFIEGMADLVK 323
Query: 264 ESL 266
L
Sbjct: 324 SHL 326
>pdb|3GOQ|A Chain A, Crystal Structure Of The Tyr13met Variant Of Bacillus
Subtilis Ferrochelatase
Length = 310
Score = 98.2 bits (243), Expect = 6e-21, Method: Compositional matrix adjust.
Identities = 81/263 (30%), Positives = 127/263 (48%), Gaps = 17/263 (6%)
Query: 11 LAIISCIQAEELRKSLWE--KNLPAKVYVGMRYWHPFTEEAIEQIKRDGITKLVVLPLYP 68
LA I+ QA L + L E + K Y+G+++ PF E+A+ ++ +DGIT+ V + L P
Sbjct: 56 LAQITEQQAHNLEQHLNEIQDEITFKAYIGLKHIEPFIEDAVAEMHKDGITEAVSIVLAP 115
Query: 69 QFS-ISTSGSSLRLLESIFREDEYLVNMQHTVIPSWYQREGYITAMANLIEKELQNF--D 125
FS S + R E E E L + T + SWY ++T + +++ + D
Sbjct: 116 HFSTFSVQSYNKRAKE----EAEKLGGLTITSVESWYDEPKFVTYWVDRVKETYASMPED 171
Query: 126 SPEQVMIFFSAHGVPLAYVEEAGDPYKAEMEECVDLIMEELEKRKITNAYTLAYQSRVG- 184
E M+ SAH +P ++E GDPY ++ E LI E + Y + +QS
Sbjct: 172 ERENAMLIVSAHSLP-EKIKEFGDPYPDQLHESAKLIAEGAG----VSEYAVGWQSEGNT 226
Query: 185 PVEWLKP-YTDETIIKLGQKGVKSLLAVPISFVSEHIETLEEIDVEYKELALKSGIEKWG 243
P WL P D T QKG ++ + VP+ FV++H+E L + D E K + G +
Sbjct: 227 PDPWLGPDVQDLTRDLFEQKGYQAFVYVPVGFVADHLEVLYDNDYECKVVTDDIGASYY- 285
Query: 244 RVPALGCEATFISDLADAVIESL 266
R + FI LA V++ L
Sbjct: 286 RPEMPNAKPEFIDALATVVLKKL 308
>pdb|1C1H|A Chain A, Crystal Structure Of Bacillus Subtilis Ferrochelatase In
Complex With N-Methyl Mesoporphyrin
pdb|1LD3|A Chain A, Crystal Structure Of B. Subilis Ferrochelatase With Zn(2+)
Bound At The Active Site.
pdb|1N0I|A Chain A, Crystal Structure Of Ferrochelatase With Cadmium Bound At
Active Site
pdb|2HK6|A Chain A, Crystal Structure Of B. Subtilis Ferrochelatase With Iron
Bound At The Active Site
pdb|1AK1|A Chain A, Ferrochelatase From Bacillus Subtilis
Length = 310
Score = 98.2 bits (243), Expect = 6e-21, Method: Compositional matrix adjust.
Identities = 81/263 (30%), Positives = 127/263 (48%), Gaps = 17/263 (6%)
Query: 11 LAIISCIQAEELRKSLWE--KNLPAKVYVGMRYWHPFTEEAIEQIKRDGITKLVVLPLYP 68
LA I+ QA L + L E + K Y+G+++ PF E+A+ ++ +DGIT+ V + L P
Sbjct: 56 LAQITEQQAHNLEQHLNEIQDEITFKAYIGLKHIEPFIEDAVAEMHKDGITEAVSIVLAP 115
Query: 69 QFS-ISTSGSSLRLLESIFREDEYLVNMQHTVIPSWYQREGYITAMANLIEKELQNF--D 125
FS S + R E E E L + T + SWY ++T + +++ + D
Sbjct: 116 HFSTFSVQSYNKRAKE----EAEKLGGLTITSVESWYDEPKFVTYWVDRVKETYASMPED 171
Query: 126 SPEQVMIFFSAHGVPLAYVEEAGDPYKAEMEECVDLIMEELEKRKITNAYTLAYQSRVG- 184
E M+ SAH +P ++E GDPY ++ E LI E + Y + +QS
Sbjct: 172 ERENAMLIVSAHSLP-EKIKEFGDPYPDQLHESAKLIAEGAG----VSEYAVGWQSEGNT 226
Query: 185 PVEWLKP-YTDETIIKLGQKGVKSLLAVPISFVSEHIETLEEIDVEYKELALKSGIEKWG 243
P WL P D T QKG ++ + VP+ FV++H+E L + D E K + G +
Sbjct: 227 PDPWLGPDVQDLTRDLFEQKGYQAFVYVPVGFVADHLEVLYDNDYECKVVTDDIGASYY- 285
Query: 244 RVPALGCEATFISDLADAVIESL 266
R + FI LA V++ L
Sbjct: 286 RPEMPNAKPEFIDALATVVLKKL 308
>pdb|1DOZ|A Chain A, Crystal Structure Of Ferrochelatase
pdb|2Q2N|A Chain A, Crystal Structure Of Bacillus Subtilis Ferrochelatase In
Complex With Deuteroporphyrin Ix 2,4-Disulfonic Acid
Dihydrochloride
pdb|3M4Z|A Chain A, Crystal Structure Of B. Subtilis Ferrochelatase With
Cobalt Bound At The Active Site
Length = 309
Score = 98.2 bits (243), Expect = 6e-21, Method: Compositional matrix adjust.
Identities = 81/263 (30%), Positives = 127/263 (48%), Gaps = 17/263 (6%)
Query: 11 LAIISCIQAEELRKSLWE--KNLPAKVYVGMRYWHPFTEEAIEQIKRDGITKLVVLPLYP 68
LA I+ QA L + L E + K Y+G+++ PF E+A+ ++ +DGIT+ V + L P
Sbjct: 55 LAQITEQQAHNLEQHLNEIQDEITFKAYIGLKHIEPFIEDAVAEMHKDGITEAVSIVLAP 114
Query: 69 QFS-ISTSGSSLRLLESIFREDEYLVNMQHTVIPSWYQREGYITAMANLIEKELQNF--D 125
FS S + R E E E L + T + SWY ++T + +++ + D
Sbjct: 115 HFSTFSVQSYNKRAKE----EAEKLGGLTITSVESWYDEPKFVTYWVDRVKETYASMPED 170
Query: 126 SPEQVMIFFSAHGVPLAYVEEAGDPYKAEMEECVDLIMEELEKRKITNAYTLAYQSRVG- 184
E M+ SAH +P ++E GDPY ++ E LI E + Y + +QS
Sbjct: 171 ERENAMLIVSAHSLP-EKIKEFGDPYPDQLHESAKLIAEGAG----VSEYAVGWQSEGNT 225
Query: 185 PVEWLKP-YTDETIIKLGQKGVKSLLAVPISFVSEHIETLEEIDVEYKELALKSGIEKWG 243
P WL P D T QKG ++ + VP+ FV++H+E L + D E K + G +
Sbjct: 226 PDPWLGPDVQDLTRDLFEQKGYQAFVYVPVGFVADHLEVLYDNDYECKVVTDDIGASYY- 284
Query: 244 RVPALGCEATFISDLADAVIESL 266
R + FI LA V++ L
Sbjct: 285 RPEMPNAKPEFIDALATVVLKKL 307
>pdb|1C9E|A Chain A, Structure Of Ferrochelatase With Copper(Ii) N-
Methylmesoporphyrin Complex Bound At The Active Site
Length = 306
Score = 98.2 bits (243), Expect = 6e-21, Method: Compositional matrix adjust.
Identities = 81/263 (30%), Positives = 127/263 (48%), Gaps = 17/263 (6%)
Query: 11 LAIISCIQAEELRKSLWE--KNLPAKVYVGMRYWHPFTEEAIEQIKRDGITKLVVLPLYP 68
LA I+ QA L + L E + K Y+G+++ PF E+A+ ++ +DGIT+ V + L P
Sbjct: 52 LAQITEQQAHNLEQHLNEIQDEITFKAYIGLKHIEPFIEDAVAEMHKDGITEAVSIVLAP 111
Query: 69 QFS-ISTSGSSLRLLESIFREDEYLVNMQHTVIPSWYQREGYITAMANLIEKELQNF--D 125
FS S + R E E E L + T + SWY ++T + +++ + D
Sbjct: 112 HFSTFSVQSYNKRAKE----EAEKLGGLTITSVESWYDEPKFVTYWVDRVKETYASMPED 167
Query: 126 SPEQVMIFFSAHGVPLAYVEEAGDPYKAEMEECVDLIMEELEKRKITNAYTLAYQSRVG- 184
E M+ SAH +P ++E GDPY ++ E LI E + Y + +QS
Sbjct: 168 ERENAMLIVSAHSLP-EKIKEFGDPYPDQLHESAKLIAE----GAGVSEYAVGWQSEGNT 222
Query: 185 PVEWLKP-YTDETIIKLGQKGVKSLLAVPISFVSEHIETLEEIDVEYKELALKSGIEKWG 243
P WL P D T QKG ++ + VP+ FV++H+E L + D E K + G +
Sbjct: 223 PDPWLGPDVQDLTRDLFEQKGYQAFVYVPVGFVADHLEVLYDNDYECKVVTDDIGASYY- 281
Query: 244 RVPALGCEATFISDLADAVIESL 266
R + FI LA V++ L
Sbjct: 282 RPEMPNAKPEFIDALATVVLKKL 304
>pdb|2AC2|A Chain A, Crystal Structure Of The Tyr13phe Mutant Variant Of
Bacillus Subtilis Ferrochelatase With Zn(2+) Bound At
The Active Site
Length = 309
Score = 98.2 bits (243), Expect = 7e-21, Method: Compositional matrix adjust.
Identities = 81/263 (30%), Positives = 127/263 (48%), Gaps = 17/263 (6%)
Query: 11 LAIISCIQAEELRKSLWE--KNLPAKVYVGMRYWHPFTEEAIEQIKRDGITKLVVLPLYP 68
LA I+ QA L + L E + K Y+G+++ PF E+A+ ++ +DGIT+ V + L P
Sbjct: 55 LAQITEQQAHNLEQHLNEIQDEITFKAYIGLKHIEPFIEDAVAEMHKDGITEAVSIVLAP 114
Query: 69 QFS-ISTSGSSLRLLESIFREDEYLVNMQHTVIPSWYQREGYITAMANLIEKELQNF--D 125
FS S + R E E E L + T + SWY ++T + +++ + D
Sbjct: 115 HFSTFSVQSYNKRAKE----EAEKLGGLTITSVESWYDEPKFVTYWVDRVKETYASMPED 170
Query: 126 SPEQVMIFFSAHGVPLAYVEEAGDPYKAEMEECVDLIMEELEKRKITNAYTLAYQSRVG- 184
E M+ SAH +P ++E GDPY ++ E LI E + Y + +QS
Sbjct: 171 ERENAMLIVSAHSLP-EKIKEFGDPYPDQLHESAKLIAEGAG----VSEYAVGWQSEGNT 225
Query: 185 PVEWLKP-YTDETIIKLGQKGVKSLLAVPISFVSEHIETLEEIDVEYKELALKSGIEKWG 243
P WL P D T QKG ++ + VP+ FV++H+E L + D E K + G +
Sbjct: 226 PDPWLGPDVQDLTRDLFEQKGYQAFVYVPVGFVADHLEVLYDNDYECKVVTDDIGASYY- 284
Query: 244 RVPALGCEATFISDLADAVIESL 266
R + FI LA V++ L
Sbjct: 285 RPEMPNAKPEFIDALATVVLKKL 307
>pdb|2H1V|A Chain A, Crystal Structure Of The Lys87ala Mutant Variant Of
Bacillus Subtilis Ferrochelatase
Length = 310
Score = 96.7 bits (239), Expect = 2e-20, Method: Compositional matrix adjust.
Identities = 81/263 (30%), Positives = 126/263 (47%), Gaps = 17/263 (6%)
Query: 11 LAIISCIQAEELRKSLWE--KNLPAKVYVGMRYWHPFTEEAIEQIKRDGITKLVVLPLYP 68
LA I+ QA L + L E + K Y+G+ + PF E+A+ ++ +DGIT+ V + L P
Sbjct: 56 LAQITEQQAHNLEQHLNEIQDEITFKAYIGLAHIEPFIEDAVAEMHKDGITEAVSIVLAP 115
Query: 69 QFS-ISTSGSSLRLLESIFREDEYLVNMQHTVIPSWYQREGYITAMANLIEKELQNF--D 125
FS S + R E E E L + T + SWY ++T + +++ + D
Sbjct: 116 HFSTFSVQSYNKRAKE----EAEKLGGLTITSVESWYDEPKFVTYWVDRVKETYASMPED 171
Query: 126 SPEQVMIFFSAHGVPLAYVEEAGDPYKAEMEECVDLIMEELEKRKITNAYTLAYQSRVG- 184
E M+ SAH +P ++E GDPY ++ E LI E + Y + +QS
Sbjct: 172 ERENAMLIVSAHSLP-EKIKEFGDPYPDQLHESAKLIAEGAG----VSEYAVGWQSEGNT 226
Query: 185 PVEWLKP-YTDETIIKLGQKGVKSLLAVPISFVSEHIETLEEIDVEYKELALKSGIEKWG 243
P WL P D T QKG ++ + VP+ FV++H+E L + D E K + G +
Sbjct: 227 PDPWLGPDVQDLTRDLFEQKGYQAFVYVPVGFVADHLEVLYDNDYECKVVTDDIGASYY- 285
Query: 244 RVPALGCEATFISDLADAVIESL 266
R + FI LA V++ L
Sbjct: 286 RPEMPNAKPEFIDALATVVLKKL 308
>pdb|2H1W|A Chain A, Crystal Structure Of The His183ala Mutant Variant Of
Bacillus Subtilis Ferrochelatase
Length = 310
Score = 94.4 bits (233), Expect = 9e-20, Method: Compositional matrix adjust.
Identities = 80/263 (30%), Positives = 126/263 (47%), Gaps = 17/263 (6%)
Query: 11 LAIISCIQAEELRKSLWE--KNLPAKVYVGMRYWHPFTEEAIEQIKRDGITKLVVLPLYP 68
LA I+ QA L + L E + K Y+G+++ PF E+A+ ++ +DGIT+ V + L P
Sbjct: 56 LAQITEQQAHNLEQHLNEIQDEITFKAYIGLKHIEPFIEDAVAEMHKDGITEAVSIVLAP 115
Query: 69 QFS-ISTSGSSLRLLESIFREDEYLVNMQHTVIPSWYQREGYITAMANLIEKELQNF--D 125
FS S + R E E E L + T + SWY ++T + +++ + D
Sbjct: 116 HFSTFSVQSYNKRAKE----EAEKLGGLTITSVESWYDEPKFVTYWVDRVKETYASMPED 171
Query: 126 SPEQVMIFFSAHGVPLAYVEEAGDPYKAEMEECVDLIMEELEKRKITNAYTLAYQSRVG- 184
E M+ SA +P ++E GDPY ++ E LI E + Y + +QS
Sbjct: 172 ERENAMLIVSAASLP-EKIKEFGDPYPDQLHESAKLIAEGAG----VSEYAVGWQSEGNT 226
Query: 185 PVEWLKP-YTDETIIKLGQKGVKSLLAVPISFVSEHIETLEEIDVEYKELALKSGIEKWG 243
P WL P D T QKG ++ + VP+ FV++H+E L + D E K + G +
Sbjct: 227 PDPWLGPDVQDLTRDLFEQKGYQAFVYVPVGFVADHLEVLYDNDYECKVVTDDIGASYY- 285
Query: 244 RVPALGCEATFISDLADAVIESL 266
R + FI LA V++ L
Sbjct: 286 RPEMPNAKPEFIDALATVVLKKL 308
>pdb|2Q3J|A Chain A, Crystal Structure Of The His183ala Variant Of Bacillus
Subtilis Ferrochelatase In Complex With N-Methyl
Mesoporphyrin
Length = 309
Score = 94.4 bits (233), Expect = 9e-20, Method: Compositional matrix adjust.
Identities = 80/263 (30%), Positives = 126/263 (47%), Gaps = 17/263 (6%)
Query: 11 LAIISCIQAEELRKSLWE--KNLPAKVYVGMRYWHPFTEEAIEQIKRDGITKLVVLPLYP 68
LA I+ QA L + L E + K Y+G+++ PF E+A+ ++ +DGIT+ V + L P
Sbjct: 55 LAQITEQQAHNLEQHLNEIQDEITFKAYIGLKHIEPFIEDAVAEMHKDGITEAVSIVLAP 114
Query: 69 QFS-ISTSGSSLRLLESIFREDEYLVNMQHTVIPSWYQREGYITAMANLIEKELQNF--D 125
FS S + R E E E L + T + SWY ++T + +++ + D
Sbjct: 115 HFSTFSVQSYNKRAKE----EAEKLGGLTITSVESWYDEPKFVTYWVDRVKETYASMPED 170
Query: 126 SPEQVMIFFSAHGVPLAYVEEAGDPYKAEMEECVDLIMEELEKRKITNAYTLAYQSRVG- 184
E M+ SA +P ++E GDPY ++ E LI E + Y + +QS
Sbjct: 171 ERENAMLIVSAASLP-EKIKEFGDPYPDQLHESAKLIAEGAG----VSEYAVGWQSEGNT 225
Query: 185 PVEWLKP-YTDETIIKLGQKGVKSLLAVPISFVSEHIETLEEIDVEYKELALKSGIEKWG 243
P WL P D T QKG ++ + VP+ FV++H+E L + D E K + G +
Sbjct: 226 PDPWLGPDVQDLTRDLFEQKGYQAFVYVPVGFVADHLEVLYDNDYECKVVTDDIGASYY- 284
Query: 244 RVPALGCEATFISDLADAVIESL 266
R + FI LA V++ L
Sbjct: 285 RPEMPNAKPEFIDALATVVLKKL 307
>pdb|2AC4|A Chain A, Crystal Structure Of The His183cys Mutant Variant Of
Bacillus Subtilis Ferrochelatase
pdb|2Q2O|A Chain A, Crystal Structure Of H183c Bacillus Subtilis
Ferrochelatase In Complex With Deuteroporphyrin Ix
2,4-Disulfonic Acid Dihydrochloride
Length = 309
Score = 94.0 bits (232), Expect = 1e-19, Method: Compositional matrix adjust.
Identities = 80/263 (30%), Positives = 126/263 (47%), Gaps = 17/263 (6%)
Query: 11 LAIISCIQAEELRKSLWE--KNLPAKVYVGMRYWHPFTEEAIEQIKRDGITKLVVLPLYP 68
LA I+ QA L + L E + K Y+G+++ PF E+A+ ++ +DGIT+ V + L P
Sbjct: 55 LAQITEQQAHNLEQHLNEIQDEITFKAYIGLKHIEPFIEDAVAEMHKDGITEAVSIVLAP 114
Query: 69 QFS-ISTSGSSLRLLESIFREDEYLVNMQHTVIPSWYQREGYITAMANLIEKELQNF--D 125
FS S + R E E E L + T + SWY ++T + +++ + D
Sbjct: 115 HFSTFSVQSYNKRAKE----EAEKLGGLTITSVESWYDEPKFVTYWVDRVKETYASMPED 170
Query: 126 SPEQVMIFFSAHGVPLAYVEEAGDPYKAEMEECVDLIMEELEKRKITNAYTLAYQSRVG- 184
E M+ SA +P ++E GDPY ++ E LI E + Y + +QS
Sbjct: 171 ERENAMLIVSACSLP-EKIKEFGDPYPDQLHESAKLIAEGAG----VSEYAVGWQSEGNT 225
Query: 185 PVEWLKP-YTDETIIKLGQKGVKSLLAVPISFVSEHIETLEEIDVEYKELALKSGIEKWG 243
P WL P D T QKG ++ + VP+ FV++H+E L + D E K + G +
Sbjct: 226 PDPWLGPDVQDLTRDLFEQKGYQAFVYVPVGFVADHLEVLYDNDYECKVVTDDIGASYY- 284
Query: 244 RVPALGCEATFISDLADAVIESL 266
R + FI LA V++ L
Sbjct: 285 RPEMPNAKPEFIDALATVVLKKL 307
>pdb|2C8J|A Chain A, Crystal Structure Of Ferrochelatase Hemh-1 From Bacillus
Anthracis, Str. Ames
pdb|2C8J|B Chain B, Crystal Structure Of Ferrochelatase Hemh-1 From Bacillus
Anthracis, Str. Ames
Length = 311
Score = 89.0 bits (219), Expect = 4e-18, Method: Compositional matrix adjust.
Identities = 74/260 (28%), Positives = 123/260 (47%), Gaps = 15/260 (5%)
Query: 11 LAIISCIQAEELRKSLWE--KNLPAKVYVGMRYWHPFTEEAIEQIKRDGITKLVVLPLYP 68
LA I+ QA++L K L E + +Y+G+++ PF E+A++++ DGI + L L P
Sbjct: 55 LATITLEQAKKLEKRLNEVQDEVEYHMYLGLKHIEPFIEDAVKEMHNDGIQDAIALVLAP 114
Query: 69 QFSISTSGSSLRLLESIFREDEYLVNMQHTVIPSWYQREGYITAMANLIEKELQNFDSP- 127
+S + S + + E E L N+ I SWY+ +I + ++
Sbjct: 115 HYSTFSVKSYVGRAQ---EEAEKLGNLTIHGIDSWYKEPKFIQYWVDAVKSIYSGMSDAE 171
Query: 128 -EQVMIFFSAHGVPLAYVEEAGDPYKAEMEECVDLIMEELEKRKITNAYTLAYQSRVG-P 185
E+ ++ SAH +P + GDPY ++ E D I E + N Y + +QS P
Sbjct: 172 REKAVLIVSAHSLPEKII-AMGDPYPDQLNETADYIARGAE---VAN-YAVGWQSAGNTP 226
Query: 186 VEWLKPYTDETIIKLGQK-GVKSLLAVPISFVSEHIETLEEIDVEYKELALKSGIEKWGR 244
W+ P + +L +K G S + P+ FV+EH+E L + D E K + + G K+ R
Sbjct: 227 DPWIGPDVQDLTRELNEKYGYTSFVYAPVGFVAEHLEVLYDNDFECKVVTDEIGA-KYYR 285
Query: 245 VPALGCEATFISDLADAVIE 264
FI L D V++
Sbjct: 286 PEMPNASDAFIDCLTDVVVK 305
>pdb|2YWD|A Chain A, Crystal Structure Of Glutamine Amidotransferase
Length = 191
Score = 29.3 bits (64), Expect = 3.9, Method: Compositional matrix adjust.
Identities = 20/57 (35%), Positives = 30/57 (52%), Gaps = 1/57 (1%)
Query: 203 KGVKSLLAVPISFVSEHIETLEEIDVEYKELALKSGIEKWGRVPALGCEATFISDLA 259
+GV +LA+ F EH E L+ + +E KE+ K +E + G E+T I LA
Sbjct: 2 RGVVGVLALQGDF-REHKEALKRLGIEAKEVRKKEHLEGLKALIVPGGESTTIGKLA 57
>pdb|2VKD|A Chain A, Crystal Structure Of The Catalytic Domain Of Lethal Toxin
From Clostridium Sordellii In Complex With Udp-glc And
Manganese Ion
pdb|2VKD|B Chain B, Crystal Structure Of The Catalytic Domain Of Lethal Toxin
From Clostridium Sordellii In Complex With Udp-glc And
Manganese Ion
pdb|2VKD|C Chain C, Crystal Structure Of The Catalytic Domain Of Lethal Toxin
From Clostridium Sordellii In Complex With Udp-glc And
Manganese Ion
pdb|2VKH|A Chain A, Crystal Structure Of The Catalytic Domain Of Lethal Toxin
From Clostridium Sordellii In Complex With Udp-glc And
Calcium Ion
pdb|2VKH|B Chain B, Crystal Structure Of The Catalytic Domain Of Lethal Toxin
From Clostridium Sordellii In Complex With Udp-glc And
Calcium Ion
pdb|2VKH|C Chain C, Crystal Structure Of The Catalytic Domain Of Lethal Toxin
From Clostridium Sordellii In Complex With Udp-glc And
Calcium Ion
pdb|2VL8|A Chain A, Crystal Structure Of The Catalytic Domain Of Lethal Toxin
From Clostridium Sordellii In Complex With Udp,
Castanospermine And Calcium Ion
pdb|2VL8|B Chain B, Crystal Structure Of The Catalytic Domain Of Lethal Toxin
From Clostridium Sordellii In Complex With Udp,
Castanospermine And Calcium Ion
pdb|2VL8|C Chain C, Crystal Structure Of The Catalytic Domain Of Lethal Toxin
From Clostridium Sordellii In Complex With Udp,
Castanospermine And Calcium Ion
Length = 546
Score = 28.1 bits (61), Expect = 7.4, Method: Compositional matrix adjust.
Identities = 22/92 (23%), Positives = 45/92 (48%), Gaps = 9/92 (9%)
Query: 111 TAMANLIEKELQNFDSPEQVMIFFSAHGVPLAYVEEAG--DPYKAEMEECVDLIMEELEK 168
+A N +E +N + PE F + + Y ++ D YK+++EE + I++ + K
Sbjct: 148 SATNNTLESFRENLNDPEFDYNKFYRKRMEIIYDKQKHFIDYYKSQIEENPEFIIDNIIK 207
Query: 169 RKITNAYTLAYQSRVGPVEWLKPYTDETIIKL 200
++N Y+ +E L Y +E++ K+
Sbjct: 208 TYLSNEYS-------KDLEALNKYIEESLNKI 232
>pdb|2BVL|A Chain A, Crystal Structure Of The Catalytic Domain Of Toxin B From
Clostridium Difficile In Complex With Udp, Glc And
Manganese Ion
Length = 543
Score = 28.1 bits (61), Expect = 7.6, Method: Compositional matrix adjust.
Identities = 26/123 (21%), Positives = 58/123 (47%), Gaps = 19/123 (15%)
Query: 85 IFREDEYLVN-MQHTVIPSWYQREGYITAMANLIEKELQNFDSPEQVMIFFSAHGVPLAY 143
+ + +L+N ++ TV+ S A+ + +E +N + P F + + Y
Sbjct: 130 FYDSNAFLINTLKKTVVES---------AINDTLESFRENLNDPRFDYNKFFRKRMEIIY 180
Query: 144 VEEAG--DPYKAEMEECVDLIMEELEKRKITNAYTLAYQSRVGPVEWLKPYTDETIIKLG 201
++ + YKA+ EE +LI++++ K ++N Y+ ++ L Y +E++ K+
Sbjct: 181 DKQKNFINYYKAQREENPELIIDDIVKTYLSNEYS-------KEIDELNTYIEESLNKIT 233
Query: 202 QKG 204
Q
Sbjct: 234 QNS 236
>pdb|2BVM|A Chain A, Crystal Structure Of The Catalytic Domain Of Toxin B From
Clostridium Difficile In Complex With Udp, Glc And
Manganese Ion
Length = 542
Score = 28.1 bits (61), Expect = 7.8, Method: Compositional matrix adjust.
Identities = 26/123 (21%), Positives = 58/123 (47%), Gaps = 19/123 (15%)
Query: 85 IFREDEYLVN-MQHTVIPSWYQREGYITAMANLIEKELQNFDSPEQVMIFFSAHGVPLAY 143
+ + +L+N ++ TV+ S A+ + +E +N + P F + + Y
Sbjct: 130 FYDSNAFLINTLKKTVVES---------AINDTLESFRENLNDPRFDYNKFFRKRMEIIY 180
Query: 144 VEEAG--DPYKAEMEECVDLIMEELEKRKITNAYTLAYQSRVGPVEWLKPYTDETIIKLG 201
++ + YKA+ EE +LI++++ K ++N Y+ ++ L Y +E++ K+
Sbjct: 181 DKQKNFINYYKAQREENPELIIDDIVKTYLSNEYS-------KEIDELNTYIEESLNKIT 233
Query: 202 QKG 204
Q
Sbjct: 234 QNS 236
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.318 0.135 0.407
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 10,119,175
Number of Sequences: 62578
Number of extensions: 396023
Number of successful extensions: 1136
Number of sequences better than 100.0: 25
Number of HSP's better than 100.0 without gapping: 20
Number of HSP's successfully gapped in prelim test: 5
Number of HSP's that attempted gapping in prelim test: 1072
Number of HSP's gapped (non-prelim): 27
length of query: 355
length of database: 14,973,337
effective HSP length: 100
effective length of query: 255
effective length of database: 8,715,537
effective search space: 2222461935
effective search space used: 2222461935
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 52 (24.6 bits)