BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 018481
(355 letters)
Database: swissprot
539,616 sequences; 191,569,459 total letters
Searching..................................................done
>sp|Q54UB1|TRM6_DICDI tRNA (adenine(58)-N(1))-methyltransferase non-catalytic subunit
trm6 OS=Dictyostelium discoideum GN=trmt6 PE=3 SV=1
Length = 521
Score = 150 bits (379), Expect = 1e-35, Method: Compositional matrix adjust.
Identities = 95/245 (38%), Positives = 146/245 (59%), Gaps = 4/245 (1%)
Query: 19 EGCSVLLDINDGDRLVFARLTSGSTLKIGNKNCSLQPLIGCPFGSLFQVDNGKEGPNLSR 78
EG V+LDIN+G++ ++ GS +KIG K + +IG + S FQV N K L R
Sbjct: 37 EGDHVILDINNGEKFSVIKVKLGSKVKIGKKQILINSIIGESYYSSFQVSNEKN--TLER 94
Query: 79 VIPSTEDDVQEKEDAQISGEFRDNRAIVDDNKAQCLSGEDIDEMRRQGATGEEIVEALIA 138
+ DD + +++ DNR + +N AQ L+ EDI+EM+++G I++ ++
Sbjct: 95 ITQKEIDD-RLNNLVELNQNDADNRNLDQNNTAQKLTQEDINEMKQKGTDSNTIIKTIVE 153
Query: 139 NSATFEKKTSFSQEKYKLKKQKKYAPKVLLRRPFARSICEAYFKKNPARIGFLRVDMLSL 198
NS +F+ KTSFSQ KY KK KKY+ V + +P +S+ EAY+KK+ +I LR D
Sbjct: 154 NSESFKTKTSFSQIKYLKKKIKKYSTIVKIIKPTLKSLTEAYYKKDSRKICGLRFDSFGQ 213
Query: 199 LLSMGNVAANSDVLVVDMAGGLLTGAVAERLGGTGYVCNTCIGDSLYPMDIVRIFNFSNE 258
LL++GN+ ANS VLVV+ GL+TG++AER+ G G + + IG + IV F F+ +
Sbjct: 214 LLTLGNIRANSQVLVVETCMGLVTGSIAERMNGQGTILSAYIGKG-PSLSIVNNFGFNTD 272
Query: 259 ICKSI 263
+ +I
Sbjct: 273 VLNTI 277
>sp|Q2T9V5|TRM6_BOVIN tRNA (adenine(58)-N(1))-methyltransferase non-catalytic subunit
TRM6 OS=Bos taurus GN=TRMT6 PE=2 SV=1
Length = 497
Score = 114 bits (286), Expect = 9e-25, Method: Compositional matrix adjust.
Identities = 78/229 (34%), Positives = 123/229 (53%), Gaps = 25/229 (10%)
Query: 27 INDGDRLVFARLTSGSTLKIGNKN--------CSLQPLIGCPFGSLFQVDNGKE-GPNLS 77
I DGD +V R +++ + L +IG +G+ F+V NG P
Sbjct: 20 IRDGDFVVLKREDVFKAVQVQRRKKVTFEKQWFYLDNIIGHSYGTTFEVTNGGSLQPKKK 79
Query: 78 RVIPSTEDDVQEKEDAQISGEFRDNRAIVDDNKAQCLSGEDIDEMRRQGATGEEIVEALI 137
+ P++E KE DNR I+DD K+Q L+ +DI ++ +G GEEIV+ LI
Sbjct: 80 KEEPTSET----KEAGT------DNRNIIDDGKSQKLTQDDIKALKDKGIKGEEIVQQLI 129
Query: 138 ANSATFEKKTSFSQEKYKLKKQKKYAPKVLLRRPFARSICEAYFKKNPARIGFLRVDMLS 197
NS TF KT F+Q+KY KK+KKY + + +P R + Y+ + P +I +R D L+
Sbjct: 130 ENSTTFRDKTEFAQDKYIKKKKKKYEAMITVVKPSTRILSVMYYAREPGKINHMRYDTLA 189
Query: 198 LLLSMGNVAANSDVLVVDMAGGLLTGAVAERLGGTGYVCNTCIGDSLYP 246
+L++GN+ A + ++V++ GL+ GA+ ER+GG G + LYP
Sbjct: 190 QMLTLGNIRAGNKMIVMETCAGLVLGAMMERMGGFGSIIQ------LYP 232
>sp|Q9UJA5|TRM6_HUMAN tRNA (adenine(58)-N(1))-methyltransferase non-catalytic subunit
TRM6 OS=Homo sapiens GN=TRMT6 PE=1 SV=1
Length = 497
Score = 112 bits (281), Expect = 4e-24, Method: Compositional matrix adjust.
Identities = 79/229 (34%), Positives = 122/229 (53%), Gaps = 25/229 (10%)
Query: 27 INDGDRLVFARLTSGSTLKIGNKN--------CSLQPLIGCPFGSLFQVDNGKE-GPNLS 77
I DGD +V R +++ + L +IG +G+ F+V +G P
Sbjct: 20 IRDGDFVVLKREDVFKAVQVQRRKKVTFEKQWFYLDNVIGHSYGTAFEVTSGGSLQPKKK 79
Query: 78 RVIPSTEDDVQEKEDAQISGEFRDNRAIVDDNKAQCLSGEDIDEMRRQGATGEEIVEALI 137
R P+ E KE DNR IVDD K+Q L+ +DI ++ +G GEEIV+ LI
Sbjct: 80 REEPTAET----KEAGT------DNRNIVDDGKSQKLTQDDIKALKDKGIKGEEIVQQLI 129
Query: 138 ANSATFEKKTSFSQEKYKLKKQKKYAPKVLLRRPFARSICEAYFKKNPARIGFLRVDMLS 197
NS TF KT F+Q+KY KK+KKY + + +P R + Y+ + P +I +R D L+
Sbjct: 130 ENSTTFRDKTEFAQDKYIKKKKKKYEAIITVVKPSTRILSIMYYAREPGKINHMRYDTLA 189
Query: 198 LLLSMGNVAANSDVLVVDMAGGLLTGAVAERLGGTGYVCNTCIGDSLYP 246
+L++GN+ A + ++V++ GL+ GA+ ER+GG G + LYP
Sbjct: 190 QMLTLGNIRAGNKMIVMETCAGLVLGAMMERMGGFGSIIQ------LYP 232
>sp|Q8CE96|TRM6_MOUSE tRNA (adenine(58)-N(1))-methyltransferase non-catalytic subunit
TRM6 OS=Mus musculus GN=Trmt6 PE=1 SV=1
Length = 497
Score = 112 bits (279), Expect = 6e-24, Method: Compositional matrix adjust.
Identities = 77/224 (34%), Positives = 121/224 (54%), Gaps = 17/224 (7%)
Query: 27 INDGDRLVFARLTSGSTLKIGNKN--------CSLQPLIGCPFGSLFQVDNGKEGPNLSR 78
I+DGD +V R +++ + L IG +GS F V +G +
Sbjct: 21 IHDGDFVVLKREDVFKAVQVQRRKKVTFEKQWFYLDNAIGHSYGSAFDVSSGGS----LQ 76
Query: 79 VIPSTEDDVQEKEDAQISGEFRDNRAIVDDNKAQCLSGEDIDEMRRQGATGEEIVEALIA 138
+ E+ E ++A DNR IVDD K+Q L+ +DI ++ +G GEEIV+ LI
Sbjct: 77 LRKKLEEPASETKEAGT-----DNRNIVDDGKSQKLTQDDIKALKDKGIKGEEIVQQLIE 131
Query: 139 NSATFEKKTSFSQEKYKLKKQKKYAPKVLLRRPFARSICEAYFKKNPARIGFLRVDMLSL 198
NS TF KT F+Q+KY KK+KKY V + +P R + Y+ + P +I +R D L+
Sbjct: 132 NSTTFRDKTEFAQDKYIKKKKKKYEAIVTILKPSTRILSIMYYAREPGKINHMRYDTLAQ 191
Query: 199 LLSMGNVAANSDVLVVDMAGGLLTGAVAERLGGTGYVCNTCIGD 242
+L++GN+ A + ++V++ GL+ GA+ ER+GG G + GD
Sbjct: 192 MLTLGNIRAGNKMIVMETCSGLVLGAMMERMGGFGSIIQLYPGD 235
>sp|P0CS06|TRM6_CRYNJ tRNA (adenine(58)-N(1))-methyltransferase non-catalytic subunit
TRM6 OS=Cryptococcus neoformans var. neoformans serotype
D (strain JEC21 / ATCC MYA-565) GN=TRM6 PE=3 SV=1
Length = 560
Score = 103 bits (256), Expect = 3e-21, Method: Compositional matrix adjust.
Identities = 78/250 (31%), Positives = 120/250 (48%), Gaps = 12/250 (4%)
Query: 92 DAQISGEFRDNRAIVD--DNKAQCLSGEDIDEMRRQGATGEEIVEALIANSATFEKKTSF 149
DA I N I D + + LS ++I E+R QG T EEI++A IA F KT F
Sbjct: 188 DAVIDDIVETNEFIEDLSETEKTTLSHDEIAELRAQGCTPEEIIQAQIARHEKFGLKTDF 247
Query: 150 SQEKYKLKKQKKYAPKVLLRRPFARSICEAYFKKN---PARIGFLRVDMLSLLLSMGNVA 206
S+EK++ +K+KK+ V +P A SI + N P I LR D LS LL+M NV
Sbjct: 248 SKEKWRRRKEKKFYQTV---QPLAPSIPNVLYHYNLRSPQSILHLRDDTLSQLLTMANVR 304
Query: 207 ANSDVLVVDMAGGLLTGAVAERLGGTGYVCNTCIGDSLYPMDIVRIFNFSNEICKSIVRA 266
LVVD GGL+T AV ER+G G + DS I++ NFS+ + I
Sbjct: 305 PGGRYLVVDDTGGLITAAVLERMGSEGSILLFNESDSPPAWGILQTMNFSDRELEPIKWL 364
Query: 267 SVSDVTSQSETSEQSDQLESACNMEIQSNEQKSSSVSMEDISLSSEN----GVSDLILEA 322
+ + + + Q E N + +Q+ + + +++ + G LIL
Sbjct: 365 NWLEAEEEYQKPAPPVQAEPPTNPIKAAAKQRKYAAQVAELNNTRNELHLGGWDGLILAT 424
Query: 323 NHSPVNKISK 332
+P++ +++
Sbjct: 425 TLNPISVVAR 434
>sp|P0CS07|TRM6_CRYNB tRNA (adenine(58)-N(1))-methyltransferase non-catalytic subunit
TRM6 OS=Cryptococcus neoformans var. neoformans serotype
D (strain B-3501A) GN=TRM6 PE=3 SV=1
Length = 560
Score = 103 bits (256), Expect = 3e-21, Method: Compositional matrix adjust.
Identities = 78/250 (31%), Positives = 120/250 (48%), Gaps = 12/250 (4%)
Query: 92 DAQISGEFRDNRAIVD--DNKAQCLSGEDIDEMRRQGATGEEIVEALIANSATFEKKTSF 149
DA I N I D + + LS ++I E+R QG T EEI++A IA F KT F
Sbjct: 188 DAVIDDIVETNEFIEDLSETEKTTLSHDEIAELRAQGCTPEEIIQAQIARHEKFGLKTDF 247
Query: 150 SQEKYKLKKQKKYAPKVLLRRPFARSICEAYFKKN---PARIGFLRVDMLSLLLSMGNVA 206
S+EK++ +K+KK+ V +P A SI + N P I LR D LS LL+M NV
Sbjct: 248 SKEKWRRRKEKKFYQTV---QPLAPSIPNVLYHYNLRSPQSILHLRDDTLSQLLTMANVR 304
Query: 207 ANSDVLVVDMAGGLLTGAVAERLGGTGYVCNTCIGDSLYPMDIVRIFNFSNEICKSIVRA 266
LVVD GGL+T AV ER+G G + DS I++ NFS+ + I
Sbjct: 305 PGGRYLVVDDTGGLITAAVLERMGSEGSILLFNESDSPPAWGILQTMNFSDRELEPIKWL 364
Query: 267 SVSDVTSQSETSEQSDQLESACNMEIQSNEQKSSSVSMEDISLSSEN----GVSDLILEA 322
+ + + + Q E N + +Q+ + + +++ + G LIL
Sbjct: 365 NWLEAEEEYQKPAPPVQAEPPTNPIKAAAKQRKYAAQVAELNNTRNELHLGGWDGLILAT 424
Query: 323 NHSPVNKISK 332
+P++ +++
Sbjct: 425 TLNPISVVAR 434
>sp|Q6CF35|TRM6_YARLI tRNA (adenine(58)-N(1))-methyltransferase non-catalytic subunit
TRM6 OS=Yarrowia lipolytica (strain CLIB 122 / E 150)
GN=TRM6 PE=3 SV=1
Length = 487
Score = 101 bits (252), Expect = 8e-21, Method: Compositional matrix adjust.
Identities = 73/243 (30%), Positives = 130/243 (53%), Gaps = 25/243 (10%)
Query: 36 ARLTSGSTLKIGNKNCSLQ--PLIGCPFGSLFQVDNGKEGPNLSRVIPSTEDD---VQEK 90
+L T+ IG K S Q ++G P+G F++ K R+I DD V
Sbjct: 55 VKLIPNQTISIG-KFGSFQVNDILGLPYGYTFEIQEDKR----LRIIQEGVDDHDYVVGA 109
Query: 91 EDAQISGEFRDNRAIVDDNKAQCLSGEDIDEMRRQGA-TGEEIVEALIANSATFEKKTSF 149
+ A + E N+ ++D +++Q LS +I+EM++Q +G++I++ +I F KKT+F
Sbjct: 110 KGALLEPE-ETNQTLIDTSESQTLSMAEIEEMKKQKTLSGKDIIDHVIKGHNEFHKKTAF 168
Query: 150 SQEKYKLKKQKKYAPKVLLRRPFARSICEA-----YFKKNPARIGFLRVDMLSLLLSMGN 204
S+EKY +K++KY LRR + +C + Y +K+ ++ + +ML+LLLSM N
Sbjct: 169 SKEKYLRRKEQKY-----LRRFTPQPMCSSLLLDFYLEKDYKKVLDMSQEMLALLLSMAN 223
Query: 205 VAANSDVLVVDMAGGLLTGAVAERLGGTGYVCNTCIGDSLYP-MDIVRIFNFSNEICKSI 263
V LVVD G+LT A+ ER+ G G + ++ +P +D ++ + E+ +
Sbjct: 224 VRPGGKYLVVDETTGVLTAALMERMAGEGLIV--VAHENEHPNLDALKYLSMPTELQDRM 281
Query: 264 VRA 266
+++
Sbjct: 282 IKS 284
>sp|Q6BKK7|TRM6_DEBHA tRNA (adenine(58)-N(1))-methyltransferase non-catalytic subunit
TRM6 OS=Debaryomyces hansenii (strain ATCC 36239 / CBS
767 / JCM 1990 / NBRC 0083 / IGC 2968) GN=TRM6 PE=3 SV=2
Length = 473
Score = 92.8 bits (229), Expect = 3e-18, Method: Compositional matrix adjust.
Identities = 68/244 (27%), Positives = 127/244 (52%), Gaps = 17/244 (6%)
Query: 38 LTSGSTLKIGN-KNCSLQPLIGCPFGSLFQV-DNGKEGPNLSRVIPSTEDDVQE------ 89
L G + +G ++ ++G PFG F++ + K P S + + E V
Sbjct: 50 LKPGGIISLGKFGTFAVDGILGYPFGQTFEILEELKVKPIKSMTMQADETSVDNENEELT 109
Query: 90 KED--AQISGEFRDNRAIVD-DNKAQCLSGEDIDEMRRQGAT---GEEIVEALIANSATF 143
K+D +S +N+ I++ +K Q L+ ED+D+++ GAT G+ I+E +IA F
Sbjct: 110 KDDLTKMLSNSSDNNQNIINIGSKIQKLTSEDVDKLKESGATSDIGQRIIEQMIAGHEGF 169
Query: 144 EKKTSFSQEKYKLKKQKKYAPKVLLRRPFARSICEAYFKKNPARIGFLRVDMLSLLLSMG 203
+KKT FSQ+KY +KQ+K+ + + + + + Y +K+ R+ + + L LLL+
Sbjct: 170 DKKTLFSQQKYLKRKQQKFLRRFTVEYLGSSQLLQYYIEKDTQRVLDMSEETLGLLLNYA 229
Query: 204 NVAANSDVLVVDMAGGLLTGAVAERLGGTGYVCNTCIGDSLYPMDI-VRIFNFSNEICKS 262
NV L++D GG++ A+ ER+ G G + + D+ +P I +R ++ E+
Sbjct: 230 NVRPGGKYLLIDETGGIILYAMMERMNGQGTIVSAH--DNEHPNHIALRYSDYPEEMQNR 287
Query: 263 IVRA 266
+V++
Sbjct: 288 MVKS 291
>sp|Q5A6Q4|TRM6_CANAL tRNA (adenine(58)-N(1))-methyltransferase non-catalytic subunit
TRM6 OS=Candida albicans (strain SC5314 / ATCC MYA-2876)
GN=TRM6 PE=3 SV=1
Length = 453
Score = 92.4 bits (228), Expect = 5e-18, Method: Compositional matrix adjust.
Identities = 60/191 (31%), Positives = 112/191 (58%), Gaps = 9/191 (4%)
Query: 56 LIGCPFGSLFQV-DNGKEGP--NLSRV-IPSTEDDVQEKEDAQI-SGEFRDNRAIVD-DN 109
++G P G+ F++ ++ K P ++S + + +++ VQ +E ++ S +N+ I++ +
Sbjct: 50 ILGYPLGTSFEIIEDHKVKPIKSISTLDLTDSDETVQRQELTKMFSDSAENNQNIINIGS 109
Query: 110 KAQCLSGEDIDEMRRQGAT---GEEIVEALIANSATFEKKTSFSQEKYKLKKQKKYAPKV 166
K Q LS +DIDE+++ GA+ G+ I+E +IA F+KKT FSQ+KY +KQ+K+ +
Sbjct: 110 KIQKLSKDDIDELKKSGASSNVGQMIIEKMIAGHEGFDKKTIFSQQKYLKRKQQKFLRRF 169
Query: 167 LLRRPFARSICEAYFKKNPARIGFLRVDMLSLLLSMGNVAANSDVLVVDMAGGLLTGAVA 226
+ + + Y +K+ R+ L V+ L L+L+ NV L++D GG+LT A+
Sbjct: 170 TVDYLGGSELLQYYIEKDLNRVLDLSVETLGLMLTYSNVRPGGKYLIIDETGGVLTYAMM 229
Query: 227 ERLGGTGYVCN 237
ER+ G + +
Sbjct: 230 ERMNCEGTIVS 240
>sp|Q9HGL4|TRM6_SCHPO tRNA (adenine(58)-N(1))-methyltransferase non-catalytic subunit
trm6 OS=Schizosaccharomyces pombe (strain 972 / ATCC
24843) GN=gcd10 PE=3 SV=1
Length = 462
Score = 91.3 bits (225), Expect = 1e-17, Method: Compositional matrix adjust.
Identities = 66/226 (29%), Positives = 109/226 (48%), Gaps = 17/226 (7%)
Query: 11 IRNAQLTWEGCSVLLDINDGDRLVFARLTSGSTLKIGNKNCSL-QPLIGCPFGSLFQVDN 69
+R+A E SV + + D + F L +T+ +G L L G F F++
Sbjct: 2 LRHASTISENSSVFIKL-PSDNVRFVTLKPNNTIHLGKFGSFLADDLFGKHFDETFEIYQ 60
Query: 70 GKEGPNLSRVIPSTEDDVQEKEDAQISGEFRDNRAIVDDNKAQCLSGEDIDEMRRQ---- 125
P RV+ + +E I E + N+ + D Q ++ E+IDE+R
Sbjct: 61 ----PKKIRVLKT-------REVQYIEEEKKTNQELNDCRGNQLMTQEEIDELRANIKAG 109
Query: 126 GATGEEIVEALIANSATFEKKTSFSQEKYKLKKQKKYAPKVLLRRPFARSICEAYFKKNP 185
G EE ++ L +S TFE+KT F+QEKY +K +KY + + RP + + +P
Sbjct: 110 GLRAEEAIKQLTNSSKTFEQKTLFAQEKYVTRKGEKYLQRFQVLRPCVEVVANYMIEHDP 169
Query: 186 ARIGFLRVDMLSLLLSMGNVAANSDVLVVDMAGGLLTGAVAERLGG 231
+I L + +SL+L++GNV LVVD G + G++ +R+ G
Sbjct: 170 YKILDLTAECISLMLTLGNVKPGGRYLVVDETGCMFLGSLIDRVAG 215
>sp|Q2UJ66|TRM6_ASPOR tRNA (adenine(58)-N(1))-methyltransferase non-catalytic subunit
trm6 OS=Aspergillus oryzae (strain ATCC 42149 / RIB 40)
GN=trm6 PE=3 SV=1
Length = 578
Score = 89.0 bits (219), Expect = 5e-17, Method: Compositional matrix adjust.
Identities = 69/206 (33%), Positives = 104/206 (50%), Gaps = 33/206 (16%)
Query: 56 LIGCPFGSLFQV---DNGKEGPNLSRVIPSTE-----------DDVQEKEDAQISGEFRD 101
+IG PF F++ + K+G L R+IP+ E D +E + + R
Sbjct: 44 IIGRPFYLTFEILDDADEKDGSCL-RIIPAAELHAETLIAEGEGDGEELDTNEDGTPMRT 102
Query: 102 NRAIVDDNKAQCLSGEDIDEMRRQ-GATGEEIVEALIANSATFEKKTSFSQEKYKLKKQK 160
NR IVDD Q L+ E+I+ ++++ G G EI+ L+ + T ++KTSFS KY L+K++
Sbjct: 103 NREIVDDASTQKLTWEEIEALKKESGGAGREIISKLLESHQTLDQKTSFSLAKYMLRKRR 162
Query: 161 KYAPKVLLRRPFARSICEAYFKKN--PARIGFLRVDMLSLLLSMGNVAANSDV------- 211
KY + + P SI + ++ ARI LR +M+ LL GNV D
Sbjct: 163 KYMKRFTV-LPLDVSILTNHMMEDQGAARIMELRDEMVGLLGCWGNVHHGGDASLDEAIA 221
Query: 212 -------LVVDMAGGLLTGAVAERLG 230
LVVD GGL+ A+AER+G
Sbjct: 222 AKPNGRYLVVDDTGGLVVAAMAERMG 247
>sp|Q4WE58|TRM6_ASPFU tRNA (adenine(58)-N(1))-methyltransferase non-catalytic subunit
trm6 OS=Neosartorya fumigata (strain ATCC MYA-4609 /
Af293 / CBS 101355 / FGSC A1100) GN=trm6 PE=3 SV=1
Length = 572
Score = 79.3 bits (194), Expect = 4e-14, Method: Compositional matrix adjust.
Identities = 61/205 (29%), Positives = 100/205 (48%), Gaps = 31/205 (15%)
Query: 56 LIGCPFGSLFQVDN--GKEGPNLSRVIPSTE--------DDVQEKEDAQISGE---FRDN 102
+IG PF F++ + G+ N R++P E D E +D +++ E R N
Sbjct: 44 IIGRPFYLTFEIIDVSGENNDNCLRIVPPAELHAETLIADGEGEGDDVEVNEEGIPIRTN 103
Query: 103 RAIVDDNKAQCLSGEDIDEMRR-QGATGEEIVEALIANSATFEKKTSFSQEKYKLKKQKK 161
R IVDD Q ++ E+I+ +++ G EI+E L+ + + ++KT+FS KY L+K+KK
Sbjct: 104 REIVDDASTQKMTAEEIEALKKVSTGAGREIIEKLLESHSALDQKTAFSLAKYTLRKRKK 163
Query: 162 YAPKVLLRRPFARSICEAYF--KKNPARIGFLRVDMLSLLLSMGNVA------------- 206
+ + + P S+ Y K + LR + + L+ GNV
Sbjct: 164 FLKRFTV-LPVDVSLLTNYMLEGKEAMKTMELRDESIGLIGCWGNVHHGGQSSFEGAVAS 222
Query: 207 -ANSDVLVVDMAGGLLTGAVAERLG 230
N LV+D GGL+ A+AER+G
Sbjct: 223 KPNGRYLVIDETGGLVVAAMAERMG 247
>sp|Q75B32|TRM6_ASHGO tRNA (adenine(58)-N(1))-methyltransferase non-catalytic subunit
TRM6 OS=Ashbya gossypii (strain ATCC 10895 / CBS 109.51
/ FGSC 9923 / NRRL Y-1056) GN=TRM6 PE=3 SV=1
Length = 459
Score = 73.9 bits (180), Expect = 2e-12, Method: Compositional matrix adjust.
Identities = 86/354 (24%), Positives = 156/354 (44%), Gaps = 50/354 (14%)
Query: 8 LDPIRNAQLTWEGCSVLLDINDGDRLVFARLTSGSTLKIGNKN-CSLQPLIGCPFGSLFQ 66
+DP+R L +L+ + D L L + +G C + +IG P G+ F+
Sbjct: 1 MDPLRQLVLNQH---ILVRL-PSDNLKIVELKPNGVISLGKFGACHVNDIIGYPLGTTFE 56
Query: 67 V---DNGKEGPNLSRVIPSTEDDVQEKEDAQISGE--------------FRDNRAIVD-D 108
+ + E S V+ ++ + +AQ+ E + N ++D
Sbjct: 57 IWYEGDETEVVRGSTVVIGKVRVLENRAEAQVGSEGATPQPAELTQVESSKTNMELLDLG 116
Query: 109 NKAQCLSGEDIDEMRRQGATGEEIVEALIANSATFEKKTSFSQEKYKLKKQKKYAPKVLL 168
+K Q L ++I+ M++ G+ I+ +I + TF KKT SQEKY +K++K+A K
Sbjct: 117 HKVQKLDHKEIERMKQDVTAGDSIISMMIQSHETFHKKTIHSQEKYLKRKKQKFA-KFFT 175
Query: 169 RRPFARSICEAYF--KKNPARIGFLRVDMLSLLLSMGNVAANSDVLVVDMAGGLLTGAVA 226
S Y K + RI L + L + L++ N+ +N L +D GGL+ A+
Sbjct: 176 AEYLGSSGLLRYLIEKGDMQRIMDLSEESLGMALNLANIRSNGTYLCMDETGGLIVYAML 235
Query: 227 ERL--------GGTGYVCNTCIGDSLYP-MDIVRIFNFSNEI----CKSIVRASVSDVTS 273
ER+ GGT V + ++ +P +D+++ N+S E K++ + +
Sbjct: 236 ERMFGGHEAQHGGTIVVVH----ENEHPNLDLLKFSNYSEEFIGKHVKTVSLLQYFEPPT 291
Query: 274 QSETSEQSDQLESACNMEIQSNEQ-------KSSSVSMEDISLSSENGVSDLIL 320
E L+ A E++SN++ K + +E I L+S+ LI+
Sbjct: 292 VEEVEASFTPLDDAQLREMKSNKKGAYYRRLKRYNSDLEVIRLASQITYDALIV 345
>sp|Q6FNP9|TRM6_CANGA tRNA (adenine(58)-N(1))-methyltransferase non-catalytic subunit
TRM6 OS=Candida glabrata (strain ATCC 2001 / CBS 138 /
JCM 3761 / NBRC 0622 / NRRL Y-65) GN=TRM6 PE=3 SV=1
Length = 473
Score = 67.4 bits (163), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 63/259 (24%), Positives = 128/259 (49%), Gaps = 47/259 (18%)
Query: 56 LIGCPFGSLFQ---------VDNGKEGPNLSRV--IP----------STEDDVQEKED-- 92
++G P G+ F+ V+N K+ P + + +P +T+D +E+ +
Sbjct: 46 ILGWPLGTTFEIYYDNVEEIVENKKKKPKSNELNKVPVGKVRLYKEVATDDKAEEEVEEM 105
Query: 93 ---AQISGEFRD------NRAIVD-DNKAQCLSGEDIDEMRRQGATGEEIVEALIANSAT 142
A I E ++ N+ +++ N Q L+ D++ ++Q A+ EI+ +I + +
Sbjct: 106 DSSAVIPVELQNVLSSATNQGLINIGNDVQKLTMHDVERFKQQSASANEIITKMIESHGS 165
Query: 143 FEKKTSFSQEKYKLKKQKKYAPKVLLRRPFARSICEAYF--KKNPARIGFLRVDMLSLLL 200
F +KT +SQEKY +K++K+A K + S+ + K + R+ L + L ++L
Sbjct: 166 FHQKTIYSQEKYLKRKKQKFA-KFFTVDYLSSSMLLKFLVEKGDIQRVLDLSEESLGMIL 224
Query: 201 SMGNVAANSDVLVVDMAGGLLTGAVAERLGG-------TGYVCNTCIGDSLYP-MDIVRI 252
++ N+ ++ L +D GGL+ + ER+ G G + I ++ +P +D+++
Sbjct: 225 NLTNIRSDGTYLCMDETGGLIVYTMLERMFGGKEDLDAPGKIV--VINENEHPNLDLLKF 282
Query: 253 FNFSNE-ICKSIVRASVSD 270
N+S + I K +V S+ D
Sbjct: 283 SNYSEKFIEKHVVTLSILD 301
>sp|P41814|TRM6_YEAST tRNA (adenine(58)-N(1))-methyltransferase non-catalytic subunit
TRM6 OS=Saccharomyces cerevisiae (strain ATCC 204508 /
S288c) GN=GCD10 PE=1 SV=1
Length = 478
Score = 63.9 bits (154), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 35/124 (28%), Positives = 74/124 (59%), Gaps = 1/124 (0%)
Query: 109 NKAQCLSGEDIDEMRRQGATGEEIVEALIANSATFEKKTSFSQEKYKLKKQKKYAPKVLL 168
+KAQ L+ E+I++M+++ + +EI++ +I + +F KT +SQEKY +K++K+A +
Sbjct: 134 SKAQELTVEEIEKMKQESLSSKEIIDKIIKSHKSFHNKTVYSQEKYVNRKKQKFAKYFTV 193
Query: 169 RRPFARSICEAYFKK-NPARIGFLRVDMLSLLLSMGNVAANSDVLVVDMAGGLLTGAVAE 227
+ ++ + K + R+ + + + +LL++ N+ + + L +D GGLL + E
Sbjct: 194 EYLSSSNLLQFLIDKGDIQRVLDMSQESMGMLLNLANIQSEGNYLCMDETGGLLVYFLLE 253
Query: 228 RLGG 231
R+ G
Sbjct: 254 RMFG 257
>sp|Q6CLF6|TRM6_KLULA tRNA (adenine(58)-N(1))-methyltransferase non-catalytic subunit
TRM6 OS=Kluyveromyces lactis (strain ATCC 8585 / CBS
2359 / DSM 70799 / NBRC 1267 / NRRL Y-1140 / WM37)
GN=TRM6 PE=3 SV=1
Length = 476
Score = 63.2 bits (152), Expect = 3e-09, Method: Compositional matrix adjust.
Identities = 46/179 (25%), Positives = 97/179 (54%), Gaps = 9/179 (5%)
Query: 101 DNRAIVD-DNKAQCLSGEDIDEMRRQGATGEEIVEALIANSATFEKKTSFSQEKYKLKKQ 159
+NR +++ + Q +S +I+ M+R+ A+G+ I+ +I + +F +KT SQEKY +K+
Sbjct: 103 NNRGLINLGSVVQEMSMAEIEAMKREAASGDAIISKMIESHKSFHQKTVHSQEKYLKRKK 162
Query: 160 KKYAPKVLLRRPFARSICEAYFKK-NPARIGFLRVDMLSLLLSMGNVAANSDVLVVDMAG 218
+K+A + + + +K + R+ + + L + L++ N+ +N L +D G
Sbjct: 163 QKFAKFFTVEYLDSSGLLHYLIEKGDVLRVMDISQESLGMALNLANINSNGQYLCIDETG 222
Query: 219 GLLTGAVAERL--GGTGYVCN---TCIGDSLYP-MDIVRIFNFS-NEICKSIVRASVSD 270
GL+ A+ ER+ G + N + ++ +P +D+++ ++S N I + + SV D
Sbjct: 223 GLIVYAMLERMFAGDSNSKANGKIVVVHENEHPNLDLLKFSSYSDNFIQRHVKTISVLD 281
>sp|O74452|SCW1_SCHPO Cell wall integrity protein scw1 OS=Schizosaccharomyces pombe
(strain 972 / ATCC 24843) GN=scw1 PE=1 SV=1
Length = 561
Score = 35.8 bits (81), Expect = 0.47, Method: Compositional matrix adjust.
Identities = 23/74 (31%), Positives = 36/74 (48%)
Query: 257 NEICKSIVRASVSDVTSQSETSEQSDQLESACNMEIQSNEQKSSSVSMEDISLSSENGVS 316
NE+ + S D + + + S + SAC+M I N +K S ++ D + SE+ VS
Sbjct: 148 NEVAHGLAVFSSRDAAASARDTLLSSDVYSACSMIILDNYRKGSQTNLSDETEGSESSVS 207
Query: 317 DLILEANHSPVNKI 330
L NHSP +
Sbjct: 208 FNRLSRNHSPTRPL 221
>sp|Q49539|DNAK_MYCH2 Chaperone protein DnaK OS=Mycoplasma hyopneumoniae (strain 232)
GN=dnaK PE=3 SV=1
Length = 600
Score = 35.4 bits (80), Expect = 0.65, Method: Compositional matrix adjust.
Identities = 50/189 (26%), Positives = 81/189 (42%), Gaps = 24/189 (12%)
Query: 160 KKYAPKVLLRRPFARSI-CEAYF-------KKNPARIGFLRVDML-------SLLLSMGN 204
K+YA K + + I AYF KN +I L+V+ + +L +
Sbjct: 100 KEYAEKKIGHKVTKAVITVPAYFDNAQREATKNAGKIAGLQVERIINEPTAAALAFGLDK 159
Query: 205 VAANSDVLVVDMAGGLLTGAVAERLGGTGYVCNTCIGDSLYPMDIVRIFNFSNEICKSIV 264
VLV D+ GG +V E GGT V +T GD+ D ++ NEI +V
Sbjct: 160 TEKEMKVLVYDLGGGTFDVSVLELSGGTFEVLSTS-GDNHLGGD-----DWDNEIVNWLV 213
Query: 265 R--ASVSDVTSQSETSEQSDQLESACNMEIQSNEQKSSSVSMEDISLSSENGVSDLILEA 322
+ V D +S+ + E A +I + Q S+VS+ + + +NG ++ LE
Sbjct: 214 KKIKEVYDFDPKSDKMALTRLKEEAEKTKINLSNQSVSTVSLPFLGM-GKNGPINVELEL 272
Query: 323 NHSPVNKIS 331
S K++
Sbjct: 273 KRSEFEKMT 281
>sp|Q4A8U5|DNAK_MYCH7 Chaperone protein DnaK OS=Mycoplasma hyopneumoniae (strain 7448)
GN=dnaK PE=3 SV=1
Length = 600
Score = 33.9 bits (76), Expect = 1.9, Method: Compositional matrix adjust.
Identities = 49/193 (25%), Positives = 83/193 (43%), Gaps = 32/193 (16%)
Query: 160 KKYAPKVLLRRPFARSI-CEAYF-------KKNPARIGFLRVDML-------SLLLSMGN 204
K+YA K + + I AYF KN +I L+V+ + +L +
Sbjct: 100 KEYAEKKIGHKVTKAVITVPAYFDNAQREATKNAGKIAGLQVERIINEPTAAALAFGLDK 159
Query: 205 VAANSDVLVVDMAGGLLTGAVAERLGGTGYVCNTCIGDSLYPMDIVRIFNFSNEICKSIV 264
VLV D+ GG +V E GGT V +T GD+ D ++ NEI +V
Sbjct: 160 TEKEMKVLVYDLGGGTFDVSVLELSGGTFEVLSTS-GDNHLGGD-----DWDNEIVNWLV 213
Query: 265 RASVSDVTSQSETSEQSDQL------ESACNMEIQSNEQKSSSVSMEDISLSSENGVSDL 318
+ + + + +SD++ E A +I + Q S+VS+ + + +NG ++
Sbjct: 214 KK----IKEEYDFDPKSDKMALTRLKEEAEKTKINLSNQSVSTVSLPFLGM-GKNGPINV 268
Query: 319 ILEANHSPVNKIS 331
LE S K++
Sbjct: 269 ELELKRSEFEKMT 281
>sp|Q4AAR4|DNAK_MYCHJ Chaperone protein DnaK OS=Mycoplasma hyopneumoniae (strain J / ATCC
25934 / NCTC 10110) GN=dnaK PE=3 SV=1
Length = 600
Score = 33.9 bits (76), Expect = 2.2, Method: Compositional matrix adjust.
Identities = 49/193 (25%), Positives = 83/193 (43%), Gaps = 32/193 (16%)
Query: 160 KKYAPKVLLRRPFARSI-CEAYF-------KKNPARIGFLRVDML-------SLLLSMGN 204
K+YA K + + I AYF KN +I L+V+ + +L +
Sbjct: 100 KEYAEKKIGHKVTKAVITVPAYFDNAQREATKNAGKIAGLQVERIINEPTAAALAFGLDK 159
Query: 205 VAANSDVLVVDMAGGLLTGAVAERLGGTGYVCNTCIGDSLYPMDIVRIFNFSNEICKSIV 264
VLV D+ GG +V E GGT V +T GD+ D ++ NEI +V
Sbjct: 160 TEKEMKVLVYDLGGGTFDVSVLELSGGTFEVLSTS-GDNHLGGD-----DWDNEIVNWLV 213
Query: 265 RASVSDVTSQSETSEQSDQL------ESACNMEIQSNEQKSSSVSMEDISLSSENGVSDL 318
+ + + + +SD++ E A +I + Q S+VS+ + + +NG ++
Sbjct: 214 KK----IKEEYDFDPKSDKMALTRLKEEAEKTKINLSNQSVSTVSLPFLGM-GKNGPINV 268
Query: 319 ILEANHSPVNKIS 331
LE S K++
Sbjct: 269 ELELKRSEFEKMT 281
>sp|Q4FZQ0|YF1BB_XENLA Protein YIF1B-B OS=Xenopus laevis GN=yif1b-b PE=2 SV=1
Length = 300
Score = 33.5 bits (75), Expect = 2.7, Method: Compositional matrix adjust.
Identities = 22/76 (28%), Positives = 41/76 (53%), Gaps = 11/76 (14%)
Query: 188 IGFLRVDMLSLLLSMGNVAANSDVLVVDMAG-------GLLTGAVAERL-GGTGY---VC 236
+ +L V++L++LLS+ V N+D+ VD+ G+++G +A L G TGY +
Sbjct: 180 LAWLIVEVLAILLSLYLVTVNTDLTTVDLVAFSGYKYVGMISGVIAGLLFGNTGYYVVLA 239
Query: 237 NTCIGDSLYPMDIVRI 252
CI + + +R+
Sbjct: 240 WCCISIVFFMIRTLRL 255
>sp|Q8IS41|CO16B_CONVX Conotoxin VxVIB OS=Conus vexillum PE=1 SV=1
Length = 88
Score = 33.1 bits (74), Expect = 3.0, Method: Composition-based stats.
Identities = 16/42 (38%), Positives = 23/42 (54%)
Query: 83 TEDDVQEKEDAQISGEFRDNRAIVDDNKAQCLSGEDIDEMRR 124
+ D++Q+ ED ++ E D+ D N C SGE IDE R
Sbjct: 37 SSDEMQDSEDLTLTKECTDDSQFCDPNDHDCCSGECIDEGGR 78
Database: swissprot
Posted date: Mar 23, 2013 2:32 AM
Number of letters in database: 191,569,459
Number of sequences in database: 539,616
Lambda K H
0.313 0.130 0.361
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 124,316,695
Number of Sequences: 539616
Number of extensions: 5139365
Number of successful extensions: 13228
Number of sequences better than 100.0: 50
Number of HSP's better than 100.0 without gapping: 28
Number of HSP's successfully gapped in prelim test: 36
Number of HSP's that attempted gapping in prelim test: 13052
Number of HSP's gapped (non-prelim): 202
length of query: 355
length of database: 191,569,459
effective HSP length: 118
effective length of query: 237
effective length of database: 127,894,771
effective search space: 30311060727
effective search space used: 30311060727
T: 11
A: 40
X1: 16 ( 7.2 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 42 (21.9 bits)
S2: 62 (28.5 bits)