Query 018481
Match_columns 355
No_of_seqs 158 out of 300
Neff 5.0
Searched_HMMs 46136
Date Fri Mar 29 09:23:06 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/018481.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/018481hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 PF04189 Gcd10p: Gcd10p family 100.0 3.3E-82 7.2E-87 612.5 24.4 265 14-279 1-275 (299)
2 KOG1416 tRNA(1-methyladenosine 100.0 1.4E-71 3E-76 553.1 22.4 335 11-354 12-352 (475)
3 COG2519 GCD14 tRNA(1-methylade 99.6 1.7E-15 3.8E-20 144.1 12.2 147 16-272 1-156 (256)
4 KOG2915 tRNA(1-methyladenosine 99.3 1E-11 2.3E-16 119.6 11.3 123 13-240 9-138 (314)
5 PF08704 GCD14: tRNA methyltra 98.6 6.2E-08 1.3E-12 92.6 6.0 92 165-272 2-102 (247)
6 PF14801 GCD14_N: tRNA methylt 97.8 4.1E-05 8.9E-10 57.4 4.5 50 15-65 4-53 (54)
7 PF01135 PCMT: Protein-L-isoas 96.2 0.012 2.6E-07 55.0 6.5 98 118-242 5-107 (209)
8 PRK13942 protein-L-isoaspartat 95.4 0.095 2.1E-06 48.5 9.2 52 191-242 60-111 (212)
9 TIGR00080 pimt protein-L-isoas 94.8 0.21 4.5E-06 45.9 9.4 100 116-242 8-112 (215)
10 KOG1661 Protein-L-isoaspartate 94.2 0.061 1.3E-06 51.2 4.5 55 182-236 51-111 (237)
11 COG2518 Pcm Protein-L-isoaspar 93.8 0.14 3.1E-06 48.3 6.0 113 119-257 7-121 (209)
12 PRK04266 fibrillarin; Provisio 93.0 0.21 4.7E-06 47.1 6.0 49 193-242 55-106 (226)
13 PRK13944 protein-L-isoaspartat 93.0 0.28 6.1E-06 44.9 6.6 50 193-242 58-107 (205)
14 PRK13943 protein-L-isoaspartat 91.3 0.59 1.3E-05 46.6 7.0 51 192-242 65-115 (322)
15 PLN02476 O-methyltransferase 91.1 0.41 8.9E-06 46.9 5.6 77 181-257 92-170 (278)
16 PRK00312 pcm protein-L-isoaspa 91.1 1.3 2.8E-05 40.4 8.5 49 190-241 61-109 (212)
17 PRK00377 cbiT cobalt-precorrin 88.1 1.7 3.7E-05 39.4 7.0 52 191-242 24-75 (198)
18 TIGR00438 rrmJ cell division p 87.7 1.6 3.5E-05 39.1 6.4 49 194-242 19-67 (188)
19 PLN02781 Probable caffeoyl-CoA 85.9 1.3 2.7E-05 41.9 4.9 68 190-257 51-120 (234)
20 TIGR02469 CbiT precorrin-6Y C5 85.1 3 6.5E-05 33.5 6.2 46 196-242 8-53 (124)
21 COG2242 CobL Precorrin-6B meth 84.9 2 4.4E-05 40.0 5.6 62 194-256 21-84 (187)
22 TIGR01848 PHA_reg_PhaR polyhyd 84.1 3 6.6E-05 35.6 5.9 66 101-203 7-78 (107)
23 PLN02589 caffeoyl-CoA O-methyl 82.6 2.6 5.7E-05 40.5 5.6 71 188-258 60-132 (247)
24 TIGR02752 MenG_heptapren 2-hep 82.2 3.4 7.4E-05 37.8 6.0 47 196-242 34-80 (231)
25 PRK00274 ksgA 16S ribosomal RN 80.3 6.2 0.00013 37.9 7.3 46 194-242 29-74 (272)
26 TIGR00446 nop2p NOL1/NOP2/sun 79.9 4.2 9.1E-05 38.9 6.0 49 194-242 57-106 (264)
27 PRK11873 arsM arsenite S-adeno 79.6 3.2 7E-05 39.2 5.0 44 199-242 69-112 (272)
28 PRK14903 16S rRNA methyltransf 78.7 4.6 9.9E-05 41.7 6.2 50 193-242 222-272 (431)
29 KOG1712 Adenine phosphoribosyl 78.3 2 4.3E-05 39.6 3.0 33 200-232 114-151 (183)
30 PRK14901 16S rRNA methyltransf 77.6 4.9 0.00011 41.3 6.0 64 193-256 237-303 (434)
31 PRK07402 precorrin-6B methylas 76.6 7.8 0.00017 34.9 6.4 50 192-242 25-74 (196)
32 PTZ00146 fibrillarin; Provisio 76.5 4 8.8E-05 40.5 4.8 40 202-241 127-166 (293)
33 PRK08317 hypothetical protein; 75.3 7.5 0.00016 34.8 5.9 45 197-241 9-53 (241)
34 PF01596 Methyltransf_3: O-met 75.2 2.6 5.7E-05 39.3 3.0 70 188-257 26-97 (205)
35 PRK11188 rrmJ 23S rRNA methylt 74.7 9.7 0.00021 35.2 6.6 46 197-242 40-86 (209)
36 PF07879 PHB_acc_N: PHB/PHA ac 73.2 3.3 7.1E-05 32.4 2.6 36 101-136 7-50 (64)
37 PRK00107 gidB 16S rRNA methylt 73.1 22 0.00048 32.6 8.5 76 152-242 4-79 (187)
38 PRK08287 cobalt-precorrin-6Y C 73.1 13 0.00027 33.2 6.8 51 192-243 16-66 (187)
39 PLN02233 ubiquinone biosynthes 72.7 8.5 0.00018 36.7 5.9 44 199-242 65-108 (261)
40 KOG0024 Sorbitol dehydrogenase 71.5 6.7 0.00014 39.8 5.0 56 200-258 162-218 (354)
41 PRK11933 yebU rRNA (cytosine-C 70.2 9.8 0.00021 40.0 6.1 61 196-256 99-164 (470)
42 PRK14103 trans-aconitate 2-met 69.8 11 0.00024 35.3 5.9 53 188-241 10-62 (255)
43 PRK10901 16S rRNA methyltransf 69.5 11 0.00024 38.6 6.3 48 194-242 230-278 (427)
44 COG4798 Predicted methyltransf 69.4 3.7 8.1E-05 39.1 2.6 47 197-243 38-84 (238)
45 TIGR00138 gidB 16S rRNA methyl 69.1 12 0.00026 33.9 5.7 38 203-242 39-76 (181)
46 COG4122 Predicted O-methyltran 69.0 16 0.00034 34.8 6.7 66 193-258 45-112 (219)
47 PF01209 Ubie_methyltran: ubiE 68.2 7 0.00015 37.0 4.2 44 199-242 39-82 (233)
48 PRK14902 16S rRNA methyltransf 65.9 14 0.0003 38.0 6.1 47 196-242 238-285 (444)
49 PF00398 RrnaAD: Ribosomal RNA 63.5 14 0.0003 35.2 5.3 59 157-241 3-61 (262)
50 smart00105 ArfGap Putative GTP 62.3 6.9 0.00015 33.0 2.7 47 112-158 49-103 (112)
51 PF02353 CMAS: Mycolic acid cy 62.1 11 0.00024 36.6 4.4 42 196-239 51-92 (273)
52 PRK14904 16S rRNA methyltransf 61.6 17 0.00037 37.4 5.9 48 196-243 239-286 (445)
53 PF01269 Fibrillarin: Fibrilla 61.0 13 0.00029 35.7 4.6 39 204-242 70-108 (229)
54 TIGR00563 rsmB ribosomal RNA s 60.0 22 0.00047 36.4 6.3 60 196-256 226-288 (426)
55 PRK14967 putative methyltransf 59.9 22 0.00048 32.8 5.8 46 195-242 24-69 (223)
56 smart00650 rADc Ribosomal RNA 57.8 26 0.00056 30.8 5.6 43 197-242 3-45 (169)
57 PRK14896 ksgA 16S ribosomal RN 57.8 29 0.00064 32.9 6.4 45 194-241 16-60 (258)
58 TIGR00755 ksgA dimethyladenosi 56.9 28 0.00061 32.8 6.1 44 194-240 16-59 (253)
59 COG0075 Serine-pyruvate aminot 56.6 75 0.0016 32.8 9.4 60 195-254 66-127 (383)
60 COG2226 UbiE Methylase involve 56.2 22 0.00048 34.2 5.2 42 200-242 44-85 (238)
61 TIGR00537 hemK_rel_arch HemK-r 55.4 22 0.00047 31.5 4.8 47 192-242 5-51 (179)
62 PRK06201 hypothetical protein; 54.5 28 0.0006 32.9 5.6 53 200-257 72-131 (221)
63 PRK01683 trans-aconitate 2-met 51.9 32 0.00069 32.0 5.5 46 195-241 19-64 (258)
64 PRK11705 cyclopropane fatty ac 51.6 32 0.0007 35.0 5.9 44 196-241 156-199 (383)
65 TIGR01744 XPRTase xanthine pho 51.0 43 0.00094 30.9 6.1 51 205-256 114-171 (191)
66 PTZ00338 dimethyladenosine tra 49.4 42 0.0009 33.0 6.1 44 194-240 23-66 (294)
67 KOG0820 Ribosomal RNA adenine 47.6 31 0.00068 34.5 4.8 45 192-239 43-87 (315)
68 PRK15451 tRNA cmo(5)U34 methyl 45.6 60 0.0013 30.4 6.4 37 205-241 54-91 (247)
69 TIGR01934 MenG_MenH_UbiE ubiqu 45.1 73 0.0016 28.2 6.6 45 197-241 29-73 (223)
70 PF12847 Methyltransf_18: Meth 44.9 36 0.00077 27.0 4.1 33 207-240 1-33 (112)
71 cd01445 TST_Repeats Thiosulfat 43.7 51 0.0011 28.5 5.1 39 193-231 80-123 (138)
72 cd08230 glucose_DH Glucose deh 43.0 62 0.0013 31.4 6.2 53 202-256 167-221 (355)
73 PRK00216 ubiE ubiquinone/menaq 42.7 74 0.0016 28.6 6.3 48 194-241 38-85 (239)
74 PRK09219 xanthine phosphoribos 41.7 76 0.0017 29.3 6.2 52 204-256 113-171 (189)
75 PRK14968 putative methyltransf 41.6 58 0.0013 28.2 5.2 41 198-241 14-54 (188)
76 cd08238 sorbose_phosphate_red 41.4 45 0.00099 33.5 5.1 40 202-241 170-212 (410)
77 TIGR03754 conj_TOL_TraD conjug 41.2 52 0.0011 36.2 5.7 70 196-265 196-271 (643)
78 TIGR01935 NOT-MenG RraA famliy 40.8 67 0.0014 28.8 5.5 51 202-257 48-105 (150)
79 PRK12487 ribonuclease activity 40.1 48 0.001 30.2 4.6 51 202-257 52-109 (163)
80 PRK13812 orotate phosphoribosy 39.9 82 0.0018 28.6 6.1 52 203-256 102-160 (176)
81 PRK07028 bifunctional hexulose 39.3 53 0.0012 33.7 5.3 59 194-257 276-340 (430)
82 cd08239 THR_DH_like L-threonin 39.3 84 0.0018 30.1 6.4 54 199-255 155-209 (339)
83 PF08004 DUF1699: Protein of u 39.2 31 0.00067 30.5 3.0 22 116-137 94-115 (131)
84 PTZ00098 phosphoethanolamine N 38.1 71 0.0015 30.5 5.6 61 176-240 23-83 (263)
85 KOG0022 Alcohol dehydrogenase, 38.1 59 0.0013 33.3 5.2 60 196-257 181-240 (375)
86 PLN02244 tocopherol O-methyltr 38.1 72 0.0016 31.7 5.8 45 194-240 100-149 (340)
87 PRK10144 formate-dependent nit 37.7 43 0.00093 29.5 3.7 51 98-171 44-96 (126)
88 COG0503 Apt Adenine/guanine ph 37.6 67 0.0015 29.3 5.1 39 205-243 113-158 (179)
89 COG0030 KsgA Dimethyladenosine 37.3 53 0.0012 32.1 4.7 43 195-240 18-60 (259)
90 cd08301 alcohol_DH_plants Plan 37.0 95 0.0021 30.3 6.5 54 199-255 179-233 (369)
91 TIGR03147 cyt_nit_nrfF cytochr 36.3 46 0.00099 29.3 3.6 51 98-171 44-96 (126)
92 PRK04457 spermidine synthase; 36.1 74 0.0016 30.5 5.4 39 202-241 61-99 (262)
93 KOG1596 Fibrillarin and relate 36.1 27 0.00058 34.5 2.4 41 202-242 149-191 (317)
94 cd04466 S1_YloQ_GTPase S1_YloQ 36.0 70 0.0015 23.6 4.2 28 15-42 36-63 (68)
95 TIGR02798 ligK_PcmE 4-carboxy- 35.8 80 0.0017 30.0 5.5 51 202-257 70-127 (222)
96 PRK13810 orotate phosphoribosy 35.4 1.2E+02 0.0025 28.0 6.4 53 202-256 116-175 (187)
97 TIGR03366 HpnZ_proposed putati 35.4 1.1E+02 0.0025 28.6 6.5 54 199-255 112-166 (280)
98 PF12990 DUF3874: Domain of un 35.2 72 0.0016 25.4 4.3 37 170-206 25-61 (73)
99 KOG3967 Uncharacterized conser 35.1 1.2E+02 0.0027 29.6 6.6 88 151-244 133-226 (297)
100 PRK00050 16S rRNA m(4)C1402 me 34.3 93 0.002 30.9 5.9 45 196-240 8-52 (296)
101 PF03737 Methyltransf_6: Demet 34.2 66 0.0014 28.5 4.4 56 196-256 47-109 (154)
102 PF07021 MetW: Methionine bios 33.9 52 0.0011 31.0 3.8 34 204-237 10-43 (193)
103 PRK09424 pntA NAD(P) transhydr 33.7 51 0.0011 35.2 4.2 119 111-254 72-208 (509)
104 PRK13811 orotate phosphoribosy 33.5 1.2E+02 0.0025 27.4 5.9 49 206-256 102-157 (170)
105 PRK15219 carbonic anhydrase; P 32.7 1.2E+02 0.0026 29.3 6.2 98 125-226 49-161 (245)
106 COG0684 MenG Demethylmenaquino 32.7 68 0.0015 30.5 4.4 52 201-257 64-122 (210)
107 PLN02740 Alcohol dehydrogenase 32.6 1.2E+02 0.0025 30.1 6.4 52 201-255 192-244 (381)
108 TIGR02998 RraA_entero regulato 32.1 1.1E+02 0.0025 27.7 5.6 51 202-257 52-109 (161)
109 PRK09262 hypothetical protein; 32.0 91 0.002 29.6 5.2 52 201-257 71-129 (225)
110 cd08274 MDR9 Medium chain dehy 31.8 1.5E+02 0.0032 28.2 6.7 51 200-255 170-222 (350)
111 TIGR02822 adh_fam_2 zinc-bindi 31.6 1.5E+02 0.0032 28.8 6.8 53 200-256 158-211 (329)
112 TIGR02818 adh_III_F_hyde S-(hy 31.3 1.3E+02 0.0027 29.7 6.3 52 201-255 179-231 (368)
113 PHA03412 putative methyltransf 31.3 1.1E+02 0.0023 29.8 5.6 35 208-242 50-86 (241)
114 PRK08008 caiC putative crotono 31.1 1.5E+02 0.0032 29.9 6.9 51 191-243 45-97 (517)
115 COG1064 AdhP Zn-dependent alco 30.5 82 0.0018 32.0 4.9 42 200-243 159-201 (339)
116 PF04814 HNF-1_N: Hepatocyte n 30.2 32 0.00069 32.0 1.8 25 113-137 4-31 (180)
117 cd08300 alcohol_DH_class_III c 30.2 1.4E+02 0.0031 29.2 6.5 53 200-255 179-232 (368)
118 TIGR03201 dearomat_had 6-hydro 30.2 1.4E+02 0.003 29.0 6.4 51 201-255 160-211 (349)
119 PRK08245 hypothetical protein; 29.8 89 0.0019 29.9 4.8 51 202-257 82-139 (240)
120 cd08237 ribitol-5-phosphate_DH 29.7 78 0.0017 30.8 4.5 49 203-253 159-208 (341)
121 PLN02950 4-alpha-glucanotransf 29.5 2.8E+02 0.0061 31.9 9.3 126 111-242 580-778 (909)
122 COG1889 NOP1 Fibrillarin-like 28.8 94 0.002 30.0 4.6 63 196-259 62-139 (231)
123 COG0144 Sun tRNA and rRNA cyto 28.2 1.1E+02 0.0024 30.9 5.3 64 193-257 141-209 (355)
124 PRK12560 adenine phosphoribosy 28.0 1.7E+02 0.0036 26.8 6.1 39 204-242 110-155 (187)
125 PRK09372 ribonuclease activity 27.6 1.3E+02 0.0028 27.2 5.2 51 202-257 52-109 (159)
126 PRK08558 adenine phosphoribosy 27.3 1.5E+02 0.0032 28.4 5.8 40 204-243 172-218 (238)
127 cd03378 beta_CA_cladeC Carboni 27.2 1.9E+02 0.004 26.0 6.1 58 130-189 2-65 (154)
128 TIGR02227 sigpep_I_bact signal 27.1 77 0.0017 28.1 3.6 55 13-71 30-88 (163)
129 COG2230 Cfa Cyclopropane fatty 27.0 75 0.0016 31.5 3.8 59 196-256 61-121 (283)
130 TIGR03587 Pse_Me-ase pseudamin 27.0 1.8E+02 0.0038 26.8 6.1 37 204-241 40-76 (204)
131 cd08281 liver_ADH_like1 Zinc-d 26.9 1.7E+02 0.0036 28.8 6.3 53 200-255 184-237 (371)
132 PRK05500 bifunctional orotidin 26.9 1.5E+02 0.0033 31.4 6.3 52 203-256 388-446 (477)
133 PF05175 MTS: Methyltransferas 26.7 99 0.0021 27.3 4.3 50 191-241 14-64 (170)
134 PRK00121 trmB tRNA (guanine-N( 26.7 1.1E+02 0.0023 28.0 4.6 53 184-242 22-74 (202)
135 TIGR02825 B4_12hDH leukotriene 26.6 1.9E+02 0.0042 27.5 6.5 52 200-255 131-184 (325)
136 COG2897 SseA Rhodanese-related 26.5 1.3E+02 0.0028 29.9 5.4 52 187-239 69-123 (285)
137 TIGR00406 prmA ribosomal prote 25.9 1.3E+02 0.0028 29.1 5.2 36 205-242 157-192 (288)
138 PF13847 Methyltransf_31: Meth 25.7 1.5E+02 0.0032 25.2 5.0 37 206-242 2-38 (152)
139 PLN00416 carbonate dehydratase 25.6 1.6E+02 0.0034 28.8 5.7 102 121-225 37-157 (258)
140 cd08294 leukotriene_B4_DH_like 25.5 2.1E+02 0.0045 26.9 6.5 51 201-255 137-189 (329)
141 PF04079 DUF387: Putative tran 24.7 47 0.001 30.0 1.8 26 111-138 94-119 (159)
142 PRK11207 tellurite resistance 24.2 1.5E+02 0.0032 26.9 5.0 40 198-240 21-60 (197)
143 TIGR00762 DegV EDD domain prot 24.2 4.3E+02 0.0092 25.3 8.4 110 102-242 108-233 (275)
144 PRK15068 tRNA mo(5)U34 methylt 24.2 1.7E+02 0.0036 29.0 5.7 41 198-240 113-153 (322)
145 PF06325 PrmA: Ribosomal prote 24.1 1.9E+02 0.0042 28.6 6.1 35 205-241 159-193 (295)
146 PRK00517 prmA ribosomal protei 24.0 1.5E+02 0.0032 27.9 5.2 35 205-241 117-151 (250)
147 TIGR00281 segregation and cond 23.5 83 0.0018 29.2 3.2 26 111-138 99-124 (186)
148 PRK11493 sseA 3-mercaptopyruva 23.2 1.6E+02 0.0035 28.2 5.3 49 192-242 71-122 (281)
149 cd08264 Zn_ADH_like2 Alcohol d 23.1 2E+02 0.0042 27.1 5.8 37 200-238 155-193 (325)
150 PLN02723 3-mercaptopyruvate su 22.6 1.4E+02 0.0031 29.4 4.9 46 192-238 87-135 (320)
151 cd05188 MDR Medium chain reduc 22.3 2.1E+02 0.0045 25.6 5.5 52 199-254 126-178 (271)
152 PRK13168 rumA 23S rRNA m(5)U19 22.0 2E+02 0.0044 29.6 6.0 44 196-242 286-329 (443)
153 cd08254 hydroxyacyl_CoA_DH 6-h 21.7 1.8E+02 0.0038 27.4 5.2 53 199-255 157-210 (338)
154 COG3088 CcmH Uncharacterized p 21.7 75 0.0016 28.9 2.4 52 98-171 48-100 (153)
155 PLN02336 phosphoethanolamine N 21.6 2.5E+02 0.0054 28.8 6.6 44 196-241 255-298 (475)
156 PLN03154 putative allyl alcoho 21.5 2E+02 0.0044 28.1 5.7 51 201-255 152-205 (348)
157 PHA03411 putative methyltransf 21.4 2.1E+02 0.0045 28.4 5.7 48 192-241 50-97 (279)
158 cd08292 ETR_like_2 2-enoyl thi 21.4 1.4E+02 0.0031 27.9 4.5 32 200-231 132-165 (324)
159 TIGR00740 methyltransferase, p 21.3 2.8E+02 0.0061 25.5 6.4 37 205-241 51-88 (239)
160 TIGR01743 purR_Bsub pur operon 20.9 1.8E+02 0.0038 28.6 5.1 40 203-242 189-235 (268)
161 cd08242 MDR_like Medium chain 20.8 2.5E+02 0.0054 26.4 6.0 54 199-256 147-201 (319)
162 TIGR00452 methyltransferase, p 20.7 1.8E+02 0.004 28.9 5.2 41 199-241 113-153 (314)
163 COG4359 Uncharacterized conser 20.6 2.5E+02 0.0054 26.8 5.7 49 193-241 62-122 (220)
164 cd08283 FDH_like_1 Glutathione 20.5 2E+02 0.0043 28.5 5.5 39 201-240 178-217 (386)
165 cd08277 liver_alcohol_DH_like 20.3 1.4E+02 0.003 29.3 4.3 53 200-255 177-230 (365)
166 PF01272 GreA_GreB: Transcript 20.3 2.4E+02 0.0053 21.8 4.9 56 14-70 3-64 (77)
167 PLN03236 4-alpha-glucanotransf 20.1 7E+02 0.015 28.2 9.9 110 127-242 428-603 (745)
No 1
>PF04189 Gcd10p: Gcd10p family; InterPro: IPR007316 eIF-3 is a multisubunit complex that stimulates translation initiation in vitro at several different steps. This family corresponds to the gamma subunit of eIF3 [, ].; GO: 0003743 translation initiation factor activity, 0006413 translational initiation
Probab=100.00 E-value=3.3e-82 Score=612.50 Aligned_cols=265 Identities=40% Similarity=0.630 Sum_probs=236.5
Q ss_pred CCcccCCCEEEEEecCCCeEEEEEEecCCEEEEcc-eeeeCCCccCCCCCcEEEEeCCCCCCCCcccCCCCc----ch--
Q 018481 14 AQLTWEGCSVLLDINDGDRLVFARLTSGSTLKIGN-KNCSLQPLIGCPFGSLFQVDNGKEGPNLSRVIPSTE----DD-- 86 (355)
Q Consensus 14 ~~~I~eGd~VlL~~~~g~~~~iv~l~~~~~i~lgK-~~f~l~~LIG~pyGstfEi~~~~~~~~~~~~~~~~~----~~-- 86 (355)
+++|++||+|+|++++| .+++++|+|+++|+||| ++|++++|||+|||+||||.+++....+.......+ +.
T Consensus 1 h~~I~~gd~Vil~~~~~-~~k~v~l~~~~~i~lGK~~sf~~~~lIG~pyg~tfEi~~~~~l~~v~~~~~~~~~~~~~~~~ 79 (299)
T PF04189_consen 1 HSIIQEGDYVILRLPSG-NMKIVKLKPNKTISLGKFGSFPLNDLIGRPYGSTFEIQDDKKLRVVPRNELHAEKDPDDDEE 79 (299)
T ss_pred CCCcCCCCEEEEEcCCC-cEEEEEECCCCEEEecCCCcccHHHhcCCCCCcEEEEeCCCccccccccccccccccccccc
Confidence 46899999999999955 78899999999999999 569999999999999999999883332222110000 00
Q ss_pred -hhhhhhhhccccccCccccccCcccccCCHHHHHHHHHcCCChHHHHHHHHhcccccccchhhcHHHHHHHhhhccCCc
Q 018481 87 -VQEKEDAQISGEFRDNRAIVDDNKAQCLSGEDIDEMRRQGATGEEIVEALIANSATFEKKTSFSQEKYKLKKQKKYAPK 165 (355)
Q Consensus 87 -~~~~~~~~~~~~~~dNr~i~Dd~~sQkLt~eeIe~LKk~G~sG~eII~~LienS~tF~~KT~FSQeKYlkKK~kKy~~~ 165 (355)
....+.....+.++|||+|+|++++|+||+|||++||++|++|+|||++||+||+||++||+||||||+|||+|||+++
T Consensus 80 ~~~~~~~~~~~~~~~dNr~i~D~~~~QkLt~eeIe~LK~~g~sg~eII~kLiens~tF~~KT~FSqeKYlkrK~kKy~~~ 159 (299)
T PF04189_consen 80 EGDDSEELENEESSRDNRNIIDDNSSQKLTQEEIEELKKEGVSGEEIIEKLIENSSTFDKKTEFSQEKYLKRKQKKYLKR 159 (299)
T ss_pred ccccccccccccccccccccccccccccCCHHHHHHHHHcCCCHHHHHHHHHHhccchhhhhHHHHHHHHHHHHhhhhce
Confidence 0012234556789999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred EEEeCCChHHHHHHHHhcCcccccccCHhHHHHHHHhcCCCCCCeEEEEeCCCcHHHHHHHHHcCCcceEEEEecCCCCC
Q 018481 166 VLLRRPFARSICEAYFKKNPARIGFLRVDMLSLLLSMGNVAANSDVLVVDMAGGLLTGAVAERLGGTGYVCNTCIGDSLY 245 (355)
Q Consensus 166 ftilkPt~~~i~e~y~~KdP~KI~~LR~DtLa~iLs~aNV~~g~rvLV~D~~~GLltaAv~eRmGg~G~Vi~~~~g~~p~ 245 (355)
|+|++||+++||++||.|+|.||++||+|+|||||+||||++|+||||||+|+|||+|||||||||.|+||++|.|++||
T Consensus 160 ftv~~pt~~~l~e~y~~k~p~Ki~~lR~d~la~il~~aNV~~g~r~Lv~D~~~GLv~aav~eRmgg~G~i~~~~~~~~~p 239 (299)
T PF04189_consen 160 FTVLRPTIRNLCEYYFEKDPQKIMDLRFDTLAQILSLANVHAGGRVLVVDDCGGLVVAAVAERMGGSGNIITLHHGNSPP 239 (299)
T ss_pred EEEeCCCHHHHHHHHhhcChHHHhccCHHHHHHHHHhcCCCCCCeEEEEeCCCChHHHHHHHHhCCCceEEEEeeCCCCC
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred hhhhHHhcCCCHHHHhhee--eeehhhhcccccccc
Q 018481 246 PMDIVRIFNFSNEICKSIV--RASVSDVTSQSETSE 279 (355)
Q Consensus 246 ~~~~l~~~Nf~~~~~~~i~--~~~l~~l~~~~~~~~ 279 (355)
++++|++|||+.+.+.+++ ..+|..|..++..+.
T Consensus 240 ~~~~l~~~nf~~~~~~~~~~~~~~l~~l~~l~~~~~ 275 (299)
T PF04189_consen 240 NLDILKYFNFDEENLSSIHPLNFNLKTLSWLQLLEP 275 (299)
T ss_pred CHHHHHhCCCChhccccccccchhhhhhhhhhccCC
Confidence 9999999999999999988 778888877666655
No 2
>KOG1416 consensus tRNA(1-methyladenosine) methyltransferase, subunit GCD10 [Translation, ribosomal structure and biogenesis]
Probab=100.00 E-value=1.4e-71 Score=553.07 Aligned_cols=335 Identities=37% Similarity=0.505 Sum_probs=280.5
Q ss_pred cCCCCcccCCCEEEEEecCCCeEEEEEEecCCEEEEcceeeeCCCccCCC----CCcEEEEeCCCCCCCCcccCCCCcch
Q 018481 11 IRNAQLTWEGCSVLLDINDGDRLVFARLTSGSTLKIGNKNCSLQPLIGCP----FGSLFQVDNGKEGPNLSRVIPSTEDD 86 (355)
Q Consensus 11 ~~~~~~I~eGd~VlL~~~~g~~~~iv~l~~~~~i~lgK~~f~l~~LIG~p----yGstfEi~~~~~~~~~~~~~~~~~~~ 86 (355)
-++...|++|++|+|...||.+..+++..++++|.+||..|.+++++|+| ||+.|++..+......+...+.
T Consensus 12 ~ps~~~i~~g~~v~L~k~d~~~~v~v~~~~~~~i~~~k~~f~~d~~~gkpk~~~~g~~fe~~~~e~~~~~s~~~~~---- 87 (475)
T KOG1416|consen 12 LPSKIEIKSGTSVKLQKFDGFRVVDVRGGPTKKILIGKEGFSADNLFGKPKNRLLGQEFEVTNEEKDDGLSSPPLS---- 87 (475)
T ss_pred CCCceeecCCceEEeeccCCceeeeeecccccEEEeccccccchhhhCCCCccccchhhhhhcccccccccccCcc----
Confidence 45668899999999999989888777777999999999779999999999 9999999887432221211110
Q ss_pred hhhhhhhhccccccCccccccCcccccCCHHHHHHHHHcCCChHHHHHHHHhcccccccchhhcHHHHHHHhhhccCCcE
Q 018481 87 VQEKEDAQISGEFRDNRAIVDDNKAQCLSGEDIDEMRRQGATGEEIVEALIANSATFEKKTSFSQEKYKLKKQKKYAPKV 166 (355)
Q Consensus 87 ~~~~~~~~~~~~~~dNr~i~Dd~~sQkLt~eeIe~LKk~G~sG~eII~~LienS~tF~~KT~FSQeKYlkKK~kKy~~~f 166 (355)
..+.+..+..++++|||+|+|++.+|+||.|||++||++|++|+|||++||+||+||++||+||||||++||+|||+.+|
T Consensus 88 ~~e~ev~~~~e~s~dNr~ivd~~kaQ~Lt~EeI~~mr~eg~~g~EiI~kLienSkTF~~KT~fSQeKYv~rK~kKy~~~~ 167 (475)
T KOG1416|consen 88 KKEREVLEISESSADNREIVDDGKAQKLTQEEIEEMRQEGLSGEEIIEKLIENSKTFHNKTVFSQEKYVLRKKKKYAKRF 167 (475)
T ss_pred ccccccccccccCCCchhhhcccccccCCHHHHHHHHHhccCHHHHHHHHHhcCcccccchhhhHHHHHHHHhhhhhhhe
Confidence 01233456678999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred EEeCCChHHHHHHHHhcCcccccccCHhHHHHHHHhcCCCCCCeEEEEeCCCcHHHHHHHHHcCCcceEEEEecCCCCCh
Q 018481 167 LLRRPFARSICEAYFKKNPARIGFLRVDMLSLLLSMGNVAANSDVLVVDMAGGLLTGAVAERLGGTGYVCNTCIGDSLYP 246 (355)
Q Consensus 167 tilkPt~~~i~e~y~~KdP~KI~~LR~DtLa~iLs~aNV~~g~rvLV~D~~~GLltaAv~eRmGg~G~Vi~~~~g~~p~~ 246 (355)
+|+|||+|+||++||.|||+||++||.|+|||||+||||++|++|||+|+|+|||+|||+|||||+|.|+++|+|..|+
T Consensus 168 ~v~rPt~r~l~~~yy~kdp~rI~~lr~D~Lsl~Ltlanv~~g~~~Lv~d~tgGL~~galleRmgG~G~i~~~hpG~vp~- 246 (475)
T KOG1416|consen 168 QVLRPTIRLLLQAYYDKDPQRILDLRADTLSLLLTLANVQAGGNYLVVDETGGLLLGALLERMGGTGDIIHKHPGKVPQ- 246 (475)
T ss_pred eeechhHHHHHHHHHHhChHHHhhhhHHHHHHHHHHhCcccCCeEEEEecCCcchHHHHHHHhcCCceeEEecCCCCch-
Confidence 9999999999999999999999999999999999999999999999999999999999999999999999999999996
Q ss_pred hhhHHhcCCCHHHHhheeeeehhhhccccccccccccc-cccccccccccccccccccccccccccCCCcchhhhhccCC
Q 018481 247 MDIVRIFNFSNEICKSIVRASVSDVTSQSETSEQSDQL-ESACNMEIQSNEQKSSSVSMEDISLSSENGVSDLILEANHS 325 (355)
Q Consensus 247 ~~~l~~~Nf~~~~~~~i~~~~l~~l~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 325 (355)
..++..|||++..+++++.++|+++++........... .-.+..|.+.+|-+.+.+..+|.....++++.+.....
T Consensus 247 ~~~~~~~~~~d~~l~~lv~~~i~~vl~~~h~~~~~~~~~~~ve~~e~~l~E~~~~~~~~eE~~a~~~~~~~~~i~~~--- 323 (475)
T KOG1416|consen 247 ISAVLIFNFPDANLDRLVQVNINEVLSKKHVTTDANLLYSVVEPPENELNETQLSPLPKEEPEAIEPGKLKNTIDHK--- 323 (475)
T ss_pred HHHHHHhcCchhhhhheeeccHHHHhHhhhcCCccccccceecCCCCchhhhccCCcccccchhcCCCccccccccc---
Confidence 89999999999999999999999998744433322222 23356666667666666666777777777766665321
Q ss_pred Cccccccccc-ccCcccHHHHHHHHHcCCC
Q 018481 326 PVNKISKSHK-VGEKASQETLKLWKENGFS 354 (355)
Q Consensus 326 ~~~~~~~~~~-~~~~~~~~~~~~~~~~gfs 354 (355)
.+...++.+ .+.-...+.+..|.++|+.
T Consensus 324 -~~~~r~~~~~~s~~~~~~~~~~~~~~~~~ 352 (475)
T KOG1416|consen 324 -ESLIRKAKWYNSQWQIKEGIEEWLYEGLV 352 (475)
T ss_pred -hhhhhhhhhhhhhhhhhhhhhhhhhcchh
Confidence 333333332 2555677889999999985
No 3
>COG2519 GCD14 tRNA(1-methyladenosine) methyltransferase and related methyltransferases [Translation, ribosomal structure and biogenesis]
Probab=99.63 E-value=1.7e-15 Score=144.11 Aligned_cols=147 Identities=22% Similarity=0.330 Sum_probs=119.6
Q ss_pred cccCCCEEEEEecCCCeEEEEEEecCCEEEEcceeeeCCCccCCCCCcEEEEeCCCCCCCCcccCCCCcchhhhhhhhhc
Q 018481 16 LTWEGCSVLLDINDGDRLVFARLTSGSTLKIGNKNCSLQPLIGCPFGSLFQVDNGKEGPNLSRVIPSTEDDVQEKEDAQI 95 (355)
Q Consensus 16 ~I~eGd~VlL~~~~g~~~~iv~l~~~~~i~lgK~~f~l~~LIG~pyGstfEi~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 95 (355)
++++||.|+|...+++++ ++++.++++++..+|.|+++++||+|||.......|..
T Consensus 1 ~~~~gd~vlL~~~~~~~~-lv~~~~~~~~~t~~G~i~~~~vigk~~G~~i~s~~G~~----------------------- 56 (256)
T COG2519 1 PFKEGDPVLLTDERGRRY-LVRLTPGEKFHTDLGIIPHDEVIGKPYGEVIKSHLGVK----------------------- 56 (256)
T ss_pred CCCCCCeEEEEecCCcEE-EEeccCCcccccceeeechhhhcCCCCCceEEeeCCce-----------------------
Confidence 478999999999977555 99999999999999999999999999999999887753
Q ss_pred cccccCccccccCcccccCCHHHHHHHHHcCCChHHHHHHHHhcccccccchhhcHHHHHHHhhhccCCcEEEeCCChHH
Q 018481 96 SGEFRDNRAIVDDNKAQCLSGEDIDEMRRQGATGEEIVEALIANSATFEKKTSFSQEKYKLKKQKKYAPKVLLRRPFARS 175 (355)
Q Consensus 96 ~~~~~dNr~i~Dd~~sQkLt~eeIe~LKk~G~sG~eII~~LienS~tF~~KT~FSQeKYlkKK~kKy~~~ftilkPt~~~ 175 (355)
|.|++|++.+
T Consensus 57 ----------------------------------------------------------------------f~vl~p~~~d 66 (256)
T COG2519 57 ----------------------------------------------------------------------FYVLKPTPED 66 (256)
T ss_pred ----------------------------------------------------------------------EEEeCCCHHH
Confidence 3444444444
Q ss_pred HH-------HHHHhcCcccccccCHhHHHHHHHhcCCCCCCeEEEEeCCCcHHHHHHHHHcCCcceEEEEecCCC--CCh
Q 018481 176 IC-------EAYFKKNPARIGFLRVDMLSLLLSMGNVAANSDVLVVDMAGGLLTGAVAERLGGTGYVCNTCIGDS--LYP 246 (355)
Q Consensus 176 i~-------e~y~~KdP~KI~~LR~DtLa~iLs~aNV~~g~rvLV~D~~~GLltaAv~eRmGg~G~Vi~~~~g~~--p~~ 246 (355)
+. +..|+|| .|+|+.++||.||+|||.+++++|.|++++|.-+|+.|.|+++..... ..+
T Consensus 67 ~~~~~~R~tQiIyPKD-----------~~~I~~~~gi~pg~rVlEAGtGSG~lt~~La~~vg~~G~v~tyE~r~d~~k~A 135 (256)
T COG2519 67 YLLSMKRRTQIIYPKD-----------AGYIVARLGISPGSRVLEAGTGSGALTAYLARAVGPEGHVTTYEIREDFAKTA 135 (256)
T ss_pred HHHhCcCCCceecCCC-----------HHHHHHHcCCCCCCEEEEcccCchHHHHHHHHhhCCCceEEEEEecHHHHHHH
Confidence 43 3347788 799999999999999999999999999999999999999999987663 335
Q ss_pred hhhHHhcCCCHHHHhheeeeehhhhc
Q 018481 247 MDIVRIFNFSNEICKSIVRASVSDVT 272 (355)
Q Consensus 247 ~~~l~~~Nf~~~~~~~i~~~~l~~l~ 272 (355)
..+++.++|.+. +...+.++.
T Consensus 136 ~~Nl~~~~l~d~-----v~~~~~Dv~ 156 (256)
T COG2519 136 RENLSEFGLGDR-----VTLKLGDVR 156 (256)
T ss_pred HHHHHHhccccc-----eEEEecccc
Confidence 577778877775 334445553
No 4
>KOG2915 consensus tRNA(1-methyladenosine) methyltransferase, subunit GCD14 [Translation, ribosomal structure and biogenesis]
Probab=99.32 E-value=1e-11 Score=119.63 Aligned_cols=123 Identities=22% Similarity=0.285 Sum_probs=104.7
Q ss_pred CCCcccCCCEEEEEecCCCeEEEEEEecCCEEEEcceeeeCCCccCCCCCcEEEEeCCCCCCCCcccCCCCcchhhhhhh
Q 018481 13 NAQLTWEGCSVLLDINDGDRLVFARLTSGSTLKIGNKNCSLQPLIGCPFGSLFQVDNGKEGPNLSRVIPSTEDDVQEKED 92 (355)
Q Consensus 13 ~~~~I~eGd~VlL~~~~g~~~~iv~l~~~~~i~lgK~~f~l~~LIG~pyGstfEi~~~~~~~~~~~~~~~~~~~~~~~~~ 92 (355)
-.+.|++||.||+.+.-| .++.+++.+++++..--|.|+..++||+|||+......|++
T Consensus 9 yk~~ie~GDlvi~~~~~~-~m~p~~v~r~~~~~~~yGa~~h~~iIGK~~G~~v~sskG~~-------------------- 67 (314)
T KOG2915|consen 9 YKRRIEEGDLVIAYVGRG-EMKPVKVFREGTFQTRYGALPHSDIIGKPYGSKVASSKGKF-------------------- 67 (314)
T ss_pred hhhhcccCCEEEEEEccC-ceEEEEEeccceeeccccccchhheecCCccceeeecCCcE--------------------
Confidence 567899999999999976 67799999999998888999999999999999888865554
Q ss_pred hhccccccCccccccCcccccCCHHHHHHHHHcCCChHHHHHHHHhcccccccchhhcHHHHHHHhhhccCCcEEEeCCC
Q 018481 93 AQISGEFRDNRAIVDDNKAQCLSGEDIDEMRRQGATGEEIVEALIANSATFEKKTSFSQEKYKLKKQKKYAPKVLLRRPF 172 (355)
Q Consensus 93 ~~~~~~~~dNr~i~Dd~~sQkLt~eeIe~LKk~G~sG~eII~~LienS~tF~~KT~FSQeKYlkKK~kKy~~~ftilkPt 172 (355)
+.+++||
T Consensus 68 -------------------------------------------------------------------------vylL~PT 74 (314)
T KOG2915|consen 68 -------------------------------------------------------------------------VYLLQPT 74 (314)
T ss_pred -------------------------------------------------------------------------EEEecCC
Confidence 3455555
Q ss_pred hHHHH-------HHHHhcCcccccccCHhHHHHHHHhcCCCCCCeEEEEeCCCcHHHHHHHHHcCCcceEEEEec
Q 018481 173 ARSIC-------EAYFKKNPARIGFLRVDMLSLLLSMGNVAANSDVLVVDMAGGLLTGAVAERLGGTGYVCNTCI 240 (355)
Q Consensus 173 ~~~i~-------e~y~~KdP~KI~~LR~DtLa~iLs~aNV~~g~rvLV~D~~~GLltaAv~eRmGg~G~Vi~~~~ 240 (355)
+.+-. ++.|.+| ++|||++.+|+||++|+..++++|-+.-|++.-+|..|.++++.-
T Consensus 75 pELWTl~LphRTQI~Yt~D-----------ia~I~~~L~i~PGsvV~EsGTGSGSlShaiaraV~ptGhl~tfef 138 (314)
T KOG2915|consen 75 PELWTLALPHRTQILYTPD-----------IAMILSMLEIRPGSVVLESGTGSGSLSHAIARAVAPTGHLYTFEF 138 (314)
T ss_pred hHHhhhhccCcceEEeccc-----------HHHHHHHhcCCCCCEEEecCCCcchHHHHHHHhhCcCcceEEEEe
Confidence 54432 3346666 899999999999999999999999999999999999999999754
No 5
>PF08704 GCD14: tRNA methyltransferase complex GCD14 subunit; InterPro: IPR014816 GCD14 is a subunit of the tRNA methyltransferase complex and is required for 1-methyladenosine modification and maturation of initiator methionyl-tRNA []. ; GO: 0016429 tRNA (adenine-N1-)-methyltransferase activity, 0030488 tRNA methylation; PDB: 2YVL_C 1YB2_A 2B25_B 1O54_A 2PWY_B 1I9G_A 3LGA_B 3LHD_C 3MB5_A.
Probab=98.60 E-value=6.2e-08 Score=92.58 Aligned_cols=92 Identities=23% Similarity=0.241 Sum_probs=58.2
Q ss_pred cEEEeCCChHHHH-------HHHHhcCcccccccCHhHHHHHHHhcCCCCCCeEEEEeCCCcHHHHHHHHHcCCcceEEE
Q 018481 165 KVLLRRPFARSIC-------EAYFKKNPARIGFLRVDMLSLLLSMGNVAANSDVLVVDMAGGLLTGAVAERLGGTGYVCN 237 (355)
Q Consensus 165 ~ftilkPt~~~i~-------e~y~~KdP~KI~~LR~DtLa~iLs~aNV~~g~rvLV~D~~~GLltaAv~eRmGg~G~Vi~ 237 (355)
++.|++||+.+.. ++.|+|| +|+|+.+++|+||++||..++++|.|+.+++..+|..|+|++
T Consensus 2 ~v~vl~Pt~e~~~~~l~rrtQIiYpkD-----------~~~I~~~l~i~pG~~VlEaGtGSG~lt~~l~r~v~p~G~v~t 70 (247)
T PF08704_consen 2 FVYVLRPTPELWTLSLPRRTQIIYPKD-----------ISYILMRLDIRPGSRVLEAGTGSGSLTHALARAVGPTGHVYT 70 (247)
T ss_dssp --------HHHHHHTS-SSS----HHH-----------HHHHHHHTT--TT-EEEEE--TTSHHHHHHHHHHTTTSEEEE
T ss_pred CccccchhHHHHHHhccCCcceeeCch-----------HHHHHHHcCCCCCCEEEEecCCcHHHHHHHHHHhCCCeEEEc
Confidence 4689999998774 6777777 899999999999999999999999999999999999999999
Q ss_pred EecCCCC--ChhhhHHhcCCCHHHHhheeeeehhhhc
Q 018481 238 TCIGDSL--YPMDIVRIFNFSNEICKSIVRASVSDVT 272 (355)
Q Consensus 238 ~~~g~~p--~~~~~l~~~Nf~~~~~~~i~~~~l~~l~ 272 (355)
+...+.- .+...++.+++++ .+.+...+++
T Consensus 71 ~E~~~~~~~~A~~n~~~~gl~~-----~v~~~~~Dv~ 102 (247)
T PF08704_consen 71 YEFREDRAEKARKNFERHGLDD-----NVTVHHRDVC 102 (247)
T ss_dssp EESSHHHHHHHHHHHHHTTCCT-----TEEEEES-GG
T ss_pred cccCHHHHHHHHHHHHHcCCCC-----CceeEeccee
Confidence 9876532 1335666677654 3344445554
No 6
>PF14801 GCD14_N: tRNA methyltransferase complex GCD14 subunit N-term; PDB: 1I9G_A.
Probab=97.76 E-value=4.1e-05 Score=57.36 Aligned_cols=50 Identities=24% Similarity=0.242 Sum_probs=35.9
Q ss_pred CcccCCCEEEEEecCCCeEEEEEEecCCEEEEcceeeeCCCccCCCCCcEE
Q 018481 15 QLTWEGCSVLLDINDGDRLVFARLTSGSTLKIGNKNCSLQPLIGCPFGSLF 65 (355)
Q Consensus 15 ~~I~eGd~VlL~~~~g~~~~iv~l~~~~~i~lgK~~f~l~~LIG~pyGstf 65 (355)
...++||.|.|..+.|+.+ -+.|++|+.+...+|.|..|+|||+|.|++.
T Consensus 4 Gpf~~GdrVQlTD~Kgr~~-Ti~L~~G~~fhThrG~i~HDdlIG~~eGsVV 53 (54)
T PF14801_consen 4 GPFRAGDRVQLTDPKGRKH-TITLEPGGEFHTHRGAIRHDDLIGRPEGSVV 53 (54)
T ss_dssp -S--TT-EEEEEETT--EE-EEE--TT-EEEETTEEEEHHHHTT--TTEEE
T ss_pred CCCCCCCEEEEccCCCCee-eEEECCCCeEEcCccccchhheecCCCcEEe
Confidence 3578999999999988555 8899999999999999999999999999875
No 7
>PF01135 PCMT: Protein-L-isoaspartate(D-aspartate) O-methyltransferase (PCMT); InterPro: IPR000682 Protein-L-isoaspartate(D-aspartate) O-methyltransferase (2.1.1.77 from EC) (PCMT) [] (which is also known as L-isoaspartyl protein carboxyl methyltransferase) is an enzyme that catalyses the transfer of a methyl group from S-adenosylmethionine to the free carboxyl groups of D-aspartyl or L-isoaspartyl residues in a variety of peptides and proteins. The enzyme does not act on normal L-aspartyl residues L-isoaspartyl and D-aspartyl are the products of the spontaneous deamidation and/or isomerisation of normal L-aspartyl and L-asparaginyl residues in proteins. PCMT plays a role in the repair and/or degradation of these damaged proteins; the enzymatic methyl esterification of the abnormal residues can lead to their conversion to normal L-aspartyl residues. The SAM domain is present in most of these proteins.; GO: 0004719 protein-L-isoaspartate (D-aspartate) O-methyltransferase activity, 0006464 protein modification process; PDB: 3LBF_A 1DL5_B 1JG3_B 1JG2_A 1JG1_A 1JG4_A 2YXE_A 2PBF_B 1VBF_C 1R18_A ....
Probab=96.18 E-value=0.012 Score=54.97 Aligned_cols=98 Identities=21% Similarity=0.367 Sum_probs=64.5
Q ss_pred HHHHHHHcC-CChHHHHHHHHhcccccccchhhcHHHHHHHhhhccCCcEEEeCCChHHHHHHHHhcCccccc----ccC
Q 018481 118 DIDEMRRQG-ATGEEIVEALIANSATFEKKTSFSQEKYKLKKQKKYAPKVLLRRPFARSICEAYFKKNPARIG----FLR 192 (355)
Q Consensus 118 eIe~LKk~G-~sG~eII~~LienS~tF~~KT~FSQeKYlkKK~kKy~~~ftilkPt~~~i~e~y~~KdP~KI~----~LR 192 (355)
=|+.|++.| +....|++++.+=- ...|++ +..+. .=|.-.|-.|. -..
T Consensus 5 lv~~l~~~g~v~~~~v~~A~~~Vp------------------R~~Fvp------~~~~~---~aY~d~~l~i~~~~~is~ 57 (209)
T PF01135_consen 5 LVDNLIRPGDVTDPRVLDAFRAVP------------------REDFVP------PAFRD---LAYEDRPLPIGCGQTISA 57 (209)
T ss_dssp HHHHHHHTTSS-SHHHHHHHHHS-------------------GGGCSS------CGGGG---GTTSSS-EEEETTEEE--
T ss_pred HHHHHHHcCCCCCHHHHHHHHhCC------------------HHHhCc------hhhhc---CCCCCCCeeecceeechH
Confidence 367889888 78889998886311 111111 11111 11222333232 256
Q ss_pred HhHHHHHHHhcCCCCCCeEEEEeCCCcHHHHHHHHHcCCcceEEEEecCC
Q 018481 193 VDMLSLLLSMGNVAANSDVLVVDMAGGLLTGAVAERLGGTGYVCNTCIGD 242 (355)
Q Consensus 193 ~DtLa~iLs~aNV~~g~rvLV~D~~~GLltaAv~eRmGg~G~Vi~~~~g~ 242 (355)
+...|.||.+..++||.+||.+++++|..+|.++..+|-.|+|+.+..-+
T Consensus 58 P~~~a~~l~~L~l~pg~~VLeIGtGsGY~aAlla~lvg~~g~Vv~vE~~~ 107 (209)
T PF01135_consen 58 PSMVARMLEALDLKPGDRVLEIGTGSGYQAALLAHLVGPVGRVVSVERDP 107 (209)
T ss_dssp HHHHHHHHHHTTC-TT-EEEEES-TTSHHHHHHHHHHSTTEEEEEEESBH
T ss_pred HHHHHHHHHHHhcCCCCEEEEecCCCcHHHHHHHHhcCccceEEEECccH
Confidence 88899999999999999999999999999999999999999999998644
No 8
>PRK13942 protein-L-isoaspartate O-methyltransferase; Provisional
Probab=95.45 E-value=0.095 Score=48.46 Aligned_cols=52 Identities=19% Similarity=0.269 Sum_probs=47.5
Q ss_pred cCHhHHHHHHHhcCCCCCCeEEEEeCCCcHHHHHHHHHcCCcceEEEEecCC
Q 018481 191 LRVDMLSLLLSMGNVAANSDVLVVDMAGGLLTGAVAERLGGTGYVCNTCIGD 242 (355)
Q Consensus 191 LR~DtLa~iLs~aNV~~g~rvLV~D~~~GLltaAv~eRmGg~G~Vi~~~~g~ 242 (355)
..+...+.|+.++++++|.+||.++++.|.+++.+++++|..|+|+.+....
T Consensus 60 ~~p~~~~~~~~~l~~~~g~~VLdIG~GsG~~t~~la~~~~~~~~V~~vE~~~ 111 (212)
T PRK13942 60 SAIHMVAIMCELLDLKEGMKVLEIGTGSGYHAAVVAEIVGKSGKVVTIERIP 111 (212)
T ss_pred CcHHHHHHHHHHcCCCCcCEEEEECCcccHHHHHHHHhcCCCCEEEEEeCCH
Confidence 5677889999999999999999999999999999999998889999998754
No 9
>TIGR00080 pimt protein-L-isoaspartate(D-aspartate) O-methyltransferase. Among the prokaryotes, the gene name is pcm. Among eukaryotes, pimt.
Probab=94.79 E-value=0.21 Score=45.92 Aligned_cols=100 Identities=20% Similarity=0.353 Sum_probs=68.2
Q ss_pred HHHHHHHHHcC-CChHHHHHHHHhcccccccchhhcHHHHHHHhhhccCCcEEEeCCChHHHHHHHHhcCccccc----c
Q 018481 116 GEDIDEMRRQG-ATGEEIVEALIANSATFEKKTSFSQEKYKLKKQKKYAPKVLLRRPFARSICEAYFKKNPARIG----F 190 (355)
Q Consensus 116 ~eeIe~LKk~G-~sG~eII~~LienS~tF~~KT~FSQeKYlkKK~kKy~~~ftilkPt~~~i~e~y~~KdP~KI~----~ 190 (355)
.+-|+.|++.| +....|++++..=. +..|-.+.| ..+-|...|-.+. -
T Consensus 8 ~~~v~~~~~~~~v~~~~v~~a~~~v~-----R~~f~~~~~----------------------~~~~y~d~~~~~~~~~~~ 60 (215)
T TIGR00080 8 KALIDKLINEGYIKSKRVIDALLSVP-----REEFVPEHF----------------------KEYAYVDTPLEIGYGQTI 60 (215)
T ss_pred HHHHHHHHhcCCcCCHHHHHHHHhCC-----hhhhCCchh----------------------HhhCcCCCCcccCCCCEe
Confidence 45577888887 78888888886321 112222221 1111333333221 1
Q ss_pred cCHhHHHHHHHhcCCCCCCeEEEEeCCCcHHHHHHHHHcCCcceEEEEecCC
Q 018481 191 LRVDMLSLLLSMGNVAANSDVLVVDMAGGLLTGAVAERLGGTGYVCNTCIGD 242 (355)
Q Consensus 191 LR~DtLa~iLs~aNV~~g~rvLV~D~~~GLltaAv~eRmGg~G~Vi~~~~g~ 242 (355)
..+.+.+.|+.++++.+|.+||.+.++.|.+++.++++.+-.|.|+.+....
T Consensus 61 ~~p~~~~~~~~~l~~~~~~~VLDiG~GsG~~a~~la~~~~~~g~V~~vD~~~ 112 (215)
T TIGR00080 61 SAPHMVAMMTELLELKPGMKVLEIGTGSGYQAAVLAEIVGRDGLVVSIERIP 112 (215)
T ss_pred chHHHHHHHHHHhCCCCcCEEEEECCCccHHHHHHHHHhCCCCEEEEEeCCH
Confidence 2355678999999999999999999999999999999887789999987643
No 10
>KOG1661 consensus Protein-L-isoaspartate(D-aspartate) O-methyltransferase [Posttranslational modification, protein turnover, chaperones]
Probab=94.25 E-value=0.061 Score=51.25 Aligned_cols=55 Identities=27% Similarity=0.353 Sum_probs=46.7
Q ss_pred hcCccccc-ccC---HhHHHHHHHhcC--CCCCCeEEEEeCCCcHHHHHHHHHcCCcceEE
Q 018481 182 KKNPARIG-FLR---VDMLSLLLSMGN--VAANSDVLVVDMAGGLLTGAVAERLGGTGYVC 236 (355)
Q Consensus 182 ~KdP~KI~-~LR---~DtLa~iLs~aN--V~~g~rvLV~D~~~GLltaAv~eRmGg~G~Vi 236 (355)
.--|++|+ .++ +++-|-+|-+.. .+||.++|-+++++|-|++.++.-+|+.|.+.
T Consensus 51 ~d~pq~~G~n~~iSAp~mha~~le~L~~~L~pG~s~LdvGsGSGYLt~~~~~mvg~~g~~~ 111 (237)
T KOG1661|consen 51 MDSPQKIGYNLTISAPHMHATALEYLDDHLQPGASFLDVGSGSGYLTACFARMVGATGGNV 111 (237)
T ss_pred CCCccccCCceEEcchHHHHHHHHHHHHhhccCcceeecCCCccHHHHHHHHHhcCCCccc
Confidence 34678888 665 466677888888 89999999999999999999999999999974
No 11
>COG2518 Pcm Protein-L-isoaspartate carboxylmethyltransferase [Posttranslational modification, protein turnover, chaperones]
Probab=93.78 E-value=0.14 Score=48.32 Aligned_cols=113 Identities=18% Similarity=0.282 Sum_probs=73.9
Q ss_pred HHHHHHcCCChHHHHHHHHhcccccccchhhcHHHHHHHhhhccCCcEEEeCCChHHHHHHHHhcCcccccccCHhHHHH
Q 018481 119 IDEMRRQGATGEEIVEALIANSATFEKKTSFSQEKYKLKKQKKYAPKVLLRRPFARSICEAYFKKNPARIGFLRVDMLSL 198 (355)
Q Consensus 119 Ie~LKk~G~sG~eII~~LienS~tF~~KT~FSQeKYlkKK~kKy~~~ftilkPt~~~i~e~y~~KdP~KI~~LR~DtLa~ 198 (355)
.+.|+..|+.-..+++++..= -+..|--+-| |..-|......+. ..+ .-..+...|.
T Consensus 7 ~~~lr~~~i~~~~v~~A~~~v-----PRe~FVp~~~---~~~AY~d~~lpi~-------------~gq--tis~P~~vA~ 63 (209)
T COG2518 7 VERLRTEGITDERVLKAFLAV-----PRELFVPAAY---KHLAYEDRALPIG-------------CGQ--TISAPHMVAR 63 (209)
T ss_pred HHHHHHcCCCcHHHHHHHHhC-----CHHhccCchh---hcccccCCcccCC-------------CCc--eecCcHHHHH
Confidence 457788888778888887642 2344554444 2333333322211 111 1235778999
Q ss_pred HHHhcCCCCCCeEEEEeCCCcHHHHHHHHHcCCcceEEEEecCCC--CChhhhHHhcCCCH
Q 018481 199 LLSMGNVAANSDVLVVDMAGGLLTGAVAERLGGTGYVCNTCIGDS--LYPMDIVRIFNFSN 257 (355)
Q Consensus 199 iLs~aNV~~g~rvLV~D~~~GLltaAv~eRmGg~G~Vi~~~~g~~--p~~~~~l~~~Nf~~ 257 (355)
|+.+.++++|.+||.+++++|--+|.|++..| +|+++..-.. -.+-..|+.+++..
T Consensus 64 m~~~L~~~~g~~VLEIGtGsGY~aAvla~l~~---~V~siEr~~~L~~~A~~~L~~lg~~n 121 (209)
T COG2518 64 MLQLLELKPGDRVLEIGTGSGYQAAVLARLVG---RVVSIERIEELAEQARRNLETLGYEN 121 (209)
T ss_pred HHHHhCCCCCCeEEEECCCchHHHHHHHHHhC---eEEEEEEcHHHHHHHHHHHHHcCCCc
Confidence 99999999999999999999998887776554 9999986443 11224577777743
No 12
>PRK04266 fibrillarin; Provisional
Probab=93.01 E-value=0.21 Score=47.07 Aligned_cols=49 Identities=18% Similarity=0.209 Sum_probs=41.6
Q ss_pred HhHHHHHHH---hcCCCCCCeEEEEeCCCcHHHHHHHHHcCCcceEEEEecCC
Q 018481 193 VDMLSLLLS---MGNVAANSDVLVVDMAGGLLTGAVAERLGGTGYVCNTCIGD 242 (355)
Q Consensus 193 ~DtLa~iLs---~aNV~~g~rvLV~D~~~GLltaAv~eRmGg~G~Vi~~~~g~ 242 (355)
+...+.||+ +.++++|.+||.++.+.|.++..++++++ .|+|+.+....
T Consensus 55 ~~~~~~ll~~~~~l~i~~g~~VlD~G~G~G~~~~~la~~v~-~g~V~avD~~~ 106 (226)
T PRK04266 55 SKLAAAILKGLKNFPIKKGSKVLYLGAASGTTVSHVSDIVE-EGVVYAVEFAP 106 (226)
T ss_pred cchHHHHHhhHhhCCCCCCCEEEEEccCCCHHHHHHHHhcC-CCeEEEEECCH
Confidence 444566776 68999999999999999999999999997 89999997643
No 13
>PRK13944 protein-L-isoaspartate O-methyltransferase; Provisional
Probab=93.00 E-value=0.28 Score=44.94 Aligned_cols=50 Identities=18% Similarity=0.230 Sum_probs=44.7
Q ss_pred HhHHHHHHHhcCCCCCCeEEEEeCCCcHHHHHHHHHcCCcceEEEEecCC
Q 018481 193 VDMLSLLLSMGNVAANSDVLVVDMAGGLLTGAVAERLGGTGYVCNTCIGD 242 (355)
Q Consensus 193 ~DtLa~iLs~aNV~~g~rvLV~D~~~GLltaAv~eRmGg~G~Vi~~~~g~ 242 (355)
+..++.|+.+.++++|.+||.++++.|.+++.++++++..|.|+.+....
T Consensus 58 p~~~~~~~~~l~~~~~~~VLDiG~GsG~~~~~la~~~~~~g~V~~iD~~~ 107 (205)
T PRK13944 58 PHMVAMMCELIEPRPGMKILEVGTGSGYQAAVCAEAIERRGKVYTVEIVK 107 (205)
T ss_pred HHHHHHHHHhcCCCCCCEEEEECcCccHHHHHHHHhcCCCCEEEEEeCCH
Confidence 45678899999999999999999999999999999998788999988754
No 14
>PRK13943 protein-L-isoaspartate O-methyltransferase; Provisional
Probab=91.29 E-value=0.59 Score=46.61 Aligned_cols=51 Identities=14% Similarity=0.246 Sum_probs=45.7
Q ss_pred CHhHHHHHHHhcCCCCCCeEEEEeCCCcHHHHHHHHHcCCcceEEEEecCC
Q 018481 192 RVDMLSLLLSMGNVAANSDVLVVDMAGGLLTGAVAERLGGTGYVCNTCIGD 242 (355)
Q Consensus 192 R~DtLa~iLs~aNV~~g~rvLV~D~~~GLltaAv~eRmGg~G~Vi~~~~g~ 242 (355)
.+..++.|+.++++++|.+||.+.++.|.+++.++++.+..|.|+.+....
T Consensus 65 ~p~l~a~ll~~L~i~~g~~VLDIG~GtG~~a~~LA~~~~~~g~VvgVDis~ 115 (322)
T PRK13943 65 QPSLMALFMEWVGLDKGMRVLEIGGGTGYNAAVMSRVVGEKGLVVSVEYSR 115 (322)
T ss_pred cHHHHHHHHHhcCCCCCCEEEEEeCCccHHHHHHHHhcCCCCEEEEEECCH
Confidence 477889999999999999999999999999999999988788999887644
No 15
>PLN02476 O-methyltransferase
Probab=91.11 E-value=0.41 Score=46.91 Aligned_cols=77 Identities=16% Similarity=0.059 Sum_probs=61.3
Q ss_pred HhcCcccccccCHhHHHHHHHhcCCCCCCeEEEEeCCCcHHHHHHHHHcCCcceEEEEecCCCCCh--hhhHHhcCCCH
Q 018481 181 FKKNPARIGFLRVDMLSLLLSMGNVAANSDVLVVDMAGGLLTGAVAERLGGTGYVCNTCIGDSLYP--MDIVRIFNFSN 257 (355)
Q Consensus 181 ~~KdP~KI~~LR~DtLa~iLs~aNV~~g~rvLV~D~~~GLltaAv~eRmGg~G~Vi~~~~g~~p~~--~~~l~~~Nf~~ 257 (355)
-..++..+.-+..+...+|..++.+....++|.++++.|..+.+++..|+..|+|+++........ ...++.+|+.+
T Consensus 92 a~~~~~~~~~v~~~~g~lL~~L~~~~~ak~VLEIGT~tGySal~lA~al~~~G~V~TiE~d~e~~~~Ar~n~~~aGl~~ 170 (278)
T PLN02476 92 TSKMRGSQMQVSPDQAQLLAMLVQILGAERCIEVGVYTGYSSLAVALVLPESGCLVACERDSNSLEVAKRYYELAGVSH 170 (278)
T ss_pred HHhccCCccccCHHHHHHHHHHHHhcCCCeEEEecCCCCHHHHHHHHhCCCCCEEEEEECCHHHHHHHHHHHHHcCCCC
Confidence 334433456778899888999999999999999999999999999999998999999987664322 25667778764
No 16
>PRK00312 pcm protein-L-isoaspartate O-methyltransferase; Reviewed
Probab=91.07 E-value=1.3 Score=40.43 Aligned_cols=49 Identities=12% Similarity=0.065 Sum_probs=40.8
Q ss_pred ccCHhHHHHHHHhcCCCCCCeEEEEeCCCcHHHHHHHHHcCCcceEEEEecC
Q 018481 190 FLRVDMLSLLLSMGNVAANSDVLVVDMAGGLLTGAVAERLGGTGYVCNTCIG 241 (355)
Q Consensus 190 ~LR~DtLa~iLs~aNV~~g~rvLV~D~~~GLltaAv~eRmGg~G~Vi~~~~g 241 (355)
..+++..+.|+.+++++++.+||.++++.|.++..+++. + +.|+.+...
T Consensus 61 ~~~p~~~~~l~~~l~~~~~~~VLeiG~GsG~~t~~la~~-~--~~v~~vd~~ 109 (212)
T PRK00312 61 ISQPYMVARMTELLELKPGDRVLEIGTGSGYQAAVLAHL-V--RRVFSVERI 109 (212)
T ss_pred eCcHHHHHHHHHhcCCCCCCEEEEECCCccHHHHHHHHH-h--CEEEEEeCC
Confidence 357888899999999999999999999999999877765 3 377777654
No 17
>PRK00377 cbiT cobalt-precorrin-6Y C(15)-methyltransferase; Provisional
Probab=88.14 E-value=1.7 Score=39.37 Aligned_cols=52 Identities=19% Similarity=0.182 Sum_probs=44.0
Q ss_pred cCHhHHHHHHHhcCCCCCCeEEEEeCCCcHHHHHHHHHcCCcceEEEEecCC
Q 018481 191 LRVDMLSLLLSMGNVAANSDVLVVDMAGGLLTGAVAERLGGTGYVCNTCIGD 242 (355)
Q Consensus 191 LR~DtLa~iLs~aNV~~g~rvLV~D~~~GLltaAv~eRmGg~G~Vi~~~~g~ 242 (355)
-..+.=+..|...++.+|.+||.+..+.|.++.+++.++|+.|+|+.+....
T Consensus 24 t~~~~r~~~l~~l~~~~~~~vlDlG~GtG~~s~~~a~~~~~~~~v~avD~~~ 75 (198)
T PRK00377 24 TKEEIRALALSKLRLRKGDMILDIGCGTGSVTVEASLLVGETGKVYAVDKDE 75 (198)
T ss_pred CHHHHHHHHHHHcCCCCcCEEEEeCCcCCHHHHHHHHHhCCCCEEEEEECCH
Confidence 3344456667788999999999999999999999999999889999998754
No 18
>TIGR00438 rrmJ cell division protein FtsJ.
Probab=87.68 E-value=1.6 Score=39.08 Aligned_cols=49 Identities=22% Similarity=0.288 Sum_probs=42.4
Q ss_pred hHHHHHHHhcCCCCCCeEEEEeCCCcHHHHHHHHHcCCcceEEEEecCC
Q 018481 194 DMLSLLLSMGNVAANSDVLVVDMAGGLLTGAVAERLGGTGYVCNTCIGD 242 (355)
Q Consensus 194 DtLa~iLs~aNV~~g~rvLV~D~~~GLltaAv~eRmGg~G~Vi~~~~g~ 242 (355)
..+...-.+..+++|.+||.++.+.|.++.+++.++++.|+|+.+....
T Consensus 19 ~~~~~~~~~~~i~~g~~VLDiG~GtG~~~~~l~~~~~~~~~v~~vDis~ 67 (188)
T TIGR00438 19 KLLQLNQKFKLIKPGDTVLDLGAAPGGWSQVAVEQVGGKGRVIAVDLQP 67 (188)
T ss_pred HHHHHHHHhcccCCCCEEEEecCCCCHHHHHHHHHhCCCceEEEEeccc
Confidence 4456677788999999999999999999999999998889999987654
No 19
>PLN02781 Probable caffeoyl-CoA O-methyltransferase
Probab=85.93 E-value=1.3 Score=41.87 Aligned_cols=68 Identities=15% Similarity=0.155 Sum_probs=53.3
Q ss_pred ccCHhHHHHHHHhcCCCCCCeEEEEeCCCcHHHHHHHHHcCCcceEEEEecCCCCCh--hhhHHhcCCCH
Q 018481 190 FLRVDMLSLLLSMGNVAANSDVLVVDMAGGLLTGAVAERLGGTGYVCNTCIGDSLYP--MDIVRIFNFSN 257 (355)
Q Consensus 190 ~LR~DtLa~iLs~aNV~~g~rvLV~D~~~GLltaAv~eRmGg~G~Vi~~~~g~~p~~--~~~l~~~Nf~~ 257 (355)
.+-+++..+|..++.+....++|.++++.|.-+.+++..+++.|+|+.+........ -..++..++.+
T Consensus 51 ~v~~~~g~~L~~l~~~~~~~~vLEiGt~~G~s~l~la~~~~~~g~v~tiD~d~~~~~~A~~n~~~~gl~~ 120 (234)
T PLN02781 51 EVPVDEGLFLSMLVKIMNAKNTLEIGVFTGYSLLTTALALPEDGRITAIDIDKEAYEVGLEFIKKAGVDH 120 (234)
T ss_pred ccCHHHHHHHHHHHHHhCCCEEEEecCcccHHHHHHHHhCCCCCEEEEEECCHHHHHHHHHHHHHcCCCC
Confidence 445666667777888888999999999999999999999999999999997654322 24556677764
No 20
>TIGR02469 CbiT precorrin-6Y C5,15-methyltransferase (decarboxylating), CbiT subunit. This model recognizes the CbiT methylase which is responsible, in part (along with CbiE), for methylating precorrin-6y (or cobalt-precorrin-6y) at both the 5 and 15 positions as well as the concomitant decarbozylation at C-12. In many organisms, this protein is fused to the CbiE subunit. The fused protein, when found in organisms catalyzing the oxidative version of the cobalamin biosynthesis pathway, is called CobL.
Probab=85.10 E-value=3 Score=33.55 Aligned_cols=46 Identities=17% Similarity=0.083 Sum_probs=39.0
Q ss_pred HHHHHHhcCCCCCCeEEEEeCCCcHHHHHHHHHcCCcceEEEEecCC
Q 018481 196 LSLLLSMGNVAANSDVLVVDMAGGLLTGAVAERLGGTGYVCNTCIGD 242 (355)
Q Consensus 196 La~iLs~aNV~~g~rvLV~D~~~GLltaAv~eRmGg~G~Vi~~~~g~ 242 (355)
.+.++...++.++.++|.+..+.|.++..+++++++ +.|+.+....
T Consensus 8 ~~~~~~~~~~~~~~~vldlG~G~G~~~~~l~~~~~~-~~v~~vD~s~ 53 (124)
T TIGR02469 8 RALTLSKLRLRPGDVLWDIGAGSGSITIEAARLVPN-GRVYAIERNP 53 (124)
T ss_pred HHHHHHHcCCCCCCEEEEeCCCCCHHHHHHHHHCCC-ceEEEEcCCH
Confidence 456777789999999999999999999999998866 8888887644
No 21
>COG2242 CobL Precorrin-6B methylase 2 [Coenzyme metabolism]
Probab=84.91 E-value=2 Score=40.01 Aligned_cols=62 Identities=16% Similarity=0.116 Sum_probs=50.8
Q ss_pred hHHHHHHHhcCCCCCCeEEEEeCCCcHHHHHHHHHcCCcceEEEEecCCCCChh--hhHHhcCCC
Q 018481 194 DMLSLLLSMGNVAANSDVLVVDMAGGLLTGAVAERLGGTGYVCNTCIGDSLYPM--DIVRIFNFS 256 (355)
Q Consensus 194 DtLa~iLs~aNV~~g~rvLV~D~~~GLltaAv~eRmGg~G~Vi~~~~g~~p~~~--~~l~~~Nf~ 256 (355)
|-=+..|+....++|++++-++.++|-++--++ ++|..|+||.+...+....+ .+.+.|+++
T Consensus 21 EIRal~ls~L~~~~g~~l~DIGaGtGsi~iE~a-~~~p~~~v~AIe~~~~a~~~~~~N~~~fg~~ 84 (187)
T COG2242 21 EIRALTLSKLRPRPGDRLWDIGAGTGSITIEWA-LAGPSGRVIAIERDEEALELIERNAARFGVD 84 (187)
T ss_pred HHHHHHHHhhCCCCCCEEEEeCCCccHHHHHHH-HhCCCceEEEEecCHHHHHHHHHHHHHhCCC
Confidence 334788888899999999999999999999999 99999999999976543332 556667765
No 22
>TIGR01848 PHA_reg_PhaR polyhydroxyalkanoate synthesis repressor PhaR. Poly-B-hydroxyalkanoates are lipidlike carbon/energy storage polymers found in granular inclusions. PhaR is a regulatory protein found in general near other proteins associated with polyhydroxyalkanoate (PHA) granule biosynthesis and utilization. It is found to be a DNA-binding homotetramer that is also capable of binding short chain hydroxyalkanoic acids and PHA granules. PhaR may regulate the expression of itself, of the phasins that coat granules, and of enzymes that direct carbon flux into polymers stored in granules.
Probab=84.14 E-value=3 Score=35.64 Aligned_cols=66 Identities=17% Similarity=0.264 Sum_probs=47.7
Q ss_pred CccccccCcccccCCHHHHHHHHHcCCChHHHHHHHHhcccccccchhhcHHHHHHHhhhccCCcEEEeCC------ChH
Q 018481 101 DNRAIVDDNKAQCLSGEDIDEMRRQGATGEEIVEALIANSATFEKKTSFSQEKYKLKKQKKYAPKVLLRRP------FAR 174 (355)
Q Consensus 101 dNr~i~Dd~~sQkLt~eeIe~LKk~G~sG~eII~~LienS~tF~~KT~FSQeKYlkKK~kKy~~~ftilkP------t~~ 174 (355)
.||-|.|..+++=.|-|||.+|-++| ..|.|.-. |..
T Consensus 7 ~NRRLYDT~tS~YITLedi~~lV~~g-------------------------------------~~f~V~DakTgeDiT~~ 49 (107)
T TIGR01848 7 PNRRLYDTETSSYVTLEDIRDLVREG-------------------------------------REFQVVDSKSGDDLTRS 49 (107)
T ss_pred CCCcccCCCccceeeHHHHHHHHHCC-------------------------------------CeEEEEECCCCchhHHH
Confidence 49999999999999999999999999 23343322 233
Q ss_pred HHHHHHHhcCcccccccCHhHHHHHHHhc
Q 018481 175 SICEAYFKKNPARIGFLRVDMLSLLLSMG 203 (355)
Q Consensus 175 ~i~e~y~~KdP~KI~~LR~DtLa~iLs~a 203 (355)
-|.++.+........-|-.+.|.+|+...
T Consensus 50 iL~QII~E~E~~g~~~lp~~~L~qlIr~y 78 (107)
T TIGR01848 50 ILLQIIAEEESGGEPVLSTDFLTQIIRFY 78 (107)
T ss_pred HHHHHHHHHHhCCCCCCCHHHHHHHHHHh
Confidence 33566666555555677888888887643
No 23
>PLN02589 caffeoyl-CoA O-methyltransferase
Probab=82.62 E-value=2.6 Score=40.50 Aligned_cols=71 Identities=14% Similarity=0.111 Sum_probs=54.4
Q ss_pred ccccCHhHHHHHHHhcCCCCCCeEEEEeCCCcHHHHHHHHHcCCcceEEEEecCCCCCh--hhhHHhcCCCHH
Q 018481 188 IGFLRVDMLSLLLSMGNVAANSDVLVVDMAGGLLTGAVAERLGGTGYVCNTCIGDSLYP--MDIVRIFNFSNE 258 (355)
Q Consensus 188 I~~LR~DtLa~iLs~aNV~~g~rvLV~D~~~GLltaAv~eRmGg~G~Vi~~~~g~~p~~--~~~l~~~Nf~~~ 258 (355)
++-+..++..+|..++....-.++|.++++.|.-+-++++.|+..|+|+++........ -..++..|+.+.
T Consensus 60 ~~~~~~~~g~lL~~l~~~~~ak~iLEiGT~~GySal~la~al~~~g~v~tiE~~~~~~~~Ar~~~~~ag~~~~ 132 (247)
T PLN02589 60 IMTTSADEGQFLNMLLKLINAKNTMEIGVYTGYSLLATALALPEDGKILAMDINRENYELGLPVIQKAGVAHK 132 (247)
T ss_pred CCccCHHHHHHHHHHHHHhCCCEEEEEeChhhHHHHHHHhhCCCCCEEEEEeCCHHHHHHHHHHHHHCCCCCc
Confidence 34445677777777777766789999999999999999999998999999998653222 256677787753
No 24
>TIGR02752 MenG_heptapren 2-heptaprenyl-1,4-naphthoquinone methyltransferase. MenG is a generic term for a methyltransferase that catalyzes the last step in menaquinone biosynthesis; the exact enzymatic activity differs for different MenG because the menaquinone differ in their prenoid side chains in different species. Members of this MenG protein family are 2-heptaprenyl-1,4-naphthoquinone methyltransferase, and are found together in operons with the two subunits of the heptaprenyl diphosphate synthase in Bacillus subtilis and related species.
Probab=82.21 E-value=3.4 Score=37.76 Aligned_cols=47 Identities=23% Similarity=0.128 Sum_probs=41.1
Q ss_pred HHHHHHhcCCCCCCeEEEEeCCCcHHHHHHHHHcCCcceEEEEecCC
Q 018481 196 LSLLLSMGNVAANSDVLVVDMAGGLLTGAVAERLGGTGYVCNTCIGD 242 (355)
Q Consensus 196 La~iLs~aNV~~g~rvLV~D~~~GLltaAv~eRmGg~G~Vi~~~~g~ 242 (355)
-..+|.+.++.+|.+||.++.+.|.++..++++.|..|.|+.+....
T Consensus 34 ~~~~l~~l~~~~~~~vLDiGcG~G~~~~~la~~~~~~~~v~gvD~s~ 80 (231)
T TIGR02752 34 RKDTMKRMNVQAGTSALDVCCGTADWSIALAEAVGPEGHVIGLDFSE 80 (231)
T ss_pred HHHHHHhcCCCCCCEEEEeCCCcCHHHHHHHHHhCCCCEEEEEECCH
Confidence 35577788999999999999999999999999999889999988643
No 25
>PRK00274 ksgA 16S ribosomal RNA methyltransferase KsgA/Dim1 family protein; Reviewed
Probab=80.30 E-value=6.2 Score=37.90 Aligned_cols=46 Identities=22% Similarity=0.283 Sum_probs=38.1
Q ss_pred hHHHHHHHhcCCCCCCeEEEEeCCCcHHHHHHHHHcCCcceEEEEecCC
Q 018481 194 DMLSLLLSMGNVAANSDVLVVDMAGGLLTGAVAERLGGTGYVCNTCIGD 242 (355)
Q Consensus 194 DtLa~iLs~aNV~~g~rvLV~D~~~GLltaAv~eRmGg~G~Vi~~~~g~ 242 (355)
..+..|+.++++++|.+||.++.+.|.++.+++++ ++ .|+.+....
T Consensus 29 ~i~~~i~~~l~~~~~~~VLEiG~G~G~lt~~L~~~-~~--~v~avE~d~ 74 (272)
T PRK00274 29 NILDKIVDAAGPQPGDNVLEIGPGLGALTEPLLER-AA--KVTAVEIDR 74 (272)
T ss_pred HHHHHHHHhcCCCCcCeEEEeCCCccHHHHHHHHh-CC--cEEEEECCH
Confidence 34677888889999999999999999999999998 32 777776543
No 26
>TIGR00446 nop2p NOL1/NOP2/sun family putative RNA methylase.
Probab=79.88 E-value=4.2 Score=38.87 Aligned_cols=49 Identities=14% Similarity=0.115 Sum_probs=40.1
Q ss_pred hHHHHHHH-hcCCCCCCeEEEEeCCCcHHHHHHHHHcCCcceEEEEecCC
Q 018481 194 DMLSLLLS-MGNVAANSDVLVVDMAGGLLTGAVAERLGGTGYVCNTCIGD 242 (355)
Q Consensus 194 DtLa~iLs-~aNV~~g~rvLV~D~~~GLltaAv~eRmGg~G~Vi~~~~g~ 242 (355)
|..+++.. ..++++|.+||-+..+.|-.+..++++|+..|.|+.+....
T Consensus 57 d~~s~~~~~~l~~~~g~~VLDl~ag~G~kt~~la~~~~~~g~v~a~D~~~ 106 (264)
T TIGR00446 57 EASSMIPPLALEPDPPERVLDMAAAPGGKTTQISALMKNEGAIVANEFSK 106 (264)
T ss_pred CHHHHHHHHHhCCCCcCEEEEECCCchHHHHHHHHHcCCCCEEEEEcCCH
Confidence 34555543 56899999999999999999999999999899998887644
No 27
>PRK11873 arsM arsenite S-adenosylmethyltransferase; Reviewed
Probab=79.57 E-value=3.2 Score=39.19 Aligned_cols=44 Identities=23% Similarity=0.270 Sum_probs=37.7
Q ss_pred HHHhcCCCCCCeEEEEeCCCcHHHHHHHHHcCCcceEEEEecCC
Q 018481 199 LLSMGNVAANSDVLVVDMAGGLLTGAVAERLGGTGYVCNTCIGD 242 (355)
Q Consensus 199 iLs~aNV~~g~rvLV~D~~~GLltaAv~eRmGg~G~Vi~~~~g~ 242 (355)
-+.++++.+|.+||+++.+.|+.+..++.++|..|.|+.+...+
T Consensus 69 ~~~~~~~~~g~~VLDiG~G~G~~~~~~a~~~g~~~~v~gvD~s~ 112 (272)
T PRK11873 69 PTALAELKPGETVLDLGSGGGFDCFLAARRVGPTGKVIGVDMTP 112 (272)
T ss_pred hhhhccCCCCCEEEEeCCCCCHHHHHHHHHhCCCCEEEEECCCH
Confidence 34568899999999999999998888888899889999987644
No 28
>PRK14903 16S rRNA methyltransferase B; Provisional
Probab=78.74 E-value=4.6 Score=41.65 Aligned_cols=50 Identities=22% Similarity=0.143 Sum_probs=42.0
Q ss_pred HhHHHHHHH-hcCCCCCCeEEEEeCCCcHHHHHHHHHcCCcceEEEEecCC
Q 018481 193 VDMLSLLLS-MGNVAANSDVLVVDMAGGLLTGAVAERLGGTGYVCNTCIGD 242 (355)
Q Consensus 193 ~DtLa~iLs-~aNV~~g~rvLV~D~~~GLltaAv~eRmGg~G~Vi~~~~g~ 242 (355)
.|.-+|++. +.++.+|.+||-+..+.|-.+.+++++|++.|.|+.+....
T Consensus 222 Qd~~s~~~~~~l~~~~g~~VLD~cagpGgkt~~la~~~~~~g~V~a~Dis~ 272 (431)
T PRK14903 222 QGESSQIVPLLMELEPGLRVLDTCAAPGGKTTAIAELMKDQGKILAVDISR 272 (431)
T ss_pred ECHHHHHHHHHhCCCCCCEEEEeCCCccHHHHHHHHHcCCCCEEEEEECCH
Confidence 344566654 67999999999999999999999999999999999998654
No 29
>KOG1712 consensus Adenine phosphoribosyl transferases [Nucleotide transport and metabolism]
Probab=78.26 E-value=2 Score=39.56 Aligned_cols=33 Identities=36% Similarity=0.633 Sum_probs=27.6
Q ss_pred HHhcCCCCCCeEEEEeC---CCcHHHHH--HHHHcCCc
Q 018481 200 LSMGNVAANSDVLVVDM---AGGLLTGA--VAERLGGT 232 (355)
Q Consensus 200 Ls~aNV~~g~rvLV~D~---~~GLltaA--v~eRmGg~ 232 (355)
+.-.-|.||.||+|+|+ |+|-+.|| +++|+|++
T Consensus 114 mq~~Ai~~g~rvvvVDDllATGGTl~AA~~Ll~r~ga~ 151 (183)
T KOG1712|consen 114 MQKGAIKPGQRVVVVDDLLATGGTLAAATELLERVGAE 151 (183)
T ss_pred eeccccCCCCeEEEEechhhcCccHHHHHHHHHHhccE
Confidence 35567899999999999 88988887 58999874
No 30
>PRK14901 16S rRNA methyltransferase B; Provisional
Probab=77.58 E-value=4.9 Score=41.28 Aligned_cols=64 Identities=17% Similarity=0.113 Sum_probs=47.2
Q ss_pred HhHHHHHHH-hcCCCCCCeEEEEeCCCcHHHHHHHHHcCCcceEEEEecCCCCC--hhhhHHhcCCC
Q 018481 193 VDMLSLLLS-MGNVAANSDVLVVDMAGGLLTGAVAERLGGTGYVCNTCIGDSLY--PMDIVRIFNFS 256 (355)
Q Consensus 193 ~DtLa~iLs-~aNV~~g~rvLV~D~~~GLltaAv~eRmGg~G~Vi~~~~g~~p~--~~~~l~~~Nf~ 256 (355)
.|-.++++. +.++.+|.+||-+..+.|..+..++++|++.|.|+.+.....-. ....++.+++.
T Consensus 237 qd~~s~l~~~~l~~~~g~~VLDl~ag~G~kt~~la~~~~~~g~v~a~D~~~~rl~~~~~n~~r~g~~ 303 (434)
T PRK14901 237 QDRSAQLVAPLLDPQPGEVILDACAAPGGKTTHIAELMGDQGEIWAVDRSASRLKKLQENAQRLGLK 303 (434)
T ss_pred ECHHHHHHHHHhCCCCcCEEEEeCCCCchhHHHHHHHhCCCceEEEEcCCHHHHHHHHHHHHHcCCC
Confidence 344566665 47899999999999999999999999999999999987644311 11344456654
No 31
>PRK07402 precorrin-6B methylase; Provisional
Probab=76.56 E-value=7.8 Score=34.88 Aligned_cols=50 Identities=14% Similarity=0.088 Sum_probs=39.8
Q ss_pred CHhHHHHHHHhcCCCCCCeEEEEeCCCcHHHHHHHHHcCCcceEEEEecCC
Q 018481 192 RVDMLSLLLSMGNVAANSDVLVVDMAGGLLTGAVAERLGGTGYVCNTCIGD 242 (355)
Q Consensus 192 R~DtLa~iLs~aNV~~g~rvLV~D~~~GLltaAv~eRmGg~G~Vi~~~~g~ 242 (355)
..+.-..++.+.++.+|.+||.+..+.|.++..++.+ ++.+.|+.+....
T Consensus 25 ~~~v~~~l~~~l~~~~~~~VLDiG~G~G~~~~~la~~-~~~~~V~~vD~s~ 74 (196)
T PRK07402 25 KREVRLLLISQLRLEPDSVLWDIGAGTGTIPVEAGLL-CPKGRVIAIERDE 74 (196)
T ss_pred HHHHHHHHHHhcCCCCCCEEEEeCCCCCHHHHHHHHH-CCCCEEEEEeCCH
Confidence 3444456788889999999999999999999888754 5558999888643
No 32
>PTZ00146 fibrillarin; Provisional
Probab=76.49 E-value=4 Score=40.46 Aligned_cols=40 Identities=23% Similarity=0.257 Sum_probs=36.2
Q ss_pred hcCCCCCCeEEEEeCCCcHHHHHHHHHcCCcceEEEEecC
Q 018481 202 MGNVAANSDVLVVDMAGGLLTGAVAERLGGTGYVCNTCIG 241 (355)
Q Consensus 202 ~aNV~~g~rvLV~D~~~GLltaAv~eRmGg~G~Vi~~~~g 241 (355)
..+|.+|.+||-+....|..+..+++++|..|.||.+...
T Consensus 127 ~l~IkpG~~VLDLGaG~G~~t~~lAdiVG~~G~VyAVD~s 166 (293)
T PTZ00146 127 NIPIKPGSKVLYLGAASGTTVSHVSDLVGPEGVVYAVEFS 166 (293)
T ss_pred eeccCCCCEEEEeCCcCCHHHHHHHHHhCCCCEEEEEECc
Confidence 3468999999999999999999999999999999999753
No 33
>PRK08317 hypothetical protein; Provisional
Probab=75.34 E-value=7.5 Score=34.77 Aligned_cols=45 Identities=22% Similarity=0.194 Sum_probs=39.0
Q ss_pred HHHHHhcCCCCCCeEEEEeCCCcHHHHHHHHHcCCcceEEEEecC
Q 018481 197 SLLLSMGNVAANSDVLVVDMAGGLLTGAVAERLGGTGYVCNTCIG 241 (355)
Q Consensus 197 a~iLs~aNV~~g~rvLV~D~~~GLltaAv~eRmGg~G~Vi~~~~g 241 (355)
..++.+.++.++.+||.++.+.|.++..+++++|..+.|+.+...
T Consensus 9 ~~~~~~~~~~~~~~vLdiG~G~G~~~~~~a~~~~~~~~v~~~d~~ 53 (241)
T PRK08317 9 ARTFELLAVQPGDRVLDVGCGPGNDARELARRVGPEGRVVGIDRS 53 (241)
T ss_pred HHHHHHcCCCCCCEEEEeCCCCCHHHHHHHHhcCCCcEEEEEeCC
Confidence 456778899999999999999999999999999877888887753
No 34
>PF01596 Methyltransf_3: O-methyltransferase; InterPro: IPR002935 Members of this family are O-methyltransferases. The family includes also bacterial O-methyltransferases that may be involved in antibiotic production [].; GO: 0008171 O-methyltransferase activity; PDB: 1SUI_C 1SUS_D 3CBG_A 2GPY_B 3TR6_A 2AVD_A 3DUL_B 3DUW_B 2ZTH_A 1VID_A ....
Probab=75.17 E-value=2.6 Score=39.30 Aligned_cols=70 Identities=16% Similarity=0.068 Sum_probs=49.9
Q ss_pred ccccCHhHHHHHHHhcCCCCCCeEEEEeCCCcHHHHHHHHHcCCcceEEEEecCCCCC--hhhhHHhcCCCH
Q 018481 188 IGFLRVDMLSLLLSMGNVAANSDVLVVDMAGGLLTGAVAERLGGTGYVCNTCIGDSLY--PMDIVRIFNFSN 257 (355)
Q Consensus 188 I~~LR~DtLa~iLs~aNV~~g~rvLV~D~~~GLltaAv~eRmGg~G~Vi~~~~g~~p~--~~~~l~~~Nf~~ 257 (355)
.+.+..++-..|-.++....-.+||+++++.|.-+.++|+.|...|+|+++.....-. +-..++..++.+
T Consensus 26 ~~~i~~~~g~lL~~l~~~~~~k~vLEIGt~~GySal~la~~l~~~g~i~tiE~~~~~~~~A~~~~~~ag~~~ 97 (205)
T PF01596_consen 26 QMSISPETGQLLQMLVRLTRPKRVLEIGTFTGYSALWLAEALPEDGKITTIEIDPERAEIARENFRKAGLDD 97 (205)
T ss_dssp GGSHHHHHHHHHHHHHHHHT-SEEEEESTTTSHHHHHHHHTSTTTSEEEEEESSHHHHHHHHHHHHHTTGGG
T ss_pred CCccCHHHHHHHHHHHHhcCCceEEEeccccccHHHHHHHhhcccceEEEecCcHHHHHHHHHHHHhcCCCC
Confidence 3444555555555555555557999999999999999999999899999999765321 225566777754
No 35
>PRK11188 rrmJ 23S rRNA methyltransferase J; Provisional
Probab=74.69 E-value=9.7 Score=35.23 Aligned_cols=46 Identities=15% Similarity=0.110 Sum_probs=38.1
Q ss_pred HHHHHhcC-CCCCCeEEEEeCCCcHHHHHHHHHcCCcceEEEEecCC
Q 018481 197 SLLLSMGN-VAANSDVLVVDMAGGLLTGAVAERLGGTGYVCNTCIGD 242 (355)
Q Consensus 197 a~iLs~aN-V~~g~rvLV~D~~~GLltaAv~eRmGg~G~Vi~~~~g~ 242 (355)
-.|+..-+ +.+|.+||.++.+.|.++-.+++++|..|.|+.+...+
T Consensus 40 ~~~~~~~~~~~~~~~VLDlG~GtG~~t~~l~~~~~~~~~V~aVDi~~ 86 (209)
T PRK11188 40 DEIQQSDKLFKPGMTVVDLGAAPGGWSQYAVTQIGDKGRVIACDILP 86 (209)
T ss_pred HHHHHHhccCCCCCEEEEEcccCCHHHHHHHHHcCCCceEEEEeccc
Confidence 34444444 58899999999999999999999999899999998754
No 36
>PF07879 PHB_acc_N: PHB/PHA accumulation regulator DNA-binding domain; InterPro: IPR012909 This domain is found at the N terminus of the polyhydroxyalkanoate (PHA) synthesis regulators. These regulators have been shown to directly bind DNA and PHA []. The invariant nature of this domain compared to the C-terminal IPR007897 from INTERPRO domain(s) suggests that it contains the DNA-binding function.
Probab=73.18 E-value=3.3 Score=32.42 Aligned_cols=36 Identities=33% Similarity=0.613 Sum_probs=30.3
Q ss_pred CccccccCcccccCCHHHHHHHHHcC--------CChHHHHHHH
Q 018481 101 DNRAIVDDNKAQCLSGEDIDEMRRQG--------ATGEEIVEAL 136 (355)
Q Consensus 101 dNr~i~Dd~~sQkLt~eeIe~LKk~G--------~sG~eII~~L 136 (355)
-||-|.|..+++=+|-++|.+|-++| .+|++|=..+
T Consensus 7 ~NRRLYDT~~s~YiTL~di~~lV~~g~~~~V~D~ktgeDiT~~i 50 (64)
T PF07879_consen 7 PNRRLYDTETSSYITLEDIAQLVREGEDFKVVDAKTGEDITRSI 50 (64)
T ss_pred CCCccccCCCceeEeHHHHHHHHHCCCeEEEEECCCCcccHHHH
Confidence 49999999999999999999999999 3576665443
No 37
>PRK00107 gidB 16S rRNA methyltransferase GidB; Reviewed
Probab=73.15 E-value=22 Score=32.57 Aligned_cols=76 Identities=17% Similarity=-0.069 Sum_probs=48.6
Q ss_pred HHHHHHhhhccCCcEEEeCCChHHHHHHHHhcCcccccccCHhHHHHHHHhcCCCCCCeEEEEeCCCcHHHHHHHHHcCC
Q 018481 152 EKYKLKKQKKYAPKVLLRRPFARSICEAYFKKNPARIGFLRVDMLSLLLSMGNVAANSDVLVVDMAGGLLTGAVAERLGG 231 (355)
Q Consensus 152 eKYlkKK~kKy~~~ftilkPt~~~i~e~y~~KdP~KI~~LR~DtLa~iLs~aNV~~g~rvLV~D~~~GLltaAv~eRmGg 231 (355)
++|+.==+++.-..=.+-.++...+...++- |+ ++....+.+|.++|.++++.|.++.+++.+. +
T Consensus 4 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-----------d~---l~l~~~l~~g~~VLDiGcGtG~~al~la~~~-~ 68 (187)
T PRK00107 4 EAYVELLVKWNKKYNLTAIRDPEELWERHIL-----------DS---LAIAPYLPGGERVLDVGSGAGFPGIPLAIAR-P 68 (187)
T ss_pred HHHHHHHHHhcccccccccCCHHHHHHHHHH-----------HH---HHHHhhcCCCCeEEEEcCCCCHHHHHHHHHC-C
Confidence 3554433333333333445677776665552 22 2333456679999999999999999988754 4
Q ss_pred cceEEEEecCC
Q 018481 232 TGYVCNTCIGD 242 (355)
Q Consensus 232 ~G~Vi~~~~g~ 242 (355)
.++|+.+....
T Consensus 69 ~~~V~giD~s~ 79 (187)
T PRK00107 69 ELKVTLVDSLG 79 (187)
T ss_pred CCeEEEEeCcH
Confidence 57888887654
No 38
>PRK08287 cobalt-precorrin-6Y C(15)-methyltransferase; Validated
Probab=73.14 E-value=13 Score=33.22 Aligned_cols=51 Identities=14% Similarity=0.019 Sum_probs=40.6
Q ss_pred CHhHHHHHHHhcCCCCCCeEEEEeCCCcHHHHHHHHHcCCcceEEEEecCCC
Q 018481 192 RVDMLSLLLSMGNVAANSDVLVVDMAGGLLTGAVAERLGGTGYVCNTCIGDS 243 (355)
Q Consensus 192 R~DtLa~iLs~aNV~~g~rvLV~D~~~GLltaAv~eRmGg~G~Vi~~~~g~~ 243 (355)
..+.-+.++.+..+.++.++|.++++.|.++.+++.+ ++.++|+.+.....
T Consensus 16 ~~~~r~~~~~~l~~~~~~~vLDiG~G~G~~~~~la~~-~~~~~v~~vD~s~~ 66 (187)
T PRK08287 16 KEEVRALALSKLELHRAKHLIDVGAGTGSVSIEAALQ-FPSLQVTAIERNPD 66 (187)
T ss_pred hHHHHHHHHHhcCCCCCCEEEEECCcCCHHHHHHHHH-CCCCEEEEEECCHH
Confidence 3444556677788899999999999999999999877 45688988887543
No 39
>PLN02233 ubiquinone biosynthesis methyltransferase
Probab=72.66 E-value=8.5 Score=36.72 Aligned_cols=44 Identities=20% Similarity=0.221 Sum_probs=38.1
Q ss_pred HHHhcCCCCCCeEEEEeCCCcHHHHHHHHHcCCcceEEEEecCC
Q 018481 199 LLSMGNVAANSDVLVVDMAGGLLTGAVAERLGGTGYVCNTCIGD 242 (355)
Q Consensus 199 iLs~aNV~~g~rvLV~D~~~GLltaAv~eRmGg~G~Vi~~~~g~ 242 (355)
++.+.++.++.+||.+..+.|.++..+++++|..|.|+.+....
T Consensus 65 ~~~~~~~~~~~~VLDlGcGtG~~~~~la~~~~~~~~V~gvD~S~ 108 (261)
T PLN02233 65 AVSWSGAKMGDRVLDLCCGSGDLAFLLSEKVGSDGKVMGLDFSS 108 (261)
T ss_pred HHHHhCCCCCCEEEEECCcCCHHHHHHHHHhCCCCEEEEEECCH
Confidence 34567889999999999999999999999999889999988643
No 40
>KOG0024 consensus Sorbitol dehydrogenase [Secondary metabolites biosynthesis, transport and catabolism]
Probab=71.50 E-value=6.7 Score=39.83 Aligned_cols=56 Identities=29% Similarity=0.360 Sum_probs=44.1
Q ss_pred HHhcCCCCCCeEEEEeCC-CcHHHHHHHHHcCCcceEEEEecCCCCChhhhHHhcCCCHH
Q 018481 200 LSMGNVAANSDVLVVDMA-GGLLTGAVAERLGGTGYVCNTCIGDSLYPMDIVRIFNFSNE 258 (355)
Q Consensus 200 Ls~aNV~~g~rvLV~D~~-~GLltaAv~eRmGg~G~Vi~~~~g~~p~~~~~l~~~Nf~~~ 258 (355)
...|||++|++|||++.+ =||+++.+|..||-. .|+-... .+..++..+.|++..-
T Consensus 162 cr~~~vk~Gs~vLV~GAGPIGl~t~l~Aka~GA~-~VVi~d~--~~~Rle~Ak~~Ga~~~ 218 (354)
T KOG0024|consen 162 CRRAGVKKGSKVLVLGAGPIGLLTGLVAKAMGAS-DVVITDL--VANRLELAKKFGATVT 218 (354)
T ss_pred hhhcCcccCCeEEEECCcHHHHHHHHHHHHcCCC-cEEEeec--CHHHHHHHHHhCCeEE
Confidence 348999999999999996 499999999999764 5555544 3457888888888743
No 41
>PRK11933 yebU rRNA (cytosine-C(5)-)-methyltransferase RsmF; Reviewed
Probab=70.23 E-value=9.8 Score=40.03 Aligned_cols=61 Identities=20% Similarity=0.088 Sum_probs=44.9
Q ss_pred HHHHHH-hc--CCCCCCeEEEEeCCCcHHHHHHHHHcCCcceEEEEecCCCCCh--hhhHHhcCCC
Q 018481 196 LSLLLS-MG--NVAANSDVLVVDMAGGLLTGAVAERLGGTGYVCNTCIGDSLYP--MDIVRIFNFS 256 (355)
Q Consensus 196 La~iLs-~a--NV~~g~rvLV~D~~~GLltaAv~eRmGg~G~Vi~~~~g~~p~~--~~~l~~~Nf~ 256 (355)
-||+.. .. ++.+|.+||-+-..-|--|..++++|++.|.|+.......-.. ...++.++++
T Consensus 99 sS~l~~~~L~~~~~pg~~VLD~CAAPGgKTt~la~~l~~~g~lvA~D~~~~R~~~L~~nl~r~G~~ 164 (470)
T PRK11933 99 SSMLPVAALFADDNAPQRVLDMAAAPGSKTTQIAALMNNQGAIVANEYSASRVKVLHANISRCGVS 164 (470)
T ss_pred HHHHHHHHhccCCCCCCEEEEeCCCccHHHHHHHHHcCCCCEEEEEeCCHHHHHHHHHHHHHcCCC
Confidence 466644 34 8899999888888889999999999999999998876543111 1445556654
No 42
>PRK14103 trans-aconitate 2-methyltransferase; Provisional
Probab=69.79 E-value=11 Score=35.30 Aligned_cols=53 Identities=17% Similarity=0.011 Sum_probs=42.6
Q ss_pred ccccCHhHHHHHHHhcCCCCCCeEEEEeCCCcHHHHHHHHHcCCcceEEEEecC
Q 018481 188 IGFLRVDMLSLLLSMGNVAANSDVLVVDMAGGLLTGAVAERLGGTGYVCNTCIG 241 (355)
Q Consensus 188 I~~LR~DtLa~iLs~aNV~~g~rvLV~D~~~GLltaAv~eRmGg~G~Vi~~~~g 241 (355)
..+.|...+.-+|...+..++.+||.++.+.|.++..++++. ..+.|+.+...
T Consensus 10 ~~~~~~~~~~~ll~~l~~~~~~~vLDlGcG~G~~~~~l~~~~-p~~~v~gvD~s 62 (255)
T PRK14103 10 FADHRGRPFYDLLARVGAERARRVVDLGCGPGNLTRYLARRW-PGAVIEALDSS 62 (255)
T ss_pred HHhHhhCHHHHHHHhCCCCCCCEEEEEcCCCCHHHHHHHHHC-CCCEEEEEECC
Confidence 345565667778888899999999999999999999999986 34678777753
No 43
>PRK10901 16S rRNA methyltransferase B; Provisional
Probab=69.48 E-value=11 Score=38.56 Aligned_cols=48 Identities=21% Similarity=0.052 Sum_probs=38.9
Q ss_pred hHHHHHH-HhcCCCCCCeEEEEeCCCcHHHHHHHHHcCCcceEEEEecCC
Q 018481 194 DMLSLLL-SMGNVAANSDVLVVDMAGGLLTGAVAERLGGTGYVCNTCIGD 242 (355)
Q Consensus 194 DtLa~iL-s~aNV~~g~rvLV~D~~~GLltaAv~eRmGg~G~Vi~~~~g~ 242 (355)
|.-|++. .+.++.+|.+||.+..+.|.++..+++++++ |.|+.+....
T Consensus 230 d~~s~~~~~~l~~~~g~~VLDlgaG~G~~t~~la~~~~~-~~v~a~D~s~ 278 (427)
T PRK10901 230 DAAAQLAATLLAPQNGERVLDACAAPGGKTAHILELAPQ-AQVVALDIDA 278 (427)
T ss_pred CHHHHHHHHHcCCCCCCEEEEeCCCCChHHHHHHHHcCC-CEEEEEeCCH
Confidence 3344444 3778999999999999999999999999876 8998887644
No 44
>COG4798 Predicted methyltransferase [General function prediction only]
Probab=69.44 E-value=3.7 Score=39.13 Aligned_cols=47 Identities=17% Similarity=0.258 Sum_probs=44.2
Q ss_pred HHHHHhcCCCCCCeEEEEeCCCcHHHHHHHHHcCCcceEEEEecCCC
Q 018481 197 SLLLSMGNVAANSDVLVVDMAGGLLTGAVAERLGGTGYVCNTCIGDS 243 (355)
Q Consensus 197 a~iLs~aNV~~g~rvLV~D~~~GLltaAv~eRmGg~G~Vi~~~~g~~ 243 (355)
+.+|.+++++||..|+.+=-++|-.|.-++--+|.+|+|+.+-+.+.
T Consensus 38 ~E~L~FaGlkpg~tVid~~PGgGy~TrI~s~~vgp~G~Vy~~~p~e~ 84 (238)
T COG4798 38 GEVLAFAGLKPGATVIDLIPGGGYFTRIFSPAVGPKGKVYAYVPAEL 84 (238)
T ss_pred cceeEEeccCCCCEEEEEecCCccHhhhhchhcCCceeEEEecchhh
Confidence 78999999999999999999999999999999999999999987765
No 45
>TIGR00138 gidB 16S rRNA methyltransferase GidB. GidB (glucose-inhibited division protein B) appears to be present and in a single copy in nearly all complete eubacterial genomes. It is missing only from some obligate intracellular species of various lineages (Chlamydiae, Ehrlichia, Wolbachia, Anaplasma, Buchnera, etc.). GidB shows a methytransferase fold in its the crystal structure, and acts as a 7-methylguanosine (m(7)G) methyltransferase, apparently specific to 16S rRNA.
Probab=69.13 E-value=12 Score=33.91 Aligned_cols=38 Identities=8% Similarity=-0.069 Sum_probs=29.9
Q ss_pred cCCCCCCeEEEEeCCCcHHHHHHHHHcCCcceEEEEecCC
Q 018481 203 GNVAANSDVLVVDMAGGLLTGAVAERLGGTGYVCNTCIGD 242 (355)
Q Consensus 203 aNV~~g~rvLV~D~~~GLltaAv~eRmGg~G~Vi~~~~g~ 242 (355)
..+. |.++|.++++.|.++..++ ++++.+.|+.+....
T Consensus 39 ~~~~-~~~vLDiGcGtG~~s~~la-~~~~~~~V~~iD~s~ 76 (181)
T TIGR00138 39 EYLD-GKKVIDIGSGAGFPGIPLA-IARPELKLTLLESNH 76 (181)
T ss_pred HhcC-CCeEEEecCCCCccHHHHH-HHCCCCeEEEEeCcH
Confidence 3443 8999999999998888887 466678898887644
No 46
>COG4122 Predicted O-methyltransferase [General function prediction only]
Probab=68.96 E-value=16 Score=34.83 Aligned_cols=66 Identities=12% Similarity=0.053 Sum_probs=55.0
Q ss_pred HhHHHHHHHhcCCCCCCeEEEEeCCCcHHHHHHHHHcCCcceEEEEecCCCCC--hhhhHHhcCCCHH
Q 018481 193 VDMLSLLLSMGNVAANSDVLVVDMAGGLLTGAVAERLGGTGYVCNTCIGDSLY--PMDIVRIFNFSNE 258 (355)
Q Consensus 193 ~DtLa~iLs~aNV~~g~rvLV~D~~~GLltaAv~eRmGg~G~Vi~~~~g~~p~--~~~~l~~~Nf~~~ 258 (355)
+++-..|..++-.....++|.+++..|.-+.+||.-|..+|+|+++...+.-. +...++..++.+.
T Consensus 45 ~e~g~~L~~L~~~~~~k~iLEiGT~~GySal~mA~~l~~~g~l~tiE~~~e~~~~A~~n~~~ag~~~~ 112 (219)
T COG4122 45 PETGALLRLLARLSGPKRILEIGTAIGYSALWMALALPDDGRLTTIERDEERAEIARENLAEAGVDDR 112 (219)
T ss_pred hhHHHHHHHHHHhcCCceEEEeecccCHHHHHHHhhCCCCCeEEEEeCCHHHHHHHHHHHHHcCCcce
Confidence 77778888888888899999999999999999999999999999999876422 2366777777765
No 47
>PF01209 Ubie_methyltran: ubiE/COQ5 methyltransferase family; InterPro: IPR004033 A number of methyltransferases have been shown to share regions of similarities []. Apart from the ubiquinone/menaquinone biosynthesis methyltransferases (for example, the C-methyltransferase from the ubiE gene of Escherichia coli), the ubiquinone biosynthesis methyltransferases (for example, the C-methyltransferase from the COQ5 gene of Saccharomyces cerevisiae) and the menaquinone biosynthesis methyltransferases (for example, the C-methyltransferase from the MENH gene of Bacillus subtilis), this family also includes methyltransferases involved in biotin and sterol biosynthesis and in phosphatidylethanolamine methylation.; GO: 0008168 methyltransferase activity; PDB: 1VL5_C.
Probab=68.18 E-value=7 Score=37.02 Aligned_cols=44 Identities=27% Similarity=0.344 Sum_probs=30.3
Q ss_pred HHHhcCCCCCCeEEEEeCCCcHHHHHHHHHcCCcceEEEEecCC
Q 018481 199 LLSMGNVAANSDVLVVDMAGGLLTGAVAERLGGTGYVCNTCIGD 242 (355)
Q Consensus 199 iLs~aNV~~g~rvLV~D~~~GLltaAv~eRmGg~G~Vi~~~~g~ 242 (355)
++...+.++|.+||-+.++.|.++-.+++++|..|.|+.+....
T Consensus 39 ~~~~~~~~~g~~vLDv~~GtG~~~~~l~~~~~~~~~v~~vD~s~ 82 (233)
T PF01209_consen 39 LIKLLGLRPGDRVLDVACGTGDVTRELARRVGPNGKVVGVDISP 82 (233)
T ss_dssp HHHHHT--S--EEEEET-TTSHHHHHHGGGSS---EEEEEES-H
T ss_pred HHhccCCCCCCEEEEeCCChHHHHHHHHHHCCCccEEEEecCCH
Confidence 44456889999999999999999999999999999999997543
No 48
>PRK14902 16S rRNA methyltransferase B; Provisional
Probab=65.87 E-value=14 Score=37.99 Aligned_cols=47 Identities=30% Similarity=0.210 Sum_probs=39.6
Q ss_pred HHHHHH-hcCCCCCCeEEEEeCCCcHHHHHHHHHcCCcceEEEEecCC
Q 018481 196 LSLLLS-MGNVAANSDVLVVDMAGGLLTGAVAERLGGTGYVCNTCIGD 242 (355)
Q Consensus 196 La~iLs-~aNV~~g~rvLV~D~~~GLltaAv~eRmGg~G~Vi~~~~g~ 242 (355)
-++++. +.++.+|.+||-+..+.|..+.++++++++.|.|+.+....
T Consensus 238 ~s~lv~~~l~~~~g~~VLDlgaG~G~~t~~la~~~~~~~~v~avDi~~ 285 (444)
T PRK14902 238 SSMLVAPALDPKGGDTVLDACAAPGGKTTHIAELLKNTGKVVALDIHE 285 (444)
T ss_pred HHHHHHHHhCCCCCCEEEEeCCCCCHHHHHHHHHhCCCCEEEEEeCCH
Confidence 344443 67899999999999999999999999998889999998654
No 49
>PF00398 RrnaAD: Ribosomal RNA adenine dimethylase; InterPro: IPR001737 This family of proteins include rRNA adenine dimethylases (e.g. KsgA) and the Erythromycin resistance methylases (Erm). The bacterial enzyme KsgA catalyses the transfer of a total of four methyl groups from S-adenosyl-l-methionine (S-AdoMet) to two adjacent adenosine bases in 16S rRNA. This enzyme and the resulting modified adenosine bases appear to be conserved in all species of eubacteria, eukaryotes, and archaea, and in eukaryotic organelles. Bacterial resistance to the aminoglycoside antibiotic kasugamycin involves inactivation of KsgA and resulting loss of the dimethylations, with modest consequences to the overall fitness of the organism. In contrast, the yeast ortholog, Dim1, is essential. In Saccharomyces cerevisiae (Baker's yeast), and presumably in other eukaryotes, the enzyme performs a vital role in pre-rRNA processing in addition to its methylating activity. The best conserved region in these enzymes is located in the N-terminal section and corresponds to a region that is probably involved in S-adenosyl methionine (SAM) binding domain. The crystal structure of KsgA from Escherichia coli has been solved to a resolution of 2.1A. It bears a strong similarity to the crystal structure of ErmC' from Bacillus stearothermophilus and a lesser similarity to the yeast mitochondrial transcription factor, sc-mtTFB []. The Erm family of RNA methyltransferases, which methylate a single adenosine base in 23S rRNA confer resistance to the MLS-B group of antibiotics. Despite their sequence similarity, the two enzyme families have strikingly different levels of regulation that remain to be elucidated. Other orthologs, of this family include the yeast and Homo sapiens (Human) mitochondrial transcription factors (MTF1 and h-mtTFB respectively), which are nuclear encoded []. Human-mtTFB is able to stimulate transcription in vitro independently of its S-adenosylmethionine binding and rRNA methyltransferase activity [].; GO: 0000179 rRNA (adenine-N6,N6-)-dimethyltransferase activity, 0008649 rRNA methyltransferase activity, 0000154 rRNA modification; PDB: 3FTF_A 3R9X_B 3FTE_A 3FTC_A 3FTD_A 3GRY_A 3FYC_A 3GRU_A 3FYD_A 3GRV_A ....
Probab=63.50 E-value=14 Score=35.20 Aligned_cols=59 Identities=19% Similarity=0.220 Sum_probs=45.2
Q ss_pred HhhhccCCcEEEeCCChHHHHHHHHhcCcccccccCHhHHHHHHHhcCCCCCCeEEEEeCCCcHHHHHHHHHcCCcceEE
Q 018481 157 KKQKKYAPKVLLRRPFARSICEAYFKKNPARIGFLRVDMLSLLLSMGNVAANSDVLVVDMAGGLLTGAVAERLGGTGYVC 236 (355)
Q Consensus 157 KK~kKy~~~ftilkPt~~~i~e~y~~KdP~KI~~LR~DtLa~iLs~aNV~~g~rvLV~D~~~GLltaAv~eRmGg~G~Vi 236 (355)
|.+|+|...|.+- ...+-.|+..+++.++..||.++-+-|.+|.+++++. ..|+
T Consensus 3 k~kk~~gQnFL~~-----------------------~~~~~~Iv~~~~~~~~~~VlEiGpG~G~lT~~L~~~~---~~v~ 56 (262)
T PF00398_consen 3 KPKKSLGQNFLVD-----------------------PNIADKIVDALDLSEGDTVLEIGPGPGALTRELLKRG---KRVI 56 (262)
T ss_dssp SC-CGCTSSEEEH-----------------------HHHHHHHHHHHTCGTTSEEEEESSTTSCCHHHHHHHS---SEEE
T ss_pred CCCCCCCcCeeCC-----------------------HHHHHHHHHhcCCCCCCEEEEeCCCCccchhhHhccc---Ccce
Confidence 5567777777763 2334567777788899999999999999999999987 6777
Q ss_pred EEecC
Q 018481 237 NTCIG 241 (355)
Q Consensus 237 ~~~~g 241 (355)
.+...
T Consensus 57 ~vE~d 61 (262)
T PF00398_consen 57 AVEID 61 (262)
T ss_dssp EEESS
T ss_pred eecCc
Confidence 77653
No 50
>smart00105 ArfGap Putative GTP-ase activating proteins for the small GTPase, ARF. Putative zinc fingers with GTPase activating proteins (GAPs) towards the small GTPase, Arf. The GAP of ARD1 stimulates GTPase hydrolysis for ARD1 but not ARFs.
Probab=62.28 E-value=6.9 Score=32.96 Aligned_cols=47 Identities=21% Similarity=0.304 Sum_probs=31.8
Q ss_pred ccCCHHHHHHHHHcCCC-hHHHHHHHHhcc-------cccccchhhcHHHHHHHh
Q 018481 112 QCLSGEDIDEMRRQGAT-GEEIVEALIANS-------ATFEKKTSFSQEKYKLKK 158 (355)
Q Consensus 112 QkLt~eeIe~LKk~G~s-G~eII~~LienS-------~tF~~KT~FSQeKYlkKK 158 (355)
.+.+.++|+.|+..|.. ..++-++..... ..-..++.|-++||..|+
T Consensus 49 d~w~~~~i~~~~~~GN~~~n~~~e~~~~~~~~~~~~~~~~~~~~~fI~~KY~~k~ 103 (112)
T smart00105 49 DTWTEEELRLLQKGGNENANSIWESNLDDFSLKPPDSDDQQKYESFIAAKYEEKL 103 (112)
T ss_pred CCCCHHHHHHHHHhhhHHHHHHHHhhCCccccCCCCCchHHHHHHHHHHHHHhhh
Confidence 36889999999977742 455555554322 235677888888887765
No 51
>PF02353 CMAS: Mycolic acid cyclopropane synthetase; InterPro: IPR003333 This entry represents mycolic acid cyclopropane synthases and related enzymes, including CmaA1, CmaA2 (cyclopropane mycolic acid synthase A1 and A2) and MmaA1-4 (methoxymycolic acid synthase A1-4). All are thought to be S-adenosyl-L-methionine (SAM) utilising methyltransferases []. Mycolic acid cyclopropane synthase or cyclopropane-fatty-acyl-phospholipid synthase (CFA synthase) 2.1.1.79 from EC catalyses the reaction: S-adenosyl-L-methionine + phospholipid olefinic fatty acid -> S-adenosyl-L-homocysteine + phospholipid cyclopropane fatty acid. The major mycolic acid produced by Mycobacterium tuberculosis contains two cis-cyclopropanes in the meromycolate chain. Cyclopropanation may contribute to the structural integrity of the cell wall complex [].; GO: 0008610 lipid biosynthetic process; PDB: 3HA5_A 2FK8_A 3HA7_A 3HA3_A 2FK7_A 1KPG_D 1KP9_B 1KPH_D 3VC2_E 3VC1_D ....
Probab=62.08 E-value=11 Score=36.56 Aligned_cols=42 Identities=29% Similarity=0.230 Sum_probs=30.3
Q ss_pred HHHHHHhcCCCCCCeEEEEeCCCcHHHHHHHHHcCCcceEEEEe
Q 018481 196 LSLLLSMGNVAANSDVLVVDMAGGLLTGAVAERLGGTGYVCNTC 239 (355)
Q Consensus 196 La~iLs~aNV~~g~rvLV~D~~~GLltaAv~eRmGg~G~Vi~~~ 239 (355)
+-.|+..++|+||.+||.++.+-|-++-.+++|-|.. |..+-
T Consensus 51 ~~~~~~~~~l~~G~~vLDiGcGwG~~~~~~a~~~g~~--v~git 92 (273)
T PF02353_consen 51 LDLLCEKLGLKPGDRVLDIGCGWGGLAIYAAERYGCH--VTGIT 92 (273)
T ss_dssp HHHHHTTTT--TT-EEEEES-TTSHHHHHHHHHH--E--EEEEE
T ss_pred HHHHHHHhCCCCCCEEEEeCCCccHHHHHHHHHcCcE--EEEEE
Confidence 5678899999999999999999999999999998654 44444
No 52
>PRK14904 16S rRNA methyltransferase B; Provisional
Probab=61.56 E-value=17 Score=37.41 Aligned_cols=48 Identities=21% Similarity=0.056 Sum_probs=40.0
Q ss_pred HHHHHHhcCCCCCCeEEEEeCCCcHHHHHHHHHcCCcceEEEEecCCC
Q 018481 196 LSLLLSMGNVAANSDVLVVDMAGGLLTGAVAERLGGTGYVCNTCIGDS 243 (355)
Q Consensus 196 La~iLs~aNV~~g~rvLV~D~~~GLltaAv~eRmGg~G~Vi~~~~g~~ 243 (355)
-.+...+.++.+|.+||.+..+.|-.+..+++++++.|.|+.+.....
T Consensus 239 s~l~~~~l~~~~g~~VLDlgaG~G~kt~~la~~~~~~~~V~avD~s~~ 286 (445)
T PRK14904 239 QALACLLLNPQPGSTVLDLCAAPGGKSTFMAELMQNRGQITAVDRYPQ 286 (445)
T ss_pred HHHHHHhcCCCCCCEEEEECCCCCHHHHHHHHHhCCCcEEEEEECCHH
Confidence 334445778899999999999999999999999998899999876543
No 53
>PF01269 Fibrillarin: Fibrillarin; InterPro: IPR000692 Fibrillarin is a component of a nucleolar small nuclear ribonucleoprotein (SnRNP), functioning in vivo in ribosomal RNA processing [, ]. It is associated with U3, U8 and U13 small nuclear RNAs in mammals [] and is similar to the yeast NOP1 protein []. Fibrillarin has a well conserved sequence of around 320 amino acids, and contains 3 domains, an N-terminal Gly/Arg-rich region; a central domain resembling other RNA-binding proteins and containing an RNP-2-like consensus sequence; and a C-terminal alpha-helical domain. An evolutionarily related pre-rRNA processing protein, which lacks the Gly/Arg-rich domain, has been found in various archaebacteria.; GO: 0003723 RNA binding, 0008168 methyltransferase activity, 0006364 rRNA processing, 0008033 tRNA processing; PDB: 3PLA_E 3ID6_C 3ID5_B 1NT2_A 3NVK_J 2NNW_B 3NVM_B 3NMU_J 1PRY_A 1G8A_A ....
Probab=61.04 E-value=13 Score=35.71 Aligned_cols=39 Identities=23% Similarity=0.313 Sum_probs=33.5
Q ss_pred CCCCCCeEEEEeCCCcHHHHHHHHHcCCcceEEEEecCC
Q 018481 204 NVAANSDVLVVDMAGGLLTGAVAERLGGTGYVCNTCIGD 242 (355)
Q Consensus 204 NV~~g~rvLV~D~~~GLltaAv~eRmGg~G~Vi~~~~g~ 242 (355)
.|++|++||-.+.++|--+.-|+.-+|.+|.||.+.-..
T Consensus 70 ~ik~gskVLYLGAasGTTVSHvSDIvg~~G~VYaVEfs~ 108 (229)
T PF01269_consen 70 PIKPGSKVLYLGAASGTTVSHVSDIVGPDGVVYAVEFSP 108 (229)
T ss_dssp S--TT-EEEEETTTTSHHHHHHHHHHTTTSEEEEEESSH
T ss_pred CCCCCCEEEEecccCCCccchhhhccCCCCcEEEEEecc
Confidence 578999999999999999999999999999999998644
No 54
>TIGR00563 rsmB ribosomal RNA small subunit methyltransferase RsmB. The seed alignment is built from bacterial sequences only. Eukaryotic homologs include Nop2, a protein required for processing pre-rRNA, that is likely also a rRNA methyltransferase, although the fine specificity may differ. Cutoff scores are set to avoid treating archaeal and eukaroytic homologs automatically as functionally equivalent, although they may have very similar roles.
Probab=59.97 E-value=22 Score=36.41 Aligned_cols=60 Identities=12% Similarity=0.016 Sum_probs=43.9
Q ss_pred HHHHHH-hcCCCCCCeEEEEeCCCcHHHHHHHHHcCCcceEEEEecCCCCCh--hhhHHhcCCC
Q 018481 196 LSLLLS-MGNVAANSDVLVVDMAGGLLTGAVAERLGGTGYVCNTCIGDSLYP--MDIVRIFNFS 256 (355)
Q Consensus 196 La~iLs-~aNV~~g~rvLV~D~~~GLltaAv~eRmGg~G~Vi~~~~g~~p~~--~~~l~~~Nf~ 256 (355)
-++++. +.++.+|.+||.+..+.|-.+..++++++ .|+|+.+........ -..++.++++
T Consensus 226 ~s~~~~~~L~~~~g~~VLDlcag~G~kt~~la~~~~-~~~v~a~D~~~~~l~~~~~n~~r~g~~ 288 (426)
T TIGR00563 226 SAQWVATWLAPQNEETILDACAAPGGKTTHILELAP-QAQVVALDIHEHRLKRVYENLKRLGLT 288 (426)
T ss_pred HHHHHHHHhCCCCCCeEEEeCCCccHHHHHHHHHcC-CCeEEEEeCCHHHHHHHHHHHHHcCCC
Confidence 344444 57999999999999999999999999997 789999876543211 1344555654
No 55
>PRK14967 putative methyltransferase; Provisional
Probab=59.90 E-value=22 Score=32.76 Aligned_cols=46 Identities=26% Similarity=0.284 Sum_probs=36.1
Q ss_pred HHHHHHHhcCCCCCCeEEEEeCCCcHHHHHHHHHcCCcceEEEEecCC
Q 018481 195 MLSLLLSMGNVAANSDVLVVDMAGGLLTGAVAERLGGTGYVCNTCIGD 242 (355)
Q Consensus 195 tLa~iLs~aNV~~g~rvLV~D~~~GLltaAv~eRmGg~G~Vi~~~~g~ 242 (355)
.|+.+|...++.+|.++|.+..+.|.++..++.+ |.+.|+.+....
T Consensus 24 ~l~~~l~~~~~~~~~~vLDlGcG~G~~~~~la~~--~~~~v~~vD~s~ 69 (223)
T PRK14967 24 LLADALAAEGLGPGRRVLDLCTGSGALAVAAAAA--GAGSVTAVDISR 69 (223)
T ss_pred HHHHHHHhcccCCCCeEEEecCCHHHHHHHHHHc--CCCeEEEEECCH
Confidence 4666677778999999999999999998888764 346888887643
No 56
>smart00650 rADc Ribosomal RNA adenine dimethylases.
Probab=57.84 E-value=26 Score=30.79 Aligned_cols=43 Identities=23% Similarity=0.281 Sum_probs=36.6
Q ss_pred HHHHHhcCCCCCCeEEEEeCCCcHHHHHHHHHcCCcceEEEEecCC
Q 018481 197 SLLLSMGNVAANSDVLVVDMAGGLLTGAVAERLGGTGYVCNTCIGD 242 (355)
Q Consensus 197 a~iLs~aNV~~g~rvLV~D~~~GLltaAv~eRmGg~G~Vi~~~~g~ 242 (355)
-.|+..+++.+|.++|.++.+.|.++..+++| + +.|+.+....
T Consensus 3 ~~i~~~~~~~~~~~vLEiG~G~G~lt~~l~~~-~--~~v~~vE~~~ 45 (169)
T smart00650 3 DKIVRAANLRPGDTVLEIGPGKGALTEELLER-A--ARVTAIEIDP 45 (169)
T ss_pred HHHHHhcCCCCcCEEEEECCCccHHHHHHHhc-C--CeEEEEECCH
Confidence 46777889999999999999999999999999 3 5788777653
No 57
>PRK14896 ksgA 16S ribosomal RNA methyltransferase KsgA/Dim1 family protein; Provisional
Probab=57.84 E-value=29 Score=32.94 Aligned_cols=45 Identities=18% Similarity=0.239 Sum_probs=36.7
Q ss_pred hHHHHHHHhcCCCCCCeEEEEeCCCcHHHHHHHHHcCCcceEEEEecC
Q 018481 194 DMLSLLLSMGNVAANSDVLVVDMAGGLLTGAVAERLGGTGYVCNTCIG 241 (355)
Q Consensus 194 DtLa~iLs~aNV~~g~rvLV~D~~~GLltaAv~eRmGg~G~Vi~~~~g 241 (355)
..+..|+..+++.+|.+||.++.+.|.++..++++ + +.|+.+...
T Consensus 16 ~~~~~iv~~~~~~~~~~VLEIG~G~G~lt~~L~~~-~--~~v~~vEid 60 (258)
T PRK14896 16 RVVDRIVEYAEDTDGDPVLEIGPGKGALTDELAKR-A--KKVYAIELD 60 (258)
T ss_pred HHHHHHHHhcCCCCcCeEEEEeCccCHHHHHHHHh-C--CEEEEEECC
Confidence 34566777788999999999999999999999998 3 467777654
No 58
>TIGR00755 ksgA dimethyladenosine transferase. Alternate name: S-adenosylmethionine--6-N',N'-adenosyl (rRNA) dimethyltransferase
Probab=56.90 E-value=28 Score=32.78 Aligned_cols=44 Identities=23% Similarity=0.233 Sum_probs=36.5
Q ss_pred hHHHHHHHhcCCCCCCeEEEEeCCCcHHHHHHHHHcCCcceEEEEec
Q 018481 194 DMLSLLLSMGNVAANSDVLVVDMAGGLLTGAVAERLGGTGYVCNTCI 240 (355)
Q Consensus 194 DtLa~iLs~aNV~~g~rvLV~D~~~GLltaAv~eRmGg~G~Vi~~~~ 240 (355)
..+..|+..+++.++.+||.++.+.|.++.+++++.. .|+.+..
T Consensus 16 ~i~~~i~~~~~~~~~~~VLEiG~G~G~lt~~L~~~~~---~v~~iE~ 59 (253)
T TIGR00755 16 SVIQKIVEAANVLEGDVVLEIGPGLGALTEPLLKRAK---KVTAIEI 59 (253)
T ss_pred HHHHHHHHhcCCCCcCEEEEeCCCCCHHHHHHHHhCC---cEEEEEC
Confidence 4567788888999999999999999999999999852 4666654
No 59
>COG0075 Serine-pyruvate aminotransferase/archaeal aspartate aminotransferase [Amino acid transport and metabolism]
Probab=56.60 E-value=75 Score=32.82 Aligned_cols=60 Identities=22% Similarity=0.292 Sum_probs=46.5
Q ss_pred HHHHHHHhcCC-CCCCeEEEEeCC-CcHHHHHHHHHcCCcceEEEEecCCCCChhhhHHhcC
Q 018481 195 MLSLLLSMGNV-AANSDVLVVDMA-GGLLTGAVAERLGGTGYVCNTCIGDSLYPMDIVRIFN 254 (355)
Q Consensus 195 tLa~iLs~aNV-~~g~rvLV~D~~-~GLltaAv~eRmGg~G~Vi~~~~g~~p~~~~~l~~~N 254 (355)
|+|+--+.+|+ .||+||||+..+ -|---+=+++|.|.+=.++....|..+..-++-+.+.
T Consensus 66 t~amEAav~sl~~pgdkVLv~~nG~FG~R~~~ia~~~g~~v~~~~~~wg~~v~p~~v~~~L~ 127 (383)
T COG0075 66 TLAMEAAVASLVEPGDKVLVVVNGKFGERFAEIAERYGAEVVVLEVEWGEAVDPEEVEEALD 127 (383)
T ss_pred HHHHHHHHHhccCCCCeEEEEeCChHHHHHHHHHHHhCCceEEEeCCCCCCCCHHHHHHHHh
Confidence 46777777776 579999999996 4888999999999999999999988653323434444
No 60
>COG2226 UbiE Methylase involved in ubiquinone/menaquinone biosynthesis [Coenzyme metabolism]
Probab=56.18 E-value=22 Score=34.23 Aligned_cols=42 Identities=26% Similarity=0.328 Sum_probs=36.3
Q ss_pred HHhcCCCCCCeEEEEeCCCcHHHHHHHHHcCCcceEEEEecCC
Q 018481 200 LSMGNVAANSDVLVVDMAGGLLTGAVAERLGGTGYVCNTCIGD 242 (355)
Q Consensus 200 Ls~aNV~~g~rvLV~D~~~GLltaAv~eRmGg~G~Vi~~~~g~ 242 (355)
..+.++++|.+||-+..+.|-++-.++++.| .|.|+.+...+
T Consensus 44 i~~~~~~~g~~vLDva~GTGd~a~~~~k~~g-~g~v~~~D~s~ 85 (238)
T COG2226 44 ISLLGIKPGDKVLDVACGTGDMALLLAKSVG-TGEVVGLDISE 85 (238)
T ss_pred HHhhCCCCCCEEEEecCCccHHHHHHHHhcC-CceEEEEECCH
Confidence 3445677999999999999999999999998 99999997543
No 61
>TIGR00537 hemK_rel_arch HemK-related putative methylase. The gene hemK from E. coli was found to contribute to heme biosynthesis and originally suggested to be protoporphyrinogen oxidase (Medline 95189105). Functional analysis of the nearest homolog in Saccharomyces cerevisiae, YNL063w, finds it is not protoporphyrinogen oxidase and sequence analysis suggests that HemK homologs have S-adenosyl-methionine-dependent methyltransferase activity (Medline 99237242). Homologs are found, usually in a single copy, in nearly all completed genomes, but varying somewhat in apparent domain architecture. This model represents an archaeal and eukaryotic protein family that lacks an N-terminal domain found in HemK and its eubacterial homologs. It is found in a single copy in the first six completed archaeal and eukaryotic genomes.
Probab=55.36 E-value=22 Score=31.45 Aligned_cols=47 Identities=23% Similarity=0.202 Sum_probs=35.7
Q ss_pred CHhHHHHHHHhcCCCCCCeEEEEeCCCcHHHHHHHHHcCCcceEEEEecCC
Q 018481 192 RVDMLSLLLSMGNVAANSDVLVVDMAGGLLTGAVAERLGGTGYVCNTCIGD 242 (355)
Q Consensus 192 R~DtLa~iLs~aNV~~g~rvLV~D~~~GLltaAv~eRmGg~G~Vi~~~~g~ 242 (355)
|.|| .+|+...+..++.++|.++.+.|.++-+++++ |. .|+.+....
T Consensus 5 ~~d~-~~l~~~l~~~~~~~vLdlG~G~G~~~~~l~~~-~~--~v~~vD~s~ 51 (179)
T TIGR00537 5 AEDS-LLLEANLRELKPDDVLEIGAGTGLVAIRLKGK-GK--CILTTDINP 51 (179)
T ss_pred CccH-HHHHHHHHhcCCCeEEEeCCChhHHHHHHHhc-CC--EEEEEECCH
Confidence 5677 55556667778899999999999999998886 32 677776543
No 62
>PRK06201 hypothetical protein; Validated
Probab=54.46 E-value=28 Score=32.91 Aligned_cols=53 Identities=28% Similarity=0.390 Sum_probs=39.0
Q ss_pred HHhcCCCCCCeEEEEeCCC-------cHHHHHHHHHcCCcceEEEEecCCCCChhhhHHhcCCCH
Q 018481 200 LSMGNVAANSDVLVVDMAG-------GLLTGAVAERLGGTGYVCNTCIGDSLYPMDIVRIFNFSN 257 (355)
Q Consensus 200 Ls~aNV~~g~rvLV~D~~~-------GLltaAv~eRmGg~G~Vi~~~~g~~p~~~~~l~~~Nf~~ 257 (355)
-.+..+.||. |||+|..+ |=+.+..+.+.|-.|.|+.-...|. +.++.++||-
T Consensus 72 ~ai~~~~pG~-VlVid~~g~~~~a~~G~~~a~~a~~~G~~G~VidG~vRD~----~~i~~~~fPv 131 (221)
T PRK06201 72 RALDLARPGD-VIVVDGGGDLTNALVGEIMLAIAARRGVAGVVIDGAVRDV----AALREMGFPV 131 (221)
T ss_pred HHHhccCCCc-EEEEECCCCCCccchhHHHHHHHHHCCCeEEEEeeccCCH----HHHhhCCCCe
Confidence 3455677866 88888632 5566777788899999988777665 4678999984
No 63
>PRK01683 trans-aconitate 2-methyltransferase; Provisional
Probab=51.89 E-value=32 Score=32.05 Aligned_cols=46 Identities=15% Similarity=0.018 Sum_probs=38.0
Q ss_pred HHHHHHHhcCCCCCCeEEEEeCCCcHHHHHHHHHcCCcceEEEEecC
Q 018481 195 MLSLLLSMGNVAANSDVLVVDMAGGLLTGAVAERLGGTGYVCNTCIG 241 (355)
Q Consensus 195 tLa~iLs~aNV~~g~rvLV~D~~~GLltaAv~eRmGg~G~Vi~~~~g 241 (355)
....+|....+.++.+||.++.+.|.++..++++. +.+.|+.+...
T Consensus 19 ~~~~ll~~~~~~~~~~vLDiGcG~G~~~~~la~~~-~~~~v~gvD~s 64 (258)
T PRK01683 19 PARDLLARVPLENPRYVVDLGCGPGNSTELLVERW-PAARITGIDSS 64 (258)
T ss_pred HHHHHHhhCCCcCCCEEEEEcccCCHHHHHHHHHC-CCCEEEEEECC
Confidence 35677788888999999999999999999999886 34688887753
No 64
>PRK11705 cyclopropane fatty acyl phospholipid synthase; Provisional
Probab=51.63 E-value=32 Score=34.97 Aligned_cols=44 Identities=25% Similarity=0.211 Sum_probs=36.4
Q ss_pred HHHHHHhcCCCCCCeEEEEeCCCcHHHHHHHHHcCCcceEEEEecC
Q 018481 196 LSLLLSMGNVAANSDVLVVDMAGGLLTGAVAERLGGTGYVCNTCIG 241 (355)
Q Consensus 196 La~iLs~aNV~~g~rvLV~D~~~GLltaAv~eRmGg~G~Vi~~~~g 241 (355)
+..|+...++++|.+||.++.+.|.++..++++.|. .|+.+...
T Consensus 156 ~~~l~~~l~l~~g~rVLDIGcG~G~~a~~la~~~g~--~V~giDlS 199 (383)
T PRK11705 156 LDLICRKLQLKPGMRVLDIGCGWGGLARYAAEHYGV--SVVGVTIS 199 (383)
T ss_pred HHHHHHHhCCCCCCEEEEeCCCccHHHHHHHHHCCC--EEEEEeCC
Confidence 567888889999999999999999999999988754 67666543
No 65
>TIGR01744 XPRTase xanthine phosphoribosyltransferase. This model represent a xanthine-specific phosphoribosyltransferase of Bacillus subtilis and closely related proteins from other species, mostly from other Gram-positive bacteria. The adjacent gene is a xanthine transporter; B. subtilis can import xanthine for the purine salvage pathway or for catabolism to obtain nitrogen.
Probab=51.00 E-value=43 Score=30.91 Aligned_cols=51 Identities=16% Similarity=0.182 Sum_probs=32.0
Q ss_pred CCCCCeEEEEeC---CCcHHHHH--HHHHcCC--cceEEEEecCCCCChhhhHHhcCCC
Q 018481 205 VAANSDVLVVDM---AGGLLTGA--VAERLGG--TGYVCNTCIGDSLYPMDIVRIFNFS 256 (355)
Q Consensus 205 V~~g~rvLV~D~---~~GLltaA--v~eRmGg--~G~Vi~~~~g~~p~~~~~l~~~Nf~ 256 (355)
+.+|.|||++|+ ++|-+.++ ++++.|+ .|.++.+...... ....++.+|+|
T Consensus 114 l~~G~rVLIVDDvvtTGgT~~a~~~ll~~aGa~Vvgv~~lvd~~~~~-g~~~l~~~gvp 171 (191)
T TIGR01744 114 LSDQDRVLIIDDFLANGQAAHGLVDIAKQAGAKIAGIGIVIEKSFQN-GRQELVELGYR 171 (191)
T ss_pred CCCcCEEEEEEehhccChHHHHHHHHHHHCCCEEEEEEEEEEecCcc-HHHHHHhcCCc
Confidence 579999999999 56655444 5677776 3666666654321 22445555554
No 66
>PTZ00338 dimethyladenosine transferase-like protein; Provisional
Probab=49.42 E-value=42 Score=33.04 Aligned_cols=44 Identities=18% Similarity=0.169 Sum_probs=36.6
Q ss_pred hHHHHHHHhcCCCCCCeEEEEeCCCcHHHHHHHHHcCCcceEEEEec
Q 018481 194 DMLSLLLSMGNVAANSDVLVVDMAGGLLTGAVAERLGGTGYVCNTCI 240 (355)
Q Consensus 194 DtLa~iLs~aNV~~g~rvLV~D~~~GLltaAv~eRmGg~G~Vi~~~~ 240 (355)
..+..|+..+++.+|.+||.++.+.|.+|.+++++ + +.|+.+..
T Consensus 23 ~i~~~Iv~~~~~~~~~~VLEIG~G~G~LT~~Ll~~-~--~~V~avEi 66 (294)
T PTZ00338 23 LVLDKIVEKAAIKPTDTVLEIGPGTGNLTEKLLQL-A--KKVIAIEI 66 (294)
T ss_pred HHHHHHHHhcCCCCcCEEEEecCchHHHHHHHHHh-C--CcEEEEEC
Confidence 45678888899999999999999999999999997 2 35666654
No 67
>KOG0820 consensus Ribosomal RNA adenine dimethylase [RNA processing and modification]
Probab=47.60 E-value=31 Score=34.49 Aligned_cols=45 Identities=18% Similarity=0.093 Sum_probs=38.2
Q ss_pred CHhHHHHHHHhcCCCCCCeEEEEeCCCcHHHHHHHHHcCCcceEEEEe
Q 018481 192 RVDMLSLLLSMGNVAANSDVLVVDMAGGLLTGAVAERLGGTGYVCNTC 239 (355)
Q Consensus 192 R~DtLa~iLs~aNV~~g~rvLV~D~~~GLltaAv~eRmGg~G~Vi~~~ 239 (355)
+++++.+|..-|.++|+.-||.++-+-|-||-+++|.- -+|+.+.
T Consensus 43 Np~v~~~I~~ka~~k~tD~VLEvGPGTGnLT~~lLe~~---kkVvA~E 87 (315)
T KOG0820|consen 43 NPLVIDQIVEKADLKPTDVVLEVGPGTGNLTVKLLEAG---KKVVAVE 87 (315)
T ss_pred CHHHHHHHHhccCCCCCCEEEEeCCCCCHHHHHHHHhc---CeEEEEe
Confidence 36899999999999999999999999999999999862 2455444
No 68
>PRK15451 tRNA cmo(5)U34 methyltransferase; Provisional
Probab=45.62 E-value=60 Score=30.45 Aligned_cols=37 Identities=14% Similarity=0.046 Sum_probs=30.5
Q ss_pred CCCCCeEEEEeCCCcHHHHHHHHHcC-CcceEEEEecC
Q 018481 205 VAANSDVLVVDMAGGLLTGAVAERLG-GTGYVCNTCIG 241 (355)
Q Consensus 205 V~~g~rvLV~D~~~GLltaAv~eRmG-g~G~Vi~~~~g 241 (355)
+.++++||.++.+.|.++.++++++. ..+.|+.+...
T Consensus 54 ~~~~~~vLDlGcGtG~~~~~l~~~~~~~~~~v~gvD~S 91 (247)
T PRK15451 54 VQPGTQVYDLGCSLGAATLSVRRNIHHDNCKIIAIDNS 91 (247)
T ss_pred CCCCCEEEEEcccCCHHHHHHHHhcCCCCCeEEEEeCC
Confidence 57899999999999999999998864 56788777753
No 69
>TIGR01934 MenG_MenH_UbiE ubiquinone/menaquinone biosynthesis methyltransferases. Note that a number of non-orthologous genes which are members of pfam03737 have been erroneously annotated as MenG methyltransferases.
Probab=45.07 E-value=73 Score=28.25 Aligned_cols=45 Identities=20% Similarity=0.120 Sum_probs=35.4
Q ss_pred HHHHHhcCCCCCCeEEEEeCCCcHHHHHHHHHcCCcceEEEEecC
Q 018481 197 SLLLSMGNVAANSDVLVVDMAGGLLTGAVAERLGGTGYVCNTCIG 241 (355)
Q Consensus 197 a~iLs~aNV~~g~rvLV~D~~~GLltaAv~eRmGg~G~Vi~~~~g 241 (355)
..++.+....++.+||.++.+.|.++..++.+.+..+.++.+...
T Consensus 29 ~~~~~~~~~~~~~~vldiG~G~G~~~~~~~~~~~~~~~~~~iD~~ 73 (223)
T TIGR01934 29 RRAVKLIGVFKGQKVLDVACGTGDLAIELAKSAPDRGKVTGVDFS 73 (223)
T ss_pred HHHHHHhccCCCCeEEEeCCCCChhHHHHHHhcCCCceEEEEECC
Confidence 445555556689999999999999999999988655777777754
No 70
>PF12847 Methyltransf_18: Methyltransferase domain; PDB: 3G2Q_A 3G2O_A 3G2M_B 3G2P_B 3D2L_B 1IM8_B 3NJR_A 3E05_H 3EVZ_A 3HM2_A ....
Probab=44.88 E-value=36 Score=26.96 Aligned_cols=33 Identities=24% Similarity=0.189 Sum_probs=27.3
Q ss_pred CCCeEEEEeCCCcHHHHHHHHHcCCcceEEEEec
Q 018481 207 ANSDVLVVDMAGGLLTGAVAERLGGTGYVCNTCI 240 (355)
Q Consensus 207 ~g~rvLV~D~~~GLltaAv~eRmGg~G~Vi~~~~ 240 (355)
||.+||.++.+.|.++.+++++- ...+|+.+..
T Consensus 1 p~~~vLDlGcG~G~~~~~l~~~~-~~~~v~gvD~ 33 (112)
T PF12847_consen 1 PGGRVLDLGCGTGRLSIALARLF-PGARVVGVDI 33 (112)
T ss_dssp TTCEEEEETTTTSHHHHHHHHHH-TTSEEEEEES
T ss_pred CCCEEEEEcCcCCHHHHHHHhcC-CCCEEEEEeC
Confidence 68999999999999999999843 3456888875
No 71
>cd01445 TST_Repeats Thiosulfate sulfurtransferases (TST) contain 2 copies of the Rhodanese Homology Domain. Only the second repeat contains the catalytically active Cys residue. The role of the 1st repeat is uncertain, but believed to be involved in protein interaction. This CD aligns the 1st and 2nd repeats.
Probab=43.65 E-value=51 Score=28.50 Aligned_cols=39 Identities=13% Similarity=0.238 Sum_probs=29.8
Q ss_pred HhHHHHHHHhcCCCCCCeEEEEeCC--CcH---HHHHHHHHcCC
Q 018481 193 VDMLSLLLSMGNVAANSDVLVVDMA--GGL---LTGAVAERLGG 231 (355)
Q Consensus 193 ~DtLa~iLs~aNV~~g~rvLV~D~~--~GL---ltaAv~eRmGg 231 (355)
.+.|..+|...+|.++..|+++|.. +|. .++.+++.+|-
T Consensus 80 ~~~~~~~~~~~GI~~~~~vVvY~~~~~~g~~A~r~~~~l~~~G~ 123 (138)
T cd01445 80 EAEFAAMFEAKGIDLDKHLIATDGDDLGGFTACHIALAARLCGH 123 (138)
T ss_pred HHHHHHHHHHcCCCCCCeEEEECCCCCcchHHHHHHHHHHHcCC
Confidence 3578999999999999999999964 454 44556766663
No 72
>cd08230 glucose_DH Glucose dehydrogenase. Glucose dehydrogenase (GlcDH), a member of the medium chain dehydrogenase/zinc-dependent alcohol dehydrogenase-like family, catalyzes the NADP(+)-dependent oxidation of glucose to gluconate, the first step in the Entner-Doudoroff pathway, an alternative to or substitute for glycolysis or the pentose phosphate pathway. The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P) binding-Rossman fold domain of a beta-alpha form and an N-terminal catalytic domain with distant homology to GroES. The MDR group contai
Probab=42.95 E-value=62 Score=31.45 Aligned_cols=53 Identities=21% Similarity=0.049 Sum_probs=37.0
Q ss_pred hcCCCCCCeEEEEeCCC-cHHHHHHHHHcCCcceEEEEecCC-CCChhhhHHhcCCC
Q 018481 202 MGNVAANSDVLVVDMAG-GLLTGAVAERLGGTGYVCNTCIGD-SLYPMDIVRIFNFS 256 (355)
Q Consensus 202 ~aNV~~g~rvLV~D~~~-GLltaAv~eRmGg~G~Vi~~~~g~-~p~~~~~l~~~Nf~ 256 (355)
.+++.+|.+|||+..++ |++++.+|..+|- .|+.+...+ .+..++.++.++..
T Consensus 167 ~~~~~~g~~vlI~G~G~vG~~a~q~ak~~G~--~vi~~~~~~~~~~~~~~~~~~Ga~ 221 (355)
T cd08230 167 RLPTWNPRRALVLGAGPIGLLAALLLRLRGF--EVYVLNRRDPPDPKADIVEELGAT 221 (355)
T ss_pred hcccCCCCEEEEECCCHHHHHHHHHHHHcCC--eEEEEecCCCCHHHHHHHHHcCCE
Confidence 34578999999998632 7888889998876 466655432 35566677777653
No 73
>PRK00216 ubiE ubiquinone/menaquinone biosynthesis methyltransferase; Reviewed
Probab=42.66 E-value=74 Score=28.56 Aligned_cols=48 Identities=23% Similarity=0.151 Sum_probs=38.0
Q ss_pred hHHHHHHHhcCCCCCCeEEEEeCCCcHHHHHHHHHcCCcceEEEEecC
Q 018481 194 DMLSLLLSMGNVAANSDVLVVDMAGGLLTGAVAERLGGTGYVCNTCIG 241 (355)
Q Consensus 194 DtLa~iLs~aNV~~g~rvLV~D~~~GLltaAv~eRmGg~G~Vi~~~~g 241 (355)
.....++....+.++.++|.++.+.|.++..++.+.+..+.|+.+...
T Consensus 38 ~~~~~~~~~~~~~~~~~vldiG~G~G~~~~~l~~~~~~~~~v~~~D~s 85 (239)
T PRK00216 38 VWRRKTIKWLGVRPGDKVLDLACGTGDLAIALAKAVGKTGEVVGLDFS 85 (239)
T ss_pred HHHHHHHHHhCCCCCCeEEEeCCCCCHHHHHHHHHcCCCCeEEEEeCC
Confidence 345566777778889999999999999999999987546777777653
No 74
>PRK09219 xanthine phosphoribosyltransferase; Validated
Probab=41.73 E-value=76 Score=29.28 Aligned_cols=52 Identities=15% Similarity=0.155 Sum_probs=31.5
Q ss_pred CCCCCCeEEEEeC---CCcHHHHH--HHHHcCC--cceEEEEecCCCCChhhhHHhcCCC
Q 018481 204 NVAANSDVLVVDM---AGGLLTGA--VAERLGG--TGYVCNTCIGDSLYPMDIVRIFNFS 256 (355)
Q Consensus 204 NV~~g~rvLV~D~---~~GLltaA--v~eRmGg--~G~Vi~~~~g~~p~~~~~l~~~Nf~ 256 (355)
.+.+|.|||++|+ ++|-+.++ ++++.|+ -|.++.+..+... ....+...|++
T Consensus 113 ~i~~G~rVlIVDDviaTGgT~~a~~~lv~~aGa~vvgv~~lvd~~~~~-g~~~l~~~g~~ 171 (189)
T PRK09219 113 FLSEGDRVLIIDDFLANGQAALGLIDIIEQAGAKVAGIGIVIEKSFQD-GRKLLEEKGYR 171 (189)
T ss_pred hCCCCCEEEEEeehhhcChHHHHHHHHHHHCCCEEEEEEEEEEccCcc-HHHHHHhcCCc
Confidence 3579999999999 56655443 5666676 4666666554221 12344555554
No 75
>PRK14968 putative methyltransferase; Provisional
Probab=41.61 E-value=58 Score=28.22 Aligned_cols=41 Identities=24% Similarity=0.238 Sum_probs=31.2
Q ss_pred HHHHhcCCCCCCeEEEEeCCCcHHHHHHHHHcCCcceEEEEecC
Q 018481 198 LLLSMGNVAANSDVLVVDMAGGLLTGAVAERLGGTGYVCNTCIG 241 (355)
Q Consensus 198 ~iLs~aNV~~g~rvLV~D~~~GLltaAv~eRmGg~G~Vi~~~~g 241 (355)
+|+.+..+.+|.++|.++.+.|.++..++++ + ..|+.+...
T Consensus 14 ~l~~~~~~~~~~~vLd~G~G~G~~~~~l~~~-~--~~v~~~D~s 54 (188)
T PRK14968 14 LLAENAVDKKGDRVLEVGTGSGIVAIVAAKN-G--KKVVGVDIN 54 (188)
T ss_pred HHHHhhhccCCCEEEEEccccCHHHHHHHhh-c--ceEEEEECC
Confidence 3444445578999999999999999999998 3 567766643
No 76
>cd08238 sorbose_phosphate_red L-sorbose-1-phosphate reductase. L-sorbose-1-phosphate reductase, a member of the MDR family, catalyzes the NADPH-dependent conversion of l-sorbose 1-phosphate to d-glucitol 6-phosphate in the metabolism of L-sorbose to (also converts d-fructose 1-phosphate to d-mannitol 6-phosphate). The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P) binding-Rossmann fold domain of an beta-alpha form and an N-terminal catalytic domain with distant homology to GroES. The MDR group contains a host of activities, including the found
Probab=41.43 E-value=45 Score=33.45 Aligned_cols=40 Identities=15% Similarity=0.105 Sum_probs=30.7
Q ss_pred hcCCCCCCeEEEEeCC--CcHHHHHHHHHcC-CcceEEEEecC
Q 018481 202 MGNVAANSDVLVVDMA--GGLLTGAVAERLG-GTGYVCNTCIG 241 (355)
Q Consensus 202 ~aNV~~g~rvLV~D~~--~GLltaAv~eRmG-g~G~Vi~~~~g 241 (355)
.+++++|.+|||+..+ -|+++..+|..+| |-..|+.+...
T Consensus 170 ~~~~~~g~~VlV~G~~G~vG~~aiq~ak~~G~g~~~Vi~~~~~ 212 (410)
T cd08238 170 RMGIKPGGNTAILGGAGPMGLMAIDYAIHGPIGPSLLVVTDVN 212 (410)
T ss_pred hcCCCCCCEEEEEeCCCHHHHHHHHHHHhcccCCceEEEEcCC
Confidence 4789999999999854 4888888888887 55677776543
No 77
>TIGR03754 conj_TOL_TraD conjugative coupling factor TraD, TOL family. Members of this protein are assigned by homology to the TraD family of conjugative coupling factor. This particular clade serves as a marker for an extended gene region that occurs occasionally on plasmids, including the toluene catabolism TOL plasmid. More commonly, the gene region is chromosomal, flanked by various markers of conjugative transfer and insertion.
Probab=41.16 E-value=52 Score=36.23 Aligned_cols=70 Identities=21% Similarity=0.172 Sum_probs=53.9
Q ss_pred HHHHHHhcCCCCCCeEEEEeCCCcH----HHHHHHHHcCCcceEEEEecCCC--CChhhhHHhcCCCHHHHhheee
Q 018481 196 LSLLLSMGNVAANSDVLVVDMAGGL----LTGAVAERLGGTGYVCNTCIGDS--LYPMDIVRIFNFSNEICKSIVR 265 (355)
Q Consensus 196 La~iLs~aNV~~g~rvLV~D~~~GL----ltaAv~eRmGg~G~Vi~~~~g~~--p~~~~~l~~~Nf~~~~~~~i~~ 265 (355)
|..+|....++.|..|+++|--++. -..+++.|.|-.-..+.+|.+.. +..++.|..++-++|+-++|..
T Consensus 196 l~~~li~q~i~~g~~vi~fDpkgD~el~~~~~~~~~~~GR~~~f~~~~~~~P~~S~~~Npl~n~~~~~EvasrI~~ 271 (643)
T TIGR03754 196 LAELLITQDIRRGDVVIVFDPKGDADLLKRMYAEAKRAGRLDEFYVFHLGWPEISARYNAIGNFGRISEVATRITG 271 (643)
T ss_pred HHHHHHHHHHHcCCeEEEEeCCCCHHHHHHHHHHHHHhCCCCceEEecCCCCccccccChhhccCChHHHHHHHHH
Confidence 4445666677889999999998886 56677888888888999998763 3355778888888888877663
No 78
>TIGR01935 NOT-MenG RraA famliy. This model was initially classified as a "hypothetical equivalog" expressing the tentative hypothesis that all members might have the same function as the E. coli enzyme. Considering the second clade of enterobacterial sequences within this family, that appears to be less tenable. The function of these sequences outside of the narrow RraA equivalog model (TIGR02998) remains obscure. All of these were initially annotated as MenG, AKA S-adenosylmethionine: 2-demethylmenaquinone methyltransferase (EC 2.1.-.-). See the references characterizing this as a case of transitive annotation error in the case of the E. coli protein.
Probab=40.83 E-value=67 Score=28.83 Aligned_cols=51 Identities=29% Similarity=0.383 Sum_probs=36.6
Q ss_pred hcCCCCCCeEEEEeCCC-------cHHHHHHHHHcCCcceEEEEecCCCCChhhhHHhcCCCH
Q 018481 202 MGNVAANSDVLVVDMAG-------GLLTGAVAERLGGTGYVCNTCIGDSLYPMDIVRIFNFSN 257 (355)
Q Consensus 202 ~aNV~~g~rvLV~D~~~-------GLltaAv~eRmGg~G~Vi~~~~g~~p~~~~~l~~~Nf~~ 257 (355)
+..++| +.|||+|..+ |=+.+..+.+.|-.|.|+.-+..|.. .++.++||-
T Consensus 48 i~~~~~-GdVlVid~~g~~~~a~~G~~~~~~a~~~G~~G~VidG~vRD~~----~i~~~~~Pv 105 (150)
T TIGR01935 48 LEQPGA-GRVLVVDGGGSLRCALLGDNLAVLAEENGWEGVIVNGCVRDVA----ELAGMDLGV 105 (150)
T ss_pred HhcCCC-CeEEEEECCCCCceEeehHHHHHHHHHCCCEEEEEeecccCHH----HHhhCCCCE
Confidence 444544 7788888632 44555667778999999988887764 578899984
No 79
>PRK12487 ribonuclease activity regulator protein RraA; Reviewed
Probab=40.14 E-value=48 Score=30.19 Aligned_cols=51 Identities=27% Similarity=0.365 Sum_probs=37.1
Q ss_pred hcCCCCCCeEEEEeCCC-------cHHHHHHHHHcCCcceEEEEecCCCCChhhhHHhcCCCH
Q 018481 202 MGNVAANSDVLVVDMAG-------GLLTGAVAERLGGTGYVCNTCIGDSLYPMDIVRIFNFSN 257 (355)
Q Consensus 202 ~aNV~~g~rvLV~D~~~-------GLltaAv~eRmGg~G~Vi~~~~g~~p~~~~~l~~~Nf~~ 257 (355)
+..+++ +.|||+|..+ |=+.+..+.+.|-.|.|+.-...|. +.++.++||-
T Consensus 52 l~~~~~-GdVlVid~~g~~~~a~~G~~~a~~a~~~G~aG~VidG~vRD~----~~i~~l~fPV 109 (163)
T PRK12487 52 LAQDGK-GKVLVVDGGGSCRRALLGDQIAQSALDNGWEGIVINGCVRDV----GALSTMDLGV 109 (163)
T ss_pred HhcCCC-CeEEEEECCCCCCcEeehHHHHHHHHHCCCeEEEEeecccCH----HHHhhCCCCe
Confidence 444544 6788888632 5566667788899999998887775 4678899984
No 80
>PRK13812 orotate phosphoribosyltransferase; Provisional
Probab=39.92 E-value=82 Score=28.63 Aligned_cols=52 Identities=12% Similarity=0.167 Sum_probs=34.9
Q ss_pred cCCCCCCeEEEEeC---CCcHHHHH--HHHHcCC--cceEEEEecCCCCChhhhHHhcCCC
Q 018481 203 GNVAANSDVLVVDM---AGGLLTGA--VAERLGG--TGYVCNTCIGDSLYPMDIVRIFNFS 256 (355)
Q Consensus 203 aNV~~g~rvLV~D~---~~GLltaA--v~eRmGg--~G~Vi~~~~g~~p~~~~~l~~~Nf~ 256 (355)
+++.+|.+||+||+ +||=+.++ +++..|+ .|.++.+..++. ....++.+|++
T Consensus 102 g~~~~g~~VlIVDDvitTG~Tl~~~~~~l~~~Ga~vv~~~vlvdr~~~--~~~~l~~~g~~ 160 (176)
T PRK13812 102 GRLDEGEEVVVLEDIATTGQSAVDAVEALREAGATVNRVLVVVDREEG--ARENLADHDVE 160 (176)
T ss_pred ecCCCcCEEEEEEEeeCCCHHHHHHHHHHHHCCCeEEEEEEEEECCcc--hHHHHHhcCCc
Confidence 46789999999998 56655443 5666675 466666666533 22567778876
No 81
>PRK07028 bifunctional hexulose-6-phosphate synthase/ribonuclease regulator; Validated
Probab=39.30 E-value=53 Score=33.66 Aligned_cols=59 Identities=22% Similarity=0.251 Sum_probs=41.1
Q ss_pred hHHHHHHHhcCCCCCCeEEEEeC------CCcHHHHHHHHHcCCcceEEEEecCCCCChhhhHHhcCCCH
Q 018481 194 DMLSLLLSMGNVAANSDVLVVDM------AGGLLTGAVAERLGGTGYVCNTCIGDSLYPMDIVRIFNFSN 257 (355)
Q Consensus 194 DtLa~iLs~aNV~~g~rvLV~D~------~~GLltaAv~eRmGg~G~Vi~~~~g~~p~~~~~l~~~Nf~~ 257 (355)
|.....-....++|| .|||+|. |-|=+.+..+...|..|.|+.-...|. +.++.+|||-
T Consensus 276 d~~~~~~~~~~~~~G-~VlVi~~~~~~~a~~G~~~~~~a~~~G~~G~VidG~vRD~----~~i~~~~~pv 340 (430)
T PRK07028 276 DWAKPVEAIDVAKPG-DVIVIYNSSKDIAPWGELATLSCLNKGIAGVVIDGAVRDV----DEIRKLGFPV 340 (430)
T ss_pred CcHHHHHHHhcCCCC-eEEEEECCCCCceeecHHHHHHHHHCCCeEEEEeeccCCH----HHHhhCCCCe
Confidence 444444455566665 8999995 225555666788899999998777665 4678899993
No 82
>cd08239 THR_DH_like L-threonine dehydrogenase (TDH)-like. MDR/AHD-like proteins, including a protein annotated as a threonine dehydrogenase. L-threonine dehydrogenase (TDH) catalyzes the zinc-dependent formation of 2-amino-3-ketobutyrate from L-threonine via NAD(H)-dependent oxidation. The zinc-dependent alcohol dehydrogenases (ADHs) catalyze the NAD(P)(H)-dependent interconversion of alcohols to aldehydes or ketones. Zinc-dependent ADHs are medium chain dehydrogenase/reductase type proteins (MDRs) and have a NAD(P)(H)-binding domain in a Rossmann fold of an beta-alpha form. The N-terminal region typically has an all-beta catalytic domain. In addition to alcohol dehydrogenases, this group includes quinone reductase, sorbitol dehydrogenase, formaldehyde dehydrogenase, butanediol DH, ketose reductase, cinnamyl reductase, and numerous others. These proteins typically form dimers (typically higher plants, mammals) or tetramers (yeast, bacteria), and generally have 2 tightly bound zinc at
Probab=39.29 E-value=84 Score=30.07 Aligned_cols=54 Identities=22% Similarity=0.189 Sum_probs=36.4
Q ss_pred HHHhcCCCCCCeEEEEeCC-CcHHHHHHHHHcCCcceEEEEecCCCCChhhhHHhcCC
Q 018481 199 LLSMGNVAANSDVLVVDMA-GGLLTGAVAERLGGTGYVCNTCIGDSLYPMDIVRIFNF 255 (355)
Q Consensus 199 iLs~aNV~~g~rvLV~D~~-~GLltaAv~eRmGg~G~Vi~~~~g~~p~~~~~l~~~Nf 255 (355)
.+..+++.+|.+|||...+ -|+++..++.++|.. .|+.+... +...+.++.++.
T Consensus 155 ~l~~~~~~~g~~vlV~G~G~vG~~~~~~ak~~G~~-~vi~~~~~--~~~~~~~~~~ga 209 (339)
T cd08239 155 ALRRVGVSGRDTVLVVGAGPVGLGALMLARALGAE-DVIGVDPS--PERLELAKALGA 209 (339)
T ss_pred HHHhcCCCCCCEEEEECCCHHHHHHHHHHHHcCCC-EEEEECCC--HHHHHHHHHhCC
Confidence 3456789999999999652 377788888888754 46665432 234555666664
No 83
>PF08004 DUF1699: Protein of unknown function (DUF1699); InterPro: IPR012546 This family contains many archaeal proteins which have very conserved sequences.
Probab=39.19 E-value=31 Score=30.53 Aligned_cols=22 Identities=36% Similarity=0.551 Sum_probs=20.4
Q ss_pred HHHHHHHHHcCCChHHHHHHHH
Q 018481 116 GEDIDEMRRQGATGEEIVEALI 137 (355)
Q Consensus 116 ~eeIe~LKk~G~sG~eII~~Li 137 (355)
-+.|.+|+.+|.+.+||++++-
T Consensus 94 i~~I~el~~eG~s~eei~~ki~ 115 (131)
T PF08004_consen 94 IERIKELKSEGKSEEEIAEKIS 115 (131)
T ss_pred HHHHHHHHHcCCCHHHHHHHHH
Confidence 5789999999999999999987
No 84
>PTZ00098 phosphoethanolamine N-methyltransferase; Provisional
Probab=38.15 E-value=71 Score=30.46 Aligned_cols=61 Identities=21% Similarity=0.134 Sum_probs=43.6
Q ss_pred HHHHHHhcCcccccccCHhHHHHHHHhcCCCCCCeEEEEeCCCcHHHHHHHHHcCCcceEEEEec
Q 018481 176 ICEAYFKKNPARIGFLRVDMLSLLLSMGNVAANSDVLVVDMAGGLLTGAVAERLGGTGYVCNTCI 240 (355)
Q Consensus 176 i~e~y~~KdP~KI~~LR~DtLa~iLs~aNV~~g~rvLV~D~~~GLltaAv~eRmGg~G~Vi~~~~ 240 (355)
+.|..|-.+-- ..--.+..-.+|...++.++.+||.++.+.|.++..++.+.| +.|+.+..
T Consensus 23 ~~e~~~g~~~~--~~gg~~~~~~~l~~l~l~~~~~VLDiGcG~G~~a~~la~~~~--~~v~giD~ 83 (263)
T PTZ00098 23 AYEFIFGEDYI--SSGGIEATTKILSDIELNENSKVLDIGSGLGGGCKYINEKYG--AHVHGVDI 83 (263)
T ss_pred hHHHHhCCCCC--CCCchHHHHHHHHhCCCCCCCEEEEEcCCCChhhHHHHhhcC--CEEEEEEC
Confidence 45666655421 111236678888999999999999999999998888887754 36666664
No 85
>KOG0022 consensus Alcohol dehydrogenase, class III [Secondary metabolites biosynthesis, transport and catabolism]
Probab=38.11 E-value=59 Score=33.27 Aligned_cols=60 Identities=17% Similarity=0.212 Sum_probs=46.7
Q ss_pred HHHHHHhcCCCCCCeEEEEeCCCcHHHHHHHHHcCCcceEEEEecCCCCChhhhHHhcCCCH
Q 018481 196 LSLLLSMGNVAANSDVLVVDMAGGLLTGAVAERLGGTGYVCNTCIGDSLYPMDIVRIFNFSN 257 (355)
Q Consensus 196 La~iLs~aNV~~g~rvLV~D~~~GLltaAv~eRmGg~G~Vi~~~~g~~p~~~~~l~~~Nf~~ 257 (355)
+|-.++-|+|+||+.+.|++-++=-|..++--|.-|-++|+-+..+... ...-+.|++.+
T Consensus 181 ~GAa~~~Akv~~GstvAVfGLG~VGLav~~Gaka~GAsrIIgvDiN~~K--f~~ak~fGaTe 240 (375)
T KOG0022|consen 181 YGAAWNTAKVEPGSTVAVFGLGGVGLAVAMGAKAAGASRIIGVDINPDK--FEKAKEFGATE 240 (375)
T ss_pred chhhhhhcccCCCCEEEEEecchHHHHHHHhHHhcCcccEEEEecCHHH--HHHHHhcCcce
Confidence 5788999999999999999986644555666788899999999987642 34556677664
No 86
>PLN02244 tocopherol O-methyltransferase
Probab=38.08 E-value=72 Score=31.68 Aligned_cols=45 Identities=18% Similarity=0.173 Sum_probs=36.7
Q ss_pred hHHHHHHHhcCC-----CCCCeEEEEeCCCcHHHHHHHHHcCCcceEEEEec
Q 018481 194 DMLSLLLSMGNV-----AANSDVLVVDMAGGLLTGAVAERLGGTGYVCNTCI 240 (355)
Q Consensus 194 DtLa~iLs~aNV-----~~g~rvLV~D~~~GLltaAv~eRmGg~G~Vi~~~~ 240 (355)
+.+-.+|.++++ .++.+||.++.+.|.++..++++.|. .|+.+..
T Consensus 100 ~~~~~~l~~~~~~~~~~~~~~~VLDiGCG~G~~~~~La~~~g~--~v~gvD~ 149 (340)
T PLN02244 100 RMIEESLAWAGVPDDDEKRPKRIVDVGCGIGGSSRYLARKYGA--NVKGITL 149 (340)
T ss_pred HHHHHHHHhcCCCcccCCCCCeEEEecCCCCHHHHHHHHhcCC--EEEEEEC
Confidence 346678888898 88999999999999999999998743 6666654
No 87
>PRK10144 formate-dependent nitrite reductase complex subunit NrfF; Provisional
Probab=37.71 E-value=43 Score=29.50 Aligned_cols=51 Identities=20% Similarity=0.318 Sum_probs=40.2
Q ss_pred cccCccccccCcc--cccCCHHHHHHHHHcCCChHHHHHHHHhcccccccchhhcHHHHHHHhhhccCCcEEEeCC
Q 018481 98 EFRDNRAIVDDNK--AQCLSGEDIDEMRRQGATGEEIVEALIANSATFEKKTSFSQEKYKLKKQKKYAPKVLLRRP 171 (355)
Q Consensus 98 ~~~dNr~i~Dd~~--sQkLt~eeIe~LKk~G~sG~eII~~LienS~tF~~KT~FSQeKYlkKK~kKy~~~ftilkP 171 (355)
...-|++|.|.|. ++.| ..+|.+|-++|.|-+||++-+++ +|-..|....|
T Consensus 44 ~vCqnqsiadSna~iA~dm-R~~Vr~~i~~G~sd~eI~~~~v~----------------------RYG~~Vl~~Pp 96 (126)
T PRK10144 44 PQCQNQNLLESNAPVAVSM-RHQVYSMVAEGKSEVEIIGWMTE----------------------RYGDFVRYNPP 96 (126)
T ss_pred CCCCCCChhhcCCHHHHHH-HHHHHHHHHcCCCHHHHHHHHHH----------------------hcCCeEEecCC
Confidence 3567999998886 3333 56788999999999999999994 78877776555
No 88
>COG0503 Apt Adenine/guanine phosphoribosyltransferases and related PRPP-binding proteins [Nucleotide transport and metabolism]
Probab=37.60 E-value=67 Score=29.26 Aligned_cols=39 Identities=26% Similarity=0.411 Sum_probs=27.6
Q ss_pred CCCCCeEEEEeC---CCcHHHH--HHHHHcCC--cceEEEEecCCC
Q 018481 205 VAANSDVLVVDM---AGGLLTG--AVAERLGG--TGYVCNTCIGDS 243 (355)
Q Consensus 205 V~~g~rvLV~D~---~~GLlta--Av~eRmGg--~G~Vi~~~~g~~ 243 (355)
+.+|.|||++|+ +||-+.| -+++++|+ -|..+.+..+..
T Consensus 113 l~~G~rVlIVDDllaTGgT~~a~~~Ll~~~ga~vvg~~~~ie~~~~ 158 (179)
T COG0503 113 LKPGDRVLIVDDLLATGGTALALIELLEQAGAEVVGAAFVIELGEL 158 (179)
T ss_pred CCCCCEEEEEecchhcChHHHHHHHHHHHCCCEEEEEEEEEEcCcc
Confidence 459999999999 6776654 46788887 455555655543
No 89
>COG0030 KsgA Dimethyladenosine transferase (rRNA methylation) [Translation, ribosomal structure and biogenesis]
Probab=37.32 E-value=53 Score=32.11 Aligned_cols=43 Identities=23% Similarity=0.327 Sum_probs=36.6
Q ss_pred HHHHHHHhcCCCCCCeEEEEeCCCcHHHHHHHHHcCCcceEEEEec
Q 018481 195 MLSLLLSMGNVAANSDVLVVDMAGGLLTGAVAERLGGTGYVCNTCI 240 (355)
Q Consensus 195 tLa~iLs~aNV~~g~rvLV~D~~~GLltaAv~eRmGg~G~Vi~~~~ 240 (355)
.+.-|...|++.++..||.++-+-|.||-.+++|. .+|+.+..
T Consensus 18 v~~kIv~~a~~~~~d~VlEIGpG~GaLT~~Ll~~~---~~v~aiEi 60 (259)
T COG0030 18 VIDKIVEAANISPGDNVLEIGPGLGALTEPLLERA---ARVTAIEI 60 (259)
T ss_pred HHHHHHHhcCCCCCCeEEEECCCCCHHHHHHHhhc---CeEEEEEe
Confidence 37789999999999999999999999999999985 34666654
No 90
>cd08301 alcohol_DH_plants Plant alcohol dehydrogenase. NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes or ketones. Alcohol dehydrogenase in the liver converts ethanol and NAD+ to acetaldehyde and NADH, while in yeast and some other microorganisms ADH catalyzes the conversion acetaldehyde to ethanol in alcoholic fermentation. There are 7 vertebrate ADH 7 classes, 6 of which have been identified in humans. Class III, glutathione-dependent formaldehyde dehydrogenase, has been identified as the primordial form and exists in diverse species, including plants, micro-organisms, vertebrates, and invertebrates. Class I, typified by liver dehydrogenase, is an evolving form. Gene duplication and functional specialization of ADH into ADH classes and subclasses created numerous forms in vertebrates. For example, the A, B and C (formerly alpha, beta, gamma) human class I subunits have high overall structural similarity, but differ in the
Probab=37.02 E-value=95 Score=30.34 Aligned_cols=54 Identities=15% Similarity=0.195 Sum_probs=36.0
Q ss_pred HHHhcCCCCCCeEEEEeCC-CcHHHHHHHHHcCCcceEEEEecCCCCChhhhHHhcCC
Q 018481 199 LLSMGNVAANSDVLVVDMA-GGLLTGAVAERLGGTGYVCNTCIGDSLYPMDIVRIFNF 255 (355)
Q Consensus 199 iLs~aNV~~g~rvLV~D~~-~GLltaAv~eRmGg~G~Vi~~~~g~~p~~~~~l~~~Nf 255 (355)
+...+++++|.+|||...+ -|+++..+|..+|. ..|+.+... +..++.++.++.
T Consensus 179 ~~~~~~~~~g~~VlV~G~g~vG~~a~q~ak~~G~-~~vi~~~~~--~~~~~~~~~~Ga 233 (369)
T cd08301 179 AWNVAKVKKGSTVAIFGLGAVGLAVAEGARIRGA-SRIIGVDLN--PSKFEQAKKFGV 233 (369)
T ss_pred HHhhcCCCCCCEEEEECCCHHHHHHHHHHHHcCC-CeEEEEcCC--HHHHHHHHHcCC
Confidence 3446899999999999752 26777778887763 456666433 234556666654
No 91
>TIGR03147 cyt_nit_nrfF cytochrome c nitrite reductase, accessory protein NrfF.
Probab=36.34 E-value=46 Score=29.30 Aligned_cols=51 Identities=24% Similarity=0.423 Sum_probs=39.9
Q ss_pred cccCccccccCcc--cccCCHHHHHHHHHcCCChHHHHHHHHhcccccccchhhcHHHHHHHhhhccCCcEEEeCC
Q 018481 98 EFRDNRAIVDDNK--AQCLSGEDIDEMRRQGATGEEIVEALIANSATFEKKTSFSQEKYKLKKQKKYAPKVLLRRP 171 (355)
Q Consensus 98 ~~~dNr~i~Dd~~--sQkLt~eeIe~LKk~G~sG~eII~~LienS~tF~~KT~FSQeKYlkKK~kKy~~~ftilkP 171 (355)
...-|++|.|.|. ++.| ..+|.+|-++|.|-+||++-+++ +|-..|....|
T Consensus 44 ~vCqnqsiadS~a~iA~dm-R~~Vr~~i~~G~Sd~eI~~~~v~----------------------RYG~~Vly~Pp 96 (126)
T TIGR03147 44 PQCQNQNLVESNSPIAYDL-RHEVYSMVNEGKSNQQIIDFMTA----------------------RFGDFVLYNPP 96 (126)
T ss_pred CCCCCCChhhcCCHHHHHH-HHHHHHHHHcCCCHHHHHHHHHH----------------------hcCCeEEecCC
Confidence 3566999998886 2333 56788999999999999999994 78887776655
No 92
>PRK04457 spermidine synthase; Provisional
Probab=36.11 E-value=74 Score=30.53 Aligned_cols=39 Identities=15% Similarity=0.126 Sum_probs=30.0
Q ss_pred hcCCCCCCeEEEEeCCCcHHHHHHHHHcCCcceEEEEecC
Q 018481 202 MGNVAANSDVLVVDMAGGLLTGAVAERLGGTGYVCNTCIG 241 (355)
Q Consensus 202 ~aNV~~g~rvLV~D~~~GLltaAv~eRmGg~G~Vi~~~~g 241 (355)
+.-..+..++|+++.++|.++.+++.+. +...|+.+...
T Consensus 61 l~~~~~~~~vL~IG~G~G~l~~~l~~~~-p~~~v~~VEid 99 (262)
T PRK04457 61 LLFNPRPQHILQIGLGGGSLAKFIYTYL-PDTRQTAVEIN 99 (262)
T ss_pred HhcCCCCCEEEEECCCHhHHHHHHHHhC-CCCeEEEEECC
Confidence 3333456899999999999999999887 45677777753
No 93
>KOG1596 consensus Fibrillarin and related nucleolar RNA-binding proteins [RNA processing and modification]
Probab=36.06 E-value=27 Score=34.54 Aligned_cols=41 Identities=24% Similarity=0.363 Sum_probs=36.1
Q ss_pred hcCC--CCCCeEEEEeCCCcHHHHHHHHHcCCcceEEEEecCC
Q 018481 202 MGNV--AANSDVLVVDMAGGLLTGAVAERLGGTGYVCNTCIGD 242 (355)
Q Consensus 202 ~aNV--~~g~rvLV~D~~~GLltaAv~eRmGg~G~Vi~~~~g~ 242 (355)
..|| +||++||-+...+|--+.-+..-+|.+|.||.+.-..
T Consensus 149 vdnihikpGsKVLYLGAasGttVSHvSDiVGpeG~VYAVEfs~ 191 (317)
T KOG1596|consen 149 VDNIHIKPGSKVLYLGAASGTTVSHVSDIVGPEGCVYAVEFSH 191 (317)
T ss_pred ccceeecCCceEEEeeccCCceeehhhcccCCCceEEEEEecc
Confidence 4454 6999999999999999999999999999999987433
No 94
>cd04466 S1_YloQ_GTPase S1_YloQ_GTPase: YloQ GTase family (also known as YjeQ and CpgA), S1-like RNA-binding domain. Proteins in the YloQ GTase family bind the ribosome and have GTPase activity. The precise role of this family is unknown. The protein structure is composed of three domains: an N-terminal S1 domain, a central GTPase domain, and a C-terminal zinc finger domain. This N-terminal S1 domain binds ssRNA. The central GTPase domain contains nucleotide-binding signature motifs: G1 (walker A), G3 (walker B) and G4 motifs. Experiments show that the bacterial YloQ and YjeQ proteins have low intrinsic GTPase activity. The C-terminal zinc-finger domain has structural similarity to a portion of the DNA-repair protein Rad51. This suggests a possible role for this GTPase as a regulator of translation, perhaps as a translation initiation factor. This family is classified based on the N-terminal S1 domain.
Probab=35.98 E-value=70 Score=23.60 Aligned_cols=28 Identities=14% Similarity=0.080 Sum_probs=18.8
Q ss_pred CcccCCCEEEEEecCCCeEEEEEEecCC
Q 018481 15 QLTWEGCSVLLDINDGDRLVFARLTSGS 42 (355)
Q Consensus 15 ~~I~eGd~VlL~~~~g~~~~iv~l~~~~ 42 (355)
..+..||+|++..++++...+.++-|-+
T Consensus 36 ~~~~VGD~V~~~~~~~~~~~I~~vl~R~ 63 (68)
T cd04466 36 NPPAVGDRVEFEPEDDGEGVIEEILPRK 63 (68)
T ss_pred CCCCCCcEEEEEECCCCcEEEEEEeccc
Confidence 3467899999987655555465665544
No 95
>TIGR02798 ligK_PcmE 4-carboxy-4-hydroxy-2-oxoadipate aldolase/oxaloacetate decarboxylase. Members of this protein family 4-carboxy-4-hydroxy-2-oxoadipate aldolase, also called 4-oxalocitramalate aldolase. This enzyme of the protocatechuate 4,5-cleavage pathway converts its substrate to pyruvate plus oxaloacetate. Protocatechuate is an intermediate in many pathways for degrading aromatic compounds, including lignin, fluorene, etc. Hara, et al. showed the LigK gene was not only a 4-carboxy-4-hydroxy-2-oxoadipate aldolase but also the enzyme of the following step, oxaloacetate decarboxylase.
Probab=35.75 E-value=80 Score=30.04 Aligned_cols=51 Identities=20% Similarity=0.281 Sum_probs=36.9
Q ss_pred hcCCCCCCeEEEEeCCC-------cHHHHHHHHHcCCcceEEEEecCCCCChhhhHHhcCCCH
Q 018481 202 MGNVAANSDVLVVDMAG-------GLLTGAVAERLGGTGYVCNTCIGDSLYPMDIVRIFNFSN 257 (355)
Q Consensus 202 ~aNV~~g~rvLV~D~~~-------GLltaAv~eRmGg~G~Vi~~~~g~~p~~~~~l~~~Nf~~ 257 (355)
+-.++| +.|||+|..+ |=+.+..|...|-.|.|+.-...|. +.++.++||-
T Consensus 70 i~~~~p-GdVlVid~~g~~~~a~~G~~~a~~a~~~G~~GiVidG~vRD~----~~i~~l~~Pv 127 (222)
T TIGR02798 70 AEQIQE-GDVVVAACTAECEDGYFGDLLATSFQARGCRGLIIDAGVRDV----RDLTEMNFPV 127 (222)
T ss_pred HHhCCC-CeEEEEECCCCcceEeehHHHHHHHHHCCCeEEEEecccCCH----HHHhhCCCce
Confidence 444455 7888998522 5566666777899999998877665 4678899983
No 96
>PRK13810 orotate phosphoribosyltransferase; Provisional
Probab=35.43 E-value=1.2e+02 Score=28.02 Aligned_cols=53 Identities=11% Similarity=0.248 Sum_probs=34.8
Q ss_pred hcCCCCCCeEEEEeC---CCcHHHHH--HHHHcCC--cceEEEEecCCCCChhhhHHhcCCC
Q 018481 202 MGNVAANSDVLVVDM---AGGLLTGA--VAERLGG--TGYVCNTCIGDSLYPMDIVRIFNFS 256 (355)
Q Consensus 202 ~aNV~~g~rvLV~D~---~~GLltaA--v~eRmGg--~G~Vi~~~~g~~p~~~~~l~~~Nf~ 256 (355)
...+.+|.|||++|+ ++|=+.++ +++..|+ .|.++.+..+.. ....++.+|++
T Consensus 116 ~g~~~~g~rVlIVDDVitTGgS~~~~i~~l~~~Ga~V~~v~vlvdr~~g--~~~~l~~~gi~ 175 (187)
T PRK13810 116 VGDLKPEDRIVMLEDVTTSGGSVREAIEVVREAGAYIKYVITVVDREEG--AEENLKEADVE 175 (187)
T ss_pred EccCCCcCEEEEEEeccCCChHHHHHHHHHHHCCCEEEEEEEEEECCcC--hHHHHHHcCCc
Confidence 356789999999999 55555443 4555665 466666666543 33567777764
No 97
>TIGR03366 HpnZ_proposed putative phosphonate catabolism associated alcohol dehydrogenase. This clade of zinc-binding alcohol dehydrogenases (members of pfam00107) are repeatedly associated with genes proposed to be involved with the catabolism of phosphonate compounds.
Probab=35.42 E-value=1.1e+02 Score=28.63 Aligned_cols=54 Identities=24% Similarity=0.178 Sum_probs=36.1
Q ss_pred HHHhcCCCCCCeEEEEeCC-CcHHHHHHHHHcCCcceEEEEecCCCCChhhhHHhcCC
Q 018481 199 LLSMGNVAANSDVLVVDMA-GGLLTGAVAERLGGTGYVCNTCIGDSLYPMDIVRIFNF 255 (355)
Q Consensus 199 iLs~aNV~~g~rvLV~D~~-~GLltaAv~eRmGg~G~Vi~~~~g~~p~~~~~l~~~Nf 255 (355)
.+..+++.+|.+|||+..+ -|++++.+|..+|- ..|+.+. ..+..+..++.++.
T Consensus 112 al~~~~~~~g~~VlV~G~G~vG~~~~~~ak~~G~-~~Vi~~~--~~~~r~~~a~~~Ga 166 (280)
T TIGR03366 112 ALEAAGDLKGRRVLVVGAGMLGLTAAAAAAAAGA-ARVVAAD--PSPDRRELALSFGA 166 (280)
T ss_pred HHHhccCCCCCEEEEECCCHHHHHHHHHHHHcCC-CEEEEEC--CCHHHHHHHHHcCC
Confidence 4455677799999999763 37777778877753 3466653 23446667777775
No 98
>PF12990 DUF3874: Domain of unknonw function from B. Theta Gene description (DUF3874); InterPro: IPR024450 This domain of unknown function if found in uncharacterised proteins from Bacteroides thetaiotaomicron and other Bacteroidetes.
Probab=35.21 E-value=72 Score=25.44 Aligned_cols=37 Identities=22% Similarity=0.134 Sum_probs=33.2
Q ss_pred CCChHHHHHHHHhcCcccccccCHhHHHHHHHhcCCC
Q 018481 170 RPFARSICEAYFKKNPARIGFLRVDMLSLLLSMGNVA 206 (355)
Q Consensus 170 kPt~~~i~e~y~~KdP~KI~~LR~DtLa~iLs~aNV~ 206 (355)
..|+-.|.+..-.++|.++....+-.+|+||...||.
T Consensus 25 ~lsa~~If~~L~k~~~~~l~~~~~~~FGriL~~~gi~ 61 (73)
T PF12990_consen 25 WLSAAEIFERLQKKSPAALRGSNPNHFGRILQKLGIP 61 (73)
T ss_pred eecHHHHHHHHHHhCccccccCCHHHHHHHHHHcCCC
Confidence 3478888998889999999999999999999999994
No 99
>KOG3967 consensus Uncharacterized conserved protein [Function unknown]
Probab=35.08 E-value=1.2e+02 Score=29.61 Aligned_cols=88 Identities=24% Similarity=0.272 Sum_probs=58.1
Q ss_pred HHHHHHHhhhccCCcEEEeCCChHHHHHHHHhc--CcccccccCHhHHHHHHHhcCC----CCCCeEEEEeCCCcHHHHH
Q 018481 151 QEKYKLKKQKKYAPKVLLRRPFARSICEAYFKK--NPARIGFLRVDMLSLLLSMGNV----AANSDVLVVDMAGGLLTGA 224 (355)
Q Consensus 151 QeKYlkKK~kKy~~~ftilkPt~~~i~e~y~~K--dP~KI~~LR~DtLa~iLs~aNV----~~g~rvLV~D~~~GLltaA 224 (355)
|--|++|-.+-=. -+.|+-|+ =|.-+|.+ +| +.++|...=-..--|-|+ .+-+-++|.-+-||++++.
T Consensus 133 QiPyi~rAv~~Gy-gviv~N~N---~~~kfye~k~np--~kyirt~veh~~yvw~~~v~pa~~~sv~vvahsyGG~~t~~ 206 (297)
T KOG3967|consen 133 QIPYIKRAVAEGY-GVIVLNPN---RERKFYEKKRNP--QKYIRTPVEHAKYVWKNIVLPAKAESVFVVAHSYGGSLTLD 206 (297)
T ss_pred cChHHHHHHHcCC-cEEEeCCc---hhhhhhhcccCc--chhccchHHHHHHHHHHHhcccCcceEEEEEeccCChhHHH
Confidence 5568887765432 35666665 34446655 56 555553221112222222 4567777788899999999
Q ss_pred HHHHcCCcceEEEEecCCCC
Q 018481 225 VAERLGGTGYVCNTCIGDSL 244 (355)
Q Consensus 225 v~eRmGg~G~Vi~~~~g~~p 244 (355)
+++|.++.-+|..+...++|
T Consensus 207 l~~~f~~d~~v~aialTDs~ 226 (297)
T KOG3967|consen 207 LVERFPDDESVFAIALTDSA 226 (297)
T ss_pred HHHhcCCccceEEEEeeccc
Confidence 99999999999999887765
No 100
>PRK00050 16S rRNA m(4)C1402 methyltranserfase; Provisional
Probab=34.29 E-value=93 Score=30.91 Aligned_cols=45 Identities=20% Similarity=0.201 Sum_probs=36.3
Q ss_pred HHHHHHhcCCCCCCeEEEEeCCCcHHHHHHHHHcCCcceEEEEec
Q 018481 196 LSLLLSMGNVAANSDVLVVDMAGGLLTGAVAERLGGTGYVCNTCI 240 (355)
Q Consensus 196 La~iLs~aNV~~g~rvLV~D~~~GLltaAv~eRmGg~G~Vi~~~~ 240 (355)
|.-+|...++.+|+.||-+--+.|--+.+++++++..|+|+.+..
T Consensus 8 l~Evl~~L~~~pg~~vlD~TlG~GGhS~~il~~~~~~g~VigiD~ 52 (296)
T PRK00050 8 LDEVVDALAIKPDGIYVDGTFGGGGHSRAILERLGPKGRLIAIDR 52 (296)
T ss_pred HHHHHHhhCCCCCCEEEEeCcCChHHHHHHHHhCCCCCEEEEEcC
Confidence 455667778889987665555779999999999988899999875
No 101
>PF03737 Methyltransf_6: Demethylmenaquinone methyltransferase; InterPro: IPR005493 This entry represents a structural motif found in demethylmenaquinone methyltransferases and in the regulator of ribonuclease E activity A (RraA). These proteins contain a swivelling 3-layer beta/beta/alpha domain that appears to be mobile in most multi-domain proteins known to contain it. These proteins are structurally similar, and may have distant homology, to the phosphohistidine domain of pyruvate phosphate dikinase. The RraA fold is an ancient platform that has been adapted for a wide range of functions. RraA had been identified as a putative demethylmenaquinone methyltransferase and was annotated as MenG, but further analysis showed that RraA lacked the structural motifs usually required for methylases. The Escherichia coli protein regulator RraA acts as a trans-acting modulator of RNA turnover, binding essential endonuclease RNase E and inhibiting RNA processing []. RNase E forms the core of a large RNA-catalysis machine termed the degradosomes. RraA (and RraB) causes remodelling of degradosome composition, which is associated with alterations in RNA decay and global transcript abundance and as such is a bacterial mechanism for the regulation of RNA cleavage. Demethylmenaquinone methyltransferases convert dimethylmenaquinone (DMK) to menaquinone (MK) in the final step of menaquinone biosynthesis. This region is also found at the C terminus of the DlpA protein Q48806 from SWISSPROT.; PDB: 3C8O_A 2PCN_A 3K4I_B 2YJV_A 1Q5X_B 2C5Q_D 2YJT_B 1NXJ_B 3NOJ_A 1J3L_A ....
Probab=34.17 E-value=66 Score=28.54 Aligned_cols=56 Identities=29% Similarity=0.398 Sum_probs=39.0
Q ss_pred HHHHHHhcCCCCCCeEEEEeCCC-------cHHHHHHHHHcCCcceEEEEecCCCCChhhhHHhcCCC
Q 018481 196 LSLLLSMGNVAANSDVLVVDMAG-------GLLTGAVAERLGGTGYVCNTCIGDSLYPMDIVRIFNFS 256 (355)
Q Consensus 196 La~iLs~aNV~~g~rvLV~D~~~-------GLltaAv~eRmGg~G~Vi~~~~g~~p~~~~~l~~~Nf~ 256 (355)
....-.+..+++| .|||+|..+ |=+.+..+.+.|-.|.|+.-...|.+ .++.++||
T Consensus 47 ~~~~~~i~~~~~G-~VlVid~~~~~~~a~~G~~~a~~a~~~G~~G~VidG~vRD~~----~i~~~~~P 109 (154)
T PF03737_consen 47 LLVREAIDAAPPG-DVLVIDGGGDTDCAVWGELMATAAKARGVAGVVIDGAVRDVD----EIRELGFP 109 (154)
T ss_dssp HHHHHHHTSS-TT-EEEEEEETTGSSSEEE-HHHHHHHHHTTBSEEEEEEEES-HH----HHTTSSSE
T ss_pred HHHHHHHhcCCCC-eEEEEECCCCcceeeECHHHHHHHHHCCCeEEECCCcccCHH----HHhhcCCC
Confidence 4444445555554 699998732 56677777889999999999887754 67888988
No 102
>PF07021 MetW: Methionine biosynthesis protein MetW; InterPro: IPR010743 This family consists of several bacterial and one archaeal methionine biosynthesis MetW proteins. Biosynthesis of methionine from homoserine in Pseudomonas putida takes place in three steps. The first step is the acylation of homoserine to yield an acyl-L-homoserine. This reaction is catalysed by the products of the metXW genes and is equivalent to the first step in enterobacteria, Gram-positive bacteria and fungi, except that in these microorganisms the reaction is catalysed by a single polypeptide (the product of the metA gene in Escherichia coli and the met5 gene product in Neurospora crassa). In P. putida, as in Gram-positive bacteria and certain fungi, the second and third steps are a direct sulphydrylation that converts the O-acyl-L-homoserine into homocysteine and further methylation to yield methionine. The latter reaction can be mediated by either of the two methionine synthetases present in the cells [].
Probab=33.85 E-value=52 Score=30.96 Aligned_cols=34 Identities=21% Similarity=0.228 Sum_probs=28.5
Q ss_pred CCCCCCeEEEEeCCCcHHHHHHHHHcCCcceEEE
Q 018481 204 NVAANSDVLVVDMAGGLLTGAVAERLGGTGYVCN 237 (355)
Q Consensus 204 NV~~g~rvLV~D~~~GLltaAv~eRmGg~G~Vi~ 237 (355)
=|.||+|||-++.+.|-|.+.+.+..+-.|.=+-
T Consensus 10 ~I~pgsrVLDLGCGdG~LL~~L~~~k~v~g~GvE 43 (193)
T PF07021_consen 10 WIEPGSRVLDLGCGDGELLAYLKDEKQVDGYGVE 43 (193)
T ss_pred HcCCCCEEEecCCCchHHHHHHHHhcCCeEEEEe
Confidence 4899999999999999999999998876554443
No 103
>PRK09424 pntA NAD(P) transhydrogenase subunit alpha; Provisional
Probab=33.73 E-value=51 Score=35.16 Aligned_cols=119 Identities=20% Similarity=0.223 Sum_probs=70.4
Q ss_pred cccCCHHHHHHHHHcC--------CChHHHHHHHHhcccccccchhhcHHHHHH--HhhhccCCcEEEeCCCh-----HH
Q 018481 111 AQCLSGEDIDEMRRQG--------ATGEEIVEALIANSATFEKKTSFSQEKYKL--KKQKKYAPKVLLRRPFA-----RS 175 (355)
Q Consensus 111 sQkLt~eeIe~LKk~G--------~sG~eII~~LienS~tF~~KT~FSQeKYlk--KK~kKy~~~ftilkPt~-----~~ 175 (355)
.+.-+.+|+..||+.. ....+++++|++..- |.|+=|---+ |-+ .+-++.+.. +.
T Consensus 72 V~~P~~~e~~~l~~g~~li~~l~p~~~~~l~~~l~~~~i-----t~ia~e~vpr~sraq-----~~d~lssma~IAGy~A 141 (509)
T PRK09424 72 VNAPSDDEIALLREGATLVSFIWPAQNPELLEKLAARGV-----TVLAMDAVPRISRAQ-----SLDALSSMANIAGYRA 141 (509)
T ss_pred eCCCCHHHHHhcCCCCEEEEEeCcccCHHHHHHHHHcCC-----EEEEeecccccccCC-----CcccccchhhhhHHHH
Confidence 4777889999998764 235788888876432 2333222110 111 112222211 11
Q ss_pred HHH--HHHhcCcccccccCHhHHHHHHHhcCCCCCCeEEEEeCC-CcHHHHHHHHHcCCcceEEEEecCCCCChhhhHHh
Q 018481 176 ICE--AYFKKNPARIGFLRVDMLSLLLSMGNVAANSDVLVVDMA-GGLLTGAVAERLGGTGYVCNTCIGDSLYPMDIVRI 252 (355)
Q Consensus 176 i~e--~y~~KdP~KI~~LR~DtLa~iLs~aNV~~g~rvLV~D~~-~GLltaAv~eRmGg~G~Vi~~~~g~~p~~~~~l~~ 252 (355)
+.+ .+|.+. +..+.+.+++.+|.+|+|++.+ -||.+...|.+||- .|+.+... |..+...+.
T Consensus 142 v~~aa~~~~~~-----------~~g~~taaG~~pg~kVlViGaG~iGL~Ai~~Ak~lGA--~V~a~D~~--~~rle~aes 206 (509)
T PRK09424 142 VIEAAHEFGRF-----------FTGQITAAGKVPPAKVLVIGAGVAGLAAIGAAGSLGA--IVRAFDTR--PEVAEQVES 206 (509)
T ss_pred HHHHHHHhccc-----------CCCceeccCCcCCCEEEEECCcHHHHHHHHHHHHCCC--EEEEEeCC--HHHHHHHHH
Confidence 222 244443 4566777889999999999995 59999999999986 46555433 224455555
Q ss_pred cC
Q 018481 253 FN 254 (355)
Q Consensus 253 ~N 254 (355)
|+
T Consensus 207 lG 208 (509)
T PRK09424 207 MG 208 (509)
T ss_pred cC
Confidence 54
No 104
>PRK13811 orotate phosphoribosyltransferase; Provisional
Probab=33.48 E-value=1.2e+02 Score=27.37 Aligned_cols=49 Identities=14% Similarity=0.156 Sum_probs=33.9
Q ss_pred CCCCeEEEEeC---CCcHHHH--HHHHHcCC--cceEEEEecCCCCChhhhHHhcCCC
Q 018481 206 AANSDVLVVDM---AGGLLTG--AVAERLGG--TGYVCNTCIGDSLYPMDIVRIFNFS 256 (355)
Q Consensus 206 ~~g~rvLV~D~---~~GLlta--Av~eRmGg--~G~Vi~~~~g~~p~~~~~l~~~Nf~ 256 (355)
-+|.|||++|+ ++|-+.+ .++++.|+ .|.++.+..++. ..+.++.+|+|
T Consensus 102 ~~g~~VlIVDDvi~TG~T~~~~~~~l~~~Ga~v~~~~~~vdr~~g--~~~~l~~~gv~ 157 (170)
T PRK13811 102 VKGKRVLLVEDVTTSGGSALYGIEQLRAAGAVVDDVVTVVDREQG--AEELLAELGIT 157 (170)
T ss_pred cCCCEEEEEEecccccHHHHHHHHHHHHCCCeEEEEEEEEECCcc--HHHHHHhcCCc
Confidence 38999999999 5555543 45677776 567777777653 23667777876
No 105
>PRK15219 carbonic anhydrase; Provisional
Probab=32.69 E-value=1.2e+02 Score=29.33 Aligned_cols=98 Identities=21% Similarity=0.266 Sum_probs=59.3
Q ss_pred cCCChHHHHHHHHhcccccccchhhcHHHHHHHh---hhccCCcEEEeCC-ChHHHHHHHHhcCcccccccCH-------
Q 018481 125 QGATGEEIVEALIANSATFEKKTSFSQEKYKLKK---QKKYAPKVLLRRP-FARSICEAYFKKNPARIGFLRV------- 193 (355)
Q Consensus 125 ~G~sG~eII~~LienS~tF~~KT~FSQeKYlkKK---~kKy~~~ftilkP-t~~~i~e~y~~KdP~KI~~LR~------- 193 (355)
..++.+++++.|++++..|...+ |.+..|..++ .+.-.+.+.++-+ ..|.--+.+|...|.-+--+|.
T Consensus 49 ~~~~p~~al~~L~~GN~rF~~~~-~~~~~~~~~~~~la~gQ~P~a~vi~CsDSRV~pe~ifd~~~GdlFvvRnaGN~v~~ 127 (245)
T PRK15219 49 DKMTPDQIIESLKQGNKRFRSGK-PAQHDYLAQKRASAAGQYPAAVILSCIDSRAPAEIILDTGIGETFNSRVAGNISND 127 (245)
T ss_pred CCCCHHHHHHHHHHHHHHHHhcC-cCCchhhHHhhhhccCCCCeEEEEecccCCCCHHHHhCCCCCcEEEEeccccccCc
Confidence 45788999999999999998865 3444455322 1233456666644 3444457888888865555552
Q ss_pred hHHHHH---HHhcCCCCCCeEEEEeCC-CcHHHHHHH
Q 018481 194 DMLSLL---LSMGNVAANSDVLVVDMA-GGLLTGAVA 226 (355)
Q Consensus 194 DtLa~i---Ls~aNV~~g~rvLV~D~~-~GLltaAv~ 226 (355)
|.+|-| +...+| ..++|++++ .|.+.|++-
T Consensus 128 ~~~~slEyAv~~L~v---~~IvVlGHt~CGav~Aa~~ 161 (245)
T PRK15219 128 DLLGSMEFACAVAGA---KVVLVMGHTACGAVKGAID 161 (245)
T ss_pred chhhHHHHHHHHcCC---CEEEEecCCcchHHHHHHh
Confidence 333332 333344 467777774 366666653
No 106
>COG0684 MenG Demethylmenaquinone methyltransferase [Coenzyme metabolism]
Probab=32.67 E-value=68 Score=30.51 Aligned_cols=52 Identities=27% Similarity=0.388 Sum_probs=38.4
Q ss_pred HhcCCCCCCeEEEEeCCC-------cHHHHHHHHHcCCcceEEEEecCCCCChhhhHHhcCCCH
Q 018481 201 SMGNVAANSDVLVVDMAG-------GLLTGAVAERLGGTGYVCNTCIGDSLYPMDIVRIFNFSN 257 (355)
Q Consensus 201 s~aNV~~g~rvLV~D~~~-------GLltaAv~eRmGg~G~Vi~~~~g~~p~~~~~l~~~Nf~~ 257 (355)
.+.-..+|. |||+|..+ |=+++-.+..-|-.|.|+.--..+.+ .++.||||-
T Consensus 64 al~~~~~Gd-VLVid~~g~~~~A~~Gd~la~~a~~~G~~GvVidG~vRDv~----~l~el~~pv 122 (210)
T COG0684 64 ALEQAGPGD-VLVIDGGGDLRRALWGDLLATLAKVRGWAGVVIDGAVRDVD----ELRELDFPV 122 (210)
T ss_pred eeecCCCCC-EEEEeCCCCcceeehHHHHHHHHHHcCccEEEEeceeechH----HHhhcCCCe
Confidence 344445555 99998743 55666777778999999988777764 688999984
No 107
>PLN02740 Alcohol dehydrogenase-like
Probab=32.63 E-value=1.2e+02 Score=30.07 Aligned_cols=52 Identities=19% Similarity=0.223 Sum_probs=35.5
Q ss_pred HhcCCCCCCeEEEEeCCC-cHHHHHHHHHcCCcceEEEEecCCCCChhhhHHhcCC
Q 018481 201 SMGNVAANSDVLVVDMAG-GLLTGAVAERLGGTGYVCNTCIGDSLYPMDIVRIFNF 255 (355)
Q Consensus 201 s~aNV~~g~rvLV~D~~~-GLltaAv~eRmGg~G~Vi~~~~g~~p~~~~~l~~~Nf 255 (355)
..+++++|.+|||+..++ |+++..+|..+|. ..|+.+... +..++.++.++.
T Consensus 192 ~~~~~~~g~~VlV~G~G~vG~~a~q~ak~~G~-~~Vi~~~~~--~~r~~~a~~~Ga 244 (381)
T PLN02740 192 NTANVQAGSSVAIFGLGAVGLAVAEGARARGA-SKIIGVDIN--PEKFEKGKEMGI 244 (381)
T ss_pred hccCCCCCCEEEEECCCHHHHHHHHHHHHCCC-CcEEEEcCC--hHHHHHHHHcCC
Confidence 458999999999997522 6777778887763 356666432 335566666665
No 108
>TIGR02998 RraA_entero regulator of ribonuclease activity A. THIS PROTEIN IS _NOT_ MenG, AKA S-adenosylmethionine: 2-demethylmenaquinone methyltransferase (EC 2.1.-.-). See the references characterizing this as a case of transitive annotation error .
Probab=32.08 E-value=1.1e+02 Score=27.72 Aligned_cols=51 Identities=16% Similarity=0.124 Sum_probs=36.3
Q ss_pred hcCCCCCCeEEEEeCC-------CcHHHHHHHHHcCCcceEEEEecCCCCChhhhHHhcCCCH
Q 018481 202 MGNVAANSDVLVVDMA-------GGLLTGAVAERLGGTGYVCNTCIGDSLYPMDIVRIFNFSN 257 (355)
Q Consensus 202 ~aNV~~g~rvLV~D~~-------~GLltaAv~eRmGg~G~Vi~~~~g~~p~~~~~l~~~Nf~~ 257 (355)
+..++| +.|||+|.. -|=+.+..|...|-.|.|+.-+..|.. .++.++||-
T Consensus 52 id~~~p-GdVlVid~~g~~~~A~~G~~la~~a~~~G~aGvVidG~vRD~~----~i~~l~~PV 109 (161)
T TIGR02998 52 LEQNGT-GRVLVIDGGGSTRRALIDAELAQLAANNGWEGIVVYGAVRQVD----ALEELDIGI 109 (161)
T ss_pred HhccCC-CeEEEEECCCCCceEeeCHHHHHHHHHCCCeEEEEeecccCHH----HHhhCCCCc
Confidence 334444 788888852 244455557778999999998887764 578899984
No 109
>PRK09262 hypothetical protein; Provisional
Probab=32.00 E-value=91 Score=29.64 Aligned_cols=52 Identities=23% Similarity=0.238 Sum_probs=37.5
Q ss_pred HhcCCCCCCeEEEEeC-------CCcHHHHHHHHHcCCcceEEEEecCCCCChhhhHHhcCCCH
Q 018481 201 SMGNVAANSDVLVVDM-------AGGLLTGAVAERLGGTGYVCNTCIGDSLYPMDIVRIFNFSN 257 (355)
Q Consensus 201 s~aNV~~g~rvLV~D~-------~~GLltaAv~eRmGg~G~Vi~~~~g~~p~~~~~l~~~Nf~~ 257 (355)
.+..++| +.|||+|. +-|=+.+..+.+.|-.|.|+.-...|.. .++.++||-
T Consensus 71 ai~~~~p-GdVlVid~~g~~~~a~~Ge~~a~~a~~~G~~GiVidG~vRD~~----~i~~l~~Pv 129 (225)
T PRK09262 71 AVEQCQP-GDVLVVAPTSPCTDGFFGDLLATSLQARGVRGLVIDAGVRDVR----TLTEMGFPV 129 (225)
T ss_pred HHHccCC-CCEEEEECCCCCceeeehHHHHHHHHHCCCeEEEEeceeCCHH----HHhhCCCce
Confidence 4556676 56777774 2356667777888999999987776654 578899984
No 110
>cd08274 MDR9 Medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family. This group is a member of the medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, but lacks the zinc-binding sites of the zinc-dependent alcohol dehydrogenases. The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P)-binding Rossmann fold domain of a beta-alpha form and an N-terminal catalytic domain with distant homology to GroES. The MDR group contains a host of activities, including the founding alcoh
Probab=31.78 E-value=1.5e+02 Score=28.23 Aligned_cols=51 Identities=27% Similarity=0.296 Sum_probs=35.7
Q ss_pred HHhcCCCCCCeEEEEeCCC--cHHHHHHHHHcCCcceEEEEecCCCCChhhhHHhcCC
Q 018481 200 LSMGNVAANSDVLVVDMAG--GLLTGAVAERLGGTGYVCNTCIGDSLYPMDIVRIFNF 255 (355)
Q Consensus 200 Ls~aNV~~g~rvLV~D~~~--GLltaAv~eRmGg~G~Vi~~~~g~~p~~~~~l~~~Nf 255 (355)
+..+++++|.++||.+.++ |+.++.++..+|.. |+.+... . ....++.++.
T Consensus 170 ~~~~~~~~g~~vlI~g~~g~ig~~~~~~a~~~g~~--vi~~~~~--~-~~~~~~~~g~ 222 (350)
T cd08274 170 LERAGVGAGETVLVTGASGGVGSALVQLAKRRGAI--VIAVAGA--A-KEEAVRALGA 222 (350)
T ss_pred HhhcCCCCCCEEEEEcCCcHHHHHHHHHHHhcCCE--EEEEeCc--h-hhHHHHhcCC
Confidence 4567899999999998744 67778888988865 5555432 2 4456666664
No 111
>TIGR02822 adh_fam_2 zinc-binding alcohol dehydrogenase family protein. Members of this model form a distinct subset of the larger family of oxidoreductases that includes zinc-binding alcohol dehydrogenases and NADPH:quinone reductases (pfam00107). The gene neighborhood of members of this family is not conserved and it appears that no members are characterized. The sequence of the family includes 6 invariant cysteine residues and one invariant histidine. It appears that no member is characterized.
Probab=31.57 E-value=1.5e+02 Score=28.77 Aligned_cols=53 Identities=15% Similarity=0.100 Sum_probs=36.8
Q ss_pred HHhcCCCCCCeEEEEeC-CCcHHHHHHHHHcCCcceEEEEecCCCCChhhhHHhcCCC
Q 018481 200 LSMGNVAANSDVLVVDM-AGGLLTGAVAERLGGTGYVCNTCIGDSLYPMDIVRIFNFS 256 (355)
Q Consensus 200 Ls~aNV~~g~rvLV~D~-~~GLltaAv~eRmGg~G~Vi~~~~g~~p~~~~~l~~~Nf~ 256 (355)
+..+++++|.+|||.+. ..|+++..+|..+|. +|+.+... +..++.++.++..
T Consensus 158 ~~~~~~~~g~~VlV~G~g~iG~~a~~~a~~~G~--~vi~~~~~--~~~~~~a~~~Ga~ 211 (329)
T TIGR02822 158 LLRASLPPGGRLGLYGFGGSAHLTAQVALAQGA--TVHVMTRG--AAARRLALALGAA 211 (329)
T ss_pred HHhcCCCCCCEEEEEcCCHHHHHHHHHHHHCCC--eEEEEeCC--hHHHHHHHHhCCc
Confidence 45689999999999985 236666777777764 46555432 3466778888865
No 112
>TIGR02818 adh_III_F_hyde S-(hydroxymethyl)glutathione dehydrogenase/class III alcohol dehydrogenase. The members of this protein family show dual function. First, they remove formaldehyde, a toxic metabolite, by acting as S-(hydroxymethyl)glutathione dehydrogenase (1.1.1.284). S-(hydroxymethyl)glutathione can form spontaneously from formaldehyde and glutathione, and so this enzyme previously was designated glutathione-dependent formaldehyde dehydrogenase. These same proteins are also designated alcohol dehydrogenase (EC 1.1.1.1) of class III, for activities that do not require glutathione; they tend to show poor activity for ethanol among their various substrate alcohols.
Probab=31.35 E-value=1.3e+02 Score=29.71 Aligned_cols=52 Identities=13% Similarity=0.092 Sum_probs=35.0
Q ss_pred HhcCCCCCCeEEEEeCC-CcHHHHHHHHHcCCcceEEEEecCCCCChhhhHHhcCC
Q 018481 201 SMGNVAANSDVLVVDMA-GGLLTGAVAERLGGTGYVCNTCIGDSLYPMDIVRIFNF 255 (355)
Q Consensus 201 s~aNV~~g~rvLV~D~~-~GLltaAv~eRmGg~G~Vi~~~~g~~p~~~~~l~~~Nf 255 (355)
..+++++|.+|||+..+ -|+++..+|..+|. ..|+.+... +..++.++.++.
T Consensus 179 ~~~~~~~g~~VlV~G~G~iG~~a~q~Ak~~G~-~~Vi~~~~~--~~~~~~a~~~Ga 231 (368)
T TIGR02818 179 NTAKVEEGDTVAVFGLGGIGLSVIQGARMAKA-SRIIAIDIN--PAKFELAKKLGA 231 (368)
T ss_pred HhcCCCCCCEEEEECCCHHHHHHHHHHHHcCC-CeEEEEcCC--HHHHHHHHHhCC
Confidence 46889999999999752 26677778887764 356665432 334566666665
No 113
>PHA03412 putative methyltransferase; Provisional
Probab=31.31 E-value=1.1e+02 Score=29.80 Aligned_cols=35 Identities=11% Similarity=0.001 Sum_probs=28.5
Q ss_pred CCeEEEEeCCCcHHHHHHHHHcC--CcceEEEEecCC
Q 018481 208 NSDVLVVDMAGGLLTGAVAERLG--GTGYVCNTCIGD 242 (355)
Q Consensus 208 g~rvLV~D~~~GLltaAv~eRmG--g~G~Vi~~~~g~ 242 (355)
+++||.+.+++|.++.+++++|. ....|+.+....
T Consensus 50 ~grVLDlG~GSG~Lalala~~~~~~~~~~V~aVEID~ 86 (241)
T PHA03412 50 SGSVVDLCAGIGGLSFAMVHMMMYAKPREIVCVELNH 86 (241)
T ss_pred CCEEEEccChHHHHHHHHHHhcccCCCcEEEEEECCH
Confidence 78999999999999999999874 356777776544
No 114
>PRK08008 caiC putative crotonobetaine/carnitine-CoA ligase; Validated
Probab=31.11 E-value=1.5e+02 Score=29.89 Aligned_cols=51 Identities=6% Similarity=-0.061 Sum_probs=32.1
Q ss_pred cCHhHHHHHHHhcCCCCCCeEEEEeCCC-cHHHHHH-HHHcCCcceEEEEecCCC
Q 018481 191 LRVDMLSLLLSMGNVAANSDVLVVDMAG-GLLTGAV-AERLGGTGYVCNTCIGDS 243 (355)
Q Consensus 191 LR~DtLa~iLs~aNV~~g~rvLV~D~~~-GLltaAv-~eRmGg~G~Vi~~~~g~~ 243 (355)
-|++.||..|.-.++.+|.+|+++-.-+ -.+++.+ +-+.|. .++.++++..
T Consensus 45 ~~v~~la~~L~~~g~~~~~~v~i~~~n~~~~~~~~la~~~~G~--~~v~l~~~~~ 97 (517)
T PRK08008 45 EEINRTANLFYSLGIRKGDKVALHLDNCPEFIFCWFGLAKIGA--IMVPINARLL 97 (517)
T ss_pred HHHHHHHHHHHHcCCCCCCEEEEEcCCCHHHHHHHHHHHHcCe--EEEEcCcccC
Confidence 4577788888888999999999997644 3333333 234432 4444555443
No 115
>COG1064 AdhP Zn-dependent alcohol dehydrogenases [General function prediction only]
Probab=30.46 E-value=82 Score=32.01 Aligned_cols=42 Identities=26% Similarity=0.292 Sum_probs=34.5
Q ss_pred HHhcCCCCCCeEEEEeCCC-cHHHHHHHHHcCCcceEEEEecCCC
Q 018481 200 LSMGNVAANSDVLVVDMAG-GLLTGAVAERLGGTGYVCNTCIGDS 243 (355)
Q Consensus 200 Ls~aNV~~g~rvLV~D~~~-GLltaAv~eRmGg~G~Vi~~~~g~~ 243 (355)
|-.+|++||.+|+|++-++ |.++.-+|..|| -.|+.+..++.
T Consensus 159 lk~~~~~pG~~V~I~G~GGlGh~avQ~Aka~g--a~Via~~~~~~ 201 (339)
T COG1064 159 LKKANVKPGKWVAVVGAGGLGHMAVQYAKAMG--AEVIAITRSEE 201 (339)
T ss_pred hhhcCCCCCCEEEEECCcHHHHHHHHHHHHcC--CeEEEEeCChH
Confidence 3468999999999999864 778888888898 78888877665
No 116
>PF04814 HNF-1_N: Hepatocyte nuclear factor 1 (HNF-1), N terminus; InterPro: IPR006899 This domain consists of the N terminus of homeobox-containing transcription factor HNF-1. This region contains a dimerisation sequence [] and an acidic region that may be involved in transcription activation. Mutations and the common Ala/Val 98 polymorphism in HNF-1 cause the type 3 form of maturity-onset diabetes of the young (MODY3) [].; GO: 0045893 positive regulation of transcription, DNA-dependent, 0005634 nucleus; PDB: 2GYP_B 1IC8_B 2H8R_B 1G2Y_D 1F93_H 1G39_D 1G2Z_B 1JB6_B.
Probab=30.24 E-value=32 Score=32.04 Aligned_cols=25 Identities=48% Similarity=0.639 Sum_probs=18.9
Q ss_pred cCCHHHHH---HHHHcCCChHHHHHHHH
Q 018481 113 CLSGEDID---EMRRQGATGEEIVEALI 137 (355)
Q Consensus 113 kLt~eeIe---~LKk~G~sG~eII~~Li 137 (355)
+||.++|+ .|++.|++-++||.+|=
T Consensus 4 ~l~~~QieLLqrL~~SG~TK~~ii~ALe 31 (180)
T PF04814_consen 4 KLTIEQIELLQRLRRSGMTKEEIIHALE 31 (180)
T ss_dssp HHHHHHHHHHHHHHHCT--HHHHHHHHT
T ss_pred cccHHHHHHHHHHHHcCCCHHHHHHHHh
Confidence 56667766 77889999999999995
No 117
>cd08300 alcohol_DH_class_III class III alcohol dehydrogenases. Members identified as glutathione-dependent formaldehyde dehydrogenase(FDH), a member of the zinc dependent/medium chain alcohol dehydrogenase family. FDH converts formaldehyde and NAD(P) to formate and NAD(P)H. The initial step in this process the spontaneous formation of a S-(hydroxymethyl)glutathione adduct from formaldehyde and glutathione, followed by FDH-mediated oxidation (and detoxification) of the adduct to S-formylglutathione. MDH family uses NAD(H) as a cofactor in the interconversion of alcohols and aldehydes or ketones. Like many zinc-dependent alcohol dehydrogenases (ADH) of the medium chain alcohol dehydrogenase/reductase family (MDR), these FDHs form dimers, with 4 zinc ions per dimer. The medium chain alcohol dehydrogenase family (MDR) have a NAD(P)(H)-binding domain in a Rossmann fold of a beta-alpha form. The N-terminal region typically has an all-beta catalytic domain. These proteins typically form dim
Probab=30.22 E-value=1.4e+02 Score=29.22 Aligned_cols=53 Identities=21% Similarity=0.243 Sum_probs=35.6
Q ss_pred HHhcCCCCCCeEEEEeCC-CcHHHHHHHHHcCCcceEEEEecCCCCChhhhHHhcCC
Q 018481 200 LSMGNVAANSDVLVVDMA-GGLLTGAVAERLGGTGYVCNTCIGDSLYPMDIVRIFNF 255 (355)
Q Consensus 200 Ls~aNV~~g~rvLV~D~~-~GLltaAv~eRmGg~G~Vi~~~~g~~p~~~~~l~~~Nf 255 (355)
...+++++|.+|||...+ -|+++..+|..+|. ..|+.+...+ ..+..++.++.
T Consensus 179 ~~~~~~~~g~~VlV~G~G~vG~~a~~~ak~~G~-~~vi~~~~~~--~~~~~~~~lGa 232 (368)
T cd08300 179 LNTAKVEPGSTVAVFGLGAVGLAVIQGAKAAGA-SRIIGIDINP--DKFELAKKFGA 232 (368)
T ss_pred HHhcCCCCCCEEEEECCCHHHHHHHHHHHHcCC-CeEEEEeCCH--HHHHHHHHcCC
Confidence 345889999999999642 26777778888763 4566664433 24556666664
No 118
>TIGR03201 dearomat_had 6-hydroxycyclohex-1-ene-1-carbonyl-CoA dehydrogenase. Members of this protein family are 6-hydroxycyclohex-1-ene-1-carbonyl-CoA dehydrogenase, an enzyme in the anaerobic metabolism of aromatic enzymes by way of benzoyl-CoA, as seen in Thauera aromatica, Geobacter metallireducens, and Azoarcus sp. The experimentally characterized form from T. aromatica uses only NAD+, not NADP+. Note that Rhodopseudomonas palustris uses a different pathway to perform a similar degradation of benzoyl-CoA to 3-hydroxpimelyl-CoA.
Probab=30.19 E-value=1.4e+02 Score=28.96 Aligned_cols=51 Identities=18% Similarity=0.236 Sum_probs=36.3
Q ss_pred HhcCCCCCCeEEEEeCCC-cHHHHHHHHHcCCcceEEEEecCCCCChhhhHHhcCC
Q 018481 201 SMGNVAANSDVLVVDMAG-GLLTGAVAERLGGTGYVCNTCIGDSLYPMDIVRIFNF 255 (355)
Q Consensus 201 s~aNV~~g~rvLV~D~~~-GLltaAv~eRmGg~G~Vi~~~~g~~p~~~~~l~~~Nf 255 (355)
..+++++|.+|||.+.+. |+++..+|..+|. .|+.+.. .+..++.++.++.
T Consensus 160 ~~~~~~~g~~VlV~G~G~vG~~a~~~a~~~G~--~vi~~~~--~~~~~~~~~~~Ga 211 (349)
T TIGR03201 160 VQAGLKKGDLVIVIGAGGVGGYMVQTAKAMGA--AVVAIDI--DPEKLEMMKGFGA 211 (349)
T ss_pred HhcCCCCCCEEEEECCCHHHHHHHHHHHHcCC--eEEEEcC--CHHHHHHHHHhCC
Confidence 457899999999998733 7788888888875 5666543 3335566666665
No 119
>PRK08245 hypothetical protein; Validated
Probab=29.84 E-value=89 Score=29.88 Aligned_cols=51 Identities=22% Similarity=0.225 Sum_probs=36.4
Q ss_pred hcCCCCCCeEEEEeCC-------CcHHHHHHHHHcCCcceEEEEecCCCCChhhhHHhcCCCH
Q 018481 202 MGNVAANSDVLVVDMA-------GGLLTGAVAERLGGTGYVCNTCIGDSLYPMDIVRIFNFSN 257 (355)
Q Consensus 202 ~aNV~~g~rvLV~D~~-------~GLltaAv~eRmGg~G~Vi~~~~g~~p~~~~~l~~~Nf~~ 257 (355)
+..+.+ +.|||+|.. -|=+.+..+.+.|..|.|+--...|. +.++.++||-
T Consensus 82 id~~~~-GdVlVid~~g~~~~a~~G~~~~~~a~~~G~~G~VidG~vRD~----~ei~~~gfPv 139 (240)
T PRK08245 82 IETCPP-GCVLVVDARGDARAGSFGDILCTRLKKRGVAGLVTDGGVRDS----PGIAALGLPV 139 (240)
T ss_pred HhccCC-CeEEEEECCCCCCccccHHHHHHHHHHCCCeEEEEeeccCCH----HHHhhCCCce
Confidence 344444 788899752 25556666788999999888776665 4678899984
No 120
>cd08237 ribitol-5-phosphate_DH ribitol-5-phosphate dehydrogenase. NAD-linked ribitol-5-phosphate dehydrogenase, a member of the MDR/zinc-dependent alcohol dehydrogenase-like family, oxidizes the phosphate ester of ribitol-5-phosphate to xylulose-5-phosphate of the pentose phosphate pathway. The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P) binding-Rossmann fold domain of a beta-alpha form and an N-terminal catalytic domain with distant homology to GroES. The MDR group contains a host of activities, including the founding alcohol dehydrogenase (
Probab=29.70 E-value=78 Score=30.81 Aligned_cols=49 Identities=8% Similarity=-0.037 Sum_probs=31.9
Q ss_pred cCCCCCCeEEEEeCCC-cHHHHHHHHHcCCcceEEEEecCCCCChhhhHHhc
Q 018481 203 GNVAANSDVLVVDMAG-GLLTGAVAERLGGTGYVCNTCIGDSLYPMDIVRIF 253 (355)
Q Consensus 203 aNV~~g~rvLV~D~~~-GLltaAv~eRmGg~G~Vi~~~~g~~p~~~~~l~~~ 253 (355)
+.+++|.+|||+..++ |++++.++.++.|-..|+.+... +..++.++.+
T Consensus 159 ~~~~~g~~VlV~G~G~vGl~~~~~a~~~~g~~~vi~~~~~--~~k~~~a~~~ 208 (341)
T cd08237 159 IAHKDRNVIGVWGDGNLGYITALLLKQIYPESKLVVFGKH--QEKLDLFSFA 208 (341)
T ss_pred cCCCCCCEEEEECCCHHHHHHHHHHHHhcCCCcEEEEeCc--HhHHHHHhhc
Confidence 4578999999998532 67777888875443567766543 3345555443
No 121
>PLN02950 4-alpha-glucanotransferase
Probab=29.53 E-value=2.8e+02 Score=31.91 Aligned_cols=126 Identities=21% Similarity=0.268 Sum_probs=76.7
Q ss_pred cccCCHHHHHHHH------------------H-cCCChHHHHHHHHhc--ccccccchhhcHHHHHHH------------
Q 018481 111 AQCLSGEDIDEMR------------------R-QGATGEEIVEALIAN--SATFEKKTSFSQEKYKLK------------ 157 (355)
Q Consensus 111 sQkLt~eeIe~LK------------------k-~G~sG~eII~~Lien--S~tF~~KT~FSQeKYlkK------------ 157 (355)
+-.||.+||+.+- + =|-...+|+++-+.. +.+|.-|.+|.-|+=|..
T Consensus 580 ~~~~s~~el~~~gl~~~~r~~~p~i~~~~l~~~fg~~~~~v~~~~~~~~~~~~y~~k~~~~te~~i~~~~~~~~~~~~~~ 659 (909)
T PLN02950 580 SIPLSQEELEQEGIWDFDRLSRPYIRQEFLQEKFGDRWTEIASNFLNEYQKGCYEFKEDCNTEKKIAAKLKRLAEKSWLL 659 (909)
T ss_pred CCCCCHHHHHhcCCccHhhhccccccHHHHHHHhcccHHHHHHHHHHhcCCCcEEeccccchHHHHHHhhccccccchhh
Confidence 4678888886442 1 133456777775443 346888999988876661
Q ss_pred ------------------------hhhccCCcEEEeCCChHH-------------HHHHHHhcCcccccccCHhHHHHHH
Q 018481 158 ------------------------KQKKYAPKVLLRRPFARS-------------ICEAYFKKNPARIGFLRVDMLSLLL 200 (355)
Q Consensus 158 ------------------------K~kKy~~~ftilkPt~~~-------------i~e~y~~KdP~KI~~LR~DtLa~iL 200 (355)
...||.++|.+.+.++.. .-+|||.++.+=-..-=...|..|+
T Consensus 660 ~~~~~~~~~l~~l~~~v~~~~d~~~~~~f~pr~~~~~~~s~~~L~~~~~~~~~~l~~~~~~~r~~~~w~~~a~~~L~~l~ 739 (909)
T PLN02950 660 EEEEKIRRGLFDLLQNVVLIRDPEDPRKFYPRFNLEDTSSFQDLDDHSKNVLKRLYYDYYFHRQEDLWRENALKTLPALL 739 (909)
T ss_pred hhHHHHHHHHHHHhhceeEEecCCCCCCcccceecccccchhhcCHHHHHHHHHHHHHHHhhcCHHHHHHHHHHHHHHHh
Confidence 235788887777665542 2356666654311111233455565
Q ss_pred HhcCCCCCCeEEEEeCCCcHHHHH---HHHHcCCcceEEEEecCC
Q 018481 201 SMGNVAANSDVLVVDMAGGLLTGA---VAERLGGTGYVCNTCIGD 242 (355)
Q Consensus 201 s~aNV~~g~rvLV~D~~~GLltaA---v~eRmGg~G~Vi~~~~g~ 242 (355)
+- ++.||+++-.|+|... +|+.||=-|.-|+-.+.+
T Consensus 740 ~~------t~ml~cgEDLG~vp~~v~~vm~~l~i~~l~iqr~~~~ 778 (909)
T PLN02950 740 NS------SDMLACGEDLGLVPACVHPVMQELGLLGLRIQRMPSE 778 (909)
T ss_pred cC------CceEEEecccCcCccchHHHHHHhCCcceEEEeccCC
Confidence 44 4489999999998654 566777666556655543
No 122
>COG1889 NOP1 Fibrillarin-like rRNA methylase [Translation, ribosomal structure and biogenesis]
Probab=28.78 E-value=94 Score=29.97 Aligned_cols=63 Identities=16% Similarity=0.178 Sum_probs=46.4
Q ss_pred HHHHHHhcC---CCCCCeEEEEeCCCcHHHHHHHHHcCCcceEEEEecCCCCC-----------hh-hhHHhcCCCHHH
Q 018481 196 LSLLLSMGN---VAANSDVLVVDMAGGLLTGAVAERLGGTGYVCNTCIGDSLY-----------PM-DIVRIFNFSNEI 259 (355)
Q Consensus 196 La~iLs~aN---V~~g~rvLV~D~~~GLltaAv~eRmGg~G~Vi~~~~g~~p~-----------~~-~~l~~~Nf~~~~ 259 (355)
-|.||.-.. |++|++||-.+..+|--+.-|+.-.| +|.||.+.-...|- |+ ++|.--++|+..
T Consensus 62 aAaIl~Gl~~~pi~~g~~VLYLGAasGTTvSHVSDIv~-~G~iYaVEfs~R~~reLl~~a~~R~Ni~PIL~DA~~P~~Y 139 (231)
T COG1889 62 AAAILKGLKNFPIKEGSKVLYLGAASGTTVSHVSDIVG-EGRIYAVEFSPRPMRELLDVAEKRPNIIPILEDARKPEKY 139 (231)
T ss_pred HHHHHcCcccCCcCCCCEEEEeeccCCCcHhHHHhccC-CCcEEEEEecchhHHHHHHHHHhCCCceeeecccCCcHHh
Confidence 466665443 68999999999999999999999888 99999997543321 22 455556666654
No 123
>COG0144 Sun tRNA and rRNA cytosine-C5-methylases [Translation, ribosomal structure and biogenesis]
Probab=28.22 E-value=1.1e+02 Score=30.88 Aligned_cols=64 Identities=19% Similarity=0.110 Sum_probs=45.3
Q ss_pred HhHHHHHHH-hcCCCCCCeEEEEeCCCcHHHHHHHHHcCCcceEEEEecCCCCChh----hhHHhcCCCH
Q 018481 193 VDMLSLLLS-MGNVAANSDVLVVDMAGGLLTGAVAERLGGTGYVCNTCIGDSLYPM----DIVRIFNFSN 257 (355)
Q Consensus 193 ~DtLa~iLs-~aNV~~g~rvLV~D~~~GLltaAv~eRmGg~G~Vi~~~~g~~p~~~----~~l~~~Nf~~ 257 (355)
.|.-||+-. ..+..||.+||-+-..-|-=|..+++.|.++|.++...+-+. ..+ ..++.+|+..
T Consensus 141 Qd~sS~l~a~~L~p~pge~VlD~cAAPGGKTthla~~~~~~~~iV~A~D~~~-~Rl~~l~~nl~RlG~~n 209 (355)
T COG0144 141 QDEASQLPALVLDPKPGERVLDLCAAPGGKTTHLAELMENEGAIVVAVDVSP-KRLKRLRENLKRLGVRN 209 (355)
T ss_pred cCHHHHHHHHHcCCCCcCEEEEECCCCCCHHHHHHHhcCCCCceEEEEcCCH-HHHHHHHHHHHHcCCCc
Confidence 445566666 779999988877766679999999999999888844444332 123 5566677664
No 124
>PRK12560 adenine phosphoribosyltransferase; Provisional
Probab=27.98 E-value=1.7e+02 Score=26.85 Aligned_cols=39 Identities=21% Similarity=0.438 Sum_probs=26.0
Q ss_pred CCCCCCeEEEEeC---CCcHHHHHH--HHHcCC--cceEEEEecCC
Q 018481 204 NVAANSDVLVVDM---AGGLLTGAV--AERLGG--TGYVCNTCIGD 242 (355)
Q Consensus 204 NV~~g~rvLV~D~---~~GLltaAv--~eRmGg--~G~Vi~~~~g~ 242 (355)
.+.+|.|||++|+ ++|-+.+++ ++..|+ -|.++.+..+.
T Consensus 110 ~~~~G~rVlIVDDvitTG~T~~~ai~ll~~aGa~vv~v~~vvd~~~ 155 (187)
T PRK12560 110 GIEKGDRVAIIDDTLSTGGTVIALIKAIENSGGIVSDVICVIEKTQ 155 (187)
T ss_pred CCCCcCEEEEEEeccccCHHHHHHHHHHHHCCCEEEEEEEEEEecc
Confidence 4679999999998 566665543 566665 34555555544
No 125
>PRK09372 ribonuclease activity regulator protein RraA; Provisional
Probab=27.63 E-value=1.3e+02 Score=27.20 Aligned_cols=51 Identities=25% Similarity=0.290 Sum_probs=36.4
Q ss_pred hcCCCCCCeEEEEeCCC-------cHHHHHHHHHcCCcceEEEEecCCCCChhhhHHhcCCCH
Q 018481 202 MGNVAANSDVLVVDMAG-------GLLTGAVAERLGGTGYVCNTCIGDSLYPMDIVRIFNFSN 257 (355)
Q Consensus 202 ~aNV~~g~rvLV~D~~~-------GLltaAv~eRmGg~G~Vi~~~~g~~p~~~~~l~~~Nf~~ 257 (355)
+..++ -+.|||+|..+ |=+.+..|...|-.|.|+.-...|.. .++.++||-
T Consensus 52 i~~~~-~GdVlVid~~g~~~~a~~G~~~~~~a~~~G~~G~VidG~vRD~~----~i~~~~~Pv 109 (159)
T PRK09372 52 LEEPG-EGRVLVVDGGGSLRRALVGDNLAELAVDNGWEGIVVYGCVRDVD----ELAELDIGI 109 (159)
T ss_pred HhcCC-CCeEEEEECCCCcCcEeehHHHHHHHHHcCCeEEEecccccCHH----HHhhCCCCe
Confidence 33444 47888998522 55666667888999999987776654 578899984
No 126
>PRK08558 adenine phosphoribosyltransferase; Provisional
Probab=27.28 E-value=1.5e+02 Score=28.40 Aligned_cols=40 Identities=23% Similarity=0.377 Sum_probs=26.9
Q ss_pred CCCCCCeEEEEeC---CCcHHHHH--HHHHcCC--cceEEEEecCCC
Q 018481 204 NVAANSDVLVVDM---AGGLLTGA--VAERLGG--TGYVCNTCIGDS 243 (355)
Q Consensus 204 NV~~g~rvLV~D~---~~GLltaA--v~eRmGg--~G~Vi~~~~g~~ 243 (355)
-+.+|.|||++|+ +||-+.++ +++..|+ -|.++.+..++.
T Consensus 172 ~l~~G~rVLIVDDvi~TG~Tl~~~~~ll~~~ga~vvgv~vlv~~~~~ 218 (238)
T PRK08558 172 ALKKGDRVLIVDDIIRSGETQRALLDLARQAGADVVGVFFLIAVGEV 218 (238)
T ss_pred HcCCcCEEEEEecccccCHHHHHHHHHHHHcCCEEEEEEEEEecCch
Confidence 3689999999999 55655443 5666676 366666666543
No 127
>cd03378 beta_CA_cladeC Carbonic anhydrases (CA) are zinc-containing enzymes that catalyze the reversible hydration of carbon dioxide in a two-step mechanism in which the nucleophilic attack of a zinc-bound hydroxide ion on carbon dioxide is followed by the regeneration of an active site by ionization of the zinc-bound water molecule and removal of a proton from the active site. CAs are ubiquitous enzymes involved in fundamental processes like photosynthesis, respiration, pH homeostasis and ion transport. There are three evolutionarily distinct families of CAs (the alpha-, beta-, and gamma-CAs) which show no significant sequence identity or structural similarity. Within the beta-CA family there are four evolutionarily distinct clades (A through D). The beta-CAs are multimeric enzymes (forming dimers,tetramers,hexamers and octamers) which are present in higher plants, algae, fungi, archaea and prokaryotes.
Probab=27.21 E-value=1.9e+02 Score=26.05 Aligned_cols=58 Identities=19% Similarity=0.156 Sum_probs=30.2
Q ss_pred HHHHHHHHhcccccccch----hhcHHHHH--HHhhhccCCcEEEeCCChHHHHHHHHhcCccccc
Q 018481 130 EEIVEALIANSATFEKKT----SFSQEKYK--LKKQKKYAPKVLLRRPFARSICEAYFKKNPARIG 189 (355)
Q Consensus 130 ~eII~~LienS~tF~~KT----~FSQeKYl--kKK~kKy~~~ftilkPt~~~i~e~y~~KdP~KI~ 189 (355)
++.+++|+++...|...+ .++++.|. .++++.+.-.++ -+..|...+.+|.-.|..+-
T Consensus 2 ~~~~~~Ll~gN~~f~~~~~~~~~~~~~~~~~l~~~q~P~~~vit--C~DsRv~~~~i~~~~~Gd~f 65 (154)
T cd03378 2 DEALERLKEGNKRFVSGKPLHPDQDLARRRELAKGQKPFAVILS--CSDSRVPPEIIFDQGLGDLF 65 (154)
T ss_pred hHHHHHHHHHHHHHHhcCccCccccHHHHHHhccCCCCcEEEEE--cCCCCCCHHHHcCCCCCCEE
Confidence 577889999888886543 12333343 334444333333 23344444555655554333
No 128
>TIGR02227 sigpep_I_bact signal peptidase I, bacterial type. A related model finds a simlar protein in many archaea and a few bacteria, as well as a microsomal (endoplasmic reticulum) protein in eukaryotes.
Probab=27.06 E-value=77 Score=28.11 Aligned_cols=55 Identities=22% Similarity=0.299 Sum_probs=26.8
Q ss_pred CCCcccCCCEEEEEecCCCeEEEEEEecCCEEEEcc----eeeeCCCccCCCCCcEEEEeCCC
Q 018481 13 NAQLTWEGCSVLLDINDGDRLVFARLTSGSTLKIGN----KNCSLQPLIGCPFGSLFQVDNGK 71 (355)
Q Consensus 13 ~~~~I~eGd~VlL~~~~g~~~~iv~l~~~~~i~lgK----~~f~l~~LIG~pyGstfEi~~~~ 71 (355)
....|..||.|++..-. +....++.|..|-+.. +..-+.-+||.| |.+.++.++.
T Consensus 30 M~Ptl~~Gd~vlv~k~~---~~~~~~~rGDiVvf~~~~~~~~~~iKRVig~p-Gd~v~i~~~~ 88 (163)
T TIGR02227 30 MEPTLKEGDRILVNKFA---YGTSDPKRGDIVVFKDPDDNKNIYVKRVIGLP-GDKVEFRDGK 88 (163)
T ss_pred cccchhCCCEEEEEEeE---cCCCCCCCCcEEEEecCCCCCceeEEEEEecC-CCEEEEECCE
Confidence 44567778877776410 0001122222222211 234455677776 7777776653
No 129
>COG2230 Cfa Cyclopropane fatty acid synthase and related methyltransferases [Cell envelope biogenesis, outer membrane]
Probab=27.04 E-value=75 Score=31.53 Aligned_cols=59 Identities=17% Similarity=0.148 Sum_probs=43.9
Q ss_pred HHHHHHhcCCCCCCeEEEEeCCCcHHHHHHHHHcCCcceEEEEecCCCCC--hhhhHHhcCCC
Q 018481 196 LSLLLSMGNVAANSDVLVVDMAGGLLTGAVAERLGGTGYVCNTCIGDSLY--PMDIVRIFNFS 256 (355)
Q Consensus 196 La~iLs~aNV~~g~rvLV~D~~~GLltaAv~eRmGg~G~Vi~~~~g~~p~--~~~~l~~~Nf~ 256 (355)
+-.++-.+++.||.++|.++.+-|.++-.+|++-| .+|+.+-...... .-..++.+++.
T Consensus 61 ~~~~~~kl~L~~G~~lLDiGCGWG~l~~~aA~~y~--v~V~GvTlS~~Q~~~~~~r~~~~gl~ 121 (283)
T COG2230 61 LDLILEKLGLKPGMTLLDIGCGWGGLAIYAAEEYG--VTVVGVTLSEEQLAYAEKRIAARGLE 121 (283)
T ss_pred HHHHHHhcCCCCCCEEEEeCCChhHHHHHHHHHcC--CEEEEeeCCHHHHHHHHHHHHHcCCC
Confidence 57889999999999999999988888888888874 4677666543211 11446677777
No 130
>TIGR03587 Pse_Me-ase pseudaminic acid biosynthesis-associated methylase. Members of this small clade are methyltransferases of the pfam08241 family and are observed within operons for the biosynthesis of pseudaminic acid, a component of exopolysaccharide and flagellin glycosyl modifications. Notable among these genomes is Pseudomonas fluorescens PfO-1. Possibly one of the two hydroxyl groups of pseudaminic acid, at positions 4 and 8 is converted to a methoxy group by this enzyme
Probab=27.03 E-value=1.8e+02 Score=26.79 Aligned_cols=37 Identities=14% Similarity=0.077 Sum_probs=30.3
Q ss_pred CCCCCCeEEEEeCCCcHHHHHHHHHcCCcceEEEEecC
Q 018481 204 NVAANSDVLVVDMAGGLLTGAVAERLGGTGYVCNTCIG 241 (355)
Q Consensus 204 NV~~g~rvLV~D~~~GLltaAv~eRmGg~G~Vi~~~~g 241 (355)
-+.++.+||.++.+.|.++..+++++++ +.|+.+...
T Consensus 40 ~~~~~~~VLDiGCG~G~~~~~L~~~~~~-~~v~giDiS 76 (204)
T TIGR03587 40 RLPKIASILELGANIGMNLAALKRLLPF-KHIYGVEIN 76 (204)
T ss_pred hcCCCCcEEEEecCCCHHHHHHHHhCCC-CeEEEEECC
Confidence 3567889999999999999999887754 678888653
No 131
>cd08281 liver_ADH_like1 Zinc-dependent alcohol dehydrogenases (ADH) and class III ADG (AKA formaldehyde dehydrogenase). NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes or ketones. This group contains members identified as zinc dependent alcohol dehydrogenases (ADH), and class III ADG (aka formaldehyde dehydrogenase, FDH). Alcohol dehydrogenase in the liver converts ethanol and NAD+ to acetaldehyde and NADH, while in yeast and some other microorganisms ADH catalyzes the conversion acetaldehyde to ethanol in alcoholic fermentation. NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes or ketones. Alcohol dehydrogenase in the liver converts ethanol and NAD+ to acetaldehyde and NADH, while in yeast and some other microorganisms ADH catalyzes the conversion acetaldehyde to ethanol in alcoholic fermentation. Class III ADH are also know as glutathione-dependent formaldehyde dehyd
Probab=26.91 E-value=1.7e+02 Score=28.79 Aligned_cols=53 Identities=19% Similarity=0.165 Sum_probs=35.4
Q ss_pred HHhcCCCCCCeEEEEeCC-CcHHHHHHHHHcCCcceEEEEecCCCCChhhhHHhcCC
Q 018481 200 LSMGNVAANSDVLVVDMA-GGLLTGAVAERLGGTGYVCNTCIGDSLYPMDIVRIFNF 255 (355)
Q Consensus 200 Ls~aNV~~g~rvLV~D~~-~GLltaAv~eRmGg~G~Vi~~~~g~~p~~~~~l~~~Nf 255 (355)
...+++++|.+|||...+ -|+++..+|..+|. ..|+.+.. .+..++.++.++.
T Consensus 184 ~~~~~i~~g~~VlV~G~G~vG~~a~~lak~~G~-~~Vi~~~~--~~~r~~~a~~~Ga 237 (371)
T cd08281 184 VNTAGVRPGQSVAVVGLGGVGLSALLGAVAAGA-SQVVAVDL--NEDKLALARELGA 237 (371)
T ss_pred HhccCCCCCCEEEEECCCHHHHHHHHHHHHcCC-CcEEEEcC--CHHHHHHHHHcCC
Confidence 356889999999998752 26777778887754 34665543 3335566666665
No 132
>PRK05500 bifunctional orotidine 5'-phosphate decarboxylase/orotate phosphoribosyltransferase protein; Validated
Probab=26.88 E-value=1.5e+02 Score=31.42 Aligned_cols=52 Identities=19% Similarity=0.188 Sum_probs=34.8
Q ss_pred cCCCCCCeEEEEeC---CCcHH--HHHHHHHcCC--cceEEEEecCCCCChhhhHHhcCCC
Q 018481 203 GNVAANSDVLVVDM---AGGLL--TGAVAERLGG--TGYVCNTCIGDSLYPMDIVRIFNFS 256 (355)
Q Consensus 203 aNV~~g~rvLV~D~---~~GLl--taAv~eRmGg--~G~Vi~~~~g~~p~~~~~l~~~Nf~ 256 (355)
+++.+|.|||+||+ +||-+ +..++++.|+ .|.++.+..++. ..+.|+.+|++
T Consensus 388 G~~~~G~rVlIVDDViTTGgSi~eaie~l~~aG~~V~~v~vlVDR~~g--~~~~L~~~gv~ 446 (477)
T PRK05500 388 GNFHPGETVVVVDDILITGKSVMEGAEKLKSAGLNVRDIVVFIDHEQG--VKDKLQSHGYQ 446 (477)
T ss_pred cCCCCcCEEEEEEeccccCHHHHHHHHHHHHCCCEEEEEEEEEECCcc--hHHHHHhcCCC
Confidence 45678999999998 55555 3444566675 566777777653 23567777765
No 133
>PF05175 MTS: Methyltransferase small domain; InterPro: IPR007848 This domain is found in ribosomal RNA small subunit methyltransferase C and in other methyltransferases.; GO: 0008168 methyltransferase activity; PDB: 1WY7_A 1DUS_A 2OZV_A 2PJD_A 1VQ1_A 1NV9_A 1SG9_C 1NV8_A 3Q87_B 3DMF_A ....
Probab=26.75 E-value=99 Score=27.26 Aligned_cols=50 Identities=28% Similarity=0.284 Sum_probs=34.3
Q ss_pred cCHhHHH-HHHHhcCCCCCCeEEEEeCCCcHHHHHHHHHcCCcceEEEEecC
Q 018481 191 LRVDMLS-LLLSMGNVAANSDVLVVDMAGGLLTGAVAERLGGTGYVCNTCIG 241 (355)
Q Consensus 191 LR~DtLa-~iLs~aNV~~g~rvLV~D~~~GLltaAv~eRmGg~G~Vi~~~~g 241 (355)
.|.|.-+ +|+....-..++++|.+++++|+++.+++.+ +..-+|+.+...
T Consensus 14 ~~~d~~t~lL~~~l~~~~~~~vLDlG~G~G~i~~~la~~-~~~~~v~~vDi~ 64 (170)
T PF05175_consen 14 PRLDAGTRLLLDNLPKHKGGRVLDLGCGSGVISLALAKR-GPDAKVTAVDIN 64 (170)
T ss_dssp TSHHHHHHHHHHHHHHHTTCEEEEETSTTSHHHHHHHHT-STCEEEEEEESB
T ss_pred CCCCHHHHHHHHHHhhccCCeEEEecCChHHHHHHHHHh-CCCCEEEEEcCC
Confidence 3444333 3333344448899999999999999998876 455567777654
No 134
>PRK00121 trmB tRNA (guanine-N(7)-)-methyltransferase; Reviewed
Probab=26.70 E-value=1.1e+02 Score=27.95 Aligned_cols=53 Identities=11% Similarity=-0.016 Sum_probs=40.1
Q ss_pred CcccccccCHhHHHHHHHhcCCCCCCeEEEEeCCCcHHHHHHHHHcCCcceEEEEecCC
Q 018481 184 NPARIGFLRVDMLSLLLSMGNVAANSDVLVVDMAGGLLTGAVAERLGGTGYVCNTCIGD 242 (355)
Q Consensus 184 dP~KI~~LR~DtLa~iLs~aNV~~g~rvLV~D~~~GLltaAv~eRmGg~G~Vi~~~~g~ 242 (355)
+-..|..++.+.+..+-. ++.++|.++.+.|.++..++.++ +.+.|+.+....
T Consensus 22 ~~~~~~~~~~~~~~~~~~-----~~~~VLDiGcGtG~~~~~la~~~-p~~~v~gVD~s~ 74 (202)
T PRK00121 22 LWPRLSPAPLDWAELFGN-----DAPIHLEIGFGKGEFLVEMAKAN-PDINFIGIEVHE 74 (202)
T ss_pred cchhhcCCCCCHHHHcCC-----CCCeEEEEccCCCHHHHHHHHHC-CCccEEEEEech
Confidence 334566777777766553 67899999999999999999876 446788887654
No 135
>TIGR02825 B4_12hDH leukotriene B4 12-hydroxydehydrogenase/15-oxo-prostaglandin 13-reductase. Leukotriene B4 12-hydroxydehydrogenase is an NADP-dependent enzyme of arachidonic acid metabolism, responsible for converting leukotriene B4 to the much less active metabolite 12-oxo-leukotriene B4. The BRENDA database lists leukotriene B4 12-hydroxydehydrogenase as one of the synonyms of 2-alkenal reductase (EC 1.3.1.74), while 1.3.1.48 is 15-oxoprostaglandin 13-reductase.
Probab=26.60 E-value=1.9e+02 Score=27.47 Aligned_cols=52 Identities=21% Similarity=0.247 Sum_probs=36.0
Q ss_pred HHhcCCCCCCeEEEEeCC--CcHHHHHHHHHcCCcceEEEEecCCCCChhhhHHhcCC
Q 018481 200 LSMGNVAANSDVLVVDMA--GGLLTGAVAERLGGTGYVCNTCIGDSLYPMDIVRIFNF 255 (355)
Q Consensus 200 Ls~aNV~~g~rvLV~D~~--~GLltaAv~eRmGg~G~Vi~~~~g~~p~~~~~l~~~Nf 255 (355)
...+++++|.+||+...+ -|.++..++..+|- +|+.+... +.....++.++.
T Consensus 131 ~~~~~~~~g~~VLI~ga~g~vG~~aiqlAk~~G~--~Vi~~~~s--~~~~~~~~~lGa 184 (325)
T TIGR02825 131 LEICGVKGGETVMVNAAAGAVGSVVGQIAKLKGC--KVVGAAGS--DEKVAYLKKLGF 184 (325)
T ss_pred HHHhCCCCCCEEEEeCCccHHHHHHHHHHHHcCC--EEEEEeCC--HHHHHHHHHcCC
Confidence 357899999999999853 47777888888875 46655433 224456666665
No 136
>COG2897 SseA Rhodanese-related sulfurtransferase [Inorganic ion transport and metabolism]
Probab=26.54 E-value=1.3e+02 Score=29.86 Aligned_cols=52 Identities=19% Similarity=0.173 Sum_probs=39.3
Q ss_pred cccccCHhHHHHHHHhcCCCCCCeEEEEeCCCcHHHH---HHHHHcCCcceEEEEe
Q 018481 187 RIGFLRVDMLSLLLSMGNVAANSDVLVVDMAGGLLTG---AVAERLGGTGYVCNTC 239 (355)
Q Consensus 187 KI~~LR~DtLa~iLs~aNV~~g~rvLV~D~~~GLlta---Av~eRmGg~G~Vi~~~ 239 (355)
.=+....+.|+.+|.-.+|..+..|+|+|..+|+-++ .++..|| .=.|..++
T Consensus 69 ~~~lp~~e~fa~~~~~~GI~~d~tVVvYdd~~~~~A~ra~W~l~~~G-h~~V~iLd 123 (285)
T COG2897 69 PHMLPSPEQFAKLLGELGIRNDDTVVVYDDGGGFFAARAWWLLRYLG-HENVRILD 123 (285)
T ss_pred CCCCCCHHHHHHHHHHcCCCCCCEEEEECCCCCeehHHHHHHHHHcC-CCceEEec
Confidence 4556667899999999999999999999998887754 4455554 44455554
No 137
>TIGR00406 prmA ribosomal protein L11 methyltransferase. Ribosomal protein L11 methyltransferase is an S-adenosyl-L-methionine-dependent methyltransferase required for the modification of ribosomal protein L11. This protein is found in bacteria and (with a probable transit peptide) in Arabidopsis.
Probab=25.90 E-value=1.3e+02 Score=29.13 Aligned_cols=36 Identities=25% Similarity=0.304 Sum_probs=28.3
Q ss_pred CCCCCeEEEEeCCCcHHHHHHHHHcCCcceEEEEecCC
Q 018481 205 VAANSDVLVVDMAGGLLTGAVAERLGGTGYVCNTCIGD 242 (355)
Q Consensus 205 V~~g~rvLV~D~~~GLltaAv~eRmGg~G~Vi~~~~g~ 242 (355)
+.+|.+||.+++++|.++.+++. +| .+.|+.+....
T Consensus 157 ~~~g~~VLDvGcGsG~lai~aa~-~g-~~~V~avDid~ 192 (288)
T TIGR00406 157 DLKDKNVIDVGCGSGILSIAALK-LG-AAKVVGIDIDP 192 (288)
T ss_pred cCCCCEEEEeCCChhHHHHHHHH-cC-CCeEEEEECCH
Confidence 56899999999999999887764 54 46888877543
No 138
>PF13847 Methyltransf_31: Methyltransferase domain; PDB: 3T0I_B 3SVZ_B 3SXJ_A 3F4K_A 3GU3_B 2GH1_A 1R8Y_E 1R8X_B 2B3T_A 1T43_A ....
Probab=25.68 E-value=1.5e+02 Score=25.24 Aligned_cols=37 Identities=19% Similarity=0.221 Sum_probs=31.7
Q ss_pred CCCCeEEEEeCCCcHHHHHHHHHcCCcceEEEEecCC
Q 018481 206 AANSDVLVVDMAGGLLTGAVAERLGGTGYVCNTCIGD 242 (355)
Q Consensus 206 ~~g~rvLV~D~~~GLltaAv~eRmGg~G~Vi~~~~g~ 242 (355)
+.+.+||-++.+.|.++-.++++++..+.|+.+....
T Consensus 2 ~~~~~iLDlGcG~G~~~~~l~~~~~~~~~i~gvD~s~ 38 (152)
T PF13847_consen 2 KSNKKILDLGCGTGRLLIQLAKELNPGAKIIGVDISE 38 (152)
T ss_dssp TTTSEEEEET-TTSHHHHHHHHHSTTTSEEEEEESSH
T ss_pred CCCCEEEEecCcCcHHHHHHHHhcCCCCEEEEEECcH
Confidence 4678999999999999999999999889999988654
No 139
>PLN00416 carbonate dehydratase
Probab=25.57 E-value=1.6e+02 Score=28.83 Aligned_cols=102 Identities=15% Similarity=0.201 Sum_probs=58.2
Q ss_pred HHHHcCCChHHHHHHHHhcccccccchhhcHHHHHHHhhhccCCcEEEeCC-ChHHHHHHHHhcCcccccccCH------
Q 018481 121 EMRRQGATGEEIVEALIANSATFEKKTSFSQEKYKLKKQKKYAPKVLLRRP-FARSICEAYFKKNPARIGFLRV------ 193 (355)
Q Consensus 121 ~LKk~G~sG~eII~~LienS~tF~~KT~FSQeKYlkKK~kKy~~~ftilkP-t~~~i~e~y~~KdP~KI~~LR~------ 193 (355)
.|+..-.+.++.+++|+++...|.....-.+..|.++-.+.-.+...++-+ ..|-.-+.+|...|.=+--+|.
T Consensus 37 ~~~~~~~~~~~al~~Ll~Gn~rF~~~~~~~~~~~~~~la~gQ~P~alvI~CsDSRV~pe~If~~~pGDlFVvRNaGNiV~ 116 (258)
T PLN00416 37 ELKELDSSNSDAIERIKTGFTQFKTEKYLKNSTLFNHLAKTQTPKFLVFACSDSRVCPSHILNFQPGEAFVVRNIANMVP 116 (258)
T ss_pred HHHHhhcCHHHHHHHHHHHHHHHHhcccccCHHHHHhhccCCCCCEEEEEecCCCCCHHHHcCCCCCCEEEEeccccccC
Confidence 344555679999999999999998765222223334333344444555533 4444456777766643322222
Q ss_pred --------h---HHHHHHHhcCCCCCCeEEEEeCCC-cHHHHHH
Q 018481 194 --------D---MLSLLLSMGNVAANSDVLVVDMAG-GLLTGAV 225 (355)
Q Consensus 194 --------D---tLa~iLs~aNV~~g~rvLV~D~~~-GLltaAv 225 (355)
. +|-+-....+| ..|+|++++. |.+.|++
T Consensus 117 ~~d~~~~~~~~asLEyAv~~L~V---~~IVV~GHs~CGaV~Aa~ 157 (258)
T PLN00416 117 PFDQKRHSGVGAAVEYAVVHLKV---ENILVIGHSCCGGIKGLM 157 (258)
T ss_pred CccccccccchhHHHHHHHHhCC---CEEEEecCCCchHHHHHH
Confidence 1 23334444455 3788888853 5556655
No 140
>cd08294 leukotriene_B4_DH_like 13-PGR is a bifunctional enzyme with delta-13 15-prostaglandin reductase and leukotriene B4 12 hydroxydehydrogenase activity. Prostaglandins and related eicosanoids are metabolized by the oxidation of the 15(S)-hydroxyl group of the NAD+-dependent (type I 15-PGDH) 15-prostaglandin dehydrogenase (15-PGDH) followed by reduction by NADPH/NADH-dependent (type II 15-PGDH) delta-13 15-prostaglandin reductase (13-PGR) to 15-keto- 13,14,-dihydroprostaglandins. 13-PGR is a bifunctional enzyme, since it also has leukotriene B(4) 12-hydroxydehydrogenase activity. These 15-PGDH and related enzymes are members of the medium chain dehydrogenase/reductase family. The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of ac
Probab=25.46 E-value=2.1e+02 Score=26.86 Aligned_cols=51 Identities=24% Similarity=0.254 Sum_probs=34.6
Q ss_pred HhcCCCCCCeEEEEeCCC--cHHHHHHHHHcCCcceEEEEecCCCCChhhhHHhcCC
Q 018481 201 SMGNVAANSDVLVVDMAG--GLLTGAVAERLGGTGYVCNTCIGDSLYPMDIVRIFNF 255 (355)
Q Consensus 201 s~aNV~~g~rvLV~D~~~--GLltaAv~eRmGg~G~Vi~~~~g~~p~~~~~l~~~Nf 255 (355)
..+++++|.++||.+.++ |..+..+|..+|- .|+.+... +...+.++.++.
T Consensus 137 ~~~~~~~g~~vlI~ga~g~vG~~aiqlA~~~G~--~vi~~~~s--~~~~~~l~~~Ga 189 (329)
T cd08294 137 EICKPKAGETVVVNGAAGAVGSLVGQIAKIKGC--KVIGCAGS--DDKVAWLKELGF 189 (329)
T ss_pred HhcCCCCCCEEEEecCccHHHHHHHHHHHHcCC--EEEEEeCC--HHHHHHHHHcCC
Confidence 568899999999998654 6666678888875 46555432 234566666664
No 141
>PF04079 DUF387: Putative transcriptional regulators (Ypuh-like); InterPro: IPR005234 This family represents ScpB, which along with ScpA (IPR003768 from INTERPRO) interacts with SMC in vivo forming a complex that is required for chromosome condensation and segregation [, ]. The SMC-Scp complex appears to be similar to the MukB-MukE-Muk-F complex in Escherichia coli [], where MukB (IPR007406 from INTERPRO) is the homologue of SMC. ScpA and ScpB have little sequence similarity to MukE (IPR007385 from INTERPRO) or MukF (IPR005582 from INTERPRO), they are predicted to be structurally similar, being predominantly alpha-helical with coiled coil regions. In general scpA and scpB form an operon in most bacterial genomes. Flanking genes are highly variable suggesting that the operon has moved throughout evolution. Bacteria containing an smc gene also contain scpA or scpB but not necessarily both. An exception is found in Deinococcus radiodurans, which contains scpB but neither smc nor scpA. In the archaea the gene order SMC-ScpA is conserved in nearly all species, as is the very short distance between the two genes, indicating co-transcription of the both in different archaeal genera and arguing that interaction of the gene products is not confined to the homologues in Bacillus subtilis. It would seem probable that, in light of all the studies, SMC, ScpA and ScpB proteins or homologues act together in chromosome condensation and segregation in all prokaryotes []. ; GO: 0051304 chromosome separation; PDB: 1T6S_B 2Z99_A.
Probab=24.67 E-value=47 Score=30.03 Aligned_cols=26 Identities=23% Similarity=0.616 Sum_probs=21.0
Q ss_pred cccCCHHHHHHHHHcCCChHHHHHHHHh
Q 018481 111 AQCLSGEDIDEMRRQGATGEEIVEALIA 138 (355)
Q Consensus 111 sQkLt~eeIe~LKk~G~sG~eII~~Lie 138 (355)
.|+.|..||+++| |++...+|++|++
T Consensus 94 ~QPiTr~eIe~IR--Gv~s~~~i~~L~e 119 (159)
T PF04079_consen 94 KQPITRAEIEEIR--GVNSDSVIKTLLE 119 (159)
T ss_dssp H-SEEHHHHHHHH--TS--HCHHHHHHH
T ss_pred cCCcCHHHHHHHc--CCChHHHHHHHHH
Confidence 4999999999998 7889999999996
No 142
>PRK11207 tellurite resistance protein TehB; Provisional
Probab=24.23 E-value=1.5e+02 Score=26.85 Aligned_cols=40 Identities=18% Similarity=-0.003 Sum_probs=31.1
Q ss_pred HHHHhcCCCCCCeEEEEeCCCcHHHHHHHHHcCCcceEEEEec
Q 018481 198 LLLSMGNVAANSDVLVVDMAGGLLTGAVAERLGGTGYVCNTCI 240 (355)
Q Consensus 198 ~iLs~aNV~~g~rvLV~D~~~GLltaAv~eRmGg~G~Vi~~~~ 240 (355)
.++.+.+..+++++|.++.+.|..+..++++ | ..|+.+..
T Consensus 21 ~l~~~l~~~~~~~vLDiGcG~G~~a~~La~~-g--~~V~gvD~ 60 (197)
T PRK11207 21 EVLEAVKVVKPGKTLDLGCGNGRNSLYLAAN-G--FDVTAWDK 60 (197)
T ss_pred HHHHhcccCCCCcEEEECCCCCHHHHHHHHC-C--CEEEEEeC
Confidence 4555567778899999999999999999987 3 26666654
No 143
>TIGR00762 DegV EDD domain protein, DegV family. This family of proteins is related to DegV of Bacillus subtilis and includes paralogous sets in several species (B. subtilis, Deinococcus radiodurans, Mycoplasma pneumoniae) that are closer in percent identity to each than to most homologs from other species. This suggests both recent paralogy and diversity of function. DegV itself is encoded immediately downstream of DegU, a transcriptional regulator of degradation, but is itself uncharacterized. Crystallography suggested a lipid-binding site, while comparison of the crystal structure to dihydroxyacetone kinase and to a mannose transporter EIIA domain suggests a conserved domain, EDD, with phosphotransferase activity.
Probab=24.23 E-value=4.3e+02 Score=25.33 Aligned_cols=110 Identities=16% Similarity=0.181 Sum_probs=69.3
Q ss_pred ccccccCcc---cccCCHHHHHHHHHcCCChHHHHHHHHhcccccccchhhcHHHHHHHhhhccCCcEEEeCCChHHHHH
Q 018481 102 NRAIVDDNK---AQCLSGEDIDEMRRQGATGEEIVEALIANSATFEKKTSFSQEKYKLKKQKKYAPKVLLRRPFARSICE 178 (355)
Q Consensus 102 Nr~i~Dd~~---sQkLt~eeIe~LKk~G~sG~eII~~LienS~tF~~KT~FSQeKYlkKK~kKy~~~ftilkPt~~~i~e 178 (355)
|=.++|..+ .|.+--.++.+|.++|.+-+||++.|-+ .+.+..-+|.+ .++..
T Consensus 108 ~i~ViDS~~~s~~~g~~v~~a~~~~~~G~s~~eI~~~l~~-------------------~~~~~~~~f~v--~~L~~--- 163 (275)
T TIGR00762 108 KVTVIDSKSASMGLGLLVLEAAKLAEEGKSLEEILAKLEE-------------------LRERTKLYFVV--DTLEY--- 163 (275)
T ss_pred CEEEECChHHHHHHHHHHHHHHHHHHcCCCHHHHHHHHHH-------------------HHhhcEEEEEE--CcHHH---
Confidence 455778764 4999999999999999999999987752 22222223333 23331
Q ss_pred HHHhcCcccccccCHhHHHHHHHhcCCCC-----CCeEEEEeCCCc------HHHHHHHHHcCC--cceEEEEecCC
Q 018481 179 AYFKKNPARIGFLRVDMLSLLLSMGNVAA-----NSDVLVVDMAGG------LLTGAVAERLGG--TGYVCNTCIGD 242 (355)
Q Consensus 179 ~y~~KdP~KI~~LR~DtLa~iLs~aNV~~-----g~rvLV~D~~~G------LltaAv~eRmGg--~G~Vi~~~~g~ 242 (355)
+.+ -.||.. +.|.+.++-||+| +|++-+++-+-| -+...+.++++. ...++..|.++
T Consensus 164 --L~~-gGRis~----~~~~~g~lL~ikPIi~~~~G~i~~~~k~Rg~kka~~~l~~~~~~~~~~~~~~~i~i~~~~~ 233 (275)
T TIGR00762 164 --LVK-GGRISK----AAALIGSLLNIKPILTVDDGKLVPIEKVRGRKKAIKKLVELVKEDIKDGKPKRVAIIHADA 233 (275)
T ss_pred --HHh-cCCccH----HHHHHHHhhcceeEEEEeCCEEEEeeccccHHHHHHHHHHHHHHhhccCCCcEEEEEeCCC
Confidence 222 223322 3566777779987 677778888776 455666666653 24555566554
No 144
>PRK15068 tRNA mo(5)U34 methyltransferase; Provisional
Probab=24.18 E-value=1.7e+02 Score=29.05 Aligned_cols=41 Identities=17% Similarity=0.051 Sum_probs=30.3
Q ss_pred HHHHhcCCCCCCeEEEEeCCCcHHHHHHHHHcCCcceEEEEec
Q 018481 198 LLLSMGNVAANSDVLVVDMAGGLLTGAVAERLGGTGYVCNTCI 240 (355)
Q Consensus 198 ~iLs~aNV~~g~rvLV~D~~~GLltaAv~eRmGg~G~Vi~~~~ 240 (355)
.++.+.+.-+|.+||.++.+.|..+..++++ |.+.|+.+.+
T Consensus 113 ~l~~~l~~l~g~~VLDIGCG~G~~~~~la~~--g~~~V~GiD~ 153 (322)
T PRK15068 113 RVLPHLSPLKGRTVLDVGCGNGYHMWRMLGA--GAKLVVGIDP 153 (322)
T ss_pred HHHHhhCCCCCCEEEEeccCCcHHHHHHHHc--CCCEEEEEcC
Confidence 3344445456899999999999999988886 4456777763
No 145
>PF06325 PrmA: Ribosomal protein L11 methyltransferase (PrmA); InterPro: IPR010456 This family consists of several Ribosomal protein L11 methyltransferase sequences. Its genetic determinant is prmA, which forms a bifunctional operon with the downstream panF gene []. The role of L11 methylation in ribosome function is, as yet, unknown. Deletion of the prmA gene in Escherichia coli showed no obvious effect [] except for the production of undermethylated forms of L11 []. Methylation is the most common post-transcriptional modification to ribosomal proteins in all organisms. PrmA is the only bacterial enzyme that catalyses the methylation of a ribosomal protein [].; GO: 0008276 protein methyltransferase activity, 0006479 protein methylation, 0005737 cytoplasm; PDB: 3GRZ_B 1F3L_A 2NXJ_B 3CJT_I 3CJQ_G 2NXE_A 2NXC_A 2ZBP_A 3EGV_A 3CJS_A ....
Probab=24.09 E-value=1.9e+02 Score=28.59 Aligned_cols=35 Identities=34% Similarity=0.382 Sum_probs=27.0
Q ss_pred CCCCCeEEEEeCCCcHHHHHHHHHcCCcceEEEEecC
Q 018481 205 VAANSDVLVVDMAGGLLTGAVAERLGGTGYVCNTCIG 241 (355)
Q Consensus 205 V~~g~rvLV~D~~~GLltaAv~eRmGg~G~Vi~~~~g 241 (355)
+.+|.+||-+++++|+|+-|.+ ++ |-+.|+.+...
T Consensus 159 ~~~g~~vLDvG~GSGILaiaA~-kl-GA~~v~a~DiD 193 (295)
T PF06325_consen 159 VKPGKRVLDVGCGSGILAIAAA-KL-GAKKVVAIDID 193 (295)
T ss_dssp SSTTSEEEEES-TTSHHHHHHH-HT-TBSEEEEEESS
T ss_pred ccCCCEEEEeCCcHHHHHHHHH-Hc-CCCeEEEecCC
Confidence 7889999999999999977664 46 44688888753
No 146
>PRK00517 prmA ribosomal protein L11 methyltransferase; Reviewed
Probab=24.05 E-value=1.5e+02 Score=27.90 Aligned_cols=35 Identities=34% Similarity=0.368 Sum_probs=27.1
Q ss_pred CCCCCeEEEEeCCCcHHHHHHHHHcCCcceEEEEecC
Q 018481 205 VAANSDVLVVDMAGGLLTGAVAERLGGTGYVCNTCIG 241 (355)
Q Consensus 205 V~~g~rvLV~D~~~GLltaAv~eRmGg~G~Vi~~~~g 241 (355)
+.+|.+||.+++++|.++.+++ ++|. +.|+.+...
T Consensus 117 ~~~~~~VLDiGcGsG~l~i~~~-~~g~-~~v~giDis 151 (250)
T PRK00517 117 VLPGKTVLDVGCGSGILAIAAA-KLGA-KKVLAVDID 151 (250)
T ss_pred cCCCCEEEEeCCcHHHHHHHHH-HcCC-CeEEEEECC
Confidence 6789999999999998887654 4554 468877654
No 147
>TIGR00281 segregation and condensation protein B. Shown to be required for chromosome segregation and condensation in B. subtilis.
Probab=23.45 E-value=83 Score=29.22 Aligned_cols=26 Identities=31% Similarity=0.543 Sum_probs=22.9
Q ss_pred cccCCHHHHHHHHHcCCChHHHHHHHHh
Q 018481 111 AQCLSGEDIDEMRRQGATGEEIVEALIA 138 (355)
Q Consensus 111 sQkLt~eeIe~LKk~G~sG~eII~~Lie 138 (355)
.|+.|..||+++| |++...+|++|++
T Consensus 99 ~QPITr~eIe~IR--Gv~s~~~l~~L~e 124 (186)
T TIGR00281 99 KQPITRARINEIR--GVKSYQIVDDLVE 124 (186)
T ss_pred cCCcCHHHHHHHc--CCCHHHHHHHHHH
Confidence 4999999999997 6667899999996
No 148
>PRK11493 sseA 3-mercaptopyruvate sulfurtransferase; Provisional
Probab=23.21 E-value=1.6e+02 Score=28.24 Aligned_cols=49 Identities=14% Similarity=0.137 Sum_probs=35.8
Q ss_pred CHhHHHHHHHhcCCCCCCeEEEEeCCCcH---HHHHHHHHcCCcceEEEEecCC
Q 018481 192 RVDMLSLLLSMGNVAANSDVLVVDMAGGL---LTGAVAERLGGTGYVCNTCIGD 242 (355)
Q Consensus 192 R~DtLa~iLs~aNV~~g~rvLV~D~~~GL---ltaAv~eRmGg~G~Vi~~~~g~ 242 (355)
+.+.|..++.-.+|.++..|++++.+++. .++.+++++|-. .|. ++.|.
T Consensus 71 ~~~~~~~~~~~~Gi~~d~~VVvyc~~~~~~a~~~~~~l~~~G~~-~v~-~l~GG 122 (281)
T PRK11493 71 RPETFAVAMRELGVNQDKHLVVYDEGNLFSAPRAWWMLRTFGVE-KVS-ILAGG 122 (281)
T ss_pred CHHHHHHHHHHcCCCCCCEEEEECCCCCchHHHHHHHHHHhcCC-cEE-EcCCC
Confidence 46889999999999999999999986552 345677777643 444 55444
No 149
>cd08264 Zn_ADH_like2 Alcohol dehydrogenases of the MDR family. This group resembles the zinc-dependent alcohol dehydrogenases of the medium chain dehydrogenase family. However, this subgroup does not contain the characteristic catalytic zinc site. Also, it contains an atypical structural zinc-binding pattern: DxxCxxCxxxxxxxC. NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes, or ketones. Alcohol dehydrogenase in the liver converts ethanol and NAD+ to acetaldehyde and NADH, while in yeast and some other microorganisms ADH catalyzes the conversion acetaldehyde to ethanol in alcoholic fermentation. ADH is a member of the medium chain alcohol dehydrogenase family (MDR), which has a NAD(P)(H)-binding domain in a Rossmann fold of a beta-alpha form. The NAD(H)-binding region is comprised of 2 structurally similar halves, each of which contacts a mononucleotide. A GxGxxG motif after the first mononucleotide contact half allows the clo
Probab=23.13 E-value=2e+02 Score=27.15 Aligned_cols=37 Identities=19% Similarity=0.359 Sum_probs=28.5
Q ss_pred HHhcCCCCCCeEEEEeCC--CcHHHHHHHHHcCCcceEEEE
Q 018481 200 LSMGNVAANSDVLVVDMA--GGLLTGAVAERLGGTGYVCNT 238 (355)
Q Consensus 200 Ls~aNV~~g~rvLV~D~~--~GLltaAv~eRmGg~G~Vi~~ 238 (355)
+..+++++|.++||.+.+ -|+.++.+|..+|.. |+.+
T Consensus 155 l~~~~~~~g~~vlI~g~~g~vg~~~~~~a~~~G~~--v~~~ 193 (325)
T cd08264 155 LKTAGLGPGETVVVFGASGNTGIFAVQLAKMMGAE--VIAV 193 (325)
T ss_pred HHhcCCCCCCEEEEECCCchHHHHHHHHHHHcCCe--EEEE
Confidence 344899999999999864 488888899999863 5544
No 150
>PLN02723 3-mercaptopyruvate sulfurtransferase
Probab=22.63 E-value=1.4e+02 Score=29.36 Aligned_cols=46 Identities=15% Similarity=0.067 Sum_probs=33.9
Q ss_pred CHhHHHHHHHhcCCCCCCeEEEEeCCCcHHH---HHHHHHcCCcceEEEE
Q 018481 192 RVDMLSLLLSMGNVAANSDVLVVDMAGGLLT---GAVAERLGGTGYVCNT 238 (355)
Q Consensus 192 R~DtLa~iLs~aNV~~g~rvLV~D~~~GLlt---aAv~eRmGg~G~Vi~~ 238 (355)
..+.|..+|.-.+|.+...|+|+|..++.-+ +++++++|-. .|..+
T Consensus 87 ~~~~~~~~l~~~Gi~~~~~VVvY~~~g~~~a~r~~~~L~~~G~~-~V~~L 135 (320)
T PLN02723 87 SEEAFAAAVSALGIENKDGVVVYDGKGIFSAARVWWMFRVFGHE-KVWVL 135 (320)
T ss_pred CHHHHHHHHHHcCCCCCCEEEEEcCCCcchHHHHHHHHHHcCCC-ceEEc
Confidence 3578899999999999999999987665443 4557777653 45533
No 151
>cd05188 MDR Medium chain reductase/dehydrogenase (MDR)/zinc-dependent alcohol dehydrogenase-like family. The medium chain reductase/dehydrogenases (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P) binding-Rossmann fold domain of a beta-alpha form and an N-terminal catalytic domain with distant homology to GroES. The MDR group contains a host of activities, including the founding alcohol dehydrogenase (ADH) , quinone reductase, sorbitol dehydrogenase, formaldehyde dehydrogenase, butanediol DH, ketose reductase, cinnamyl reductase, and numerous others. The zinc-dependent alcohol dehydro
Probab=22.27 E-value=2.1e+02 Score=25.56 Aligned_cols=52 Identities=25% Similarity=0.337 Sum_probs=33.3
Q ss_pred HHHhcCCCCCCeEEEEeCCC-cHHHHHHHHHcCCcceEEEEecCCCCChhhhHHhcC
Q 018481 199 LLSMGNVAANSDVLVVDMAG-GLLTGAVAERLGGTGYVCNTCIGDSLYPMDIVRIFN 254 (355)
Q Consensus 199 iLs~aNV~~g~rvLV~D~~~-GLltaAv~eRmGg~G~Vi~~~~g~~p~~~~~l~~~N 254 (355)
+...+.+++|.++|+.+.++ |..++.++..+| ..|+.+... +...+.++.++
T Consensus 126 l~~~~~~~~~~~vli~g~~~~G~~~~~~a~~~g--~~v~~~~~~--~~~~~~~~~~g 178 (271)
T cd05188 126 LRRAGVLKPGDTVLVLGAGGVGLLAAQLAKAAG--ARVIVTDRS--DEKLELAKELG 178 (271)
T ss_pred HHhccCCCCCCEEEEECCCHHHHHHHHHHHHcC--CeEEEEcCC--HHHHHHHHHhC
Confidence 34455669999999998764 777777887776 456555432 22344555544
No 152
>PRK13168 rumA 23S rRNA m(5)U1939 methyltransferase; Reviewed
Probab=22.04 E-value=2e+02 Score=29.58 Aligned_cols=44 Identities=16% Similarity=-0.007 Sum_probs=35.6
Q ss_pred HHHHHHhcCCCCCCeEEEEeCCCcHHHHHHHHHcCCcceEEEEecCC
Q 018481 196 LSLLLSMGNVAANSDVLVVDMAGGLLTGAVAERLGGTGYVCNTCIGD 242 (355)
Q Consensus 196 La~iLs~aNV~~g~rvLV~D~~~GLltaAv~eRmGg~G~Vi~~~~g~ 242 (355)
+..++.+.++.+|.++|.+..+.|.++.+++.+. +.|+.+....
T Consensus 286 ~~~vl~~l~~~~~~~VLDlgcGtG~~sl~la~~~---~~V~gvD~s~ 329 (443)
T PRK13168 286 VARALEWLDPQPGDRVLDLFCGLGNFTLPLARQA---AEVVGVEGVE 329 (443)
T ss_pred HHHHHHHhcCCCCCEEEEEeccCCHHHHHHHHhC---CEEEEEeCCH
Confidence 3456677788999999999999999999999874 5788777544
No 153
>cd08254 hydroxyacyl_CoA_DH 6-hydroxycyclohex-1-ene-1-carboxyl-CoA dehydrogenase, N-benzyl-3-pyrrolidinol dehydrogenase, and other MDR family members. This group contains enzymes of the zinc-dependent alcohol dehydrogenase family, including members (aka MDR) identified as 6-hydroxycyclohex-1-ene-1-carboxyl-CoA dehydrogenase and N-benzyl-3-pyrrolidinol dehydrogenase. 6-hydroxycyclohex-1-ene-1-carboxyl-CoA dehydrogenase catalyzes the conversion of 6-Hydroxycyclohex-1-enecarbonyl-CoA and NAD+ to 6-Ketoxycyclohex-1-ene-1-carboxyl-CoA,NADH, and H+. This group displays the characteristic catalytic and structural zinc sites of the zinc-dependent alcohol dehydrogenases. NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes, or ketones. Alcohol dehydrogenase in the liver converts ethanol and NAD+ to acetaldehyde and NADH, while in yeast and some other microorganisms ADH catalyzes the conversion acetaldehyde to ethanol in alcoholic fermentatio
Probab=21.74 E-value=1.8e+02 Score=27.36 Aligned_cols=53 Identities=21% Similarity=0.331 Sum_probs=33.4
Q ss_pred HHHhcCCCCCCeEEEEeCC-CcHHHHHHHHHcCCcceEEEEecCCCCChhhhHHhcCC
Q 018481 199 LLSMGNVAANSDVLVVDMA-GGLLTGAVAERLGGTGYVCNTCIGDSLYPMDIVRIFNF 255 (355)
Q Consensus 199 iLs~aNV~~g~rvLV~D~~-~GLltaAv~eRmGg~G~Vi~~~~g~~p~~~~~l~~~Nf 255 (355)
+...+++.+|.++|+...+ -|..+..+|.++|.. |+.+... +...+.++.++.
T Consensus 157 l~~~~~~~~~~~vli~g~g~vG~~~~~la~~~G~~--V~~~~~s--~~~~~~~~~~g~ 210 (338)
T cd08254 157 VVRAGEVKPGETVLVIGLGGLGLNAVQIAKAMGAA--VIAVDIK--EEKLELAKELGA 210 (338)
T ss_pred HHhccCCCCCCEEEEECCcHHHHHHHHHHHHcCCE--EEEEcCC--HHHHHHHHHhCC
Confidence 3456789999999996532 266777788888754 6655432 223445555543
No 154
>COG3088 CcmH Uncharacterized protein involved in biosynthesis of c-type cytochromes [Posttranslational modification, protein turnover, chaperones]
Probab=21.68 E-value=75 Score=28.93 Aligned_cols=52 Identities=23% Similarity=0.422 Sum_probs=38.6
Q ss_pred cccCccccccCccc-ccCCHHHHHHHHHcCCChHHHHHHHHhcccccccchhhcHHHHHHHhhhccCCcEEEeCC
Q 018481 98 EFRDNRAIVDDNKA-QCLSGEDIDEMRRQGATGEEIVEALIANSATFEKKTSFSQEKYKLKKQKKYAPKVLLRRP 171 (355)
Q Consensus 98 ~~~dNr~i~Dd~~s-QkLt~eeIe~LKk~G~sG~eII~~LienS~tF~~KT~FSQeKYlkKK~kKy~~~ftilkP 171 (355)
...-|++|.|.|.- -.=-.-++-+|-++|.|-++||..+++ +|-.+|+.-.|
T Consensus 48 p~CQNqsIadSnA~IA~DlR~~V~e~l~eGkS~~qIid~mVa----------------------RYG~FVly~Pp 100 (153)
T COG3088 48 PQCQNQSIADSNAPIARDLRHQVYELLQEGKSDQQIIDYMVA----------------------RYGEFVLYKPP 100 (153)
T ss_pred CcCCCCChhhhccHHHHHHHHHHHHHHHcCCcHHHHHHHHHH----------------------hhcceeeecCC
Confidence 34668888888752 222245677888999999999999995 78877777555
No 155
>PLN02336 phosphoethanolamine N-methyltransferase
Probab=21.63 E-value=2.5e+02 Score=28.83 Aligned_cols=44 Identities=16% Similarity=0.008 Sum_probs=35.3
Q ss_pred HHHHHHhcCCCCCCeEEEEeCCCcHHHHHHHHHcCCcceEEEEecC
Q 018481 196 LSLLLSMGNVAANSDVLVVDMAGGLLTGAVAERLGGTGYVCNTCIG 241 (355)
Q Consensus 196 La~iLs~aNV~~g~rvLV~D~~~GLltaAv~eRmGg~G~Vi~~~~g 241 (355)
.-.++...++.+|.+||.++++.|.++..++.+.|. .|+.+...
T Consensus 255 te~l~~~~~~~~~~~vLDiGcG~G~~~~~la~~~~~--~v~gvDiS 298 (475)
T PLN02336 255 TKEFVDKLDLKPGQKVLDVGCGIGGGDFYMAENFDV--HVVGIDLS 298 (475)
T ss_pred HHHHHHhcCCCCCCEEEEEeccCCHHHHHHHHhcCC--EEEEEECC
Confidence 355666777899999999999999999999988743 67777653
No 156
>PLN03154 putative allyl alcohol dehydrogenase; Provisional
Probab=21.46 E-value=2e+02 Score=28.08 Aligned_cols=51 Identities=24% Similarity=0.402 Sum_probs=34.8
Q ss_pred HhcCCCCCCeEEEEeCCC--cHHHHHHHHHcCCcceEEEEecCCCCChhhhHH-hcCC
Q 018481 201 SMGNVAANSDVLVVDMAG--GLLTGAVAERLGGTGYVCNTCIGDSLYPMDIVR-IFNF 255 (355)
Q Consensus 201 s~aNV~~g~rvLV~D~~~--GLltaAv~eRmGg~G~Vi~~~~g~~p~~~~~l~-~~Nf 255 (355)
..+++++|.+|||....+ |+++..+|..+|. +|+.+-.. +...+.++ .++.
T Consensus 152 ~~~~~~~g~~VlV~GaaG~vG~~aiqlAk~~G~--~Vi~~~~~--~~k~~~~~~~lGa 205 (348)
T PLN03154 152 EVCSPKKGDSVFVSAASGAVGQLVGQLAKLHGC--YVVGSAGS--SQKVDLLKNKLGF 205 (348)
T ss_pred HhcCCCCCCEEEEecCccHHHHHHHHHHHHcCC--EEEEEcCC--HHHHHHHHHhcCC
Confidence 458899999999998744 7778888888875 46554332 22445554 5665
No 157
>PHA03411 putative methyltransferase; Provisional
Probab=21.44 E-value=2.1e+02 Score=28.41 Aligned_cols=48 Identities=13% Similarity=0.027 Sum_probs=33.6
Q ss_pred CHhHHHHHHHhcCCCCCCeEEEEeCCCcHHHHHHHHHcCCcceEEEEecC
Q 018481 192 RVDMLSLLLSMGNVAANSDVLVVDMAGGLLTGAVAERLGGTGYVCNTCIG 241 (355)
Q Consensus 192 R~DtLa~iLs~aNV~~g~rvLV~D~~~GLltaAv~eRmGg~G~Vi~~~~g 241 (355)
-++++...+. ...+++++||-+..+.|.++.+++.|.++ ..|+.+...
T Consensus 50 TP~~i~~~f~-~~~~~~grVLDLGcGsGilsl~la~r~~~-~~V~gVDis 97 (279)
T PHA03411 50 TPEGLAWDFT-IDAHCTGKVLDLCAGIGRLSFCMLHRCKP-EKIVCVELN 97 (279)
T ss_pred CCHHHHHHHH-hccccCCeEEEcCCCCCHHHHHHHHhCCC-CEEEEEECC
Confidence 3444443332 24567789999999999999999998754 477777653
No 158
>cd08292 ETR_like_2 2-enoyl thioester reductase (ETR) like proteins, child 2. 2-enoyl thioester reductase (ETR) like proteins. ETR catalyzes the NADPH-dependent conversion of trans-2-enoyl acyl carrier protein/coenzyme A (ACP/CoA) to acyl-(ACP/CoA) in fatty acid synthesis. 2-enoyl thioester reductase activity has been linked in Candida tropicalis as essential in maintaining mitiochondrial respiratory function. This ETR family is a part of the medium chain dehydrogenase/reductase family, but lack the zinc coordination sites characteristic of the 2-enoyl thioester reductase (ETR) like proteins. ETR catalyzes the NADPH-dependent dependent conversion of trans-2-enoyl acyl carrier protein/coenzyme A (ACP/CoA) to acyl-(ACP/CoA) in fatty acid synthesis. 2-enoyl thioester reductase activity has been linked in Candida tropicalis as essential in maintaining mitiochondrial respiratory function. This ETR family is a part of the medium chain dehydrogenase/reductase family, but lack the zinc coordina
Probab=21.40 E-value=1.4e+02 Score=27.88 Aligned_cols=32 Identities=19% Similarity=0.103 Sum_probs=25.4
Q ss_pred HHhcCCCCCCeEEEEeCC--CcHHHHHHHHHcCC
Q 018481 200 LSMGNVAANSDVLVVDMA--GGLLTGAVAERLGG 231 (355)
Q Consensus 200 Ls~aNV~~g~rvLV~D~~--~GLltaAv~eRmGg 231 (355)
+..+++.+|.+|||...+ -|+.++.+|..+|-
T Consensus 132 ~~~~~~~~g~~vlI~g~~g~ig~~~~~~a~~~G~ 165 (324)
T cd08292 132 LDFLGVKPGQWLIQNAAGGAVGKLVAMLAAARGI 165 (324)
T ss_pred HHhhCCCCCCEEEEcccccHHHHHHHHHHHHCCC
Confidence 445799999999998754 47778888888875
No 159
>TIGR00740 methyltransferase, putative. A simple BLAST search finds all members of this family and weaker hits to a large number of known and predicted methyltransferases. A single iteration with PSI-BLAST, keeping only clear members of the family, leads to a large number of highly significant hits to a set of known and predicted methyltransferases with a large repertoire of different specifities. This model is restricted to a subfamily found so far only in the Proteobacteria, sharing consistent length, full-length homology, and on average better than 35 % identity. It is reasonable to predict equivalent function within this subfamily.
Probab=21.29 E-value=2.8e+02 Score=25.52 Aligned_cols=37 Identities=14% Similarity=0.083 Sum_probs=31.1
Q ss_pred CCCCCeEEEEeCCCcHHHHHHHHHcC-CcceEEEEecC
Q 018481 205 VAANSDVLVVDMAGGLLTGAVAERLG-GTGYVCNTCIG 241 (355)
Q Consensus 205 V~~g~rvLV~D~~~GLltaAv~eRmG-g~G~Vi~~~~g 241 (355)
+.++.++|.++.+.|.++..+++++. ..+.|+.+...
T Consensus 51 ~~~~~~iLDlGcG~G~~~~~l~~~~~~p~~~v~gvD~s 88 (239)
T TIGR00740 51 VTPDSNVYDLGCSRGAATLSARRNINQPNVKIIGIDNS 88 (239)
T ss_pred CCCCCEEEEecCCCCHHHHHHHHhcCCCCCeEEEEeCC
Confidence 46889999999999999999999874 46788888764
No 160
>TIGR01743 purR_Bsub pur operon repressor, Bacillus subtilis type. This model represents the puring operon repressor PurR of low-GC Gram-positive bacteria. This homodimeric repressor contains a large region homologous to phosphoribosyltransferases and is inhibited by 5-phosphoribosyl 1-pyrophosphate.
Probab=20.88 E-value=1.8e+02 Score=28.63 Aligned_cols=40 Identities=23% Similarity=0.360 Sum_probs=27.9
Q ss_pred cCCCCCCeEEEEeC---CCcHHHHH--HHHHcCC--cceEEEEecCC
Q 018481 203 GNVAANSDVLVVDM---AGGLLTGA--VAERLGG--TGYVCNTCIGD 242 (355)
Q Consensus 203 aNV~~g~rvLV~D~---~~GLltaA--v~eRmGg--~G~Vi~~~~g~ 242 (355)
..+.+|+|||++|+ +||-+.++ +++..|+ -|.++.+..++
T Consensus 189 ~~l~~G~rVLIVDDv~~TGgTi~a~i~Ll~e~Ga~VvGv~vlve~~~ 235 (268)
T TIGR01743 189 RSLKTGSKVLIIDDFMKAGGTINGMINLLDEFDAEVAGIGVLIDNEG 235 (268)
T ss_pred hhCCCcCEEEEEeeecccCHHHHHHHHHHHHCCCEEEEEEEEEECCC
Confidence 35679999999999 66766554 5677776 36666666543
No 161
>cd08242 MDR_like Medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family. This group contains members identified as related to zinc-dependent alcohol dehydrogenase and other members of the MDR family, including threonine dehydrogenase. The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P) binding-Rossmann fold domain of a beta-alpha form and an N-terminal catalytic domain with distant homology to GroES. The MDR group includes various activities, including the founding alcohol dehydrogenase (ADH), quinone reducta
Probab=20.84 E-value=2.5e+02 Score=26.44 Aligned_cols=54 Identities=19% Similarity=0.166 Sum_probs=33.5
Q ss_pred HHHhcCCCCCCeEEEEeCC-CcHHHHHHHHHcCCcceEEEEecCCCCChhhhHHhcCCC
Q 018481 199 LLSMGNVAANSDVLVVDMA-GGLLTGAVAERLGGTGYVCNTCIGDSLYPMDIVRIFNFS 256 (355)
Q Consensus 199 iLs~aNV~~g~rvLV~D~~-~GLltaAv~eRmGg~G~Vi~~~~g~~p~~~~~l~~~Nf~ 256 (355)
++..+++++|.++||...+ -|.++..++..+|-. |+.+.. .+...+.++.++.+
T Consensus 147 ~~~~~~~~~g~~vlV~g~g~vg~~~~q~a~~~G~~--vi~~~~--~~~~~~~~~~~g~~ 201 (319)
T cd08242 147 ILEQVPITPGDKVAVLGDGKLGLLIAQVLALTGPD--VVLVGR--HSEKLALARRLGVE 201 (319)
T ss_pred HHHhcCCCCCCEEEEECCCHHHHHHHHHHHHcCCe--EEEEcC--CHHHHHHHHHcCCc
Confidence 3457889999999999531 255566677777644 444432 23355666666543
No 162
>TIGR00452 methyltransferase, putative. Known examples to date are restricted to the proteobacteria.
Probab=20.73 E-value=1.8e+02 Score=28.93 Aligned_cols=41 Identities=12% Similarity=0.039 Sum_probs=31.1
Q ss_pred HHHhcCCCCCCeEEEEeCCCcHHHHHHHHHcCCcceEEEEecC
Q 018481 199 LLSMGNVAANSDVLVVDMAGGLLTGAVAERLGGTGYVCNTCIG 241 (355)
Q Consensus 199 iLs~aNV~~g~rvLV~D~~~GLltaAv~eRmGg~G~Vi~~~~g 241 (355)
++.+.+..+|.+||.++.+.|.++..++.+ |.+.|+.+.+.
T Consensus 113 ~l~~l~~~~g~~VLDvGCG~G~~~~~~~~~--g~~~v~GiDpS 153 (314)
T TIGR00452 113 VLPHLSPLKGRTILDVGCGSGYHMWRMLGH--GAKSLVGIDPT 153 (314)
T ss_pred HHHhcCCCCCCEEEEeccCCcHHHHHHHHc--CCCEEEEEcCC
Confidence 555556778999999999999998888764 34577777653
No 163
>COG4359 Uncharacterized conserved protein [Function unknown]
Probab=20.63 E-value=2.5e+02 Score=26.83 Aligned_cols=49 Identities=16% Similarity=0.127 Sum_probs=39.8
Q ss_pred HhHHHHHHHhcCCCC------------CCeEEEEeCCCcHHHHHHHHHcCCcceEEEEecC
Q 018481 193 VDMLSLLLSMGNVAA------------NSDVLVVDMAGGLLTGAVAERLGGTGYVCNTCIG 241 (355)
Q Consensus 193 ~DtLa~iLs~aNV~~------------g~rvLV~D~~~GLltaAv~eRmGg~G~Vi~~~~g 241 (355)
.+.|.-+|.-+-|.| +.+++|+-.++--...+++|+++|.-+|..++.-
T Consensus 62 ~Eile~llk~i~Idp~fKef~e~ike~di~fiVvSsGm~~fI~~lfe~ivgke~i~~idi~ 122 (220)
T COG4359 62 EEILEFLLKDIKIDPGFKEFVEWIKEHDIPFIVVSSGMDPFIYPLFEGIVGKERIYCIDIV 122 (220)
T ss_pred HHHHHHHHhhcccCccHHHHHHHHHHcCCCEEEEeCCCchHHHHHHHhhccccceeeeEEe
Confidence 455666666566665 5799999999999999999999999999988753
No 164
>cd08283 FDH_like_1 Glutathione-dependent formaldehyde dehydrogenase related proteins, child 1. Members identified as glutathione-dependent formaldehyde dehydrogenase(FDH), a member of the zinc-dependent/medium chain alcohol dehydrogenase family. FDH converts formaldehyde and NAD(P) to formate and NAD(P)H. The initial step in this process the spontaneous formation of a S-(hydroxymethyl)glutathione adduct from formaldehyde and glutathione, followed by FDH-mediated oxidation (and detoxification) of the adduct to S-formylglutathione. MDH family uses NAD(H) as a cofactor in the interconversion of alcohols and aldehydes, or ketones. Like many zinc-dependent alcohol dehydrogenases (ADH) of the medium chain alcohol dehydrogenase/reductase family (MDR), these FDHs form dimers, with 4 zinc ions per dimer. The medium chain alcohol dehydrogenase family (MDR) has a NAD(P)(H)-binding domain in a Rossmann fold of a beta-alpha form. The N-terminal region typically has an all-beta catalytic domain. T
Probab=20.49 E-value=2e+02 Score=28.48 Aligned_cols=39 Identities=23% Similarity=0.237 Sum_probs=29.3
Q ss_pred HhcCCCCCCeEEEEeCCC-cHHHHHHHHHcCCcceEEEEec
Q 018481 201 SMGNVAANSDVLVVDMAG-GLLTGAVAERLGGTGYVCNTCI 240 (355)
Q Consensus 201 s~aNV~~g~rvLV~D~~~-GLltaAv~eRmGg~G~Vi~~~~ 240 (355)
..+.+.+|.+|||+..+. |.++..+|.++|- +.|+.+..
T Consensus 178 ~~~~~~~g~~VlV~g~G~vG~~~~~la~~~g~-~~vi~~~~ 217 (386)
T cd08283 178 ELAEVKPGDTVAVWGCGPVGLFAARSAKLLGA-ERVIAIDR 217 (386)
T ss_pred hhccCCCCCEEEEECCCHHHHHHHHHHHHcCC-CEEEEEcC
Confidence 467889999999996544 7788888888864 55666644
No 165
>cd08277 liver_alcohol_DH_like Liver alcohol dehydrogenase. NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes, or ketones. Alcohol dehydrogenase in the liver converts ethanol and NAD+ to acetaldehyde and NADH, while in yeast and some other microorganisms ADH catalyzes the conversion acetaldehyde to ethanol in alcoholic fermentation. There are 7 vertebrate ADH 7 classes, 6 of which have been identified in humans. Class III, glutathione-dependent formaldehyde dehydrogenase, has been identified as the primordial form and exists in diverse species, including plants, micro-organisms, vertebrates, and invertebrates. Class I, typified by liver dehydrogenase, is an evolving form. Gene duplication and functional specialization of ADH into ADH classes and subclasses created numerous forms in vertebrates. For example, the A, B and C (formerly alpha, beta, gamma) human class I subunits have high overall structural similarity, but differ i
Probab=20.32 E-value=1.4e+02 Score=29.28 Aligned_cols=53 Identities=19% Similarity=0.154 Sum_probs=34.3
Q ss_pred HHhcCCCCCCeEEEEeCC-CcHHHHHHHHHcCCcceEEEEecCCCCChhhhHHhcCC
Q 018481 200 LSMGNVAANSDVLVVDMA-GGLLTGAVAERLGGTGYVCNTCIGDSLYPMDIVRIFNF 255 (355)
Q Consensus 200 Ls~aNV~~g~rvLV~D~~-~GLltaAv~eRmGg~G~Vi~~~~g~~p~~~~~l~~~Nf 255 (355)
...+++++|.+|||...+ -|++++.+|..+|. -.|+.+... +...+.++.++.
T Consensus 177 ~~~~~~~~g~~vlV~G~g~vG~~~~~~a~~~G~-~~Vi~~~~~--~~~~~~~~~~ga 230 (365)
T cd08277 177 WNTAKVEPGSTVAVFGLGAVGLSAIMGAKIAGA-SRIIGVDIN--EDKFEKAKEFGA 230 (365)
T ss_pred HhhcCCCCCCEEEEECCCHHHHHHHHHHHHcCC-CeEEEEeCC--HHHHHHHHHcCC
Confidence 346889999999999642 26677778887763 246655442 234555666654
No 166
>PF01272 GreA_GreB: Transcription elongation factor, GreA/GreB, C-term; InterPro: IPR001437 Bacterial proteins greA and greB are necessary for efficient RNA polymerase transcription elongation past template-encoded arresting sites. Arresting sites in DNA have the property of trapping a certain fraction of elongating RNA polymerases that pass through, resulting in locked DNA/RNA/ polymerase ternary complexes. Cleavage of the nascent transcript by cleavage factors, such as greA or greB, allows the resumption of elongation from the new 3' terminus [, ]. Escherichia coli GreA and GreB are sequence homologues and have homologues in every known bacterial genome []. GreA induces cleavage two or three nucleotides behind the terminus and can only prevent the formation of arrested complexes while greB releases longer sequences up to eighteen nucleotides in length and can rescue preexisting arrested complexes. These functional differences correlate with a distinctive structural feature, the distribution of positively charged residues on one face of the N-terminal coiled coil. Remarkably, despite close functional similarity, the prokaryotic Gre factors have no sequence or structural similarity with eukaryotic TFIIS. ; GO: 0003677 DNA binding, 0032784 regulation of transcription elongation, DNA-dependent; PDB: 2P4V_E 2ETN_B 3BMB_B 2PN0_D 1GRJ_A 2EUL_C 3AOH_Y 3AOI_X 2F23_A.
Probab=20.26 E-value=2.4e+02 Score=21.80 Aligned_cols=56 Identities=20% Similarity=0.292 Sum_probs=32.9
Q ss_pred CCcccCCCEEEEEe-cCCCeEEEEEEecCCEEEEcceeeeCC-----CccCCCCCcEEEEeCC
Q 018481 14 AQLTWEGCSVLLDI-NDGDRLVFARLTSGSTLKIGNKNCSLQ-----PLIGCPFGSLFQVDNG 70 (355)
Q Consensus 14 ~~~I~eGd~VlL~~-~~g~~~~iv~l~~~~~i~lgK~~f~l~-----~LIG~pyGstfEi~~~ 70 (355)
...|..|+.|.|+. .+++...+.-+.+. .....++.++.. .|+|+.-|.++++...
T Consensus 3 ~~~V~~Gs~V~l~~~~~~~~~~~~lv~~~-~~~~~~~~IS~~SPLG~ALlG~~~Gd~v~~~~~ 64 (77)
T PF01272_consen 3 DDVVTIGSTVTLKDLDDGEEETYTLVGPD-EADPDNGKISIDSPLGKALLGKKVGDEVEVELP 64 (77)
T ss_dssp TSB-STTEEEEEEETTTTEEEEEEEE-GG-G-BSTSTEEETTSHHHHHHTT-BTT-EEEEEET
T ss_pred CCEEEeCCEEEEEECCCCCEEEEEEEeEh-HhCCceeEEEecCHHHHHhcCCCCCCEEEEEeC
Confidence 46789999999987 44555533333332 233334455554 5899999999998744
No 167
>PLN03236 4-alpha-glucanotransferase; Provisional
Probab=20.05 E-value=7e+02 Score=28.25 Aligned_cols=110 Identities=15% Similarity=0.199 Sum_probs=66.2
Q ss_pred CChHHHHHHHHhcc-----------cccccchhhcHHHHHHH------h-------------------------------
Q 018481 127 ATGEEIVEALIANS-----------ATFEKKTSFSQEKYKLK------K------------------------------- 158 (355)
Q Consensus 127 ~sG~eII~~LienS-----------~tF~~KT~FSQeKYlkK------K------------------------------- 158 (355)
-...+|+.+-+... .+|.-|.+|..|+=|.. |
T Consensus 428 ~~~~~v~~~~l~~~~~~~~~~~~~~~~y~~k~e~~te~~i~~~~~~~~~~~~~~~~~~~~~~~~~gL~~l~~nv~~i~d~ 507 (745)
T PLN03236 428 DNDGEAAGRFFEETDAETKPDGTTRGLWKFRKEFDTEQAIFASEALKPRDDFPDHLNDEQEELRAGLMQLFQNRCLLRDP 507 (745)
T ss_pred ccHHHHHHHHHHhhccccccccccCCeeeechhhhhHHHHHhhhccccccccchhhhhhHHHHHHHHHHHhcCeeeeecC
Confidence 34567777755443 47888999987776653 1
Q ss_pred --hhccCCcEEEeCCChHHH-------------HHHHHhcCcccccccCHhHHHHHHHhcCCCCCCeEEEEeCCCcHHHH
Q 018481 159 --QKKYAPKVLLRRPFARSI-------------CEAYFKKNPARIGFLRVDMLSLLLSMGNVAANSDVLVVDMAGGLLTG 223 (355)
Q Consensus 159 --~kKy~~~ftilkPt~~~i-------------~e~y~~KdP~KI~~LR~DtLa~iLs~aNV~~g~rvLV~D~~~GLlta 223 (355)
.-||-+|+.+.+.+...- -+|||.++.+==..-=...|..|++-. +.||++.--|.|..
T Consensus 508 ~~~~~f~Pr~~~~~t~s~~~L~~~~k~~~~~L~~dy~~~r~~~~W~~~a~k~L~~l~~~t------~mlvcgEDLG~vP~ 581 (745)
T PLN03236 508 DDADAFYPRFEFEETTSFQALDDWARDALRDLSDDYFFARQDATWRENARKTLPALLKCT------EMLVCGEDLGFTPM 581 (745)
T ss_pred CCCcCccccccccccchhhhcCHHHHHHHHHHHHHHHhhccHHHHHHHHHHHHHHHhcCC------CeEEehhhcCCCch
Confidence 126777777776655522 256665554211111133455665443 48889888888854
Q ss_pred ---HHHHHcCCcceEEEEecCC
Q 018481 224 ---AVAERLGGTGYVCNTCIGD 242 (355)
Q Consensus 224 ---Av~eRmGg~G~Vi~~~~g~ 242 (355)
.||+.||=-|.-|+-.+.+
T Consensus 582 ~V~~vm~eL~Il~LrIqRmpk~ 603 (745)
T PLN03236 582 CVPPVLDELGILGLRIQRMPHD 603 (745)
T ss_pred hHHHHHHHcCCCceEEeecCCC
Confidence 4677777666666665544
Done!