Query 018479
Match_columns 355
No_of_seqs 284 out of 1570
Neff 6.8
Searched_HMMs 46136
Date Fri Mar 29 09:22:06 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/018479.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/018479hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 PLN02449 ferrochelatase 100.0 2.3E-85 4.9E-90 658.4 35.7 337 2-347 149-485 (485)
2 COG0276 HemH Protoheme ferro-l 100.0 2.8E-75 6E-80 558.3 30.7 259 1-267 61-319 (320)
3 PRK12435 ferrochelatase; Provi 100.0 1.6E-73 3.4E-78 551.0 30.7 257 2-267 46-308 (311)
4 PF00762 Ferrochelatase: Ferro 100.0 4.1E-74 9E-79 556.6 25.1 259 2-266 58-316 (316)
5 TIGR00109 hemH ferrochelatase. 100.0 3.3E-71 7.1E-76 538.2 31.2 259 2-266 63-321 (322)
6 KOG1321 Protoheme ferro-lyase 100.0 3.9E-71 8.5E-76 517.1 24.4 295 2-327 95-394 (395)
7 PRK00035 hemH ferrochelatase; 100.0 2.6E-64 5.7E-69 492.1 32.3 263 2-269 63-326 (333)
8 cd00419 Ferrochelatase_C Ferro 100.0 1.3E-39 2.8E-44 279.3 16.1 135 111-249 1-135 (135)
9 cd03411 Ferrochelatase_N Ferro 99.9 3.6E-25 7.8E-30 195.0 11.1 103 2-106 57-159 (159)
10 PRK02395 hypothetical protein; 99.8 1.2E-18 2.6E-23 166.6 24.1 237 4-270 6-264 (279)
11 COG2138 Sirohydrochlorin ferro 99.6 1.1E-13 2.5E-18 129.8 18.1 232 4-267 7-241 (245)
12 PHA02337 putative high light i 99.5 9.1E-15 2E-19 94.7 3.6 33 314-346 1-33 (35)
13 cd03415 CbiX_CbiC Archaeal sir 99.4 5.6E-12 1.2E-16 106.8 12.0 110 4-119 5-124 (125)
14 PLN02757 sirohydrochlorine fer 99.4 1.6E-11 3.5E-16 107.7 14.1 116 4-124 18-135 (154)
15 cd03409 Chelatase_Class_II Cla 99.3 1.4E-11 3.1E-16 99.4 11.3 88 131-235 1-88 (101)
16 PRK00923 sirohydrochlorin coba 99.3 8.8E-12 1.9E-16 105.4 10.0 111 5-120 7-126 (126)
17 PLN02757 sirohydrochlorine fer 99.3 8.6E-11 1.9E-15 103.1 15.3 122 128-269 12-135 (154)
18 cd03414 CbiX_SirB_C Sirohydroc 99.3 8.3E-11 1.8E-15 97.9 12.4 110 5-120 6-116 (117)
19 PRK05782 bifunctional sirohydr 99.1 4.9E-10 1.1E-14 109.5 12.6 115 4-124 11-135 (335)
20 cd03409 Chelatase_Class_II Cla 99.1 3.9E-10 8.4E-15 91.0 9.6 76 5-85 5-86 (101)
21 cd03415 CbiX_CbiC Archaeal sir 99.1 2.1E-09 4.6E-14 91.1 13.6 115 130-264 1-124 (125)
22 cd03414 CbiX_SirB_C Sirohydroc 99.1 3.9E-09 8.4E-14 87.8 14.5 114 131-265 2-116 (117)
23 PF06180 CbiK: Cobalt chelatas 99.1 8.9E-09 1.9E-13 97.7 17.5 218 19-266 20-261 (262)
24 PRK00923 sirohydrochlorin coba 99.1 2.4E-09 5.1E-14 90.5 12.2 117 130-265 2-126 (126)
25 PF01903 CbiX: CbiX; InterPro 99.0 5.9E-10 1.3E-14 90.9 7.4 103 7-115 1-105 (105)
26 PLN00014 light-harvesting-like 99.0 1.5E-10 3.3E-15 105.3 3.7 41 311-352 156-196 (250)
27 PLN00084 photosystem II subuni 98.9 9.5E-10 2.1E-14 95.7 3.6 35 316-350 136-171 (214)
28 cd03412 CbiK_N Anaerobic cobal 98.9 2.9E-08 6.3E-13 84.3 12.4 108 5-119 6-125 (127)
29 PRK05782 bifunctional sirohydr 98.8 8.8E-08 1.9E-12 93.8 14.5 121 129-269 6-135 (335)
30 PF01903 CbiX: CbiX; InterPro 98.8 1.6E-08 3.4E-13 82.4 7.1 100 149-260 5-105 (105)
31 cd03416 CbiX_SirB_N Sirohydroc 98.7 7.5E-08 1.6E-12 78.0 9.3 96 4-104 4-101 (101)
32 cd03412 CbiK_N Anaerobic cobal 98.7 6.4E-07 1.4E-11 76.1 14.5 119 131-265 2-126 (127)
33 cd03416 CbiX_SirB_N Sirohydroc 98.6 4.8E-07 1E-11 73.2 11.8 100 132-249 2-101 (101)
34 PRK02395 hypothetical protein; 98.5 1.7E-06 3.6E-11 83.0 11.9 113 5-124 141-263 (279)
35 cd03413 CbiK_C Anaerobic cobal 98.4 8E-07 1.7E-11 72.9 6.6 70 5-82 6-76 (103)
36 COG4822 CbiK Cobalamin biosynt 98.3 0.00022 4.9E-09 65.2 20.0 194 47-270 63-261 (265)
37 PRK12435 ferrochelatase; Provi 98.2 1.8E-05 3.8E-10 77.2 13.3 114 146-269 50-167 (311)
38 PRK00035 hemH ferrochelatase; 98.2 3E-05 6.5E-10 76.1 13.4 110 148-267 69-181 (333)
39 PF00762 Ferrochelatase: Ferro 98.1 3.5E-05 7.6E-10 75.3 12.9 114 146-269 62-178 (316)
40 COG0276 HemH Protoheme ferro-l 98.1 5.4E-05 1.2E-09 73.7 12.9 112 147-270 67-181 (320)
41 COG2138 Sirohydrochlorin ferro 97.9 4E-05 8.6E-10 72.3 8.9 119 131-270 4-122 (245)
42 cd03413 CbiK_C Anaerobic cobal 97.9 8.5E-05 1.8E-09 60.9 9.5 88 131-240 2-94 (103)
43 TIGR00109 hemH ferrochelatase. 97.9 0.00012 2.7E-09 71.6 11.9 107 7-121 205-321 (322)
44 PLN02449 ferrochelatase 97.8 0.00025 5.4E-09 72.8 12.9 111 8-123 295-415 (485)
45 PF00504 Chloroa_b-bind: Chlor 97.6 3.8E-05 8.2E-10 67.3 2.2 29 309-337 127-155 (156)
46 PF06180 CbiK: Cobalt chelatas 97.5 0.00041 8.9E-09 66.1 8.7 107 5-122 147-262 (262)
47 PF00504 Chloroa_b-bind: Chlor 97.5 2.9E-05 6.3E-10 68.0 0.7 33 311-343 25-57 (156)
48 PLN00147 light-harvesting comp 97.2 0.00024 5.1E-09 67.0 3.5 33 317-349 202-234 (252)
49 PLN00100 light-harvesting comp 97.2 0.00019 4E-09 67.3 2.7 34 317-350 162-195 (246)
50 PLN00089 fucoxanthin-chlorophy 97.2 0.0003 6.5E-09 64.7 3.3 30 317-346 179-208 (209)
51 KOG1321 Protoheme ferro-lyase 97.1 0.0055 1.2E-07 59.2 10.8 118 146-271 99-222 (395)
52 PLN00099 light-harvesting comp 96.9 0.00059 1.3E-08 64.1 3.1 33 317-349 188-221 (243)
53 PLN00025 photosystem II light 96.9 0.00062 1.3E-08 64.6 2.9 33 317-349 208-240 (262)
54 PLN00120 fucoxanthin-chlorophy 96.9 0.00086 1.9E-08 61.5 3.6 26 317-342 170-195 (202)
55 PLN00048 photosystem I light h 96.9 0.00061 1.3E-08 64.7 2.6 32 316-347 86-117 (262)
56 cd03411 Ferrochelatase_N Ferro 96.9 0.011 2.3E-07 52.0 10.2 94 147-250 62-158 (159)
57 PLN00101 Photosystem I light-h 96.8 0.00053 1.2E-08 64.6 1.7 33 317-349 202-234 (250)
58 PLN00048 photosystem I light h 96.8 0.00078 1.7E-08 64.0 2.8 33 317-349 212-244 (262)
59 PLN00171 photosystem light-ha 96.7 0.0011 2.4E-08 64.4 3.3 32 318-349 276-307 (324)
60 PLN00097 photosystem I light h 96.7 0.00099 2.1E-08 62.5 2.9 33 317-349 199-231 (244)
61 PLN00098 light-harvesting comp 96.7 0.0011 2.4E-08 63.0 3.2 33 317-349 217-249 (267)
62 PLN00187 photosystem II light- 96.7 0.0013 2.7E-08 63.1 3.3 33 317-349 237-269 (286)
63 PLN00101 Photosystem I light-h 96.6 0.0012 2.6E-08 62.2 2.7 30 316-345 92-121 (250)
64 cd00419 Ferrochelatase_C Ferro 96.6 0.028 6.1E-07 48.2 10.7 85 12-102 40-133 (135)
65 PLN00098 light-harvesting comp 96.2 0.0032 6.9E-08 59.9 2.8 31 316-346 101-131 (267)
66 PLN00097 photosystem I light h 95.8 0.0056 1.2E-07 57.5 2.6 31 315-345 82-112 (244)
67 PLN00170 photosystem II light- 95.8 0.006 1.3E-07 57.7 2.7 32 315-346 95-126 (255)
68 PLN00025 photosystem II light 95.7 0.0067 1.5E-07 57.6 2.7 29 316-344 92-120 (262)
69 PLN00187 photosystem II light- 95.7 0.0046 1E-07 59.3 1.6 27 316-342 134-160 (286)
70 PLN00147 light-harvesting comp 95.6 0.0079 1.7E-07 56.8 2.6 29 316-344 84-112 (252)
71 PLN00170 photosystem II light- 95.4 0.0074 1.6E-07 57.0 1.8 34 316-350 222-255 (255)
72 PLN00171 photosystem light-ha 95.3 0.011 2.4E-07 57.5 2.7 30 316-345 149-178 (324)
73 COG4822 CbiK Cobalamin biosynt 95.3 0.31 6.7E-06 45.0 11.6 110 5-124 143-260 (265)
74 PLN00100 light-harvesting comp 94.3 0.026 5.6E-07 53.1 2.2 25 316-340 74-98 (246)
75 PLN00089 fucoxanthin-chlorophy 93.8 0.058 1.3E-06 49.8 3.4 28 316-343 76-103 (209)
76 PLN00099 light-harvesting comp 93.7 0.035 7.6E-07 52.3 1.9 28 314-341 81-108 (243)
77 PRK10481 hypothetical protein; 89.9 5.4 0.00012 37.2 11.7 127 34-222 67-200 (224)
78 COG0621 MiaB 2-methylthioadeni 89.5 1.9 4.1E-05 44.2 9.0 142 48-213 180-334 (437)
79 COG1453 Predicted oxidoreducta 88.7 9 0.00019 38.3 12.7 177 15-226 32-221 (391)
80 PLN00120 fucoxanthin-chlorophy 84.3 0.29 6.3E-06 44.9 -0.2 23 316-338 65-87 (202)
81 cd01994 Alpha_ANH_like_IV This 82.2 39 0.00084 30.6 13.3 86 95-211 59-144 (194)
82 CHL00200 trpA tryptophan synth 79.3 60 0.0013 31.0 14.7 139 31-212 90-232 (263)
83 TIGR00290 MJ0570_dom MJ0570-re 77.8 46 0.00099 31.0 12.0 121 52-211 19-141 (223)
84 PF04748 Polysacc_deac_2: Dive 74.2 73 0.0016 29.4 12.9 88 31-118 19-116 (213)
85 COG0528 PyrH Uridylate kinase 73.6 41 0.0009 31.7 10.4 118 101-228 21-152 (238)
86 PF01297 TroA: Periplasmic sol 69.0 98 0.0021 28.7 12.4 193 13-263 36-250 (256)
87 PF06309 Torsin: Torsin; Inte 67.6 19 0.00041 30.7 6.3 67 102-181 26-92 (127)
88 COG0406 phoE Broad specificity 64.8 91 0.002 27.8 10.7 122 8-144 26-160 (208)
89 PLN02591 tryptophan synthase 61.9 50 0.0011 31.3 8.7 91 153-262 64-154 (250)
90 cd00950 DHDPS Dihydrodipicolin 61.5 1.5E+02 0.0032 28.1 14.1 93 152-259 52-151 (284)
91 PRK04147 N-acetylneuraminate l 60.7 1.2E+02 0.0026 29.0 11.3 93 152-259 56-155 (293)
92 TIGR00262 trpA tryptophan synt 59.4 1.6E+02 0.0035 27.8 17.4 137 31-211 86-227 (256)
93 PF08645 PNK3P: Polynucleotide 59.3 29 0.00062 30.3 6.2 62 187-249 28-92 (159)
94 PF04273 DUF442: Putative phos 58.3 42 0.00092 27.6 6.6 67 190-263 14-83 (110)
95 COG4750 LicC CTP:phosphocholin 56.5 12 0.00026 34.4 3.2 50 4-68 7-56 (231)
96 TIGR03249 KdgD 5-dehydro-4-deo 56.4 1.7E+02 0.0037 28.0 11.6 93 152-260 57-153 (296)
97 TIGR01019 sucCoAalpha succinyl 54.8 25 0.00053 34.0 5.4 51 190-248 73-123 (286)
98 PF05990 DUF900: Alpha/beta hy 53.3 72 0.0016 29.6 8.2 134 112-261 3-149 (233)
99 PF13380 CoA_binding_2: CoA bi 51.0 22 0.00047 29.4 3.8 46 191-248 66-111 (116)
100 cd01020 TroA_b Metal binding p 51.0 2.1E+02 0.0046 26.8 11.1 140 101-263 95-257 (264)
101 cd07948 DRE_TIM_HCS Saccharomy 50.3 2.3E+02 0.005 26.9 15.8 149 43-220 71-227 (262)
102 cd00952 CHBPH_aldolase Trans-o 49.8 2.2E+02 0.0048 27.5 11.3 93 152-259 60-160 (309)
103 PF07302 AroM: AroM protein; 49.7 1.9E+02 0.0041 27.0 10.2 33 34-66 64-96 (221)
104 CHL00200 trpA tryptophan synth 49.6 91 0.002 29.7 8.3 93 152-263 76-168 (263)
105 PTZ00322 6-phosphofructo-2-kin 47.7 1.3E+02 0.0029 32.5 10.1 25 4-28 437-461 (664)
106 TIGR02990 ectoine_eutA ectoine 47.3 37 0.00081 31.9 5.2 55 187-251 103-157 (239)
107 COG0761 lytB 4-Hydroxy-3-methy 46.9 55 0.0012 31.8 6.3 65 98-165 34-113 (294)
108 PRK13111 trpA tryptophan synth 46.2 1.6E+02 0.0035 27.9 9.4 73 175-262 93-165 (258)
109 PRK05678 succinyl-CoA syntheta 46.1 39 0.00085 32.7 5.3 52 190-249 75-126 (291)
110 PRK07239 bifunctional uroporph 45.7 3.1E+02 0.0068 27.1 16.2 46 18-63 21-70 (381)
111 cd00954 NAL N-Acetylneuraminic 45.6 2.7E+02 0.0059 26.4 11.8 94 152-260 53-154 (288)
112 TIGR02717 AcCoA-syn-alpha acet 45.6 52 0.0011 33.8 6.4 56 191-248 75-130 (447)
113 PRK03906 mannonate dehydratase 45.5 39 0.00084 34.2 5.3 66 187-254 6-71 (385)
114 PRK13125 trpA tryptophan synth 45.3 2.3E+02 0.005 26.3 10.3 63 192-261 89-151 (244)
115 PF01902 ATP_bind_4: ATP-bindi 44.6 69 0.0015 29.7 6.5 50 148-211 92-141 (218)
116 PF02645 DegV: Uncharacterised 43.6 1.4E+02 0.003 28.4 8.6 61 42-110 61-124 (280)
117 TIGR02631 xylA_Arthro xylose i 43.0 50 0.0011 33.2 5.7 62 174-240 13-83 (382)
118 PRK05660 HemN family oxidoredu 42.4 3.6E+02 0.0078 26.8 16.3 114 107-240 37-158 (378)
119 TIGR00683 nanA N-acetylneurami 42.4 3.1E+02 0.0068 26.2 11.7 93 152-259 53-153 (290)
120 PRK12677 xylose isomerase; Pro 41.6 1.7E+02 0.0037 29.4 9.2 64 174-240 12-82 (384)
121 cd00951 KDGDH 5-dehydro-4-deox 41.2 1.2E+02 0.0026 29.0 7.9 66 192-260 79-148 (289)
122 TIGR00539 hemN_rel putative ox 41.1 3.6E+02 0.0078 26.5 17.1 127 107-253 30-167 (360)
123 PF06821 Ser_hydrolase: Serine 40.3 51 0.0011 29.1 4.7 63 62-139 2-64 (171)
124 COG1038 PycA Pyruvate carboxyl 40.3 60 0.0013 36.0 5.9 60 192-267 68-128 (1149)
125 cd06595 GH31_xylosidase_XylS-l 40.2 2.9E+02 0.0063 26.4 10.4 70 191-266 74-145 (292)
126 COG0159 TrpA Tryptophan syntha 39.5 3.1E+02 0.0066 26.4 10.1 93 152-262 78-170 (265)
127 PF00701 DHDPS: Dihydrodipicol 39.1 3.2E+02 0.007 25.8 10.4 94 152-260 53-153 (289)
128 TIGR03202 pucB xanthine dehydr 38.9 1.2E+02 0.0027 26.4 7.1 26 41-66 24-49 (190)
129 PRK09856 fructoselysine 3-epim 38.6 3.2E+02 0.007 25.2 16.1 157 40-210 9-178 (275)
130 PRK13463 phosphatase PhoE; Pro 38.4 2.8E+02 0.006 24.8 9.4 124 8-144 26-158 (203)
131 cd06335 PBP1_ABC_ligand_bindin 38.4 1.6E+02 0.0036 28.2 8.4 45 17-61 123-170 (347)
132 TIGR00695 uxuA mannonate dehyd 38.1 61 0.0013 32.9 5.4 66 187-254 6-71 (394)
133 PRK09545 znuA high-affinity zi 38.1 3.8E+02 0.0083 25.9 12.5 136 101-262 145-303 (311)
134 PRK06582 coproporphyrinogen II 37.9 67 0.0015 32.3 5.7 59 4-63 67-127 (390)
135 COG1509 KamA Lysine 2,3-aminom 37.3 4.5E+02 0.0097 26.5 11.3 104 147-264 166-278 (369)
136 cd03174 DRE_TIM_metallolyase D 36.8 3.4E+02 0.0073 24.9 16.4 99 96-221 132-234 (265)
137 TIGR00539 hemN_rel putative ox 36.7 81 0.0018 31.1 6.0 16 47-62 100-115 (360)
138 TIGR00262 trpA tryptophan synt 35.7 3.1E+02 0.0068 25.8 9.6 92 152-262 71-163 (256)
139 TIGR03470 HpnH hopanoid biosyn 35.3 1.9E+02 0.0041 28.1 8.2 45 26-70 158-204 (318)
140 cd06595 GH31_xylosidase_XylS-l 35.1 2.7E+02 0.0059 26.6 9.3 109 9-124 17-148 (292)
141 PF08915 tRNA-Thr_ED: Archaea- 34.4 1.5E+02 0.0033 25.6 6.5 21 201-221 68-88 (138)
142 PRK08898 coproporphyrinogen II 33.5 4.4E+02 0.0096 26.3 10.8 53 107-167 52-104 (394)
143 cd02072 Glm_B12_BD B12 binding 33.5 84 0.0018 26.7 4.7 55 7-61 55-112 (128)
144 TIGR00674 dapA dihydrodipicoli 33.4 4.2E+02 0.0092 25.1 14.6 94 152-260 50-150 (285)
145 PF08029 HisG_C: HisG, C-termi 33.3 38 0.00083 26.0 2.4 25 42-66 48-72 (75)
146 PRK08898 coproporphyrinogen II 33.2 68 0.0015 32.2 4.9 56 5-63 79-138 (394)
147 PRK04147 N-acetylneuraminate l 33.2 2.3E+02 0.005 27.1 8.4 52 32-87 73-127 (293)
148 cd02167 NMNAT_NadR Nicotinamid 32.8 3.3E+02 0.0072 23.6 9.9 95 40-139 7-110 (158)
149 PF08210 APOBEC_N: APOBEC-like 32.7 22 0.00047 32.2 1.1 95 9-120 83-186 (188)
150 PLN00125 Succinyl-CoA ligase [ 32.4 88 0.0019 30.5 5.3 52 190-248 79-130 (300)
151 PF13579 Glyco_trans_4_4: Glyc 32.4 1.9E+02 0.0041 23.2 6.8 24 190-214 137-160 (160)
152 PF13684 Dak1_2: Dihydroxyacet 32.4 69 0.0015 31.3 4.6 45 22-67 108-152 (313)
153 PRK14556 pyrH uridylate kinase 32.4 4.2E+02 0.0091 25.1 9.7 102 101-212 31-142 (249)
154 PF13204 DUF4038: Protein of u 32.3 2.4E+02 0.0053 27.0 8.4 87 46-141 90-189 (289)
155 cd06208 CYPOR_like_FNR These f 32.2 3.3E+02 0.0071 25.8 9.3 20 206-225 240-260 (286)
156 PRK03620 5-dehydro-4-deoxygluc 32.1 2.4E+02 0.0053 27.1 8.4 53 30-87 74-129 (303)
157 cd07939 DRE_TIM_NifV Streptomy 31.9 4.3E+02 0.0093 24.6 16.6 146 48-221 73-226 (259)
158 TIGR00762 DegV EDD domain prot 31.3 2.1E+02 0.0045 27.1 7.6 62 40-110 58-122 (275)
159 KOG2040 Glycine dehydrogenase 31.3 5.7E+02 0.012 28.1 11.2 96 97-204 600-710 (1001)
160 PRK13505 formate--tetrahydrofo 30.9 6.8E+02 0.015 26.7 13.4 135 46-220 361-499 (557)
161 cd00408 DHDPS-like Dihydrodipi 30.9 2.9E+02 0.0063 25.9 8.6 52 32-87 66-120 (281)
162 PF05378 Hydant_A_N: Hydantoin 30.8 89 0.0019 27.8 4.7 42 191-238 134-176 (176)
163 TIGR03822 AblA_like_2 lysine-2 30.8 5.1E+02 0.011 25.2 13.2 107 147-264 144-256 (321)
164 COG3545 Predicted esterase of 30.7 1.6E+02 0.0034 26.7 6.2 66 59-139 3-68 (181)
165 PF04914 DltD_C: DltD C-termin 30.6 1.3E+02 0.0027 25.7 5.4 49 192-240 37-91 (130)
166 PF08029 HisG_C: HisG, C-termi 30.6 52 0.0011 25.3 2.7 25 190-214 49-73 (75)
167 PRK08207 coproporphyrinogen II 30.4 1E+02 0.0022 32.1 5.8 59 5-63 224-285 (488)
168 PRK12360 4-hydroxy-3-methylbut 30.0 1.1E+02 0.0024 29.6 5.5 67 97-165 34-115 (281)
169 PTZ00397 macrophage migration 29.9 2E+02 0.0043 23.4 6.4 34 152-188 75-108 (116)
170 PRK09057 coproporphyrinogen II 29.9 85 0.0019 31.3 4.9 59 5-63 61-120 (380)
171 PRK03620 5-dehydro-4-deoxygluc 29.8 2.4E+02 0.0052 27.2 7.9 65 192-259 86-154 (303)
172 COG2099 CobK Precorrin-6x redu 29.6 2.8E+02 0.0061 26.5 8.0 81 98-210 47-133 (257)
173 PF03358 FMN_red: NADPH-depend 29.2 3E+02 0.0064 22.9 7.6 76 7-86 7-97 (152)
174 cd06592 GH31_glucosidase_KIAA1 28.8 1.6E+02 0.0034 28.4 6.5 102 152-266 29-151 (303)
175 KOG4132 Uroporphyrinogen III s 28.8 5.1E+02 0.011 24.5 10.2 193 20-265 44-254 (260)
176 TIGR00289 conserved hypothetic 28.6 4.8E+02 0.01 24.2 11.8 49 148-211 92-140 (222)
177 KOG0460 Mitochondrial translat 28.6 1.4E+02 0.003 30.1 5.9 84 152-240 121-206 (449)
178 TIGR03162 ribazole_cobC alpha- 28.5 2.4E+02 0.0053 24.1 7.1 124 8-144 21-152 (177)
179 PF00701 DHDPS: Dihydrodipicol 27.8 3.7E+02 0.008 25.4 8.8 54 30-87 68-124 (289)
180 PRK03170 dihydrodipicolinate s 27.1 5.4E+02 0.012 24.3 14.5 93 152-259 53-152 (292)
181 TIGR00696 wecB_tagA_cpsF bacte 27.0 4.5E+02 0.0098 23.4 9.7 76 46-141 37-112 (177)
182 cd01917 ACS_2 Acetyl-CoA synth 26.4 2.2E+02 0.0047 27.6 6.7 90 5-117 133-222 (287)
183 cd00952 CHBPH_aldolase Trans-o 26.3 2.6E+02 0.0055 27.1 7.4 55 29-87 74-131 (309)
184 cd03174 DRE_TIM_metallolyase D 26.3 3.4E+02 0.0075 24.8 8.1 44 23-66 121-168 (265)
185 COG0635 HemN Coproporphyrinoge 26.3 97 0.0021 31.5 4.6 58 4-61 92-151 (416)
186 cd06343 PBP1_ABC_ligand_bindin 26.2 3.6E+02 0.0077 25.8 8.5 20 40-59 155-174 (362)
187 PF13407 Peripla_BP_4: Peripla 26.2 2.9E+02 0.0063 24.8 7.5 57 148-214 9-65 (257)
188 cd06329 PBP1_SBP_like_3 Peripl 26.2 5.7E+02 0.012 24.3 10.0 16 44-59 188-203 (342)
189 PF13377 Peripla_BP_3: Peripla 26.1 2E+02 0.0044 23.7 6.0 41 197-240 1-41 (160)
190 cd00951 KDGDH 5-dehydro-4-deox 26.0 5.8E+02 0.012 24.3 10.1 52 31-87 68-122 (289)
191 COG2861 Uncharacterized protei 26.0 5.8E+02 0.013 24.3 14.5 38 32-69 52-89 (250)
192 PRK07313 phosphopantothenoylcy 25.8 84 0.0018 28.1 3.7 33 182-217 121-155 (182)
193 PRK13347 coproporphyrinogen II 25.7 1.3E+02 0.0027 30.9 5.4 59 5-63 109-168 (453)
194 PRK05628 coproporphyrinogen II 25.7 6.5E+02 0.014 24.8 16.8 116 106-240 35-159 (375)
195 PF13653 GDPD_2: Glycerophosph 25.6 56 0.0012 20.7 1.8 21 188-209 5-25 (30)
196 PRK05954 precorrin-8X methylmu 25.5 3E+02 0.0065 25.4 7.2 64 190-262 130-196 (203)
197 cd06349 PBP1_ABC_ligand_bindin 25.4 3.1E+02 0.0067 26.0 7.9 13 190-202 253-265 (340)
198 PRK10076 pyruvate formate lyas 25.3 4.7E+02 0.01 23.9 8.6 31 234-264 123-156 (213)
199 TIGR00674 dapA dihydrodipicoli 24.5 4.2E+02 0.009 25.1 8.4 52 32-87 67-121 (285)
200 KOG1322 GDP-mannose pyrophosph 24.4 3.1E+02 0.0067 27.4 7.4 76 35-124 35-110 (371)
201 TIGR03249 KdgD 5-dehydro-4-deo 24.2 4.3E+02 0.0092 25.3 8.5 52 31-87 73-127 (296)
202 TIGR03455 HisG_C-term ATP phos 24.2 72 0.0016 25.9 2.6 26 190-215 73-98 (100)
203 PRK09058 coproporphyrinogen II 24.2 1.5E+02 0.0032 30.4 5.5 56 4-63 119-179 (449)
204 TIGR01501 MthylAspMutase methy 24.1 1.4E+02 0.0031 25.5 4.6 21 40-60 63-83 (134)
205 PRK08208 coproporphyrinogen II 24.0 1.5E+02 0.0033 30.1 5.6 59 5-63 97-157 (430)
206 PF00300 His_Phos_1: Histidine 23.8 4E+02 0.0088 21.7 7.8 123 9-143 24-157 (158)
207 cd03145 GAT1_cyanophycinase Ty 23.8 4.5E+02 0.0097 23.9 8.2 49 206-259 30-82 (217)
208 PF11965 DUF3479: Domain of un 23.8 4.4E+02 0.0096 23.4 7.8 53 60-118 2-56 (164)
209 PTZ00393 protein tyrosine phos 23.7 3.5E+02 0.0077 25.6 7.5 60 192-265 104-166 (241)
210 PF02401 LYTB: LytB protein; 23.7 1E+02 0.0022 29.7 4.0 87 77-164 12-109 (281)
211 PRK05660 HemN family oxidoredu 23.7 1.7E+02 0.0037 29.2 5.8 57 4-63 63-123 (378)
212 PLN03116 ferredoxin--NADP+ red 23.6 5.3E+02 0.012 24.7 9.1 49 175-225 223-280 (307)
213 PRK05799 coproporphyrinogen II 23.6 1.5E+02 0.0033 29.2 5.4 58 4-63 56-115 (374)
214 PF08121 Toxin_33: Waglerin fa 23.5 36 0.00078 19.4 0.5 17 290-307 4-20 (22)
215 PRK15004 alpha-ribazole phosph 23.5 5.1E+02 0.011 22.8 9.1 42 8-55 24-67 (199)
216 PRK07379 coproporphyrinogen II 23.4 1.4E+02 0.003 30.1 5.1 59 5-63 72-131 (400)
217 TIGR03455 HisG_C-term ATP phos 23.3 88 0.0019 25.3 3.0 24 43-66 73-96 (100)
218 TIGR02313 HpaI-NOT-DapA 2,4-di 23.3 6.6E+02 0.014 24.0 10.0 54 31-88 68-124 (294)
219 PTZ00242 protein tyrosine phos 22.9 2.8E+02 0.0061 24.3 6.4 66 186-266 23-91 (166)
220 PRK08599 coproporphyrinogen II 22.7 7.4E+02 0.016 24.4 16.7 136 107-263 31-177 (377)
221 COG1312 UxuA D-mannonate dehyd 22.7 1.1E+02 0.0024 30.4 4.1 65 188-254 7-71 (362)
222 cd00945 Aldolase_Class_I Class 22.6 4.8E+02 0.01 22.3 7.9 62 198-262 72-138 (201)
223 COG1213 Predicted sugar nucleo 22.5 79 0.0017 29.8 2.9 32 191-222 32-63 (239)
224 COG1625 Fe-S oxidoreductase, r 22.4 2.7E+02 0.0059 28.4 6.8 115 132-256 139-265 (414)
225 COG3473 Maleate cis-trans isom 22.3 2.2E+02 0.0047 26.7 5.6 51 191-252 105-156 (238)
226 PLN02673 quinolinate synthetas 22.2 6.1E+02 0.013 27.9 9.6 18 203-220 315-332 (724)
227 PRK09249 coproporphyrinogen II 22.2 1.7E+02 0.0036 30.0 5.5 58 5-63 108-167 (453)
228 PRK06294 coproporphyrinogen II 22.2 1.7E+02 0.0037 29.1 5.4 54 5-63 64-119 (370)
229 cd06348 PBP1_ABC_ligand_bindin 21.9 2.8E+02 0.0061 26.4 6.8 15 224-238 281-295 (344)
230 PRK05628 coproporphyrinogen II 21.9 1.5E+02 0.0034 29.3 5.1 56 4-63 64-124 (375)
231 cd06331 PBP1_AmiC_like Type I 21.9 5.2E+02 0.011 24.4 8.7 20 48-68 150-170 (333)
232 cd00408 DHDPS-like Dihydrodipi 21.9 6.6E+02 0.014 23.4 14.8 94 152-260 49-149 (281)
233 PLN02417 dihydrodipicolinate s 21.6 6.9E+02 0.015 23.6 11.2 66 190-259 79-150 (280)
234 PRK06740 histidinol-phosphatas 21.6 5.4E+02 0.012 25.2 8.8 42 13-63 36-80 (331)
235 PRK13371 4-hydroxy-3-methylbut 21.6 3.1E+02 0.0067 27.8 7.1 37 129-165 110-156 (387)
236 PF04198 Sugar-bind: Putative 21.6 1.3E+02 0.0028 28.4 4.2 68 190-259 61-130 (255)
237 cd06600 GH31_MGAM-like This fa 21.6 3.6E+02 0.0079 26.1 7.5 108 152-266 23-146 (317)
238 PF13407 Peripla_BP_4: Peripla 21.3 2.3E+02 0.0049 25.5 5.8 54 14-68 12-66 (257)
239 KOG2170 ATPase of the AAA+ sup 21.0 2.1E+02 0.0046 28.3 5.5 55 99-166 80-134 (344)
240 COG2082 CobH Precorrin isomera 20.8 5.6E+02 0.012 23.7 8.0 67 190-265 137-206 (210)
241 cd06360 PBP1_alkylbenzenes_lik 20.8 4.9E+02 0.011 24.3 8.2 15 16-30 119-133 (336)
242 COG0329 DapA Dihydrodipicolina 20.7 7.6E+02 0.017 23.7 14.5 94 152-260 56-156 (299)
243 TIGR00216 ispH_lytB (E)-4-hydr 20.6 3.1E+02 0.0066 26.5 6.6 69 97-165 32-112 (280)
244 cd00860 ThrRS_anticodon ThrRS 20.6 3.6E+02 0.0079 20.0 6.4 49 13-65 11-59 (91)
245 TIGR02313 HpaI-NOT-DapA 2,4-di 20.5 7.5E+02 0.016 23.6 11.7 68 190-260 78-153 (294)
246 TIGR02650 RNase_Z_T_toga ribon 20.3 2.5E+02 0.0054 27.1 5.9 30 41-70 219-248 (277)
247 PRK05904 coproporphyrinogen II 20.3 2.5E+02 0.0053 27.8 6.1 58 5-63 62-119 (353)
248 COG0474 MgtA Cation transport 20.2 1.4E+02 0.0031 33.6 4.8 52 176-239 535-586 (917)
No 1
>PLN02449 ferrochelatase
Probab=100.00 E-value=2.3e-85 Score=658.40 Aligned_cols=337 Identities=83% Similarity=1.268 Sum_probs=306.5
Q ss_pred cccccCCCchhHHHHHHHHHHHHHHhccCCCceEEEeeecCCCCHHHHHHHHHHcCCCEEEEeecCccccccchHHHHHH
Q 018479 2 YFCFVLVLSLAIISCIQAEELRKSLWEKNLPAKVYVGMRYWHPFTEEAIEQIKRDGITKLVVLPLYPQFSISTSGSSLRL 81 (355)
Q Consensus 2 y~~igggSPL~~~t~~qa~~l~~~L~~~~~~~~V~~amry~~P~i~~~l~~l~~~G~~~IvvlPlyPqyS~~ttgs~~~~ 81 (355)
|++|||||||+++|++|+++|++.|++.+.+++|++|||||+|+|+|++++|+++|+++||++|||||||.+|+||+++.
T Consensus 149 Y~~IGGgSPL~~iT~~Qa~~Lq~~L~~~~~~~~V~~aMRY~~P~iedal~~l~~~G~~~iVvLPLYPQyS~sTtgSs~~~ 228 (485)
T PLN02449 149 YASIGGGSPLRKITDEQAEALAKALEAKNLPAKVYVGMRYWHPFTEEAIDQIKADGITKLVVLPLYPQFSISTSGSSLRL 228 (485)
T ss_pred HHHCCCCCchHHHHHHHHHHHHHHHhccCCCeEEEEhhhcCCCCHHHHHHHHHhcCCCeEEEEECCcccccccHHHHHHH
Confidence 89999999999999999999999998877789999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHhccccCCceeEEecCCCCChHHHHHHHHHHHHHHHhCCCCCceEEEEeeCCCchhhhcccCCchHHHHHHHHHH
Q 018479 82 LESIFREDEYLVNMQHTVIPSWYQREGYITAMANLIEKELQNFDSPEQVMIFFSAHGVPLAYVEEAGDPYKAEMEECVDL 161 (355)
Q Consensus 82 ~~e~~~~~~~~~~~~~~~i~~~~~~p~yi~a~~~~I~~~l~~~~~~~~~~llfsaHgiP~~~v~~~GDpY~~~~~~ta~~ 161 (355)
+.+..+.......+++++|++|++||+||+|++++|++++++.+.+++++|||||||+|+++++++||||+.||++|+++
T Consensus 229 l~~~~~~~~~~~~~~~~~I~~~~~~p~yI~A~a~~I~~~l~~~~~~~~~~LlFSAHGlP~~~v~~~GDpY~~q~~~ta~l 308 (485)
T PLN02449 229 LESIFREDEYLVNMQHTVIPSWYQREGYVKAMADLIKKELAKFSDPEEVHIFFSAHGVPVSYVEEAGDPYKAQMEECVDL 308 (485)
T ss_pred HHHHHhhcccccCCeeEEeccccCChHHHHHHHHHHHHHHHhccCcCCcEEEEecCCChhhhhhhcCCChHHHHHHHHHH
Confidence 98887654332356789999999999999999999999998875566789999999999999966799999999999999
Q ss_pred HHHHhcccccCCceeEEEEecccCCCCCCCcHHHHHHHHHhcCCceEEEEcceecccchhhHHHHHHHHHHHHHhcCCce
Q 018479 162 IMEELEKRKITNAYTLAYQSRVGPVEWLKPYTDETIIKLGQKGVKSLLAVPISFVSEHIETLEEIDVEYKELALKSGIEK 241 (355)
Q Consensus 162 v~e~l~~~~~~~~~~l~fQS~~G~~~Wl~P~~~d~l~~L~~~G~k~VvVvP~gFvsD~lETl~eid~e~~e~a~~~G~~~ 241 (355)
|+++|+.++..++|.++||||+||.+||+|+|+|+|++|+++|+|+|+||||||++||+|||||||+|++++|+++|+.+
T Consensus 309 I~~~L~~~~~~~~~~layQSR~Gp~eWL~P~t~d~L~~L~~~Gvk~VlvvPigFvSDhiETL~EiDiE~re~a~e~G~~~ 388 (485)
T PLN02449 309 IMEELKARGILNRHTLAYQSRVGPVEWLKPYTDETIVELGKKGVKSLLAVPISFVSEHIETLEEIDMEYRELALESGIEN 388 (485)
T ss_pred HHHHhCCCCCCCCeEEEEeCCCCCCCCCCCCHHHHHHHHHHcCCCeEEEECCcccccchHHHHHHHHHHHHHHHHcCCce
Confidence 99999875433469999999999999999999999999999999999999999999999999999999999999999989
Q ss_pred EEEcCCCCCCHHHHHHHHHHHHHhCCCCCcccccccchhcccccCchhhhhhhchhhhhccCCCCCCcccCCCcchhhhh
Q 018479 242 WGRVPALGCEATFISDLADAVIESLPYVGAMAVSNLEARQSLVPLGSVEELLATYDSKRNELPPPVTVWEWGWTRSAETW 321 (355)
Q Consensus 242 ~~rv~~ln~~p~fi~~La~~V~e~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~g~~~~~e~~ 321 (355)
|.|+||||+||.||++|+++|.+++...+.+..+....+..+...+.|++...+|+.-++.++ |.+.|.||+|+
T Consensus 389 ~~rVP~LN~~p~FI~~La~lV~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~----- 462 (485)
T PLN02449 389 WGRVPALGCEPTFISDLADAVIEALPYVGAMAVSNLEARQSLVPLGSVEELLATYDSQRRELP-PVAVWEWGWTK----- 462 (485)
T ss_pred EEEcCCCCCCHHHHHHHHHHHHHHhhcccccccccCCCcccchhhcchHHHHhhhhhccccCC-Cchhhhhcccc-----
Confidence 999999999999999999999999876554444444444455667778888888888888888 99999999997
Q ss_pred hhHHHHHHHHHHHHHHHHhCcchhhh
Q 018479 322 NGRAAMLAVLVLLVLEVTTGEGFLHQ 347 (355)
Q Consensus 322 ngr~am~g~~~~~~~e~~~g~~~~~~ 347 (355)
+||+||++++..|++||+|.+++
T Consensus 463 ---~~~~~~~~~~~~~~~~~~~~~~~ 485 (485)
T PLN02449 463 ---AAMLAVLLLLVLEVTSGFGNLHQ 485 (485)
T ss_pred ---hHHHHHHHHHHHHHHcCCCcCCC
Confidence 99999999999999999999864
No 2
>COG0276 HemH Protoheme ferro-lyase (ferrochelatase) [Coenzyme metabolism]
Probab=100.00 E-value=2.8e-75 Score=558.29 Aligned_cols=259 Identities=43% Similarity=0.706 Sum_probs=244.8
Q ss_pred CcccccCCCchhHHHHHHHHHHHHHHhccCCCceEEEeeecCCCCHHHHHHHHHHcCCCEEEEeecCccccccchHHHHH
Q 018479 1 MYFCFVLVLSLAIISCIQAEELRKSLWEKNLPAKVYVGMRYWHPFTEEAIEQIKRDGITKLVVLPLYPQFSISTSGSSLR 80 (355)
Q Consensus 1 ~y~~igggSPL~~~t~~qa~~l~~~L~~~~~~~~V~~amry~~P~i~~~l~~l~~~G~~~IvvlPlyPqyS~~ttgs~~~ 80 (355)
.|.+|||+|||+.+|++|+++|+++|+ ..+++|++|||||+|+|++++++|+++|+++||++|||||||++|||++.+
T Consensus 61 ~Y~~igg~sPL~~~T~~q~~~L~~~L~--~~~~~V~~amry~~P~i~~~v~~l~~~gv~~iv~~pLyPqyS~sTt~s~~~ 138 (320)
T COG0276 61 NYESIGGKSPLNVITRAQAAALEERLD--LPDFKVYLAMRYGPPFIEEAVEELKKDGVERIVVLPLYPQYSSSTTGSYVD 138 (320)
T ss_pred HHHHhcCCCccHHHHHHHHHHHHHHhC--CCCccEEEeecCCCCcHHHHHHHHHHcCCCeEEEEECCcccccccHHHHHH
Confidence 389999999999999999999999998 348999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHhccccCCceeEEecCCCCChHHHHHHHHHHHHHHHhCCCCCceEEEEeeCCCchhhhcccCCchHHHHHHHHH
Q 018479 81 LLESIFREDEYLVNMQHTVIPSWYQREGYITAMANLIEKELQNFDSPEQVMIFFSAHGVPLAYVEEAGDPYKAEMEECVD 160 (355)
Q Consensus 81 ~~~e~~~~~~~~~~~~~~~i~~~~~~p~yi~a~~~~I~~~l~~~~~~~~~~llfsaHgiP~~~v~~~GDpY~~~~~~ta~ 160 (355)
++.+++++.+ ..+++++|++|++||.||++|+++|++.+++++ .++.+|||||||+|++++ +.||||.+||++|++
T Consensus 139 ~~~~al~~~~--~~~~i~~I~~~~~~p~yI~a~a~~I~~~~~~~~-~~~~~llfSaHglP~~~~-~~GDpY~~q~~~t~~ 214 (320)
T COG0276 139 ELARALKELR--GQPKISTIPDYYDEPLYIEALADSIREKLAKHP-RDDDVLLFSAHGLPKRYI-DEGDPYPQQCQETTR 214 (320)
T ss_pred HHHHHHHhcC--CCCceEEecCccCChHHHHHHHHHHHHHHHhcC-CCCeEEEEecCCCchhhh-hcCCchHHHHHHHHH
Confidence 9999887655 446899999999999999999999999999886 467899999999999999 679999999999999
Q ss_pred HHHHHhcccccCCceeEEEEecccCCCCCCCcHHHHHHHHHhcCCceEEEEcceecccchhhHHHHHHHHHHHHHhcCCc
Q 018479 161 LIMEELEKRKITNAYTLAYQSRVGPVEWLKPYTDETIIKLGQKGVKSLLAVPISFVSEHIETLEEIDVEYKELALKSGIE 240 (355)
Q Consensus 161 ~v~e~l~~~~~~~~~~l~fQS~~G~~~Wl~P~~~d~l~~L~~~G~k~VvVvP~gFvsD~lETl~eid~e~~e~a~~~G~~ 240 (355)
+|+++||... .+|.++|||++||++||+|+|+|++++|.++|+|+|+||||||++||+|||+|||.|+++.+++.|+.
T Consensus 215 li~e~lg~~~--~~~~~~~QS~~G~~~WL~P~t~~~l~~L~~~g~k~iiv~pigFvsDhlETL~Eid~e~~e~~~~~Gg~ 292 (320)
T COG0276 215 LIAEALGLPE--EEYDLTFQSRFGPEPWLQPYTDDLLEELGEKGVKKIIVVPIGFVSDHLETLYEIDHEYRELAEEAGGK 292 (320)
T ss_pred HHHHHcCCCc--hheeEEeecCCCCCCCCCCCHHHHHHHHHhcCCCeEEEECCchhhhhHHHHHHHHHHHHHHHHHhCCc
Confidence 9999998632 36999999999999999999999999999999999999999999999999999999999999999988
Q ss_pred eEEEcCCCCCCHHHHHHHHHHHHHhCC
Q 018479 241 KWGRVPALGCEATFISDLADAVIESLP 267 (355)
Q Consensus 241 ~~~rv~~ln~~p~fi~~La~~V~e~l~ 267 (355)
+|+|+|||||||.||++|+++|++.+.
T Consensus 293 ~y~rip~lN~~p~fi~~la~lv~~~~~ 319 (320)
T COG0276 293 KYVRIPCLNDSPEFIDALADLVRELLN 319 (320)
T ss_pred cEEecCCCCCCHHHHHHHHHHHHHHhc
Confidence 999999999999999999999998764
No 3
>PRK12435 ferrochelatase; Provisional
Probab=100.00 E-value=1.6e-73 Score=550.99 Aligned_cols=257 Identities=32% Similarity=0.494 Sum_probs=237.6
Q ss_pred cccccCCCchhHHHHHHHHHHHHHHhcc--CCCceEEEeeecCCCCHHHHHHHHHHcCCCEEEEeecCccccccchHHHH
Q 018479 2 YFCFVLVLSLAIISCIQAEELRKSLWEK--NLPAKVYVGMRYWHPFTEEAIEQIKRDGITKLVVLPLYPQFSISTSGSSL 79 (355)
Q Consensus 2 y~~igggSPL~~~t~~qa~~l~~~L~~~--~~~~~V~~amry~~P~i~~~l~~l~~~G~~~IvvlPlyPqyS~~ttgs~~ 79 (355)
|++|||+|||+.+|++|+++|+++|++. +.+++|++|||||+|+|+|++++|+++|+++|++||||||||.+|+||+.
T Consensus 46 Y~~iGG~SPL~~~T~~qa~~L~~~L~~~~~~~~~~V~~amry~~P~i~~~l~~l~~~g~~~iv~lpLyPqyS~~Tt~s~~ 125 (311)
T PRK12435 46 YEAIGGISPLAKITDEQAKALEKALNEVQDEVEFKLYLGLKHIEPFIEDAVEQMHNDGIEEAISIVLAPHYSTFSVKSYN 125 (311)
T ss_pred HHHhCCcChHHHHHHHHHHHHHHHHhhccCCCCceEEEEecCCCCCHHHHHHHHHHcCCCeEEEEECCCccccccHHHHH
Confidence 8999999999999999999999999864 45799999999999999999999999999999999999999999999998
Q ss_pred HHHHHHHHhccccCCceeEEecCCCCChHHHHHHHHHHHHHHHhCCC--CCceEEEEeeCCCchhhhcccCCchHHHHHH
Q 018479 80 RLLESIFREDEYLVNMQHTVIPSWYQREGYITAMANLIEKELQNFDS--PEQVMIFFSAHGVPLAYVEEAGDPYKAEMEE 157 (355)
Q Consensus 80 ~~~~e~~~~~~~~~~~~~~~i~~~~~~p~yi~a~~~~I~~~l~~~~~--~~~~~llfsaHgiP~~~v~~~GDpY~~~~~~ 157 (355)
+.+.+..+. .+.+++++|++|++||.||+|++++|++++++.+. +++++|||||||+|++++ ++||||++||++
T Consensus 126 ~~~~~~~~~---~~~~~~~~i~~~~~~p~yi~a~a~~I~~~l~~~~~~~~~~~~llfSaHslP~~~i-~~GDpY~~q~~~ 201 (311)
T PRK12435 126 KRAKEEAEK---LGGPTITSIESWYDEPKFIQYWADQIKETFAQIPEEEREKAVLIVSAHSLPEKII-AAGDPYPDQLEE 201 (311)
T ss_pred HHHHHHhcc---cCCCeEEEeCCccCChHHHHHHHHHHHHHHHHcCcccccceEEEEecCCCchhHh-hCCCCHHHHHHH
Confidence 877665432 23457899999999999999999999999987642 256799999999999999 799999999999
Q ss_pred HHHHHHHHhcccccCCceeEEEEecc-cCCCCCCCcHHHHHHHHHhc-CCceEEEEcceecccchhhHHHHHHHHHHHHH
Q 018479 158 CVDLIMEELEKRKITNAYTLAYQSRV-GPVEWLKPYTDETIIKLGQK-GVKSLLAVPISFVSEHIETLEEIDVEYKELAL 235 (355)
Q Consensus 158 ta~~v~e~l~~~~~~~~~~l~fQS~~-G~~~Wl~P~~~d~l~~L~~~-G~k~VvVvP~gFvsD~lETl~eid~e~~e~a~ 235 (355)
|+++|+++++.. +|.++||||+ ||.+||+|+|+|+|++|+++ |+|+|+|+||||++||+|||||||+|+++.|+
T Consensus 202 t~~~v~~~l~~~----~~~l~yQSr~~g~~~WL~P~t~d~l~~l~~~~G~k~v~vvpigFvsDhlETl~Eldie~~e~a~ 277 (311)
T PRK12435 202 TADLIAEQANVE----HYAIGWQSEGNTPDPWLGPDVQDLTRDLYEEHGYKSFIYTPVGFVAEHLEVLYDNDYECKVVTD 277 (311)
T ss_pred HHHHHHHHcCCC----CCeEeeecCCCCCCCCCCCCHHHHHHHHHHhcCCceEEEECCchhhhhHHHHHHHHHHHHHHHH
Confidence 999999999764 4999999996 79999999999999999988 99999999999999999999999999999999
Q ss_pred hcCCceEEEcCCCCCCHHHHHHHHHHHHHhCC
Q 018479 236 KSGIEKWGRVPALGCEATFISDLADAVIESLP 267 (355)
Q Consensus 236 ~~G~~~~~rv~~ln~~p~fi~~La~~V~e~l~ 267 (355)
++|+. |.|+||||+||.||++|+++|.++++
T Consensus 278 ~~G~~-~~r~~~lN~~p~fi~~La~lv~~~~~ 308 (311)
T PRK12435 278 EIGAK-YYRPEMPNADPLFIDALADVVLKKLK 308 (311)
T ss_pred HcCCc-EEeccCCCCCHHHHHHHHHHHHHHHh
Confidence 99996 99999999999999999999998764
No 4
>PF00762 Ferrochelatase: Ferrochelatase; InterPro: IPR001015 Synonym(s): Protohaem ferro-lyase, Iron chelatase, etc. Ferrochelatase catalyses the last step in haem biosynthesis: the chelation of a ferrous ion to proto-porphyrin IX, to form protohaem [, ]. In eukaryotic cells, it binds to the mitochondrial inner membrane with its active site on the matrix side of the membrane. The X-ray structure of Bacillus subtilis and human ferrochelatase have been solved [, ]. The human enzyme exists as a homodimer. Each subunit contains one [2Fe-2S] cluster. The monomer is folded into two similar domains, each with a four-stranded parallel beta-sheet flanked by an alpha-helix in a beta-alpha-beta motif that is reminiscent of the fold found in the periplasmic binding proteins. The topological similarity between the domains suggests that they have arisen from a gene duplication event. However, significant differences exist between the two domains, including an N-terminal section (residues 80-130) that forms part of the active site pocket, and a C-terminal extension (residues 390-423) that is involved in coordination of the [2Fe-2S] cluster and in stabilisation of the homodimer. Ferrochelatase seems to have a structurally conserved core region that is common to the enzyme from bacteria, plants and mammals. Porphyrin binds in the identified cleft; this cleft also includes the metal-binding site of the enzyme. It is likely that the structure of the cleft region will have different conformations upon substrate binding and release [].; GO: 0004325 ferrochelatase activity, 0006783 heme biosynthetic process; PDB: 2QD3_B 2HRE_C 3HCN_B 2PNJ_A 2QD1_C 1HRK_A 2QD4_B 3AQI_B 2HRC_B 3HCO_B ....
Probab=100.00 E-value=4.1e-74 Score=556.64 Aligned_cols=259 Identities=44% Similarity=0.691 Sum_probs=224.9
Q ss_pred cccccCCCchhHHHHHHHHHHHHHHhccCCCceEEEeeecCCCCHHHHHHHHHHcCCCEEEEeecCccccccchHHHHHH
Q 018479 2 YFCFVLVLSLAIISCIQAEELRKSLWEKNLPAKVYVGMRYWHPFTEEAIEQIKRDGITKLVVLPLYPQFSISTSGSSLRL 81 (355)
Q Consensus 2 y~~igggSPL~~~t~~qa~~l~~~L~~~~~~~~V~~amry~~P~i~~~l~~l~~~G~~~IvvlPlyPqyS~~ttgs~~~~ 81 (355)
|++|||+|||+.+|++|+++|++.|++++.+++|++|||||+|+|++++++|+++|+++|+++|||||||.+||||+++.
T Consensus 58 Y~~ig~~SPL~~~t~~qa~~l~~~L~~~~~~~~V~~amry~~P~i~~~l~~l~~~g~~~ivvlPLyPqyS~~ttgs~~~~ 137 (316)
T PF00762_consen 58 YQKIGGGSPLNEITRRQAEALQQRLDERGVDVEVYYAMRYGPPSIEDALEELKADGVDRIVVLPLYPQYSSSTTGSYLDE 137 (316)
T ss_dssp HHHTTSSCCHHHHHHHHHHHHHHHHHHH-EEEEEEEEESSSSSBHHHHHHHHHHTT-SEEEEEESSSS--TTTHHHHHHH
T ss_pred HHHcCCCCchHHHHHHHHHHHHHHHHhcCCCeeEEEEeccCCCCHHHHHHHHHHcCCCeEEEEeCCCchhHhhHHHHHHH
Confidence 89999999999999999999999999877789999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHhccccCCceeEEecCCCCChHHHHHHHHHHHHHHHhCCCCCceEEEEeeCCCchhhhcccCCchHHHHHHHHHH
Q 018479 82 LESIFREDEYLVNMQHTVIPSWYQREGYITAMANLIEKELQNFDSPEQVMIFFSAHGVPLAYVEEAGDPYKAEMEECVDL 161 (355)
Q Consensus 82 ~~e~~~~~~~~~~~~~~~i~~~~~~p~yi~a~~~~I~~~l~~~~~~~~~~llfsaHgiP~~~v~~~GDpY~~~~~~ta~~ 161 (355)
+.+++++.. +.+++++|++|++||.||++++++|++++++.+.++.++|||||||+|.++++++||||..||++|+++
T Consensus 138 ~~~~~~~~~--~~~~~~~i~~~~~~p~yi~a~~~~i~~~l~~~~~~~~~~llfSaHglP~~~~~~~GdpY~~~~~~t~~~ 215 (316)
T PF00762_consen 138 VERALKKSR--PNPKVRFIPSFYDHPAYIEALAERIREALERFPRGEPDHLLFSAHGLPQRYVEDKGDPYPAQCEETARL 215 (316)
T ss_dssp HHHHHHHTH--SSSEEEEE---TT-HHHHHHHHHHHHHHHTTS-HCCCEEEEEEEE--BHHHHTCCT-SHHHHHHHHHHH
T ss_pred HHHHHHhcC--CCCeEEEeCCccCCHHHHHHHHHHHHHHHHhcCCCCCCEEEEccCCCCccccccCCCChHHHHHHHHHH
Confidence 999886533 456899999999999999999999999999874333579999999999999944799999999999999
Q ss_pred HHHHhcccccCCceeEEEEecccCCCCCCCcHHHHHHHHHhcCCceEEEEcceecccchhhHHHHHHHHHHHHHhcCCce
Q 018479 162 IMEELEKRKITNAYTLAYQSRVGPVEWLKPYTDETIIKLGQKGVKSLLAVPISFVSEHIETLEEIDVEYKELALKSGIEK 241 (355)
Q Consensus 162 v~e~l~~~~~~~~~~l~fQS~~G~~~Wl~P~~~d~l~~L~~~G~k~VvVvP~gFvsD~lETl~eid~e~~e~a~~~G~~~ 241 (355)
|+++++.. +|.++||||+|+.+||+|+|+|+|++|+++|+|+|+|+||||++||+|||||||+|+++.|+++|+.+
T Consensus 216 i~~~l~~~----~~~~~fQS~~g~~~WL~P~~~~~l~~l~~~G~~~V~v~p~gFv~D~lETl~eidie~re~~~~~G~~~ 291 (316)
T PF00762_consen 216 IAERLGLP----EWRLAFQSRFGPGEWLGPSTEDVLEELAKEGVKRVVVVPPGFVSDCLETLYEIDIEYRELAEEAGGEE 291 (316)
T ss_dssp HHHHTTTS----SEEEEEES-SSSS-BSSSBHHHHHHHHHHCT-SEEEEEETT-SSSSHHHHCCCCCHHHHHHHHHTCCE
T ss_pred HHHHcCCC----ceEEEEECCCCCCCCccccHHHHHHHHHhcCCCeEEEECCccccccHhHHHHHHHHHHHHHHHcCCce
Confidence 99999764 39999999999999999999999999999999999999999999999999999999999999999989
Q ss_pred EEEcCCCCCCHHHHHHHHHHHHHhC
Q 018479 242 WGRVPALGCEATFISDLADAVIESL 266 (355)
Q Consensus 242 ~~rv~~ln~~p~fi~~La~~V~e~l 266 (355)
|.|+|||||||.|+++|+++|.++|
T Consensus 292 ~~~ip~lN~~~~fi~~La~~v~~~~ 316 (316)
T PF00762_consen 292 FVRIPCLNDSPEFIEALADLVREHL 316 (316)
T ss_dssp EEE---STT-HHHHHHHHHHHHHHH
T ss_pred EEEeCCCCCCHHHHHHHHHHHHhCc
Confidence 9999999999999999999999864
No 5
>TIGR00109 hemH ferrochelatase. Human ferrochelatase, found at the mitochondrial inner membrane inner surface, was shown in an active recombinant form to be a homodimer. This contrasts to an earlier finding by gel filtration that overexpressed E. coli ferrochelatase runs as a monomer.
Probab=100.00 E-value=3.3e-71 Score=538.18 Aligned_cols=259 Identities=45% Similarity=0.749 Sum_probs=241.7
Q ss_pred cccccCCCchhHHHHHHHHHHHHHHhccCCCceEEEeeecCCCCHHHHHHHHHHcCCCEEEEeecCccccccchHHHHHH
Q 018479 2 YFCFVLVLSLAIISCIQAEELRKSLWEKNLPAKVYVGMRYWHPFTEEAIEQIKRDGITKLVVLPLYPQFSISTSGSSLRL 81 (355)
Q Consensus 2 y~~igggSPL~~~t~~qa~~l~~~L~~~~~~~~V~~amry~~P~i~~~l~~l~~~G~~~IvvlPlyPqyS~~ttgs~~~~ 81 (355)
|++|||+|||+++|++|+++|++.|.+. .+++|++|||||+|+|++++++|+++|+++|+++|||||||.+|+||++++
T Consensus 63 Y~~igg~SPl~~~t~~q~~~l~~~l~~~-~~~~V~~amry~~P~i~~~l~~l~~~G~~~iv~lPL~PqyS~~t~gs~~~~ 141 (322)
T TIGR00109 63 YEAIGGGSPLLQITEQQAHALEKRLPNE-IDFKVYIAMRYGEPFTEEAVKELLKDGVERAVVLPLYPHFSSSTTGSSFNE 141 (322)
T ss_pred HHHhCCCCcHHHHHHHHHHHHHHHhccC-CCceEEEeeccCCCCHHHHHHHHHhcCCCeEEEEeCCcccccccHHHHHHH
Confidence 8999999999999999999999999754 579999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHhccccCCceeEEecCCCCChHHHHHHHHHHHHHHHhCCCCCceEEEEeeCCCchhhhcccCCchHHHHHHHHHH
Q 018479 82 LESIFREDEYLVNMQHTVIPSWYQREGYITAMANLIEKELQNFDSPEQVMIFFSAHGVPLAYVEEAGDPYKAEMEECVDL 161 (355)
Q Consensus 82 ~~e~~~~~~~~~~~~~~~i~~~~~~p~yi~a~~~~I~~~l~~~~~~~~~~llfsaHgiP~~~v~~~GDpY~~~~~~ta~~ 161 (355)
+.+++.+.... .+++++|++|++||.||+|++++|++++++.+.++++.|||||||+|++++ ++||||..||.+|+++
T Consensus 142 ~~~~l~~~~~~-~~~~~~i~~~~~~p~yi~a~~~~I~~~l~~~~~~~~~~llfSaHglP~~~~-~~Gd~Y~~~~~~ta~~ 219 (322)
T TIGR00109 142 LAEALKKLRSL-RPTISVIESWYDNPKYIKALADSIKETLASFPEPDNAVLLFSAHGLPQSYV-DEGDPYPAECEATTRL 219 (322)
T ss_pred HHHHHHhcccC-CCeEEEeCccccCcHHHHHHHHHHHHHHHhcCCcCCcEEEEeCCCCchhHh-hCCCChHHHHHHHHHH
Confidence 99888654321 147899999999999999999999999987754566789999999999999 7999999999999999
Q ss_pred HHHHhcccccCCceeEEEEecccCCCCCCCcHHHHHHHHHhcCCceEEEEcceecccchhhHHHHHHHHHHHHHhcCCce
Q 018479 162 IMEELEKRKITNAYTLAYQSRVGPVEWLKPYTDETIIKLGQKGVKSLLAVPISFVSEHIETLEEIDVEYKELALKSGIEK 241 (355)
Q Consensus 162 v~e~l~~~~~~~~~~l~fQS~~G~~~Wl~P~~~d~l~~L~~~G~k~VvVvP~gFvsD~lETl~eid~e~~e~a~~~G~~~ 241 (355)
|+++++.. .+|.+||||++||.+||+|+|+++|++|+++|+|+|+|+||||++||+|||||||+|+++.+++.|+.+
T Consensus 220 l~~~l~~~---~~~~~~fQS~~g~~~Wl~P~~~~~l~~l~~~G~k~V~vvP~gFv~D~lETl~ei~~e~~~~~~~~G~~~ 296 (322)
T TIGR00109 220 IAEKLGFP---NEYRLTWQSRVGPEPWLGPYTEELLEKLGEQGVQHIVVVPIGFTADHLETLYEIDEEYREVAEDAGGDK 296 (322)
T ss_pred HHHHcCCC---CCeEEEEeCCCCCCCcCCCCHHHHHHHHHHcCCceEEEECCcccccchhHHHhhhHHHHHHHHHcCCCe
Confidence 99999732 369999999999999999999999999999999999999999999999999999999999999999988
Q ss_pred EEEcCCCCCCHHHHHHHHHHHHHhC
Q 018479 242 WGRVPALGCEATFISDLADAVIESL 266 (355)
Q Consensus 242 ~~rv~~ln~~p~fi~~La~~V~e~l 266 (355)
|.|+|||||||.|+++|+++|.+++
T Consensus 297 ~~~vp~lN~~p~fi~~l~~~v~~~~ 321 (322)
T TIGR00109 297 YQRCPALNAKPEFIEAMATLVKKKL 321 (322)
T ss_pred EEECCCCCCCHHHHHHHHHHHHHhh
Confidence 9999999999999999999999864
No 6
>KOG1321 consensus Protoheme ferro-lyase (ferrochelatase) [Coenzyme transport and metabolism]
Probab=100.00 E-value=3.9e-71 Score=517.05 Aligned_cols=295 Identities=52% Similarity=0.763 Sum_probs=270.4
Q ss_pred cccccCCCchhHHHHHHHHHHHHHHhccC---CCceEEEeeecCCCCHHHHHHHHHHcCCCEEEEeecCccccccchHHH
Q 018479 2 YFCFVLVLSLAIISCIQAEELRKSLWEKN---LPAKVYVGMRYWHPFTEEAIEQIKRDGITKLVVLPLYPQFSISTSGSS 78 (355)
Q Consensus 2 y~~igggSPL~~~t~~qa~~l~~~L~~~~---~~~~V~~amry~~P~i~~~l~~l~~~G~~~IvvlPlyPqyS~~ttgs~ 78 (355)
|..|||||||+.+|+.|++.+.+.|++.. .+..+|+|||||+|+.++++++|+++|++|+|++|+|||||++|+||+
T Consensus 95 Y~~IGGGSPir~wT~~Q~~~m~k~Ld~~~petaphk~YVgfRY~~PlTEea~~qikkd~v~r~VafsqYPQyS~sTsGSS 174 (395)
T KOG1321|consen 95 YREIGGGSPIRKWTEYQAEEMCKILDKKCPETAPHKPYVGFRYAHPLTEEALEQIKKDGVTRAVAFSQYPQYSCSTSGSS 174 (395)
T ss_pred HHhccCCCchhHHHHHHHHHHHHHHHhcCcccCCccceeeeeecCcccHHHHHHHHhcCceeEEeeccCCceeeecCccc
Confidence 88999999999999999999999998864 568999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHhccccCCceeEEecCCCCChHHHHHHHHHHHHHHHhCCCC--CceEEEEeeCCCchhhhcccCCchHHHHH
Q 018479 79 LRLLESIFREDEYLVNMQHTVIPSWYQREGYITAMANLIEKELQNFDSP--EQVMIFFSAHGVPLAYVEEAGDPYKAEME 156 (355)
Q Consensus 79 ~~~~~e~~~~~~~~~~~~~~~i~~~~~~p~yi~a~~~~I~~~l~~~~~~--~~~~llfsaHgiP~~~v~~~GDpY~~~~~ 156 (355)
++.+.+.+++....++++++.|++|+.|++||++++++|++.|+.++.+ +++.++|||||+|+++| .+||||+.+++
T Consensus 175 ln~l~r~~r~~~~~~~~~wsiIdrW~t~~glIkafA~~I~keL~~F~~~~r~~VVIlFSAHslPms~V-n~GDpY~~Ei~ 253 (395)
T KOG1321|consen 175 LNELWRQFREDGYERDIKWSIIDRWPTREGLIKAFAENIEKELQTFPEPVRDDVVILFSAHSLPMSVV-NAGDPYPAEIA 253 (395)
T ss_pred HHHHHHHHHhcCcccCCceEeeccccccchHHHHHHHHHHHHHHhcCCcccccEEEEEecCCCcHHHH-hcCCCcHHHHH
Confidence 9999998887776678999999999999999999999999999999765 88999999999999999 69999999999
Q ss_pred HHHHHHHHHhcccccCCceeEEEEecccCCCCCCCcHHHHHHHHHhcCCceEEEEcceecccchhhHHHHHHHHHHHHHh
Q 018479 157 ECVDLIMEELEKRKITNAYTLAYQSRVGPVEWLKPYTDETIIKLGQKGVKSLLAVPISFVSEHIETLEEIDVEYKELALK 236 (355)
Q Consensus 157 ~ta~~v~e~l~~~~~~~~~~l~fQS~~G~~~Wl~P~~~d~l~~L~~~G~k~VvVvP~gFvsD~lETl~eid~e~~e~a~~ 236 (355)
+|+.+|+++|+.. +++.++|||++||.+||+|.|+++++.|.++|.|+++.|||+|++||+|||+|||+||++.+.+
T Consensus 254 atv~~iMeeL~~~---N~y~lawQSkVGP~pWL~p~Tde~i~~lgk~g~knll~VPIaFvSeHIETL~EiD~ey~e~a~k 330 (395)
T KOG1321|consen 254 ATVDLIMEELKYK---NPYRLAWQSKVGPLPWLGPATDEVIEGLGKKGVKNLLLVPIAFVSEHIETLHEIDIEYIEEALK 330 (395)
T ss_pred HHHHHHHHHhccC---CcchhhhhcccCCccccccchHHHHHHHHhhcccceEEEeehhhhHHHHHHHHhhHHHHHHHHH
Confidence 9999999999765 5799999999999999999999999999999999999999999999999999999999999999
Q ss_pred cCCceEEEcCCCCCCHHHHHHHHHHHHHhCCCCCcccccccchhcccccCchhhhhhhchhhhhccCCCCCCcccCCCcc
Q 018479 237 SGIEKWGRVPALGCEATFISDLADAVIESLPYVGAMAVSNLEARQSLVPLGSVEELLATYDSKRNELPPPVTVWEWGWTR 316 (355)
Q Consensus 237 ~G~~~~~rv~~ln~~p~fi~~La~~V~e~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~g~~~ 316 (355)
.|++++.|+++||.+|.||++|||+|.++|........+.. ...+.|.+.. .+
T Consensus 331 ~gve~~~Rv~sln~~p~fI~~lADlV~ehL~s~~~~s~q~l----------------~~~~~~~ne~-----------~~ 383 (395)
T KOG1321|consen 331 KGVENWKRVESLNGNPTFIEGLADLVAEHLKSNQAYSNQFL----------------ARCPGCSNEP-----------CK 383 (395)
T ss_pred HhhhhheeccCCCCCccHHHHHHHHHHHhhhhhhhcchhhh----------------hhCcCcCChh-----------hh
Confidence 99999999999999999999999999999997766543221 2223454422 34
Q ss_pred hhhhhhhHHHH
Q 018479 317 SAETWNGRAAM 327 (355)
Q Consensus 317 ~~e~~ngr~am 327 (355)
.++.|+|+++|
T Consensus 384 e~~s~~~~~~~ 394 (395)
T KOG1321|consen 384 EAKSWFGNHES 394 (395)
T ss_pred HHHHHHHHhhc
Confidence 78999999876
No 7
>PRK00035 hemH ferrochelatase; Reviewed
Probab=100.00 E-value=2.6e-64 Score=492.11 Aligned_cols=263 Identities=43% Similarity=0.714 Sum_probs=244.7
Q ss_pred cccccCCCchhHHHHHHHHHHHHHHhccCCCceEEEeeecCCCCHHHHHHHHHHcCCCEEEEeecCccccccchHHHHHH
Q 018479 2 YFCFVLVLSLAIISCIQAEELRKSLWEKNLPAKVYVGMRYWHPFTEEAIEQIKRDGITKLVVLPLYPQFSISTSGSSLRL 81 (355)
Q Consensus 2 y~~igggSPL~~~t~~qa~~l~~~L~~~~~~~~V~~amry~~P~i~~~l~~l~~~G~~~IvvlPlyPqyS~~ttgs~~~~ 81 (355)
|+.|||||||+.+|++|+++|++.|++.+.+++|++||+||+|++++++++|+++|+++|+++|||||||.+|+||+.++
T Consensus 63 Y~~ig~gSPl~~~t~~q~~~L~~~l~~~~~~~~V~~am~y~~P~i~eal~~l~~~G~~~IivlPL~p~~s~~t~gs~~~~ 142 (333)
T PRK00035 63 YASIGGGSPLNVITRRQAEALQAELAARGPDLPVYLGMRYWNPSIEEALEALKADGVDRIVVLPLYPQYSYSTTASYFED 142 (333)
T ss_pred HHHcCCCChhHHHHHHHHHHHHHHHhccCCCceEEEeecCCCCCHHHHHHHHHhcCCCEEEEEECCCccccccHHHHHHH
Confidence 89999999999999999999999998777789999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHhccccCCceeEEecCCCCChHHHHHHHHHHHHHHHhCCCC-CceEEEEeeCCCchhhhcccCCchHHHHHHHHH
Q 018479 82 LESIFREDEYLVNMQHTVIPSWYQREGYITAMANLIEKELQNFDSP-EQVMIFFSAHGVPLAYVEEAGDPYKAEMEECVD 160 (355)
Q Consensus 82 ~~e~~~~~~~~~~~~~~~i~~~~~~p~yi~a~~~~I~~~l~~~~~~-~~~~llfsaHgiP~~~v~~~GDpY~~~~~~ta~ 160 (355)
+.+.++... ..++++++++|++||.|+++++++|++++++.+.+ ++++|||||||+|.+++ .+||||..+|.+|++
T Consensus 143 i~~~~~~~~--~~~~i~~i~~~~~~p~~i~~l~~~I~~~~~~~~~~~~~~~llfs~HG~P~~~~-~~gd~Y~~~~~~t~~ 219 (333)
T PRK00035 143 LARALAKLR--LQPEIRFIRSYYDHPGYIEALAESIREALAKHGEDPEPDRLLFSAHGLPQRYI-DKGDPYQQQCEETAR 219 (333)
T ss_pred HHHHHHhcC--CCCcEEEeCCccCCHHHHHHHHHHHHHHHHhcCcccCCcEEEEecCCCchHHh-hcCCChHHHHHHHHH
Confidence 988876543 24689999999999999999999999999776433 45789999999999998 799999999999999
Q ss_pred HHHHHhcccccCCceeEEEEecccCCCCCCCcHHHHHHHHHhcCCceEEEEcceecccchhhHHHHHHHHHHHHHhcCCc
Q 018479 161 LIMEELEKRKITNAYTLAYQSRVGPVEWLKPYTDETIIKLGQKGVKSLLAVPISFVSEHIETLEEIDVEYKELALKSGIE 240 (355)
Q Consensus 161 ~v~e~l~~~~~~~~~~l~fQS~~G~~~Wl~P~~~d~l~~L~~~G~k~VvVvP~gFvsD~lETl~eid~e~~e~a~~~G~~ 240 (355)
+|+++++.. ..+|.+||||++|+.+||+|+++++|++|+++|+|+|+|+|+||++||+||++|||+++++.+++.|+.
T Consensus 220 ~l~~~l~~~--~~~~~~~fqs~~g~~~Wl~P~~~~~l~~l~~~g~k~V~v~P~~Fv~D~lEtl~ei~~e~~~~~~~~G~~ 297 (333)
T PRK00035 220 LLAEALGLP--DEDYDLTYQSRFGPEPWLEPYTDDTLEELAEKGVKKVVVVPPGFVSDHLETLEEIDIEYREIAEEAGGE 297 (333)
T ss_pred HHHHHhCCC--CCCeEEEeeCCCCCCccCCCCHHHHHHHHHHcCCCeEEEECCeeeccchhHHHHHHHHHHHHHHHcCCc
Confidence 999999752 125999999999999999999999999999999999999999999999999999999999999999998
Q ss_pred eEEEcCCCCCCHHHHHHHHHHHHHhCCCC
Q 018479 241 KWGRVPALGCEATFISDLADAVIESLPYV 269 (355)
Q Consensus 241 ~~~rv~~ln~~p~fi~~La~~V~e~l~~~ 269 (355)
.|.|+||||+||.|+++|+++|++.+.+.
T Consensus 298 ~~~~~~~ln~~~~~i~~l~~~v~~~~~~~ 326 (333)
T PRK00035 298 EFRRIPCLNDSPEFIEALADLVRENLQGW 326 (333)
T ss_pred eEEECCCCCCCHHHHHHHHHHHHHHhcCC
Confidence 89999999999999999999999976544
No 8
>cd00419 Ferrochelatase_C Ferrochelatase, C-terminal domain: Ferrochelatase (protoheme ferrolyase or HemH) is the terminal enzyme of the heme biosynthetic pathway. It catalyzes the insertion of ferrous iron into the protoporphyrin IX ring yielding protoheme. This enzyme is ubiquitous in nature and widely distributed in bacteria and eukaryotes. Recently, some archaeal members have been identified. The oligomeric state of these enzymes varies depending on the presence of a dimerization motif at the C-terminus.
Probab=100.00 E-value=1.3e-39 Score=279.32 Aligned_cols=135 Identities=46% Similarity=0.803 Sum_probs=125.4
Q ss_pred HHHHHHHHHHHHhCCCCCceEEEEeeCCCchhhhcccCCchHHHHHHHHHHHHHHhcccccCCceeEEEEecccCCCCCC
Q 018479 111 TAMANLIEKELQNFDSPEQVMIFFSAHGVPLAYVEEAGDPYKAEMEECVDLIMEELEKRKITNAYTLAYQSRVGPVEWLK 190 (355)
Q Consensus 111 ~a~~~~I~~~l~~~~~~~~~~llfsaHgiP~~~v~~~GDpY~~~~~~ta~~v~e~l~~~~~~~~~~l~fQS~~G~~~Wl~ 190 (355)
++++++|++++++.. ++.++|||||||+|.+++ ++||||..||.+++++|+++++... .+|.++||||+||.+||+
T Consensus 1 ~a~~~~I~~~~~~~~-~~~~~llfsaHgiP~~~~-~~gd~Y~~~~~~~~~~v~~~l~~~~--~~~~~~fqS~~g~~~Wl~ 76 (135)
T cd00419 1 EALADHIREALAELP-REKDRLLFSAHGLPVRDI-KKGDPYPDQCEETARLVAERLGLPF--DEYELAYQSRFGPGEWLE 76 (135)
T ss_pred ChHHHHHHHHHHhcC-CCCCEEEEEcCCCHHHHh-hCCCCHHHHHHHHHHHHHHHhCCCC--CCEEEEecCCCCCCCCCC
Confidence 478999999998764 456789999999999999 7899999999999999999997421 359999999999999999
Q ss_pred CcHHHHHHHHHhcCCceEEEEcceecccchhhHHHHHHHHHHHHHhcCCceEEEcCCCC
Q 018479 191 PYTDETIIKLGQKGVKSLLAVPISFVSEHIETLEEIDVEYKELALKSGIEKWGRVPALG 249 (355)
Q Consensus 191 P~~~d~l~~L~~~G~k~VvVvP~gFvsD~lETl~eid~e~~e~a~~~G~~~~~rv~~ln 249 (355)
|+++|+|++|.++|+++|+|+|+||++||+||++|||+|+++.+++.|+.+|.|+||||
T Consensus 77 P~~~~~l~~l~~~G~~~i~v~p~gF~~D~~Etl~di~~e~~~~~~~~G~~~~~rvp~lN 135 (135)
T cd00419 77 PSTDDALEELAKEGVKNVVVVPIGFVSDHLETLYELDIEYRELAEEAGGENYRRVPCLN 135 (135)
T ss_pred CCHHHHHHHHHHcCCCeEEEECCccccccHHHHHHHHHHHHHHHHHcCCceEEEcCCCC
Confidence 99999999999999999999999999999999999999999999999988899999998
No 9
>cd03411 Ferrochelatase_N Ferrochelatase, N-terminal domain: Ferrochelatase (protoheme ferrolyase or HemH) is the terminal enzyme of the heme biosynthetic pathway. It catalyzes the insertion of ferrous iron into the protoporphyrin IX ring yielding protoheme. This enzyme is ubiquitous in nature and widely distributed in bacteria and eukaryotes. Recently, some archaeal members have been identified. The oligomeric state of these enzymes varies depending on the presence of a dimerization motif at the C-terminus.
Probab=99.92 E-value=3.6e-25 Score=194.96 Aligned_cols=103 Identities=42% Similarity=0.574 Sum_probs=94.9
Q ss_pred cccccCCCchhHHHHHHHHHHHHHHhccCCCceEEEeeecCCCCHHHHHHHHHHcCCCEEEEeecCccccccchHHHHHH
Q 018479 2 YFCFVLVLSLAIISCIQAEELRKSLWEKNLPAKVYVGMRYWHPFTEEAIEQIKRDGITKLVVLPLYPQFSISTSGSSLRL 81 (355)
Q Consensus 2 y~~igggSPL~~~t~~qa~~l~~~L~~~~~~~~V~~amry~~P~i~~~l~~l~~~G~~~IvvlPlyPqyS~~ttgs~~~~ 81 (355)
|++|||||||+.+|++|+++|++.|++.+.++.|++|||||+|+|+|++++|+++|+++|+++|||||||.+||||+++.
T Consensus 57 Y~~ig~~SPL~~~t~~q~~~l~~~L~~~~~~~~v~~amry~~P~i~~~l~~l~~~g~~~iivlPl~P~~S~~Tt~s~~~~ 136 (159)
T cd03411 57 YKKIGGGSPLNEITRAQAEALEKALDERGIDVKVYLAMRYGPPSIEEALEELKADGVDRIVVLPLYPQYSASTTGSYLDE 136 (159)
T ss_pred HHHcCCCCccHHHHHHHHHHHHHHHhccCCCcEEEehHhcCCCCHHHHHHHHHHcCCCEEEEEECCcccccccHHHHHHH
Confidence 89999999999999999999999998766679999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHhccccCCceeEEecCCCCC
Q 018479 82 LESIFREDEYLVNMQHTVIPSWYQR 106 (355)
Q Consensus 82 ~~e~~~~~~~~~~~~~~~i~~~~~~ 106 (355)
+.+.+++... ..++++|++|++|
T Consensus 137 ~~~~~~~~~~--~~~~~~i~~~~~~ 159 (159)
T cd03411 137 VERALKKLRP--APELRVIRSFYDH 159 (159)
T ss_pred HHHHHHhcCC--CCcEEEeCccccC
Confidence 9888865432 3478999999986
No 10
>PRK02395 hypothetical protein; Provisional
Probab=99.83 E-value=1.2e-18 Score=166.64 Aligned_cols=237 Identities=12% Similarity=0.046 Sum_probs=175.5
Q ss_pred cccCCCchhHHHHHHHHHHHHHHhccCCCceEEEeeecCCCCHHHHHHHHHHcCCCEEEEeecCccccccchHHHHHHHH
Q 018479 4 CFVLVLSLAIISCIQAEELRKSLWEKNLPAKVYVGMRYWHPFTEEAIEQIKRDGITKLVVLPLYPQFSISTSGSSLRLLE 83 (355)
Q Consensus 4 ~igggSPL~~~t~~qa~~l~~~L~~~~~~~~V~~amry~~P~i~~~l~~l~~~G~~~IvvlPlyPqyS~~ttgs~~~~~~ 83 (355)
-+||||+......+..+.+.+.|.+++..-.|..||--.+|+++++++++. .++|+|+|+|. +..+|..++++
T Consensus 6 lvgHGSrr~~~~~~~~~~la~~l~~~~~~~~v~~~fle~~P~l~~~l~~l~---~~~ivVvPlfL----~~G~Hv~~DIP 78 (279)
T PRK02395 6 LVGHGSHLNPDSALPTYAHAETIRARGLFDEVREGFWKEEPSLRQVLRTVE---SDEVYVVPLFI----SEGYFTEQVIP 78 (279)
T ss_pred EEeCCCCCCcchHHHHHHHHHHHHhcCCCCeEEEeeccCCCCHHHHHHhcC---cCcEEEEeeEe----ccccchhhhhH
Confidence 379999866666666777888887665444677775339999999999986 68999999996 35667788998
Q ss_pred HHHHhc-----cccC------CceeEEecCCCCChHHHHHHHHHHHHHHHhCCCCCceEEEEeeCCCchhhhcccCCc-h
Q 018479 84 SIFRED-----EYLV------NMQHTVIPSWYQREGYITAMANLIEKELQNFDSPEQVMIFFSAHGVPLAYVEEAGDP-Y 151 (355)
Q Consensus 84 e~~~~~-----~~~~------~~~~~~i~~~~~~p~yi~a~~~~I~~~l~~~~~~~~~~llfsaHgiP~~~v~~~GDp-Y 151 (355)
+.+... ..++ ++++.+.++++.||.+++++.++++++......+++..||+.+||++. ++ -
T Consensus 79 ~~l~~~~~~~~~~~~~~~~~~~~~i~~~~plG~~p~l~~~l~~ri~e~~~~~~~~~~~alvlvgHGS~~-------~~~a 151 (279)
T PRK02395 79 RELGLGHDGPVADRGTLRALDGKTVHYTGPVGTHPAMADVIAARARSVTGDPDVGEDTALAVVGHGTER-------NENS 151 (279)
T ss_pred HHhcCCcCCccccccccccCCCceEEeCCCCCCChHHHHHHHHHHHHhhcCCCCCcCceEEEEecCCCC-------chhH
Confidence 887531 1123 678999999999999999999999998765332356689999999941 22 3
Q ss_pred HHHHHHHHHHHHHHhcccccCCceeEEEEecccCCCCCCCcHHHHHHHHHhcCCceEEEEcce-ecccchhhHHHHHHHH
Q 018479 152 KAEMEECVDLIMEELEKRKITNAYTLAYQSRVGPVEWLKPYTDETIIKLGQKGVKSLLAVPIS-FVSEHIETLEEIDVEY 230 (355)
Q Consensus 152 ~~~~~~ta~~v~e~l~~~~~~~~~~l~fQS~~G~~~Wl~P~~~d~l~~L~~~G~k~VvVvP~g-FvsD~lETl~eid~e~ 230 (355)
...+.+.++.++++.+.. .+.+||... +|+++++++++. .++|+|+|+- |..+|. ..||+.+.
T Consensus 152 ~~~~~~~a~~l~~~~~~~----~V~~~fle~-------~P~l~~~l~~l~---~~~V~vvP~fL~~G~H~--~~DIp~~~ 215 (279)
T PRK02395 152 AKAIYYHADRLRERGRFA----EVEALFLDE-------EPEVDDWPDLFE---ADDVVVVPLFIADGFHT--QEDIPEDM 215 (279)
T ss_pred HHHHHHHHHHHHhhCCCC----eEEEEeccC-------CCCHHHHHHHhC---CCeEEEEeeecccCcch--HhHHHHHH
Confidence 566777888887764432 488999852 699999998874 4899999974 455555 44555554
Q ss_pred HHHHH-----hcC----CceEEEcCCCCCCHHHHHHHHHHHHHhCCCCC
Q 018479 231 KELAL-----KSG----IEKWGRVPALGCEATFISDLADAVIESLPYVG 270 (355)
Q Consensus 231 ~e~a~-----~~G----~~~~~rv~~ln~~p~fi~~La~~V~e~l~~~~ 270 (355)
..... ... ..++.+.+.|+.||.+++.+++++.+.+...+
T Consensus 216 ~~~~~~~~g~~~~~~~~~~~i~~~~~LG~~p~l~~i~~~R~~ea~~~~~ 264 (279)
T PRK02395 216 GLTDDYRTGYDVPTAVDGHRIWYAGAVGTEPLMADVILERAADAGADVG 264 (279)
T ss_pred HHhhccccccCCCcccCCeeEEEecCCCCCHHHHHHHHHHHHHhhcCcc
Confidence 33311 111 23689999999999999999999998866443
No 11
>COG2138 Sirohydrochlorin ferrochelatase [Inorganic ion transport and metabolism]
Probab=99.58 E-value=1.1e-13 Score=129.77 Aligned_cols=232 Identities=15% Similarity=0.147 Sum_probs=165.5
Q ss_pred cccCCCchhHHHHHHHHHHHHHHhccCCCceEEEe-eecCCCCHHHHHHHHHHcCCCEEEEeecCccccccchHHHHHHH
Q 018479 4 CFVLVLSLAIISCIQAEELRKSLWEKNLPAKVYVG-MRYWHPFTEEAIEQIKRDGITKLVVLPLYPQFSISTSGSSLRLL 82 (355)
Q Consensus 4 ~igggSPL~~~t~~qa~~l~~~L~~~~~~~~V~~a-mry~~P~i~~~l~~l~~~G~~~IvvlPlyPqyS~~ttgs~~~~~ 82 (355)
-+||||++....+.. +.+.+.+.+++....|..+ +.+.+|+++++++.|..+|+++|+++|+|.. ...|.++++
T Consensus 7 lvgHGsr~p~~~~~~-~~~a~~~~~~~~~~~v~~~f~e~~~P~l~~~~~al~~~G~~~ivvVPlfl~----~g~H~~~DI 81 (245)
T COG2138 7 LVGHGSRLPRGREVA-EAIAARLEERGDFPPVRVAFLELAEPSLREALQALVARGVDRIVVVPLFLA----AGYHTKRDI 81 (245)
T ss_pred eeecCCCCccHHHHH-HHHHHHHHhhcCCccchhHHHHhcCCCHHHHHHHHHhcCCCeEEEeehhhc----cCchhhccc
Confidence 378999999997764 4455577776654556666 6999999999999999999999999999964 777999999
Q ss_pred HHHHHhc-cccCCceeEEecCCCCChHHHHHHHHHHHHHHHhCCCCCceEEEEeeCCCchhhhcccCCc-hHHHHHHHHH
Q 018479 83 ESIFRED-EYLVNMQHTVIPSWYQREGYITAMANLIEKELQNFDSPEQVMIFFSAHGVPLAYVEEAGDP-YKAEMEECVD 160 (355)
Q Consensus 83 ~e~~~~~-~~~~~~~~~~i~~~~~~p~yi~a~~~~I~~~l~~~~~~~~~~llfsaHgiP~~~v~~~GDp-Y~~~~~~ta~ 160 (355)
++.+... ..++...+. +++.||...+.+.+++.+....... +-..+++..||. .|+ -+..+..+++
T Consensus 82 P~~L~~~~~~~~~~~~~---p~G~~~~~~~~~~~r~~~~~~~~~~-~~~~vv~~~~Gs--------~~~~~~~~~~~va~ 149 (245)
T COG2138 82 PAELGLARQAHPQVDLS---PLGTHPAVLDLLGQRLEDAGADEAD-DAERVVLEPRGS--------SDPIANAAVYRVAR 149 (245)
T ss_pred HHHHHHhhhcCCccccc---ccCCchHHHHHHHHHHHHhcccccc-ccceEEEeccCC--------CcccchhHHHHHHH
Confidence 8887543 344544333 9999999999999999988765431 112377777665 222 2556677777
Q ss_pred HHHHHhcccccCCceeEEEEecccCCCCCCCcHHHHHHHHHhcCCceEEEEcceecccchhhHHHHHHHHHHHHHhcCCc
Q 018479 161 LIMEELEKRKITNAYTLAYQSRVGPVEWLKPYTDETIIKLGQKGVKSLLAVPISFVSEHIETLEEIDVEYKELALKSGIE 240 (355)
Q Consensus 161 ~v~e~l~~~~~~~~~~l~fQS~~G~~~Wl~P~~~d~l~~L~~~G~k~VvVvP~gFvsD~lETl~eid~e~~e~a~~~G~~ 240 (355)
.+.+..... .....+|... .+|.+.+...++. .++++|+|+ |+.|.+.|.+.+.... .....+..
T Consensus 150 ~l~~~~~~~---~~~~~~~~~~------~~~~l~~~~~~~~---~~~~vv~P~-fL~~G~l~~~~~~~~~--~~~~~~~~ 214 (245)
T COG2138 150 LLGEGTASW---KAVITLFTGV------AEPGLAGETARLR---YRRVVVLPY-FLFDGLLTDRIRPEVE--LRLAVPEG 214 (245)
T ss_pred HHHhccCCc---eeeeeeeccc------cCcchhhhhhhcc---cCcEEEEEh-hHhCchhhhhhHHhhh--hhhccCCc
Confidence 777654211 1244555432 3688888877776 689999995 5555555555444333 33333444
Q ss_pred eEEEcCCCCCCHHHHHHHHHHHHHhCC
Q 018479 241 KWGRVPALGCEATFISDLADAVIESLP 267 (355)
Q Consensus 241 ~~~rv~~ln~~p~fi~~La~~V~e~l~ 267 (355)
.+.+.+.+|.+|...+++.+++.+...
T Consensus 215 ~i~~~~~lG~~p~l~~~~~~r~~~~~~ 241 (245)
T COG2138 215 EIALARPLGTHPRLADAVLDRVREARA 241 (245)
T ss_pred ceEecCcCCCCHHHHHHHHHHHHHHHh
Confidence 688999999999999999999987654
No 12
>PHA02337 putative high light inducible protein
Probab=99.52 E-value=9.1e-15 Score=94.70 Aligned_cols=33 Identities=30% Similarity=0.295 Sum_probs=31.4
Q ss_pred CcchhhhhhhHHHHHHHHHHHHHHHHhCcchhh
Q 018479 314 WTRSAETWNGRAAMLAVLVLLVLEVTTGEGFLH 346 (355)
Q Consensus 314 ~~~~~e~~ngr~am~g~~~~~~~e~~~g~~~~~ 346 (355)
||++||+||||+||+||++++++|++||+++.+
T Consensus 1 ft~~aE~~NGRlAMiGfv~~~~~e~~tGq~ipG 33 (35)
T PHA02337 1 MTPEAEIFNGWLAMIGFVAAVGAYATTGQIIPG 33 (35)
T ss_pred CccHHHHHhhHHHHHHHHHHHHHHHHhCCCCCC
Confidence 789999999999999999999999999999865
No 13
>cd03415 CbiX_CbiC Archaeal sirohydrochlorin cobalt chelatase (CbiX) single domain. Proteins in this subgroup contain a single CbiX domain N-terminal to a precorrin-8X methylmutase (CbiC) domain. CbiX is a cobaltochelatase, responsible for the chelation of Co2+ into sirohydrochlorin, while CbiC catalyzes the conversion of cobalt-precorrin 8 to cobyrinic acid by methyl rearrangement. Both CbiX and CbiC are involved in vitamin B12 biosynthesis.
Probab=99.38 E-value=5.6e-12 Score=106.81 Aligned_cols=110 Identities=12% Similarity=0.060 Sum_probs=89.6
Q ss_pred cccCCCchhHHHHHHHHHHHHHHhccCCCceEEEe-eecCCCCHHHHHHHHHHcCCCEEEEeecCccccccchHHHHHHH
Q 018479 4 CFVLVLSLAIISCIQAEELRKSLWEKNLPAKVYVG-MRYWHPFTEEAIEQIKRDGITKLVVLPLYPQFSISTSGSSLRLL 82 (355)
Q Consensus 4 ~igggSPL~~~t~~qa~~l~~~L~~~~~~~~V~~a-mry~~P~i~~~l~~l~~~G~~~IvvlPlyPqyS~~ttgs~~~~~ 82 (355)
-+||||+..+.++. .+.+.+.++++ .+.+|+.| |.+++|++++++++|.++|+++|+|+|+|.. ..+|+.+|+
T Consensus 5 lvgHGSR~~~~~~~-~~~la~~l~~~-~~~~v~~afle~~~P~l~~~l~~l~~~G~~~ivVvPlFL~----~G~Hv~~Di 78 (125)
T cd03415 5 IITHGSRRNTFNED-MEEWAAYLERK-LGVPVYLTYNEYAEPNWRDLLNELLSEGYGHIIIALAFLG----RGNHVARDI 78 (125)
T ss_pred EEecCCCChHHHHH-HHHHHHHHHhc-cCCceEEEEeecCCCCHHHHHHHHHHCCCCEEEEehhhcc----CCcchHHHH
Confidence 47999999988865 55566666543 24567776 6999999999999999999999999999863 567999999
Q ss_pred HHHHHhc-------ccc--CCceeEEecCCCCChHHHHHHHHHHHH
Q 018479 83 ESIFRED-------EYL--VNMQHTVIPSWYQREGYITAMANLIEK 119 (355)
Q Consensus 83 ~e~~~~~-------~~~--~~~~~~~i~~~~~~p~yi~a~~~~I~~ 119 (355)
++.+.+. .++ +++++.+.++.+.||.+.+++++++++
T Consensus 79 P~~l~~~~~~~~~~~~~~~~~~~i~~~~pLG~~p~l~~~l~~r~~~ 124 (125)
T cd03415 79 MGELGVSRFYKWVMSKYGGKEILVYVTEPLADSPLVKLALFYRVKR 124 (125)
T ss_pred HHHHHhhcccchhhhccCCCCceEEEeCCCCCCHHHHHHHHHHHHh
Confidence 8888652 122 457799999999999999999999876
No 14
>PLN02757 sirohydrochlorine ferrochelatase
Probab=99.36 E-value=1.6e-11 Score=107.68 Aligned_cols=116 Identities=13% Similarity=0.062 Sum_probs=93.4
Q ss_pred cccCCCchhHHHHHHHHHHHHHHhccCCCceEEEe-eecCCCCHHHHHHHHHHcCCCEEEEeecCccccccchHHHHHHH
Q 018479 4 CFVLVLSLAIISCIQAEELRKSLWEKNLPAKVYVG-MRYWHPFTEEAIEQIKRDGITKLVVLPLYPQFSISTSGSSLRLL 82 (355)
Q Consensus 4 ~igggSPL~~~t~~qa~~l~~~L~~~~~~~~V~~a-mry~~P~i~~~l~~l~~~G~~~IvvlPlyPqyS~~ttgs~~~~~ 82 (355)
-+||||+....++. .+.+.+.+.++.....|..| |.+++|++++++++|.+.|+++|+++|+|.. +..++.+++
T Consensus 18 lvgHGSrd~~a~~~-~~~la~~l~~~~~~~~V~~aFle~~~Psl~eal~~l~~~g~~~vvVvP~FL~----~G~H~~~DI 92 (154)
T PLN02757 18 IVDHGSRRKESNLM-LEEFVAMYKQKTGHPIVEPAHMELAEPSIKDAFGRCVEQGASRVIVSPFFLS----PGRHWQEDI 92 (154)
T ss_pred EEeCCCCCHHHHHH-HHHHHHHHHhhCCCCcEEEEEEecCCCCHHHHHHHHHHCCCCEEEEEEhhhc----CCcchHhHH
Confidence 37899999987655 55566666554322345455 6999999999999999999999999999974 666777889
Q ss_pred HHHHHhc-cccCCceeEEecCCCCChHHHHHHHHHHHHHHHhC
Q 018479 83 ESIFRED-EYLVNMQHTVIPSWYQREGYITAMANLIEKELQNF 124 (355)
Q Consensus 83 ~e~~~~~-~~~~~~~~~~i~~~~~~p~yi~a~~~~I~~~l~~~ 124 (355)
++.+++. ..+|++++.+.++++.||.+++++.+++++++...
T Consensus 93 p~~v~~~~~~~p~~~i~~~~pLG~~p~l~~ll~~Ri~eal~~~ 135 (154)
T PLN02757 93 PALTAEAAKEHPGVKYLVTAPIGLHELMVDVVNDRIKYCLSHV 135 (154)
T ss_pred HHHHHHHHHHCCCcEEEECCCCCCCHHHHHHHHHHHHHHhhcc
Confidence 8877543 45688999999999999999999999999998753
No 15
>cd03409 Chelatase_Class_II Class II Chelatase: a family of ATP-independent monomeric or homodimeric enzymes that catalyze the insertion of metal into protoporphyrin rings. This family includes protoporphyrin IX ferrochelatase (HemH), sirohydrochlorin ferrochelatase (SirB) and the cobaltochelatases, CbiK and CbiX. HemH and SirB are involved in heme and siroheme biosynthesis, respectively, while the cobaltochelatases are associated with cobalamin biosynthesis. Excluded from this family are the ATP-dependent heterotrimeric chelatases (class I) and the multifunctional homodimeric enzymes with dehydrogenase and chelatase activities (class III).
Probab=99.33 E-value=1.4e-11 Score=99.39 Aligned_cols=88 Identities=31% Similarity=0.485 Sum_probs=77.7
Q ss_pred EEEEeeCCCchhhhcccCCchHHHHHHHHHHHHHHhcccccCCceeEEEEecccCCCCCCCcHHHHHHHHHhcCCceEEE
Q 018479 131 MIFFSAHGVPLAYVEEAGDPYKAEMEECVDLIMEELEKRKITNAYTLAYQSRVGPVEWLKPYTDETIIKLGQKGVKSLLA 210 (355)
Q Consensus 131 ~llfsaHgiP~~~v~~~GDpY~~~~~~ta~~v~e~l~~~~~~~~~~l~fQS~~G~~~Wl~P~~~d~l~~L~~~G~k~VvV 210 (355)
+|||++||+|. .++|...+.++++.|+++++.. ++.++|+|. ++|++++++++|.++|+++|+|
T Consensus 1 ~lllv~HGs~~------~s~~~~~~~~~~~~l~~~~~~~----~v~~a~~~~------~~P~i~~~l~~l~~~g~~~vvv 64 (101)
T cd03409 1 GLLVVGHGSPY------KDPYKKDIEAQAHNLAESLPDF----PYYVGFQSG------LGPDTEEAIRELAEEGYQRVVI 64 (101)
T ss_pred CEEEEECCCCC------CccHHHHHHHHHHHHHHHCCCC----CEEEEEECC------CCCCHHHHHHHHHHcCCCeEEE
Confidence 38999999962 2579999999999999987432 589999985 6899999999999999999999
Q ss_pred EcceecccchhhHHHHHHHHHHHHH
Q 018479 211 VPISFVSEHIETLEEIDVEYKELAL 235 (355)
Q Consensus 211 vP~gFvsD~lETl~eid~e~~e~a~ 235 (355)
+|+.|+ ++.|+.+||+.++.+...
T Consensus 65 vPl~~~-~g~h~~~di~~~~~~~~~ 88 (101)
T cd03409 65 VPLAPV-SGDEVFYDIDSEIGLVRK 88 (101)
T ss_pred EeCccc-cChhhHHHHHHHHHHHHH
Confidence 999999 999999999999988876
No 16
>PRK00923 sirohydrochlorin cobaltochelatase; Reviewed
Probab=99.32 E-value=8.8e-12 Score=105.39 Aligned_cols=111 Identities=17% Similarity=0.164 Sum_probs=90.0
Q ss_pred ccCCCchhHHHHHHHHHHHHHHhccCCCceEEEe-eecCCCCHHHHHHHHHHcCCCEEEEeecCccccccchHHHHHHHH
Q 018479 5 FVLVLSLAIISCIQAEELRKSLWEKNLPAKVYVG-MRYWHPFTEEAIEQIKRDGITKLVVLPLYPQFSISTSGSSLRLLE 83 (355)
Q Consensus 5 igggSPL~~~t~~qa~~l~~~L~~~~~~~~V~~a-mry~~P~i~~~l~~l~~~G~~~IvvlPlyPqyS~~ttgs~~~~~~ 83 (355)
+||||+....+ +..+.+.+.+.+++....|++| |+|.+|++++++++|.++|+++|+++|+|.. ...++.++++
T Consensus 7 v~hGS~~~~~~-~~~~~~~~~l~~~~~~~~v~~afle~~~P~l~~~l~~l~~~g~~~v~vvPlfl~----~G~h~~~dip 81 (126)
T PRK00923 7 VGHGSRLPYNK-EVVTKIAEKIKEKHPFYIVEVGFMEFNEPTIPEALKKLIGTGADKIIVVPVFLA----HGVHTKRDIP 81 (126)
T ss_pred EeCCCCChHHH-HHHHHHHHHHHHhCCCCeEEEEEEEcCCCCHHHHHHHHHHcCCCEEEEEchhhc----cCcccccccc
Confidence 68999986554 5577788888776656678888 6999999999999999999999999999963 5557777777
Q ss_pred HHHH-------h-ccccCCceeEEecCCCCChHHHHHHHHHHHHH
Q 018479 84 SIFR-------E-DEYLVNMQHTVIPSWYQREGYITAMANLIEKE 120 (355)
Q Consensus 84 e~~~-------~-~~~~~~~~~~~i~~~~~~p~yi~a~~~~I~~~ 120 (355)
+.+. . ...+|++++.+.++++.||.+++.+.+|++++
T Consensus 82 ~~~~~~~~~~~~~~~~~~~~~i~~~~~lG~~p~l~~~~~~r~~e~ 126 (126)
T PRK00923 82 RILGLDEGEKEEIEEDGKDVEIVYAEPLGADERIADIVLKRANEA 126 (126)
T ss_pred hhhhcccccccchhhcCCCeEEEEcCCCCCCHHHHHHHHHHHhhC
Confidence 6543 1 12357788999999999999999999999864
No 17
>PLN02757 sirohydrochlorine ferrochelatase
Probab=99.30 E-value=8.6e-11 Score=103.07 Aligned_cols=122 Identities=16% Similarity=0.151 Sum_probs=101.3
Q ss_pred CceEEEEeeCCCchhhhcccCCc-hHHHHHHHHHHHHHHhcccccCCceeEEEEecccCCCCCCCcHHHHHHHHHhcCCc
Q 018479 128 EQVMIFFSAHGVPLAYVEEAGDP-YKAEMEECVDLIMEELEKRKITNAYTLAYQSRVGPVEWLKPYTDETIIKLGQKGVK 206 (355)
Q Consensus 128 ~~~~llfsaHgiP~~~v~~~GDp-Y~~~~~~ta~~v~e~l~~~~~~~~~~l~fQS~~G~~~Wl~P~~~d~l~~L~~~G~k 206 (355)
++..||+.+||++ || ....+++.++.++++.+.. .+.+||.+. .+|+++++|+++.++|++
T Consensus 12 ~~~~lllvgHGSr--------d~~a~~~~~~la~~l~~~~~~~----~V~~aFle~------~~Psl~eal~~l~~~g~~ 73 (154)
T PLN02757 12 DKDGVVIVDHGSR--------RKESNLMLEEFVAMYKQKTGHP----IVEPAHMEL------AEPSIKDAFGRCVEQGAS 73 (154)
T ss_pred CCcEEEEEeCCCC--------CHHHHHHHHHHHHHHHhhCCCC----cEEEEEEec------CCCCHHHHHHHHHHCCCC
Confidence 4568999999993 34 4789999999999876542 378999774 379999999999999999
Q ss_pred eEEEEcce-ecccchhhHHHHHHHHHHHHHhcCCceEEEcCCCCCCHHHHHHHHHHHHHhCCCC
Q 018479 207 SLLAVPIS-FVSEHIETLEEIDVEYKELALKSGIEKWGRVPALGCEATFISDLADAVIESLPYV 269 (355)
Q Consensus 207 ~VvVvP~g-FvsD~lETl~eid~e~~e~a~~~G~~~~~rv~~ln~~p~fi~~La~~V~e~l~~~ 269 (355)
+|+|+|+. |..-|+ ..||..+..+...+.+..++.+.++|+.||.+++.|.+++.+.+...
T Consensus 74 ~vvVvP~FL~~G~H~--~~DIp~~v~~~~~~~p~~~i~~~~pLG~~p~l~~ll~~Ri~eal~~~ 135 (154)
T PLN02757 74 RVIVSPFFLSPGRHW--QEDIPALTAEAAKEHPGVKYLVTAPIGLHELMVDVVNDRIKYCLSHV 135 (154)
T ss_pred EEEEEEhhhcCCcch--HhHHHHHHHHHHHHCCCcEEEECCCCCCCHHHHHHHHHHHHHHhhcc
Confidence 99999974 444454 67888888888888776689999999999999999999999998654
No 18
>cd03414 CbiX_SirB_C Sirohydrochlorin cobalt chelatase (CbiX) and sirohydrochlorin iron chelatase (SirB), C-terminal domain. SirB catalyzes the ferro-chelation of sirohydrochlorin to siroheme, the prosthetic group of sulfite and nitrite reductases. CbiX is a cobaltochelatase, responsible for the chelation of Co2+ into sirohydrochlorin, an important step in the vitamin B12 biosynthetic pathway. CbiX often contains a C-terminal histidine-rich region that may be important for metal delivery and/or storage, and may also contain an iron-sulfur center. Both CbiX and SirB are found in a wide range of bacteria.
Probab=99.26 E-value=8.3e-11 Score=97.85 Aligned_cols=110 Identities=18% Similarity=0.139 Sum_probs=87.0
Q ss_pred ccCCCchhHHHHHHHHHHHHHHhccCCCceEEEee-ecCCCCHHHHHHHHHHcCCCEEEEeecCccccccchHHHHHHHH
Q 018479 5 FVLVLSLAIISCIQAEELRKSLWEKNLPAKVYVGM-RYWHPFTEEAIEQIKRDGITKLVVLPLYPQFSISTSGSSLRLLE 83 (355)
Q Consensus 5 igggSPL~~~t~~qa~~l~~~L~~~~~~~~V~~am-ry~~P~i~~~l~~l~~~G~~~IvvlPlyPqyS~~ttgs~~~~~~ 83 (355)
+||||+....++ ..+.+.+.+.++.....|+.|| ..+.|++++++++|.++|+++|+++|+|.. . |...+++.
T Consensus 6 v~HGS~~~~~~~-~~~~l~~~l~~~~~~~~v~~afle~~~P~~~~~l~~l~~~g~~~i~vvP~fL~----~-G~h~~~i~ 79 (117)
T cd03414 6 VGRGSSDPDANA-DVAKIARLLEEGTGFARVETAFAAATRPSLPEALERLRALGARRVVVLPYLLF----T-GVLMDRIE 79 (117)
T ss_pred EcCCCCCHHHHH-HHHHHHHHHHHhcCCCeEEEEEecCCCCCHHHHHHHHHHcCCCEEEEEechhc----C-CchHHHHH
Confidence 689999776664 5777888887665556788885 678999999999999999999999999863 2 33345676
Q ss_pred HHHHhccccCCceeEEecCCCCChHHHHHHHHHHHHH
Q 018479 84 SIFREDEYLVNMQHTVIPSWYQREGYITAMANLIEKE 120 (355)
Q Consensus 84 e~~~~~~~~~~~~~~~i~~~~~~p~yi~a~~~~I~~~ 120 (355)
+.+.+.+..|..++.+.++.+.||.+++++.++++++
T Consensus 80 ~~~~~~~~~~~~~i~~~~pLG~~~~l~~~l~~r~~~~ 116 (117)
T cd03414 80 EQVAELAAEPGIEFVLAPPLGPHPELAEALLERVREA 116 (117)
T ss_pred HHHHHHHhCCCceEEECCCCCCCHHHHHHHHHHHHhh
Confidence 6554332226778999999999999999999999875
No 19
>PRK05782 bifunctional sirohydrochlorin cobalt chelatase/precorrin-8X methylmutase; Validated
Probab=99.13 E-value=4.9e-10 Score=109.50 Aligned_cols=115 Identities=10% Similarity=0.076 Sum_probs=93.0
Q ss_pred cccCCCchhHHHHHHHHHHHHHHhccCCCceEEEe-eecCCCCHHHHHHHHHHcCCCEEEEeecCccccccchHHHHHHH
Q 018479 4 CFVLVLSLAIISCIQAEELRKSLWEKNLPAKVYVG-MRYWHPFTEEAIEQIKRDGITKLVVLPLYPQFSISTSGSSLRLL 82 (355)
Q Consensus 4 ~igggSPL~~~t~~qa~~l~~~L~~~~~~~~V~~a-mry~~P~i~~~l~~l~~~G~~~IvvlPlyPqyS~~ttgs~~~~~ 82 (355)
-+||||+..+.++. .+.|.+.+.++. +.+|+.| |.+++|++++++++|.++|+++|+|+|+|.. +.+|+.+|+
T Consensus 11 LvgHGSRdp~~~~~-~~~La~~l~~~~-~~~V~~aFLE~~ePsl~eal~~l~~~G~~~IvVvPlFL~----~G~Hv~~DI 84 (335)
T PRK05782 11 LIGHGSRRETFNSD-MEGMANYLKEKL-GVPIYLTYNEFAEPNWRSLLNEIIKEGYRRVIIALAFLG----RGNHVFRDI 84 (335)
T ss_pred EEecCCCChHHHHH-HHHHHHHHHhcc-CCceEEEEeccCCCCHHHHHHHHHHCCCCEEEEeccccc----CCcchhhhH
Confidence 47999999988876 555666665432 3467777 6999999999999999999999999999863 567999999
Q ss_pred HHHHHh--c-----ccc--CCceeEEecCCCCChHHHHHHHHHHHHHHHhC
Q 018479 83 ESIFRE--D-----EYL--VNMQHTVIPSWYQREGYITAMANLIEKELQNF 124 (355)
Q Consensus 83 ~e~~~~--~-----~~~--~~~~~~~i~~~~~~p~yi~a~~~~I~~~l~~~ 124 (355)
++.+.. . ..+ +++++++.++++.||.+++++.+|+++++...
T Consensus 85 P~~L~~~~~~~~~~~~~~~~~i~i~l~~pLG~~p~l~~ll~~Rv~eal~~~ 135 (335)
T PRK05782 85 MGELGVQRLNSWEVSKISGKEVEFYVTEPLSDSPLVGLALYYRLARALDAL 135 (335)
T ss_pred HHHHHHhhhcchhhhhcCCCceeEEECCCCCCChHHHHHHHHHHHHHhhcC
Confidence 887763 1 222 34678999999999999999999999998643
No 20
>cd03409 Chelatase_Class_II Class II Chelatase: a family of ATP-independent monomeric or homodimeric enzymes that catalyze the insertion of metal into protoporphyrin rings. This family includes protoporphyrin IX ferrochelatase (HemH), sirohydrochlorin ferrochelatase (SirB) and the cobaltochelatases, CbiK and CbiX. HemH and SirB are involved in heme and siroheme biosynthesis, respectively, while the cobaltochelatases are associated with cobalamin biosynthesis. Excluded from this family are the ATP-dependent heterotrimeric chelatases (class I) and the multifunctional homodimeric enzymes with dehydrogenase and chelatase activities (class III).
Probab=99.12 E-value=3.9e-10 Score=90.97 Aligned_cols=76 Identities=26% Similarity=0.207 Sum_probs=57.8
Q ss_pred ccCCCch----hHHHHHHHHHHHHHHhccCCCceEEEeeecC-CCCHHHHHHHHHHcCCCEEEEeecCccccccchH-HH
Q 018479 5 FVLVLSL----AIISCIQAEELRKSLWEKNLPAKVYVGMRYW-HPFTEEAIEQIKRDGITKLVVLPLYPQFSISTSG-SS 78 (355)
Q Consensus 5 igggSPL----~~~t~~qa~~l~~~L~~~~~~~~V~~amry~-~P~i~~~l~~l~~~G~~~IvvlPlyPqyS~~ttg-s~ 78 (355)
+|||||. +..++++++.|++.+. +..|++||+++ +|++++++++|+++|+++|+++|+||+ +..++. ..
T Consensus 5 v~HGs~~~s~~~~~~~~~~~~l~~~~~----~~~v~~a~~~~~~P~i~~~l~~l~~~g~~~vvvvPl~~~-~g~h~~~di 79 (101)
T cd03409 5 VGHGSPYKDPYKKDIEAQAHNLAESLP----DFPYYVGFQSGLGPDTEEAIRELAEEGYQRVVIVPLAPV-SGDEVFYDI 79 (101)
T ss_pred EECCCCCCccHHHHHHHHHHHHHHHCC----CCCEEEEEECCCCCCHHHHHHHHHHcCCCeEEEEeCccc-cChhhHHHH
Confidence 5677655 5667777777766653 56799999999 999999999999999999999999998 444443 44
Q ss_pred HHHHHHH
Q 018479 79 LRLLESI 85 (355)
Q Consensus 79 ~~~~~e~ 85 (355)
.+++.+.
T Consensus 80 ~~~~~~~ 86 (101)
T cd03409 80 DSEIGLV 86 (101)
T ss_pred HHHHHHH
Confidence 4444333
No 21
>cd03415 CbiX_CbiC Archaeal sirohydrochlorin cobalt chelatase (CbiX) single domain. Proteins in this subgroup contain a single CbiX domain N-terminal to a precorrin-8X methylmutase (CbiC) domain. CbiX is a cobaltochelatase, responsible for the chelation of Co2+ into sirohydrochlorin, while CbiC catalyzes the conversion of cobalt-precorrin 8 to cobyrinic acid by methyl rearrangement. Both CbiX and CbiC are involved in vitamin B12 biosynthesis.
Probab=99.10 E-value=2.1e-09 Score=91.08 Aligned_cols=115 Identities=17% Similarity=0.093 Sum_probs=89.0
Q ss_pred eEEEEeeCCCchhhhcccCCch-HHHHHHHHHHHHHHhcccccCCceeEEEEecccCCCCCCCcHHHHHHHHHhcCCceE
Q 018479 130 VMIFFSAHGVPLAYVEEAGDPY-KAEMEECVDLIMEELEKRKITNAYTLAYQSRVGPVEWLKPYTDETIIKLGQKGVKSL 208 (355)
Q Consensus 130 ~~llfsaHgiP~~~v~~~GDpY-~~~~~~ta~~v~e~l~~~~~~~~~~l~fQS~~G~~~Wl~P~~~d~l~~L~~~G~k~V 208 (355)
+.||+.+||+. ||. ...+++.++.++++.+. ++..||..- .+|++.+++++|.++|+++|
T Consensus 1 ~~lllvgHGSR--------~~~~~~~~~~la~~l~~~~~~-----~v~~afle~------~~P~l~~~l~~l~~~G~~~i 61 (125)
T cd03415 1 TAIIIITHGSR--------RNTFNEDMEEWAAYLERKLGV-----PVYLTYNEY------AEPNWRDLLNELLSEGYGHI 61 (125)
T ss_pred CEEEEEecCCC--------ChHHHHHHHHHHHHHHhccCC-----ceEEEEeec------CCCCHHHHHHHHHHCCCCEE
Confidence 46899999993 444 77888888888865432 488999764 37999999999999999999
Q ss_pred EEEcceecccchhhHHHHHHHHHHHH------Hhc--CCceEEEcCCCCCCHHHHHHHHHHHHH
Q 018479 209 LAVPISFVSEHIETLEEIDVEYKELA------LKS--GIEKWGRVPALGCEATFISDLADAVIE 264 (355)
Q Consensus 209 vVvP~gFvsD~lETl~eid~e~~e~a------~~~--G~~~~~rv~~ln~~p~fi~~La~~V~e 264 (355)
+|+|+ |++....+-.||..+..+.. .+. ...++..++.|++||.+++++++++.+
T Consensus 62 vVvPl-FL~~G~Hv~~DiP~~l~~~~~~~~~~~~~~~~~~~i~~~~pLG~~p~l~~~l~~r~~~ 124 (125)
T cd03415 62 IIALA-FLGRGNHVARDIMGELGVSRFYKWVMSKYGGKEILVYVTEPLADSPLVKLALFYRVKR 124 (125)
T ss_pred EEehh-hccCCcchHHHHHHHHHhhcccchhhhccCCCCceEEEeCCCCCCHHHHHHHHHHHHh
Confidence 99974 44444555789988877631 122 123599999999999999999999986
No 22
>cd03414 CbiX_SirB_C Sirohydrochlorin cobalt chelatase (CbiX) and sirohydrochlorin iron chelatase (SirB), C-terminal domain. SirB catalyzes the ferro-chelation of sirohydrochlorin to siroheme, the prosthetic group of sulfite and nitrite reductases. CbiX is a cobaltochelatase, responsible for the chelation of Co2+ into sirohydrochlorin, an important step in the vitamin B12 biosynthetic pathway. CbiX often contains a C-terminal histidine-rich region that may be important for metal delivery and/or storage, and may also contain an iron-sulfur center. Both CbiX and SirB are found in a wide range of bacteria.
Probab=99.09 E-value=3.9e-09 Score=87.79 Aligned_cols=114 Identities=18% Similarity=0.269 Sum_probs=87.5
Q ss_pred EEEEeeCCCchhhhcccCCchHHHHHHHHHHHHHHhcccccCCceeEEEEecccCCCCCCCcHHHHHHHHHhcCCceEEE
Q 018479 131 MIFFSAHGVPLAYVEEAGDPYKAEMEECVDLIMEELEKRKITNAYTLAYQSRVGPVEWLKPYTDETIIKLGQKGVKSLLA 210 (355)
Q Consensus 131 ~llfsaHgiP~~~v~~~GDpY~~~~~~ta~~v~e~l~~~~~~~~~~l~fQS~~G~~~Wl~P~~~d~l~~L~~~G~k~VvV 210 (355)
.+|+.+||.+. ......+.+.++.++++++.. ++..||.+. .+|+++++++++.++|+++|+|
T Consensus 2 a~llv~HGS~~-------~~~~~~~~~l~~~l~~~~~~~----~v~~afle~------~~P~~~~~l~~l~~~g~~~i~v 64 (117)
T cd03414 2 AVVLVGRGSSD-------PDANADVAKIARLLEEGTGFA----RVETAFAAA------TRPSLPEALERLRALGARRVVV 64 (117)
T ss_pred EEEEEcCCCCC-------HHHHHHHHHHHHHHHHhcCCC----eEEEEEecC------CCCCHHHHHHHHHHcCCCEEEE
Confidence 68999999841 124567888888888776422 488999874 2799999999999999999999
Q ss_pred Ecce-ecccchhhHHHHHHHHHHHHHhcCCceEEEcCCCCCCHHHHHHHHHHHHHh
Q 018479 211 VPIS-FVSEHIETLEEIDVEYKELALKSGIEKWGRVPALGCEATFISDLADAVIES 265 (355)
Q Consensus 211 vP~g-FvsD~lETl~eid~e~~e~a~~~G~~~~~rv~~ln~~p~fi~~La~~V~e~ 265 (355)
+|+- |-..|. .+|..+..+...+ +...+...+.|+.||.+++++.+++++.
T Consensus 65 vP~fL~~G~h~---~~i~~~~~~~~~~-~~~~i~~~~pLG~~~~l~~~l~~r~~~~ 116 (117)
T cd03414 65 LPYLLFTGVLM---DRIEEQVAELAAE-PGIEFVLAPPLGPHPELAEALLERVREA 116 (117)
T ss_pred EechhcCCchH---HHHHHHHHHHHhC-CCceEEECCCCCCCHHHHHHHHHHHHhh
Confidence 9974 333343 4566666655544 4457999999999999999999999875
No 23
>PF06180 CbiK: Cobalt chelatase (CbiK); InterPro: IPR010388 This group, typified by Salmonella typhimurium CbiK, contains anaerobic cobalt chelatases that act in the anaerobic cobalamin biosynthesis pathway [, ]. Cobalamin (vitamin B12) can be complexed with metal via ATP-dependent reactions (aerobic pathway) (e.g., in Pseudomonas denitrificans) or via ATP-independent reactions (anaerobic pathway) (e.g., in S. typhimurium) [, ]. The corresponding cobalt chelatases are not homologous. This group belongs to the class of ATP-independent, single-subunit chelatases that also includes distantly related protoporphyrin IX (PPIX) ferrochelatase (HemH) (Class II chelatases) []. The structure of S. typhimurium CbiK shows that it has a remarkably similar topology to Bacillus subtilis ferrochelatase despite only weak sequence conservation []. Both enzymes contain a histidine residue identified as the metal ion ligand, but CbiK contains a second histidine in place of the glutamic acid residue identified as a general base in PPIX ferrochelatase []. Site-directed mutagenesis has confirmed a role for this histidine and a nearby glutamic acid in cobalt binding, modulating metal ion specificity as well as catalytic efficiency []. It should be noted that CysG and Met8p, which are multifunctional proteins associated with siroheme biosynthesis, include chelatase activity and can therefore be considered as the third class of chelatases []. As with the class II chelatases, they do not require ATP for activity. However, they are not structurally similar to HemH or CbiK, and it is likely that they have arisen by the acquisition of a chelatase function within a dehydrogenase catalytic framework [, ].; GO: 0016852 sirohydrochlorin cobaltochelatase activity; PDB: 1QGO_A 2XWP_A 2XVZ_A 2XVX_A 2XVY_A.
Probab=99.06 E-value=8.9e-09 Score=97.69 Aligned_cols=218 Identities=17% Similarity=0.219 Sum_probs=129.7
Q ss_pred HHHHHHHHhccCCCceEEEeee-----------cC--CCCHHHHHHHHHHcCCCEEEEeecCccccccchHHHHHHHHHH
Q 018479 19 AEELRKSLWEKNLPAKVYVGMR-----------YW--HPFTEEAIEQIKRDGITKLVVLPLYPQFSISTSGSSLRLLESI 85 (355)
Q Consensus 19 a~~l~~~L~~~~~~~~V~~amr-----------y~--~P~i~~~l~~l~~~G~~~IvvlPlyPqyS~~ttgs~~~~~~e~ 85 (355)
.+.+++.+++.-++++|++||. .+ -|+..++|++|.++|+++|+|.||.- ..|.=.+++.+.
T Consensus 20 i~~ie~~~~~~fp~~~V~~AfTS~~I~~kl~~~~g~~i~~~~eaL~~L~~~G~~~V~VQplhi-----ipG~Ey~~l~~~ 94 (262)
T PF06180_consen 20 IDAIEKAVREAFPDYDVRRAFTSRIIRKKLAERDGIKIDSPEEALAKLADEGYTEVVVQPLHI-----IPGEEYEKLRAT 94 (262)
T ss_dssp HHHHHHHHHHCSTTSEEEEEES-HHHHHHHHHCHT-----HHHHHHHHHHCT--EEEEEE--S-----CSSHHHHHHHHH
T ss_pred HHHHHHHHHHHCCCCcEEEEchHHHHHHHHHhcCCCCcCCHHHHHHHHHHCCCCEEEEeecce-----eCcHhHHHHHHH
Confidence 3566677776667899999972 12 49999999999999999999999975 444544555554
Q ss_pred HHhccccCCceeEEecCCCC------ChHHHHHHHHHHHHHHHhCCCCCceEEEEeeCCCchhhhcccCCchHHHHHHHH
Q 018479 86 FREDEYLVNMQHTVIPSWYQ------REGYITAMANLIEKELQNFDSPEQVMIFFSAHGVPLAYVEEAGDPYKAEMEECV 159 (355)
Q Consensus 86 ~~~~~~~~~~~~~~i~~~~~------~p~yi~a~~~~I~~~l~~~~~~~~~~llfsaHgiP~~~v~~~GDpY~~~~~~ta 159 (355)
.+.... .--++.+.+|.-. ++.=++.+++.+.+.+... ..+..+||.+||.|... +.+-
T Consensus 95 v~~~~~-~F~~i~~g~PLL~~~g~~~~~~D~~~va~aL~~~~~~~--~~~~a~vlmGHGt~h~a-----n~~Y------- 159 (262)
T PF06180_consen 95 VEAYKH-DFKKIVLGRPLLYTMGQENSPEDYEAVAEALAEEFPKK--RKDEAVVLMGHGTPHPA-----NAAY------- 159 (262)
T ss_dssp HHHHCC-CSSEEEEE--SCSS-----SHHHHHHHHHHHHCCS-TT---TTEEEEEEE---SCHH-----HHHH-------
T ss_pred HHHhhc-cCCeEEecccccccccccCChHHHHHHHHHHHHhcccc--CCCCEEEEEeCCCCCCc-----cHHH-------
Confidence 433221 1126788888766 4666666666555433322 24568999999997542 1121
Q ss_pred HHHHHHhcccccCCceeEEEEecccCCCCCCCcHHHHHHHHHhcCCceEEEEcceec-ccchhhHHHH----HHHHHHHH
Q 018479 160 DLIMEELEKRKITNAYTLAYQSRVGPVEWLKPYTDETIIKLGQKGVKSLLAVPISFV-SEHIETLEEI----DVEYKELA 234 (355)
Q Consensus 160 ~~v~e~l~~~~~~~~~~l~fQS~~G~~~Wl~P~~~d~l~~L~~~G~k~VvVvP~gFv-sD~lETl~ei----d~e~~e~a 234 (355)
..+...+...+. .++.++--- | .|++++++++|.+.|+|+|.++|.-+| .||. ..|+ +.-.+...
T Consensus 160 ~~l~~~l~~~~~-~~v~vgtvE--G-----~P~~~~vi~~L~~~g~k~V~L~PlMlVAGdHa--~nDmaGde~dSWks~L 229 (262)
T PF06180_consen 160 SALQAMLKKHGY-PNVFVGTVE--G-----YPSLEDVIARLKKKGIKKVHLIPLMLVAGDHA--KNDMAGDEEDSWKSRL 229 (262)
T ss_dssp HHHHHHHHCCT--TTEEEEETT--S-----SSBHHHHHHHHHHHT-SEEEEEEESSS--HHH--HCCCCSSSTTSHHHHH
T ss_pred HHHHHHHHhCCC-CeEEEEEeC--C-----CCCHHHHHHHHHhcCCCeEEEEecccccchhh--hhhhcCCCcchHHHHH
Confidence 223333322211 134554321 2 599999999999999999999998544 5665 3344 22457777
Q ss_pred HhcCCceEEEcCCCCCCHHHHHHHHHHHHHhC
Q 018479 235 LKSGIEKWGRVPALGCEATFISDLADAVIESL 266 (355)
Q Consensus 235 ~~~G~~~~~rv~~ln~~p~fi~~La~~V~e~l 266 (355)
++.|+.-=....-|+..|.+.+...+.+++++
T Consensus 230 ~~~G~~v~~~l~GLGE~~~i~~ifi~hl~~ai 261 (262)
T PF06180_consen 230 EAAGFEVTCVLKGLGEYPAIQQIFIEHLKEAI 261 (262)
T ss_dssp HHTT-EEEE----GGGSHHHHHHHHHHHHHHH
T ss_pred HHCCCEEEEEeccCcCCHHHHHHHHHHHHHHh
Confidence 88898755566779999999999999888764
No 24
>PRK00923 sirohydrochlorin cobaltochelatase; Reviewed
Probab=99.06 E-value=2.4e-09 Score=90.49 Aligned_cols=117 Identities=16% Similarity=0.173 Sum_probs=86.1
Q ss_pred eEEEEeeCCCchhhhcccCCchHHHHHHHHHHHHHHhcccccCCceeEEEEecccCCCCCCCcHHHHHHHHHhcCCceEE
Q 018479 130 VMIFFSAHGVPLAYVEEAGDPYKAEMEECVDLIMEELEKRKITNAYTLAYQSRVGPVEWLKPYTDETIIKLGQKGVKSLL 209 (355)
Q Consensus 130 ~~llfsaHgiP~~~v~~~GDpY~~~~~~ta~~v~e~l~~~~~~~~~~l~fQS~~G~~~Wl~P~~~d~l~~L~~~G~k~Vv 209 (355)
..+|+.+||++.. .....+.+.++.++++.+.. ++.+||.+. ..|++++++++|.++|+++|+
T Consensus 2 ~~lvlv~hGS~~~-------~~~~~~~~~~~~l~~~~~~~----~v~~afle~------~~P~l~~~l~~l~~~g~~~v~ 64 (126)
T PRK00923 2 LGLLLVGHGSRLP-------YNKEVVTKIAEKIKEKHPFY----IVEVGFMEF------NEPTIPEALKKLIGTGADKII 64 (126)
T ss_pred cEEEEEeCCCCCh-------HHHHHHHHHHHHHHHhCCCC----eEEEEEEEc------CCCCHHHHHHHHHHcCCCEEE
Confidence 3689999999421 13567788888888765322 488899763 269999999999999999999
Q ss_pred EEcce-ecccchhhHHHHHHHHH-------HHHHhcCCceEEEcCCCCCCHHHHHHHHHHHHHh
Q 018479 210 AVPIS-FVSEHIETLEEIDVEYK-------ELALKSGIEKWGRVPALGCEATFISDLADAVIES 265 (355)
Q Consensus 210 VvP~g-FvsD~lETl~eid~e~~-------e~a~~~G~~~~~rv~~ln~~p~fi~~La~~V~e~ 265 (355)
|+|+- |...|.+ .||..+.. ++..+.....+.+.++|++||.+++.+.+++.++
T Consensus 65 vvPlfl~~G~h~~--~dip~~~~~~~~~~~~~~~~~~~~~i~~~~~lG~~p~l~~~~~~r~~e~ 126 (126)
T PRK00923 65 VVPVFLAHGVHTK--RDIPRILGLDEGEKEEIEEDGKDVEIVYAEPLGADERIADIVLKRANEA 126 (126)
T ss_pred EEchhhccCcccc--cccchhhhcccccccchhhcCCCeEEEEcCCCCCCHHHHHHHHHHHhhC
Confidence 99964 4444553 46655443 3333334446899999999999999999999863
No 25
>PF01903 CbiX: CbiX; InterPro: IPR002762 Cobalamin (vitamin B12) is a structurally complex cofactor, consisting of a modified tetrapyrrole with a centrally chelated cobalt. Cobalamin is usually found in one of two biologically active forms: methylcobalamin and adocobalamin. Most prokaryotes, as well as animals, have cobalamin-dependent enzymes, whereas plants and fungi do not appear to use it. In bacteria and archaea, these include methionine synthase, ribonucleotide reductase, glutamate and methylmalonyl-CoA mutases, ethanolamine ammonia lyase, and diol dehydratase []. In mammals, cobalamin is obtained through the diet, and is required for methionine synthase and methylmalonyl-CoA mutase []. There are at least two distinct cobalamin biosynthetic pathways in bacteria []: Aerobic pathway that requires oxygen and in which cobalt is inserted late in the pathway []; found in Pseudomonas denitrificans and Rhodobacter capsulatus. Anaerobic pathway in which cobalt insertion is the first committed step towards cobalamin synthesis []; found in Salmonella typhimurium, Bacillus megaterium, and Propionibacterium freudenreichii subsp. shermanii. Either pathway can be divided into two parts: (1) corrin ring synthesis (differs in aerobic and anaerobic pathways) and (2) adenosylation of corrin ring, attachment of aminopropanol arm, and assembly of the nucleotide loop (common to both pathways) []. There are about 30 enzymes involved in either pathway, where those involved in the aerobic pathway are prefixed Cob and those of the anaerobic pathway Cbi. Several of these enzymes are pathway-specific: CbiD, CbiG, and CbiK are specific to the anaerobic route of S. typhimurium, whereas CobE, CobF, CobG, CobN, CobS, CobT, and CobW are unique to the aerobic pathway of P. denitrificans. This entry represents the CbiX protein, which functions as a cobalt-chelatase in the anaerobic biosynthesis of cobalamin. It catalyses the insertion of cobalt into sirohydrochlorin. The structure of CbiX from Archaeoglobus fulgidus consists of a central mixed beta-sheet flanked by four alpha-helices, although it is about half the size of other Class II tetrapyrrole chelatases []. The CbiX proteins found in archaea appear to be shorter than those found in eubacteria [].; GO: 0016829 lyase activity, 0046872 metal ion binding, 0009236 cobalamin biosynthetic process; PDB: 2XWQ_C 2DJ5_A 1TJN_A 2XWS_A 3LYH_B 2JH3_D.
Probab=99.04 E-value=5.9e-10 Score=90.86 Aligned_cols=103 Identities=20% Similarity=0.197 Sum_probs=79.9
Q ss_pred CCCchhHHHHHHHHHHHHHHhccCCCceEEEee-ecCCCCHHHHHHHHHHcCCCEEEEeecCccccccchHHHHHHHHHH
Q 018479 7 LVLSLAIISCIQAEELRKSLWEKNLPAKVYVGM-RYWHPFTEEAIEQIKRDGITKLVVLPLYPQFSISTSGSSLRLLESI 85 (355)
Q Consensus 7 ggSPL~~~t~~qa~~l~~~L~~~~~~~~V~~am-ry~~P~i~~~l~~l~~~G~~~IvvlPlyPqyS~~ttgs~~~~~~e~ 85 (355)
|||+....+.. .+.+.+.|.++.. ..|..|| .+.+|++++++++|.+.|+++|+|+|+|.. +..+..+++++.
T Consensus 1 HGSr~~~~~~~-~~~la~~l~~~~~-~~v~~~fle~~~P~l~~~l~~l~~~g~~~ivvvP~fL~----~G~h~~~DIp~~ 74 (105)
T PF01903_consen 1 HGSRDPEANAE-LEDLADRLRERLP-VPVEVAFLEFAEPSLEEALERLVAQGARRIVVVPYFLF----PGYHVKRDIPEA 74 (105)
T ss_dssp -STSSCHHHHH-HHHHHHHHHHHTS-SEEEEEESSCCCSCCHHCCHHHHCCTCSEEEEEEESSS----SSHHHHCHHHHH
T ss_pred CCCCCHHHHHH-HHHHHHHHHhhcC-CeEEEEEEecCCCCHHHHHHHHHHcCCCeEEEEeeeec----CccchHhHHHHH
Confidence 68877666655 4666677766655 7788886 899999999999999999999999999973 556777789888
Q ss_pred HHhc-cccCCceeEEecCCCCChHHHHHHHH
Q 018479 86 FRED-EYLVNMQHTVIPSWYQREGYITAMAN 115 (355)
Q Consensus 86 ~~~~-~~~~~~~~~~i~~~~~~p~yi~a~~~ 115 (355)
++.. ..+|++++.+.++++.||.+.+++++
T Consensus 75 l~~~~~~~~~~~v~~~~pLG~~p~l~~~l~e 105 (105)
T PF01903_consen 75 LAEARERHPGIEVRVAPPLGPHPLLAELLAE 105 (105)
T ss_dssp HCHHHHCSTTEEEEE---GGGSCCHHHHHH-
T ss_pred HHHHHhhCCceEEEECCCCCCCHHHHHHHhC
Confidence 7543 35678899999999999999998864
No 26
>PLN00014 light-harvesting-like protein 3; Provisional
Probab=99.03 E-value=1.5e-10 Score=105.32 Aligned_cols=41 Identities=32% Similarity=0.498 Sum_probs=37.1
Q ss_pred cCCCcchhhhhhhHHHHHHHHHHHHHHHHhCcchhhhhcccc
Q 018479 311 EWGWTRSAETWNGRAAMLAVLVLLVLEVTTGEGFLHQWGILP 352 (355)
Q Consensus 311 ~~g~~~~~e~~ngr~am~g~~~~~~~e~~~g~~~~~~~~~~~ 352 (355)
.|+|.. +|++|||+|||||++++++|++||+|+++|+|-.+
T Consensus 156 rf~l~~-aE~lNGR~AMiGFvaal~~E~~TG~gll~Qlg~f~ 196 (250)
T PLN00014 156 RFHLPE-AELLNGRAAMVGFFMAYLVDSLTGVGLVDQMGNFF 196 (250)
T ss_pred hccCch-hHhhhhHHHHHHHHHHHHHHHHcCCcHHHHHhhhh
Confidence 467764 99999999999999999999999999999998754
No 27
>PLN00084 photosystem II subunit S (PsbS); Provisional
Probab=98.90 E-value=9.5e-10 Score=95.71 Aligned_cols=35 Identities=34% Similarity=0.453 Sum_probs=33.1
Q ss_pred chhhhhhhHHHHHHHHHHHHHHHHh-Ccchhhhhcc
Q 018479 316 RSAETWNGRAAMLAVLVLLVLEVTT-GEGFLHQWGI 350 (355)
Q Consensus 316 ~~~e~~ngr~am~g~~~~~~~e~~~-g~~~~~~~~~ 350 (355)
+..|+||||+||+||++++++|++| |+|+++|+++
T Consensus 136 K~nE~~NGRLAMLGF~~alitE~lTgGqGiL~Ql~~ 171 (214)
T PLN00084 136 KPYELFNGRLAMLGFAFAIAGDAVTGGMGPLEQFNG 171 (214)
T ss_pred cchhhhhhHHHHHHHHHHHHHHHHhCCcchHHHhcc
Confidence 4589999999999999999999999 9999999986
No 28
>cd03412 CbiK_N Anaerobic cobalamin biosynthetic cobalt chelatase (CbiK), N-terminal domain. CbiK is part of the cobalt-early path for cobalamin biosynthesis. It catalyzes the insertion of cobalt into the oxidized form of precorrin-2, factor II (sirohydrochlorin), the second step of the anaerobic branch of vitamin B12 biosynthesis. CbiK belongs to the class II family of chelatases and is a homomeric enzyme that does not require ATP for its enzymatic activity.
Probab=98.89 E-value=2.9e-08 Score=84.35 Aligned_cols=108 Identities=12% Similarity=0.037 Sum_probs=87.4
Q ss_pred ccCCCchhHHHHHHHHHHHHHHhccCCCceEEEeee------------cCCCCHHHHHHHHHHcCCCEEEEeecCccccc
Q 018479 5 FVLVLSLAIISCIQAEELRKSLWEKNLPAKVYVGMR------------YWHPFTEEAIEQIKRDGITKLVVLPLYPQFSI 72 (355)
Q Consensus 5 igggSPL~~~t~~qa~~l~~~L~~~~~~~~V~~amr------------y~~P~i~~~l~~l~~~G~~~IvvlPlyPqyS~ 72 (355)
+|+||...+.. +-.+.+++.++++.++.+|++||. ...|++++++++|.++|+++|+|+|++.
T Consensus 6 v~fGS~~~~~~-~~~~~i~~~l~~~~p~~~V~~afts~~i~~~l~~~~~~~p~~~eaL~~l~~~G~~~V~V~Pl~l---- 80 (127)
T cd03412 6 VSFGTSYPTAE-KTIDAIEDKVRAAFPDYEVRWAFTSRMIRKKLKKRGIEVDTPEEALAKLAADGYTEVIVQSLHI---- 80 (127)
T ss_pred EeCCCCCHHHH-HHHHHHHHHHHHHCCCCeEEEEecHHHHHHHHHhcCCCCCCHHHHHHHHHHCCCCEEEEEeCee----
Confidence 57888888444 457778888877767889999974 5589999999999999999999999986
Q ss_pred cchHHHHHHHHHHHHhccccCCceeEEecCCCCChHHHHHHHHHHHH
Q 018479 73 STSGSSLRLLESIFREDEYLVNMQHTVIPSWYQREGYITAMANLIEK 119 (355)
Q Consensus 73 ~ttgs~~~~~~e~~~~~~~~~~~~~~~i~~~~~~p~yi~a~~~~I~~ 119 (355)
..|.-.+++.+.+++.+ ++..++.+.+|...++.-++.+++.|.+
T Consensus 81 -~~G~e~~di~~~v~~~~-~~~~~i~~g~pLl~~~~d~~~v~~al~~ 125 (127)
T cd03412 81 -IPGEEYEKLKREVDAFK-KGFKKIKLGRPLLYSPEDYEEVAAALKD 125 (127)
T ss_pred -ECcHHHHHHHHHHHHHh-CCCceEEEccCCCCCHHHHHHHHHHHHh
Confidence 34555688888776544 5677899999999999988888877654
No 29
>PRK05782 bifunctional sirohydrochlorin cobalt chelatase/precorrin-8X methylmutase; Validated
Probab=98.81 E-value=8.8e-08 Score=93.78 Aligned_cols=121 Identities=15% Similarity=0.157 Sum_probs=93.5
Q ss_pred ceEEEEeeCCCchhhhcccCCc-hHHHHHHHHHHHHHHhcccccCCceeEEEEecccCCCCCCCcHHHHHHHHHhcCCce
Q 018479 129 QVMIFFSAHGVPLAYVEEAGDP-YKAEMEECVDLIMEELEKRKITNAYTLAYQSRVGPVEWLKPYTDETIIKLGQKGVKS 207 (355)
Q Consensus 129 ~~~llfsaHgiP~~~v~~~GDp-Y~~~~~~ta~~v~e~l~~~~~~~~~~l~fQS~~G~~~Wl~P~~~d~l~~L~~~G~k~ 207 (355)
...+|+.+||.. || ....+++.++.++++.+. ++..||... .+|++.+++++|.++|+++
T Consensus 6 ~~aiLLvgHGSR--------dp~~~~~~~~La~~l~~~~~~-----~V~~aFLE~------~ePsl~eal~~l~~~G~~~ 66 (335)
T PRK05782 6 NTAIILIGHGSR--------RETFNSDMEGMANYLKEKLGV-----PIYLTYNEF------AEPNWRSLLNEIIKEGYRR 66 (335)
T ss_pred CceEEEEecCCC--------ChHHHHHHHHHHHHHHhccCC-----ceEEEEecc------CCCCHHHHHHHHHHCCCCE
Confidence 357999999992 44 488899999999876532 488999754 4799999999999999999
Q ss_pred EEEEcceecccchhhHHHHHHHHHHH-H-----Hhc-CC-ceEEEcCCCCCCHHHHHHHHHHHHHhCCCC
Q 018479 208 LLAVPISFVSEHIETLEEIDVEYKEL-A-----LKS-GI-EKWGRVPALGCEATFISDLADAVIESLPYV 269 (355)
Q Consensus 208 VvVvP~gFvsD~lETl~eid~e~~e~-a-----~~~-G~-~~~~rv~~ln~~p~fi~~La~~V~e~l~~~ 269 (355)
|+|+|+. +..-..+..||..+..+. + .++ |. .+|.+.+.|+.||.+++.|.+++.+.+...
T Consensus 67 IvVvPlF-L~~G~Hv~~DIP~~L~~~~~~~~~~~~~~~~~i~i~l~~pLG~~p~l~~ll~~Rv~eal~~~ 135 (335)
T PRK05782 67 VIIALAF-LGRGNHVFRDIMGELGVQRLNSWEVSKISGKEVEFYVTEPLSDSPLVGLALYYRLARALDAL 135 (335)
T ss_pred EEEeccc-ccCCcchhhhHHHHHHHhhhcchhhhhcCCCceeEEECCCCCCChHHHHHHHHHHHHHhhcC
Confidence 9999964 333344578988877642 1 222 21 258999999999999999999999988644
No 30
>PF01903 CbiX: CbiX; InterPro: IPR002762 Cobalamin (vitamin B12) is a structurally complex cofactor, consisting of a modified tetrapyrrole with a centrally chelated cobalt. Cobalamin is usually found in one of two biologically active forms: methylcobalamin and adocobalamin. Most prokaryotes, as well as animals, have cobalamin-dependent enzymes, whereas plants and fungi do not appear to use it. In bacteria and archaea, these include methionine synthase, ribonucleotide reductase, glutamate and methylmalonyl-CoA mutases, ethanolamine ammonia lyase, and diol dehydratase []. In mammals, cobalamin is obtained through the diet, and is required for methionine synthase and methylmalonyl-CoA mutase []. There are at least two distinct cobalamin biosynthetic pathways in bacteria []: Aerobic pathway that requires oxygen and in which cobalt is inserted late in the pathway []; found in Pseudomonas denitrificans and Rhodobacter capsulatus. Anaerobic pathway in which cobalt insertion is the first committed step towards cobalamin synthesis []; found in Salmonella typhimurium, Bacillus megaterium, and Propionibacterium freudenreichii subsp. shermanii. Either pathway can be divided into two parts: (1) corrin ring synthesis (differs in aerobic and anaerobic pathways) and (2) adenosylation of corrin ring, attachment of aminopropanol arm, and assembly of the nucleotide loop (common to both pathways) []. There are about 30 enzymes involved in either pathway, where those involved in the aerobic pathway are prefixed Cob and those of the anaerobic pathway Cbi. Several of these enzymes are pathway-specific: CbiD, CbiG, and CbiK are specific to the anaerobic route of S. typhimurium, whereas CobE, CobF, CobG, CobN, CobS, CobT, and CobW are unique to the aerobic pathway of P. denitrificans. This entry represents the CbiX protein, which functions as a cobalt-chelatase in the anaerobic biosynthesis of cobalamin. It catalyses the insertion of cobalt into sirohydrochlorin. The structure of CbiX from Archaeoglobus fulgidus consists of a central mixed beta-sheet flanked by four alpha-helices, although it is about half the size of other Class II tetrapyrrole chelatases []. The CbiX proteins found in archaea appear to be shorter than those found in eubacteria [].; GO: 0016829 lyase activity, 0046872 metal ion binding, 0009236 cobalamin biosynthetic process; PDB: 2XWQ_C 2DJ5_A 1TJN_A 2XWS_A 3LYH_B 2JH3_D.
Probab=98.79 E-value=1.6e-08 Score=82.43 Aligned_cols=100 Identities=23% Similarity=0.311 Sum_probs=80.2
Q ss_pred Cch-HHHHHHHHHHHHHHhcccccCCceeEEEEecccCCCCCCCcHHHHHHHHHhcCCceEEEEcceecccchhhHHHHH
Q 018479 149 DPY-KAEMEECVDLIMEELEKRKITNAYTLAYQSRVGPVEWLKPYTDETIIKLGQKGVKSLLAVPISFVSEHIETLEEID 227 (355)
Q Consensus 149 DpY-~~~~~~ta~~v~e~l~~~~~~~~~~l~fQS~~G~~~Wl~P~~~d~l~~L~~~G~k~VvVvP~gFvsD~lETl~eid 227 (355)
||. ...+++.++.++++++ . ++..||... .+|++.++++++.++|+++|+|+|+ |+++..-+-.||.
T Consensus 5 ~~~~~~~~~~la~~l~~~~~-~----~v~~~fle~------~~P~l~~~l~~l~~~g~~~ivvvP~-fL~~G~h~~~DIp 72 (105)
T PF01903_consen 5 DPEANAELEDLADRLRERLP-V----PVEVAFLEF------AEPSLEEALERLVAQGARRIVVVPY-FLFPGYHVKRDIP 72 (105)
T ss_dssp SCHHHHHHHHHHHHHHHHTS-S----EEEEEESSC------CCSCCHHCCHHHHCCTCSEEEEEEE-SSSSSHHHHCHHH
T ss_pred CHHHHHHHHHHHHHHHhhcC-C----eEEEEEEec------CCCCHHHHHHHHHHcCCCeEEEEee-eecCccchHhHHH
Confidence 454 7889999999999886 3 489999653 3799999999999999999999995 4455566677888
Q ss_pred HHHHHHHHhcCCceEEEcCCCCCCHHHHHHHHH
Q 018479 228 VEYKELALKSGIEKWGRVPALGCEATFISDLAD 260 (355)
Q Consensus 228 ~e~~e~a~~~G~~~~~rv~~ln~~p~fi~~La~ 260 (355)
....+.....+..++.+.++|+.||.++++|+|
T Consensus 73 ~~l~~~~~~~~~~~v~~~~pLG~~p~l~~~l~e 105 (105)
T PF01903_consen 73 EALAEARERHPGIEVRVAPPLGPHPLLAELLAE 105 (105)
T ss_dssp HHHCHHHHCSTTEEEEE---GGGSCCHHHHHH-
T ss_pred HHHHHHHhhCCceEEEECCCCCCCHHHHHHHhC
Confidence 888888777776789999999999999998875
No 31
>cd03416 CbiX_SirB_N Sirohydrochlorin cobalt chelatase (CbiX) and sirohydrochlorin iron chelatase (SirB), N-terminal domain. SirB catalyzes the ferro-chelation of sirohydrochlorin to siroheme, the prosthetic group of sulfite and nitrite reductases. CbiX is a cobaltochelatase, responsible for the chelation of Co2+ into sirohydrochlorin, an important step in the vitamin B12 biosynthetic pathway. CbiX often contains a C-terminal histidine-rich region that may be important for metal delivery and/or storage, and may also contain an iron-sulfur center. Both are found in a wide range of bacteria. This subgroup also contains single domain proteins from archaea and bacteria which may represent the ancestral form of class II chelatases before domain duplication occurred.
Probab=98.73 E-value=7.5e-08 Score=77.98 Aligned_cols=96 Identities=17% Similarity=0.166 Sum_probs=73.1
Q ss_pred cccCCCchhHHHHHHHHHHHHHHhccCCCceEEEe-eecCCCCHHHHHHHHHHcCCCEEEEeecCccccccchHHHHHHH
Q 018479 4 CFVLVLSLAIISCIQAEELRKSLWEKNLPAKVYVG-MRYWHPFTEEAIEQIKRDGITKLVVLPLYPQFSISTSGSSLRLL 82 (355)
Q Consensus 4 ~igggSPL~~~t~~qa~~l~~~L~~~~~~~~V~~a-mry~~P~i~~~l~~l~~~G~~~IvvlPlyPqyS~~ttgs~~~~~ 82 (355)
-+||||+....++ ....+.+.+.++.....|..| ++...|++++++++|.++|+++|+++|+|.. ...++.+++
T Consensus 4 lv~hGS~~~~~~~-~~~~l~~~l~~~~~~~~v~~afle~~~p~~~~~l~~l~~~g~~~v~vvPlfl~----~G~h~~~di 78 (101)
T cd03416 4 LVGHGSRDPRAAE-ALEALAERLRERLPGDEVELAFLELAEPSLAEALDELAAQGATRIVVVPLFLL----AGGHVKEDI 78 (101)
T ss_pred EEEcCCCCHHHHH-HHHHHHHHHHhhCCCCcEEEEEEEcCCCCHHHHHHHHHHcCCCEEEEEeeEeC----CCccccccH
Confidence 3689999876654 466677777665545678877 5888999999999999999999999999863 444566788
Q ss_pred HHHHHhc-cccCCceeEEecCCC
Q 018479 83 ESIFRED-EYLVNMQHTVIPSWY 104 (355)
Q Consensus 83 ~e~~~~~-~~~~~~~~~~i~~~~ 104 (355)
++.++.. ..++++++++.++++
T Consensus 79 p~~~~~~~~~~~~~~i~~~~plG 101 (101)
T cd03416 79 PAALAAARARHPGVRIRYAPPLG 101 (101)
T ss_pred HHHHHHHHHHCCCeEEEecCCCC
Confidence 7777543 346778888887754
No 32
>cd03412 CbiK_N Anaerobic cobalamin biosynthetic cobalt chelatase (CbiK), N-terminal domain. CbiK is part of the cobalt-early path for cobalamin biosynthesis. It catalyzes the insertion of cobalt into the oxidized form of precorrin-2, factor II (sirohydrochlorin), the second step of the anaerobic branch of vitamin B12 biosynthesis. CbiK belongs to the class II family of chelatases and is a homomeric enzyme that does not require ATP for its enzymatic activity.
Probab=98.70 E-value=6.4e-07 Score=76.11 Aligned_cols=119 Identities=16% Similarity=0.212 Sum_probs=90.7
Q ss_pred EEEEeeCCCchhhhcccCCch-HHHHHHHHHHHHHHhcccccCCceeEEEEeccc-----CCCCCCCcHHHHHHHHHhcC
Q 018479 131 MIFFSAHGVPLAYVEEAGDPY-KAEMEECVDLIMEELEKRKITNAYTLAYQSRVG-----PVEWLKPYTDETIIKLGQKG 204 (355)
Q Consensus 131 ~llfsaHgiP~~~v~~~GDpY-~~~~~~ta~~v~e~l~~~~~~~~~~l~fQS~~G-----~~~Wl~P~~~d~l~~L~~~G 204 (355)
+||+.+||+ .||. ...+.++++.++++.+.. ++..||-|+.- ....-.|++.++|++|.++|
T Consensus 2 aillv~fGS--------~~~~~~~~~~~i~~~l~~~~p~~----~V~~afts~~i~~~l~~~~~~~p~~~eaL~~l~~~G 69 (127)
T cd03412 2 AILLVSFGT--------SYPTAEKTIDAIEDKVRAAFPDY----EVRWAFTSRMIRKKLKKRGIEVDTPEEALAKLAADG 69 (127)
T ss_pred eEEEEeCCC--------CCHHHHHHHHHHHHHHHHHCCCC----eEEEEecHHHHHHHHHhcCCCCCCHHHHHHHHHHCC
Confidence 589999998 2444 567788888888776432 58999998541 01134699999999999999
Q ss_pred CceEEEEcceecccchhhHHHHHHHHHHHHHhcCCceEEEcCCCCCCHHHHHHHHHHHHHh
Q 018479 205 VKSLLAVPISFVSEHIETLEEIDVEYKELALKSGIEKWGRVPALGCEATFISDLADAVIES 265 (355)
Q Consensus 205 ~k~VvVvP~gFvsD~lETl~eid~e~~e~a~~~G~~~~~rv~~ln~~p~fi~~La~~V~e~ 265 (355)
+++|+|+|+-++.. .| ..||..+..+.. .+..++...+.|..+++-.+.+++.+.+.
T Consensus 70 ~~~V~V~Pl~l~~G-~e-~~di~~~v~~~~--~~~~~i~~g~pLl~~~~d~~~v~~al~~~ 126 (127)
T cd03412 70 YTEVIVQSLHIIPG-EE-YEKLKREVDAFK--KGFKKIKLGRPLLYSPEDYEEVAAALKDQ 126 (127)
T ss_pred CCEEEEEeCeeECc-HH-HHHHHHHHHHHh--CCCceEEEccCCCCCHHHHHHHHHHHHhh
Confidence 99999999866654 55 477777777654 45667999999999999888888877653
No 33
>cd03416 CbiX_SirB_N Sirohydrochlorin cobalt chelatase (CbiX) and sirohydrochlorin iron chelatase (SirB), N-terminal domain. SirB catalyzes the ferro-chelation of sirohydrochlorin to siroheme, the prosthetic group of sulfite and nitrite reductases. CbiX is a cobaltochelatase, responsible for the chelation of Co2+ into sirohydrochlorin, an important step in the vitamin B12 biosynthetic pathway. CbiX often contains a C-terminal histidine-rich region that may be important for metal delivery and/or storage, and may also contain an iron-sulfur center. Both are found in a wide range of bacteria. This subgroup also contains single domain proteins from archaea and bacteria which may represent the ancestral form of class II chelatases before domain duplication occurred.
Probab=98.65 E-value=4.8e-07 Score=73.24 Aligned_cols=100 Identities=19% Similarity=0.282 Sum_probs=75.2
Q ss_pred EEEeeCCCchhhhcccCCchHHHHHHHHHHHHHHhcccccCCceeEEEEecccCCCCCCCcHHHHHHHHHhcCCceEEEE
Q 018479 132 IFFSAHGVPLAYVEEAGDPYKAEMEECVDLIMEELEKRKITNAYTLAYQSRVGPVEWLKPYTDETIIKLGQKGVKSLLAV 211 (355)
Q Consensus 132 llfsaHgiP~~~v~~~GDpY~~~~~~ta~~v~e~l~~~~~~~~~~l~fQS~~G~~~Wl~P~~~d~l~~L~~~G~k~VvVv 211 (355)
+|+.+||.+. +.....+.+.++.++++.+.. ++..+|.+. ..|+++++++++.++|+++|+|+
T Consensus 2 ivlv~hGS~~-------~~~~~~~~~l~~~l~~~~~~~----~v~~afle~------~~p~~~~~l~~l~~~g~~~v~vv 64 (101)
T cd03416 2 LLLVGHGSRD-------PRAAEALEALAERLRERLPGD----EVELAFLEL------AEPSLAEALDELAAQGATRIVVV 64 (101)
T ss_pred EEEEEcCCCC-------HHHHHHHHHHHHHHHhhCCCC----cEEEEEEEc------CCCCHHHHHHHHHHcCCCEEEEE
Confidence 7899999832 234667888888888876422 488899763 37999999999999999999999
Q ss_pred cceecccchhhHHHHHHHHHHHHHhcCCceEEEcCCCC
Q 018479 212 PISFVSEHIETLEEIDVEYKELALKSGIEKWGRVPALG 249 (355)
Q Consensus 212 P~gFvsD~lETl~eid~e~~e~a~~~G~~~~~rv~~ln 249 (355)
|+ |+....++-.||..+.+++..+....++.+.++|+
T Consensus 65 Pl-fl~~G~h~~~dip~~~~~~~~~~~~~~i~~~~plG 101 (101)
T cd03416 65 PL-FLLAGGHVKEDIPAALAAARARHPGVRIRYAPPLG 101 (101)
T ss_pred ee-EeCCCccccccHHHHHHHHHHHCCCeEEEecCCCC
Confidence 95 44444444578888887776555555788888775
No 34
>PRK02395 hypothetical protein; Provisional
Probab=98.46 E-value=1.7e-06 Score=83.03 Aligned_cols=113 Identities=9% Similarity=-0.097 Sum_probs=83.1
Q ss_pred ccCCCchhHHHHHHHHHHHHHHhccCCCceEEEeeecCCCCHHHHHHHHHHcCCCEEEEeecCccccccchHHHHHHHHH
Q 018479 5 FVLVLSLAIISCIQAEELRKSLWEKNLPAKVYVGMRYWHPFTEEAIEQIKRDGITKLVVLPLYPQFSISTSGSSLRLLES 84 (355)
Q Consensus 5 igggSPL~~~t~~qa~~l~~~L~~~~~~~~V~~amry~~P~i~~~l~~l~~~G~~~IvvlPlyPqyS~~ttgs~~~~~~e 84 (355)
+||||+....+.+....+.+.+.++...-.|..||--..|+++++++++. .++|+++|+|.. +..+..+++++
T Consensus 141 vgHGS~~~~~a~~~~~~~a~~l~~~~~~~~V~~~fle~~P~l~~~l~~l~---~~~V~vvP~fL~----~G~H~~~DIp~ 213 (279)
T PRK02395 141 VGHGTERNENSAKAIYYHADRLRERGRFAEVEALFLDEEPEVDDWPDLFE---ADDVVVVPLFIA----DGFHTQEDIPE 213 (279)
T ss_pred EecCCCCchhHHHHHHHHHHHHHhhCCCCeEEEEeccCCCCHHHHHHHhC---CCeEEEEeeecc----cCcchHhHHHH
Confidence 68999876554444555555565443223577776558999999998874 589999999963 55566778877
Q ss_pred HHHhcc------ccC----CceeEEecCCCCChHHHHHHHHHHHHHHHhC
Q 018479 85 IFREDE------YLV----NMQHTVIPSWYQREGYITAMANLIEKELQNF 124 (355)
Q Consensus 85 ~~~~~~------~~~----~~~~~~i~~~~~~p~yi~a~~~~I~~~l~~~ 124 (355)
.+...+ .+| ++++.+.++.+.||.+.+.+++|+++++...
T Consensus 214 ~~~~~~~~~~g~~~~~~~~~~~i~~~~~LG~~p~l~~i~~~R~~ea~~~~ 263 (279)
T PRK02395 214 DMGLTDDYRTGYDVPTAVDGHRIWYAGAVGTEPLMADVILERAADAGADV 263 (279)
T ss_pred HHHHhhccccccCCCcccCCeeEEEecCCCCCHHHHHHHHHHHHHhhcCc
Confidence 654321 234 6678999999999999999999999998654
No 35
>cd03413 CbiK_C Anaerobic cobalamin biosynthetic cobalt chelatase (CbiK), C-terminal domain. CbiK is part of the cobalt-early path for cobalamin biosynthesis. It catalyzes the insertion of cobalt into the oxidized form of precorrin-2, factor II (sirohydrochlorin), the second step of the anaerobic branch of vitamin B12 biosynthesis. CbiK belongs to the class II family of chelatases, and is a homomeric enzyme that does not require ATP for its enzymatic activity.
Probab=98.38 E-value=8e-07 Score=72.86 Aligned_cols=70 Identities=20% Similarity=0.265 Sum_probs=56.8
Q ss_pred ccCCCchhHHHHHHHHHHHHHHhccCCCceEEEee-ecCCCCHHHHHHHHHHcCCCEEEEeecCccccccchHHHHHHH
Q 018479 5 FVLVLSLAIISCIQAEELRKSLWEKNLPAKVYVGM-RYWHPFTEEAIEQIKRDGITKLVVLPLYPQFSISTSGSSLRLL 82 (355)
Q Consensus 5 igggSPL~~~t~~qa~~l~~~L~~~~~~~~V~~am-ry~~P~i~~~l~~l~~~G~~~IvvlPlyPqyS~~ttgs~~~~~ 82 (355)
+|||||... + +..+.|++.+++++. ..|++|+ . +.|++++++++|.++|+++|+++|++.. ...|+.+|+
T Consensus 6 vgHGSr~~~-~-~~~~~l~~~l~~~~~-~~v~~~~lE-~~P~i~~~l~~l~~~G~~~i~lvPl~L~----~G~H~~~Di 76 (103)
T cd03413 6 MGHGTDHPS-N-AVYAALEYVLREEDP-ANVFVGTVE-GYPGLDDVLAKLKKAGIKKVTLMPLMLV----AGDHAHNDM 76 (103)
T ss_pred EECCCCchh-h-hHHHHHHHHHHhcCC-CcEEEEEEc-CCCCHHHHHHHHHHcCCCEEEEEehhhe----ecccchhcC
Confidence 799999986 4 667888888876654 5677774 6 9999999999999999999999999863 455666555
No 36
>COG4822 CbiK Cobalamin biosynthesis protein CbiK, Co2+ chelatase [Coenzyme metabolism]
Probab=98.26 E-value=0.00022 Score=65.19 Aligned_cols=194 Identities=15% Similarity=0.278 Sum_probs=123.7
Q ss_pred HHHHHHHHHcCCCEEEEeecCccccccchHHHHHHHHHHHHhccccCCceeEEecC-CCCChHHHHHHHHHHHHHHHhCC
Q 018479 47 EEAIEQIKRDGITKLVVLPLYPQFSISTSGSSLRLLESIFREDEYLVNMQHTVIPS-WYQREGYITAMANLIEKELQNFD 125 (355)
Q Consensus 47 ~~~l~~l~~~G~~~IvvlPlyPqyS~~ttgs~~~~~~e~~~~~~~~~~~~~~~i~~-~~~~p~yi~a~~~~I~~~l~~~~ 125 (355)
..||.+|+++|++++++-|++-. ..+-+-+-+.+.-+-...+- ++...+| .+-+..|- .+.+.|++.+....
T Consensus 63 ~~aL~klk~~gy~eviiQ~lhiI----pG~EyEklvr~V~~~~~dF~--~lkig~PlLy~k~DYe-~~v~aik~~~ppl~ 135 (265)
T COG4822 63 IQALNKLKDQGYEEVIIQPLHII----PGIEYEKLVREVNKYSNDFK--RLKIGRPLLYYKNDYE-ICVEAIKDQIPPLN 135 (265)
T ss_pred HHHHHHHHHccchheeeeeeeec----CchHHHHHHHHHHHHhhhhh--eeecCCceeechhhHH-HHHHHHHHhcCCcC
Confidence 47999999999999999999632 23233221122111111112 2344455 33334454 33455666554332
Q ss_pred CCCceEEEEeeCCCchhhhcccCCchHHHHHHHHHHHHHHhcccccCCceeEEEEecccCCCCCCCcHHHHHHHHHhcCC
Q 018479 126 SPEQVMIFFSAHGVPLAYVEEAGDPYKAEMEECVDLIMEELEKRKITNAYTLAYQSRVGPVEWLKPYTDETIIKLGQKGV 205 (355)
Q Consensus 126 ~~~~~~llfsaHgiP~~~v~~~GDpY~~~~~~ta~~v~e~l~~~~~~~~~~l~fQS~~G~~~Wl~P~~~d~l~~L~~~G~ 205 (355)
.+-.+||..||.-.... ..| ..-..+...-+.+ ++.++---. -|.++++|+.|.+.|+
T Consensus 136 --k~e~~vlmgHGt~h~s~----~~Y-----acLd~~~~~~~f~----~v~v~~ve~-------yP~~d~vi~~l~~~~~ 193 (265)
T COG4822 136 --KDEILVLMGHGTDHHSN----AAY-----ACLDHVLDEYGFD----NVFVAAVEG-------YPLVDTVIEYLRKNGI 193 (265)
T ss_pred --cCeEEEEEecCCCccHH----HHH-----HHHHHHHHhcCCC----ceEEEEecC-------CCcHHHHHHHHHHcCC
Confidence 33479999999832211 112 2223333332222 344443211 4999999999999999
Q ss_pred ceEEEEcceecccchhhHHHHH----HHHHHHHHhcCCceEEEcCCCCCCHHHHHHHHHHHHHhCCCCC
Q 018479 206 KSLLAVPISFVSEHIETLEEID----VEYKELALKSGIEKWGRVPALGCEATFISDLADAVIESLPYVG 270 (355)
Q Consensus 206 k~VvVvP~gFvsD~lETl~eid----~e~~e~a~~~G~~~~~rv~~ln~~p~fi~~La~~V~e~l~~~~ 270 (355)
+.|-++|.-+++..-- .-|+. ...+...+++|++.=.+..-||..|+|.+...+-++.++....
T Consensus 194 ~~v~L~PlMlvAG~Ha-~nDMasddedswk~il~~~G~~v~~~l~GLGE~~~iq~ifi~Hik~aie~~~ 261 (265)
T COG4822 194 KEVHLIPLMLVAGDHA-KNDMASDDEDSWKNILEKNGFKVEVYLHGLGENPAIQAIFIDHIKDAIERDN 261 (265)
T ss_pred ceEEEeeeEEeechhh-hhhhcccchHHHHHHHHhCCceeEEEeecCCCcHHHHHHHHHHHHHHHhhhh
Confidence 9999999988765543 46666 7789999999998777888899999999999998888776543
No 37
>PRK12435 ferrochelatase; Provisional
Probab=98.23 E-value=1.8e-05 Score=77.20 Aligned_cols=114 Identities=15% Similarity=0.257 Sum_probs=81.0
Q ss_pred ccCCchHHHHHHHHHHHHHHhccc--ccCCceeEEEEecccCCCCCCCcHHHHHHHHHhcCCceEEEEcc--eecccchh
Q 018479 146 EAGDPYKAEMEECVDLIMEELEKR--KITNAYTLAYQSRVGPVEWLKPYTDETIIKLGQKGVKSLLAVPI--SFVSEHIE 221 (355)
Q Consensus 146 ~~GDpY~~~~~~ta~~v~e~l~~~--~~~~~~~l~fQS~~G~~~Wl~P~~~d~l~~L~~~G~k~VvVvP~--gFvsD~lE 221 (355)
+.|.|-....++.+++|++.|+.. +...++.+++ |- | .|+++|+|++|.++|+++|+++|. .|.+-...
T Consensus 50 GG~SPL~~~T~~qa~~L~~~L~~~~~~~~~~V~~am--ry----~-~P~i~~~l~~l~~~g~~~iv~lpLyPqyS~~Tt~ 122 (311)
T PRK12435 50 GGISPLAKITDEQAKALEKALNEVQDEVEFKLYLGL--KH----I-EPFIEDAVEQMHNDGIEEAISIVLAPHYSTFSVK 122 (311)
T ss_pred CCcChHHHHHHHHHHHHHHHHhhccCCCCceEEEEe--cC----C-CCCHHHHHHHHHHcCCCeEEEEECCCccccccHH
Confidence 345677777788888888888532 1111233333 22 2 799999999999999999999993 45555555
Q ss_pred hHHHHHHHHHHHHHhcCCceEEEcCCCCCCHHHHHHHHHHHHHhCCCC
Q 018479 222 TLEEIDVEYKELALKSGIEKWGRVPALGCEATFISDLADAVIESLPYV 269 (355)
Q Consensus 222 Tl~eid~e~~e~a~~~G~~~~~rv~~ln~~p~fi~~La~~V~e~l~~~ 269 (355)
+..| ..++...+.+...++.+++..+||.||+++++.|++.+...
T Consensus 123 s~~~---~~~~~~~~~~~~~~~~i~~~~~~p~yi~a~a~~I~~~l~~~ 167 (311)
T PRK12435 123 SYNK---RAKEEAEKLGGPTITSIESWYDEPKFIQYWADQIKETFAQI 167 (311)
T ss_pred HHHH---HHHHHhcccCCCeEEEeCCccCChHHHHHHHHHHHHHHHHc
Confidence 5444 33444344444579999999999999999999999887544
No 38
>PRK00035 hemH ferrochelatase; Reviewed
Probab=98.16 E-value=3e-05 Score=76.07 Aligned_cols=110 Identities=19% Similarity=0.237 Sum_probs=74.0
Q ss_pred CCchHHHHHHHHHHHHHHhcccccCCceeEEEEecccCCCCCCCcHHHHHHHHHhcCCceEEEEcce-ecccc-hhhHHH
Q 018479 148 GDPYKAEMEECVDLIMEELEKRKITNAYTLAYQSRVGPVEWLKPYTDETIIKLGQKGVKSLLAVPIS-FVSEH-IETLEE 225 (355)
Q Consensus 148 GDpY~~~~~~ta~~v~e~l~~~~~~~~~~l~fQS~~G~~~Wl~P~~~d~l~~L~~~G~k~VvVvP~g-FvsD~-lETl~e 225 (355)
|.|-....++.+++|++.++..+....+..++ +. -.|+++++|++|.++|+++|+|+|.. +.+-+ ....++
T Consensus 69 gSPl~~~t~~q~~~L~~~l~~~~~~~~V~~am--~y-----~~P~i~eal~~l~~~G~~~IivlPL~p~~s~~t~gs~~~ 141 (333)
T PRK00035 69 GSPLNVITRRQAEALQAELAARGPDLPVYLGM--RY-----WNPSIEEALEALKADGVDRIVVLPLYPQYSYSTTASYFE 141 (333)
T ss_pred CChhHHHHHHHHHHHHHHHhccCCCceEEEee--cC-----CCCCHHHHHHHHHhcCCCEEEEEECCCccccccHHHHHH
Confidence 45555556777778887775322111244443 22 27999999999999999999999964 22322 122222
Q ss_pred HHHHHHHHHHhcC-CceEEEcCCCCCCHHHHHHHHHHHHHhCC
Q 018479 226 IDVEYKELALKSG-IEKWGRVPALGCEATFISDLADAVIESLP 267 (355)
Q Consensus 226 id~e~~e~a~~~G-~~~~~rv~~ln~~p~fi~~La~~V~e~l~ 267 (355)
++.+...+.. ...+..++.+.++|.+++++++.|.+.+.
T Consensus 142 ---~i~~~~~~~~~~~~i~~i~~~~~~p~~i~~l~~~I~~~~~ 181 (333)
T PRK00035 142 ---DLARALAKLRLQPEIRFIRSYYDHPGYIEALAESIREALA 181 (333)
T ss_pred ---HHHHHHHhcCCCCcEEEeCCccCCHHHHHHHHHHHHHHHH
Confidence 3333333333 34699999999999999999999998874
No 39
>PF00762 Ferrochelatase: Ferrochelatase; InterPro: IPR001015 Synonym(s): Protohaem ferro-lyase, Iron chelatase, etc. Ferrochelatase catalyses the last step in haem biosynthesis: the chelation of a ferrous ion to proto-porphyrin IX, to form protohaem [, ]. In eukaryotic cells, it binds to the mitochondrial inner membrane with its active site on the matrix side of the membrane. The X-ray structure of Bacillus subtilis and human ferrochelatase have been solved [, ]. The human enzyme exists as a homodimer. Each subunit contains one [2Fe-2S] cluster. The monomer is folded into two similar domains, each with a four-stranded parallel beta-sheet flanked by an alpha-helix in a beta-alpha-beta motif that is reminiscent of the fold found in the periplasmic binding proteins. The topological similarity between the domains suggests that they have arisen from a gene duplication event. However, significant differences exist between the two domains, including an N-terminal section (residues 80-130) that forms part of the active site pocket, and a C-terminal extension (residues 390-423) that is involved in coordination of the [2Fe-2S] cluster and in stabilisation of the homodimer. Ferrochelatase seems to have a structurally conserved core region that is common to the enzyme from bacteria, plants and mammals. Porphyrin binds in the identified cleft; this cleft also includes the metal-binding site of the enzyme. It is likely that the structure of the cleft region will have different conformations upon substrate binding and release [].; GO: 0004325 ferrochelatase activity, 0006783 heme biosynthetic process; PDB: 2QD3_B 2HRE_C 3HCN_B 2PNJ_A 2QD1_C 1HRK_A 2QD4_B 3AQI_B 2HRC_B 3HCO_B ....
Probab=98.13 E-value=3.5e-05 Score=75.29 Aligned_cols=114 Identities=19% Similarity=0.332 Sum_probs=79.3
Q ss_pred ccCCchHHHHHHHHHHHHHHhcccccCCceeEEEEecccCCCCCCCcHHHHHHHHHhcCCceEEEEcc--eecccchhhH
Q 018479 146 EAGDPYKAEMEECVDLIMEELEKRKITNAYTLAYQSRVGPVEWLKPYTDETIIKLGQKGVKSLLAVPI--SFVSEHIETL 223 (355)
Q Consensus 146 ~~GDpY~~~~~~ta~~v~e~l~~~~~~~~~~l~fQS~~G~~~Wl~P~~~d~l~~L~~~G~k~VvVvP~--gFvsD~lETl 223 (355)
+.|.|-....++.+++|++.|+..+....+..++ +.| .|++++++++|.++|+++|+|+|. -|..-...+.
T Consensus 62 g~~SPL~~~t~~qa~~l~~~L~~~~~~~~V~~am--ry~-----~P~i~~~l~~l~~~g~~~ivvlPLyPqyS~~ttgs~ 134 (316)
T PF00762_consen 62 GGGSPLNEITRRQAEALQQRLDERGVDVEVYYAM--RYG-----PPSIEDALEELKADGVDRIVVLPLYPQYSSSTTGSY 134 (316)
T ss_dssp TSSCCHHHHHHHHHHHHHHHHHHH-EEEEEEEEE--SSS-----SSBHHHHHHHHHHTT-SEEEEEESSSS--TTTHHHH
T ss_pred CCCCchHHHHHHHHHHHHHHHHhcCCCeeEEEEe--ccC-----CCCHHHHHHHHHHcCCCeEEEEeCCCchhHhhHHHH
Confidence 4578888888888999999886432111244444 222 799999999999999999999994 5666666665
Q ss_pred HHHHHHHHHHHHh-cCCceEEEcCCCCCCHHHHHHHHHHHHHhCCCC
Q 018479 224 EEIDVEYKELALK-SGIEKWGRVPALGCEATFISDLADAVIESLPYV 269 (355)
Q Consensus 224 ~eid~e~~e~a~~-~G~~~~~rv~~ln~~p~fi~~La~~V~e~l~~~ 269 (355)
.+ ++.+...+ .....++.++...+||.|++++++.|.+.+...
T Consensus 135 ~~---~~~~~~~~~~~~~~~~~i~~~~~~p~yi~a~~~~i~~~l~~~ 178 (316)
T PF00762_consen 135 LD---EVERALKKSRPNPKVRFIPSFYDHPAYIEALAERIREALERF 178 (316)
T ss_dssp HH---HHHHHHHHTHSSSEEEEE---TT-HHHHHHHHHHHHHHHTTS
T ss_pred HH---HHHHHHHhcCCCCeEEEeCCccCCHHHHHHHHHHHHHHHHhc
Confidence 55 34444333 344579999999999999999999999998876
No 40
>COG0276 HemH Protoheme ferro-lyase (ferrochelatase) [Coenzyme metabolism]
Probab=98.08 E-value=5.4e-05 Score=73.67 Aligned_cols=112 Identities=22% Similarity=0.322 Sum_probs=79.6
Q ss_pred cCCchHHHHHHHHHHHHHHhcccccCCceeEEEEecccCCCCCCCcHHHHHHHHHhcCCceEEEEcc--eecccchhhHH
Q 018479 147 AGDPYKAEMEECVDLIMEELEKRKITNAYTLAYQSRVGPVEWLKPYTDETIIKLGQKGVKSLLAVPI--SFVSEHIETLE 224 (355)
Q Consensus 147 ~GDpY~~~~~~ta~~v~e~l~~~~~~~~~~l~fQS~~G~~~Wl~P~~~d~l~~L~~~G~k~VvVvP~--gFvsD~lETl~ 224 (355)
.+.|-....++.++++.++|+... .++.+++ |. ..|++++++++|.++|+++++++|. -|.+-...+..
T Consensus 67 g~sPL~~~T~~q~~~L~~~L~~~~--~~V~~am--ry-----~~P~i~~~v~~l~~~gv~~iv~~pLyPqyS~sTt~s~~ 137 (320)
T COG0276 67 GKSPLNVITRAQAAALEERLDLPD--FKVYLAM--RY-----GPPFIEEAVEELKKDGVERIVVLPLYPQYSSSTTGSYV 137 (320)
T ss_pred CCCccHHHHHHHHHHHHHHhCCCC--ccEEEee--cC-----CCCcHHHHHHHHHHcCCCeEEEEECCcccccccHHHHH
Confidence 335666777888888888886211 1244443 22 2799999999999999999999994 34444444433
Q ss_pred HHHHHHHH-HHHhcCCceEEEcCCCCCCHHHHHHHHHHHHHhCCCCC
Q 018479 225 EIDVEYKE-LALKSGIEKWGRVPALGCEATFISDLADAVIESLPYVG 270 (355)
Q Consensus 225 eid~e~~e-~a~~~G~~~~~rv~~ln~~p~fi~~La~~V~e~l~~~~ 270 (355)
+ +..+ +.+..+...+..+++..++|.||+++++.|++.++..+
T Consensus 138 ~---~~~~al~~~~~~~~i~~I~~~~~~p~yI~a~a~~I~~~~~~~~ 181 (320)
T COG0276 138 D---ELARALKELRGQPKISTIPDYYDEPLYIEALADSIREKLAKHP 181 (320)
T ss_pred H---HHHHHHHhcCCCCceEEecCccCChHHHHHHHHHHHHHHHhcC
Confidence 3 2222 22222445799999999999999999999999988764
No 41
>COG2138 Sirohydrochlorin ferrochelatase [Inorganic ion transport and metabolism]
Probab=97.94 E-value=4e-05 Score=72.27 Aligned_cols=119 Identities=17% Similarity=0.202 Sum_probs=94.0
Q ss_pred EEEEeeCCCchhhhcccCCchHHHHHHHHHHHHHHhcccccCCceeEEEEecccCCCCCCCcHHHHHHHHHhcCCceEEE
Q 018479 131 MIFFSAHGVPLAYVEEAGDPYKAEMEECVDLIMEELEKRKITNAYTLAYQSRVGPVEWLKPYTDETIIKLGQKGVKSLLA 210 (355)
Q Consensus 131 ~llfsaHgiP~~~v~~~GDpY~~~~~~ta~~v~e~l~~~~~~~~~~l~fQS~~G~~~Wl~P~~~d~l~~L~~~G~k~VvV 210 (355)
.+|+..||.+.. .+......++..+.++...+ .+..+|.-. .+|+++++++.|..+|+++|+|
T Consensus 4 ~~llvgHGsr~p-------~~~~~~~~~a~~~~~~~~~~----~v~~~f~e~------~~P~l~~~~~al~~~G~~~ivv 66 (245)
T COG2138 4 ALLLVGHGSRLP-------RGREVAEAIAARLEERGDFP----PVRVAFLEL------AEPSLREALQALVARGVDRIVV 66 (245)
T ss_pred ceeeeecCCCCc-------cHHHHHHHHHHHHHhhcCCc----cchhHHHHh------cCCCHHHHHHHHHhcCCCeEEE
Confidence 588999999422 24667777777677765432 477888432 4799999999999999999999
Q ss_pred EcceecccchhhHHHHHHHHHHHHHhcCCceEEEcCCCCCCHHHHHHHHHHHHHhCCCCC
Q 018479 211 VPISFVSEHIETLEEIDVEYKELALKSGIEKWGRVPALGCEATFISDLADAVIESLPYVG 270 (355)
Q Consensus 211 vP~gFvsD~lETl~eid~e~~e~a~~~G~~~~~rv~~ln~~p~fi~~La~~V~e~l~~~~ 270 (355)
|| .|++.-..|..||..+......+.+...+. .++.||.+.+.+.+++.+......
T Consensus 67 VP-lfl~~g~H~~~DIP~~L~~~~~~~~~~~~~---p~G~~~~~~~~~~~r~~~~~~~~~ 122 (245)
T COG2138 67 VP-LFLAAGYHTKRDIPAELGLARQAHPQVDLS---PLGTHPAVLDLLGQRLEDAGADEA 122 (245)
T ss_pred ee-hhhccCchhhcccHHHHHHhhhcCCccccc---ccCCchHHHHHHHHHHHHhccccc
Confidence 99 677888889999999999888887754443 799999999999999988766544
No 42
>cd03413 CbiK_C Anaerobic cobalamin biosynthetic cobalt chelatase (CbiK), C-terminal domain. CbiK is part of the cobalt-early path for cobalamin biosynthesis. It catalyzes the insertion of cobalt into the oxidized form of precorrin-2, factor II (sirohydrochlorin), the second step of the anaerobic branch of vitamin B12 biosynthesis. CbiK belongs to the class II family of chelatases, and is a homomeric enzyme that does not require ATP for its enzymatic activity.
Probab=97.92 E-value=8.5e-05 Score=60.87 Aligned_cols=88 Identities=19% Similarity=0.305 Sum_probs=62.7
Q ss_pred EEEEeeCCCchhhhcccCCchHHHHHHHHHHHHHHhcccccCCceeEEEEecccCCCCCCCcHHHHHHHHHhcCCceEEE
Q 018479 131 MIFFSAHGVPLAYVEEAGDPYKAEMEECVDLIMEELEKRKITNAYTLAYQSRVGPVEWLKPYTDETIIKLGQKGVKSLLA 210 (355)
Q Consensus 131 ~llfsaHgiP~~~v~~~GDpY~~~~~~ta~~v~e~l~~~~~~~~~~l~fQS~~G~~~Wl~P~~~d~l~~L~~~G~k~VvV 210 (355)
.+||.+||.+.. .....++.++.++++.. .++.++|.- -+|+++++++++.++|+++|++
T Consensus 2 ~illvgHGSr~~--------~~~~~~~l~~~l~~~~~-----~~v~~~~lE-------~~P~i~~~l~~l~~~G~~~i~l 61 (103)
T cd03413 2 AVVFMGHGTDHP--------SNAVYAALEYVLREEDP-----ANVFVGTVE-------GYPGLDDVLAKLKKAGIKKVTL 61 (103)
T ss_pred eEEEEECCCCch--------hhhHHHHHHHHHHhcCC-----CcEEEEEEc-------CCCCHHHHHHHHHHcCCCEEEE
Confidence 489999999532 34455566666665432 147889975 2799999999999999999999
Q ss_pred Ecc-eecccchhhHHHHHHH----HHHHHHhcCCc
Q 018479 211 VPI-SFVSEHIETLEEIDVE----YKELALKSGIE 240 (355)
Q Consensus 211 vP~-gFvsD~lETl~eid~e----~~e~a~~~G~~ 240 (355)
+|. .+..+|+. .||.-+ .+...++.|.+
T Consensus 62 vPl~L~~G~H~~--~Dipge~~~SW~~~l~~~g~~ 94 (103)
T cd03413 62 MPLMLVAGDHAH--NDMAGDEPDSWKSILEAAGIK 94 (103)
T ss_pred Eehhheecccch--hcCCCCCchhHHHHHHHCCCe
Confidence 997 46777774 555443 55666666754
No 43
>TIGR00109 hemH ferrochelatase. Human ferrochelatase, found at the mitochondrial inner membrane inner surface, was shown in an active recombinant form to be a homodimer. This contrasts to an earlier finding by gel filtration that overexpressed E. coli ferrochelatase runs as a monomer.
Probab=97.89 E-value=0.00012 Score=71.60 Aligned_cols=107 Identities=21% Similarity=0.206 Sum_probs=74.5
Q ss_pred CCCchhHHHHHHHHHHHHHHhccCCCceEEEee--ecC-----CCCHHHHHHHHHHcCCCEEEEeecCccccccchHHHH
Q 018479 7 LVLSLAIISCIQAEELRKSLWEKNLPAKVYVGM--RYW-----HPFTEEAIEQIKRDGITKLVVLPLYPQFSISTSGSSL 79 (355)
Q Consensus 7 ggSPL~~~t~~qa~~l~~~L~~~~~~~~V~~am--ry~-----~P~i~~~l~~l~~~G~~~IvvlPlyPqyS~~ttgs~~ 79 (355)
-|+|-.....+.++.|.+.++.. .+ +..++ +++ .|++.++++++.++|+++|+++|. .+++-+.-
T Consensus 205 ~Gd~Y~~~~~~ta~~l~~~l~~~-~~--~~~~fQS~~g~~~Wl~P~~~~~l~~l~~~G~k~V~vvP~-----gFv~D~lE 276 (322)
T TIGR00109 205 EGDPYPAECEATTRLIAEKLGFP-NE--YRLTWQSRVGPEPWLGPYTEELLEKLGEQGVQHIVVVPI-----GFTADHLE 276 (322)
T ss_pred CCCChHHHHHHHHHHHHHHcCCC-CC--eEEEEeCCCCCCCcCCCCHHHHHHHHHHcCCceEEEECC-----cccccchh
Confidence 57787777888888888888621 23 34444 544 999999999999999999999998 23333331
Q ss_pred --HHHHHHHHhccccCCce-eEEecCCCCChHHHHHHHHHHHHHH
Q 018479 80 --RLLESIFREDEYLVNMQ-HTVIPSWYQREGYITAMANLIEKEL 121 (355)
Q Consensus 80 --~~~~e~~~~~~~~~~~~-~~~i~~~~~~p~yi~a~~~~I~~~l 121 (355)
.++.-..++.....+.+ +.+++...+||.||++++++|++.+
T Consensus 277 Tl~ei~~e~~~~~~~~G~~~~~~vp~lN~~p~fi~~l~~~v~~~~ 321 (322)
T TIGR00109 277 TLYEIDEEYREVAEDAGGDKYQRCPALNAKPEFIEAMATLVKKKL 321 (322)
T ss_pred HHHhhhHHHHHHHHHcCCCeEEECCCCCCCHHHHHHHHHHHHHhh
Confidence 12221111111112344 8999999999999999999998864
No 44
>PLN02449 ferrochelatase
Probab=97.82 E-value=0.00025 Score=72.75 Aligned_cols=111 Identities=15% Similarity=0.223 Sum_probs=78.5
Q ss_pred CCchhHHHHHHHHHHHHHHhccCCCceEEEee--ecC-----CCCHHHHHHHHHHcCCCEEEEeecCccccccchHHH--
Q 018479 8 VLSLAIISCIQAEELRKSLWEKNLPAKVYVGM--RYW-----HPFTEEAIEQIKRDGITKLVVLPLYPQFSISTSGSS-- 78 (355)
Q Consensus 8 gSPL~~~t~~qa~~l~~~L~~~~~~~~V~~am--ry~-----~P~i~~~l~~l~~~G~~~IvvlPlyPqyS~~ttgs~-- 78 (355)
|.|=...+++-+++|.+.|..++...++..++ |++ .|+++++++++.++|+++|+++|.. +.+-+.
T Consensus 295 GDpY~~q~~~ta~lI~~~L~~~~~~~~~~layQSR~Gp~eWL~P~t~d~L~~L~~~Gvk~VlvvPig-----FvSDhiET 369 (485)
T PLN02449 295 GDPYKAQMEECVDLIMEELKARGILNRHTLAYQSRVGPVEWLKPYTDETIVELGKKGVKSLLAVPIS-----FVSEHIET 369 (485)
T ss_pred CCChHHHHHHHHHHHHHHhCCCCCCCCeEEEEeCCCCCCCCCCCCHHHHHHHHHHcCCCeEEEECCc-----ccccchHH
Confidence 56667777888888988887544112334444 455 8999999999999999999999983 444443
Q ss_pred HHHHHHHHHhccccCCc-eeEEecCCCCChHHHHHHHHHHHHHHHh
Q 018479 79 LRLLESIFREDEYLVNM-QHTVIPSWYQREGYITAMANLIEKELQN 123 (355)
Q Consensus 79 ~~~~~e~~~~~~~~~~~-~~~~i~~~~~~p~yi~a~~~~I~~~l~~ 123 (355)
+.++.-..++.....++ .+.+++...++|.||+++++.|.+.+..
T Consensus 370 L~EiDiE~re~a~e~G~~~~~rVP~LN~~p~FI~~La~lV~~~l~~ 415 (485)
T PLN02449 370 LEEIDMEYRELALESGIENWGRVPALGCEPTFISDLADAVIEALPY 415 (485)
T ss_pred HHHHHHHHHHHHHHcCCceEEEcCCCCCCHHHHHHHHHHHHHHhhc
Confidence 22232222221111233 5899999999999999999999998863
No 45
>PF00504 Chloroa_b-bind: Chlorophyll A-B binding protein; InterPro: IPR022796 The light-harvesting complex (LHC) consists of chlorophylls A and B and the chlorophyll A-B binding protein. LHC functions as a light receptor that captures and delivers excitation energy to photosystems I and II with which it is closely associated. Under changing light conditions, the reversible phosphorylation of light harvesting chlorophyll a/b binding proteins (LHCII) represents a system for balancing the excitation energy between the two photosystems []. The N terminus of the chlorophyll A-B binding protein extends into the stroma where it is involved with adhesion of granal membranes and photo-regulated by reversible phosphorylation of its threonine residues []. Both these processes are believed to mediate the distribution of excitation energy between photosystems I and II. This family also includes the photosystem II protein PsbS, which plays a role in energy-dependent quenching that increases thermal dissipation of excess absorbed light energy in the photosystem [].; PDB: 2O01_2 2WSF_2 2WSC_2 3LW5_2 2WSE_2 1RWT_D 2BHW_C 1VCR_A.
Probab=97.56 E-value=3.8e-05 Score=67.29 Aligned_cols=29 Identities=38% Similarity=0.293 Sum_probs=25.1
Q ss_pred cccCCCcchhhhhhhHHHHHHHHHHHHHH
Q 018479 309 VWEWGWTRSAETWNGRAAMLAVLVLLVLE 337 (355)
Q Consensus 309 ~~~~g~~~~~e~~ngr~am~g~~~~~~~e 337 (355)
+..+.+++.+|++|||+||+||+..++.|
T Consensus 127 ~~~~~~~~~~El~NGRlAMla~~g~~~~e 155 (156)
T PF00504_consen 127 PEEKEFMQLAELKNGRLAMLAFAGFVAQE 155 (156)
T ss_dssp CHSHHCHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred hhhhHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 34566788999999999999999999877
No 46
>PF06180 CbiK: Cobalt chelatase (CbiK); InterPro: IPR010388 This group, typified by Salmonella typhimurium CbiK, contains anaerobic cobalt chelatases that act in the anaerobic cobalamin biosynthesis pathway [, ]. Cobalamin (vitamin B12) can be complexed with metal via ATP-dependent reactions (aerobic pathway) (e.g., in Pseudomonas denitrificans) or via ATP-independent reactions (anaerobic pathway) (e.g., in S. typhimurium) [, ]. The corresponding cobalt chelatases are not homologous. This group belongs to the class of ATP-independent, single-subunit chelatases that also includes distantly related protoporphyrin IX (PPIX) ferrochelatase (HemH) (Class II chelatases) []. The structure of S. typhimurium CbiK shows that it has a remarkably similar topology to Bacillus subtilis ferrochelatase despite only weak sequence conservation []. Both enzymes contain a histidine residue identified as the metal ion ligand, but CbiK contains a second histidine in place of the glutamic acid residue identified as a general base in PPIX ferrochelatase []. Site-directed mutagenesis has confirmed a role for this histidine and a nearby glutamic acid in cobalt binding, modulating metal ion specificity as well as catalytic efficiency []. It should be noted that CysG and Met8p, which are multifunctional proteins associated with siroheme biosynthesis, include chelatase activity and can therefore be considered as the third class of chelatases []. As with the class II chelatases, they do not require ATP for activity. However, they are not structurally similar to HemH or CbiK, and it is likely that they have arisen by the acquisition of a chelatase function within a dehydrogenase catalytic framework [, ].; GO: 0016852 sirohydrochlorin cobaltochelatase activity; PDB: 1QGO_A 2XWP_A 2XVZ_A 2XVX_A 2XVY_A.
Probab=97.52 E-value=0.00041 Score=66.07 Aligned_cols=107 Identities=15% Similarity=0.194 Sum_probs=72.6
Q ss_pred ccCCCchhHHHHHHHHHHHHHHhccCCCceEEEeeecCCCCHHHHHHHHHHcCCCEEEEeecCccccccchHHHHHHH--
Q 018479 5 FVLVLSLAIISCIQAEELRKSLWEKNLPAKVYVGMRYWHPFTEEAIEQIKRDGITKLVVLPLYPQFSISTSGSSLRLL-- 82 (355)
Q Consensus 5 igggSPL~~~t~~qa~~l~~~L~~~~~~~~V~~amry~~P~i~~~l~~l~~~G~~~IvvlPlyPqyS~~ttgs~~~~~-- 82 (355)
+|||||..... .-..|+..|.+.+. -.|++|.-=+.|++++++++|++.|++++.++||+.. .--|+.+|+
T Consensus 147 mGHGt~h~an~--~Y~~l~~~l~~~~~-~~v~vgtvEG~P~~~~vi~~L~~~g~k~V~L~PlMlV----AGdHa~nDmaG 219 (262)
T PF06180_consen 147 MGHGTPHPANA--AYSALQAMLKKHGY-PNVFVGTVEGYPSLEDVIARLKKKGIKKVHLIPLMLV----AGDHAKNDMAG 219 (262)
T ss_dssp EE---SCHHHH--HHHHHHHHHHCCT--TTEEEEETTSSSBHHHHHHHHHHHT-SEEEEEEESSS------HHHHCCCCS
T ss_pred EeCCCCCCccH--HHHHHHHHHHhCCC-CeEEEEEeCCCCCHHHHHHHHHhcCCCeEEEEecccc----cchhhhhhhcC
Confidence 79999987543 46788999987541 2488998778999999999999999999999999753 444555554
Q ss_pred ------HHHHHhccccCCcee-EEecCCCCChHHHHHHHHHHHHHHH
Q 018479 83 ------ESIFREDEYLVNMQH-TVIPSWYQREGYITAMANLIEKELQ 122 (355)
Q Consensus 83 ------~e~~~~~~~~~~~~~-~~i~~~~~~p~yi~a~~~~I~~~l~ 122 (355)
...+++. ++++ .+++..+..|.+.+.|.++|+++++
T Consensus 220 de~dSWks~L~~~----G~~v~~~l~GLGE~~~i~~ifi~hl~~ai~ 262 (262)
T PF06180_consen 220 DEEDSWKSRLEAA----GFEVTCVLKGLGEYPAIQQIFIEHLKEAIE 262 (262)
T ss_dssp SSTTSHHHHHHHT----T-EEEE----GGGSHHHHHHHHHHHHHHH-
T ss_pred CCcchHHHHHHHC----CCEEEEEeccCcCCHHHHHHHHHHHHHHhC
Confidence 2233322 2233 3578899999999999999999863
No 47
>PF00504 Chloroa_b-bind: Chlorophyll A-B binding protein; InterPro: IPR022796 The light-harvesting complex (LHC) consists of chlorophylls A and B and the chlorophyll A-B binding protein. LHC functions as a light receptor that captures and delivers excitation energy to photosystems I and II with which it is closely associated. Under changing light conditions, the reversible phosphorylation of light harvesting chlorophyll a/b binding proteins (LHCII) represents a system for balancing the excitation energy between the two photosystems []. The N terminus of the chlorophyll A-B binding protein extends into the stroma where it is involved with adhesion of granal membranes and photo-regulated by reversible phosphorylation of its threonine residues []. Both these processes are believed to mediate the distribution of excitation energy between photosystems I and II. This family also includes the photosystem II protein PsbS, which plays a role in energy-dependent quenching that increases thermal dissipation of excess absorbed light energy in the photosystem [].; PDB: 2O01_2 2WSF_2 2WSC_2 3LW5_2 2WSE_2 1RWT_D 2BHW_C 1VCR_A.
Probab=97.50 E-value=2.9e-05 Score=68.02 Aligned_cols=33 Identities=45% Similarity=0.610 Sum_probs=29.8
Q ss_pred cCCCcchhhhhhhHHHHHHHHHHHHHHHHhCcc
Q 018479 311 EWGWTRSAETWNGRAAMLAVLVLLVLEVTTGEG 343 (355)
Q Consensus 311 ~~g~~~~~e~~ngr~am~g~~~~~~~e~~~g~~ 343 (355)
.++|...+|++|||+||+||+..++.|+.++.+
T Consensus 25 ~~~~~R~aEl~hGR~AMLa~~g~~v~e~~~~~~ 57 (156)
T PF00504_consen 25 DFAWYREAELKHGRVAMLAFVGALVQEAGTGFP 57 (156)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHCHCHSTTT
T ss_pred hHHHHHHhHHHhhhhhhhhhHHHHHHHHhccCC
Confidence 566778899999999999999999999998854
No 48
>PLN00147 light-harvesting complex I chlorophyll-a/b binding protein Lhca5; Provisional
Probab=97.24 E-value=0.00024 Score=67.04 Aligned_cols=33 Identities=33% Similarity=0.320 Sum_probs=30.7
Q ss_pred hhhhhhhHHHHHHHHHHHHHHHHhCcchhhhhc
Q 018479 317 SAETWNGRAAMLAVLVLLVLEVTTGEGFLHQWG 349 (355)
Q Consensus 317 ~~e~~ngr~am~g~~~~~~~e~~~g~~~~~~~~ 349 (355)
..|+-|||+||++|+..++.|++||+|++.++.
T Consensus 202 ~kEikNGRLAMlA~~G~~~q~~vtg~Gp~~nL~ 234 (252)
T PLN00147 202 LKEIKNGRLAMVAMLGFFVQASVTHTGPIDNLL 234 (252)
T ss_pred HHHHHHhHHHHHHHHHHHHHHHhcCCChHHHHH
Confidence 479999999999999999999999999998874
No 49
>PLN00100 light-harvesting complex chlorophyll-a/b protein of photosystem I (Lhca); Provisional
Probab=97.23 E-value=0.00019 Score=67.30 Aligned_cols=34 Identities=35% Similarity=0.331 Sum_probs=31.8
Q ss_pred hhhhhhhHHHHHHHHHHHHHHHHhCcchhhhhcc
Q 018479 317 SAETWNGRAAMLAVLVLLVLEVTTGEGFLHQWGI 350 (355)
Q Consensus 317 ~~e~~ngr~am~g~~~~~~~e~~~g~~~~~~~~~ 350 (355)
..|+-|||+||++|+..+..+.+||+|.+++++.
T Consensus 162 ~KEIkNGRLAMlA~lG~~~Q~~vTG~gPlenL~~ 195 (246)
T PLN00100 162 VKEVKNGRLAMLAFLGMVSQYAVTGKSPLEGLKA 195 (246)
T ss_pred HHHHhhhhHHHHHHHHHhhhhhhcCCChHHHHHH
Confidence 4899999999999999999999999999998864
No 50
>PLN00089 fucoxanthin-chlorophyll a/c binding protein; Provisional
Probab=97.16 E-value=0.0003 Score=64.74 Aligned_cols=30 Identities=37% Similarity=0.386 Sum_probs=27.6
Q ss_pred hhhhhhhHHHHHHHHHHHHHHHHhCcchhh
Q 018479 317 SAETWNGRAAMLAVLVLLVLEVTTGEGFLH 346 (355)
Q Consensus 317 ~~e~~ngr~am~g~~~~~~~e~~~g~~~~~ 346 (355)
..|+-|||+||+|++..+..|++||+|++.
T Consensus 179 ~~El~NGRlAM~a~~g~~~~~~~tg~g~~~ 208 (209)
T PLN00089 179 DKELKNGRLAMVAIGGIATGSAITGHGFPY 208 (209)
T ss_pred HHHHhhhHHHHHHHHHHHHHHHHcCCCCCc
Confidence 479999999999999999999999999863
No 51
>KOG1321 consensus Protoheme ferro-lyase (ferrochelatase) [Coenzyme transport and metabolism]
Probab=97.06 E-value=0.0055 Score=59.19 Aligned_cols=118 Identities=16% Similarity=0.294 Sum_probs=82.5
Q ss_pred ccCCchHHHHHHHHHHHHHHhcccc---cCCceeEEEEecccCCCCCCCcHHHHHHHHHhcCCceEEEEc--ceecccch
Q 018479 146 EAGDPYKAEMEECVDLIMEELEKRK---ITNAYTLAYQSRVGPVEWLKPYTDETIIKLGQKGVKSLLAVP--ISFVSEHI 220 (355)
Q Consensus 146 ~~GDpY~~~~~~ta~~v~e~l~~~~---~~~~~~l~fQS~~G~~~Wl~P~~~d~l~~L~~~G~k~VvVvP--~gFvsD~l 220 (355)
+.|.|-....+..+..+.+.|.... .++.+.++|-- ..|-|+++++++.+.|++++|++| |.|-+-..
T Consensus 99 GGGSPir~wT~~Q~~~m~k~Ld~~~petaphk~YVgfRY-------~~PlTEea~~qikkd~v~r~VafsqYPQyS~sTs 171 (395)
T KOG1321|consen 99 GGGSPIRKWTEYQAEEMCKILDKKCPETAPHKPYVGFRY-------AHPLTEEALEQIKKDGVTRAVAFSQYPQYSCSTS 171 (395)
T ss_pred cCCCchhHHHHHHHHHHHHHHHhcCcccCCccceeeeee-------cCcccHHHHHHHHhcCceeEEeeccCCceeeecC
Confidence 4566655555555555555553221 34557777743 379999999999999999999998 22321111
Q ss_pred -hhHHHHHHHHHHHHHhcCCceEEEcCCCCCCHHHHHHHHHHHHHhCCCCCc
Q 018479 221 -ETLEEIDVEYKELALKSGIEKWGRVPALGCEATFISDLADAVIESLPYVGA 271 (355)
Q Consensus 221 -ETl~eid~e~~e~a~~~G~~~~~rv~~ln~~p~fi~~La~~V~e~l~~~~~ 271 (355)
-.|-+|-..+++.-.+.+++ +..++....++.+|.++|+.|.+.|+....
T Consensus 172 GSSln~l~r~~r~~~~~~~~~-wsiIdrW~t~~glIkafA~~I~keL~~F~~ 222 (395)
T KOG1321|consen 172 GSSLNELWRQFREDGYERDIK-WSIIDRWPTREGLIKAFAENIEKELQTFPE 222 (395)
T ss_pred cccHHHHHHHHHhcCcccCCc-eEeeccccccchHHHHHHHHHHHHHHhcCC
Confidence 11444444677776677775 899999999999999999999999887644
No 52
>PLN00099 light-harvesting complex IChlorophyll A-B binding protein Lhca1; Provisional
Probab=96.94 E-value=0.00059 Score=64.06 Aligned_cols=33 Identities=33% Similarity=0.392 Sum_probs=29.5
Q ss_pred hhhhhhhHHHHHHHHHHHHHH-HHhCcchhhhhc
Q 018479 317 SAETWNGRAAMLAVLVLLVLE-VTTGEGFLHQWG 349 (355)
Q Consensus 317 ~~e~~ngr~am~g~~~~~~~e-~~~g~~~~~~~~ 349 (355)
..|+-|||+||++|+..++.| .+||+|++.++.
T Consensus 188 ~kELkNGRLAMiA~lGf~vQ~~~~~G~gPl~nL~ 221 (243)
T PLN00099 188 VKEIKNGRLALLAFVGFCVQQSAYPGTGPLENLA 221 (243)
T ss_pred HHHHHhhHHHHHHHHHHHHhhhhcCCCChHHHHH
Confidence 479999999999999999998 579999999874
No 53
>PLN00025 photosystem II light harvesting chlorophyll a/b binding protein; Provisional
Probab=96.90 E-value=0.00062 Score=64.56 Aligned_cols=33 Identities=33% Similarity=0.496 Sum_probs=30.9
Q ss_pred hhhhhhhHHHHHHHHHHHHHHHHhCcchhhhhc
Q 018479 317 SAETWNGRAAMLAVLVLLVLEVTTGEGFLHQWG 349 (355)
Q Consensus 317 ~~e~~ngr~am~g~~~~~~~e~~~g~~~~~~~~ 349 (355)
..|+-|||+||++|+..++.+++||+|.++++.
T Consensus 208 ~kEikNGRLAMlA~~G~~~q~~vTG~GPlenL~ 240 (262)
T PLN00025 208 VKEIKNGRLAMFSMFGFFVQAIVTGKGPLENLA 240 (262)
T ss_pred HHHHhhhhHHHHHHHHHhhhhhhcCCChHHHHH
Confidence 589999999999999999999999999998864
No 54
>PLN00120 fucoxanthin-chlorophyll a-c binding protein; Provisional
Probab=96.89 E-value=0.00086 Score=61.46 Aligned_cols=26 Identities=38% Similarity=0.432 Sum_probs=24.3
Q ss_pred hhhhhhhHHHHHHHHHHHHHHHHhCc
Q 018479 317 SAETWNGRAAMLAVLVLLVLEVTTGE 342 (355)
Q Consensus 317 ~~e~~ngr~am~g~~~~~~~e~~~g~ 342 (355)
..|+-|||+|||||...+.-|+++|.
T Consensus 170 ~~EL~NGRLAMiai~G~~~qe~l~g~ 195 (202)
T PLN00120 170 AIELNQGRAAQMGILALMVHEQLGVE 195 (202)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHccCC
Confidence 47999999999999999999999986
No 55
>PLN00048 photosystem I light harvesting chlorophyll a/b binding protein 3; Provisional
Probab=96.87 E-value=0.00061 Score=64.69 Aligned_cols=32 Identities=31% Similarity=0.366 Sum_probs=28.7
Q ss_pred chhhhhhhHHHHHHHHHHHHHHHHhCcchhhh
Q 018479 316 RSAETWNGRAAMLAVLVLLVLEVTTGEGFLHQ 347 (355)
Q Consensus 316 ~~~e~~ngr~am~g~~~~~~~e~~~g~~~~~~ 347 (355)
..+|+.|||+||+|++..++.|++++.|++.+
T Consensus 86 r~aEL~hGR~AMLa~~G~lv~Ell~~~g~~~~ 117 (262)
T PLN00048 86 AYGEVINGRFAMLGAAGAIAPEILGKAGLIPQ 117 (262)
T ss_pred HHHHhhcchHHHHHHhhHHHHHHhccCCcccc
Confidence 36899999999999999999999998888653
No 56
>cd03411 Ferrochelatase_N Ferrochelatase, N-terminal domain: Ferrochelatase (protoheme ferrolyase or HemH) is the terminal enzyme of the heme biosynthetic pathway. It catalyzes the insertion of ferrous iron into the protoporphyrin IX ring yielding protoheme. This enzyme is ubiquitous in nature and widely distributed in bacteria and eukaryotes. Recently, some archaeal members have been identified. The oligomeric state of these enzymes varies depending on the presence of a dimerization motif at the C-terminus.
Probab=96.85 E-value=0.011 Score=52.04 Aligned_cols=94 Identities=16% Similarity=0.247 Sum_probs=57.6
Q ss_pred cCCchHHHHHHHHHHHHHHhcccccCCceeEEEEecccCCCCCCCcHHHHHHHHHhcCCceEEEEcc--eecccchhhHH
Q 018479 147 AGDPYKAEMEECVDLIMEELEKRKITNAYTLAYQSRVGPVEWLKPYTDETIIKLGQKGVKSLLAVPI--SFVSEHIETLE 224 (355)
Q Consensus 147 ~GDpY~~~~~~ta~~v~e~l~~~~~~~~~~l~fQS~~G~~~Wl~P~~~d~l~~L~~~G~k~VvVvP~--gFvsD~lETl~ 224 (355)
.|.|-....++.+++|+++|+..+....+..+++ . | .|+++|+++++.++|+++|+|+|. .|.+-......
T Consensus 62 ~~SPL~~~t~~q~~~l~~~L~~~~~~~~v~~amr--y----~-~P~i~~~l~~l~~~g~~~iivlPl~P~~S~~Tt~s~~ 134 (159)
T cd03411 62 GGSPLNEITRAQAEALEKALDERGIDVKVYLAMR--Y----G-PPSIEEALEELKADGVDRIVVLPLYPQYSASTTGSYL 134 (159)
T ss_pred CCCccHHHHHHHHHHHHHHHhccCCCcEEEehHh--c----C-CCCHHHHHHHHHHcCCCEEEEEECCcccccccHHHHH
Confidence 3566666677788888888754211112333322 1 2 799999999999999999999995 45555555444
Q ss_pred HHHHHHHHHHHhcC-CceEEEcCCCCC
Q 018479 225 EIDVEYKELALKSG-IEKWGRVPALGC 250 (355)
Q Consensus 225 eid~e~~e~a~~~G-~~~~~rv~~ln~ 250 (355)
| +..+...+.+ ...++.++...+
T Consensus 135 ~---~~~~~~~~~~~~~~~~~i~~~~~ 158 (159)
T cd03411 135 D---EVERALKKLRPAPELRVIRSFYD 158 (159)
T ss_pred H---HHHHHHHhcCCCCcEEEeCcccc
Confidence 4 3333333322 234666665443
No 57
>PLN00101 Photosystem I light-harvesting complex type 4 protein; Provisional
Probab=96.82 E-value=0.00053 Score=64.56 Aligned_cols=33 Identities=39% Similarity=0.417 Sum_probs=30.8
Q ss_pred hhhhhhhHHHHHHHHHHHHHHHHhCcchhhhhc
Q 018479 317 SAETWNGRAAMLAVLVLLVLEVTTGEGFLHQWG 349 (355)
Q Consensus 317 ~~e~~ngr~am~g~~~~~~~e~~~g~~~~~~~~ 349 (355)
..|+-|||+||++|+..++.+++||+|.++++.
T Consensus 202 ~kEIKNGRLAM~A~lGf~~Q~~vTG~gPi~nL~ 234 (250)
T PLN00101 202 EKELANGRLAMLAFLGFVVQHNVTGKGPFENLL 234 (250)
T ss_pred HHHHhhcchHHHHHhhHhheehccCCChHHHHH
Confidence 489999999999999999999999999998874
No 58
>PLN00048 photosystem I light harvesting chlorophyll a/b binding protein 3; Provisional
Probab=96.81 E-value=0.00078 Score=63.96 Aligned_cols=33 Identities=36% Similarity=0.430 Sum_probs=30.8
Q ss_pred hhhhhhhHHHHHHHHHHHHHHHHhCcchhhhhc
Q 018479 317 SAETWNGRAAMLAVLVLLVLEVTTGEGFLHQWG 349 (355)
Q Consensus 317 ~~e~~ngr~am~g~~~~~~~e~~~g~~~~~~~~ 349 (355)
..|+-|||+||++++..++.+++||+|.+.++.
T Consensus 212 ~~EiknGRLAM~A~~G~~~q~~~tg~gp~~~L~ 244 (262)
T PLN00048 212 LKEVKNGRLAMLAILGYFIQALVTGVGPFQNLL 244 (262)
T ss_pred HHHHhhhHHHHHHhhhHhhhhhhcCCCHHHHHH
Confidence 489999999999999999999999999998863
No 59
>PLN00171 photosystem light-harvesting complex -chlorophyll a/b binding protein Lhcb7; Provisional
Probab=96.74 E-value=0.0011 Score=64.38 Aligned_cols=32 Identities=34% Similarity=0.401 Sum_probs=29.9
Q ss_pred hhhhhhHHHHHHHHHHHHHHHHhCcchhhhhc
Q 018479 318 AETWNGRAAMLAVLVLLVLEVTTGEGFLHQWG 349 (355)
Q Consensus 318 ~e~~ngr~am~g~~~~~~~e~~~g~~~~~~~~ 349 (355)
.|+-|||+||+||+..++.+.+||+|.+.++.
T Consensus 276 kELkNGRLAM~A~lG~~vq~~vTG~GPlenL~ 307 (324)
T PLN00171 276 KEIKNGRLAMVAWLGFYIQAAVTGKGPVQNLV 307 (324)
T ss_pred HHHhhhHHHHHHHHHHHHhHhhcCCChHHHHH
Confidence 59999999999999999999999999998863
No 60
>PLN00097 photosystem I light harvesting complex Lhca2/4, chlorophyll a/b binding; Provisional
Probab=96.74 E-value=0.00099 Score=62.51 Aligned_cols=33 Identities=36% Similarity=0.326 Sum_probs=30.9
Q ss_pred hhhhhhhHHHHHHHHHHHHHHHHhCcchhhhhc
Q 018479 317 SAETWNGRAAMLAVLVLLVLEVTTGEGFLHQWG 349 (355)
Q Consensus 317 ~~e~~ngr~am~g~~~~~~~e~~~g~~~~~~~~ 349 (355)
.+|+-|||+||++|+..++.+.+||+|.++++.
T Consensus 199 ~kEiknGRLAM~A~~G~~~q~~vTGkGPl~nL~ 231 (244)
T PLN00097 199 LKEIANGRLAMLAFLGCCAQAIQTGTGPVDNLF 231 (244)
T ss_pred HHHHHhhHHHHHHHHHHhhhhhccCCCHHHHHH
Confidence 489999999999999999999999999998874
No 61
>PLN00098 light-harvesting complex I chlorophyll a/b-binding protein (Lhac); Provisional
Probab=96.74 E-value=0.0011 Score=63.04 Aligned_cols=33 Identities=39% Similarity=0.424 Sum_probs=30.9
Q ss_pred hhhhhhhHHHHHHHHHHHHHHHHhCcchhhhhc
Q 018479 317 SAETWNGRAAMLAVLVLLVLEVTTGEGFLHQWG 349 (355)
Q Consensus 317 ~~e~~ngr~am~g~~~~~~~e~~~g~~~~~~~~ 349 (355)
..|+-|||+||++++..++.+.+||+|+++++.
T Consensus 217 ~kEikNGRLAM~A~~G~~~q~~vTG~gPl~nL~ 249 (267)
T PLN00098 217 TKEIKNGRLAMLAFVGFCFQAVYTGEGPIENLM 249 (267)
T ss_pred HHHHhhhHHHHHHHHHHHHhhhhcCCChHHHHH
Confidence 489999999999999999999999999999874
No 62
>PLN00187 photosystem II light-harvesting complex II protein Lhcb4; Provisional
Probab=96.70 E-value=0.0013 Score=63.12 Aligned_cols=33 Identities=39% Similarity=0.543 Sum_probs=30.5
Q ss_pred hhhhhhhHHHHHHHHHHHHHHHHhCcchhhhhc
Q 018479 317 SAETWNGRAAMLAVLVLLVLEVTTGEGFLHQWG 349 (355)
Q Consensus 317 ~~e~~ngr~am~g~~~~~~~e~~~g~~~~~~~~ 349 (355)
..|+-|||+||++++..++.+.+||+|.++.+.
T Consensus 237 ~kEIkNGRLAMlA~lG~~vq~~vtg~GPi~nL~ 269 (286)
T PLN00187 237 LAEIKHARLAMVAFLGFAVQAAATGKGPLNNWA 269 (286)
T ss_pred HHHHhhhHHHHHHHHHHHHHHHhcCCChHHHHH
Confidence 589999999999999999999999999988763
No 63
>PLN00101 Photosystem I light-harvesting complex type 4 protein; Provisional
Probab=96.63 E-value=0.0012 Score=62.19 Aligned_cols=30 Identities=47% Similarity=0.469 Sum_probs=27.7
Q ss_pred chhhhhhhHHHHHHHHHHHHHHHHhCcchh
Q 018479 316 RSAETWNGRAAMLAVLVLLVLEVTTGEGFL 345 (355)
Q Consensus 316 ~~~e~~ngr~am~g~~~~~~~e~~~g~~~~ 345 (355)
..+|+.|||+||+|++..++.|++|+.|++
T Consensus 92 r~aEl~hGRlAMla~~G~l~~e~l~~~g~~ 121 (250)
T PLN00101 92 VQAELVNGRWAMLGVAGMLLPEVFTKIGII 121 (250)
T ss_pred HHHHHhcccHHHHHHHHHHHHHHhcCCCCc
Confidence 358999999999999999999999998876
No 64
>cd00419 Ferrochelatase_C Ferrochelatase, C-terminal domain: Ferrochelatase (protoheme ferrolyase or HemH) is the terminal enzyme of the heme biosynthetic pathway. It catalyzes the insertion of ferrous iron into the protoporphyrin IX ring yielding protoheme. This enzyme is ubiquitous in nature and widely distributed in bacteria and eukaryotes. Recently, some archaeal members have been identified. The oligomeric state of these enzymes varies depending on the presence of a dimerization motif at the C-terminus.
Probab=96.60 E-value=0.028 Score=48.22 Aligned_cols=85 Identities=19% Similarity=0.258 Sum_probs=50.4
Q ss_pred hHHHHHHHHHHHHHHhccCCCceEEEeee--c-----CCCCHHHHHHHHHHcCCCEEEEeec-CccccccchHHHHHHHH
Q 018479 12 AIISCIQAEELRKSLWEKNLPAKVYVGMR--Y-----WHPFTEEAIEQIKRDGITKLVVLPL-YPQFSISTSGSSLRLLE 83 (355)
Q Consensus 12 ~~~t~~qa~~l~~~L~~~~~~~~V~~amr--y-----~~P~i~~~l~~l~~~G~~~IvvlPl-yPqyS~~ttgs~~~~~~ 83 (355)
...+.+.+++|++.|... .-++..++. . -.|++.++++++.++|+++|+++|. |.- ..-..+.+++
T Consensus 40 ~~~~~~~~~~v~~~l~~~--~~~~~~~fqS~~g~~~Wl~P~~~~~l~~l~~~G~~~i~v~p~gF~~----D~~Etl~di~ 113 (135)
T cd00419 40 PDQCEETARLVAERLGLP--FDEYELAYQSRFGPGEWLEPSTDDALEELAKEGVKNVVVVPIGFVS----DHLETLYELD 113 (135)
T ss_pred HHHHHHHHHHHHHHhCCC--CCCEEEEecCCCCCCCCCCCCHHHHHHHHHHcCCCeEEEECCcccc----ccHHHHHHHH
Confidence 444555666676666521 223455542 2 2999999999999999999999999 531 2223344554
Q ss_pred HHHHhc-cccCCceeEEecC
Q 018479 84 SIFRED-EYLVNMQHTVIPS 102 (355)
Q Consensus 84 e~~~~~-~~~~~~~~~~i~~ 102 (355)
...++. .......+.+++.
T Consensus 114 ~e~~~~~~~~G~~~~~rvp~ 133 (135)
T cd00419 114 IEYRELAEEAGGENYRRVPC 133 (135)
T ss_pred HHHHHHHHHcCCceEEEcCC
Confidence 444322 1222244555543
No 65
>PLN00098 light-harvesting complex I chlorophyll a/b-binding protein (Lhac); Provisional
Probab=96.21 E-value=0.0032 Score=59.92 Aligned_cols=31 Identities=39% Similarity=0.440 Sum_probs=27.8
Q ss_pred chhhhhhhHHHHHHHHHHHHHHHHhCcchhh
Q 018479 316 RSAETWNGRAAMLAVLVLLVLEVTTGEGFLH 346 (355)
Q Consensus 316 ~~~e~~ngr~am~g~~~~~~~e~~~g~~~~~ 346 (355)
..+|+.|||+||+|++..++.|++++.|++.
T Consensus 101 r~aEl~HGR~AMLA~~G~~~~e~l~~~g~~~ 131 (267)
T PLN00098 101 AQAELMHSRWAMLAVAGILIPECLERLGFIE 131 (267)
T ss_pred HHHHhhccHHHHHHHHHHHHHHHhcCCCccc
Confidence 4699999999999999999999999877654
No 66
>PLN00097 photosystem I light harvesting complex Lhca2/4, chlorophyll a/b binding; Provisional
Probab=95.84 E-value=0.0056 Score=57.52 Aligned_cols=31 Identities=29% Similarity=0.205 Sum_probs=27.4
Q ss_pred cchhhhhhhHHHHHHHHHHHHHHHHhCcchh
Q 018479 315 TRSAETWNGRAAMLAVLVLLVLEVTTGEGFL 345 (355)
Q Consensus 315 ~~~~e~~ngr~am~g~~~~~~~e~~~g~~~~ 345 (355)
...+|+.|||+||+|++..++.|++++.++.
T Consensus 82 ~r~aEl~hGR~AMLa~~G~lv~e~l~~~g~~ 112 (244)
T PLN00097 82 FVQAELMHARWAMLGLAGCVAPELLTKIGMA 112 (244)
T ss_pred HHHHHHhcchHHHHHHhhhhHHHHhcCCCcc
Confidence 3468999999999999999999999987663
No 67
>PLN00170 photosystem II light-harvesting-Chl-binding protein Lhcb6 (CP24); Provisional
Probab=95.82 E-value=0.006 Score=57.65 Aligned_cols=32 Identities=34% Similarity=0.382 Sum_probs=27.9
Q ss_pred cchhhhhhhHHHHHHHHHHHHHHHHhCcchhh
Q 018479 315 TRSAETWNGRAAMLAVLVLLVLEVTTGEGFLH 346 (355)
Q Consensus 315 ~~~~e~~ngr~am~g~~~~~~~e~~~g~~~~~ 346 (355)
...+|+.|||+||+|++..++.|+++|...++
T Consensus 95 ~r~~El~hGR~AMLa~~G~~v~e~l~g~~w~~ 126 (255)
T PLN00170 95 YREAELIHGRWAMAAVVGIFVGQAWSGIPWFE 126 (255)
T ss_pred HHHHHhhccHHHHHHHHhhhhHHHccCCChhh
Confidence 34689999999999999999999999876544
No 68
>PLN00025 photosystem II light harvesting chlorophyll a/b binding protein; Provisional
Probab=95.74 E-value=0.0067 Score=57.59 Aligned_cols=29 Identities=31% Similarity=0.341 Sum_probs=26.1
Q ss_pred chhhhhhhHHHHHHHHHHHHHHHHhCcch
Q 018479 316 RSAETWNGRAAMLAVLVLLVLEVTTGEGF 344 (355)
Q Consensus 316 ~~~e~~ngr~am~g~~~~~~~e~~~g~~~ 344 (355)
..+|+.|||+||+|++..++.|++++.|+
T Consensus 92 re~El~hGR~AMLa~~G~i~~e~l~~~g~ 120 (262)
T PLN00025 92 RELEVIHARWAMLGALGCVTPELLAKNGV 120 (262)
T ss_pred HHHHHhccHHHHHHHhhhhhHHHhhcCCc
Confidence 46899999999999999999999987665
No 69
>PLN00187 photosystem II light-harvesting complex II protein Lhcb4; Provisional
Probab=95.73 E-value=0.0046 Score=59.30 Aligned_cols=27 Identities=48% Similarity=0.517 Sum_probs=24.5
Q ss_pred chhhhhhhHHHHHHHHHHHHHHHHhCc
Q 018479 316 RSAETWNGRAAMLAVLVLLVLEVTTGE 342 (355)
Q Consensus 316 ~~~e~~ngr~am~g~~~~~~~e~~~g~ 342 (355)
..+|+.||||||+|++..++.|+++|.
T Consensus 134 REaELiHGRwAMLAvaG~lvpEll~G~ 160 (286)
T PLN00187 134 RECELIHGRWAMLATLGALSVEALTGV 160 (286)
T ss_pred HHHHhhhhHHHHHHhhchhhHHhccCC
Confidence 469999999999999999999998764
No 70
>PLN00147 light-harvesting complex I chlorophyll-a/b binding protein Lhca5; Provisional
Probab=95.60 E-value=0.0079 Score=56.83 Aligned_cols=29 Identities=28% Similarity=0.255 Sum_probs=25.7
Q ss_pred chhhhhhhHHHHHHHHHHHHHHHHhCcch
Q 018479 316 RSAETWNGRAAMLAVLVLLVLEVTTGEGF 344 (355)
Q Consensus 316 ~~~e~~ngr~am~g~~~~~~~e~~~g~~~ 344 (355)
..+|+.|||+||+|++..++.|+++..++
T Consensus 84 r~aElkhGR~AMlA~~G~l~~e~~~~~g~ 112 (252)
T PLN00147 84 VQAELVHSRFAMAGVAGILFTDLLRVTGI 112 (252)
T ss_pred HHHHhhccHHHHHHHhhhhHHHHhccCCC
Confidence 35799999999999999999999887664
No 71
>PLN00170 photosystem II light-harvesting-Chl-binding protein Lhcb6 (CP24); Provisional
Probab=95.44 E-value=0.0074 Score=57.02 Aligned_cols=34 Identities=32% Similarity=0.452 Sum_probs=29.3
Q ss_pred chhhhhhhHHHHHHHHHHHHHHHHhCcchhhhhcc
Q 018479 316 RSAETWNGRAAMLAVLVLLVLEVTTGEGFLHQWGI 350 (355)
Q Consensus 316 ~~~e~~ngr~am~g~~~~~~~e~~~g~~~~~~~~~ 350 (355)
+.+|+-|||+||+.|+..++ +..||+|.++.+|+
T Consensus 222 k~kEIKnGRLAMlA~lGf~~-Qa~~g~~p~~~l~~ 255 (255)
T PLN00170 222 KLAEIKHARLAMVAMLIFYF-EAGQGKTPLGALGL 255 (255)
T ss_pred HHHHHhhhHHHHHHHHhHhe-eeccCCCchhhhcC
Confidence 45899999999999887765 55899999999985
No 72
>PLN00171 photosystem light-harvesting complex -chlorophyll a/b binding protein Lhcb7; Provisional
Probab=95.33 E-value=0.011 Score=57.46 Aligned_cols=30 Identities=33% Similarity=0.249 Sum_probs=26.3
Q ss_pred chhhhhhhHHHHHHHHHHHHHHHHhCcchh
Q 018479 316 RSAETWNGRAAMLAVLVLLVLEVTTGEGFL 345 (355)
Q Consensus 316 ~~~e~~ngr~am~g~~~~~~~e~~~g~~~~ 345 (355)
..+|+.|||+||+|++..++.|++++.+..
T Consensus 149 reaELkHGR~AMLA~~G~lv~e~l~~~g~~ 178 (324)
T PLN00171 149 FNFEILHARWAMLAALGVVIPEVLDLFGAV 178 (324)
T ss_pred HHHHhccchHHHHHHhhHHHHHHhccCCcc
Confidence 468999999999999999999998876544
No 73
>COG4822 CbiK Cobalamin biosynthesis protein CbiK, Co2+ chelatase [Coenzyme metabolism]
Probab=95.27 E-value=0.31 Score=45.05 Aligned_cols=110 Identities=13% Similarity=0.173 Sum_probs=77.4
Q ss_pred ccCCCchhHHHHHHHHHHHHHHhccCCCceEEEeeecCCCCHHHHHHHHHHcCCCEEEEeecCccccccchHHHHHHHH-
Q 018479 5 FVLVLSLAIISCIQAEELRKSLWEKNLPAKVYVGMRYWHPFTEEAIEQIKRDGITKLVVLPLYPQFSISTSGSSLRLLE- 83 (355)
Q Consensus 5 igggSPL~~~t~~qa~~l~~~L~~~~~~~~V~~amry~~P~i~~~l~~l~~~G~~~IvvlPlyPqyS~~ttgs~~~~~~- 83 (355)
+||||-.-..+ --..|.-.|.+.|-+ .|++|.-=+-|.+.++++.|+++|++++-++|+... ..-|+.++..
T Consensus 143 mgHGt~h~s~~--~YacLd~~~~~~~f~-~v~v~~ve~yP~~d~vi~~l~~~~~~~v~L~PlMlv----AG~Ha~nDMas 215 (265)
T COG4822 143 MGHGTDHHSNA--AYACLDHVLDEYGFD-NVFVAAVEGYPLVDTVIEYLRKNGIKEVHLIPLMLV----AGDHAKNDMAS 215 (265)
T ss_pred EecCCCccHHH--HHHHHHHHHHhcCCC-ceEEEEecCCCcHHHHHHHHHHcCCceEEEeeeEEe----echhhhhhhcc
Confidence 57775433322 244566666655421 688998889999999999999999999999999753 3334454443
Q ss_pred -------HHHHhccccCCceeEEecCCCCChHHHHHHHHHHHHHHHhC
Q 018479 84 -------SIFREDEYLVNMQHTVIPSWYQREGYITAMANLIEKELQNF 124 (355)
Q Consensus 84 -------e~~~~~~~~~~~~~~~i~~~~~~p~yi~a~~~~I~~~l~~~ 124 (355)
+.+...+ + .+ -.++...+..|.+...+.++|+.+++..
T Consensus 216 ddedswk~il~~~G-~-~v-~~~l~GLGE~~~iq~ifi~Hik~aie~~ 260 (265)
T COG4822 216 DDEDSWKNILEKNG-F-KV-EVYLHGLGENPAIQAIFIDHIKDAIERD 260 (265)
T ss_pred cchHHHHHHHHhCC-c-ee-EEEeecCCCcHHHHHHHHHHHHHHHhhh
Confidence 2332222 1 12 3578899999999999999999998753
No 74
>PLN00100 light-harvesting complex chlorophyll-a/b protein of photosystem I (Lhca); Provisional
Probab=94.31 E-value=0.026 Score=53.08 Aligned_cols=25 Identities=36% Similarity=0.369 Sum_probs=22.4
Q ss_pred chhhhhhhHHHHHHHHHHHHHHHHh
Q 018479 316 RSAETWNGRAAMLAVLVLLVLEVTT 340 (355)
Q Consensus 316 ~~~e~~ngr~am~g~~~~~~~e~~~ 340 (355)
..+|+.|||+||+|++..++.|+++
T Consensus 74 r~aEl~hGR~AMla~~G~~~~E~~~ 98 (246)
T PLN00100 74 QEAELMNGRWAMAATAGILFTDAVG 98 (246)
T ss_pred HHHHhhcchHHHHHHhhhhHHHHhc
Confidence 3589999999999999999999863
No 75
>PLN00089 fucoxanthin-chlorophyll a/c binding protein; Provisional
Probab=93.79 E-value=0.058 Score=49.76 Aligned_cols=28 Identities=39% Similarity=0.459 Sum_probs=24.4
Q ss_pred chhhhhhhHHHHHHHHHHHHHHHHhCcc
Q 018479 316 RSAETWNGRAAMLAVLVLLVLEVTTGEG 343 (355)
Q Consensus 316 ~~~e~~ngr~am~g~~~~~~~e~~~g~~ 343 (355)
..+|+-|||+||++++..++.|.++.-|
T Consensus 76 r~~ElkhGR~AMlA~~G~~~~~~~~~pG 103 (209)
T PLN00089 76 RESELKHGRAAMLAVAGFIAPDFVRIPG 103 (209)
T ss_pred HHHHHHhhHHHHHHHHHHHHHHHHcCCC
Confidence 4699999999999999999999876443
No 76
>PLN00099 light-harvesting complex IChlorophyll A-B binding protein Lhca1; Provisional
Probab=93.74 E-value=0.035 Score=52.28 Aligned_cols=28 Identities=36% Similarity=0.204 Sum_probs=24.0
Q ss_pred CcchhhhhhhHHHHHHHHHHHHHHHHhC
Q 018479 314 WTRSAETWNGRAAMLAVLVLLVLEVTTG 341 (355)
Q Consensus 314 ~~~~~e~~ngr~am~g~~~~~~~e~~~g 341 (355)
+-..+|+.|||+||+|++..++.|+++.
T Consensus 81 ~~r~~ELkHGR~AMLAv~G~i~~E~l~~ 108 (243)
T PLN00099 81 RYKESELIHCRWAMLAVPGILVPEALGL 108 (243)
T ss_pred HHHHHhccCCcHHHHHHhhHHHHHHhcc
Confidence 3346899999999999999999998643
No 77
>PRK10481 hypothetical protein; Provisional
Probab=89.91 E-value=5.4 Score=37.25 Aligned_cols=127 Identities=12% Similarity=0.090 Sum_probs=77.7
Q ss_pred eEEEeeecCCCCHHHHHHHHHHcCCCEEEEeecCccccccchHHHHHHHHHHHHhccccCCceeEEecCCCCC-----hH
Q 018479 34 KVYVGMRYWHPFTEEAIEQIKRDGITKLVVLPLYPQFSISTSGSSLRLLESIFREDEYLVNMQHTVIPSWYQR-----EG 108 (355)
Q Consensus 34 ~V~~amry~~P~i~~~l~~l~~~G~~~IvvlPlyPqyS~~ttgs~~~~~~e~~~~~~~~~~~~~~~i~~~~~~-----p~ 108 (355)
.|.++=++-.|.+.+.++++.++|++-|+++..- .+ |++ ...+.+--. +.
T Consensus 67 ~v~~s~~~v~~~lq~~i~~l~~~g~d~ivl~Ctg----df-------------------p~l--~a~r~~l~~P~~~i~~ 121 (224)
T PRK10481 67 QVHVSKQKVERDLQSVIEVLDNQGYDVILLLCTG----EF-------------------PSL--TARNAILLEPSRILPP 121 (224)
T ss_pred EEEEEHHHHHHHHHHHHHHHHhCCCCEEEEEecC----CC-------------------CCc--cccCccccCchhhHHH
Confidence 6777778888899999999999999988886652 11 110 011111111 33
Q ss_pred HHHHHHHHHHHHHHhCCCCCceEEEEeeCCCchhhhcccCCchHHHHHHHHHHHHHHhcccccCCceeEEEEecccCCCC
Q 018479 109 YITAMANLIEKELQNFDSPEQVMIFFSAHGVPLAYVEEAGDPYKAEMEECVDLIMEELEKRKITNAYTLAYQSRVGPVEW 188 (355)
Q Consensus 109 yi~a~~~~I~~~l~~~~~~~~~~llfsaHgiP~~~v~~~GDpY~~~~~~ta~~v~e~l~~~~~~~~~~l~fQS~~G~~~W 188 (355)
++.|+. ...+..|+ -||..++.+..+...+. |. .++|-.. .+|
T Consensus 122 lv~Al~-----------~g~riGVi---------------tP~~~qi~~~~~kw~~~-G~-------~v~~~~a---spy 164 (224)
T PRK10481 122 LVAAIV-----------GGHQVGVI---------------VPVEEQLAQQAQKWQVL-QK-------PPVFALA---SPY 164 (224)
T ss_pred HHHHhc-----------CCCeEEEE---------------EeCHHHHHHHHHHHHhc-CC-------ceeEeec---CCC
Confidence 333332 11344443 27888888888777654 43 2333222 123
Q ss_pred CCC--cHHHHHHHHHhcCCceEEEEcceecccchhh
Q 018479 189 LKP--YTDETIIKLGQKGVKSLLAVPISFVSEHIET 222 (355)
Q Consensus 189 l~P--~~~d~l~~L~~~G~k~VvVvP~gFvsD~lET 222 (355)
..+ .+.++.++|...|++-|+.-|.||.+++-+.
T Consensus 165 ~~~~~~l~~aa~~L~~~gaD~Ivl~C~G~~~~~~~~ 200 (224)
T PRK10481 165 HGSEEELIDAGKELLDQGADVIVLDCLGYHQRHRDL 200 (224)
T ss_pred CCCHHHHHHHHHHhhcCCCCEEEEeCCCcCHHHHHH
Confidence 333 4667777787889999999999999866543
No 78
>COG0621 MiaB 2-methylthioadenine synthetase [Translation, ribosomal structure and biogenesis]
Probab=89.46 E-value=1.9 Score=44.16 Aligned_cols=142 Identities=12% Similarity=0.131 Sum_probs=83.6
Q ss_pred HHHHHHHHcCCCEEEEeecCccccccchHHHHHH-------HHHHHHhcccc---CCceeEEecCCCCChHHHHHHHH--
Q 018479 48 EAIEQIKRDGITKLVVLPLYPQFSISTSGSSLRL-------LESIFREDEYL---VNMQHTVIPSWYQREGYITAMAN-- 115 (355)
Q Consensus 48 ~~l~~l~~~G~~~IvvlPlyPqyS~~ttgs~~~~-------~~e~~~~~~~~---~~~~~~~i~~~~~~p~yi~a~~~-- 115 (355)
+-+++|+++|+++|+++-. .+++|-.+ +.+.++....- ..+++.++.|....+.+|+++++
T Consensus 180 ~ev~~Lv~~G~kEI~L~gq-------dv~aYG~D~~~~~~~l~~Ll~~l~~I~G~~riR~~~~~P~~~~d~lI~~~~~~~ 252 (437)
T COG0621 180 KEVKRLVAQGVKEIVLTGQ-------DVNAYGKDLGGGKPNLADLLRELSKIPGIERIRFGSSHPLEFTDDLIEAIAETP 252 (437)
T ss_pred HHHHHHHHCCCeEEEEEEE-------ehhhccccCCCCccCHHHHHHHHhcCCCceEEEEecCCchhcCHHHHHHHhcCC
Confidence 4455778899999999876 33333222 34444433222 34567778888888888888876
Q ss_pred HHHHHHHhCCCCCceEEEEeeCCCchhhhcccCCch-HHHHHHHHHHHHHHhcccccCCceeEEEEecccCCCCCCCcHH
Q 018479 116 LIEKELQNFDSPEQVMIFFSAHGVPLAYVEEAGDPY-KAEMEECVDLIMEELEKRKITNAYTLAYQSRVGPVEWLKPYTD 194 (355)
Q Consensus 116 ~I~~~l~~~~~~~~~~llfsaHgiP~~~v~~~GDpY-~~~~~~ta~~v~e~l~~~~~~~~~~l~fQS~~G~~~Wl~P~~~ 194 (355)
+|...+. |= .=||.+.-.- .-.-+| ..+..+..+.+++..+.-.+.-++-++|=. + ++-+++
T Consensus 253 kv~~~lH---------lP-vQsGsd~ILk-~M~R~yt~e~~~~~i~k~R~~~Pd~~i~tDiIVGFPg----E--TeedFe 315 (437)
T COG0621 253 KVCPHLH---------LP-VQSGSDRILK-RMKRGYTVEEYLEIIEKLRAARPDIAISTDIIVGFPG----E--TEEDFE 315 (437)
T ss_pred ccccccc---------Cc-cccCCHHHHH-HhCCCcCHHHHHHHHHHHHHhCCCceEeccEEEECCC----C--CHHHHH
Confidence 2332221 10 0111110000 011247 678888888888776433222234455421 2 367899
Q ss_pred HHHHHHHhcCCceEEEEcc
Q 018479 195 ETIIKLGQKGVKSLLAVPI 213 (355)
Q Consensus 195 d~l~~L~~~G~k~VvVvP~ 213 (355)
++++=+.+-+..++-+++|
T Consensus 316 ~tl~lv~e~~fd~~~~F~Y 334 (437)
T COG0621 316 ETLDLVEEVRFDRLHVFKY 334 (437)
T ss_pred HHHHHHHHhCCCEEeeeec
Confidence 9998888889999999987
No 79
>COG1453 Predicted oxidoreductases of the aldo/keto reductase family [General function prediction only]
Probab=88.73 E-value=9 Score=38.35 Aligned_cols=177 Identities=15% Similarity=0.161 Sum_probs=84.6
Q ss_pred HHHHHHHHHHHHhccCCCceEEEeeec----CCCCHHHHHHHHHHcCCCEEEEeecCccccccchHHHHHHHHHHHHhcc
Q 018479 15 SCIQAEELRKSLWEKNLPAKVYVGMRY----WHPFTEEAIEQIKRDGITKLVVLPLYPQFSISTSGSSLRLLESIFREDE 90 (355)
Q Consensus 15 t~~qa~~l~~~L~~~~~~~~V~~amry----~~P~i~~~l~~l~~~G~~~IvvlPlyPqyS~~ttgs~~~~~~e~~~~~~ 90 (355)
+++.+..+-+.--+.|+.+ |..|+-| ++|++..+|..-- -+++.+-.=+|-+-.-......+-+.+.++..
T Consensus 32 d~~~~~~~i~~aie~GiNy-idTA~~Yh~g~sE~~lgkaL~~~~---Rekv~LaTKlp~~~~~~~edm~r~fneqLekl- 106 (391)
T COG1453 32 DEENANETIDYAIEHGINY-IDTAWPYHGGESEEFLGKALKDGY---REKVKLATKLPSWPVKDREDMERIFNEQLEKL- 106 (391)
T ss_pred cHHHHHHHHHHHHHcCCce-EeecccccCCCchHHHHHHhhhcc---cceEEEEeecCCccccCHHHHHHHHHHHHHHh-
Confidence 4444444433333456553 6677666 6677776665533 23555544455211222223333334444322
Q ss_pred ccCCceeEEecCCCCC----hHHHHHHHHHHHHHHHhCCCCCceEEE-EeeCCCchhhhcccCCchHHHHHHHHHHHHHH
Q 018479 91 YLVNMQHTVIPSWYQR----EGYITAMANLIEKELQNFDSPEQVMIF-FSAHGVPLAYVEEAGDPYKAEMEECVDLIMEE 165 (355)
Q Consensus 91 ~~~~~~~~~i~~~~~~----p~yi~a~~~~I~~~l~~~~~~~~~~ll-fsaHgiP~~~v~~~GDpY~~~~~~ta~~v~e~ 165 (355)
.+.+++-|.-| ..+-....-.+.+++++.....+++.+ ||+||.+. .+.+.
T Consensus 107 -----~~Dy~D~yliH~l~~e~~~k~~~~g~~df~~kak~eGkIr~~GFSfHgs~e-------------------~~~~i 162 (391)
T COG1453 107 -----GTDYIDYYLIHGLNTETWEKIERLGVFDFLEKAKAEGKIRNAGFSFHGSTE-------------------VFKEI 162 (391)
T ss_pred -----CCchhhhhhhccccHHHHHHHHccChHHHHHHHHhcCcEEEeeecCCCCHH-------------------HHHHH
Confidence 22333333322 333333232234555444333444444 99999742 22233
Q ss_pred hcccccCCceeEEEEecccCCCCCCCcHHHHHHHHHhcCCceEEEE-cc---eecccchhhHHHH
Q 018479 166 LEKRKITNAYTLAYQSRVGPVEWLKPYTDETIIKLGQKGVKSLLAV-PI---SFVSEHIETLEEI 226 (355)
Q Consensus 166 l~~~~~~~~~~l~fQS~~G~~~Wl~P~~~d~l~~L~~~G~k~VvVv-P~---gFvsD~lETl~ei 226 (355)
+.. .+|+.+ |.+.--.-|=.....+.++...+.| ..|+|+ |. +.+.--=+++.+|
T Consensus 163 v~a----~~~dfv-qlq~ny~d~~n~~~~~~l~~A~~~~-~gI~IMeP~~gG~l~~~vP~~~~~l 221 (391)
T COG1453 163 VDA----YPWDFV-QLQYNYIDQKNQAGTEGLKYAASKG-LGIFIMEPLDGGGLLYNVPEKLEEL 221 (391)
T ss_pred Hhc----CCcceE-EeeeeeeccchhcccHHHHHHHhCC-CcEEEEeeCCCCCcccCCCHHHHHH
Confidence 321 136666 6665444444555567888888877 456666 55 3444333444433
No 80
>PLN00120 fucoxanthin-chlorophyll a-c binding protein; Provisional
Probab=84.31 E-value=0.29 Score=44.94 Aligned_cols=23 Identities=48% Similarity=0.546 Sum_probs=21.1
Q ss_pred chhhhhhhHHHHHHHHHHHHHHH
Q 018479 316 RSAETWNGRAAMLAVLVLLVLEV 338 (355)
Q Consensus 316 ~~~e~~ngr~am~g~~~~~~~e~ 338 (355)
..+|+-|||+||++++..++.|.
T Consensus 65 r~~ElkhGRlAMlA~~G~~~~~~ 87 (202)
T PLN00120 65 RYVEIKHGRISMLAVVGYLVTEA 87 (202)
T ss_pred HHHHhhcccHHHHhhccceeecc
Confidence 46899999999999999999996
No 81
>cd01994 Alpha_ANH_like_IV This is a subfamily of Adenine nucleotide alpha hydrolases superfamily.Adeninosine nucleotide alpha hydrolases superfamily includes N type ATP PPases and ATP sulphurylases. It forms a apha/beta/apha fold which binds to Adenosine group. This subfamily of proteins is predicted to bind ATP. This domainhas a strongly conserved motif SGGKD at the N terminus.
Probab=82.20 E-value=39 Score=30.60 Aligned_cols=86 Identities=17% Similarity=0.220 Sum_probs=54.3
Q ss_pred ceeEEecCCCCChHHHHHHHHHHHHHHHhCCCCCceEEEEeeCCCchhhhcccCCchHHHHHHHHHHHHHHhcccccCCc
Q 018479 95 MQHTVIPSWYQREGYITAMANLIEKELQNFDSPEQVMIFFSAHGVPLAYVEEAGDPYKAEMEECVDLIMEELEKRKITNA 174 (355)
Q Consensus 95 ~~~~~i~~~~~~p~yi~a~~~~I~~~l~~~~~~~~~~llfsaHgiP~~~v~~~GDpY~~~~~~ta~~v~e~l~~~~~~~~ 174 (355)
+++..+.--.+.+.|.+.+.+.+++..++ + -..+++ ||-+-....+-.+.+.+++|..
T Consensus 59 ipl~~i~~~~~~e~~~~~l~~~l~~~~~~-g---~~~vv~-------------G~i~sd~~~~~~e~~~~~~gl~----- 116 (194)
T cd01994 59 IPLIRIEISGEEEDEVEDLKELLRKLKEE-G---VDAVVF-------------GAILSEYQRTRVERVCERLGLE----- 116 (194)
T ss_pred CcEEEEeCCCCchHHHHHHHHHHHHHHHc-C---CCEEEE-------------CccccHHHHHHHHHHHHHcCCE-----
Confidence 34444442237899999998888887543 1 113444 6555445566677778888653
Q ss_pred eeEEEEecccCCCCCCCcHHHHHHHHHhcCCceEEEE
Q 018479 175 YTLAYQSRVGPVEWLKPYTDETIIKLGQKGVKSLLAV 211 (355)
Q Consensus 175 ~~l~fQS~~G~~~Wl~P~~~d~l~~L~~~G~k~VvVv 211 (355)
.+... |-. +.++.++++.+.|.+.+++.
T Consensus 117 -~~~PL-------W~~-~~~~ll~e~~~~g~~~~iv~ 144 (194)
T cd01994 117 -PLAPL-------WGR-DQEELLREMIEAGFKAIIIK 144 (194)
T ss_pred -EEecc-------cCC-CHHHHHHHHHHcCCeEEEEE
Confidence 12222 544 44669999999999877754
No 82
>CHL00200 trpA tryptophan synthase alpha subunit; Provisional
Probab=79.32 E-value=60 Score=30.98 Aligned_cols=139 Identities=18% Similarity=0.251 Sum_probs=77.8
Q ss_pred CCceEEEeeecCCC----CHHHHHHHHHHcCCCEEEEeecCccccccchHHHHHHHHHHHHhccccCCceeEEecCCCCC
Q 018479 31 LPAKVYVGMRYWHP----FTEEAIEQIKRDGITKLVVLPLYPQFSISTSGSSLRLLESIFREDEYLVNMQHTVIPSWYQR 106 (355)
Q Consensus 31 ~~~~V~~amry~~P----~i~~~l~~l~~~G~~~IvvlPlyPqyS~~ttgs~~~~~~e~~~~~~~~~~~~~~~i~~~~~~ 106 (355)
.+.++ +.|.|+.| .++.-++++++.|++-+++ |=.|. ... .++.+..++.+.. .+-.+.|=- .
T Consensus 90 ~~~p~-vlm~Y~N~i~~~G~e~F~~~~~~aGvdgvii-pDLP~------ee~-~~~~~~~~~~gi~---~I~lv~PtT-~ 156 (263)
T CHL00200 90 IKAPI-VIFTYYNPVLHYGINKFIKKISQAGVKGLII-PDLPY------EES-DYLISVCNLYNIE---LILLIAPTS-S 156 (263)
T ss_pred CCCCE-EEEecccHHHHhCHHHHHHHHHHcCCeEEEe-cCCCH------HHH-HHHHHHHHHcCCC---EEEEECCCC-C
Confidence 34555 48999999 5566788999999998877 55563 111 2233333332211 233444433 3
Q ss_pred hHHHHHHHHHHHHHHHhCCCCCceEEEEeeCCCchhhhcccCCchHHHHHHHHHHHHHHhcccccCCceeEEEEecccCC
Q 018479 107 EGYITAMANLIEKELQNFDSPEQVMIFFSAHGVPLAYVEEAGDPYKAEMEECVDLIMEELEKRKITNAYTLAYQSRVGPV 186 (355)
Q Consensus 107 p~yi~a~~~~I~~~l~~~~~~~~~~llfsaHgiP~~~v~~~GDpY~~~~~~ta~~v~e~l~~~~~~~~~~l~fQS~~G~~ 186 (355)
+.-++.+++. . +..-+++|--|+ - +..+....++.+..+.+++..+. ++.+.|
T Consensus 157 ~eri~~i~~~-------a---~gFIY~vS~~Gv----T-G~~~~~~~~~~~~i~~ir~~t~~-----Pi~vGF------- 209 (263)
T CHL00200 157 KSRIQKIARA-------A---PGCIYLVSTTGV----T-GLKTELDKKLKKLIETIKKMTNK-----PIILGF------- 209 (263)
T ss_pred HHHHHHHHHh-------C---CCcEEEEcCCCC----C-CCCccccHHHHHHHHHHHHhcCC-----CEEEEC-------
Confidence 3333333321 1 223455554443 1 22234567788888888875432 366666
Q ss_pred CCCCCcHHHHHHHHHhcCCceEEEEc
Q 018479 187 EWLKPYTDETIIKLGQKGVKSLLAVP 212 (355)
Q Consensus 187 ~Wl~P~~~d~l~~L~~~G~k~VvVvP 212 (355)
+=+..+.++++.+.|++-|+|=.
T Consensus 210 ---GI~~~e~~~~~~~~GADGvVVGS 232 (263)
T CHL00200 210 ---GISTSEQIKQIKGWNINGIVIGS 232 (263)
T ss_pred ---CcCCHHHHHHHHhcCCCEEEECH
Confidence 35566777888887777766643
No 83
>TIGR00290 MJ0570_dom MJ0570-related uncharacterized domain. Proteins with this uncharacterized domain include two apparent ortholog families in the Archaea, one of which is universal among the first four completed archaeal genomes, and YLR143W, a much longer protein from Saccharomyces cerevisiae. The domain comprises the full length of the archaeal proteins and the first third of the yeast protein.
Probab=77.78 E-value=46 Score=31.04 Aligned_cols=121 Identities=10% Similarity=0.153 Sum_probs=67.7
Q ss_pred HHHHcCCCEEEEeecCccccccchHHH--HHHHHHHHHhccccCCceeEEecCCCCChHHHHHHHHHHHHHHHhCCCCCc
Q 018479 52 QIKRDGITKLVVLPLYPQFSISTSGSS--LRLLESIFREDEYLVNMQHTVIPSWYQREGYITAMANLIEKELQNFDSPEQ 129 (355)
Q Consensus 52 ~l~~~G~~~IvvlPlyPqyS~~ttgs~--~~~~~e~~~~~~~~~~~~~~~i~~~~~~p~yi~a~~~~I~~~l~~~~~~~~ 129 (355)
.+.++ .+-+.++.++|..+.+...|. .+.++...+.. ++++..+..-.....|.+.+.+.+++. + -
T Consensus 19 ~a~~~-~~v~~L~t~~~~~~~s~~~H~~~~~~~~~qA~al----gipl~~~~~~~~~e~~~e~l~~~l~~~----g---v 86 (223)
T TIGR00290 19 HALKE-HEVISLVNIMPENEESYMFHGVNAHLTDLQAESI----GIPLIKLYTEGTEEDEVEELKGILHTL----D---V 86 (223)
T ss_pred HHHHh-CeeEEEEEEecCCCCcccccccCHHHHHHHHHHc----CCCeEEeecCCCccHHHHHHHHHHHHc----C---C
Confidence 33444 666677778887432222221 12222211221 233333444445667777776666554 1 1
Q ss_pred eEEEEeeCCCchhhhcccCCchHHHHHHHHHHHHHHhcccccCCceeEEEEecccCCCCCCCcHHHHHHHHHhcCCceEE
Q 018479 130 VMIFFSAHGVPLAYVEEAGDPYKAEMEECVDLIMEELEKRKITNAYTLAYQSRVGPVEWLKPYTDETIIKLGQKGVKSLL 209 (355)
Q Consensus 130 ~~llfsaHgiP~~~v~~~GDpY~~~~~~ta~~v~e~l~~~~~~~~~~l~fQS~~G~~~Wl~P~~~d~l~~L~~~G~k~Vv 209 (355)
.+++| ||-+......-.+.+.+++|.. .+... |-.+ .++.++++.+.|.+.++
T Consensus 87 ~~vv~-------------GdI~s~~qr~~~e~v~~~lgl~------~~~PL-------W~~~-~~~ll~e~i~~G~~aiI 139 (223)
T TIGR00290 87 EAVVF-------------GAIYSEYQKTRIERVCRELGLK------SFAPL-------WHRD-PEKLMEEFVEEKFEARI 139 (223)
T ss_pred CEEEE-------------CCcccHHHHHHHHHHHHhcCCE------Eeccc-------cCCC-HHHHHHHHHHcCCeEEE
Confidence 14555 7877666667778888888763 12221 4344 45699999999999887
Q ss_pred EE
Q 018479 210 AV 211 (355)
Q Consensus 210 Vv 211 (355)
+.
T Consensus 140 v~ 141 (223)
T TIGR00290 140 IA 141 (223)
T ss_pred EE
Confidence 64
No 84
>PF04748 Polysacc_deac_2: Divergent polysaccharide deacetylase; InterPro: IPR006837 This is a family of uncharacterised proteins that includes YibQ.; PDB: 2QV5_A 2NLY_A.
Probab=74.21 E-value=73 Score=29.35 Aligned_cols=88 Identities=16% Similarity=0.203 Sum_probs=53.4
Q ss_pred CCceEEEeeecCCCCHHHHHHHHHHcCCCEEEEeecCcccc----------ccchHHHHHHHHHHHHhccccCCceeEEe
Q 018479 31 LPAKVYVGMRYWHPFTEEAIEQIKRDGITKLVVLPLYPQFS----------ISTSGSSLRLLESIFREDEYLVNMQHTVI 100 (355)
Q Consensus 31 ~~~~V~~amry~~P~i~~~l~~l~~~G~~~IvvlPlyPqyS----------~~ttgs~~~~~~e~~~~~~~~~~~~~~~i 100 (355)
.+++|.+++-=..|+..+..+..++.|.+-++-+||-|.-- ..+.....+.+..++.......++.=+..
T Consensus 19 Lp~pvT~ai~P~~~~~~~~a~~a~~~G~EvllhlPMep~~~~~~gp~~L~~~~~~~~i~~~l~~al~~vp~a~GvnNhmG 98 (213)
T PF04748_consen 19 LPFPVTFAILPYAPYSREWAERARAAGHEVLLHLPMEPKGYKDPGPGALLTGMSEEEIRKRLEAALARVPGAVGVNNHMG 98 (213)
T ss_dssp SSTTCEEEEETTSTTHHHHHHHHHHCT-EEEEEEEE--TTTT---TT-B-TTS-HHHHHHHHHHHHCCSTT-SEEEEEE-
T ss_pred CCCCeEEEECCCCCChHHHHHHHHHcCCEEEEeCCCCCCCCCCcccccccCCCCHHHHHHHHHHHHHHCCCcEEEecCCC
Confidence 46788999877889999999999999999999999999741 12222222333333332222233445666
Q ss_pred cCCCCChHHHHHHHHHHH
Q 018479 101 PSWYQREGYITAMANLIE 118 (355)
Q Consensus 101 ~~~~~~p~yi~a~~~~I~ 118 (355)
..+-.++.-.+.+.+.++
T Consensus 99 S~~T~~~~~m~~vl~~l~ 116 (213)
T PF04748_consen 99 SRFTSDREAMRWVLEVLK 116 (213)
T ss_dssp CCHHC-HHHHHHHHHHHH
T ss_pred ccccCCHHHHHHHHHHHH
Confidence 677778777766665443
No 85
>COG0528 PyrH Uridylate kinase [Nucleotide transport and metabolism]
Probab=73.61 E-value=41 Score=31.67 Aligned_cols=118 Identities=18% Similarity=0.227 Sum_probs=69.5
Q ss_pred cCCCCChHHHHHHHHHHHHHHHhCCCCCceEEEEeeCCCchh-hhc-ccC-Cch-HHH--HHH---HHHHHHHHhccccc
Q 018479 101 PSWYQREGYITAMANLIEKELQNFDSPEQVMIFFSAHGVPLA-YVE-EAG-DPY-KAE--MEE---CVDLIMEELEKRKI 171 (355)
Q Consensus 101 ~~~~~~p~yi~a~~~~I~~~l~~~~~~~~~~llfsaHgiP~~-~v~-~~G-DpY-~~~--~~~---ta~~v~e~l~~~~~ 171 (355)
.+|+.++.+++.+++.|++.... .-++.+|. .=|=..| ++. ..| |.. .++ +.. .+.++++.|+..
T Consensus 21 ~~~gid~~~i~~~a~~i~~~~~~---g~eV~iVv-GGGni~Rg~~~~~~g~~r~~~D~mGmlaTvmNal~L~~aL~~~-- 94 (238)
T COG0528 21 QGFGIDPEVLDRIANEIKELVDL---GVEVAVVV-GGGNIARGYIGAAAGMDRVTADYMGMLATVMNALALQDALERL-- 94 (238)
T ss_pred CCCCCCHHHHHHHHHHHHHHHhc---CcEEEEEE-CCCHHHHhHHHHHcCCchhhhhHHHHHHHHHHHHHHHHHHHhc--
Confidence 36889999999999999998753 12445554 1111111 100 001 111 111 111 234556666543
Q ss_pred CCceeEEEEecccCCCCCCCcHHHHHHHHHhcCCceEEEEc-----ceecccchhhHHHHHH
Q 018479 172 TNAYTLAYQSRVGPVEWLKPYTDETIIKLGQKGVKSLLAVP-----ISFVSEHIETLEEIDV 228 (355)
Q Consensus 172 ~~~~~l~fQS~~G~~~Wl~P~~~d~l~~L~~~G~k~VvVvP-----~gFvsD~lETl~eid~ 228 (355)
.+...-||...-..-.+|+......+..++| +|+|+- |+|++|..-.|--..+
T Consensus 95 --~~~~~v~sai~~~~~~e~~~~~~A~~~l~~g--rVvIf~gGtg~P~fTTDt~AALrA~ei 152 (238)
T COG0528 95 --GVDTRVQSAIAMPQVAEPYSRREAIRHLEKG--RVVIFGGGTGNPGFTTDTAAALRAEEI 152 (238)
T ss_pred --CCcceecccccCccccCccCHHHHHHHHHcC--CEEEEeCCCCCCCCchHHHHHHHHHHh
Confidence 3567778876533446898888888888877 677774 7899999876554333
No 86
>PF01297 TroA: Periplasmic solute binding protein family; InterPro: IPR006127 This is a family of ABC transporter metal-binding lipoproteins. An example is the periplasmic zinc-binding protein TroA P96116 from SWISSPROT that interacts with an ATP-binding cassette transport system in Treponema pallidum and plays a role in the transport of zinc across the cytoplasmic membrane. Related proteins are found in both Gram-positive and Gram-negative bacteria. ; GO: 0046872 metal ion binding, 0030001 metal ion transport; PDB: 2PS9_A 2PS0_A 2OSV_A 2OGW_A 2PS3_A 2PRS_B 3MFQ_C 3GI1_B 2OV3_A 1PQ4_A ....
Probab=68.99 E-value=98 Score=28.70 Aligned_cols=193 Identities=20% Similarity=0.252 Sum_probs=96.7
Q ss_pred HHHHHHHHHHHHHHhccCCCceEEEeeecCCCCHHHHHHHHHHcCCCEEEEeecCccccccchHHHHHHHHHHHHhcccc
Q 018479 13 IISCIQAEELRKSLWEKNLPAKVYVGMRYWHPFTEEAIEQIKRDGITKLVVLPLYPQFSISTSGSSLRLLESIFREDEYL 92 (355)
Q Consensus 13 ~~t~~qa~~l~~~L~~~~~~~~V~~amry~~P~i~~~l~~l~~~G~~~IvvlPlyPqyS~~ttgs~~~~~~e~~~~~~~~ 92 (355)
+.|-++.++|++. ++-|+.|..|- +++.+.++ +..-.++.++++...... ....
T Consensus 36 ~~~p~d~~~l~~A------dlvv~~G~~~e-~~l~~~~~---~~~~~~~~~i~~~~~~~~--------------~~~~-- 89 (256)
T PF01297_consen 36 EPTPSDIKKLQKA------DLVVYNGLGLE-PWLEKLLE---SSQNPKVKVIDLSEGIDL--------------DHHG-- 89 (256)
T ss_dssp ---HHHHHHHHHS------SEEEES-TTTS-CCHHHHHH---TTTTTTTEEEETTTTS-G--------------STTC--
T ss_pred cCChHHHHHHHhC------CEEEEeCCccc-hhhhhhhh---cccccccceEEeeccccc--------------ccCC--
Confidence 3345555555442 66677775554 88888772 233445566666543200 0000
Q ss_pred CCceeEEecCCCCChHHHHHHHHHHHHHHHhCCCCCceEEEEeeCCCchhhhcccCCchHHHHHHHHHHHHHHhcccccC
Q 018479 93 VNMQHTVIPSWYQREGYITAMANLIEKELQNFDSPEQVMIFFSAHGVPLAYVEEAGDPYKAEMEECVDLIMEELEKRKIT 172 (355)
Q Consensus 93 ~~~~~~~i~~~~~~p~yi~a~~~~I~~~l~~~~~~~~~~llfsaHgiP~~~v~~~GDpY~~~~~~ta~~v~e~l~~~~~~ 172 (355)
-=+++|-+|.....+++.|.+.|.+.....+. .+. .+-..|..++.++.+.+.+.+..- +
T Consensus 90 ------~npH~Wldp~~~~~~~~~Ia~~L~~~~P~~~~-----------~y~-~N~~~~~~~L~~l~~~~~~~~~~~--~ 149 (256)
T PF01297_consen 90 ------HNPHVWLDPENAKKMAEAIADALSELDPANKD-----------YYE-KNAEKYLKELDELDAEIKEKLAKL--P 149 (256)
T ss_dssp ------BESTGGGSHHHHHHHHHHHHHHHHHHTGGGHH-----------HHH-HHHHHHHHHHHHHHHHHHHHHTTS--S
T ss_pred ------CCCchHHHHHHHHHHHHHHHHHHHHhCccchH-----------HHH-HHHHHHHHHHHHHHHHHHHHhhcc--c
Confidence 03578889999999999999998765311110 111 233456667777777777665321 1
Q ss_pred CceeEEEEec---------------ccCCCCCCCcHH--HHHHH-HHhcCCceEEEEcceecccchhhHHHHHHHHHHHH
Q 018479 173 NAYTLAYQSR---------------VGPVEWLKPYTD--ETIIK-LGQKGVKSLLAVPISFVSEHIETLEEIDVEYKELA 234 (355)
Q Consensus 173 ~~~~l~fQS~---------------~G~~~Wl~P~~~--d~l~~-L~~~G~k~VvVvP~gFvsD~lETl~eid~e~~e~a 234 (355)
...-++|-.. .+..+=.+|+.. ..+.+ +.+.|++ +++...++-....+ .++
T Consensus 150 ~~~~v~~h~~~~Y~~~~~gl~~~~~~~~~~~~~ps~~~l~~l~~~ik~~~v~-~i~~e~~~~~~~~~----------~la 218 (256)
T PF01297_consen 150 GRPVVVYHDAFQYFAKRYGLKVIGVIEISPGEEPSPKDLAELIKLIKENKVK-CIFTEPQFSSKLAE----------ALA 218 (256)
T ss_dssp GGEEEEEESTTHHHHHHTT-EEEEEESSSSSSSS-HHHHHHHHHHHHHTT-S-EEEEETTS-THHHH----------HHH
T ss_pred CCeEEEEChHHHHHHHhcCCceeeeeccccccCCCHHHHHHHHHHhhhcCCc-EEEecCCCChHHHH----------HHH
Confidence 0011111111 111111234333 23333 3444543 45555566665444 446
Q ss_pred HhcCCceEEEcCCC----CCCHHHHHHHHHHHH
Q 018479 235 LKSGIEKWGRVPAL----GCEATFISDLADAVI 263 (355)
Q Consensus 235 ~~~G~~~~~rv~~l----n~~p~fi~~La~~V~ 263 (355)
++.|+. +..+..+ .+...+++.+...+.
T Consensus 219 ~~~g~~-vv~ld~l~~~~~~~~~y~~~~~~n~~ 250 (256)
T PF01297_consen 219 KETGVK-VVYLDPLGGGIPDGDSYLDMMEQNLD 250 (256)
T ss_dssp HCCT-E-EEESSTTCSTTSSTTSHHHHHHHHHH
T ss_pred HHcCCc-EEEeCCCcCCCCCcCCHHHHHHHHHH
Confidence 688875 6677777 556677777765443
No 87
>PF06309 Torsin: Torsin; InterPro: IPR010448 This family consists of several eukaryotic torsin proteins. Torsion dystonia is an autosomal dominant movement disorder characterised by involuntary, repetitive muscle contractions and twisted postures. The most severe early-onset form of dystonia has been linked to mutations in the human DYT1 (TOR1A) gene encoding a protein termed torsinA. While causative genetic alterations have been identified, the function of torsin proteins and the molecular mechanism underlying dystonia remain unknown. Phylogenetic analysis of the torsin protein family indicates these proteins share distant sequence similarity with the large and diverse family of AAA ATPase, central region containing proteins () proteins. It has been suggested that torsins play a role in effectively managing protein folding and that possible breakdown in a neuroprotective mechanism that is, in part, mediated by torsins may be responsible for the neuronal dysfunction associated with dystonia [].; GO: 0005524 ATP binding, 0051085 chaperone mediated protein folding requiring cofactor
Probab=67.58 E-value=19 Score=30.66 Aligned_cols=67 Identities=21% Similarity=0.359 Sum_probs=42.5
Q ss_pred CCCCChHHHHHHHHHHHHHHHhCCCCCceEEEEeeCCCchhhhcccCCchHHHHHHHHHHHHHHhcccccCCceeEEEEe
Q 018479 102 SWYQREGYITAMANLIEKELQNFDSPEQVMIFFSAHGVPLAYVEEAGDPYKAEMEECVDLIMEELEKRKITNAYTLAYQS 181 (355)
Q Consensus 102 ~~~~~p~yi~a~~~~I~~~l~~~~~~~~~~llfsaHgiP~~~v~~~GDpY~~~~~~ta~~v~e~l~~~~~~~~~~l~fQS 181 (355)
..+-++.-.+.+.+.|+..++.. .+++ .||+|+||-| +.|.-|. +++|++.|=..+...++-.-|-+
T Consensus 26 ~l~GQhla~~~v~~ai~~~l~~~-~p~K-pLVlSfHG~t-----GtGKn~v------~~liA~~ly~~G~~S~~V~~f~~ 92 (127)
T PF06309_consen 26 NLFGQHLAVEVVVNAIKGHLANP-NPRK-PLVLSFHGWT-----GTGKNFV------SRLIAEHLYKSGMKSPFVHQFIA 92 (127)
T ss_pred HccCcHHHHHHHHHHHHHHHcCC-CCCC-CEEEEeecCC-----CCcHHHH------HHHHHHHHHhcccCCCceeeecc
Confidence 34566777788888888888653 3344 5999999986 6676675 56677765333333334444443
No 88
>COG0406 phoE Broad specificity phosphatase PhoE and related phosphatases [General function prediction only]
Probab=64.76 E-value=91 Score=27.76 Aligned_cols=122 Identities=16% Similarity=0.119 Sum_probs=60.8
Q ss_pred CCchhHHHHHHHHHHHHHHhccCCCceEEEeeecCCCCHH--HHHHHHH-HcCCCEEEEeecCccccccchHH----HHH
Q 018479 8 VLSLAIISCIQAEELRKSLWEKNLPAKVYVGMRYWHPFTE--EAIEQIK-RDGITKLVVLPLYPQFSISTSGS----SLR 80 (355)
Q Consensus 8 gSPL~~~t~~qa~~l~~~L~~~~~~~~V~~amry~~P~i~--~~l~~l~-~~G~~~IvvlPlyPqyS~~ttgs----~~~ 80 (355)
.+||.+.-++||+.+.+.|...+.++... |+.|.-. ++.+.+. ..|.. +.+.+.+ .....|. ...
T Consensus 26 d~pLt~~G~~QA~~l~~~l~~~~~~~~~i----~sS~l~Ra~~TA~~~a~~~~~~-~~~~~~l---~E~~~G~~eg~~~~ 97 (208)
T COG0406 26 DSPLTEEGRAQAEALAERLAARDIGFDAI----YSSPLKRAQQTAEPLAEELGLP-LEVDDRL---REIDFGDWEGLTID 97 (208)
T ss_pred CCCCCHHHHHHHHHHHHHHhhcCCCCCEE----EECchHHHHHHHHHHHHhcCCC-ceecCCe---eEeecccccCCcHH
Confidence 46999999999999999998543333222 5666654 3333333 34555 3443331 2222222 223
Q ss_pred HHHH----HHHhccccCCceeEEecCCCCChHHHHHHHHHHHHHHHhCCC--CCceEEEEeeCCCchhhh
Q 018479 81 LLES----IFREDEYLVNMQHTVIPSWYQREGYITAMANLIEKELQNFDS--PEQVMIFFSAHGVPLAYV 144 (355)
Q Consensus 81 ~~~e----~~~~~~~~~~~~~~~i~~~~~~p~yi~a~~~~I~~~l~~~~~--~~~~~llfsaHgiP~~~v 144 (355)
++.+ ........| ....+..-+.+. .+.+|+..++++... .++ .+|++.||.+++.+
T Consensus 98 e~~~~~p~~~~~~~~~~-----~~~~~~~gEs~~-~~~~R~~~~~~~~~~~~~~~-~vlvVsHg~~ir~l 160 (208)
T COG0406 98 ELAEEPPEELAAWLADP-----YLAPPPGGESLA-DVSKRVVAALAELLRSPPGN-NVLVVSHGGVIRAL 160 (208)
T ss_pred HHHHhCHHHHHHHhcCc-----cccCCCCCCCHH-HHHHHHHHHHHHHHHhcCCC-eEEEEEChHHHHHH
Confidence 3322 211111011 111121123344 345556665554321 122 68999999987754
No 89
>PLN02591 tryptophan synthase
Probab=61.91 E-value=50 Score=31.28 Aligned_cols=91 Identities=18% Similarity=0.205 Sum_probs=61.0
Q ss_pred HHHHHHHHHHHHHhcccccCCceeEEEEecccCCCCCCCcHHHHHHHHHhcCCceEEEEcceecccchhhHHHHHHHHHH
Q 018479 153 AEMEECVDLIMEELEKRKITNAYTLAYQSRVGPVEWLKPYTDETIIKLGQKGVKSLLAVPISFVSEHIETLEEIDVEYKE 232 (355)
Q Consensus 153 ~~~~~ta~~v~e~l~~~~~~~~~~l~fQS~~G~~~Wl~P~~~d~l~~L~~~G~k~VvVvP~gFvsD~lETl~eid~e~~e 232 (355)
+++.+..+.+++.... + -+-++|.+- +.+..+++-++++++.|++.+++...-+ |-..++++
T Consensus 64 ~~~~~~~~~~r~~~~~---p-~ilm~Y~N~-----i~~~G~~~F~~~~~~aGv~GviipDLP~---------ee~~~~~~ 125 (250)
T PLN02591 64 DSVISMLKEVAPQLSC---P-IVLFTYYNP-----ILKRGIDKFMATIKEAGVHGLVVPDLPL---------EETEALRA 125 (250)
T ss_pred HHHHHHHHHHhcCCCC---C-EEEEecccH-----HHHhHHHHHHHHHHHcCCCEEEeCCCCH---------HHHHHHHH
Confidence 3445555555543221 1 167788763 3467888999999999999999875432 22235788
Q ss_pred HHHhcCCceEEEcCCCCCCHHHHHHHHHHH
Q 018479 233 LALKSGIEKWGRVPALGCEATFISDLADAV 262 (355)
Q Consensus 233 ~a~~~G~~~~~rv~~ln~~p~fi~~La~~V 262 (355)
.++++|+. ...+=.++.++.-++.+++.-
T Consensus 126 ~~~~~gl~-~I~lv~Ptt~~~ri~~ia~~~ 154 (250)
T PLN02591 126 EAAKNGIE-LVLLTTPTTPTERMKAIAEAS 154 (250)
T ss_pred HHHHcCCe-EEEEeCCCCCHHHHHHHHHhC
Confidence 88999986 555556788887777777663
No 90
>cd00950 DHDPS Dihydrodipicolinate synthase (DHDPS) is a key enzyme in lysine biosynthesis. It catalyzes the aldol condensation of L-aspartate-beta- semialdehyde and pyruvate to dihydropicolinic acid via a Schiff base formation between pyruvate and a lysine residue. The functional enzyme is a homotetramer consisting of a dimer of dimers. DHDPS is member of dihydrodipicolinate synthase family that comprises several pyruvate-dependent class I aldolases that use the same catalytic step to catalyze different reactions in different pathways.
Probab=61.53 E-value=1.5e+02 Score=28.07 Aligned_cols=93 Identities=20% Similarity=0.241 Sum_probs=52.9
Q ss_pred HHHHHHHHHHHHHHhcccccCCceeEEEEecccCCCCCCCcHHHHHHH---HHhcCCceEEEEcceecccchhhHHHHHH
Q 018479 152 KAEMEECVDLIMEELEKRKITNAYTLAYQSRVGPVEWLKPYTDETIIK---LGQKGVKSLLAVPISFVSEHIETLEEIDV 228 (355)
Q Consensus 152 ~~~~~~ta~~v~e~l~~~~~~~~~~l~fQS~~G~~~Wl~P~~~d~l~~---L~~~G~k~VvVvP~gFvsD~lETl~eid~ 228 (355)
..+-.+..+.+.+..+. +..+..+ .| .++++++++. ..+.|++.|++.||.|..-.-+-+++
T Consensus 52 ~~Er~~l~~~~~~~~~~-----~~~vi~g--v~-----~~~~~~~~~~a~~a~~~G~d~v~~~~P~~~~~~~~~l~~--- 116 (284)
T cd00950 52 DEEHEAVIEAVVEAVNG-----RVPVIAG--TG-----SNNTAEAIELTKRAEKAGADAALVVTPYYNKPSQEGLYA--- 116 (284)
T ss_pred HHHHHHHHHHHHHHhCC-----CCcEEec--cC-----CccHHHHHHHHHHHHHcCCCEEEEcccccCCCCHHHHHH---
Confidence 44555566666666532 1333322 22 4678877775 34569999999998876543343443
Q ss_pred HHHHHHHhcCCceEEE-cCC---CCCCHHHHHHHH
Q 018479 229 EYKELALKSGIEKWGR-VPA---LGCEATFISDLA 259 (355)
Q Consensus 229 e~~e~a~~~G~~~~~r-v~~---ln~~p~fi~~La 259 (355)
-++++++..+..-+.| .|. ..-++.++..|+
T Consensus 117 ~~~~ia~~~~~pi~lYn~P~~~g~~ls~~~~~~L~ 151 (284)
T cd00950 117 HFKAIAEATDLPVILYNVPGRTGVNIEPETVLRLA 151 (284)
T ss_pred HHHHHHhcCCCCEEEEEChhHhCCCCCHHHHHHHh
Confidence 5678887666553333 221 224555555554
No 91
>PRK04147 N-acetylneuraminate lyase; Provisional
Probab=60.71 E-value=1.2e+02 Score=29.03 Aligned_cols=93 Identities=18% Similarity=0.195 Sum_probs=55.4
Q ss_pred HHHHHHHHHHHHHHhcccccCCceeEEEEecccCCCCCCCcHHHHHHH---HHhcCCceEEEEcceecccchhhHHHHHH
Q 018479 152 KAEMEECVDLIMEELEKRKITNAYTLAYQSRVGPVEWLKPYTDETIIK---LGQKGVKSLLAVPISFVSEHIETLEEIDV 228 (355)
Q Consensus 152 ~~~~~~ta~~v~e~l~~~~~~~~~~l~fQS~~G~~~Wl~P~~~d~l~~---L~~~G~k~VvVvP~gFvsD~lETl~eid~ 228 (355)
..+-.+..+.+.+..+. +..+-.+. | .++++++++. ..+.|++.|+++||.|..-.-+-+++
T Consensus 56 ~eEr~~~~~~~~~~~~~-----~~~viagv--g-----~~~t~~ai~~a~~a~~~Gad~v~v~~P~y~~~~~~~l~~--- 120 (293)
T PRK04147 56 TEEKKQVLEIVAEEAKG-----KVKLIAQV--G-----SVNTAEAQELAKYATELGYDAISAVTPFYYPFSFEEICD--- 120 (293)
T ss_pred HHHHHHHHHHHHHHhCC-----CCCEEecC--C-----CCCHHHHHHHHHHHHHcCCCEEEEeCCcCCCCCHHHHHH---
Confidence 44555555656665532 23344443 2 4788888765 34569999999999887655454544
Q ss_pred HHHHHHHhcCCceEEE-cCC---CCCCHHHHHHHH
Q 018479 229 EYKELALKSGIEKWGR-VPA---LGCEATFISDLA 259 (355)
Q Consensus 229 e~~e~a~~~G~~~~~r-v~~---ln~~p~fi~~La 259 (355)
-+++++...+..-+.| .|. .+-+++++..|+
T Consensus 121 ~f~~va~a~~lPv~iYn~P~~tg~~l~~~~l~~L~ 155 (293)
T PRK04147 121 YYREIIDSADNPMIVYNIPALTGVNLSLDQFNELF 155 (293)
T ss_pred HHHHHHHhCCCCEEEEeCchhhccCCCHHHHHHHh
Confidence 5677776655543333 332 345666666665
No 92
>TIGR00262 trpA tryptophan synthase, alpha subunit. Tryptophan synthase catalyzes the last step in the biosynthesis of tryptophan. The alpha chain is responsible for the aldol cleavage of indoleglycerol phosphate to indole and glyceraldehyde 3-phosphate. In bacteria and plants each domain is found on a separate subunit (alpha and beta chains), while in fungi the two domains are fused together on a single multifunctional protein. The signature pattern for trpA contains three conserved acidic residues. [LIVM]-E-[LIVM]-G-x(2)-[FYC]-[ST]-[DE]-[PA]-[LIVMY]-[AGLI]-[DE]-G and this is located between residues 43-58 of the model. The Sulfolobus solfataricus trpA is known to be quite divergent from other known trpA sequences.
Probab=59.42 E-value=1.6e+02 Score=27.82 Aligned_cols=137 Identities=15% Similarity=0.159 Sum_probs=73.9
Q ss_pred CCceEEEeeecCCC----CHHHHHHHHHHcCCCEEEEeecCccccccchHHHHHHHHHHHHhccccCCce-eEEecCCCC
Q 018479 31 LPAKVYVGMRYWHP----FTEEAIEQIKRDGITKLVVLPLYPQFSISTSGSSLRLLESIFREDEYLVNMQ-HTVIPSWYQ 105 (355)
Q Consensus 31 ~~~~V~~amry~~P----~i~~~l~~l~~~G~~~IvvlPlyPqyS~~ttgs~~~~~~e~~~~~~~~~~~~-~~~i~~~~~ 105 (355)
.+.++. .|-|..| .+++-++++++.|++-+++-.+ |. ... ..+.+.+++. ++. +..+.|=-
T Consensus 86 ~~~plv-~m~Y~Npi~~~G~e~f~~~~~~aGvdgviipDl-p~------ee~-~~~~~~~~~~----gl~~i~lv~P~T- 151 (256)
T TIGR00262 86 PNIPIG-LLTYYNLIFRKGVEEFYAKCKEVGVDGVLVADL-PL------EES-GDLVEAAKKH----GVKPIFLVAPNA- 151 (256)
T ss_pred CCCCEE-EEEeccHHhhhhHHHHHHHHHHcCCCEEEECCC-Ch------HHH-HHHHHHHHHC----CCcEEEEECCCC-
Confidence 356665 8999999 5567788999999998887544 42 111 2222223322 222 22333322
Q ss_pred ChHHHHHHHHHHHHHHHhCCCCCceEEEEeeCCCchhhhcccCCchHHHHHHHHHHHHHHhcccccCCceeEEEEecccC
Q 018479 106 REGYITAMANLIEKELQNFDSPEQVMIFFSAHGVPLAYVEEAGDPYKAEMEECVDLIMEELEKRKITNAYTLAYQSRVGP 185 (355)
Q Consensus 106 ~p~yi~a~~~~I~~~l~~~~~~~~~~llfsaHgiP~~~v~~~GDpY~~~~~~ta~~v~e~l~~~~~~~~~~l~fQS~~G~ 185 (355)
.+.-++.++ +.. +..-++.|-.|. - +....+..++.+..+.+++..+. ++.+.|
T Consensus 152 ~~eri~~i~-------~~~---~gfiy~vs~~G~----T-G~~~~~~~~~~~~i~~lr~~~~~-----pi~vgf------ 205 (256)
T TIGR00262 152 DDERLKQIA-------EKS---QGFVYLVSRAGV----T-GARNRAASALNELVKRLKAYSAK-----PVLVGF------ 205 (256)
T ss_pred CHHHHHHHH-------HhC---CCCEEEEECCCC----C-CCcccCChhHHHHHHHHHhhcCC-----CEEEeC------
Confidence 222222222 211 223455565554 1 11123556677777878776432 344444
Q ss_pred CCCCCCcHHHHHHHHHhcCCceEEEE
Q 018479 186 VEWLKPYTDETIIKLGQKGVKSLLAV 211 (355)
Q Consensus 186 ~~Wl~P~~~d~l~~L~~~G~k~VvVv 211 (355)
+=++.+.++++.+.|+..|+|=
T Consensus 206 ----GI~~~e~~~~~~~~GADgvVvG 227 (256)
T TIGR00262 206 ----GISKPEQVKQAIDAGADGVIVG 227 (256)
T ss_pred ----CCCCHHHHHHHHHcCCCEEEEC
Confidence 3455567788888888765554
No 93
>PF08645 PNK3P: Polynucleotide kinase 3 phosphatase; InterPro: IPR013954 Polynucleotide kinase 3 phosphatases play a role in the repair of single breaks in DNA induced by DNA-damaging agents such as gamma radiation and camptothecin []. ; PDB: 2FPW_A 2FPR_A 2FPX_A 2FPS_A 2FPU_B 3ZVM_A 1YJ5_A 3ZVL_A 3U7E_B 3U7G_A ....
Probab=59.30 E-value=29 Score=30.32 Aligned_cols=62 Identities=18% Similarity=0.208 Sum_probs=41.3
Q ss_pred CCCCCcHHHHHHHHHhcCCceEEEEc-ceeccc--chhhHHHHHHHHHHHHHhcCCceEEEcCCCC
Q 018479 187 EWLKPYTDETIIKLGQKGVKSLLAVP-ISFVSE--HIETLEEIDVEYKELALKSGIEKWGRVPALG 249 (355)
Q Consensus 187 ~Wl~P~~~d~l~~L~~~G~k~VvVvP-~gFvsD--~lETl~eid~e~~e~a~~~G~~~~~rv~~ln 249 (355)
+|+.|.+.++|++|.+.|+ .||||. =+=++. ...++.++-.....+.++.|+.-..++++-.
T Consensus 28 ~~~~~~v~~~L~~l~~~Gy-~IvIvTNQ~gi~~~~~~~~~~~~~~ki~~il~~l~ip~~~~~a~~~ 92 (159)
T PF08645_consen 28 KFFPPGVPEALRELHKKGY-KIVIVTNQSGIGRGMGEKDLENFHEKIENILKELGIPIQVYAAPHK 92 (159)
T ss_dssp EEC-TTHHHHHHHHHHTTE-EEEEEEE-CCCCCTBTCCHHHHHHHHHHHHHHHCTS-EEEEECGCS
T ss_pred hhcchhHHHHHHHHHhcCC-eEEEEeCccccccccccchHHHHHHHHHHHHHHcCCceEEEecCCC
Confidence 5678999999999999996 455553 333333 3455666666777888888988666666554
No 94
>PF04273 DUF442: Putative phosphatase (DUF442); InterPro: IPR005939 Although this domain is uncharacterised it seems likely that it performs a phosphatase function.; GO: 0016787 hydrolase activity; PDB: 2F46_A 3GXH_B 3GXG_B.
Probab=58.32 E-value=42 Score=27.62 Aligned_cols=67 Identities=21% Similarity=0.311 Sum_probs=32.7
Q ss_pred CCcHHHHHHHHHhcCCceEEEE-cceecccchhhHHHHHHHHHHHHHhcCCceEEEcCCCCCCH--HHHHHHHHHHH
Q 018479 190 KPYTDETIIKLGQKGVKSLLAV-PISFVSEHIETLEEIDVEYKELALKSGIEKWGRVPALGCEA--TFISDLADAVI 263 (355)
Q Consensus 190 ~P~~~d~l~~L~~~G~k~VvVv-P~gFvsD~lETl~eid~e~~e~a~~~G~~~~~rv~~ln~~p--~fi~~La~~V~ 263 (355)
+|+. +-+++|+++|+|.||=. |-+=-.+.- ... +.++.++++|+. |+++|.-...+ .-++.+.+.+.
T Consensus 14 Q~~~-~d~~~la~~GfktVInlRpd~E~~~qp-~~~----~~~~~a~~~Gl~-y~~iPv~~~~~~~~~v~~f~~~l~ 83 (110)
T PF04273_consen 14 QPSP-EDLAQLAAQGFKTVINLRPDGEEPGQP-SSA----EEAAAAEALGLQ-YVHIPVDGGAITEEDVEAFADALE 83 (110)
T ss_dssp S--H-HHHHHHHHCT--EEEE-S-TTSTTT-T--HH----CHHHHHHHCT-E-EEE----TTT--HHHHHHHHHHHH
T ss_pred CCCH-HHHHHHHHCCCcEEEECCCCCCCCCCC-CHH----HHHHHHHHcCCe-EEEeecCCCCCCHHHHHHHHHHHH
Confidence 4644 47889999999998876 433222211 111 356788899995 99999876543 33444444444
No 95
>COG4750 LicC CTP:phosphocholine cytidylyltransferase involved in choline phosphorylation for cell surface LPS epitopes [Cell envelope biogenesis, outer membrane]
Probab=56.49 E-value=12 Score=34.40 Aligned_cols=50 Identities=22% Similarity=0.271 Sum_probs=39.5
Q ss_pred cccCCCchhHHHHHHHHHHHHHHhccCCCceEEEeeecCCCCHHHHHHHHHHcCCCEEEEeecCc
Q 018479 4 CFVLVLSLAIISCIQAEELRKSLWEKNLPAKVYVGMRYWHPFTEEAIEQIKRDGITKLVVLPLYP 68 (355)
Q Consensus 4 ~igggSPL~~~t~~qa~~l~~~L~~~~~~~~V~~amry~~P~i~~~l~~l~~~G~~~IvvlPlyP 68 (355)
|-|=||+++..|.+--..|-+- +++|.|+..+++|++.|++.|+++.=|.
T Consensus 7 AAG~gsR~~plT~~tpK~LlkV---------------~g~plIErqI~~L~e~gI~dI~IVvGYl 56 (231)
T COG4750 7 AAGLGSRFVPLTQSTPKSLLKV---------------NGEPLIERQIEQLREAGIDDITIVVGYL 56 (231)
T ss_pred ecccccccccccccCChHHHHh---------------cCcccHHHHHHHHHHCCCceEEEEeeeh
Confidence 4577888888887644443221 4799999999999999999999988875
No 96
>TIGR03249 KdgD 5-dehydro-4-deoxyglucarate dehydratase. 5-dehydro-4-deoxyglucarate dehydratase not only catalyzes the dehydration of the substrate (diol to ketone + water), but causes the decarboxylation of the intermediate product to yield 2-oxoglutarate semialdehyde (2,5-dioxopentanoate). The gene for the enzyme is usually observed in the vicinity of transporters and dehydratases handling D-galactarate and D-gluconate as well as aldehyde dehydrogenases which convert the product to alpha-ketoglutarate.
Probab=56.37 E-value=1.7e+02 Score=27.99 Aligned_cols=93 Identities=17% Similarity=0.155 Sum_probs=55.2
Q ss_pred HHHHHHHHHHHHHHhcccccCCceeEEEEecccCCCCCCCcHHHHHHHH---HhcCCceEEEEcceecccchhhHHHHHH
Q 018479 152 KAEMEECVDLIMEELEKRKITNAYTLAYQSRVGPVEWLKPYTDETIIKL---GQKGVKSLLAVPISFVSEHIETLEEIDV 228 (355)
Q Consensus 152 ~~~~~~ta~~v~e~l~~~~~~~~~~l~fQS~~G~~~Wl~P~~~d~l~~L---~~~G~k~VvVvP~gFvsD~lETl~eid~ 228 (355)
..|-.+..+.+.+..+. +..+-.+ . +.+|+++++.. .+.|++.++++||.|..-+-|-+++
T Consensus 57 ~eEr~~v~~~~~~~~~g-----~~pvi~g--v------~~~t~~ai~~a~~a~~~Gadav~~~pP~y~~~s~~~i~~--- 120 (296)
T TIGR03249 57 PAEYEQVVEIAVSTAKG-----KVPVYTG--V------GGNTSDAIEIARLAEKAGADGYLLLPPYLINGEQEGLYA--- 120 (296)
T ss_pred HHHHHHHHHHHHHHhCC-----CCcEEEe--c------CccHHHHHHHHHHHHHhCCCEEEECCCCCCCCCHHHHHH---
Confidence 44555555656665432 2333333 2 23577776653 4569999999999876544455554
Q ss_pred HHHHHHHhcCCceEEEc-CCCCCCHHHHHHHHH
Q 018479 229 EYKELALKSGIEKWGRV-PALGCEATFISDLAD 260 (355)
Q Consensus 229 e~~e~a~~~G~~~~~rv-~~ln~~p~fi~~La~ 260 (355)
-++++++..+..-+.|- +-.+-+++.+..|++
T Consensus 121 ~f~~v~~a~~~pvilYn~~g~~l~~~~~~~La~ 153 (296)
T TIGR03249 121 HVEAVCESTDLGVIVYQRDNAVLNADTLERLAD 153 (296)
T ss_pred HHHHHHhccCCCEEEEeCCCCCCCHHHHHHHHh
Confidence 56777776655434442 234567777777765
No 97
>TIGR01019 sucCoAalpha succinyl-CoA synthetase, alpha subunit. ATP citrate lyases appear to form an outgroup.
Probab=54.82 E-value=25 Score=34.05 Aligned_cols=51 Identities=12% Similarity=0.152 Sum_probs=38.3
Q ss_pred CCcHHHHHHHHHhcCCceEEEEcceecccchhhHHHHHHHHHHHHHhcCCceEEEcCCC
Q 018479 190 KPYTDETIIKLGQKGVKSLLAVPISFVSEHIETLEEIDVEYKELALKSGIEKWGRVPAL 248 (355)
Q Consensus 190 ~P~~~d~l~~L~~~G~k~VvVvP~gFvsD~lETl~eid~e~~e~a~~~G~~~~~rv~~l 248 (355)
.+.+.++++++.+.|+|.++|+.-||- |+ ...+..+.++++|+. +.=..|+
T Consensus 73 a~~v~~~l~e~~~~Gvk~avIis~Gf~----e~---~~~~l~~~a~~~gir-ilGPNc~ 123 (286)
T TIGR01019 73 APFAADAIFEAIDAGIELIVCITEGIP----VH---DMLKVKRYMEESGTR-LIGPNCP 123 (286)
T ss_pred HHHHHHHHHHHHHCCCCEEEEECCCCC----HH---HHHHHHHHHHHcCCE-EECCCCc
Confidence 367899999999999999999998982 33 234678888888864 5444443
No 98
>PF05990 DUF900: Alpha/beta hydrolase of unknown function (DUF900); InterPro: IPR010297 This domain is associated with proteins of unknown function, which are hydrolase-like.
Probab=53.29 E-value=72 Score=29.58 Aligned_cols=134 Identities=13% Similarity=0.213 Sum_probs=78.6
Q ss_pred HHHHHHHHHHHhCCCCCceEEEEeeCCCchhhhcccCCchHHHHHHHHHHHHHHhcccccCCceeEEEEecccC------
Q 018479 112 AMANLIEKELQNFDSPEQVMIFFSAHGVPLAYVEEAGDPYKAEMEECVDLIMEELEKRKITNAYTLAYQSRVGP------ 185 (355)
Q Consensus 112 a~~~~I~~~l~~~~~~~~~~llfsaHgiP~~~v~~~GDpY~~~~~~ta~~v~e~l~~~~~~~~~~l~fQS~~G~------ 185 (355)
++...+.+.++..+ ++ .+++-.||- ...+..-+..+++ +...++..+ ..+-.+|-|....
T Consensus 3 ~~~~~~~~~l~~~~--~~-~vlvfVHGy--------n~~f~~a~~r~aq-l~~~~~~~~--~~i~FsWPS~g~~~~Y~~d 68 (233)
T PF05990_consen 3 AFQAQLNQRLAKSP--DK-EVLVFVHGY--------NNSFEDALRRAAQ-LAHDLGFPG--VVILFSWPSDGSLLGYFYD 68 (233)
T ss_pred HHHHHHHHHHhhCC--CC-eEEEEEeCC--------CCCHHHHHHHHHH-HHHHhCCCc--eEEEEEcCCCCChhhhhhh
Confidence 45566666666443 22 356667887 2335555555554 455565543 2477778876432
Q ss_pred ---CCCCCCcHHHHHHHHHhc-CCceEEEEcceeccc-chhhHHHHHHHHH--HHHHhcCCceEEEcCCCCCCHHHHHHH
Q 018479 186 ---VEWLKPYTDETIIKLGQK-GVKSLLAVPISFVSE-HIETLEEIDVEYK--ELALKSGIEKWGRVPALGCEATFISDL 258 (355)
Q Consensus 186 ---~~Wl~P~~~d~l~~L~~~-G~k~VvVvP~gFvsD-~lETl~eid~e~~--e~a~~~G~~~~~rv~~ln~~p~fi~~L 258 (355)
..|..|.+.+.|+.|.+. |.++|-++.-+.=+- -+|+|..+..+.. +.... +.++..+..--+...|...+
T Consensus 69 ~~~a~~s~~~l~~~L~~L~~~~~~~~I~ilaHSMG~rv~~~aL~~l~~~~~~~~~~~~--~~~viL~ApDid~d~f~~~~ 146 (233)
T PF05990_consen 69 RESARFSGPALARFLRDLARAPGIKRIHILAHSMGNRVLLEALRQLASEGERPDVKAR--FDNVILAAPDIDNDVFRSQL 146 (233)
T ss_pred hhhHHHHHHHHHHHHHHHHhccCCceEEEEEeCchHHHHHHHHHHHHhcccchhhHhh--hheEEEECCCCCHHHHHHHH
Confidence 457778899999999988 889999997542111 1344555444433 11112 22455666555666777666
Q ss_pred HHH
Q 018479 259 ADA 261 (355)
Q Consensus 259 a~~ 261 (355)
..+
T Consensus 147 ~~~ 149 (233)
T PF05990_consen 147 PDL 149 (233)
T ss_pred HHH
Confidence 543
No 99
>PF13380 CoA_binding_2: CoA binding domain; PDB: 3FF4_A 2D5A_A 2D59_A 2E6U_X 1IUL_A 1IUK_A 1Y81_A 2DUW_A.
Probab=51.04 E-value=22 Score=29.39 Aligned_cols=46 Identities=24% Similarity=0.146 Sum_probs=30.4
Q ss_pred CcHHHHHHHHHhcCCceEEEEcceecccchhhHHHHHHHHHHHHHhcCCceEEEcCCC
Q 018479 191 PYTDETIIKLGQKGVKSLLAVPISFVSEHIETLEEIDVEYKELALKSGIEKWGRVPAL 248 (355)
Q Consensus 191 P~~~d~l~~L~~~G~k~VvVvP~gFvsD~lETl~eid~e~~e~a~~~G~~~~~rv~~l 248 (355)
..+.+.++++.+.|++.|++.|= ..+.++.+.++++|+. +.-..|+
T Consensus 66 ~~~~~~v~~~~~~g~~~v~~~~g-----------~~~~~~~~~a~~~gi~-vigp~C~ 111 (116)
T PF13380_consen 66 DKVPEIVDEAAALGVKAVWLQPG-----------AESEELIEAAREAGIR-VIGPNCL 111 (116)
T ss_dssp HHHHHHHHHHHHHT-SEEEE-TT-----------S--HHHHHHHHHTT-E-EEESS-H
T ss_pred HHHHHHHHHHHHcCCCEEEEEcc-----------hHHHHHHHHHHHcCCE-EEeCCcc
Confidence 37888999999999999998885 3334677888888874 5444443
No 100
>cd01020 TroA_b Metal binding protein TroA_b. These proteins are predicted to function as initial receptors in ABC transport of metal ions. They belong to the TroA superfamily of helical backbone metal receptor proteins that share a distinct fold and ligand binding mechanism. A typical TroA protein is comprised of two globular subdomains connected by a single helix and can bind the metal ion in the cleft between these domains. In addition, these proteins sometimes have a low complexity region containing a metal-binding histidine-rich motif (repetitive HDH sequence).
Probab=51.01 E-value=2.1e+02 Score=26.81 Aligned_cols=140 Identities=17% Similarity=0.172 Sum_probs=72.8
Q ss_pred cCCCCChHHHHHHHHHHHHHHHhCCCCCceEEEEeeCCCchhhhcccCCchHHHHHHHHHHHHHHhcccccCCceeEEEE
Q 018479 101 PSWYQREGYITAMANLIEKELQNFDSPEQVMIFFSAHGVPLAYVEEAGDPYKAEMEECVDLIMEELEKRKITNAYTLAYQ 180 (355)
Q Consensus 101 ~~~~~~p~yi~a~~~~I~~~l~~~~~~~~~~llfsaHgiP~~~v~~~GDpY~~~~~~ta~~v~e~l~~~~~~~~~~l~fQ 180 (355)
+++|-+|.....+++.|.++|.+.+...+ ..+- .+.+-|..++.++-+.+.+.+... .+.--++|-
T Consensus 95 PH~Wldp~n~~~~a~~I~~~L~~~dP~~~-----------~~y~-~N~~~~~~~l~~l~~~~~~~~~~~--~~~~~v~~H 160 (264)
T cd01020 95 PHLWYDPETMSKVANALADALVKADPDNK-----------KYYQ-ANAKKFVASLKPLAAKIAELSAKY--KGAPVAATE 160 (264)
T ss_pred CceecCHhHHHHHHHHHHHHHHHhCcccH-----------HHHH-HHHHHHHHHHHHHHHHHHHHHhhC--CCCeEEEeC
Confidence 57899999999999999999987642111 0111 334556667777766676665321 111111111
Q ss_pred e-------cccCC------------CCCCCcH---HHHHHHHHhcCCceEEEEcceecccchhhHHHHHHHHHHHHHhcC
Q 018479 181 S-------RVGPV------------EWLKPYT---DETIIKLGQKGVKSLLAVPISFVSEHIETLEEIDVEYKELALKSG 238 (355)
Q Consensus 181 S-------~~G~~------------~Wl~P~~---~d~l~~L~~~G~k~VvVvP~gFvsD~lETl~eid~e~~e~a~~~G 238 (355)
. ++|-. +=-+|+. .+.++.+.+.++ +++++-+.|-+.-.+++. +++++.|
T Consensus 161 ~af~Y~~~~yGl~~~~~~~~~~~~~~~~~ps~~~l~~l~~~ik~~~v-~~if~e~~~~~k~~~~l~-------~la~~~~ 232 (264)
T cd01020 161 PVFDYLLDALGMKERTPKGYTATTESETEPSPADIAAFQNAIKNRQI-DALIVNPQQASSATTNIT-------GLAKRSG 232 (264)
T ss_pred chHHHHHHHCCCcccCHHHHHhhhcCCCCCCHHHHHHHHHHHHhCCC-CEEEeCCCCCcHHHHHHH-------HHHHHcC
Confidence 1 12210 0123443 333333344454 466667777776666543 4566778
Q ss_pred CceEEEc-CCCCCCHHHHHHHHHHHH
Q 018479 239 IEKWGRV-PALGCEATFISDLADAVI 263 (355)
Q Consensus 239 ~~~~~rv-~~ln~~p~fi~~La~~V~ 263 (355)
+. .... ........+++++...+.
T Consensus 233 ~~-v~~l~~~~~~~~~y~~~m~~n~~ 257 (264)
T cd01020 233 VP-VVEVTETMPNGTTYLTWMLKQVD 257 (264)
T ss_pred CC-EEeecCCCCCCCCHHHHHHHHHH
Confidence 76 3333 122222456666554443
No 101
>cd07948 DRE_TIM_HCS Saccharomyces cerevisiae homocitrate synthase and related proteins, catalytic TIM barrel domain. Homocitrate synthase (HCS) catalyzes the condensation of acetyl-CoA and alpha-ketoglutarate to form homocitrate, the first step in the lysine biosynthesis pathway. This family includes the Yarrowia lipolytica LYS1 protein as well as the Saccharomyces cerevisiae LYS20 and LYS21 proteins. This family belongs to the DRE-TIM metallolyase superfamily. DRE-TIM metallolyases include 2-isopropylmalate synthase (IPMS), alpha-isopropylmalate synthase (LeuA), 3-hydroxy-3-methylglutaryl-CoA lyase, homocitrate synthase, citramalate synthase, 4-hydroxy-2-oxovalerate aldolase, re-citrate synthase, transcarboxylase 5S, pyruvate carboxylase, AksA, and FrbC. These members all share a conserved triose-phosphate isomerase (TIM) barrel domain consisting of a core beta(8)-alpha(8) motif with the eight parallel beta strands forming an enclosed barrel surrounded by eight alpha helices. Th
Probab=50.26 E-value=2.3e+02 Score=26.86 Aligned_cols=149 Identities=7% Similarity=0.029 Sum_probs=79.5
Q ss_pred CCCHHHHHHHHHHcCCCEEEE-eecCccccccchH----HHHHHHHHHHHhcccc-CCceeEEecCCCCChHHHHHHHHH
Q 018479 43 HPFTEEAIEQIKRDGITKLVV-LPLYPQFSISTSG----SSLRLLESIFREDEYL-VNMQHTVIPSWYQREGYITAMANL 116 (355)
Q Consensus 43 ~P~i~~~l~~l~~~G~~~Ivv-lPlyPqyS~~ttg----s~~~~~~e~~~~~~~~-~~~~~~~i~~~~~~p~yi~a~~~~ 116 (355)
.|..+ .++...+.|++.|.+ +|..+.+.....+ -+.+.+.+..+..+.. -.+.+.....|...+.++..++++
T Consensus 71 r~~~~-di~~a~~~g~~~i~i~~~~S~~~~~~~~~~~~~e~~~~~~~~i~~a~~~G~~v~~~~eda~r~~~~~l~~~~~~ 149 (262)
T cd07948 71 RCHMD-DARIAVETGVDGVDLVFGTSPFLREASHGKSITEIIESAVEVIEFVKSKGIEVRFSSEDSFRSDLVDLLRVYRA 149 (262)
T ss_pred cCCHH-HHHHHHHcCcCEEEEEEecCHHHHHHHhCCCHHHHHHHHHHHHHHHHHCCCeEEEEEEeeCCCCHHHHHHHHHH
Confidence 34444 355556678886654 4555433332222 2223333333222211 234556667788888888777666
Q ss_pred HHHHHHhCCCCCceEEEEeeCCCchhhhcccCCchHHHHHHHHHHHHHHhcccccCCceeEEEEecccCCCCCCCcHHHH
Q 018479 117 IEKELQNFDSPEQVMIFFSAHGVPLAYVEEAGDPYKAEMEECVDLIMEELEKRKITNAYTLAYQSRVGPVEWLKPYTDET 196 (355)
Q Consensus 117 I~~~l~~~~~~~~~~llfsaHgiP~~~v~~~GDpY~~~~~~ta~~v~e~l~~~~~~~~~~l~fQS~~G~~~Wl~P~~~d~ 196 (355)
+.++- .+ .+.+ .+.-|--++.++.++.+.+++.++. .+.|-.+-. ++=.+...
T Consensus 150 ~~~~g-----~~--~i~l---------~Dt~G~~~P~~v~~~~~~~~~~~~~-------~i~~H~Hn~----~Gla~an~ 202 (262)
T cd07948 150 VDKLG-----VN--RVGI---------ADTVGIATPRQVYELVRTLRGVVSC-------DIEFHGHND----TGCAIANA 202 (262)
T ss_pred HHHcC-----CC--EEEE---------CCcCCCCCHHHHHHHHHHHHHhcCC-------eEEEEECCC----CChHHHHH
Confidence 65431 12 2333 1123556788999999999887642 234443321 13446666
Q ss_pred HHHHHhcCCceEEEE--cceecccch
Q 018479 197 IIKLGQKGVKSLLAV--PISFVSEHI 220 (355)
Q Consensus 197 l~~L~~~G~k~VvVv--P~gFvsD~l 220 (355)
+..+ +.|++.|-.- .+|==+.|.
T Consensus 203 ~~a~-~aG~~~vd~s~~GlGeraGn~ 227 (262)
T cd07948 203 YAAL-EAGATHIDTTVLGIGERNGIT 227 (262)
T ss_pred HHHH-HhCCCEEEEeccccccccCCc
Confidence 6665 4588876654 344444454
No 102
>cd00952 CHBPH_aldolase Trans-o-hydroxybenzylidenepyruvate hydratase-aldolase (HBPHA) and trans-2'-carboxybenzalpyruvate hydratase-aldolase (CBPHA). HBPHA catalyzes HBP to salicyaldehyde and pyruvate. This reaction is part of the degradative pathways for naphthalene and naphthalenesulfonates by bacteria. CBPHA is homologous to HBPHA and catalyzes the cleavage of CBP to 2-carboxylbenzaldehyde and pyruvate during the degradation of phenanthrene. They are member of the DHDPS family of Schiff-base-dependent class I aldolases.
Probab=49.83 E-value=2.2e+02 Score=27.52 Aligned_cols=93 Identities=16% Similarity=0.133 Sum_probs=54.1
Q ss_pred HHHHHHHHHHHHHHhcccccCCceeEEEEecccCCCCCCCcHHHHHHH---HHhcCCceEEEEcceecccchhhHHHHHH
Q 018479 152 KAEMEECVDLIMEELEKRKITNAYTLAYQSRVGPVEWLKPYTDETIIK---LGQKGVKSLLAVPISFVSEHIETLEEIDV 228 (355)
Q Consensus 152 ~~~~~~ta~~v~e~l~~~~~~~~~~l~fQS~~G~~~Wl~P~~~d~l~~---L~~~G~k~VvVvP~gFvsD~lETl~eid~ 228 (355)
..|-.+..+.+.+..+.+ +.+-.. .| ..+|+++++. ..+.|++.|+|+||.|..-.-|-+++
T Consensus 60 ~eEr~~v~~~~~~~~~gr-----vpvi~G--v~-----~~~t~~ai~~a~~A~~~Gad~vlv~~P~y~~~~~~~l~~--- 124 (309)
T cd00952 60 WEEKQAFVATVVETVAGR-----VPVFVG--AT-----TLNTRDTIARTRALLDLGADGTMLGRPMWLPLDVDTAVQ--- 124 (309)
T ss_pred HHHHHHHHHHHHHHhCCC-----CCEEEE--ec-----cCCHHHHHHHHHHHHHhCCCEEEECCCcCCCCCHHHHHH---
Confidence 445556666666665322 222222 22 3667776664 34569999999988766654455554
Q ss_pred HHHHHHHhc-CCceEEE-cCCC---CCCHHHHHHHH
Q 018479 229 EYKELALKS-GIEKWGR-VPAL---GCEATFISDLA 259 (355)
Q Consensus 229 e~~e~a~~~-G~~~~~r-v~~l---n~~p~fi~~La 259 (355)
-++++++.. ++.-+.| +|.. +-+++++.-|+
T Consensus 125 yf~~va~a~~~lPv~iYn~P~~tg~~l~~~~l~~L~ 160 (309)
T cd00952 125 FYRDVAEAVPEMAIAIYANPEAFKFDFPRAAWAELA 160 (309)
T ss_pred HHHHHHHhCCCCcEEEEcCchhcCCCCCHHHHHHHh
Confidence 567787766 3543444 4432 45666666554
No 103
>PF07302 AroM: AroM protein; InterPro: IPR010843 This family consists of several bacterial and archaeal AroM proteins. In Escherichia coli the aroM gene is cotranscribed with aroL []. The function of this family is unknown.
Probab=49.71 E-value=1.9e+02 Score=26.97 Aligned_cols=33 Identities=18% Similarity=0.299 Sum_probs=27.8
Q ss_pred eEEEeeecCCCCHHHHHHHHHHcCCCEEEEeec
Q 018479 34 KVYVGMRYWHPFTEEAIEQIKRDGITKLVVLPL 66 (355)
Q Consensus 34 ~V~~amry~~P~i~~~l~~l~~~G~~~IvvlPl 66 (355)
.|.++=++-.|.+.+.++++.++|++-|+++..
T Consensus 64 ~V~ls~~~v~~~lq~~i~~le~~G~d~illlCT 96 (221)
T PF07302_consen 64 QVVLSKKKVEPRLQACIAQLEAQGYDVILLLCT 96 (221)
T ss_pred EEEEEHHHHHHHHHHHHHHHHHCCCCEEEEecc
Confidence 577777888899999999999999998877655
No 104
>CHL00200 trpA tryptophan synthase alpha subunit; Provisional
Probab=49.63 E-value=91 Score=29.71 Aligned_cols=93 Identities=18% Similarity=0.149 Sum_probs=61.9
Q ss_pred HHHHHHHHHHHHHHhcccccCCceeEEEEecccCCCCCCCcHHHHHHHHHhcCCceEEEEcceecccchhhHHHHHHHHH
Q 018479 152 KAEMEECVDLIMEELEKRKITNAYTLAYQSRVGPVEWLKPYTDETIIKLGQKGVKSLLAVPISFVSEHIETLEEIDVEYK 231 (355)
Q Consensus 152 ~~~~~~ta~~v~e~l~~~~~~~~~~l~fQS~~G~~~Wl~P~~~d~l~~L~~~G~k~VvVvP~gFvsD~lETl~eid~e~~ 231 (355)
.+++.+..+.+++.... + -+-++|.+- ..+-.+++-++++++.|++.|+|.-..+ ++ ..++.
T Consensus 76 ~~~~~~~~~~~r~~~~~---p-~vlm~Y~N~-----i~~~G~e~F~~~~~~aGvdgviipDLP~--ee-------~~~~~ 137 (263)
T CHL00200 76 LNKILSILSEVNGEIKA---P-IVIFTYYNP-----VLHYGINKFIKKISQAGVKGLIIPDLPY--EE-------SDYLI 137 (263)
T ss_pred HHHHHHHHHHHhcCCCC---C-EEEEecccH-----HHHhCHHHHHHHHHHcCCeEEEecCCCH--HH-------HHHHH
Confidence 34455556666544221 1 166777652 2345788899999999999988864333 22 22577
Q ss_pred HHHHhcCCceEEEcCCCCCCHHHHHHHHHHHH
Q 018479 232 ELALKSGIEKWGRVPALGCEATFISDLADAVI 263 (355)
Q Consensus 232 e~a~~~G~~~~~rv~~ln~~p~fi~~La~~V~ 263 (355)
+.++++|+. +...=.++++++-++.+++...
T Consensus 138 ~~~~~~gi~-~I~lv~PtT~~eri~~i~~~a~ 168 (263)
T CHL00200 138 SVCNLYNIE-LILLIAPTSSKSRIQKIARAAP 168 (263)
T ss_pred HHHHHcCCC-EEEEECCCCCHHHHHHHHHhCC
Confidence 888899996 5566678888888887777665
No 105
>PTZ00322 6-phosphofructo-2-kinase/fructose-2,6-biphosphatase; Provisional
Probab=47.69 E-value=1.3e+02 Score=32.45 Aligned_cols=25 Identities=8% Similarity=-0.212 Sum_probs=22.4
Q ss_pred cccCCCchhHHHHHHHHHHHHHHhc
Q 018479 4 CFVLVLSLAIISCIQAEELRKSLWE 28 (355)
Q Consensus 4 ~igggSPL~~~t~~qa~~l~~~L~~ 28 (355)
.+||-|||.+.-++||++|.+.|.+
T Consensus 437 r~~Gd~pLt~~G~~qA~~l~~~l~~ 461 (664)
T PTZ00322 437 RIGGNSRLTERGRAYSRALFEYFQK 461 (664)
T ss_pred ccCCCCccCHHHHHHHHHHHHHHHh
Confidence 4678899999999999999999975
No 106
>TIGR02990 ectoine_eutA ectoine utilization protein EutA. Members of this protein family are EutA, a predicted arylmalonate decarboxylase found in a conserved ectoine utilization operon of species that include Sinorhizobium meliloti 1021 (where it is known to be induced by ectoine), Mesorhizobium loti and Silicibacter pomeroyi. It is missing from two other species with the other ectoine transport and utilization genes: Pseudomonas putida and Agrobacterium tumefaciens.
Probab=47.26 E-value=37 Score=31.88 Aligned_cols=55 Identities=16% Similarity=0.208 Sum_probs=36.4
Q ss_pred CCCCCcHHHHHHHHHhcCCceEEEEcceecccchhhHHHHHHHHHHHHHhcCCceEEEcCCCCCC
Q 018479 187 EWLKPYTDETIIKLGQKGVKSLLAVPISFVSEHIETLEEIDVEYKELALKSGIEKWGRVPALGCE 251 (355)
Q Consensus 187 ~Wl~P~~~d~l~~L~~~G~k~VvVvP~gFvsD~lETl~eid~e~~e~a~~~G~~~~~rv~~ln~~ 251 (355)
+.+.|... .++.|.+.|+|+|.|+-| | ..++....++..++.|++ .....++|..
T Consensus 103 p~tt~~~A-~~~AL~alg~~RIalvTP-Y-------~~~v~~~~~~~l~~~G~e-V~~~~~~~~~ 157 (239)
T TIGR02990 103 PVVTPSSA-AVDGLAALGVRRISLLTP-Y-------TPETSRPMAQYFAVRGFE-IVNFTCLGLT 157 (239)
T ss_pred CeeCHHHH-HHHHHHHcCCCEEEEECC-C-------cHHHHHHHHHHHHhCCcE-EeeeeccCCC
Confidence 33445443 677777889999999944 2 234444667888888985 6566556664
No 107
>COG0761 lytB 4-Hydroxy-3-methylbut-2-enyl diphosphate reductase IspH [Lipid metabolism]
Probab=46.87 E-value=55 Score=31.76 Aligned_cols=65 Identities=25% Similarity=0.428 Sum_probs=37.3
Q ss_pred EEecCCCCChHHHHHHHHHHHHH----HHhCC-CCCceEEEEeeCCCchhhhc---ccC-------CchHHHHHHHHHHH
Q 018479 98 TVIPSWYQREGYITAMANLIEKE----LQNFD-SPEQVMIFFSAHGVPLAYVE---EAG-------DPYKAEMEECVDLI 162 (355)
Q Consensus 98 ~~i~~~~~~p~yi~a~~~~I~~~----l~~~~-~~~~~~llfsaHgiP~~~v~---~~G-------DpY~~~~~~ta~~v 162 (355)
.|+++=-.|-.++ .+++++. ++.++ .|+...+||||||+|...-+ .+| .|+...++..++..
T Consensus 34 Iyv~~eIVHN~~V---v~~L~~~g~~fve~l~e~p~~~~VIfsAHGVs~~v~~~a~~r~l~v~DATCPlVtKvh~~v~~~ 110 (294)
T COG0761 34 IYVRHEIVHNRYV---VDRLREKGAIFVEELDEVPDGATVIFSAHGVSPAVREEAKERGLKVIDATCPLVTKVHKEVERY 110 (294)
T ss_pred eEEEeccccCHHH---HHHHHHcCCEeccccccCCCCCEEEEECCCCCHHHHHHHHHCCCEEEecCCCcchHHHHHHHHH
Confidence 3555544454444 4444432 22221 24556899999999977542 233 47777777777666
Q ss_pred HHH
Q 018479 163 MEE 165 (355)
Q Consensus 163 ~e~ 165 (355)
+++
T Consensus 111 ~~~ 113 (294)
T COG0761 111 ARE 113 (294)
T ss_pred HhC
Confidence 543
No 108
>PRK13111 trpA tryptophan synthase subunit alpha; Provisional
Probab=46.19 E-value=1.6e+02 Score=27.91 Aligned_cols=73 Identities=15% Similarity=0.161 Sum_probs=50.2
Q ss_pred eeEEEEecccCCCCCCCcHHHHHHHHHhcCCceEEEEcceecccchhhHHHHHHHHHHHHHhcCCceEEEcCCCCCCHHH
Q 018479 175 YTLAYQSRVGPVEWLKPYTDETIIKLGQKGVKSLLAVPISFVSEHIETLEEIDVEYKELALKSGIEKWGRVPALGCEATF 254 (355)
Q Consensus 175 ~~l~fQS~~G~~~Wl~P~~~d~l~~L~~~G~k~VvVvP~gFvsD~lETl~eid~e~~e~a~~~G~~~~~rv~~ln~~p~f 254 (355)
+-++|.+-+ .+-.+++-++++++.|++.++|.-..+ |-..++.+.+.++|+. ....=.++++++-
T Consensus 93 vlm~Y~N~i-----~~~G~e~f~~~~~~aGvdGviipDLp~---------ee~~~~~~~~~~~gl~-~I~lvap~t~~er 157 (258)
T PRK13111 93 VLMTYYNPI-----FQYGVERFAADAAEAGVDGLIIPDLPP---------EEAEELRAAAKKHGLD-LIFLVAPTTTDER 157 (258)
T ss_pred EEEecccHH-----hhcCHHHHHHHHHHcCCcEEEECCCCH---------HHHHHHHHHHHHcCCc-EEEEeCCCCCHHH
Confidence 567776522 245788899999999999998853322 2222577888899987 4444458888887
Q ss_pred HHHHHHHH
Q 018479 255 ISDLADAV 262 (355)
Q Consensus 255 i~~La~~V 262 (355)
++.+++.-
T Consensus 158 i~~i~~~s 165 (258)
T PRK13111 158 LKKIASHA 165 (258)
T ss_pred HHHHHHhC
Confidence 77776653
No 109
>PRK05678 succinyl-CoA synthetase subunit alpha; Validated
Probab=46.07 E-value=39 Score=32.74 Aligned_cols=52 Identities=12% Similarity=0.203 Sum_probs=38.5
Q ss_pred CCcHHHHHHHHHhcCCceEEEEcceecccchhhHHHHHHHHHHHHHhcCCceEEEcCCCC
Q 018479 190 KPYTDETIIKLGQKGVKSLLAVPISFVSEHIETLEEIDVEYKELALKSGIEKWGRVPALG 249 (355)
Q Consensus 190 ~P~~~d~l~~L~~~G~k~VvVvP~gFvsD~lETl~eid~e~~e~a~~~G~~~~~rv~~ln 249 (355)
.+.+.++++++.+.|+|.++|+.=||- +.+ ..+.++.+++.|+. +.=..|++
T Consensus 75 ~~~v~~~l~e~~~~gvk~avI~s~Gf~------~~~-~~~l~~~a~~~gir-vlGPNc~G 126 (291)
T PRK05678 75 PPFAADAILEAIDAGIDLIVCITEGIP------VLD-MLEVKAYLERKKTR-LIGPNCPG 126 (291)
T ss_pred HHHHHHHHHHHHHCCCCEEEEECCCCC------HHH-HHHHHHHHHHcCCE-EECCCCCc
Confidence 367899999999999999999998984 111 13678888888874 54445543
No 110
>PRK07239 bifunctional uroporphyrinogen-III synthetase/response regulator domain protein; Validated
Probab=45.72 E-value=3.1e+02 Score=27.09 Aligned_cols=46 Identities=17% Similarity=0.023 Sum_probs=31.3
Q ss_pred HHHHHHHHHhccCCCceEEEeeecCCC----CHHHHHHHHHHcCCCEEEE
Q 018479 18 QAEELRKSLWEKNLPAKVYVGMRYWHP----FTEEAIEQIKRDGITKLVV 63 (355)
Q Consensus 18 qa~~l~~~L~~~~~~~~V~~amry~~P----~i~~~l~~l~~~G~~~Ivv 63 (355)
|+..+.+.|.+.|.++.+...++..++ .+.+++.++....++-||+
T Consensus 21 ~a~~la~~L~~~G~~~~~~P~i~i~~~~~~~~~~~~~~~l~~~~~d~vvf 70 (381)
T PRK07239 21 RAEELAALLERRGARVVHAPALRIVPLADDDELRAATRALIAAPPDIVVA 70 (381)
T ss_pred CHHHHHHHHHHcCCeEEEecCEEEecCCCcHHHHHHHHHHHcCCCCEEEE
Confidence 678888888888877655555554443 4566677776567887666
No 111
>cd00954 NAL N-Acetylneuraminic acid aldolase, also called N-acetylneuraminate lyase (NAL), which catalyses the reversible aldol reaction of N-acetyl-D-mannosamine and pyruvate to give N-acetyl-D-neuraminic acid (D-sialic acid). It has a widespread application as biocatalyst for the synthesis of sialic acid and its derivatives. This enzyme has been shown to be quite specific for pyruvate as the donor, but flexible to a variety of D- and, to some extent, L-hexoses and pentoses as acceptor substrates. NAL is member of dihydrodipicolinate synthase family that comprises several pyruvate-dependent class I aldolases.
Probab=45.64 E-value=2.7e+02 Score=26.43 Aligned_cols=94 Identities=15% Similarity=0.193 Sum_probs=53.9
Q ss_pred HHHHHHHHHHHHHHhcccccCCceeEEEEecccCCCCCCCcHHHHHHH---HHhcCCceEEEEcceecccchhhHHHHHH
Q 018479 152 KAEMEECVDLIMEELEKRKITNAYTLAYQSRVGPVEWLKPYTDETIIK---LGQKGVKSLLAVPISFVSEHIETLEEIDV 228 (355)
Q Consensus 152 ~~~~~~ta~~v~e~l~~~~~~~~~~l~fQS~~G~~~Wl~P~~~d~l~~---L~~~G~k~VvVvP~gFvsD~lETl~eid~ 228 (355)
..|=.+..+.+.+..+. +..+-.+. | ..+++++++. ..+.|++.|+++||.|..-+-|.+++
T Consensus 53 ~~Er~~~~~~~~~~~~~-----~~~viagv--~-----~~~~~~ai~~a~~a~~~Gad~v~~~~P~y~~~~~~~i~~--- 117 (288)
T cd00954 53 VEERKQIAEIVAEAAKG-----KVTLIAHV--G-----SLNLKESQELAKHAEELGYDAISAITPFYYKFSFEEIKD--- 117 (288)
T ss_pred HHHHHHHHHHHHHHhCC-----CCeEEecc--C-----CCCHHHHHHHHHHHHHcCCCEEEEeCCCCCCCCHHHHHH---
Confidence 33444455555555432 23444443 2 4677777764 45679999999998776533344443
Q ss_pred HHHHHHHhc-CCceEEE-cCC---CCCCHHHHHHHHH
Q 018479 229 EYKELALKS-GIEKWGR-VPA---LGCEATFISDLAD 260 (355)
Q Consensus 229 e~~e~a~~~-G~~~~~r-v~~---ln~~p~fi~~La~ 260 (355)
-++++++.. +..-+.| .|. .+-+++++..|++
T Consensus 118 ~~~~v~~a~~~lpi~iYn~P~~tg~~l~~~~~~~L~~ 154 (288)
T cd00954 118 YYREIIAAAASLPMIIYHIPALTGVNLTLEQFLELFE 154 (288)
T ss_pred HHHHHHHhcCCCCEEEEeCccccCCCCCHHHHHHHhc
Confidence 567777766 4443333 332 3456777766664
No 112
>TIGR02717 AcCoA-syn-alpha acetyl coenzyme A synthetase (ADP forming), alpha domain. Although technically reversible, it is believed that this group of ADP-dependent acetyl-CoA synthetases (ACS) act in the direction of acetate and ATP production in the organisms in which it has been characterized. In most species this protein exists as a fused alpha-beta domain polypeptide. In Pyrococcus and related species, however the domains exist as separate polypeptides. This model represents the alpha (N-terminal) domain. In Pyrococcus and related species there appears to have been the development of a paralogous family such that four other proteins are close relatives. In reference, one of these (along with its beta-domain partner) was characterized as ACS-II showing specificity for phenylacetyl-CoA. This model has been constructed to exclude these non-ACS-I paralogs. This may result in new, authentic ACS-I sequences falling below the trusted cutoff.
Probab=45.57 E-value=52 Score=33.75 Aligned_cols=56 Identities=27% Similarity=0.348 Sum_probs=40.0
Q ss_pred CcHHHHHHHHHhcCCceEEEEcceecccchhhHHHHHHHHHHHHHhcCCceEEEcCCC
Q 018479 191 PYTDETIIKLGQKGVKSLLAVPISFVSEHIETLEEIDVEYKELALKSGIEKWGRVPAL 248 (355)
Q Consensus 191 P~~~d~l~~L~~~G~k~VvVvP~gFvsD~lETl~eid~e~~e~a~~~G~~~~~rv~~l 248 (355)
..+.+.++++.+.|++.++++.=||-....| =.++..+..+.+++.|+. +.=..|+
T Consensus 75 ~~~~~~l~e~~~~gv~~~vi~s~gf~e~g~~-g~~~~~~l~~~a~~~gir-vlGPnc~ 130 (447)
T TIGR02717 75 KYVPQVVEECGEKGVKGAVVITAGFKEVGEE-GAELEQELVEIARKYGMR-LLGPNCL 130 (447)
T ss_pred HHHHHHHHHHHhcCCCEEEEECCCccccCcc-hHHHHHHHHHHHHHcCCE-EEecCee
Confidence 5678899999999999999988888765443 123445778888888874 5544443
No 113
>PRK03906 mannonate dehydratase; Provisional
Probab=45.45 E-value=39 Score=34.16 Aligned_cols=66 Identities=20% Similarity=0.341 Sum_probs=45.2
Q ss_pred CCCCCcHHHHHHHHHhcCCceEEEEcceecccchhhHHHHHHHHHHHHHhcCCceEEEcCCCCCCHHH
Q 018479 187 EWLKPYTDETIIKLGQKGVKSLLAVPISFVSEHIETLEEIDVEYKELALKSGIEKWGRVPALGCEATF 254 (355)
Q Consensus 187 ~Wl~P~~~d~l~~L~~~G~k~VvVvP~gFvsD~lETl~eid~e~~e~a~~~G~~~~~rv~~ln~~p~f 254 (355)
.|.+|+-...|+.+.+.|++.||..-...-..-+=++.+|. +.++..+++|+. +..+++++-|...
T Consensus 6 rw~g~~d~~~l~~~rQ~G~~~iv~~l~~~~~g~~W~~~~i~-~~~~~ie~~Gl~-~~vvEs~pv~~~I 71 (385)
T PRK03906 6 RWFGPNDPVTLEDIRQPGATGIVTALHDIPVGEVWPVEEIL-ARKAEIEAAGLE-WSVVESVPVHEDI 71 (385)
T ss_pred EEeCCCCcchHHHHhcCCCCceeecCCCCCCCCCCCHHHHH-HHHHHHHHcCCe-EEEEeCCCccHHH
Confidence 58899888899999999999999653221122222223322 356777889985 8889998888644
No 114
>PRK13125 trpA tryptophan synthase subunit alpha; Provisional
Probab=45.35 E-value=2.3e+02 Score=26.34 Aligned_cols=63 Identities=14% Similarity=0.184 Sum_probs=38.9
Q ss_pred cHHHHHHHHHhcCCceEEEEcceecccchhhHHHHHHHHHHHHHhcCCceEEEcCCCCCCHHHHHHHHHH
Q 018479 192 YTDETIIKLGQKGVKSLLAVPISFVSEHIETLEEIDVEYKELALKSGIEKWGRVPALGCEATFISDLADA 261 (355)
Q Consensus 192 ~~~d~l~~L~~~G~k~VvVvP~gFvsD~lETl~eid~e~~e~a~~~G~~~~~rv~~ln~~p~fi~~La~~ 261 (355)
..++-++++.+.|++.|++.-. ++|+..++. +..+.++++|++ ...+=.++++.+-++.+.+.
T Consensus 89 ~~~~~i~~~~~~Gadgvii~dl-----p~e~~~~~~-~~~~~~~~~Gl~-~~~~v~p~T~~e~l~~~~~~ 151 (244)
T PRK13125 89 SLDNFLNMARDVGADGVLFPDL-----LIDYPDDLE-KYVEIIKNKGLK-PVFFTSPKFPDLLIHRLSKL 151 (244)
T ss_pred CHHHHHHHHHHcCCCEEEECCC-----CCCcHHHHH-HHHHHHHHcCCC-EEEEECCCCCHHHHHHHHHh
Confidence 5566788899999988887311 134333332 466777899987 33444466666666555544
No 115
>PF01902 ATP_bind_4: ATP-binding region; InterPro: IPR002761 This domain is about 200 amino acids long with a strongly conserved motif SGGKD at the N-terminal. The structure of Q8U2K6 from SWISSPROT from Pyrococcus furiosus has been resolved to 2.7A and is suggested to be a putative N-type pytophosphatase. In some members of the family e.g. Q12429 from SWISSPROT, this domain is associated with IPR006175 from INTERPRO, another domain of unknown function. Proteins with this uncharacterised domain include two apparent ortholog families in the archaea, one of which is universal among the first four completed archaeal genomes. The domain comprises the full length of the archaeal proteins and the first third of fungal proteins.; PDB: 3RK0_A 3RK1_A 3RJZ_A 2D13_D.
Probab=44.65 E-value=69 Score=29.67 Aligned_cols=50 Identities=16% Similarity=0.240 Sum_probs=31.7
Q ss_pred CCchHHHHHHHHHHHHHHhcccccCCceeEEEEecccCCCCCCCcHHHHHHHHHhcCCceEEEE
Q 018479 148 GDPYKAEMEECVDLIMEELEKRKITNAYTLAYQSRVGPVEWLKPYTDETIIKLGQKGVKSLLAV 211 (355)
Q Consensus 148 GDpY~~~~~~ta~~v~e~l~~~~~~~~~~l~fQS~~G~~~Wl~P~~~d~l~~L~~~G~k~VvVv 211 (355)
||-+........+.+.+++|... +.. =|-. +.++.++++.+.|.+.++|.
T Consensus 92 GdI~~~~~r~~~e~vc~~lGl~~------~~P-------LW~~-d~~~ll~e~i~~Gf~aiIv~ 141 (218)
T PF01902_consen 92 GDIDSEYQRNWVERVCERLGLEA------VFP-------LWGR-DREELLREFIESGFEAIIVK 141 (218)
T ss_dssp -TTS-HHHHHHHHHHHHHCT-EE------E-T-------TTT---HHHHHHHHHHTT-EEEEEE
T ss_pred CcCCcHHHHHHHHHHHHHcCCEE------Eec-------ccCC-CHHHHHHHHHHCCCeEEEEE
Confidence 88887777778888888887531 111 1533 55679999999999887774
No 116
>PF02645 DegV: Uncharacterised protein, DegV family COG1307; InterPro: IPR003797 This family of proteins is related to DegV of Bacillus subtilis and includes paralogous sets in several species (B. subtilis, Deinococcus radiodurans, Mycoplasma pneumoniae) that are closer in percent identity to each other than to most homologs from other species. This suggests both recent paralogy and diversity of function.; PDB: 2DT8_A 3LUP_A 3NYI_B 3PL5_A 1PZX_B 1MGP_A 1VPV_B 3FYS_A 3EGL_C 3JR7_A ....
Probab=43.62 E-value=1.4e+02 Score=28.41 Aligned_cols=61 Identities=23% Similarity=0.290 Sum_probs=33.9
Q ss_pred CCCCHHH---HHHHHHHcCCCEEEEeecCccccccchHHHHHHHHHHHHhccccCCceeEEecCCCCChHHH
Q 018479 42 WHPFTEE---AIEQIKRDGITKLVVLPLYPQFSISTSGSSLRLLESIFREDEYLVNMQHTVIPSWYQREGYI 110 (355)
Q Consensus 42 ~~P~i~~---~l~~l~~~G~~~IvvlPlyPqyS~~ttgs~~~~~~e~~~~~~~~~~~~~~~i~~~~~~p~yi 110 (355)
+.|+..+ +++++..+|+++|+++++....|. |......+.+.+ ++.+++++++.....+.-
T Consensus 61 S~ps~~~~~~~f~~~~~~gyd~ii~i~iSs~LSg--ty~~a~~aa~~~------~~~~i~ViDS~~~s~g~g 124 (280)
T PF02645_consen 61 SQPSPGEFEEAFEKLLEEGYDEIIVITISSGLSG--TYNSARLAAKML------PDIKIHVIDSKSVSAGQG 124 (280)
T ss_dssp E---HHHHHHHHHHHHHTTTSEEEEEES-TTT-T--HHHHHHHHHHHH------TTTEEEEEE-SS-HHHHH
T ss_pred cCCCHHHHHHHHHHHHHCCCCeEEEEeCCcchhh--HHHHHHHHHhhc------CcCEEEEEeCCCcchhhh
Confidence 6888774 555666789999999999654332 222222222222 566899999987665544
No 117
>TIGR02631 xylA_Arthro xylose isomerase, Arthrobacter type. This model describes a D-xylose isomerase that is also active as a D-glucose isomerase. It is tetrameric and dependent on a divalent cation Mg2+, Co2+ or Mn2+ as characterized in Arthrobacter. Members of this family differ substantially from the D-xylose isomerases of family TIGR02630.
Probab=42.98 E-value=50 Score=33.23 Aligned_cols=62 Identities=19% Similarity=0.287 Sum_probs=41.2
Q ss_pred ceeEEEEec--ccC--CCCCCCcHHHHHHHHHhcCCceEEEE-----cceecccchhhHHHHHHHHHHHHHhcCCc
Q 018479 174 AYTLAYQSR--VGP--VEWLKPYTDETIIKLGQKGVKSLLAV-----PISFVSEHIETLEEIDVEYKELALKSGIE 240 (355)
Q Consensus 174 ~~~l~fQS~--~G~--~~Wl~P~~~d~l~~L~~~G~k~VvVv-----P~gFvsD~lETl~eid~e~~e~a~~~G~~ 240 (355)
-|.++||++ +|. .+|+ +..+.++++++.|++.|=+- |++.....-+ ..-.+.++..++.|+.
T Consensus 13 ~w~~~~~~~~~~g~~~~~~~--~~~e~i~~la~~GfdgVE~~~~dl~P~~~~~~e~~---~~~~~lk~~L~~~GL~ 83 (382)
T TIGR02631 13 LWTVGWVGRDPFGDATRTAL--DPVEAVHKLAELGAYGVTFHDDDLIPFGAPPQERD---QIVRRFKKALDETGLK 83 (382)
T ss_pred eeccCCCCCCCCCCCCCCCc--CHHHHHHHHHHhCCCEEEecccccCCCCCChhHHH---HHHHHHHHHHHHhCCe
Confidence 399999988 343 4563 77899999999999988764 3322211111 1123578888899986
No 118
>PRK05660 HemN family oxidoreductase; Provisional
Probab=42.36 E-value=3.6e+02 Score=26.84 Aligned_cols=114 Identities=15% Similarity=0.237 Sum_probs=65.8
Q ss_pred hHHHHHHHHHHHHHHHhCCCCCceEEEEeeCCCchhhhcccCCch---HHHHHHHHHHHHHHhcccccCCceeEEEEecc
Q 018479 107 EGYITAMANLIEKELQNFDSPEQVMIFFSAHGVPLAYVEEAGDPY---KAEMEECVDLIMEELEKRKITNAYTLAYQSRV 183 (355)
Q Consensus 107 p~yi~a~~~~I~~~l~~~~~~~~~~llfsaHgiP~~~v~~~GDpY---~~~~~~ta~~v~e~l~~~~~~~~~~l~fQS~~ 183 (355)
..|++++.+.|+...+... ...+.-|+- +.|.|- ..++.++.+.+++.++... ..+++.-+.-
T Consensus 37 ~~Y~~~l~~Ei~~~~~~~~-~~~v~ti~~----------GGGtPs~l~~~~l~~ll~~l~~~~~~~~---~~eit~e~np 102 (378)
T PRK05660 37 DEYVDHLLADLDADLPLVQ-GREVHSIFI----------GGGTPSLFSAEAIQRLLDGVRARLPFAP---DAEITMEANP 102 (378)
T ss_pred HHHHHHHHHHHHHHhHhcc-CCceeEEEe----------CCCccccCCHHHHHHHHHHHHHhCCCCC---CcEEEEEeCc
Confidence 4599999988876443322 122334443 445553 5788888888888765431 2456655531
Q ss_pred cCCCCCCCcHHHHHHHHHhcCCceEEEEcceecccchhhH-----HHHHHHHHHHHHhcCCc
Q 018479 184 GPVEWLKPYTDETIIKLGQKGVKSLLAVPISFVSEHIETL-----EEIDVEYKELALKSGIE 240 (355)
Q Consensus 184 G~~~Wl~P~~~d~l~~L~~~G~k~VvVvP~gFvsD~lETl-----~eid~e~~e~a~~~G~~ 240 (355)
+--+.+.|+.|.+.|+.+|-+=.=+|-.+.+..+ .+--.+.-+.+++.|+.
T Consensus 103 ------~~l~~e~l~~Lk~~Gv~risiGvqS~~~~~L~~l~r~~~~~~~~~ai~~~~~~G~~ 158 (378)
T PRK05660 103 ------GTVEADRFVGYQRAGVNRISIGVQSFSEEKLKRLGRIHGPDEAKRAAKLAQGLGLR 158 (378)
T ss_pred ------CcCCHHHHHHHHHcCCCEEEeccCcCCHHHHHHhCCCCCHHHHHHHHHHHHHcCCC
Confidence 1224577888888888776665445555544433 12223344556677774
No 119
>TIGR00683 nanA N-acetylneuraminate lyase. N-acetylneuraminate lyase is also known as N-acetylneuraminic acid aldolase, sialic acid aldolase, or sialate lyase. It is an intracellular enzyme. The structure of this homotetrameric enzyme related to dihydrodipicolinate synthase is known. In Clostridium tertium, the enzyme appears to be in an operon with a secreted sialidase that releases sialic acid from host sialoglycoconjugates. In several E. coli strains, however, this enzyme is responsible for N-acetyl-D-neuraminic acid synthesis for capsule production by condensing N-acetyl-D-mannosamine and pyruvate.
Probab=42.36 E-value=3.1e+02 Score=26.18 Aligned_cols=93 Identities=16% Similarity=0.194 Sum_probs=53.4
Q ss_pred HHHHHHHHHHHHHHhcccccCCceeEEEEecccCCCCCCCcHHHHHHH---HHhcCCceEEEEcceecccchhhHHHHHH
Q 018479 152 KAEMEECVDLIMEELEKRKITNAYTLAYQSRVGPVEWLKPYTDETIIK---LGQKGVKSLLAVPISFVSEHIETLEEIDV 228 (355)
Q Consensus 152 ~~~~~~ta~~v~e~l~~~~~~~~~~l~fQS~~G~~~Wl~P~~~d~l~~---L~~~G~k~VvVvP~gFvsD~lETl~eid~ 228 (355)
..+-.+..+.+.+..+. ++.+-.+. | ..+++++++. ..+.|++.|+++||.|..=+-|-+++
T Consensus 53 ~eEr~~~~~~~~~~~~~-----~~pvi~gv--~-----~~~t~~~i~la~~a~~~Gad~v~v~~P~y~~~~~~~i~~--- 117 (290)
T TIGR00683 53 TEEKKEIFRIAKDEAKD-----QIALIAQV--G-----SVNLKEAVELGKYATELGYDCLSAVTPFYYKFSFPEIKH--- 117 (290)
T ss_pred HHHHHHHHHHHHHHhCC-----CCcEEEec--C-----CCCHHHHHHHHHHHHHhCCCEEEEeCCcCCCCCHHHHHH---
Confidence 34445555555555432 24444442 2 4677777764 34569999999998877655555554
Q ss_pred HHHHHHHhc-CCceEEE-cCC---CCCCHHHHHHHH
Q 018479 229 EYKELALKS-GIEKWGR-VPA---LGCEATFISDLA 259 (355)
Q Consensus 229 e~~e~a~~~-G~~~~~r-v~~---ln~~p~fi~~La 259 (355)
-+++++.+. +..-+.| .|. .+-+++.+..|+
T Consensus 118 yf~~v~~~~~~lpv~lYn~P~~tg~~l~~~~i~~L~ 153 (290)
T TIGR00683 118 YYDTIIAETGGLNMIVYSIPFLTGVNMGIEQFGELY 153 (290)
T ss_pred HHHHHHhhCCCCCEEEEeCccccccCcCHHHHHHHh
Confidence 567776544 3332323 332 345666666554
No 120
>PRK12677 xylose isomerase; Provisional
Probab=41.60 E-value=1.7e+02 Score=29.45 Aligned_cols=64 Identities=22% Similarity=0.258 Sum_probs=42.1
Q ss_pred ceeEEEEec--ccC--CCCCCCcHHHHHHHHHhcCCceEEEEc---ceecccchhhHHHHHHHHHHHHHhcCCc
Q 018479 174 AYTLAYQSR--VGP--VEWLKPYTDETIIKLGQKGVKSLLAVP---ISFVSEHIETLEEIDVEYKELALKSGIE 240 (355)
Q Consensus 174 ~~~l~fQS~--~G~--~~Wl~P~~~d~l~~L~~~G~k~VvVvP---~gFvsD~lETl~eid~e~~e~a~~~G~~ 240 (355)
-|.++||++ +|+ .+++ +.++.++++++.|++.|-+.. +-|-.+..|.- ..-.++++..++.|+.
T Consensus 12 ~w~~~~~~~~~~g~~~~~~~--~~~E~v~~~a~~Gf~gVElh~~~l~p~~~~~~~~~-~~~~~lk~~l~~~GL~ 82 (384)
T PRK12677 12 LWTVGWQGRDPFGDATRPPL--DPVEAVHKLAELGAYGVTFHDDDLVPFGATDAERD-RIIKRFKKALDETGLV 82 (384)
T ss_pred EeeccCCCCCCCCCCCCCCC--CHHHHHHHHHHhCCCEEEecccccCCCCCChhhhH-HHHHHHHHHHHHcCCe
Confidence 399999988 342 2232 689999999999999887753 23333333321 1223577888889986
No 121
>cd00951 KDGDH 5-dehydro-4-deoxyglucarate dehydratase, also called 5-keto-4-deoxy-glucarate dehydratase (KDGDH), which is member of dihydrodipicolinate synthase (DHDPS) family that comprises several pyruvate-dependent class I aldolases. The enzyme is involved in glucarate metabolism, and its mechanism presumbly involves a Schiff-base intermediate similar to members of DHDPS family. While in the case of Pseudomonas sp. 5-dehydro-4-deoxy-D-glucarate is degraded by KDGDH to 2,5-dioxopentanoate, in certain species of Enterobacteriaceae it is degraded instead to pyruvate and glycerate.
Probab=41.18 E-value=1.2e+02 Score=28.97 Aligned_cols=66 Identities=15% Similarity=0.112 Sum_probs=41.0
Q ss_pred cHHHHHH---HHHhcCCceEEEEcceecccchhhHHHHHHHHHHHHHhcCCceEEE-cCCCCCCHHHHHHHHH
Q 018479 192 YTDETII---KLGQKGVKSLLAVPISFVSEHIETLEEIDVEYKELALKSGIEKWGR-VPALGCEATFISDLAD 260 (355)
Q Consensus 192 ~~~d~l~---~L~~~G~k~VvVvP~gFvsD~lETl~eid~e~~e~a~~~G~~~~~r-v~~ln~~p~fi~~La~ 260 (355)
+|.++++ ...+.|++.++++||.|..-+-|.+++ -++++++..++.-+.| .+-.+-+++.+..|++
T Consensus 79 ~t~~~i~~a~~a~~~Gad~v~~~pP~y~~~~~~~i~~---~f~~v~~~~~~pi~lYn~~g~~l~~~~l~~L~~ 148 (289)
T cd00951 79 GTATAIAYAQAAEKAGADGILLLPPYLTEAPQEGLYA---HVEAVCKSTDLGVIVYNRANAVLTADSLARLAE 148 (289)
T ss_pred CHHHHHHHHHHHHHhCCCEEEECCCCCCCCCHHHHHH---HHHHHHhcCCCCEEEEeCCCCCCCHHHHHHHHh
Confidence 5555554 455679999999998876544455554 5677776655553434 2334556776666653
No 122
>TIGR00539 hemN_rel putative oxygen-independent coproporphyrinogen III oxidase. Experimentally determined examples of oxygen-independent coproporphyrinogen III oxidase, an enzyme that replaces HemF function under anaerobic conditions, belong to a family of proteins described by the model hemN. This model, hemN_rel, models a closely related protein, shorter at the amino end and lacking the region containing the motif PYRT[SC]YP found in members of the hemN family. Several species, including E. coli, Helicobacter pylori, Aquifex aeolicus, and Chlamydia trachomatis, have members of both this family and the E. coli hemN family. The member of this family from Bacillus subtilis was shown to complement an hemF/hemN double mutant of Salmonella typimurium and to prevent accumulation of coproporphyrinogen III under anaerobic conditions, but the exact role of this protein is still uncertain. It is found in a number of species that do not synthesize heme de novo.
Probab=41.08 E-value=3.6e+02 Score=26.50 Aligned_cols=127 Identities=21% Similarity=0.180 Sum_probs=70.3
Q ss_pred hHHHHHHHHHHHHHHHhCCCCCceEEEEeeCCCchhhhcccCCch---HHHHHHHHHHHHHHhcccccCCceeEEEEecc
Q 018479 107 EGYITAMANLIEKELQNFDSPEQVMIFFSAHGVPLAYVEEAGDPY---KAEMEECVDLIMEELEKRKITNAYTLAYQSRV 183 (355)
Q Consensus 107 p~yi~a~~~~I~~~l~~~~~~~~~~llfsaHgiP~~~v~~~GDpY---~~~~~~ta~~v~e~l~~~~~~~~~~l~fQS~~ 183 (355)
..|++++...|...++..+. ..+.-|+- +.|.|- ..++.++.+.|.+.+... ....++.-++-
T Consensus 30 ~~y~~~l~~Ei~~~~~~~~~-~~v~~i~~----------GGGtPs~l~~~~l~~ll~~i~~~~~~~---~~~eitie~np 95 (360)
T TIGR00539 30 EEYTQALCQDLKHALSQTDQ-EPLESIFI----------GGGTPNTLSVEAFERLFESIYQHASLS---DDCEITTEANP 95 (360)
T ss_pred HHHHHHHHHHHHHHHHhcCC-CcccEEEe----------CCCchhcCCHHHHHHHHHHHHHhCCCC---CCCEEEEEeCC
Confidence 45899998888766544321 12333432 456663 578888888887766432 12456655531
Q ss_pred cCCCCCCCcHHHHHHHHHhcCCceEEEEcceecccchhhHH-----HHHHHHHHHHHhcCCceEEE---cCCCCCCHH
Q 018479 184 GPVEWLKPYTDETIIKLGQKGVKSLLAVPISFVSEHIETLE-----EIDVEYKELALKSGIEKWGR---VPALGCEAT 253 (355)
Q Consensus 184 G~~~Wl~P~~~d~l~~L~~~G~k~VvVvP~gFvsD~lETl~-----eid~e~~e~a~~~G~~~~~r---v~~ln~~p~ 253 (355)
+ --+++.++.|.+.|+.+|-+=-=+|-.+.+..+- +--.++-+.+++.|+..+.. .-.++.+.+
T Consensus 96 ~------~lt~e~l~~l~~~Gv~risiGvqS~~~~~l~~lgR~~~~~~~~~ai~~l~~~G~~~v~~dli~GlPgqt~~ 167 (360)
T TIGR00539 96 E------LITAEWCKGLKGAGINRLSLGVQSFRDDKLLFLGRQHSAKNIAPAIETALKSGIENISLDLMYGLPLQTLN 167 (360)
T ss_pred C------CCCHHHHHHHHHcCCCEEEEecccCChHHHHHhCCCCCHHHHHHHHHHHHHcCCCeEEEeccCCCCCCCHH
Confidence 1 1345778888888877665544455544444331 22223445566777753322 333555544
No 123
>PF06821 Ser_hydrolase: Serine hydrolase; InterPro: IPR010662 This family contains a number of hypothetical bacterial proteins of unknown function, which may be cytosolic. The Crystal Structure Of The Yden Gene Product Swiss:P96671 from B. Subtilis has been solved. The structure shows an alpha-beta hydrolase fold suggesting an enzymatic function for these proteins [].; GO: 0016787 hydrolase activity; PDB: 3BDV_B 2QS9_A 1UXO_A.
Probab=40.34 E-value=51 Score=29.11 Aligned_cols=63 Identities=13% Similarity=0.290 Sum_probs=35.5
Q ss_pred EEeecCccccccchHHHHHHHHHHHHhccccCCceeEEecCCCCChHHHHHHHHHHHHHHHhCCCCCceEEEEeeCCC
Q 018479 62 VVLPLYPQFSISTSGSSLRLLESIFREDEYLVNMQHTVIPSWYQREGYITAMANLIEKELQNFDSPEQVMIFFSAHGV 139 (355)
Q Consensus 62 vvlPlyPqyS~~ttgs~~~~~~e~~~~~~~~~~~~~~~i~~~~~~p~yi~a~~~~I~~~l~~~~~~~~~~llfsaHgi 139 (355)
+++|= |..+...|-..-+++.++.. .+ ...+.| ++|.+ +.|.+.+++++...+. .++|.+||+
T Consensus 2 ~IvhG---~~~s~~~HW~~wl~~~l~~~-----~~-V~~~~~-~~P~~-~~W~~~l~~~i~~~~~----~~ilVaHSL 64 (171)
T PF06821_consen 2 LIVHG---YGGSPPDHWQPWLERQLENS-----VR-VEQPDW-DNPDL-DEWVQALDQAIDAIDE----PTILVAHSL 64 (171)
T ss_dssp EEE-----TTSSTTTSTHHHHHHHHTTS-----EE-EEEC---TS--H-HHHHHHHHHCCHC-TT----TEEEEEETH
T ss_pred EEeCC---CCCCCccHHHHHHHHhCCCC-----eE-Eecccc-CCCCH-HHHHHHHHHHHhhcCC----CeEEEEeCH
Confidence 44444 35555666666666655321 12 223445 88866 6788888888876532 288999999
No 124
>COG1038 PycA Pyruvate carboxylase [Energy production and conversion]
Probab=40.27 E-value=60 Score=36.02 Aligned_cols=60 Identities=25% Similarity=0.382 Sum_probs=45.4
Q ss_pred cHHHHHHHHHhcCCceEEEEc-ceecccchhhHHHHHHHHHHHHHhcCCceEEEcCCCCCCHHHHHHHHHHHHHhCC
Q 018479 192 YTDETIIKLGQKGVKSLLAVP-ISFVSEHIETLEEIDVEYKELALKSGIEKWGRVPALGCEATFISDLADAVIESLP 267 (355)
Q Consensus 192 ~~~d~l~~L~~~G~k~VvVvP-~gFvsD~lETl~eid~e~~e~a~~~G~~~~~rv~~ln~~p~fi~~La~~V~e~l~ 267 (355)
++++.+.-..+.|++. +-| |||+|++.| ..+.+.+.|+. | .+-.|+.++.+.+.|+.+..
T Consensus 68 ~IdeII~iAk~~gaDa--IhPGYGfLSEn~e--------fA~~c~eaGI~-F-----IGP~~e~ld~~GdKv~Ar~~ 128 (1149)
T COG1038 68 SIDEIIRIAKRSGADA--IHPGYGFLSENPE--------FARACAEAGIT-F-----IGPKPEVLDMLGDKVKARNA 128 (1149)
T ss_pred cHHHHHHHHHHcCCCe--ecCCcccccCCHH--------HHHHHHHcCCE-E-----eCCCHHHHHHhccHHHHHHH
Confidence 6787777777777643 346 899999995 56777788985 6 45689999999999876543
No 125
>cd06595 GH31_xylosidase_XylS-like This family represents an uncharacterized glycosyl hydrolase family 31 (GH31) enzyme found in bacteria and eukaryotes that is related to the XylS xylosidase of Sulfolobus solfataricus. Alpha-xylosidases catalyze the release of an alpha-xylose residue from the non-reducing end of alpha-xyloside substrates. Enzymes of the GH31 family possess a wide range of different hydrolytic activities including alpha-glucosidase (glucoamylase and sucrase-isomaltase), alpha-xylosidase, 6-alpha-glucosyltransferase, 3-alpha-isomaltosyltransferase and alpha-1,4-glucan lyase. All GH31 enzymes cleave a terminal carbohydrate moiety from a substrate that varies considerably in size, depending on the enzyme, and may be either a starch or a glycoprotein.
Probab=40.21 E-value=2.9e+02 Score=26.39 Aligned_cols=70 Identities=19% Similarity=0.159 Sum_probs=41.7
Q ss_pred CcHHHHHHHHHhcCCceEEEEcceecccchhhHHHHHHHHHHHHHhcCCceEE--EcCCCCCCHHHHHHHHHHHHHhC
Q 018479 191 PYTDETIIKLGQKGVKSLLAVPISFVSEHIETLEEIDVEYKELALKSGIEKWG--RVPALGCEATFISDLADAVIESL 266 (355)
Q Consensus 191 P~~~d~l~~L~~~G~k~VvVvP~gFvsD~lETl~eid~e~~e~a~~~G~~~~~--rv~~ln~~p~fi~~La~~V~e~l 266 (355)
|+-.+.+++|+++|.|=++.+-|..-.+.-+..|+ +.++..|..... ..+.-=.+|++.+..-+.+.+.+
T Consensus 74 Pdp~~mi~~Lh~~G~k~v~~v~P~~~~~~~~~~y~------~~~~~~~~~~~~~~~~~~D~tnp~a~~~w~~~~~~~~ 145 (292)
T cd06595 74 PDPEKLLQDLHDRGLKVTLNLHPADGIRAHEDQYP------EMAKALGVDPATEGPILFDLTNPKFMDAYFDNVHRPL 145 (292)
T ss_pred CCHHHHHHHHHHCCCEEEEEeCCCcccCCCcHHHH------HHHHhcCCCcccCCeEEecCCCHHHHHHHHHHHHHHH
Confidence 89999999999999987777755543444444443 233333332110 11223357888887766655443
No 126
>COG0159 TrpA Tryptophan synthase alpha chain [Amino acid transport and metabolism]
Probab=39.52 E-value=3.1e+02 Score=26.37 Aligned_cols=93 Identities=19% Similarity=0.164 Sum_probs=59.6
Q ss_pred HHHHHHHHHHHHHHhcccccCCceeEEEEecccCCCCCCCcHHHHHHHHHhcCCceEEEEcceecccchhhHHHHHHHHH
Q 018479 152 KAEMEECVDLIMEELEKRKITNAYTLAYQSRVGPVEWLKPYTDETIIKLGQKGVKSLLAVPISFVSEHIETLEEIDVEYK 231 (355)
Q Consensus 152 ~~~~~~ta~~v~e~l~~~~~~~~~~l~fQS~~G~~~Wl~P~~~d~l~~L~~~G~k~VvVvP~gFvsD~lETl~eid~e~~ 231 (355)
..++.++.+.+.+.=. +.+ -+-++|.+=. ..--++.-++++++.|++.++|.-.- .|...+++
T Consensus 78 ~~~~lel~~~~r~~~~--~~P-ivlm~Y~Npi-----~~~Gie~F~~~~~~~GvdGlivpDLP---------~ee~~~~~ 140 (265)
T COG0159 78 LEDTLELVEEIRAKGV--KVP-IVLMTYYNPI-----FNYGIEKFLRRAKEAGVDGLLVPDLP---------PEESDELL 140 (265)
T ss_pred HHHHHHHHHHHHhcCC--CCC-EEEEEeccHH-----HHhhHHHHHHHHHHcCCCEEEeCCCC---------hHHHHHHH
Confidence 3455566666664311 111 2567776521 13456667888899999999886211 22333577
Q ss_pred HHHHhcCCceEEEcCCCCCCHHHHHHHHHHH
Q 018479 232 ELALKSGIEKWGRVPALGCEATFISDLADAV 262 (355)
Q Consensus 232 e~a~~~G~~~~~rv~~ln~~p~fi~~La~~V 262 (355)
+.++++|+. +.+.-.+++.++.++.+++.-
T Consensus 141 ~~~~~~gi~-~I~lvaPtt~~~rl~~i~~~a 170 (265)
T COG0159 141 KAAEKHGID-PIFLVAPTTPDERLKKIAEAA 170 (265)
T ss_pred HHHHHcCCc-EEEEeCCCCCHHHHHHHHHhC
Confidence 888899996 667777999998888776654
No 127
>PF00701 DHDPS: Dihydrodipicolinate synthetase family; InterPro: IPR002220 Dihydropicolinate synthase (DHDPS) is the key enzyme in lysine biosynthesis via the diaminopimelate pathway of prokaryotes, some phycomycetes and higher plants. The enzyme catalyses the condensation of L-aspartate-beta- semialdehyde and pyruvate to dihydropicolinic acid via a ping-pong mechanism in which pyruvate binds to the enzyme by forming a Schiff-base with a lysine residue []. Three other proteins are structurally related to DHDPS and probably also act via a similar catalytic mechanism. These are Escherichia coli N-acetylneuraminate lyase (4.1.3.3 from EC) (gene nanA), which catalyzes the condensation of N-acetyl-D-mannosamine and pyruvate to form N-acetylneuraminate; Rhizobium meliloti (Sinorhizobium meliloti) protein mosA [], which is involved in the biosynthesis of the rhizopine 3-o-methyl-scyllo-inosamine; and E. coli hypothetical protein yjhH. The sequences of DHDPS from different sources are well-conserved. The structure takes the form of a homotetramer, in which 2 monomers are related by an approximate 2-fold symmetry []. Each monomer comprises 2 domains: an 8-fold alpha-/beta-barrel, and a C-terminal alpha-helical domain. The fold resembles that of N-acetylneuraminate lyase. The active site lysine is located in the barrel domain, and has access via 2 channels on the C-terminal side of the barrel.; GO: 0016829 lyase activity, 0008152 metabolic process; PDB: 3B4U_B 3S8H_A 3QZE_B 1XXX_F 3L21_F 3IRD_A 3A5F_B 3G0S_B 3DAQ_C 3UQN_A ....
Probab=39.08 E-value=3.2e+02 Score=25.82 Aligned_cols=94 Identities=18% Similarity=0.251 Sum_probs=55.0
Q ss_pred HHHHHHHHHHHHHHhcccccCCceeEEEEecccCCCCCCCcHHHHHHHH---HhcCCceEEEEcceecccchhhHHHHHH
Q 018479 152 KAEMEECVDLIMEELEKRKITNAYTLAYQSRVGPVEWLKPYTDETIIKL---GQKGVKSLLAVPISFVSEHIETLEEIDV 228 (355)
Q Consensus 152 ~~~~~~ta~~v~e~l~~~~~~~~~~l~fQS~~G~~~Wl~P~~~d~l~~L---~~~G~k~VvVvP~gFvsD~lETl~eid~ 228 (355)
.+|-.+..+.+.+..+.+ +.+-.+- | ..+++++++.. .+.|++.+++.||.|..=+-+-+++
T Consensus 53 ~~Er~~l~~~~~~~~~~~-----~~vi~gv--~-----~~st~~~i~~a~~a~~~Gad~v~v~~P~~~~~s~~~l~~--- 117 (289)
T PF00701_consen 53 DEERKELLEIVVEAAAGR-----VPVIAGV--G-----ANSTEEAIELARHAQDAGADAVLVIPPYYFKPSQEELID--- 117 (289)
T ss_dssp HHHHHHHHHHHHHHHTTS-----SEEEEEE--E-----SSSHHHHHHHHHHHHHTT-SEEEEEESTSSSCCHHHHHH---
T ss_pred HHHHHHHHHHHHHHccCc-----eEEEecC--c-----chhHHHHHHHHHHHhhcCceEEEEeccccccchhhHHHH---
Confidence 445566666666665422 3333332 2 46888887764 4569999999988766544444443
Q ss_pred HHHHHHHhcCCceEEEc-C---CCCCCHHHHHHHHH
Q 018479 229 EYKELALKSGIEKWGRV-P---ALGCEATFISDLAD 260 (355)
Q Consensus 229 e~~e~a~~~G~~~~~rv-~---~ln~~p~fi~~La~ 260 (355)
-+++++...+..-+.|- | -.+-++..+..|++
T Consensus 118 y~~~ia~~~~~pi~iYn~P~~tg~~ls~~~l~~L~~ 153 (289)
T PF00701_consen 118 YFRAIADATDLPIIIYNNPARTGNDLSPETLARLAK 153 (289)
T ss_dssp HHHHHHHHSSSEEEEEEBHHHHSSTSHHHHHHHHHT
T ss_pred HHHHHHhhcCCCEEEEECCCccccCCCHHHHHHHhc
Confidence 67888876655533332 3 34556666555554
No 128
>TIGR03202 pucB xanthine dehydrogenase accessory protein pucB. In Bacillus subtilis the expression of this protein, located in an operon with the structural subunits of xanthine dehydrogenase, has been found to be essential for XDH activity. Some members of this family appear to have a distant relationship to the MobA protein involved in molybdopterin biosynthesis, although this may be coincidental.
Probab=38.85 E-value=1.2e+02 Score=26.43 Aligned_cols=26 Identities=8% Similarity=0.063 Sum_probs=21.7
Q ss_pred cCCCCHHHHHHHHHHcCCCEEEEeec
Q 018479 41 YWHPFTEEAIEQIKRDGITKLVVLPL 66 (355)
Q Consensus 41 y~~P~i~~~l~~l~~~G~~~IvvlPl 66 (355)
.++|.++-+++.+.+.++++|+|+.=
T Consensus 24 ~g~~ll~~~i~~~~~~~~~~i~vv~~ 49 (190)
T TIGR03202 24 GETTLGSASLKTALSSRLSKVIVVIG 49 (190)
T ss_pred CCccHHHHHHHHHHhCCCCcEEEEeC
Confidence 37999999998887889998888653
No 129
>PRK09856 fructoselysine 3-epimerase; Provisional
Probab=38.55 E-value=3.2e+02 Score=25.23 Aligned_cols=157 Identities=11% Similarity=0.115 Sum_probs=72.4
Q ss_pred ecCCCCHHHHHHHHHHcCCCEEEEeecCcc-ccccchHHHHHHHHHHHHhccccCCceeEEecC----C-----CCChHH
Q 018479 40 RYWHPFTEEAIEQIKRDGITKLVVLPLYPQ-FSISTSGSSLRLLESIFREDEYLVNMQHTVIPS----W-----YQREGY 109 (355)
Q Consensus 40 ry~~P~i~~~l~~l~~~G~~~IvvlPlyPq-yS~~ttgs~~~~~~e~~~~~~~~~~~~~~~i~~----~-----~~~p~y 109 (355)
-|+.-.+++.++.+++.|++.|=+..-.|+ |....+....+++.+.+++ .++++.-+.+ | ...+..
T Consensus 9 ~~~~~~l~~~l~~~~~~G~~~vEl~~~~~~~~~~~~~~~~~~~l~~~~~~----~gl~v~s~~~~~~~~~~~~~~~~~~~ 84 (275)
T PRK09856 9 GHQRLPIEHAFRDASELGYDGIEIWGGRPHAFAPDLKAGGIKQIKALAQT----YQMPIIGYTPETNGYPYNMMLGDEHM 84 (275)
T ss_pred hheeCCHHHHHHHHHHcCCCEEEEccCCccccccccCchHHHHHHHHHHH----cCCeEEEecCcccCcCccccCCCHHH
Confidence 455557999999999999998776543332 1111111223444444433 2344433321 1 124445
Q ss_pred HHHHHHHHHHHHH---hCCCCCceEEEEeeCCCchhhhcccCCchHHHHHHHHHHHHHHhcccccCCceeEEEEecccCC
Q 018479 110 ITAMANLIEKELQ---NFDSPEQVMIFFSAHGVPLAYVEEAGDPYKAEMEECVDLIMEELEKRKITNAYTLAYQSRVGPV 186 (355)
Q Consensus 110 i~a~~~~I~~~l~---~~~~~~~~~llfsaHgiP~~~v~~~GDpY~~~~~~ta~~v~e~l~~~~~~~~~~l~fQS~~G~~ 186 (355)
.+...+.+++.++ .++ .+.-++...|. ... ...+...+.+.+..+.+.+.... ..+.+++-+.....
T Consensus 85 r~~~~~~~~~~i~~a~~lG--a~~i~~~~~~~---~~~-~~~~~~~~~~~~~l~~l~~~a~~----~gv~l~iE~~~~~~ 154 (275)
T PRK09856 85 RRESLDMIKLAMDMAKEMN--AGYTLISAAHA---GYL-TPPNVIWGRLAENLSELCEYAEN----IGMDLILEPLTPYE 154 (275)
T ss_pred HHHHHHHHHHHHHHHHHhC--CCEEEEcCCCC---CCC-CCHHHHHHHHHHHHHHHHHHHHH----cCCEEEEecCCCCc
Confidence 5555555554443 232 22222222221 111 00111222333333334433322 23788888753233
Q ss_pred CCCCCcHHHHHHHHHhcCCceEEE
Q 018479 187 EWLKPYTDETIIKLGQKGVKSLLA 210 (355)
Q Consensus 187 ~Wl~P~~~d~l~~L~~~G~k~VvV 210 (355)
.|.-++..+.++-+.+-+..++-+
T Consensus 155 ~~~~~t~~~~~~l~~~~~~~~v~~ 178 (275)
T PRK09856 155 SNVVCNANDVLHALALVPSPRLFS 178 (275)
T ss_pred ccccCCHHHHHHHHHHcCCCccee
Confidence 455566666666665556555543
No 130
>PRK13463 phosphatase PhoE; Provisional
Probab=38.43 E-value=2.8e+02 Score=24.79 Aligned_cols=124 Identities=15% Similarity=0.092 Sum_probs=61.0
Q ss_pred CCchhHHHHHHHHHHHHHHhccCCCceEEEeeecCCCCHH--HHHHHHHHc-CCCEEEEeecC-----ccccccchHHHH
Q 018479 8 VLSLAIISCIQAEELRKSLWEKNLPAKVYVGMRYWHPFTE--EAIEQIKRD-GITKLVVLPLY-----PQFSISTSGSSL 79 (355)
Q Consensus 8 gSPL~~~t~~qa~~l~~~L~~~~~~~~V~~amry~~P~i~--~~l~~l~~~-G~~~IvvlPly-----PqyS~~ttgs~~ 79 (355)
.+||.+.-.+||+.+.+.|.... +. .-|+.|... ++.+.+.+. ++. +.+-+-+ ..+...+.....
T Consensus 26 d~~Lt~~G~~Qa~~~~~~l~~~~--~~----~i~sSpl~Ra~qTA~~i~~~~~~~-~~~~~~l~E~~~G~~eG~~~~e~~ 98 (203)
T PRK13463 26 NSALTENGILQAKQLGERMKDLS--IH----AIYSSPSERTLHTAELIKGERDIP-IIADEHFYEINMGIWEGQTIDDIE 98 (203)
T ss_pred CCCcCHHHHHHHHHHHHHhcCCC--CC----EEEECCcHHHHHHHHHHHhcCCCC-ceECcCceeCCCCccCCCcHHHHh
Confidence 49999999999999999997432 22 235688766 555544332 322 2222221 111111211112
Q ss_pred HHHHHHHHhccccCCceeEEecCCCCChHHHHHHHHHHHHHHHhCC-CCCceEEEEeeCCCchhhh
Q 018479 80 RLLESIFREDEYLVNMQHTVIPSWYQREGYITAMANLIEKELQNFD-SPEQVMIFFSAHGVPLAYV 144 (355)
Q Consensus 80 ~~~~e~~~~~~~~~~~~~~~i~~~~~~p~yi~a~~~~I~~~l~~~~-~~~~~~llfsaHgiP~~~v 144 (355)
+.+++.++.....| ..+-.+.+ +.+ +.+.+|+.++++... ...+-.+|+..||-.++.+
T Consensus 99 ~~~p~~~~~~~~~~---~~~~~~~g--Es~-~~~~~R~~~~l~~i~~~~~~~~vlvVsHg~~ir~~ 158 (203)
T PRK13463 99 RQYPDDIQLFWNEP---HLFQSTSG--ENF-EAVHKRVIEGMQLLLEKHKGESILIVSHAAAAKLL 158 (203)
T ss_pred hhCHHHHHHHHhCh---hccCCCCC--eEH-HHHHHHHHHHHHHHHHhCCCCEEEEEeChHHHHHH
Confidence 22222222111111 11112222 233 355677777665431 1122258889999988865
No 131
>cd06335 PBP1_ABC_ligand_binding_like_2 Type I periplasmic ligand-binding domain of uncharacterized ABC (ATPase Binding Cassette)-type active transport systems that are predicted to be involved in transport of amino acids, peptides, or inorganic ions. This subgroup includes the type I periplasmic ligand-binding domain of uncharacterized ABC (ATPase Binding Cassette)-type active transport systems that are predicted to be involved in transport of amino acids, peptides, or inorganic ions. Members of this group are sequence-similar to members of the family of ABC-type hydrophobic amino acid transporters, such as leucine-isoleucine-valine-binding protein (LIVBP); however their ligand specificity has not been determined experimentally.
Probab=38.43 E-value=1.6e+02 Score=28.21 Aligned_cols=45 Identities=16% Similarity=0.112 Sum_probs=22.7
Q ss_pred HHHHHHHHHHhccCCCceEEEee---ecCCCCHHHHHHHHHHcCCCEE
Q 018479 17 IQAEELRKSLWEKNLPAKVYVGM---RYWHPFTEEAIEQIKRDGITKL 61 (355)
Q Consensus 17 ~qa~~l~~~L~~~~~~~~V~~am---ry~~P~i~~~l~~l~~~G~~~I 61 (355)
.|+..+.+.+.+.+..-+|.+.. .|+.-......+.+.+.|++-+
T Consensus 123 ~~~~~~a~~~~~~~~~~~v~ii~~~~~~g~~~~~~~~~~~~~~G~~v~ 170 (347)
T cd06335 123 IQAPFLVDEAVKRGGFKKVALLLDNTGWGRSNRKDLTAALAARGLKPV 170 (347)
T ss_pred HHHHHHHHHHHHhcCCCeEEEEeccCchhhhHHHHHHHHHHHcCCeeE
Confidence 34555555543332112233332 3555555666667777787743
No 132
>TIGR00695 uxuA mannonate dehydratase. This Fe2+-requiring enzyme plays a role in D-glucuronate catabolism in Escherichia coli. Mannonate dehydratase converts D-mannonate to 2-dehydro-3-deoxy-D-gluconate. An apparent equivalog is found in a glucuronate utilization operon in Bacillus stearothermophilus T-6.
Probab=38.15 E-value=61 Score=32.89 Aligned_cols=66 Identities=18% Similarity=0.353 Sum_probs=43.6
Q ss_pred CCCCCcHHHHHHHHHhcCCceEEEEcceecccchhhHHHHHHHHHHHHHhcCCceEEEcCCCCCCHHH
Q 018479 187 EWLKPYTDETIIKLGQKGVKSLLAVPISFVSEHIETLEEIDVEYKELALKSGIEKWGRVPALGCEATF 254 (355)
Q Consensus 187 ~Wl~P~~~d~l~~L~~~G~k~VvVvP~gFvsD~lETl~eid~e~~e~a~~~G~~~~~rv~~ln~~p~f 254 (355)
.|.+|+=.-.|+.+.+.|++.||..-..+-...+=++.+|. +.++..+++|+. +..+.+++-|...
T Consensus 6 rw~gp~d~v~l~~irQ~G~~giV~al~~~p~gevW~~~~i~-~~k~~ie~~GL~-~~vvEs~pv~e~I 71 (394)
T TIGR00695 6 RWYGPNDPVSLEDVRQAGATGIVTALHHIPNGEVWEKEEIR-KRKEYIESAGLH-WSVVESVPVHEAI 71 (394)
T ss_pred eeeCCCCcchHHHHhhcCCcceeecCCCCCCCCCCCHHHHH-HHHHHHHHcCCe-EEEEeCCCccHHH
Confidence 57888777788888888999999653222122222233332 356777789985 8899998888644
No 133
>PRK09545 znuA high-affinity zinc transporter periplasmic component; Reviewed
Probab=38.10 E-value=3.8e+02 Score=25.93 Aligned_cols=136 Identities=13% Similarity=0.131 Sum_probs=74.9
Q ss_pred cCCCCChHHHHHHHHHHHHHHHhCCCCCceEEEEeeCCCchhhhcccCCchHHHHHHHHHHHHHHhcccccCCceeEEEE
Q 018479 101 PSWYQREGYITAMANLIEKELQNFDSPEQVMIFFSAHGVPLAYVEEAGDPYKAEMEECVDLIMEELEKRKITNAYTLAYQ 180 (355)
Q Consensus 101 ~~~~~~p~yi~a~~~~I~~~l~~~~~~~~~~llfsaHgiP~~~v~~~GDpY~~~~~~ta~~v~e~l~~~~~~~~~~l~fQ 180 (355)
+++|-+|.....+++.|.++|.+.+.... ..+- .+.+.|.+++.+.-+.+++.+.... ...-++|-
T Consensus 145 PHiWldp~~~~~~a~~I~~~L~~~dP~~~-----------~~y~-~N~~~~~~~L~~l~~~~~~~l~~~~--~~~~i~~H 210 (311)
T PRK09545 145 MHIWLSPEIARATAVAIHDKLVELMPQSK-----------AKLD-ANLKDFEAQLAQTDKQIGNQLAPVK--GKGYFVFH 210 (311)
T ss_pred CcccCCHHHHHHHHHHHHHHHHHhChhhH-----------HHHH-HHHHHHHHHHHHHHHHHHHHhhccC--CCcEEEEC
Confidence 67999999999999999999977542111 0111 3446688888888777777764211 11112211
Q ss_pred ecc---------------cCCCCCCCcHHH---HHHHHHhcCCceEEEEcceecccchhhHHHHHHHHHHHHHhcCCceE
Q 018479 181 SRV---------------GPVEWLKPYTDE---TIIKLGQKGVKSLLAVPISFVSEHIETLEEIDVEYKELALKSGIEKW 242 (355)
Q Consensus 181 S~~---------------G~~~Wl~P~~~d---~l~~L~~~G~k~VvVvP~gFvsD~lETl~eid~e~~e~a~~~G~~~~ 242 (355)
..+ +..+=-+|+..+ .++.+.+.+++ ++++-+.|-....+ .++++.|.+ +
T Consensus 211 ~af~Yf~~~ygl~~~~~~~~~~~~eps~~~l~~l~~~ik~~~v~-~If~e~~~~~~~~~----------~la~e~g~~-v 278 (311)
T PRK09545 211 DAYGYFEKHYGLTPLGHFTVNPEIQPGAQRLHEIRTQLVEQKAT-CVFAEPQFRPAVIE----------SVAKGTSVR-M 278 (311)
T ss_pred chHHHHHHhCCCceeeeeccCCCCCCCHHHHHHHHHHHHHcCCC-EEEecCCCChHHHH----------HHHHhcCCe-E
Confidence 111 111112465544 44444555664 45555566555444 445577775 5
Q ss_pred EEcCCCCCC-----HHHHHHHHHHH
Q 018479 243 GRVPALGCE-----ATFISDLADAV 262 (355)
Q Consensus 243 ~rv~~ln~~-----p~fi~~La~~V 262 (355)
..+..+++. ..+.+.+...+
T Consensus 279 ~~ldpl~~~~~~~~~~Y~~~m~~n~ 303 (311)
T PRK09545 279 GTLDPLGTNIKLGKDSYSEFLSQLA 303 (311)
T ss_pred EEeccccccccCCHhHHHHHHHHHH
Confidence 555555422 45666665444
No 134
>PRK06582 coproporphyrinogen III oxidase; Provisional
Probab=37.86 E-value=67 Score=32.30 Aligned_cols=59 Identities=10% Similarity=0.045 Sum_probs=31.9
Q ss_pred cccCCCchhHHHHHHHHHHHHHHhcc-CCCceEEEeeecCCCCH-HHHHHHHHHcCCCEEEE
Q 018479 4 CFVLVLSLAIISCIQAEELRKSLWEK-NLPAKVYVGMRYWHPFT-EEAIEQIKRDGITKLVV 63 (355)
Q Consensus 4 ~igggSPL~~~t~~qa~~l~~~L~~~-~~~~~V~~amry~~P~i-~~~l~~l~~~G~~~Ivv 63 (355)
-||||+|..--.+++.+.+. .+.+. +.+-..++.+.-.+-++ .+-++.|++.|++||-+
T Consensus 67 y~GGGTPs~l~~~~l~~ll~-~i~~~~~~~~~~eitiE~nP~~~~~e~l~~l~~~GvnRiSi 127 (390)
T PRK06582 67 FFGGGTPSLMNPVIVEGIIN-KISNLAIIDNQTEITLETNPTSFETEKFKAFKLAGINRVSI 127 (390)
T ss_pred EECCCccccCCHHHHHHHHH-HHHHhCCCCCCCEEEEEeCCCcCCHHHHHHHHHCCCCEEEE
Confidence 47999995433333333222 22221 11111234443333334 69999999999998865
No 135
>COG1509 KamA Lysine 2,3-aminomutase [Amino acid transport and metabolism]
Probab=37.31 E-value=4.5e+02 Score=26.49 Aligned_cols=104 Identities=17% Similarity=0.253 Sum_probs=60.8
Q ss_pred cCCchHHHHHHHHHHHHHHhcccccCCceeEEEEeccc---CCCCCCCcHHHHHHHHHhcCCceEEEEcceecccchhhH
Q 018479 147 AGDPYKAEMEECVDLIMEELEKRKITNAYTLAYQSRVG---PVEWLKPYTDETIIKLGQKGVKSLLAVPISFVSEHIETL 223 (355)
Q Consensus 147 ~GDpY~~~~~~ta~~v~e~l~~~~~~~~~~l~fQS~~G---~~~Wl~P~~~d~l~~L~~~G~k~VvVvP~gFvsD~lETl 223 (355)
.|||....-++...++.+-. .+++--.+-|-||.- |.. +.+.|-++..+..+.|.++ -|+..=
T Consensus 166 GGDPL~ls~~~L~~ll~~L~---~IpHv~iiRi~TR~pvv~P~R-----It~~L~~~l~~~~~~v~~~------tH~NHp 231 (369)
T COG1509 166 GGDPLSLSDKKLEWLLKRLR---AIPHVKIIRIGTRLPVVLPQR-----ITDELCEILGKSRKPVWLV------THFNHP 231 (369)
T ss_pred CCCccccCHHHHHHHHHHHh---cCCceeEEEeecccceechhh-----ccHHHHHHHhccCceEEEE------cccCCh
Confidence 58997544444444444322 222223466777742 322 2256666666555666554 478888
Q ss_pred HHHHHHHHHHH---HhcCCc---eEEEcCCCCCCHHHHHHHHHHHHH
Q 018479 224 EEIDVEYKELA---LKSGIE---KWGRVPALGCEATFISDLADAVIE 264 (355)
Q Consensus 224 ~eid~e~~e~a---~~~G~~---~~~rv~~ln~~p~fi~~La~~V~e 264 (355)
.||+.++++.+ ...|+. .=+...-+||+++....|.+....
T Consensus 232 ~Eit~e~~~A~~~L~~aGv~l~NQsVLLrGVND~~evl~~L~~~L~~ 278 (369)
T COG1509 232 NEITPEAREACAKLRDAGVPLLNQSVLLRGVNDDPEVLKELSRALFD 278 (369)
T ss_pred hhcCHHHHHHHHHHHHcCceeecchheecccCCCHHHHHHHHHHHHH
Confidence 88888877654 355654 223456689998887766665544
No 136
>cd03174 DRE_TIM_metallolyase DRE-TIM metallolyase superfamily. The DRE-TIM metallolyase superfamily includes 2-isopropylmalate synthase (IPMS), alpha-isopropylmalate synthase (LeuA), 3-hydroxy-3-methylglutaryl-CoA lyase, homocitrate synthase, citramalate synthase, 4-hydroxy-2-oxovalerate aldolase, re-citrate synthase, transcarboxylase 5S, pyruvate carboxylase, AksA, and FrbC. These members all share a conserved triose-phosphate isomerase (TIM) barrel domain consisting of a core beta(8)-alpha(8) motif with the eight parallel beta strands forming an enclosed barrel surrounded by eight alpha helices. The domain has a catalytic center containing a divalent cation-binding site formed by a cluster of invariant residues that cap the core of the barrel. In addition, the catalytic site includes three invariant residues - an aspartate (D), an arginine (R), and a glutamate (E) - which is the basis for the domain name "DRE-TIM".
Probab=36.80 E-value=3.4e+02 Score=24.91 Aligned_cols=99 Identities=14% Similarity=0.182 Sum_probs=54.1
Q ss_pred eeEEecCCC--CChHHHHHHHHHHHHHHHhCCCCCceEEEEeeCCCchhhhcccCCchHHHHHHHHHHHHHHhcccccCC
Q 018479 96 QHTVIPSWY--QREGYITAMANLIEKELQNFDSPEQVMIFFSAHGVPLAYVEEAGDPYKAEMEECVDLIMEELEKRKITN 173 (355)
Q Consensus 96 ~~~~i~~~~--~~p~yi~a~~~~I~~~l~~~~~~~~~~llfsaHgiP~~~v~~~GDpY~~~~~~ta~~v~e~l~~~~~~~ 173 (355)
.+....-+. .++.++..+++.+.+.- .+ .+-+. ...|-.++.++.++.+.+.+..+.
T Consensus 132 ~~~~~~~~~~~~~~~~l~~~~~~~~~~g-----~~--~i~l~---------Dt~G~~~P~~v~~li~~l~~~~~~----- 190 (265)
T cd03174 132 EGSLEDAFGCKTDPEYVLEVAKALEEAG-----AD--EISLK---------DTVGLATPEEVAELVKALREALPD----- 190 (265)
T ss_pred EEEEEeecCCCCCHHHHHHHHHHHHHcC-----CC--EEEec---------hhcCCcCHHHHHHHHHHHHHhCCC-----
Confidence 334444555 77888777766655432 11 12221 023566788888888888877641
Q ss_pred ceeEEEEecccCCCCCCCcHHHHHHHHHhcCCceEEEE--cceecccchh
Q 018479 174 AYTLAYQSRVGPVEWLKPYTDETIIKLGQKGVKSLLAV--PISFVSEHIE 221 (355)
Q Consensus 174 ~~~l~fQS~~G~~~Wl~P~~~d~l~~L~~~G~k~VvVv--P~gFvsD~lE 221 (355)
..+.|-.+-. ++=.+...+..+ +.|++.|-.- ++|=-+.|.-
T Consensus 191 -~~~~~H~Hn~----~gla~an~laA~-~aG~~~id~s~~G~G~~~Gn~~ 234 (265)
T cd03174 191 -VPLGLHTHNT----LGLAVANSLAAL-EAGADRVDGSVNGLGERAGNAA 234 (265)
T ss_pred -CeEEEEeCCC----CChHHHHHHHHH-HcCCCEEEeccccccccccCcc
Confidence 3455544422 133455566555 4588776554 4554455554
No 137
>TIGR00539 hemN_rel putative oxygen-independent coproporphyrinogen III oxidase. Experimentally determined examples of oxygen-independent coproporphyrinogen III oxidase, an enzyme that replaces HemF function under anaerobic conditions, belong to a family of proteins described by the model hemN. This model, hemN_rel, models a closely related protein, shorter at the amino end and lacking the region containing the motif PYRT[SC]YP found in members of the hemN family. Several species, including E. coli, Helicobacter pylori, Aquifex aeolicus, and Chlamydia trachomatis, have members of both this family and the E. coli hemN family. The member of this family from Bacillus subtilis was shown to complement an hemF/hemN double mutant of Salmonella typimurium and to prevent accumulation of coproporphyrinogen III under anaerobic conditions, but the exact role of this protein is still uncertain. It is found in a number of species that do not synthesize heme de novo.
Probab=36.75 E-value=81 Score=31.13 Aligned_cols=16 Identities=31% Similarity=0.430 Sum_probs=9.5
Q ss_pred HHHHHHHHHcCCCEEE
Q 018479 47 EEAIEQIKRDGITKLV 62 (355)
Q Consensus 47 ~~~l~~l~~~G~~~Iv 62 (355)
++.++.|++.|+++|-
T Consensus 100 ~e~l~~l~~~Gv~ris 115 (360)
T TIGR00539 100 AEWCKGLKGAGINRLS 115 (360)
T ss_pred HHHHHHHHHcCCCEEE
Confidence 4556666666666553
No 138
>TIGR00262 trpA tryptophan synthase, alpha subunit. Tryptophan synthase catalyzes the last step in the biosynthesis of tryptophan. The alpha chain is responsible for the aldol cleavage of indoleglycerol phosphate to indole and glyceraldehyde 3-phosphate. In bacteria and plants each domain is found on a separate subunit (alpha and beta chains), while in fungi the two domains are fused together on a single multifunctional protein. The signature pattern for trpA contains three conserved acidic residues. [LIVM]-E-[LIVM]-G-x(2)-[FYC]-[ST]-[DE]-[PA]-[LIVMY]-[AGLI]-[DE]-G and this is located between residues 43-58 of the model. The Sulfolobus solfataricus trpA is known to be quite divergent from other known trpA sequences.
Probab=35.70 E-value=3.1e+02 Score=25.83 Aligned_cols=92 Identities=17% Similarity=0.182 Sum_probs=55.6
Q ss_pred HHHHHHHHHHHHHH-hcccccCCceeEEEEecccCCCCCCCcHHHHHHHHHhcCCceEEEEcceecccchhhHHHHHHHH
Q 018479 152 KAEMEECVDLIMEE-LEKRKITNAYTLAYQSRVGPVEWLKPYTDETIIKLGQKGVKSLLAVPISFVSEHIETLEEIDVEY 230 (355)
Q Consensus 152 ~~~~~~ta~~v~e~-l~~~~~~~~~~l~fQS~~G~~~Wl~P~~~d~l~~L~~~G~k~VvVvP~gFvsD~lETl~eid~e~ 230 (355)
..++.++.+.|++. ... + -+.+.|.+- . ..=-+++-++++++.|++.|++....+ | + ..++
T Consensus 71 ~~~~~~~v~~ir~~~~~~---p-lv~m~Y~Np---i--~~~G~e~f~~~~~~aGvdgviipDlp~-----e---e-~~~~ 132 (256)
T TIGR00262 71 PEKCFELLKKVRQKHPNI---P-IGLLTYYNL---I--FRKGVEEFYAKCKEVGVDGVLVADLPL-----E---E-SGDL 132 (256)
T ss_pred HHHHHHHHHHHHhcCCCC---C-EEEEEeccH---H--hhhhHHHHHHHHHHcCCCEEEECCCCh-----H---H-HHHH
Confidence 34566777777754 222 1 146777541 0 112667889999999998877763322 2 2 1246
Q ss_pred HHHHHhcCCceEEEcCCCCCCHHHHHHHHHHH
Q 018479 231 KELALKSGIEKWGRVPALGCEATFISDLADAV 262 (355)
Q Consensus 231 ~e~a~~~G~~~~~rv~~ln~~p~fi~~La~~V 262 (355)
.+.++++|+. ...+=.++++++-+..+++..
T Consensus 133 ~~~~~~~gl~-~i~lv~P~T~~eri~~i~~~~ 163 (256)
T TIGR00262 133 VEAAKKHGVK-PIFLVAPNADDERLKQIAEKS 163 (256)
T ss_pred HHHHHHCCCc-EEEEECCCCCHHHHHHHHHhC
Confidence 7778888986 444445777776666666543
No 139
>TIGR03470 HpnH hopanoid biosynthesis associated radical SAM protein HpnH. The sequences represented by this model are members of the radical SAM superfamily of enzymes (pfam04055). These enzymes utilize an iron-sulfur redox cluster and S-adenosylmethionine to carry out diverse radical mediated reactions. The members of this clade are frequently found in the same locus as squalene-hopene cyclase (SHC, TIGR01507) and other genes associated with the biosynthesis of hopanoid natural products. The linkage between SHC and this radical SAM enzyme is strong; one is nearly always observed in the same genome where the other is found. A hopanoid biosynthesis locus was described in Zymomonas mobilis consisting of the genes HpnA-E and SHC (HpnF). Continuing past SHC are found a phosphorylase enzyme (ZMO0873, i.e. HpnG, TIGR03468) and this radical SAM enzyme (ZMO0874) which we name here HpnH. Granted, in Z. mobilis, HpnH is in a convergent orientation with respect to HpnA-G, but one gene beyond HpnH
Probab=35.26 E-value=1.9e+02 Score=28.12 Aligned_cols=45 Identities=9% Similarity=0.018 Sum_probs=31.1
Q ss_pred HhccCCCceEEEe--eecCCCCHHHHHHHHHHcCCCEEEEeecCccc
Q 018479 26 LWEKNLPAKVYVG--MRYWHPFTEEAIEQIKRDGITKLVVLPLYPQF 70 (355)
Q Consensus 26 L~~~~~~~~V~~a--mry~~P~i~~~l~~l~~~G~~~IvvlPlyPqy 70 (355)
+.+.|..+.+..- .+.....+.+.++.+.+.|++.+.+.|.||..
T Consensus 158 l~~~G~~v~v~~tv~~~~n~~ei~~~~~~~~~lGv~~i~i~p~~~~~ 204 (318)
T TIGR03470 158 AKARGFRVTTNTTLFNDTDPEEVAEFFDYLTDLGVDGMTISPGYAYE 204 (318)
T ss_pred HHHCCCcEEEEEEEeCCCCHHHHHHHHHHHHHcCCCEEEEecCcccc
Confidence 3345554444332 23455668888889989999999999998853
No 140
>cd06595 GH31_xylosidase_XylS-like This family represents an uncharacterized glycosyl hydrolase family 31 (GH31) enzyme found in bacteria and eukaryotes that is related to the XylS xylosidase of Sulfolobus solfataricus. Alpha-xylosidases catalyze the release of an alpha-xylose residue from the non-reducing end of alpha-xyloside substrates. Enzymes of the GH31 family possess a wide range of different hydrolytic activities including alpha-glucosidase (glucoamylase and sucrase-isomaltase), alpha-xylosidase, 6-alpha-glucosyltransferase, 3-alpha-isomaltosyltransferase and alpha-1,4-glucan lyase. All GH31 enzymes cleave a terminal carbohydrate moiety from a substrate that varies considerably in size, depending on the enzyme, and may be either a starch or a glycoprotein.
Probab=35.12 E-value=2.7e+02 Score=26.59 Aligned_cols=109 Identities=15% Similarity=0.156 Sum_probs=61.3
Q ss_pred CchhHHHHHHHHHHHHHHhccCCCceEEEe-------------------eecCC---CCHHHHHHHHHHcCCCEEEEeec
Q 018479 9 LSLAIISCIQAEELRKSLWEKNLPAKVYVG-------------------MRYWH---PFTEEAIEQIKRDGITKLVVLPL 66 (355)
Q Consensus 9 SPL~~~t~~qa~~l~~~L~~~~~~~~V~~a-------------------mry~~---P~i~~~l~~l~~~G~~~IvvlPl 66 (355)
|.-...|++....+.+.++++++++.|.+- |.+.+ |..++-+++|+++|++ +++-+
T Consensus 17 sr~~y~s~~ev~~v~~~~r~~~iP~D~i~lD~dw~~~~~~~~~~~~~~~ft~d~~~FPdp~~mi~~Lh~~G~k--~v~~v 94 (292)
T cd06595 17 SRYWPYSDEEYLALMDRFKKHNIPLDVLVIDMDWHVTDIPSKYGSGWTGYSWNRKLFPDPEKLLQDLHDRGLK--VTLNL 94 (292)
T ss_pred hCCcCCCHHHHHHHHHHHHHhCCCccEEEEecccccccccccccCCcceeEEChhcCCCHHHHHHHHHHCCCE--EEEEe
Confidence 443345677788888888888766544321 33333 8899999999999997 44455
Q ss_pred CccccccchHHHHHHHHHHHHhcccc-CCceeEEecCCCCChHHHHHHHHHHHHHHHhC
Q 018479 67 YPQFSISTSGSSLRLLESIFREDEYL-VNMQHTVIPSWYQREGYITAMANLIEKELQNF 124 (355)
Q Consensus 67 yPqyS~~ttgs~~~~~~e~~~~~~~~-~~~~~~~i~~~~~~p~yi~a~~~~I~~~l~~~ 124 (355)
.|..+....... +++..+..... ..-....+ . ..+|.+.+.+-+.+.+.+...
T Consensus 95 ~P~~~~~~~~~~---y~~~~~~~~~~~~~~~~~~~-D-~tnp~a~~~w~~~~~~~~~~~ 148 (292)
T cd06595 95 HPADGIRAHEDQ---YPEMAKALGVDPATEGPILF-D-LTNPKFMDAYFDNVHRPLEKQ 148 (292)
T ss_pred CCCcccCCCcHH---HHHHHHhcCCCcccCCeEEe-c-CCCHHHHHHHHHHHHHHHHhc
Confidence 675322111111 22222211110 11111122 3 357999998888887766544
No 141
>PF08915 tRNA-Thr_ED: Archaea-specific editing domain of threonyl-tRNA synthetase; InterPro: IPR015011 Archaea-specific editing domain of threonyl-tRNA synthetase, with marked structural similarity to D-amino acids deacylases found in eubacteria and eukaryotes. This domain can bind D-amino acids, and ensures high fidelity during translation. It is especially responsible for removing incorrectly attached serine from tRNA-Thr. The domain forms a fold that can be defined as two layers of beta-sheets (a three-stranded sheet and a five-stranded sheet), with two alpha-helices located adjacent to the five-stranded sheet []. ; GO: 0004829 threonine-tRNA ligase activity, 0005524 ATP binding, 0008270 zinc ion binding, 0005737 cytoplasm; PDB: 3PD4_B 3PD3_A 2HL0_A 2HL1_A 2HKZ_A 3PD5_B 2HL2_A 3PD2_B 1Y2Q_A.
Probab=34.42 E-value=1.5e+02 Score=25.58 Aligned_cols=21 Identities=14% Similarity=0.282 Sum_probs=14.6
Q ss_pred HhcCCceEEEEcceecccchh
Q 018479 201 GQKGVKSLLAVPISFVSEHIE 221 (355)
Q Consensus 201 ~~~G~k~VvVvP~gFvsD~lE 221 (355)
.+-|+++|++.|++=+|+++.
T Consensus 68 ~kv~~~~ivlyPyAHLSs~La 88 (138)
T PF08915_consen 68 KKVKAKRIVLYPYAHLSSSLA 88 (138)
T ss_dssp HHTT-SEEEEEE-GGGSSSB-
T ss_pred HhcCCCEEEEeCcccccCCcC
Confidence 345888999999998888774
No 142
>PRK08898 coproporphyrinogen III oxidase; Provisional
Probab=33.53 E-value=4.4e+02 Score=26.34 Aligned_cols=53 Identities=21% Similarity=0.237 Sum_probs=30.2
Q ss_pred hHHHHHHHHHHHHHHHhCCCCCceEEEEeeCCCchhhhcccCCchHHHHHHHHHHHHHHhc
Q 018479 107 EGYITAMANLIEKELQNFDSPEQVMIFFSAHGVPLAYVEEAGDPYKAEMEECVDLIMEELE 167 (355)
Q Consensus 107 p~yi~a~~~~I~~~l~~~~~~~~~~llfsaHgiP~~~v~~~GDpY~~~~~~ta~~v~e~l~ 167 (355)
..|++++.+-|+....... ...+.-||-.-|.|... =..++.++...|.+.++
T Consensus 52 ~~Y~~~l~~ei~~~~~~~~-~~~i~siy~GGGTPs~L-------~~~~L~~ll~~i~~~~~ 104 (394)
T PRK08898 52 AAYLDALRADLEQALPLVW-GRQVHTVFIGGGTPSLL-------SAAGLDRLLSDVRALLP 104 (394)
T ss_pred HHHHHHHHHHHHHHHHhcc-CCceeEEEECCCCcCCC-------CHHHHHHHHHHHHHhCC
Confidence 5699999988876532221 12344555433333221 15677777777777664
No 143
>cd02072 Glm_B12_BD B12 binding domain of glutamate mutase (Glm). Glutamate mutase catalysis the conversion of (S)-glutamate with (2S,3S)-3-methylaspartate. The rearrangement reaction is initiated by the extraction of a hydrogen from the protein-bound substrate by a 5'-desoxyadenosyl radical, which is generated by the homolytic cleavage of the organometallic bond of the cofactor B12. Glm is a heterotetrameric molecule consisting of two alpha and two epsilon polypeptide chains.
Probab=33.45 E-value=84 Score=26.73 Aligned_cols=55 Identities=27% Similarity=0.233 Sum_probs=26.2
Q ss_pred CCCchhHHHHHHHHHHHHHHhccCC-CceEEEeee--cCCCCHHHHHHHHHHcCCCEE
Q 018479 7 LVLSLAIISCIQAEELRKSLWEKNL-PAKVYVGMR--YWHPFTEEAIEQIKRDGITKL 61 (355)
Q Consensus 7 ggSPL~~~t~~qa~~l~~~L~~~~~-~~~V~~amr--y~~P~i~~~l~~l~~~G~~~I 61 (355)
|.|-|+..+....+.+.+.|++.+. +++|.+|=- -.+...++..++|++.|++++
T Consensus 55 glS~L~t~~~~~~~~~~~~l~~~gl~~v~vivGG~~~i~~~d~~~~~~~L~~~Gv~~v 112 (128)
T cd02072 55 LVSSLYGHGEIDCKGLREKCDEAGLKDILLYVGGNLVVGKQDFEDVEKRFKEMGFDRV 112 (128)
T ss_pred EEeccccCCHHHHHHHHHHHHHCCCCCCeEEEECCCCCChhhhHHHHHHHHHcCCCEE
Confidence 3455555555555555555555443 455555422 122233444455555565544
No 144
>TIGR00674 dapA dihydrodipicolinate synthase. Dihydrodipicolinate synthase is a homotetrameric enzyme of lysine biosynthesis. E. coli has several paralogs closely related to dihydrodipicoline synthase (DapA), as well as the more distant N-acetylneuraminate lyase. In Pyrococcus horikoshii, the bidirectional best hit with E. coli is to an uncharacterized paralog of DapA, not DapA itself, and it is omitted from the seed. The putative members from the Chlamydias (pathogens with a parasitic metabolism) are easily the most divergent members of the multiple alignment.
Probab=33.44 E-value=4.2e+02 Score=25.05 Aligned_cols=94 Identities=17% Similarity=0.242 Sum_probs=53.8
Q ss_pred HHHHHHHHHHHHHHhcccccCCceeEEEEecccCCCCCCCcHHHHHHHH---HhcCCceEEEEcceecccchhhHHHHHH
Q 018479 152 KAEMEECVDLIMEELEKRKITNAYTLAYQSRVGPVEWLKPYTDETIIKL---GQKGVKSLLAVPISFVSEHIETLEEIDV 228 (355)
Q Consensus 152 ~~~~~~ta~~v~e~l~~~~~~~~~~l~fQS~~G~~~Wl~P~~~d~l~~L---~~~G~k~VvVvP~gFvsD~lETl~eid~ 228 (355)
..|-.+..+.+.+..+. +..+-.+ .+ ..+++++++.. .+.|++.|+++||.|..-.-+-+++
T Consensus 50 ~~Er~~~~~~~~~~~~~-----~~~vi~g--v~-----~~s~~~~i~~a~~a~~~Gad~v~v~pP~y~~~~~~~i~~--- 114 (285)
T TIGR00674 50 HEEHKKVIEFVVDLVNG-----RVPVIAG--TG-----SNATEEAISLTKFAEDVGADGFLVVTPYYNKPTQEGLYQ--- 114 (285)
T ss_pred HHHHHHHHHHHHHHhCC-----CCeEEEe--CC-----CccHHHHHHHHHHHHHcCCCEEEEcCCcCCCCCHHHHHH---
Confidence 44555555666665432 1333332 22 46788877753 4569999999998877543344443
Q ss_pred HHHHHHHhcCCceEEE-cCC---CCCCHHHHHHHHH
Q 018479 229 EYKELALKSGIEKWGR-VPA---LGCEATFISDLAD 260 (355)
Q Consensus 229 e~~e~a~~~G~~~~~r-v~~---ln~~p~fi~~La~ 260 (355)
-++++++..+..-+.| .|. .+-++.++..|++
T Consensus 115 ~~~~i~~~~~~pi~lYn~P~~tg~~l~~~~l~~L~~ 150 (285)
T TIGR00674 115 HFKAIAEEVDLPIILYNVPSRTGVSLYPETVKRLAE 150 (285)
T ss_pred HHHHHHhcCCCCEEEEECcHHhcCCCCHHHHHHHHc
Confidence 5677777665543333 231 2456666666553
No 145
>PF08029 HisG_C: HisG, C-terminal domain; InterPro: IPR013115 ATP phosphoribosyltransferase (2.4.2.17 from EC) is the enzyme that catalyzes the first step in the biosynthesis of histidine in bacteria, fungi and plants as shown below. It is a member of the larger phosphoribosyltransferase superfamily of enzymes which catalyse the condensation of 5-phospho-alpha-D-ribose 1-diphosphate with nitrogenous bases in the presence of divalent metal ions []. ATP + 5-phospho-alpha-D-ribose 1-diphosphate = 1-(5-phospho-D-ribosyl)-ATP + diphosphate Histidine biosynthesis is an energetically expensive process and ATP phosphoribosyltransferase activity is subject to control at several levels. Transcriptional regulation is based primarily on nutrient conditions and determines the amount of enzyme present in the cell, while feedback inihibition rapidly modulates activity in response to cellular conditions. The enzyme has been shown to be inhibited by 1-(5-phospho-D-ribosyl)-ATP, histidine, ppGpp (a signal associated with adverse environmental conditions) and ADP and AMP (which reflect the overall energy status of the cell). As this pathway of histidine biosynthesis is present only in prokayrotes, plants and fungi, this enzyme is a promising target for the development of novel antimicrobial compounds and herbicides. This entry represents the C-terminal portion of ATP phosphoribosyltransferase. The enzyme itself exists in equilibrium between an active dimeric form, an inactive hexameric form and higher aggregates [, ]. Interconversion between the various forms is largely reversible and is influenced by the binding of the natural substrates and inhibitors of the enzyme. This domain is not directly involved in catalysis but appears to be responsible for the formation of hexamers induced by the binding of inhibitors to the enzyme, thus regulating activity.; GO: 0000287 magnesium ion binding, 0003879 ATP phosphoribosyltransferase activity, 0000105 histidine biosynthetic process, 0005737 cytoplasm; PDB: 1Q1K_A 1H3D_A 2VD3_B 1NH7_A 1NH8_A.
Probab=33.33 E-value=38 Score=26.03 Aligned_cols=25 Identities=20% Similarity=0.420 Sum_probs=20.7
Q ss_pred CCCCHHHHHHHHHHcCCCEEEEeec
Q 018479 42 WHPFTEEAIEQIKRDGITKLVVLPL 66 (355)
Q Consensus 42 ~~P~i~~~l~~l~~~G~~~IvvlPl 66 (355)
-+-.+.+.+++|++.|++.|+++|+
T Consensus 48 ~~~~~~~~~~~Lk~~GA~~Ilv~pi 72 (75)
T PF08029_consen 48 PEKQVWDLMDKLKAAGASDILVLPI 72 (75)
T ss_dssp ECCCHHHHHHHHHCTT-EEEEEEE-
T ss_pred cHHHHHHHHHHHHHcCCCEEEEEec
Confidence 3566899999999999999999997
No 146
>PRK08898 coproporphyrinogen III oxidase; Provisional
Probab=33.23 E-value=68 Score=32.19 Aligned_cols=56 Identities=13% Similarity=0.090 Sum_probs=30.8
Q ss_pred ccCCCchhHHHHHHHH---HHHHHHhccCCCceEEEeeecCCC-CHHHHHHHHHHcCCCEEEE
Q 018479 5 FVLVLSLAIISCIQAE---ELRKSLWEKNLPAKVYVGMRYWHP-FTEEAIEQIKRDGITKLVV 63 (355)
Q Consensus 5 igggSPL~~~t~~qa~---~l~~~L~~~~~~~~V~~amry~~P-~i~~~l~~l~~~G~~~Ivv 63 (355)
||||+|..--.+++.+ .+.+.+.-.. + ..+.+.-.+- .-.+-++.|++.|+++|-+
T Consensus 79 ~GGGTPs~L~~~~L~~ll~~i~~~~~~~~-~--~eit~E~~p~~~~~e~L~~l~~~Gvnrisi 138 (394)
T PRK08898 79 IGGGTPSLLSAAGLDRLLSDVRALLPLDP-D--AEITLEANPGTFEAEKFAQFRASGVNRLSI 138 (394)
T ss_pred ECCCCcCCCCHHHHHHHHHHHHHhCCCCC-C--CeEEEEECCCCCCHHHHHHHHHcCCCeEEE
Confidence 6888888655444333 3333332111 1 2333332211 2347888888899998876
No 147
>PRK04147 N-acetylneuraminate lyase; Provisional
Probab=33.21 E-value=2.3e+02 Score=27.05 Aligned_cols=52 Identities=15% Similarity=0.077 Sum_probs=32.9
Q ss_pred CceEEEeeecCCCCHHHHHHHH---HHcCCCEEEEeecCccccccchHHHHHHHHHHHH
Q 018479 32 PAKVYVGMRYWHPFTEEAIEQI---KRDGITKLVVLPLYPQFSISTSGSSLRLLESIFR 87 (355)
Q Consensus 32 ~~~V~~amry~~P~i~~~l~~l---~~~G~~~IvvlPlyPqyS~~ttgs~~~~~~e~~~ 87 (355)
.++|..+- +.+++.++++.. .+.|++-++++| |.|...|-....+.+.+..+
T Consensus 73 ~~~viagv--g~~~t~~ai~~a~~a~~~Gad~v~v~~--P~y~~~~~~~l~~~f~~va~ 127 (293)
T PRK04147 73 KVKLIAQV--GSVNTAEAQELAKYATELGYDAISAVT--PFYYPFSFEEICDYYREIID 127 (293)
T ss_pred CCCEEecC--CCCCHHHHHHHHHHHHHcCCCEEEEeC--CcCCCCCHHHHHHHHHHHHH
Confidence 45666654 557788887644 456999888887 55655554444444555544
No 148
>cd02167 NMNAT_NadR Nicotinamide/nicotinate mononucleotide adenylyltransferase of bifunctional NadR-like proteins. NMNAT domain of NadR protein. The NadR protein (NadR) is a bifunctional enzyme possessing both NMN adenylytransferase (NMNAT) and ribosylnicotinamide kinase (RNK) activities. Its function is essential for the growth and survival of H. influenzae and thus may present a new highly specific anti-infectious drug target. The N-terminal domain that hosts the NMNAT activity is closely related to archaeal NMNAT. The bound NAD at the active site of the NMNAT domain reveals several critical interactions between NAD and the protein.The NMNAT domain of hiNadR defines yet another member of the pyridine nucleotide adenylyltransferase
Probab=32.75 E-value=3.3e+02 Score=23.61 Aligned_cols=95 Identities=14% Similarity=0.074 Sum_probs=53.1
Q ss_pred ecCCCCHH--HHHHHHHHcCCCEEEEeecCcccc-----ccchHHHHHHHHHHHHhccccCCceeEEec--CCCCChHHH
Q 018479 40 RYWHPFTE--EAIEQIKRDGITKLVVLPLYPQFS-----ISTSGSSLRLLESIFREDEYLVNMQHTVIP--SWYQREGYI 110 (355)
Q Consensus 40 ry~~P~i~--~~l~~l~~~G~~~IvvlPlyPqyS-----~~ttgs~~~~~~e~~~~~~~~~~~~~~~i~--~~~~~p~yi 110 (355)
+|.+|-.. ..++++.+. +++++++|..-..+ .+|.+.=++.+.++++. .+.+.+..+. ....+|..-
T Consensus 7 ~F~P~H~GHl~li~~a~~~-~d~v~vi~~~~~~~~~~~~~~~~~~R~~mi~~a~~~---~~~~~v~~~~~~d~~~~~~~w 82 (158)
T cd02167 7 KFAPLHTGHVYLIYKALSQ-VDELLIIVGSDDTRDDARTGLPLEKRLRWLREIFPD---QENIVVHTLNEPDIPEYPNGW 82 (158)
T ss_pred ccCCCCHHHHHHHHHHHHH-CCEEEEEECCCCcccccCCCCCHHHHHHHHHHHhcC---CCCEEEEeCCCCCCCCCchhH
Confidence 55555543 556665554 69999999754432 24444444445555432 2444444333 344455567
Q ss_pred HHHHHHHHHHHHhCCCCCceEEEEeeCCC
Q 018479 111 TAMANLIEKELQNFDSPEQVMIFFSAHGV 139 (355)
Q Consensus 111 ~a~~~~I~~~l~~~~~~~~~~llfsaHgi 139 (355)
+.|+..|++.+.+.. ..+..++|+.|..
T Consensus 83 ~~w~~~v~~~v~~~~-~~~~~~vf~~~~~ 110 (158)
T cd02167 83 DIWSNRVKTLIAENT-RCRPDIVFTAEEY 110 (158)
T ss_pred HHHHHHHHHHHhhhc-CCCCCEEEEccCc
Confidence 777888998887431 1133578875443
No 149
>PF08210 APOBEC_N: APOBEC-like N-terminal domain; InterPro: IPR013158 This domain is found at the N terminus of the Apolipoprotein B mRNA editing enzyme. Apobec-1 catalyzes C to U editing of apolipoprotein B (apoB) mRNA in the mammalian intestine. The N-terminal domain of APOBEC-1 like proteins is the catalytic domain, while the C-terminal domain is a pseudocatalyitc domain. More specifically, the catalytic domain is a zinc dependent deaminases domain and is essential for cytidine deamination. APOBEC-3 like members contain two copies of this domain. This family also includes the functionally homologous activation induced deaminase, which is essential for the development of antibody diversity in B lymphocytes. RNA editing by APOBEC-1 requires homodimerisation and this complex interacts with RNA binding proteins to from the editosome [] (and references therein).; GO: 0008270 zinc ion binding, 0016814 hydrolase activity, acting on carbon-nitrogen (but not peptide) bonds, in cyclic amidines; PDB: 3IQS_A 3IR2_A 3V4J_B 2KEM_A 2KBO_A 3V4K_A 3E1U_A 2JYW_A 2RPZ_A.
Probab=32.67 E-value=22 Score=32.19 Aligned_cols=95 Identities=15% Similarity=0.190 Sum_probs=50.4
Q ss_pred CchhH----HHHHHHHHHHHHHhccCCCceEEEe--eecCCCC---HHHHHHHHHHcCCCEEEEeecCccccccchHHHH
Q 018479 9 LSLAI----ISCIQAEELRKSLWEKNLPAKVYVG--MRYWHPF---TEEAIEQIKRDGITKLVVLPLYPQFSISTSGSSL 79 (355)
Q Consensus 9 SPL~~----~t~~qa~~l~~~L~~~~~~~~V~~a--mry~~P~---i~~~l~~l~~~G~~~IvvlPlyPqyS~~ttgs~~ 79 (355)
||=.. -.++.++.|++.+. .++.+.++++ +.+++|. ..++|+.|.+.|++ |=+|- .
T Consensus 83 SPC~~~~~~Ca~~i~~FL~~~~~-~~v~L~I~~arLY~~~~~~~~~~~eGLr~L~~aGv~---v~iM~-------~---- 147 (188)
T PF08210_consen 83 SPCPESDHCCAEKIAEFLKKHLK-PNVSLSIFAARLYYHWEPEPLWNQEGLRRLASAGVQ---VEIMS-------Y---- 147 (188)
T ss_dssp S--CC----HHHHHHHHHCCC---TTEEEEEEESS--STTSTT---HHHHHHHHHHCTEE---EEE-S-------H----
T ss_pred CCCcchhhHHHHHHHHHHHHhCC-CCCeEEEEEEeeeeecCCcchhHHHHHHHHHHcCCE---EEEcC-------H----
Confidence 56666 44444444444332 3566777777 5778888 89999999999865 32342 1
Q ss_pred HHHHHHHHhccccCCceeEEecCCCCChHHHHHHHHHHHHH
Q 018479 80 RLLESIFREDEYLVNMQHTVIPSWYQREGYITAMANLIEKE 120 (355)
Q Consensus 80 ~~~~e~~~~~~~~~~~~~~~i~~~~~~p~yi~a~~~~I~~~ 120 (355)
.++....+.-. ...-+ ..-.+|-..+...+.+..++...
T Consensus 148 ~df~~cw~~FV-~~~~~-~~f~pW~~l~~~~~~~~~~l~~i 186 (188)
T PF08210_consen 148 KDFEYCWDNFV-HNGEN-RPFQPWEKLEENSQRLQRQLQNI 186 (188)
T ss_dssp HHHHHHHHCCE-TTT-S--S----TTCCHHHHHHHHHHHHH
T ss_pred HHHHHHHHhcc-cccCC-CCCCccchhhHHHHHHHHHHHHh
Confidence 24444443211 01000 34568888888888777766543
No 150
>PLN00125 Succinyl-CoA ligase [GDP-forming] subunit alpha
Probab=32.43 E-value=88 Score=30.49 Aligned_cols=52 Identities=8% Similarity=0.057 Sum_probs=36.1
Q ss_pred CCcHHHHHHHHHhcCCceEEEEcceecccchhhHHHHHHHHHHHHHhcCCceEEEcCCC
Q 018479 190 KPYTDETIIKLGQKGVKSLLAVPISFVSEHIETLEEIDVEYKELALKSGIEKWGRVPAL 248 (355)
Q Consensus 190 ~P~~~d~l~~L~~~G~k~VvVvP~gFvsD~lETl~eid~e~~e~a~~~G~~~~~rv~~l 248 (355)
.+.+.++++++.+.|+|.++++.=||---. +..+..+.+++.|+. +.=..|+
T Consensus 79 a~~v~~al~e~~~~Gvk~~vIisaGf~e~g------~~~~~~~~ar~~gir-viGPNc~ 130 (300)
T PLN00125 79 PPFAAAAILEAMEAELDLVVCITEGIPQHD------MVRVKAALNRQSKTR-LIGPNCP 130 (300)
T ss_pred HHHHHHHHHHHHHcCCCEEEEECCCCCccc------HHHHHHHHHhhcCCE-EECCCCc
Confidence 367899999999999999999999994322 222445567777763 4444443
No 151
>PF13579 Glyco_trans_4_4: Glycosyl transferase 4-like domain; PDB: 3C4Q_B 3C4V_A 3C48_B 1Z2T_A.
Probab=32.40 E-value=1.9e+02 Score=23.19 Aligned_cols=24 Identities=8% Similarity=0.130 Sum_probs=12.0
Q ss_pred CCcHHHHHHHHHhcCCceEEEEcce
Q 018479 190 KPYTDETIIKLGQKGVKSLLAVPIS 214 (355)
Q Consensus 190 ~P~~~d~l~~L~~~G~k~VvVvP~g 214 (355)
++++.+.+.+.. -...+|.|+|-|
T Consensus 137 S~~~~~~l~~~g-~~~~ri~vipnG 160 (160)
T PF13579_consen 137 SEAMRRYLRRYG-VPPDRIHVIPNG 160 (160)
T ss_dssp SHHHHHHHHHH----GGGEEE----
T ss_pred CHHHHHHHHHhC-CCCCcEEEeCcC
Confidence 467777777743 234589999865
No 152
>PF13684 Dak1_2: Dihydroxyacetone kinase family
Probab=32.39 E-value=69 Score=31.29 Aligned_cols=45 Identities=24% Similarity=0.376 Sum_probs=29.7
Q ss_pred HHHHHhccCCCceEEEeeecCCCCHHHHHHHHHHcCCCEEEEeecC
Q 018479 22 LRKSLWEKNLPAKVYVGMRYWHPFTEEAIEQIKRDGITKLVVLPLY 67 (355)
Q Consensus 22 l~~~L~~~~~~~~V~~amry~~P~i~~~l~~l~~~G~~~IvvlPly 67 (355)
+.+.+++.|.+. |..+=.=..|+++|-++.+.+-++++|++||--
T Consensus 108 ~~~lf~~~Gv~~-vi~ggqt~nPS~~dl~~Ai~~~~a~~VivLPNn 152 (313)
T PF13684_consen 108 LAELFRSLGVDV-VISGGQTMNPSTEDLLNAIEKVGADEVIVLPNN 152 (313)
T ss_pred HHHHHHhCCCeE-EEeCCCCCCCCHHHHHHHHHhCCCCeEEEEeCC
Confidence 444454444332 333333468888888888888888999888874
No 153
>PRK14556 pyrH uridylate kinase; Provisional
Probab=32.36 E-value=4.2e+02 Score=25.13 Aligned_cols=102 Identities=14% Similarity=-0.007 Sum_probs=55.4
Q ss_pred cCCCCChHHHHHHHHHHHHHHHhCCCCCceEEEEeeCCCchhhhccc---C-CchHH---HHHHH---HHHHHHHhcccc
Q 018479 101 PSWYQREGYITAMANLIEKELQNFDSPEQVMIFFSAHGVPLAYVEEA---G-DPYKA---EMEEC---VDLIMEELEKRK 170 (355)
Q Consensus 101 ~~~~~~p~yi~a~~~~I~~~l~~~~~~~~~~llfsaHgiP~~~v~~~---G-DpY~~---~~~~t---a~~v~e~l~~~~ 170 (355)
..|+-++.+++.+++.|++..+. .-+..+|.- =|=..|-...+ | |.... -+..| +.+++..|...+
T Consensus 31 ~~~~~d~~~~~~~a~~i~~~~~~---g~~i~iVvG-GGni~Rg~~~~~~~~~~r~~~D~~GmlaT~iNal~l~~~l~~~~ 106 (249)
T PRK14556 31 QGFGINVESAQPIINQIKTLTNF---GVELALVVG-GGNILRGGRANFGNKIRRATADSMGMIATMINALALRDMLISEG 106 (249)
T ss_pred CCCCcCHHHHHHHHHHHHHHHhC---CcEEEEEEC-CCHHHhCchhhccCCCchhhhhHHHHHHHHHHHHHHHHHHHHcC
Confidence 45778899999999999887652 124445431 11111111000 1 11111 11111 234555554333
Q ss_pred cCCceeEEEEecccCCCCCCCcHHHHHHHHHhcCCceEEEEc
Q 018479 171 ITNAYTLAYQSRVGPVEWLKPYTDETIIKLGQKGVKSLLAVP 212 (355)
Q Consensus 171 ~~~~~~l~fQS~~G~~~Wl~P~~~d~l~~L~~~G~k~VvVvP 212 (355)
....-||......-.+|+..+.+.+..++| +|+|+.
T Consensus 107 ----~~~~v~sa~~~~~~~e~~~~~~~~~~l~~g--~vvi~~ 142 (249)
T PRK14556 107 ----VDAEVFSAKGVDGLLKVASAHEFNQELAKG--RVLIFA 142 (249)
T ss_pred ----CCeEEeeccccCcCCCCCCHHHHHHHHhCC--CEEEEE
Confidence 456678887655567787777777777777 366644
No 154
>PF13204 DUF4038: Protein of unknown function (DUF4038); PDB: 3KZS_D.
Probab=32.25 E-value=2.4e+02 Score=27.01 Aligned_cols=87 Identities=17% Similarity=0.196 Sum_probs=49.7
Q ss_pred HHHHHHHHHHcCCCEEEEeecC--ccc--------cccchHHHHHHHHHHHHhccccCCceeEEecCC---CCChHHHHH
Q 018479 46 TEEAIEQIKRDGITKLVVLPLY--PQF--------SISTSGSSLRLLESIFREDEYLVNMQHTVIPSW---YQREGYITA 112 (355)
Q Consensus 46 i~~~l~~l~~~G~~~IvvlPly--Pqy--------S~~ttgs~~~~~~e~~~~~~~~~~~~~~~i~~~---~~~p~yi~a 112 (355)
++..|+.+.+.|+.- .+||+. |.- ..++.....+.++-+.+..+.+|++-+.....+ .....+.++
T Consensus 90 ~d~~i~~a~~~Gi~~-~lv~~wg~~~~~~~Wg~~~~~m~~e~~~~Y~~yv~~Ry~~~~NviW~l~gd~~~~~~~~~~w~~ 168 (289)
T PF13204_consen 90 LDRRIEKANELGIEA-ALVPFWGCPYVPGTWGFGPNIMPPENAERYGRYVVARYGAYPNVIWILGGDYFDTEKTRADWDA 168 (289)
T ss_dssp HHHHHHHHHHTT-EE-EEESS-HHHHH-------TTSS-HHHHHHHHHHHHHHHTT-SSEEEEEESSS--TTSSHHHHHH
T ss_pred HHHHHHHHHHCCCeE-EEEEEECCccccccccccccCCCHHHHHHHHHHHHHHHhcCCCCEEEecCccCCCCcCHHHHHH
Confidence 467888889999875 355776 320 233343333333444444455666667777777 667777888
Q ss_pred HHHHHHHHHHhCCCCCceEEEEeeCCCch
Q 018479 113 MANLIEKELQNFDSPEQVMIFFSAHGVPL 141 (355)
Q Consensus 113 ~~~~I~~~l~~~~~~~~~~llfsaHgiP~ 141 (355)
+++.|++.- +. . |.|.|.-+.
T Consensus 169 ~~~~i~~~d-----p~--~-L~T~H~~~~ 189 (289)
T PF13204_consen 169 MARGIKEND-----PY--Q-LITIHPCGR 189 (289)
T ss_dssp HHHHHHHH-------S--S--EEEEE-BT
T ss_pred HHHHHHhhC-----CC--C-cEEEeCCCC
Confidence 777776663 12 2 889998753
No 155
>cd06208 CYPOR_like_FNR These ferredoxin reductases are related to the NADPH cytochrome p450 reductases (CYPOR), but lack the FAD-binding region connecting sub-domain. Ferredoxin-NADP+ reductase (FNR) is an FAD-containing enzyme that catalyzes the reversible electron transfer between NADP(H) and electron carrier proteins, such as ferredoxin and flavodoxin. Isoforms of these flavoproteins (i.e. having a non-covalently bound FAD as a prosthetic group) are present in chloroplasts, mitochondria, and bacteria in which they participate in a wide variety of redox metabolic pathways. The C-terminal domain contains most of the NADP(H) binding residues and the N-terminal domain interacts non-covalently with the isoalloxazine rings of the flavin molecule which lies largely in a large gap between the two domains. Ferredoxin-NADP+ reductase first accepts one electron from reduced ferredoxin to form a flavin semiquinone intermediate. The enzyme then accepts a second electron to form FADH2, which then
Probab=32.20 E-value=3.3e+02 Score=25.75 Aligned_cols=20 Identities=5% Similarity=-0.034 Sum_probs=13.1
Q ss_pred ceEEEE-cceecccchhhHHH
Q 018479 206 KSLLAV-PISFVSEHIETLEE 225 (355)
Q Consensus 206 k~VvVv-P~gFvsD~lETl~e 225 (355)
..|.+| |++|+.+..+.|.+
T Consensus 240 ~~vYiCGp~~m~~~v~~~L~~ 260 (286)
T cd06208 240 THVYICGLKGMEPGVDDALTS 260 (286)
T ss_pred cEEEEeCCchHHHHHHHHHHH
Confidence 356666 66777777666655
No 156
>PRK03620 5-dehydro-4-deoxyglucarate dehydratase; Provisional
Probab=32.13 E-value=2.4e+02 Score=27.10 Aligned_cols=53 Identities=23% Similarity=0.289 Sum_probs=33.4
Q ss_pred CCCceEEEeeecCCCCHHHHHHHHH---HcCCCEEEEeecCccccccchHHHHHHHHHHHH
Q 018479 30 NLPAKVYVGMRYWHPFTEEAIEQIK---RDGITKLVVLPLYPQFSISTSGSSLRLLESIFR 87 (355)
Q Consensus 30 ~~~~~V~~amry~~P~i~~~l~~l~---~~G~~~IvvlPlyPqyS~~ttgs~~~~~~e~~~ 87 (355)
+..++|..+- +. ++.++++..+ +.|++-++++| |.|...|-....+.+.+..+
T Consensus 74 ~~~~pvi~gv--~~-~t~~~i~~~~~a~~~Gadav~~~p--P~y~~~~~~~i~~~f~~va~ 129 (303)
T PRK03620 74 AGRVPVIAGA--GG-GTAQAIEYAQAAERAGADGILLLP--PYLTEAPQEGLAAHVEAVCK 129 (303)
T ss_pred CCCCcEEEec--CC-CHHHHHHHHHHHHHhCCCEEEECC--CCCCCCCHHHHHHHHHHHHH
Confidence 3457777777 34 7888887554 46999998877 44555554444444444443
No 157
>cd07939 DRE_TIM_NifV Streptomyces rubellomurinus FrbC and related proteins, catalytic TIM barrel domain. FrbC (NifV) of Streptomyces rubellomurinus catalyzes the condensation of acetyl-CoA and alpha-ketoglutarate to form homocitrate and CoA, a reaction similar to one catalyzed by homocitrate synthase. The gene encoding FrbC is one of several genes required for the biosynthesis of FR900098, a potent antimalarial antibiotic. This protein is also required for assembly of the nitrogenase MoFe complex but its exact role is unknown. This family also includes the NifV proteins of Heliobacterium chlorum and Gluconacetobacter diazotrophicus, which appear to be orthologous to FrbC. This family belongs to the DRE-TIM metallolyase superfamily. DRE-TIM metallolyases include 2-isopropylmalate synthase (IPMS), alpha-isopropylmalate synthase (LeuA), 3-hydroxy-3-methylglutaryl-CoA lyase, homocitrate synthase, citramalate synthase, 4-hydroxy-2-oxovalerate aldolase, re-citrate synthase, transcarbox
Probab=31.85 E-value=4.3e+02 Score=24.65 Aligned_cols=146 Identities=12% Similarity=0.131 Sum_probs=74.2
Q ss_pred HHHHHHHHcCCCEEEE-eecCcccccc----chHHHHHHHHHHHHhcccc-CCceeEEecCCCCChHHHHHHHHHHHHHH
Q 018479 48 EAIEQIKRDGITKLVV-LPLYPQFSIS----TSGSSLRLLESIFREDEYL-VNMQHTVIPSWYQREGYITAMANLIEKEL 121 (355)
Q Consensus 48 ~~l~~l~~~G~~~Ivv-lPlyPqyS~~----ttgs~~~~~~e~~~~~~~~-~~~~~~~i~~~~~~p~yi~a~~~~I~~~l 121 (355)
+.++...+.|++.|-+ +|..++++.. |...+.+.+.+..+..+.. ..+.+.........+.|+..+++.+.++-
T Consensus 73 ~~v~~a~~~g~~~i~i~~~~s~~~~~~~~~~~~~~~~~~~~~~i~~a~~~G~~v~~~~~~~~~~~~~~~~~~~~~~~~~G 152 (259)
T cd07939 73 EDIEAALRCGVTAVHISIPVSDIHLAHKLGKDRAWVLDQLRRLVGRAKDRGLFVSVGAEDASRADPDFLIEFAEVAQEAG 152 (259)
T ss_pred HHHHHHHhCCcCEEEEEEecCHHHHHHHhCCCHHHHHHHHHHHHHHHHHCCCeEEEeeccCCCCCHHHHHHHHHHHHHCC
Confidence 3455556667776554 3444432221 1112223333333222211 12344444455566777777766654431
Q ss_pred HhCCCCCceEEEEeeCCCchhhhcccCCchHHHHHHHHHHHHHHhcccccCCceeEEEEecccCCCCCCCcHHHHHHHHH
Q 018479 122 QNFDSPEQVMIFFSAHGVPLAYVEEAGDPYKAEMEECVDLIMEELEKRKITNAYTLAYQSRVGPVEWLKPYTDETIIKLG 201 (355)
Q Consensus 122 ~~~~~~~~~~llfsaHgiP~~~v~~~GDpY~~~~~~ta~~v~e~l~~~~~~~~~~l~fQS~~G~~~Wl~P~~~d~l~~L~ 201 (355)
.+ .+-+ .+.-|--++.++.+..+.+++.++. .+.|-.+-. ++=.+...+..+
T Consensus 153 -----~~--~i~l---------~DT~G~~~P~~v~~lv~~l~~~~~~-------~l~~H~Hn~----~Gla~An~laAi- 204 (259)
T cd07939 153 -----AD--RLRF---------ADTVGILDPFTTYELIRRLRAATDL-------PLEFHAHND----LGLATANTLAAV- 204 (259)
T ss_pred -----CC--EEEe---------CCCCCCCCHHHHHHHHHHHHHhcCC-------eEEEEecCC----CChHHHHHHHHH-
Confidence 12 2322 1134666789999999999987642 244443322 234556666665
Q ss_pred hcCCceEEEE--cceecccchh
Q 018479 202 QKGVKSLLAV--PISFVSEHIE 221 (355)
Q Consensus 202 ~~G~k~VvVv--P~gFvsD~lE 221 (355)
+.|++.|-.- .+|=-+.|.-
T Consensus 205 ~aG~~~vd~s~~G~G~~aGN~~ 226 (259)
T cd07939 205 RAGATHVSVTVNGLGERAGNAA 226 (259)
T ss_pred HhCCCEEEEecccccccccCcC
Confidence 5698876654 4554444544
No 158
>TIGR00762 DegV EDD domain protein, DegV family. This family of proteins is related to DegV of Bacillus subtilis and includes paralogous sets in several species (B. subtilis, Deinococcus radiodurans, Mycoplasma pneumoniae) that are closer in percent identity to each than to most homologs from other species. This suggests both recent paralogy and diversity of function. DegV itself is encoded immediately downstream of DegU, a transcriptional regulator of degradation, but is itself uncharacterized. Crystallography suggested a lipid-binding site, while comparison of the crystal structure to dihydroxyacetone kinase and to a mannose transporter EIIA domain suggests a conserved domain, EDD, with phosphotransferase activity.
Probab=31.28 E-value=2.1e+02 Score=27.13 Aligned_cols=62 Identities=21% Similarity=0.193 Sum_probs=37.7
Q ss_pred ecCCCCHHH---HHHHHHHcCCCEEEEeecCccccccchHHHHHHHHHHHHhccccCCceeEEecCCCCChHHH
Q 018479 40 RYWHPFTEE---AIEQIKRDGITKLVVLPLYPQFSISTSGSSLRLLESIFREDEYLVNMQHTVIPSWYQREGYI 110 (355)
Q Consensus 40 ry~~P~i~~---~l~~l~~~G~~~IvvlPlyPqyS~~ttgs~~~~~~e~~~~~~~~~~~~~~~i~~~~~~p~yi 110 (355)
+=+.|+..+ +++++.++| ++|+++++. ..-+|++.. +..+. ..+++.+++++++.....+.-
T Consensus 58 ~TS~ps~~~~~~~~~~l~~~~-~~vi~i~iS----s~lSgty~~-a~~aa---~~~~~~~i~ViDS~~~s~~~g 122 (275)
T TIGR00762 58 KTSQPSPGEFLELYEKLLEEG-DEVLSIHLS----SGLSGTYQS-ARQAA---EMVDEAKVTVIDSKSASMGLG 122 (275)
T ss_pred CcCCCCHHHHHHHHHHHHhCC-CeEEEEEcC----CchhHHHHH-HHHHH---hhCCCCCEEEECChHHHHHHH
Confidence 346788774 556666788 899999994 444555533 11111 123345688998876655543
No 159
>KOG2040 consensus Glycine dehydrogenase (decarboxylating) [Amino acid transport and metabolism]
Probab=31.27 E-value=5.7e+02 Score=28.15 Aligned_cols=96 Identities=19% Similarity=0.262 Sum_probs=62.6
Q ss_pred eEEecCCCCChHHHHHHHHHHHHHHHhCCCC-CceEEE-EeeCCC-------------chhhhcccCCchHHHHHHHHHH
Q 018479 97 HTVIPSWYQREGYITAMANLIEKELQNFDSP-EQVMIF-FSAHGV-------------PLAYVEEAGDPYKAEMEECVDL 161 (355)
Q Consensus 97 ~~~i~~~~~~p~yi~a~~~~I~~~l~~~~~~-~~~~ll-fsaHgi-------------P~~~v~~~GDpY~~~~~~ta~~ 161 (355)
+.+-+.=+.+-.|.-..+ |+.++...++. ..+.|| .||||+ |+... ..|.--..++++-++.
T Consensus 600 ~s~QPNsGA~GEYaGL~~--IRaY~~~kge~hRnvClIPvSAHGTNPASA~MagmkvvpV~~~-~~G~id~~dLk~kaek 676 (1001)
T KOG2040|consen 600 FSLQPNSGAQGEYAGLRV--IRAYLESKGEGHRNVCLIPVSAHGTNPASAAMAGMKVVPVGCD-ANGNIDMVDLKAKAEK 676 (1001)
T ss_pred eeecCCCCcccchhhHHH--HHHHHHhccCCcceeEEEeecccCCChhhHHhcCCEEEEeecc-CCCCccHHHHHHHHHH
Confidence 444455555566665444 67777654432 234444 899995 33322 3454456778888877
Q ss_pred HHHHhcccccCCceeEEEEecccCCCCCCCcHHHHHHHHHhcC
Q 018479 162 IMEELEKRKITNAYTLAYQSRVGPVEWLKPYTDETIIKLGQKG 204 (355)
Q Consensus 162 v~e~l~~~~~~~~~~l~fQS~~G~~~Wl~P~~~d~l~~L~~~G 204 (355)
=++.|. .+.++|-|-.|- .+|++.|++.-..+.|
T Consensus 677 h~~~La------a~MvTYPST~Gv---fE~~i~d~cd~iHehG 710 (1001)
T KOG2040|consen 677 HKDNLA------ALMVTYPSTHGV---FEEGIDDICDIIHEHG 710 (1001)
T ss_pred hhhhhh------eeEEeccccccc---ccccHHHHHHHHHhcC
Confidence 777764 278999998774 3899999999998876
No 160
>PRK13505 formate--tetrahydrofolate ligase; Provisional
Probab=30.91 E-value=6.8e+02 Score=26.69 Aligned_cols=135 Identities=13% Similarity=0.278 Sum_probs=66.2
Q ss_pred HHHHHHHHHHcCCCEEEEeecCccccccchHHHHHHHHHHHHhccccCCceeEEecCCCCChHHHHHHHHHHHHHHHhCC
Q 018479 46 TEEAIEQIKRDGITKLVVLPLYPQFSISTSGSSLRLLESIFREDEYLVNMQHTVIPSWYQREGYITAMANLIEKELQNFD 125 (355)
Q Consensus 46 i~~~l~~l~~~G~~~IvvlPlyPqyS~~ttgs~~~~~~e~~~~~~~~~~~~~~~i~~~~~~p~yi~a~~~~I~~~l~~~~ 125 (355)
+...++-+++-|+.-+|+|=-|+. .+..-.+.+++..++ -++++..-..|.+--.=-..+++.|.++.++-
T Consensus 361 L~RHIenvr~FGvPvVVAINKFd~----DTe~Ei~~I~~~c~e----~Gv~va~~~~~~~Gg~Gai~LA~aVveA~~~~- 431 (557)
T PRK13505 361 LERHIENIRKFGVPVVVAINKFVT----DTDAEIAALKELCEE----LGVEVALSEVWAKGGEGGVELAEKVVELIEEG- 431 (557)
T ss_pred HHHHHHHHHHcCCCEEEEEeCCCC----CCHHHHHHHHHHHHH----cCCCEEEecccccCCcchHHHHHHHHHHHhcC-
Confidence 444555555667777777776654 222223333333322 12344445556554443444455555554421
Q ss_pred CCCceEEEEeeCCCchhhhcccCCchHHHHHHHHHHHHHHhcccccCCceeEEEEecccCCCCCCCcHHHHHHHHHhcCC
Q 018479 126 SPEQVMIFFSAHGVPLAYVEEAGDPYKAEMEECVDLIMEELEKRKITNAYTLAYQSRVGPVEWLKPYTDETIIKLGQKGV 205 (355)
Q Consensus 126 ~~~~~~llfsaHgiP~~~v~~~GDpY~~~~~~ta~~v~e~l~~~~~~~~~~l~fQS~~G~~~Wl~P~~~d~l~~L~~~G~ 205 (355)
+.+.+++- ...++....++++++.|- |.+ .+.| +|...+.|+++.+.|+
T Consensus 432 -~s~f~~lY-----------~~d~sl~eKIe~IAkkIY---GA~------~V~~----------s~~A~kqL~~~e~~Gf 480 (557)
T PRK13505 432 -ESNFKPLY-----------DDEDSLEEKIEKIATKIY---GAK------GVEF----------SPKAKKQLKQIEKNGW 480 (557)
T ss_pred -CCCCceec-----------CCCCcHHHHHHHHHHHcc---CCC------CeeE----------CHHHHHHHHHHHHcCC
Confidence 11222221 122344444444444322 111 2344 4777778888888888
Q ss_pred ceEEEE----cceecccch
Q 018479 206 KSLLAV----PISFVSEHI 220 (355)
Q Consensus 206 k~VvVv----P~gFvsD~l 220 (355)
.+.=|| |++|..|--
T Consensus 481 ~~lPVCmAKTqyS~s~d~~ 499 (557)
T PRK13505 481 DKLPVCMAKTQYSFSDDPK 499 (557)
T ss_pred CCCCeEEEccCCCcCCChh
Confidence 776665 566666543
No 161
>cd00408 DHDPS-like Dihydrodipicolinate synthase family. A member of the class I aldolases, which use an active-site lysine which stablilzes a reaction intermediate via Schiff base formation, and have TIM beta/alpha barrel fold. The dihydrodipicolinate synthase family comprises several pyruvate-dependent class I aldolases that use the same catalytic step to catalyze different reactions in different pathways and includes such proteins as N-acetylneuraminate lyase, MosA protein, 5-keto-4-deoxy-glucarate dehydratase, trans-o-hydroxybenzylidenepyruvate hydratase-aldolase, trans-2'-carboxybenzalpyruvate hydratase-aldolase, and 2-keto-3-deoxy- gluconate aldolase. The family is also referred to as the N-acetylneuraminate lyase (NAL) family.
Probab=30.85 E-value=2.9e+02 Score=25.90 Aligned_cols=52 Identities=21% Similarity=0.331 Sum_probs=32.7
Q ss_pred CceEEEeeecCCCCHHHHHHHH---HHcCCCEEEEeecCccccccchHHHHHHHHHHHH
Q 018479 32 PAKVYVGMRYWHPFTEEAIEQI---KRDGITKLVVLPLYPQFSISTSGSSLRLLESIFR 87 (355)
Q Consensus 32 ~~~V~~amry~~P~i~~~l~~l---~~~G~~~IvvlPlyPqyS~~ttgs~~~~~~e~~~ 87 (355)
+++|..+- +.+++.++++.. .+.|++-++++| |.|...+-....+.+.+..+
T Consensus 66 ~~~vi~gv--~~~~~~~~i~~a~~a~~~Gad~v~v~p--P~y~~~~~~~~~~~~~~ia~ 120 (281)
T cd00408 66 RVPVIAGV--GANSTREAIELARHAEEAGADGVLVVP--PYYNKPSQEGIVAHFKAVAD 120 (281)
T ss_pred CCeEEEec--CCccHHHHHHHHHHHHHcCCCEEEECC--CcCCCCCHHHHHHHHHHHHh
Confidence 56666655 566788877744 456999888876 44555555455554555443
No 162
>PF05378 Hydant_A_N: Hydantoinase/oxoprolinase N-terminal region; InterPro: IPR008040 This domain is found at the N terminus of the hydantoinase/oxoprolinase IPR002821 from INTERPRO family.
Probab=30.82 E-value=89 Score=27.77 Aligned_cols=42 Identities=21% Similarity=0.314 Sum_probs=30.4
Q ss_pred CcHHHHHHHHHhcCCceEEEEcc-eecccchhhHHHHHHHHHHHHHhcC
Q 018479 191 PYTDETIIKLGQKGVKSLLAVPI-SFVSEHIETLEEIDVEYKELALKSG 238 (355)
Q Consensus 191 P~~~d~l~~L~~~G~k~VvVvP~-gFvsD~lETl~eid~e~~e~a~~~G 238 (355)
..++..++++.++|++.|+|+-. ++.....|. ++++++++.|
T Consensus 134 ~~v~~~~~~l~~~gv~avAV~~~fS~~np~hE~------~v~eii~e~g 176 (176)
T PF05378_consen 134 DEVREALRELKDKGVEAVAVSLLFSYRNPEHEQ------RVAEIIREEG 176 (176)
T ss_pred HHHHHHHHHHHhCCCCEEEEECccCCCCHHHHH------HHHHHHHhcC
Confidence 35677788888889999888864 666666554 6677777665
No 163
>TIGR03822 AblA_like_2 lysine-2,3-aminomutase-related protein. Members of this protein form a distinctive clade, homologous to lysine-2,3-aminomutase (of Bacillus, Clostridium, and methanogenic archaea) and likely similar in function. Members of this family are found in Rhodopseudomonas, Caulobacter crescentus, Bradyrhizobium, etc.
Probab=30.78 E-value=5.1e+02 Score=25.18 Aligned_cols=107 Identities=18% Similarity=0.239 Sum_probs=59.6
Q ss_pred cCCchH---HHHHHHHHHHHHHhcccccCCceeEEEEecccCCCCCCCcHHHHHHHHHhcCCceEEEEcceecccchhhH
Q 018479 147 AGDPYK---AEMEECVDLIMEELEKRKITNAYTLAYQSRVGPVEWLKPYTDETIIKLGQKGVKSLLAVPISFVSEHIETL 223 (355)
Q Consensus 147 ~GDpY~---~~~~~ta~~v~e~l~~~~~~~~~~l~fQS~~G~~~Wl~P~~~d~l~~L~~~G~k~VvVvP~gFvsD~lETl 223 (355)
.|||.. ..+.+..+.+.+ .+. -..+.+-|+.. .-|-.=-+++.++.|.+.| ..+. +-+-+ .|.+-+
T Consensus 144 GGDPl~~~~~~L~~ll~~l~~-i~~-----v~~iri~Tr~~-v~~p~rit~ell~~L~~~g-~~v~-i~l~~--~h~~el 212 (321)
T TIGR03822 144 GGDPLVLSPRRLGDIMARLAA-IDH-----VKIVRFHTRVP-VADPARVTPALIAALKTSG-KTVY-VALHA--NHAREL 212 (321)
T ss_pred CCCcccCCHHHHHHHHHHHHh-CCC-----ccEEEEeCCCc-ccChhhcCHHHHHHHHHcC-CcEE-EEecC--CChhhc
Confidence 589963 567777777665 221 12355656631 1111112567788888888 3443 33222 222323
Q ss_pred HHHHHHHHHHHHhcCCce---EEEcCCCCCCHHHHHHHHHHHHH
Q 018479 224 EEIDVEYKELALKSGIEK---WGRVPALGCEATFISDLADAVIE 264 (355)
Q Consensus 224 ~eid~e~~e~a~~~G~~~---~~rv~~ln~~p~fi~~La~~V~e 264 (355)
.+--.++-+.+.++|+.- +....-+|++.+-+..|.+.+.+
T Consensus 213 ~~~~~~ai~~L~~~Gi~v~~q~vLl~gvNd~~~~l~~l~~~l~~ 256 (321)
T TIGR03822 213 TAEARAACARLIDAGIPMVSQSVLLRGVNDDPETLAALMRAFVE 256 (321)
T ss_pred CHHHHHHHHHHHHcCCEEEEEeeEeCCCCCCHHHHHHHHHHHHh
Confidence 343444556667888863 34555678998877777766654
No 164
>COG3545 Predicted esterase of the alpha/beta hydrolase fold [General function prediction only]
Probab=30.66 E-value=1.6e+02 Score=26.65 Aligned_cols=66 Identities=20% Similarity=0.209 Sum_probs=39.8
Q ss_pred CEEEEeecCccccccchHHHHHHHHHHHHhccccCCceeEEecCCCCChHHHHHHHHHHHHHHHhCCCCCceEEEEeeCC
Q 018479 59 TKLVVLPLYPQFSISTSGSSLRLLESIFREDEYLVNMQHTVIPSWYQREGYITAMANLIEKELQNFDSPEQVMIFFSAHG 138 (355)
Q Consensus 59 ~~IvvlPlyPqyS~~ttgs~~~~~~e~~~~~~~~~~~~~~~i~~~~~~p~yi~a~~~~I~~~l~~~~~~~~~~llfsaHg 138 (355)
.+++++|=| -.++.+|....+++.+. ..+ ++=.+-++.|.+-+.+ +++.+++...+. -++|+|||
T Consensus 3 ~~~lIVpG~---~~Sg~~HWq~~we~~l~------~a~-rveq~~w~~P~~~dWi-~~l~~~v~a~~~----~~vlVAHS 67 (181)
T COG3545 3 TDVLIVPGY---GGSGPNHWQSRWESALP------NAR-RVEQDDWEAPVLDDWI-ARLEKEVNAAEG----PVVLVAHS 67 (181)
T ss_pred ceEEEecCC---CCCChhHHHHHHHhhCc------cch-hcccCCCCCCCHHHHH-HHHHHHHhccCC----CeEEEEec
Confidence 356677765 45667888877766542 211 1223566778776644 455666554421 18899999
Q ss_pred C
Q 018479 139 V 139 (355)
Q Consensus 139 i 139 (355)
+
T Consensus 68 L 68 (181)
T COG3545 68 L 68 (181)
T ss_pred c
Confidence 9
No 165
>PF04914 DltD_C: DltD C-terminal region; InterPro: IPR006998 The dlt operon (dltA to dltD) of Lactobacillus rhamnosus 7469 encodes four proteins responsible for the esterification of lipoteichoic acid (LTA) by D-alanine. These esters play an important role in controlling the net anionic charge of the poly (GroP) moiety of LTA. DltA and DltC encode the D-alanine-D-alanyl carrier protein ligase (Dcl) and D-alanyl carrier protein (Dcp), respectively. Whereas the functions of DltA and DltC are defined, the functions of DltB and DltD are unknown. In vitro assays showed that DltD bound Dcp for ligation with D-alanine by Dcl in the presence of ATP. In contrast, the homologue of Dcp, the Escherichia coli acyl carrier protein (ACP), involved in fatty acid biosynthesis, was not bound to DltD and thus was not ligated with D-alanine. DltD also catalyzed the hydrolysis of the mischarged D-alanyl-ACP. The hydrophobic N-terminal sequence of DltD was required for anchoring the protein in the membrane. It is hypothesized that this membrane-associated DltD facilitates the binding of Dcp and Dcl for ligation of Dcp with D-alanine and that the resulting D-alanyl-Dcp is translocated to the primary site of D-alanylation []. These sequences contain the C-terminal region of DltD.; PDB: 3BMA_C.
Probab=30.58 E-value=1.3e+02 Score=25.69 Aligned_cols=49 Identities=12% Similarity=0.012 Sum_probs=33.0
Q ss_pred cHHHHHHHHHhcCCceEEEEcc--eeccc----chhhHHHHHHHHHHHHHhcCCc
Q 018479 192 YTDETIIKLGQKGVKSLLAVPI--SFVSE----HIETLEEIDVEYKELALKSGIE 240 (355)
Q Consensus 192 ~~~d~l~~L~~~G~k~VvVvP~--gFvsD----~lETl~eid~e~~e~a~~~G~~ 240 (355)
+++-.|..+++.|++-++|+|| |-..| ..|...+....+++.+.+.|..
T Consensus 37 Dl~l~L~~~k~~g~~~lfVi~PvNg~wydytG~~~~~r~~~y~kI~~~~~~~gf~ 91 (130)
T PF04914_consen 37 DLQLLLDVCKELGIDVLFVIQPVNGKWYDYTGLSKEMRQEYYKKIKYQLKSQGFN 91 (130)
T ss_dssp HHHHHHHHHHHTT-EEEEEE----HHHHHHTT--HHHHHHHHHHHHHHHHTTT--
T ss_pred HHHHHHHHHHHcCCceEEEecCCcHHHHHHhCCCHHHHHHHHHHHHHHHHHCCCE
Confidence 4555788899999999888876 44444 5566666667888899999974
No 166
>PF08029 HisG_C: HisG, C-terminal domain; InterPro: IPR013115 ATP phosphoribosyltransferase (2.4.2.17 from EC) is the enzyme that catalyzes the first step in the biosynthesis of histidine in bacteria, fungi and plants as shown below. It is a member of the larger phosphoribosyltransferase superfamily of enzymes which catalyse the condensation of 5-phospho-alpha-D-ribose 1-diphosphate with nitrogenous bases in the presence of divalent metal ions []. ATP + 5-phospho-alpha-D-ribose 1-diphosphate = 1-(5-phospho-D-ribosyl)-ATP + diphosphate Histidine biosynthesis is an energetically expensive process and ATP phosphoribosyltransferase activity is subject to control at several levels. Transcriptional regulation is based primarily on nutrient conditions and determines the amount of enzyme present in the cell, while feedback inihibition rapidly modulates activity in response to cellular conditions. The enzyme has been shown to be inhibited by 1-(5-phospho-D-ribosyl)-ATP, histidine, ppGpp (a signal associated with adverse environmental conditions) and ADP and AMP (which reflect the overall energy status of the cell). As this pathway of histidine biosynthesis is present only in prokayrotes, plants and fungi, this enzyme is a promising target for the development of novel antimicrobial compounds and herbicides. This entry represents the C-terminal portion of ATP phosphoribosyltransferase. The enzyme itself exists in equilibrium between an active dimeric form, an inactive hexameric form and higher aggregates [, ]. Interconversion between the various forms is largely reversible and is influenced by the binding of the natural substrates and inhibitors of the enzyme. This domain is not directly involved in catalysis but appears to be responsible for the formation of hexamers induced by the binding of inhibitors to the enzyme, thus regulating activity.; GO: 0000287 magnesium ion binding, 0003879 ATP phosphoribosyltransferase activity, 0000105 histidine biosynthetic process, 0005737 cytoplasm; PDB: 1Q1K_A 1H3D_A 2VD3_B 1NH7_A 1NH8_A.
Probab=30.55 E-value=52 Score=25.28 Aligned_cols=25 Identities=24% Similarity=0.363 Sum_probs=20.9
Q ss_pred CCcHHHHHHHHHhcCCceEEEEcce
Q 018479 190 KPYTDETIIKLGQKGVKSLLAVPIS 214 (355)
Q Consensus 190 ~P~~~d~l~~L~~~G~k~VvVvP~g 214 (355)
+-.+-+.+.+|.+.|.+.|+|+|+-
T Consensus 49 ~~~~~~~~~~Lk~~GA~~Ilv~pi~ 73 (75)
T PF08029_consen 49 EKQVWDLMDKLKAAGASDILVLPIE 73 (75)
T ss_dssp CCCHHHHHHHHHCTT-EEEEEEE-S
T ss_pred HHHHHHHHHHHHHcCCCEEEEEecc
Confidence 5788999999999999999999974
No 167
>PRK08207 coproporphyrinogen III oxidase; Provisional
Probab=30.35 E-value=1e+02 Score=32.08 Aligned_cols=59 Identities=15% Similarity=0.107 Sum_probs=0.0
Q ss_pred ccCCCchhHHHHHHHHHHHHHHhcc-CCCceEEEeeecCCCC--HHHHHHHHHHcCCCEEEE
Q 018479 5 FVLVLSLAIISCIQAEELRKSLWEK-NLPAKVYVGMRYWHPF--TEEAIEQIKRDGITKLVV 63 (355)
Q Consensus 5 igggSPL~~~t~~qa~~l~~~L~~~-~~~~~V~~amry~~P~--i~~~l~~l~~~G~~~Ivv 63 (355)
||||+|..--.+++.+.+......- +......+.+..+.|. -++.++.|++.|+++|-+
T Consensus 224 fGGGTPt~L~~~~L~~Ll~~i~~~f~~~~~~~EiTvE~grPd~it~e~L~~Lk~~Gv~RISI 285 (488)
T PRK08207 224 FGGGTPTSLTAEELERLLEEIYENFPDVKNVKEFTVEAGRPDTITEEKLEVLKKYGVDRISI 285 (488)
T ss_pred EeCCCccCCCHHHHHHHHHHHHHhccccCCceEEEEEcCCCCCCCHHHHHHHHhcCCCeEEE
No 168
>PRK12360 4-hydroxy-3-methylbut-2-enyl diphosphate reductase; Provisional
Probab=30.00 E-value=1.1e+02 Score=29.60 Aligned_cols=67 Identities=12% Similarity=0.312 Sum_probs=39.5
Q ss_pred eEEecCCCCChHHHHHHHHH-HH----HHHHhCCCCCceEEEEeeCCCchhhhc---ccC-------CchHHHHHHHHHH
Q 018479 97 HTVIPSWYQREGYITAMANL-IE----KELQNFDSPEQVMIFFSAHGVPLAYVE---EAG-------DPYKAEMEECVDL 161 (355)
Q Consensus 97 ~~~i~~~~~~p~yi~a~~~~-I~----~~l~~~~~~~~~~llfsaHgiP~~~v~---~~G-------DpY~~~~~~ta~~ 161 (355)
+...-+.=-+|..++.+.++ |. +.+.+. ++...|+|+|||+|....+ .+| .||...++..++.
T Consensus 34 vy~lG~iVHN~~Vv~~L~~~Gv~~v~~~~~~~v--~~~~~ViirAHGv~~~~~~~~~~~g~~viDaTCP~V~k~~~~v~~ 111 (281)
T PRK12360 34 IYTLGPLIHNNQVVSDLEEKGVKTIEESEIDSL--KEGDVVIIRSHGVSKKVYKDLKDKGLEIIDATCPFVKKIQNIVEE 111 (281)
T ss_pred eEEecCCcCCHHHHHHHHHCcCEEECcCchhhC--CCCCEEEEeCCCCCHHHHHHHHHCCCeEEeCCCccchHHHHHHHH
Confidence 44445555566666655544 10 112222 2344799999999977542 234 4788888887777
Q ss_pred HHHH
Q 018479 162 IMEE 165 (355)
Q Consensus 162 v~e~ 165 (355)
..++
T Consensus 112 ~~~~ 115 (281)
T PRK12360 112 YYNK 115 (281)
T ss_pred HHhC
Confidence 6664
No 169
>PTZ00397 macrophage migration inhibition factor-like protein; Provisional
Probab=29.90 E-value=2e+02 Score=23.37 Aligned_cols=34 Identities=6% Similarity=0.301 Sum_probs=22.2
Q ss_pred HHHHHHHHHHHHHHhcccccCCceeEEEEecccCCCC
Q 018479 152 KAEMEECVDLIMEELEKRKITNAYTLAYQSRVGPVEW 188 (355)
Q Consensus 152 ~~~~~~ta~~v~e~l~~~~~~~~~~l~fQS~~G~~~W 188 (355)
..-..++++.+.+.||.+. +++.+.|+. ..+..|
T Consensus 75 ~~l~~~i~~~l~~~lgi~~--~rv~I~f~~-~~~~~w 108 (116)
T PTZ00397 75 SSIAAAITKILASHLKVKS--ERVYIEFKD-CSAQNW 108 (116)
T ss_pred HHHHHHHHHHHHHHhCcCc--ccEEEEEEE-CChhhe
Confidence 4456677788888888763 458888864 333334
No 170
>PRK09057 coproporphyrinogen III oxidase; Provisional
Probab=29.88 E-value=85 Score=31.30 Aligned_cols=59 Identities=8% Similarity=-0.018 Sum_probs=0.0
Q ss_pred ccCCCchhHHHHHHHHHHHHHHhccCCCceEEEeeecCCCCHH-HHHHHHHHcCCCEEEE
Q 018479 5 FVLVLSLAIISCIQAEELRKSLWEKNLPAKVYVGMRYWHPFTE-EAIEQIKRDGITKLVV 63 (355)
Q Consensus 5 igggSPL~~~t~~qa~~l~~~L~~~~~~~~V~~amry~~P~i~-~~l~~l~~~G~~~Ivv 63 (355)
||||+|..--.+++.+.+...-..-...-.+.+.+.-.+=++. +-++.|++.|+++|-+
T Consensus 61 ~GGGTPs~l~~~~L~~ll~~i~~~f~~~~~~eit~E~~P~~i~~e~L~~l~~~Gvnrisl 120 (380)
T PRK09057 61 FGGGTPSLMQPETVAALLDAIARLWPVADDIEITLEANPTSVEAGRFRGYRAAGVNRVSL 120 (380)
T ss_pred eCCCccccCCHHHHHHHHHHHHHhCCCCCCccEEEEECcCcCCHHHHHHHHHcCCCEEEE
No 171
>PRK03620 5-dehydro-4-deoxyglucarate dehydratase; Provisional
Probab=29.84 E-value=2.4e+02 Score=27.15 Aligned_cols=65 Identities=15% Similarity=0.101 Sum_probs=40.6
Q ss_pred cHHHHHHH---HHhcCCceEEEEcceecccchhhHHHHHHHHHHHHHhcCCceEEEc-CCCCCCHHHHHHHH
Q 018479 192 YTDETIIK---LGQKGVKSLLAVPISFVSEHIETLEEIDVEYKELALKSGIEKWGRV-PALGCEATFISDLA 259 (355)
Q Consensus 192 ~~~d~l~~---L~~~G~k~VvVvP~gFvsD~lETl~eid~e~~e~a~~~G~~~~~rv-~~ln~~p~fi~~La 259 (355)
++.++++. ..+.|++.|+++||.|..-.-|-+++ -+++++...++.-+.|= +-.+-+++.+..|+
T Consensus 86 ~t~~~i~~~~~a~~~Gadav~~~pP~y~~~~~~~i~~---~f~~va~~~~lpi~lYn~~g~~l~~~~l~~L~ 154 (303)
T PRK03620 86 GTAQAIEYAQAAERAGADGILLLPPYLTEAPQEGLAA---HVEAVCKSTDLGVIVYNRDNAVLTADTLARLA 154 (303)
T ss_pred CHHHHHHHHHHHHHhCCCEEEECCCCCCCCCHHHHHH---HHHHHHHhCCCCEEEEcCCCCCCCHHHHHHHH
Confidence 56666554 45669999999998776544444443 56777776655533332 32455777766665
No 172
>COG2099 CobK Precorrin-6x reductase [Coenzyme metabolism]
Probab=29.55 E-value=2.8e+02 Score=26.47 Aligned_cols=81 Identities=16% Similarity=0.283 Sum_probs=52.7
Q ss_pred EEecCCCCChHHHHHHHHHHHHHHHhCCCCCceEEEEeeCCCchhhhcccCCchHHHHHHHHHHHHHHhcccccCCceeE
Q 018479 98 TVIPSWYQREGYITAMANLIEKELQNFDSPEQVMIFFSAHGVPLAYVEEAGDPYKAEMEECVDLIMEELEKRKITNAYTL 177 (355)
Q Consensus 98 ~~i~~~~~~p~yi~a~~~~I~~~l~~~~~~~~~~llfsaHgiP~~~v~~~GDpY~~~~~~ta~~v~e~l~~~~~~~~~~l 177 (355)
..+..+..-+++.+.+. + .++.+|. +..-||-.++.+++-.+++.++.. .+
T Consensus 47 ~~~~G~l~~e~l~~~l~--------e----~~i~llI-----------DATHPyAa~iS~Na~~aake~gip------y~ 97 (257)
T COG2099 47 VRVGGFLGAEGLAAFLR--------E----EGIDLLI-----------DATHPYAARISQNAARAAKETGIP------YL 97 (257)
T ss_pred eeecCcCCHHHHHHHHH--------H----cCCCEEE-----------ECCChHHHHHHHHHHHHHHHhCCc------EE
Confidence 45556666665554443 2 2345766 556799999999999999998764 23
Q ss_pred EE-----EecccCCCCCC-CcHHHHHHHHHhcCCceEEE
Q 018479 178 AY-----QSRVGPVEWLK-PYTDETIIKLGQKGVKSLLA 210 (355)
Q Consensus 178 ~f-----QS~~G~~~Wl~-P~~~d~l~~L~~~G~k~VvV 210 (355)
.| +.. +..|+. .+++++.+-+.+.| ++|++
T Consensus 98 r~eRP~~~~~--gd~~~~V~d~~ea~~~~~~~~-~rVfl 133 (257)
T COG2099 98 RLERPPWAPN--GDNWIEVADIEEAAEAAKQLG-RRVFL 133 (257)
T ss_pred EEECCccccC--CCceEEecCHHHHHHHHhccC-CcEEE
Confidence 33 222 355666 78888888777766 55544
No 173
>PF03358 FMN_red: NADPH-dependent FMN reductase; InterPro: IPR005025 NADPH-dependent FMN reductase (1.5.1.29 from EC) reduces FMN and also reduces riboflavin and FAD, although more slowly. Members of this entry catalyse the reaction NAD(P)H + FMN = NAD(P)(+) + FMNH(2).; PDB: 3SVL_B 3GFS_F 3GFQ_A 1NNI_1 2GSW_B 3GFR_D 1T0I_B 3D7N_A 2R97_A 3B6K_A ....
Probab=29.16 E-value=3e+02 Score=22.92 Aligned_cols=76 Identities=17% Similarity=0.105 Sum_probs=46.6
Q ss_pred CCCc-hhHHHHHHHHHHHHHHhccCCCceEEEeeec--------------CCCCHHHHHHHHHHcCCCEEEEeecCcccc
Q 018479 7 LVLS-LAIISCIQAEELRKSLWEKNLPAKVYVGMRY--------------WHPFTEEAIEQIKRDGITKLVVLPLYPQFS 71 (355)
Q Consensus 7 ggSP-L~~~t~~qa~~l~~~L~~~~~~~~V~~amry--------------~~P~i~~~l~~l~~~G~~~IvvlPlyPqyS 71 (355)
-||| -+..|+..++.+.+.+.+.+.++++.---.+ .++.+.+..+++. .+|-||+ ..|.|-
T Consensus 7 ~gS~r~~~~t~~l~~~~~~~l~~~g~e~~~i~l~~~~~p~~~~~~~~~~~~~d~~~~~~~~l~--~aD~iI~--~sP~y~ 82 (152)
T PF03358_consen 7 NGSPRKNSNTRKLAEAVAEQLEEAGAEVEVIDLADYPLPCCDGDFECPCYIPDDVQELYDKLK--EADGIIF--ASPVYN 82 (152)
T ss_dssp ESSSSTTSHHHHHHHHHHHHHHHTTEEEEEEECTTSHCHHHHHHHHHTGCTSHHHHHHHHHHH--HSSEEEE--EEEEBT
T ss_pred ECcCCCCCHHHHHHHHHHHHHHHcCCEEEEEeccccchhhcccccccccCCcHHHHHHHhcee--cCCeEEE--eecEEc
Confidence 4666 8899999999999999877655544433333 2334444455554 4565444 345556
Q ss_pred ccchHHHHHHHHHHH
Q 018479 72 ISTSGSSLRLLESIF 86 (355)
Q Consensus 72 ~~ttgs~~~~~~e~~ 86 (355)
..-++..+.-++...
T Consensus 83 ~~~s~~lK~~lD~~~ 97 (152)
T PF03358_consen 83 GSVSGQLKNFLDRLS 97 (152)
T ss_dssp TBE-HHHHHHHHTHH
T ss_pred CcCChhhhHHHHHhc
Confidence 666766666555543
No 174
>cd06592 GH31_glucosidase_KIAA1161 KIAA1161 is an uncharacterized Homo sapiens protein with a glycosyl hydrolase family 31 (GH31) domain that is homologous to the Escherichia coli YihQ glucosidase. Orthologs of KIA1161 are found in eukaryotes and prokaryotes. In bacteria, YihQ (along with YihO) is important for bacterial O-antigen capsule assembly and translocation. Enzymes of the GH31 family possess a wide range of different hydrolytic activities including alpha-glucosidase (glucoamylase and sucrase-isomaltase), alpha-xylosidase, 6-alpha-glucosyltransferase, 3-alpha-isomaltosyltransferase and alpha-1,4-glucan lyase. All GH31 enzymes cleave a terminal carbohydrate moiety from a substrate that varies considerably in size, depending on the enzyme, and may be either a starch or a glycoprotein.
Probab=28.84 E-value=1.6e+02 Score=28.40 Aligned_cols=102 Identities=13% Similarity=0.051 Sum_probs=59.8
Q ss_pred HHHHHHHHHHHHHHhcccccC-CceeEEEEecccCCCCCC---CcHHHHHHHHHhcCCceEEEEcceecccchhhHHHHH
Q 018479 152 KAEMEECVDLIMEELEKRKIT-NAYTLAYQSRVGPVEWLK---PYTDETIIKLGQKGVKSLLAVPISFVSEHIETLEEID 227 (355)
Q Consensus 152 ~~~~~~ta~~v~e~l~~~~~~-~~~~l~fQS~~G~~~Wl~---P~~~d~l~~L~~~G~k~VvVvP~gFvsD~lETl~eid 227 (355)
++++.++++.+++. +.. +. ...+..||...|.-.|=. |+..+.+++|.++|.|-++.+-|.+..++ + +|+
T Consensus 29 ~~~v~~~~~~~~~~-~iP-~d~i~iD~~w~~~~g~f~~d~~~FPdp~~mi~~l~~~G~k~~l~i~P~i~~~s-~-~~~-- 102 (303)
T cd06592 29 QETVLNYAQEIIDN-GFP-NGQIEIDDNWETCYGDFDFDPTKFPDPKGMIDQLHDLGFRVTLWVHPFINTDS-E-NFR-- 102 (303)
T ss_pred HHHHHHHHHHHHHc-CCC-CCeEEeCCCccccCCccccChhhCCCHHHHHHHHHHCCCeEEEEECCeeCCCC-H-HHH--
Confidence 66777777766653 221 00 012345777666433322 89999999999999987777766555444 2 232
Q ss_pred HHHHHHHHhcCCceEEEc-----C------------CCCCCHHHHHHHHHHHHHhC
Q 018479 228 VEYKELALKSGIEKWGRV-----P------------ALGCEATFISDLADAVIESL 266 (355)
Q Consensus 228 ~e~~e~a~~~G~~~~~rv-----~------------~ln~~p~fi~~La~~V~e~l 266 (355)
+ +.+.|. +.+- | .-=.+|+..+.+.+.+++.+
T Consensus 103 ----e-~~~~g~--~vk~~~g~~~~~~~~w~g~~~~~Dftnp~a~~w~~~~~~~~~ 151 (303)
T cd06592 103 ----E-AVEKGY--LVSEPSGDIPALTRWWNGTAAVLDFTNPEAVDWFLSRLKSLQ 151 (303)
T ss_pred ----h-hhhCCe--EEECCCCCCCcccceecCCcceEeCCCHHHHHHHHHHHHHHH
Confidence 2 223231 2211 1 12357888898888887655
No 175
>KOG4132 consensus Uroporphyrinogen III synthase UROS/HEM4 [Coenzyme transport and metabolism]
Probab=28.78 E-value=5.1e+02 Score=24.54 Aligned_cols=193 Identities=19% Similarity=0.248 Sum_probs=106.1
Q ss_pred HHHHHHHhccCCCceEEEeeecCCCCHHHHHHHHHHcCCCE----EEEeecCccccccchHHHHHHHHHHHHhccccCCc
Q 018479 20 EELRKSLWEKNLPAKVYVGMRYWHPFTEEAIEQIKRDGITK----LVVLPLYPQFSISTSGSSLRLLESIFREDEYLVNM 95 (355)
Q Consensus 20 ~~l~~~L~~~~~~~~V~~amry~~P~i~~~l~~l~~~G~~~----IvvlPlyPqyS~~ttgs~~~~~~e~~~~~~~~~~~ 95 (355)
+.|++.|.. .+=|.|.=|..|..-++++++..+.-++ ....+.| |.|-+-. ..+.
T Consensus 44 ~~lr~kL~~----p~kY~giIfTSpR~VEa~~eaL~q~~tel~~~w~a~~vY------tVG~aT~---~si~-------- 102 (260)
T KOG4132|consen 44 QQLRAKLNN----PPKYAGIIFTSPRCVEALNEALIQTETELKAAWLAKHVY------TVGPATH---ASIR-------- 102 (260)
T ss_pred HHHHHHhcC----chhhceeEEeChHHHHHHHHHhccccchhhhHHhhccee------eeccccH---HHHH--------
Confidence 445666652 3347888888999988888876632111 1111222 2222211 0111
Q ss_pred eeEEecCCCCChHHHHHHHHHHHHHHHhCCCCCceEEEEeeCCCchhhhcccCCchHHHHHHHHHHHHHHhcccccCCce
Q 018479 96 QHTVIPSWYQREGYITAMANLIEKELQNFDSPEQVMIFFSAHGVPLAYVEEAGDPYKAEMEECVDLIMEELEKRKITNAY 175 (355)
Q Consensus 96 ~~~~i~~~~~~p~yi~a~~~~I~~~l~~~~~~~~~~llfsaHgiP~~~v~~~GDpY~~~~~~ta~~v~e~l~~~~~~~~~ 175 (355)
+...+.--+++-+=.+.+++.|.+.... . ...-||| |. |+- -...|..+|...|+..+-
T Consensus 103 ~~~~l~T~Ge~~gNa~~LaD~Ive~~~~--~-~alPLLf-----pc------Gn~-------~rdil~kkL~~~G~~Vds 161 (260)
T KOG4132|consen 103 RLGFLNTHGEDAGNAEILADLIVETFTD--K-RALPLLF-----PC------GNL-------RRDILPKKLHDKGIRVDS 161 (260)
T ss_pred HhcCccccccccccHHHHhHhhhhcCCC--c-ccCceEE-----Ec------ccc-------hhHHHHHHHHhCCceeeE
Confidence 1123344456666777888887765321 1 1223777 32 221 122344556555665556
Q ss_pred eEEEEecccCCCCCCCcHHHHHHHHH-hcCC-ceEEEEcceecccchhhHHHHHH------------HHHHHHHhcCCce
Q 018479 176 TLAYQSRVGPVEWLKPYTDETIIKLG-QKGV-KSLLAVPISFVSEHIETLEEIDV------------EYKELALKSGIEK 241 (355)
Q Consensus 176 ~l~fQS~~G~~~Wl~P~~~d~l~~L~-~~G~-k~VvVvP~gFvsD~lETl~eid~------------e~~e~a~~~G~~~ 241 (355)
-.+|+++. -|++..-++... ..|. .-|+++.|+=+...++++.+... ..++.-++.|.+.
T Consensus 162 ~~VY~T~~------hp~~~~~~~~alk~~~~~d~ivfFSPsgv~~~lq~f~~~~~s~~~~k~aaIGPtT~kaL~~~g~~~ 235 (260)
T KOG4132|consen 162 CEVYETRE------HPDGFKQFIHALKECGFIDWIVFFSPSGVKSSLQYFGDSNRSGDHLKLAAIGPTTRKALEDLGVKV 235 (260)
T ss_pred EEEEeeee------cccHHHHHHHHHHhcCCcceEEEECcchHHHHHHHHHHhccchhheeEEEeCcchHHHHHHcCCCc
Confidence 67899985 577776666644 3454 56788888777777777666332 2455566778776
Q ss_pred EEEcCCCCCCHHHHHHHHHHHHHh
Q 018479 242 WGRVPALGCEATFISDLADAVIES 265 (355)
Q Consensus 242 ~~rv~~ln~~p~fi~~La~~V~e~ 265 (355)
...+|.++ .+.|++.|+..
T Consensus 236 ~~vs~~P~-----pe~L~~~I~~~ 254 (260)
T KOG4132|consen 236 DVVSPAPD-----PESLADAIELY 254 (260)
T ss_pred ceecCCCC-----HHHHHHHHHhh
Confidence 65665544 34556655543
No 176
>TIGR00289 conserved hypothetical protein TIGR00289. Homologous proteins related to MJ0570 of Methanococcus jannaschii include both the apparent orthologs found by this model above the trusted cutoff, the much longer protein YLR143W from Saccharomyces cerevisiae, and second homologous proteins from Archaeoglobus fulgidus and Pyrococcus horikoshii that appear to represent a second orthologous group.
Probab=28.61 E-value=4.8e+02 Score=24.20 Aligned_cols=49 Identities=12% Similarity=0.165 Sum_probs=31.1
Q ss_pred CCchHHHHHHHHHHHHHHhcccccCCceeEEEEecccCCCCCCCcHHHHHHHHHhcCCceEEEE
Q 018479 148 GDPYKAEMEECVDLIMEELEKRKITNAYTLAYQSRVGPVEWLKPYTDETIIKLGQKGVKSLLAV 211 (355)
Q Consensus 148 GDpY~~~~~~ta~~v~e~l~~~~~~~~~~l~fQS~~G~~~Wl~P~~~d~l~~L~~~G~k~VvVv 211 (355)
||-+......-.+.+.+++|.. .++.. |-.+. ++.+ ++.+.|.+.++|.
T Consensus 92 GdI~s~~qr~~~e~vc~~~gl~------~~~PL-------W~~d~-~~l~-e~i~~Gf~aiIv~ 140 (222)
T TIGR00289 92 GAIESNYQKSRIDKVCRELGLK------SIAPL-------WHADP-EKLM-YEVAEKFEVIIVS 140 (222)
T ss_pred CccccHHHHHHHHHHHHHcCCE------Eeccc-------cCCCH-HHHH-HHHHcCCeEEEEE
Confidence 7766555566677788888764 12222 54565 4444 7788999887764
No 177
>KOG0460 consensus Mitochondrial translation elongation factor Tu [Translation, ribosomal structure and biogenesis]
Probab=28.58 E-value=1.4e+02 Score=30.08 Aligned_cols=84 Identities=23% Similarity=0.337 Sum_probs=55.6
Q ss_pred HHHHHHHHHHHHHHhc-ccccCCceeEEEEecccCCCCCCCcHHHHHHHHHhcCCceEEEE-cceecccchhhHHHHHHH
Q 018479 152 KAEMEECVDLIMEELE-KRKITNAYTLAYQSRVGPVEWLKPYTDETIIKLGQKGVKSLLAV-PISFVSEHIETLEEIDVE 229 (355)
Q Consensus 152 ~~~~~~ta~~v~e~l~-~~~~~~~~~l~fQS~~G~~~Wl~P~~~d~l~~L~~~G~k~VvVv-P~gFvsD~lETl~eid~e 229 (355)
+.+|=-.|.-|+..+- ...... --+.--.--|++ |.|.+.|--..+-|+++++|+ -=.-..|.-|.|+-.++|
T Consensus 121 H~DCPGHADYIKNMItGaaqMDG-aILVVaatDG~M----PQTrEHlLLArQVGV~~ivvfiNKvD~V~d~e~leLVEmE 195 (449)
T KOG0460|consen 121 HTDCPGHADYIKNMITGAAQMDG-AILVVAATDGPM----PQTREHLLLARQVGVKHIVVFINKVDLVDDPEMLELVEME 195 (449)
T ss_pred cCCCCchHHHHHHhhcCccccCc-eEEEEEcCCCCC----cchHHHHHHHHHcCCceEEEEEecccccCCHHHHHHHHHH
Confidence 4456556666666552 111111 122222223554 999999987666699999886 346777888999999999
Q ss_pred HHHHHHhcCCc
Q 018479 230 YKELALKSGIE 240 (355)
Q Consensus 230 ~~e~a~~~G~~ 240 (355)
.||+..+.|..
T Consensus 196 ~RElLse~gf~ 206 (449)
T KOG0460|consen 196 IRELLSEFGFD 206 (449)
T ss_pred HHHHHHHcCCC
Confidence 99999988864
No 178
>TIGR03162 ribazole_cobC alpha-ribazole phosphatase. Members of this protein family include the known CobC protein of Salmonella and Eschichia coli species, and homologous proteins found in cobalamin biosynthesis regions in other bacteria. This protein is alpha-ribazole phosphatase (EC 3.1.3.73) and, like many phosphatases, can be closely related in sequence to other phosphatases with different functions. Close homologs excluded from this model include proteins with duplications, so this model is built in -g mode to suppress hits to those proteins.
Probab=28.53 E-value=2.4e+02 Score=24.12 Aligned_cols=124 Identities=17% Similarity=0.200 Sum_probs=59.9
Q ss_pred CCchhHHHHHHHHHHHHHHhccCCCceEEEeeecCCCCHH--HHHHHHHH-cCCCEEEEeecCcccccc-chHHHHHHHH
Q 018479 8 VLSLAIISCIQAEELRKSLWEKNLPAKVYVGMRYWHPFTE--EAIEQIKR-DGITKLVVLPLYPQFSIS-TSGSSLRLLE 83 (355)
Q Consensus 8 gSPL~~~t~~qa~~l~~~L~~~~~~~~V~~amry~~P~i~--~~l~~l~~-~G~~~IvvlPlyPqyS~~-ttgs~~~~~~ 83 (355)
-+||.+.-++|++.+.+.|.....+ .-|+.|... ++.+.+.+ .|.. +.+.|-+=-.... -.|....++.
T Consensus 21 d~~Lt~~G~~qa~~l~~~l~~~~~~------~i~sSpl~Ra~qTA~~i~~~~~~~-~~~~~~L~E~~~G~~~g~~~~~~~ 93 (177)
T TIGR03162 21 DVPLAEKGAEQAAALREKLADVPFD------AVYSSPLSRCRELAEILAERRGLP-IIKDPRLREMDFGDWEGRSWDEIP 93 (177)
T ss_pred CCCcChhHHHHHHHHHHHhcCCCCC------EEEECchHHHHHHHHHHHhhcCCC-ceECCccccccCCccCCCCHHHHH
Confidence 3799999999999999999643222 234577665 45555543 2433 4444432111000 0011112222
Q ss_pred HH---HHhccccCCceeEEecCCCCChHHHHHHHHHHHHHHHhCCCC-CceEEEEeeCCCchhhh
Q 018479 84 SI---FREDEYLVNMQHTVIPSWYQREGYITAMANLIEKELQNFDSP-EQVMIFFSAHGVPLAYV 144 (355)
Q Consensus 84 e~---~~~~~~~~~~~~~~i~~~~~~p~yi~a~~~~I~~~l~~~~~~-~~~~llfsaHgiP~~~v 144 (355)
+. .......+ ..+-.+ ..+.+- .+.+|+.+++.++... ..-.+|++.||..++.+
T Consensus 94 ~~~~~~~~~~~~~---~~~~~~--~gEs~~-~~~~R~~~~~~~l~~~~~~~~vlvVsHg~~i~~l 152 (177)
T TIGR03162 94 EAYPELDAWAADW---QHARPP--GGESFA-DFYQRVSEFLEELLKAHEGDNVLIVTHGGVIRAL 152 (177)
T ss_pred HhCHHHHHHHhCc---ccCCCc--CCCCHH-HHHHHHHHHHHHHHHhCCCCeEEEEECHHHHHHH
Confidence 11 11110001 011112 223333 4567777776654211 22358899999866653
No 179
>PF00701 DHDPS: Dihydrodipicolinate synthetase family; InterPro: IPR002220 Dihydropicolinate synthase (DHDPS) is the key enzyme in lysine biosynthesis via the diaminopimelate pathway of prokaryotes, some phycomycetes and higher plants. The enzyme catalyses the condensation of L-aspartate-beta- semialdehyde and pyruvate to dihydropicolinic acid via a ping-pong mechanism in which pyruvate binds to the enzyme by forming a Schiff-base with a lysine residue []. Three other proteins are structurally related to DHDPS and probably also act via a similar catalytic mechanism. These are Escherichia coli N-acetylneuraminate lyase (4.1.3.3 from EC) (gene nanA), which catalyzes the condensation of N-acetyl-D-mannosamine and pyruvate to form N-acetylneuraminate; Rhizobium meliloti (Sinorhizobium meliloti) protein mosA [], which is involved in the biosynthesis of the rhizopine 3-o-methyl-scyllo-inosamine; and E. coli hypothetical protein yjhH. The sequences of DHDPS from different sources are well-conserved. The structure takes the form of a homotetramer, in which 2 monomers are related by an approximate 2-fold symmetry []. Each monomer comprises 2 domains: an 8-fold alpha-/beta-barrel, and a C-terminal alpha-helical domain. The fold resembles that of N-acetylneuraminate lyase. The active site lysine is located in the barrel domain, and has access via 2 channels on the C-terminal side of the barrel.; GO: 0016829 lyase activity, 0008152 metabolic process; PDB: 3B4U_B 3S8H_A 3QZE_B 1XXX_F 3L21_F 3IRD_A 3A5F_B 3G0S_B 3DAQ_C 3UQN_A ....
Probab=27.83 E-value=3.7e+02 Score=25.39 Aligned_cols=54 Identities=24% Similarity=0.312 Sum_probs=34.1
Q ss_pred CCCceEEEeeecCCCCHHHHHHHH---HHcCCCEEEEeecCccccccchHHHHHHHHHHHH
Q 018479 30 NLPAKVYVGMRYWHPFTEEAIEQI---KRDGITKLVVLPLYPQFSISTSGSSLRLLESIFR 87 (355)
Q Consensus 30 ~~~~~V~~amry~~P~i~~~l~~l---~~~G~~~IvvlPlyPqyS~~ttgs~~~~~~e~~~ 87 (355)
+.+++|..+- +..++.++++.. .+.|++-++++| |.|...|.....+.+.+...
T Consensus 68 ~~~~~vi~gv--~~~st~~~i~~a~~a~~~Gad~v~v~~--P~~~~~s~~~l~~y~~~ia~ 124 (289)
T PF00701_consen 68 AGRVPVIAGV--GANSTEEAIELARHAQDAGADAVLVIP--PYYFKPSQEELIDYFRAIAD 124 (289)
T ss_dssp TTSSEEEEEE--ESSSHHHHHHHHHHHHHTT-SEEEEEE--STSSSCCHHHHHHHHHHHHH
T ss_pred cCceEEEecC--cchhHHHHHHHHHHHhhcCceEEEEec--cccccchhhHHHHHHHHHHh
Confidence 3456777764 455788888755 446999998876 55556666555555555543
No 180
>PRK03170 dihydrodipicolinate synthase; Provisional
Probab=27.15 E-value=5.4e+02 Score=24.33 Aligned_cols=93 Identities=20% Similarity=0.214 Sum_probs=51.5
Q ss_pred HHHHHHHHHHHHHHhcccccCCceeEEEEecccCCCCCCCcHHHHHHH---HHhcCCceEEEEcceecccchhhHHHHHH
Q 018479 152 KAEMEECVDLIMEELEKRKITNAYTLAYQSRVGPVEWLKPYTDETIIK---LGQKGVKSLLAVPISFVSEHIETLEEIDV 228 (355)
Q Consensus 152 ~~~~~~ta~~v~e~l~~~~~~~~~~l~fQS~~G~~~Wl~P~~~d~l~~---L~~~G~k~VvVvP~gFvsD~lETl~eid~ 228 (355)
..|=.+..+.+.+.... +..+.. ..| ..+++++++. ..+.|++.|+++||.|..-.-+.++ .
T Consensus 53 ~~Er~~~~~~~~~~~~~-----~~~vi~--gv~-----~~~~~~~i~~a~~a~~~G~d~v~~~pP~~~~~~~~~i~---~ 117 (292)
T PRK03170 53 HEEHEELIRAVVEAVNG-----RVPVIA--GTG-----SNSTAEAIELTKFAEKAGADGALVVTPYYNKPTQEGLY---Q 117 (292)
T ss_pred HHHHHHHHHHHHHHhCC-----CCcEEe--ecC-----CchHHHHHHHHHHHHHcCCCEEEECCCcCCCCCHHHHH---H
Confidence 44555556666665532 122332 222 3577777765 3456999999999877654334344 3
Q ss_pred HHHHHHHhcCCceEEE-cCC---CCCCHHHHHHHH
Q 018479 229 EYKELALKSGIEKWGR-VPA---LGCEATFISDLA 259 (355)
Q Consensus 229 e~~e~a~~~G~~~~~r-v~~---ln~~p~fi~~La 259 (355)
-++++++..+..-+.| .|. .+-+++++..|+
T Consensus 118 ~~~~ia~~~~~pv~lYn~P~~~g~~l~~~~~~~L~ 152 (292)
T PRK03170 118 HFKAIAEATDLPIILYNVPGRTGVDILPETVARLA 152 (292)
T ss_pred HHHHHHhcCCCCEEEEECccccCCCCCHHHHHHHH
Confidence 5677777665543333 332 224555555543
No 181
>TIGR00696 wecB_tagA_cpsF bacterial polymer biosynthesis proteins, WecB/TagA/CpsF family. The WecG member of this superfamily, believed to be UDP-N-acetyl-D-mannosaminuronic acid transferase, plays a role in enterobacterial common antigen (eca) synthesis in Escherichia coli. Another family member, the Bacillus subtilis TagA protein, is involved in the biosynthesis of the cell wall polymer poly(glycerol phosphate). The third family member, CpsF, CMP-N-acetylneuraminic acid synthetase has a role in the capsular polysaccharide biosynthesis pathway.
Probab=26.99 E-value=4.5e+02 Score=23.36 Aligned_cols=76 Identities=13% Similarity=0.073 Sum_probs=42.9
Q ss_pred HHHHHHHHHHcCCCEEEEeecCccccccchHHHHHHHHHHHHhccccCCceeEEecCCCCChHHHHHHHHHHHHHHHhCC
Q 018479 46 TEEAIEQIKRDGITKLVVLPLYPQFSISTSGSSLRLLESIFREDEYLVNMQHTVIPSWYQREGYITAMANLIEKELQNFD 125 (355)
Q Consensus 46 i~~~l~~l~~~G~~~IvvlPlyPqyS~~ttgs~~~~~~e~~~~~~~~~~~~~~~i~~~~~~p~yi~a~~~~I~~~l~~~~ 125 (355)
+.+.++.+.+.| -++.++= ++-.+.+.+.+.+++ .+|++++.....|+ +|.--+++++.|++.
T Consensus 37 ~~~l~~~~~~~~-~~vfllG--------~~~~v~~~~~~~l~~--~yP~l~i~g~~g~f-~~~~~~~i~~~I~~s----- 99 (177)
T TIGR00696 37 MEELCQRAGKEK-LPIFLYG--------GKPDVLQQLKVKLIK--EYPKLKIVGAFGPL-EPEERKAALAKIARS----- 99 (177)
T ss_pred HHHHHHHHHHcC-CeEEEEC--------CCHHHHHHHHHHHHH--HCCCCEEEEECCCC-ChHHHHHHHHHHHHc-----
Confidence 346666666666 4455432 333344445444442 46888766655666 355555666666553
Q ss_pred CCCceEEEEeeCCCch
Q 018479 126 SPEQVMIFFSAHGVPL 141 (355)
Q Consensus 126 ~~~~~~llfsaHgiP~ 141 (355)
...+||.+=|.|.
T Consensus 100 ---~~dil~VglG~Pk 112 (177)
T TIGR00696 100 ---GAGIVFVGLGCPK 112 (177)
T ss_pred ---CCCEEEEEcCCcH
Confidence 1248998877773
No 182
>cd01917 ACS_2 Acetyl-CoA synthase (ACS), also known as acetyl-CoA decarbonylase, is found in acetogenic and methanogenic organisms and is responsible for the synthesis and breakdown of acetyl-CoA. ACS forms a heterotetramer with carbon monoxide dehydrogenase (CODH) consisting of two ACS and two CODH subunits. CODH reduces carbon dioxide to carbon monoxide and ACS then synthesizes acetyl-CoA from carbon monoxide, CoA, and a methyl group donated by another protein (CoFeSP). ACS has three structural domains, an N-terminal rossman fold domain with a helical region at its N-terminus which interacts with CODH, and two alpha + beta fold domains. A Ni-Fe-S center referred to as the A-cluster is located in the C-terminal domain. A large cavity exists between the three domains which may bind CoA.
Probab=26.41 E-value=2.2e+02 Score=27.64 Aligned_cols=90 Identities=10% Similarity=0.015 Sum_probs=53.3
Q ss_pred ccCCCchhHHHHHHHHHHHHHHhccCCCceEEEeeecCCCCHHHHHHHHHHcCCCEEEEeecCccccccchHHHHHHHHH
Q 018479 5 FVLVLSLAIISCIQAEELRKSLWEKNLPAKVYVGMRYWHPFTEEAIEQIKRDGITKLVVLPLYPQFSISTSGSSLRLLES 84 (355)
Q Consensus 5 igggSPL~~~t~~qa~~l~~~L~~~~~~~~V~~amry~~P~i~~~l~~l~~~G~~~IvvlPlyPqyS~~ttgs~~~~~~e 84 (355)
|-|++| +.+.+.++.+.+++++. +.+..| +...++.++|.+==.=.++.|.-|.++.-|+....-+
T Consensus 133 ivG~a~----~~e~~~~I~~e~q~r~~-lv~l~G---------~i~~q~~E~G~~lg~~~~lvp~G~~ts~~H~~g~AiR 198 (287)
T cd01917 133 ILGRAK----DSKALKKIVDDLMGRGF-MLFLCD---------EIVEQLLEENVKLGLDYIAYPLGNFTQAIHAANYALR 198 (287)
T ss_pred EEecCC----ChHHHHHHHHHHHHCCc-EEEEec---------HHHHHHHHcCCeeccceeEeecCchhhHHHHHHHHHH
Confidence 447888 55567778888887763 222223 6788888888653222335554566666665443322
Q ss_pred HHHhccccCCceeEEecCCCCChHHHHHHHHHH
Q 018479 85 IFREDEYLVNMQHTVIPSWYQREGYITAMANLI 117 (355)
Q Consensus 85 ~~~~~~~~~~~~~~~i~~~~~~p~yi~a~~~~I 117 (355)
+. --+. -+++ ++....+++..+|+
T Consensus 199 aA---liFg-----gv~p-Gn~~ei~dY~~nRV 222 (287)
T cd01917 199 AG---LMFG-----GIEP-GKREEIRDYQRRRV 222 (287)
T ss_pred HH---HHhC-----CCCC-cCHHHHHHHHHhhc
Confidence 21 1122 2345 88888888888776
No 183
>cd00952 CHBPH_aldolase Trans-o-hydroxybenzylidenepyruvate hydratase-aldolase (HBPHA) and trans-2'-carboxybenzalpyruvate hydratase-aldolase (CBPHA). HBPHA catalyzes HBP to salicyaldehyde and pyruvate. This reaction is part of the degradative pathways for naphthalene and naphthalenesulfonates by bacteria. CBPHA is homologous to HBPHA and catalyzes the cleavage of CBP to 2-carboxylbenzaldehyde and pyruvate during the degradation of phenanthrene. They are member of the DHDPS family of Schiff-base-dependent class I aldolases.
Probab=26.28 E-value=2.6e+02 Score=27.11 Aligned_cols=55 Identities=11% Similarity=0.071 Sum_probs=31.7
Q ss_pred cCCCceEEEeeecCCCCHHHHHH---HHHHcCCCEEEEeecCccccccchHHHHHHHHHHHH
Q 018479 29 KNLPAKVYVGMRYWHPFTEEAIE---QIKRDGITKLVVLPLYPQFSISTSGSSLRLLESIFR 87 (355)
Q Consensus 29 ~~~~~~V~~amry~~P~i~~~l~---~l~~~G~~~IvvlPlyPqyS~~ttgs~~~~~~e~~~ 87 (355)
.+.+++|..+- +..++.++++ ...+.|++-++++|- .|-..+.....+.+.+..+
T Consensus 74 ~~grvpvi~Gv--~~~~t~~ai~~a~~A~~~Gad~vlv~~P--~y~~~~~~~l~~yf~~va~ 131 (309)
T cd00952 74 VAGRVPVFVGA--TTLNTRDTIARTRALLDLGADGTMLGRP--MWLPLDVDTAVQFYRDVAE 131 (309)
T ss_pred hCCCCCEEEEe--ccCCHHHHHHHHHHHHHhCCCEEEECCC--cCCCCCHHHHHHHHHHHHH
Confidence 34456677664 3445666666 445579999998874 3444444444444444444
No 184
>cd03174 DRE_TIM_metallolyase DRE-TIM metallolyase superfamily. The DRE-TIM metallolyase superfamily includes 2-isopropylmalate synthase (IPMS), alpha-isopropylmalate synthase (LeuA), 3-hydroxy-3-methylglutaryl-CoA lyase, homocitrate synthase, citramalate synthase, 4-hydroxy-2-oxovalerate aldolase, re-citrate synthase, transcarboxylase 5S, pyruvate carboxylase, AksA, and FrbC. These members all share a conserved triose-phosphate isomerase (TIM) barrel domain consisting of a core beta(8)-alpha(8) motif with the eight parallel beta strands forming an enclosed barrel surrounded by eight alpha helices. The domain has a catalytic center containing a divalent cation-binding site formed by a cluster of invariant residues that cap the core of the barrel. In addition, the catalytic site includes three invariant residues - an aspartate (D), an arginine (R), and a glutamate (E) - which is the basis for the domain name "DRE-TIM".
Probab=26.26 E-value=3.4e+02 Score=24.84 Aligned_cols=44 Identities=9% Similarity=0.074 Sum_probs=31.0
Q ss_pred HHHHhccCCCceEEE--eee--cCCCCHHHHHHHHHHcCCCEEEEeec
Q 018479 23 RKSLWEKNLPAKVYV--GMR--YWHPFTEEAIEQIKRDGITKLVVLPL 66 (355)
Q Consensus 23 ~~~L~~~~~~~~V~~--amr--y~~P~i~~~l~~l~~~G~~~IvvlPl 66 (355)
.+...+.|.++.+.. +++ +...++.+.++.+.+.|++.|.+..+
T Consensus 121 i~~a~~~G~~v~~~~~~~~~~~~~~~~l~~~~~~~~~~g~~~i~l~Dt 168 (265)
T cd03174 121 IEAAKEAGLEVEGSLEDAFGCKTDPEYVLEVAKALEEAGADEISLKDT 168 (265)
T ss_pred HHHHHHCCCeEEEEEEeecCCCCCHHHHHHHHHHHHHcCCCEEEechh
Confidence 334445565555444 456 77778889999999999998886555
No 185
>COG0635 HemN Coproporphyrinogen III oxidase and related Fe-S oxidoreductases [Coenzyme metabolism]
Probab=26.26 E-value=97 Score=31.55 Aligned_cols=58 Identities=12% Similarity=0.025 Sum_probs=0.0
Q ss_pred cccCCCchhHHHHHHHHHHHHHHhcc-CCCceEEEeeecCCCCHH-HHHHHHHHcCCCEE
Q 018479 4 CFVLVLSLAIISCIQAEELRKSLWEK-NLPAKVYVGMRYWHPFTE-EAIEQIKRDGITKL 61 (355)
Q Consensus 4 ~igggSPL~~~t~~qa~~l~~~L~~~-~~~~~V~~amry~~P~i~-~~l~~l~~~G~~~I 61 (355)
.||||.|-.--.++..+.|...-+.- ..+...++.++..+=+++ +-++.+++.|+.||
T Consensus 92 ~~GGGTPslL~~~~l~~ll~~l~~~~~~~~~~~EitiE~nP~~~~~e~~~~l~~~GvNRi 151 (416)
T COG0635 92 YFGGGTPSLLSPEQLERLLKALRELFNDLDPDAEITIEANPGTVEAEKFKALKEAGVNRI 151 (416)
T ss_pred EECCCccccCCHHHHHHHHHHHHHhcccCCCCceEEEEeCCCCCCHHHHHHHHHcCCCEE
No 186
>cd06343 PBP1_ABC_ligand_binding_like_8 Type I periplasmic ligand-binding domain of uncharacterized ABC (ATPase Binding Cassette)-type active transport systems that are predicted to be involved in uptake of amino acids, peptides, or inorganic ions. This subgroup includes the type I periplasmic ligand-binding domain of uncharacterized ABC (ATPase Binding Cassette)-type active transport systems that are predicted to be involved in uptake of amino acids, peptides, or inorganic ions. This subgroup has high sequence similarity to members of the family of hydrophobic amino acid transporters (HAAT), such as leucine/isoleucine/valine binding protein (LIVBP); however its ligand specificity has not been determined experimentally.
Probab=26.22 E-value=3.6e+02 Score=25.85 Aligned_cols=20 Identities=5% Similarity=0.230 Sum_probs=11.1
Q ss_pred ecCCCCHHHHHHHHHHcCCC
Q 018479 40 RYWHPFTEEAIEQIKRDGIT 59 (355)
Q Consensus 40 ry~~P~i~~~l~~l~~~G~~ 59 (355)
.|+.=..+...+.+.+.|.+
T Consensus 155 ~~g~~~~~~~~~~~~~~G~~ 174 (362)
T cd06343 155 DFGKDYLKGLKDGLGDAGLE 174 (362)
T ss_pred HHHHHHHHHHHHHHHHcCCe
Confidence 44444444445556667876
No 187
>PF13407 Peripla_BP_4: Periplasmic binding protein domain; PDB: 3BRS_B 3GBP_A 3GA5_A 1GCG_A 1GCA_A 3H75_A 3D02_A 3L49_B 3EJW_B 3T95_A ....
Probab=26.20 E-value=2.9e+02 Score=24.78 Aligned_cols=57 Identities=14% Similarity=0.233 Sum_probs=33.4
Q ss_pred CCchHHHHHHHHHHHHHHhcccccCCceeEEEEecccCCCCCCCcHHHHHHHHHhcCCceEEEEcce
Q 018479 148 GDPYKAEMEECVDLIMEELEKRKITNAYTLAYQSRVGPVEWLKPYTDETIIKLGQKGVKSLLAVPIS 214 (355)
Q Consensus 148 GDpY~~~~~~ta~~v~e~l~~~~~~~~~~l~fQS~~G~~~Wl~P~~~d~l~~L~~~G~k~VvVvP~g 214 (355)
+++|..++.+-++.-++.++.. +.+.+-+. .-.....+.++++.++|++.|++.|..
T Consensus 9 ~~~~~~~~~~g~~~~a~~~g~~-----~~~~~~~~-----~d~~~q~~~i~~~i~~~~d~Iiv~~~~ 65 (257)
T PF13407_consen 9 DNPFWQQVIKGAKAAAKELGYE-----VEIVFDAQ-----NDPEEQIEQIEQAISQGVDGIIVSPVD 65 (257)
T ss_dssp SSHHHHHHHHHHHHHHHHHTCE-----EEEEEEST-----TTHHHHHHHHHHHHHTTESEEEEESSS
T ss_pred CCHHHHHHHHHHHHHHHHcCCE-----EEEeCCCC-----CCHHHHHHHHHHHHHhcCCEEEecCCC
Confidence 5677777777777777776532 22222222 122445566666777777777777653
No 188
>cd06329 PBP1_SBP_like_3 Periplasmic solute-binding domain of active transport proteins. Periplasmic solute-binding domain of active transport proteins found in bacteria and Archaea. Members of this group are initial receptors in the process of active transport across cellular membrane, but their substrate specificities are not known in detail. However, they closely resemble the group of AmiC and active transport systems for short-chain amides and urea (FmdDEF), and thus are likely to exhibit a ligand-binding mode similar to that of the amide sensor protein AmiC from Pseudomonas aeruginosa. Moreover, this binding domain has high sequence identity to the family of hydrophobic amino acid transporters (HAAT), and thus it may also be involved in transport of amino acids.
Probab=26.18 E-value=5.7e+02 Score=24.28 Aligned_cols=16 Identities=19% Similarity=0.162 Sum_probs=7.4
Q ss_pred CCHHHHHHHHHHcCCC
Q 018479 44 PFTEEAIEQIKRDGIT 59 (355)
Q Consensus 44 P~i~~~l~~l~~~G~~ 59 (355)
+.....+.++++.+.+
T Consensus 188 ~d~~~~i~~l~~~~~d 203 (342)
T cd06329 188 KDFSPYVAKIKASGAD 203 (342)
T ss_pred CchHHHHHHHHHcCCC
Confidence 4444444444444444
No 189
>PF13377 Peripla_BP_3: Periplasmic binding protein-like domain; PDB: 3K9C_B 3BIL_B 3JVD_B 1ZAY_A 1VPW_A 1DBQ_A 2PUA_A 1QQA_A 1PNR_A 1JHZ_A ....
Probab=26.08 E-value=2e+02 Score=23.67 Aligned_cols=41 Identities=17% Similarity=0.165 Sum_probs=26.7
Q ss_pred HHHHHhcCCceEEEEcceecccchhhHHHHHHHHHHHHHhcCCc
Q 018479 197 IIKLGQKGVKSLLAVPISFVSEHIETLEEIDVEYKELALKSGIE 240 (355)
Q Consensus 197 l~~L~~~G~k~VvVvP~gFvsD~lETl~eid~e~~e~a~~~G~~ 240 (355)
++.|.++|+++|.++. ...+.....+--..+++.+.++|..
T Consensus 1 ~~~L~~~G~r~i~~i~---~~~~~~~~~~r~~gf~~~~~~~~~~ 41 (160)
T PF13377_consen 1 VDYLIERGHRRIAFIG---GPPNSSVSRERLEGFREALKEHGIE 41 (160)
T ss_dssp HHHHHHTT-SSEEEEE---SSTTSHHHHHHHHHHHHHHHHTTSE
T ss_pred ChHHHHCCCCeEEEEe---cCCCChhHHHHHHHHHHHHHHCCCC
Confidence 3578899999999887 3333333344334567788888886
No 190
>cd00951 KDGDH 5-dehydro-4-deoxyglucarate dehydratase, also called 5-keto-4-deoxy-glucarate dehydratase (KDGDH), which is member of dihydrodipicolinate synthase (DHDPS) family that comprises several pyruvate-dependent class I aldolases. The enzyme is involved in glucarate metabolism, and its mechanism presumbly involves a Schiff-base intermediate similar to members of DHDPS family. While in the case of Pseudomonas sp. 5-dehydro-4-deoxy-D-glucarate is degraded by KDGDH to 2,5-dioxopentanoate, in certain species of Enterobacteriaceae it is degraded instead to pyruvate and glycerate.
Probab=26.04 E-value=5.8e+02 Score=24.27 Aligned_cols=52 Identities=17% Similarity=0.210 Sum_probs=32.2
Q ss_pred CCceEEEeeecCCCCHHHHHHHH---HHcCCCEEEEeecCccccccchHHHHHHHHHHHH
Q 018479 31 LPAKVYVGMRYWHPFTEEAIEQI---KRDGITKLVVLPLYPQFSISTSGSSLRLLESIFR 87 (355)
Q Consensus 31 ~~~~V~~amry~~P~i~~~l~~l---~~~G~~~IvvlPlyPqyS~~ttgs~~~~~~e~~~ 87 (355)
.+++|..+-- . ++.++++.. .+.|++-++++|- .|...+-....+.+.+..+
T Consensus 68 ~~~pvi~gv~--~-~t~~~i~~a~~a~~~Gad~v~~~pP--~y~~~~~~~i~~~f~~v~~ 122 (289)
T cd00951 68 GRVPVLAGAG--Y-GTATAIAYAQAAEKAGADGILLLPP--YLTEAPQEGLYAHVEAVCK 122 (289)
T ss_pred CCCCEEEecC--C-CHHHHHHHHHHHHHhCCCEEEECCC--CCCCCCHHHHHHHHHHHHh
Confidence 3577887763 3 678877744 5579999988774 4544444444444444443
No 191
>COG2861 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=25.98 E-value=5.8e+02 Score=24.28 Aligned_cols=38 Identities=21% Similarity=0.436 Sum_probs=33.5
Q ss_pred CceEEEeeecCCCCHHHHHHHHHHcCCCEEEEeecCcc
Q 018479 32 PAKVYVGMRYWHPFTEEAIEQIKRDGITKLVVLPLYPQ 69 (355)
Q Consensus 32 ~~~V~~amry~~P~i~~~l~~l~~~G~~~IvvlPlyPq 69 (355)
+..|.+|+-=.-|...+-.++.++.|.+=++=+||-|.
T Consensus 52 p~eVTlA~~P~~~~~~~~~~~A~~~G~evlih~PmeP~ 89 (250)
T COG2861 52 PPEVTLAFAPFAPHAREWAQKARNAGHEVLIHMPMEPF 89 (250)
T ss_pred CccceEEecCCCchhHHHHHHHHhcCCEEEEeccCCcc
Confidence 45788888778888999999999999999999999985
No 192
>PRK07313 phosphopantothenoylcysteine decarboxylase; Validated
Probab=25.82 E-value=84 Score=28.14 Aligned_cols=33 Identities=12% Similarity=0.280 Sum_probs=26.7
Q ss_pred cccCCCCCCCcHHHHHHHHHhcCCceEEEEcc--eecc
Q 018479 182 RVGPVEWLKPYTDETIIKLGQKGVKSLLAVPI--SFVS 217 (355)
Q Consensus 182 ~~G~~~Wl~P~~~d~l~~L~~~G~k~VvVvP~--gFvs 217 (355)
+..+.-|..|-+.+-+++|.+.| +.|+|+ ||++
T Consensus 121 amn~~m~~~p~~~~Nl~~L~~~G---~~vi~p~~g~la 155 (182)
T PRK07313 121 AMNTKMYENPATQRNLKTLKEDG---VQEIEPKEGLLA 155 (182)
T ss_pred CCCHHHhcCHHHHHHHHHHHHCC---CEEECCCCCccc
Confidence 55567899999999999999988 567775 6764
No 193
>PRK13347 coproporphyrinogen III oxidase; Provisional
Probab=25.73 E-value=1.3e+02 Score=30.92 Aligned_cols=59 Identities=3% Similarity=-0.102 Sum_probs=0.0
Q ss_pred ccCCCchhHHHHHHHHHHHHHHhccCCCceEEEeeecCCCCH-HHHHHHHHHcCCCEEEE
Q 018479 5 FVLVLSLAIISCIQAEELRKSLWEKNLPAKVYVGMRYWHPFT-EEAIEQIKRDGITKLVV 63 (355)
Q Consensus 5 igggSPL~~~t~~qa~~l~~~L~~~~~~~~V~~amry~~P~i-~~~l~~l~~~G~~~Ivv 63 (355)
||||.|..--...+.+.++..-+.-+....+.+.++-.+-++ ++.++.|++.|+++|-+
T Consensus 109 fgGGTPs~l~~~~l~~ll~~i~~~~~~~~~~e~tie~~p~~lt~e~l~~L~~~G~~rvsi 168 (453)
T PRK13347 109 WGGGTPTILNPDQFERLMAALRDAFDFAPEAEIAVEIDPRTVTAEMLQALAALGFNRASF 168 (453)
T ss_pred EcCcccccCCHHHHHHHHHHHHHhCCCCCCceEEEEeccccCCHHHHHHHHHcCCCEEEE
No 194
>PRK05628 coproporphyrinogen III oxidase; Validated
Probab=25.66 E-value=6.5e+02 Score=24.78 Aligned_cols=116 Identities=16% Similarity=0.190 Sum_probs=57.2
Q ss_pred ChHHHHHHHHHHHHHHHhCC-CCCceEEEEeeCCCchhhhcccCCch---HHHHHHHHHHHHHHhcccccCCceeEEEEe
Q 018479 106 REGYITAMANLIEKELQNFD-SPEQVMIFFSAHGVPLAYVEEAGDPY---KAEMEECVDLIMEELEKRKITNAYTLAYQS 181 (355)
Q Consensus 106 ~p~yi~a~~~~I~~~l~~~~-~~~~~~llfsaHgiP~~~v~~~GDpY---~~~~~~ta~~v~e~l~~~~~~~~~~l~fQS 181 (355)
.+.|++++.+-|+....... ......-|+- +.|.|- ..++.++.+.|.+..+.. .+++++.-+
T Consensus 35 ~~~Y~~~l~~Ei~~~~~~~~~~~~~i~~i~~----------GGGTPs~l~~~~l~~ll~~i~~~~~~~---~~~e~t~e~ 101 (375)
T PRK05628 35 PDGYLDALRAELELAAAVLGDPAPPVSTVFV----------GGGTPSLLGAEGLARVLDAVRDTFGLA---PGAEVTTEA 101 (375)
T ss_pred HHHHHHHHHHHHHHHHHhhccCCCceeEEEe----------CCCccccCCHHHHHHHHHHHHHhCCCC---CCCEEEEEe
Confidence 35677777777765544331 1122334443 334442 466677777776655432 123444433
Q ss_pred cccCCCCCCCcHHHHHHHHHhcCCceEEEEcceecccchhhH-----HHHHHHHHHHHHhcCCc
Q 018479 182 RVGPVEWLKPYTDETIIKLGQKGVKSLLAVPISFVSEHIETL-----EEIDVEYKELALKSGIE 240 (355)
Q Consensus 182 ~~G~~~Wl~P~~~d~l~~L~~~G~k~VvVvP~gFvsD~lETl-----~eid~e~~e~a~~~G~~ 240 (355)
+- .--+++.|+.|.+.|+.+|-+=.=+|-.+.++.+ .+--.++-+.+++.|+.
T Consensus 102 ~p------~~i~~e~l~~l~~~G~~rvslGvQS~~~~~L~~l~R~~s~~~~~~a~~~l~~~g~~ 159 (375)
T PRK05628 102 NP------ESTSPEFFAALRAAGFTRVSLGMQSAAPHVLAVLDRTHTPGRAVAAAREARAAGFE 159 (375)
T ss_pred CC------CCCCHHHHHHHHHcCCCEEEEecccCCHHHHHHcCCCCCHHHHHHHHHHHHHcCCC
Confidence 21 1124466777777777665543334554444443 12222333445566654
No 195
>PF13653 GDPD_2: Glycerophosphoryl diester phosphodiesterase family; PDB: 3RLG_A 2F9R_B 1XX1_A 3RLH_A.
Probab=25.63 E-value=56 Score=20.66 Aligned_cols=21 Identities=24% Similarity=0.507 Sum_probs=15.3
Q ss_pred CCCCcHHHHHHHHHhcCCceEE
Q 018479 188 WLKPYTDETIIKLGQKGVKSLL 209 (355)
Q Consensus 188 Wl~P~~~d~l~~L~~~G~k~Vv 209 (355)
| .|+..+..+++.+.|+..|.
T Consensus 5 W-T~d~~~~~~~~l~~GVDgI~ 25 (30)
T PF13653_consen 5 W-TPDKPASWRELLDLGVDGIM 25 (30)
T ss_dssp E-T--SHHHHHHHHHHT-SEEE
T ss_pred e-cCCCHHHHHHHHHcCCCEee
Confidence 7 78889999999999988764
No 196
>PRK05954 precorrin-8X methylmutase; Provisional
Probab=25.50 E-value=3e+02 Score=25.36 Aligned_cols=64 Identities=20% Similarity=0.219 Sum_probs=47.0
Q ss_pred CCcHHHHHHHHHhcC-Cce--EEEEcceecccchhhHHHHHHHHHHHHHhcCCceEEEcCCCCCCHHHHHHHHHHH
Q 018479 190 KPYTDETIIKLGQKG-VKS--LLAVPISFVSEHIETLEEIDVEYKELALKSGIEKWGRVPALGCEATFISDLADAV 262 (355)
Q Consensus 190 ~P~~~d~l~~L~~~G-~k~--VvVvP~gFvsD~lETl~eid~e~~e~a~~~G~~~~~rv~~ln~~p~fi~~La~~V 262 (355)
.|+.--.|-+|.++| ++. |+=+|+||+.- .|.|+...+.|+..+...-.-|-|+--+..+..++
T Consensus 130 APTAL~~l~eli~~g~~~PalVIg~PVGFV~A---------~ESKe~L~~~~iP~It~~GrkGGS~vAaAivNALl 196 (203)
T PRK05954 130 APTALLALCQQIRAGRVKPSLVIGVPVGFVSV---------VEAKQALAQLDVPQIRVEGRKGGSPVAAAIVNALL 196 (203)
T ss_pred CHHHHHHHHHHHHcCCCCCCEEEEECCcccCH---------HHHHHHHHhCCCCEEEEecCCCcHHHHHHHHHHHH
Confidence 599999999998887 554 34469999863 14555556778887777777888887777776666
No 197
>cd06349 PBP1_ABC_ligand_binding_like_14 Type I periplasmic ligand-binding domain of uncharacterized ABC (Atpase Binding Cassette)-type active transport systems. This subgroup includes the type I periplasmic ligand-binding domain of uncharacterized ABC (Atpase Binding Cassette)-type active transport systems that are predicted to be involved in the uptake of amino acids, peptides, or inorganic ions. This subgroup has high sequence similarity to members of the family of hydrophobic amino acid transporters (HAAT), such as leucine/isoleucine/valine binding protein (LIVBP); however its ligand specificity has not been determined experimentally.
Probab=25.36 E-value=3.1e+02 Score=25.99 Aligned_cols=13 Identities=8% Similarity=0.166 Sum_probs=8.1
Q ss_pred CCcHHHHHHHHHh
Q 018479 190 KPYTDETIIKLGQ 202 (355)
Q Consensus 190 ~P~~~d~l~~L~~ 202 (355)
.|...+.+++..+
T Consensus 253 ~~~~~~f~~~~~~ 265 (340)
T cd06349 253 RPEVQSFVSAYEA 265 (340)
T ss_pred CHHHHHHHHHHHH
Confidence 4666666666654
No 198
>PRK10076 pyruvate formate lyase II activase; Provisional
Probab=25.33 E-value=4.7e+02 Score=23.92 Aligned_cols=31 Identities=13% Similarity=0.303 Sum_probs=23.5
Q ss_pred HHhcCCc---eEEEcCCCCCCHHHHHHHHHHHHH
Q 018479 234 ALKSGIE---KWGRVPALGCEATFISDLADAVIE 264 (355)
Q Consensus 234 a~~~G~~---~~~rv~~ln~~p~fi~~La~~V~e 264 (355)
..+.|.. +...+|-+||+++-++.+++.+.+
T Consensus 123 l~~~g~~v~iR~~vIPg~nd~~e~i~~ia~~l~~ 156 (213)
T PRK10076 123 LVSEGVNVIPRLPLIPGFTLSRENMQQALDVLIP 156 (213)
T ss_pred HHhCCCcEEEEEEEECCCCCCHHHHHHHHHHHHH
Confidence 3456655 344577789999999999999976
No 199
>TIGR00674 dapA dihydrodipicolinate synthase. Dihydrodipicolinate synthase is a homotetrameric enzyme of lysine biosynthesis. E. coli has several paralogs closely related to dihydrodipicoline synthase (DapA), as well as the more distant N-acetylneuraminate lyase. In Pyrococcus horikoshii, the bidirectional best hit with E. coli is to an uncharacterized paralog of DapA, not DapA itself, and it is omitted from the seed. The putative members from the Chlamydias (pathogens with a parasitic metabolism) are easily the most divergent members of the multiple alignment.
Probab=24.49 E-value=4.2e+02 Score=25.10 Aligned_cols=52 Identities=25% Similarity=0.285 Sum_probs=32.0
Q ss_pred CceEEEeeecCCCCHHHHHHHHH---HcCCCEEEEeecCccccccchHHHHHHHHHHHH
Q 018479 32 PAKVYVGMRYWHPFTEEAIEQIK---RDGITKLVVLPLYPQFSISTSGSSLRLLESIFR 87 (355)
Q Consensus 32 ~~~V~~amry~~P~i~~~l~~l~---~~G~~~IvvlPlyPqyS~~ttgs~~~~~~e~~~ 87 (355)
.++|..+- +..+++++++..+ +.|++-++++| |.|...|-....+.+.+..+
T Consensus 67 ~~~vi~gv--~~~s~~~~i~~a~~a~~~Gad~v~v~p--P~y~~~~~~~i~~~~~~i~~ 121 (285)
T TIGR00674 67 RVPVIAGT--GSNATEEAISLTKFAEDVGADGFLVVT--PYYNKPTQEGLYQHFKAIAE 121 (285)
T ss_pred CCeEEEeC--CCccHHHHHHHHHHHHHcCCCEEEEcC--CcCCCCCHHHHHHHHHHHHh
Confidence 46667664 6667888887554 46999888886 44444444444444444443
No 200
>KOG1322 consensus GDP-mannose pyrophosphorylase/mannose-1-phosphate guanylyltransferase [Cell wall/membrane/envelope biogenesis]
Probab=24.43 E-value=3.1e+02 Score=27.41 Aligned_cols=76 Identities=25% Similarity=0.220 Sum_probs=49.0
Q ss_pred EEEeeecCCCCHHHHHHHHHHcCCCEEEEeecCccccccchHHHHHHHHHHHHhccccCCceeEEecCCCCChHHHHHHH
Q 018479 35 VYVGMRYWHPFTEEAIEQIKRDGITKLVVLPLYPQFSISTSGSSLRLLESIFREDEYLVNMQHTVIPSWYQREGYITAMA 114 (355)
Q Consensus 35 V~~amry~~P~i~~~l~~l~~~G~~~IvvlPlyPqyS~~ttgs~~~~~~e~~~~~~~~~~~~~~~i~~~~~~p~yi~a~~ 114 (355)
|.+| ..|-|.-.++.|++.|+++|+++.-| -+.|..+.+.+.. ...-+ +..+-+.-..|....-=+
T Consensus 35 Vpfg---n~pmI~hqieal~nsGi~~I~la~~y------~s~sl~~~~~k~y---~~~lg--Vei~~s~eteplgtaGpl 100 (371)
T KOG1322|consen 35 VPFG---NKPMILHQIEALINSGITKIVLATQY------NSESLNRHLSKAY---GKELG--VEILASTETEPLGTAGPL 100 (371)
T ss_pred cccC---cchhhHHHHHHHHhCCCcEEEEEEec------CcHHHHHHHHHHh---hhccc--eEEEEEeccCCCcccchH
Confidence 5666 68999999999999999999998876 2233444333333 21122 444444445555555556
Q ss_pred HHHHHHHHhC
Q 018479 115 NLIEKELQNF 124 (355)
Q Consensus 115 ~~I~~~l~~~ 124 (355)
+.+++.|..+
T Consensus 101 ~laR~~L~~~ 110 (371)
T KOG1322|consen 101 ALARDFLWVF 110 (371)
T ss_pred HHHHHHhhhc
Confidence 6678887655
No 201
>TIGR03249 KdgD 5-dehydro-4-deoxyglucarate dehydratase. 5-dehydro-4-deoxyglucarate dehydratase not only catalyzes the dehydration of the substrate (diol to ketone + water), but causes the decarboxylation of the intermediate product to yield 2-oxoglutarate semialdehyde (2,5-dioxopentanoate). The gene for the enzyme is usually observed in the vicinity of transporters and dehydratases handling D-galactarate and D-gluconate as well as aldehyde dehydrogenases which convert the product to alpha-ketoglutarate.
Probab=24.20 E-value=4.3e+02 Score=25.26 Aligned_cols=52 Identities=23% Similarity=0.317 Sum_probs=33.0
Q ss_pred CCceEEEeeecCCCCHHHHHHHHHH---cCCCEEEEeecCccccccchHHHHHHHHHHHH
Q 018479 31 LPAKVYVGMRYWHPFTEEAIEQIKR---DGITKLVVLPLYPQFSISTSGSSLRLLESIFR 87 (355)
Q Consensus 31 ~~~~V~~amry~~P~i~~~l~~l~~---~G~~~IvvlPlyPqyS~~ttgs~~~~~~e~~~ 87 (355)
.+++|..+-- . ++.++++..+. .|++-++++| |.|...+-....+.+.+...
T Consensus 73 g~~pvi~gv~--~-~t~~ai~~a~~a~~~Gadav~~~p--P~y~~~s~~~i~~~f~~v~~ 127 (296)
T TIGR03249 73 GKVPVYTGVG--G-NTSDAIEIARLAEKAGADGYLLLP--PYLINGEQEGLYAHVEAVCE 127 (296)
T ss_pred CCCcEEEecC--c-cHHHHHHHHHHHHHhCCCEEEECC--CCCCCCCHHHHHHHHHHHHh
Confidence 3567777763 2 58888876544 6999888877 55655555455554555443
No 202
>TIGR03455 HisG_C-term ATP phosphoribosyltransferase, C-terminal domain. This domain corresponds to the C-terminal third of the HisG protein. It is absent in many lineages.
Probab=24.19 E-value=72 Score=25.85 Aligned_cols=26 Identities=31% Similarity=0.473 Sum_probs=23.1
Q ss_pred CCcHHHHHHHHHhcCCceEEEEccee
Q 018479 190 KPYTDETIIKLGQKGVKSLLAVPISF 215 (355)
Q Consensus 190 ~P~~~d~l~~L~~~G~k~VvVvP~gF 215 (355)
+..+-+.+.+|.+.|.+.|+|.|+-.
T Consensus 73 ~~~v~~~~~~Lk~~GA~~Ilv~~i~~ 98 (100)
T TIGR03455 73 EKVVNELIDKLKAAGARDILVLPIEK 98 (100)
T ss_pred HHHHHHHHHHHHHcCCCeEEEechHH
Confidence 46888999999999999999999854
No 203
>PRK09058 coproporphyrinogen III oxidase; Provisional
Probab=24.17 E-value=1.5e+02 Score=30.44 Aligned_cols=56 Identities=14% Similarity=0.087 Sum_probs=33.0
Q ss_pred cccCCCchhH---HHHHHHHHHHHHHhccCCCceEEEeeecCCC--CHHHHHHHHHHcCCCEEEE
Q 018479 4 CFVLVLSLAI---ISCIQAEELRKSLWEKNLPAKVYVGMRYWHP--FTEEAIEQIKRDGITKLVV 63 (355)
Q Consensus 4 ~igggSPL~~---~t~~qa~~l~~~L~~~~~~~~V~~amry~~P--~i~~~l~~l~~~G~~~Ivv 63 (355)
.||||+|-.- .-.+..+.+++.+.- ...+.+.++ +.| .-.+-++.|++.|+.+|-+
T Consensus 119 y~GGGTPs~L~~~~l~~ll~~i~~~~~l---~~~~eitiE-~~p~~~t~e~l~~l~~aGvnRiSi 179 (449)
T PRK09058 119 YFGGGTPTALSAEDLARLITALREYLPL---APDCEITLE-GRINGFDDEKADAALDAGANRFSI 179 (449)
T ss_pred EECCCccccCCHHHHHHHHHHHHHhCCC---CCCCEEEEE-eCcCcCCHHHHHHHHHcCCCEEEe
Confidence 4799999863 333344444444421 112233333 334 3568899999999999865
No 204
>TIGR01501 MthylAspMutase methylaspartate mutase, S subunit. This model represents the S (sigma) subunit of methylaspartate mutase (glutamate mutase), a cobalamin-dependent enzyme that catalyzes the first step in a pathway of glutamate fermentation.
Probab=24.06 E-value=1.4e+02 Score=25.47 Aligned_cols=21 Identities=5% Similarity=-0.103 Sum_probs=10.7
Q ss_pred ecCCCCHHHHHHHHHHcCCCE
Q 018479 40 RYWHPFTEEAIEQIKRDGITK 60 (355)
Q Consensus 40 ry~~P~i~~~l~~l~~~G~~~ 60 (355)
-...+.+.+.++.|++.|.+.
T Consensus 63 ~~~~~~~~~~~~~l~~~gl~~ 83 (134)
T TIGR01501 63 GHGEIDCKGLRQKCDEAGLEG 83 (134)
T ss_pred ccCHHHHHHHHHHHHHCCCCC
Confidence 333444555555555555543
No 205
>PRK08208 coproporphyrinogen III oxidase; Validated
Probab=24.02 E-value=1.5e+02 Score=30.11 Aligned_cols=59 Identities=7% Similarity=-0.027 Sum_probs=0.0
Q ss_pred ccCCCchhHHHHHHHHHHHHHHhccCCCc-eEEEeeecCCCCH-HHHHHHHHHcCCCEEEE
Q 018479 5 FVLVLSLAIISCIQAEELRKSLWEKNLPA-KVYVGMRYWHPFT-EEAIEQIKRDGITKLVV 63 (355)
Q Consensus 5 igggSPL~~~t~~qa~~l~~~L~~~~~~~-~V~~amry~~P~i-~~~l~~l~~~G~~~Ivv 63 (355)
||||.|..--..++.+.++..-..-+.+. .+.+.++-.+-.+ ++-++.|++.|+++|-+
T Consensus 97 ~GGGTPs~l~~~~l~~Ll~~i~~~~~~~~~~~eitiE~~P~~lt~e~l~~l~~~G~~rvsl 157 (430)
T PRK08208 97 VGGGTPTLLNAAELEKLFDSVERVLGVDLGNIPKSVETSPATTTAEKLALLAARGVNRLSI 157 (430)
T ss_pred EcCCccccCCHHHHHHHHHHHHHhCCCCCCCceEEEEeCcCcCCHHHHHHHHHcCCCEEEE
No 206
>PF00300 His_Phos_1: Histidine phosphatase superfamily (branch 1); InterPro: IPR013078 The histidine phosphatase superfamily is so named because catalysis centres on a conserved His residue that is transiently phosphorylated during the catalytic cycle. Other conserved residues contribute to a 'phosphate pocket' and interact with the phospho group of substrate before, during and after its transfer to the His residue. Structure and sequence analyses show that different families contribute different additional residues to the 'phosphate pocket' and, more surprisingly, differ in the position, in sequence and in three dimensions, of a catalytically essential acidic residue. The superfamily may be divided into two main branches. The relationship between the two branches is not evident by (PSI-)BLAST but is clear from more sensitive sequence searches and structural comparisons []. The larger branch 1 contains a wide variety of catalytic functions, the best known being fructose 2,6-bisphosphatase (found in a bifunctional protein with 2-phosphofructokinase) and cofactor-dependent phosphoglycerate mutase. The latter is an unusual example of a mutase activity in the superfamily: the vast majority of members appear to be phosphatases. The bacterial regulatory protein phosphatase SixA is also in branch 1 and has a minimal, and possible ancestral-like structure, lacking the large domain insertions that contribute to binding of small molecules in branch 1 members. Phosphoglycerate mutase (5.4.2.1 from EC) (PGAM) and bisphosphoglycerate mutase (5.4.2.4 from EC) (BPGM) are structurally related enzymes that catalyse reactions involving the transfer of phospho groups between the three carbon atoms of phosphoglycerate [, , ]. Both enzymes can catalyse three different reactions with different specificities, the isomerization of 2-phosphoglycerate (2-PGA) to 3-phosphoglycerate (3-PGA) with 2,3-diphosphoglycerate (2,3-DPG) as the primer of the reaction, the synthesis of 2,3-DPG from 1,3-DPG with 3-PGA as a primer and the degradation of 2,3-DPG to 3-PGA (phosphatase 3.1.3.13 from EC activity). In mammals, PGAM is a dimeric protein with two isoforms, the M (muscle) and B (brain) forms. In yeast, PGAM is a tetrameric protein. BPGM is a dimeric protein and is found mainly in erythrocytes where it plays a major role in regulating haemoglobin oxygen affinity as a consequence of controlling 2,3-DPG concentration. The catalytic mechanism of both PGAM and BPGM involves the formation of a phosphohistidine intermediate []. A number of other proteins including, the bifunctional enzyme 6-phosphofructo-2-kinase/fructose-2,6-bisphosphatase [] that catalyses both the synthesis and the degradation of fructose-2,6-bisphosphate and bacterial alpha-ribazole-5'-phosphate phosphatase, which is involved in cobalamin biosynthesis, contain this domain [].; PDB: 1C80_A 1C7Z_B 1TIP_B 1C81_A 1FBT_A 1RII_B 3OI7_B 3LL4_A 3LG2_B 3F3K_B ....
Probab=23.79 E-value=4e+02 Score=21.69 Aligned_cols=123 Identities=18% Similarity=0.178 Sum_probs=62.3
Q ss_pred CchhHHHHHHHHHHHHHHhccCCCceEEEeeecCCCCHH--HHHHHHHH-cCCCEEEEeecCcccccc-chHHHHHHHHH
Q 018479 9 LSLAIISCIQAEELRKSLWEKNLPAKVYVGMRYWHPFTE--EAIEQIKR-DGITKLVVLPLYPQFSIS-TSGSSLRLLES 84 (355)
Q Consensus 9 SPL~~~t~~qa~~l~~~L~~~~~~~~V~~amry~~P~i~--~~l~~l~~-~G~~~IvvlPlyPqyS~~-ttgs~~~~~~e 84 (355)
+||.+.-++||+.+.+.|.+.+....+. |+.|+.. ++.+.+.+ .+ -++.+.|.+--.... --|.....+.+
T Consensus 24 ~~Lt~~G~~qA~~~~~~l~~~~~~~~~i----~~Sp~~R~~qTA~~~~~~~~-~~~~~~~~l~E~~~g~~~g~~~~~~~~ 98 (158)
T PF00300_consen 24 PPLTERGREQARQLGEYLAERDIQIDVI----YSSPLRRCIQTAEIIAEGLG-IEIIVDPRLREIDFGDWEGRPFDEIEE 98 (158)
T ss_dssp TGBEHHHHHHHHHHHHHHHHTTSSCSEE----EEESSHHHHHHHHHHHHHHT-SEEEEEGGGSCCGCGGGTTSBHHHHHH
T ss_pred ccccHHHHHHHHhhcccccccccCceEE----ecCCcchhhhhhchhhcccc-cccccccccccccchhhcccchhhHHh
Confidence 4799999999999999998544333332 2577765 45555544 23 567777776322210 00222333322
Q ss_pred HHH----hcc-ccCCceeEEecCCCCChHHHHHHHHHHHHHHHhCC--CCCceEEEEeeCCCchhh
Q 018479 85 IFR----EDE-YLVNMQHTVIPSWYQREGYITAMANLIEKELQNFD--SPEQVMIFFSAHGVPLAY 143 (355)
Q Consensus 85 ~~~----~~~-~~~~~~~~~i~~~~~~p~yi~a~~~~I~~~l~~~~--~~~~~~llfsaHgiP~~~ 143 (355)
.+. ... .... +-.+ ..+. .+.+..|+..++.... ......+|+..||..++.
T Consensus 99 ~~~~~~~~~~~~~~~----~~~~--~~Es-~~~~~~R~~~~~~~l~~~~~~~~~vliVsHg~~i~~ 157 (158)
T PF00300_consen 99 KFPDEFEAWWSDPYF----YRPP--GGES-WEDFQQRVKQFLDELIAYKRPGENVLIVSHGGFIRA 157 (158)
T ss_dssp HHHHHHHHHHHHTSS----CGST--TSHH-HHHHHHHHHHHHHHHHHHHHTTSEEEEEE-HHHHHH
T ss_pred hhhcccchhhccccc----cccc--cCCC-HHHHHHHHHHHHHHHHHHhCCCCEEEEEecHHHHHh
Confidence 221 100 0010 0001 2223 3445556766665443 122335788999986653
No 207
>cd03145 GAT1_cyanophycinase Type 1 glutamine amidotransferase (GATase1)-like domain found in cyanophycinase. Type 1 glutamine amidotransferase (GATase1)-like domain found in cyanophycinase. This group contains proteins similar to the extracellular cyanophycinases from Pseudomonas anguilliseptica BI (CphE) and Synechocystis sp. PCC 6803 CphB. Cyanophycinases are intracellular exopeptidases which hydrolyze the polymer cyanophycin (multi L-arginyl-poly-L-aspartic acid) to the dipeptide beta-Asp-Arg. Cyanophycinase is believed to be a serine-type exopeptidase having a Ser-His-Glu catalytic triad which differs from the Cys-His-Glu catalytic triad typical of GATase1 domains by having a Ser in place of the reactive Cys at the nucleophile elbow.
Probab=23.77 E-value=4.5e+02 Score=23.92 Aligned_cols=49 Identities=12% Similarity=0.236 Sum_probs=23.1
Q ss_pred ceEEEEcceecccchhhHHHHHHHHHHHHHhcCCceEEEcCCCC----CCHHHHHHHH
Q 018479 206 KSLLAVPISFVSEHIETLEEIDVEYKELALKSGIEKWGRVPALG----CEATFISDLA 259 (355)
Q Consensus 206 k~VvVvP~gFvsD~lETl~eid~e~~e~a~~~G~~~~~rv~~ln----~~p~fi~~La 259 (355)
.+|+++|.+.... - +--.++++.+++.|..+...+..-+ ++|.+.+.|.
T Consensus 30 ~~i~~iptA~~~~-~----~~~~~~~~~~~~lG~~~v~~~~~~~~~~a~~~~~~~~l~ 82 (217)
T cd03145 30 ARIVVIPAASEEP-A----EVGEEYRDVFERLGAREVEVLVIDSREAANDPEVVARLR 82 (217)
T ss_pred CcEEEEeCCCcCh-h----HHHHHHHHHHHHcCCceeEEeccCChHHcCCHHHHHHHH
Confidence 4666676654331 1 1111455555666665444443332 4555555443
No 208
>PF11965 DUF3479: Domain of unknown function (DUF3479); InterPro: IPR022571 This functionally uncharacterised domain, found N-terminal to PF02514 from PFAM, occurs in magnesium chelatase subunit H, which is involved in chlorophyll biosynthesis. It is found in bacteria, green plants and archaea. It is around 160 amino acids in length.; GO: 0016851 magnesium chelatase activity
Probab=23.76 E-value=4.4e+02 Score=23.37 Aligned_cols=53 Identities=9% Similarity=0.134 Sum_probs=31.4
Q ss_pred EEEEeecCccccccchHHHHHHHHHHHHhccccCCce--eEEecCCCCChHHHHHHHHHHH
Q 018479 60 KLVVLPLYPQFSISTSGSSLRLLESIFREDEYLVNMQ--HTVIPSWYQREGYITAMANLIE 118 (355)
Q Consensus 60 ~IvvlPlyPqyS~~ttgs~~~~~~e~~~~~~~~~~~~--~~~i~~~~~~p~yi~a~~~~I~ 118 (355)
|+|+|.+..||+.. ..+...+..++ ..|+++ +.....|..+|.-.+.+.+-|.
T Consensus 2 r~V~vtld~~~~~a----l~~aa~~l~~~--~~p~l~l~~~~~~el~~~~~~~~~~~~aia 56 (164)
T PF11965_consen 2 RFVIVTLDEHYNSA----LYRAAARLNRD--HCPGLELSVFAAAELERDPEALEECEAAIA 56 (164)
T ss_pred EEEEEeCchhhhHH----HHHHHHHHhhc--cCCCeEEEEEeHHHhhcChHHHHHHHHHHH
Confidence 68999999886543 22323332222 246654 4556779888877766655443
No 209
>PTZ00393 protein tyrosine phosphatase; Provisional
Probab=23.69 E-value=3.5e+02 Score=25.58 Aligned_cols=60 Identities=15% Similarity=0.066 Sum_probs=37.1
Q ss_pred cHHHHHHHHHhcCCceEEEEcceecccchhhHHHHHHHHHHHHHhcCCceEEEcCCCCCCH---HHHHHHHHHHHHh
Q 018479 192 YTDETIIKLGQKGVKSLLAVPISFVSEHIETLEEIDVEYKELALKSGIEKWGRVPALGCEA---TFISDLADAVIES 265 (355)
Q Consensus 192 ~~~d~l~~L~~~G~k~VvVvP~gFvsD~lETl~eid~e~~e~a~~~G~~~~~rv~~ln~~p---~fi~~La~~V~e~ 265 (355)
.+.+-|++|.+.|++.|+-++ |..|+ .+.+++.|+. +...|.+..++ ..++.+.+.+.+.
T Consensus 104 ~~~~yl~eLk~~gV~~lVrlc--------E~~Yd-----~~~~~~~GI~-~~~lpipDg~aPs~~~i~~~l~~i~~~ 166 (241)
T PTZ00393 104 LLPLYIKEMKNYNVTDLVRTC--------ERTYN-----DGEITSAGIN-VHELIFPDGDAPTVDIVSNWLTIVNNV 166 (241)
T ss_pred HHHHHHHHHHHcCCCEEEECC--------CCCCC-----HHHHHHcCCe-EEEeecCCCCCCCHHHHHHHHHHHHHH
Confidence 456778999999999988763 12232 1344577885 77777665433 4445555555543
No 210
>PF02401 LYTB: LytB protein; InterPro: IPR003451 Terpenes are among the largest groups of natural products and include compounds such as vitamins, cholesterol and carotenoids. The biosynthesis of all terpenoids begins with one or both of the two C5 precursors of the pathway: isopentenyl diphosphate (IPP) and dimethylallyl diphosphate (DMAPP). In animals, fungi, and certain bacteria, the synthesis of IPP and DMAPP occurs via the well-known mevalonate pathway, however, a second, nonmevalonate terpenoid pathway has been identified in many eubacteria, algae and the chloroplasts of higher plants []. LytB(IspH) catalyses the conversion of 1-hydroy-2-methyl-2-(E)-butenyl 4-diphosphate into IPP and DMAPP in this second pathway The enzyme appears to be responsible for a branch-step in the nonmevalonate pathway, in that IPP and DMAPP are produced in parallel from a single precursor although the exact mechanism of this is not currently fully understood []. Escherichia coli LytB protein had been found to regulate the activity of RelA (guanosine 3',5'-bispyrophosphate synthetase I), which in turn controls the level of a regulatory metabolite. It is involved in penicillin tolerance and the stringent response [].; GO: 0019288 isopentenyl diphosphate biosynthetic process, mevalonate-independent pathway, 0055114 oxidation-reduction process; PDB: 3DNF_B 3SZL_B 3KE8_B 3KEF_B 3SZU_A 3KEL_A 3F7T_B 3KE9_B 3KEM_B 3T0G_A ....
Probab=23.66 E-value=1e+02 Score=29.75 Aligned_cols=87 Identities=20% Similarity=0.222 Sum_probs=41.5
Q ss_pred HHHHHHHHHHHhccccCCceeEEecCCCCChHHHHHHHHHHHHHHHhCC-CCCceEEEEeeCCCchhhhc---ccC----
Q 018479 77 SSLRLLESIFREDEYLVNMQHTVIPSWYQREGYITAMANLIEKELQNFD-SPEQVMIFFSAHGVPLAYVE---EAG---- 148 (355)
Q Consensus 77 s~~~~~~e~~~~~~~~~~~~~~~i~~~~~~p~yi~a~~~~I~~~l~~~~-~~~~~~llfsaHgiP~~~v~---~~G---- 148 (355)
-+.+.++-+.+.....++ ++...-+.=-+|..++.+.++=-..+...+ -++...|+++|||+|....+ .+|
T Consensus 12 GV~rAi~~a~~~~~~~~~-~vy~lG~iIHN~~vv~~L~~~Gv~~v~~~~~~~~g~~ViirAHGv~~~~~~~l~~~g~~vi 90 (281)
T PF02401_consen 12 GVKRAIEIAEEALEEYPG-PVYTLGPIIHNPQVVERLEKRGVKVVDDIDEVPEGDTVIIRAHGVPPEVYEELKERGLEVI 90 (281)
T ss_dssp HHHHHHHHHHHHCCCHSS--EEECS-SSS-HHHHHHHHHCTEEEESSGCGS-TTEEEEE-TT---HHHHHHHHHTTEEEE
T ss_pred cHHHHHHHHHHHHHhcCC-CEEEecCcccCHHHHHHHHHCCCEEecCccccCCCCEEEEeCCCCCHHHHHHHHHcCCEEE
Confidence 334444433333333333 566667777777777666543111111111 13556899999999977542 233
Q ss_pred ---CchHHHHHHHHHHHHH
Q 018479 149 ---DPYKAEMEECVDLIME 164 (355)
Q Consensus 149 ---DpY~~~~~~ta~~v~e 164 (355)
.|+...+++.++...+
T Consensus 91 DaTCP~V~k~~~~v~~~~~ 109 (281)
T PF02401_consen 91 DATCPFVKKIHKIVRKYAK 109 (281)
T ss_dssp E---HHHHHHHHHHHHHHH
T ss_pred ECCChhHHHHHHHHHHHHh
Confidence 3677777777766554
No 211
>PRK05660 HemN family oxidoreductase; Provisional
Probab=23.65 E-value=1.7e+02 Score=29.19 Aligned_cols=57 Identities=9% Similarity=-0.053 Sum_probs=28.5
Q ss_pred cccCCCchh---HHHHHHHHHHHHHHhccCCCceEEEeeec-CCCCHHHHHHHHHHcCCCEEEE
Q 018479 4 CFVLVLSLA---IISCIQAEELRKSLWEKNLPAKVYVGMRY-WHPFTEEAIEQIKRDGITKLVV 63 (355)
Q Consensus 4 ~igggSPL~---~~t~~qa~~l~~~L~~~~~~~~V~~amry-~~P~i~~~l~~l~~~G~~~Ivv 63 (355)
.||||.|.. +.-.+..+.+++.+.-. .+ ..+.+.- ..-.-.+-++.|++.|+++|-+
T Consensus 63 ~~GGGtPs~l~~~~l~~ll~~l~~~~~~~-~~--~eit~e~np~~l~~e~l~~Lk~~Gv~risi 123 (378)
T PRK05660 63 FIGGGTPSLFSAEAIQRLLDGVRARLPFA-PD--AEITMEANPGTVEADRFVGYQRAGVNRISI 123 (378)
T ss_pred EeCCCccccCCHHHHHHHHHHHHHhCCCC-CC--cEEEEEeCcCcCCHHHHHHHHHcCCCEEEe
Confidence 367887775 33333344444443211 11 2233322 1222447777888888887655
No 212
>PLN03116 ferredoxin--NADP+ reductase; Provisional
Probab=23.57 E-value=5.3e+02 Score=24.68 Aligned_cols=49 Identities=16% Similarity=0.171 Sum_probs=27.0
Q ss_pred eeEEEEecccCCCCCCC--cHHHHHHHHHhc------CCceEEEE-cceecccchhhHHH
Q 018479 175 YTLAYQSRVGPVEWLKP--YTDETIIKLGQK------GVKSLLAV-PISFVSEHIETLEE 225 (355)
Q Consensus 175 ~~l~fQS~~G~~~Wl~P--~~~d~l~~L~~~------G~k~VvVv-P~gFvsD~lETl~e 225 (355)
+..++ |+. +..|.+. .+.+.|.+..+. .-..+.+| |.+|+.+..+.|.+
T Consensus 223 ~~~~~-sr~-~~~~~g~~g~v~~~l~~~~~~~~~~~~~~~~vYiCGp~~mv~~v~~~L~~ 280 (307)
T PLN03116 223 YDYAL-SRE-QKNKKGGKMYVQDKIEEYSDEIFKLLDNGAHIYFCGLKGMMPGIQDTLKR 280 (307)
T ss_pred EEEEE-ccC-CcccCCCccchhhHHHHHHHHHHhhhcCCcEEEEeCCHHHHHHHHHHHHH
Confidence 44443 542 2446543 456666553211 22467777 67888877776554
No 213
>PRK05799 coproporphyrinogen III oxidase; Provisional
Probab=23.57 E-value=1.5e+02 Score=29.23 Aligned_cols=58 Identities=19% Similarity=0.203 Sum_probs=29.9
Q ss_pred cccCCCchhHHHHHHHHHHHHHHhccCCCceEEEeeecCCC--CHHHHHHHHHHcCCCEEEE
Q 018479 4 CFVLVLSLAIISCIQAEELRKSLWEKNLPAKVYVGMRYWHP--FTEEAIEQIKRDGITKLVV 63 (355)
Q Consensus 4 ~igggSPL~~~t~~qa~~l~~~L~~~~~~~~V~~amry~~P--~i~~~l~~l~~~G~~~Ivv 63 (355)
.||||.|..-.. .+.+.|.+.+.+.+....+.+.+. .+| .-++.++.|++.|+++|-+
T Consensus 56 ~~gGGtps~l~~-~~l~~L~~~i~~~~~~~~~eitie-~~p~~~t~e~l~~l~~~G~~rvsi 115 (374)
T PRK05799 56 FIGGGTPTYLSL-EALEILKETIKKLNKKEDLEFTVE-GNPGTFTEEKLKILKSMGVNRLSI 115 (374)
T ss_pred EECCCcccCCCH-HHHHHHHHHHHhCCCCCCCEEEEE-eCCCcCCHHHHHHHHHcCCCEEEE
Confidence 478888874222 222233333332222112334443 233 4468888888889987643
No 214
>PF08121 Toxin_33: Waglerin family; InterPro: IPR012637 This family consists of the lethal peptides (waglerins) that are found in the venom of Trimeresurus wagleri (Wagler's pit viper) (Tropidolaemus wagleri). Waglerins are 22-24 residue lethal peptides and are competitive antagonist of the muscle nicotinic receptor (nAChR). Waglerin-1 possesses a distinctive selectivity for the alpha-epsilon interface binding site of the mouse nAChR [].; GO: 0030550 acetylcholine receptor inhibitor activity, 0005576 extracellular region
Probab=23.52 E-value=36 Score=19.44 Aligned_cols=17 Identities=24% Similarity=0.454 Sum_probs=11.6
Q ss_pred hhhhhchhhhhccCCCCC
Q 018479 290 EELLATYDSKRNELPPPV 307 (355)
Q Consensus 290 ~~~~~~~~~~~~~l~~~~ 307 (355)
+|+-+||.+|-. +|-|.
T Consensus 4 pdlrpcyppchy-iprpk 20 (22)
T PF08121_consen 4 PDLRPCYPPCHY-IPRPK 20 (22)
T ss_pred CccccCCCCccc-cCCCC
Confidence 456689999986 54443
No 215
>PRK15004 alpha-ribazole phosphatase; Provisional
Probab=23.48 E-value=5.1e+02 Score=22.80 Aligned_cols=42 Identities=12% Similarity=0.054 Sum_probs=29.1
Q ss_pred CCchhHHHHHHHHHHHHHHhccCCCceEEEeeecCCCCHH--HHHHHHHH
Q 018479 8 VLSLAIISCIQAEELRKSLWEKNLPAKVYVGMRYWHPFTE--EAIEQIKR 55 (355)
Q Consensus 8 gSPL~~~t~~qa~~l~~~L~~~~~~~~V~~amry~~P~i~--~~l~~l~~ 55 (355)
-+||.+.-++|++++.+.|.... +.. =|+.|... ++.+-+.+
T Consensus 24 d~pLt~~G~~Qa~~~~~~l~~~~--~~~----i~sSpl~Ra~qTA~~i~~ 67 (199)
T PRK15004 24 PTPLTARGIEQAQNLHTLLRDVP--FDL----VLCSELERAQHTARLVLS 67 (199)
T ss_pred CCCcCHHHHHHHHHHHHHHhCCC--CCE----EEECchHHHHHHHHHHHh
Confidence 37999999999999999996432 221 25688765 55555543
No 216
>PRK07379 coproporphyrinogen III oxidase; Provisional
Probab=23.42 E-value=1.4e+02 Score=30.10 Aligned_cols=59 Identities=7% Similarity=-0.034 Sum_probs=0.0
Q ss_pred ccCCCchhHHHHHHHHHHHHHHhccCCCceEEEeeecCCCCHH-HHHHHHHHcCCCEEEE
Q 018479 5 FVLVLSLAIISCIQAEELRKSLWEKNLPAKVYVGMRYWHPFTE-EAIEQIKRDGITKLVV 63 (355)
Q Consensus 5 igggSPL~~~t~~qa~~l~~~L~~~~~~~~V~~amry~~P~i~-~~l~~l~~~G~~~Ivv 63 (355)
||||+|-.--...+.+.++...+.-+......+.++-.+=++. +-++.|++.|+++|-+
T Consensus 72 ~GGGTps~l~~~~l~~ll~~i~~~~~~~~~~eit~E~~P~~lt~e~l~~l~~~Gvnrisl 131 (400)
T PRK07379 72 FGGGTPSLLSVEQLERILTTLDQRFGIAPDAEISLEIDPGTFDLEQLQGYRSLGVNRVSL 131 (400)
T ss_pred ECCCccccCCHHHHHHHHHHHHHhCCCCCCCEEEEEeCCCcCCHHHHHHHHHCCCCEEEE
No 217
>TIGR03455 HisG_C-term ATP phosphoribosyltransferase, C-terminal domain. This domain corresponds to the C-terminal third of the HisG protein. It is absent in many lineages.
Probab=23.33 E-value=88 Score=25.32 Aligned_cols=24 Identities=29% Similarity=0.625 Sum_probs=20.8
Q ss_pred CCCHHHHHHHHHHcCCCEEEEeec
Q 018479 43 HPFTEEAIEQIKRDGITKLVVLPL 66 (355)
Q Consensus 43 ~P~i~~~l~~l~~~G~~~IvvlPl 66 (355)
+..+.+.+++|++.|++.|+++|+
T Consensus 73 ~~~v~~~~~~Lk~~GA~~Ilv~~i 96 (100)
T TIGR03455 73 EKVVNELIDKLKAAGARDILVLPI 96 (100)
T ss_pred HHHHHHHHHHHHHcCCCeEEEech
Confidence 445678999999999999999987
No 218
>TIGR02313 HpaI-NOT-DapA 2,4-dihydroxyhept-2-ene-1,7-dioic acid aldolase. This model represents a subset of the DapA (dihydrodipicolinate synthase) family which has apparently evolved a separate function. The product of DapA, dihydrodipicolinate, results from the non-enzymatic cyclization and dehydration of 6-amino-2,4-dihydroxyhept-2-ene-1,7-dioic acid, which is different from the substrate of this reaction only in the presence of the amino group. In the absence of this amino group, and running the reaction in the opposite direction, the reaction corresponds to the HpaI aldolase component of the 4-hydroxyphenylacetic acid catabolism pathway (see TIGR02311). At present, this variant of DapA is found only in Oceanobacillus iheyensis HTE831 and Thermus thermophilus HB27. In both of these cases, one or more other DapA genes can be found and the one identified by this model is part of an operon for 4-hydroxyphenylacetic acid catabolism.
Probab=23.31 E-value=6.6e+02 Score=23.99 Aligned_cols=54 Identities=11% Similarity=0.108 Sum_probs=34.1
Q ss_pred CCceEEEeeecCCCCHHHHHHHH---HHcCCCEEEEeecCccccccchHHHHHHHHHHHHh
Q 018479 31 LPAKVYVGMRYWHPFTEEAIEQI---KRDGITKLVVLPLYPQFSISTSGSSLRLLESIFRE 88 (355)
Q Consensus 31 ~~~~V~~amry~~P~i~~~l~~l---~~~G~~~IvvlPlyPqyS~~ttgs~~~~~~e~~~~ 88 (355)
..++|..+- +..+.+++++.. .+.|++-++++| |.|...+-....+.+.+..++
T Consensus 68 g~~pvi~gv--~~~~t~~ai~~a~~A~~~Gad~v~v~p--P~y~~~~~~~l~~~f~~ia~a 124 (294)
T TIGR02313 68 GRIPFAPGT--GALNHDETLELTKFAEEAGADAAMVIV--PYYNKPNQEALYDHFAEVADA 124 (294)
T ss_pred CCCcEEEEC--CcchHHHHHHHHHHHHHcCCCEEEEcC--ccCCCCCHHHHHHHHHHHHHh
Confidence 356676554 446778887644 446999999888 556665555555555555443
No 219
>PTZ00242 protein tyrosine phosphatase; Provisional
Probab=22.88 E-value=2.8e+02 Score=24.26 Aligned_cols=66 Identities=20% Similarity=0.083 Sum_probs=40.8
Q ss_pred CCCCCCcHHHHHHHHHhcCCceEEEEcceecccchhhHHHHHHHHHHHHHhcCCceEEEcCCCCC---CHHHHHHHHHHH
Q 018479 186 VEWLKPYTDETIIKLGQKGVKSLLAVPISFVSEHIETLEEIDVEYKELALKSGIEKWGRVPALGC---EATFISDLADAV 262 (355)
Q Consensus 186 ~~Wl~P~~~d~l~~L~~~G~k~VvVvP~gFvsD~lETl~eid~e~~e~a~~~G~~~~~rv~~ln~---~p~fi~~La~~V 262 (355)
.|| .+...+-+++|.+.|+++|+-+.- ..|+ .+.....|+. |...|..+. +...++.+.+.+
T Consensus 23 ~P~-~~~~~~~l~~L~~~gI~~Iv~l~~--------~~~~-----~~~~~~~gi~-~~~~p~~D~~~P~~~~i~~~~~~i 87 (166)
T PTZ00242 23 APS-PSNLPLYIKELQRYNVTHLVRVCG--------PTYD-----AELLEKNGIE-VHDWPFDDGAPPPKAVIDNWLRLL 87 (166)
T ss_pred CCC-cccHHHHHHHHHhCCCeEEEecCC--------CCCC-----HHHHHHCCCE-EEecCCCCCCCCCHHHHHHHHHHH
Confidence 455 567778899999999999997631 1122 1234467874 888886543 333344555555
Q ss_pred HHhC
Q 018479 263 IESL 266 (355)
Q Consensus 263 ~e~l 266 (355)
.+.+
T Consensus 88 ~~~~ 91 (166)
T PTZ00242 88 DQEF 91 (166)
T ss_pred HHHH
Confidence 5443
No 220
>PRK08599 coproporphyrinogen III oxidase; Provisional
Probab=22.71 E-value=7.4e+02 Score=24.37 Aligned_cols=136 Identities=15% Similarity=0.197 Sum_probs=72.1
Q ss_pred hHHHHHHHHHHHHHHHhCCCCCceEEEEeeCCCchhhhcccCCch---HHHHHHHHHHHHHHhcccccCCceeEEEEecc
Q 018479 107 EGYITAMANLIEKELQNFDSPEQVMIFFSAHGVPLAYVEEAGDPY---KAEMEECVDLIMEELEKRKITNAYTLAYQSRV 183 (355)
Q Consensus 107 p~yi~a~~~~I~~~l~~~~~~~~~~llfsaHgiP~~~v~~~GDpY---~~~~~~ta~~v~e~l~~~~~~~~~~l~fQS~~ 183 (355)
..|++++.+.|+. ....+. ..+.-|+. +.|.|- ..++.++.+.+.+.++..+ ..+++..++.
T Consensus 31 ~~y~~~l~~Ei~~-~~~~~~-~~i~~i~~----------gGGtpt~l~~~~l~~ll~~i~~~~~~~~---~~eit~e~~p 95 (377)
T PRK08599 31 DEYLDALIKEMNT-YAIRPF-DKLKTIYI----------GGGTPTALSAEQLERLLTAIHRNLPLSG---LEEFTFEANP 95 (377)
T ss_pred HHHHHHHHHHHHH-hhhcCC-CceeEEEe----------CCCCcccCCHHHHHHHHHHHHHhCCCCC---CCEEEEEeCC
Confidence 4688888888843 333221 12222332 335542 6788888888888765432 1345554432
Q ss_pred cCCCCCCCcHHHHHHHHHhcCCceEEEEcceecccchhhHH-----HHHHHHHHHHHhcCCceE--E-EcCCCCCCHHHH
Q 018479 184 GPVEWLKPYTDETIIKLGQKGVKSLLAVPISFVSEHIETLE-----EIDVEYKELALKSGIEKW--G-RVPALGCEATFI 255 (355)
Q Consensus 184 G~~~Wl~P~~~d~l~~L~~~G~k~VvVvP~gFvsD~lETl~-----eid~e~~e~a~~~G~~~~--~-rv~~ln~~p~fi 255 (355)
+ --..+.++.|++.|+.+|-+=.=+|-.+.++.+- +--.++-+.+++.|+..+ . -+-.++.+.+=+
T Consensus 96 ~------~l~~e~l~~l~~~G~~rvsiGvqS~~~~~l~~l~r~~~~~~~~~~i~~l~~~g~~~v~~dli~GlPgqt~~~~ 169 (377)
T PRK08599 96 G------DLTKEKLQVLKDSGVNRISLGVQTFNDELLKKIGRTHNEEDVYEAIANAKKAGFDNISIDLIYALPGQTIEDF 169 (377)
T ss_pred C------CCCHHHHHHHHHcCCCEEEEecccCCHHHHHHcCCCCCHHHHHHHHHHHHHcCCCcEEEeeecCCCCCCHHHH
Confidence 1 1256788888888887655444355444443331 112234455667776422 1 234466666544
Q ss_pred HHHHHHHH
Q 018479 256 SDLADAVI 263 (355)
Q Consensus 256 ~~La~~V~ 263 (355)
....+.+.
T Consensus 170 ~~~l~~~~ 177 (377)
T PRK08599 170 KESLAKAL 177 (377)
T ss_pred HHHHHHHH
Confidence 44444443
No 221
>COG1312 UxuA D-mannonate dehydratase [Carbohydrate transport and metabolism]
Probab=22.68 E-value=1.1e+02 Score=30.38 Aligned_cols=65 Identities=23% Similarity=0.364 Sum_probs=45.3
Q ss_pred CCCCcHHHHHHHHHhcCCceEEEEcceecccchhhHHHHHHHHHHHHHhcCCceEEEcCCCCCCHHH
Q 018479 188 WLKPYTDETIIKLGQKGVKSLLAVPISFVSEHIETLEEIDVEYKELALKSGIEKWGRVPALGCEATF 254 (355)
Q Consensus 188 Wl~P~~~d~l~~L~~~G~k~VvVvP~gFvsD~lETl~eid~e~~e~a~~~G~~~~~rv~~ln~~p~f 254 (355)
|.+|+-...|+.+.+.|++.|+=..+.--.+..=.+++|-. .++..++.|+ .+..+++.+-|..+
T Consensus 7 w~g~~D~v~l~~irQ~Gv~gIV~aLh~iP~g~~W~~~~I~~-~k~~ie~~Gl-~~~vvESvPvhedI 71 (362)
T COG1312 7 WYGPNDPVTLEDIRQAGVKGVVTALHHIPAGEVWPVEEILK-RKEEIESAGL-TWSVVESVPVHEDI 71 (362)
T ss_pred EecCCCCccHHHHHHhCccceeccCCCCCCCCcCcHHHHHH-HHHHHHHcCc-eEEeecCCCHHHHH
Confidence 77775556677777779999998876555554444454433 5667778887 49999998877653
No 222
>cd00945 Aldolase_Class_I Class I aldolases. The class I aldolases use an active-site lysine which stablilzes a reaction intermediates via Schiff base formation, and have TIM beta/alpha barrel fold. The members of this family include 2-keto-3-deoxy-6-phosphogluconate (KDPG) and 2-keto-4-hydroxyglutarate (KHG) aldolases, transaldolase, dihydrodipicolinate synthase sub-family, Type I 3-dehydroquinate dehydratase, DeoC and DhnA proteins, and metal-independent fructose-1,6-bisphosphate aldolase. Although structurally similar, the class II aldolases use a different mechanism and are believed to have an independent evolutionary origin.
Probab=22.61 E-value=4.8e+02 Score=22.32 Aligned_cols=62 Identities=18% Similarity=0.045 Sum_probs=27.9
Q ss_pred HHHHhcCCceEEEEcce-ecccc-hhhHHHHHHHHHHHHHh--cCCceEEEcCCCCC-CHHHHHHHHHHH
Q 018479 198 IKLGQKGVKSLLAVPIS-FVSEH-IETLEEIDVEYKELALK--SGIEKWGRVPALGC-EATFISDLADAV 262 (355)
Q Consensus 198 ~~L~~~G~k~VvVvP~g-FvsD~-lETl~eid~e~~e~a~~--~G~~~~~rv~~ln~-~p~fi~~La~~V 262 (355)
++..+.|++.|.+.|+. +..+. .|-+.+ .+++++.+ .++.-+.+.-.-.. +++.+..++++.
T Consensus 72 ~~a~~~Gad~i~v~~~~~~~~~~~~~~~~~---~~~~i~~~~~~~~pv~iy~~p~~~~~~~~~~~~~~~~ 138 (201)
T cd00945 72 EEAIDLGADEIDVVINIGSLKEGDWEEVLE---EIAAVVEAADGGLPLKVILETRGLKTADEIAKAARIA 138 (201)
T ss_pred HHHHHcCCCEEEEeccHHHHhCCCHHHHHH---HHHHHHHHhcCCceEEEEEECCCCCCHHHHHHHHHHH
Confidence 34455688888776543 32221 233333 44555544 35543333321122 455544444444
No 223
>COG1213 Predicted sugar nucleotidyltransferases [Cell envelope biogenesis, outer membrane]
Probab=22.53 E-value=79 Score=29.82 Aligned_cols=32 Identities=19% Similarity=0.341 Sum_probs=28.3
Q ss_pred CcHHHHHHHHHhcCCceEEEEcceecccchhh
Q 018479 191 PYTDETIIKLGQKGVKSLLAVPISFVSEHIET 222 (355)
Q Consensus 191 P~~~d~l~~L~~~G~k~VvVvP~gFvsD~lET 222 (355)
|=+.-.++.|++.|+++++||.-||-.|-+|-
T Consensus 32 ~ii~~~i~~L~~~gi~e~vvV~~g~~~~lve~ 63 (239)
T COG1213 32 EIIYRTIENLAKAGITEFVVVTNGYRADLVEE 63 (239)
T ss_pred EeHHHHHHHHHHcCCceEEEEeccchHHHHHH
Confidence 56777899999999999999999999998874
No 224
>COG1625 Fe-S oxidoreductase, related to NifB/MoaA family [Energy production and conversion]
Probab=22.40 E-value=2.7e+02 Score=28.42 Aligned_cols=115 Identities=16% Similarity=0.143 Sum_probs=67.2
Q ss_pred EEEeeCCCchhh-hcccCCchHHHHHHHHHHHHHHhcccccCCceeEEEEecccCCCCCCCcHHHHHHHHHhcCCceEEE
Q 018479 132 IFFSAHGVPLAY-VEEAGDPYKAEMEECVDLIMEELEKRKITNAYTLAYQSRVGPVEWLKPYTDETIIKLGQKGVKSLLA 210 (355)
Q Consensus 132 llfsaHgiP~~~-v~~~GDpY~~~~~~ta~~v~e~l~~~~~~~~~~l~fQS~~G~~~Wl~P~~~d~l~~L~~~G~k~VvV 210 (355)
|=||-|+.=-.. .+=-+|+-..+..+.-+.++++- .++--|.-.-|+-==+=.+.++++.|.+.|.+.+.+
T Consensus 139 v~~SVhtT~p~lR~klm~n~~A~~~le~L~~f~~~~--------~~v~a~iVl~PGvNdge~L~kT~~dL~~~g~~~~~~ 210 (414)
T COG1625 139 VYFSVHTTNPELRAKLMKNPNAEQLLELLRRFAERC--------IEVHAQIVLCPGVNDGEELEKTLEDLEEWGAHEVIL 210 (414)
T ss_pred eEEEEeeCCHHHHHHHhcCCcHHHHHHHHHHHHHhh--------hheeeEEEEcCCcCcHHHHHHHHHHHHHhCcCceeE
Confidence 778888852111 10014555555555545444431 223334433221111345667888888889888777
Q ss_pred E---cceecccch--------hhHHHHHHHHHHHHHhcCCceEEEcCCCCCCHHHHH
Q 018479 211 V---PISFVSEHI--------ETLEEIDVEYKELALKSGIEKWGRVPALGCEATFIS 256 (355)
Q Consensus 211 v---P~gFvsD~l--------ETl~eid~e~~e~a~~~G~~~~~rv~~ln~~p~fi~ 256 (355)
+ |.|-+.-+- +++.++..-.++..++.|- |..++++--++.+=+
T Consensus 211 ~~~~pvGlt~~n~~~i~~~t~~~l~~~k~i~re~~~E~~~--~~V~g~Pl~~~~~~e 265 (414)
T COG1625 211 MRVVPVGLTRYNRPGIRPPTPHELEEFKEIVREFDRELGS--IRVTGTPLPDALLGE 265 (414)
T ss_pred EEeecceeeecCCCCCCCCCHHHHHHHHHHHHHHHHhcCc--eEEeCCCCCchhhcC
Confidence 7 988766554 6677777777788888883 777777666665433
No 225
>COG3473 Maleate cis-trans isomerase [Secondary metabolites biosynthesis, transport, and catabolism]
Probab=22.33 E-value=2.2e+02 Score=26.65 Aligned_cols=51 Identities=20% Similarity=0.299 Sum_probs=34.8
Q ss_pred CcHHHHHHHHHhcCCceEEEE-cceecccchhhHHHHHHHHHHHHHhcCCceEEEcCCCCCCH
Q 018479 191 PYTDETIIKLGQKGVKSLLAV-PISFVSEHIETLEEIDVEYKELALKSGIEKWGRVPALGCEA 252 (355)
Q Consensus 191 P~~~d~l~~L~~~G~k~VvVv-P~gFvsD~lETl~eid~e~~e~a~~~G~~~~~rv~~ln~~p 252 (355)
|++. +++.|...|+++|.|+ || +.|+...-.+.++++|+. +....|||-.+
T Consensus 105 ts~A-vv~aL~al~a~ri~vlTPY---------~~evn~~e~ef~~~~Gfe-iv~~~~Lgi~d 156 (238)
T COG3473 105 TSTA-VVEALNALGAQRISVLTPY---------IDEVNQREIEFLEANGFE-IVDFKGLGITD 156 (238)
T ss_pred chHH-HHHHHHhhCcceEEEeccc---------hhhhhhHHHHHHHhCCeE-EEEeeccCCcc
Confidence 4443 6777777899998887 54 233344456777788884 88888887543
No 226
>PLN02673 quinolinate synthetase A
Probab=22.21 E-value=6.1e+02 Score=27.86 Aligned_cols=18 Identities=22% Similarity=0.538 Sum_probs=12.2
Q ss_pred cCCceEEEEcceecccch
Q 018479 203 KGVKSLLAVPISFVSEHI 220 (355)
Q Consensus 203 ~G~k~VvVvP~gFvsD~l 220 (355)
.+.+.|+++-.-|++++.
T Consensus 315 ~~a~~IVFcGV~FMAEtA 332 (724)
T PLN02673 315 AGCQFITVLGVDFMSENV 332 (724)
T ss_pred CCCCEEEEeceeeHHhhH
Confidence 366677777777877554
No 227
>PRK09249 coproporphyrinogen III oxidase; Provisional
Probab=22.21 E-value=1.7e+02 Score=29.97 Aligned_cols=58 Identities=9% Similarity=0.062 Sum_probs=0.0
Q ss_pred ccCCCchhHHHHHHHHHHHHHHhccCCCceEEEeeecCCC--CHHHHHHHHHHcCCCEEEE
Q 018479 5 FVLVLSLAIISCIQAEELRKSLWEKNLPAKVYVGMRYWHP--FTEEAIEQIKRDGITKLVV 63 (355)
Q Consensus 5 igggSPL~~~t~~qa~~l~~~L~~~~~~~~V~~amry~~P--~i~~~l~~l~~~G~~~Ivv 63 (355)
||||.|..-...++.+.+...-+.-+..-.+.+.++ ..| .-++.++.|++.|+++|-+
T Consensus 108 ~gGGtPs~l~~~~l~~ll~~l~~~~~~~~~~e~tie-~np~~lt~e~l~~l~~aG~~risi 167 (453)
T PRK09249 108 WGGGTPTFLSPEQLRRLMALLREHFNFAPDAEISIE-IDPRELDLEMLDALRELGFNRLSL 167 (453)
T ss_pred ECCcccccCCHHHHHHHHHHHHHhCCCCCCCEEEEE-ecCCcCCHHHHHHHHHcCCCEEEE
No 228
>PRK06294 coproporphyrinogen III oxidase; Provisional
Probab=22.16 E-value=1.7e+02 Score=29.08 Aligned_cols=54 Identities=15% Similarity=0.167 Sum_probs=29.4
Q ss_pred ccCCCchhHHHHHHHHHHHHHHhccCCCceEEEeeecCCCC-H-HHHHHHHHHcCCCEEEE
Q 018479 5 FVLVLSLAIISCIQAEELRKSLWEKNLPAKVYVGMRYWHPF-T-EEAIEQIKRDGITKLVV 63 (355)
Q Consensus 5 igggSPL~~~t~~qa~~l~~~L~~~~~~~~V~~amry~~P~-i-~~~l~~l~~~G~~~Ivv 63 (355)
||||+|..--...+.+.++ .+.+. .. ..+.+. ..|. + ++-++.|++.|+++|-+
T Consensus 64 ~GGGTPs~l~~~~l~~ll~-~i~~~-~~--~eit~E-~~P~~~~~~~l~~l~~~G~nrisl 119 (370)
T PRK06294 64 FGGGTPSLVPPALIQDILK-TLEAP-HA--TEITLE-ANPENLSESYIRALALTGINRISI 119 (370)
T ss_pred ECCCccccCCHHHHHHHHH-HHHhC-CC--CeEEEE-eCCCCCCHHHHHHHHHCCCCEEEE
Confidence 5888886554444433333 34322 11 223332 2333 2 57788888888887754
No 229
>cd06348 PBP1_ABC_ligand_binding_like_13 Type I periplasmic ligand-binding domain of uncharacterized ABC (Atpase Binding Cassette)-type active transport systems that are predicted to be involved in uptake of amino acids, peptides, or inorganic ions. This subgroup includes the type I periplasmic ligand-binding domain of uncharacterized ABC (Atpase Binding Cassette)-type active transport systems that are predicted to be involved in uptake of amino acids, peptides, or inorganic ions. This subgroup has high sequence similarity to members of the family of hydrophobic amino acid transporters (HAAT), such as leucine/isoleucine/valine binding protein (LIVBP); however its ligand specificity has not been determined experimentally.
Probab=21.94 E-value=2.8e+02 Score=26.36 Aligned_cols=15 Identities=7% Similarity=-0.212 Sum_probs=6.2
Q ss_pred HHHHHHHHHHHHhcC
Q 018479 224 EEIDVEYKELALKSG 238 (355)
Q Consensus 224 ~eid~e~~e~a~~~G 238 (355)
||.-.-+.+..++.|
T Consensus 281 yda~~~~~~A~~~a~ 295 (344)
T cd06348 281 FDAVQVVAEALKRLN 295 (344)
T ss_pred HHHHHHHHHHHHHhc
Confidence 443333444444444
No 230
>PRK05628 coproporphyrinogen III oxidase; Validated
Probab=21.93 E-value=1.5e+02 Score=29.27 Aligned_cols=56 Identities=13% Similarity=0.061 Sum_probs=30.8
Q ss_pred cccCCCchh---HHHHHHHHHHHHHHhccCCCceEEEeeecCCC--CHHHHHHHHHHcCCCEEEE
Q 018479 4 CFVLVLSLA---IISCIQAEELRKSLWEKNLPAKVYVGMRYWHP--FTEEAIEQIKRDGITKLVV 63 (355)
Q Consensus 4 ~igggSPL~---~~t~~qa~~l~~~L~~~~~~~~V~~amry~~P--~i~~~l~~l~~~G~~~Ivv 63 (355)
.||||+|.. ..-++..+.+.+.+. ....+++.++- .| .-++-++.|++.|+++|-+
T Consensus 64 ~~GGGTPs~l~~~~l~~ll~~i~~~~~---~~~~~e~t~e~-~p~~i~~e~l~~l~~~G~~rvsl 124 (375)
T PRK05628 64 FVGGGTPSLLGAEGLARVLDAVRDTFG---LAPGAEVTTEA-NPESTSPEFFAALRAAGFTRVSL 124 (375)
T ss_pred EeCCCccccCCHHHHHHHHHHHHHhCC---CCCCCEEEEEe-CCCCCCHHHHHHHHHcCCCEEEE
Confidence 478999874 333344444443332 11122344332 33 2347888888889987765
No 231
>cd06331 PBP1_AmiC_like Type I periplasmic components of amide-binding protein (AmiC) and the active transport system for short-chain and urea (FmdDEF). This group includes the type I periplasmic components of amide-binding protein (AmiC) and the active transport system for short-chain and urea (FmdDEF), found in bacteria and Archaea. AmiC controls expression of the amidase operon by a ligand-triggered conformational switch. In the absence of ligand or presence of butyramide (repressor), AmiC (the ligand sensor and negative regulator) adopts an open conformation and inhibits the transcription antitermination function of AmiR by direct protein-protein interaction. In the presence of inducing ligands such as acetamide, AmiC adopts a closed conformation which disrupts a silencing AmiC-AmiR complex and the expression of amidase and other genes of the operon is induced. FmdDEF is predicted to be an ATP-dependent transporter and closely resembles the periplasmic binding protein and the two t
Probab=21.91 E-value=5.2e+02 Score=24.39 Aligned_cols=20 Identities=15% Similarity=0.047 Sum_probs=9.0
Q ss_pred HHHH-HHHHcCCCEEEEeecCc
Q 018479 48 EAIE-QIKRDGITKLVVLPLYP 68 (355)
Q Consensus 48 ~~l~-~l~~~G~~~IvvlPlyP 68 (355)
++++ .+.+.|.+- +..-.||
T Consensus 150 ~~~~~~~~~~G~~v-v~~~~~~ 170 (333)
T cd06331 150 RIARALLEELGGEV-VGEEYLP 170 (333)
T ss_pred HHHHHHHHHcCCEE-EEEEEec
Confidence 4443 444457553 3333454
No 232
>cd00408 DHDPS-like Dihydrodipicolinate synthase family. A member of the class I aldolases, which use an active-site lysine which stablilzes a reaction intermediate via Schiff base formation, and have TIM beta/alpha barrel fold. The dihydrodipicolinate synthase family comprises several pyruvate-dependent class I aldolases that use the same catalytic step to catalyze different reactions in different pathways and includes such proteins as N-acetylneuraminate lyase, MosA protein, 5-keto-4-deoxy-glucarate dehydratase, trans-o-hydroxybenzylidenepyruvate hydratase-aldolase, trans-2'-carboxybenzalpyruvate hydratase-aldolase, and 2-keto-3-deoxy- gluconate aldolase. The family is also referred to as the N-acetylneuraminate lyase (NAL) family.
Probab=21.91 E-value=6.6e+02 Score=23.45 Aligned_cols=94 Identities=20% Similarity=0.268 Sum_probs=55.0
Q ss_pred HHHHHHHHHHHHHHhcccccCCceeEEEEecccCCCCCCCcHHHHHHH---HHhcCCceEEEEcceecccchhhHHHHHH
Q 018479 152 KAEMEECVDLIMEELEKRKITNAYTLAYQSRVGPVEWLKPYTDETIIK---LGQKGVKSLLAVPISFVSEHIETLEEIDV 228 (355)
Q Consensus 152 ~~~~~~ta~~v~e~l~~~~~~~~~~l~fQS~~G~~~Wl~P~~~d~l~~---L~~~G~k~VvVvP~gFvsD~lETl~eid~ 228 (355)
..|-.+..+.+.+..+. +..+.... | .+++.++++. ..+.|++.|++.||.|..-.-|-+++
T Consensus 49 ~~Er~~l~~~~~~~~~~-----~~~vi~gv--~-----~~~~~~~i~~a~~a~~~Gad~v~v~pP~y~~~~~~~~~~--- 113 (281)
T cd00408 49 DEERKEVIEAVVEAVAG-----RVPVIAGV--G-----ANSTREAIELARHAEEAGADGVLVVPPYYNKPSQEGIVA--- 113 (281)
T ss_pred HHHHHHHHHHHHHHhCC-----CCeEEEec--C-----CccHHHHHHHHHHHHHcCCCEEEECCCcCCCCCHHHHHH---
Confidence 44555566666666532 23343332 2 4677777664 45569999999999887744344443
Q ss_pred HHHHHHHhcCCceEEE-cCC---CCCCHHHHHHHHH
Q 018479 229 EYKELALKSGIEKWGR-VPA---LGCEATFISDLAD 260 (355)
Q Consensus 229 e~~e~a~~~G~~~~~r-v~~---ln~~p~fi~~La~ 260 (355)
-++++++..+..-+.| .|. .+-+++++..|++
T Consensus 114 ~~~~ia~~~~~pi~iYn~P~~tg~~l~~~~~~~L~~ 149 (281)
T cd00408 114 HFKAVADASDLPVILYNIPGRTGVDLSPETIARLAE 149 (281)
T ss_pred HHHHHHhcCCCCEEEEECccccCCCCCHHHHHHHhc
Confidence 5677777655543333 343 3556666666653
No 233
>PLN02417 dihydrodipicolinate synthase
Probab=21.64 E-value=6.9e+02 Score=23.62 Aligned_cols=66 Identities=17% Similarity=0.095 Sum_probs=40.3
Q ss_pred CCcHHHHHHHH---HhcCCceEEEEcceecccchhhHHHHHHHHHHHHHhcCCceEEEcCC---CCCCHHHHHHHH
Q 018479 190 KPYTDETIIKL---GQKGVKSLLAVPISFVSEHIETLEEIDVEYKELALKSGIEKWGRVPA---LGCEATFISDLA 259 (355)
Q Consensus 190 ~P~~~d~l~~L---~~~G~k~VvVvP~gFvsD~lETl~eid~e~~e~a~~~G~~~~~rv~~---ln~~p~fi~~La 259 (355)
.++|.++++.. .+.|++.|+++||.|..-.-|-+++ -++++++..++. +.-.|. .+-+++.+..|+
T Consensus 79 ~~~t~~~i~~a~~a~~~Gadav~~~~P~y~~~~~~~i~~---~f~~va~~~pi~-lYn~P~~tg~~l~~~~l~~l~ 150 (280)
T PLN02417 79 SNSTREAIHATEQGFAVGMHAALHINPYYGKTSQEGLIK---HFETVLDMGPTI-IYNVPGRTGQDIPPEVIFKIA 150 (280)
T ss_pred CccHHHHHHHHHHHHHcCCCEEEEcCCccCCCCHHHHHH---HHHHHHhhCCEE-EEEChhHhCcCCCHHHHHHHh
Confidence 57888888764 4569999999998776544444444 556666543322 222332 345666665554
No 234
>PRK06740 histidinol-phosphatase; Validated
Probab=21.64 E-value=5.4e+02 Score=25.20 Aligned_cols=42 Identities=17% Similarity=0.172 Sum_probs=31.2
Q ss_pred HHHHHHHHHHHHHHhcc---CCCceEEEeeecCCCCHHHHHHHHHHcCCCEEEE
Q 018479 13 IISCIQAEELRKSLWEK---NLPAKVYVGMRYWHPFTEEAIEQIKRDGITKLVV 63 (355)
Q Consensus 13 ~~t~~qa~~l~~~L~~~---~~~~~V~~amry~~P~i~~~l~~l~~~G~~~Ivv 63 (355)
.+|.+++...+++|++| |. |+.-.+++-+++..+.|.+.+-+
T Consensus 36 ~~~~~~~~~~~~~~~~~~~~~~---------~~~~~~e~yv~~Ai~~G~~~ig~ 80 (331)
T PRK06740 36 KHSMEWLVKTQERLQRRVKEGP---------YTTKWIDLYLEEALRKGIKEVGI 80 (331)
T ss_pred cchHHHHHHHHHHHHHHHhcCC---------CccchHHHHHHHHHHCCCcEEEE
Confidence 35666776666666653 43 46777999999999999998765
No 235
>PRK13371 4-hydroxy-3-methylbut-2-enyl diphosphate reductase; Provisional
Probab=21.63 E-value=3.1e+02 Score=27.83 Aligned_cols=37 Identities=16% Similarity=0.316 Sum_probs=26.3
Q ss_pred ceEEEEeeCCCchhhhc---ccC-------CchHHHHHHHHHHHHHH
Q 018479 129 QVMIFFSAHGVPLAYVE---EAG-------DPYKAEMEECVDLIMEE 165 (355)
Q Consensus 129 ~~~llfsaHgiP~~~v~---~~G-------DpY~~~~~~ta~~v~e~ 165 (355)
...|||+|||+|....+ .+| .||...++..++...++
T Consensus 110 ~~~VIIrAHGv~~~v~~~~~~rgl~iiDATCP~V~kvh~~v~~~~~~ 156 (387)
T PRK13371 110 GDVVILPAFGATVQEMQLLNEKGCHIVDTTCPWVSKVWNTVEKHKKK 156 (387)
T ss_pred CCEEEEeCCCCCHHHHHHHHHCCCeEEecCCccchHHHHHHHHHHhC
Confidence 44799999999977642 234 47887777777766653
No 236
>PF04198 Sugar-bind: Putative sugar-binding domain; InterPro: IPR007324 This probable domain is found in bacterial transcriptional regulators such as DeoR and SorC. One of these proteins, Q8U7I7 from SWISSPROT, has an N-terminal helix-turn-helix IPR000792 from INTERPRO that binds to DNA. This domain is probably the ligand regulator binding region. SorC is regulated by sorbose and other members of this family are likely to be regulated by other sugar substrates.; GO: 0030246 carbohydrate binding; PDB: 3KV1_A 3EFB_C 2W48_A 3BXH_A 3BXE_A 2OKG_A 3BXF_A 3BXG_A 2R5F_A 2O0M_A ....
Probab=21.62 E-value=1.3e+02 Score=28.35 Aligned_cols=68 Identities=18% Similarity=0.090 Sum_probs=46.0
Q ss_pred CCcHHHHHHHHHhcCCceEEEEcc-eecccchhhHHHHHHHHHHHHHhcCCc-eEEEcCCCCCCHHHHHHHH
Q 018479 190 KPYTDETIIKLGQKGVKSLLAVPI-SFVSEHIETLEEIDVEYKELALKSGIE-KWGRVPALGCEATFISDLA 259 (355)
Q Consensus 190 ~P~~~d~l~~L~~~G~k~VvVvP~-gFvsD~lETl~eid~e~~e~a~~~G~~-~~~rv~~ln~~p~fi~~La 259 (355)
+-++....+.+...-.+++.|||. |-++...+ +....-.+.+|++.|.+ .+..+|.+=+++...++|-
T Consensus 61 G~Tl~~~~~~l~~~~~~~~~vV~l~Gg~~~~~~--~~~~~i~~~lA~~~g~~~~~l~aP~~~~s~~~~~~l~ 130 (255)
T PF04198_consen 61 GRTLYAVANHLPPKSLPNVTVVPLIGGVGNSNS--YQANEIARRLAEKLGGKYYFLPAPAFVDSPELRDALL 130 (255)
T ss_dssp SHHHHHHHHTS--SSSSCEEEEESBSBTTTSSG--GSHHHHHHHHHHHHTSEEE---SBSB-SSHHHHHHHH
T ss_pred hHHHHHHHHhcCccCCCCcEEEECCCCCCCCCC--cCHHHHHHHHHHHhCCcEEEEeCCccCCCHHHHHHHH
Confidence 577777888887766788999995 66666555 45555578888888887 5667777888998877653
No 237
>cd06600 GH31_MGAM-like This family includes the following closely related glycosyl hydrolase family 31 (GH31) enzymes: maltase-glucoamylase (MGAM), sucrase-isomaltase (SI), lysosomal acid alpha-glucosidase (GAA), neutral alpha-glucosidase C (GANC), the alpha subunit of neutral alpha-glucosidase AB (GANAB), and alpha-glucosidase II. MGAM is one of the two enzymes responsible for catalyzing the last glucose-releasing step in starch digestion. SI is implicated in the digestion of dietary starch and major disaccharides such as sucrose and isomaltose, while GAA degrades glycogen in the lysosome, cleaving both alpha-1,4 and alpha-1,6 glucosidic linkages. MGAM and SI are anchored to small-intestinal brush-border epithelial cells. The absence of SI from the brush border membrane or its malfunction is associated with malabsorption disorders such as congenital sucrase-isomaltase deficiency (CSID). The domain architectures of MGAM and SI include two tandem GH31 catalytic domains, an N-terminal do
Probab=21.58 E-value=3.6e+02 Score=26.12 Aligned_cols=108 Identities=15% Similarity=0.061 Sum_probs=56.6
Q ss_pred HHHHHHHHHHHHHHhcccccCCc---eeEEEEecccCCCCCC---CcHHHHHHHHHhcCCceEEEEcceecccchhhHHH
Q 018479 152 KAEMEECVDLIMEELEKRKITNA---YTLAYQSRVGPVEWLK---PYTDETIIKLGQKGVKSLLAVPISFVSEHIETLEE 225 (355)
Q Consensus 152 ~~~~~~ta~~v~e~l~~~~~~~~---~~l~fQS~~G~~~Wl~---P~~~d~l~~L~~~G~k~VvVvP~gFvsD~lETl~e 225 (355)
++++.+.++.+.+. +++.+ .+.-|+...+.-.|=+ |+-.+.+++|.++|+|=++.+-|+.-.|.-..+++
T Consensus 23 ~~~v~~~~~~~~~~----~iP~d~i~lD~~~~~~~~~f~~d~~~FPdp~~~i~~l~~~g~k~~~~~~P~i~~~~~~~~~~ 98 (317)
T cd06600 23 QDKVVEVVDIMQKE----GFPYDVVFLDIHYMDSYRLFTWDPYRFPEPKKLIDELHKRNVKLVTIVDPGIRVDQNYSPFL 98 (317)
T ss_pred HHHHHHHHHHHHHc----CCCcceEEEChhhhCCCCceeechhcCCCHHHHHHHHHHCCCEEEEEeeccccCCCCChHHH
Confidence 55666666655543 22211 1223443333233322 88899999999999886666655554443222332
Q ss_pred HHHHHHH--H-HHhcCCceEEE------cCCCC-CCHHHHHHHHHHHHHhC
Q 018479 226 IDVEYKE--L-ALKSGIEKWGR------VPALG-CEATFISDLADAVIESL 266 (355)
Q Consensus 226 id~e~~e--~-a~~~G~~~~~r------v~~ln-~~p~fi~~La~~V~e~l 266 (355)
|..+ . .+..++..+.- ...++ .+|+..+...+.+++.+
T Consensus 99 ---~~~~~~~~v~~~~g~~~~~~~w~G~~~~~Dftnp~a~~ww~~~~~~~~ 146 (317)
T cd06600 99 ---SGMDKGKFCEIESGELFVGKMWPGTTVYPDFTNPDTREWWAGLFSEWL 146 (317)
T ss_pred ---HHHHCCEEEECCCCCeEEEeecCCCccccCCCChHHHHHHHHHHHHHh
Confidence 2221 1 11111121211 01233 78899999999888765
No 238
>PF13407 Peripla_BP_4: Periplasmic binding protein domain; PDB: 3BRS_B 3GBP_A 3GA5_A 1GCG_A 1GCA_A 3H75_A 3D02_A 3L49_B 3EJW_B 3T95_A ....
Probab=21.30 E-value=2.3e+02 Score=25.48 Aligned_cols=54 Identities=17% Similarity=0.087 Sum_probs=37.1
Q ss_pred HHHHHHHHHHHHHhccCCCceEEEee-ecCCCCHHHHHHHHHHcCCCEEEEeecCc
Q 018479 14 ISCIQAEELRKSLWEKNLPAKVYVGM-RYWHPFTEEAIEQIKRDGITKLVVLPLYP 68 (355)
Q Consensus 14 ~t~~qa~~l~~~L~~~~~~~~V~~am-ry~~P~i~~~l~~l~~~G~~~IvvlPlyP 68 (355)
+..+..+.+++.+++.+.++.+. +. .+....-.+.++++.+.|++-|++.|..|
T Consensus 12 ~~~~~~~g~~~~a~~~g~~~~~~-~~~~~d~~~q~~~i~~~i~~~~d~Iiv~~~~~ 66 (257)
T PF13407_consen 12 FWQQVIKGAKAAAKELGYEVEIV-FDAQNDPEEQIEQIEQAISQGVDGIIVSPVDP 66 (257)
T ss_dssp HHHHHHHHHHHHHHHHTCEEEEE-EESTTTHHHHHHHHHHHHHTTESEEEEESSST
T ss_pred HHHHHHHHHHHHHHHcCCEEEEe-CCCCCCHHHHHHHHHHHHHhcCCEEEecCCCH
Confidence 55566777777777666544433 34 33334444788888999999999999865
No 239
>KOG2170 consensus ATPase of the AAA+ superfamily [General function prediction only]
Probab=20.99 E-value=2.1e+02 Score=28.30 Aligned_cols=55 Identities=20% Similarity=0.354 Sum_probs=37.7
Q ss_pred EecCCCCChHHHHHHHHHHHHHHHhCCCCCceEEEEeeCCCchhhhcccCCchHHHHHHHHHHHHHHh
Q 018479 99 VIPSWYQREGYITAMANLIEKELQNFDSPEQVMIFFSAHGVPLAYVEEAGDPYKAEMEECVDLIMEEL 166 (355)
Q Consensus 99 ~i~~~~~~p~yi~a~~~~I~~~l~~~~~~~~~~llfsaHgiP~~~v~~~GDpY~~~~~~ta~~v~e~l 166 (355)
.-+..+-++...+.++..|+..+.... +.+ .|++|+||=| +.|.-|. ++.|++.+
T Consensus 80 L~~~lfGQHla~~~Vv~alk~~~~n~~-p~K-PLvLSfHG~t-----GTGKN~V------a~iiA~n~ 134 (344)
T KOG2170|consen 80 LARALFGQHLAKQLVVNALKSHWANPN-PRK-PLVLSFHGWT-----GTGKNYV------AEIIAENL 134 (344)
T ss_pred HHHHhhchHHHHHHHHHHHHHHhcCCC-CCC-CeEEEecCCC-----CCchhHH------HHHHHHHH
Confidence 334556677788888888888887543 333 5999999975 6676675 44555554
No 240
>COG2082 CobH Precorrin isomerase [Coenzyme metabolism]
Probab=20.77 E-value=5.6e+02 Score=23.73 Aligned_cols=67 Identities=21% Similarity=0.191 Sum_probs=49.3
Q ss_pred CCcHHHHHHHHHhcC-Cc--eEEEEcceecccchhhHHHHHHHHHHHHHhcCCceEEEcCCCCCCHHHHHHHHHHHHHh
Q 018479 190 KPYTDETIIKLGQKG-VK--SLLAVPISFVSEHIETLEEIDVEYKELALKSGIEKWGRVPALGCEATFISDLADAVIES 265 (355)
Q Consensus 190 ~P~~~d~l~~L~~~G-~k--~VvVvP~gFvsD~lETl~eid~e~~e~a~~~G~~~~~rv~~ln~~p~fi~~La~~V~e~ 265 (355)
-|+.-..|-+|.++| .+ -|+-+|+||+.- -|.|+...+.++..+...-..|-++--+.++..++...
T Consensus 137 APTAL~~l~elie~~~~~palvIg~PVGFv~A---------aesKe~L~~~~iP~itv~G~rGGS~vAaAivNaL~~~~ 206 (210)
T COG2082 137 APTALFELLELIEEGGIKPALVIGVPVGFVGA---------AESKEALRESPIPYITVRGRRGGSPVAAAIVNALADLA 206 (210)
T ss_pred CHHHHHHHHHHHHccCCCCcEEEEcCCcccch---------HHHHHHHHhCCCCeEEEecCCCCHHHHHHHHHHHHHHH
Confidence 599999999999885 54 355569999842 24667677788887777778888887777766666544
No 241
>cd06360 PBP1_alkylbenzenes_like Type I periplasmic binding component of active transport systems that are predicted be involved in anaerobic biodegradation of alkylbenzenes such as toluene and ethylbenzene. This group includes the type I periplasmic binding component of active transport systems that are predicted be involved in anaerobic biodegradation of alkylbenzenes such as toluene and ethylbenzene; their substrate specificity is not well characterized, however.
Probab=20.75 E-value=4.9e+02 Score=24.34 Aligned_cols=15 Identities=13% Similarity=-0.004 Sum_probs=7.5
Q ss_pred HHHHHHHHHHHhccC
Q 018479 16 CIQAEELRKSLWEKN 30 (355)
Q Consensus 16 ~~qa~~l~~~L~~~~ 30 (355)
..++..+.+.+.+.+
T Consensus 119 ~~~~~~~~~~l~~~~ 133 (336)
T cd06360 119 AQWAAPMGKYAADDG 133 (336)
T ss_pred HHHHHHHHHHHHHcC
Confidence 344555555555444
No 242
>COG0329 DapA Dihydrodipicolinate synthase/N-acetylneuraminate lyase [Amino acid transport and metabolism / Cell envelope biogenesis, outer membrane]
Probab=20.68 E-value=7.6e+02 Score=23.75 Aligned_cols=94 Identities=22% Similarity=0.294 Sum_probs=61.4
Q ss_pred HHHHHHHHHHHHHHhcccccCCceeEEEEecccCCCCCCCcHHHHHHHH---HhcCCceEEEEcceecccchhhHHHHHH
Q 018479 152 KAEMEECVDLIMEELEKRKITNAYTLAYQSRVGPVEWLKPYTDETIIKL---GQKGVKSLLAVPISFVSEHIETLEEIDV 228 (355)
Q Consensus 152 ~~~~~~ta~~v~e~l~~~~~~~~~~l~fQS~~G~~~Wl~P~~~d~l~~L---~~~G~k~VvVvP~gFvsD~lETl~eid~ 228 (355)
..|-.+..+.+.+..+.+ +.+- ...| +.+|+++++.. .+.|++.++++||.|.--.-|=+++
T Consensus 56 ~eEr~~v~~~~v~~~~gr-----vpvi--aG~g-----~~~t~eai~lak~a~~~Gad~il~v~PyY~k~~~~gl~~--- 120 (299)
T COG0329 56 LEERKEVLEAVVEAVGGR-----VPVI--AGVG-----SNSTAEAIELAKHAEKLGADGILVVPPYYNKPSQEGLYA--- 120 (299)
T ss_pred HHHHHHHHHHHHHHHCCC-----CcEE--EecC-----CCcHHHHHHHHHHHHhcCCCEEEEeCCCCcCCChHHHHH---
Confidence 556666777777776432 2222 2233 68899888764 3469999999999888888766665
Q ss_pred HHHHHHHhcCCceEEE-cC---CCCCCHHHHHHHHH
Q 018479 229 EYKELALKSGIEKWGR-VP---ALGCEATFISDLAD 260 (355)
Q Consensus 229 e~~e~a~~~G~~~~~r-v~---~ln~~p~fi~~La~ 260 (355)
-++.++++.+..-+.| +| -.+-+++.+..|++
T Consensus 121 hf~~ia~a~~lPvilYN~P~~tg~~l~~e~i~~la~ 156 (299)
T COG0329 121 HFKAIAEAVDLPVILYNIPSRTGVDLSPETIARLAE 156 (299)
T ss_pred HHHHHHHhcCCCEEEEeCccccCCCCCHHHHHHHhc
Confidence 6777777666543333 34 24566777766665
No 243
>TIGR00216 ispH_lytB (E)-4-hydroxy-3-methyl-but-2-enyl pyrophosphate reductase (IPP and DMAPP forming). Escherichia coli LytB protein had been found to regulate the activity of RelA (guanosine 3',5'-bispyrophosphate synthetase I), which in turn controls the level of a regulatory metabolite. It is involved in penicillin tolerance and the stringent response.
Probab=20.64 E-value=3.1e+02 Score=26.53 Aligned_cols=69 Identities=17% Similarity=0.234 Sum_probs=41.2
Q ss_pred eEEecCCCCChHHHHHHHHH-HHHHHHhCC-CCCceEEEEeeCCCchhhhc---ccC-------CchHHHHHHHHHHHHH
Q 018479 97 HTVIPSWYQREGYITAMANL-IEKELQNFD-SPEQVMIFFSAHGVPLAYVE---EAG-------DPYKAEMEECVDLIME 164 (355)
Q Consensus 97 ~~~i~~~~~~p~yi~a~~~~-I~~~l~~~~-~~~~~~llfsaHgiP~~~v~---~~G-------DpY~~~~~~ta~~v~e 164 (355)
+...-+.=-+|..++.+.++ |.......+ -++...|+|+|||+|....+ .+| .||...++..++...+
T Consensus 32 iy~lG~iIHN~~Vv~~L~~~Gv~~~v~~~~~v~~~~~ViirAHGv~~~~~~~~~~~gl~viDaTCP~V~kv~~~v~~~~~ 111 (280)
T TIGR00216 32 VYTLGPIVHNPQVVERLRERGVFFFLEDLDEVAAGDTVIIRAHGVPPEVREELEKKGLEVIDATCPLVTKVHNAVKKYAK 111 (280)
T ss_pred eEEecCCccCHHHHHHHHHCCCEEeecCcccCCCCCEEEEeCCCCCHHHHHHHHHCCCeEEeCCCcccHHHHHHHHHHHh
Confidence 44555666667776666554 211111111 12344799999999977542 234 4788888888877766
Q ss_pred H
Q 018479 165 E 165 (355)
Q Consensus 165 ~ 165 (355)
+
T Consensus 112 ~ 112 (280)
T TIGR00216 112 E 112 (280)
T ss_pred C
Confidence 4
No 244
>cd00860 ThrRS_anticodon ThrRS Threonyl-anticodon binding domain. ThrRS belongs to class II aminoacyl-tRNA synthetases (aaRS). This alignment contains the anticodon binding domain, which is responsible for specificity in tRNA-binding, so that the activated amino acid is transferred to a ribose 3' OH group of the appropriate tRNA only.
Probab=20.61 E-value=3.6e+02 Score=19.96 Aligned_cols=49 Identities=18% Similarity=0.137 Sum_probs=35.7
Q ss_pred HHHHHHHHHHHHHHhccCCCceEEEeeecCCCCHHHHHHHHHHcCCCEEEEee
Q 018479 13 IISCIQAEELRKSLWEKNLPAKVYVGMRYWHPFTEEAIEQIKRDGITKLVVLP 65 (355)
Q Consensus 13 ~~t~~qa~~l~~~L~~~~~~~~V~~amry~~P~i~~~l~~l~~~G~~~IvvlP 65 (355)
.....++..+.+.|+..|. .|.+ -+...++...++.....|+.-++++-
T Consensus 11 ~~~~~~a~~~~~~Lr~~g~--~v~~--d~~~~~~~~~~~~a~~~g~~~~iiig 59 (91)
T cd00860 11 DEHLDYAKEVAKKLSDAGI--RVEV--DLRNEKLGKKIREAQLQKIPYILVVG 59 (91)
T ss_pred chHHHHHHHHHHHHHHCCC--EEEE--ECCCCCHHHHHHHHHHcCCCEEEEEC
Confidence 4456677888888876664 3433 33467999999999999999887765
No 245
>TIGR02313 HpaI-NOT-DapA 2,4-dihydroxyhept-2-ene-1,7-dioic acid aldolase. This model represents a subset of the DapA (dihydrodipicolinate synthase) family which has apparently evolved a separate function. The product of DapA, dihydrodipicolinate, results from the non-enzymatic cyclization and dehydration of 6-amino-2,4-dihydroxyhept-2-ene-1,7-dioic acid, which is different from the substrate of this reaction only in the presence of the amino group. In the absence of this amino group, and running the reaction in the opposite direction, the reaction corresponds to the HpaI aldolase component of the 4-hydroxyphenylacetic acid catabolism pathway (see TIGR02311). At present, this variant of DapA is found only in Oceanobacillus iheyensis HTE831 and Thermus thermophilus HB27. In both of these cases, one or more other DapA genes can be found and the one identified by this model is part of an operon for 4-hydroxyphenylacetic acid catabolism.
Probab=20.46 E-value=7.5e+02 Score=23.59 Aligned_cols=68 Identities=15% Similarity=0.156 Sum_probs=41.0
Q ss_pred CCcHHHHHHH---HHhcCCceEEEEcceecccchhhHHHHHHHHHHHHHhc-CCceEEE-cCC---CCCCHHHHHHHHH
Q 018479 190 KPYTDETIIK---LGQKGVKSLLAVPISFVSEHIETLEEIDVEYKELALKS-GIEKWGR-VPA---LGCEATFISDLAD 260 (355)
Q Consensus 190 ~P~~~d~l~~---L~~~G~k~VvVvP~gFvsD~lETl~eid~e~~e~a~~~-G~~~~~r-v~~---ln~~p~fi~~La~ 260 (355)
..+++++++. ..+.|++.|+++||.|+.-+-+-+++ -++.+++.. +..-+.| +|. .+-+++++..|++
T Consensus 78 ~~~t~~ai~~a~~A~~~Gad~v~v~pP~y~~~~~~~l~~---~f~~ia~a~~~lpv~iYn~P~~tg~~l~~~~l~~L~~ 153 (294)
T TIGR02313 78 ALNHDETLELTKFAEEAGADAAMVIVPYYNKPNQEALYD---HFAEVADAVPDFPIIIYNIPGRAAQEIAPKTMARLRK 153 (294)
T ss_pred cchHHHHHHHHHHHHHcCCCEEEEcCccCCCCCHHHHHH---HHHHHHHhccCCCEEEEeCchhcCcCCCHHHHHHHHh
Confidence 4788887664 34559999999998776644344443 567777765 4543333 232 2345666555543
No 246
>TIGR02650 RNase_Z_T_toga ribonuclease Z, Thermotoga type. Members of this protein family are ribonuclease Z as found in the genus Thermotoga, where the enzyme cleaves after the CCA, in contrast to the activities characterized for other enzymes also designated ribonuclease Z. In other systems, cleavage occurs 5-prime to the location of the CCA sequence, and CCA is added subsequently. A species may lack ribonuclease Z if all tRNA genes encode the CCA sequence, or if the CCA is exposed by exonuclease activity rather than endonuclease activity. Note that members of this sequence family differ considerably from the majority of RNase Z sequences.
Probab=20.33 E-value=2.5e+02 Score=27.11 Aligned_cols=30 Identities=17% Similarity=0.206 Sum_probs=20.5
Q ss_pred cCCCCHHHHHHHHHHcCCCEEEEeecCccc
Q 018479 41 YWHPFTEEAIEQIKRDGITKLVVLPLYPQF 70 (355)
Q Consensus 41 y~~P~i~~~l~~l~~~G~~~IvvlPlyPqy 70 (355)
+++-+..++.+...+.+++++++.-.+|.|
T Consensus 219 ~gH~t~~eaa~~A~~a~vk~LiLtH~Ssry 248 (277)
T TIGR02650 219 KKHAAADDEMEESKKAAGKKKIILHHISRR 248 (277)
T ss_pred CCCCCHHHHHHHHHHcCCCEEEEEeecccc
Confidence 456667777776777777777777666654
No 247
>PRK05904 coproporphyrinogen III oxidase; Provisional
Probab=20.30 E-value=2.5e+02 Score=27.84 Aligned_cols=58 Identities=7% Similarity=-0.048 Sum_probs=0.0
Q ss_pred ccCCCchhHHHHHHHHHHHHHHhccCCCceEEEeeecCCCCHHHHHHHHHHcCCCEEEE
Q 018479 5 FVLVLSLAIISCIQAEELRKSLWEKNLPAKVYVGMRYWHPFTEEAIEQIKRDGITKLVV 63 (355)
Q Consensus 5 igggSPL~~~t~~qa~~l~~~L~~~~~~~~V~~amry~~P~i~~~l~~l~~~G~~~Ivv 63 (355)
||||+|..--.+++.+.+...-..-..+..+.+-. +-...-.+.++.|++.|+.+|-+
T Consensus 62 ~GGGTPs~L~~~~l~~ll~~i~~~~~~~~eitiE~-nP~~lt~e~l~~lk~~G~nrisi 119 (353)
T PRK05904 62 LGGGTPNCLNDQLLDILLSTIKPYVDNNCEFTIEC-NPELITQSQINLLKKNKVNRISL 119 (353)
T ss_pred ECCCccccCCHHHHHHHHHHHHHhcCCCCeEEEEe-ccCcCCHHHHHHHHHcCCCEEEE
No 248
>COG0474 MgtA Cation transport ATPase [Inorganic ion transport and metabolism]
Probab=20.18 E-value=1.4e+02 Score=33.61 Aligned_cols=52 Identities=25% Similarity=0.363 Sum_probs=34.6
Q ss_pred eEEEEecccCCCCCCCcHHHHHHHHHhcCCceEEEEcceecccchhhHHHHHHHHHHHHHhcCC
Q 018479 176 TLAYQSRVGPVEWLKPYTDETIIKLGQKGVKSLLAVPISFVSEHIETLEEIDVEYKELALKSGI 239 (355)
Q Consensus 176 ~l~fQS~~G~~~Wl~P~~~d~l~~L~~~G~k~VvVvP~gFvsD~lETl~eid~e~~e~a~~~G~ 239 (355)
.+.|..-.|-..=+.|++.+++++|.+.|+|-+++ +.||.+| ++.+|+++|+
T Consensus 535 dl~~lGl~g~~Dppr~~v~~aI~~l~~AGI~v~Mi-----TGD~~~T-------A~aIa~~~Gi 586 (917)
T COG0474 535 DLVFLGLTGIEDPPREDVKEAIEELREAGIKVWMI-----TGDHVET-------AIAIAKECGI 586 (917)
T ss_pred cceeehhhhccCCCCccHHHHHHHHHHCCCcEEEE-----CCCCHHH-------HHHHHHHcCC
Confidence 35555433422225799999999999999865543 6788887 4455555553
Done!