Query 018482
Match_columns 355
No_of_seqs 127 out of 1519
Neff 8.5
Searched_HMMs 46136
Date Fri Mar 29 09:23:36 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/018482.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/018482hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 COG0667 Tas Predicted oxidored 100.0 1.2E-66 2.7E-71 488.9 33.3 306 9-319 1-310 (316)
2 KOG1575 Voltage-gated shaker-l 100.0 5.1E-64 1.1E-68 462.6 31.6 315 8-328 11-335 (336)
3 PRK09912 L-glyceraldehyde 3-ph 100.0 3.5E-60 7.5E-65 452.6 33.0 313 4-321 8-336 (346)
4 TIGR01293 Kv_beta voltage-depe 100.0 7.3E-60 1.6E-64 445.7 32.4 299 11-316 1-316 (317)
5 PRK10625 tas putative aldo-ket 100.0 3E-59 6.6E-64 446.6 33.1 306 9-318 1-339 (346)
6 COG0656 ARA1 Aldo/keto reducta 100.0 1.8E-59 3.8E-64 425.0 26.4 258 9-321 3-267 (280)
7 PLN02587 L-galactose dehydroge 100.0 2.6E-57 5.6E-62 427.9 31.2 286 11-318 1-300 (314)
8 cd06660 Aldo_ket_red Aldo-keto 100.0 4.2E-56 9.1E-61 414.2 31.6 280 11-315 1-284 (285)
9 PRK10376 putative oxidoreducta 100.0 9.5E-55 2.1E-59 405.8 30.8 270 17-319 13-289 (290)
10 PF00248 Aldo_ket_red: Aldo/ke 100.0 3.1E-55 6.8E-60 408.0 26.1 277 23-317 1-282 (283)
11 KOG1577 Aldo/keto reductase fa 100.0 2.7E-55 5.8E-60 397.6 23.7 260 11-322 6-289 (300)
12 PRK11172 dkgB 2,5-diketo-D-glu 100.0 3.7E-53 8E-58 390.6 28.1 246 19-319 1-253 (267)
13 PRK14863 bifunctional regulato 100.0 9.7E-53 2.1E-57 391.9 24.6 270 18-317 2-281 (292)
14 PRK11565 dkgA 2,5-diketo-D-glu 100.0 1.9E-51 4.1E-56 380.6 26.7 256 10-321 5-265 (275)
15 COG4989 Predicted oxidoreducta 100.0 3.3E-51 7.1E-56 355.9 22.6 284 9-319 1-294 (298)
16 KOG1576 Predicted oxidoreducta 100.0 1.1E-50 2.4E-55 355.0 22.1 312 3-339 16-335 (342)
17 COG1453 Predicted oxidoreducta 100.0 8E-49 1.7E-53 358.9 24.8 273 9-319 1-286 (391)
18 KOG3023 Glutamate-cysteine lig 97.8 5.4E-05 1.2E-09 66.7 5.9 71 142-213 155-227 (285)
19 cd03319 L-Ala-DL-Glu_epimerase 93.4 3.6 7.9E-05 38.7 15.1 155 40-218 134-291 (316)
20 cd03315 MLE_like Muconate lact 85.8 28 0.0006 31.8 15.0 157 40-218 85-243 (265)
21 cd03316 MR_like Mandelate race 84.1 40 0.00086 32.2 14.9 155 40-214 139-299 (357)
22 PRK07945 hypothetical protein; 83.8 25 0.00053 33.6 12.7 153 42-209 111-287 (335)
23 PRK08609 hypothetical protein; 83.3 21 0.00045 36.8 12.7 150 44-210 351-522 (570)
24 PRK07535 methyltetrahydrofolat 82.3 32 0.00069 31.6 12.4 134 107-270 22-157 (261)
25 cd03323 D-glucarate_dehydratas 81.2 57 0.0012 31.9 14.5 151 40-216 168-322 (395)
26 cd04740 DHOD_1B_like Dihydroor 79.8 51 0.0011 30.6 13.2 152 40-208 100-287 (296)
27 PF07021 MetW: Methionine bios 78.5 8.5 0.00018 33.6 6.8 150 46-219 5-172 (193)
28 PRK08392 hypothetical protein; 78.2 24 0.00053 31.1 10.0 151 43-210 15-178 (215)
29 TIGR02370 pyl_corrinoid methyl 77.2 28 0.0006 30.4 9.9 145 40-207 10-164 (197)
30 cd00739 DHPS DHPS subgroup of 77.1 41 0.00088 30.8 11.3 101 107-213 21-127 (257)
31 PRK00164 moaA molybdenum cofac 76.8 68 0.0015 30.2 13.4 152 39-211 49-228 (331)
32 PRK13958 N-(5'-phosphoribosyl) 75.5 8.1 0.00018 34.1 6.1 67 119-187 16-83 (207)
33 cd00308 enolase_like Enolase-s 75.4 23 0.00051 31.5 9.2 87 128-218 120-208 (229)
34 COG1140 NarY Nitrate reductase 74.4 1.5 3.3E-05 41.7 1.2 56 153-208 261-317 (513)
35 cd03174 DRE_TIM_metallolyase D 74.3 16 0.00035 33.0 8.1 105 107-213 16-135 (265)
36 COG1748 LYS9 Saccharopine dehy 72.8 17 0.00038 35.3 8.0 81 42-139 79-159 (389)
37 cd00423 Pterin_binding Pterin 72.7 75 0.0016 28.9 12.0 102 107-214 21-128 (258)
38 COG4130 Predicted sugar epimer 72.0 25 0.00054 31.2 7.9 81 166-265 49-136 (272)
39 PRK10558 alpha-dehydro-beta-de 72.0 36 0.00078 31.1 9.6 68 148-216 9-79 (256)
40 PRK13796 GTPase YqeH; Provisio 71.8 57 0.0012 31.5 11.4 133 23-169 35-174 (365)
41 PRK10550 tRNA-dihydrouridine s 69.9 1E+02 0.0022 29.1 13.4 133 40-186 73-224 (312)
42 PRK00208 thiG thiazole synthas 68.9 92 0.002 28.3 14.4 105 106-212 72-181 (250)
43 PF00682 HMGL-like: HMGL-like 68.7 57 0.0012 29.0 10.2 150 39-205 11-178 (237)
44 PRK01222 N-(5'-phosphoribosyl) 68.6 13 0.00028 32.9 5.7 68 119-188 18-86 (210)
45 cd04731 HisF The cyclase subun 67.1 64 0.0014 28.9 10.2 145 40-205 82-243 (243)
46 cd03322 rpsA The starvation se 66.9 26 0.00057 33.7 8.0 71 145-215 202-274 (361)
47 cd02930 DCR_FMN 2,4-dienoyl-Co 66.6 1.2E+02 0.0027 28.9 13.8 140 39-185 127-305 (353)
48 COG1801 Uncharacterized conser 66.5 1E+02 0.0022 28.3 11.4 109 23-140 4-116 (263)
49 PF03102 NeuB: NeuB family; I 66.3 36 0.00079 30.8 8.3 109 39-169 53-183 (241)
50 TIGR00190 thiC thiamine biosyn 66.0 1.4E+02 0.003 29.2 16.1 144 40-211 75-221 (423)
51 PF05690 ThiG: Thiazole biosyn 64.0 64 0.0014 29.1 9.0 114 22-157 9-124 (247)
52 cd04735 OYE_like_4_FMN Old yel 63.5 1.4E+02 0.003 28.6 12.2 136 38-185 133-312 (353)
53 PRK10128 2-keto-3-deoxy-L-rham 63.5 78 0.0017 29.2 10.0 105 148-304 8-115 (267)
54 cd00740 MeTr MeTr subgroup of 63.4 1.2E+02 0.0026 27.6 12.8 103 106-215 22-128 (252)
55 PRK04452 acetyl-CoA decarbonyl 63.2 1.4E+02 0.003 28.3 12.1 116 118-271 83-207 (319)
56 TIGR01502 B_methylAsp_ase meth 63.0 1.2E+02 0.0026 29.8 11.8 86 129-215 265-357 (408)
57 TIGR03822 AblA_like_2 lysine-2 62.7 1.4E+02 0.003 28.2 12.9 109 108-219 120-240 (321)
58 PRK09613 thiH thiamine biosynt 62.3 1.3E+02 0.0029 30.1 12.1 104 105-210 113-236 (469)
59 PRK13352 thiamine biosynthesis 62.3 1.6E+02 0.0035 28.8 15.2 144 40-211 75-224 (431)
60 cd02069 methionine_synthase_B1 61.9 1.1E+02 0.0025 26.9 10.5 145 40-207 13-168 (213)
61 cd02070 corrinoid_protein_B12- 61.3 1.1E+02 0.0024 26.6 10.3 145 40-207 9-162 (201)
62 PRK15072 bifunctional D-altron 60.5 57 0.0012 31.9 9.1 84 128-215 232-317 (404)
63 cd03318 MLE Muconate Lactonizi 60.1 37 0.0008 32.6 7.6 72 145-216 227-300 (365)
64 PRK00730 rnpA ribonuclease P; 59.8 47 0.001 27.4 7.0 63 83-155 46-110 (138)
65 TIGR03239 GarL 2-dehydro-3-deo 59.8 79 0.0017 28.7 9.3 67 149-216 3-72 (249)
66 TIGR00735 hisF imidazoleglycer 59.6 1E+02 0.0022 28.0 10.0 90 117-209 161-253 (254)
67 cd03314 MAL Methylaspartate am 59.3 1.3E+02 0.0028 29.1 11.1 85 130-214 229-320 (369)
68 COG0135 TrpF Phosphoribosylant 59.1 50 0.0011 29.2 7.5 84 119-211 17-103 (208)
69 cd07943 DRE_TIM_HOA 4-hydroxy- 59.1 1.4E+02 0.0031 27.1 15.4 148 36-205 16-182 (263)
70 cd02933 OYE_like_FMN Old yello 58.7 1.7E+02 0.0037 27.9 14.1 68 116-185 246-313 (338)
71 TIGR02534 mucon_cyclo muconate 58.1 44 0.00096 32.1 7.8 73 146-218 227-301 (368)
72 KOG2733 Uncharacterized membra 56.6 6.7 0.00015 37.5 1.7 50 45-97 99-148 (423)
73 PRK07259 dihydroorotate dehydr 56.0 1.7E+02 0.0037 27.1 11.6 155 40-208 102-290 (301)
74 TIGR01928 menC_lowGC/arch o-su 55.9 1.8E+02 0.0039 27.4 15.8 154 40-219 132-287 (324)
75 cd03325 D-galactonate_dehydrat 55.7 69 0.0015 30.6 8.7 82 128-213 202-285 (352)
76 PRK06361 hypothetical protein; 55.5 1.4E+02 0.0031 26.0 17.5 186 42-275 10-201 (212)
77 cd03327 MR_like_2 Mandelate ra 54.0 71 0.0015 30.4 8.4 81 128-212 197-279 (341)
78 COG2355 Zn-dependent dipeptida 53.5 87 0.0019 29.6 8.5 106 43-165 150-260 (313)
79 PRK02083 imidazole glycerol ph 53.1 1.7E+02 0.0038 26.3 10.6 87 120-209 162-251 (253)
80 PF13378 MR_MLE_C: Enolase C-t 52.9 21 0.00045 27.7 3.9 54 164-218 3-57 (111)
81 cd04734 OYE_like_3_FMN Old yel 52.4 2.2E+02 0.0047 27.2 14.2 139 38-185 130-314 (343)
82 PRK05588 histidinol-phosphatas 52.1 1.8E+02 0.0039 26.2 13.6 105 42-162 16-143 (255)
83 PRK14017 galactonate dehydrata 51.8 1.1E+02 0.0024 29.6 9.4 84 128-215 203-288 (382)
84 PF05913 DUF871: Bacterial pro 51.6 22 0.00049 34.2 4.5 211 40-300 12-235 (357)
85 TIGR02311 HpaI 2,4-dihydroxyhe 51.5 1.9E+02 0.0041 26.2 11.1 66 149-215 3-71 (249)
86 cd02932 OYE_YqiM_FMN Old yello 51.2 2.2E+02 0.0048 26.9 13.6 94 84-185 219-319 (336)
87 PRK13523 NADPH dehydrogenase N 50.6 2.3E+02 0.005 27.0 11.4 137 39-185 132-304 (337)
88 COG1168 MalY Bifunctional PLP- 50.3 2.5E+02 0.0054 27.3 12.6 27 196-222 181-207 (388)
89 PRK05692 hydroxymethylglutaryl 49.7 45 0.00097 31.1 6.1 102 107-211 23-138 (287)
90 PRK09856 fructoselysine 3-epim 49.7 1.1E+02 0.0023 27.8 8.7 51 196-265 93-143 (275)
91 PF11020 DUF2610: Domain of un 49.3 40 0.00086 24.8 4.3 29 247-275 48-76 (82)
92 TIGR02026 BchE magnesium-proto 48.9 2E+02 0.0044 29.0 11.1 67 139-207 319-392 (497)
93 PLN02363 phosphoribosylanthran 47.3 57 0.0012 29.8 6.3 66 121-187 64-130 (256)
94 PRK08255 salicylyl-CoA 5-hydro 46.1 4E+02 0.0087 28.5 13.8 157 39-208 541-737 (765)
95 COG3172 NadR Predicted ATPase/ 46.0 1.2E+02 0.0027 25.9 7.4 103 48-156 71-185 (187)
96 cd07943 DRE_TIM_HOA 4-hydroxy- 46.0 1.3E+02 0.0029 27.3 8.6 104 107-212 19-131 (263)
97 TIGR00737 nifR3_yhdG putative 45.9 2.6E+02 0.0056 26.2 12.3 137 40-190 73-226 (319)
98 PRK13361 molybdenum cofactor b 45.4 2.7E+02 0.0058 26.3 13.2 97 39-157 45-154 (329)
99 cd07944 DRE_TIM_HOA_like 4-hyd 45.3 1.5E+02 0.0033 27.1 8.9 104 106-212 16-128 (266)
100 cd02803 OYE_like_FMN_family Ol 44.8 2.7E+02 0.0058 26.1 13.9 137 39-185 131-310 (327)
101 COG1121 ZnuC ABC-type Mn/Zn tr 44.5 1E+02 0.0023 28.1 7.4 67 107-176 112-207 (254)
102 COG2873 MET17 O-acetylhomoseri 43.9 1.7E+02 0.0038 28.4 8.9 61 44-126 66-128 (426)
103 cd03321 mandelate_racemase Man 43.8 2.9E+02 0.0064 26.3 13.5 151 40-211 141-293 (355)
104 PRK00077 eno enolase; Provisio 43.4 2.7E+02 0.0059 27.5 10.8 96 107-211 261-361 (425)
105 cd07937 DRE_TIM_PC_TC_5S Pyruv 43.0 2.7E+02 0.0058 25.6 15.4 158 36-205 15-190 (275)
106 PLN00191 enolase 42.9 1.8E+02 0.004 29.0 9.5 98 107-213 295-395 (457)
107 TIGR00126 deoC deoxyribose-pho 42.8 1.6E+02 0.0034 26.1 8.2 73 40-127 130-205 (211)
108 PRK09427 bifunctional indole-3 42.0 63 0.0014 32.3 6.1 65 120-188 273-338 (454)
109 COG2949 SanA Uncharacterized m 41.6 2.2E+02 0.0048 25.3 8.5 99 111-215 77-182 (235)
110 PRK14461 ribosomal RNA large s 41.6 1.6E+02 0.0034 28.6 8.5 90 129-219 230-354 (371)
111 PRK00507 deoxyribose-phosphate 40.9 1.4E+02 0.003 26.7 7.6 77 39-127 133-209 (221)
112 PRK10605 N-ethylmaleimide redu 40.7 3.4E+02 0.0074 26.1 14.5 140 38-185 148-320 (362)
113 TIGR03597 GTPase_YqeH ribosome 40.3 3E+02 0.0066 26.4 10.4 140 23-176 29-176 (360)
114 PF04476 DUF556: Protein of un 40.2 2.8E+02 0.0061 25.0 11.2 154 40-209 9-183 (235)
115 cd04728 ThiG Thiazole synthase 40.2 2.9E+02 0.0063 25.1 15.8 105 106-212 72-181 (248)
116 cd02801 DUS_like_FMN Dihydrour 40.2 2.6E+02 0.0055 24.5 9.8 135 40-187 65-214 (231)
117 TIGR02668 moaA_archaeal probab 40.0 3E+02 0.0066 25.3 10.6 99 38-157 39-148 (302)
118 cd03320 OSBS o-Succinylbenzoat 38.9 1.3E+02 0.0029 27.3 7.4 86 128-218 153-239 (263)
119 PRK02901 O-succinylbenzoate sy 38.9 2.3E+02 0.0049 26.9 9.1 82 129-218 162-244 (327)
120 PRK05406 LamB/YcsF family prot 38.7 1.2E+02 0.0026 27.5 6.8 82 25-124 13-96 (246)
121 PRK06424 transcription factor; 38.4 97 0.0021 25.7 5.7 111 195-306 22-141 (144)
122 TIGR03247 glucar-dehydr glucar 38.2 1.8E+02 0.0039 28.9 8.6 86 130-215 252-338 (441)
123 cd01974 Nitrogenase_MoFe_beta 38.2 4E+02 0.0087 26.2 11.9 108 63-184 65-192 (435)
124 TIGR01278 DPOR_BchB light-inde 38.2 4.4E+02 0.0096 26.7 14.3 101 71-185 69-194 (511)
125 PF00682 HMGL-like: HMGL-like 38.0 1.5E+02 0.0034 26.2 7.6 97 107-209 11-124 (237)
126 PRK13803 bifunctional phosphor 37.8 89 0.0019 32.5 6.6 68 121-188 20-88 (610)
127 PRK01045 ispH 4-hydroxy-3-meth 37.7 1.7E+02 0.0038 27.4 7.9 108 156-298 156-275 (298)
128 PF14871 GHL6: Hypothetical gl 37.4 55 0.0012 26.6 4.1 25 192-216 43-67 (132)
129 PLN02746 hydroxymethylglutaryl 37.2 1E+02 0.0022 29.6 6.5 99 107-211 65-180 (347)
130 TIGR01927 menC_gamma/gm+ o-suc 37.2 2.4E+02 0.0051 26.4 9.0 86 128-219 183-270 (307)
131 TIGR00216 ispH_lytB (E)-4-hydr 36.9 2E+02 0.0043 26.7 8.1 117 147-298 145-273 (280)
132 PRK12569 hypothetical protein; 36.2 1.5E+02 0.0032 27.0 6.9 84 25-124 14-99 (245)
133 TIGR01060 eno phosphopyruvate 36.2 3.3E+02 0.0073 26.8 10.2 96 107-211 262-362 (425)
134 TIGR03821 AblA_like_1 lysine-2 35.6 3.9E+02 0.0083 25.3 12.5 75 145-219 161-246 (321)
135 smart00642 Aamy Alpha-amylase 35.1 65 0.0014 27.2 4.4 22 196-217 73-94 (166)
136 PRK12928 lipoyl synthase; Prov 35.1 3.4E+02 0.0073 25.3 9.5 161 39-215 87-280 (290)
137 cd04747 OYE_like_5_FMN Old yel 35.0 4.2E+02 0.0091 25.5 14.0 142 38-185 133-327 (361)
138 PF01964 ThiC: ThiC family; I 34.8 1.6E+02 0.0035 28.8 7.3 149 40-215 74-224 (420)
139 PTZ00081 enolase; Provisional 34.0 3.9E+02 0.0084 26.6 10.1 97 107-212 281-382 (439)
140 PRK06294 coproporphyrinogen II 33.9 2.7E+02 0.0057 26.9 8.9 60 107-168 167-243 (370)
141 PHA02128 hypothetical protein 33.7 1E+02 0.0022 24.1 4.7 69 144-212 61-150 (151)
142 PF11242 DUF2774: Protein of u 33.6 55 0.0012 22.8 2.9 22 256-277 16-37 (63)
143 TIGR01496 DHPS dihydropteroate 33.4 3.7E+02 0.0081 24.4 13.0 99 107-213 20-125 (257)
144 PRK12360 4-hydroxy-3-methylbut 33.2 2.7E+02 0.0059 25.8 8.4 108 156-298 157-274 (281)
145 PRK15440 L-rhamnonate dehydrat 33.2 1.5E+02 0.0033 28.9 7.1 68 145-212 247-318 (394)
146 cd03313 enolase Enolase: Enola 32.9 4.4E+02 0.0095 25.8 10.4 96 107-211 261-361 (408)
147 PRK14457 ribosomal RNA large s 32.8 4.3E+02 0.0094 25.3 10.0 108 111-218 195-331 (345)
148 PRK05283 deoxyribose-phosphate 31.7 3.4E+02 0.0073 24.9 8.6 81 40-129 144-227 (257)
149 PRK08776 cystathionine gamma-s 31.4 4.4E+02 0.0096 25.7 10.1 86 129-218 100-187 (405)
150 cd01973 Nitrogenase_VFe_beta_l 31.4 5.4E+02 0.012 25.6 13.6 109 63-185 66-194 (454)
151 PF02401 LYTB: LytB protein; 31.3 1.6E+02 0.0035 27.4 6.6 115 148-298 145-274 (281)
152 KOG0059 Lipid exporter ABCA1 a 31.1 2.4E+02 0.0052 30.8 8.9 71 107-179 670-769 (885)
153 COG4555 NatA ABC-type Na+ tran 31.0 2E+02 0.0044 25.7 6.7 71 105-177 103-202 (245)
154 PRK07379 coproporphyrinogen II 30.5 2.9E+02 0.0062 27.0 8.6 60 107-168 179-255 (400)
155 TIGR02026 BchE magnesium-proto 30.3 5E+02 0.011 26.1 10.6 105 107-215 222-345 (497)
156 cd03328 MR_like_3 Mandelate ra 29.9 4.9E+02 0.011 24.8 14.9 149 40-212 138-292 (352)
157 COG2874 FlaH Predicted ATPases 29.8 2.9E+02 0.0062 24.8 7.5 114 42-165 43-167 (235)
158 COG4464 CapC Capsular polysacc 29.3 2.2E+02 0.0049 25.4 6.7 28 40-67 18-45 (254)
159 PF00809 Pterin_bind: Pterin b 29.1 3.4E+02 0.0075 23.7 8.2 89 121-215 29-125 (210)
160 PRK12331 oxaloacetate decarbox 29.1 5.9E+02 0.013 25.4 10.8 116 88-211 4-141 (448)
161 cd00408 DHDPS-like Dihydrodipi 28.9 4.5E+02 0.0097 23.9 14.0 133 39-189 15-160 (281)
162 PRK04390 rnpA ribonuclease P; 28.5 3E+02 0.0065 21.8 7.2 49 107-155 59-110 (120)
163 cd03317 NAAAR N-acylamino acid 28.5 5.1E+02 0.011 24.5 15.6 148 42-216 139-289 (354)
164 PRK10415 tRNA-dihydrouridine s 28.5 5.1E+02 0.011 24.4 12.1 136 40-187 75-225 (321)
165 PRK09061 D-glutamate deacylase 28.4 5.1E+02 0.011 26.2 10.3 106 43-157 170-276 (509)
166 COG0218 Predicted GTPase [Gene 28.4 4.1E+02 0.0089 23.3 8.5 99 43-155 92-198 (200)
167 PF07287 DUF1446: Protein of u 28.2 1.9E+02 0.004 28.0 6.6 40 196-266 61-100 (362)
168 COG2185 Sbm Methylmalonyl-CoA 28.2 3.5E+02 0.0075 22.4 9.1 58 158-219 17-76 (143)
169 PF14502 HTH_41: Helix-turn-he 28.1 51 0.0011 21.8 1.9 29 253-281 6-36 (48)
170 PRK14457 ribosomal RNA large s 28.0 5.4E+02 0.012 24.6 14.5 136 83-219 99-266 (345)
171 PRK14459 ribosomal RNA large s 28.0 3.6E+02 0.0078 26.2 8.6 93 126-218 237-360 (373)
172 COG2102 Predicted ATPases of P 27.8 1.7E+02 0.0037 26.1 5.8 119 116-268 51-177 (223)
173 KOG0023 Alcohol dehydrogenase, 27.8 2.1E+02 0.0045 27.3 6.6 148 7-209 172-324 (360)
174 TIGR02082 metH 5-methyltetrahy 27.7 9.5E+02 0.021 27.3 14.2 106 108-218 366-476 (1178)
175 PRK08195 4-hyroxy-2-oxovalerat 27.7 5.2E+02 0.011 24.6 9.6 105 106-212 21-134 (337)
176 KOG0173 20S proteasome, regula 27.7 53 0.0011 29.7 2.6 37 20-56 158-200 (271)
177 PRK09856 fructoselysine 3-epim 27.4 3.1E+02 0.0066 24.7 7.9 52 167-218 14-72 (275)
178 cd07939 DRE_TIM_NifV Streptomy 27.0 4.7E+02 0.01 23.6 9.7 97 107-211 17-128 (259)
179 PF01408 GFO_IDH_MocA: Oxidore 27.0 2.9E+02 0.0062 21.1 8.7 42 173-217 56-97 (120)
180 COG2089 SpsE Sialic acid synth 26.9 5.6E+02 0.012 24.4 11.3 114 39-174 87-222 (347)
181 cd01965 Nitrogenase_MoFe_beta_ 26.8 6.1E+02 0.013 24.8 12.8 104 72-185 66-188 (428)
182 COG0626 MetC Cystathionine bet 26.6 2.4E+02 0.0051 27.7 7.1 80 142-221 112-194 (396)
183 PRK07328 histidinol-phosphatas 26.4 4.9E+02 0.011 23.6 15.3 107 43-163 19-160 (269)
184 COG0502 BioB Biotin synthase a 26.2 4.5E+02 0.0097 25.1 8.7 133 39-192 84-233 (335)
185 cd03329 MR_like_4 Mandelate ra 26.1 5.8E+02 0.013 24.4 15.2 151 40-212 143-298 (368)
186 COG0761 lytB 4-Hydroxy-3-methy 26.0 2.2E+02 0.0048 26.5 6.4 120 144-298 144-277 (294)
187 PRK14465 ribosomal RNA large s 26.0 3.9E+02 0.0084 25.6 8.3 90 130-219 215-331 (342)
188 PF07994 NAD_binding_5: Myo-in 26.0 4.9E+02 0.011 24.4 8.8 145 109-294 131-283 (295)
189 COG0159 TrpA Tryptophan syntha 25.9 5.3E+02 0.011 23.8 13.4 29 180-208 96-124 (265)
190 TIGR00048 radical SAM enzyme, 25.7 3E+02 0.0065 26.5 7.6 90 130-219 218-335 (355)
191 PRK06740 histidinol-phosphatas 25.6 2.6E+02 0.0056 26.6 7.1 24 41-64 60-83 (331)
192 cd03324 rTSbeta_L-fuconate_deh 25.6 6.5E+02 0.014 24.7 15.4 151 40-212 196-351 (415)
193 cd07944 DRE_TIM_HOA_like 4-hyd 25.6 5.2E+02 0.011 23.6 15.7 27 36-62 14-40 (266)
194 PRK01313 rnpA ribonuclease P; 25.5 3.4E+02 0.0073 22.0 6.8 62 83-154 47-113 (129)
195 PF02679 ComA: (2R)-phospho-3- 25.5 1.9E+02 0.0041 26.3 5.8 98 113-211 24-131 (244)
196 smart00052 EAL Putative diguan 25.5 3.8E+02 0.0082 23.2 7.9 99 111-213 100-210 (241)
197 COG0145 HyuA N-methylhydantoin 25.4 6.8E+02 0.015 26.5 10.6 102 39-143 136-248 (674)
198 PLN02389 biotin synthase 25.2 6.4E+02 0.014 24.5 10.1 102 39-157 116-227 (379)
199 PF00697 PRAI: N-(5'phosphorib 25.1 81 0.0018 27.4 3.4 68 118-189 13-81 (197)
200 cd08583 PI-PLCc_GDPD_SF_unchar 25.1 4.8E+02 0.01 23.0 9.1 22 40-61 13-34 (237)
201 KOG2599 Pyridoxal/pyridoxine/p 25.0 3.9E+02 0.0085 24.8 7.6 126 35-171 58-194 (308)
202 TIGR02080 O_succ_thio_ly O-suc 24.7 6.3E+02 0.014 24.3 10.5 86 129-218 91-178 (382)
203 PF07476 MAAL_C: Methylasparta 24.7 2.2E+02 0.0047 25.6 5.8 101 106-211 85-194 (248)
204 PLN02321 2-isopropylmalate syn 24.6 5.2E+02 0.011 27.1 9.5 106 107-217 105-234 (632)
205 PF01118 Semialdhyde_dh: Semia 24.6 1E+02 0.0022 24.3 3.6 28 40-67 75-102 (121)
206 TIGR02090 LEU1_arch isopropylm 24.4 6.4E+02 0.014 24.2 10.2 26 38-63 18-43 (363)
207 TIGR03217 4OH_2_O_val_ald 4-hy 24.2 6.2E+02 0.013 24.0 9.9 109 103-212 17-133 (333)
208 COG0673 MviM Predicted dehydro 24.1 1.3E+02 0.0028 28.1 4.8 67 254-320 41-117 (342)
209 PRK09490 metH B12-dependent me 24.0 1.1E+03 0.024 26.9 14.0 171 40-218 290-492 (1229)
210 PRK03031 rnpA ribonuclease P; 23.9 3.7E+02 0.008 21.3 6.7 51 107-157 62-117 (122)
211 PRK12558 glutamyl-tRNA synthet 23.7 2.2E+02 0.0047 28.4 6.4 59 107-173 48-106 (445)
212 PRK05414 urocanate hydratase; 23.7 2.3E+02 0.005 28.6 6.4 115 49-177 119-254 (556)
213 TIGR01228 hutU urocanate hydra 23.6 2.3E+02 0.005 28.5 6.3 141 16-177 84-245 (545)
214 KOG1196 Predicted NAD-dependen 23.6 1.5E+02 0.0033 27.9 4.9 99 43-161 211-310 (343)
215 PRK05628 coproporphyrinogen II 23.5 5.5E+02 0.012 24.6 9.2 27 107-134 172-198 (375)
216 PRK08195 4-hyroxy-2-oxovalerat 23.5 6.4E+02 0.014 24.0 16.7 26 37-62 20-45 (337)
217 PLN02681 proline dehydrogenase 23.5 7.5E+02 0.016 24.7 12.2 161 43-216 221-412 (455)
218 PRK03459 rnpA ribonuclease P; 23.3 3.9E+02 0.0084 21.3 6.9 63 83-155 48-114 (122)
219 PF01402 RHH_1: Ribbon-helix-h 23.2 1.8E+02 0.0039 17.5 3.9 23 251-273 9-31 (39)
220 TIGR00035 asp_race aspartate r 23.1 3.6E+02 0.0077 23.9 7.3 63 107-170 14-88 (229)
221 PF01053 Cys_Met_Meta_PP: Cys/ 23.0 2.2E+02 0.0048 27.7 6.3 80 142-221 104-186 (386)
222 PF00072 Response_reg: Respons 22.9 2.6E+02 0.0056 20.6 5.6 60 126-187 42-102 (112)
223 PRK08247 cystathionine gamma-s 22.8 3.5E+02 0.0076 25.8 7.6 61 159-219 117-179 (366)
224 PRK14466 ribosomal RNA large s 22.5 6E+02 0.013 24.4 8.9 91 129-219 209-327 (345)
225 TIGR00262 trpA tryptophan synt 22.5 5.9E+02 0.013 23.1 9.5 87 127-215 37-150 (256)
226 PF01904 DUF72: Protein of unk 22.4 5.5E+02 0.012 22.8 10.7 128 56-211 19-147 (230)
227 COG1104 NifS Cysteine sulfinat 22.2 2.6E+02 0.0057 27.3 6.4 67 144-210 103-175 (386)
228 cd02810 DHOD_DHPD_FMN Dihydroo 22.2 6E+02 0.013 23.1 12.2 131 40-185 109-271 (289)
229 PRK14462 ribosomal RNA large s 22.1 5E+02 0.011 25.0 8.4 88 132-219 225-340 (356)
230 cd08556 GDPD Glycerophosphodie 22.1 4.5E+02 0.0097 21.8 7.5 151 40-214 11-168 (189)
231 cd07948 DRE_TIM_HCS Saccharomy 21.8 6.1E+02 0.013 23.1 11.1 25 39-63 19-43 (262)
232 TIGR03849 arch_ComA phosphosul 21.8 2.5E+02 0.0055 25.3 5.9 97 114-211 12-118 (237)
233 COG2896 MoaA Molybdenum cofact 21.6 3.7E+02 0.008 25.6 7.1 98 39-157 43-151 (322)
234 CHL00076 chlB photochlorophyll 21.5 8.6E+02 0.019 24.6 15.8 89 128-216 117-248 (513)
235 TIGR01290 nifB nitrogenase cof 21.4 8.1E+02 0.017 24.3 12.0 108 106-218 59-199 (442)
236 TIGR02666 moaA molybdenum cofa 21.4 6.8E+02 0.015 23.4 15.1 98 39-157 43-153 (334)
237 PRK12702 mannosyl-3-phosphogly 21.4 4.2E+02 0.0091 24.9 7.3 154 40-215 19-178 (302)
238 PRK12581 oxaloacetate decarbox 21.4 8.4E+02 0.018 24.5 13.9 112 40-167 103-215 (468)
239 COG1151 6Fe-6S prismane cluste 21.4 4.3E+02 0.0093 27.1 7.8 96 110-210 360-464 (576)
240 COG1880 CdhB CO dehydrogenase/ 21.3 5.1E+02 0.011 21.9 8.2 98 40-154 48-169 (170)
241 TIGR00381 cdhD CO dehydrogenas 21.2 7.8E+02 0.017 24.0 13.1 103 110-219 128-253 (389)
242 PRK07531 bifunctional 3-hydrox 21.1 7.9E+02 0.017 24.7 10.0 123 127-274 80-217 (495)
243 TIGR02660 nifV_homocitr homoci 21.0 7.4E+02 0.016 23.7 12.7 141 113-301 25-180 (365)
244 TIGR03070 couple_hipB transcri 20.9 1E+02 0.0022 20.0 2.6 24 254-277 5-28 (58)
245 PF00724 Oxidored_FMN: NADH:fl 20.7 5.1E+02 0.011 24.6 8.2 140 39-185 139-320 (341)
246 TIGR00238 KamA family protein. 20.7 7.2E+02 0.016 23.5 12.6 74 145-219 178-263 (331)
247 PTZ00413 lipoate synthase; Pro 20.5 8.1E+02 0.018 24.0 10.6 158 39-216 177-372 (398)
248 COG0820 Predicted Fe-S-cluster 20.5 4.8E+02 0.01 25.1 7.7 88 131-219 216-332 (349)
249 PRK05718 keto-hydroxyglutarate 20.5 5.9E+02 0.013 22.5 7.9 52 40-94 25-76 (212)
250 PRK00396 rnpA ribonuclease P; 20.4 4.7E+02 0.01 21.2 6.7 49 107-155 61-112 (130)
251 KOG3445 Mitochondrial/chloropl 20.3 1.5E+02 0.0033 24.3 3.7 83 75-176 16-99 (145)
252 PF08418 Pol_alpha_B_N: DNA po 20.3 1E+02 0.0022 27.9 3.1 49 249-298 8-59 (253)
253 COG1861 SpsF Spore coat polysa 20.3 2.4E+02 0.0053 25.3 5.2 81 21-129 44-126 (241)
254 cd03174 DRE_TIM_metallolyase D 20.2 6.2E+02 0.013 22.5 13.5 24 39-62 16-39 (265)
255 cd07939 DRE_TIM_NifV Streptomy 20.2 6.4E+02 0.014 22.7 16.1 39 39-80 17-57 (259)
256 COG1751 Uncharacterized conser 20.1 3.3E+02 0.0072 22.9 5.7 72 41-126 13-85 (186)
257 PRK00087 4-hydroxy-3-methylbut 20.1 4.3E+02 0.0093 27.7 8.1 113 149-297 147-270 (647)
No 1
>COG0667 Tas Predicted oxidoreductases (related to aryl-alcohol dehydrogenases) [Energy production and conversion]
Probab=100.00 E-value=1.2e-66 Score=488.87 Aligned_cols=306 Identities=42% Similarity=0.663 Sum_probs=274.2
Q ss_pred CCceecCCCCcccccceeccccCCCCCCCCCCHHHHHHHHHHHHHcCCCeEeCccCcCCCChhHHHHHHHHhcCC-CCCE
Q 018482 9 IPRVKLGGQGFEVSKLGFGCMGLTGMYNDPVPDEVGISIIKHAFDQGITFFDTADVYGPNNANELLVGKALKQFP-REKV 87 (355)
Q Consensus 9 m~~~~lg~tg~~vs~lglGt~~~~~~~~~~~~~~~~~~~l~~A~~~Gi~~~DtA~~Yg~~g~sE~~lg~~L~~~~-R~~~ 87 (355)
|+|++||++|++||+||||||++|..+.. .+.+++.++|++|+++||||||||+.||. |.||++||++|++.+ |+++
T Consensus 1 m~~r~lG~~gl~vs~lglG~~~~g~~~~~-~~~~~a~~il~~A~d~Gin~~DTA~~Yg~-g~sE~ilG~~l~~~~~Rd~v 78 (316)
T COG0667 1 MKYRRLGRSGLKVSPLGLGTMTLGGDTDD-EEEAEAIEILDAALDAGINFFDTADVYGD-GRSEEILGEALKERGRRDKV 78 (316)
T ss_pred CCceecCCCCceecceeeeccccCCCCCc-hhhhHHHHHHHHHHHcCCCEEECccccCC-CchHHHHHHHHhccCCCCeE
Confidence 78999999999999999999999874222 25567788999999999999999999998 899999999999855 8999
Q ss_pred EEEeeccccccCCCCc-ccCCCHHHHHHHHHHHHHHcCCCcccEEEeccCCCCCCHHHHHHHHHHHHHcCccceeecCCC
Q 018482 88 QLATKFGVVKFDVSGL-VINGTPEYVRACCEASLKRLDVEYIDLYYQHRVDTTVPIEDTMGELKKLVDEGKIKYIGLSEA 166 (355)
Q Consensus 88 ~i~tK~~~~~~~~~~~-~~~~s~~~i~~~~~~sL~~L~~d~iDl~~lh~p~~~~~~~~~~~~L~~l~~~Gkir~iGvS~~ 166 (355)
+|+||++.....+... ..+.++++|+++++.||+|||||||||||+||||..++.++++.+|++|+++||||+||+||+
T Consensus 79 vIaTK~g~~~~~~~~~~~~~~s~~~i~~~v~~SL~RLgtd~IDl~~iH~~d~~~p~~e~~~aL~~l~~~G~ir~iG~S~~ 158 (316)
T COG0667 79 VIATKVGYRPGDPGPNGVFGLSRDHIRRAVEASLKRLGTDYIDLYQLHRPDPETPIEETLEALDELVREGKIRYIGVSNY 158 (316)
T ss_pred EEEEeeccCCCCCCCCccCCCCHHHHHHHHHHHHHHhCCCceeEEEeCCCCCCCCHHHHHHHHHHHHHcCCeeEEEecCC
Confidence 9999999776432122 357899999999999999999999999999999999999999999999999999999999999
Q ss_pred CHHHHHHHhhc-CCceeeccccccccchhhhchHHHHHHhCCcEEecccCCcccCCCCCCCCCCCCcccccc-CCCCCCc
Q 018482 167 SPDTIRRAHAV-HPVTALQMEWSLWTRAIEDEIVPLCRELGIGIVPYSPLGRGFFGGKASVESLPASSILTW-HPRFSGE 244 (355)
Q Consensus 167 ~~~~l~~~~~~-~~~~~~q~~~n~~~~~~~~~~~~~~~~~gi~v~a~spl~~G~L~g~~~~~~~~~~~~~~~-~~~~~~~ 244 (355)
+.+++.++.+. .+++++|.+||+++|..+.+++++|+++||++++|+||++|+|+|++... ..+.+.. .+.+...
T Consensus 159 ~~~~i~~a~~~~~~~~~~Q~~ynl~~R~~e~~l~~~~~~~gi~~~~~spla~G~Ltgk~~~~---~~~~r~~~~~~~~~~ 235 (316)
T COG0667 159 SAEQIAEALAVAAPIDSLQPEYNLLERDAEKELLPLCREEGIGLLAYSPLASGLLTGKYLPG---PEGSRASELPRFQRE 235 (316)
T ss_pred CHHHHHHHHHhcCCceeecccCccccccchhHHHHHHHHcCCeEEEecCccccccCCCcCCC---cchhhccccccchhh
Confidence 99999999999 59999999999999877778999999999999999999999999995443 2223322 2556666
Q ss_pred chhhhHHHHHHHHHHHHHcCCCHHHHHHHHHhhCCCCeeeecCCCCHHHHHHHHhccCCCCCHHHHHHHHhhcCC
Q 018482 245 NIDKNKILYLRLQKLAEKHECNPAQLALAWILHQGDDVAPIPGTTKIKNLDDNIGSLRVKLTNEDLDEISSVIPI 319 (355)
Q Consensus 245 ~~~~~~~~~~~l~~la~~~~~s~~qlal~~~l~~~~v~~vIvG~~~~~~l~~nl~a~~~~Lt~ee~~~i~~~~~~ 319 (355)
..+......+.+.++|+++|+|++|+||+|++++|.|+++|+|+++++||++|+++++..|++++++.|++....
T Consensus 236 ~~~~~~~~~~~l~~~a~~~g~t~aq~ALawvl~~~~v~~~I~Ga~~~~qL~en~~A~~~~L~~~~~~~l~~~~~~ 310 (316)
T COG0667 236 LTERGLAILRALEELAKELGATPAQVALAWVLAQPGVTSPIVGASKAEQLEENLAALDIKLSEEELAALDEISAE 310 (316)
T ss_pred hhHHHHHHHHHHHHHHHHhCCCHHHHHHHHHHhCCCCceEeecCCCHHHHHHHHHHhcCCCCHHHHHHHHHHhhh
Confidence 778889999999999999999999999999999999999999999999999999999999999999999987653
No 2
>KOG1575 consensus Voltage-gated shaker-like K+ channel, subunit beta/KCNAB [Energy production and conversion]
Probab=100.00 E-value=5.1e-64 Score=462.60 Aligned_cols=315 Identities=44% Similarity=0.722 Sum_probs=279.8
Q ss_pred CCCceecCCCCcccccceeccccCCCCCCCCCCHHHHHHHHHHHHHcCCCeEeCccCcCCCChhHHHHHHHHhc--CCCC
Q 018482 8 KIPRVKLGGQGFEVSKLGFGCMGLTGMYNDPVPDEVGISIIKHAFDQGITFFDTADVYGPNNANELLVGKALKQ--FPRE 85 (355)
Q Consensus 8 ~m~~~~lg~tg~~vs~lglGt~~~~~~~~~~~~~~~~~~~l~~A~~~Gi~~~DtA~~Yg~~g~sE~~lg~~L~~--~~R~ 85 (355)
.|+|+++|++|++||++|||||.+.. |+...+++++.+++++|+++|+||||||++||+ +.||.++|+++++ .+|+
T Consensus 11 ~~~~~~lg~~gl~Vs~lglG~m~~~~-~~~~~~~e~a~~~m~~a~e~Gin~fDtAe~Yg~-~~~E~llg~~i~~~~~~R~ 88 (336)
T KOG1575|consen 11 GMLRRKLGNSGLKVSPLGLGCMGWTT-FGGQIDKEEAFELLDHAYEAGINFFDTAEVYGN-GQSEELLGEFIKSRGWRRD 88 (336)
T ss_pred cceeeeccCCCceecceeecceeeec-cccCCCHHHHHHHHHHHHHcCCCEEehhhhcCC-cccHHHHHHHHHhcCCcCC
Confidence 48899999999999999999984433 555579999999999999999999999999998 9999999999998 5799
Q ss_pred CEEEEeeccccccCCCCcccCCCHHHHHHHHHHHHHHcCCCcccEEEeccCCCCCCHHHHHHHHHHHHHcCccceeecCC
Q 018482 86 KVQLATKFGVVKFDVSGLVINGTPEYVRACCEASLKRLDVEYIDLYYQHRVDTTVPIEDTMGELKKLVDEGKIKYIGLSE 165 (355)
Q Consensus 86 ~~~i~tK~~~~~~~~~~~~~~~s~~~i~~~~~~sL~~L~~d~iDl~~lh~p~~~~~~~~~~~~L~~l~~~Gkir~iGvS~ 165 (355)
+++|+||++... +.......+...+.+.++.|+++|+++||||||+||+|+.++.++++++|.+++++|||+|||+|+
T Consensus 89 ~vviaTK~~~~~--~~~~~~G~~~~~i~~~~~~s~~rl~~~~IDl~q~Hr~D~~~piee~m~aL~~lve~Gki~yiGlSe 166 (336)
T KOG1575|consen 89 KVVIATKFGFDY--GGETPRGLSRKHIIEGVRDSLRRLQTDYIDLLQVHRWDPMVPIEETMRALTDLVEQGKIRYWGLSE 166 (336)
T ss_pred cEEEEEEEeccC--CCcCCCCCcHHHHHHHHHHHHHhcCCCeeEEEEEcccCCCCCHHHHHHHHHHHHhcCceEEEEecc
Confidence 999999998765 222234567889999999999999999999999999999999999999999999999999999999
Q ss_pred CCHHHHHHHhhcCC--ceeeccccccccchhh-hchHHHHHHhCCcEEecccCCcccCCCCCC-CCCCCCcccccc----
Q 018482 166 ASPDTIRRAHAVHP--VTALQMEWSLWTRAIE-DEIVPLCRELGIGIVPYSPLGRGFFGGKAS-VESLPASSILTW---- 237 (355)
Q Consensus 166 ~~~~~l~~~~~~~~--~~~~q~~~n~~~~~~~-~~~~~~~~~~gi~v~a~spl~~G~L~g~~~-~~~~~~~~~~~~---- 237 (355)
++++++.++....+ ++++|++||++.|..+ .++++.|++.||++++||||++|+|+|++. ....+.+..+..
T Consensus 167 ~sa~~I~~a~~~~~~p~~s~Q~eysl~~Rd~ee~~i~~~c~~~Gi~li~ysPL~~G~Ltgk~~~~e~~~~~~~~~~~~~~ 246 (336)
T KOG1575|consen 167 WSAEEIREAHAVAPIPIVAVQVEYSLLSRDKEERGIIPLCRELGIGLIAWSPLGRGLLTGKYKLGEDSRNGDKRFQFLGL 246 (336)
T ss_pred CCHHHHHHHHHhcCCCceEeeeechhhhcchhhhhHHHHHHHcCcceEEecccccceeccCccccccccccccccccccc
Confidence 99999999999877 9999999999999855 669999999999999999999999999943 355555543322
Q ss_pred CCCCCCcchhhhHHHHHHHHHHHHHcCCCHHHHHHHHHhhCCCCeeeecCCCCHHHHHHHHhccCCCCCHHHHHHHHhhc
Q 018482 238 HPRFSGENIDKNKILYLRLQKLAEKHECNPAQLALAWILHQGDDVAPIPGTTKIKNLDDNIGSLRVKLTNEDLDEISSVI 317 (355)
Q Consensus 238 ~~~~~~~~~~~~~~~~~~l~~la~~~~~s~~qlal~~~l~~~~v~~vIvG~~~~~~l~~nl~a~~~~Lt~ee~~~i~~~~ 317 (355)
.+.+... ..++...+++.++|+++|+|++|+||+|+++++.|++||||+++.+||++|++|+.+.||++++.+|++..
T Consensus 247 ~~~~~~~--~~~~~~~~~~~~iA~k~g~T~~qlALawv~~~~~v~~pIpG~s~ve~l~eni~Al~~~Lt~e~~~~l~~~~ 324 (336)
T KOG1575|consen 247 SPQTEEG--DKQKPILEALSKIAEKHGCTVPQLALAWVLSNGKVSSPIPGASKIEQLKENIGALSVKLTPEEIKELEEII 324 (336)
T ss_pred ccccchh--hhHHHHHHHHHHHHHHcCCCHHHHHHHHHHHhCCCEEecCCCCcHHHHHHHHhhhhccCCHHHHHHHHHhh
Confidence 2222222 56778899999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCCccCCCCCc
Q 018482 318 PINEVAGDGVI 328 (355)
Q Consensus 318 ~~~~~~~~~~~ 328 (355)
......+.+++
T Consensus 325 ~~~~~~~~~~~ 335 (336)
T KOG1575|consen 325 DKILGFGPRSI 335 (336)
T ss_pred ccccCcCCCCC
Confidence 99888777764
No 3
>PRK09912 L-glyceraldehyde 3-phosphate reductase; Provisional
Probab=100.00 E-value=3.5e-60 Score=452.62 Aligned_cols=313 Identities=27% Similarity=0.471 Sum_probs=259.0
Q ss_pred hhcCCCCceecCCCCcccccceeccccCCCCCCCCCCHHHHHHHHHHHHHcCCCeEeCccCcCC-CChhHHHHHHHHhcC
Q 018482 4 EQRIKIPRVKLGGQGFEVSKLGFGCMGLTGMYNDPVPDEVGISIIKHAFDQGITFFDTADVYGP-NNANELLVGKALKQF 82 (355)
Q Consensus 4 ~~~~~m~~~~lg~tg~~vs~lglGt~~~~~~~~~~~~~~~~~~~l~~A~~~Gi~~~DtA~~Yg~-~g~sE~~lg~~L~~~ 82 (355)
+++..|+||+||+||++||+||||||+. ||...+.+++.++|++|+++|||+||||+.||+ +|.+|+.||++|++.
T Consensus 8 ~~~~~m~~r~lg~tg~~vs~lglG~~~~---~g~~~~~~~~~~~l~~A~~~Gin~~DTA~~YG~~~g~sE~~lG~~l~~~ 84 (346)
T PRK09912 8 ERYGQMQYRYCGKSGLRLPALSLGLWHN---FGHVNALESQRAILRKAFDLGITHFDLANNYGPPPGSAEENFGRLLRED 84 (346)
T ss_pred CCCCCcceeecCCCCcccccccccCccc---cCCCCCHHHHHHHHHHHHHCCCCEEEChhhhCCCCCCcHHHHHHHHHhc
Confidence 3467899999999999999999999973 343336678899999999999999999999993 378999999999862
Q ss_pred ---CCCCEEEEeeccccccCCCCcccCCCHHHHHHHHHHHHHHcCCCcccEEEeccCCCCCCHHHHHHHHHHHHHcCccc
Q 018482 83 ---PREKVQLATKFGVVKFDVSGLVINGTPEYVRACCEASLKRLDVEYIDLYYQHRVDTTVPIEDTMGELKKLVDEGKIK 159 (355)
Q Consensus 83 ---~R~~~~i~tK~~~~~~~~~~~~~~~s~~~i~~~~~~sL~~L~~d~iDl~~lh~p~~~~~~~~~~~~L~~l~~~Gkir 159 (355)
.|++++|+||++.....+ ....+.+++.+++++++||++||+||||+|++|+|+...+++++|++|++|+++||||
T Consensus 85 ~~~~Rd~~~I~TK~g~~~~~~-~~~~~~s~~~i~~~~e~SL~rLg~d~iDl~~lH~~~~~~~~~e~~~al~~l~~~GkIr 163 (346)
T PRK09912 85 FAAYRDELIISTKAGYDMWPG-PYGSGGSRKYLLASLDQSLKRMGLEYVDIFYSHRVDENTPMEETASALAHAVQSGKAL 163 (346)
T ss_pred ccCCCCeEEEEEEecccCCCC-cCCCCCCHHHHHHHHHHHHHHHCCCcEEEEEeCCCCCCCCHHHHHHHHHHHHHcCCee
Confidence 599999999997531111 1112468999999999999999999999999999998888999999999999999999
Q ss_pred eeecCCCCHHHHHHHhhc-----CCceeeccccccccchhh-hchHHHHHHhCCcEEecccCCcccCCCCCCCCCCCCcc
Q 018482 160 YIGLSEASPDTIRRAHAV-----HPVTALQMEWSLWTRAIE-DEIVPLCRELGIGIVPYSPLGRGFFGGKASVESLPASS 233 (355)
Q Consensus 160 ~iGvS~~~~~~l~~~~~~-----~~~~~~q~~~n~~~~~~~-~~~~~~~~~~gi~v~a~spl~~G~L~g~~~~~~~~~~~ 233 (355)
+||||||+.++++++.+. .+++++|++||++++..+ .+++++|+++||++++|+||++|+|+|+.... .|...
T Consensus 164 ~iGvSn~~~~~~~~~~~~~~~~~~~~~~~Q~~ynll~~~~~~~~ll~~~~~~gI~via~spl~~G~Lt~~~~~~-~~~~~ 242 (346)
T PRK09912 164 YVGISSYSPERTQKMVELLREWKIPLLIHQPSYNLLNRWVDKSGLLDTLQNNGVGCIAFTPLAQGLLTGKYLNG-IPQDS 242 (346)
T ss_pred EEEecCCCHHHHHHHHHHHHhcCCCcEEeeccCCceecccchhhHHHHHHHcCceEEEehhhcCccccCCCCCC-CCCCc
Confidence 999999999988765542 367899999999998654 57999999999999999999999999984322 12111
Q ss_pred ccc----cCCCCCCcch-hhhHHHHHHHHHHHHHcCCCHHHHHHHHHhhCCCCeeeecCCCCHHHHHHHHhcc-CCCCCH
Q 018482 234 ILT----WHPRFSGENI-DKNKILYLRLQKLAEKHECNPAQLALAWILHQGDDVAPIPGTTKIKNLDDNIGSL-RVKLTN 307 (355)
Q Consensus 234 ~~~----~~~~~~~~~~-~~~~~~~~~l~~la~~~~~s~~qlal~~~l~~~~v~~vIvG~~~~~~l~~nl~a~-~~~Lt~ 307 (355)
... ..+.+.+..+ +......+.+.++|+++|+|++|+||+|++++|.|+++|+|+++++||++|++++ .++||+
T Consensus 243 ~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~a~~~g~t~aq~AL~w~l~~~~v~~~i~G~~~~~ql~en~~a~~~~~L~~ 322 (346)
T PRK09912 243 RMHREGNKVRGLTPKMLTEANLNSLRLLNEMAQQRGQSMAQMALSWLLKDERVTSVLIGASRAEQLEENVQALNNLTFST 322 (346)
T ss_pred cccccccchhhhchhhccHHHHHHHHHHHHHHHHhCCCHHHHHHHHHHhCCCCeEEEeCCCCHHHHHHHHhhhcCCCCCH
Confidence 100 0011222211 3445677899999999999999999999999999999999999999999999998 489999
Q ss_pred HHHHHHHhhcCCCc
Q 018482 308 EDLDEISSVIPINE 321 (355)
Q Consensus 308 ee~~~i~~~~~~~~ 321 (355)
+|++.|+++.+..+
T Consensus 323 e~~~~l~~~~~~~~ 336 (346)
T PRK09912 323 EELAQIDQHIADGE 336 (346)
T ss_pred HHHHHHHHhhCccc
Confidence 99999999886544
No 4
>TIGR01293 Kv_beta voltage-dependent potassium channel beta subunit, animal. Plant beta subunits and their closely related bacterial homologs (in Deinococcus radiudurans, Xylella fastidiosa, etc.) appear more closely related to each other than to animal forms. However, the bacterial species lack convincing counterparts the Kv alpha subunit and the Kv beta homolog may serve as an enzyme. Cutoffs are set for this model such that yeast and plant forms and bacterial close homologs score between trusted and noise cutoffs.
Probab=100.00 E-value=7.3e-60 Score=445.73 Aligned_cols=299 Identities=29% Similarity=0.476 Sum_probs=251.0
Q ss_pred ceecCCCCcccccceeccccCCCCCCCCCCHHHHHHHHHHHHHcCCCeEeCccCcCCCChhHHHHHHHHhc--CCCCCEE
Q 018482 11 RVKLGGQGFEVSKLGFGCMGLTGMYNDPVPDEVGISIIKHAFDQGITFFDTADVYGPNNANELLVGKALKQ--FPREKVQ 88 (355)
Q Consensus 11 ~~~lg~tg~~vs~lglGt~~~~~~~~~~~~~~~~~~~l~~A~~~Gi~~~DtA~~Yg~~g~sE~~lg~~L~~--~~R~~~~ 88 (355)
||+||+||++||+||||||++ ||...+.+++.++|++|+++|||+||||+.||. |.||+++|++|+. .+|++++
T Consensus 1 ~r~lg~tg~~vs~lglGt~~~---~g~~~~~~~a~~~l~~al~~Gi~~~DTA~~Yg~-g~sE~~lG~~l~~~~~~R~~~~ 76 (317)
T TIGR01293 1 YRNLGKSGLRVSCLGLGTWVT---FGGQISDEMAEQLLTLAYENGINLFDTAEVYAA-GKAEVVLGNILKKKGWRRSSYV 76 (317)
T ss_pred CcccCCCCCeecceeecCCcc---CCCCCCHHHHHHHHHHHHHcCCCeEECccccCC-CccHHHHHHHHHhcCCCcccEE
Confidence 588999999999999999974 333357889999999999999999999999997 8899999999985 3699999
Q ss_pred EEeeccccccCCCCcccCCCHHHHHHHHHHHHHHcCCCcccEEEeccCCCCCCHHHHHHHHHHHHHcCccceeecCCCCH
Q 018482 89 LATKFGVVKFDVSGLVINGTPEYVRACCEASLKRLDVEYIDLYYQHRVDTTVPIEDTMGELKKLVDEGKIKYIGLSEASP 168 (355)
Q Consensus 89 i~tK~~~~~~~~~~~~~~~s~~~i~~~~~~sL~~L~~d~iDl~~lh~p~~~~~~~~~~~~L~~l~~~Gkir~iGvS~~~~ 168 (355)
|+||+++.... ....+++++.+++++++||++||+||||+|++|||+...+++++|++|++|+++||||+||||||+.
T Consensus 77 iaTK~~~~~~~--~~~~~~~~~~i~~~~~~SL~rL~td~iDl~~lH~~~~~~~~~e~~~aL~~l~~~G~ir~iGvSn~~~ 154 (317)
T TIGR01293 77 ITTKIFWGGKA--ETERGLSRKHIIEGLKASLERLQLEYVDIVFANRPDPNTPMEETVRAMTYVINQGMAMYWGTSRWSS 154 (317)
T ss_pred EEeeeccCCCC--CCCCCCCHHHHHHHHHHHHHHhCCCcEeEEEeccCCCCCCHHHHHHHHHHHHHcCCeeEEEecCCCH
Confidence 99998642110 0113468999999999999999999999999999998888999999999999999999999999999
Q ss_pred HHHHHHhhc------CCceeeccccccccchh-hhchHHHHHHhCCcEEecccCCcccCCCCCCCCCCCCccccccC--C
Q 018482 169 DTIRRAHAV------HPVTALQMEWSLWTRAI-EDEIVPLCRELGIGIVPYSPLGRGFFGGKASVESLPASSILTWH--P 239 (355)
Q Consensus 169 ~~l~~~~~~------~~~~~~q~~~n~~~~~~-~~~~~~~~~~~gi~v~a~spl~~G~L~g~~~~~~~~~~~~~~~~--~ 239 (355)
+++.++... .+++++|.+||++.+.. +.+++++|+++||++++|+||++|+|+|++... .|........ +
T Consensus 155 ~~l~~~~~~~~~~~~~~~~~~Q~~~~l~~r~~~e~~l~~~~~~~gi~v~a~spl~~G~Ltg~~~~~-~~~~~~~~~~~~~ 233 (317)
T TIGR01293 155 MEIMEAYSVARQFNLIPPICEQAEYHMFQREKVEVQLPELYHKIGVGAMTWSPLACGLVSGKYDSG-IPPYSRATLKGYQ 233 (317)
T ss_pred HHHHHHHHHHHHcCCCCcceeccccChHhcchhHHHHHHHHHHcCCeEEEeccccccccCCCCCCC-CCCcccccccccc
Confidence 988776432 46789999999999874 568999999999999999999999999985332 2222111100 0
Q ss_pred CCC----CcchhhhHHHHHHHHHHHHHcCCCHHHHHHHHHhhCCCCeeeecCCCCHHHHHHHHhccCC--CCCHHHHHHH
Q 018482 240 RFS----GENIDKNKILYLRLQKLAEKHECNPAQLALAWILHQGDDVAPIPGTTKIKNLDDNIGSLRV--KLTNEDLDEI 313 (355)
Q Consensus 240 ~~~----~~~~~~~~~~~~~l~~la~~~~~s~~qlal~~~l~~~~v~~vIvG~~~~~~l~~nl~a~~~--~Lt~ee~~~i 313 (355)
.+. ...........+.+.++|+++|+|++|+||+|++++|+|+++|+|+++++||++|+++++. +||++++++|
T Consensus 234 ~~~~~~~~~~~~~~~~~~~~l~~ia~~~g~s~aqlal~w~l~~~~v~~~i~G~~~~~ql~en~~a~~~~~~Ls~e~~~~l 313 (317)
T TIGR01293 234 WLKDKILSEEGRRQQARLKDLQAIAERLGCTLPQLAIAWCLRNEGVSSVLLGASSAEQLMENLGSLQVLPKLSSSIIHEI 313 (317)
T ss_pred hhhhhhcchhhHHHHHHHHHHHHHHHHHCcCHHHHHHHHHhcCCCCeEEEeCCCCHHHHHHHHHHhhccCCCCHHHHHHH
Confidence 111 1112234567788999999999999999999999999999999999999999999999987 9999999999
Q ss_pred Hhh
Q 018482 314 SSV 316 (355)
Q Consensus 314 ~~~ 316 (355)
+++
T Consensus 314 ~~~ 316 (317)
T TIGR01293 314 DSI 316 (317)
T ss_pred Hhh
Confidence 875
No 5
>PRK10625 tas putative aldo-keto reductase; Provisional
Probab=100.00 E-value=3e-59 Score=446.64 Aligned_cols=306 Identities=27% Similarity=0.376 Sum_probs=253.7
Q ss_pred CCceecCCCCcccccceeccccCCCCCCCCCCHHHHHHHHHHHHHcCCCeEeCccCcCC------CChhHHHHHHHHhc-
Q 018482 9 IPRVKLGGQGFEVSKLGFGCMGLTGMYNDPVPDEVGISIIKHAFDQGITFFDTADVYGP------NNANELLVGKALKQ- 81 (355)
Q Consensus 9 m~~~~lg~tg~~vs~lglGt~~~~~~~~~~~~~~~~~~~l~~A~~~Gi~~~DtA~~Yg~------~g~sE~~lg~~L~~- 81 (355)
|+||+||+||++||.||||||++|. ..+.+++.++|+.|++.|||+||||+.||. .|.||.++|++|++
T Consensus 1 m~~r~lg~t~~~vs~iglGt~~~g~----~~~~~~a~~~l~~al~~Gi~~~DTA~~Yg~~~~~~~~g~sE~~iG~aL~~~ 76 (346)
T PRK10625 1 MQYHRIPHSSLEVSTLGLGTMTFGE----QNSEADAHAQLDYAVAQGINLIDVAEMYPVPPRPETQGLTETYIGNWLAKR 76 (346)
T ss_pred CCceecCCCCCccccEeEeccccCC----CCCHHHHHHHHHHHHHcCCCEEECccccCCCcCCCCCCchHHHHHHHHhhc
Confidence 7899999999999999999999764 236789999999999999999999999972 27799999999985
Q ss_pred CCCCCEEEEeeccccccCCCC---cccCCCHHHHHHHHHHHHHHcCCCcccEEEeccCCC-----------------CCC
Q 018482 82 FPREKVQLATKFGVVKFDVSG---LVINGTPEYVRACCEASLKRLDVEYIDLYYQHRVDT-----------------TVP 141 (355)
Q Consensus 82 ~~R~~~~i~tK~~~~~~~~~~---~~~~~s~~~i~~~~~~sL~~L~~d~iDl~~lh~p~~-----------------~~~ 141 (355)
.+|++++|+||++........ ...+++++.+++++++||++||+||||||++|||+. .++
T Consensus 77 ~~R~~v~i~TK~~~~~~~~~~~~~~~~~~s~~~i~~~~e~SL~rL~~d~iDl~~lH~p~~~~~~~~~~~~~~~~~~~~~~ 156 (346)
T PRK10625 77 GSREKLIIASKVSGPSRNNDKGIRPNQALDRKNIREALHDSLKRLQTDYLDLYQVHWPQRPTNCFGKLGYSWTDSAPAVS 156 (346)
T ss_pred CCcceEEEEcccccCCcCCCCCcCCCCCCCHHHHHHHHHHHHHHhCCCeEeEEEeeccCcccccccccccccccccCCCC
Confidence 359999999999642210000 012578999999999999999999999999999964 245
Q ss_pred HHHHHHHHHHHHHcCccceeecCCCCHHHHHHHhhc------CCceeeccccccccchhhhchHHHHHHhCCcEEecccC
Q 018482 142 IEDTMGELKKLVDEGKIKYIGLSEASPDTIRRAHAV------HPVTALQMEWSLWTRAIEDEIVPLCRELGIGIVPYSPL 215 (355)
Q Consensus 142 ~~~~~~~L~~l~~~Gkir~iGvS~~~~~~l~~~~~~------~~~~~~q~~~n~~~~~~~~~~~~~~~~~gi~v~a~spl 215 (355)
++++|++|++|+++||||+||+|||+.+++++++.. ..++++|.+||++++..+.+++++|+++||++++|+||
T Consensus 157 ~~e~~~aL~~l~~~GkIr~iGvSn~~~~~l~~~~~~~~~~~~~~~~~~q~~y~l~~r~~~~~ll~~~~~~gi~via~spL 236 (346)
T PRK10625 157 LLETLDALAEQQRAGKIRYIGVSNETAFGVMRYLHLAEKHDLPRIVTIQNPYSLLNRSFEVGLAEVSQYEGVELLAYSCL 236 (346)
T ss_pred HHHHHHHHHHHHHCCCeEEEEecCCCHHHHHHHHHHHHHcCCCCcEEecCCCCcccccchhHHHHHHHHcCCeEEEeccc
Confidence 789999999999999999999999999888765432 35788999999999876678999999999999999999
Q ss_pred CcccCCCCCCCCCCCCccccccCCCCCCcchhhhHHHHHHHHHHHHHcCCCHHHHHHHHHhhCCCCeeeecCCCCHHHHH
Q 018482 216 GRGFFGGKASVESLPASSILTWHPRFSGENIDKNKILYLRLQKLAEKHECNPAQLALAWILHQGDDVAPIPGTTKIKNLD 295 (355)
Q Consensus 216 ~~G~L~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~la~~~~~s~~qlal~~~l~~~~v~~vIvG~~~~~~l~ 295 (355)
++|+|+|+......|........+.|.....+......+.+.++|+++|+|++|+||+|++++|.|+++|+|+++++||+
T Consensus 237 ~~G~Ltg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~la~~~g~t~aqval~w~l~~~~v~~~I~G~~~~~~l~ 316 (346)
T PRK10625 237 AFGTLTGKYLNGAKPAGARNTLFSRFTRYSGEQTQKAVAAYVDIAKRHGLDPAQMALAFVRRQPFVASTLLGATTMEQLK 316 (346)
T ss_pred cCeeccCCCCCCCCCCCcccccccccccccchhHHHHHHHHHHHHHHhCCCHHHHHHHHHHhCCCCeeEEeCCCCHHHHH
Confidence 99999998533222322111111112111123456677899999999999999999999999999999999999999999
Q ss_pred HHHhccCCCCCHHHHHHHHhhcC
Q 018482 296 DNIGSLRVKLTNEDLDEISSVIP 318 (355)
Q Consensus 296 ~nl~a~~~~Lt~ee~~~i~~~~~ 318 (355)
+|+++++++||++|++.|+++.+
T Consensus 317 en~~a~~~~L~~~~~~~l~~~~~ 339 (346)
T PRK10625 317 TNIESLHLTLSEEVLAEIEAVHQ 339 (346)
T ss_pred HHHhhccCCCCHHHHHHHHHHHh
Confidence 99999999999999999999864
No 6
>COG0656 ARA1 Aldo/keto reductases, related to diketogulonate reductase [General function prediction only]
Probab=100.00 E-value=1.8e-59 Score=424.95 Aligned_cols=258 Identities=33% Similarity=0.529 Sum_probs=231.5
Q ss_pred CCceecCCCCcccccceeccccCCCCCCCCCCHHHHHHHHHHHHHcCCCeEeCccCcCCCChhHHHHHHHHhc--CCCCC
Q 018482 9 IPRVKLGGQGFEVSKLGFGCMGLTGMYNDPVPDEVGISIIKHAFDQGITFFDTADVYGPNNANELLVGKALKQ--FPREK 86 (355)
Q Consensus 9 m~~~~lg~tg~~vs~lglGt~~~~~~~~~~~~~~~~~~~l~~A~~~Gi~~~DtA~~Yg~~g~sE~~lg~~L~~--~~R~~ 86 (355)
+++.+| ++|.+||.||||||+++. .+.+.+.|.+|++.|+|+||||..|| +|+.+|+++++ .+|++
T Consensus 3 ~~~~~l-~~g~~iP~iGlGt~~~~~-------~~~~~~av~~Al~~Gyr~IDTA~~Yg----nE~~VG~aI~~s~v~Ree 70 (280)
T COG0656 3 KTKVTL-NNGVEIPAIGLGTWQIGD-------DEWAVRAVRAALELGYRLIDTAEIYG----NEEEVGEAIKESGVPREE 70 (280)
T ss_pred Cceeec-CCCCcccCcceEeeecCC-------chhHHHHHHHHHHhCcceEecHhHhc----CHHHHHHHHHhcCCCHHH
Confidence 456777 667889999999998753 23388999999999999999999999 89999999998 68999
Q ss_pred EEEEeeccccccCCCCcccCCCHHHHHHHHHHHHHHcCCCcccEEEeccCCCC--CCHHHHHHHHHHHHHcCccceeecC
Q 018482 87 VQLATKFGVVKFDVSGLVINGTPEYVRACCEASLKRLDVEYIDLYYQHRVDTT--VPIEDTMGELKKLVDEGKIKYIGLS 164 (355)
Q Consensus 87 ~~i~tK~~~~~~~~~~~~~~~s~~~i~~~~~~sL~~L~~d~iDl~~lh~p~~~--~~~~~~~~~L~~l~~~Gkir~iGvS 164 (355)
+||+||+|+.. ++++.+.+++++||++||+||+|||+||||.+. ..++|+|++|++++++||||+||||
T Consensus 71 lFittKvw~~~---------~~~~~~~~a~e~Sl~rLg~dyvDLyLiHwP~~~~~~~~~etw~alE~l~~~G~ir~IGVS 141 (280)
T COG0656 71 LFITTKVWPSD---------LGYDETLKALEASLKRLGLDYVDLYLIHWPVPNKYVVIEETWKALEELVDEGLIRAIGVS 141 (280)
T ss_pred eEEEeecCCcc---------CCcchHHHHHHHHHHHhCCCceeEEEECCCCCccCccHHHHHHHHHHHHhcCCccEEEee
Confidence 99999999764 568899999999999999999999999999752 3378999999999999999999999
Q ss_pred CCCHHHHHHHhhc--CCceeeccccccccchhhhchHHHHHHhCCcEEecccCCccc-CCCCCCCCCCCCccccccCCCC
Q 018482 165 EASPDTIRRAHAV--HPVTALQMEWSLWTRAIEDEIVPLCRELGIGIVPYSPLGRGF-FGGKASVESLPASSILTWHPRF 241 (355)
Q Consensus 165 ~~~~~~l~~~~~~--~~~~~~q~~~n~~~~~~~~~~~~~~~~~gi~v~a~spl~~G~-L~g~~~~~~~~~~~~~~~~~~~ 241 (355)
||+.++++++++. ..|+++|++||++.+.. ++++||+++||.+++||||++|- |..
T Consensus 142 NF~~~~L~~l~~~~~~~p~~NQIe~hp~~~q~--el~~~~~~~gI~v~AysPL~~g~~l~~------------------- 200 (280)
T COG0656 142 NFGVEHLEELLSLAKVKPAVNQIEYHPYLRQP--ELLPFCQRHGIAVEAYSPLAKGGKLLD------------------- 200 (280)
T ss_pred CCCHHHHHHHHHhcCCCCceEEEEeccCCCcH--HHHHHHHHcCCEEEEECCccccccccc-------------------
Confidence 9999999999877 45899999999999965 49999999999999999999643 221
Q ss_pred CCcchhhhHHHHHHHHHHHHHcCCCHHHHHHHHHhhCCCCeeeecCCCCHHHHHHHHhccCCCCCHHHHHHHHhhcCCCc
Q 018482 242 SGENIDKNKILYLRLQKLAEKHECNPAQLALAWILHQGDDVAPIPGTTKIKNLDDNIGSLRVKLTNEDLDEISSVIPINE 321 (355)
Q Consensus 242 ~~~~~~~~~~~~~~l~~la~~~~~s~~qlal~~~l~~~~v~~vIvG~~~~~~l~~nl~a~~~~Lt~ee~~~i~~~~~~~~ 321 (355)
-+.+.+||++||.|++|++|+|+++++ .++||.+++++|+++|++++++.||+|||+.|+.+.+...
T Consensus 201 -----------~~~l~~Ia~k~g~t~AQv~L~W~i~~g--v~~Ipks~~~~ri~eN~~~~~f~Ls~ed~~~i~~l~~~~~ 267 (280)
T COG0656 201 -----------NPVLAEIAKKYGKTPAQVALRWHIQRG--VIVIPKSTTPERIRENLAAFDFELSEEDMAAIDALDRGYG 267 (280)
T ss_pred -----------ChHHHHHHHHhCCCHHHHHHHHHHhCC--cEEecCCCCHHHHHHHHhhhcCCCCHHHHHHHHhhccccC
Confidence 147899999999999999999999999 5999999999999999999999999999999999998653
No 7
>PLN02587 L-galactose dehydrogenase
Probab=100.00 E-value=2.6e-57 Score=427.91 Aligned_cols=286 Identities=26% Similarity=0.453 Sum_probs=245.1
Q ss_pred ceecCCCCcccccceeccccCCCCCCCCCCHHHHHHHHHHHHHcCCCeEeCccCcCCCChhHHHHHHHHhc--CCCCCEE
Q 018482 11 RVKLGGQGFEVSKLGFGCMGLTGMYNDPVPDEVGISIIKHAFDQGITFFDTADVYGPNNANELLVGKALKQ--FPREKVQ 88 (355)
Q Consensus 11 ~~~lg~tg~~vs~lglGt~~~~~~~~~~~~~~~~~~~l~~A~~~Gi~~~DtA~~Yg~~g~sE~~lg~~L~~--~~R~~~~ 88 (355)
||+||+||++||.||||||++|..|+. .+.+++.++|++|++.|||+||||+.||. |.+|+.+|++|++ .+|++++
T Consensus 1 ~r~lg~t~~~vs~lglG~~~~g~~~~~-~~~~~~~~~l~~A~~~Gin~~DTA~~Yg~-g~sE~~lG~al~~~~~~R~~v~ 78 (314)
T PLN02587 1 LRELGSTGLKVSSVGFGASPLGSVFGP-VSEEDAIASVREAFRLGINFFDTSPYYGG-TLSEKVLGKALKALGIPREKYV 78 (314)
T ss_pred CCcCCCCCCcccCcccccccccCCCCC-CCHHHHHHHHHHHHHcCCCEEECcCccCC-CchHHHHHHHHHhCCCCcceEE
Confidence 689999999999999999999876664 47889999999999999999999999998 8999999999987 4699999
Q ss_pred EEeeccccccCCCCcccCCCHHHHHHHHHHHHHHcCCCcccEEEeccCCCC---CCHHHHHHHHHHHHHcCccceeecCC
Q 018482 89 LATKFGVVKFDVSGLVINGTPEYVRACCEASLKRLDVEYIDLYYQHRVDTT---VPIEDTMGELKKLVDEGKIKYIGLSE 165 (355)
Q Consensus 89 i~tK~~~~~~~~~~~~~~~s~~~i~~~~~~sL~~L~~d~iDl~~lh~p~~~---~~~~~~~~~L~~l~~~Gkir~iGvS~ 165 (355)
|+||++.... ..+++++.+++++++||++||+||||+|+||+|+.. ..++++|++|++|+++||||+||+||
T Consensus 79 I~TK~~~~~~-----~~~~~~~~i~~~~e~SL~rL~~d~iDl~~lH~~~~~~~~~~~~~~~~~l~~l~~~Gkir~iGvSn 153 (314)
T PLN02587 79 VSTKCGRYGE-----GFDFSAERVTKSVDESLARLQLDYVDILHCHDIEFGSLDQIVNETIPALQKLKESGKVRFIGITG 153 (314)
T ss_pred EEeccccCCC-----CCCCCHHHHHHHHHHHHHHhCCCCeeEEEecCCCCcchhhhHHHHHHHHHHHHHCCCeEEEEecC
Confidence 9999985321 135789999999999999999999999999999642 34678999999999999999999999
Q ss_pred CCHHHHHHHhhc---C--CceeeccccccccchhhhchHHHHHHhCCcEEecccCCcccCCCCCCCCCCCCccccccCCC
Q 018482 166 ASPDTIRRAHAV---H--PVTALQMEWSLWTRAIEDEIVPLCRELGIGIVPYSPLGRGFFGGKASVESLPASSILTWHPR 240 (355)
Q Consensus 166 ~~~~~l~~~~~~---~--~~~~~q~~~n~~~~~~~~~~~~~~~~~gi~v~a~spl~~G~L~g~~~~~~~~~~~~~~~~~~ 240 (355)
|+.++++.+... . .+..+|..||+..+.. .+++++|+++||++++|+||++|+|+|+....
T Consensus 154 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~-~~ll~~~~~~gi~v~a~spl~~G~L~~~~~~~------------- 219 (314)
T PLN02587 154 LPLAIFTYVLDRVPPGTVDVILSYCHYSLNDSSL-EDLLPYLKSKGVGVISASPLAMGLLTENGPPE------------- 219 (314)
T ss_pred CCHHHHHHHHHhhhcCCCCeEEeccccCcchhhH-HHHHHHHHHcCceEEEechhhccccCCCCCCC-------------
Confidence 999888776543 2 2344578899877644 58999999999999999999999999863110
Q ss_pred CCCcchhhhHHHHHHHHHHHHHcCCCHHHHHHHHHhhCCCCeeeecCCCCHHHHHHHHhccC----CCCCHHHHHHHHhh
Q 018482 241 FSGENIDKNKILYLRLQKLAEKHECNPAQLALAWILHQGDDVAPIPGTTKIKNLDDNIGSLR----VKLTNEDLDEISSV 316 (355)
Q Consensus 241 ~~~~~~~~~~~~~~~l~~la~~~~~s~~qlal~~~l~~~~v~~vIvG~~~~~~l~~nl~a~~----~~Lt~ee~~~i~~~ 316 (355)
+.+ ..+......+.+.++|+++++|++|+||+|++++|.|++||+|+++++||++|++++. .+|+++++++|+++
T Consensus 220 ~~~-~~~~~~~~~~~l~~~a~~~~~s~aq~al~~~l~~~~v~~~i~G~~~~~~l~~nl~a~~~~~~~~l~~~~~~~l~~~ 298 (314)
T PLN02587 220 WHP-APPELKSACAAAATHCKEKGKNISKLALQYSLSNKDISTTLVGMNSVQQVEENVAAATELETSGIDEELLSEVEAI 298 (314)
T ss_pred CCC-CCHHHHHHHHHHHHHHHHhCCCHHHHHHHHHHhCCCCeeEEecCCCHHHHHHHHHHHhhcccCCCCHHHHHHHHHh
Confidence 000 0134556778899999999999999999999999999999999999999999999975 37999999999988
Q ss_pred cC
Q 018482 317 IP 318 (355)
Q Consensus 317 ~~ 318 (355)
.+
T Consensus 299 ~~ 300 (314)
T PLN02587 299 LA 300 (314)
T ss_pred hc
Confidence 75
No 8
>cd06660 Aldo_ket_red Aldo-keto reductases (AKRs) are a superfamily of soluble NAD(P)(H) oxidoreductases whose chief purpose is to reduce aldehydes and ketones to primary and secondary alcohols. AKRs are present in all phyla and are of importance to both health and industrial applications. Members have very distinct functions and include the prokaryotic 2,5-diketo-D-gluconic acid reductases and beta-keto ester reductases, the eukaryotic aldose reductases, aldehyde reductases, hydroxysteroid dehydrogenases, steroid 5beta-reductases, potassium channel beta-subunits and aflatoxin aldehyde reductases, among others.
Probab=100.00 E-value=4.2e-56 Score=414.24 Aligned_cols=280 Identities=42% Similarity=0.681 Sum_probs=250.5
Q ss_pred ceecCCCCcccccceeccccCCCCCCCCCCHHHHHHHHHHHHHcCCCeEeCccCcCCCChhHHHHHHHHhcCC-CCCEEE
Q 018482 11 RVKLGGQGFEVSKLGFGCMGLTGMYNDPVPDEVGISIIKHAFDQGITFFDTADVYGPNNANELLVGKALKQFP-REKVQL 89 (355)
Q Consensus 11 ~~~lg~tg~~vs~lglGt~~~~~~~~~~~~~~~~~~~l~~A~~~Gi~~~DtA~~Yg~~g~sE~~lg~~L~~~~-R~~~~i 89 (355)
|++||+||++||+||||||+++..| .+.+++.++++.|++.|||+||||+.||+ |.+|+.+|++|++.+ |++++|
T Consensus 1 ~r~lg~tg~~vs~lg~G~~~~~~~~---~~~~~~~~~l~~A~~~Gi~~iDTA~~Yg~-g~sE~~lG~al~~~~~R~~~~i 76 (285)
T cd06660 1 YRTLGKTGLKVSRLGLGTWQLGGGY---VDEEEAAAAVRAALDAGINFIDTADVYGD-GESEELLGEALKERGPREEVFI 76 (285)
T ss_pred CcccCCCCceecCcceeccccCCCC---CCHHHHHHHHHHHHHcCCCeEECccccCC-CCCHHHHHHHHhccCCcCcEEE
Confidence 5789999999999999999987655 47899999999999999999999999998 899999999999865 999999
Q ss_pred EeeccccccCCCCcccCCCHHHHHHHHHHHHHHcCCCcccEEEeccCCCCCC-HHHHHHHHHHHHHcCccceeecCCCCH
Q 018482 90 ATKFGVVKFDVSGLVINGTPEYVRACCEASLKRLDVEYIDLYYQHRVDTTVP-IEDTMGELKKLVDEGKIKYIGLSEASP 168 (355)
Q Consensus 90 ~tK~~~~~~~~~~~~~~~s~~~i~~~~~~sL~~L~~d~iDl~~lh~p~~~~~-~~~~~~~L~~l~~~Gkir~iGvS~~~~ 168 (355)
+||++..... .++.+++.+++++++||++|+++|||+|+||+|+.... ..++|++|++++++|+||+|||||++.
T Consensus 77 ~tK~~~~~~~----~~~~~~~~~~~~l~~sL~~L~~~~iDl~~lh~~~~~~~~~~~~~~~l~~l~~~G~ir~iGvS~~~~ 152 (285)
T cd06660 77 ATKVGPRPGD----GRDLSPEHIRRAVEESLKRLGTDYIDLYLLHWPDPDTPDIEETLRALEELVKEGKIRAIGVSNFSA 152 (285)
T ss_pred EeeecCCCCC----CCCCCHHHHHHHHHHHHHHhCCCceeEEEecCCCCCCCCHHHHHHHHHHHHHcCCccEEEeeCCCH
Confidence 9999865321 14578999999999999999999999999999987765 789999999999999999999999999
Q ss_pred HHHHHHhhc--CCceeeccccccccchhhhchHHHHHHhCCcEEecccCCcccCCCCCCCCCCCCccccccCCCCCCcch
Q 018482 169 DTIRRAHAV--HPVTALQMEWSLWTRAIEDEIVPLCRELGIGIVPYSPLGRGFFGGKASVESLPASSILTWHPRFSGENI 246 (355)
Q Consensus 169 ~~l~~~~~~--~~~~~~q~~~n~~~~~~~~~~~~~~~~~gi~v~a~spl~~G~L~g~~~~~~~~~~~~~~~~~~~~~~~~ 246 (355)
+.++++... .+|+++|++||++++..+.+++++|+++||++++|+||++|.|+++......+.
T Consensus 153 ~~l~~~~~~~~~~~~~~q~~~n~~~~~~~~~~~~~~~~~gi~v~~~~~l~~g~l~~~~~~~~~~~--------------- 217 (285)
T cd06660 153 EQLEEALAAAGVPPAVNQVEYNLLDRQAEEELLPYCREHGIGVIAYSPLAGGLLTGKYLPGAPPP--------------- 217 (285)
T ss_pred HHHHHHHHhhCCCceEEecccCcccCchHHHHHHHHHHcCcEEEEeccccCceecCCCCCCCCCC---------------
Confidence 999999888 899999999999999865679999999999999999999999887632111100
Q ss_pred hhhHHHHHHHHHHHHHcCCCHHHHHHHHHhhCCCCeeeecCCCCHHHHHHHHhccCCCCCHHHHHHHHh
Q 018482 247 DKNKILYLRLQKLAEKHECNPAQLALAWILHQGDDVAPIPGTTKIKNLDDNIGSLRVKLTNEDLDEISS 315 (355)
Q Consensus 247 ~~~~~~~~~l~~la~~~~~s~~qlal~~~l~~~~v~~vIvG~~~~~~l~~nl~a~~~~Lt~ee~~~i~~ 315 (355)
.......+..++++++++++|+|++|++++|.++++|+|+++++||++|+++..++||+++++.|++
T Consensus 218 --~~~~~~~~~~~~~~~~~s~~q~al~~~l~~p~~~~~i~g~~~~~~l~~n~~~~~~~L~~~~~~~l~~ 284 (285)
T cd06660 218 --EGDLLEALKEIAEKHGVTPAQVALRWLLQQPGVTSVIPGASSPERLEENLAALDFELSDEDLAALDA 284 (285)
T ss_pred --hhhHHHHHHHHHHHhCCCHHHHHHHHHhcCCCCeEEEeCCCCHHHHHHHHhhccCCCCHHHHHHHhh
Confidence 0114568899999999999999999999999999999999999999999999999999999999975
No 9
>PRK10376 putative oxidoreductase; Provisional
Probab=100.00 E-value=9.5e-55 Score=405.83 Aligned_cols=270 Identities=26% Similarity=0.481 Sum_probs=235.0
Q ss_pred CCcccccceeccccCCC--CCCCCCCHHHHHHHHHHHHHcCCCeEeCccCcCCCChhHHHHHHHHhcCCCCCEEEEeecc
Q 018482 17 QGFEVSKLGFGCMGLTG--MYNDPVPDEVGISIIKHAFDQGITFFDTADVYGPNNANELLVGKALKQFPREKVQLATKFG 94 (355)
Q Consensus 17 tg~~vs~lglGt~~~~~--~~~~~~~~~~~~~~l~~A~~~Gi~~~DtA~~Yg~~g~sE~~lg~~L~~~~R~~~~i~tK~~ 94 (355)
+|++||+||||||++|+ .||...+.+++.++|++|++.|||+||||+.||+ +.+|+++|++++. .|++++|+||++
T Consensus 13 ~g~~vs~iglG~~~lg~~~~~g~~~~~~~~~~~l~~A~~~Gin~~DTA~~Yg~-~~sE~~lg~~l~~-~R~~~~i~TK~g 90 (290)
T PRK10376 13 GGRSVNRLGYGAMQLAGPGVFGPPKDRDAAIAVLREAVALGVNHIDTSDFYGP-HVTNQLIREALHP-YPDDLTIVTKVG 90 (290)
T ss_pred CCeeecccceeccccCCCCcCCCCCCHHHHHHHHHHHHHcCCCeEEChhhcCC-CcHHHHHHHHHhc-CCCeEEEEeeec
Confidence 49999999999999975 3665557888999999999999999999999998 8899999999974 589999999997
Q ss_pred ccccCCCCcccCCCHHHHHHHHHHHHHHcCCCcccEEEeccCCC-----CCCHHHHHHHHHHHHHcCccceeecCCCCHH
Q 018482 95 VVKFDVSGLVINGTPEYVRACCEASLKRLDVEYIDLYYQHRVDT-----TVPIEDTMGELKKLVDEGKIKYIGLSEASPD 169 (355)
Q Consensus 95 ~~~~~~~~~~~~~s~~~i~~~~~~sL~~L~~d~iDl~~lh~p~~-----~~~~~~~~~~L~~l~~~Gkir~iGvS~~~~~ 169 (355)
...........+.+++.+++++++||+|||+||||+|++|+++. ...++++|++|++|+++||||+||||||+.+
T Consensus 91 ~~~~~~~~~~~~~~~~~i~~~~e~SL~rL~td~iDl~~~H~~~~~h~p~~~~~~~~~~~l~~l~~~Gkir~iGvSn~~~~ 170 (290)
T PRK10376 91 ARRGEDGSWLPAFSPAELRRAVHDNLRNLGLDVLDVVNLRLMGDGHGPAEGSIEEPLTVLAELQRQGLVRHIGLSNVTPT 170 (290)
T ss_pred ccCCCCCccCCCCCHHHHHHHHHHHHHHhCCCeEEEEEEeccCCCCCCCCCCHHHHHHHHHHHHHCCceeEEEecCCCHH
Confidence 54321111224578999999999999999999999999888521 2357899999999999999999999999999
Q ss_pred HHHHHhhcCCceeeccccccccchhhhchHHHHHHhCCcEEecccCCcccCCCCCCCCCCCCccccccCCCCCCcchhhh
Q 018482 170 TIRRAHAVHPVTALQMEWSLWTRAIEDEIVPLCRELGIGIVPYSPLGRGFFGGKASVESLPASSILTWHPRFSGENIDKN 249 (355)
Q Consensus 170 ~l~~~~~~~~~~~~q~~~n~~~~~~~~~~~~~~~~~gi~v~a~spl~~G~L~g~~~~~~~~~~~~~~~~~~~~~~~~~~~ 249 (355)
+++++.+..+++++|++||++.+.. .+++++|+++||++++|+||+++..
T Consensus 171 ~l~~~~~~~~~~~~q~~~~~~~~~~-~~~~~~~~~~gi~v~a~~pL~g~~~----------------------------- 220 (290)
T PRK10376 171 QVAEARKIAEIVCVQNHYNLAHRAD-DALIDALARDGIAYVPFFPLGGFTP----------------------------- 220 (290)
T ss_pred HHHHHHhhCCeEEEecccCCCcCCh-HHHHHHHHHcCCEEEEeecCCCCCh-----------------------------
Confidence 9999988889999999999999763 5799999999999999999974310
Q ss_pred HHHHHHHHHHHHHcCCCHHHHHHHHHhhCCCCeeeecCCCCHHHHHHHHhccCCCCCHHHHHHHHhhcCC
Q 018482 250 KILYLRLQKLAEKHECNPAQLALAWILHQGDDVAPIPGTTKIKNLDDNIGSLRVKLTNEDLDEISSVIPI 319 (355)
Q Consensus 250 ~~~~~~l~~la~~~~~s~~qlal~~~l~~~~v~~vIvG~~~~~~l~~nl~a~~~~Lt~ee~~~i~~~~~~ 319 (355)
...+.+.++|+++|+|++|+||+|+++++.++++|+|+++++|+++|+++++++||+++++.|+++.++
T Consensus 221 -~~~~~l~~ia~~~~~t~aq~al~w~l~~~~~~~~i~G~~~~~~l~en~~a~~~~L~~e~~~~l~~~~~~ 289 (290)
T PRK10376 221 -LQSSTLSDVAASLGATPMQVALAWLLQRSPNILLIPGTSSVAHLRENLAAAELVLSEEVLAELDGIARE 289 (290)
T ss_pred -hhhHHHHHHHHHhCCCHHHHHHHHHHhCCCCeeEeeCCCCHHHHHHHHhhccCCCCHHHHHHHHHHHhc
Confidence 012578899999999999999999999977788999999999999999999999999999999988654
No 10
>PF00248 Aldo_ket_red: Aldo/keto reductase family; InterPro: IPR023210 The aldo-keto reductase family includes a number of related monomeric NADPH-dependent oxidoreductases, such as aldehyde reductase, aldose reductase, prostaglandin F synthase, xylose reductase, rho crystallin, and many others []. All possess a similar structure, with a beta-alpha-beta fold characteristic of nucleotide binding proteins []. The fold comprises a parallel beta-8/alpha-8-barrel, which contains a novel NADP-binding motif. The binding site is located in a large, deep, elliptical pocket in the C-terminal end of the beta sheet, the substrate being bound in an extended conformation. The hydrophobic nature of the pocket favours aromatic and apolar substrates over highly polar ones []. Binding of the NADPH coenzyme causes a massive conformational change, reorienting a loop, effectively locking the coenzyme in place. This binding is more similar to FAD- than to NAD(P)-binding oxidoreductases []. Some proteins of this entry contain a K+ ion channel beta chain regulatory domain; these are reported to have oxidoreductase activity []. This entry represents the NADP-dependent oxidoreductase domain found in these proteins.; PDB: 1C9W_A 4F40_B 1VBJ_A 1XGD_A 1X97_A 2ACS_A 1EF3_A 2ACU_A 1PWM_A 2NVD_A ....
Probab=100.00 E-value=3.1e-55 Score=407.95 Aligned_cols=277 Identities=35% Similarity=0.597 Sum_probs=234.0
Q ss_pred cceeccccCCCCCCCCCCHHHHHHHHHHHHHcCCCeEeCccCcCCCChhHHHHHHHHhc--CCCCCEEEEeeccccccCC
Q 018482 23 KLGFGCMGLTGMYNDPVPDEVGISIIKHAFDQGITFFDTADVYGPNNANELLVGKALKQ--FPREKVQLATKFGVVKFDV 100 (355)
Q Consensus 23 ~lglGt~~~~~~~~~~~~~~~~~~~l~~A~~~Gi~~~DtA~~Yg~~g~sE~~lg~~L~~--~~R~~~~i~tK~~~~~~~~ 100 (355)
+||||||+++.. ..+.+++.++|+.|++.|||+||||+.||+ |.+|+.+|++|++ .+|++++|+||+...
T Consensus 1 ~l~lG~~~~~~~---~~~~~~~~~~l~~a~~~Gin~~DtA~~Y~~-g~sE~~lg~~l~~~~~~r~~~~i~tK~~~~---- 72 (283)
T PF00248_consen 1 PLGLGTWRLGGE---RVSEEEAEAILRRALEAGINFFDTADSYGN-GRSERILGRALRKSRVPRDDIFISTKVYGD---- 72 (283)
T ss_dssp SBEEECTTBTTT---TSTHHHHHHHHHHHHHTT--EEEECGGGGG-GTHHHHHHHHHHHTSSTGGGSEEEEEEESS----
T ss_pred CEEEEccccCCC---CCCHHHHHHHHHHHHHcCCCeecccccccc-cccccccccccccccccccccccccccccc----
Confidence 589999998752 469999999999999999999999999987 8899999999998 689999999999211
Q ss_pred CCcccCCCHHHHHHHHHHHHHHcCCCcccEEEeccCCCCCC-HHHHHHHHHHHHHcCccceeecCCCCHHHHHHH--hhc
Q 018482 101 SGLVINGTPEYVRACCEASLKRLDVEYIDLYYQHRVDTTVP-IEDTMGELKKLVDEGKIKYIGLSEASPDTIRRA--HAV 177 (355)
Q Consensus 101 ~~~~~~~s~~~i~~~~~~sL~~L~~d~iDl~~lh~p~~~~~-~~~~~~~L~~l~~~Gkir~iGvS~~~~~~l~~~--~~~ 177 (355)
.....+++++.+++++++||++||+||||+|+||+|+.... .+++|++|++|+++|+||+||||||+.+.++.+ ...
T Consensus 73 ~~~~~~~~~~~i~~~~~~sL~~L~~d~iDl~~lH~~~~~~~~~~~~~~~l~~l~~~G~ir~iGvs~~~~~~l~~~~~~~~ 152 (283)
T PF00248_consen 73 GKPEPDYSPDSIRESLERSLERLGTDYIDLLLLHWPDPSEDALEEVWEALEELKKEGKIRHIGVSNFSPEQLEAALKIGS 152 (283)
T ss_dssp SSTGGGSSHHHHHHHHHHHHHHHTSSSEEEEEESSSSTTSSHHHHHHHHHHHHHHTTSEEEEEEES--HHHHHHHHTCTS
T ss_pred ccccccccccccccccccccccccccchhccccccccccccccchhhhhhhhcccccccccccccccccccccccccccc
Confidence 12345689999999999999999999999999999999888 899999999999999999999999999999999 555
Q ss_pred CCceeeccccccccchhhhchHHHHHHhCCcEEecccCCcccCCCCCCCCCCCCccccccCCCCCCcchhhhHHHHHHHH
Q 018482 178 HPVTALQMEWSLWTRAIEDEIVPLCRELGIGIVPYSPLGRGFFGGKASVESLPASSILTWHPRFSGENIDKNKILYLRLQ 257 (355)
Q Consensus 178 ~~~~~~q~~~n~~~~~~~~~~~~~~~~~gi~v~a~spl~~G~L~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ 257 (355)
.+|+++|++||++++....+++++|+++||++++|+||++|+|+++......+...... .......+.+.
T Consensus 153 ~~~~~~q~~~n~~~~~~~~~l~~~~~~~gi~v~a~~~l~~G~l~~~~~~~~~~~~~~~~----------~~~~~~~~~l~ 222 (283)
T PF00248_consen 153 IPPDVVQINYNLLNRREEEGLLEFCREHGIGVIAYSPLAGGLLTGKYKSPPPPPSRASL----------RDAQELADALR 222 (283)
T ss_dssp S-ESEEEEE-BTTBHBGGHHHHHHHHHTT-EEEEESTTGGGCGGTTTTTTTTSTTTSGS----------STHGGGHHHHH
T ss_pred ccccccccccccccccccccccccccccccccccccccccCccccccccCCCccccccc----------chhhhhhhhhh
Confidence 78999999999997767789999999999999999999999999874332222111110 01345667899
Q ss_pred HHHHHcCCCHHHHHHHHHhhCCCCeeeecCCCCHHHHHHHHhccCCCCCHHHHHHHHhhc
Q 018482 258 KLAEKHECNPAQLALAWILHQGDDVAPIPGTTKIKNLDDNIGSLRVKLTNEDLDEISSVI 317 (355)
Q Consensus 258 ~la~~~~~s~~qlal~~~l~~~~v~~vIvG~~~~~~l~~nl~a~~~~Lt~ee~~~i~~~~ 317 (355)
++++++|+|++|+||+|+++++.+++||+|+++++|+++|+++++++||++|++.|+++.
T Consensus 223 ~~a~~~g~s~~q~al~~~l~~~~~~~~i~g~~~~~~l~en~~a~~~~L~~~~~~~i~~~~ 282 (283)
T PF00248_consen 223 ELAEEHGVSPAQLALRWVLSHPGVASVIVGASSPEHLEENLAALDFPLTEEELAEIDQIL 282 (283)
T ss_dssp HHHHHHTSSHHHHHHHHHHTSHTTEEEEEB-SSHHHHHHHHGGSSSG--HHHHHHHHTTH
T ss_pred hhhhhcccccchhhhhhhhhccccccccCCCCCHHHHHHHHHHhCCCCCHHHHHHHHhhh
Confidence 999999999999999999999999999999999999999999999999999999999874
No 11
>KOG1577 consensus Aldo/keto reductase family proteins [General function prediction only]
Probab=100.00 E-value=2.7e-55 Score=397.64 Aligned_cols=260 Identities=31% Similarity=0.488 Sum_probs=233.0
Q ss_pred ceecCCCCcccccceeccccCCCCCCCCCCHHHHHHHHHHHHHcCCCeEeCccCcCCCChhHHHHHHHHhc------CCC
Q 018482 11 RVKLGGQGFEVSKLGFGCMGLTGMYNDPVPDEVGISIIKHAFDQGITFFDTADVYGPNNANELLVGKALKQ------FPR 84 (355)
Q Consensus 11 ~~~lg~tg~~vs~lglGt~~~~~~~~~~~~~~~~~~~l~~A~~~Gi~~~DtA~~Yg~~g~sE~~lg~~L~~------~~R 84 (355)
+.+| ++|.++|.||||||+. +..++...++.|++.|+||||||..|+ +|+.+|++|++ .+|
T Consensus 6 ~~~L-n~G~~mP~iGlGTw~~--------~~~~~~~aV~~Al~~GYRHIDtA~~Y~----NE~evG~aik~~i~~~~v~R 72 (300)
T KOG1577|consen 6 TVKL-NNGFKMPIIGLGTWQS--------PPGQVAEAVKAAIKAGYRHIDTAHVYG----NEKEVGEAIKELLAEGGVKR 72 (300)
T ss_pred eEec-cCCCccceeeeEeccc--------ChhhHHHHHHHHHHhCcceeechhhhC----ChHHHHHHHHHHhhhCCcch
Confidence 6788 8999999999999962 678899999999999999999999999 79999999996 489
Q ss_pred CCEEEEeeccccccCCCCcccCCCHHHHHHHHHHHHHHcCCCcccEEEeccCCCC----------------CCHHHHHHH
Q 018482 85 EKVQLATKFGVVKFDVSGLVINGTPEYVRACCEASLKRLDVEYIDLYYQHRVDTT----------------VPIEDTMGE 148 (355)
Q Consensus 85 ~~~~i~tK~~~~~~~~~~~~~~~s~~~i~~~~~~sL~~L~~d~iDl~~lh~p~~~----------------~~~~~~~~~ 148 (355)
+++||+||+|+.. +.++.++.++++||++|++||+|+|+||||-.. .+..++|++
T Consensus 73 ediFiTSKlw~~~---------~~~~~v~~al~~sLk~L~ldYvDLyLiH~P~~~k~~~~~~~~~~~~~~~~~~~~tW~a 143 (300)
T KOG1577|consen 73 EDIFITSKLWPTD---------HAPELVEKALEKSLKKLQLDYVDLYLIHWPVAFKDSFPKDENGKVNYDDVDRIETWKA 143 (300)
T ss_pred hhheeeeccCccc---------cChhhHHHHHHHHHHHhChhhhheeeEecccccCCCCCcccccccccccchHHHHHHH
Confidence 9999999999764 578999999999999999999999999999543 346789999
Q ss_pred HHHHHHcCccceeecCCCCHHHHHHHhhc--CCceeeccccccccchhhhchHHHHHHhCCcEEecccCCcccCCCCCCC
Q 018482 149 LKKLVDEGKIKYIGLSEASPDTIRRAHAV--HPVTALQMEWSLWTRAIEDEIVPLCRELGIGIVPYSPLGRGFFGGKASV 226 (355)
Q Consensus 149 L~~l~~~Gkir~iGvS~~~~~~l~~~~~~--~~~~~~q~~~n~~~~~~~~~~~~~~~~~gi~v~a~spl~~G~L~g~~~~ 226 (355)
|++++++|+||+||||||+..+++++++. .+|.++|++++++.++ .++++||+++||.+.|||||+.+-- ++
T Consensus 144 mE~~~~~Gl~rsIGVSNF~~~~le~ll~~~ki~P~vnQvE~HP~~~Q--~~L~~fCk~~~I~v~AYSpLg~~~~-~~--- 217 (300)
T KOG1577|consen 144 MEKLVDEGLVRSIGVSNFNIKQLEELLNLAKIKPAVNQVECHPYLQQ--KKLVEFCKSKGIVVTAYSPLGSPGR-GS--- 217 (300)
T ss_pred HHHHHHcCCceEeeeecCCHHHHHHHHhcCCCCCccceeeccCCcCh--HHHHHHHhhCCcEEEEecCCCCCCC-cc---
Confidence 99999999999999999999999999887 6789999999998874 6799999999999999999986531 00
Q ss_pred CCCCCccccccCCCCCCcchhhhHHHHHHHHHHHHHcCCCHHHHHHHHHhhCCCCeeeecCCCCHHHHHHHHhccCCCCC
Q 018482 227 ESLPASSILTWHPRFSGENIDKNKILYLRLQKLAEKHECNPAQLALAWILHQGDDVAPIPGTTKIKNLDDNIGSLRVKLT 306 (355)
Q Consensus 227 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~la~~~~~s~~qlal~~~l~~~~v~~vIvG~~~~~~l~~nl~a~~~~Lt 306 (355)
...-.+.+.+||++||.|++|++|||++|++. +|||.+++++|+++|++++++.||
T Consensus 218 ----------------------~ll~~~~l~~iA~K~~kt~aQIlLrw~~q~g~--~vipKS~~~~Ri~eN~~vfdf~Lt 273 (300)
T KOG1577|consen 218 ----------------------DLLEDPVLKEIAKKYNKTPAQILLRWALQRGV--SVIPKSSNPERIKENFKVFDFELT 273 (300)
T ss_pred ----------------------ccccCHHHHHHHHHhCCCHHHHHHHHHHhCCc--EEEeccCCHHHHHHHHhhccccCC
Confidence 01112578999999999999999999999995 999999999999999999999999
Q ss_pred HHHHHHHHhhcCCCcc
Q 018482 307 NEDLDEISSVIPINEV 322 (355)
Q Consensus 307 ~ee~~~i~~~~~~~~~ 322 (355)
++||+.|+...+..|.
T Consensus 274 ~ed~~~i~~~~~~~r~ 289 (300)
T KOG1577|consen 274 EEDMKKLDSLNSNERY 289 (300)
T ss_pred HHHHHHHhhcccccee
Confidence 9999999988887664
No 12
>PRK11172 dkgB 2,5-diketo-D-gluconate reductase B; Provisional
Probab=100.00 E-value=3.7e-53 Score=390.63 Aligned_cols=246 Identities=29% Similarity=0.468 Sum_probs=220.3
Q ss_pred cccccceeccccCCCCCCCCCCHHHHHHHHHHHHHcCCCeEeCccCcCCCChhHHHHHHHHhc--CCCCCEEEEeecccc
Q 018482 19 FEVSKLGFGCMGLTGMYNDPVPDEVGISIIKHAFDQGITFFDTADVYGPNNANELLVGKALKQ--FPREKVQLATKFGVV 96 (355)
Q Consensus 19 ~~vs~lglGt~~~~~~~~~~~~~~~~~~~l~~A~~~Gi~~~DtA~~Yg~~g~sE~~lg~~L~~--~~R~~~~i~tK~~~~ 96 (355)
.+||.||||||+++ .+++.+++++|++.|||+||||+.|| +|+.+|++|++ .+|+++||+||++..
T Consensus 1 ~~vs~lglGt~~~~--------~~~~~~~i~~A~~~Gi~~~DTA~~Yg----~E~~lG~al~~~~~~R~~v~i~TK~~~~ 68 (267)
T PRK11172 1 MSIPAFGLGTFRLK--------DQVVIDSVKTALELGYRAIDTAQIYD----NEAAVGQAIAESGVPRDELFITTKIWID 68 (267)
T ss_pred CCCCCEeeEccccC--------hHHHHHHHHHHHHcCCCEEEccchhC----CHHHHHHHHHHcCCChhHeEEEEEeCCC
Confidence 36999999999753 36789999999999999999999998 69999999985 369999999998532
Q ss_pred ccCCCCcccCCCHHHHHHHHHHHHHHcCCCcccEEEeccCCCC--CCHHHHHHHHHHHHHcCccceeecCCCCHHHHHHH
Q 018482 97 KFDVSGLVINGTPEYVRACCEASLKRLDVEYIDLYYQHRVDTT--VPIEDTMGELKKLVDEGKIKYIGLSEASPDTIRRA 174 (355)
Q Consensus 97 ~~~~~~~~~~~s~~~i~~~~~~sL~~L~~d~iDl~~lh~p~~~--~~~~~~~~~L~~l~~~Gkir~iGvS~~~~~~l~~~ 174 (355)
..+++.+++++++||+|||+||||+|++|||++. .+.+++|++|++++++||||+||||||+.++++++
T Consensus 69 ---------~~~~~~~~~~~~~SL~rL~~d~iDl~~lH~~~~~~~~~~~~~~~~l~~l~~~Gkir~iGvSn~~~~~l~~~ 139 (267)
T PRK11172 69 ---------NLAKDKLIPSLKESLQKLRTDYVDLTLIHWPSPNDEVSVEEFMQALLEAKKQGLTREIGISNFTIALMKQA 139 (267)
T ss_pred ---------CCCHHHHHHHHHHHHHHhCCCceEEEEeCCCCCCCCCCHHHHHHHHHHHHHCCCCCEEEEccCCHHHHHHH
Confidence 3578999999999999999999999999999763 56789999999999999999999999999999888
Q ss_pred hhc---CCceeeccccccccchhhhchHHHHHHhCCcEEecccCCcccCCCCCCCCCCCCccccccCCCCCCcchhhhHH
Q 018482 175 HAV---HPVTALQMEWSLWTRAIEDEIVPLCRELGIGIVPYSPLGRGFFGGKASVESLPASSILTWHPRFSGENIDKNKI 251 (355)
Q Consensus 175 ~~~---~~~~~~q~~~n~~~~~~~~~~~~~~~~~gi~v~a~spl~~G~L~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 251 (355)
++. .+++++|++||++.+. .+++++|+++||++++|+||++|.+.+.
T Consensus 140 ~~~~~~~~~~~~Q~~~~~~~~~--~~ll~~~~~~gi~v~a~spl~~G~~~~~---------------------------- 189 (267)
T PRK11172 140 IAAVGAENIATNQIELSPYLQN--RKVVAFAKEHGIHVTSYMTLAYGKVLKD---------------------------- 189 (267)
T ss_pred HHhcCCCCCeEEeeecCCCCCc--HHHHHHHHHCCCEEEEECCCCCCcccCC----------------------------
Confidence 764 3689999999999874 5899999999999999999998864311
Q ss_pred HHHHHHHHHHHcCCCHHHHHHHHHhhCCCCeeeecCCCCHHHHHHHHhccCCCCCHHHHHHHHhhcCC
Q 018482 252 LYLRLQKLAEKHECNPAQLALAWILHQGDDVAPIPGTTKIKNLDDNIGSLRVKLTNEDLDEISSVIPI 319 (355)
Q Consensus 252 ~~~~l~~la~~~~~s~~qlal~~~l~~~~v~~vIvG~~~~~~l~~nl~a~~~~Lt~ee~~~i~~~~~~ 319 (355)
+.+.++|+++|+|++|+||+|+++++. ++|+|+++++|+++|+++++++||++|++.|+++.+.
T Consensus 190 --~~l~~~a~~~~~s~aqval~w~l~~~~--~~i~g~~~~~~l~~n~~~~~~~L~~~~~~~i~~~~~~ 253 (267)
T PRK11172 190 --PVIARIAAKHNATPAQVILAWAMQLGY--SVIPSSTKRENLASNLLAQDLQLDAEDMAAIAALDRN 253 (267)
T ss_pred --HHHHHHHHHhCCCHHHHHHHHHHhCCC--EeecCCCCHHHHHHHHhhcCCCcCHHHHHHHhhhccC
Confidence 358899999999999999999999974 7999999999999999999999999999999999764
No 13
>PRK14863 bifunctional regulator KidO; Provisional
Probab=100.00 E-value=9.7e-53 Score=391.86 Aligned_cols=270 Identities=21% Similarity=0.263 Sum_probs=229.1
Q ss_pred CcccccceeccccCCCC-------CCCCCCHHHHHHHHHHHHHcCCCeEeCccCcCCCChhHHHHHHHHhcCCCCCEEEE
Q 018482 18 GFEVSKLGFGCMGLTGM-------YNDPVPDEVGISIIKHAFDQGITFFDTADVYGPNNANELLVGKALKQFPREKVQLA 90 (355)
Q Consensus 18 g~~vs~lglGt~~~~~~-------~~~~~~~~~~~~~l~~A~~~Gi~~~DtA~~Yg~~g~sE~~lg~~L~~~~R~~~~i~ 90 (355)
+++||+||||||++|.. |+. ++.+++.++|+.|++.|||+||||+.||. ||+++|++|+..++.+++|+
T Consensus 2 ~~~vs~iglGt~~~g~~~~~~~~~~~~-~~~~ea~~~l~~A~~~Gin~~DTA~~YG~---SE~~lG~al~~~~~~~~~i~ 77 (292)
T PRK14863 2 SSPVSKLGLAAAQFGLDPGSSSAPRGR-TPEAEARDILNIAARAGLSVLDASGLFGR---AETVLGQLIPRPVPFRVTLS 77 (292)
T ss_pred CCcceeeeeeeeccCCCcccccCCCCC-CCHHHHHHHHHHHHHcCCCEEecchhhhh---HHHHHhhhhccCCceEeecc
Confidence 57899999999999864 443 58899999999999999999999999986 99999999985334678888
Q ss_pred eeccccccCCCCcccCCCHHHHHHHHHHHHHHcCCCcccEEEeccCCCC-CCH-HHHHHHHHHHHHcCccceeecCCCCH
Q 018482 91 TKFGVVKFDVSGLVINGTPEYVRACCEASLKRLDVEYIDLYYQHRVDTT-VPI-EDTMGELKKLVDEGKIKYIGLSEASP 168 (355)
Q Consensus 91 tK~~~~~~~~~~~~~~~s~~~i~~~~~~sL~~L~~d~iDl~~lh~p~~~-~~~-~~~~~~L~~l~~~Gkir~iGvS~~~~ 168 (355)
||.. +.+++.+++++++||+|||+||||+|++|+|+.. .+. +++|++|++|+++||||+||||||+.
T Consensus 78 tk~~-----------~~~~~~i~~~~e~SL~rLg~d~iDl~~lH~~~~~~~~~~~~~~~~l~~l~~~Gkir~iGvSn~~~ 146 (292)
T PRK14863 78 TVRA-----------DRGPDFVEAEARASLRRMGVERADAILVHSPTELFGPHGAALWERLQALKDQGLFAKIGVSAHAS 146 (292)
T ss_pred cccc-----------cccHHHHHHHHHHHHHHhCCCccCeEEEeCchhhcCcchHHHHHHHHHHHHcCCcceEeeeccCH
Confidence 8842 2468999999999999999999999999999763 333 68899999999999999999999999
Q ss_pred HHHHHHhhcCCceeeccccccccchhh-hchHHHHHHhCCcEEecccCCcccCCCCCCCCCCCCccccccCCCCCCcchh
Q 018482 169 DTIRRAHAVHPVTALQMEWSLWTRAIE-DEIVPLCRELGIGIVPYSPLGRGFFGGKASVESLPASSILTWHPRFSGENID 247 (355)
Q Consensus 169 ~~l~~~~~~~~~~~~q~~~n~~~~~~~-~~~~~~~~~~gi~v~a~spl~~G~L~g~~~~~~~~~~~~~~~~~~~~~~~~~ 247 (355)
+++..+....+|+++|++||++++..+ .+++++|+++||++++|+||++|+|++... ..+ ..+.
T Consensus 147 ~~~~~~~~~~~~~~~Q~~~n~l~~~~~~~~~l~~~~~~gi~v~a~spl~~G~L~~~~~--~~~-------------~~~~ 211 (292)
T PRK14863 147 DDPVGVARRFKPDILQAPASLLDQRLLADGSLQRIAGMGVEVHLRSIFLNGLLFLPPD--RVP-------------AQLK 211 (292)
T ss_pred HHHHHHHhcCCCCEEEecCCcccccccccchHHHHHhCCCEEEEechhhCccccCCcc--cCc-------------cchh
Confidence 999888877899999999999998654 469999999999999999999999975311 000 0011
Q ss_pred hhHHHHHHHHHHHHHcCCCHHHHHHHHHhhCCCCeeeecCCCCHHHHHHHHhccCCCCCHHHHHHHHhhc
Q 018482 248 KNKILYLRLQKLAEKHECNPAQLALAWILHQGDDVAPIPGTTKIKNLDDNIGSLRVKLTNEDLDEISSVI 317 (355)
Q Consensus 248 ~~~~~~~~l~~la~~~~~s~~qlal~~~l~~~~v~~vIvG~~~~~~l~~nl~a~~~~Lt~ee~~~i~~~~ 317 (355)
.....+..+.+++.++++|++|+||+|++++|.|+++|+|+++++||++|+++...++++..+++|..-.
T Consensus 212 ~~~~~~~~~~~~~~~~~~s~aqlalaw~l~~p~v~~~I~G~~~~~ql~~n~~a~~~~~~~~~~~~l~~~~ 281 (292)
T PRK14863 212 GASGRLSRVRRMIAEGRSDPLQAALGFALSRPEGSAVLVGVNSAAELSAVVAAASSPPPDLDWDDMAIDD 281 (292)
T ss_pred hhhHHHHHHHHHHHHcCCCHHHHHHHHHHhCCCCCeEEEecCCHHHHHHHHHHHhcCCCccchhhccCCh
Confidence 2234456777888889999999999999999999999999999999999999998889888877765433
No 14
>PRK11565 dkgA 2,5-diketo-D-gluconate reductase A; Provisional
Probab=100.00 E-value=1.9e-51 Score=380.55 Aligned_cols=256 Identities=28% Similarity=0.394 Sum_probs=225.1
Q ss_pred CceecCCCCcccccceeccccCCCCCCCCCCHHHHHHHHHHHHHcCCCeEeCccCcCCCChhHHHHHHHHhc--CCCCCE
Q 018482 10 PRVKLGGQGFEVSKLGFGCMGLTGMYNDPVPDEVGISIIKHAFDQGITFFDTADVYGPNNANELLVGKALKQ--FPREKV 87 (355)
Q Consensus 10 ~~~~lg~tg~~vs~lglGt~~~~~~~~~~~~~~~~~~~l~~A~~~Gi~~~DtA~~Yg~~g~sE~~lg~~L~~--~~R~~~ 87 (355)
++.+| ++|++||.||||||++ +.+++.++|++|++.|+|+||||+.|| +|+.+|++|+. .+|+++
T Consensus 5 ~~~~l-~~g~~v~~lglG~~~~--------~~~~~~~~l~~A~~~Gi~~~DTA~~Yg----~E~~lG~al~~~~~~R~~~ 71 (275)
T PRK11565 5 TVIKL-QDGNVMPQLGLGVWQA--------SNEEVITAIHKALEVGYRSIDTAAIYK----NEEGVGKALKEASVAREEL 71 (275)
T ss_pred ceEEc-CCCCccCCcceECccC--------CHHHHHHHHHHHHHhCCCEEEchhhhC----CHHHHHHHHHHcCCCHHHE
Confidence 34567 8999999999999974 458899999999999999999999998 79999999986 358999
Q ss_pred EEEeeccccccCCCCcccCCCHHHHHHHHHHHHHHcCCCcccEEEeccCCCCC-CHHHHHHHHHHHHHcCccceeecCCC
Q 018482 88 QLATKFGVVKFDVSGLVINGTPEYVRACCEASLKRLDVEYIDLYYQHRVDTTV-PIEDTMGELKKLVDEGKIKYIGLSEA 166 (355)
Q Consensus 88 ~i~tK~~~~~~~~~~~~~~~s~~~i~~~~~~sL~~L~~d~iDl~~lh~p~~~~-~~~~~~~~L~~l~~~Gkir~iGvS~~ 166 (355)
+|+||++. .+++.+++++++||++|++||||+|++|+|+... ...++|++|++|+++|+||+||||||
T Consensus 72 ~i~tK~~~-----------~~~~~~~~~~~~sL~rL~~d~iDl~~lH~p~~~~~~~~~~~~~l~~l~~~G~ir~iGvSn~ 140 (275)
T PRK11565 72 FITTKLWN-----------DDHKRPREALEESLKKLQLDYVDLYLMHWPVPAIDHYVEAWKGMIELQKEGLIKSIGVCNF 140 (275)
T ss_pred EEEEEecC-----------cchHHHHHHHHHHHHHhCCCceEEEEecCCCCCcCcHHHHHHHHHHHHHcCCeeEEeeccC
Confidence 99999863 2467899999999999999999999999998754 46899999999999999999999999
Q ss_pred CHHHHHHHhhcC--CceeeccccccccchhhhchHHHHHHhCCcEEecccCCcccCCCCCCCCCCCCccccccCCCCCCc
Q 018482 167 SPDTIRRAHAVH--PVTALQMEWSLWTRAIEDEIVPLCRELGIGIVPYSPLGRGFFGGKASVESLPASSILTWHPRFSGE 244 (355)
Q Consensus 167 ~~~~l~~~~~~~--~~~~~q~~~n~~~~~~~~~~~~~~~~~gi~v~a~spl~~G~L~g~~~~~~~~~~~~~~~~~~~~~~ 244 (355)
+.+++++++... +++++|++|+++.+. .+++++|+++||++++|+||++|. .+ .+.
T Consensus 141 ~~~~l~~~~~~~~v~~~~~Q~~~~~~~~~--~~~~~~~~~~~i~~~a~spl~~G~-~~-----------------~~~-- 198 (275)
T PRK11565 141 QIHHLQRLIDETGVTPVINQIELHPLMQQ--RQLHAWNATHKIQTESWSPLAQGG-KG-----------------VFD-- 198 (275)
T ss_pred CHHHHHHHHHhCCCCceeeeeecCCccch--HHHHHHHHHCCCEEEEEccCCCCC-cc-----------------ccc--
Confidence 999999887553 478999999998874 579999999999999999998763 00 010
Q ss_pred chhhhHHHHHHHHHHHHHcCCCHHHHHHHHHhhCCCCeeeecCCCCHHHHHHHHhccCCCCCHHHHHHHHhhcCCCc
Q 018482 245 NIDKNKILYLRLQKLAEKHECNPAQLALAWILHQGDDVAPIPGTTKIKNLDDNIGSLRVKLTNEDLDEISSVIPINE 321 (355)
Q Consensus 245 ~~~~~~~~~~~l~~la~~~~~s~~qlal~~~l~~~~v~~vIvG~~~~~~l~~nl~a~~~~Lt~ee~~~i~~~~~~~~ 321 (355)
.+.|.++|+++|+|++|+||+|+++++. ++|+|+++++|+++|+++++++||++|++.|+.+....+
T Consensus 199 --------~~~l~~ia~~~g~s~aq~aL~w~l~~~~--~~I~g~~~~~~i~~n~~a~~~~Ls~~~~~~i~~~~~~~~ 265 (275)
T PRK11565 199 --------QKVIRDLADKYGKTPAQIVIRWHLDSGL--VVIPKSVTPSRIAENFDVFDFRLDKDELGEIAKLDQGKR 265 (275)
T ss_pred --------CHHHHHHHHHhCCCHHHHHHHHHHcCCC--EeeCCCCCHHHHHHHHhccCCCcCHHHHHHHHhhcccCC
Confidence 1468899999999999999999999975 689999999999999999999999999999999987554
No 15
>COG4989 Predicted oxidoreductase [General function prediction only]
Probab=100.00 E-value=3.3e-51 Score=355.87 Aligned_cols=284 Identities=29% Similarity=0.422 Sum_probs=253.7
Q ss_pred CCceecCCCCcccccceeccccCCCCCCCCCCHHHHHHHHHHHHHcCCCeEeCccCcCCCChhHHHHHHHHhc--CCCCC
Q 018482 9 IPRVKLGGQGFEVSKLGFGCMGLTGMYNDPVPDEVGISIIKHAFDQGITFFDTADVYGPNNANELLVGKALKQ--FPREK 86 (355)
Q Consensus 9 m~~~~lg~tg~~vs~lglGt~~~~~~~~~~~~~~~~~~~l~~A~~~Gi~~~DtA~~Yg~~g~sE~~lg~~L~~--~~R~~ 86 (355)
|++.+||..++.+|++.+|+|++.. |+ ++..++...++.|++.||++||-|+-||+ +..|+++|.+|+- ..|++
T Consensus 1 m~rI~l~~~~~e~Sriv~G~wRl~d-~~--~~~~e~~~~Ie~~le~Gitt~DhADIYGg-y~cE~~fg~aL~l~p~lRek 76 (298)
T COG4989 1 MQRITLAPDGLEFSRIVLGYWRLND-WN--MSARELLSFIETALELGITTFDHADIYGG-YQCEALFGEALKLAPGLREK 76 (298)
T ss_pred CceEEecCCCccHHHHHHHHHhhhh-cc--CCHHHHHHHHHHHHHcCcccchhhhhcCC-ccHHHHHHHHHhcChhhhhh
Confidence 7889999999999999999999965 43 36689999999999999999999999998 9999999999987 46999
Q ss_pred EEEEeeccccccCC---CCcccCCCHHHHHHHHHHHHHHcCCCcccEEEeccCCCCCCHHHHHHHHHHHHHcCccceeec
Q 018482 87 VQLATKFGVVKFDV---SGLVINGTPEYVRACCEASLKRLDVEYIDLYYQHRVDTTVPIEDTMGELKKLVDEGKIKYIGL 163 (355)
Q Consensus 87 ~~i~tK~~~~~~~~---~~~~~~~s~~~i~~~~~~sL~~L~~d~iDl~~lh~p~~~~~~~~~~~~L~~l~~~Gkir~iGv 163 (355)
+.|+||+|...+.. ....++.|.++|..++++||++|+|||+|+++||+||+..+.+|+-+++..|+++||||++||
T Consensus 77 ieivsKCGI~~~s~~~~~~~hydts~~HI~~SVe~SL~~L~tDylD~LLiHRPDpLmd~eeVAeAf~~L~~sGKVr~fGV 156 (298)
T COG4989 77 IEIVSKCGIRLPSREEPRIGHYDTSKEHIIKSVEQSLINLKTDYLDLLLIHRPDPLMDAEEVAEAFTHLHKSGKVRHFGV 156 (298)
T ss_pred eEeeeccccccccccccccccccCcHHHHHHHHHHHHHHhccchhhhhhccCCcccCCHHHHHHHHHHHHhcCCeeeeec
Confidence 99999999765421 112467899999999999999999999999999999999999999999999999999999999
Q ss_pred CCCCHHHHHHHhhc--CCceeeccccccccchh-hhchHHHHHHhCCcEEecccCCcccCC-CCCCCCCCCCccccccCC
Q 018482 164 SEASPDTIRRAHAV--HPVTALQMEWSLWTRAI-EDEIVPLCRELGIGIVPYSPLGRGFFG-GKASVESLPASSILTWHP 239 (355)
Q Consensus 164 S~~~~~~l~~~~~~--~~~~~~q~~~n~~~~~~-~~~~~~~~~~~gi~v~a~spl~~G~L~-g~~~~~~~~~~~~~~~~~ 239 (355)
|||++.+++-+-.. .+++.+|++.|+++... ..+.+++|+++.|.+++||||++|-+. |.
T Consensus 157 SNf~p~Q~~LL~s~l~~~LvtNQlelS~~~~~~~~DGtLd~~q~~~v~pmaWSpl~gG~~F~g~---------------- 220 (298)
T COG4989 157 SNFNPAQFELLQSRLPFTLVTNQLELSPLHTPMLLDGTLDYCQQLRVRPMAWSPLGGGGLFLGD---------------- 220 (298)
T ss_pred CCCCHHHHHHHHHhccchhhhcceeeccccccccccchHHHHHHcCCCcccccccCCCccccCC----------------
Confidence 99999998777665 45799999999998753 378999999999999999999987443 32
Q ss_pred CCCCcchhhhHHHHHHHHHHHHHcC-CCHHHHHHHHHhhCCCCeeeecCCCCHHHHHHHHhccCCCCCHHHHHHHHhhcC
Q 018482 240 RFSGENIDKNKILYLRLQKLAEKHE-CNPAQLALAWILHQGDDVAPIPGTTKIKNLDDNIGSLRVKLTNEDLDEISSVIP 318 (355)
Q Consensus 240 ~~~~~~~~~~~~~~~~l~~la~~~~-~s~~qlal~~~l~~~~v~~vIvG~~~~~~l~~nl~a~~~~Lt~ee~~~i~~~~~ 318 (355)
+..+.....|..+|.++| +|.++++++|++.+|.-..+|+|+.+++++++.++++++.||.++|-+|.....
T Consensus 221 -------~~~q~l~~~l~~ia~e~ga~s~~~VaiAWllR~Pa~~~PiiGt~~~eRi~~a~~Al~~~LtRqqWf~Iy~Aa~ 293 (298)
T COG4989 221 -------DKFQRLRKVLDRIAEEYGAVSITAVAIAWLLRHPAKPQPIIGTGNLERIRAAIKALSLTLTRQQWFEIYTAAI 293 (298)
T ss_pred -------cchHHHHHHHHHHHHHhCcccHHHHHHHHHHhCcCcccceecCCCHHHHHHHHHHhhccccHHHHHHHHHHhc
Confidence 345667789999999999 799999999999999999999999999999999999999999999999987664
Q ss_pred C
Q 018482 319 I 319 (355)
Q Consensus 319 ~ 319 (355)
+
T Consensus 294 G 294 (298)
T COG4989 294 G 294 (298)
T ss_pred c
Confidence 3
No 16
>KOG1576 consensus Predicted oxidoreductase [Energy production and conversion]
Probab=100.00 E-value=1.1e-50 Score=354.97 Aligned_cols=312 Identities=24% Similarity=0.395 Sum_probs=260.0
Q ss_pred chhcCCCCceecCCCCcccccceeccccCCCCCCCCCCHHHHHHHHHHHHHcCCCeEeCccCcCCCChhHHHHHHHHhcC
Q 018482 3 EEQRIKIPRVKLGGQGFEVSKLGFGCMGLTGMYNDPVPDEVGISIIKHAFDQGITFFDTADVYGPNNANELLVGKALKQF 82 (355)
Q Consensus 3 ~~~~~~m~~~~lg~tg~~vs~lglGt~~~~~~~~~~~~~~~~~~~l~~A~~~Gi~~~DtA~~Yg~~g~sE~~lg~~L~~~ 82 (355)
+++++.|+||.+|.||++||+||||+..++..||. .+.++....+..|+..|||+|||++.||. +.+|..+|.++++.
T Consensus 16 e~~vrrmeyR~lg~tgl~VSk~~fGga~L~~~fgd-~~~e~~i~tv~eA~k~GINyiDTsp~Ygq-s~se~~lg~al~~v 93 (342)
T KOG1576|consen 16 EEKVRRMEYRQLGSTGLRVSKLGFGGAALGQLFGD-EDEEEGILTVIEAFKSGINYIDTSPYYGQ-SRSEEGLGLALKDV 93 (342)
T ss_pred HHHHHHHHHhhcCCCcceeeeeeecchhhhhhcCC-cchhhhHHHHHHHHHccccceecCcccCc-chhHHHHHHHHhhC
Confidence 57788999999999999999999999999998987 47777766667799999999999999998 99999999999999
Q ss_pred CCCCEEEEeeccccccCCCCcccCCCHHHHHHHHHHHHHHcCCCcccEEEeccCCCC----CCHHHHHHHHHHHHHcCcc
Q 018482 83 PREKVQLATKFGVVKFDVSGLVINGTPEYVRACCEASLKRLDVEYIDLYYQHRVDTT----VPIEDTMGELKKLVDEGKI 158 (355)
Q Consensus 83 ~R~~~~i~tK~~~~~~~~~~~~~~~s~~~i~~~~~~sL~~L~~d~iDl~~lh~p~~~----~~~~~~~~~L~~l~~~Gki 158 (355)
||+.+||+||++...-+. ...+|++++.+++++++||+||++||+|++++|..+.. ..+.|++.+|++++++||+
T Consensus 94 PR~aYyIaTKvgRy~ld~-~~~FdfsadkvreSv~rSlerLqldyvDilqiHDvefap~ld~vl~Etlp~Le~lk~~Gk~ 172 (342)
T KOG1576|consen 94 PREAYYIATKVGRYELDY-ANMFDFSADKVRESVKRSLERLQLDYVDILQIHDVEFAPNLDIVLNETLPALEELKQEGKI 172 (342)
T ss_pred ChhheeeeeeeeecccCc-cccccchHHHHHHHHHHHHHHhCCceeEEEEeecccccccccHHHHHHHHHHHHHHhcCce
Confidence 999999999999765332 22478999999999999999999999999999998643 4467999999999999999
Q ss_pred ceeecCCCCHHHHHHHhhcC--Cceeec--cccccccchhhhchHHHHHHhCCcEEecccCCcccCCCCCCCCCCCCccc
Q 018482 159 KYIGLSEASPDTIRRAHAVH--PVTALQ--MEWSLWTRAIEDEIVPLCRELGIGIVPYSPLGRGFFGGKASVESLPASSI 234 (355)
Q Consensus 159 r~iGvS~~~~~~l~~~~~~~--~~~~~q--~~~n~~~~~~~~~~~~~~~~~gi~v~a~spl~~G~L~g~~~~~~~~~~~~ 234 (355)
|+||++.++.+.+.++++.. .++++- .+|++.+... -..+++.+..|++|+..++++-|+|+...+++..|
T Consensus 173 RfiGitgypldvl~~~ae~~~G~~dvvlsY~ry~l~d~tL-l~~~~~~~sk~vgVi~AsalsmgLLt~~gp~~wHP---- 247 (342)
T KOG1576|consen 173 RFIGITGYPLDVLTECAERGKGRLDVVLSYCRYTLNDNTL-LRYLKRLKSKGVGVINASALSMGLLTNQGPPPWHP---- 247 (342)
T ss_pred eEeeecccchHHHHHHHhcCCCceeeehhhhhhccccHHH-HHHHHHHHhcCceEEehhhHHHHHhhcCCCCCCCC----
Confidence 99999999999999998763 356655 5677655433 57788899999999999999999999653322222
Q ss_pred cccCCCCCCcchhhhHHHHHHHHHHHHHcCCCHHHHHHHHHhhCCCCeeeecCCCCHHHHHHHHhccCCCCCHHHHHHHH
Q 018482 235 LTWHPRFSGENIDKNKILYLRLQKLAEKHECNPAQLALAWILHQGDDVAPIPGTTKIKNLDDNIGSLRVKLTNEDLDEIS 314 (355)
Q Consensus 235 ~~~~~~~~~~~~~~~~~~~~~l~~la~~~~~s~~qlal~~~l~~~~v~~vIvG~~~~~~l~~nl~a~~~~Lt~ee~~~i~ 314 (355)
..++..+...+-.++|++.|+.++.+|++|.++.++++++++|+++.++|+.|+++....||.-+-++..
T Consensus 248 ----------aS~Elk~~a~~aa~~Cq~rnv~l~kLA~~Yam~~~~~~~~lvGm~s~~~l~~nLdan~~~ls~~~~Qevl 317 (342)
T KOG1576|consen 248 ----------ASDELKEAAKAAAEYCQSRNVELGKLAMYYAMSLPGVSTVLVGMSSRQLLRINLDANFDRLSSKHEQEVL 317 (342)
T ss_pred ----------CCHHHHHHHHHHHHHHHHcCccHHHHHHHHHHccCCcceEEecCchHHHHHHHHHhhhccccchhHHHHH
Confidence 2456677778889999999999999999999999999999999999999999999876678763333333
Q ss_pred hhcCCCccCCCCCchhhhhhhhhcc
Q 018482 315 SVIPINEVAGDGVIGGLLRYSWKFA 339 (355)
Q Consensus 315 ~~~~~~~~~~~~~~~~~~~~~~~~~ 339 (355)
...+. +.++..++.|++-
T Consensus 318 ~~~r~-------~~~~~kn~~W~g~ 335 (342)
T KOG1576|consen 318 RILRE-------ILKETKNEEWEGG 335 (342)
T ss_pred HHHHH-------HhhhhccCCCCCC
Confidence 33322 3444456677653
No 17
>COG1453 Predicted oxidoreductases of the aldo/keto reductase family [General function prediction only]
Probab=100.00 E-value=8e-49 Score=358.92 Aligned_cols=273 Identities=29% Similarity=0.396 Sum_probs=242.9
Q ss_pred CCceecCCCCcccccceeccccCCCCCCCCCCHHHHHHHHHHHHHcCCCeEeCccCcCCCChhHHHHHHHHhcCCCCCEE
Q 018482 9 IPRVKLGGQGFEVSKLGFGCMGLTGMYNDPVPDEVGISIIKHAFDQGITFFDTADVYGPNNANELLVGKALKQFPREKVQ 88 (355)
Q Consensus 9 m~~~~lg~tg~~vs~lglGt~~~~~~~~~~~~~~~~~~~l~~A~~~Gi~~~DtA~~Yg~~g~sE~~lg~~L~~~~R~~~~ 88 (355)
|.||++|+||.++|.||||||++...|...+|.+.+.++|++|++.|||+||||..|.. |.||..+|++|++..|++++
T Consensus 1 Mlyr~~~k~g~~~s~lgfG~MRlp~~~~~~id~~~~~~~i~~aie~GiNyidTA~~Yh~-g~sE~~lgkaL~~~~Rekv~ 79 (391)
T COG1453 1 MLYRKFPKTGDELSILGFGCMRLPLKEQGSIDEENANETIDYAIEHGINYIDTAWPYHG-GESEEFLGKALKDGYREKVK 79 (391)
T ss_pred CchhhcCCCCcccceeccceeecccccCCCccHHHHHHHHHHHHHcCCceEeecccccC-CCchHHHHHHhhhcccceEE
Confidence 88999999999999999999999887766569999999999999999999999999976 77999999999998899999
Q ss_pred EEeeccccccCCCCcccCCCHHHHHHHHHHHHHHcCCCcccEEEeccCCCCCCHH-----HHHHHHHHHHHcCccceeec
Q 018482 89 LATKFGVVKFDVSGLVINGTPEYVRACCEASLKRLDVEYIDLYYQHRVDTTVPIE-----DTMGELKKLVDEGKIKYIGL 163 (355)
Q Consensus 89 i~tK~~~~~~~~~~~~~~~s~~~i~~~~~~sL~~L~~d~iDl~~lh~p~~~~~~~-----~~~~~L~~l~~~Gkir~iGv 163 (355)
++||+..+.. -+++.+++-++++|++|++||+|+|+||..+. ..++ ..++.+++++++||||++|+
T Consensus 80 LaTKlp~~~~--------~~~edm~r~fneqLekl~~Dy~D~yliH~l~~-e~~~k~~~~g~~df~~kak~eGkIr~~GF 150 (391)
T COG1453 80 LATKLPSWPV--------KDREDMERIFNEQLEKLGTDYIDYYLIHGLNT-ETWEKIERLGVFDFLEKAKAEGKIRNAGF 150 (391)
T ss_pred EEeecCCccc--------cCHHHHHHHHHHHHHHhCCchhhhhhhccccH-HHHHHHHccChHHHHHHHHhcCcEEEeee
Confidence 9999986542 46899999999999999999999999999977 3343 36999999999999999999
Q ss_pred CCC-CHHHHHHHhhcCCceeeccccccccchhh--hchHHHHHHhCCcEEecccCCcccCCCCCCCCCCCCccccccCCC
Q 018482 164 SEA-SPDTIRRAHAVHPVTALQMEWSLWTRAIE--DEIVPLCRELGIGIVPYSPLGRGFFGGKASVESLPASSILTWHPR 240 (355)
Q Consensus 164 S~~-~~~~l~~~~~~~~~~~~q~~~n~~~~~~~--~~~~~~~~~~gi~v~a~spl~~G~L~g~~~~~~~~~~~~~~~~~~ 240 (355)
|.| +.+.+.+++...+++++|++||.++..-. .+.+++|.++|++|+.++|+.+|-|..+. |
T Consensus 151 SfHgs~e~~~~iv~a~~~dfvqlq~ny~d~~n~~~~~~l~~A~~~~~gI~IMeP~~gG~l~~~v--------------P- 215 (391)
T COG1453 151 SFHGSTEVFKEIVDAYPWDFVQLQYNYIDQKNQAGTEGLKYAASKGLGIFIMEPLDGGGLLYNV--------------P- 215 (391)
T ss_pred cCCCCHHHHHHHHhcCCcceEEeeeeeeccchhcccHHHHHHHhCCCcEEEEeeCCCCCcccCC--------------C-
Confidence 999 56789999999999999999999998654 38899999999999999999998766321 1
Q ss_pred CCCcchhhhHHHHHHHHHHHHHcC--CCHHHHHHHHHhhCCCCeeeecCCCCHHHHHHHHhccCC--C-CCHHHHHHHHh
Q 018482 241 FSGENIDKNKILYLRLQKLAEKHE--CNPAQLALAWILHQGDDVAPIPGTTKIKNLDDNIGSLRV--K-LTNEDLDEISS 315 (355)
Q Consensus 241 ~~~~~~~~~~~~~~~l~~la~~~~--~s~~qlal~~~l~~~~v~~vIvG~~~~~~l~~nl~a~~~--~-Lt~ee~~~i~~ 315 (355)
++++++.++.+ .||+.+|+||++++|.|+++++|+++++|++||++..+. | ||++|++.|.+
T Consensus 216 -------------~~~~~l~~~~~~~~sP~~wa~R~~~shp~V~~vlsGm~~~~~l~enLk~~~~~~p~lte~e~~il~~ 282 (391)
T COG1453 216 -------------EKLEELCRPASPKRSPAEWALRYLLSHPEVTTVLSGMNTPEQLEENLKIASELEPSLTEEELQILEK 282 (391)
T ss_pred -------------HHHHHHHHhcCCCCCcHHHHHHHHhcCCCeEEEecCCCCHHHHHHHHHHHhhcCCccCHHHHHHHHH
Confidence 47788888865 689999999999999999999999999999999998753 4 99999988887
Q ss_pred hcCC
Q 018482 316 VIPI 319 (355)
Q Consensus 316 ~~~~ 319 (355)
+.+.
T Consensus 283 v~~~ 286 (391)
T COG1453 283 VEEI 286 (391)
T ss_pred HHHH
Confidence 7654
No 18
>KOG3023 consensus Glutamate-cysteine ligase regulatory subunit [Amino acid transport and metabolism]
Probab=97.75 E-value=5.4e-05 Score=66.73 Aligned_cols=71 Identities=18% Similarity=0.240 Sum_probs=59.2
Q ss_pred HHHHHHHHHHHHHcCccceeecCCCCHHHHHHHhhc--CCceeeccccccccchhhhchHHHHHHhCCcEEecc
Q 018482 142 IEDTMGELKKLVDEGKIKYIGLSEASPDTIRRAHAV--HPVTALQMEWSLWTRAIEDEIVPLCRELGIGIVPYS 213 (355)
Q Consensus 142 ~~~~~~~L~~l~~~Gkir~iGvS~~~~~~l~~~~~~--~~~~~~q~~~n~~~~~~~~~~~~~~~~~gi~v~a~s 213 (355)
+.+.|+.||+++.+|+|..||||.|+..++++++.. ..|.++|+...-...- -.++.+||.+|+|.+...+
T Consensus 155 lkplwk~LE~lv~~~kI~~lGvSDfda~qLe~Li~saqVvP~snqVnL~~cCvv-PpdLqafa~~hdiQLltHs 227 (285)
T KOG3023|consen 155 LKPLWKLLEELVGEGKIGTLGVSDFDANQLERLISSAQVVPESNQVNLGQCCVV-PPDLQAFADRHDIQLLTHS 227 (285)
T ss_pred HHHHHHHHHHHhccCceeeeeecccCHHHHHHHHhhhccccccceeeccccccC-CHHHHHHhhhcceeeeecC
Confidence 356899999999999999999999999999999887 4567788766544332 2689999999999997754
No 19
>cd03319 L-Ala-DL-Glu_epimerase L-Ala-D/L-Glu epimerase catalyzes the epimerization of L-Ala-D/L-Glu and other dipeptides. The genomic context and the substrate specificity of characterized members of this family from E.coli and B.subtilis indicates a possible role in the metabolism of the murein peptide of peptidoglycan, of which L-Ala-D-Glu is a component. L-Ala-D/L-Glu epimerase is a member of the enolase-superfamily, which is characterized by the presence of an enolate anion intermediate which is generated by abstraction of the alpha-proton of the carboxylate substrate by an active site residue and is stabilized by coordination to the essential Mg2+ ion.
Probab=93.39 E-value=3.6 Score=38.70 Aligned_cols=155 Identities=15% Similarity=0.090 Sum_probs=96.0
Q ss_pred CHHHHHHHHHHHHHcCCCeEeCccCcCCCChhHHHHHHHHhc-CCCCCEEEEeeccccccCCCCcccCCCHHHHHHHHHH
Q 018482 40 PDEVGISIIKHAFDQGITFFDTADVYGPNNANELLVGKALKQ-FPREKVQLATKFGVVKFDVSGLVINGTPEYVRACCEA 118 (355)
Q Consensus 40 ~~~~~~~~l~~A~~~Gi~~~DtA~~Yg~~g~sE~~lg~~L~~-~~R~~~~i~tK~~~~~~~~~~~~~~~s~~~i~~~~~~ 118 (355)
+.++..+.++.+.+.|++.|..-- |.+...+.-.=+++++ .+ ++-|.-+.... ++.+.. ..+-+
T Consensus 134 ~~~~~~~~~~~~~~~Gf~~iKik~--g~~~~~d~~~v~~lr~~~g--~~~l~vD~n~~----------~~~~~A-~~~~~ 198 (316)
T cd03319 134 TPEAMAAAAKKAAKRGFPLLKIKL--GGDLEDDIERIRAIREAAP--DARLRVDANQG----------WTPEEA-VELLR 198 (316)
T ss_pred CHHHHHHHHHHHHHcCCCEEEEEe--CCChhhHHHHHHHHHHhCC--CCeEEEeCCCC----------cCHHHH-HHHHH
Confidence 567777888888999999999742 3201122222233333 33 55566665322 344432 23334
Q ss_pred HHHHcCCCcccEEEeccCCCCCCHHHHHHHHHHHHHcCccc-eeecCCCCHHHHHHHhhcCCceeeccccccccch-hhh
Q 018482 119 SLKRLDVEYIDLYYQHRVDTTVPIEDTMGELKKLVDEGKIK-YIGLSEASPDTIRRAHAVHPVTALQMEWSLWTRA-IED 196 (355)
Q Consensus 119 sL~~L~~d~iDl~~lh~p~~~~~~~~~~~~L~~l~~~Gkir-~iGvS~~~~~~l~~~~~~~~~~~~q~~~n~~~~~-~~~ 196 (355)
.|+.+ ++.++..|-.. +-++.+.+|.+...+. ..|=+-++.+.++.+++....+++|+.-...-.- .-.
T Consensus 199 ~l~~~-----~l~~iEeP~~~----~d~~~~~~L~~~~~ipIa~~E~~~~~~~~~~~~~~~~~d~v~~~~~~~GGi~~~~ 269 (316)
T cd03319 199 ELAEL-----GVELIEQPVPA----GDDDGLAYLRDKSPLPIMADESCFSAADAARLAGGGAYDGINIKLMKTGGLTEAL 269 (316)
T ss_pred HHHhc-----CCCEEECCCCC----CCHHHHHHHHhcCCCCEEEeCCCCCHHHHHHHHhcCCCCEEEEeccccCCHHHHH
Confidence 44544 44455555332 2366777888876666 3455667899999999988899999876553211 126
Q ss_pred chHHHHHHhCCcEEecccCCcc
Q 018482 197 EIVPLCRELGIGIVPYSPLGRG 218 (355)
Q Consensus 197 ~~~~~~~~~gi~v~a~spl~~G 218 (355)
++..+|+++|+.++..+-+..+
T Consensus 270 ~~~~~a~~~gi~~~~~~~~~~~ 291 (316)
T cd03319 270 RIADLARAAGLKVMVGCMVESS 291 (316)
T ss_pred HHHHHHHHcCCCEEEECchhhH
Confidence 7899999999999987655433
No 20
>cd03315 MLE_like Muconate lactonizing enzyme (MLE) like subgroup of the enolase superfamily. Enzymes of this subgroup share three conserved carboxylate ligands for the essential divalent metal ion (usually Mg2+), two aspartates and a glutamate, and residues that can function as general acid/base catalysts, a Lys-X-Lys motif and another conserved lysine. Despite these conserved residues, the members of the MLE subgroup, like muconate lactonizing enzyme, o-succinylbenzoate synthase (OSBS) and N-acylamino acid racemase (NAAAR), catalyze different reactions.
Probab=85.77 E-value=28 Score=31.75 Aligned_cols=157 Identities=17% Similarity=0.181 Sum_probs=93.4
Q ss_pred CHHHHHHHHHHHHHcCCCeEeCccCcCCCChhHHHHHHHHhcCCCCCEEEEeeccccccCCCCcccCCCHHHHHHHHHHH
Q 018482 40 PDEVGISIIKHAFDQGITFFDTADVYGPNNANELLVGKALKQFPREKVQLATKFGVVKFDVSGLVINGTPEYVRACCEAS 119 (355)
Q Consensus 40 ~~~~~~~~l~~A~~~Gi~~~DtA~~Yg~~g~sE~~lg~~L~~~~R~~~~i~tK~~~~~~~~~~~~~~~s~~~i~~~~~~s 119 (355)
+.++..+.++.+.+.|++.|-.-- |.+...+.-.=+++++.-.+++.|.-... ..++.+...+-+ +.
T Consensus 85 ~~~~~~~~~~~~~~~G~~~~KiKv--g~~~~~d~~~v~~vr~~~g~~~~l~vDan----------~~~~~~~a~~~~-~~ 151 (265)
T cd03315 85 EPAEVAEEARRALEAGFRTFKLKV--GRDPARDVAVVAALREAVGDDAELRVDAN----------RGWTPKQAIRAL-RA 151 (265)
T ss_pred CHHHHHHHHHHHHHCCCCEEEEec--CCCHHHHHHHHHHHHHhcCCCCEEEEeCC----------CCcCHHHHHHHH-HH
Confidence 456677778888999999987532 21011122222334432223444433322 124444443333 33
Q ss_pred HHHcCCCcccEEEeccCCCCCCHHHHHHHHHHHHHcCccc-eeecCCCCHHHHHHHhhcCCceeeccccccccc-hhhhc
Q 018482 120 LKRLDVEYIDLYYQHRVDTTVPIEDTMGELKKLVDEGKIK-YIGLSEASPDTIRRAHAVHPVTALQMEWSLWTR-AIEDE 197 (355)
Q Consensus 120 L~~L~~d~iDl~~lh~p~~~~~~~~~~~~L~~l~~~Gkir-~iGvS~~~~~~l~~~~~~~~~~~~q~~~n~~~~-~~~~~ 197 (355)
|+.+ ++.++..|-+. +-++.+.+|++.-.+. ..|=+.++...+..+++...++++|+..+..-. .....
T Consensus 152 l~~~-----~i~~iEeP~~~----~d~~~~~~l~~~~~ipia~dE~~~~~~~~~~~i~~~~~d~v~~k~~~~GGi~~~~~ 222 (265)
T cd03315 152 LEDL-----GLDYVEQPLPA----DDLEGRAALARATDTPIMADESAFTPHDAFRELALGAADAVNIKTAKTGGLTKAQR 222 (265)
T ss_pred HHhc-----CCCEEECCCCc----ccHHHHHHHHhhCCCCEEECCCCCCHHHHHHHHHhCCCCEEEEecccccCHHHHHH
Confidence 3444 45556666432 2356677777765555 445566788899998888889999987665432 11267
Q ss_pred hHHHHHHhCCcEEecccCCcc
Q 018482 198 IVPLCRELGIGIVPYSPLGRG 218 (355)
Q Consensus 198 ~~~~~~~~gi~v~a~spl~~G 218 (355)
+...|+++|+.++..+.+.++
T Consensus 223 ~~~~A~~~gi~~~~~~~~~s~ 243 (265)
T cd03315 223 VLAVAEALGLPVMVGSMIESG 243 (265)
T ss_pred HHHHHHHcCCcEEecCccchH
Confidence 899999999999987666544
No 21
>cd03316 MR_like Mandelate racemase (MR)-like subfamily of the enolase superfamily. Enzymes of this subgroup share three conserved carboxylate ligands for the essential divalent metal ion (usually Mg2+), two aspartates and a glutamate, and conserved catalytic residues, a Lys-X-Lys motif and a conserved histidine-aspartate dyad. Members of the MR subgroup are mandelate racemase, D-glucarate/L-idarate dehydratase (GlucD), D-altronate/D-mannonate dehydratase , D-galactonate dehydratase (GalD) , D-gluconate dehydratase (GlcD), and L-rhamnonate dehydratase (RhamD).
Probab=84.12 E-value=40 Score=32.16 Aligned_cols=155 Identities=15% Similarity=0.098 Sum_probs=91.1
Q ss_pred CHHHHHHHHHHHHHcCCCeEeCc--cCcCCC--ChhHHHHHHHHhcCCCCCEEEEeeccccccCCCCcccCCCHHHHHHH
Q 018482 40 PDEVGISIIKHAFDQGITFFDTA--DVYGPN--NANELLVGKALKQFPREKVQLATKFGVVKFDVSGLVINGTPEYVRAC 115 (355)
Q Consensus 40 ~~~~~~~~l~~A~~~Gi~~~DtA--~~Yg~~--g~sE~~lg~~L~~~~R~~~~i~tK~~~~~~~~~~~~~~~s~~~i~~~ 115 (355)
+.++..+.++.+.+.|++.|-.- ..|..+ -.-+.-.=+++++.-.+++.|...... .++.+...
T Consensus 139 ~~~~~~~~a~~~~~~Gf~~~Kik~g~~~~~~~~~~~d~~~v~~ir~~~g~~~~l~vDaN~----------~~~~~~a~-- 206 (357)
T cd03316 139 SPEELAEEAKRAVAEGFTAVKLKVGGPDSGGEDLREDLARVRAVREAVGPDVDLMVDANG----------RWDLAEAI-- 206 (357)
T ss_pred CHHHHHHHHHHHHHcCCCEEEEcCCCCCcchHHHHHHHHHHHHHHHhhCCCCEEEEECCC----------CCCHHHHH--
Confidence 46777778888889999998753 222100 001112223333322234445444421 24444433
Q ss_pred HHHHHHHcCCCcccEEEeccCCCCCCHHHHHHHHHHHHHcCccc-eeecCCCCHHHHHHHhhcCCceeeccccccccch-
Q 018482 116 CEASLKRLDVEYIDLYYQHRVDTTVPIEDTMGELKKLVDEGKIK-YIGLSEASPDTIRRAHAVHPVTALQMEWSLWTRA- 193 (355)
Q Consensus 116 ~~~sL~~L~~d~iDl~~lh~p~~~~~~~~~~~~L~~l~~~Gkir-~iGvS~~~~~~l~~~~~~~~~~~~q~~~n~~~~~- 193 (355)
+.+++|. ..++.+++.|-.. +-++.+..|++.-.+. ..|=|.++.+.+.++++....+++|+.....-.-
T Consensus 207 --~~~~~l~--~~~i~~iEqP~~~----~~~~~~~~l~~~~~ipi~~dE~~~~~~~~~~~i~~~~~d~v~~k~~~~GGi~ 278 (357)
T cd03316 207 --RLARALE--EYDLFWFEEPVPP----DDLEGLARLRQATSVPIAAGENLYTRWEFRDLLEAGAVDIIQPDVTKVGGIT 278 (357)
T ss_pred --HHHHHhC--ccCCCeEcCCCCc----cCHHHHHHHHHhCCCCEEeccccccHHHHHHHHHhCCCCEEecCccccCCHH
Confidence 3334442 2355667766432 2466777787775555 4445667889999999888889999875543211
Q ss_pred hhhchHHHHHHhCCcEEeccc
Q 018482 194 IEDEIVPLCRELGIGIVPYSP 214 (355)
Q Consensus 194 ~~~~~~~~~~~~gi~v~a~sp 214 (355)
....+...|+++|+.++..+-
T Consensus 279 ~~~~i~~~a~~~g~~~~~~~~ 299 (357)
T cd03316 279 EAKKIAALAEAHGVRVAPHGA 299 (357)
T ss_pred HHHHHHHHHHHcCCeEeccCC
Confidence 126889999999999877653
No 22
>PRK07945 hypothetical protein; Provisional
Probab=83.80 E-value=25 Score=33.58 Aligned_cols=153 Identities=13% Similarity=0.091 Sum_probs=76.3
Q ss_pred HHHHHHHHHHHHcCCCeEeCccCcCC----CChhHHHHHHHHhcC-----CCCCEEEEeeccccccCCCCcccCCCHHHH
Q 018482 42 EVGISIIKHAFDQGITFFDTADVYGP----NNANELLVGKALKQF-----PREKVQLATKFGVVKFDVSGLVINGTPEYV 112 (355)
Q Consensus 42 ~~~~~~l~~A~~~Gi~~~DtA~~Yg~----~g~sE~~lg~~L~~~-----~R~~~~i~tK~~~~~~~~~~~~~~~s~~~i 112 (355)
....+++++|++.|+..+=.++|.-. .+.+...+-..+... +-.+ |--+.|.... ...+.+.+..
T Consensus 111 ~~~ee~v~~Ai~~Gl~~i~~TDH~p~~~~~~~~~~~~l~~y~~~i~~l~~ky~~--I~Il~GiE~d----~~~~g~~~~~ 184 (335)
T PRK07945 111 SPIEEMARTAAALGHEYCALTDHSPRLTVANGLSAERLRKQLDVVAELNEELAP--FRILTGIEVD----ILDDGSLDQE 184 (335)
T ss_pred CCHHHHHHHHHHCCCCEEEEeCCCCCccCCCCCCHHHHHHHHHHHHHHHHhcCC--ceEEEEeEec----ccCCCCcchh
Confidence 44789999999999998877766421 011222222222221 1112 2223332210 0001222222
Q ss_pred HHHHHHHHHHcCCCcccEEEeccCCCCCCHHHHHHHHHHHHHcCccceeecCC---------------CCHHHHHHHhhc
Q 018482 113 RACCEASLKRLDVEYIDLYYQHRVDTTVPIEDTMGELKKLVDEGKIKYIGLSE---------------ASPDTIRRAHAV 177 (355)
Q Consensus 113 ~~~~~~sL~~L~~d~iDl~~lh~p~~~~~~~~~~~~L~~l~~~Gkir~iGvS~---------------~~~~~l~~~~~~ 177 (355)
++.|+. .||+ +.-+|+... .+.++..+.|.+..+.+.+..||=-. +..+++.+++..
T Consensus 185 ----~~~l~~--~D~v-IgSvH~~~~-~~~~~~~~~l~~ai~~~~~dvlgH~D~~~~~~~~~~~~~~~~~~~~i~~a~~e 256 (335)
T PRK07945 185 ----PELLDR--LDVV-VASVHSKLR-MDAAAMTRRMLAAVANPHTDVLGHCTGRLVTGNRGTRPESKFDAEAVFAACRE 256 (335)
T ss_pred ----HHHHHh--CCEE-EEEeecCCC-CCHHHHHHHHHHHhcCCCCeEEecCchhhhccccCCCChhhcCHHHHHHHHHH
Confidence 333443 5776 788898643 23456678888888888877777321 122333333333
Q ss_pred CCceeeccccccccchhhhchHHHHHHhCCcE
Q 018482 178 HPVTALQMEWSLWTRAIEDEIVPLCRELGIGI 209 (355)
Q Consensus 178 ~~~~~~q~~~n~~~~~~~~~~~~~~~~~gi~v 209 (355)
.. ..+.+.-+.+...+...+++.|++.|+.+
T Consensus 257 ~g-~~lEINt~~~r~~P~~~il~~a~e~G~~v 287 (335)
T PRK07945 257 HG-TAVEINSRPERRDPPTRLLRLALDAGCLF 287 (335)
T ss_pred hC-CEEEEeCCCCCCCChHHHHHHHHHcCCeE
Confidence 22 22222222222223356788888888765
No 23
>PRK08609 hypothetical protein; Provisional
Probab=83.29 E-value=21 Score=36.77 Aligned_cols=150 Identities=13% Similarity=0.196 Sum_probs=82.1
Q ss_pred HHHHHHHHHHcCCCeEeCccCcCC----CChhHHHHHHHH------hc-CCCCCEEEEeeccccccCCCCcccCCCHHHH
Q 018482 44 GISIIKHAFDQGITFFDTADVYGP----NNANELLVGKAL------KQ-FPREKVQLATKFGVVKFDVSGLVINGTPEYV 112 (355)
Q Consensus 44 ~~~~l~~A~~~Gi~~~DtA~~Yg~----~g~sE~~lg~~L------~~-~~R~~~~i~tK~~~~~~~~~~~~~~~s~~~i 112 (355)
..++++.|.+.|+..|=.++|+.. .+.+...+-..+ ++ ...=++++..-+.... +.+
T Consensus 351 leemv~~A~~~Gl~~i~iTdH~~~~~~~~~~~~~~l~~~~~ei~~l~~~~~~i~Il~GiEv~i~~--------~g~---- 418 (570)
T PRK08609 351 IEEMVEACIAKGYEYMAITDHSQYLKVANGLTEERLLEQAEEIKALNEKYPEIDILSGIEMDILP--------DGS---- 418 (570)
T ss_pred HHHHHHHHHHCCCCEEEEeCCCCCccccCCCCHHHHHHHHHHHHHHHHhcCCCeEEEEEEEeecC--------Ccc----
Confidence 566999999999999998888621 022233333322 21 1111233333332211 111
Q ss_pred HHHHHHHHHHcCCCcccEEEeccCCCCCCHHHHHHHHHHHHHcCccceeecCC---------C--CHHHHHHHhhcCCce
Q 018482 113 RACCEASLKRLDVEYIDLYYQHRVDTTVPIEDTMGELKKLVDEGKIKYIGLSE---------A--SPDTIRRAHAVHPVT 181 (355)
Q Consensus 113 ~~~~~~sL~~L~~d~iDl~~lh~p~~~~~~~~~~~~L~~l~~~Gkir~iGvS~---------~--~~~~l~~~~~~~~~~ 181 (355)
..-.+..|+. .||+ +.-+|++.. .+.+++++.+.++.+.|.+.-||=-. + +.+.+.+++...+ .
T Consensus 419 ~d~~~~~L~~--~D~v-I~SvH~~~~-~~~~~~~~~l~~a~~~~~~dILaHpd~rli~~~~~~~~d~~~i~~~a~~~G-~ 493 (570)
T PRK08609 419 LDYDDEVLAE--LDYV-IAAIHSSFS-QSEEEIMKRLENACRNPYVRLIAHPTGRLIGRRDGYDVNIDQLIELAKETN-T 493 (570)
T ss_pred hhhcHHHHHh--hCEE-EEEeecCCC-CCHHHHHHHHHHHhcCCCceEEECCCccccccCCCchHHHHHHHHHHHHhC-C
Confidence 2222334554 4776 788887643 34577888899998888877665432 1 1133333333333 4
Q ss_pred eeccccccccchhhhchHHHHHHhCCcEE
Q 018482 182 ALQMEWSLWTRAIEDEIVPLCRELGIGIV 210 (355)
Q Consensus 182 ~~q~~~n~~~~~~~~~~~~~~~~~gi~v~ 210 (355)
++|+.-+.+.......++..|.+.|+.++
T Consensus 494 ~lEINa~~~r~~~~~~~~~~~~e~Gv~i~ 522 (570)
T PRK08609 494 ALELNANPNRLDLSAEHLKKAQEAGVKLA 522 (570)
T ss_pred EEEEcCCccccCccHHHHHHHHHcCCEEE
Confidence 55555554433334678888888888643
No 24
>PRK07535 methyltetrahydrofolate:corrinoid/iron-sulfur protein methyltransferase; Validated
Probab=82.29 E-value=32 Score=31.57 Aligned_cols=134 Identities=11% Similarity=0.171 Sum_probs=79.3
Q ss_pred CCHHHHHHHHHHHHHHcCCCcccEEEeccCCCCCCHHHHHHHHHHHHHcCccceeecCCCCHHHHHHHhhc--CCceeec
Q 018482 107 GTPEYVRACCEASLKRLDVEYIDLYYQHRVDTTVPIEDTMGELKKLVDEGKIKYIGLSEASPDTIRRAHAV--HPVTALQ 184 (355)
Q Consensus 107 ~s~~~i~~~~~~sL~~L~~d~iDl~~lh~p~~~~~~~~~~~~L~~l~~~Gkir~iGvS~~~~~~l~~~~~~--~~~~~~q 184 (355)
.+.+.+.+..++.. .-|-+.||+-.= +......+.+...++.+++.-.+ -|.+-+++++.++.+++. ...-++-
T Consensus 22 ~d~~~i~~~A~~~~-~~GAdiIDVg~~--~~~~eE~~r~~~~v~~l~~~~~~-plsIDT~~~~v~eaaL~~~~G~~iINs 97 (261)
T PRK07535 22 KDAAFIQKLALKQA-EAGADYLDVNAG--TAVEEEPETMEWLVETVQEVVDV-PLCIDSPNPAAIEAGLKVAKGPPLINS 97 (261)
T ss_pred CCHHHHHHHHHHHH-HCCCCEEEECCC--CCchhHHHHHHHHHHHHHHhCCC-CEEEeCCCHHHHHHHHHhCCCCCEEEe
Confidence 35566666666654 668899998743 22222234455566666554222 478889999999999987 4444433
Q ss_pred cccccccchhhhchHHHHHHhCCcEEecccCCcccCCCCCCCCCCCCccccccCCCCCCcchhhhHHHHHHHHHHHHHcC
Q 018482 185 MEWSLWTRAIEDEIVPLCRELGIGIVPYSPLGRGFFGGKASVESLPASSILTWHPRFSGENIDKNKILYLRLQKLAEKHE 264 (355)
Q Consensus 185 ~~~n~~~~~~~~~~~~~~~~~gi~v~a~spl~~G~L~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~la~~~~ 264 (355)
+.. .... ...+++.++++|..+++..--..|. | ...+.....+..+.+.+.++|
T Consensus 98 Is~--~~~~-~~~~~~l~~~~g~~vv~m~~~~~g~----------P-------------~t~~~~~~~l~~~v~~a~~~G 151 (261)
T PRK07535 98 VSA--EGEK-LEVVLPLVKKYNAPVVALTMDDTGI----------P-------------KDAEDRLAVAKELVEKADEYG 151 (261)
T ss_pred CCC--CCcc-CHHHHHHHHHhCCCEEEEecCCCCC----------C-------------CCHHHHHHHHHHHHHHHHHcC
Confidence 322 1111 2468899999999998765333332 1 011233455556666677777
Q ss_pred CCHHHH
Q 018482 265 CNPAQL 270 (355)
Q Consensus 265 ~s~~ql 270 (355)
+++.++
T Consensus 152 I~~~~I 157 (261)
T PRK07535 152 IPPEDI 157 (261)
T ss_pred CCHhHE
Confidence 755553
No 25
>cd03323 D-glucarate_dehydratase D-Glucarate dehydratase (GlucD) catalyzes the dehydration of both D-glucarate and L-idarate to form 5-keto-4-deoxy-D-glucarate (5-KDG) , the initial reaction of the catabolic pathway for (D)-glucarate. GlucD belongs to the enolase superfamily of enzymes, characterized by the presence of an enolate anion intermediate which is generated by abstraction of the alpha-proton of the carboxylate substrate by an active site residue and that is stabilized by coordination to the essential Mg2+ ion.
Probab=81.16 E-value=57 Score=31.85 Aligned_cols=151 Identities=17% Similarity=0.136 Sum_probs=91.0
Q ss_pred CHHHHHHHHHHHHH-cCCCeEeCccCcCCCChhHHHHHHHHhc-CCCCCEEEEeeccccccCCCCcccCCCHHHHHHHHH
Q 018482 40 PDEVGISIIKHAFD-QGITFFDTADVYGPNNANELLVGKALKQ-FPREKVQLATKFGVVKFDVSGLVINGTPEYVRACCE 117 (355)
Q Consensus 40 ~~~~~~~~l~~A~~-~Gi~~~DtA~~Yg~~g~sE~~lg~~L~~-~~R~~~~i~tK~~~~~~~~~~~~~~~s~~~i~~~~~ 117 (355)
+.++..+.++.+++ .|++.|=.--.-.+ ...+.-.=+++++ .+ ++.|..-.. ..++++.. .
T Consensus 168 ~~e~~~~~a~~~~~~~Gf~~~KiKvG~~~-~~~di~~v~avRea~~--~~~l~vDaN----------~~w~~~~A----~ 230 (395)
T cd03323 168 TPEGVVRLARAAIDRYGFKSFKLKGGVLP-GEEEIEAVKALAEAFP--GARLRLDPN----------GAWSLETA----I 230 (395)
T ss_pred CHHHHHHHHHHHHHhcCCcEEEEecCCCC-HHHHHHHHHHHHHhCC--CCcEEEeCC----------CCcCHHHH----H
Confidence 55666666677775 69998754321111 1111112233333 32 333322221 12444443 3
Q ss_pred HHHHHcCCCcccEEEeccCCCCCCHHHHHHHHHHHHHcCccc-eeecCCCCHHHHHHHhhcCCceeeccccccccch-hh
Q 018482 118 ASLKRLDVEYIDLYYQHRVDTTVPIEDTMGELKKLVDEGKIK-YIGLSEASPDTIRRAHAVHPVTALQMEWSLWTRA-IE 195 (355)
Q Consensus 118 ~sL~~L~~d~iDl~~lh~p~~~~~~~~~~~~L~~l~~~Gkir-~iGvS~~~~~~l~~~~~~~~~~~~q~~~n~~~~~-~~ 195 (355)
+.+++|. - ++.++..|-. -++.+.+|++...+. ..|-|.++..+++.+++...++++|+.....-.- .-
T Consensus 231 ~~~~~l~--~-~l~~iEeP~~------d~~~~~~L~~~~~~PIa~dEs~~~~~~~~~~i~~~avdil~~d~~~~GGit~~ 301 (395)
T cd03323 231 RLAKELE--G-VLAYLEDPCG------GREGMAEFRRATGLPLATNMIVTDFRQLGHAIQLNAVDIPLADHHFWGGMRGS 301 (395)
T ss_pred HHHHhcC--c-CCCEEECCCC------CHHHHHHHHHhcCCCEEcCCcccCHHHHHHHHHcCCCcEEeeccccccCHHHH
Confidence 4445553 2 6777777643 377888888876655 6677778889999999988899999876543211 12
Q ss_pred hchHHHHHHhCCcEEecccCC
Q 018482 196 DEIVPLCRELGIGIVPYSPLG 216 (355)
Q Consensus 196 ~~~~~~~~~~gi~v~a~spl~ 216 (355)
.++...|+.+|+.+...+...
T Consensus 302 ~kia~~A~~~gi~~~~h~~~e 322 (395)
T cd03323 302 VRVAQVCETWGLGWGMHSNNH 322 (395)
T ss_pred HHHHHHHHHcCCeEEEecCcc
Confidence 689999999999998877643
No 26
>cd04740 DHOD_1B_like Dihydroorotate dehydrogenase (DHOD) class 1B FMN-binding domain. DHOD catalyzes the oxidation of (S)-dihydroorotate to orotate. This is the fourth step and the only redox reaction in the de novo biosynthesis of UMP, the precursor of all pyrimidine nucleotides. DHOD requires FMN as co-factor. DHOD divides into class 1 and class 2 based on their amino acid sequences and cellular location. Members of class 1 are cytosolic enzymes and multimers while class 2 enzymes are membrane associated and monomeric. The class 1 enzymes can be further divided into subtypes 1A and 1B which are homodimers and heterotetrameric proteins, respectively.
Probab=79.81 E-value=51 Score=30.56 Aligned_cols=152 Identities=13% Similarity=0.103 Sum_probs=92.1
Q ss_pred CHHHHHHHHHHHHHcCCCeEeCc----------cCcCCCChhHHHHHHHHhcCCCC-CEEEEeeccccccCCCCcccCCC
Q 018482 40 PDEVGISIIKHAFDQGITFFDTA----------DVYGPNNANELLVGKALKQFPRE-KVQLATKFGVVKFDVSGLVINGT 108 (355)
Q Consensus 40 ~~~~~~~~l~~A~~~Gi~~~DtA----------~~Yg~~g~sE~~lg~~L~~~~R~-~~~i~tK~~~~~~~~~~~~~~~s 108 (355)
+.++..+..+.+.+.|+..||.- ..|+. +.+.+.+.++..++. ++-|..|+.+..
T Consensus 100 ~~~~~~~~a~~~~~~G~d~iElN~~cP~~~~~g~~~~~---~~~~~~eiv~~vr~~~~~Pv~vKl~~~~----------- 165 (296)
T cd04740 100 TVEEFVEVAEKLADAGADAIELNISCPNVKGGGMAFGT---DPEAVAEIVKAVKKATDVPVIVKLTPNV----------- 165 (296)
T ss_pred CHHHHHHHHHHHHHcCCCEEEEECCCCCCCCCcccccC---CHHHHHHHHHHHHhccCCCEEEEeCCCc-----------
Confidence 56777888888889999999862 23433 566777777664332 677888976421
Q ss_pred HHHHHHHHHHHHHHcCCCcccEEE------eccCC--C-----------CCCHHHHHHHHHHHHHcCccceeecCCC-CH
Q 018482 109 PEYVRACCEASLKRLDVEYIDLYY------QHRVD--T-----------TVPIEDTMGELKKLVDEGKIKYIGLSEA-SP 168 (355)
Q Consensus 109 ~~~i~~~~~~sL~~L~~d~iDl~~------lh~p~--~-----------~~~~~~~~~~L~~l~~~Gkir~iGvS~~-~~ 168 (355)
+.+ ..+-+.++..|.|.+++.- +|.-. + .....-.++.+.++++.=.+.-||+... +.
T Consensus 166 -~~~-~~~a~~~~~~G~d~i~~~nt~~g~~~~~~~~~~~~~~~~gg~sg~~~~~~~~~~i~~i~~~~~ipii~~GGI~~~ 243 (296)
T cd04740 166 -TDI-VEIARAAEEAGADGLTLINTLKGMAIDIETRKPILGNVTGGLSGPAIKPIALRMVYQVYKAVEIPIIGVGGIASG 243 (296)
T ss_pred -hhH-HHHHHHHHHcCCCEEEEECCCcccccccccCceeecCCcceecCcccchHHHHHHHHHHHhcCCCEEEECCCCCH
Confidence 122 2334557778877766531 11100 0 0001124677777777656888888875 78
Q ss_pred HHHHHHhhcCCceeecccccccc-----chhhhchHHHHHHhCCc
Q 018482 169 DTIRRAHAVHPVTALQMEWSLWT-----RAIEDEIVPLCRELGIG 208 (355)
Q Consensus 169 ~~l~~~~~~~~~~~~q~~~n~~~-----~~~~~~~~~~~~~~gi~ 208 (355)
+.+.+++... .+.+|+--.++. .....++-++.+++|..
T Consensus 244 ~da~~~l~~G-Ad~V~igra~l~~p~~~~~i~~~l~~~~~~~g~~ 287 (296)
T cd04740 244 EDALEFLMAG-ASAVQVGTANFVDPEAFKEIIEGLEAYLDEEGIK 287 (296)
T ss_pred HHHHHHHHcC-CCEEEEchhhhcChHHHHHHHHHHHHHHHHcCCC
Confidence 8888888744 688886333222 11236677777777743
No 27
>PF07021 MetW: Methionine biosynthesis protein MetW; InterPro: IPR010743 This family consists of several bacterial and one archaeal methionine biosynthesis MetW proteins. Biosynthesis of methionine from homoserine in Pseudomonas putida takes place in three steps. The first step is the acylation of homoserine to yield an acyl-L-homoserine. This reaction is catalysed by the products of the metXW genes and is equivalent to the first step in enterobacteria, Gram-positive bacteria and fungi, except that in these microorganisms the reaction is catalysed by a single polypeptide (the product of the metA gene in Escherichia coli and the met5 gene product in Neurospora crassa). In P. putida, as in Gram-positive bacteria and certain fungi, the second and third steps are a direct sulphydrylation that converts the O-acyl-L-homoserine into homocysteine and further methylation to yield methionine. The latter reaction can be mediated by either of the two methionine synthetases present in the cells [].
Probab=78.48 E-value=8.5 Score=33.56 Aligned_cols=150 Identities=18% Similarity=0.198 Sum_probs=93.6
Q ss_pred HHHHHHHHcCCCeEeCccCcCCCChhHHHHHHHHhcCCCCCEEEEeeccccccCCCCcccCCCHHHHHHHHHH-------
Q 018482 46 SIIKHAFDQGITFFDTADVYGPNNANELLVGKALKQFPREKVQLATKFGVVKFDVSGLVINGTPEYVRACCEA------- 118 (355)
Q Consensus 46 ~~l~~A~~~Gi~~~DtA~~Yg~~g~sE~~lg~~L~~~~R~~~~i~tK~~~~~~~~~~~~~~~s~~~i~~~~~~------- 118 (355)
+++..-++-|-+.+|-.-..| .+-+.|++.+ .+.. . ....+.+.+.+++.+
T Consensus 5 ~~I~~~I~pgsrVLDLGCGdG-------~LL~~L~~~k--~v~g---~----------GvEid~~~v~~cv~rGv~Viq~ 62 (193)
T PF07021_consen 5 QIIAEWIEPGSRVLDLGCGDG-------ELLAYLKDEK--QVDG---Y----------GVEIDPDNVAACVARGVSVIQG 62 (193)
T ss_pred HHHHHHcCCCCEEEecCCCch-------HHHHHHHHhc--CCeE---E----------EEecCHHHHHHHHHcCCCEEEC
Confidence 455666788888888764433 1445555311 1100 0 123455666666544
Q ss_pred ----HHHHcCCCcccEEEeccCCCCCCHHHHHHHHHHHHHcCccceeecCCCCHHHHHHHhhc--CCceeeccccccccc
Q 018482 119 ----SLKRLDVEYIDLYYQHRVDTTVPIEDTMGELKKLVDEGKIKYIGLSEASPDTIRRAHAV--HPVTALQMEWSLWTR 192 (355)
Q Consensus 119 ----sL~~L~~d~iDl~~lh~p~~~~~~~~~~~~L~~l~~~Gkir~iGvS~~~~~~l~~~~~~--~~~~~~q~~~n~~~~ 192 (355)
.|..+.-+.+|.+.+..-= ..+..-...|+++.+-|+---|++.||.-+..+..+-. .-|+.-.++|+.++.
T Consensus 63 Dld~gL~~f~d~sFD~VIlsqtL--Q~~~~P~~vL~EmlRVgr~~IVsFPNFg~W~~R~~l~~~GrmPvt~~lPy~WYdT 140 (193)
T PF07021_consen 63 DLDEGLADFPDQSFDYVILSQTL--QAVRRPDEVLEEMLRVGRRAIVSFPNFGHWRNRLQLLLRGRMPVTKALPYEWYDT 140 (193)
T ss_pred CHHHhHhhCCCCCccEEehHhHH--HhHhHHHHHHHHHHHhcCeEEEEecChHHHHHHHHHHhcCCCCCCCCCCCcccCC
Confidence 4444544555655554321 11233456688888999988899999987766554432 336777788887765
Q ss_pred hh-----hhchHHHHHHhCCcEEecccCCccc
Q 018482 193 AI-----EDEIVPLCRELGIGIVPYSPLGRGF 219 (355)
Q Consensus 193 ~~-----~~~~~~~~~~~gi~v~a~spl~~G~ 219 (355)
.- -.+..++|++.|+.+.-..++.++.
T Consensus 141 PNih~~Ti~DFe~lc~~~~i~I~~~~~~~~~~ 172 (193)
T PF07021_consen 141 PNIHLCTIKDFEDLCRELGIRIEERVFLDGGR 172 (193)
T ss_pred CCcccccHHHHHHHHHHCCCEEEEEEEEcCCC
Confidence 31 1788999999999999999998653
No 28
>PRK08392 hypothetical protein; Provisional
Probab=78.16 E-value=24 Score=31.11 Aligned_cols=151 Identities=14% Similarity=0.113 Sum_probs=73.5
Q ss_pred HHHHHHHHHHHcCCCeEeCccCcCCC--ChhHHHHHHHHhcCCCCCEEEEeeccccccCCCCcccCCCHHHHHHHHHHHH
Q 018482 43 VGISIIKHAFDQGITFFDTADVYGPN--NANELLVGKALKQFPREKVQLATKFGVVKFDVSGLVINGTPEYVRACCEASL 120 (355)
Q Consensus 43 ~~~~~l~~A~~~Gi~~~DtA~~Yg~~--g~sE~~lg~~L~~~~R~~~~i~tK~~~~~~~~~~~~~~~s~~~i~~~~~~sL 120 (355)
...++++.|.+.|++.|=.+++.-.. ..-+..+...-+-..+.++ .-..|... ++.++. ....++.+
T Consensus 15 ~~~e~v~~A~~~Gl~~i~iTdH~~~~~~~~~~~y~~~i~~l~~~~~i--~il~GiE~--------~~~~~~-~~~~~~~~ 83 (215)
T PRK08392 15 SVRDNIAEAERKGLRLVGISDHIHYFTPSKFNAYINEIRQWGEESEI--VVLAGIEA--------NITPNG-VDITDDFA 83 (215)
T ss_pred CHHHHHHHHHHcCCCEEEEccCCCccchhhHHHHHHHHHHHhhccCc--eEEEeEEe--------eecCCc-chhHHHHH
Confidence 46789999999999999777665310 0111222222111111222 22223211 011111 22333444
Q ss_pred HHcCCCcccEEEeccCCCCCCHHHHHHHHHHHHHcCccceeecCC-------CC-HHHHH---HHhhcCCceeecccccc
Q 018482 121 KRLDVEYIDLYYQHRVDTTVPIEDTMGELKKLVDEGKIKYIGLSE-------AS-PDTIR---RAHAVHPVTALQMEWSL 189 (355)
Q Consensus 121 ~~L~~d~iDl~~lh~p~~~~~~~~~~~~L~~l~~~Gkir~iGvS~-------~~-~~~l~---~~~~~~~~~~~q~~~n~ 189 (355)
++ .||+ +.-+|........++.++.+.++.+.+.+.-+|=-. .. .+.++ +++...+ . .++.|-
T Consensus 84 ~~--~D~v-I~SvH~~~~~~~~~~Y~~~~~~~~~~~~~dvlgH~d~~~~~~~~~~~~~~~~i~~~~~~~g-~--~lEiNt 157 (215)
T PRK08392 84 KK--LDYV-IASVHEWFGRPEHHEYIELVKLALMDENVDIIGHFGNSFPYIGYPSEEELKEILDLAEAYG-K--AFEISS 157 (215)
T ss_pred hh--CCEE-EEEeecCcCCcHHHHHHHHHHHHHhcCCCCEEeCCCccccCCCCchHHHHHHHHHHHHHhC-C--EEEEeC
Confidence 43 4666 777884332233456778888888888866665321 11 12222 2222222 1 112221
Q ss_pred ccchhhhchHHHHHHhCCcEE
Q 018482 190 WTRAIEDEIVPLCRELGIGIV 210 (355)
Q Consensus 190 ~~~~~~~~~~~~~~~~gi~v~ 210 (355)
..+.+...+++.|++.|+.++
T Consensus 158 ~~~~p~~~~l~~~~~~G~~~~ 178 (215)
T PRK08392 158 RYRVPDLEFIRECIKRGIKLT 178 (215)
T ss_pred CCCCCCHHHHHHHHHcCCEEE
Confidence 112233568889999987654
No 29
>TIGR02370 pyl_corrinoid methyltransferase cognate corrinoid proteins, Methanosarcina family. This model describes a subfamily of the B12 binding domain (pfam02607, pfam02310) proteins. Members of the seed alignment include corrinoid proteins specific to four different, mutally non-homologous enzymes of the genus Methanosarcina. Three of the four cognate enzymes (trimethylamine, dimethylamine, and monomethylamine methyltransferases) all have the unusual, ribosomally incorporated amino acid pyrrolysine at the active site. All act in systems in which a methyl group is transferred to the corrinoid protein to create methylcobalamin, from which the methyl group is later transferred elsewhere.
Probab=77.24 E-value=28 Score=30.40 Aligned_cols=145 Identities=12% Similarity=0.006 Sum_probs=85.1
Q ss_pred CHHHHHHHHHHHHHcCCCeEeCccCcCCCChhHHHHHHHHhcC----CCCCEEEEeeccccccCCCCcccCCCHHHHHHH
Q 018482 40 PDEVGISIIKHAFDQGITFFDTADVYGPNNANELLVGKALKQF----PREKVQLATKFGVVKFDVSGLVINGTPEYVRAC 115 (355)
Q Consensus 40 ~~~~~~~~l~~A~~~Gi~~~DtA~~Yg~~g~sE~~lg~~L~~~----~R~~~~i~tK~~~~~~~~~~~~~~~s~~~i~~~ 115 (355)
|.+++.++++.|++.|+...|. -+.++..++... .+.+++++-= ..+.+.+++.
T Consensus 10 d~~~~~~~v~~~l~~g~~~~~i---------~~~~l~p~m~~iG~~w~~gei~va~~-------------~~a~~~~~~~ 67 (197)
T TIGR02370 10 EEDDVVEGAQKALDAGIDPIEL---------IEKGLMAGMGVVGKLFEDGELFLPHV-------------MMSADAMLAG 67 (197)
T ss_pred CHHHHHHHHHHHHHcCCCHHHH---------HHHHHHHHHHHHHHHHcCCCccHHHH-------------HHHHHHHHHH
Confidence 7889999999999999877664 234444444431 2233333111 1234445555
Q ss_pred HHHHHHHcCCC----cccEEEeccCCCCCCHHHHHHHHHHHHHcCc-cceeecCCCCHHHHHHHhhcCCceeeccccccc
Q 018482 116 CEASLKRLDVE----YIDLYYQHRVDTTVPIEDTMGELKKLVDEGK-IKYIGLSEASPDTIRRAHAVHPVTALQMEWSLW 190 (355)
Q Consensus 116 ~~~sL~~L~~d----~iDl~~lh~p~~~~~~~~~~~~L~~l~~~Gk-ir~iGvS~~~~~~l~~~~~~~~~~~~q~~~n~~ 190 (355)
+......+... .---+++-.+..+.+--...=.-.-+...|. |.++|... +.+.+.+.+...+++++.+.+...
T Consensus 68 l~~l~~~~~~~~~~~~~~~vv~~t~~gd~H~lG~~~v~~~l~~~G~~vi~LG~~v-p~e~~v~~~~~~~pd~v~lS~~~~ 146 (197)
T TIGR02370 68 IKVLTPEMEKAVETEVLGKVVCGVAEGDVHDIGKNIVVTMLRANGFDVIDLGRDV-PIDTVVEKVKKEKPLMLTGSALMT 146 (197)
T ss_pred HHHHHHHhhccccCCCCCeEEEEeCCCchhHHHHHHHHHHHHhCCcEEEECCCCC-CHHHHHHHHHHcCCCEEEEccccc
Confidence 55555545321 1123444444444332222222234555675 88899766 778888888888889888877655
Q ss_pred cchhh-hchHHHHHHhCC
Q 018482 191 TRAIE-DEIVPLCRELGI 207 (355)
Q Consensus 191 ~~~~~-~~~~~~~~~~gi 207 (355)
..... .++++.+++.|.
T Consensus 147 ~~~~~~~~~i~~l~~~~~ 164 (197)
T TIGR02370 147 TTMYGQKDINDKLKEEGY 164 (197)
T ss_pred cCHHHHHHHHHHHHHcCC
Confidence 44322 778888888864
No 30
>cd00739 DHPS DHPS subgroup of Pterin binding enzymes. DHPS (dihydropteroate synthase), a functional homodimer, catalyzes the condensation of p-aminobenzoic acid (pABA) in the de novo biosynthesis of folate, which is an essential cofactor in both nucleic acid and protein biosynthesis. Prokaryotes (and some lower eukaryotes) must synthesize folate de novo, while higher eukaryotes are able to utilize dietary folate and therefore lack DHPS. Sulfonamide drugs, which are substrate analogs of pABA, target DHPS.
Probab=77.14 E-value=41 Score=30.78 Aligned_cols=101 Identities=17% Similarity=0.144 Sum_probs=63.4
Q ss_pred CCHHHHHHHHHHHHHHcCCCcccEEEe-ccCCCC-CCHHHHH----HHHHHHHHcCccceeecCCCCHHHHHHHhhcCCc
Q 018482 107 GTPEYVRACCEASLKRLDVEYIDLYYQ-HRVDTT-VPIEDTM----GELKKLVDEGKIKYIGLSEASPDTIRRAHAVHPV 180 (355)
Q Consensus 107 ~s~~~i~~~~~~sL~~L~~d~iDl~~l-h~p~~~-~~~~~~~----~~L~~l~~~Gkir~iGvS~~~~~~l~~~~~~~~~ 180 (355)
.+.+.+.+.+++.+ .-|-+.||+-.. -+|... .+.++-+ ..++.+++.-.+. |.+-+++++.++++++....
T Consensus 21 ~~~~~~~~~a~~~~-~~GAdiIDIG~~st~p~~~~i~~~~E~~rl~~~v~~i~~~~~~p-lSIDT~~~~v~e~al~~G~~ 98 (257)
T cd00739 21 LSLDKAVAHAEKMI-AEGADIIDIGGESTRPGADPVSVEEELERVIPVLEALRGELDVL-ISVDTFRAEVARAALEAGAD 98 (257)
T ss_pred CCHHHHHHHHHHHH-HCCCCEEEECCCcCCCCCCCCCHHHHHHHHHHHHHHHHhcCCCc-EEEeCCCHHHHHHHHHhCCC
Confidence 45666666666654 457888998632 245433 2333333 3455666553333 88889999999999987533
Q ss_pred eeeccccccccchhhhchHHHHHHhCCcEEecc
Q 018482 181 TALQMEWSLWTRAIEDEIVPLCRELGIGIVPYS 213 (355)
Q Consensus 181 ~~~q~~~n~~~~~~~~~~~~~~~~~gi~v~a~s 213 (355)
.++-+ +..... .++++.++++|..++++.
T Consensus 99 iINdi--sg~~~~--~~~~~l~~~~~~~vV~m~ 127 (257)
T cd00739 99 IINDV--SGGSDD--PAMLEVAAEYGAPLVLMH 127 (257)
T ss_pred EEEeC--CCCCCC--hHHHHHHHHcCCCEEEEC
Confidence 33333 332211 568899999999999943
No 31
>PRK00164 moaA molybdenum cofactor biosynthesis protein A; Reviewed
Probab=76.77 E-value=68 Score=30.24 Aligned_cols=152 Identities=12% Similarity=0.095 Sum_probs=82.2
Q ss_pred CCHHHHHHHHHHHHHcCCCeEeCccCcCCCChhHHHHHHHHhc---C-CCCCEEEEeeccccccCCCCcccCCCHHHHHH
Q 018482 39 VPDEVGISIIKHAFDQGITFFDTADVYGPNNANELLVGKALKQ---F-PREKVQLATKFGVVKFDVSGLVINGTPEYVRA 114 (355)
Q Consensus 39 ~~~~~~~~~l~~A~~~Gi~~~DtA~~Yg~~g~sE~~lg~~L~~---~-~R~~~~i~tK~~~~~~~~~~~~~~~s~~~i~~ 114 (355)
++.++..++++.+.+.|++.|.-.. |. .....-+-+.++. . .-.++.|+|-... +.+
T Consensus 49 ls~eei~~~i~~~~~~gi~~I~~tG--GE-Pll~~~l~~li~~i~~~~~~~~i~itTNG~l----------------l~~ 109 (331)
T PRK00164 49 LSLEEIERLVRAFVALGVRKVRLTG--GE-PLLRKDLEDIIAALAALPGIRDLALTTNGYL----------------LAR 109 (331)
T ss_pred CCHHHHHHHHHHHHHCCCCEEEEEC--CC-CcCccCHHHHHHHHHhcCCCceEEEEcCchh----------------HHH
Confidence 5789999999999999998887542 22 1111122333332 2 1235666665311 122
Q ss_pred HHHHHHHHcCCCcccEEEeccCCC--------CCCHHHHHHHHHHHHHcCc----cceeecCCCCHHHHHHHhh---cCC
Q 018482 115 CCEASLKRLDVEYIDLYYQHRVDT--------TVPIEDTMGELKKLVDEGK----IKYIGLSEASPDTIRRAHA---VHP 179 (355)
Q Consensus 115 ~~~~sL~~L~~d~iDl~~lh~p~~--------~~~~~~~~~~L~~l~~~Gk----ir~iGvS~~~~~~l~~~~~---~~~ 179 (355)
. -+.|...|++.+- +-||..++ ...+++++++++.+++.|. |..+.+...+.+++.++.+ ..+
T Consensus 110 ~-~~~L~~agl~~i~-ISlds~~~e~~~~i~~~~~~~~vl~~i~~~~~~g~~~v~i~~vv~~g~n~~ei~~l~~~~~~~g 187 (331)
T PRK00164 110 R-AAALKDAGLDRVN-VSLDSLDPERFKAITGRDRLDQVLAGIDAALAAGLTPVKVNAVLMKGVNDDEIPDLLEWAKDRG 187 (331)
T ss_pred H-HHHHHHcCCCEEE-EEeccCCHHHhccCCCCCCHHHHHHHHHHHHHCCCCcEEEEEEEECCCCHHHHHHHHHHHHhCC
Confidence 2 2334455655442 44455432 1347889999999999885 3344444445555554443 345
Q ss_pred ceeeccccccccch---------hhhchHHHHHHhCCcEEe
Q 018482 180 VTALQMEWSLWTRA---------IEDEIVPLCRELGIGIVP 211 (355)
Q Consensus 180 ~~~~q~~~n~~~~~---------~~~~~~~~~~~~gi~v~a 211 (355)
+.+.-++|.+.... ...++.+..+++|+.+..
T Consensus 188 v~v~~ie~~p~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~ 228 (331)
T PRK00164 188 IQLRFIELMPTGEGNEWFRKHHLSGAEIRARLAERGWTLQP 228 (331)
T ss_pred CeEEEEEeeECCCCcchhhhcCCCHHHHHHHHHhccCcccc
Confidence 55444444443321 015677777777665443
No 32
>PRK13958 N-(5'-phosphoribosyl)anthranilate isomerase; Provisional
Probab=75.54 E-value=8.1 Score=34.13 Aligned_cols=67 Identities=13% Similarity=0.189 Sum_probs=46.5
Q ss_pred HHHHcCCCcccEEEeccCCCCCCHHHHHHHHHHHHHcCccceeecC-CCCHHHHHHHhhcCCceeecccc
Q 018482 119 SLKRLDVEYIDLYYQHRVDTTVPIEDTMGELKKLVDEGKIKYIGLS-EASPDTIRRAHAVHPVTALQMEW 187 (355)
Q Consensus 119 sL~~L~~d~iDl~~lh~p~~~~~~~~~~~~L~~l~~~Gkir~iGvS-~~~~~~l~~~~~~~~~~~~q~~~ 187 (355)
.+..+|.|++=+++........+.+.+ ..+.+.. .+.++.+||. |.+++.+.++++..+++++|++-
T Consensus 16 ~~~~~GaD~iGfIf~~~SpR~V~~~~a-~~i~~~~-~~~~~~VgVf~~~~~~~i~~~~~~~~~d~vQLHG 83 (207)
T PRK13958 16 AASQLPIDAIGFIHYEKSKRHQTITQI-KKLASAV-PNHIDKVCVVVNPDLTTIEHILSNTSINTIQLHG 83 (207)
T ss_pred HHHHcCCCEEEEecCCCCcccCCHHHH-HHHHHhC-CCCCCEEEEEeCCCHHHHHHHHHhCCCCEEEECC
Confidence 456699999988755433333444443 3333222 2568889996 77899999999999999999964
No 33
>cd00308 enolase_like Enolase-superfamily, characterized by the presence of an enolate anion intermediate which is generated by abstraction of the alpha-proton of the carboxylate substrate by an active site residue and is stabilized by coordination to the essential Mg2+ ion. Enolase superfamily contains different enzymes, like enolases, glutarate-, fucanate- and galactonate dehydratases, o-succinylbenzoate synthase, N-acylamino acid racemase, L-alanine-DL-glutamate epimerase, mandelate racemase, muconate lactonizing enzyme and 3-methylaspartase.
Probab=75.38 E-value=23 Score=31.47 Aligned_cols=87 Identities=15% Similarity=0.078 Sum_probs=60.9
Q ss_pred ccEEEeccCCCCCCHHHHHHHHHHHHHcCccc-eeecCCCCHHHHHHHhhcCCceeeccccccccchh-hhchHHHHHHh
Q 018482 128 IDLYYQHRVDTTVPIEDTMGELKKLVDEGKIK-YIGLSEASPDTIRRAHAVHPVTALQMEWSLWTRAI-EDEIVPLCREL 205 (355)
Q Consensus 128 iDl~~lh~p~~~~~~~~~~~~L~~l~~~Gkir-~iGvS~~~~~~l~~~~~~~~~~~~q~~~n~~~~~~-~~~~~~~~~~~ 205 (355)
.++.++..|-+.. -++.+.+|.+...+. ..+=|.++.+.+..+++...++++|+..+..-.-. -.++..+|+++
T Consensus 120 ~~i~~iEeP~~~~----d~~~~~~L~~~~~~pIa~dEs~~~~~~~~~~~~~~~~d~~~~k~~~~GGi~~~~~i~~~a~~~ 195 (229)
T cd00308 120 YGLAWIEEPCAPD----DLEGYAALRRRTGIPIAADESVTTVDDALEALELGAVDILQIKPTRVGGLTESRRAADLAEAF 195 (229)
T ss_pred cCCCeEECCCCcc----CHHHHHHHHhhCCCCEEeCCCCCCHHHHHHHHHcCCCCEEecCccccCCHHHHHHHHHHHHHc
Confidence 5677777775432 256677777776655 34556677888878888788899998766543211 26789999999
Q ss_pred CCcEEecccCCcc
Q 018482 206 GIGIVPYSPLGRG 218 (355)
Q Consensus 206 gi~v~a~spl~~G 218 (355)
|+.++..+.+..|
T Consensus 196 gi~~~~~~~~~s~ 208 (229)
T cd00308 196 GIRVMVHGTLESS 208 (229)
T ss_pred CCEEeecCCCCCH
Confidence 9999998776544
No 34
>COG1140 NarY Nitrate reductase beta subunit [Energy production and conversion]
Probab=74.36 E-value=1.5 Score=41.70 Aligned_cols=56 Identities=16% Similarity=0.315 Sum_probs=39.7
Q ss_pred HHcCccceeecCCCCHHHHHHHhhcC-CceeeccccccccchhhhchHHHHHHhCCc
Q 018482 153 VDEGKIKYIGLSEASPDTIRRAHAVH-PVTALQMEWSLWTRAIEDEIVPLCRELGIG 208 (355)
Q Consensus 153 ~~~Gkir~iGvS~~~~~~l~~~~~~~-~~~~~q~~~n~~~~~~~~~~~~~~~~~gi~ 208 (355)
-=-|+|||+||--++++++.++.... .-+..+.+..++....+..+++.+++.||+
T Consensus 261 TCVGriRYlGVlLYDaDrv~eaAs~~~e~dly~~Q~~ifLDP~DP~Vi~~A~k~Gip 317 (513)
T COG1140 261 TCVGRIRYLGVLLYDADRVEEAASTENEKDLYERQLDVFLDPHDPAVIEQARKDGIP 317 (513)
T ss_pred hhhcceeeeeeeeecHHHHHHhhcCccHHHHHHHHHhhhcCCCCHHHHHHHHHcCCc
Confidence 34599999999999999999887653 234444445554444446778888888876
No 35
>cd03174 DRE_TIM_metallolyase DRE-TIM metallolyase superfamily. The DRE-TIM metallolyase superfamily includes 2-isopropylmalate synthase (IPMS), alpha-isopropylmalate synthase (LeuA), 3-hydroxy-3-methylglutaryl-CoA lyase, homocitrate synthase, citramalate synthase, 4-hydroxy-2-oxovalerate aldolase, re-citrate synthase, transcarboxylase 5S, pyruvate carboxylase, AksA, and FrbC. These members all share a conserved triose-phosphate isomerase (TIM) barrel domain consisting of a core beta(8)-alpha(8) motif with the eight parallel beta strands forming an enclosed barrel surrounded by eight alpha helices. The domain has a catalytic center containing a divalent cation-binding site formed by a cluster of invariant residues that cap the core of the barrel. In addition, the catalytic site includes three invariant residues - an aspartate (D), an arginine (R), and a glutamate (E) - which is the basis for the domain name "DRE-TIM".
Probab=74.26 E-value=16 Score=33.01 Aligned_cols=105 Identities=16% Similarity=0.123 Sum_probs=67.6
Q ss_pred CCHHHHHHHHHHHHHHcCCCcccEEEeccCCCCCCHHHHHHHHHHHHHcC-ccceeecCCCCHHHHHHHhhcCCceeecc
Q 018482 107 GTPEYVRACCEASLKRLDVEYIDLYYQHRVDTTVPIEDTMGELKKLVDEG-KIKYIGLSEASPDTIRRAHAVHPVTALQM 185 (355)
Q Consensus 107 ~s~~~i~~~~~~sL~~L~~d~iDl~~lh~p~~~~~~~~~~~~L~~l~~~G-kir~iGvS~~~~~~l~~~~~~~~~~~~q~ 185 (355)
++.+...+-+ +.|..+|+++|.+-..-.+...-..++.++.++.+.+.+ .++...++....+.++.+.+. +++.+++
T Consensus 16 ~s~e~~~~i~-~~L~~~GV~~IEvg~~~~~~~~p~~~~~~~~i~~l~~~~~~~~~~~l~~~~~~~i~~a~~~-g~~~i~i 93 (265)
T cd03174 16 FSTEDKLEIA-EALDEAGVDSIEVGSGASPKAVPQMEDDWEVLRAIRKLVPNVKLQALVRNREKGIERALEA-GVDEVRI 93 (265)
T ss_pred CCHHHHHHHH-HHHHHcCCCEEEeccCcCccccccCCCHHHHHHHHHhccCCcEEEEEccCchhhHHHHHhC-CcCEEEE
Confidence 4556555444 457789998888877655433222356788888898888 577767776556666666664 3566666
Q ss_pred cccccc--------c------hhhhchHHHHHHhCCcEEecc
Q 018482 186 EWSLWT--------R------AIEDEIVPLCRELGIGIVPYS 213 (355)
Q Consensus 186 ~~n~~~--------~------~~~~~~~~~~~~~gi~v~a~s 213 (355)
....-. + ..-...+++++++|+.+...-
T Consensus 94 ~~~~s~~~~~~~~~~~~~~~~~~~~~~i~~a~~~G~~v~~~~ 135 (265)
T cd03174 94 FDSASETHSRKNLNKSREEDLENAEEAIEAAKEAGLEVEGSL 135 (265)
T ss_pred EEecCHHHHHHHhCCCHHHHHHHHHHHHHHHHHCCCeEEEEE
Confidence 554431 1 111577888999998876644
No 36
>COG1748 LYS9 Saccharopine dehydrogenase and related proteins [Amino acid transport and metabolism]
Probab=72.83 E-value=17 Score=35.33 Aligned_cols=81 Identities=15% Similarity=0.192 Sum_probs=50.1
Q ss_pred HHHHHHHHHHHHcCCCeEeCccCcCCCChhHHHHHHHHhcCCCCCEEEEeeccccccCCCCcccCCCHHHHHHHHHHHHH
Q 018482 42 EVGISIIKHAFDQGITFFDTADVYGPNNANELLVGKALKQFPREKVQLATKFGVVKFDVSGLVINGTPEYVRACCEASLK 121 (355)
Q Consensus 42 ~~~~~~l~~A~~~Gi~~~DtA~~Yg~~g~sE~~lg~~L~~~~R~~~~i~tK~~~~~~~~~~~~~~~s~~~i~~~~~~sL~ 121 (355)
.....++++|++.|++++|||.+.. ...-+.... .+..+.+..-+|..+ ..+--.....+++--+
T Consensus 79 ~~~~~i~ka~i~~gv~yvDts~~~~----~~~~~~~~a---~~Agit~v~~~G~dP--------Gi~nv~a~~a~~~~~~ 143 (389)
T COG1748 79 FVDLTILKACIKTGVDYVDTSYYEE----PPWKLDEEA---KKAGITAVLGCGFDP--------GITNVLAAYAAKELFD 143 (389)
T ss_pred hhhHHHHHHHHHhCCCEEEcccCCc----hhhhhhHHH---HHcCeEEEcccCcCc--------chHHHHHHHHHHHhhc
Confidence 4456899999999999999996554 212222222 335566666666543 1233333333333333
Q ss_pred HcCCCcccEEEeccCCCC
Q 018482 122 RLDVEYIDLYYQHRVDTT 139 (355)
Q Consensus 122 ~L~~d~iDl~~lh~p~~~ 139 (355)
.++++|+|..+-|++.
T Consensus 144 --~i~si~iy~g~~g~~~ 159 (389)
T COG1748 144 --EIESIDIYVGGLGEHG 159 (389)
T ss_pred --cccEEEEEEecCCCCC
Confidence 5799999999999765
No 37
>cd00423 Pterin_binding Pterin binding enzymes. This family includes dihydropteroate synthase (DHPS) and cobalamin-dependent methyltransferases such as methyltetrahydrofolate, corrinoid iron-sulfur protein methyltransferase (MeTr) and methionine synthase (MetH). DHPS, a functional homodimer, catalyzes the condensation of p-aminobenzoic acid (pABA) in the de novo biosynthesis of folate, which is an essential cofactor in both nucleic acid and protein biosynthesis. Prokaryotes (and some lower eukaryotes) must synthesize folate de novo, while higher eukaryotes are able to utilize dietary folate and therefore lack DHPS. Sulfonamide drugs, which are substrate analogs of pABA, target DHPS. Cobalamin-dependent methyltransferases catalyze the transfer of a methyl group via a methyl- cob(III)amide intermediate. These include MeTr, a functional heterodimer, and the folate binding domain of MetH.
Probab=72.68 E-value=75 Score=28.93 Aligned_cols=102 Identities=17% Similarity=0.148 Sum_probs=65.9
Q ss_pred CCHHHHHHHHHHHHHHcCCCcccEEE-eccCCCC-CCH----HHHHHHHHHHHHcCccceeecCCCCHHHHHHHhhcCCc
Q 018482 107 GTPEYVRACCEASLKRLDVEYIDLYY-QHRVDTT-VPI----EDTMGELKKLVDEGKIKYIGLSEASPDTIRRAHAVHPV 180 (355)
Q Consensus 107 ~s~~~i~~~~~~sL~~L~~d~iDl~~-lh~p~~~-~~~----~~~~~~L~~l~~~Gkir~iGvS~~~~~~l~~~~~~~~~ 180 (355)
.+.+.+.+.+++.+ .-|-+.||+-. --+|+.. .+. +.+...++.+++.-.+ -|.+.+++++.++.+++....
T Consensus 21 ~~~~~~~~~a~~~~-~~GAdiIDvG~~st~p~~~~~~~~~E~~rl~~~v~~l~~~~~~-piSIDT~~~~v~~aaL~~g~~ 98 (258)
T cd00423 21 LSLDKALEHARRMV-EEGADIIDIGGESTRPGAEPVSVEEELERVIPVLRALAGEPDV-PISVDTFNAEVAEAALKAGAD 98 (258)
T ss_pred CCHHHHHHHHHHHH-HCCCCEEEECCCcCCCCCCcCCHHHHHHHHHHHHHHHHhcCCC-eEEEeCCcHHHHHHHHHhCCC
Confidence 46677777766665 56889999863 3345431 122 2345666666655233 389999999999999987643
Q ss_pred eeeccccccccchhhhchHHHHHHhCCcEEeccc
Q 018482 181 TALQMEWSLWTRAIEDEIVPLCRELGIGIVPYSP 214 (355)
Q Consensus 181 ~~~q~~~n~~~~~~~~~~~~~~~~~gi~v~a~sp 214 (355)
-++-+ +.... ..++++.++++|..++....
T Consensus 99 iINdi--s~~~~--~~~~~~l~~~~~~~vV~m~~ 128 (258)
T cd00423 99 IINDV--SGGRG--DPEMAPLAAEYGAPVVLMHM 128 (258)
T ss_pred EEEeC--CCCCC--ChHHHHHHHHcCCCEEEECc
Confidence 33333 22221 14688999999999988754
No 38
>COG4130 Predicted sugar epimerase [Carbohydrate transport and metabolism]
Probab=72.04 E-value=25 Score=31.22 Aligned_cols=81 Identities=11% Similarity=0.197 Sum_probs=56.6
Q ss_pred CCHHHHHHHhhcCCceeecc----ccccccchhh---hchHHHHHHhCCcEEecccCCcccCCCCCCCCCCCCccccccC
Q 018482 166 ASPDTIRRAHAVHPVTALQM----EWSLWTRAIE---DEIVPLCRELGIGIVPYSPLGRGFFGGKASVESLPASSILTWH 238 (355)
Q Consensus 166 ~~~~~l~~~~~~~~~~~~q~----~~n~~~~~~~---~~~~~~~~~~gi~v~a~spl~~G~L~g~~~~~~~~~~~~~~~~ 238 (355)
.++++++.+.+..++.++-+ +||.|+.... .++.++++.-|-.-+...|+..|...|. ..+
T Consensus 49 ~p~a~vka~Aek~Gl~IvSINAlypFn~wt~~~~a~a~~la~yA~acGA~aLvlcPlNd~s~~~~---------~vr--- 116 (272)
T COG4130 49 TPAAEVKALAEKAGLTIVSINALYPFNEWTEERVAEARGLADYAAACGAKALVLCPLNDGSWPGT---------AVR--- 116 (272)
T ss_pred CCHHHHHHHHHHcCcEEEEeeccccccccChHHHHHHHHHHHHHHhcCCceEEEEeccCCCCCCc---------ccc---
Confidence 36678888887777655543 6777775432 7899999999999999999987643222 111
Q ss_pred CCCCCcchhhhHHHHHHHHHHHHHcCC
Q 018482 239 PRFSGENIDKNKILYLRLQKLAEKHEC 265 (355)
Q Consensus 239 ~~~~~~~~~~~~~~~~~l~~la~~~~~ 265 (355)
.+.....++.|+.+-.++|+
T Consensus 117 -------~~~lv~AlkaLkpil~~~gi 136 (272)
T COG4130 117 -------REDLVEALKALKPILDEYGI 136 (272)
T ss_pred -------hHHHHHHHHHhhHHHHHhCc
Confidence 13456677788888888876
No 39
>PRK10558 alpha-dehydro-beta-deoxy-D-glucarate aldolase; Provisional
Probab=72.01 E-value=36 Score=31.12 Aligned_cols=68 Identities=12% Similarity=-0.002 Sum_probs=43.6
Q ss_pred HHHHHHHcCccceeec-CCCCHHHHHHHhhc--CCceeeccccccccchhhhchHHHHHHhCCcEEecccCC
Q 018482 148 ELKKLVDEGKIKYIGL-SEASPDTIRRAHAV--HPVTALQMEWSLWTRAIEDEIVPLCRELGIGIVPYSPLG 216 (355)
Q Consensus 148 ~L~~l~~~Gkir~iGv-S~~~~~~l~~~~~~--~~~~~~q~~~n~~~~~~~~~~~~~~~~~gi~v~a~spl~ 216 (355)
.|.+-.++|+. .+|+ .......+.+.+.. ..+.++-.++.++.......++..|+..|+..+..-|-.
T Consensus 9 ~lk~~l~~g~~-~~g~~~~~~sp~~~e~~a~~G~D~v~iD~EHg~~~~~~~~~~i~a~~~~g~~~lVRvp~~ 79 (256)
T PRK10558 9 KFKAALAAKQV-QIGCWSALANPITTEVLGLAGFDWLVLDGEHAPNDVSTFIPQLMALKGSASAPVVRVPTN 79 (256)
T ss_pred HHHHHHHcCCc-eEEEEEcCCCcHHHHHHHhcCCCEEEEccccCCCCHHHHHHHHHHHhhcCCCcEEECCCC
Confidence 35555566774 4443 22333344444444 455666678888877655788888999999988877664
No 40
>PRK13796 GTPase YqeH; Provisional
Probab=71.81 E-value=57 Score=31.48 Aligned_cols=133 Identities=13% Similarity=0.170 Sum_probs=85.0
Q ss_pred cceeccccCCCCCC----CCCCHHHHHHHHHHHHHcC---CCeEeCccCcCCCChhHHHHHHHHhcCCCCCEEEEeeccc
Q 018482 23 KLGFGCMGLTGMYN----DPVPDEVGISIIKHAFDQG---ITFFDTADVYGPNNANELLVGKALKQFPREKVQLATKFGV 95 (355)
Q Consensus 23 ~lglGt~~~~~~~~----~~~~~~~~~~~l~~A~~~G---i~~~DtA~~Yg~~g~sE~~lg~~L~~~~R~~~~i~tK~~~ 95 (355)
.+|==|.++-+ |+ ..++.++..++++..-+.- +-.+|..+.-++ -...+.+.+. .+.-++|.+|.-.
T Consensus 35 ~~C~RC~~l~h-y~~~~~~~~~~~~~~~~l~~i~~~~~lIv~VVD~~D~~~s---~~~~L~~~~~--~kpviLViNK~DL 108 (365)
T PRK13796 35 VYCQRCFRLKH-YNEIQDVSLTDDDFLKLLNGIGDSDALVVNVVDIFDFNGS---WIPGLHRFVG--NNPVLLVGNKADL 108 (365)
T ss_pred eEchhhhhhhc-cCcccCCCCCHHHHHHHHHhhcccCcEEEEEEECccCCCc---hhHHHHHHhC--CCCEEEEEEchhh
Confidence 34444555543 33 2256677777887776555 557887664443 3444555543 3456889999764
Q ss_pred cccCCCCcccCCCHHHHHHHHHHHHHHcCCCcccEEEeccCCCCCCHHHHHHHHHHHHHcCccceeecCCCCHH
Q 018482 96 VKFDVSGLVINGTPEYVRACCEASLKRLDVEYIDLYYQHRVDTTVPIEDTMGELKKLVDEGKIKYIGLSEASPD 169 (355)
Q Consensus 96 ~~~~~~~~~~~~s~~~i~~~~~~sL~~L~~d~iDl~~lh~p~~~~~~~~~~~~L~~l~~~Gkir~iGvS~~~~~ 169 (355)
.. .....+.+.+-++...+.+|....+++++..- ....++++++.+.++.+.+.+-.+|.+|-.-.
T Consensus 109 l~-------~~~~~~~i~~~l~~~~k~~g~~~~~v~~vSAk-~g~gI~eL~~~I~~~~~~~~v~vvG~~NvGKS 174 (365)
T PRK13796 109 LP-------KSVKKNKVKNWLRQEAKELGLRPVDVVLISAQ-KGHGIDELLEAIEKYREGRDVYVVGVTNVGKS 174 (365)
T ss_pred CC-------CccCHHHHHHHHHHHHHhcCCCcCcEEEEECC-CCCCHHHHHHHHHHhcCCCeEEEEcCCCCcHH
Confidence 32 12235566666666677777655577776543 33567889999988877788999999997553
No 41
>PRK10550 tRNA-dihydrouridine synthase C; Provisional
Probab=69.87 E-value=1e+02 Score=29.12 Aligned_cols=133 Identities=11% Similarity=0.012 Sum_probs=84.7
Q ss_pred CHHHHHHHHHHHHHcCCCeEeC---cc-----CcCCCC----hhHHHHHHHHhcCC---CCCEEEEeeccccccCCCCcc
Q 018482 40 PDEVGISIIKHAFDQGITFFDT---AD-----VYGPNN----ANELLVGKALKQFP---REKVQLATKFGVVKFDVSGLV 104 (355)
Q Consensus 40 ~~~~~~~~l~~A~~~Gi~~~Dt---A~-----~Yg~~g----~sE~~lg~~L~~~~---R~~~~i~tK~~~~~~~~~~~~ 104 (355)
+.++..+....+.+.|+..||- .+ .||. | ..-+.+.+.++..+ ..++-|+.|+...+.
T Consensus 73 ~p~~~~~aA~~~~~~g~d~IdiN~GCP~~~v~~~g~-Gs~Ll~~~~~~~eiv~avr~~~~~~~pVsvKiR~g~~------ 145 (312)
T PRK10550 73 YPQWLAENAARAVELGSWGVDLNCGCPSKTVNGSGG-GATLLKDPELIYQGAKAMREAVPAHLPVTVKVRLGWD------ 145 (312)
T ss_pred CHHHHHHHHHHHHHcCCCEEEEeCCCCchHHhcCCC-chHhhcCHHHHHHHHHHHHHhcCCCcceEEEEECCCC------
Confidence 6677777777888899999992 22 3553 3 23345555555421 124778888764321
Q ss_pred cCCCHHHHHHHHHHHHHHcCCCcccEEEeccCCCCCCHH-H--HHHHHHHHHHcCccceeecCCC-CHHHHHHHhhcCCc
Q 018482 105 INGTPEYVRACCEASLKRLDVEYIDLYYQHRVDTTVPIE-D--TMGELKKLVDEGKIKYIGLSEA-SPDTIRRAHAVHPV 180 (355)
Q Consensus 105 ~~~s~~~i~~~~~~sL~~L~~d~iDl~~lh~p~~~~~~~-~--~~~~L~~l~~~Gkir~iGvS~~-~~~~l~~~~~~~~~ 180 (355)
+.+. ...+-+.|+..| +|.+.||.-....... . -|+...++++.-.|.-||...- +++.+.++++..+.
T Consensus 146 ---~~~~-~~~~a~~l~~~G---vd~i~Vh~Rt~~~~y~g~~~~~~~i~~ik~~~~iPVi~nGdI~t~~da~~~l~~~g~ 218 (312)
T PRK10550 146 ---SGER-KFEIADAVQQAG---ATELVVHGRTKEDGYRAEHINWQAIGEIRQRLTIPVIANGEIWDWQSAQQCMAITGC 218 (312)
T ss_pred ---CchH-HHHHHHHHHhcC---CCEEEECCCCCccCCCCCcccHHHHHHHHhhcCCcEEEeCCcCCHHHHHHHHhccCC
Confidence 1122 235555577776 5777889654322111 1 3788888888777888888764 78888888887888
Q ss_pred eeeccc
Q 018482 181 TALQME 186 (355)
Q Consensus 181 ~~~q~~ 186 (355)
+.+++-
T Consensus 219 DgVmiG 224 (312)
T PRK10550 219 DAVMIG 224 (312)
T ss_pred CEEEEc
Confidence 888874
No 42
>PRK00208 thiG thiazole synthase; Reviewed
Probab=68.89 E-value=92 Score=28.33 Aligned_cols=105 Identities=14% Similarity=0.065 Sum_probs=69.2
Q ss_pred CCCHHHHHHHHHHHHHHcCCCcccEEEeccCCCC-CCHHHHHHHHHHHHHcCccceeecCCCCHHHHHHHhhcCCceeec
Q 018482 106 NGTPEYVRACCEASLKRLDVEYIDLYYQHRVDTT-VPIEDTMGELKKLVDEGKIKYIGLSEASPDTIRRAHAVHPVTALQ 184 (355)
Q Consensus 106 ~~s~~~i~~~~~~sL~~L~~d~iDl~~lh~p~~~-~~~~~~~~~L~~l~~~Gkir~iGvS~~~~~~l~~~~~~~~~~~~q 184 (355)
.++.+...+-.+-..+-++++.|-|=.|..+... -+..+++++.+.|+++|.+-. =+++-++...+.+.+. ++++++
T Consensus 72 ~~ta~eAv~~a~lare~~~~~~iKlEVi~d~~~llpd~~~tv~aa~~L~~~Gf~vl-pyc~~d~~~ak~l~~~-G~~~vm 149 (250)
T PRK00208 72 CRTAEEAVRTARLAREALGTNWIKLEVIGDDKTLLPDPIETLKAAEILVKEGFVVL-PYCTDDPVLAKRLEEA-GCAAVM 149 (250)
T ss_pred CCCHHHHHHHHHHHHHHhCCCeEEEEEecCCCCCCcCHHHHHHHHHHHHHCCCEEE-EEeCCCHHHHHHHHHc-CCCEeC
Confidence 4678888888888888899999988888766544 357899999999999998543 2555567777666665 445553
Q ss_pred cccccccc--hh-hhchHHHHHH-hCCcEEec
Q 018482 185 MEWSLWTR--AI-EDEIVPLCRE-LGIGIVPY 212 (355)
Q Consensus 185 ~~~n~~~~--~~-~~~~~~~~~~-~gi~v~a~ 212 (355)
.-=.+.-. .. ..++++...+ .++.|++-
T Consensus 150 Plg~pIGsg~gi~~~~~i~~i~e~~~vpVIve 181 (250)
T PRK00208 150 PLGAPIGSGLGLLNPYNLRIIIEQADVPVIVD 181 (250)
T ss_pred CCCcCCCCCCCCCCHHHHHHHHHhcCCeEEEe
Confidence 31111111 11 1345666666 47777663
No 43
>PF00682 HMGL-like: HMGL-like of this family is not conserved in other members. are a sub-families of this Pfam.; InterPro: IPR000891 Pyruvate carboxylase (6.4.1.1 from EC) (PC), a member of the biotin-dependent enzyme family, is involved in the gluconeogenesis by mediating the carboxylation of pyruvate to oxaloacetate. Biotin-dependent carboxylase enzymes perform a two step reaction. Enzyme-bound biotin is first carboxylated by bicarbonate and ATP and the carboxyl group temporarily bound to biotin is subsequently transferred to an acceptor substrate such as pyruvate []. PC has three functional domains: a biotin carboxylase (BC) domain, a carboxyltransferase (CT) domain which perform the second part of the reaction and a biotinyl domain [, ]. The mechanism by which the carboxyl group is transferred from the carboxybiotin to the pyruvate is not well understood. The pyruvate carboxyltransferase domain is also found in other pyruvate binding enzymes and acetyl-CoA dependent enzymes suggesting that this domain can be associated with different enzymatic activities. This domain is found towards the N-terminal region of various aldolase enzymes. This N-terminal TIM barrel domain [] interacts with the C-terminal domain. The C-terminal DmpG_comm domain (IPR012425 from INTERPRO) is thought to promote heterodimerisation with members of IPR003361 from INTERPRO to form a bifunctional aldolase-dehydrogenase []. ; GO: 0003824 catalytic activity; PDB: 3MP5_E 3MP3_E 2CW6_E 3MP4_D 3HBL_A 3HB9_C 3HO8_A 3BG5_C 1YDN_B 3RMJ_A ....
Probab=68.69 E-value=57 Score=29.03 Aligned_cols=150 Identities=14% Similarity=0.179 Sum_probs=83.3
Q ss_pred CCHHHHHHHHHHHHHcCCCeEeCc-cCcCCCChhHHHHHHHHhcCCCCCEEEEeeccccccCCCCcccCCCHHHHHHHHH
Q 018482 39 VPDEVGISIIKHAFDQGITFFDTA-DVYGPNNANELLVGKALKQFPREKVQLATKFGVVKFDVSGLVINGTPEYVRACCE 117 (355)
Q Consensus 39 ~~~~~~~~~l~~A~~~Gi~~~DtA-~~Yg~~g~sE~~lg~~L~~~~R~~~~i~tK~~~~~~~~~~~~~~~s~~~i~~~~~ 117 (355)
++.++..++++...+.||..|++. +..+ ....+.+.+..+..+...+ .+-+. .....++..++
T Consensus 11 ~~~~~k~~i~~~L~~~Gv~~iEvg~~~~~--~~~~~~v~~~~~~~~~~~~--~~~~~------------~~~~~i~~~~~ 74 (237)
T PF00682_consen 11 FSTEEKLEIAKALDEAGVDYIEVGFPFAS--EDDFEQVRRLREALPNARL--QALCR------------ANEEDIERAVE 74 (237)
T ss_dssp --HHHHHHHHHHHHHHTTSEEEEEHCTSS--HHHHHHHHHHHHHHHSSEE--EEEEE------------SCHHHHHHHHH
T ss_pred cCHHHHHHHHHHHHHhCCCEEEEcccccC--HHHHHHhhhhhhhhccccc--ceeee------------ehHHHHHHHHH
Confidence 477889999999999999999999 3333 2334445544443333222 22211 23555666665
Q ss_pred HHHHHcCCCcccEEEeccCC-----CCCC----HHHHHHHHHHHHHcCccceeecCC---CCHHHHHHHhhc---CCcee
Q 018482 118 ASLKRLDVEYIDLYYQHRVD-----TTVP----IEDTMGELKKLVDEGKIKYIGLSE---ASPDTIRRAHAV---HPVTA 182 (355)
Q Consensus 118 ~sL~~L~~d~iDl~~lh~p~-----~~~~----~~~~~~~L~~l~~~Gkir~iGvS~---~~~~~l~~~~~~---~~~~~ 182 (355)
.. ...|.+.+.++.--++. .... ++.+.+.++..++.|.--.+++.. ++.+.+.++.+. .+++.
T Consensus 75 ~~-~~~g~~~i~i~~~~s~~~~~~~~~~~~~~~~~~~~~~v~~ak~~g~~v~~~~~~~~~~~~~~~~~~~~~~~~~g~~~ 153 (237)
T PF00682_consen 75 AA-KEAGIDIIRIFISVSDLHIRKNLNKSREEALERIEEAVKYAKELGYEVAFGCEDASRTDPEELLELAEALAEAGADI 153 (237)
T ss_dssp HH-HHTTSSEEEEEEETSHHHHHHHTCSHHHHHHHHHHHHHHHHHHTTSEEEEEETTTGGSSHHHHHHHHHHHHHHT-SE
T ss_pred hh-HhccCCEEEecCcccHHHHHHhhcCCHHHHHHHHHHHHHHHHhcCCceEeCccccccccHHHHHHHHHHHHHcCCeE
Confidence 44 46787777766433320 0111 345566677777888877888744 455555554433 35555
Q ss_pred ecc--ccccccchhhhchHHHHHHh
Q 018482 183 LQM--EWSLWTRAIEDEIVPLCREL 205 (355)
Q Consensus 183 ~q~--~~n~~~~~~~~~~~~~~~~~ 205 (355)
+.+ .+..+.+..-.+++...+++
T Consensus 154 i~l~Dt~G~~~P~~v~~lv~~~~~~ 178 (237)
T PF00682_consen 154 IYLADTVGIMTPEDVAELVRALREA 178 (237)
T ss_dssp EEEEETTS-S-HHHHHHHHHHHHHH
T ss_pred EEeeCccCCcCHHHHHHHHHHHHHh
Confidence 555 34444443335677776664
No 44
>PRK01222 N-(5'-phosphoribosyl)anthranilate isomerase; Provisional
Probab=68.64 E-value=13 Score=32.93 Aligned_cols=68 Identities=19% Similarity=0.220 Sum_probs=45.5
Q ss_pred HHHHcCCCcccEEEeccCCCCCCHHHHHHHHHHHHHcCccceeecC-CCCHHHHHHHhhcCCceeeccccc
Q 018482 119 SLKRLDVEYIDLYYQHRVDTTVPIEDTMGELKKLVDEGKIKYIGLS-EASPDTIRRAHAVHPVTALQMEWS 188 (355)
Q Consensus 119 sL~~L~~d~iDl~~lh~p~~~~~~~~~~~~L~~l~~~Gkir~iGvS-~~~~~~l~~~~~~~~~~~~q~~~n 188 (355)
.+..+|.|++-+++.....+..+.+.+-+....+ .+.+..+||. +.+.+.+.++++..+++++|++-+
T Consensus 18 ~~~~~Gad~iGfI~~~~S~R~V~~~~a~~i~~~~--~~~i~~VgVf~~~~~~~i~~~~~~~~~d~vQLHg~ 86 (210)
T PRK01222 18 AAAELGADAIGFVFYPKSPRYVSPEQAAELAAAL--PPFVKVVGVFVNASDEEIDEIVETVPLDLLQLHGD 86 (210)
T ss_pred HHHHcCCCEEEEccCCCCCCcCCHHHHHHHHHhC--CCCCCEEEEEeCCCHHHHHHHHHhcCCCEEEECCC
Confidence 3456899999887544333334433333332222 2568899997 568899999999999999999643
No 45
>cd04731 HisF The cyclase subunit of imidazoleglycerol phosphate synthase (HisF). Imidazole glycerol phosphate synthase (IGPS) catalyzes the fifth step of histidine biosynthesis, the formation of the imidazole ring. IGPS converts N1-(5'-phosphoribulosyl)-formimino-5-aminoimidazole-4-carboxamide ribonucleotide (PRFAR) to imidazole glycerol phosphate (ImGP) and 5'-(5-aminoimidazole-4-carboxamide) ribonucleotide (AICAR). This conversion involves two tightly coupled reactions in distinct active sites of IGPS. The two catalytic domains can be fused, like in fungi and plants, or peformed by a heterodimer (HisH-glutaminase and HisF-cyclase), like in bacteria.
Probab=67.10 E-value=64 Score=28.88 Aligned_cols=145 Identities=12% Similarity=0.046 Sum_probs=72.6
Q ss_pred CHHHHHHHHHHHHHcCCCeEeCccCcCCCChhHHHHHHHHhcCCCCCEEEE--------------eeccccccCCCCccc
Q 018482 40 PDEVGISIIKHAFDQGITFFDTADVYGPNNANELLVGKALKQFPREKVQLA--------------TKFGVVKFDVSGLVI 105 (355)
Q Consensus 40 ~~~~~~~~l~~A~~~Gi~~~DtA~~Yg~~g~sE~~lg~~L~~~~R~~~~i~--------------tK~~~~~~~~~~~~~ 105 (355)
+.+++.+++. .|+..+..+...-. +-..+.++.+....+++.++ ++.|... .
T Consensus 82 s~~d~~~~l~----~G~~~v~ig~~~~~---~p~~~~~i~~~~~~~~i~~~ld~k~~~~~~~~v~~~~~~~~-------~ 147 (243)
T cd04731 82 SLEDARRLLR----AGADKVSINSAAVE---NPELIREIAKRFGSQCVVVSIDAKRRGDGGYEVYTHGGRKP-------T 147 (243)
T ss_pred CHHHHHHHHH----cCCceEEECchhhh---ChHHHHHHHHHcCCCCEEEEEEeeecCCCceEEEEcCCcee-------c
Confidence 5566655544 68888877655432 33455555554433344433 3323211 0
Q ss_pred CCCHHHHHHHHHHHHHHcCCCcccEEEeccCCCCCCHH-HHHHHHHHHHHcCccceeecCC-CCHHHHHHHhhcCCceee
Q 018482 106 NGTPEYVRACCEASLKRLDVEYIDLYYQHRVDTTVPIE-DTMGELKKLVDEGKIKYIGLSE-ASPDTIRRAHAVHPVTAL 183 (355)
Q Consensus 106 ~~s~~~i~~~~~~sL~~L~~d~iDl~~lh~p~~~~~~~-~~~~~L~~l~~~Gkir~iGvS~-~~~~~l~~~~~~~~~~~~ 183 (355)
..+. ..+-+.++.+|. |.+.+|..+...... --|+.++++++.-.+.-|..-. .+.+.+.++++..+.+.+
T Consensus 148 ~~~~----~~~~~~l~~~G~---d~i~v~~i~~~g~~~g~~~~~i~~i~~~~~~pvia~GGi~~~~di~~~l~~~g~dgv 220 (243)
T cd04731 148 GLDA----VEWAKEVEELGA---GEILLTSMDRDGTKKGYDLELIRAVSSAVNIPVIASGGAGKPEHFVEAFEEGGADAA 220 (243)
T ss_pred CCCH----HHHHHHHHHCCC---CEEEEeccCCCCCCCCCCHHHHHHHHhhCCCCEEEeCCCCCHHHHHHHHHhCCCCEE
Confidence 1111 122244456665 556666654321111 1356666666655566665554 367788888776666666
Q ss_pred ccccccccchh-hhchHHHHHHh
Q 018482 184 QMEWSLWTRAI-EDEIVPLCREL 205 (355)
Q Consensus 184 q~~~n~~~~~~-~~~~~~~~~~~ 205 (355)
++---+..... ..++..+|++|
T Consensus 221 ~vg~al~~~~~~~~~~~~~~~~~ 243 (243)
T cd04731 221 LAASIFHFGEYTIAELKEYLAER 243 (243)
T ss_pred EEeHHHHcCCCCHHHHHHHHhhC
Confidence 65322222211 14556666653
No 46
>cd03322 rpsA The starvation sensing protein RpsA from E.coli and its homologs are lactonizing enzymes whose putative targets are homoserine lactone (HSL)-derivative. They are part of the mandelate racemase (MR)-like subfamily of the enolase superfamily. Enzymes of this subfamily share three conserved carboxylate ligands for the essential divalent metal ion (usually Mg2+), two aspartates and a glutamate, and catalytic residues, a partially conserved Lys-X-Lys motif and a conserved histidine-aspartate dyad.
Probab=66.92 E-value=26 Score=33.65 Aligned_cols=71 Identities=10% Similarity=-0.032 Sum_probs=54.2
Q ss_pred HHHHHHHHHHcCccc-eeecCCCCHHHHHHHhhcCCceeeccccccccchh-hhchHHHHHHhCCcEEecccC
Q 018482 145 TMGELKKLVDEGKIK-YIGLSEASPDTIRRAHAVHPVTALQMEWSLWTRAI-EDEIVPLCRELGIGIVPYSPL 215 (355)
Q Consensus 145 ~~~~L~~l~~~Gkir-~iGvS~~~~~~l~~~~~~~~~~~~q~~~n~~~~~~-~~~~~~~~~~~gi~v~a~spl 215 (355)
-++.+.+|++...+. ..|=|.++...++.+++...++++|+.....-.-. -.++.+.|+++|+.+...+..
T Consensus 202 d~~~~~~L~~~~~~pia~gE~~~~~~~~~~~i~~~a~di~~~d~~~~GGit~~~~ia~~A~~~gi~~~~h~~~ 274 (361)
T cd03322 202 NQEAFRLIRQHTATPLAVGEVFNSIWDWQNLIQERLIDYIRTTVSHAGGITPARKIADLASLYGVRTGWHGPT 274 (361)
T ss_pred cHHHHHHHHhcCCCCEEeccCCcCHHHHHHHHHhCCCCEEecCccccCCHHHHHHHHHHHHHcCCeeeccCCC
Confidence 377788888887665 66778889999999998888999999766432111 268999999999999876443
No 47
>cd02930 DCR_FMN 2,4-dienoyl-CoA reductase (DCR) FMN-binding domain. DCR in E. coli is an iron-sulfur flavoenzyme which contains FMN, FAD, and a 4Fe-4S cluster. It is also a monomer, unlike that of its eukaryotic counterparts which form homotetramers and lack the flavin and iron-sulfur cofactors. Metabolism of unsaturated fatty acids requires auxiliary enzymes in addition to those used in b-oxidation. After a given number of cycles through the b-oxidation pathway, those unsaturated fatty acyl-CoAs with double bonds at even-numbered carbon positions contain 2-trans, 4-cis double bonds that can not be modified by enoyl-CoA hydratase. DCR utilizes NADPH to remove the C4-C5 double bond. DCR can catalyze the reduction of both natural fatty acids with cis double bonds, as well as substrates containing trans double bonds. The reaction is initiated by hybrid transfer from NADPH to FAD, which in turn transfers electrons, one at a time, to FMN via the 4Fe-4S cluster. The fully reduced FMN provi
Probab=66.58 E-value=1.2e+02 Score=28.93 Aligned_cols=140 Identities=16% Similarity=0.099 Sum_probs=75.1
Q ss_pred CCHHHHHHHHH-------HHHHcCCCeEeCcc-------------------CcCCCChhHH---HHHHHHhc---CCCCC
Q 018482 39 VPDEVGISIIK-------HAFDQGITFFDTAD-------------------VYGPNNANEL---LVGKALKQ---FPREK 86 (355)
Q Consensus 39 ~~~~~~~~~l~-------~A~~~Gi~~~DtA~-------------------~Yg~~g~sE~---~lg~~L~~---~~R~~ 86 (355)
++.++..++++ .|.++|+..|+--. .|| |.-|. ++-+.++. .-..+
T Consensus 127 mt~~eI~~i~~~f~~aA~~a~~aGfDgVeih~ahGyLl~qFlsp~~N~RtD~yG--GslenR~r~~~eiv~aIR~~vG~d 204 (353)
T cd02930 127 LSEEEIEQTIEDFARCAALAREAGYDGVEIMGSEGYLINQFLAPRTNKRTDEWG--GSFENRMRFPVEIVRAVRAAVGED 204 (353)
T ss_pred CCHHHHHHHHHHHHHHHHHHHHcCCCEEEEecccchHHHHhcCCccCCCcCccC--CCHHHHhHHHHHHHHHHHHHcCCC
Confidence 56666544443 44679999888532 234 33332 22222222 22356
Q ss_pred EEEEeeccccccCCCCcccCCCHHHHHHHHHHHHHHcCCCcccEE-Eecc-CCCC----CCHHHHHHHHHHHHHcCccce
Q 018482 87 VQLATKFGVVKFDVSGLVINGTPEYVRACCEASLKRLDVEYIDLY-YQHR-VDTT----VPIEDTMGELKKLVDEGKIKY 160 (355)
Q Consensus 87 ~~i~tK~~~~~~~~~~~~~~~s~~~i~~~~~~sL~~L~~d~iDl~-~lh~-p~~~----~~~~~~~~~L~~l~~~Gkir~ 160 (355)
+.|..|+....... ...+.+... .+-+.|+.+|+|++++- -.|. +... .+........+++++.=.+.-
T Consensus 205 ~~v~iRi~~~D~~~----~g~~~~e~~-~i~~~Le~~G~d~i~vs~g~~e~~~~~~~~~~~~~~~~~~~~~ik~~v~iPV 279 (353)
T cd02930 205 FIIIYRLSMLDLVE----GGSTWEEVV-ALAKALEAAGADILNTGIGWHEARVPTIATSVPRGAFAWATAKLKRAVDIPV 279 (353)
T ss_pred ceEEEEecccccCC----CCCCHHHHH-HHHHHHHHcCCCEEEeCCCcCCCCCccccccCCchhhHHHHHHHHHhCCCCE
Confidence 77888876532111 113444433 34455778888887762 2231 1111 111112344566666656666
Q ss_pred eecCC-CCHHHHHHHhhcCCceeecc
Q 018482 161 IGLSE-ASPDTIRRAHAVHPVTALQM 185 (355)
Q Consensus 161 iGvS~-~~~~~l~~~~~~~~~~~~q~ 185 (355)
+++-. ++++.++++++....+.+++
T Consensus 280 i~~G~i~~~~~a~~~i~~g~~D~V~~ 305 (353)
T cd02930 280 IASNRINTPEVAERLLADGDADMVSM 305 (353)
T ss_pred EEcCCCCCHHHHHHHHHCCCCChhHh
Confidence 66655 47788888888777777776
No 48
>COG1801 Uncharacterized conserved protein [Function unknown]
Probab=66.46 E-value=1e+02 Score=28.29 Aligned_cols=109 Identities=7% Similarity=-0.035 Sum_probs=67.2
Q ss_pred cceeccccCCCCCCCCCCHHHHHHHHHHHHHcCCCeEeCcc-CcCCCChhHHHHHHHHhcCCCCCEEEEeeccccccCCC
Q 018482 23 KLGFGCMGLTGMYNDPVPDEVGISIIKHAFDQGITFFDTAD-VYGPNNANELLVGKALKQFPREKVQLATKFGVVKFDVS 101 (355)
Q Consensus 23 ~lglGt~~~~~~~~~~~~~~~~~~~l~~A~~~Gi~~~DtA~-~Yg~~g~sE~~lg~~L~~~~R~~~~i~tK~~~~~~~~~ 101 (355)
.||+++|+...+-|....+....+--.+.+...+|.++.-. .|. -.+++.+-++.++ ..+++..+-|+.......
T Consensus 4 ~IG~sGW~~~~w~~~~yp~~~~~~~~L~~y~~~f~~VEiN~TFYa--~p~~~t~~~W~~~-~p~~FrFsvK~~~~iTH~- 79 (263)
T COG1801 4 YIGTSGWSYPDWEGLFYPEGLKKKEFLAYYASHFNTVEINSTFYA--PPSPETVLRWAEE-TPDDFRFSVKAPRAITHQ- 79 (263)
T ss_pred EEeecCCCcccccccccCcccchhhHHHHHhccCCEEEECCcccC--CCCHHHHHHHHHh-CCCCeEEEEEecccccch-
Confidence 56777777655334333333333333445566688877443 555 4567777888873 678999999997544221
Q ss_pred CcccCCCH---HHHHHHHHHHHHHcCCCcccEEEeccCCCCC
Q 018482 102 GLVINGTP---EYVRACCEASLKRLDVEYIDLYYQHRVDTTV 140 (355)
Q Consensus 102 ~~~~~~s~---~~i~~~~~~sL~~L~~d~iDl~~lh~p~~~~ 140 (355)
.... ..+.+.+.+-++.|| +.+..+++.-|....
T Consensus 80 ----~~l~~~~~~~~~~~~~~~~~L~-~klg~il~Q~Ppsf~ 116 (263)
T COG1801 80 ----RRLKECDFELWEFFLEPLAPLG-ERLGPILFQLPPSFK 116 (263)
T ss_pred ----hhhccchHHHHHHHHHHHHhhh-cccceEEEecCCccc
Confidence 1111 344555555566777 689999999886654
No 49
>PF03102 NeuB: NeuB family; InterPro: IPR013132 NeuB is the prokaryotic N-acetylneuraminic acid synthase (Neu5Ac). It catalyses the direct formation of Neu5Ac (the most common sialic acid) by condensation of phosphoenolpyruvate (PEP) and N-acetylmannosamine (ManNAc). This reaction has only been observed in prokaryotes; eukaryotes synthesise the 9-phosphate form, Neu5Ac-9-P, and utilise ManNAc-6-P instead of ManNAc. Such eukaryotic enzymes are not present in this family []. This family also contains SpsE spore coat polysaccharide biosynthesis proteins.; GO: 0016051 carbohydrate biosynthetic process; PDB: 3G8R_B 1XUU_A 1XUZ_A 3CM4_A 2ZDR_A 1VLI_A 2WQP_A.
Probab=66.32 E-value=36 Score=30.81 Aligned_cols=109 Identities=22% Similarity=0.237 Sum_probs=59.7
Q ss_pred CCHHHHHHHHHHHHHcCCCeEeCccCcCCCChhHHHHHHH-----------------Hhc--CCCCCEEEEeeccccccC
Q 018482 39 VPDEVGISIIKHAFDQGITFFDTADVYGPNNANELLVGKA-----------------LKQ--FPREKVQLATKFGVVKFD 99 (355)
Q Consensus 39 ~~~~~~~~~l~~A~~~Gi~~~DtA~~Yg~~g~sE~~lg~~-----------------L~~--~~R~~~~i~tK~~~~~~~ 99 (355)
++.++-.++.++|-+.||.||=|.-... +-.++-+. |+. .....++|+|=.
T Consensus 53 l~~e~~~~L~~~~~~~gi~f~stpfd~~----s~d~l~~~~~~~~KIaS~dl~n~~lL~~~A~tgkPvIlSTG~------ 122 (241)
T PF03102_consen 53 LSEEQHKELFEYCKELGIDFFSTPFDEE----SVDFLEELGVPAYKIASGDLTNLPLLEYIAKTGKPVILSTGM------ 122 (241)
T ss_dssp S-HHHHHHHHHHHHHTT-EEEEEE-SHH----HHHHHHHHT-SEEEE-GGGTT-HHHHHHHHTT-S-EEEE-TT------
T ss_pred CCHHHHHHHHHHHHHcCCEEEECCCCHH----HHHHHHHcCCCEEEeccccccCHHHHHHHHHhCCcEEEECCC------
Confidence 5788999999999999999998874332 22222111 000 123445555543
Q ss_pred CCCcccCCCHHHHHHHHHHHHHHcCCCcccEEEeccCCCC-CCHHH-HHHHHHHHHHc-CccceeecCCCCHH
Q 018482 100 VSGLVINGTPEYVRACCEASLKRLDVEYIDLYYQHRVDTT-VPIED-TMGELKKLVDE-GKIKYIGLSEASPD 169 (355)
Q Consensus 100 ~~~~~~~~s~~~i~~~~~~sL~~L~~d~iDl~~lh~p~~~-~~~~~-~~~~L~~l~~~-Gkir~iGvS~~~~~ 169 (355)
.+.+.|+++++...++- .-++.++|+.... .+.++ -+..+..|++. | --||+|.|+..
T Consensus 123 -------stl~EI~~Av~~~~~~~---~~~l~llHC~s~YP~~~e~~NL~~i~~L~~~f~--~~vG~SDHt~g 183 (241)
T PF03102_consen 123 -------STLEEIERAVEVLREAG---NEDLVLLHCVSSYPTPPEDVNLRVIPTLKERFG--VPVGYSDHTDG 183 (241)
T ss_dssp ---------HHHHHHHHHHHHHHC---T--EEEEEE-SSSS--GGG--TTHHHHHHHHST--SEEEEEE-SSS
T ss_pred -------CCHHHHHHHHHHHHhcC---CCCEEEEecCCCCCCChHHcChHHHHHHHHhcC--CCEEeCCCCCC
Confidence 24566777766653433 3589999998654 34443 36667777754 4 47799998764
No 50
>TIGR00190 thiC thiamine biosynthesis protein ThiC. The thiC ortholog is designated thiA in Bacillus subtilis.
Probab=66.03 E-value=1.4e+02 Score=29.25 Aligned_cols=144 Identities=15% Similarity=0.129 Sum_probs=88.9
Q ss_pred CHHHHHHHHHHHHHcCCCeE-eCccCcCCCChhHHHHHHHHhcCCCCCEEEEeecccccc--CCCCcccCCCHHHHHHHH
Q 018482 40 PDEVGISIIKHAFDQGITFF-DTADVYGPNNANELLVGKALKQFPREKVQLATKFGVVKF--DVSGLVINGTPEYVRACC 116 (355)
Q Consensus 40 ~~~~~~~~l~~A~~~Gi~~~-DtA~~Yg~~g~sE~~lg~~L~~~~R~~~~i~tK~~~~~~--~~~~~~~~~s~~~i~~~~ 116 (355)
+.++-.+-++.|++.|-..+ |-+ ..|+ -..+=-..|+. ..+-|-|= ..+.. ...+...+.+.+.+.+.+
T Consensus 75 d~~~E~~K~~~A~~~GADtiMDLS-tGgd---l~~iR~~il~~---s~vpvGTV-PiYqa~~~~~~~~~~mt~d~~~~~i 146 (423)
T TIGR00190 75 DIEEEVEKALIAIKYGADTVMDLS-TGGD---LDEIRKAILDA---VPVPVGTV-PIYQAAEKVHGAVEDMDEDDMFRAI 146 (423)
T ss_pred CHHHHHHHHHHHHHcCCCeEeecc-CCCC---HHHHHHHHHHc---CCCCccCc-cHHHHHHHhcCChhhCCHHHHHHHH
Confidence 45555566899999998744 544 3443 44444445543 12222221 10000 000123457888888888
Q ss_pred HHHHHHcCCCcccEEEeccCCCCCCHHHHHHHHHHHHHcCccceeecCCCCHHHHHHHhhcCCceeeccccccccchhhh
Q 018482 117 EASLKRLDVEYIDLYYQHRVDTTVPIEDTMGELKKLVDEGKIKYIGLSEASPDTIRRAHAVHPVTALQMEWSLWTRAIED 196 (355)
Q Consensus 117 ~~sL~~L~~d~iDl~~lh~p~~~~~~~~~~~~L~~l~~~Gkir~iGvS~~~~~~l~~~~~~~~~~~~q~~~n~~~~~~~~ 196 (355)
++..+ +=+|.+.||.- -+.+.++.++++|+ ..|+-+-....+..++... -.-|++.... .
T Consensus 147 e~qa~----dGVDfmTiH~G-------i~~~~~~~~~~~~R--~~giVSRGGs~~~~WM~~~------~~ENPlye~f-D 206 (423)
T TIGR00190 147 EKQAK----DGVDFMTIHAG-------VLLEYVERLKRSGR--ITGIVSRGGAILAAWMLHH------HKENPLYKNF-D 206 (423)
T ss_pred HHHHH----hCCCEEEEccc-------hhHHHHHHHHhCCC--ccCeecCcHHHHHHHHHHc------CCcCchHHHH-H
Confidence 88776 56789999983 34678888999985 6777776666666654432 2345666544 6
Q ss_pred chHHHHHHhCCcEEe
Q 018482 197 EIVPLCRELGIGIVP 211 (355)
Q Consensus 197 ~~~~~~~~~gi~v~a 211 (355)
++++.|+++++.+..
T Consensus 207 ~lLeI~~~yDVtlSL 221 (423)
T TIGR00190 207 YILEIAKEYDVTLSL 221 (423)
T ss_pred HHHHHHHHhCeeeec
Confidence 799999999999843
No 51
>PF05690 ThiG: Thiazole biosynthesis protein ThiG; InterPro: IPR008867 This family consists of several bacterial thiazole biosynthesis protein G sequences. ThiG, together with ThiF and ThiH, is proposed to be involved in the synthesis of 4-methyl-5-(b-hydroxyethyl)thiazole (THZ) which is an intermediate in the thiazole production pathway [].; GO: 0009228 thiamine biosynthetic process; PDB: 1WV2_B 1TYG_C 1XM3_B 2HTM_C 2YZR_C.
Probab=63.99 E-value=64 Score=29.14 Aligned_cols=114 Identities=17% Similarity=0.081 Sum_probs=63.0
Q ss_pred ccceeccccCCCCCCCCCCHHHHHHHHHHHH-HcCCCeEeCccCcCCCChhHHHHHHHHhcCCCCCEEEEeeccccccCC
Q 018482 22 SKLGFGCMGLTGMYNDPVPDEVGISIIKHAF-DQGITFFDTADVYGPNNANELLVGKALKQFPREKVQLATKFGVVKFDV 100 (355)
Q Consensus 22 s~lglGt~~~~~~~~~~~~~~~~~~~l~~A~-~~Gi~~~DtA~~Yg~~g~sE~~lg~~L~~~~R~~~~i~tK~~~~~~~~ 100 (355)
|+|-+||..+.+ .+++..|+ ..|-..+=.|=---+ -.....-..++.-.+++++.+--...
T Consensus 9 SRL~lGTgky~s-----------~~~m~~ai~aSg~evvTvalRR~~-~~~~~~~~~~~~~i~~~~~~lLPNTa------ 70 (247)
T PF05690_consen 9 SRLILGTGKYPS-----------PEVMREAIEASGAEVVTVALRRVN-LGSKPGGDNILDYIDRSGYTLLPNTA------ 70 (247)
T ss_dssp -SEEEE-STSSS-----------HHHHHHHHHHTT-SEEEEECCGST-TTS-TTCHHCCCCTTCCTSEEEEE-T------
T ss_pred cceEEecCCCCC-----------HHHHHHHHHHhCCcEEEEEEeccc-CCCCCCCccHHHHhcccCCEECCcCC------
Confidence 789999987643 45566666 477776665521111 00000011233334555554433221
Q ss_pred CCcccCCCHHHHHHHHHHHHHHcCCCcccEEEeccCCCCC-CHHHHHHHHHHHHHcCc
Q 018482 101 SGLVINGTPEYVRACCEASLKRLDVEYIDLYYQHRVDTTV-PIEDTMGELKKLVDEGK 157 (355)
Q Consensus 101 ~~~~~~~s~~~i~~~~~~sL~~L~~d~iDl~~lh~p~~~~-~~~~~~~~L~~l~~~Gk 157 (355)
..++.+...+..+-..+-++++.|-+=.+..+.... +..|++++-+.|+++|-
T Consensus 71 ----Gc~tA~EAv~~A~laRe~~~t~wIKLEVi~D~~~L~PD~~etl~Aae~Lv~eGF 124 (247)
T PF05690_consen 71 ----GCRTAEEAVRTARLAREAFGTNWIKLEVIGDDKTLLPDPIETLKAAEILVKEGF 124 (247)
T ss_dssp ----T-SSHHHHHHHHHHHHHTTS-SEEEE--BS-TTT--B-HHHHHHHHHHHHHTT-
T ss_pred ----CCCCHHHHHHHHHHHHHHcCCCeEEEEEeCCCCCcCCChhHHHHHHHHHHHCCC
Confidence 235778888888888999999998887776655433 45799999999999985
No 52
>cd04735 OYE_like_4_FMN Old yellow enzyme (OYE)-related FMN binding domain, group 4. Each monomer of OYE contains FMN as a non-covalently bound cofactor, uses NADPH as a reducing agent with oxygens, quinones, and alpha,beta-unsaturated aldehydes and ketones, and can act as electron acceptors in the catalytic reaction. Other members of OYE family include trimethylamine dehydrogenase, 2,4-dienoyl-CoA reductase, enoate reductase, pentaerythriol tetranitrate reductase, xenobiotic reductase, and morphinone reductase.
Probab=63.53 E-value=1.4e+02 Score=28.65 Aligned_cols=136 Identities=16% Similarity=0.197 Sum_probs=70.8
Q ss_pred CCCHHHHHHHHH-------HHHHcCCCeEeC-------------------ccCcCCCChhH---HHHHHHHhc----CCC
Q 018482 38 PVPDEVGISIIK-------HAFDQGITFFDT-------------------ADVYGPNNANE---LLVGKALKQ----FPR 84 (355)
Q Consensus 38 ~~~~~~~~~~l~-------~A~~~Gi~~~Dt-------------------A~~Yg~~g~sE---~~lg~~L~~----~~R 84 (355)
.++.++..++++ .|.++|+..|+- .+.|| |.-| +++-+.++. ...
T Consensus 133 ~mt~~eI~~ii~~f~~aA~~a~~aGfDgVeih~ahGyLl~qFlsp~~N~R~D~yG--GslenR~r~~~eii~~vr~~vg~ 210 (353)
T cd04735 133 ELTHEEIEDIIDAFGEATRRAIEAGFDGVEIHGANGYLIQQFFSPHSNRRTDEWG--GSLENRMRFPLAVVKAVQEVIDK 210 (353)
T ss_pred cCCHHHHHHHHHHHHHHHHHHHHcCCCEEEEccccchHHHHhcCCccCCCCcccC--CcHHHHHHHHHHHHHHHHHHhcc
Confidence 356777665554 456799998873 13355 4333 223333333 221
Q ss_pred ---CCEEEEeeccccccCCCCcccCCCHHHHHHHHHHHHHHcCCCcccEEEeccCC--CC---CC--HHHHHHHHHHHHH
Q 018482 85 ---EKVQLATKFGVVKFDVSGLVINGTPEYVRACCEASLKRLDVEYIDLYYQHRVD--TT---VP--IEDTMGELKKLVD 154 (355)
Q Consensus 85 ---~~~~i~tK~~~~~~~~~~~~~~~s~~~i~~~~~~sL~~L~~d~iDl~~lh~p~--~~---~~--~~~~~~~L~~l~~ 154 (355)
.++.|..|+....... ...+.+.. ..+-+.|+..|+|||++ |... .. .. ..+.++.+.+.+.
T Consensus 211 ~~~~~~~v~~R~s~~~~~~----~g~~~ee~-~~i~~~L~~~GvD~I~V---s~g~~~~~~~~~~~~~~~~~~~ik~~~~ 282 (353)
T cd04735 211 HADKDFILGYRFSPEEPEE----PGIRMEDT-LALVDKLADKGLDYLHI---SLWDFDRKSRRGRDDNQTIMELVKERIA 282 (353)
T ss_pred ccCCCceEEEEECcccccC----CCCCHHHH-HHHHHHHHHcCCCEEEe---ccCccccccccCCcchHHHHHHHHHHhC
Confidence 5777888887543211 12344443 24445566777666555 3211 10 01 1223344444332
Q ss_pred cCccceeecCCC-CHHHHHHHhhcCCceeecc
Q 018482 155 EGKIKYIGLSEA-SPDTIRRAHAVHPVTALQM 185 (355)
Q Consensus 155 ~Gkir~iGvS~~-~~~~l~~~~~~~~~~~~q~ 185 (355)
+.+.-|++... +++..+++++. +.+.+.+
T Consensus 283 -~~iPVi~~Ggi~t~e~ae~~l~~-gaD~V~~ 312 (353)
T cd04735 283 -GRLPLIAVGSINTPDDALEALET-GADLVAI 312 (353)
T ss_pred -CCCCEEEECCCCCHHHHHHHHHc-CCChHHH
Confidence 45667777765 78888888776 4555554
No 53
>PRK10128 2-keto-3-deoxy-L-rhamnonate aldolase; Provisional
Probab=63.52 E-value=78 Score=29.16 Aligned_cols=105 Identities=14% Similarity=0.089 Sum_probs=64.6
Q ss_pred HHHHHHHcCccceeec-CCCCHHHHHHHhhc--CCceeeccccccccchhhhchHHHHHHhCCcEEecccCCcccCCCCC
Q 018482 148 ELKKLVDEGKIKYIGL-SEASPDTIRRAHAV--HPVTALQMEWSLWTRAIEDEIVPLCRELGIGIVPYSPLGRGFFGGKA 224 (355)
Q Consensus 148 ~L~~l~~~Gkir~iGv-S~~~~~~l~~~~~~--~~~~~~q~~~n~~~~~~~~~~~~~~~~~gi~v~a~spl~~G~L~g~~ 224 (355)
.|.+..++|+.- +|+ .......+.+.+.. ..+.++-.++.++.......++..++..|+..+..-|-..
T Consensus 8 ~lk~~L~~G~~~-~G~~~~~~sp~~~E~~a~~GfD~v~iD~EHg~~~~~~l~~~i~a~~~~g~~~lVRvp~~~------- 79 (267)
T PRK10128 8 PFKEGLRKGEVQ-IGLWLSSTTSYMAEIAATSGYDWLLIDGEHAPNTIQDLYHQLQAIAPYASQPVIRPVEGS------- 79 (267)
T ss_pred HHHHHHHcCCce-EEEEecCCCcHHHHHHHHcCCCEEEEccccCCCCHHHHHHHHHHHHhcCCCeEEECCCCC-------
Confidence 355555667753 443 33333344444444 4455566788888876557788888888988887766431
Q ss_pred CCCCCCCccccccCCCCCCcchhhhHHHHHHHHHHHHHcCCCHHHHHHHHHhhCCCCeeeecCCCCHHHHHHHHhccCCC
Q 018482 225 SVESLPASSILTWHPRFSGENIDKNKILYLRLQKLAEKHECNPAQLALAWILHQGDDVAPIPGTTKIKNLDDNIGSLRVK 304 (355)
Q Consensus 225 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~la~~~~~s~~qlal~~~l~~~~v~~vIvG~~~~~~l~~nl~a~~~~ 304 (355)
...++.+|..+.-..++|-..+.++.++.+++..+|
T Consensus 80 --------------------------------------------~~~i~r~LD~GA~GIivP~V~saeeA~~~V~a~rYp 115 (267)
T PRK10128 80 --------------------------------------------KPLIKQVLDIGAQTLLIPMVDTAEQARQVVSATRYP 115 (267)
T ss_pred --------------------------------------------HHHHHHHhCCCCCeeEecCcCCHHHHHHHHHhcCCC
Confidence 123455666666667777777777777777666653
No 54
>cd00740 MeTr MeTr subgroup of pterin binding enzymes. This family includes cobalamin-dependent methyltransferases such as methyltetrahydrofolate, corrinoid iron-sulfur protein methyltransferase (MeTr) and methionine synthase (MetH). Cobalamin-dependent methyltransferases catalyze the transfer of a methyl group via a methyl- cob(III)amide intermediate. These include MeTr, a functional heterodimer, and the folate binding domain of MetH.
Probab=63.43 E-value=1.2e+02 Score=27.64 Aligned_cols=103 Identities=13% Similarity=0.030 Sum_probs=62.6
Q ss_pred CCCHHHHHHHHHHHHHHcCCCcccEEEeccCCCCCCHHHHHHHH-HHHHHcCccceeecCCCCHHHHHHHhhc--CCcee
Q 018482 106 NGTPEYVRACCEASLKRLDVEYIDLYYQHRVDTTVPIEDTMGEL-KKLVDEGKIKYIGLSEASPDTIRRAHAV--HPVTA 182 (355)
Q Consensus 106 ~~s~~~i~~~~~~sL~~L~~d~iDl~~lh~p~~~~~~~~~~~~L-~~l~~~Gkir~iGvS~~~~~~l~~~~~~--~~~~~ 182 (355)
..+++.+.+.+++.++ -|.|+||+-. .|. ..+-++.+..+ ..+++.-. .-|.|-+++++.++.+++. ...-+
T Consensus 22 ~~~~d~~~~~A~~~~~-~GAdiIDIG~--~~~-~~~~~ee~~r~v~~i~~~~~-~piSIDT~~~~v~e~aL~~~~G~~iI 96 (252)
T cd00740 22 AEDYDEALDVARQQVE-GGAQILDLNV--DYG-GLDGVSAMKWLLNLLATEPT-VPLMLDSTNWEVIEAGLKCCQGKCVV 96 (252)
T ss_pred cCCHHHHHHHHHHHHH-CCCCEEEECC--CCC-CCCHHHHHHHHHHHHHHhcC-CcEEeeCCcHHHHHHHHhhCCCCcEE
Confidence 3567788888888875 4999999865 233 22323333333 22332212 2478889999999999986 33333
Q ss_pred eccccccccc-hhhhchHHHHHHhCCcEEecccC
Q 018482 183 LQMEWSLWTR-AIEDEIVPLCRELGIGIVPYSPL 215 (355)
Q Consensus 183 ~q~~~n~~~~-~~~~~~~~~~~~~gi~v~a~spl 215 (355)
+-+. .... .....+++.++++|..++....-
T Consensus 97 NsIs--~~~~~e~~~~~~~~~~~~~~~vV~m~~~ 128 (252)
T cd00740 97 NSIN--LEDGEERFLKVARLAKEHGAAVVVLAFD 128 (252)
T ss_pred EeCC--CCCCccccHHHHHHHHHhCCCEEEeccC
Confidence 3332 2221 11256778899999998887543
No 55
>PRK04452 acetyl-CoA decarbonylase/synthase complex subunit delta; Provisional
Probab=63.22 E-value=1.4e+02 Score=28.33 Aligned_cols=116 Identities=13% Similarity=0.172 Sum_probs=68.6
Q ss_pred HHHHHcCCCcccEEEecc-CCC-CCCHHHHHHHHHHHHHcCccce-eecCCC---CHHHHHHHhhcC---Cceeeccccc
Q 018482 118 ASLKRLDVEYIDLYYQHR-VDT-TVPIEDTMGELKKLVDEGKIKY-IGLSEA---SPDTIRRAHAVH---PVTALQMEWS 188 (355)
Q Consensus 118 ~sL~~L~~d~iDl~~lh~-p~~-~~~~~~~~~~L~~l~~~Gkir~-iGvS~~---~~~~l~~~~~~~---~~~~~q~~~n 188 (355)
+.-+.+|.|+||+-+.-. |+. +...++....++...+.=.+-- |..|.. +++.++.+++.. ++-++-+.
T Consensus 83 ~q~~~~GAd~Idl~~~s~dp~~~d~~~~e~~~~Vk~V~eavd~PL~Id~s~n~~kD~evleaale~~~g~~pLInSat-- 160 (319)
T PRK04452 83 KCVEEYGADMITLHLISTDPNGKDKSPEEAAKTVEEVLQAVDVPLIIGGSGNPEKDAEVLEKVAEAAEGERCLLGSAE-- 160 (319)
T ss_pred HHHHHhCCCEEEEECCCCCcccccchHHHHHHHHHHHHHhCCCCEEEecCCCCCCCHHHHHHHHHHhCCCCCEEEECC--
Confidence 445678888888765433 222 2234445555555544433333 555532 678888877652 23333222
Q ss_pred cccchhhhchHHHHHHhCCcEEecccCCcccCCCCCCCCCCCCccccccCCCCCCcchhhhHHHHHHHHHHHHHcCCCHH
Q 018482 189 LWTRAIEDEIVPLCRELGIGIVPYSPLGRGFFGGKASVESLPASSILTWHPRFSGENIDKNKILYLRLQKLAEKHECNPA 268 (355)
Q Consensus 189 ~~~~~~~~~~~~~~~~~gi~v~a~spl~~G~L~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~la~~~~~s~~ 268 (355)
..--+.+.+.|+++|..+++.+|.. ...+.+|...+.++|+++.
T Consensus 161 ---~en~~~i~~lA~~y~~~Vva~s~~D---------------------------------ln~ak~L~~~l~~~Gi~~e 204 (319)
T PRK04452 161 ---EDNYKKIAAAAMAYGHAVIAWSPLD---------------------------------INLAKQLNILLTELGVPRE 204 (319)
T ss_pred ---HHHHHHHHHHHHHhCCeEEEEcHHH---------------------------------HHHHHHHHHHHHHcCCCHH
Confidence 1112679999999999999987653 3445566666667777666
Q ss_pred HHH
Q 018482 269 QLA 271 (355)
Q Consensus 269 qla 271 (355)
++.
T Consensus 205 dIv 207 (319)
T PRK04452 205 RIV 207 (319)
T ss_pred HEE
Confidence 653
No 56
>TIGR01502 B_methylAsp_ase methylaspartate ammonia-lyase. This model describes methylaspartate ammonia-lyase, also called beta-methylaspartase (EC 4.3.1.2). It follows methylaspartate mutase (composed of S and E subunits) in one of several possible pathways of glutamate fermentation.
Probab=62.98 E-value=1.2e+02 Score=29.78 Aligned_cols=86 Identities=8% Similarity=-0.025 Sum_probs=61.6
Q ss_pred cEEEeccCCCCCCHHHHHHHHHHHHHc------CccceeecCCCCHHHHHHHhhcCCceeeccccccccchh-hhchHHH
Q 018482 129 DLYYQHRVDTTVPIEDTMGELKKLVDE------GKIKYIGLSEASPDTIRRAHAVHPVTALQMEWSLWTRAI-EDEIVPL 201 (355)
Q Consensus 129 Dl~~lh~p~~~~~~~~~~~~L~~l~~~------Gkir~iGvS~~~~~~l~~~~~~~~~~~~q~~~n~~~~~~-~~~~~~~ 201 (355)
++ ++..|-+..+.++-++.+.+|++. ..=-..+=|.++.+.+..+++..-.+++|+..+-.-.-. ..++..+
T Consensus 265 ~~-~iEqPv~~~d~~~~~e~la~Lr~~~~~~~~~vPI~aDEs~~t~~d~~~~i~~~a~d~v~iK~~k~GGIt~a~kia~l 343 (408)
T TIGR01502 265 HL-RIEGPMDVGSRQAQIEAMADLRAELDGRGVDAEIVADEWCNTVEDVKFFTDAKAGHMVQIKTPDVGGVNNIARAIMY 343 (408)
T ss_pred Ce-EEecCCCCCcchhhHHHHHHHHHHhhcCCCCceEEecCCCCCHHHHHHHHHhCCCCEEEeCccccCCHHHHHHHHHH
Confidence 55 788876544434567777777765 333344567778999999998888899999777532211 2789999
Q ss_pred HHHhCCcEEecccC
Q 018482 202 CRELGIGIVPYSPL 215 (355)
Q Consensus 202 ~~~~gi~v~a~spl 215 (355)
|+.+||.+...+..
T Consensus 344 A~~~Gi~~~~g~~~ 357 (408)
T TIGR01502 344 CKANGMGAYVGGTC 357 (408)
T ss_pred HHHcCCEEEEeCCC
Confidence 99999999987655
No 57
>TIGR03822 AblA_like_2 lysine-2,3-aminomutase-related protein. Members of this protein form a distinctive clade, homologous to lysine-2,3-aminomutase (of Bacillus, Clostridium, and methanogenic archaea) and likely similar in function. Members of this family are found in Rhodopseudomonas, Caulobacter crescentus, Bradyrhizobium, etc.
Probab=62.66 E-value=1.4e+02 Score=28.19 Aligned_cols=109 Identities=15% Similarity=0.087 Sum_probs=57.9
Q ss_pred CHHHHHHHHHHHHHHcCCCcccEEEeccCCCCC-CHHHHHHHHHHHHHcCccceeecCC---------CCHHHHHHHhhc
Q 018482 108 TPEYVRACCEASLKRLDVEYIDLYYQHRVDTTV-PIEDTMGELKKLVDEGKIKYIGLSE---------ASPDTIRRAHAV 177 (355)
Q Consensus 108 s~~~i~~~~~~sL~~L~~d~iDl~~lh~p~~~~-~~~~~~~~L~~l~~~Gkir~iGvS~---------~~~~~l~~~~~~ 177 (355)
+.+.+.+.++..-+..++ .-+.+--=|+.. ....+.+.++.+++.|.|+.|.+.+ .+.+.++.+.+.
T Consensus 120 ~~~e~~~~i~~i~~~~~I---~~VilSGGDPl~~~~~~L~~ll~~l~~i~~v~~iri~Tr~~v~~p~rit~ell~~L~~~ 196 (321)
T TIGR03822 120 SPAELDAAFAYIADHPEI---WEVILTGGDPLVLSPRRLGDIMARLAAIDHVKIVRFHTRVPVADPARVTPALIAALKTS 196 (321)
T ss_pred CHHHHHHHHHHHHhCCCc---cEEEEeCCCcccCCHHHHHHHHHHHHhCCCccEEEEeCCCcccChhhcCHHHHHHHHHc
Confidence 445555555433333232 223343323332 2356677777788888776555533 233444444443
Q ss_pred CCceeecccccccc--chhhhchHHHHHHhCCcEEecccCCccc
Q 018482 178 HPVTALQMEWSLWT--RAIEDEIVPLCRELGIGIVPYSPLGRGF 219 (355)
Q Consensus 178 ~~~~~~q~~~n~~~--~~~~~~~~~~~~~~gi~v~a~spl~~G~ 219 (355)
.....+.++.|-.. .......++.+++.||.+...+++..|.
T Consensus 197 g~~v~i~l~~~h~~el~~~~~~ai~~L~~~Gi~v~~q~vLl~gv 240 (321)
T TIGR03822 197 GKTVYVALHANHARELTAEARAACARLIDAGIPMVSQSVLLRGV 240 (321)
T ss_pred CCcEEEEecCCChhhcCHHHHHHHHHHHHcCCEEEEEeeEeCCC
Confidence 32233444443111 1112567788889999999999998774
No 58
>PRK09613 thiH thiamine biosynthesis protein ThiH; Reviewed
Probab=62.33 E-value=1.3e+02 Score=30.10 Aligned_cols=104 Identities=15% Similarity=0.183 Sum_probs=65.2
Q ss_pred cCCCHHHHHHHHHHHHHHcCCCcccEEEeccCCCCCCHHHHHHHHHHHHH----cCccceeecCC--CCHHHHHHHhhc-
Q 018482 105 INGTPEYVRACCEASLKRLDVEYIDLYYQHRVDTTVPIEDTMGELKKLVD----EGKIKYIGLSE--ASPDTIRRAHAV- 177 (355)
Q Consensus 105 ~~~s~~~i~~~~~~sL~~L~~d~iDl~~lh~p~~~~~~~~~~~~L~~l~~----~Gkir~iGvS~--~~~~~l~~~~~~- 177 (355)
...+.+.|.+.++. +...|...+-|+.=..| +..+++.+.+.++.+++ .|.++.++|+- .+.++++++.+.
T Consensus 113 ~~Ls~EEI~~ea~~-~~~~G~~~i~LvsGe~p-~~~~~eyi~e~i~~I~~~~~~~g~i~~v~inig~lt~eey~~LkeaG 190 (469)
T PRK09613 113 KKLTQEEIREEVKA-LEDMGHKRLALVAGEDP-PNCDIEYILESIKTIYSTKHGNGEIRRVNVNIAPTTVENYKKLKEAG 190 (469)
T ss_pred eECCHHHHHHHHHH-HHHCCCCEEEEEeCCCC-CCCCHHHHHHHHHHHHHhccccCcceeeEEEeecCCHHHHHHHHHcC
Confidence 34689999999986 57799877766432332 33456766677777765 46777777753 567788777665
Q ss_pred -CCceeecccccc-----ccc-----hhh--hchHHHHHHhCCcEE
Q 018482 178 -HPVTALQMEWSL-----WTR-----AIE--DEIVPLCRELGIGIV 210 (355)
Q Consensus 178 -~~~~~~q~~~n~-----~~~-----~~~--~~~~~~~~~~gi~v~ 210 (355)
....++|-.||. ++. ..+ -+.++.+++.|+.-+
T Consensus 191 v~~~~l~qETY~~ety~~~hp~g~k~~y~~Rl~t~~rA~~aGi~~V 236 (469)
T PRK09613 191 IGTYQLFQETYHKPTYEKMHPSGPKSDYDWRLTAMDRAMEAGIDDV 236 (469)
T ss_pred CCEEEeccccCCHHHHHhcCCCCCCCCHHHHHHHHHHHHHcCCCee
Confidence 345556655541 111 111 456777888888733
No 59
>PRK13352 thiamine biosynthesis protein ThiC; Provisional
Probab=62.29 E-value=1.6e+02 Score=28.85 Aligned_cols=144 Identities=15% Similarity=0.141 Sum_probs=88.8
Q ss_pred CHHHHHHHHHHHHHcCCCeE-eCccCcCCCChhHHHHHHHHhcCCCCCEEEEeecccccc--C---CCCcccCCCHHHHH
Q 018482 40 PDEVGISIIKHAFDQGITFF-DTADVYGPNNANELLVGKALKQFPREKVQLATKFGVVKF--D---VSGLVINGTPEYVR 113 (355)
Q Consensus 40 ~~~~~~~~l~~A~~~Gi~~~-DtA~~Yg~~g~sE~~lg~~L~~~~R~~~~i~tK~~~~~~--~---~~~~~~~~s~~~i~ 113 (355)
+.++-.+-++.|++.|-..+ |-+ ..|+ -..+--..|+. ..+-|-|= ..+.. . ..+...+.+.+.+.
T Consensus 75 d~~~E~~K~~~A~~~GADtiMDLS-tggd---l~~iR~~il~~---s~vpvGTV-PiYqa~~~~~~k~~~~~~mt~d~~~ 146 (431)
T PRK13352 75 DIEEELEKAKVAVKYGADTIMDLS-TGGD---LDEIRRAIIEA---SPVPVGTV-PIYQAAVEAARKYGSVVDMTEDDLF 146 (431)
T ss_pred CHHHHHHHHHHHHHcCCCeEeecc-CCCC---HHHHHHHHHHc---CCCCCcCh-hHHHHHHHHHhcCCChhhCCHHHHH
Confidence 55555566899999998754 444 3443 44444455554 11222221 10000 0 00123467888888
Q ss_pred HHHHHHHHHcCCCcccEEEeccCCCCCCHHHHHHHHHHHHHcCccceeecCCCCHHHHHHHhhcCCceeeccccccccch
Q 018482 114 ACCEASLKRLDVEYIDLYYQHRVDTTVPIEDTMGELKKLVDEGKIKYIGLSEASPDTIRRAHAVHPVTALQMEWSLWTRA 193 (355)
Q Consensus 114 ~~~~~sL~~L~~d~iDl~~lh~p~~~~~~~~~~~~L~~l~~~Gkir~iGvS~~~~~~l~~~~~~~~~~~~q~~~n~~~~~ 193 (355)
+.+++..+ +=+|.+.||.- -+.+.++.++++|+ ..|+-+-....+..++.... .-|++...
T Consensus 147 ~~ie~qa~----~GVDfmTiHcG-------i~~~~~~~~~~~~R--~~giVSRGGs~~~~WM~~n~------~ENPlye~ 207 (431)
T PRK13352 147 DVIEKQAK----DGVDFMTIHCG-------VTRETLERLKKSGR--IMGIVSRGGSFLAAWMLHNN------KENPLYEH 207 (431)
T ss_pred HHHHHHHH----hCCCEEEEccc-------hhHHHHHHHHhcCC--ccCeecCCHHHHHHHHHHcC------CcCchHHH
Confidence 88888776 56789999983 24677888888885 67777766666655544322 34566655
Q ss_pred hhhchHHHHHHhCCcEEe
Q 018482 194 IEDEIVPLCRELGIGIVP 211 (355)
Q Consensus 194 ~~~~~~~~~~~~gi~v~a 211 (355)
. .++++.|+++++.+..
T Consensus 208 f-D~lLeI~~~yDVtlSL 224 (431)
T PRK13352 208 F-DYLLEILKEYDVTLSL 224 (431)
T ss_pred H-HHHHHHHHHhCeeeec
Confidence 4 6899999999999843
No 60
>cd02069 methionine_synthase_B12_BD B12 binding domain of methionine synthase. This domain binds methylcobalamin, which it uses as an intermediate methyl carrier from methyltetrahydrofolate (CH3H4folate) to homocysteine (Hcy).
Probab=61.87 E-value=1.1e+02 Score=26.95 Aligned_cols=145 Identities=14% Similarity=-0.012 Sum_probs=80.3
Q ss_pred CHHHHHHHHHHHHHcCCCeEeCccCcCCCChhHHHHHHHHhc----CCCCCEEEEeeccccccCCCCcccCCCHHHHHHH
Q 018482 40 PDEVGISIIKHAFDQGITFFDTADVYGPNNANELLVGKALKQ----FPREKVQLATKFGVVKFDVSGLVINGTPEYVRAC 115 (355)
Q Consensus 40 ~~~~~~~~l~~A~~~Gi~~~DtA~~Yg~~g~sE~~lg~~L~~----~~R~~~~i~tK~~~~~~~~~~~~~~~s~~~i~~~ 115 (355)
|.+++.++++.|++.|+...|+ -++.+..++.+ -.+.+++++-= ..+.+-+++.
T Consensus 13 D~~~~~~~l~~al~~~~~~~~i---------i~~~l~p~m~~vG~~w~~gei~vaqe-------------~~as~~~~~~ 70 (213)
T cd02069 13 IRDGIEEDTEEARQQYARPLEI---------INGPLMDGMKVVGDLFGAGKMFLPQV-------------LKSARVMKAA 70 (213)
T ss_pred CHHHHHHHHHHHHHcCCCHHHH---------HHHHHHHHHHHHHHHHccCCCcHHHH-------------HHHHHHHHHH
Confidence 7889999999999998765543 22344444443 12344444321 1234445555
Q ss_pred HHHHHHHcCCC-----cccEEEeccCCCCCCHHHHHHHHHHHHHcCc-cceeecCCCCHHHHHHHhhcCCceeecccccc
Q 018482 116 CEASLKRLDVE-----YIDLYYQHRVDTTVPIEDTMGELKKLVDEGK-IKYIGLSEASPDTIRRAHAVHPVTALQMEWSL 189 (355)
Q Consensus 116 ~~~sL~~L~~d-----~iDl~~lh~p~~~~~~~~~~~~L~~l~~~Gk-ir~iGvS~~~~~~l~~~~~~~~~~~~q~~~n~ 189 (355)
+.....++... ..--+++-.+..+.+--...=.-.-|...|. |-++|+.. +++.+.+++...+++++.+....
T Consensus 71 l~~l~~~l~~~~~~~~~~~~vvl~t~~gd~HdiG~~iv~~~l~~~G~~Vi~LG~~v-p~e~~v~~~~~~~~~~V~lS~~~ 149 (213)
T cd02069 71 VAYLEPYMEKEKGENSSKGKIVLATVKGDVHDIGKNLVGVILSNNGYEVIDLGVMV-PIEKILEAAKEHKADIIGLSGLL 149 (213)
T ss_pred HHHHHHHHhhccccCCCCCeEEEEeCCCchhHHHHHHHHHHHHhCCCEEEECCCCC-CHHHHHHHHHHcCCCEEEEccch
Confidence 55552323211 1123445555444322211111123455665 88899766 67777777777788888776554
Q ss_pred ccchhh-hchHHHHHHhCC
Q 018482 190 WTRAIE-DEIVPLCRELGI 207 (355)
Q Consensus 190 ~~~~~~-~~~~~~~~~~gi 207 (355)
...... .++++.+++.+.
T Consensus 150 ~~~~~~~~~~i~~L~~~~~ 168 (213)
T cd02069 150 VPSLDEMVEVAEEMNRRGI 168 (213)
T ss_pred hccHHHHHHHHHHHHhcCC
Confidence 433222 778888888865
No 61
>cd02070 corrinoid_protein_B12-BD B12 binding domain of corrinoid proteins. A family of small methanogenic corrinoid proteins that bind methyl-Co(III) 5-hydroxybenzimidazolylcobamide as a cofactor. They play a role on the methanogenesis from trimethylamine, dimethylamine or monomethylamine, which is initiated by a series of corrinoid-dependent methyltransferases.
Probab=61.34 E-value=1.1e+02 Score=26.63 Aligned_cols=145 Identities=14% Similarity=0.109 Sum_probs=81.9
Q ss_pred CHHHHHHHHHHHHHcCCCeEeCccCcCCCChhHHHHHHHHhcC----CCCCEEEEeeccccccCCCCcccCCCHHHHHHH
Q 018482 40 PDEVGISIIKHAFDQGITFFDTADVYGPNNANELLVGKALKQF----PREKVQLATKFGVVKFDVSGLVINGTPEYVRAC 115 (355)
Q Consensus 40 ~~~~~~~~l~~A~~~Gi~~~DtA~~Yg~~g~sE~~lg~~L~~~----~R~~~~i~tK~~~~~~~~~~~~~~~s~~~i~~~ 115 (355)
|.+++.++++.+++.|+...|. -+.++..++++. .+.+++++-= ....+.+++.
T Consensus 9 D~~~~~~~v~~~l~~g~~~~~i---------~~~~l~p~m~~vG~~w~~~~i~va~e-------------~~as~~~~~~ 66 (201)
T cd02070 9 DEEETVELVKKALEAGIDPQDI---------IEEGLAPGMDIVGDKYEEGEIFVPEL-------------LMAADAMKAG 66 (201)
T ss_pred CHHHHHHHHHHHHHcCCCHHHH---------HHHHHHHHHHHHHHHHccCCeeHHHH-------------HHHHHHHHHH
Confidence 7889999999999999765553 223344444331 2233333211 1233444555
Q ss_pred HHHHHHHcCCCc---ccEEEeccCCCCCCHHHHHHHHHHHHHcCc-cceeecCCCCHHHHHHHhhcCCceeecccccccc
Q 018482 116 CEASLKRLDVEY---IDLYYQHRVDTTVPIEDTMGELKKLVDEGK-IKYIGLSEASPDTIRRAHAVHPVTALQMEWSLWT 191 (355)
Q Consensus 116 ~~~sL~~L~~d~---iDl~~lh~p~~~~~~~~~~~~L~~l~~~Gk-ir~iGvS~~~~~~l~~~~~~~~~~~~q~~~n~~~ 191 (355)
+......+.... ---+++-.+..+...-...=.-.-|+..|. |.++| .+-+.+.+.+.+...+++++-+..+...
T Consensus 67 l~~l~~~~~~~~~~~~~~vl~~~~~gd~H~lG~~~v~~~l~~~G~~vi~lG-~~~p~~~l~~~~~~~~~d~v~lS~~~~~ 145 (201)
T cd02070 67 LDLLKPLLGKSKSAKKGKVVIGTVEGDIHDIGKNLVATMLEANGFEVIDLG-RDVPPEEFVEAVKEHKPDILGLSALMTT 145 (201)
T ss_pred HHHHHHHHhhcCCCCCCeEEEEecCCccchHHHHHHHHHHHHCCCEEEECC-CCCCHHHHHHHHHHcCCCEEEEeccccc
Confidence 555444443322 123455555444332222222234556776 67788 4457888888888888888887765544
Q ss_pred chhh-hchHHHHHHhCC
Q 018482 192 RAIE-DEIVPLCRELGI 207 (355)
Q Consensus 192 ~~~~-~~~~~~~~~~gi 207 (355)
.-.. .++++.+++.+.
T Consensus 146 ~~~~~~~~i~~lr~~~~ 162 (201)
T cd02070 146 TMGGMKEVIEALKEAGL 162 (201)
T ss_pred cHHHHHHHHHHHHHCCC
Confidence 3222 677888888754
No 62
>PRK15072 bifunctional D-altronate/D-mannonate dehydratase; Provisional
Probab=60.53 E-value=57 Score=31.90 Aligned_cols=84 Identities=6% Similarity=-0.002 Sum_probs=60.9
Q ss_pred ccEEEeccCCCCCCHHHHHHHHHHHHHcCccc-eeecCCCCHHHHHHHhhcCCceeeccccccccch-hhhchHHHHHHh
Q 018482 128 IDLYYQHRVDTTVPIEDTMGELKKLVDEGKIK-YIGLSEASPDTIRRAHAVHPVTALQMEWSLWTRA-IEDEIVPLCREL 205 (355)
Q Consensus 128 iDl~~lh~p~~~~~~~~~~~~L~~l~~~Gkir-~iGvS~~~~~~l~~~~~~~~~~~~q~~~n~~~~~-~~~~~~~~~~~~ 205 (355)
.++.++..|-+. +-++.+.+|++.-.+. ..|=|.++...++.+++...++++|+...-.-.- .-..+...|+.+
T Consensus 232 ~~l~~iEeP~~~----~d~~~~~~L~~~~~iPIa~dEs~~~~~~~~~li~~~a~dii~~d~~~~GGit~~~kia~lA~~~ 307 (404)
T PRK15072 232 YRLFWLEDPTPA----ENQEAFRLIRQHTTTPLAVGEVFNSIWDCKQLIEEQLIDYIRTTVTHAGGITHLRRIADFAALY 307 (404)
T ss_pred cCCcEEECCCCc----cCHHHHHHHHhcCCCCEEeCcCccCHHHHHHHHHcCCCCEEecCccccCcHHHHHHHHHHHHHc
Confidence 466677666432 2367788888876555 6677888999999999988899999866643211 126789999999
Q ss_pred CCcEEecccC
Q 018482 206 GIGIVPYSPL 215 (355)
Q Consensus 206 gi~v~a~spl 215 (355)
|+.++..+..
T Consensus 308 gi~~~~h~~~ 317 (404)
T PRK15072 308 QVRTGSHGPT 317 (404)
T ss_pred CCceeeccCc
Confidence 9999876543
No 63
>cd03318 MLE Muconate Lactonizing Enzyme (MLE), an homooctameric enzyme, catalyses the conversion of cis,cis-muconate (CCM) to muconolactone (ML) in the catechol branch of the beta-ketoadipate pathway. This pathway is used in soil microbes to breakdown lignin-derived aromatics, catechol and protocatechuate, to citric acid cycle intermediates. Some bacterial species are also capable of dehalogenating chloroaromatic compounds by the action of chloromuconate lactonizing enzymes (Cl-MLEs). MLEs are members of the enolase superfamily characterized by the presence of an enolate anion intermediate which is generated by abstraction of the alpha-proton of the carboxylate substrate by an active site residue and that is stabilized by coordination to the essential Mg2+ ion.
Probab=60.07 E-value=37 Score=32.59 Aligned_cols=72 Identities=10% Similarity=0.121 Sum_probs=51.3
Q ss_pred HHHHHHHHHHcCccc-eeecCCCCHHHHHHHhhcCCceeeccccccccch-hhhchHHHHHHhCCcEEecccCC
Q 018482 145 TMGELKKLVDEGKIK-YIGLSEASPDTIRRAHAVHPVTALQMEWSLWTRA-IEDEIVPLCRELGIGIVPYSPLG 216 (355)
Q Consensus 145 ~~~~L~~l~~~Gkir-~iGvS~~~~~~l~~~~~~~~~~~~q~~~n~~~~~-~~~~~~~~~~~~gi~v~a~spl~ 216 (355)
-++.+.+|.+...+. .+|=|.++...+..+++...++++|+.....-.- .-.++...|+++|+.++..+-+.
T Consensus 227 ~~~~~~~l~~~~~~pia~dE~~~~~~~~~~~i~~~~~d~~~~d~~~~GGit~~~~~~~~a~~~gi~~~~~~~~~ 300 (365)
T cd03318 227 NLDGLARLRSRNRVPIMADESVSGPADAFELARRGAADVFSLKIAKSGGLRRAQKVAAIAEAAGIALYGGTMLE 300 (365)
T ss_pred cHHHHHHHHhhcCCCEEcCcccCCHHHHHHHHHhCCCCeEEEeecccCCHHHHHHHHHHHHHcCCceeecCcch
Confidence 367777887775555 5566777888999988887788888865543211 12678999999999987654443
No 64
>PRK00730 rnpA ribonuclease P; Reviewed
Probab=59.85 E-value=47 Score=27.36 Aligned_cols=63 Identities=6% Similarity=0.154 Sum_probs=45.6
Q ss_pred CCCCEEEEeeccccccCCCCcccCCCHHHHHHHHHHHHHHcC--CCcccEEEeccCCCCCCHHHHHHHHHHHHHc
Q 018482 83 PREKVQLATKFGVVKFDVSGLVINGTPEYVRACCEASLKRLD--VEYIDLYYQHRVDTTVPIEDTMGELKKLVDE 155 (355)
Q Consensus 83 ~R~~~~i~tK~~~~~~~~~~~~~~~s~~~i~~~~~~sL~~L~--~d~iDl~~lh~p~~~~~~~~~~~~L~~l~~~ 155 (355)
.|=-+.|+-|++. ...+..|++.+.++++.+. +...|++++.......+..++...|..+.++
T Consensus 46 ~RlG~sVSKKvg~----------AV~RNRiKR~lREafR~~~~~l~g~DiVviaR~~~~~~f~~L~~~l~~~~~~ 110 (138)
T PRK00730 46 CKVGITVSKKFGK----------AHQRNRFKRIVREAFRHVRHNLPGCQIVVSPKGNSQPDFLKLLQDFLQQIPE 110 (138)
T ss_pred ceEEEEEeccccc----------chhHHHHHHHHHHHHHHhhcccCCceEEEEeccccCCCHHHHHHHHHHHHHH
Confidence 3445667667654 2568888998888888774 4568999999988767777777777666554
No 65
>TIGR03239 GarL 2-dehydro-3-deoxyglucarate aldolase. In E. coli this enzyme (GarL, ) 2-dehydro-3-deoxyglucarate aldolase acts in the catabolism of several sugars including D-galactarate, D-glucarate and L-idarate. In fact, 5-dehydro-4-deoxy-D-glucarate aldolase is a synonym for this enzyme as it is unclear in the literature whether the enzyme acts on only one of these or, as seems likely, has no preference. (Despite the apparent large difference in substrate stucture indicated by their names, 2-DH-3DO- and 5-DH-4DO-glucarate differ only by the chirality of most central hydroxyl-bearing carbon and is alternately named 2-DH-3DO-galactarate.) The reported product of D-galactarate dehydratase (4.2.1.42) is the 5DH-4DO-glucarate isomer and this enzyme is found proximal to the aldolase in many genomes (GenProp0714) where no epimerase is known. Similarly, the product of D-glucarate dehydratase (4.2.1.40) is again the 5-DH-4DO isomer, so the provenance of the 2-DH-3DO-glucarate isomer for which
Probab=59.80 E-value=79 Score=28.75 Aligned_cols=67 Identities=10% Similarity=-0.056 Sum_probs=41.2
Q ss_pred HHHHHHcCccceeec-CCCCHHHHHHHhhc--CCceeeccccccccchhhhchHHHHHHhCCcEEecccCC
Q 018482 149 LKKLVDEGKIKYIGL-SEASPDTIRRAHAV--HPVTALQMEWSLWTRAIEDEIVPLCRELGIGIVPYSPLG 216 (355)
Q Consensus 149 L~~l~~~Gkir~iGv-S~~~~~~l~~~~~~--~~~~~~q~~~n~~~~~~~~~~~~~~~~~gi~v~a~spl~ 216 (355)
|.+-.++|+. .+|+ .+.....+.+.+.. ..+.++-.++.++.......++..++..|+..+..-|-.
T Consensus 3 lk~~l~~g~~-~~G~~~~~~sp~~~e~~a~~G~D~v~iD~EHg~~~~~~~~~~~~a~~~~g~~~~VRvp~~ 72 (249)
T TIGR03239 3 FRQDLLARET-LIGCWSALGNPITTEVLGLAGFDWLLLDGEHAPNDVLTFIPQLMALKGSASAPVVRPPWN 72 (249)
T ss_pred HHHHHHcCCc-eEEEEEcCCCcHHHHHHHhcCCCEEEEecccCCCCHHHHHHHHHHHhhcCCCcEEECCCC
Confidence 3444455664 3443 33333344444444 445666678888877655778888888898888876654
No 66
>TIGR00735 hisF imidazoleglycerol phosphate synthase, cyclase subunit.
Probab=59.56 E-value=1e+02 Score=27.98 Aligned_cols=90 Identities=17% Similarity=0.137 Sum_probs=52.3
Q ss_pred HHHHHHcCCCcccEEEeccCCCCCCHH-HHHHHHHHHHHcCccceeecCC-CCHHHHHHHhhcCCceeeccccccccchh
Q 018482 117 EASLKRLDVEYIDLYYQHRVDTTVPIE-DTMGELKKLVDEGKIKYIGLSE-ASPDTIRRAHAVHPVTALQMEWSLWTRAI 194 (355)
Q Consensus 117 ~~sL~~L~~d~iDl~~lh~p~~~~~~~-~~~~~L~~l~~~Gkir~iGvS~-~~~~~l~~~~~~~~~~~~q~~~n~~~~~~ 194 (355)
-+-|+.+|. |.+.+|..+.+.... --|+.+.++++.-.+.-|.... .+.+.+.++.+....+.+.+---+.....
T Consensus 161 ~~~l~~~G~---~~iivt~i~~~g~~~g~~~~~~~~i~~~~~ipvia~GGi~s~~di~~~~~~g~~dgv~~g~a~~~~~~ 237 (254)
T TIGR00735 161 AKEVEKLGA---GEILLTSMDKDGTKSGYDLELTKAVSEAVKIPVIASGGAGKPEHFYEAFTKGKADAALAASVFHYREI 237 (254)
T ss_pred HHHHHHcCC---CEEEEeCcCcccCCCCCCHHHHHHHHHhCCCCEEEeCCCCCHHHHHHHHHcCCcceeeEhHHHhCCCC
Confidence 344456664 566667655432111 1255566666655566665553 36788888888765666554222222111
Q ss_pred -hhchHHHHHHhCCcE
Q 018482 195 -EDEIVPLCRELGIGI 209 (355)
Q Consensus 195 -~~~~~~~~~~~gi~v 209 (355)
..++.+.|+++||.+
T Consensus 238 ~~~~~~~~~~~~gi~~ 253 (254)
T TIGR00735 238 TIGEVKEYLAERGIPV 253 (254)
T ss_pred CHHHHHHHHHHCCCcc
Confidence 267889999999864
No 67
>cd03314 MAL Methylaspartate ammonia lyase (3-methylaspartase, MAL) is a homodimeric enzyme, catalyzing the magnesium-dependent reversible alpha,beta-elimination of ammonia from L-threo-(2S,3S)-3-methylaspartic acid to mesaconic acid. This reaction is part of the main catabolic pathway for glutamate. MAL belongs to the enolase superfamily of enzymes, characterized by the presence of an enolate anion intermediate which is generated by abstraction of the alpha-proton of the carboxylate substrate by an active site residue and is stabilized by coordination to the essential Mg2+ ion.
Probab=59.27 E-value=1.3e+02 Score=29.13 Aligned_cols=85 Identities=14% Similarity=0.035 Sum_probs=60.1
Q ss_pred EEEeccCCCCCCHHHHHHHHHHHHHc------CccceeecCCCCHHHHHHHhhcCCceeeccccccccchh-hhchHHHH
Q 018482 130 LYYQHRVDTTVPIEDTMGELKKLVDE------GKIKYIGLSEASPDTIRRAHAVHPVTALQMEWSLWTRAI-EDEIVPLC 202 (355)
Q Consensus 130 l~~lh~p~~~~~~~~~~~~L~~l~~~------Gkir~iGvS~~~~~~l~~~~~~~~~~~~q~~~n~~~~~~-~~~~~~~~ 202 (355)
++++..|-+..++++-++.+.+|.+. +.=-..|-|.++...++++++....+++|+..+-.-.-. ...+..+|
T Consensus 229 ~~~iEqP~~~~d~~~~~~~~a~Lr~~~~~~~~~iPIa~dEs~~t~~d~~~li~~~a~div~~kl~k~GGIt~a~kia~lA 308 (369)
T cd03314 229 PLRIEGPMDAGSREAQIERMAALRAELDRRGVGVRIVADEWCNTLEDIRDFADAGAAHMVQIKTPDLGGIDNTIDAVLYC 308 (369)
T ss_pred cEEEecCCCCCcchhhHHHHHHHHHHhhcCCCCceEEecCCcCCHHHHHHHHHhCCCCEEEecchhcCCHHHHHHHHHHH
Confidence 45777775443333456777777766 333344667788999999999888999999777533211 27889999
Q ss_pred HHhCCcEEeccc
Q 018482 203 RELGIGIVPYSP 214 (355)
Q Consensus 203 ~~~gi~v~a~sp 214 (355)
+.+||.++..+.
T Consensus 309 ~a~Gi~~~~h~~ 320 (369)
T cd03314 309 KEHGVGAYLGGS 320 (369)
T ss_pred HHcCCcEEEeCC
Confidence 999999998654
No 68
>COG0135 TrpF Phosphoribosylanthranilate isomerase [Amino acid transport and metabolism]
Probab=59.12 E-value=50 Score=29.24 Aligned_cols=84 Identities=14% Similarity=0.207 Sum_probs=53.8
Q ss_pred HHHHcCCCcccEEEeccCCCCCCHHHHHHHHHHHHHcCc-cceeecCC-CCHHHHHHHhhcCCceeeccccccccchhhh
Q 018482 119 SLKRLDVEYIDLYYQHRVDTTVPIEDTMGELKKLVDEGK-IKYIGLSE-ASPDTIRRAHAVHPVTALQMEWSLWTRAIED 196 (355)
Q Consensus 119 sL~~L~~d~iDl~~lh~p~~~~~~~~~~~~L~~l~~~Gk-ir~iGvS~-~~~~~l~~~~~~~~~~~~q~~~n~~~~~~~~ 196 (355)
....+|.||+-+++.-...+....++ .+++...-. ++.+||.. .+.+++.++++..+++.+|++-.. ..
T Consensus 17 ~a~~~gad~iG~If~~~SpR~Vs~~~----a~~i~~~v~~~~~VgVf~n~~~~~i~~i~~~~~ld~VQlHG~e-----~~ 87 (208)
T COG0135 17 AAAKAGADYIGFIFVPKSPRYVSPEQ----AREIASAVPKVKVVGVFVNESIEEILEIAEELGLDAVQLHGDE-----DP 87 (208)
T ss_pred HHHHcCCCEEEEEEcCCCCCcCCHHH----HHHHHHhCCCCCEEEEECCCCHHHHHHHHHhcCCCEEEECCCC-----CH
Confidence 34568889987777653233344333 333333333 88999974 578899999999999999995442 24
Q ss_pred chHHHHHHhC-CcEEe
Q 018482 197 EIVPLCRELG-IGIVP 211 (355)
Q Consensus 197 ~~~~~~~~~g-i~v~a 211 (355)
+.++..++.. +.++-
T Consensus 88 ~~~~~l~~~~~~~v~k 103 (208)
T COG0135 88 EYIDQLKEELGVPVIK 103 (208)
T ss_pred HHHHHHHhhcCCceEE
Confidence 4556666554 55554
No 69
>cd07943 DRE_TIM_HOA 4-hydroxy-2-oxovalerate aldolase, N-terminal catalytic TIM barrel domain. 4-hydroxy 2-ketovalerate aldolase (Also known as 4-hydroxy-2-ketovalerate aldolase and 4-hydroxy-2-oxopentanoate aldolase (HOA)) converts 4-hydroxy-2-oxopentanoate to acetaldehyde and pyruvate, the penultimate step in the meta-cleavage pathway for the degradation of phenols, cresols and catechol. This family includes the Escherichia coli MhpE aldolase, the Pseudomonas DmpG aldolase, and the Burkholderia xenovorans BphI pyruvate aldolase. In Pseudomonas, the DmpG aldolase tightly associates with a dehydrogenase (DmpF ) and is inactive without it. HOA has a canonical TIM-barrel fold with a C-terminal extension that forms a funnel leading to the active site. This family belongs to the DRE-TIM metallolyase superfamily. DRE-TIM metallolyases include 2-isopropylmalate synthase (IPMS), alpha-isopropylmalate synthase (LeuA), 3-hydroxy-3-methylglutaryl-CoA lyase, homocitrate synthase, citramalate
Probab=59.10 E-value=1.4e+02 Score=27.12 Aligned_cols=148 Identities=13% Similarity=0.064 Sum_probs=77.6
Q ss_pred CCCCCHHHHHHHHHHHHHcCCCeEeCccC-----------cCCCChhHHHHHHHHhcCCCCCEEEEeeccccccCCCCcc
Q 018482 36 NDPVPDEVGISIIKHAFDQGITFFDTADV-----------YGPNNANELLVGKALKQFPREKVQLATKFGVVKFDVSGLV 104 (355)
Q Consensus 36 ~~~~~~~~~~~~l~~A~~~Gi~~~DtA~~-----------Yg~~g~sE~~lg~~L~~~~R~~~~i~tK~~~~~~~~~~~~ 104 (355)
+..++.++..++++...+.||..++.+.- |.. -..++.+.+..+..+..++.+..- +.+
T Consensus 16 ~~~~~~~~k~~i~~~L~~~Gv~~iEvg~~~~~~~~~~~~~~~~-~~~~e~i~~~~~~~~~~~~~~~~~--~~~------- 85 (263)
T cd07943 16 RHQFTLEQVRAIARALDAAGVPLIEVGHGDGLGGSSLNYGFAA-HTDEEYLEAAAEALKQAKLGVLLL--PGI------- 85 (263)
T ss_pred CeecCHHHHHHHHHHHHHcCCCEEEeecCCCCCCcccccCCCC-CChHHHHHHHHHhccCCEEEEEec--CCc-------
Confidence 33458899999999999999999999721 211 124455555544434333322211 001
Q ss_pred cCCCHHHHHHHHHHHHHHcCCCcccEEEeccCCCCCCHHHHHHHHHHHHHcCccceeec---CCCCHHHHHHHhhc---C
Q 018482 105 INGTPEYVRACCEASLKRLDVEYIDLYYQHRVDTTVPIEDTMGELKKLVDEGKIKYIGL---SEASPDTIRRAHAV---H 178 (355)
Q Consensus 105 ~~~s~~~i~~~~~~sL~~L~~d~iDl~~lh~p~~~~~~~~~~~~L~~l~~~Gkir~iGv---S~~~~~~l~~~~~~---~ 178 (355)
...+. ++..++ .|++.+-++.-- .+...+.+.++..++.|.--.+.+ +.++++.+.++.+. .
T Consensus 86 --~~~~~----i~~a~~-~g~~~iri~~~~-----s~~~~~~~~i~~ak~~G~~v~~~~~~~~~~~~~~~~~~~~~~~~~ 153 (263)
T cd07943 86 --GTVDD----LKMAAD-LGVDVVRVATHC-----TEADVSEQHIGAARKLGMDVVGFLMMSHMASPEELAEQAKLMESY 153 (263)
T ss_pred --cCHHH----HHHHHH-cCCCEEEEEech-----hhHHHHHHHHHHHHHCCCeEEEEEEeccCCCHHHHHHHHHHHHHc
Confidence 11233 344433 355555443311 123566777888888887444444 22455555444332 3
Q ss_pred Cceeecc--ccccccchhhhchHHHHHHh
Q 018482 179 PVTALQM--EWSLWTRAIEDEIVPLCREL 205 (355)
Q Consensus 179 ~~~~~q~--~~n~~~~~~~~~~~~~~~~~ 205 (355)
+.+.+.+ .+..+.+..-.+++..++++
T Consensus 154 G~d~i~l~DT~G~~~P~~v~~lv~~l~~~ 182 (263)
T cd07943 154 GADCVYVTDSAGAMLPDDVRERVRALREA 182 (263)
T ss_pred CCCEEEEcCCCCCcCHHHHHHHHHHHHHh
Confidence 4454444 23344443335666666654
No 70
>cd02933 OYE_like_FMN Old yellow enzyme (OYE)-like FMN binding domain. OYE was the first flavin-dependent enzyme identified, however its true physiological role remains elusive to this day. Each monomer of OYE contains FMN as a non-covalently bound cofactor, uses NADPH as a reducing agent with oxygens, quinones, and alpha,beta-unsaturated aldehydes and ketones, and can act as electron acceptors in the catalytic reaction. Members of OYE family include 12-oxophytodienoate reductase, pentaerythritol tetranitrate reductase, morphinone reductase, and related enzymes.
Probab=58.73 E-value=1.7e+02 Score=27.88 Aligned_cols=68 Identities=15% Similarity=0.076 Sum_probs=33.3
Q ss_pred HHHHHHHcCCCcccEEEeccCCCCCCHHHHHHHHHHHHHcCccceeecCCCCHHHHHHHhhcCCceeecc
Q 018482 116 CEASLKRLDVEYIDLYYQHRVDTTVPIEDTMGELKKLVDEGKIKYIGLSEASPDTIRRAHAVHPVTALQM 185 (355)
Q Consensus 116 ~~~sL~~L~~d~iDl~~lh~p~~~~~~~~~~~~L~~l~~~Gkir~iGvS~~~~~~l~~~~~~~~~~~~q~ 185 (355)
+-+.|+..|+|++++- |.........-.++..+.+++.=.+--|++..++++..+++++....|.+.+
T Consensus 246 ~~~~l~~~g~d~i~vs--~g~~~~~~~~~~~~~~~~ik~~~~ipvi~~G~i~~~~a~~~l~~g~~D~V~~ 313 (338)
T cd02933 246 LAKELNKRGLAYLHLV--EPRVAGNPEDQPPDFLDFLRKAFKGPLIAAGGYDAESAEAALADGKADLVAF 313 (338)
T ss_pred HHHHHHHcCCcEEEEe--cCCCCCcccccchHHHHHHHHHcCCCEEEECCCCHHHHHHHHHcCCCCEEEe
Confidence 4455566666555541 2111100111223444444444455666666666666666666655555554
No 71
>TIGR02534 mucon_cyclo muconate and chloromuconate cycloisomerases. This model encompasses muconate cycloisomerase (EC 5.5.1.1) and chloromuconate cycloisomerase (EC 5.5.1.7), enzymes that often overlap in specificity. It excludes more distantly related proteins such as mandelate racemase (5.1.2.2).
Probab=58.12 E-value=44 Score=32.13 Aligned_cols=73 Identities=11% Similarity=0.065 Sum_probs=53.2
Q ss_pred HHHHHHHHHcCccc-eeecCCCCHHHHHHHhhcCCceeeccccccccch-hhhchHHHHHHhCCcEEecccCCcc
Q 018482 146 MGELKKLVDEGKIK-YIGLSEASPDTIRRAHAVHPVTALQMEWSLWTRA-IEDEIVPLCRELGIGIVPYSPLGRG 218 (355)
Q Consensus 146 ~~~L~~l~~~Gkir-~iGvS~~~~~~l~~~~~~~~~~~~q~~~n~~~~~-~~~~~~~~~~~~gi~v~a~spl~~G 218 (355)
++.+.+|++...+. ..|=|.++...+..+++...++++|+.....-.- ....+...|+.+|+.++..+.+.++
T Consensus 227 ~~~~~~l~~~~~~pia~dE~~~~~~~~~~~~~~~~~d~~~~d~~~~GGi~~~~~i~~lA~~~gi~~~~~~~~~s~ 301 (368)
T TIGR02534 227 REALARLTRRFNVPIMADESVTGPADALAIAKASAADVFALKTTKSGGLLESKKIAAIAEAAGIALYGGTMLEGP 301 (368)
T ss_pred HHHHHHHHHhCCCCEEeCcccCCHHHHHHHHHhCCCCEEEEcccccCCHHHHHHHHHHHHHcCCceeeecchhhH
Confidence 67777787776555 6677888898998888888889999866653211 1267899999999998776555433
No 72
>KOG2733 consensus Uncharacterized membrane protein [Function unknown]
Probab=56.60 E-value=6.7 Score=37.47 Aligned_cols=50 Identities=14% Similarity=0.098 Sum_probs=35.4
Q ss_pred HHHHHHHHHcCCCeEeCccCcCCCChhHHHHHHHHhcCCCCCEEEEeeccccc
Q 018482 45 ISIIKHAFDQGITFFDTADVYGPNNANELLVGKALKQFPREKVQLATKFGVVK 97 (355)
Q Consensus 45 ~~~l~~A~~~Gi~~~DtA~~Yg~~g~sE~~lg~~L~~~~R~~~~i~tK~~~~~ 97 (355)
+.++++|+|.|-+++|.+..-. --|+.-.+.=+..++.-++|++-+|+..
T Consensus 99 E~VVkacienG~~~vDISGEP~---f~E~mq~kYhd~A~ekGVYIVsaCGfDS 148 (423)
T KOG2733|consen 99 EPVVKACIENGTHHVDISGEPQ---FMERMQLKYHDLAKEKGVYIVSACGFDS 148 (423)
T ss_pred cHHHHHHHHcCCceeccCCCHH---HHHHHHHHHHHHHHhcCeEEEeecccCC
Confidence 5789999999999999873211 2444444444435678899999998654
No 73
>PRK07259 dihydroorotate dehydrogenase 1B; Reviewed
Probab=56.03 E-value=1.7e+02 Score=27.11 Aligned_cols=155 Identities=11% Similarity=0.062 Sum_probs=90.0
Q ss_pred CHHHHHHHHHHHHHcC-CCeEeC---ccCcCC----CChhHHHHHHHHhcCCC-CCEEEEeeccccccCCCCcccCCCHH
Q 018482 40 PDEVGISIIKHAFDQG-ITFFDT---ADVYGP----NNANELLVGKALKQFPR-EKVQLATKFGVVKFDVSGLVINGTPE 110 (355)
Q Consensus 40 ~~~~~~~~l~~A~~~G-i~~~Dt---A~~Yg~----~g~sE~~lg~~L~~~~R-~~~~i~tK~~~~~~~~~~~~~~~s~~ 110 (355)
+.++..+..+.+.+.| +..||- +++... -+...+.+-+.++..++ -++-|..|+.+.. +
T Consensus 102 ~~~~~~~~a~~~~~aG~~D~iElN~~cP~~~~gg~~~~~~~~~~~eiv~~vr~~~~~pv~vKl~~~~------------~ 169 (301)
T PRK07259 102 TEEEYAEVAEKLSKAPNVDAIELNISCPNVKHGGMAFGTDPELAYEVVKAVKEVVKVPVIVKLTPNV------------T 169 (301)
T ss_pred CHHHHHHHHHHHhccCCcCEEEEECCCCCCCCCccccccCHHHHHHHHHHHHHhcCCCEEEEcCCCc------------h
Confidence 6678888888888998 999985 222110 02355677777765332 2677888986421 1
Q ss_pred HHHHHHHHHHHHcCCCcccEEE-eccC--CCCC----------C------HHHHHHHHHHHHHcCccceeecCCC-CHHH
Q 018482 111 YVRACCEASLKRLDVEYIDLYY-QHRV--DTTV----------P------IEDTMGELKKLVDEGKIKYIGLSEA-SPDT 170 (355)
Q Consensus 111 ~i~~~~~~sL~~L~~d~iDl~~-lh~p--~~~~----------~------~~~~~~~L~~l~~~Gkir~iGvS~~-~~~~ 170 (355)
.+ ..+-+.|+..|.|.+++.- ++.. +... . ..-.++.+.++++.=.+--||+... +.+.
T Consensus 170 ~~-~~~a~~l~~~G~d~i~~~nt~~g~~~~~~~~~~~~~~~~gg~sg~~~~p~~l~~v~~i~~~~~ipvi~~GGI~~~~d 248 (301)
T PRK07259 170 DI-VEIAKAAEEAGADGLSLINTLKGMAIDIKTRKPILANVTGGLSGPAIKPIALRMVYQVYQAVDIPIIGMGGISSAED 248 (301)
T ss_pred hH-HHHHHHHHHcCCCEEEEEccccccccccccCceeecCCcCccCCcCcccccHHHHHHHHHhCCCCEEEECCCCCHHH
Confidence 22 2344557778877765531 1111 0000 0 0124666677776556888888875 7888
Q ss_pred HHHHhhcCCceeecccccccc-c----hhhhchHHHHHHhCCc
Q 018482 171 IRRAHAVHPVTALQMEWSLWT-R----AIEDEIVPLCRELGIG 208 (355)
Q Consensus 171 l~~~~~~~~~~~~q~~~n~~~-~----~~~~~~~~~~~~~gi~ 208 (355)
+.+++.. +.+.+|+---++. . ....++-.++.++|..
T Consensus 249 a~~~l~a-GAd~V~igr~ll~~P~~~~~i~~~l~~~~~~~g~~ 290 (301)
T PRK07259 249 AIEFIMA-GASAVQVGTANFYDPYAFPKIIEGLEAYLDKYGIK 290 (301)
T ss_pred HHHHHHc-CCCceeEcHHHhcCcHHHHHHHHHHHHHHHHcCCC
Confidence 8888864 4688886333222 1 1225666777777653
No 74
>TIGR01928 menC_lowGC/arch o-succinylbenzoic acid (OSB) synthetase. This model describes the enzyme o-succinylbenzoic acid synthetase (menC) that is involved in one of the steps of the menaquinone biosynthesis pathway. It takes SHCHC and makes it into 2-succinylbenzoate. Included in this model are low GC gram positive bacteria and archaea. Also included in the seed and in the model are enzymes with the com-name of N-acylamino acid racemase (or the more general term, racemase / racemase family), which refers to the enzyme's industrial application as racemases, and not to its biological function as o-succinylbenzoic acid synthetase.
Probab=55.92 E-value=1.8e+02 Score=27.37 Aligned_cols=154 Identities=18% Similarity=0.102 Sum_probs=92.9
Q ss_pred CHHHHHHHHHHHHHcCCCeEeCccCcCCCChhHHHHHHHHhcCCCCCEEEEeeccccccCCCCcccCCCHHHHHHHHHHH
Q 018482 40 PDEVGISIIKHAFDQGITFFDTADVYGPNNANELLVGKALKQFPREKVQLATKFGVVKFDVSGLVINGTPEYVRACCEAS 119 (355)
Q Consensus 40 ~~~~~~~~l~~A~~~Gi~~~DtA~~Yg~~g~sE~~lg~~L~~~~R~~~~i~tK~~~~~~~~~~~~~~~s~~~i~~~~~~s 119 (355)
+.++..+.+..+.+.|++.|=.-- +. ..+.-.=+++++.- .++-|.-=.. ..++.+.++ .
T Consensus 132 ~~~~~~~~a~~~~~~Gf~~~KiKv--~~--~~d~~~v~~vr~~~-~~~~l~vDaN----------~~~~~~~a~-----~ 191 (324)
T TIGR01928 132 NDEQMLKQIESLKATGYKRIKLKI--TP--QIMHQLVKLRRLRF-PQIPLVIDAN----------ESYDLQDFP-----R 191 (324)
T ss_pred CHHHHHHHHHHHHHcCCcEEEEEe--CC--chhHHHHHHHHHhC-CCCcEEEECC----------CCCCHHHHH-----H
Confidence 456667777788899999874321 11 12222334444321 1222211111 124555431 1
Q ss_pred HHHcCCCcccEEEeccCCCCCCHHHHHHHHHHHHHcCccc-eeecCCCCHHHHHHHhhcCCceeeccccccccchh-hhc
Q 018482 120 LKRLDVEYIDLYYQHRVDTTVPIEDTMGELKKLVDEGKIK-YIGLSEASPDTIRRAHAVHPVTALQMEWSLWTRAI-EDE 197 (355)
Q Consensus 120 L~~L~~d~iDl~~lh~p~~~~~~~~~~~~L~~l~~~Gkir-~iGvS~~~~~~l~~~~~~~~~~~~q~~~n~~~~~~-~~~ 197 (355)
++.|. ..++.++..|-. .+-++.+.+|++...+. ..|=|.++...+..+++...++++|+...-.-.-. -..
T Consensus 192 ~~~l~--~~~~~~iEeP~~----~~~~~~~~~l~~~~~~pia~dEs~~~~~~~~~~~~~~~~dvi~~d~~~~GGit~~~~ 265 (324)
T TIGR01928 192 LKELD--RYQLLYIEEPFK----IDDLSMLDELAKGTITPICLDESITSLDDARNLIELGNVKVINIKPGRLGGLTEVQK 265 (324)
T ss_pred HHHHh--hCCCcEEECCCC----hhHHHHHHHHHhhcCCCEeeCCCcCCHHHHHHHHHcCCCCEEEeCcchhcCHHHHHH
Confidence 34443 236667776633 34467788888875554 56778889999999998888999998766432211 267
Q ss_pred hHHHHHHhCCcEEecccCCccc
Q 018482 198 IVPLCRELGIGIVPYSPLGRGF 219 (355)
Q Consensus 198 ~~~~~~~~gi~v~a~spl~~G~ 219 (355)
+...|+.+|+.++..+.+..|+
T Consensus 266 ~~~~A~~~gi~~~~~~~~es~i 287 (324)
T TIGR01928 266 AIETCREHGAKVWIGGMLETGI 287 (324)
T ss_pred HHHHHHHcCCeEEEcceEcccH
Confidence 8999999999999876665443
No 75
>cd03325 D-galactonate_dehydratase D-galactonate dehydratase catalyses the dehydration of galactonate to 2-keto-3-deoxygalactnate (KDGal), as part of the D-galactonate nonphosphorolytic catabolic Entner-Doudoroff pathway. D-galactonate dehydratase belongs to the enolase superfamily of enzymes, characterized by the presence of an enolate anion intermediate which is generated by abstraction of the alpha-proton of the carboxylate substrate by an active site residue and is stabilized by coordination to the essential Mg2+ ion.
Probab=55.68 E-value=69 Score=30.62 Aligned_cols=82 Identities=12% Similarity=0.087 Sum_probs=57.9
Q ss_pred ccEEEeccCCCCCCHHHHHHHHHHHHHcCccc-eeecCCCCHHHHHHHhhcCCceeeccccccccch-hhhchHHHHHHh
Q 018482 128 IDLYYQHRVDTTVPIEDTMGELKKLVDEGKIK-YIGLSEASPDTIRRAHAVHPVTALQMEWSLWTRA-IEDEIVPLCREL 205 (355)
Q Consensus 128 iDl~~lh~p~~~~~~~~~~~~L~~l~~~Gkir-~iGvS~~~~~~l~~~~~~~~~~~~q~~~n~~~~~-~~~~~~~~~~~~ 205 (355)
.++.++..|-.. +-++.+.+|++..-+. ..|=|.++...+..+++...++++|+.....-.- ....+.+.|+++
T Consensus 202 ~~i~~iEeP~~~----~d~~~~~~L~~~~~~pia~dEs~~~~~~~~~~~~~~~~d~v~~d~~~~GGit~~~~~~~lA~~~ 277 (352)
T cd03325 202 YRLLFIEEPVLP----ENVEALAEIAARTTIPIATGERLFSRWDFKELLEDGAVDIIQPDISHAGGITELKKIAAMAEAY 277 (352)
T ss_pred cCCcEEECCCCc----cCHHHHHHHHHhCCCCEEecccccCHHHHHHHHHhCCCCEEecCccccCCHHHHHHHHHHHHHc
Confidence 356666666432 2377888888775554 5566778999999988877789999875543211 126899999999
Q ss_pred CCcEEecc
Q 018482 206 GIGIVPYS 213 (355)
Q Consensus 206 gi~v~a~s 213 (355)
|+.++..+
T Consensus 278 gi~~~~h~ 285 (352)
T cd03325 278 DVALAPHC 285 (352)
T ss_pred CCcEeccC
Confidence 99998654
No 76
>PRK06361 hypothetical protein; Provisional
Probab=55.53 E-value=1.4e+02 Score=25.98 Aligned_cols=186 Identities=13% Similarity=0.093 Sum_probs=94.6
Q ss_pred HHHHHHHHHHHHcCCCeEeCccCcCCCChhHHHHHHH---HhcC---CCCCEEEEeeccccccCCCCcccCCCHHHHHHH
Q 018482 42 EVGISIIKHAFDQGITFFDTADVYGPNNANELLVGKA---LKQF---PREKVQLATKFGVVKFDVSGLVINGTPEYVRAC 115 (355)
Q Consensus 42 ~~~~~~l~~A~~~Gi~~~DtA~~Yg~~g~sE~~lg~~---L~~~---~R~~~~i~tK~~~~~~~~~~~~~~~s~~~i~~~ 115 (355)
....++++.|.+.|+..|=.+++... ..-...+-.+ .++. ..=+++...-+... .++. ...
T Consensus 10 ~~~~e~v~~A~~~Gl~~i~iTDH~~~-~~~~~~~~~~~~~~~~~~~~~~i~v~~GiE~~~~-----------~~~~-~~~ 76 (212)
T PRK06361 10 LIPSELVRRARVLGYRAIAITDHADA-SNLEEILEKLVRAAEELELYWDIEVIPGVELTHV-----------PPKL-IPK 76 (212)
T ss_pred CCHHHHHHHHHHcCCCEEEEecCCCC-ccHHHHHHHHHHHHHHHhhcCCCEEEEEEEEccc-----------Cchh-hch
Confidence 34688999999999999988887642 1111111111 1111 11122333332211 1122 233
Q ss_pred HHHHHHHcCCCcccEEEeccCCCCCCHHHHHHHHHHHHHcCccceeecCCCCHHHHHHHhhcCCceeeccccccccchhh
Q 018482 116 CEASLKRLDVEYIDLYYQHRVDTTVPIEDTMGELKKLVDEGKIKYIGLSEASPDTIRRAHAVHPVTALQMEWSLWTRAIE 195 (355)
Q Consensus 116 ~~~sL~~L~~d~iDl~~lh~p~~~~~~~~~~~~L~~l~~~Gkir~iGvS~~~~~~l~~~~~~~~~~~~q~~~n~~~~~~~ 195 (355)
+.+.+.+++ +|+..+|......+.. ...-.++.+.|.+.-+|=-..-...+.+++.... ..+.+..........
T Consensus 77 ~~~~~~~~~---~~~~svH~~~~~~~~~--~~~~~~a~~~~~~dvlaHpd~~~~~~~~~~~~~~-~~lEin~~~~~~~~~ 150 (212)
T PRK06361 77 LAKKARDLG---AEIVVVHGETIVEPVE--EGTNLAAIECEDVDILAHPGLITEEEAELAAENG-VFLEITARKGHSLTN 150 (212)
T ss_pred HHHHHHHCC---CEEEEECCCCcchhhh--hhhHHHHHhCCCCcEecCcchhhHHHHHHHHHcC-eEEEEECCCCcccch
Confidence 345555554 4667899543322111 1111456678876665543321122233333333 122221111122234
Q ss_pred hchHHHHHHhCCcEEecccCCcccCCCCCCCCCCCCccccccCCCCCCcchhhhHHHHHHHHHHHHHcCCCHHHHHHHHH
Q 018482 196 DEIVPLCRELGIGIVPYSPLGRGFFGGKASVESLPASSILTWHPRFSGENIDKNKILYLRLQKLAEKHECNPAQLALAWI 275 (355)
Q Consensus 196 ~~~~~~~~~~gi~v~a~spl~~G~L~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~la~~~~~s~~qlal~~~ 275 (355)
..+++.+++.|+.++.-|.... +......+.+..++++.|.+..++--.+.
T Consensus 151 ~~~l~~a~~~gi~vv~~SDaH~-----------------------------~~d~~~~~~~~~i~~~~gl~~~~v~~~~~ 201 (212)
T PRK06361 151 GHVARIAREAGAPLVINTDTHA-----------------------------PSDLITYEFARKVALGAGLTEKELEEALE 201 (212)
T ss_pred HHHHHHHHHhCCcEEEECCCCC-----------------------------HHHHHHHHHHHHHHcCCCCCHHHHHHHHH
Confidence 6789999999999877655541 11122356788888889998888755443
No 77
>cd03327 MR_like_2 Mandelate racemase (MR)-like subfamily of the enolase superfamily, subgroup 2. Enzymes of this subgroup share three conserved carboxylate ligands for the essential divalent metal ion (usually Mg2+), two aspartates and a glutamate, and conserved catalytic residues, a Lys-X-Lys motif and a conserved histidine-aspartate dyad. This subgroup's function is unknown.
Probab=53.96 E-value=71 Score=30.38 Aligned_cols=81 Identities=19% Similarity=0.165 Sum_probs=58.2
Q ss_pred ccEEEeccCCCCCCHHHHHHHHHHHHHcCccc-eeecCCCCHHHHHHHhhcCCceeeccccccccch-hhhchHHHHHHh
Q 018482 128 IDLYYQHRVDTTVPIEDTMGELKKLVDEGKIK-YIGLSEASPDTIRRAHAVHPVTALQMEWSLWTRA-IEDEIVPLCREL 205 (355)
Q Consensus 128 iDl~~lh~p~~~~~~~~~~~~L~~l~~~Gkir-~iGvS~~~~~~l~~~~~~~~~~~~q~~~n~~~~~-~~~~~~~~~~~~ 205 (355)
+++.++..|-+. +-++.+.+|.+...+. ..|=|.++...+..+++...++++|+..+..-.- ....+...|+++
T Consensus 197 ~~~~~iEeP~~~----~d~~~~~~l~~~~~~pIa~gE~~~~~~~~~~~i~~~a~d~i~~d~~~~GGit~~~~i~~~A~~~ 272 (341)
T cd03327 197 YELRWIEEPLIP----DDIEGYAELKKATGIPISTGEHEYTVYGFKRLLEGRAVDILQPDVNWVGGITELKKIAALAEAY 272 (341)
T ss_pred cCCccccCCCCc----cCHHHHHHHHhcCCCCeEeccCccCHHHHHHHHHcCCCCEEecCccccCCHHHHHHHHHHHHHc
Confidence 356666666432 3367777888876666 6677778999999999888899999876643211 126899999999
Q ss_pred CCcEEec
Q 018482 206 GIGIVPY 212 (355)
Q Consensus 206 gi~v~a~ 212 (355)
|+.+...
T Consensus 273 g~~~~~h 279 (341)
T cd03327 273 GVPVVPH 279 (341)
T ss_pred CCeeccc
Confidence 9997754
No 78
>COG2355 Zn-dependent dipeptidase, microsomal dipeptidase homolog [Amino acid transport and metabolism]
Probab=53.48 E-value=87 Score=29.56 Aligned_cols=106 Identities=13% Similarity=0.209 Sum_probs=73.2
Q ss_pred HHHHHHHHHHHcCCCeEeCccCcCCCChhHHHHHHHHhcCCCCCEEEEeeccccccCCCCcccCCCHHHHHHHHHHHHHH
Q 018482 43 VGISIIKHAFDQGITFFDTADVYGPNNANELLVGKALKQFPREKVQLATKFGVVKFDVSGLVINGTPEYVRACCEASLKR 122 (355)
Q Consensus 43 ~~~~~l~~A~~~Gi~~~DtA~~Yg~~g~sE~~lg~~L~~~~R~~~~i~tK~~~~~~~~~~~~~~~s~~~i~~~~~~sL~~ 122 (355)
.-+++|+.+-+.|| .+|.| +.+++.+-+++.- .+..+|+|-..... ..++.+.--.++++...++
T Consensus 150 ~Gk~lV~~~N~LgI-iiDlS------H~s~kt~~Dvl~~--s~~PviaSHSN~~a------l~~h~RNl~D~qlkaI~~~ 214 (313)
T COG2355 150 FGKELVREMNELGI-IIDLS------HLSDKTFWDVLDL--SKAPVVASHSNARA------LVDHPRNLSDEQLKAIAET 214 (313)
T ss_pred HHHHHHHHHHhcCC-EEEec------ccCCccHHHHHhc--cCCceEEecCCchh------ccCCCCCCCHHHHHHHHhc
Confidence 35899999999999 99998 4466677777773 34456666654332 2345566666777777777
Q ss_pred cCCCcccEEEeccC-----CCCCCHHHHHHHHHHHHHcCccceeecCC
Q 018482 123 LDVEYIDLYYQHRV-----DTTVPIEDTMGELKKLVDEGKIKYIGLSE 165 (355)
Q Consensus 123 L~~d~iDl~~lh~p-----~~~~~~~~~~~~L~~l~~~Gkir~iGvS~ 165 (355)
=|+ |.+.++-.. ....+++++.+.++.+++.+=++++|+.+
T Consensus 215 gGv--Igv~~~~~fl~~~~~~~atldd~v~hI~h~v~~~G~dhVglGs 260 (313)
T COG2355 215 GGV--IGVNFIPAFLRPGGAARATLDDLVRHIDHFVELVGIDHVGLGS 260 (313)
T ss_pred CCE--EEEEeehhhccCCCCCCCCHHHHHHHHHHHHHhcCcceeEecc
Confidence 664 344333322 23457899999999999988899999965
No 79
>PRK02083 imidazole glycerol phosphate synthase subunit HisF; Provisional
Probab=53.14 E-value=1.7e+02 Score=26.31 Aligned_cols=87 Identities=13% Similarity=0.063 Sum_probs=47.5
Q ss_pred HHHcCCCcccEEEeccCCCCCCHH-HHHHHHHHHHHcCccceeecCC-CCHHHHHHHhhcCCceeeccccccccchh-hh
Q 018482 120 LKRLDVEYIDLYYQHRVDTTVPIE-DTMGELKKLVDEGKIKYIGLSE-ASPDTIRRAHAVHPVTALQMEWSLWTRAI-ED 196 (355)
Q Consensus 120 L~~L~~d~iDl~~lh~p~~~~~~~-~~~~~L~~l~~~Gkir~iGvS~-~~~~~l~~~~~~~~~~~~q~~~n~~~~~~-~~ 196 (355)
+..+| +|-+.+|..+.+.... --|+.+.++.+.-.+.-|.-.. .+.+.+.++.+..+.+.+.+---+..... ..
T Consensus 162 ~~~~g---~~~ii~~~i~~~g~~~g~d~~~i~~~~~~~~ipvia~GGv~s~~d~~~~~~~~G~~gvivg~al~~~~~~~~ 238 (253)
T PRK02083 162 VEELG---AGEILLTSMDRDGTKNGYDLELTRAVSDAVNVPVIASGGAGNLEHFVEAFTEGGADAALAASIFHFGEITIG 238 (253)
T ss_pred HHHcC---CCEEEEcCCcCCCCCCCcCHHHHHHHHhhCCCCEEEECCCCCHHHHHHHHHhCCccEEeEhHHHHcCCCCHH
Confidence 34555 4566776654322111 1266666666654566664443 35778877776655555444211111111 26
Q ss_pred chHHHHHHhCCcE
Q 018482 197 EIVPLCRELGIGI 209 (355)
Q Consensus 197 ~~~~~~~~~gi~v 209 (355)
++.+.|++.||.+
T Consensus 239 ~~~~~~~~~~~~~ 251 (253)
T PRK02083 239 ELKAYLAEQGIPV 251 (253)
T ss_pred HHHHHHHHCCCcc
Confidence 7888999888864
No 80
>PF13378 MR_MLE_C: Enolase C-terminal domain-like; PDB: 3FCP_B 3P0W_D 3VFC_A 3VDG_A 3FJ4_B 3CT2_B 3DGB_A 3V3W_A 3V4B_A 3NO1_E ....
Probab=52.94 E-value=21 Score=27.66 Aligned_cols=54 Identities=24% Similarity=0.197 Sum_probs=40.5
Q ss_pred CCCCHHHHHHHhhcCCceeeccccccccch-hhhchHHHHHHhCCcEEecccCCcc
Q 018482 164 SEASPDTIRRAHAVHPVTALQMEWSLWTRA-IEDEIVPLCRELGIGIVPYSPLGRG 218 (355)
Q Consensus 164 S~~~~~~l~~~~~~~~~~~~q~~~n~~~~~-~~~~~~~~~~~~gi~v~a~spl~~G 218 (355)
|.++...++++++...++++|+.....-.- ....+.+.|+++|+.+...+. .++
T Consensus 3 ~~~~~~~~~~li~~~a~d~~~~~~~~~GGit~~~~i~~~A~~~gi~~~~h~~-~~~ 57 (111)
T PF13378_consen 3 SLFSLHDFRRLIEAGAVDIVQIDPTRCGGITEALRIAALAEAHGIPVMPHSM-ESG 57 (111)
T ss_dssp TSSSHHHHHHHHHTTSCSEEEEBHHHHTSHHHHHHHHHHHHHTT-EEEEBSS-SSH
T ss_pred CCCCHHHHHHHHHcCCCCEEEeCchhcCCHHHHHHHHHHHHHhCCCEEecCC-CCc
Confidence 567888999999988889999875543211 126899999999999999887 544
No 81
>cd04734 OYE_like_3_FMN Old yellow enzyme (OYE)-related FMN binding domain, group 3. Each monomer of OYE contains FMN as a non-covalently bound cofactor, uses NADPH as a reducing agent with oxygens, quinones, and alpha,beta-unsaturated aldehydes and ketones, and can act as electron acceptors in the catalytic reaction. Other members of OYE family include trimethylamine dehydrogenase, 2,4-dienoyl-CoA reductase, enoate reductase, pentaerythriol tetranitrate reductase, xenobiotic reductase, and morphinone reductase. One member of this subgroup, the Sinorhizobium meliloti stachydrine utilization protein stcD, has been idenified as a putative N-methylproline demethylase.
Probab=52.44 E-value=2.2e+02 Score=27.19 Aligned_cols=139 Identities=13% Similarity=0.051 Sum_probs=73.0
Q ss_pred CCCHHHHHHHHH-------HHHHcCCCeEeCcc-------------------CcCCCChhHH---HHHHHHhc---CCCC
Q 018482 38 PVPDEVGISIIK-------HAFDQGITFFDTAD-------------------VYGPNNANEL---LVGKALKQ---FPRE 85 (355)
Q Consensus 38 ~~~~~~~~~~l~-------~A~~~Gi~~~DtA~-------------------~Yg~~g~sE~---~lg~~L~~---~~R~ 85 (355)
.++.++..++++ .|.++|+..||--- .|| |.-|. ++-+.++. .-..
T Consensus 130 ~mt~~eI~~ii~~f~~AA~ra~~aGfDgVeih~ahGyLl~qFlsp~~N~RtD~yG--GslenR~r~~~eiv~~ir~~vg~ 207 (343)
T cd04734 130 AMEEEDIEEIIAAFADAARRCQAGGLDGVELQAAHGHLIDQFLSPLTNRRTDEYG--GSLENRMRFLLEVLAAVRAAVGP 207 (343)
T ss_pred cCCHHHHHHHHHHHHHHHHHHHHcCCCEEEEccccchHHHHhhCCCcCCCCCcCC--CCHHHHhHHHHHHHHHHHHHcCC
Confidence 356666555544 44679999887332 244 43342 22223322 2235
Q ss_pred CEEEEeeccccccCCCCcccCCCHHHHHHHHHHHHHHcCCCcccEEEeccCCCC-------------CCHHHHHHHHHHH
Q 018482 86 KVQLATKFGVVKFDVSGLVINGTPEYVRACCEASLKRLDVEYIDLYYQHRVDTT-------------VPIEDTMGELKKL 152 (355)
Q Consensus 86 ~~~i~tK~~~~~~~~~~~~~~~s~~~i~~~~~~sL~~L~~d~iDl~~lh~p~~~-------------~~~~~~~~~L~~l 152 (355)
++.|..|++...... ...+.+... .+-+.|+..| .+|++-||..... ..-.-.|+....+
T Consensus 208 ~~~v~iRl~~~~~~~----~G~~~~e~~-~~~~~l~~~G--~vd~i~vs~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~i 280 (343)
T cd04734 208 DFIVGIRISGDEDTE----GGLSPDEAL-EIAARLAAEG--LIDYVNVSAGSYYTLLGLAHVVPSMGMPPGPFLPLAARI 280 (343)
T ss_pred CCeEEEEeehhhccC----CCCCHHHHH-HHHHHHHhcC--CCCEEEeCCCCCCcccccccccCCCCCCcchhHHHHHHH
Confidence 677888887543211 113444433 3344555565 2444445322110 0011135555666
Q ss_pred HHcCccceeecCCC-CHHHHHHHhhcCCceeecc
Q 018482 153 VDEGKIKYIGLSEA-SPDTIRRAHAVHPVTALQM 185 (355)
Q Consensus 153 ~~~Gkir~iGvS~~-~~~~l~~~~~~~~~~~~q~ 185 (355)
++.=++--|++.+. +++.++++++....+.+.+
T Consensus 281 k~~~~ipvi~~G~i~~~~~~~~~l~~~~~D~V~~ 314 (343)
T cd04734 281 KQAVDLPVFHAGRIRDPAEAEQALAAGHADMVGM 314 (343)
T ss_pred HHHcCCCEEeeCCCCCHHHHHHHHHcCCCCeeee
Confidence 66545667777764 7788888887776677665
No 82
>PRK05588 histidinol-phosphatase; Provisional
Probab=52.14 E-value=1.8e+02 Score=26.21 Aligned_cols=105 Identities=15% Similarity=0.218 Sum_probs=57.2
Q ss_pred HHHHHHHHHHHHcCCCeEeCccCcCCC---C-----hhHHHHHHHHhcCCCCCEEEEeeccccccCCCCcccCCCHHHHH
Q 018482 42 EVGISIIKHAFDQGITFFDTADVYGPN---N-----ANELLVGKALKQFPREKVQLATKFGVVKFDVSGLVINGTPEYVR 113 (355)
Q Consensus 42 ~~~~~~l~~A~~~Gi~~~DtA~~Yg~~---g-----~sE~~lg~~L~~~~R~~~~i~tK~~~~~~~~~~~~~~~s~~~i~ 113 (355)
...++++++|.+.|+..+ .+++.... . .-+..+.. +++.+..++.+..-++ +.++ ..
T Consensus 16 ~~~ee~v~~A~~~Gl~~~-~TdH~~~~~~~~~~~~~~~~~y~~~-i~~~~~~~I~~GiE~~------------~~~~-~~ 80 (255)
T PRK05588 16 MKIEEAIKKAKENNLGII-ITEHMDLNLPDKNKFCFDVDSYFNK-YSKYRNNKLLLGIELG------------MEKD-LI 80 (255)
T ss_pred cCHHHHHHHHHHcCCCEE-EeCCCCCCCCCccccccCHHHHHHH-HHHHhcCCcceEEEec------------ccCC-CH
Confidence 457899999999999998 77663110 0 11122211 1212223444433332 2222 35
Q ss_pred HHHHHHHHHcCCCcccEEEeccCCCC----------CCHHH----HHHHHHHHHH-cCccceee
Q 018482 114 ACCEASLKRLDVEYIDLYYQHRVDTT----------VPIED----TMGELKKLVD-EGKIKYIG 162 (355)
Q Consensus 114 ~~~~~sL~~L~~d~iDl~~lh~p~~~----------~~~~~----~~~~L~~l~~-~Gkir~iG 162 (355)
..+++.|++...||+ +.-+|+.+.. .+.++ -++.+.++++ .|++..||
T Consensus 81 ~~~~~~l~~~~~D~v-igSvH~~~~~~~~~~~~~~~~~~~~~~~~Y~~~~~~~v~~~~~~dvlg 143 (255)
T PRK05588 81 EENKELINKYEFDYV-IGSIHLVDKLDLYLDEFYKDKSKEEAYHIYFENMLKCLEKYDFIDSLG 143 (255)
T ss_pred HHHHHHHhhCCCCeE-EEeEEeeCCCcchHHHHhcCCCHHHHHHHHHHHHHHHHHhcCCCCCcc
Confidence 566778888888887 7889985421 12233 3466666666 46554444
No 83
>PRK14017 galactonate dehydratase; Provisional
Probab=51.84 E-value=1.1e+02 Score=29.63 Aligned_cols=84 Identities=14% Similarity=0.115 Sum_probs=60.7
Q ss_pred ccEEEeccCCCCCCHHHHHHHHHHHHHcCccc-eeecCCCCHHHHHHHhhcCCceeeccccccccc-hhhhchHHHHHHh
Q 018482 128 IDLYYQHRVDTTVPIEDTMGELKKLVDEGKIK-YIGLSEASPDTIRRAHAVHPVTALQMEWSLWTR-AIEDEIVPLCREL 205 (355)
Q Consensus 128 iDl~~lh~p~~~~~~~~~~~~L~~l~~~Gkir-~iGvS~~~~~~l~~~~~~~~~~~~q~~~n~~~~-~~~~~~~~~~~~~ 205 (355)
+++.++..|-... -++.+.+|.+...+. ..|=|.++...++.+++...++++|+..+..-. ..-..+.+.|+++
T Consensus 203 ~~~~~iEeP~~~~----d~~~~~~L~~~~~~pIa~dEs~~~~~~~~~li~~~a~d~v~~d~~~~GGit~~~~ia~~A~~~ 278 (382)
T PRK14017 203 YRPMFIEEPVLPE----NAEALPEIAAQTSIPIATGERLFSRWDFKRVLEAGGVDIIQPDLSHAGGITECRKIAAMAEAY 278 (382)
T ss_pred cCCCeEECCCCcC----CHHHHHHHHhcCCCCEEeCCccCCHHHHHHHHHcCCCCeEecCccccCCHHHHHHHHHHHHHc
Confidence 4556666663322 257788888876665 567788899999999998889999987664321 1126899999999
Q ss_pred CCcEEecccC
Q 018482 206 GIGIVPYSPL 215 (355)
Q Consensus 206 gi~v~a~spl 215 (355)
||.++..+..
T Consensus 279 gi~~~~h~~~ 288 (382)
T PRK14017 279 DVALAPHCPL 288 (382)
T ss_pred CCeEeecCCC
Confidence 9999887654
No 84
>PF05913 DUF871: Bacterial protein of unknown function (DUF871); InterPro: IPR008589 This family consists of several conserved hypothetical proteins from bacteria and archaea. The function of this family is unknown though a number are annotated as outer surface proteins.; PDB: 2P0O_A 1X7F_A.
Probab=51.57 E-value=22 Score=34.19 Aligned_cols=211 Identities=17% Similarity=0.094 Sum_probs=97.3
Q ss_pred CHHHHHHHHHHHHHcCCCeEeCccCcCCCChhHH---HHHHHHhcCCCCCEEEEeeccccccCCCCcccCCCHHHHHHHH
Q 018482 40 PDEVGISIIKHAFDQGITFFDTADVYGPNNANEL---LVGKALKQFPREKVQLATKFGVVKFDVSGLVINGTPEYVRACC 116 (355)
Q Consensus 40 ~~~~~~~~l~~A~~~Gi~~~DtA~~Yg~~g~sE~---~lg~~L~~~~R~~~~i~tK~~~~~~~~~~~~~~~s~~~i~~~~ 116 (355)
+.++..+.|+.|.++|+..+-|+=+.-. +..+. .+.+.++......+.|..=+.+..-. ....+.+.+
T Consensus 12 ~~~~~~~yi~~a~~~Gf~~iFTSL~ipe-~~~~~~~~~~~~l~~~a~~~~~~v~~Disp~~l~----~lg~~~~dl---- 82 (357)
T PF05913_consen 12 SFEENKAYIEKAAKYGFKRIFTSLHIPE-DDPEDYLERLKELLKLAKELGMEVIADISPKVLK----KLGISYDDL---- 82 (357)
T ss_dssp -HHHHHHHHHHHHCTTEEEEEEEE----------HHHHHHHHHHHHHHCT-EEEEEE-CCHHH----TTT-BTTBT----
T ss_pred CHHHHHHHHHHHHHCCCCEEECCCCcCC-CCHHHHHHHHHHHHHHHHHCCCEEEEECCHHHHH----HcCCCHHHH----
Confidence 6788999999999999999999966643 21222 22223332233445554444322100 000111111
Q ss_pred HHHHHHcCCCcccEEEeccCCCCCCHHHHHHHHHHHHHcCccceeecCCCCHHHHHHHhhcC-Cceeeccccccccchh-
Q 018482 117 EASLKRLDVEYIDLYYQHRVDTTVPIEDTMGELKKLVDEGKIKYIGLSEASPDTIRRAHAVH-PVTALQMEWSLWTRAI- 194 (355)
Q Consensus 117 ~~sL~~L~~d~iDl~~lh~p~~~~~~~~~~~~L~~l~~~Gkir~iGvS~~~~~~l~~~~~~~-~~~~~q~~~n~~~~~~- 194 (355)
..++.||++. +=|.. -.+ .+.+.+|-+.|.--.+=.|+.+.+.+..+.+.. .+.-+..-+|...+..
T Consensus 83 -~~~~~lGi~~---lRlD~---Gf~----~~~ia~ls~ng~~I~LNASti~~~~l~~L~~~~~~~~~i~a~HNfYPr~~T 151 (357)
T PF05913_consen 83 -SFFKELGIDG---LRLDY---GFS----GEEIAKLSKNGIKIELNASTITEEELDELIKYGANFSNIIACHNFYPRPYT 151 (357)
T ss_dssp -HHHHHHT-SE---EEESS---S-S----CHHHHHHTTT-SEEEEETTT--CCHHHHHCCTT--GGGEEEE---B-STT-
T ss_pred -HHHHHcCCCE---EEECC---CCC----HHHHHHHHhCCCEEEEECCCCChHHHHHHHHhcCCHHHeEEEecccCCCCC
Confidence 1345555432 22221 111 233444555566555556776777888887764 3455555556555432
Q ss_pred ------hhchHHHHHHhCCcEEecccCCcccCCCCCCCCCCCCccccccCCCCCCcchhhhHHHHHHHHHHHHHcCCCHH
Q 018482 195 ------EDEIVPLCRELGIGIVPYSPLGRGFFGGKASVESLPASSILTWHPRFSGENIDKNKILYLRLQKLAEKHECNPA 268 (355)
Q Consensus 195 ------~~~~~~~~~~~gi~v~a~spl~~G~L~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~la~~~~~s~~ 268 (355)
-.+.-.+.++.|+.+.|+-|-.. .+.|. -....|+ .++|---+.
T Consensus 152 GLs~~~f~~~n~~~k~~gi~~~AFI~g~~-~~rGP-l~~GLPT----------------------------lE~hR~~~p 201 (357)
T PF05913_consen 152 GLSEEFFIEKNQLLKEYGIKTAAFIPGDE-NKRGP-LYEGLPT----------------------------LEKHRNLPP 201 (357)
T ss_dssp SB-HHHHHHHHHHHHHTT-EEEEEE--SS-S-BTT-T-S--BS----------------------------BGGGTTS-H
T ss_pred CCCHHHHHHHHHHHHHCCCcEEEEecCCC-cccCC-ccCCCCc----------------------------cHHHcCCCH
Confidence 14455667889999999888763 22222 0001111 112222344
Q ss_pred HHHHHHHhhCCCCeeeecCCC--CHHHHHHHHhc
Q 018482 269 QLALAWILHQGDDVAPIPGTT--KIKNLDDNIGS 300 (355)
Q Consensus 269 qlal~~~l~~~~v~~vIvG~~--~~~~l~~nl~a 300 (355)
.++.+.+...+.|+-|++|=. +.+.++.....
T Consensus 202 ~~aa~~L~~~~~iD~V~IGD~~~s~~el~~~~~~ 235 (357)
T PF05913_consen 202 YAAALELFALGLIDDVIIGDPFASEEELKQLAQY 235 (357)
T ss_dssp HHHHHHHHHTTT--EEEE-SC---HHHHHHHHHC
T ss_pred HHHHHHHHhcCCCCEEEECCCcCCHHHHHHHHHH
Confidence 567778888888899999976 55566665544
No 85
>TIGR02311 HpaI 2,4-dihydroxyhept-2-ene-1,7-dioic acid aldolase. This model represents the aldolase which performs the final step unique to the 4-hydroxyphenylacetic acid catabolism pathway in which 2,4-dihydroxyhept-2-ene-1,7-dioic acid is split into pyruvate and succinate-semialdehyde. The gene for enzyme is generally found adjacent to other genes for this pathway organized into an operon.
Probab=51.54 E-value=1.9e+02 Score=26.24 Aligned_cols=66 Identities=15% Similarity=0.050 Sum_probs=38.3
Q ss_pred HHHHHHcCccceeec--CCCCHHHHHHHhhc-CCceeeccccccccchhhhchHHHHHHhCCcEEecccC
Q 018482 149 LKKLVDEGKIKYIGL--SEASPDTIRRAHAV-HPVTALQMEWSLWTRAIEDEIVPLCRELGIGIVPYSPL 215 (355)
Q Consensus 149 L~~l~~~Gkir~iGv--S~~~~~~l~~~~~~-~~~~~~q~~~n~~~~~~~~~~~~~~~~~gi~v~a~spl 215 (355)
+.+..++|+. .+|+ ...++..++.+... ..+.++-++.+++.......++..++..|..++..-|-
T Consensus 3 lk~~l~~g~~-~~g~~~~~~~p~~~e~~~~~g~D~v~iDlEH~~~~~~~~~~~~~a~~~~g~~~~VRv~~ 71 (249)
T TIGR02311 3 FKQALKEGQP-QIGLWLGLADPYAAEICAGAGFDWLLIDGEHAPNDVRTILSQLQALAPYPSSPVVRPAI 71 (249)
T ss_pred HHHHHHCCCc-eEEEEEeCCCcHHHHHHHhcCCCEEEEeccCCCCCHHHHHHHHHHHHhcCCCcEEECCC
Confidence 4455566775 3443 33355555554443 44556666888876543355677777778777776443
No 86
>cd02932 OYE_YqiM_FMN Old yellow enzyme (OYE) YqjM-like FMN binding domain. YqjM is involved in the oxidative stress response of Bacillus subtilis. Like the other OYE members, each monomer of YqjM contains FMN as a non-covalently bound cofactor and uses NADPH as a reducing agent. The YqjM enzyme exists as a homotetramer that is assembled as a dimer of catalytically dependent dimers, while other OYE members exist only as monomers or dimers. Moreover, the protein displays a shared active site architecture where an arginine finger at the COOH terminus of one monomer extends into the active site of the adjacent monomer and is directly involved in substrate recognition. Another remarkable difference in the binding of the ligand in YqjM is represented by the contribution of the NH2-terminal tyrosine instead of a COOH-terminal tyrosine in OYE and its homologs.
Probab=51.15 E-value=2.2e+02 Score=26.93 Aligned_cols=94 Identities=15% Similarity=0.138 Sum_probs=53.8
Q ss_pred CCCEEEEeeccccccCCCCcccCCCHHHHHHHHHHHHHHcCCCcccEEEeccCC--CC--CCH--HHHHHHHHHHHHcCc
Q 018482 84 REKVQLATKFGVVKFDVSGLVINGTPEYVRACCEASLKRLDVEYIDLYYQHRVD--TT--VPI--EDTMGELKKLVDEGK 157 (355)
Q Consensus 84 R~~~~i~tK~~~~~~~~~~~~~~~s~~~i~~~~~~sL~~L~~d~iDl~~lh~p~--~~--~~~--~~~~~~L~~l~~~Gk 157 (355)
.+++.|..|+....... ...+.+... .+-+.|+..|+|+++ +|.-. .. .+. ...++.++++++.=.
T Consensus 219 G~d~~v~vri~~~~~~~----~g~~~~e~~-~ia~~Le~~gvd~ie---v~~g~~~~~~~~~~~~~~~~~~~~~ir~~~~ 290 (336)
T cd02932 219 PEDKPLFVRISATDWVE----GGWDLEDSV-ELAKALKELGVDLID---VSSGGNSPAQKIPVGPGYQVPFAERIRQEAG 290 (336)
T ss_pred CCCceEEEEEcccccCC----CCCCHHHHH-HHHHHHHHcCCCEEE---ECCCCCCcccccCCCccccHHHHHHHHhhCC
Confidence 35677888887532111 123444333 334456677765554 44211 00 111 123466667777666
Q ss_pred cceeecCCC-CHHHHHHHhhcCCceeecc
Q 018482 158 IKYIGLSEA-SPDTIRRAHAVHPVTALQM 185 (355)
Q Consensus 158 ir~iGvS~~-~~~~l~~~~~~~~~~~~q~ 185 (355)
+--++.... +++.++++++....+.+++
T Consensus 291 iPVi~~G~i~t~~~a~~~l~~g~aD~V~~ 319 (336)
T cd02932 291 IPVIAVGLITDPEQAEAILESGRADLVAL 319 (336)
T ss_pred CCEEEeCCCCCHHHHHHHHHcCCCCeehh
Confidence 777777775 7888888888777787776
No 87
>PRK13523 NADPH dehydrogenase NamA; Provisional
Probab=50.56 E-value=2.3e+02 Score=26.98 Aligned_cols=137 Identities=12% Similarity=0.075 Sum_probs=70.1
Q ss_pred CCHHHHHHHHH-------HHHHcCCCeEeC--c-----------------cCcCCCChhH---HHHHHHHhcCCC-CCEE
Q 018482 39 VPDEVGISIIK-------HAFDQGITFFDT--A-----------------DVYGPNNANE---LLVGKALKQFPR-EKVQ 88 (355)
Q Consensus 39 ~~~~~~~~~l~-------~A~~~Gi~~~Dt--A-----------------~~Yg~~g~sE---~~lg~~L~~~~R-~~~~ 88 (355)
++.++.+++++ .|.++|+..++- | +.|| |+-| +++-+.++..++ -++-
T Consensus 132 mt~eeI~~ii~~f~~aA~~a~~aGfDgVeih~ahGyLl~qFlSp~~N~RtD~yG--GslenR~Rf~~eii~~ir~~~~~~ 209 (337)
T PRK13523 132 MTKEQIKETVLAFKQAAVRAKEAGFDVIEIHGAHGYLINEFLSPLSNKRTDEYG--GSPENRYRFLREIIDAVKEVWDGP 209 (337)
T ss_pred CCHHHHHHHHHHHHHHHHHHHHcCCCEEEEccccchHHHHhcCCccCCcCCCCC--CCHHHHHHHHHHHHHHHHHhcCCC
Confidence 57777666655 446799999884 2 2344 4333 233333333211 1344
Q ss_pred EEeeccccccCCCCcccCCCHHHHHHHHHHHHHHcCCCcccEEEeccCCC---CCC--HHHHHHHHHHHHHcCccceeec
Q 018482 89 LATKFGVVKFDVSGLVINGTPEYVRACCEASLKRLDVEYIDLYYQHRVDT---TVP--IEDTMGELKKLVDEGKIKYIGL 163 (355)
Q Consensus 89 i~tK~~~~~~~~~~~~~~~s~~~i~~~~~~sL~~L~~d~iDl~~lh~p~~---~~~--~~~~~~~L~~l~~~Gkir~iGv 163 (355)
|.-|+....... ...+.+...+ +-+.|+..|+|+++ +|.-.. ... ....|+..+++++.-++--+++
T Consensus 210 v~vRis~~d~~~----~G~~~~e~~~-i~~~l~~~gvD~i~---vs~g~~~~~~~~~~~~~~~~~~~~ik~~~~ipVi~~ 281 (337)
T PRK13523 210 LFVRISASDYHP----GGLTVQDYVQ-YAKWMKEQGVDLID---VSSGAVVPARIDVYPGYQVPFAEHIREHANIATGAV 281 (337)
T ss_pred eEEEecccccCC----CCCCHHHHHH-HHHHHHHcCCCEEE---eCCCCCCCCCCCCCccccHHHHHHHHhhcCCcEEEe
Confidence 556665432111 1133333322 33445556654444 444221 001 1113556666777666776777
Q ss_pred CCC-CHHHHHHHhhcCCceeecc
Q 018482 164 SEA-SPDTIRRAHAVHPVTALQM 185 (355)
Q Consensus 164 S~~-~~~~l~~~~~~~~~~~~q~ 185 (355)
... +++..+++++....|.+.+
T Consensus 282 G~i~~~~~a~~~l~~g~~D~V~~ 304 (337)
T PRK13523 282 GLITSGAQAEEILQNNRADLIFI 304 (337)
T ss_pred CCCCCHHHHHHHHHcCCCChHHh
Confidence 664 6777778877766666555
No 88
>COG1168 MalY Bifunctional PLP-dependent enzyme with beta-cystathionase and maltose regulon repressor activities [Amino acid transport and metabolism]
Probab=50.26 E-value=2.5e+02 Score=27.27 Aligned_cols=27 Identities=22% Similarity=0.441 Sum_probs=19.1
Q ss_pred hchHHHHHHhCCcEEecccCCcccCCC
Q 018482 196 DEIVPLCRELGIGIVPYSPLGRGFFGG 222 (355)
Q Consensus 196 ~~~~~~~~~~gi~v~a~spl~~G~L~g 222 (355)
..+.+.|++|||.||+-.--+-=.|.|
T Consensus 181 ~~i~elc~kh~v~VISDEIHaDlv~~g 207 (388)
T COG1168 181 RKIAELCLRHGVRVISDEIHADLVLGG 207 (388)
T ss_pred HHHHHHHHHcCCEEEeecccccccccC
Confidence 678888999999999755444334445
No 89
>PRK05692 hydroxymethylglutaryl-CoA lyase; Provisional
Probab=49.71 E-value=45 Score=31.06 Aligned_cols=102 Identities=10% Similarity=0.083 Sum_probs=59.5
Q ss_pred CCHHHHHHHHHHHHHHcCCCcccEEEeccCCCCCCHHHHHHHHHHHHHcCccceeecCCCCHHHHHHHhhcCCceeeccc
Q 018482 107 GTPEYVRACCEASLKRLDVEYIDLYYQHRVDTTVPIEDTMGELKKLVDEGKIKYIGLSEASPDTIRRAHAVHPVTALQME 186 (355)
Q Consensus 107 ~s~~~i~~~~~~sL~~L~~d~iDl~~lh~p~~~~~~~~~~~~L~~l~~~Gkir~iGvS~~~~~~l~~~~~~~~~~~~q~~ 186 (355)
++.+. +..+-+.|.++|+++|.+-...+|...-...+.++.+..+.+...++...+. .+...++.+.+. .++.+.+-
T Consensus 23 ~s~e~-k~~ia~~L~~~Gv~~IEvgsf~~p~~~p~~~d~~e~~~~l~~~~~~~~~~l~-~~~~~ie~A~~~-g~~~v~i~ 99 (287)
T PRK05692 23 IPTAD-KIALIDRLSAAGLSYIEVASFVSPKWVPQMADAAEVMAGIQRRPGVTYAALT-PNLKGLEAALAA-GADEVAVF 99 (287)
T ss_pred cCHHH-HHHHHHHHHHcCCCEEEeCCCcCcccccccccHHHHHHhhhccCCCeEEEEe-cCHHHHHHHHHc-CCCEEEEE
Confidence 44443 4556677999999999987555553222223345666666554446655554 467778777765 22333332
Q ss_pred ccc---------ccch---h--hhchHHHHHHhCCcEEe
Q 018482 187 WSL---------WTRA---I--EDEIVPLCRELGIGIVP 211 (355)
Q Consensus 187 ~n~---------~~~~---~--~~~~~~~~~~~gi~v~a 211 (355)
.+. -... . -.+.+++++++|+.+.+
T Consensus 100 ~~~s~~~~~~n~~~~~~e~l~~~~~~v~~ak~~g~~v~~ 138 (287)
T PRK05692 100 ASASEAFSQKNINCSIAESLERFEPVAEAAKQAGVRVRG 138 (287)
T ss_pred EecCHHHHHHHhCCCHHHHHHHHHHHHHHHHHcCCEEEE
Confidence 221 1110 0 15789999999998864
No 90
>PRK09856 fructoselysine 3-epimerase; Provisional
Probab=49.67 E-value=1.1e+02 Score=27.78 Aligned_cols=51 Identities=14% Similarity=0.086 Sum_probs=34.8
Q ss_pred hchHHHHHHhCCcEEecccCCcccCCCCCCCCCCCCccccccCCCCCCcchhhhHHHHHHHHHHHHHcCC
Q 018482 196 DEIVPLCRELGIGIVPYSPLGRGFFGGKASVESLPASSILTWHPRFSGENIDKNKILYLRLQKLAEKHEC 265 (355)
Q Consensus 196 ~~~~~~~~~~gi~v~a~spl~~G~L~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~la~~~~~ 265 (355)
...+++|+..|...+...|...|... .....++.....++.+.++|+++|+
T Consensus 93 ~~~i~~a~~lGa~~i~~~~~~~~~~~-------------------~~~~~~~~~~~~l~~l~~~a~~~gv 143 (275)
T PRK09856 93 KLAMDMAKEMNAGYTLISAAHAGYLT-------------------PPNVIWGRLAENLSELCEYAENIGM 143 (275)
T ss_pred HHHHHHHHHhCCCEEEEcCCCCCCCC-------------------CHHHHHHHHHHHHHHHHHHHHHcCC
Confidence 56789999999999877765433100 0112245566778888889998887
No 91
>PF11020 DUF2610: Domain of unknown function (DUF2610); InterPro: IPR021277 This family is conserved in Proteobacteria. One member is annotated as being elongation factor P but this could not be confirmed.
Probab=49.27 E-value=40 Score=24.81 Aligned_cols=29 Identities=21% Similarity=0.180 Sum_probs=24.9
Q ss_pred hhhHHHHHHHHHHHHHcCCCHHHHHHHHH
Q 018482 247 DKNKILYLRLQKLAEKHECNPAQLALAWI 275 (355)
Q Consensus 247 ~~~~~~~~~l~~la~~~~~s~~qlal~~~ 275 (355)
++..+.+.+|.++|++.|++.+++|.-.+
T Consensus 48 ~~V~~sl~kL~~La~~N~v~feeLc~YAL 76 (82)
T PF11020_consen 48 EKVMDSLSKLYKLAKENNVSFEELCVYAL 76 (82)
T ss_pred HHHHHHHHHHHHHHHHcCCCHHHHHHHHH
Confidence 46788899999999999999999986543
No 92
>TIGR02026 BchE magnesium-protoporphyrin IX monomethyl ester anaerobic oxidative cyclase. This model respresents the cobalamin-dependent oxidative cyclase responsible for forming the distinctive E-ring of the chlorin ring system under anaerobic conditions. This step is essential in the biosynthesis of both bacteriochlorophyll and chlorophyll under anaerobic conditions (a separate enzyme, AcsF, acts under aerobic conditions). This model identifies two clades of sequences, one from photosynthetic, non-cyanobacterial bacteria and another including Synechocystis and several non-photosynthetic bacteria. The function of the Synechocystis gene is supported by gene clustering with other photosynthetic genes, so the purpose of the gene in the non-photosynthetic bacteria is uncertain. Note that homologs of this gene are not found in plants which rely solely on the aerobic cyclase.
Probab=48.88 E-value=2e+02 Score=28.96 Aligned_cols=67 Identities=7% Similarity=0.069 Sum_probs=42.1
Q ss_pred CCCHHHHHHHHHHHHHcCccce----eecCCCCHHHHHHHhhc---CCceeeccccccccchhhhchHHHHHHhCC
Q 018482 139 TVPIEDTMGELKKLVDEGKIKY----IGLSEASPDTIRRAHAV---HPVTALQMEWSLWTRAIEDEIVPLCRELGI 207 (355)
Q Consensus 139 ~~~~~~~~~~L~~l~~~Gkir~----iGvS~~~~~~l~~~~~~---~~~~~~q~~~n~~~~~~~~~~~~~~~~~gi 207 (355)
....++..++++.+++.|..-. +|+-+.+.+.+++.++. .+++.++ ++.+...+...+++.+++.+.
T Consensus 319 ~~t~~~~~~ai~~l~~~Gi~~~~~~I~G~P~et~e~~~~t~~~~~~l~~~~~~--~~~~tP~PGT~l~~~~~~~~~ 392 (497)
T TIGR02026 319 GTTTSTNKEAIRLLRQHNILSEAQFITGFENETDETFEETYRQLLDWDPDQAN--WLMYTPWPFTSLFGELSDRVE 392 (497)
T ss_pred CCCHHHHHHHHHHHHHCCCcEEEEEEEECCCCCHHHHHHHHHHHHHcCCCceE--EEEecCCCCcHHHHHHHhhcc
Confidence 3456788899999999987333 36667777776655443 3444433 344444444567777777653
No 93
>PLN02363 phosphoribosylanthranilate isomerase
Probab=47.34 E-value=57 Score=29.83 Aligned_cols=66 Identities=15% Similarity=0.220 Sum_probs=44.3
Q ss_pred HHcCCCcccEEEeccCCCCCCHHHHHHHHHHHHHcCccceeecC-CCCHHHHHHHhhcCCceeecccc
Q 018482 121 KRLDVEYIDLYYQHRVDTTVPIEDTMGELKKLVDEGKIKYIGLS-EASPDTIRRAHAVHPVTALQMEW 187 (355)
Q Consensus 121 ~~L~~d~iDl~~lh~p~~~~~~~~~~~~L~~l~~~Gkir~iGvS-~~~~~~l~~~~~~~~~~~~q~~~ 187 (355)
.++|.|++-+++..........+.+-+..+. .....++.+||. +.+.+++.+.++..+++++|++-
T Consensus 64 ~~~GaD~iGfIf~~~SpR~Vs~e~a~~I~~~-l~~~~~~~VgVfv~~~~~~I~~~~~~~~ld~VQLHG 130 (256)
T PLN02363 64 VEAGADFIGMILWPKSKRSISLSVAKEISQV-AREGGAKPVGVFVDDDANTILRAADSSDLELVQLHG 130 (256)
T ss_pred HHcCCCEEEEecCCCCCCcCCHHHHHHHHHh-ccccCccEEEEEeCCCHHHHHHHHHhcCCCEEEECC
Confidence 4589999988754433333444444333333 322246679985 77899999999999999999964
No 94
>PRK08255 salicylyl-CoA 5-hydroxylase; Reviewed
Probab=46.13 E-value=4e+02 Score=28.50 Aligned_cols=157 Identities=13% Similarity=0.120 Sum_probs=83.9
Q ss_pred CCHHHHHHHHH-------HHHHcCCCeEeC--c-----------------cCcCCCChhH---HHHHHHHhc---CCCCC
Q 018482 39 VPDEVGISIIK-------HAFDQGITFFDT--A-----------------DVYGPNNANE---LLVGKALKQ---FPREK 86 (355)
Q Consensus 39 ~~~~~~~~~l~-------~A~~~Gi~~~Dt--A-----------------~~Yg~~g~sE---~~lg~~L~~---~~R~~ 86 (355)
++.++..++++ .|.++|+..||- | +.|| |+-| +++-+.++. .-..+
T Consensus 541 mt~~eI~~~i~~f~~aA~~a~~aGfDgveih~ahGyLl~qFlsp~~N~RtD~yG--GslenR~r~~~eiv~~ir~~~~~~ 618 (765)
T PRK08255 541 MTRADMDRVRDDFVAAARRAAEAGFDWLELHCAHGYLLSSFISPLTNQRTDEYG--GSLENRLRYPLEVFRAVRAVWPAE 618 (765)
T ss_pred CCHHHHHHHHHHHHHHHHHHHHcCCCEEEEecccchHHHHhcCCCCCCCCCCCC--CCHHHHhHHHHHHHHHHHHhcCCC
Confidence 56666555544 456899999985 2 3455 4433 222222222 22357
Q ss_pred EEEEeeccccccCCCCcccCCCHHHHHHHHHHHHHHcCCCcccEEEeccCCCC----CCHHH--HHHHHHHHHHcCccce
Q 018482 87 VQLATKFGVVKFDVSGLVINGTPEYVRACCEASLKRLDVEYIDLYYQHRVDTT----VPIED--TMGELKKLVDEGKIKY 160 (355)
Q Consensus 87 ~~i~tK~~~~~~~~~~~~~~~s~~~i~~~~~~sL~~L~~d~iDl~~lh~p~~~----~~~~~--~~~~L~~l~~~Gkir~ 160 (355)
+-|..|+....... ...+.+... .+-+.|+..|+|+|| +|..... ..... .....+++++.=++--
T Consensus 619 ~~v~~ri~~~~~~~----~g~~~~~~~-~~~~~l~~~g~d~i~---vs~g~~~~~~~~~~~~~~~~~~~~~ik~~~~~pv 690 (765)
T PRK08255 619 KPMSVRISAHDWVE----GGNTPDDAV-EIARAFKAAGADLID---VSSGQVSKDEKPVYGRMYQTPFADRIRNEAGIAT 690 (765)
T ss_pred CeeEEEEccccccC----CCCCHHHHH-HHHHHHHhcCCcEEE---eCCCCCCcCCCCCcCccccHHHHHHHHHHcCCEE
Confidence 78889987533211 123444443 344557777865555 4532110 00000 1123345555545667
Q ss_pred eecCCC-CHHHHHHHhhcCCceeeccccc-cccchhhhchHHHHHHhCCc
Q 018482 161 IGLSEA-SPDTIRRAHAVHPVTALQMEWS-LWTRAIEDEIVPLCRELGIG 208 (355)
Q Consensus 161 iGvS~~-~~~~l~~~~~~~~~~~~q~~~n-~~~~~~~~~~~~~~~~~gi~ 208 (355)
+++.+. +++..+++++....|.+.+-=. +.+.. =.+..+.+.|+.
T Consensus 691 ~~~G~i~~~~~a~~~l~~g~~D~v~~gR~~l~dP~---~~~~~~~~~~~~ 737 (765)
T PRK08255 691 IAVGAISEADHVNSIIAAGRADLCALARPHLADPA---WTLHEAAEIGYR 737 (765)
T ss_pred EEeCCCCCHHHHHHHHHcCCcceeeEcHHHHhCcc---HHHHHHHHcCCC
Confidence 777765 7788888988888887776322 22221 245556666665
No 95
>COG3172 NadR Predicted ATPase/kinase involved in NAD metabolism [Coenzyme metabolism]
Probab=46.02 E-value=1.2e+02 Score=25.86 Aligned_cols=103 Identities=14% Similarity=0.090 Sum_probs=65.5
Q ss_pred HHHHH--HcCCCeEeCcc--------CcCCCChhHHHHHHHHhcCCCCCEEEEeecccccc-CCC-CcccCCCHHHHHHH
Q 018482 48 IKHAF--DQGITFFDTAD--------VYGPNNANELLVGKALKQFPREKVQLATKFGVVKF-DVS-GLVINGTPEYVRAC 115 (355)
Q Consensus 48 l~~A~--~~Gi~~~DtA~--------~Yg~~g~sE~~lg~~L~~~~R~~~~i~tK~~~~~~-~~~-~~~~~~s~~~i~~~ 115 (355)
.++|. ..+|-++||-. .|- |+.+..+-..|.+ .|-|+.|.++---.+. ++. ...-...+..+.+.
T Consensus 71 ~d~av~~a~~v~fiDTD~itT~~~~~~y~--gr~~P~~~~~i~~-~r~DL~lLl~p~t~wvaDG~R~~~~~~~R~~F~~~ 147 (187)
T COG3172 71 EDAAVRYANKVAFIDTDFLTTQAFCKKYE--GREHPFLQALIAE-YRFDLTLLLEPNTPWVADGLRSLGSSVQRQEFQNL 147 (187)
T ss_pred HHHHHhCCCceEEEeccHHHHHHHHHHHc--ccCCchHHHHHhh-cccceEEEcCCCCceeCCCccccccHhHHHHHHHH
Confidence 34444 47999999853 344 4455566666664 6778887776542222 221 11122467888999
Q ss_pred HHHHHHHcCCCcccEEEeccCCCCCCHHHHHHHHHHHHHcC
Q 018482 116 CEASLKRLDVEYIDLYYQHRVDTTVPIEDTMGELKKLVDEG 156 (355)
Q Consensus 116 ~~~sL~~L~~d~iDl~~lh~p~~~~~~~~~~~~L~~l~~~G 156 (355)
+++.|++-+..| +-|..++-........++.++|..++
T Consensus 148 l~~~L~~~~~~~---v~i~~~~y~eR~~~~~~aV~ell~~~ 185 (187)
T COG3172 148 LEQMLEENNIPF---VVIEGEDYLERYLQAVEAVEELLGEK 185 (187)
T ss_pred HHHHHHHhCCcE---EEEcCCCHHHHHHHHHHHHHHHHhcc
Confidence 999999998665 45556554455667888888888776
No 96
>cd07943 DRE_TIM_HOA 4-hydroxy-2-oxovalerate aldolase, N-terminal catalytic TIM barrel domain. 4-hydroxy 2-ketovalerate aldolase (Also known as 4-hydroxy-2-ketovalerate aldolase and 4-hydroxy-2-oxopentanoate aldolase (HOA)) converts 4-hydroxy-2-oxopentanoate to acetaldehyde and pyruvate, the penultimate step in the meta-cleavage pathway for the degradation of phenols, cresols and catechol. This family includes the Escherichia coli MhpE aldolase, the Pseudomonas DmpG aldolase, and the Burkholderia xenovorans BphI pyruvate aldolase. In Pseudomonas, the DmpG aldolase tightly associates with a dehydrogenase (DmpF ) and is inactive without it. HOA has a canonical TIM-barrel fold with a C-terminal extension that forms a funnel leading to the active site. This family belongs to the DRE-TIM metallolyase superfamily. DRE-TIM metallolyases include 2-isopropylmalate synthase (IPMS), alpha-isopropylmalate synthase (LeuA), 3-hydroxy-3-methylglutaryl-CoA lyase, homocitrate synthase, citramalate
Probab=45.97 E-value=1.3e+02 Score=27.34 Aligned_cols=104 Identities=14% Similarity=0.129 Sum_probs=59.3
Q ss_pred CCHHHHHHHHHHHHHHcCCCcccEEEeccCCC-----CCCHHHHHHHHHHHHHc-CccceeecC---CCCHHHHHHHhhc
Q 018482 107 GTPEYVRACCEASLKRLDVEYIDLYYQHRVDT-----TVPIEDTMGELKKLVDE-GKIKYIGLS---EASPDTIRRAHAV 177 (355)
Q Consensus 107 ~s~~~i~~~~~~sL~~L~~d~iDl~~lh~p~~-----~~~~~~~~~~L~~l~~~-Gkir~iGvS---~~~~~~l~~~~~~ 177 (355)
++.+. +.++-+.|.++|+++|.+-+...... .-.....|+.++.+++. +.++...++ ....+.++.+.+.
T Consensus 19 ~~~~~-k~~i~~~L~~~Gv~~iEvg~~~~~~~~~~~~~~~~~~~~e~i~~~~~~~~~~~~~~~~~~~~~~~~~i~~a~~~ 97 (263)
T cd07943 19 FTLEQ-VRAIARALDAAGVPLIEVGHGDGLGGSSLNYGFAAHTDEEYLEAAAEALKQAKLGVLLLPGIGTVDDLKMAADL 97 (263)
T ss_pred cCHHH-HHHHHHHHHHcCCCEEEeecCCCCCCcccccCCCCCChHHHHHHHHHhccCCEEEEEecCCccCHHHHHHHHHc
Confidence 44554 44555669999999999986532110 01112345566666443 346666554 2345666666553
Q ss_pred CCceeeccccccccchhhhchHHHHHHhCCcEEec
Q 018482 178 HPVTALQMEWSLWTRAIEDEIVPLCRELGIGIVPY 212 (355)
Q Consensus 178 ~~~~~~q~~~n~~~~~~~~~~~~~~~~~gi~v~a~ 212 (355)
+++.+.+....-.-..-.+.+++++++|+.+...
T Consensus 98 -g~~~iri~~~~s~~~~~~~~i~~ak~~G~~v~~~ 131 (263)
T cd07943 98 -GVDVVRVATHCTEADVSEQHIGAARKLGMDVVGF 131 (263)
T ss_pred -CCCEEEEEechhhHHHHHHHHHHHHHCCCeEEEE
Confidence 5566665443322222367889999999876553
No 97
>TIGR00737 nifR3_yhdG putative TIM-barrel protein, nifR3 family. Members of this family show a distant relationship to alpha/beta (TIM) barrel enzymes such as dihydroorotate dehydrogenase and glycolate oxidase.
Probab=45.93 E-value=2.6e+02 Score=26.23 Aligned_cols=137 Identities=12% Similarity=0.064 Sum_probs=82.7
Q ss_pred CHHHHHHHHHHHHHcCCCeEeCc---------cCcCCCChh----HHHHHHHHhcCC-CCCEEEEeeccccccCCCCccc
Q 018482 40 PDEVGISIIKHAFDQGITFFDTA---------DVYGPNNAN----ELLVGKALKQFP-REKVQLATKFGVVKFDVSGLVI 105 (355)
Q Consensus 40 ~~~~~~~~l~~A~~~Gi~~~DtA---------~~Yg~~g~s----E~~lg~~L~~~~-R~~~~i~tK~~~~~~~~~~~~~ 105 (355)
+.++..+..+.+.+.|+..||.. ..|+ |.. .+++.+.++..+ .-++-|+.|+...+..
T Consensus 73 ~~~~~~~aa~~~~~~G~d~IelN~gcP~~~~~~~~~--Gs~l~~~~~~~~ei~~~vr~~~~~pv~vKir~g~~~------ 144 (319)
T TIGR00737 73 DPDTMAEAAKINEELGADIIDINMGCPVPKITKKGA--GSALLRDPDLIGKIVKAVVDAVDIPVTVKIRIGWDD------ 144 (319)
T ss_pred CHHHHHHHHHHHHhCCCCEEEEECCCCHHHhcCCCc--cchHhCCHHHHHHHHHHHHhhcCCCEEEEEEcccCC------
Confidence 67788888888889999999852 1333 322 355556665421 2235678887432210
Q ss_pred CCCHHHHHHHHHHHHHHcCCCcccEEEeccCCCCCC--HHHHHHHHHHHHHcCccceeecCC-CCHHHHHHHhhcCCcee
Q 018482 106 NGTPEYVRACCEASLKRLDVEYIDLYYQHRVDTTVP--IEDTMGELKKLVDEGKIKYIGLSE-ASPDTIRRAHAVHPVTA 182 (355)
Q Consensus 106 ~~s~~~i~~~~~~sL~~L~~d~iDl~~lh~p~~~~~--~~~~~~~L~~l~~~Gkir~iGvS~-~~~~~l~~~~~~~~~~~ 182 (355)
....+ ..+-+.|+..|+ |.+.+|....... ....|+.+.++++.=.+.-|+... .+.+.++++++..+.+.
T Consensus 145 --~~~~~-~~~a~~l~~~G~---d~i~vh~r~~~~~~~~~~~~~~i~~i~~~~~ipvi~nGgI~~~~da~~~l~~~gad~ 218 (319)
T TIGR00737 145 --AHINA-VEAARIAEDAGA---QAVTLHGRTRAQGYSGEANWDIIARVKQAVRIPVIGNGDIFSPEDAKAMLETTGCDG 218 (319)
T ss_pred --CcchH-HHHHHHHHHhCC---CEEEEEcccccccCCCchhHHHHHHHHHcCCCcEEEeCCCCCHHHHHHHHHhhCCCE
Confidence 11111 234455677775 5666775432211 123578888888876677777765 47788888887777888
Q ss_pred eccccccc
Q 018482 183 LQMEWSLW 190 (355)
Q Consensus 183 ~q~~~n~~ 190 (355)
+++--.++
T Consensus 219 VmigR~~l 226 (319)
T TIGR00737 219 VMIGRGAL 226 (319)
T ss_pred EEEChhhh
Confidence 88754443
No 98
>PRK13361 molybdenum cofactor biosynthesis protein A; Provisional
Probab=45.41 E-value=2.7e+02 Score=26.25 Aligned_cols=97 Identities=13% Similarity=0.149 Sum_probs=55.5
Q ss_pred CCHHHHHHHHHHHHHcCCCeEeCccCcCCCC----hhHHHHHHHHhcCC-CCCEEEEeeccccccCCCCcccCCCHHHHH
Q 018482 39 VPDEVGISIIKHAFDQGITFFDTADVYGPNN----ANELLVGKALKQFP-REKVQLATKFGVVKFDVSGLVINGTPEYVR 113 (355)
Q Consensus 39 ~~~~~~~~~l~~A~~~Gi~~~DtA~~Yg~~g----~sE~~lg~~L~~~~-R~~~~i~tK~~~~~~~~~~~~~~~s~~~i~ 113 (355)
++.++..++++.+.+.|+..|--+. |. . .-.+++..+ ++.. ..++.|+|-.. .+.
T Consensus 45 ls~eei~~li~~~~~~Gv~~I~~tG--GE-Pllr~dl~~li~~i-~~~~~l~~i~itTNG~----------------ll~ 104 (329)
T PRK13361 45 LSLEELAWLAQAFTELGVRKIRLTG--GE-PLVRRGCDQLVARL-GKLPGLEELSLTTNGS----------------RLA 104 (329)
T ss_pred CCHHHHHHHHHHHHHCCCCEEEEEC--cC-CCccccHHHHHHHH-HhCCCCceEEEEeChh----------------HHH
Confidence 6888999999999999998887532 21 1 122222222 2211 22455555421 122
Q ss_pred HHHHHHHHHcCCCcccEEEeccCCCC--------CCHHHHHHHHHHHHHcCc
Q 018482 114 ACCEASLKRLDVEYIDLYYQHRVDTT--------VPIEDTMGELKKLVDEGK 157 (355)
Q Consensus 114 ~~~~~sL~~L~~d~iDl~~lh~p~~~--------~~~~~~~~~L~~l~~~Gk 157 (355)
+ .-+.|...|++++- +-|+..+++ ..++.+++.++.+++.|.
T Consensus 105 ~-~~~~L~~aGl~~v~-ISlDs~~~e~~~~i~~~g~~~~vl~~i~~~~~~Gi 154 (329)
T PRK13361 105 R-FAAELADAGLKRLN-ISLDTLRPELFAALTRNGRLERVIAGIDAAKAAGF 154 (329)
T ss_pred H-HHHHHHHcCCCeEE-EEeccCCHHHhhhhcCCCCHHHHHHHHHHHHHcCC
Confidence 2 34456667777654 355555332 235678888888888774
No 99
>cd07944 DRE_TIM_HOA_like 4-hydroxy-2-oxovalerate aldolase-like, N-terminal catalytic TIM barrel domain. This family of bacterial enzymes is sequence-similar to 4-hydroxy-2-oxovalerate aldolase (HOA) but its exact function is unknown. This family includes the Bacteroides vulgatus Bvu_2661 protein and belongs to the DRE-TIM metallolyase superfamily. DRE-TIM metallolyases include 2-isopropylmalate synthase (IPMS), alpha-isopropylmalate synthase (LeuA), 3-hydroxy-3-methylglutaryl-CoA lyase, homocitrate synthase, citramalate synthase, 4-hydroxy-2-oxovalerate aldolase, re-citrate synthase, transcarboxylase 5S, pyruvate carboxylase, AksA, and FrbC. These members all share a conserved triose-phosphate isomerase (TIM) barrel domain consisting of a core beta(8)-alpha(8) motif with the eight parallel beta strands forming an enclosed barrel surrounded by eight alpha helices. The domain has a catalytic center containing a divalent cation-binding site formed by a cluster of invariant residues t
Probab=45.31 E-value=1.5e+02 Score=27.07 Aligned_cols=104 Identities=12% Similarity=0.142 Sum_probs=60.9
Q ss_pred CCCHHHHHHHHHHHHHHcCCCcccEEEeccCCCCC------CHHHHHHHHHHHHHcCccceeecCCCC---HHHHHHHhh
Q 018482 106 NGTPEYVRACCEASLKRLDVEYIDLYYQHRVDTTV------PIEDTMGELKKLVDEGKIKYIGLSEAS---PDTIRRAHA 176 (355)
Q Consensus 106 ~~s~~~i~~~~~~sL~~L~~d~iDl~~lh~p~~~~------~~~~~~~~L~~l~~~Gkir~iGvS~~~---~~~l~~~~~ 176 (355)
.++.+. +..+-+.|.++|+++|++-+........ .-.+.|+.+.++.+ +..+..+++... .+.++.+.+
T Consensus 16 ~f~~~~-~~~ia~~L~~~GVd~IEvG~~~~~~~~~~~~~~~~~~~~~~~i~~~~~-~~~~~~~~~~~~~~~~~~l~~a~~ 93 (266)
T cd07944 16 DFGDEF-VKAIYRALAAAGIDYVEIGYRSSPEKEFKGKSAFCDDEFLRRLLGDSK-GNTKIAVMVDYGNDDIDLLEPASG 93 (266)
T ss_pred cCCHHH-HHHHHHHHHHCCCCEEEeecCCCCccccCCCccCCCHHHHHHHHhhhc-cCCEEEEEECCCCCCHHHHHHHhc
Confidence 355554 4566667999999999998765543210 11456666666553 245556655443 455555443
Q ss_pred cCCceeeccccccccchhhhchHHHHHHhCCcEEec
Q 018482 177 VHPVTALQMEWSLWTRAIEDEIVPLCRELGIGIVPY 212 (355)
Q Consensus 177 ~~~~~~~q~~~n~~~~~~~~~~~~~~~~~gi~v~a~ 212 (355)
..++.+.+.+..-.-..-.+.+++++++|+.+...
T Consensus 94 -~gv~~iri~~~~~~~~~~~~~i~~ak~~G~~v~~~ 128 (266)
T cd07944 94 -SVVDMIRVAFHKHEFDEALPLIKAIKEKGYEVFFN 128 (266)
T ss_pred -CCcCEEEEecccccHHHHHHHHHHHHHCCCeEEEE
Confidence 34555555443322222367889999999876643
No 100
>cd02803 OYE_like_FMN_family Old yellow enzyme (OYE)-like FMN binding domain. OYE was the first flavin-dependent enzyme identified, however its true physiological role remains elusive to this day. Each monomer of OYE contains FMN as a non-covalently bound cofactor, uses NADPH as a reducing agent with oxygens, quinones, and alpha,beta-unsaturated aldehydes and ketones, and can act as electron acceptors in the catalytic reaction. Members of OYE family include trimethylamine dehydrogenase, 2,4-dienoyl-CoA reductase, enoate reductase, pentaerythriol tetranitrate reductase, xenobiotic reductase, and morphinone reductase.
Probab=44.84 E-value=2.7e+02 Score=26.05 Aligned_cols=137 Identities=15% Similarity=0.083 Sum_probs=72.6
Q ss_pred CCHHHHHHHHH-------HHHHcCCCeEeCcc-------------------CcCCCChhHHH---HHHHHhc---CCCCC
Q 018482 39 VPDEVGISIIK-------HAFDQGITFFDTAD-------------------VYGPNNANELL---VGKALKQ---FPREK 86 (355)
Q Consensus 39 ~~~~~~~~~l~-------~A~~~Gi~~~DtA~-------------------~Yg~~g~sE~~---lg~~L~~---~~R~~ 86 (355)
++.+|..++++ .|.++|+..||--- .|| |.-|.. +-+.++. .-..+
T Consensus 131 mt~~ei~~~i~~~~~aA~~a~~aGfDgveih~~~gyL~~qFlsp~~n~R~d~yG--gs~enr~r~~~eii~avr~~~g~d 208 (327)
T cd02803 131 MTKEEIEQIIEDFAAAARRAKEAGFDGVEIHGAHGYLLSQFLSPYTNKRTDEYG--GSLENRARFLLEIVAAVREAVGPD 208 (327)
T ss_pred CCHHHHHHHHHHHHHHHHHHHHcCCCEEEEcchhhhHHHHhcCccccCCCcccC--CCHHHHHHHHHHHHHHHHHHcCCC
Confidence 56666555554 45679999887422 244 333322 2222222 12346
Q ss_pred EEEEeeccccccCCCCcccCCCHHHHHHHHHHHHHHcCCCcccEEEeccCCCCC----------CHHHHHHHHHHHHHcC
Q 018482 87 VQLATKFGVVKFDVSGLVINGTPEYVRACCEASLKRLDVEYIDLYYQHRVDTTV----------PIEDTMGELKKLVDEG 156 (355)
Q Consensus 87 ~~i~tK~~~~~~~~~~~~~~~s~~~i~~~~~~sL~~L~~d~iDl~~lh~p~~~~----------~~~~~~~~L~~l~~~G 156 (355)
+.|..|+....... ...+.+... .+-+.|+.+|+|+|+ ++...... .....++.+..+++.=
T Consensus 209 ~~i~vris~~~~~~----~g~~~~e~~-~la~~l~~~G~d~i~---vs~g~~~~~~~~~~~~~~~~~~~~~~~~~ir~~~ 280 (327)
T cd02803 209 FPVGVRLSADDFVP----GGLTLEEAI-EIAKALEEAGVDALH---VSGGSYESPPPIIPPPYVPEGYFLELAEKIKKAV 280 (327)
T ss_pred ceEEEEechhccCC----CCCCHHHHH-HHHHHHHHcCCCEEE---eCCCCCcccccccCCCCCCcchhHHHHHHHHHHC
Confidence 77888886542111 113444433 334455677765554 34332111 0122345556666654
Q ss_pred ccceeecCCC-CHHHHHHHhhcCCceeecc
Q 018482 157 KIKYIGLSEA-SPDTIRRAHAVHPVTALQM 185 (355)
Q Consensus 157 kir~iGvS~~-~~~~l~~~~~~~~~~~~q~ 185 (355)
.+.-++..+. +.+.++++++....+.+++
T Consensus 281 ~iPVi~~Ggi~t~~~a~~~l~~g~aD~V~i 310 (327)
T cd02803 281 KIPVIAVGGIRDPEVAEEILAEGKADLVAL 310 (327)
T ss_pred CCCEEEeCCCCCHHHHHHHHHCCCCCeeee
Confidence 5666766665 4788888887766777766
No 101
>COG1121 ZnuC ABC-type Mn/Zn transport systems, ATPase component [Inorganic ion transport and metabolism]
Probab=44.52 E-value=1e+02 Score=28.12 Aligned_cols=67 Identities=19% Similarity=0.188 Sum_probs=52.3
Q ss_pred CCHHHHHHHHHHHHHHcCCC--------------------------cccEEEeccCCCCCCH---HHHHHHHHHHHHcCc
Q 018482 107 GTPEYVRACCEASLKRLDVE--------------------------YIDLYYQHRVDTTVPI---EDTMGELKKLVDEGK 157 (355)
Q Consensus 107 ~s~~~i~~~~~~sL~~L~~d--------------------------~iDl~~lh~p~~~~~~---~~~~~~L~~l~~~Gk 157 (355)
++.+. ++.++++|+++|.. ..|++++.-|..-.+. .++++-|.+|+++|+
T Consensus 112 ~~~~d-~~~v~~aL~~Vgm~~~~~r~i~~LSGGQ~QRV~lARAL~~~p~lllLDEP~~gvD~~~~~~i~~lL~~l~~eg~ 190 (254)
T COG1121 112 LNKKD-KEKVDEALERVGMEDLRDRQIGELSGGQKQRVLLARALAQNPDLLLLDEPFTGVDVAGQKEIYDLLKELRQEGK 190 (254)
T ss_pred ccHHH-HHHHHHHHHHcCchhhhCCcccccCcHHHHHHHHHHHhccCCCEEEecCCcccCCHHHHHHHHHHHHHHHHCCC
Confidence 34444 78899999999864 3489999998766554 478999999999988
Q ss_pred cceeecCCCCHHHHHHHhh
Q 018482 158 IKYIGLSEASPDTIRRAHA 176 (355)
Q Consensus 158 ir~iGvS~~~~~~l~~~~~ 176 (355)
.|=+.+|+...+....+
T Consensus 191 --tIl~vtHDL~~v~~~~D 207 (254)
T COG1121 191 --TVLMVTHDLGLVMAYFD 207 (254)
T ss_pred --EEEEEeCCcHHhHhhCC
Confidence 77788888888766654
No 102
>COG2873 MET17 O-acetylhomoserine sulfhydrylase [Amino acid transport and metabolism]
Probab=43.89 E-value=1.7e+02 Score=28.39 Aligned_cols=61 Identities=16% Similarity=0.155 Sum_probs=38.4
Q ss_pred HHHHHHHHHHcCCCeEeCccCcCCCChhHHHHHHHHhc--CCCCCEEEEeeccccccCCCCcccCCCHHHHHHHHHHHHH
Q 018482 44 GISIIKHAFDQGITFFDTADVYGPNNANELLVGKALKQ--FPREKVQLATKFGVVKFDVSGLVINGTPEYVRACCEASLK 121 (355)
Q Consensus 44 ~~~~l~~A~~~Gi~~~DtA~~Yg~~g~sE~~lg~~L~~--~~R~~~~i~tK~~~~~~~~~~~~~~~s~~~i~~~~~~sL~ 121 (355)
+.+-=-+|+|.|+--+-+|+ |.+-..+ ++-. ..-+.++-++++... -...+..+|+
T Consensus 66 vlE~RiAaLEGG~aa~a~aS-----G~AA~~~--ai~~la~aGD~iVss~~LYGG---------------T~~lf~~tl~ 123 (426)
T COG2873 66 VLEERIAALEGGVAALAVAS-----GQAAITY--AILNLAGAGDNIVSSSKLYGG---------------TYNLFSHTLK 123 (426)
T ss_pred HHHHHHHHhhcchhhhhhcc-----chHHHHH--HHHHhccCCCeeEeeccccCc---------------hHHHHHHHHH
Confidence 33444578999999888875 3333222 2222 245677777776432 3567788999
Q ss_pred HcCCC
Q 018482 122 RLDVE 126 (355)
Q Consensus 122 ~L~~d 126 (355)
++|++
T Consensus 124 ~~Gi~ 128 (426)
T COG2873 124 RLGIE 128 (426)
T ss_pred hcCcE
Confidence 99964
No 103
>cd03321 mandelate_racemase Mandelate racemase (MR) catalyzes the Mg2+-dependent 1,1-proton transfer reaction that interconverts the enantiomers of mandelic acid. MR is the first enzyme in the bacterial pathway that converts mandelic acid to benzoic acid and allows this pathway to utilize either enantiomer of mandelate. MR belongs to the enolase superfamily of enzymes, characterized by the presence of an enolate anion intermediate which is generated by abstraction of the alpha-proton of the carboxylate substrate by an active site residue and is stabilized by coordination to the essential Mg2+ ion.
Probab=43.85 E-value=2.9e+02 Score=26.28 Aligned_cols=151 Identities=13% Similarity=0.089 Sum_probs=84.6
Q ss_pred CHHHHHHHHHHHHHcCCCeEeCccCcCCCChhHHHHHHHHhcCCCCCEEEEeeccccccCCCCcccCCCHHHHHHHHHHH
Q 018482 40 PDEVGISIIKHAFDQGITFFDTADVYGPNNANELLVGKALKQFPREKVQLATKFGVVKFDVSGLVINGTPEYVRACCEAS 119 (355)
Q Consensus 40 ~~~~~~~~l~~A~~~Gi~~~DtA~~Yg~~g~sE~~lg~~L~~~~R~~~~i~tK~~~~~~~~~~~~~~~s~~~i~~~~~~s 119 (355)
+.++..+.+..+.+.|++.|=.--...+ -..+.-.=+++++.-.+++.|..-.. ..++.+...+.+++
T Consensus 141 ~~~~~~~~a~~~~~~Gf~~~KiKvg~~~-~~~d~~~v~air~~~g~~~~l~vDaN----------~~~~~~~A~~~~~~- 208 (355)
T cd03321 141 GAKLATERAVTAAEEGFHAVKTKIGYPT-ADEDLAVVRSIRQAVGDGVGLMVDYN----------QSLTVPEAIERGQA- 208 (355)
T ss_pred hHHHHHHHHHHHHHhhhHHHhhhcCCCC-hHhHHHHHHHHHHhhCCCCEEEEeCC----------CCcCHHHHHHHHHH-
Confidence 3455556666677888876543111111 11222233444442223444433221 12455543333322
Q ss_pred HHHcCCCcccEEEeccCCCCCCHHHHHHHHHHHHHcCccc-eeecCCCCHHHHHHHhhcCCceeeccccccccchh-hhc
Q 018482 120 LKRLDVEYIDLYYQHRVDTTVPIEDTMGELKKLVDEGKIK-YIGLSEASPDTIRRAHAVHPVTALQMEWSLWTRAI-EDE 197 (355)
Q Consensus 120 L~~L~~d~iDl~~lh~p~~~~~~~~~~~~L~~l~~~Gkir-~iGvS~~~~~~l~~~~~~~~~~~~q~~~n~~~~~~-~~~ 197 (355)
|+.+ ++.++..|-.. +-++.+.+|++..-|. ..|=+.++...+..+++...++++|+..+..-.-. -.+
T Consensus 209 l~~~-----~i~~iEeP~~~----~d~~~~~~l~~~~~ipia~~E~~~~~~~~~~~i~~~~~d~i~~~~~~~GGit~~~~ 279 (355)
T cd03321 209 LDQE-----GLTWIEEPTLQ----HDYEGHARIASALRTPVQMGENWLGPEEMFKALSAGACDLVMPDLMKIGGVTGWLR 279 (355)
T ss_pred HHcC-----CCCEEECCCCC----cCHHHHHHHHHhcCCCEEEcCCCcCHHHHHHHHHhCCCCeEecCHhhhCCHHHHHH
Confidence 3333 56667666432 2356677777764332 45666788999999998888999998766542211 267
Q ss_pred hHHHHHHhCCcEEe
Q 018482 198 IVPLCRELGIGIVP 211 (355)
Q Consensus 198 ~~~~~~~~gi~v~a 211 (355)
+...|+.+|+.++.
T Consensus 280 ia~~A~~~gi~~~~ 293 (355)
T cd03321 280 ASALAEQAGIPMSS 293 (355)
T ss_pred HHHHHHHcCCeecc
Confidence 89999999999853
No 104
>PRK00077 eno enolase; Provisional
Probab=43.40 E-value=2.7e+02 Score=27.46 Aligned_cols=96 Identities=9% Similarity=0.057 Sum_probs=64.9
Q ss_pred CCHHHHHHHHHHHHHHcCCCcccEEEeccCCCCCCHHHHHHHHHHHHHcC--ccceeecCC--CCHHHHHHHhhcCCcee
Q 018482 107 GTPEYVRACCEASLKRLDVEYIDLYYQHRVDTTVPIEDTMGELKKLVDEG--KIKYIGLSE--ASPDTIRRAHAVHPVTA 182 (355)
Q Consensus 107 ~s~~~i~~~~~~sL~~L~~d~iDl~~lh~p~~~~~~~~~~~~L~~l~~~G--kir~iGvS~--~~~~~l~~~~~~~~~~~ 182 (355)
++++...+.+.+.++.+ ++.+|..|-... -|+.+.+|.+.- ++.-.|=-. .+...++.+++....++
T Consensus 261 ~s~~e~~~~~~~l~e~y-----~i~~iEdPl~~~----D~~g~~~L~~~~~~~ipI~gdE~~~t~~~~~~~~i~~~a~d~ 331 (425)
T PRK00077 261 LTSEEMIDYLAELVDKY-----PIVSIEDGLDEN----DWEGWKLLTEKLGDKVQLVGDDLFVTNTKRLKKGIEKGAANS 331 (425)
T ss_pred CCHHHHHHHHHHHHhhC-----CcEEEEcCCCCc----cHHHHHHHHHhcCCCCeEEcCCCccCCHHHHHHHHHhCCCCE
Confidence 56666666666666553 577888875433 366666666653 455444332 36899999998888899
Q ss_pred eccccccccchh-hhchHHHHHHhCCcEEe
Q 018482 183 LQMEWSLWTRAI-EDEIVPLCRELGIGIVP 211 (355)
Q Consensus 183 ~q~~~n~~~~~~-~~~~~~~~~~~gi~v~a 211 (355)
+|+..+-.-.-. ..++...|+.+|+.++.
T Consensus 332 v~ik~~~~GGitea~~ia~lA~~~gi~~~v 361 (425)
T PRK00077 332 ILIKVNQIGTLTETLDAIELAKRAGYTAVV 361 (425)
T ss_pred EEeCccccCCHHHHHHHHHHHHHcCCeEEE
Confidence 998777543211 26789999999998765
No 105
>cd07937 DRE_TIM_PC_TC_5S Pyruvate carboxylase and Transcarboxylase 5S, carboxyltransferase domain. This family includes the carboxyltransferase domains of pyruvate carboxylase (PC) and the transcarboxylase (TC) 5S subunit. Transcarboxylase 5S is a cobalt-dependent metalloenzyme subunit of the biotin-dependent transcarboxylase multienzyme complex. Transcarboxylase 5S transfers carbon dioxide from the 1.3S biotin to pyruvate in the second of two carboxylation reactions catalyzed by TC. The first reaction involves the transfer of carbon dioxide from methylmalonyl-CoA to the 1.3S biotin, and is catalyzed by the 12S subunit. These two steps allow a carboxylate group to be transferred from oxaloacetate to propionyl-CoA to yield pyruvate and methylmalonyl-CoA. The catalytic domain of transcarboxylase 5S has a canonical TIM-barrel fold with a large C-terminal extension that forms a funnel leading to the active site. Transcarboxylase 5S forms a homodimer and there are six dimers per complex
Probab=42.98 E-value=2.7e+02 Score=25.58 Aligned_cols=158 Identities=10% Similarity=0.018 Sum_probs=79.8
Q ss_pred CCCCCHHHHHHHHHHHHHcCCCeEeCccCc--------CCCChhHHHHHHHHhcCCCCCEEEEeeccccccCCCCcccCC
Q 018482 36 NDPVPDEVGISIIKHAFDQGITFFDTADVY--------GPNNANELLVGKALKQFPREKVQLATKFGVVKFDVSGLVING 107 (355)
Q Consensus 36 ~~~~~~~~~~~~l~~A~~~Gi~~~DtA~~Y--------g~~g~sE~~lg~~L~~~~R~~~~i~tK~~~~~~~~~~~~~~~ 107 (355)
+..++.++..++.....+.||..||...-- -+ ..-++.+..+.+..++.++......-... ....
T Consensus 15 ~~~~~~~~~~~ia~~L~~~Gv~~iE~G~~a~~~~~~~~~~-~~~~e~i~~~~~~~~~~~l~~~~r~~~~~------~~~~ 87 (275)
T cd07937 15 ATRMRTEDMLPIAEALDEAGFFSLEVWGGATFDVCMRFLN-EDPWERLRELRKAMPNTPLQMLLRGQNLV------GYRH 87 (275)
T ss_pred ceeccHHHHHHHHHHHHHcCCCEEEccCCcchhhhccccC-CCHHHHHHHHHHhCCCCceehhccccccc------CccC
Confidence 333577888888888889999999987411 11 22334444444333444444333321110 0011
Q ss_pred CHHHHHHHHHHHHHHcCCCcccEEEeccCCCCCCHHHHHHHHHHHHHcCccceeec-----CCCCHHHHHHHhhc---CC
Q 018482 108 TPEYVRACCEASLKRLDVEYIDLYYQHRVDTTVPIEDTMGELKKLVDEGKIKYIGL-----SEASPDTIRRAHAV---HP 179 (355)
Q Consensus 108 s~~~i~~~~~~sL~~L~~d~iDl~~lh~p~~~~~~~~~~~~L~~l~~~Gkir~iGv-----S~~~~~~l~~~~~~---~~ 179 (355)
-|..+.+..-+.....|++.+-++ .+..+++.+.+.++..++.|+.-..++ +.++.+.+.++.+. .+
T Consensus 88 ~p~~~~~~di~~~~~~g~~~iri~-----~~~~~~~~~~~~i~~ak~~G~~v~~~i~~~~~~~~~~~~~~~~~~~~~~~G 162 (275)
T cd07937 88 YPDDVVELFVEKAAKNGIDIFRIF-----DALNDVRNLEVAIKAVKKAGKHVEGAICYTGSPVHTLEYYVKLAKELEDMG 162 (275)
T ss_pred CCcHHHHHHHHHHHHcCCCEEEEe-----ecCChHHHHHHHHHHHHHCCCeEEEEEEecCCCCCCHHHHHHHHHHHHHcC
Confidence 223333333233334455544432 222346778888899999997433334 34556655544332 34
Q ss_pred ceeecc--ccccccchhhhchHHHHHHh
Q 018482 180 VTALQM--EWSLWTRAIEDEIVPLCREL 205 (355)
Q Consensus 180 ~~~~q~--~~n~~~~~~~~~~~~~~~~~ 205 (355)
.+.+-+ .+..+.+..-.+++...+++
T Consensus 163 a~~i~l~DT~G~~~P~~v~~lv~~l~~~ 190 (275)
T cd07937 163 ADSICIKDMAGLLTPYAAYELVKALKKE 190 (275)
T ss_pred CCEEEEcCCCCCCCHHHHHHHHHHHHHh
Confidence 444443 23333333225666666654
No 106
>PLN00191 enolase
Probab=42.89 E-value=1.8e+02 Score=29.02 Aligned_cols=98 Identities=12% Similarity=0.122 Sum_probs=67.7
Q ss_pred CCHHHHHHHHHHHHHHcCCCcccEEEeccCCCCCCHHHHHHHHHHHHHcCccceee-cC-CCCHHHHHHHhhcCCceeec
Q 018482 107 GTPEYVRACCEASLKRLDVEYIDLYYQHRVDTTVPIEDTMGELKKLVDEGKIKYIG-LS-EASPDTIRRAHAVHPVTALQ 184 (355)
Q Consensus 107 ~s~~~i~~~~~~sL~~L~~d~iDl~~lh~p~~~~~~~~~~~~L~~l~~~Gkir~iG-vS-~~~~~~l~~~~~~~~~~~~q 184 (355)
.+++.+.+-+.+.+++ .++.+|..|-.. +-|+.+.+|.+..++.-+| =+ ..++..++++++....++++
T Consensus 295 ~s~~e~i~~~~~L~~~-----y~I~~IEDPl~~----~D~eg~~~Lt~~~~ipIvgDE~~vtn~~~l~~~I~~~aad~i~ 365 (457)
T PLN00191 295 KSGDELIDLYKEFVSD-----YPIVSIEDPFDQ----DDWEHWAKLTSLEDVQIVGDDLLVTNPKRVAKAIQEKACNALL 365 (457)
T ss_pred cCHHHHHHHHHHHhhc-----CCcEEEECCCCc----ccHHHHHHHHccCCCcEEccCcccCCHHHHHHHHHhCCCCEEE
Confidence 3566555555544433 367788887443 3477778888888887666 22 25688999999888888998
Q ss_pred cccccccchh-hhchHHHHHHhCCcEEecc
Q 018482 185 MEWSLWTRAI-EDEIVPLCRELGIGIVPYS 213 (355)
Q Consensus 185 ~~~n~~~~~~-~~~~~~~~~~~gi~v~a~s 213 (355)
+..|-.-.-. ..++...|+++|+.++..+
T Consensus 366 iKl~qiGGITea~~~a~lA~~~G~~~~ish 395 (457)
T PLN00191 366 LKVNQIGTVTESIEAVKMSKAAGWGVMTSH 395 (457)
T ss_pred ecccccCCHHHHHHHHHHHHHCCCEEEeCC
Confidence 8777543211 2678999999999997643
No 107
>TIGR00126 deoC deoxyribose-phosphate aldolase. Deoxyribose-phosphate aldolase is involved in the catabolism of nucleotides and deoxyriibonucleotides. The catalytic process is as follows: 2-deoxy-D-ribose 5-phosphate = D-glyceraldehyde 3-phosphate + acetaldehyde. It is found in both gram-postive and gram-negative bacteria.
Probab=42.82 E-value=1.6e+02 Score=26.09 Aligned_cols=73 Identities=22% Similarity=0.207 Sum_probs=49.9
Q ss_pred CHHHHHHHHHHHHHcCCCeEeCccCcCCCChhHH---HHHHHHhcCCCCCEEEEeeccccccCCCCcccCCCHHHHHHHH
Q 018482 40 PDEVGISIIKHAFDQGITFFDTADVYGPNNANEL---LVGKALKQFPREKVQLATKFGVVKFDVSGLVINGTPEYVRACC 116 (355)
Q Consensus 40 ~~~~~~~~l~~A~~~Gi~~~DtA~~Yg~~g~sE~---~lg~~L~~~~R~~~~i~tK~~~~~~~~~~~~~~~s~~~i~~~~ 116 (355)
+.++.....+.|.++|..|+=|+..|+.+|.+.. .+.+.++ .. +..|..... .+.+...+-+
T Consensus 130 ~~~ei~~a~~ia~eaGADfvKTsTGf~~~gat~~dv~~m~~~v~----~~--v~IKaaGGi---------rt~~~a~~~i 194 (211)
T TIGR00126 130 TDEEIRKACEICIDAGADFVKTSTGFGAGGATVEDVRLMRNTVG----DT--IGVKASGGV---------RTAEDAIAMI 194 (211)
T ss_pred CHHHHHHHHHHHHHhCCCEEEeCCCCCCCCCCHHHHHHHHHHhc----cC--CeEEEeCCC---------CCHHHHHHHH
Confidence 5578889999999999999999988874343333 3333333 22 344442111 2678888888
Q ss_pred HHHHHHcCCCc
Q 018482 117 EASLKRLDVEY 127 (355)
Q Consensus 117 ~~sL~~L~~d~ 127 (355)
+.--.|+|+++
T Consensus 195 ~aGa~riGts~ 205 (211)
T TIGR00126 195 EAGASRIGASA 205 (211)
T ss_pred HHhhHHhCcch
Confidence 99999999865
No 108
>PRK09427 bifunctional indole-3-glycerol phosphate synthase/phosphoribosylanthranilate isomerase; Provisional
Probab=42.02 E-value=63 Score=32.27 Aligned_cols=65 Identities=15% Similarity=0.212 Sum_probs=43.9
Q ss_pred HHHcCCCcccEEEeccCCCCCCHHHHHHHHHHHHHcCccceeecC-CCCHHHHHHHhhcCCceeeccccc
Q 018482 120 LKRLDVEYIDLYYQHRVDTTVPIEDTMGELKKLVDEGKIKYIGLS-EASPDTIRRAHAVHPVTALQMEWS 188 (355)
Q Consensus 120 L~~L~~d~iDl~~lh~p~~~~~~~~~~~~L~~l~~~Gkir~iGvS-~~~~~~l~~~~~~~~~~~~q~~~n 188 (355)
...+|.|++-+++........+.+.+-+-...+. ++.+||- |.+++.+.++++..+++++|++-+
T Consensus 273 a~~~GaD~lGfIf~~~SpR~V~~~~a~~i~~~l~----v~~VgVfv~~~~~~i~~i~~~~~lD~vQLHG~ 338 (454)
T PRK09427 273 AYDAGAVYGGLIFVEKSPRYVSLEQAQEIIAAAP----LRYVGVFRNADIEDIVDIAKQLSLAAVQLHGD 338 (454)
T ss_pred HHhCCCCEEeeEeCCCCCCCCCHHHHHHHHHhCC----CCEEEEEeCCCHHHHHHHHHHcCCCEEEeCCC
Confidence 4557888888865433233344443333332222 8889997 678899999998899999999664
No 109
>COG2949 SanA Uncharacterized membrane protein [Function unknown]
Probab=41.58 E-value=2.2e+02 Score=25.29 Aligned_cols=99 Identities=15% Similarity=0.272 Sum_probs=70.2
Q ss_pred HHHHHHHHHHHHcCCCcccEEEeccCCCCCCHHHHHHHHHHHHHcCc------cceeecCCC-CHHHHHHHhhcCCceee
Q 018482 111 YVRACCEASLKRLDVEYIDLYYQHRVDTTVPIEDTMGELKKLVDEGK------IKYIGLSEA-SPDTIRRAHAVHPVTAL 183 (355)
Q Consensus 111 ~i~~~~~~sL~~L~~d~iDl~~lh~p~~~~~~~~~~~~L~~l~~~Gk------ir~iGvS~~-~~~~l~~~~~~~~~~~~ 183 (355)
+....++..-+...-..++-+++--.+.....+|-+.-.++|.+.|- .-|-|+++. |.=+..+......|.++
T Consensus 77 yy~~Ri~aA~~ly~~gKV~~LLlSGDN~~~sYnEp~tM~kdL~~~GVp~~~i~lDyAGFrTLDSvvRA~kVF~~~~ftII 156 (235)
T COG2949 77 YYTYRIDAAIALYKAGKVNYLLLSGDNATVSYNEPRTMRKDLIAAGVPAKNIFLDYAGFRTLDSVVRARKVFGTNDFTII 156 (235)
T ss_pred hHHHHHHHHHHHHhcCCeeEEEEecCCCcccccchHHHHHHHHHcCCCHHHeeecccCccHHHHHHHHHHHcCcCcEEEE
Confidence 44555666666666678999999888877788899999999999997 344577664 23344455555666666
Q ss_pred ccccccccchhhhchHHHHHHhCCcEEecccC
Q 018482 184 QMEWSLWTRAIEDEIVPLCRELGIGIVPYSPL 215 (355)
Q Consensus 184 q~~~n~~~~~~~~~~~~~~~~~gi~v~a~spl 215 (355)
--+|+- +..+-.|+.+||.-+++..-
T Consensus 157 tQ~FHc------eRAlfiA~~~gIdAic~~ap 182 (235)
T COG2949 157 TQRFHC------ERALFIARQMGIDAICFAAP 182 (235)
T ss_pred eccccc------HHHHHHHHHhCCceEEecCC
Confidence 555553 45677899999998886543
No 110
>PRK14461 ribosomal RNA large subunit methyltransferase N; Provisional
Probab=41.56 E-value=1.6e+02 Score=28.58 Aligned_cols=90 Identities=16% Similarity=0.217 Sum_probs=59.7
Q ss_pred cEEEeccCCCC-----------CCHHHHHHHHHHHHHc-Cc---ccee---ecCCCCHHHHHHHhh---cC------Cce
Q 018482 129 DLYYQHRVDTT-----------VPIEDTMGELKKLVDE-GK---IKYI---GLSEASPDTIRRAHA---VH------PVT 181 (355)
Q Consensus 129 Dl~~lh~p~~~-----------~~~~~~~~~L~~l~~~-Gk---ir~i---GvS~~~~~~l~~~~~---~~------~~~ 181 (355)
=.+-||.|+.+ -+++++++++++..+. |+ +-|+ || |.+.++.+++.+ -. +..
T Consensus 230 LAiSLHA~~~e~R~~lmPin~~ypl~eLl~a~~~y~~~t~rrit~EYvLi~gv-NDs~e~A~~L~~llk~~~~~~~l~~~ 308 (371)
T PRK14461 230 LAISLHAPDDALRSELMPVNRRYPIADLMAATRDYIAKTRRRVSFEYVLLQGK-NDHPEQAAALARLLRGEAPPGPLLVH 308 (371)
T ss_pred EEEEeCCCCHHHHHHhcCcccCCCHHHHHHHHHHHHHhhCCEEEEEEEEECCC-CCCHHHHHHHHHHHcCCccccCCceE
Confidence 35889999653 3578999999998764 43 2233 34 335555555444 34 568
Q ss_pred eeccccccccch--------hhhchHHHHHHhCCcEEecccCCccc
Q 018482 182 ALQMEWSLWTRA--------IEDEIVPLCRELGIGIVPYSPLGRGF 219 (355)
Q Consensus 182 ~~q~~~n~~~~~--------~~~~~~~~~~~~gi~v~a~spl~~G~ 219 (355)
++-++||+.... .-....+.++++||.+......+..+
T Consensus 309 VNLIp~Np~~~~~~~~ps~~~i~~F~~~L~~~gi~vtiR~s~G~DI 354 (371)
T PRK14461 309 VNLIPWNPVPGTPLGRSERERVTTFQRILTDYGIPCTVRVERGVEI 354 (371)
T ss_pred EEEecCCCCCCCCCCCCCHHHHHHHHHHHHHCCceEEEeCCCCcCh
Confidence 888999986531 11566777889999999988776443
No 111
>PRK00507 deoxyribose-phosphate aldolase; Provisional
Probab=40.88 E-value=1.4e+02 Score=26.66 Aligned_cols=77 Identities=21% Similarity=0.123 Sum_probs=51.7
Q ss_pred CCHHHHHHHHHHHHHcCCCeEeCccCcCCCChhHHHHHHHHhcCCCCCEEEEeeccccccCCCCcccCCCHHHHHHHHHH
Q 018482 39 VPDEVGISIIKHAFDQGITFFDTADVYGPNNANELLVGKALKQFPREKVQLATKFGVVKFDVSGLVINGTPEYVRACCEA 118 (355)
Q Consensus 39 ~~~~~~~~~l~~A~~~Gi~~~DtA~~Yg~~g~sE~~lg~~L~~~~R~~~~i~tK~~~~~~~~~~~~~~~s~~~i~~~~~~ 118 (355)
++.++..++.+.|+++|..|+=|+..|+.+|.+.+.+....+... .+ +..|....- .+.+...+-++.
T Consensus 133 L~~e~i~~a~~~~~~agadfIKTsTG~~~~gat~~~v~~m~~~~~-~~--~~IKasGGI---------rt~~~a~~~i~a 200 (221)
T PRK00507 133 LTDEEKVKACEIAKEAGADFVKTSTGFSTGGATVEDVKLMRETVG-PR--VGVKASGGI---------RTLEDALAMIEA 200 (221)
T ss_pred CCHHHHHHHHHHHHHhCCCEEEcCCCCCCCCCCHHHHHHHHHHhC-CC--ceEEeeCCc---------CCHHHHHHHHHc
Confidence 477888999999999999999999998655767766666555422 22 223332111 356667777777
Q ss_pred HHHHcCCCc
Q 018482 119 SLKRLDVEY 127 (355)
Q Consensus 119 sL~~L~~d~ 127 (355)
--.|+|+.+
T Consensus 201 GA~riGtS~ 209 (221)
T PRK00507 201 GATRLGTSA 209 (221)
T ss_pred CcceEccCc
Confidence 667777643
No 112
>PRK10605 N-ethylmaleimide reductase; Provisional
Probab=40.67 E-value=3.4e+02 Score=26.10 Aligned_cols=140 Identities=14% Similarity=0.111 Sum_probs=72.0
Q ss_pred CCCHHHHHHHHH-------HHHHcCCCeEeC--c-----------------cCcCCCChhHH---HHHHHHhc----CCC
Q 018482 38 PVPDEVGISIIK-------HAFDQGITFFDT--A-----------------DVYGPNNANEL---LVGKALKQ----FPR 84 (355)
Q Consensus 38 ~~~~~~~~~~l~-------~A~~~Gi~~~Dt--A-----------------~~Yg~~g~sE~---~lg~~L~~----~~R 84 (355)
.++.++..++++ .|.++|+..+.- | +.|| |+-|. ++-+.++. ..
T Consensus 148 ~mt~~eI~~ii~~f~~AA~rA~~AGfDGVEIh~ahGyLl~qFLSp~~N~RtDeYG--GslENR~Rf~~Eiv~aVr~~vg- 224 (362)
T PRK10605 148 ALELEEIPGIVNDFRQAIANAREAGFDLVELHSAHGYLLHQFLSPSSNQRTDQYG--GSVENRARLVLEVVDAGIAEWG- 224 (362)
T ss_pred cCCHHHHHHHHHHHHHHHHHHHHcCCCEEEEcccccchHHHhcCCcCCCCCCcCC--CcHHHHHHHHHHHHHHHHHHcC-
Confidence 357777666654 456799998774 2 3455 54552 22233322 22
Q ss_pred CCEEEEeeccccccCCCCcccCCCHHHHHHHHHHHHHHcCCCcccEEEeccCCCCCCHHHHHHHHHHHHHcCccceeecC
Q 018482 85 EKVQLATKFGVVKFDVSGLVINGTPEYVRACCEASLKRLDVEYIDLYYQHRVDTTVPIEDTMGELKKLVDEGKIKYIGLS 164 (355)
Q Consensus 85 ~~~~i~tK~~~~~~~~~~~~~~~s~~~i~~~~~~sL~~L~~d~iDl~~lh~p~~~~~~~~~~~~L~~l~~~Gkir~iGvS 164 (355)
.+ +|..|+....... ......+.+.....+-+-|+..|+|++++-.-++.... ... ....+.+++.=.+.-+++.
T Consensus 225 ~~-~igvRis~~~~~~-~~~~G~~~~e~~~~~~~~L~~~giD~i~vs~~~~~~~~-~~~--~~~~~~ik~~~~~pv~~~G 299 (362)
T PRK10605 225 AD-RIGIRISPLGTFN-NVDNGPNEEADALYLIEQLGKRGIAYLHMSEPDWAGGE-PYS--DAFREKVRARFHGVIIGAG 299 (362)
T ss_pred CC-eEEEEECCccccc-cCCCCCCHHHHHHHHHHHHHHcCCCEEEeccccccCCc-ccc--HHHHHHHHHHCCCCEEEeC
Confidence 23 4888886532100 00112344443345555667778888876532221111 111 1122333332223345555
Q ss_pred CCCHHHHHHHhhcCCceeecc
Q 018482 165 EASPDTIRRAHAVHPVTALQM 185 (355)
Q Consensus 165 ~~~~~~l~~~~~~~~~~~~q~ 185 (355)
.++++..+++++....+.+-+
T Consensus 300 ~~~~~~ae~~i~~G~~D~V~~ 320 (362)
T PRK10605 300 AYTAEKAETLIGKGLIDAVAF 320 (362)
T ss_pred CCCHHHHHHHHHcCCCCEEEE
Confidence 678888888888777777655
No 113
>TIGR03597 GTPase_YqeH ribosome biogenesis GTPase YqeH. This family describes YqeH, a member of a larger family of GTPases involved in ribosome biogenesis. Like YqlF, it shows a cyclical permutation relative to GTPases EngA (in which the GTPase domain is duplicated), Era, and others. Members of this protein family are found in a relatively small number of bacterial species, including Bacillus subtilis but not Escherichia coli.
Probab=40.31 E-value=3e+02 Score=26.37 Aligned_cols=140 Identities=13% Similarity=0.187 Sum_probs=82.6
Q ss_pred cceeccccCCCCCCC----CCCHHHHHHHHHHHHH---cCCCeEeCccCcCCCChhHHHHHHHHhcCCCCCEEEEeeccc
Q 018482 23 KLGFGCMGLTGMYND----PVPDEVGISIIKHAFD---QGITFFDTADVYGPNNANELLVGKALKQFPREKVQLATKFGV 95 (355)
Q Consensus 23 ~lglGt~~~~~~~~~----~~~~~~~~~~l~~A~~---~Gi~~~DtA~~Yg~~g~sE~~lg~~L~~~~R~~~~i~tK~~~ 95 (355)
.+|==|.++-+ |+. .++.++..+++....+ .=+-.+|..+..++ -...+-+.+. ...-++|.+|+-.
T Consensus 29 ~~C~RC~~l~h-y~~~~~~~~~~e~f~~~l~~~~~~~~~Il~VvD~~d~~~s---~~~~l~~~~~--~~piilV~NK~DL 102 (360)
T TIGR03597 29 VYCQRCFRLKH-YNEIQDVELNDDDFLNLLNSLGDSNALIVYVVDIFDFEGS---LIPELKRFVG--GNPVLLVGNKIDL 102 (360)
T ss_pred eeecchhhhhc-cCccccCCCCHHHHHHHHhhcccCCcEEEEEEECcCCCCC---ccHHHHHHhC--CCCEEEEEEchhh
Confidence 44444555433 332 2456677777666643 22346786555443 2223333443 3456789999864
Q ss_pred cccCCCCcccCCCHHHHHHHHHHHHHHcCCCcccEEEeccCCCCCCHHHHHHHHHHHHHcCccceeecCCCCHH-HHHHH
Q 018482 96 VKFDVSGLVINGTPEYVRACCEASLKRLDVEYIDLYYQHRVDTTVPIEDTMGELKKLVDEGKIKYIGLSEASPD-TIRRA 174 (355)
Q Consensus 96 ~~~~~~~~~~~~s~~~i~~~~~~sL~~L~~d~iDl~~lh~p~~~~~~~~~~~~L~~l~~~Gkir~iGvS~~~~~-~l~~~ 174 (355)
.. .....+.+.+-+.+.++..|....+++++- ......++++++.+.++.+.+.|-.+|.+|-.-. .+..+
T Consensus 103 l~-------k~~~~~~~~~~l~~~~k~~g~~~~~i~~vS-Ak~g~gv~eL~~~l~~~~~~~~v~~vG~~nvGKStliN~l 174 (360)
T TIGR03597 103 LP-------KSVNLSKIKEWMKKRAKELGLKPVDIILVS-AKKGNGIDELLDKIKKARNKKDVYVVGVTNVGKSSLINKL 174 (360)
T ss_pred CC-------CCCCHHHHHHHHHHHHHHcCCCcCcEEEec-CCCCCCHHHHHHHHHHHhCCCeEEEECCCCCCHHHHHHHH
Confidence 32 123456666666666777776544666654 3444568899999988877678889999997543 34444
Q ss_pred hh
Q 018482 175 HA 176 (355)
Q Consensus 175 ~~ 176 (355)
+.
T Consensus 175 ~~ 176 (360)
T TIGR03597 175 LK 176 (360)
T ss_pred Hh
Confidence 43
No 114
>PF04476 DUF556: Protein of unknown function (DUF556); InterPro: IPR007565 The proteins in this entry are functionally uncharacterised.
Probab=40.22 E-value=2.8e+02 Score=25.01 Aligned_cols=154 Identities=14% Similarity=0.182 Sum_probs=86.8
Q ss_pred CHHHHHHHHHHHHHcCCCeEeCcc-CcCC-CChhHHHHHHHHhcCCCCCEEEEeeccccccCCCCcccCCCHHHHHHHHH
Q 018482 40 PDEVGISIIKHAFDQGITFFDTAD-VYGP-NNANELLVGKALKQFPREKVQLATKFGVVKFDVSGLVINGTPEYVRACCE 117 (355)
Q Consensus 40 ~~~~~~~~l~~A~~~Gi~~~DtA~-~Yg~-~g~sE~~lg~~L~~~~R~~~~i~tK~~~~~~~~~~~~~~~s~~~i~~~~~ 117 (355)
+.+|+ ..|++.|...||.=+ .-|. +.....++.+..+. -..+.-+|..+|-.. +.+..+..+..
T Consensus 9 ~~~EA----~~a~~~gaDiID~K~P~~GaLGA~~~~vi~~i~~~-~~~~~pvSAtiGDlp---------~~p~~~~~aa~ 74 (235)
T PF04476_consen 9 NVEEA----EEALAGGADIIDLKNPAEGALGALFPWVIREIVAA-VPGRKPVSATIGDLP---------MKPGTASLAAL 74 (235)
T ss_pred CHHHH----HHHHhCCCCEEEccCCCCCCCCCCCHHHHHHHHHH-cCCCCceEEEecCCC---------CCchHHHHHHH
Confidence 56666 568899999999642 2332 12344555544443 233466788877443 34555555554
Q ss_pred HHHHHcCCCcccEEEeccCCCCCCHHHHH----HHHHHHHHcCccceeecCCCC------HHHHHHHhhcCCceeecccc
Q 018482 118 ASLKRLDVEYIDLYYQHRVDTTVPIEDTM----GELKKLVDEGKIKYIGLSEAS------PDTIRRAHAVHPVTALQMEW 187 (355)
Q Consensus 118 ~sL~~L~~d~iDl~~lh~p~~~~~~~~~~----~~L~~l~~~Gkir~iGvS~~~------~~~l~~~~~~~~~~~~q~~~ 187 (355)
..- .-|+||+-+=+.-..+.+.. .+.| +++.++-.+.++-..+++.+. +..+-+.....+++.+++.-
T Consensus 75 ~~a-~~GvdyvKvGl~g~~~~~~a-~e~l~~v~~av~~~~~~~~vVAv~yAD~~r~~~~~p~~l~~~a~~aG~~gvMlDT 152 (235)
T PF04476_consen 75 GAA-ATGVDYVKVGLFGCKDYDEA-IEALEAVVRAVKDFDPDKKVVAVGYADAQRVGSISPLDLPEIAAEAGFDGVMLDT 152 (235)
T ss_pred HHH-hcCCCEEEEecCCCCCHHHH-HHHHHHHHHHHhhhCCCcEEEEEEecchhhhcCCCHHHHHHHHHHcCCCEEEEec
Confidence 444 34888888876643322111 1222 223333334567777888773 44566666666778777632
Q ss_pred c------cccc---hhhhchHHHHHHhCCcE
Q 018482 188 S------LWTR---AIEDEIVPLCRELGIGI 209 (355)
Q Consensus 188 n------~~~~---~~~~~~~~~~~~~gi~v 209 (355)
- ++.. ....+.++.|+.+|+.+
T Consensus 153 a~Kdg~~L~d~~~~~~L~~Fv~~ar~~gL~~ 183 (235)
T PF04476_consen 153 ADKDGGSLFDHLSEEELAEFVAQARAHGLMC 183 (235)
T ss_pred ccCCCCchhhcCCHHHHHHHHHHHHHccchh
Confidence 2 2221 11267788888888765
No 115
>cd04728 ThiG Thiazole synthase (ThiG) is the tetrameric enzyme that is involved in the formation of the thiazole moiety of thiamin pyrophosphate, an essential ubiquitous cofactor that plays an important role in carbohydrate and amino acid metabolism. ThiG catalyzes the formation of thiazole from 1-deoxy-D-xylulose 5-phosphate (DXP) and dehydroglycine, with the help of the sulfur carrier protein ThiS that carries the sulfur needed for thiazole assembly on its carboxy terminus (ThiS-COSH).
Probab=40.17 E-value=2.9e+02 Score=25.15 Aligned_cols=105 Identities=15% Similarity=0.073 Sum_probs=69.2
Q ss_pred CCCHHHHHHHHHHHHHHcCCCcccEEEeccCCCCC-CHHHHHHHHHHHHHcCccceeecCCCCHHHHHHHhhcCCceeec
Q 018482 106 NGTPEYVRACCEASLKRLDVEYIDLYYQHRVDTTV-PIEDTMGELKKLVDEGKIKYIGLSEASPDTIRRAHAVHPVTALQ 184 (355)
Q Consensus 106 ~~s~~~i~~~~~~sL~~L~~d~iDl~~lh~p~~~~-~~~~~~~~L~~l~~~Gkir~iGvS~~~~~~l~~~~~~~~~~~~q 184 (355)
.++.+...+-.+-..+-++++.|-|=.+..+.... +..+++++.+.|+++|.+-. =+++-++...+.+.+. +++.++
T Consensus 72 ~~ta~eAv~~a~lare~~~~~~iKlEVi~d~~~Llpd~~~tv~aa~~L~~~Gf~vl-pyc~dd~~~ar~l~~~-G~~~vm 149 (248)
T cd04728 72 CRTAEEAVRTARLAREALGTDWIKLEVIGDDKTLLPDPIETLKAAEILVKEGFTVL-PYCTDDPVLAKRLEDA-GCAAVM 149 (248)
T ss_pred CCCHHHHHHHHHHHHHHhCCCeEEEEEecCccccccCHHHHHHHHHHHHHCCCEEE-EEeCCCHHHHHHHHHc-CCCEeC
Confidence 46788888888888888899999988887766543 57899999999999998543 2555567777666665 445553
Q ss_pred cccccccc--hh-hhchHHHHHH-hCCcEEec
Q 018482 185 MEWSLWTR--AI-EDEIVPLCRE-LGIGIVPY 212 (355)
Q Consensus 185 ~~~n~~~~--~~-~~~~~~~~~~-~gi~v~a~ 212 (355)
.-=.+.-. .. ..++++...+ .++.|++-
T Consensus 150 Plg~pIGsg~Gi~~~~~I~~I~e~~~vpVI~e 181 (248)
T cd04728 150 PLGSPIGSGQGLLNPYNLRIIIERADVPVIVD 181 (248)
T ss_pred CCCcCCCCCCCCCCHHHHHHHHHhCCCcEEEe
Confidence 31111111 11 1345555555 46777663
No 116
>cd02801 DUS_like_FMN Dihydrouridine synthase-like (DUS-like) FMN-binding domain. Members of this family catalyze the reduction of the 5,6-double bond of a uridine residue on tRNA. Dihydrouridine modification of tRNA is widely observed in prokaryotes and eukaryotes, and also in some archaea. Most dihydrouridines are found in the D loop of t-RNAs. The role of dihydrouridine in tRNA is currently unknown, but may increase conformational flexibility of the tRNA. It is likely that different family members have different substrate specificities, which may overlap. 1VHN, a putative flavin oxidoreductase, has high sequence similarity to DUS. The enzymatic mechanism of 1VHN is not known at the present.
Probab=40.16 E-value=2.6e+02 Score=24.50 Aligned_cols=135 Identities=12% Similarity=0.025 Sum_probs=75.1
Q ss_pred CHHHHHHHHHHHHHcCCCeEeCc----------cCcCCC-ChhHHHHHHHHhcCCC-CCEEEEeeccccccCCCCcccCC
Q 018482 40 PDEVGISIIKHAFDQGITFFDTA----------DVYGPN-NANELLVGKALKQFPR-EKVQLATKFGVVKFDVSGLVING 107 (355)
Q Consensus 40 ~~~~~~~~l~~A~~~Gi~~~DtA----------~~Yg~~-g~sE~~lg~~L~~~~R-~~~~i~tK~~~~~~~~~~~~~~~ 107 (355)
+.++..+..+.+.++|+..||-- +.||.. ...-+.+-+.++..+. -.+-|+.|+...+. .
T Consensus 65 ~~~~~~~aa~~~~~aG~d~ieln~g~p~~~~~~~~~G~~l~~~~~~~~eii~~v~~~~~~~v~vk~r~~~~--------~ 136 (231)
T cd02801 65 DPETLAEAAKIVEELGADGIDLNMGCPSPKVTKGGAGAALLKDPELVAEIVRAVREAVPIPVTVKIRLGWD--------D 136 (231)
T ss_pred CHHHHHHHHHHHHhcCCCEEEEeCCCCHHHHhCCCeeehhcCCHHHHHHHHHHHHHhcCCCEEEEEeeccC--------C
Confidence 66788888888889999999853 345520 0123344455544211 11446666643220 0
Q ss_pred CHHHHHHHHHHHHHHcCCCcccEEEeccCCCCC--CHHHHHHHHHHHHHcCccceeecCCC-CHHHHHHHhhcCCceeec
Q 018482 108 TPEYVRACCEASLKRLDVEYIDLYYQHRVDTTV--PIEDTMGELKKLVDEGKIKYIGLSEA-SPDTIRRAHAVHPVTALQ 184 (355)
Q Consensus 108 s~~~i~~~~~~sL~~L~~d~iDl~~lh~p~~~~--~~~~~~~~L~~l~~~Gkir~iGvS~~-~~~~l~~~~~~~~~~~~q 184 (355)
. +...+ +-+.|+..|+ |.+.+|...... .....|+.+..+++.-.+.-++.... +.+.+.++++....+.++
T Consensus 137 ~-~~~~~-~~~~l~~~Gv---d~i~v~~~~~~~~~~~~~~~~~~~~i~~~~~ipvi~~Ggi~~~~d~~~~l~~~gad~V~ 211 (231)
T cd02801 137 E-EETLE-LAKALEDAGA---SALTVHGRTREQRYSGPADWDYIAEIKEAVSIPVIANGDIFSLEDALRCLEQTGVDGVM 211 (231)
T ss_pred c-hHHHH-HHHHHHHhCC---CEEEECCCCHHHcCCCCCCHHHHHHHHhCCCCeEEEeCCCCCHHHHHHHHHhcCCCEEE
Confidence 0 12222 2334555665 556677653211 11224667777777666766666554 677777777766677777
Q ss_pred ccc
Q 018482 185 MEW 187 (355)
Q Consensus 185 ~~~ 187 (355)
+--
T Consensus 212 igr 214 (231)
T cd02801 212 IGR 214 (231)
T ss_pred EcH
Confidence 643
No 117
>TIGR02668 moaA_archaeal probable molybdenum cofactor biosynthesis protein A, archaeal. This model describes an archaeal family related, and predicted to be functionally equivalent, to molybdenum cofactor biosynthesis protein A (MoaA) of bacteria (see TIGR02666).
Probab=39.96 E-value=3e+02 Score=25.33 Aligned_cols=99 Identities=14% Similarity=0.194 Sum_probs=54.0
Q ss_pred CCCHHHHHHHHHHHHHcCCCeEeCccCcCCC---ChhHHHHHHHHhcCCCCCEEEEeeccccccCCCCcccCCCHHHHHH
Q 018482 38 PVPDEVGISIIKHAFDQGITFFDTADVYGPN---NANELLVGKALKQFPREKVQLATKFGVVKFDVSGLVINGTPEYVRA 114 (355)
Q Consensus 38 ~~~~~~~~~~l~~A~~~Gi~~~DtA~~Yg~~---g~sE~~lg~~L~~~~R~~~~i~tK~~~~~~~~~~~~~~~s~~~i~~ 114 (355)
.++.++..++++.+.+.|+..|.-.. |.. ..-.+++.. +++..-.++.|+|... .+ .
T Consensus 39 ~ls~eei~~~i~~~~~~gi~~I~~tG--GEPll~~~l~~iv~~-l~~~g~~~v~i~TNG~----------------ll-~ 98 (302)
T TIGR02668 39 ELSPEEIERIVRVASEFGVRKVKITG--GEPLLRKDLIEIIRR-IKDYGIKDVSMTTNGI----------------LL-E 98 (302)
T ss_pred cCCHHHHHHHHHHHHHcCCCEEEEEC--cccccccCHHHHHHH-HHhCCCceEEEEcCch----------------HH-H
Confidence 36888999999999999998876431 210 011222222 2222223566666421 11 2
Q ss_pred HHHHHHHHcCCCcccEEEeccCCCC--------CCHHHHHHHHHHHHHcCc
Q 018482 115 CCEASLKRLDVEYIDLYYQHRVDTT--------VPIEDTMGELKKLVDEGK 157 (355)
Q Consensus 115 ~~~~sL~~L~~d~iDl~~lh~p~~~--------~~~~~~~~~L~~l~~~Gk 157 (355)
..-..|.+.|++.+- +-++.++++ ..++.+++.++.+++.|.
T Consensus 99 ~~~~~l~~~g~~~v~-iSld~~~~~~~~~i~~~~~~~~vl~~i~~~~~~G~ 148 (302)
T TIGR02668 99 KLAKKLKEAGLDRVN-VSLDTLDPEKYKKITGRGALDRVIEGIESAVDAGL 148 (302)
T ss_pred HHHHHHHHCCCCEEE-EEecCCCHHHhhhccCCCcHHHHHHHHHHHHHcCC
Confidence 223445666665443 334544321 246778888888888774
No 118
>cd03320 OSBS o-Succinylbenzoate synthase (OSBS) catalyzes the conversion of 2-succinyl-6-hydroxy-2,4-cyclohexadiene-1-carboxylate (SHCHC) to 4-(2'-carboxyphenyl)-4-oxobutyrate (o-succinylbenzoate or OSB), a reaction in the menaquinone biosynthetic pathway. Menaquinone is an essential cofactor for anaerobic growth in eubacteria and some archaea. OSBS belongs to the enolase superfamily of enzymes, characterized by the presence of an enolate anion intermediate which is generated by abstraction of the alpha-proton of the carboxylate substrate by an active site residue and is stabilized by coordination to the essential Mg2+ ion.
Probab=38.94 E-value=1.3e+02 Score=27.28 Aligned_cols=86 Identities=22% Similarity=0.137 Sum_probs=57.1
Q ss_pred ccEEEeccCCCCCCHHHHHHHHHHHHHcCccceeecCCCCHHHHHHHhhcCCceeeccccccccch-hhhchHHHHHHhC
Q 018482 128 IDLYYQHRVDTTVPIEDTMGELKKLVDEGKIKYIGLSEASPDTIRRAHAVHPVTALQMEWSLWTRA-IEDEIVPLCRELG 206 (355)
Q Consensus 128 iDl~~lh~p~~~~~~~~~~~~L~~l~~~Gkir~iGvS~~~~~~l~~~~~~~~~~~~q~~~n~~~~~-~~~~~~~~~~~~g 206 (355)
.++.++..|-+ .+-++.+.++. .+.=-..|=|-++...+..+++...++++|+.....-.- .-..+...|+.+|
T Consensus 153 ~~i~~iEqP~~----~~d~~~~~~l~-~~~PIa~dEs~~~~~~~~~~~~~~~~d~v~~k~~~~GGit~~~~i~~~a~~~g 227 (263)
T cd03320 153 GRIEYIEQPLP----PDDLAELRRLA-AGVPIALDESLRRLDDPLALAAAGALGALVLKPALLGGPRALLELAEEARARG 227 (263)
T ss_pred cCCceEECCCC----hHHHHHHHHhh-cCCCeeeCCccccccCHHHHHhcCCCCEEEECchhcCCHHHHHHHHHHHHHcC
Confidence 46666666643 23456666666 443335566677777888888877889998876543211 1267899999999
Q ss_pred CcEEecccCCcc
Q 018482 207 IGIVPYSPLGRG 218 (355)
Q Consensus 207 i~v~a~spl~~G 218 (355)
+.++..+-+..+
T Consensus 228 i~~~~~~~~es~ 239 (263)
T cd03320 228 IPAVVSSALESS 239 (263)
T ss_pred CCEEEEcchhhH
Confidence 999887555433
No 119
>PRK02901 O-succinylbenzoate synthase; Provisional
Probab=38.92 E-value=2.3e+02 Score=26.94 Aligned_cols=82 Identities=15% Similarity=0.132 Sum_probs=56.2
Q ss_pred cEEEeccCCCCCCHHHHHHHHHHHHHcCcc-ceeecCCCCHHHHHHHhhcCCceeeccccccccchhhhchHHHHHHhCC
Q 018482 129 DLYYQHRVDTTVPIEDTMGELKKLVDEGKI-KYIGLSEASPDTIRRAHAVHPVTALQMEWSLWTRAIEDEIVPLCRELGI 207 (355)
Q Consensus 129 Dl~~lh~p~~~~~~~~~~~~L~~l~~~Gki-r~iGvS~~~~~~l~~~~~~~~~~~~q~~~n~~~~~~~~~~~~~~~~~gi 207 (355)
++.++..|-. .++.+.+|++.-.+ -+.|=|.++...+..+++....+++|+..+.+-. . .+.++.|+++||
T Consensus 162 ~l~~iEqP~~------~~~~la~Lr~~~~vPIA~DEs~~~~~d~~~l~~~~a~dvi~ik~~~~GG-i-t~~lkiA~~~gi 233 (327)
T PRK02901 162 PLEYVEQPCA------TVEELAELRRRVGVPIAADESIRRAEDPLRVARAGAADVAVLKVAPLGG-V-RAALDIAEQIGL 233 (327)
T ss_pred CceEEecCCC------CHHHHHHHHHhCCCCEEeCCCCCCHHHHHHHHHcCCCCEEEeCcchhCC-H-HHHHHHHHHcCC
Confidence 5555555532 15666666665333 2445566788888888888889999998776433 2 457778999999
Q ss_pred cEEecccCCcc
Q 018482 208 GIVPYSPLGRG 218 (355)
Q Consensus 208 ~v~a~spl~~G 218 (355)
.++..|.+..+
T Consensus 234 ~v~v~s~~es~ 244 (327)
T PRK02901 234 PVVVSSALDTS 244 (327)
T ss_pred cEEEeCCcccH
Confidence 99988777544
No 120
>PRK05406 LamB/YcsF family protein; Provisional
Probab=38.69 E-value=1.2e+02 Score=27.55 Aligned_cols=82 Identities=16% Similarity=0.235 Sum_probs=51.9
Q ss_pred eeccccCCCCCCCCCCHHHHHHHHHHH-HHcCCCeEeCccCcCCCChhHHHHHHHHhcCCCCCEEEEeeccccccCC-CC
Q 018482 25 GFGCMGLTGMYNDPVPDEVGISIIKHA-FDQGITFFDTADVYGPNNANELLVGKALKQFPREKVQLATKFGVVKFDV-SG 102 (355)
Q Consensus 25 glGt~~~~~~~~~~~~~~~~~~~l~~A-~~~Gi~~~DtA~~Yg~~g~sE~~lg~~L~~~~R~~~~i~tK~~~~~~~~-~~ 102 (355)
+||.|++| ++++...+|..| +.+|+ +.|+ ...+-+.++-.....|-|-.--++.+..+ ++
T Consensus 13 ~fG~w~~g-------~D~~lmp~IssANIACG~-------HAGD----p~~M~~tv~lA~~~gV~IGAHPgypD~~gFGR 74 (246)
T PRK05406 13 SFGAWKMG-------DDEALLPLVTSANIACGF-------HAGD----PAVMRRTVRLAKENGVAIGAHPGYPDLEGFGR 74 (246)
T ss_pred CCCCCCCC-------CHHHHHHHhhhHHHhccc-------cCCC----HHHHHHHHHHHHHcCCeEccCCCCCccCCCCC
Confidence 67888765 457778888888 57887 6774 34455555443446666766655443222 22
Q ss_pred cccCCCHHHHHHHHHHHHHHcC
Q 018482 103 LVINGTPEYVRACCEASLKRLD 124 (355)
Q Consensus 103 ~~~~~s~~~i~~~~~~sL~~L~ 124 (355)
-..+.+++.++..+..++..|.
T Consensus 75 R~m~~s~~el~~~v~yQigAL~ 96 (246)
T PRK05406 75 RNMDLSPEELYALVLYQIGALQ 96 (246)
T ss_pred CCCCCCHHHHHHHHHHHHHHHH
Confidence 2345788888888877777664
No 121
>PRK06424 transcription factor; Provisional
Probab=38.38 E-value=97 Score=25.68 Aligned_cols=111 Identities=14% Similarity=0.093 Sum_probs=53.8
Q ss_pred hhchHHHHHHhCCcEEec---ccCCcc--cCC-CCC-CCCCCCCccccccCCCCCCcchhhhHHHHHHHHHHHHHcCCCH
Q 018482 195 EDEIVPLCRELGIGIVPY---SPLGRG--FFG-GKA-SVESLPASSILTWHPRFSGENIDKNKILYLRLQKLAEKHECNP 267 (355)
Q Consensus 195 ~~~~~~~~~~~gi~v~a~---spl~~G--~L~-g~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~la~~~~~s~ 267 (355)
+-.+=+-|.+.|..|..+ +|...- .-. +.. ......... .+....+.+...+........|..+.++.|+|.
T Consensus 22 ~l~vC~~Ca~~G~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~d~~~~~~~~~~~~g~~Ir~lRe~~GLSQ 100 (144)
T PRK06424 22 ILNVCDDCAKFGTPVIEHNKFKEVKEDIKVKLPEKKIIVPTYKKAY-KKYKKKASDEDLDIVEDYAELVKNARERLSMSQ 100 (144)
T ss_pred eeehhHHHHHcCCcccccCCCCcccccccccCccccccccccccCC-CCccCcccHHHHHHHHHHHHHHHHHHHHcCCCH
Confidence 356778899999999988 555320 000 000 000000000 000011111111223445567777788889999
Q ss_pred HHHHHHHHhhCCCCeeeecCCC--CHHHHHHHHhccCCCCC
Q 018482 268 AQLALAWILHQGDDVAPIPGTT--KIKNLDDNIGSLRVKLT 306 (355)
Q Consensus 268 ~qlal~~~l~~~~v~~vIvG~~--~~~~l~~nl~a~~~~Lt 306 (355)
.++|-+--+++..|+-.--|-+ +.+.+....++++..|+
T Consensus 101 ~eLA~~iGvs~stIskiE~G~~~Ps~~~l~kLa~~Lgvsl~ 141 (144)
T PRK06424 101 ADLAAKIFERKNVIASIERGDLLPDIKTARKLEKILGITLI 141 (144)
T ss_pred HHHHHHhCCCHHHHHHHHCCCCCCCHHHHHHHHHHhCCCCC
Confidence 9988766554443333333332 34444555555555544
No 122
>TIGR03247 glucar-dehydr glucarate dehydratase. Glucarate dehydratase converts D-glucarate (and L-idarate, a stereoisomer) to 5-dehydro-4-deoxyglucarate which is subsequently acted on by GarL, tartronate semialdehyde reductase and glycerate kinase (, GenProp0716). The E. coli enzyme has been well-characterized.
Probab=38.23 E-value=1.8e+02 Score=28.93 Aligned_cols=86 Identities=10% Similarity=0.073 Sum_probs=56.3
Q ss_pred EEEeccCCCCCCHHHHHHHHHHHHHcCccc-eeecCCCCHHHHHHHhhcCCceeeccccccccchhhhchHHHHHHhCCc
Q 018482 130 LYYQHRVDTTVPIEDTMGELKKLVDEGKIK-YIGLSEASPDTIRRAHAVHPVTALQMEWSLWTRAIEDEIVPLCRELGIG 208 (355)
Q Consensus 130 l~~lh~p~~~~~~~~~~~~L~~l~~~Gkir-~iGvS~~~~~~l~~~~~~~~~~~~q~~~n~~~~~~~~~~~~~~~~~gi~ 208 (355)
+.++..|-+..+..+-++.+.+|.+...|. ..|-+.++...+..+++...++++|......--.....+.+.|+.+|+.
T Consensus 252 ~~~iEePv~~~d~~~~~~~la~Lr~~~~iPIa~dEs~~~~~~~~~li~~~avdi~~~d~~~gGIt~~~kIa~lA~a~Gi~ 331 (441)
T TIGR03247 252 LAYAEDPCGAEQGYSGREVMAEFRRATGLPTATNMIATDWRQMGHALQLQAVDIPLADPHFWTMQGSVRVAQMCHDWGLT 331 (441)
T ss_pred hceEeCCCCcccccchHHHHHHHHHhCCCCEEcCCccCCHHHHHHHHHhCCCCEEeccCCcchHHHHHHHHHHHHHcCCE
Confidence 446666643222112367778887765443 3466778889999999888888988875321111126889999999999
Q ss_pred EEecccC
Q 018482 209 IVPYSPL 215 (355)
Q Consensus 209 v~a~spl 215 (355)
+..++..
T Consensus 332 v~~h~~~ 338 (441)
T TIGR03247 332 WGSHSNN 338 (441)
T ss_pred EEEeCCc
Confidence 8776543
No 123
>cd01974 Nitrogenase_MoFe_beta Nitrogenase_MoFe_beta: Nitrogenase MoFe protein, beta subunit. The nitrogenase enzyme catalyzes the ATP-dependent reduction of dinitrogen to ammonia. The Molybdenum (Mo-) nitrogenase is the most widespread and best characterized of these systems. Mo-nitrogenase consists of the MoFe protein (component 1) and the Fe protein (component 2). MoFe is an alpha2beta2 tetramer. This group contains the beta subunit of the MoFe protein. Each alphabeta pair of MoFe contains one P-cluster (at the alphabeta interface) and, one molecule of iron molybdenum cofactor (FeMoco) contained within the alpha subunit. The Fe protein contains a single [4Fe-4S] cluster. Electrons are transferred from the [4Fe-4S] cluster of the Fe protein to the P-cluster of the MoFe and in turn to FeMoCo, the site of substrate reduction.
Probab=38.19 E-value=4e+02 Score=26.23 Aligned_cols=108 Identities=12% Similarity=0.159 Sum_probs=55.9
Q ss_pred cCcCCCChhHHHHHHHHhc----CCCCCEEEEeeccccccCCCCcccCCCHHHHHHHHHHHHHHcCC-CcccEEEeccCC
Q 018482 63 DVYGPNNANELLVGKALKQ----FPREKVQLATKFGVVKFDVSGLVINGTPEYVRACCEASLKRLDV-EYIDLYYQHRVD 137 (355)
Q Consensus 63 ~~Yg~~g~sE~~lg~~L~~----~~R~~~~i~tK~~~~~~~~~~~~~~~s~~~i~~~~~~sL~~L~~-d~iDl~~lh~p~ 137 (355)
-.|| .|+-|-+++.+ .+.+-++|.|-+-... --+++..-+++.-++... ..+.++.++.|.
T Consensus 65 ~V~G----g~~~L~~ai~~~~~~~~p~~I~v~ttC~~~i----------iGdDi~~v~~~~~~~~~~~~~~~vi~v~tpg 130 (435)
T cd01974 65 AVFG----GQNNLIDGLKNAYAVYKPDMIAVSTTCMAEV----------IGDDLNAFIKNAKNKGSIPADFPVPFANTPS 130 (435)
T ss_pred eEEC----cHHHHHHHHHHHHHhcCCCEEEEeCCchHhh----------hhccHHHHHHHHHHhccCCCCCeEEEecCCC
Confidence 4677 35666666665 3444466666654322 112233333333333311 147899999886
Q ss_pred CCCC----HHHHHHHHHH-HHH-------cCccceee-cCCC-C-HHHHHHHhhcCCceeec
Q 018482 138 TTVP----IEDTMGELKK-LVD-------EGKIKYIG-LSEA-S-PDTIRRAHAVHPVTALQ 184 (355)
Q Consensus 138 ~~~~----~~~~~~~L~~-l~~-------~Gkir~iG-vS~~-~-~~~l~~~~~~~~~~~~q 184 (355)
.... .+.++++|-+ +.. .++|--|| ..+. + .++++++++..++.++.
T Consensus 131 f~gs~~~G~~~a~~al~~~l~~~~~~~~~~~~VNli~~~~~~~d~~~el~~lL~~~Gl~~~~ 192 (435)
T cd01974 131 FVGSHITGYDNMVKGILTHLTEGSGGAGKNGKLNIIPGFDTYAGNMREIKRLLELMGVDYTI 192 (435)
T ss_pred CccCHHHHHHHHHHHHHHHHhcccCCCCCCCeEEEECCCCCCcchHHHHHHHHHHcCCCEEE
Confidence 5432 2334444432 222 23466665 2222 3 67888888887766653
No 124
>TIGR01278 DPOR_BchB light-independent protochlorophyllide reductase, B subunit. This enzyme describes the B subunit of the dark form protochlorophyllide reductase, a nitrogenase-like enzyme. This subunit shows homology to the nitrogenase molybdenum-iron protein. It catalyzes a step in bacteriochlorophyll biosynthesis.
Probab=38.15 E-value=4.4e+02 Score=26.66 Aligned_cols=101 Identities=6% Similarity=0.081 Sum_probs=56.0
Q ss_pred hHHHHHHHHhc----CCCCCEEEEeeccccccCCCCcccCCCHHHHHHHHHHHHHHcCCCcccEEEeccCCCCCCH----
Q 018482 71 NELLVGKALKQ----FPREKVQLATKFGVVKFDVSGLVINGTPEYVRACCEASLKRLDVEYIDLYYQHRVDTTVPI---- 142 (355)
Q Consensus 71 sE~~lg~~L~~----~~R~~~~i~tK~~~~~~~~~~~~~~~s~~~i~~~~~~sL~~L~~d~iDl~~lh~p~~~~~~---- 142 (355)
+++.|-+++.+ .+.+-++|.+-+. ++-|-..++...+.++.+.++++.++.|......
T Consensus 69 ~~~~L~~aI~~~~~~~~P~~I~V~sTC~--------------selIGdDi~~~~~~~~~~~~pvi~v~t~gf~g~~~~g~ 134 (511)
T TIGR01278 69 SQTRLVDTVRRVDDRFKPDLIVVTPSCT--------------SSLLQEDLGNLAAAAGLDKSKVIVADVNAYRRKENQAA 134 (511)
T ss_pred hHHHHHHHHHHHHHhcCCCEEEEeCCCh--------------HHHhccCHHHHHHHhccCCCcEEEecCCCcccchhHHH
Confidence 45566666655 2333455555542 2333344444455555445789999998654332
Q ss_pred HHHHHHHHH-H----------HHcCccceeecCCC------CHHHHHHHhhcCCceeecc
Q 018482 143 EDTMGELKK-L----------VDEGKIKYIGLSEA------SPDTIRRAHAVHPVTALQM 185 (355)
Q Consensus 143 ~~~~~~L~~-l----------~~~Gkir~iGvS~~------~~~~l~~~~~~~~~~~~q~ 185 (355)
..++..+-+ + .+.+.|--||.++. +..+++.+++..++.++.+
T Consensus 135 ~~al~~lv~~~~~~~~~~~~~~~~~~VNIiG~~~l~~~~~~D~~elkrlL~~lGi~vn~v 194 (511)
T TIGR01278 135 DRTLTQLVRRFAKEQPKPGRTTEKPSVNLLGPASLGFHHRHDLIELRRLLKTLGIEVNVV 194 (511)
T ss_pred HHHHHHHHHHHHhccccccccCCCCcEEEEeCCCCCCCCHHHHHHHHHHHHHCCCeEEEE
Confidence 223322221 1 12356888888762 4567888888777666543
No 125
>PF00682 HMGL-like: HMGL-like of this family is not conserved in other members. are a sub-families of this Pfam.; InterPro: IPR000891 Pyruvate carboxylase (6.4.1.1 from EC) (PC), a member of the biotin-dependent enzyme family, is involved in the gluconeogenesis by mediating the carboxylation of pyruvate to oxaloacetate. Biotin-dependent carboxylase enzymes perform a two step reaction. Enzyme-bound biotin is first carboxylated by bicarbonate and ATP and the carboxyl group temporarily bound to biotin is subsequently transferred to an acceptor substrate such as pyruvate []. PC has three functional domains: a biotin carboxylase (BC) domain, a carboxyltransferase (CT) domain which perform the second part of the reaction and a biotinyl domain [, ]. The mechanism by which the carboxyl group is transferred from the carboxybiotin to the pyruvate is not well understood. The pyruvate carboxyltransferase domain is also found in other pyruvate binding enzymes and acetyl-CoA dependent enzymes suggesting that this domain can be associated with different enzymatic activities. This domain is found towards the N-terminal region of various aldolase enzymes. This N-terminal TIM barrel domain [] interacts with the C-terminal domain. The C-terminal DmpG_comm domain (IPR012425 from INTERPRO) is thought to promote heterodimerisation with members of IPR003361 from INTERPRO to form a bifunctional aldolase-dehydrogenase []. ; GO: 0003824 catalytic activity; PDB: 3MP5_E 3MP3_E 2CW6_E 3MP4_D 3HBL_A 3HB9_C 3HO8_A 3BG5_C 1YDN_B 3RMJ_A ....
Probab=38.01 E-value=1.5e+02 Score=26.18 Aligned_cols=97 Identities=18% Similarity=0.184 Sum_probs=54.7
Q ss_pred CCHHHHHHHHHHHHHHcCCCcccEEEeccCCCCCCHHHHHHHHHHHHHcCccceeecCCCCHHHHHHHhh---cCCceee
Q 018482 107 GTPEYVRACCEASLKRLDVEYIDLYYQHRVDTTVPIEDTMGELKKLVDEGKIKYIGLSEASPDTIRRAHA---VHPVTAL 183 (355)
Q Consensus 107 ~s~~~i~~~~~~sL~~L~~d~iDl~~lh~p~~~~~~~~~~~~L~~l~~~Gkir~iGvS~~~~~~l~~~~~---~~~~~~~ 183 (355)
++.+ .+..+-+.|.++|+++|++- .|.......+.++.+.+.... .+..+++......++.+.+ ..+++.+
T Consensus 11 ~~~~-~k~~i~~~L~~~Gv~~iEvg---~~~~~~~~~~~v~~~~~~~~~--~~~~~~~~~~~~~i~~~~~~~~~~g~~~i 84 (237)
T PF00682_consen 11 FSTE-EKLEIAKALDEAGVDYIEVG---FPFASEDDFEQVRRLREALPN--ARLQALCRANEEDIERAVEAAKEAGIDII 84 (237)
T ss_dssp --HH-HHHHHHHHHHHHTTSEEEEE---HCTSSHHHHHHHHHHHHHHHS--SEEEEEEESCHHHHHHHHHHHHHTTSSEE
T ss_pred cCHH-HHHHHHHHHHHhCCCEEEEc---ccccCHHHHHHhhhhhhhhcc--cccceeeeehHHHHHHHHHhhHhccCCEE
Confidence 4444 45555667999999998888 332222223445555555555 4444555556666666443 2445555
Q ss_pred cccccccc--------------chhhhchHHHHHHhCCcE
Q 018482 184 QMEWSLWT--------------RAIEDEIVPLCRELGIGI 209 (355)
Q Consensus 184 q~~~n~~~--------------~~~~~~~~~~~~~~gi~v 209 (355)
.+..+.-. ...-.+.+.++++.|+.+
T Consensus 85 ~i~~~~s~~~~~~~~~~~~~~~~~~~~~~v~~ak~~g~~v 124 (237)
T PF00682_consen 85 RIFISVSDLHIRKNLNKSREEALERIEEAVKYAKELGYEV 124 (237)
T ss_dssp EEEEETSHHHHHHHTCSHHHHHHHHHHHHHHHHHHTTSEE
T ss_pred EecCcccHHHHHHhhcCCHHHHHHHHHHHHHHHHhcCCce
Confidence 54333322 011167889999999998
No 126
>PRK13803 bifunctional phosphoribosylanthranilate isomerase/tryptophan synthase subunit beta; Provisional
Probab=37.79 E-value=89 Score=32.50 Aligned_cols=68 Identities=10% Similarity=0.130 Sum_probs=47.1
Q ss_pred HHcCCCcccEEEeccCCCCCCHHHHHHHHHHHHHcCccceeecC-CCCHHHHHHHhhcCCceeeccccc
Q 018482 121 KRLDVEYIDLYYQHRVDTTVPIEDTMGELKKLVDEGKIKYIGLS-EASPDTIRRAHAVHPVTALQMEWS 188 (355)
Q Consensus 121 ~~L~~d~iDl~~lh~p~~~~~~~~~~~~L~~l~~~Gkir~iGvS-~~~~~~l~~~~~~~~~~~~q~~~n 188 (355)
..+|.|++=+++........+.+.....+.+......++.+||- |.+.+.+.++.+...++++|+.-+
T Consensus 20 ~~~gaD~iGfIf~~~SpR~V~~~~~a~~i~~~l~~~~v~~VgVfv~~~~~~i~~~~~~~~ld~vQLHG~ 88 (610)
T PRK13803 20 VDMLPDFIGFIFYEKSPRFVGNKFLAPNLEKAIRKAGGRPVGVFVNESAKAMLKFSKKNGIDFVQLHGA 88 (610)
T ss_pred HHcCCCEEEEEecCCCCCCCCHHHHHHHHHHhCCCCCCCEEEEEeCCCHHHHHHHHHhcCCCEEEECCC
Confidence 55899999988666544445555523333333322357789995 778999999999899999999644
No 127
>PRK01045 ispH 4-hydroxy-3-methylbut-2-enyl diphosphate reductase; Reviewed
Probab=37.74 E-value=1.7e+02 Score=27.39 Aligned_cols=108 Identities=16% Similarity=0.144 Sum_probs=64.3
Q ss_pred CccceeecCCCCHHHHHHHhhcC--Cc-eeeccccc---cccchhhhchHHHHHHhCCcEEecccCCcccCCCCCCCCCC
Q 018482 156 GKIKYIGLSEASPDTIRRAHAVH--PV-TALQMEWS---LWTRAIEDEIVPLCRELGIGIVPYSPLGRGFFGGKASVESL 229 (355)
Q Consensus 156 Gkir~iGvS~~~~~~l~~~~~~~--~~-~~~q~~~n---~~~~~~~~~~~~~~~~~gi~v~a~spl~~G~L~g~~~~~~~ 229 (355)
.++-.+--++++.+.++++.+.. ++ .+....+| ..+..-+..+.+++++.+.-++.-++-+. +
T Consensus 156 ~~v~vvsQTT~~~~~~~~i~~~l~~~~~~~~v~~~nTIC~aT~~RQ~a~~~La~~vD~miVVGg~~Ss-----N------ 224 (298)
T PRK01045 156 DKLALVTQTTLSVDDTAEIIAALKERFPEIQGPPKDDICYATQNRQEAVKELAPQADLVIVVGSKNSS-----N------ 224 (298)
T ss_pred CcEEEEEcCCCcHHHHHHHHHHHHHhCcCcccCCCCCcchhhHHHHHHHHHHHhhCCEEEEECCCCCc-----c------
Confidence 55666666677777666554431 11 11110111 11222246778888888877765322211 1
Q ss_pred CCccccccCCCCCCcchhhhHHHHHHHHHHHHHcCC------CHHHHHHHHHhhCCCCeeeecCCCCHHHHHHHH
Q 018482 230 PASSILTWHPRFSGENIDKNKILYLRLQKLAEKHEC------NPAQLALAWILHQGDDVAPIPGTTKIKNLDDNI 298 (355)
Q Consensus 230 ~~~~~~~~~~~~~~~~~~~~~~~~~~l~~la~~~~~------s~~qlal~~~l~~~~v~~vIvG~~~~~~l~~nl 298 (355)
-.+|.++|++.+. ++.++-..|+..... ..+.-|+|+|+.+-+.+
T Consensus 225 -----------------------T~kL~~i~~~~~~~t~~Ie~~~el~~~~l~~~~~-VGitaGASTP~~li~eV 275 (298)
T PRK01045 225 -----------------------SNRLREVAEEAGAPAYLIDDASEIDPEWFKGVKT-VGVTAGASAPEWLVQEV 275 (298)
T ss_pred -----------------------HHHHHHHHHHHCCCEEEECChHHCcHHHhcCCCE-EEEEecCCCCHHHHHHH
Confidence 0478888988763 789999999976654 56778999999665543
No 128
>PF14871 GHL6: Hypothetical glycosyl hydrolase 6
Probab=37.35 E-value=55 Score=26.62 Aligned_cols=25 Identities=32% Similarity=0.525 Sum_probs=21.1
Q ss_pred chhhhchHHHHHHhCCcEEecccCC
Q 018482 192 RAIEDEIVPLCRELGIGIVPYSPLG 216 (355)
Q Consensus 192 ~~~~~~~~~~~~~~gi~v~a~spl~ 216 (355)
+....++++.|++.||.|++|-.+.
T Consensus 43 ~Dllge~v~a~h~~Girv~ay~~~~ 67 (132)
T PF14871_consen 43 RDLLGEQVEACHERGIRVPAYFDFS 67 (132)
T ss_pred cCHHHHHHHHHHHCCCEEEEEEeee
Confidence 3344889999999999999998875
No 129
>PLN02746 hydroxymethylglutaryl-CoA lyase
Probab=37.25 E-value=1e+02 Score=29.63 Aligned_cols=99 Identities=10% Similarity=0.046 Sum_probs=57.8
Q ss_pred CCHHHHHHHHHHHHHHcCCCcccEEEeccCCCC---CCHHHHHHHHHHHHHcCccceeecCCCCHHHHHHHhhcCCceee
Q 018482 107 GTPEYVRACCEASLKRLDVEYIDLYYQHRVDTT---VPIEDTMGELKKLVDEGKIKYIGLSEASPDTIRRAHAVHPVTAL 183 (355)
Q Consensus 107 ~s~~~i~~~~~~sL~~L~~d~iDl~~lh~p~~~---~~~~~~~~~L~~l~~~Gkir~iGvS~~~~~~l~~~~~~~~~~~~ 183 (355)
++.+ -+-.+-+.|.++|+++|++-..-+|..- .+.+++++.+.. ...+++.++. .+...++.+++... +.+
T Consensus 65 ~s~e-~Ki~ia~~L~~~GV~~IEvGs~vspk~vPqmad~~ev~~~i~~---~~~~~~~~l~-~n~~die~A~~~g~-~~v 138 (347)
T PLN02746 65 VPTS-VKVELIQRLVSSGLPVVEATSFVSPKWVPQLADAKDVMAAVRN---LEGARFPVLT-PNLKGFEAAIAAGA-KEV 138 (347)
T ss_pred CCHH-HHHHHHHHHHHcCCCEEEECCCcCcccccccccHHHHHHHHHh---ccCCceeEEc-CCHHHHHHHHHcCc-CEE
Confidence 4444 4566777799999999998654454311 233455555543 2335555554 47788888877632 222
Q ss_pred cc---------ccccccchhh-----hchHHHHHHhCCcEEe
Q 018482 184 QM---------EWSLWTRAIE-----DEIVPLCRELGIGIVP 211 (355)
Q Consensus 184 q~---------~~n~~~~~~~-----~~~~~~~~~~gi~v~a 211 (355)
.+ .+|+-....+ .+.+++++++|+.+.+
T Consensus 139 ~i~~s~Sd~h~~~n~~~t~~e~l~~~~~~v~~Ak~~Gl~v~~ 180 (347)
T PLN02746 139 AVFASASESFSKSNINCSIEESLVRYREVALAAKKHSIPVRG 180 (347)
T ss_pred EEEEecCHHHHHHHhCCCHHHHHHHHHHHHHHHHHcCCeEEE
Confidence 22 2222111111 5788999999998853
No 130
>TIGR01927 menC_gamma/gm+ o-succinylbenzoic acid (OSB) synthetase. This model describes the enzyme o-succinylbenzoic acid synthetase (menC) that is involved in one of the steps of the menaquinone biosynthesis pathway. It takes SHCHC and makes it into 2-succinylbenzoate. Included in this model are gamma proteobacteria and archaea. Many of the com-names of the proteins identified by the model are identified as O-succinylbenzoyl-CoA synthase in error.
Probab=37.17 E-value=2.4e+02 Score=26.42 Aligned_cols=86 Identities=9% Similarity=-0.015 Sum_probs=56.2
Q ss_pred ccEEEeccCCCCCCHHHHHHHHHHHHHcCc-cceeecCCCCHHHHHHHhhcCCceeeccccccccch-hhhchHHHHHHh
Q 018482 128 IDLYYQHRVDTTVPIEDTMGELKKLVDEGK-IKYIGLSEASPDTIRRAHAVHPVTALQMEWSLWTRA-IEDEIVPLCREL 205 (355)
Q Consensus 128 iDl~~lh~p~~~~~~~~~~~~L~~l~~~Gk-ir~iGvS~~~~~~l~~~~~~~~~~~~q~~~n~~~~~-~~~~~~~~~~~~ 205 (355)
.++.+|..|-.. . +.+..|.+.-. =-..|=|.++...+..+++....+++|+...-.-.- .-.++.+.|+.+
T Consensus 183 ~~i~~iEqP~~~---~---~~~~~l~~~~~~Pia~dEs~~~~~d~~~~~~~~~~d~i~ik~~~~GGi~~~~~i~~~a~~~ 256 (307)
T TIGR01927 183 GRIAFLEEPLPD---A---DEMSAFSEATGTAIALDESLWELPQLADEYGPGWRGALVIKPAIIGSPAKLRDLAQKAHRL 256 (307)
T ss_pred CCceEEeCCCCC---H---HHHHHHHHhCCCCEEeCCCcCChHHHHHHHhcCCCceEEECchhcCCHHHHHHHHHHHHHc
Confidence 355666655321 1 45556655532 234566677888888888877778888876643211 127889999999
Q ss_pred CCcEEecccCCccc
Q 018482 206 GIGIVPYSPLGRGF 219 (355)
Q Consensus 206 gi~v~a~spl~~G~ 219 (355)
|+.++..+.+..|+
T Consensus 257 gi~~~~~~~~es~i 270 (307)
T TIGR01927 257 GLQAVFSSVFESSI 270 (307)
T ss_pred CCCEEEECccchHH
Confidence 99999887776543
No 131
>TIGR00216 ispH_lytB (E)-4-hydroxy-3-methyl-but-2-enyl pyrophosphate reductase (IPP and DMAPP forming). Escherichia coli LytB protein had been found to regulate the activity of RelA (guanosine 3',5'-bispyrophosphate synthetase I), which in turn controls the level of a regulatory metabolite. It is involved in penicillin tolerance and the stringent response.
Probab=36.87 E-value=2e+02 Score=26.71 Aligned_cols=117 Identities=17% Similarity=0.204 Sum_probs=68.8
Q ss_pred HHHHHHHHcCccceeecCCCCHHHHHHHhhc----CCceeecc--ccccccchhhhchHHHHHHhCCcEEecccCCcccC
Q 018482 147 GELKKLVDEGKIKYIGLSEASPDTIRRAHAV----HPVTALQM--EWSLWTRAIEDEIVPLCRELGIGIVPYSPLGRGFF 220 (355)
Q Consensus 147 ~~L~~l~~~Gkir~iGvS~~~~~~l~~~~~~----~~~~~~q~--~~n~~~~~~~~~~~~~~~~~gi~v~a~spl~~G~L 220 (355)
+.++.|....++-.+--++++.+.++++.+. .+..-..+ .....+..-+..+.+.+++-++-++.-+.-++
T Consensus 145 ~d~~~l~~~~~v~vvsQTT~~~~~~~~i~~~l~~~~~~~~~~~~nTIC~AT~~RQ~a~~~la~~vD~miVVGg~nSs--- 221 (280)
T TIGR00216 145 EDLENFKVEDLLGVVSQTTLSQEDTKEIVAELKARVPQKEVPVFNTICYATQNRQDAVKELAPEVDLMIVIGGKNSS--- 221 (280)
T ss_pred HHHHhCCCCCcEEEEEcCCCcHHHHHHHHHHHHHhCCCcCCCCCCCcccccHHHHHHHHHHHhhCCEEEEECCCCCc---
Confidence 3344444445566666666777766655443 21011111 11122222246788888887776665322211
Q ss_pred CCCCCCCCCCCccccccCCCCCCcchhhhHHHHHHHHHHHHHcCC------CHHHHHHHHHhhCCCCeeeecCCCCHHHH
Q 018482 221 GGKASVESLPASSILTWHPRFSGENIDKNKILYLRLQKLAEKHEC------NPAQLALAWILHQGDDVAPIPGTTKIKNL 294 (355)
Q Consensus 221 ~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~la~~~~~------s~~qlal~~~l~~~~v~~vIvG~~~~~~l 294 (355)
+ -.+|.++|++++. ++.++-..|.-.... ..+.-|+|+|+.+
T Consensus 222 --N-----------------------------T~rL~ei~~~~~~~t~~Ie~~~el~~~~l~~~~~-VGiTAGASTP~~l 269 (280)
T TIGR00216 222 --N-----------------------------TTRLYEIAEEHGPPSYLIETAEELPEEWLKGVKV-VGITAGASTPDWI 269 (280)
T ss_pred --h-----------------------------HHHHHHHHHHhCCCEEEECChHHCCHHHhCCCCE-EEEEecCCCCHHH
Confidence 0 1478899988874 789999999977654 5777999999977
Q ss_pred HHHH
Q 018482 295 DDNI 298 (355)
Q Consensus 295 ~~nl 298 (355)
-+.+
T Consensus 270 i~eV 273 (280)
T TIGR00216 270 IEEV 273 (280)
T ss_pred HHHH
Confidence 5543
No 132
>PRK12569 hypothetical protein; Provisional
Probab=36.24 E-value=1.5e+02 Score=26.99 Aligned_cols=84 Identities=19% Similarity=0.206 Sum_probs=53.4
Q ss_pred eeccccCCCCCCCCCCHHHHHHHHHHH-HHcCCCeEeCccCcCCCChhHHHHHHHHhcCCCCCEEEEeeccccccCC-CC
Q 018482 25 GFGCMGLTGMYNDPVPDEVGISIIKHA-FDQGITFFDTADVYGPNNANELLVGKALKQFPREKVQLATKFGVVKFDV-SG 102 (355)
Q Consensus 25 glGt~~~~~~~~~~~~~~~~~~~l~~A-~~~Gi~~~DtA~~Yg~~g~sE~~lg~~L~~~~R~~~~i~tK~~~~~~~~-~~ 102 (355)
+||.|++|. .-+++...+|..| +.+|+ +.|+ ...+-+.++-.+...+-|-.--++.+..+ ++
T Consensus 14 sfG~~~~g~-----~~D~~lmp~ItsaNIACG~-------HAGD----p~~M~~tv~lA~~~~V~IGAHPsyPD~~gFGR 77 (245)
T PRK12569 14 GFGPWRIGD-----GVDEALMPLISSANIATGF-------HAGD----PNIMRRTVELAKAHGVGIGAHPGFRDLVGFGR 77 (245)
T ss_pred CCCCcCCCC-----ccHHHHHHHhhhHHHhccc-------cCCC----HHHHHHHHHHHHHcCCEeccCCCCCcCCCCCC
Confidence 678887652 0167888888888 57887 6774 44556666544556676766655443222 22
Q ss_pred cccCCCHHHHHHHHHHHHHHcC
Q 018482 103 LVINGTPEYVRACCEASLKRLD 124 (355)
Q Consensus 103 ~~~~~s~~~i~~~~~~sL~~L~ 124 (355)
-..+.+++.++..+..++..|.
T Consensus 78 r~m~~s~~el~~~v~yQigaL~ 99 (245)
T PRK12569 78 RHINASPQELVNDVLYQLGALR 99 (245)
T ss_pred CCCCCCHHHHHHHHHHHHHHHH
Confidence 2345788888888877777764
No 133
>TIGR01060 eno phosphopyruvate hydratase. Alternate name: enolase
Probab=36.16 E-value=3.3e+02 Score=26.82 Aligned_cols=96 Identities=11% Similarity=0.087 Sum_probs=61.5
Q ss_pred CCHHHHHHHHHHHHHHcCCCcccEEEeccCCCCCCHHHHHHHHHHHHHcC--ccceeecCC--CCHHHHHHHhhcCCcee
Q 018482 107 GTPEYVRACCEASLKRLDVEYIDLYYQHRVDTTVPIEDTMGELKKLVDEG--KIKYIGLSE--ASPDTIRRAHAVHPVTA 182 (355)
Q Consensus 107 ~s~~~i~~~~~~sL~~L~~d~iDl~~lh~p~~~~~~~~~~~~L~~l~~~G--kir~iGvS~--~~~~~l~~~~~~~~~~~ 182 (355)
++++...+-+++.++. .++.+|..|-+. +-|+.+.+|.+.- .+.-.|=-. .+...++.+++....++
T Consensus 262 ~s~~eai~~~~~lle~-----~~i~~iEdPl~~----~D~~~~~~L~~~~~~~ipI~gDE~~~t~~~~~~~~i~~~a~d~ 332 (425)
T TIGR01060 262 LTSEEMIEYYKELVEK-----YPIVSIEDGLSE----EDWEGWAELTKELGDKVQIVGDDLFVTNTEILREGIEMGVANS 332 (425)
T ss_pred cCHHHHHHHHHHHHhc-----CCcEEEEcCCCc----ccHHHHHHHHHhcCCCCeEEeCCCcccCHHHHHHHHHhCCCCE
Confidence 3555555554444443 367778777543 2366666666653 454443332 25899999998888899
Q ss_pred eccccccccchh-hhchHHHHHHhCCcEEe
Q 018482 183 LQMEWSLWTRAI-EDEIVPLCRELGIGIVP 211 (355)
Q Consensus 183 ~q~~~n~~~~~~-~~~~~~~~~~~gi~v~a 211 (355)
+|+..+-.-.-. ..++...|+.+|+.++.
T Consensus 333 v~ik~~~iGGItea~~ia~lA~~~Gi~~vv 362 (425)
T TIGR01060 333 ILIKPNQIGTLTETLDAVELAKKAGYTAVI 362 (425)
T ss_pred EEecccccCCHHHHHHHHHHHHHcCCcEEE
Confidence 998877543211 26789999999999664
No 134
>TIGR03821 AblA_like_1 lysine-2,3-aminomutase-related protein. Members of this protein form a distinctive clade, homologous to lysine-2,3-aminomutase (of Bacillus, Clostridium, and methanogenic archaea) and likely similar in function. Members of this family are found in E. coli, Buchnera, Yersinia, etc.
Probab=35.64 E-value=3.9e+02 Score=25.25 Aligned_cols=75 Identities=19% Similarity=0.131 Sum_probs=44.6
Q ss_pred HHHHHHHHHHcCccceeecCC----CCHH----HHHHHhhcCCceee-cccccccc--chhhhchHHHHHHhCCcEEecc
Q 018482 145 TMGELKKLVDEGKIKYIGLSE----ASPD----TIRRAHAVHPVTAL-QMEWSLWT--RAIEDEIVPLCRELGIGIVPYS 213 (355)
Q Consensus 145 ~~~~L~~l~~~Gkir~iGvS~----~~~~----~l~~~~~~~~~~~~-q~~~n~~~--~~~~~~~~~~~~~~gi~v~a~s 213 (355)
..+.++.+..-..++.+|+.+ ..+. .+.+.++..++..+ ++.+|-.. .....+.++.+++.|+.+...+
T Consensus 161 L~~ll~~l~~i~~~~~iri~tr~~~~~p~rit~el~~~L~~~~~~~~~~~h~dh~~Ei~d~~~~ai~~L~~~Gi~v~~qt 240 (321)
T TIGR03821 161 LDWLLNLLEQIPHLKRLRIHTRLPVVIPDRITSGLCDLLANSRLQTVLVVHINHANEIDAEVADALAKLRNAGITLLNQS 240 (321)
T ss_pred HHHHHHHHHhCCCCcEEEEecCcceeeHHHhhHHHHHHHHhcCCcEEEEeeCCChHhCcHHHHHHHHHHHHcCCEEEecc
Confidence 456666666667777777753 3222 22223333444343 44555321 1112567888899999999999
Q ss_pred cCCccc
Q 018482 214 PLGRGF 219 (355)
Q Consensus 214 pl~~G~ 219 (355)
++..|+
T Consensus 241 vllkgi 246 (321)
T TIGR03821 241 VLLRGV 246 (321)
T ss_pred eeeCCC
Confidence 998765
No 135
>smart00642 Aamy Alpha-amylase domain.
Probab=35.15 E-value=65 Score=27.22 Aligned_cols=22 Identities=18% Similarity=0.288 Sum_probs=19.5
Q ss_pred hchHHHHHHhCCcEEecccCCc
Q 018482 196 DEIVPLCRELGIGIVPYSPLGR 217 (355)
Q Consensus 196 ~~~~~~~~~~gi~v~a~spl~~ 217 (355)
+.+++.|+++||.|+.--++.+
T Consensus 73 ~~lv~~~h~~Gi~vilD~V~NH 94 (166)
T smart00642 73 KELVDAAHARGIKVILDVVINH 94 (166)
T ss_pred HHHHHHHHHCCCEEEEEECCCC
Confidence 8899999999999998877764
No 136
>PRK12928 lipoyl synthase; Provisional
Probab=35.10 E-value=3.4e+02 Score=25.26 Aligned_cols=161 Identities=14% Similarity=0.191 Sum_probs=0.0
Q ss_pred CCHHHHHHHHHHHHHcCCCeEeCccCcC---CCChhHHHHHHHHhcCCCCCEEEEeeccccccCCCCcccCCCHHHHHHH
Q 018482 39 VPDEVGISIIKHAFDQGITFFDTADVYG---PNNANELLVGKALKQFPREKVQLATKFGVVKFDVSGLVINGTPEYVRAC 115 (355)
Q Consensus 39 ~~~~~~~~~l~~A~~~Gi~~~DtA~~Yg---~~g~sE~~lg~~L~~~~R~~~~i~tK~~~~~~~~~~~~~~~s~~~i~~~ 115 (355)
.+.++..+.++.+.+.|++++-...... . ...-..+.+.++..+...-.+..++ .+++.+..
T Consensus 87 ~~~eei~~~a~~~~~~G~keivitg~~~dDl~-d~g~~~~~ell~~Ik~~~p~~~I~~-------------ltp~~~~~- 151 (290)
T PRK12928 87 LDPDEPERVAEAVAALGLRYVVLTSVARDDLP-DGGAAHFVATIAAIRARNPGTGIEV-------------LTPDFWGG- 151 (290)
T ss_pred CCHHHHHHHHHHHHHCCCCEEEEEEEeCCccc-ccCHHHHHHHHHHHHhcCCCCEEEE-------------eccccccC-
Q ss_pred HHHHHHHcCCCcccEEEe---------ccCCCCCCHHHHHHHHHHHHHcC---cccee---ecCCCCHHHHHHHhhc---
Q 018482 116 CEASLKRLDVEYIDLYYQ---------HRVDTTVPIEDTMGELKKLVDEG---KIKYI---GLSEASPDTIRRAHAV--- 177 (355)
Q Consensus 116 ~~~sL~~L~~d~iDl~~l---------h~p~~~~~~~~~~~~L~~l~~~G---kir~i---GvS~~~~~~l~~~~~~--- 177 (355)
..+.|+.|.-...+++.. .........++.++.++.+++.| .++.- |+ .-+.+++.+.+..
T Consensus 152 ~~e~L~~l~~Ag~~i~~hnlEt~~~vl~~m~r~~t~e~~le~l~~ak~~gp~i~~~s~iIvG~-GET~ed~~etl~~Lre 230 (290)
T PRK12928 152 QRERLATVLAAKPDVFNHNLETVPRLQKAVRRGADYQRSLDLLARAKELAPDIPTKSGLMLGL-GETEDEVIETLRDLRA 230 (290)
T ss_pred CHHHHHHHHHcCchhhcccCcCcHHHHHHhCCCCCHHHHHHHHHHHHHhCCCceecccEEEeC-CCCHHHHHHHHHHHHh
Q ss_pred CCceeecc-cccc-----------ccchhhhchHHHHHHhCCcEEecccC
Q 018482 178 HPVTALQM-EWSL-----------WTRAIEDEIVPLCRELGIGIVPYSPL 215 (355)
Q Consensus 178 ~~~~~~q~-~~n~-----------~~~~~~~~~~~~~~~~gi~v~a~spl 215 (355)
.+++.+.+ +|.. .....-..+.+++.+.|...++..||
T Consensus 231 l~~d~v~i~~Yl~p~~~~~~v~~~~~~~~f~~~~~~~~~~g~~~~~~~p~ 280 (290)
T PRK12928 231 VGCDRLTIGQYLRPSLAHLPVQRYWTPEEFEALGQIARELGFSHVRSGPL 280 (290)
T ss_pred cCCCEEEEEcCCCCCccCCceeeccCHHHHHHHHHHHHHcCCceeEecCc
No 137
>cd04747 OYE_like_5_FMN Old yellow enzyme (OYE)-related FMN binding domain, group 5. Each monomer of OYE contains FMN as a non-covalently bound cofactor, uses NADPH as a reducing agent with oxygens, quinones, and alpha,beta-unsaturated aldehydes and ketones, and can act as electron acceptors in the catalytic reaction. Other members of OYE family include trimethylamine dehydrogenase, 2,4-dienoyl-CoA reductase, enoate reductase, pentaerythriol tetranitrate reductase, xenobiotic reductase, and morphinone reductase.
Probab=35.02 E-value=4.2e+02 Score=25.52 Aligned_cols=142 Identities=13% Similarity=0.067 Sum_probs=69.4
Q ss_pred CCCHHHHHHHHH-------HHHHcCCCeEeCc-------------------cCcCCCChhH---HHHHHHHhc---CCCC
Q 018482 38 PVPDEVGISIIK-------HAFDQGITFFDTA-------------------DVYGPNNANE---LLVGKALKQ---FPRE 85 (355)
Q Consensus 38 ~~~~~~~~~~l~-------~A~~~Gi~~~DtA-------------------~~Yg~~g~sE---~~lg~~L~~---~~R~ 85 (355)
.++.+|..++++ .|.++|+..|+.- +.|| |.-| +++-+.++. .-.+
T Consensus 133 ~mt~~eI~~ii~~f~~AA~~a~~aGfDgVeih~ahGyLl~qFLSp~~N~RtDeYG--GslenR~Rf~~eii~air~~vG~ 210 (361)
T cd04747 133 EMTEADIDDVIAAFARAAADARRLGFDGIELHGAHGYLIDQFFWAGTNRRADGYG--GSLAARSRFAAEVVKAIRAAVGP 210 (361)
T ss_pred cCCHHHHHHHHHHHHHHHHHHHHcCCCEEEEecccchHHHHhcCCCCCCCCCCCC--CCHHHHHHHHHHHHHHHHHHcCC
Confidence 357777666554 4467999988743 2345 4344 222333332 1235
Q ss_pred CEEEEeeccccccCCCCcccCCCHHHHHHHHHHHHHHcCCCcccEEEe--ccCCCCCCHHHHHHHHHHHHHcCccceeec
Q 018482 86 KVQLATKFGVVKFDVSGLVINGTPEYVRACCEASLKRLDVEYIDLYYQ--HRVDTTVPIEDTMGELKKLVDEGKIKYIGL 163 (355)
Q Consensus 86 ~~~i~tK~~~~~~~~~~~~~~~s~~~i~~~~~~sL~~L~~d~iDl~~l--h~p~~~~~~~~~~~~L~~l~~~Gkir~iGv 163 (355)
++.|..|+..+....-......+++...+ +-+.|+..|+|++++-.- +.|.. .. .-+.....+++.-++.-+++
T Consensus 211 d~~v~vRis~~~~~~~~~~~g~~~~e~~~-~~~~l~~~gvd~i~vs~g~~~~~~~-~~--~~~~~~~~~k~~~~~pv~~~ 286 (361)
T cd04747 211 DFPIILRFSQWKQQDYTARLADTPDELEA-LLAPLVDAGVDIFHCSTRRFWEPEF-EG--SELNLAGWTKKLTGLPTITV 286 (361)
T ss_pred CCeEEEEECcccccccccCCCCCHHHHHH-HHHHHHHcCCCEEEecCCCccCCCc-Cc--cchhHHHHHHHHcCCCEEEE
Confidence 67777888743211000000134554433 333467778777665321 11111 10 01222233444334444554
Q ss_pred CC-------------------CCHHHHHHHhhcCCceeecc
Q 018482 164 SE-------------------ASPDTIRRAHAVHPVTALQM 185 (355)
Q Consensus 164 S~-------------------~~~~~l~~~~~~~~~~~~q~ 185 (355)
.. .+++..+++++....|.+.+
T Consensus 287 G~i~~~~~~~~~~~~~~~~~~~~~~~a~~~l~~g~~D~V~~ 327 (361)
T cd04747 287 GSVGLDGDFIGAFAGDEGASPASLDRLLERLERGEFDLVAV 327 (361)
T ss_pred CCcccccccccccccccccccCCHHHHHHHHHCCCCCeehh
Confidence 44 36777878777766666555
No 138
>PF01964 ThiC: ThiC family; InterPro: IPR002817 ThiC is found within the thiamin biosynthesis operon. ThiC is involved in thiamin biosynthesis []. The precise catalytic function of ThiC is still not known. ThiC participates in the formation of 4-Amino-5-hydroxymethyl-2-methylpyrimidine from AIR, an intermediate in the de novo pyrimidine biosynthesis.; GO: 0009228 thiamine biosynthetic process; PDB: 3EPO_A 3EPN_B 3EPM_B.
Probab=34.85 E-value=1.6e+02 Score=28.79 Aligned_cols=149 Identities=15% Similarity=0.111 Sum_probs=73.6
Q ss_pred CHHHHHHHHHHHHHcCCCeE-eCccCcCCCChhHHHHHHHHhcCCCCCEEEEeecccccc-CCCCcccCCCHHHHHHHHH
Q 018482 40 PDEVGISIIKHAFDQGITFF-DTADVYGPNNANELLVGKALKQFPREKVQLATKFGVVKF-DVSGLVINGTPEYVRACCE 117 (355)
Q Consensus 40 ~~~~~~~~l~~A~~~Gi~~~-DtA~~Yg~~g~sE~~lg~~L~~~~R~~~~i~tK~~~~~~-~~~~~~~~~s~~~i~~~~~ 117 (355)
+.++-.+-++.|.+.|-..+ |-+ ..| ....+--..|+. ..+-|.|=-=+... ...+...+.+.+.+.+.++
T Consensus 74 d~~~E~~K~~~A~~~GADtvMDLS-tgg---dl~~iR~~il~~---~~vpvGTVPiYqa~~~~~~~~~~~t~d~~~~~ie 146 (420)
T PF01964_consen 74 DIEEELEKLKIAEKAGADTVMDLS-TGG---DLDEIRRAILEN---SPVPVGTVPIYQAAIRKGGSIVDMTEDDFFDVIE 146 (420)
T ss_dssp -HHHHHHHHHHHHHTT-SEEEE----ST---THHHHHHHHHHT----SS-EEE-HHHHHHHHTTT-GGG--HHHHHHHHH
T ss_pred CHHHHHHHHHHHHHhCCCEEEEcC-CCC---CHHHHHHHHHHh---CCCccccchHHHHHHHhCCChhhCCHHHHHHHHH
Confidence 55555677799999998754 554 233 255555555553 34445442111000 0112234678888988888
Q ss_pred HHHHHcCCCcccEEEeccCCCCCCHHHHHHHHHHHHHcCccceeecCCCCHHHHHHHhhcCCceeeccccccccchhhhc
Q 018482 118 ASLKRLDVEYIDLYYQHRVDTTVPIEDTMGELKKLVDEGKIKYIGLSEASPDTIRRAHAVHPVTALQMEWSLWTRAIEDE 197 (355)
Q Consensus 118 ~sL~~L~~d~iDl~~lh~p~~~~~~~~~~~~L~~l~~~Gkir~iGvS~~~~~~l~~~~~~~~~~~~q~~~n~~~~~~~~~ 197 (355)
+..+ +=+|.+.||.-- +.+.++.++++|+ ..|+-+-....+..++... -.-|++.... .+
T Consensus 147 ~qa~----~GVDfmtiH~gi-------t~~~~~~~~~~~R--~~giVSRGGs~l~~WM~~n------~~ENPly~~f-D~ 206 (420)
T PF01964_consen 147 KQAK----DGVDFMTIHCGI-------TRETLERLKKSGR--IMGIVSRGGSILAAWMLHN------GKENPLYEHF-DR 206 (420)
T ss_dssp HHHH----HT--EEEE-TT---------GGGGGGGT--TS--SS----HHHHHHHHHHHHH------TS--HHHHTH-HH
T ss_pred HHHH----cCCCEEEEccch-------hHHHHHHHhhhcc--ccCccccchHHHHHHHHhc------CCcCcHHHhH-HH
Confidence 8876 357899999842 2455667777877 5566554555555443321 1345555544 67
Q ss_pred hHHHHHHhCCcEEecccC
Q 018482 198 IVPLCRELGIGIVPYSPL 215 (355)
Q Consensus 198 ~~~~~~~~gi~v~a~spl 215 (355)
+++.|+++++.+..-.-|
T Consensus 207 lLeI~k~yDVtLSLGDgl 224 (420)
T PF01964_consen 207 LLEIAKEYDVTLSLGDGL 224 (420)
T ss_dssp HHHHHTTTT-EEEE--TT
T ss_pred HHHHHHHhCeeEeccccc
Confidence 999999999998554333
No 139
>PTZ00081 enolase; Provisional
Probab=33.99 E-value=3.9e+02 Score=26.60 Aligned_cols=97 Identities=18% Similarity=0.124 Sum_probs=66.8
Q ss_pred CCHHHHHHHHHHHHHHcCCCcccEEEeccCCCCCCHHHHHHHHHHHHHcC--ccceeec--CCCCHHHHHHHhhcCCcee
Q 018482 107 GTPEYVRACCEASLKRLDVEYIDLYYQHRVDTTVPIEDTMGELKKLVDEG--KIKYIGL--SEASPDTIRRAHAVHPVTA 182 (355)
Q Consensus 107 ~s~~~i~~~~~~sL~~L~~d~iDl~~lh~p~~~~~~~~~~~~L~~l~~~G--kir~iGv--S~~~~~~l~~~~~~~~~~~ 182 (355)
.+++.+.+-+.+.++.+ ++++|..|-.. +-|+.+.+|.+.- ++.-+|= +..+...+++.++....++
T Consensus 281 ~s~~eli~~~~~~l~~y-----~I~~IEDPl~~----~D~eg~~~Lt~~lg~~i~IvgDE~~~tn~~~l~~~I~~~aad~ 351 (439)
T PTZ00081 281 LTGEELVELYLDLVKKY-----PIVSIEDPFDQ----DDWEAYAKLTAAIGQKVQIVGDDLLVTNPTRIKKAIEKKACNA 351 (439)
T ss_pred cCHHHHHHHHHHHHhcC-----CcEEEEcCCCc----ccHHHHHHHHHhhCCCceEEcCCcccCCHHHHHHHHHhCCCCE
Confidence 56777777676777665 46777777443 3366666666642 5544443 2356899999999888899
Q ss_pred eccccccccch-hhhchHHHHHHhCCcEEec
Q 018482 183 LQMEWSLWTRA-IEDEIVPLCRELGIGIVPY 212 (355)
Q Consensus 183 ~q~~~n~~~~~-~~~~~~~~~~~~gi~v~a~ 212 (355)
+|+..|-.-.- ...++...|+++|+.++..
T Consensus 352 i~iKvnqiGGITe~l~~a~lA~~~Gi~~iis 382 (439)
T PTZ00081 352 LLLKVNQIGTVTEAIEAAKLAQKNGWGVMVS 382 (439)
T ss_pred EEeccccccCHHHHHHHHHHHHHcCCcEEEe
Confidence 99988754321 1267899999999998874
No 140
>PRK06294 coproporphyrinogen III oxidase; Provisional
Probab=33.94 E-value=2.7e+02 Score=26.85 Aligned_cols=60 Identities=15% Similarity=0.118 Sum_probs=36.1
Q ss_pred CCHHHHHHHHHHHHHHcCCCcccEEEecc-CCCC-----------CCH-H---HHH-HHHHHHHHcCccceeecCCCCH
Q 018482 107 GTPEYVRACCEASLKRLDVEYIDLYYQHR-VDTT-----------VPI-E---DTM-GELKKLVDEGKIKYIGLSEASP 168 (355)
Q Consensus 107 ~s~~~i~~~~~~sL~~L~~d~iDl~~lh~-p~~~-----------~~~-~---~~~-~~L~~l~~~Gkir~iGvS~~~~ 168 (355)
-+.+.+++.++..++ |+.+++.++.+.- |... .+- + +.+ .+.+.|.+.|- .++++|||..
T Consensus 167 qt~~~~~~~l~~~~~-l~~~~is~y~l~~~~gT~l~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~~Gy-~~yeis~fa~ 243 (370)
T PRK06294 167 QSLSDFIVDLHQAIT-LPITHISLYNLTIDPHTSFYKHRKRLLPSIADEEILAEMSLAAEELLTSQGF-TRYELASYAK 243 (370)
T ss_pred CCHHHHHHHHHHHHc-cCCCeEEEeeeEecCCChHHHHHhcCCCCCcCHHHHHHHHHHHHHHHHHcCC-CeeeeeeeeC
Confidence 467778888777664 7889998887763 2110 011 1 222 34455666776 4567888754
No 141
>PHA02128 hypothetical protein
Probab=33.66 E-value=1e+02 Score=24.05 Aligned_cols=69 Identities=17% Similarity=0.244 Sum_probs=48.1
Q ss_pred HHHHHHHHHHHcCccceeecCCCCHHHHHHHhhc------------------CCceeecc---ccccccchhhhchHHHH
Q 018482 144 DTMGELKKLVDEGKIKYIGLSEASPDTIRRAHAV------------------HPVTALQM---EWSLWTRAIEDEIVPLC 202 (355)
Q Consensus 144 ~~~~~L~~l~~~Gkir~iGvS~~~~~~l~~~~~~------------------~~~~~~q~---~~n~~~~~~~~~~~~~~ 202 (355)
..+.--.++..+|-+|-|-+...+-.+++..... ..+.++++ +|.+-.+....++++|+
T Consensus 61 gl~~lane~~aqgg~r~itmn~ankrhv~dmv~~~wrgdi~ist~selt~~cp~vkflmideseytltsrh~rqeiydwa 140 (151)
T PHA02128 61 GLLHLANEVSAQGGARIITMNSANKRHVQDMVSYQWRGDIRISTISELTDRCPKVKFLMIDESEYTLTSRHQRQEIYDWA 140 (151)
T ss_pred hHHHHHHHHHhcCCeEEEEeccchhhHHHHHhcccccCceEEeeHHHHhccCCeeEEEEEcchhceecchhhHHHHHhhc
Confidence 4566677888899999998877665555543221 23344444 67777776668999999
Q ss_pred HHhCCcEEec
Q 018482 203 RELGIGIVPY 212 (355)
Q Consensus 203 ~~~gi~v~a~ 212 (355)
-.||+.++.+
T Consensus 141 gthgvefvim 150 (151)
T PHA02128 141 GTHGVEFVIM 150 (151)
T ss_pred ccCceEEEEe
Confidence 9999987754
No 142
>PF11242 DUF2774: Protein of unknown function (DUF2774); InterPro: IPR021404 This entry is represented by Bacteriophage T4, Gp24.3; it is a family of uncharacterised viral proteins.
Probab=33.64 E-value=55 Score=22.82 Aligned_cols=22 Identities=23% Similarity=0.329 Sum_probs=19.3
Q ss_pred HHHHHHHcCCCHHHHHHHHHhh
Q 018482 256 LQKLAEKHECNPAQLALAWILH 277 (355)
Q Consensus 256 l~~la~~~~~s~~qlal~~~l~ 277 (355)
..+||+++|+++.+++..|+.-
T Consensus 16 FveIAr~~~i~a~e~a~~w~~V 37 (63)
T PF11242_consen 16 FVEIARKIGITAKEVAKAWAEV 37 (63)
T ss_pred HHHHHHHhCCCHHHHHHHHHHH
Confidence 4589999999999999999853
No 143
>TIGR01496 DHPS dihydropteroate synthase. This model represents dihydropteroate synthase, the enzyme that catalyzes the second to last step in folic acid biosynthesis. The gene is usually designated folP (folic acid biosynthsis) or sul (sulfanilamide resistance). This model represents one branch of the family of pterin-binding enzymes (pfam00809) and of a cluster of dihydropteroate synthase and related enzymes (COG0294). Other members of pfam00809 and COG0294 are represented by TIGR00284.
Probab=33.44 E-value=3.7e+02 Score=24.44 Aligned_cols=99 Identities=17% Similarity=0.143 Sum_probs=63.4
Q ss_pred CCHHHHHHHHHHHHHHcCCCcccEEE-eccCCCC-CCHHH----HHHHHHHHHHc-CccceeecCCCCHHHHHHHhhcCC
Q 018482 107 GTPEYVRACCEASLKRLDVEYIDLYY-QHRVDTT-VPIED----TMGELKKLVDE-GKIKYIGLSEASPDTIRRAHAVHP 179 (355)
Q Consensus 107 ~s~~~i~~~~~~sL~~L~~d~iDl~~-lh~p~~~-~~~~~----~~~~L~~l~~~-Gkir~iGvS~~~~~~l~~~~~~~~ 179 (355)
.+++.+.+.+++.+ .-|.++||+-- --+|+.. .+.++ +...++.+++. +. -+.+-+++++.++.+++...
T Consensus 20 ~~~~~~~~~a~~~~-~~GA~iIDIG~~st~p~~~~i~~~~E~~rl~~~v~~~~~~~~~--plsiDT~~~~vi~~al~~G~ 96 (257)
T TIGR01496 20 LSVDKAVAHAERML-EEGADIIDVGGESTRPGADRVSPEEELNRVVPVIKALRDQPDV--PISVDTYRAEVARAALEAGA 96 (257)
T ss_pred CCHHHHHHHHHHHH-HCCCCEEEECCCCCCCCCCCCCHHHHHHHHHHHHHHHHhcCCC--eEEEeCCCHHHHHHHHHcCC
Confidence 46677777766665 56889999932 2234332 23332 44555555554 43 48888999999999998754
Q ss_pred ceeeccccccccchhhhchHHHHHHhCCcEEecc
Q 018482 180 VTALQMEWSLWTRAIEDEIVPLCRELGIGIVPYS 213 (355)
Q Consensus 180 ~~~~q~~~n~~~~~~~~~~~~~~~~~gi~v~a~s 213 (355)
..++-+.. .. ..++++.++++|..++...
T Consensus 97 ~iINsis~--~~---~~~~~~l~~~~~~~vV~m~ 125 (257)
T TIGR01496 97 DIINDVSG--GQ---DPAMLEVAAEYGVPLVLMH 125 (257)
T ss_pred CEEEECCC--CC---CchhHHHHHHcCCcEEEEe
Confidence 33333322 21 2568899999999999843
No 144
>PRK12360 4-hydroxy-3-methylbut-2-enyl diphosphate reductase; Provisional
Probab=33.24 E-value=2.7e+02 Score=25.84 Aligned_cols=108 Identities=15% Similarity=0.122 Sum_probs=64.3
Q ss_pred CccceeecCCCCHHHHHHHhhc--CCceeecc--ccccccchhhhchHHHHHHhCCcEEecccCCcccCCCCCCCCCCCC
Q 018482 156 GKIKYIGLSEASPDTIRRAHAV--HPVTALQM--EWSLWTRAIEDEIVPLCRELGIGIVPYSPLGRGFFGGKASVESLPA 231 (355)
Q Consensus 156 Gkir~iGvS~~~~~~l~~~~~~--~~~~~~q~--~~n~~~~~~~~~~~~~~~~~gi~v~a~spl~~G~L~g~~~~~~~~~ 231 (355)
.++-.+--++++.+.+.++.+. .++.-+.+ .....+..-+....+.+++.++-++.-+.-+. +
T Consensus 157 ~kv~~vsQTT~~~~~~~~iv~~l~~~~~~~~v~~TIC~aT~~RQ~a~~~La~~vD~miVVGg~~Ss-----N-------- 223 (281)
T PRK12360 157 DKACVVAQTTIIPELWEDILNVIKLKSKELVFFNTICSATKKRQESAKELSKEVDVMIVIGGKHSS-----N-------- 223 (281)
T ss_pred cCEEEEECCCCcHHHHHHHHHHHHHhCcccccCCCcchhhhhHHHHHHHHHHhCCEEEEecCCCCc-----c--------
Confidence 4555555566777766655443 11111111 11111222246678888888877765322211 0
Q ss_pred ccccccCCCCCCcchhhhHHHHHHHHHHHHHcCC------CHHHHHHHHHhhCCCCeeeecCCCCHHHHHHHH
Q 018482 232 SSILTWHPRFSGENIDKNKILYLRLQKLAEKHEC------NPAQLALAWILHQGDDVAPIPGTTKIKNLDDNI 298 (355)
Q Consensus 232 ~~~~~~~~~~~~~~~~~~~~~~~~l~~la~~~~~------s~~qlal~~~l~~~~v~~vIvG~~~~~~l~~nl 298 (355)
-.+|.++|++.+. ++.++-..|+..... ..+.-|+|+|+.+-+.+
T Consensus 224 ---------------------T~rL~eia~~~~~~t~~Ie~~~el~~~~~~~~~~-VGitaGASTP~~li~eV 274 (281)
T PRK12360 224 ---------------------TQKLVKICEKNCPNTFHIETADELDLEMLKDYKI-IGITAGASTPDWIIEEV 274 (281)
T ss_pred ---------------------HHHHHHHHHHHCCCEEEECChHHCCHHHhCCCCE-EEEEccCCCCHHHHHHH
Confidence 0478888988764 789999999987654 56778999999765543
No 145
>PRK15440 L-rhamnonate dehydratase; Provisional
Probab=33.24 E-value=1.5e+02 Score=28.92 Aligned_cols=68 Identities=16% Similarity=0.107 Sum_probs=49.6
Q ss_pred HHHHHHHHHHcCcc--c-eeecCCCCHHHHHHHhhcCCceeeccccccccchh-hhchHHHHHHhCCcEEec
Q 018482 145 TMGELKKLVDEGKI--K-YIGLSEASPDTIRRAHAVHPVTALQMEWSLWTRAI-EDEIVPLCRELGIGIVPY 212 (355)
Q Consensus 145 ~~~~L~~l~~~Gki--r-~iGvS~~~~~~l~~~~~~~~~~~~q~~~n~~~~~~-~~~~~~~~~~~gi~v~a~ 212 (355)
-++.+.+|++.-.+ . .-|-+.++...++.+++...++++|+...-.-.-. -..+...|+.+|+.++..
T Consensus 247 d~~~~~~L~~~~~~~i~ia~gE~~~~~~~~~~li~~~a~Divq~d~~~~GGit~~~kia~lA~a~gi~~~pH 318 (394)
T PRK15440 247 DYWGYRELKRNAPAGMMVTSGEHEATLQGFRTLLEMGCIDIIQPDVGWCGGLTELVKIAALAKARGQLVVPH 318 (394)
T ss_pred cHHHHHHHHHhCCCCCceecCCCccCHHHHHHHHHcCCCCEEeCCccccCCHHHHHHHHHHHHHcCCeeccc
Confidence 36777788776442 2 23778888999999999888999999766432111 268899999999998654
No 146
>cd03313 enolase Enolase: Enolases are homodimeric enzymes that catalyse the reversible dehydration of 2-phospho-D-glycerate to phosphoenolpyruvate as part of the glycolytic and gluconeogenesis pathways. The reaction is facilitated by the presence of metal ions.
Probab=32.94 E-value=4.4e+02 Score=25.83 Aligned_cols=96 Identities=17% Similarity=0.162 Sum_probs=63.3
Q ss_pred CCHHHHHHHHHHHHHHcCCCcccEEEeccCCCCCCHHHHHHHHHHHHHcC--ccceeecC--CCCHHHHHHHhhcCCcee
Q 018482 107 GTPEYVRACCEASLKRLDVEYIDLYYQHRVDTTVPIEDTMGELKKLVDEG--KIKYIGLS--EASPDTIRRAHAVHPVTA 182 (355)
Q Consensus 107 ~s~~~i~~~~~~sL~~L~~d~iDl~~lh~p~~~~~~~~~~~~L~~l~~~G--kir~iGvS--~~~~~~l~~~~~~~~~~~ 182 (355)
++++...+-+.+.++.+ ++.+|..|-...+ |+.+.+|.+.- .+.-.|=- .+++..+.++++....++
T Consensus 261 ~t~~eai~~~~~l~e~~-----~i~~iEdPl~~~D----~eg~~~L~~~~g~~ipi~gdE~~~~~~~~~~~~i~~~a~d~ 331 (408)
T cd03313 261 LTSEELIDYYKELVKKY-----PIVSIEDPFDEDD----WEGWAKLTAKLGDKIQIVGDDLFVTNPERLKKGIEKKAANA 331 (408)
T ss_pred cCHHHHHHHHHHHHHhC-----CcEEEEeCCCCcC----HHHHHHHHHhcCCCCeEEcCCcccCCHHHHHHHHHhCCCCE
Confidence 55666655555555543 5778888855433 56666666652 44333322 247899999998888899
Q ss_pred eccccccccchh-hhchHHHHHHhCCcEEe
Q 018482 183 LQMEWSLWTRAI-EDEIVPLCRELGIGIVP 211 (355)
Q Consensus 183 ~q~~~n~~~~~~-~~~~~~~~~~~gi~v~a 211 (355)
+|+..+-.-.-. ..++...|+++|+.++.
T Consensus 332 v~ik~~~iGGite~~~ia~lA~~~G~~~~~ 361 (408)
T cd03313 332 LLIKVNQIGTLTETIEAIKLAKKNGYGVVV 361 (408)
T ss_pred EEEcccccCCHHHHHHHHHHHHHcCCeEEc
Confidence 998777543211 26788999999999875
No 147
>PRK14457 ribosomal RNA large subunit methyltransferase N; Provisional
Probab=32.77 E-value=4.3e+02 Score=25.27 Aligned_cols=108 Identities=13% Similarity=0.219 Sum_probs=65.3
Q ss_pred HHHHHHHHHHHHcC-CCcccEEEeccCCCC-----------CCHHHHHHHHHH-HHHcCc---cceeecC--CCCHHHHH
Q 018482 111 YVRACCEASLKRLD-VEYIDLYYQHRVDTT-----------VPIEDTMGELKK-LVDEGK---IKYIGLS--EASPDTIR 172 (355)
Q Consensus 111 ~i~~~~~~sL~~L~-~d~iDl~~lh~p~~~-----------~~~~~~~~~L~~-l~~~Gk---ir~iGvS--~~~~~~l~ 172 (355)
.+++-.+.-+++|+ .+....+-||.++++ .+++++++++.+ +.+.|+ ++++=+. |.+.+.++
T Consensus 195 ~i~~L~~~~~~~~~~~~~~laiSLha~~~e~r~~i~p~~~~~~l~~l~~~~~~y~~~~gr~I~iey~LIpGvNDs~e~a~ 274 (345)
T PRK14457 195 TIPQLAELAFQRLGRLQFTLAVSLHAPNQKLRETLIPSAKNYPIENLLEDCRHYVAITGRRVSFEYILLGGVNDLPEHAE 274 (345)
T ss_pred hHHHHHhhhhhhcccCceEEEEEeCCCCHHHHHHhcCCccCCCHHHHHHHHHHHHHHhCCEEEEEEEEECCcCCCHHHHH
Confidence 34444444445554 344578999999653 236778878766 455564 5666443 33555544
Q ss_pred HH---hhcCCceeeccccccccch----hh----hchHHHHHHhCCcEEecccCCcc
Q 018482 173 RA---HAVHPVTALQMEWSLWTRA----IE----DEIVPLCRELGIGIVPYSPLGRG 218 (355)
Q Consensus 173 ~~---~~~~~~~~~q~~~n~~~~~----~~----~~~~~~~~~~gi~v~a~spl~~G 218 (355)
++ ++..+..++-++||.+... +. ....+..+++|+.+......+..
T Consensus 275 ~La~~l~~l~~~VnLIPynp~~~~~~~~ps~e~i~~f~~~L~~~Gi~vtvR~~~G~d 331 (345)
T PRK14457 275 ELANLLRGFQSHVNLIPYNPIDEVEFQRPSPKRIQAFQRVLEQRGVAVSVRASRGLD 331 (345)
T ss_pred HHHHHHhcCCCeEEEecCCCCCCCCCCCCCHHHHHHHHHHHHHCCCeEEEeCCCCCc
Confidence 44 4434557777899876431 11 44566677889999887766543
No 148
>PRK05283 deoxyribose-phosphate aldolase; Provisional
Probab=31.74 E-value=3.4e+02 Score=24.89 Aligned_cols=81 Identities=19% Similarity=0.061 Sum_probs=52.3
Q ss_pred CHH-HHHHHHHHHHHcCCCeEeCccCcCCCChhHHHHHHHHhcCCCC--CEEEEeeccccccCCCCcccCCCHHHHHHHH
Q 018482 40 PDE-VGISIIKHAFDQGITFFDTADVYGPNNANELLVGKALKQFPRE--KVQLATKFGVVKFDVSGLVINGTPEYVRACC 116 (355)
Q Consensus 40 ~~~-~~~~~l~~A~~~Gi~~~DtA~~Yg~~g~sE~~lg~~L~~~~R~--~~~i~tK~~~~~~~~~~~~~~~s~~~i~~~~ 116 (355)
+.+ +..++.+.|+++|..|+=|+.-|+.+|.+.+.+--..+..++. .--+.-|..... .+.+...+-+
T Consensus 144 ~~ee~i~~a~~~a~~aGADFVKTSTGf~~~gAt~edv~lm~~~i~~~~~~~~vgIKAsGGI---------rt~~~A~~~i 214 (257)
T PRK05283 144 KDEALIRKASEIAIKAGADFIKTSTGKVPVNATLEAARIMLEVIRDMGVAKTVGFKPAGGV---------RTAEDAAQYL 214 (257)
T ss_pred CCHHHHHHHHHHHHHhCCCEEEcCCCCCCCCCCHHHHHHHHHHHHhcccCCCeeEEccCCC---------CCHHHHHHHH
Confidence 445 5888999999999999999999975454444333222222110 011444442111 3678888889
Q ss_pred HHHHHHcCCCccc
Q 018482 117 EASLKRLDVEYID 129 (355)
Q Consensus 117 ~~sL~~L~~d~iD 129 (355)
+.--+.||.++++
T Consensus 215 ~ag~~~lg~~~~~ 227 (257)
T PRK05283 215 ALADEILGADWAD 227 (257)
T ss_pred HHHHHHhChhhcC
Confidence 9999999988765
No 149
>PRK08776 cystathionine gamma-synthase; Provisional
Probab=31.45 E-value=4.4e+02 Score=25.68 Aligned_cols=86 Identities=12% Similarity=0.093 Sum_probs=53.3
Q ss_pred cEEEeccCCCCCCHHHHHHHHHHHHHcCccceeecCCCCHHHHHHHhhc-CCceeeccccccccchhh-hchHHHHHHhC
Q 018482 129 DLYYQHRVDTTVPIEDTMGELKKLVDEGKIKYIGLSEASPDTIRRAHAV-HPVTALQMEWSLWTRAIE-DEIVPLCRELG 206 (355)
Q Consensus 129 Dl~~lh~p~~~~~~~~~~~~L~~l~~~Gkir~iGvS~~~~~~l~~~~~~-~~~~~~q~~~n~~~~~~~-~~~~~~~~~~g 206 (355)
|-+++..|. ...++..++.+.+.+.++.+-+...+.+.++++++. .+..++..+-|+.-+-.+ .++.++|+++|
T Consensus 100 D~Vvv~~p~----Y~~t~~~~~~~~~~~g~~v~~v~~~d~~~l~~~i~~~tklV~l~~P~NPtG~v~dl~~I~~la~~~g 175 (405)
T PRK08776 100 DTLVVPHDA----YGGSWRLFNALAKKGHFALITADLTDPRSLADALAQSPKLVLIETPSNPLLRITDLRFVIEAAHKVG 175 (405)
T ss_pred CEEEEccCC----chHHHHHHHHHHHhcCcEEEEECCCCHHHHHHhcCcCCeEEEEECCCCCCCccCCHHHHHHHHHHcC
Confidence 555554432 244455555555555566666655577888877643 344555556666443222 78899999999
Q ss_pred CcEEecccCCcc
Q 018482 207 IGIVPYSPLGRG 218 (355)
Q Consensus 207 i~v~a~spl~~G 218 (355)
+.++.-..++.+
T Consensus 176 i~vIvD~a~a~~ 187 (405)
T PRK08776 176 ALTVVDNTFLSP 187 (405)
T ss_pred CEEEEECCCccc
Confidence 999987776654
No 150
>cd01973 Nitrogenase_VFe_beta_like Nitrogenase_VFe_beta -like: Nitrogenase VFe protein, beta subunit like. This group contains proteins similar to the beta subunits of the VFe protein of the vanadium-dependent (V-) nitrogenase. Nitrogenase catalyzes the ATP-dependent reduction of dinitrogen (N2) to ammonia. In addition to V-nitrogenase there is a molybdenum (Mo)-dependent nitrogenase and an iron only (Fe-) nitrogenase. The Mo-nitrogenase is the most widespread and best characterized of these systems. These systems consist of component 1 (VFe protein, FeFe protein or, MoFe protein respectively) and, component 2 (Fe protein). MoFe is an alpha2beta2 tetramer, V-and Fe- nitrogenases are alpha2beta2delta2 hexamers. The alpha and beta subunits of VFe and FeFe are similar to the alpha and beta subunits of MoFe. For MoFe each alphabeta pair contains one P-cluster (at the alphabeta interface) and, one molecule of iron molybdenum cofactor (FeMoco) contained within the alpha subunit. The Fe p
Probab=31.38 E-value=5.4e+02 Score=25.63 Aligned_cols=109 Identities=12% Similarity=0.134 Sum_probs=57.7
Q ss_pred cCcCCCChhHHHHHHHHhc----CC-CCCEEEEeeccccccCCCCcccCCCHHHHHHHHHHHHHHcCC----CcccEEEe
Q 018482 63 DVYGPNNANELLVGKALKQ----FP-REKVQLATKFGVVKFDVSGLVINGTPEYVRACCEASLKRLDV----EYIDLYYQ 133 (355)
Q Consensus 63 ~~Yg~~g~sE~~lg~~L~~----~~-R~~~~i~tK~~~~~~~~~~~~~~~s~~~i~~~~~~sL~~L~~----d~iDl~~l 133 (355)
-.|| .|+-|-++|++ .+ .+-++|.|-+..... -+++..-+++.-+.++- -.+.++.+
T Consensus 66 ~VfG----G~~~L~~~I~~~~~~~~~p~~I~V~tTC~~eiI----------GDDi~~vv~~~~~~~~~e~~~~~~~vi~v 131 (454)
T cd01973 66 AVFG----GAKRVEEGVLVLARRYPDLRVIPIITTCSTEII----------GDDIEGVIRKLNEALKEEFPDREVHLIPV 131 (454)
T ss_pred eEEC----cHHHHHHHHHHHHHhcCCCCEEEEECCchHhhh----------ccCHHHHHHHHHhhhhhccCCCCCeEEEe
Confidence 4677 45566666655 32 234677777643321 12233333332222211 14689999
Q ss_pred ccCCCCCCH----HHHHHHHHH-HHH----cCccceeecCC--CCHHHHHHHhhcCCceeecc
Q 018482 134 HRVDTTVPI----EDTMGELKK-LVD----EGKIKYIGLSE--ASPDTIRRAHAVHPVTALQM 185 (355)
Q Consensus 134 h~p~~~~~~----~~~~~~L~~-l~~----~Gkir~iGvS~--~~~~~l~~~~~~~~~~~~q~ 185 (355)
+.|+..... +.+++++-+ +.. .++|--||-.+ .+.++++++++..++.++.+
T Consensus 132 ~tpgF~Gs~~~G~~~a~~ali~~~~~~~~~~~~VNii~~~~~~~D~~ei~~lL~~~Gl~v~~~ 194 (454)
T cd01973 132 HTPSFKGSMVTGYDEAVRSVVKTIAKKGAPSGKLNVFTGWVNPGDVVELKHYLSEMDVEANIL 194 (454)
T ss_pred eCCCcCCCHHHHHHHHHHHHHHHhcccCCCCCcEEEECCCCChHHHHHHHHHHHHcCCCEEEe
Confidence 998765332 233333322 222 46688886433 34577888888877766644
No 151
>PF02401 LYTB: LytB protein; InterPro: IPR003451 Terpenes are among the largest groups of natural products and include compounds such as vitamins, cholesterol and carotenoids. The biosynthesis of all terpenoids begins with one or both of the two C5 precursors of the pathway: isopentenyl diphosphate (IPP) and dimethylallyl diphosphate (DMAPP). In animals, fungi, and certain bacteria, the synthesis of IPP and DMAPP occurs via the well-known mevalonate pathway, however, a second, nonmevalonate terpenoid pathway has been identified in many eubacteria, algae and the chloroplasts of higher plants []. LytB(IspH) catalyses the conversion of 1-hydroy-2-methyl-2-(E)-butenyl 4-diphosphate into IPP and DMAPP in this second pathway The enzyme appears to be responsible for a branch-step in the nonmevalonate pathway, in that IPP and DMAPP are produced in parallel from a single precursor although the exact mechanism of this is not currently fully understood []. Escherichia coli LytB protein had been found to regulate the activity of RelA (guanosine 3',5'-bispyrophosphate synthetase I), which in turn controls the level of a regulatory metabolite. It is involved in penicillin tolerance and the stringent response [].; GO: 0019288 isopentenyl diphosphate biosynthetic process, mevalonate-independent pathway, 0055114 oxidation-reduction process; PDB: 3DNF_B 3SZL_B 3KE8_B 3KEF_B 3SZU_A 3KEL_A 3F7T_B 3KE9_B 3KEM_B 3T0G_A ....
Probab=31.27 E-value=1.6e+02 Score=27.38 Aligned_cols=115 Identities=15% Similarity=0.173 Sum_probs=62.7
Q ss_pred HHHHHHHc--CccceeecCCCCHHHHHHHhhc----CCceeeccccc---cccchhhhchHHHHHHhCCcEEecccCCcc
Q 018482 148 ELKKLVDE--GKIKYIGLSEASPDTIRRAHAV----HPVTALQMEWS---LWTRAIEDEIVPLCRELGIGIVPYSPLGRG 218 (355)
Q Consensus 148 ~L~~l~~~--Gkir~iGvS~~~~~~l~~~~~~----~~~~~~q~~~n---~~~~~~~~~~~~~~~~~gi~v~a~spl~~G 218 (355)
.++.+... +++-.+.-++++.+.++++.+. .+-.. ...+| ..+..-+..+.+.+++-++-++.-++-+
T Consensus 145 ~~~~l~~~~~~kv~vvsQTT~~~~~~~~i~~~l~~~~~~~~-~~~~nTIC~aT~~RQ~a~~~La~~vD~miVIGg~~S-- 221 (281)
T PF02401_consen 145 DVEKLPISDPKKVAVVSQTTQSVEKFEEIVEALKKRFPELE-GPVFNTICYATQNRQEAARELAKEVDAMIVIGGKNS-- 221 (281)
T ss_dssp HHHHGGGSSTTCEEEEE-TTS-HHHHHHHHHHHHHHSTCEE--SCC-S--CHHHHHHHHHHHHHCCSSEEEEES-TT---
T ss_pred hhcccCCCCCCeEEEEEeecccHHHHHHHHHHHHHhCcccc-CCCCCCCCHhHHHHHHHHHHHHhhCCEEEEecCCCC--
Confidence 34444433 4677777778888766665443 22111 11122 1122224667777777776665522221
Q ss_pred cCCCCCCCCCCCCccccccCCCCCCcchhhhHHHHHHHHHHHHHcCC------CHHHHHHHHHhhCCCCeeeecCCCCHH
Q 018482 219 FFGGKASVESLPASSILTWHPRFSGENIDKNKILYLRLQKLAEKHEC------NPAQLALAWILHQGDDVAPIPGTTKIK 292 (355)
Q Consensus 219 ~L~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~la~~~~~------s~~qlal~~~l~~~~v~~vIvG~~~~~ 292 (355)
.--.+|.++|++++. ++.++...|+-.... ..+..|+|+|+
T Consensus 222 --------------------------------sNT~kL~eia~~~~~~t~~Ie~~~el~~~~l~~~~~-VGItaGASTP~ 268 (281)
T PF02401_consen 222 --------------------------------SNTRKLAEIAKEHGKPTYHIETADELDPEWLKGVKK-VGITAGASTPD 268 (281)
T ss_dssp --------------------------------HHHHHHHHHHHHCTTCEEEESSGGG--HHHHTT-SE-EEEEE-TTS-H
T ss_pred --------------------------------ccHHHHHHHHHHhCCCEEEeCCccccCHhHhCCCCE-EEEEccCCCCH
Confidence 111578899999874 789999999988764 56778999999
Q ss_pred HHHHHH
Q 018482 293 NLDDNI 298 (355)
Q Consensus 293 ~l~~nl 298 (355)
.+-+.+
T Consensus 269 ~ii~eV 274 (281)
T PF02401_consen 269 WIIEEV 274 (281)
T ss_dssp HHHHHH
T ss_pred HHHHHH
Confidence 776554
No 152
>KOG0059 consensus Lipid exporter ABCA1 and related proteins, ABC superfamily [Lipid transport and metabolism; General function prediction only]
Probab=31.15 E-value=2.4e+02 Score=30.81 Aligned_cols=71 Identities=13% Similarity=0.057 Sum_probs=57.1
Q ss_pred CCHHHHHHHHHHHHHHcCC-C-------------------------cccEEEeccCCCCCC---HHHHHHHHHHHHHcCc
Q 018482 107 GTPEYVRACCEASLKRLDV-E-------------------------YIDLYYQHRVDTTVP---IEDTMGELKKLVDEGK 157 (355)
Q Consensus 107 ~s~~~i~~~~~~sL~~L~~-d-------------------------~iDl~~lh~p~~~~~---~~~~~~~L~~l~~~Gk 157 (355)
..+.++.+.++.+|+.++. + ...++++..|..-.+ ...+|+.+.++++.|+
T Consensus 670 ~~~~di~~~v~~ll~~~~L~~~~~~~~~~ySgG~kRkLs~aialig~p~vi~LDEPstGmDP~arr~lW~ii~~~~k~g~ 749 (885)
T KOG0059|consen 670 LPRSDIGSAIEKLLRLVGLGPYANKQVRTYSGGNKRRLSFAIALIGDPSVILLDEPSTGLDPKARRHLWDIIARLRKNGK 749 (885)
T ss_pred CChhHHHHHHHHHHHHcCChhhhccchhhCCCcchhhHHHHHHHhcCCCEEEecCCCCCCCHHHHHHHHHHHHHHHhcCC
Confidence 4567888899999998875 2 347788888865544 3589999999999999
Q ss_pred cceeecCCCCHHHHHHHhhcCC
Q 018482 158 IKYIGLSEASPDTIRRAHAVHP 179 (355)
Q Consensus 158 ir~iGvS~~~~~~l~~~~~~~~ 179 (355)
+|=+.+|+-++.+.++....
T Consensus 750 --aiiLTSHsMeE~EaLCtR~a 769 (885)
T KOG0059|consen 750 --AIILTSHSMEEAEALCTRTA 769 (885)
T ss_pred --EEEEEcCCHHHHHHHhhhhh
Confidence 99999999999999887633
No 153
>COG4555 NatA ABC-type Na+ transport system, ATPase component [Energy production and conversion / Inorganic ion transport and metabolism]
Probab=31.03 E-value=2e+02 Score=25.66 Aligned_cols=71 Identities=17% Similarity=0.190 Sum_probs=51.1
Q ss_pred cCCCHHHHHHHHHHHHHHcCC-Ccc-------------------------cEEEeccCCCCCCH---HHHHHHHHHHHHc
Q 018482 105 INGTPEYVRACCEASLKRLDV-EYI-------------------------DLYYQHRVDTTVPI---EDTMGELKKLVDE 155 (355)
Q Consensus 105 ~~~s~~~i~~~~~~sL~~L~~-d~i-------------------------Dl~~lh~p~~~~~~---~~~~~~L~~l~~~ 155 (355)
++.+...+++.+++.-++|+. +|+ +++.+.-|..-.++ ...-+.+.+++.+
T Consensus 103 ~~l~~~~~kari~~l~k~l~l~~~~~rRv~~~S~G~kqkV~iARAlvh~P~i~vlDEP~sGLDi~~~r~~~dfi~q~k~e 182 (245)
T COG4555 103 NGLSRKEIKARIAELSKRLQLLEYLDRRVGEFSTGMKQKVAIARALVHDPSILVLDEPTSGLDIRTRRKFHDFIKQLKNE 182 (245)
T ss_pred hhhhhhHHHHHHHHHHHHhChHHHHHHHHhhhchhhHHHHHHHHHHhcCCCeEEEcCCCCCccHHHHHHHHHHHHHhhcC
Confidence 456677788888888888875 333 34444444332332 4667889999999
Q ss_pred CccceeecCCCCHHHHHHHhhc
Q 018482 156 GKIKYIGLSEASPDTIRRAHAV 177 (355)
Q Consensus 156 Gkir~iGvS~~~~~~l~~~~~~ 177 (355)
|+ .+=+|+|..++++.+|+.
T Consensus 183 gr--~viFSSH~m~EvealCDr 202 (245)
T COG4555 183 GR--AVIFSSHIMQEVEALCDR 202 (245)
T ss_pred Cc--EEEEecccHHHHHHhhhe
Confidence 98 888999999999999874
No 154
>PRK07379 coproporphyrinogen III oxidase; Provisional
Probab=30.52 E-value=2.9e+02 Score=26.97 Aligned_cols=60 Identities=20% Similarity=0.065 Sum_probs=34.2
Q ss_pred CCHHHHHHHHHHHHHHcCCCcccEEEecc-CCCC------------CCHH---HHH-HHHHHHHHcCccceeecCCCCH
Q 018482 107 GTPEYVRACCEASLKRLDVEYIDLYYQHR-VDTT------------VPIE---DTM-GELKKLVDEGKIKYIGLSEASP 168 (355)
Q Consensus 107 ~s~~~i~~~~~~sL~~L~~d~iDl~~lh~-p~~~------------~~~~---~~~-~~L~~l~~~Gkir~iGvS~~~~ 168 (355)
-+.+.+++.++..+ .|+.++|.++.+.- |... .+.+ +.+ .+.+.|.+.|-. .+++|||..
T Consensus 179 qt~e~~~~tl~~~~-~l~p~~is~y~L~~~pgT~l~~~~~~g~~~~~~~~~~~~~~~~~~~~L~~~Gy~-~yeisnfa~ 255 (400)
T PRK07379 179 QTLEDWQASLEAAI-ALNPTHLSCYDLVLEPGTAFGKQYQPGKAPLPSDETTAAMYRLAQEILTQAGYE-HYEISNYAK 255 (400)
T ss_pred CCHHHHHHHHHHHH-cCCCCEEEEecceecCCchhHHHhhcCCCCCCCHHHHHHHHHHHHHHHHHcCCc-eeeeeheEC
Confidence 35666766666554 37778887776652 1110 0111 223 355567777764 578888764
No 155
>TIGR02026 BchE magnesium-protoporphyrin IX monomethyl ester anaerobic oxidative cyclase. This model respresents the cobalamin-dependent oxidative cyclase responsible for forming the distinctive E-ring of the chlorin ring system under anaerobic conditions. This step is essential in the biosynthesis of both bacteriochlorophyll and chlorophyll under anaerobic conditions (a separate enzyme, AcsF, acts under aerobic conditions). This model identifies two clades of sequences, one from photosynthetic, non-cyanobacterial bacteria and another including Synechocystis and several non-photosynthetic bacteria. The function of the Synechocystis gene is supported by gene clustering with other photosynthetic genes, so the purpose of the gene in the non-photosynthetic bacteria is uncertain. Note that homologs of this gene are not found in plants which rely solely on the aerobic cyclase.
Probab=30.30 E-value=5e+02 Score=26.09 Aligned_cols=105 Identities=10% Similarity=0.038 Sum_probs=59.5
Q ss_pred CCHHHHHHHHHHHHHHcCCCcccEEEeccCCCCCCHHHHHHHHHHHHHcC-ccceeecCC----C--CHHHHHHHhhcCC
Q 018482 107 GTPEYVRACCEASLKRLDVEYIDLYYQHRVDTTVPIEDTMGELKKLVDEG-KIKYIGLSE----A--SPDTIRRAHAVHP 179 (355)
Q Consensus 107 ~s~~~i~~~~~~sL~~L~~d~iDl~~lh~p~~~~~~~~~~~~L~~l~~~G-kir~iGvS~----~--~~~~l~~~~~~~~ 179 (355)
.+++.+.+.++...++.|+.++ .+...+...+.+.+.+.++.+++.| .--.++++. . +.+ +.+++...+
T Consensus 222 rs~e~Vv~Ei~~l~~~~gv~~~---~~~Dd~f~~~~~~~~~l~~~l~~~~~l~i~w~~~~r~~~i~~d~e-ll~~l~~aG 297 (497)
T TIGR02026 222 RDPKKFVDEIEWLVRTHGVGFF---ILADEEPTINRKKFQEFCEEIIARNPISVTWGINTRVTDIVRDAD-ILHLYRRAG 297 (497)
T ss_pred CCHHHHHHHHHHHHHHcCCCEE---EEEecccccCHHHHHHHHHHHHhcCCCCeEEEEecccccccCCHH-HHHHHHHhC
Confidence 5789999999999888887643 2322222334456677888888887 322344332 1 233 334444344
Q ss_pred ceeeccccccccc------------hhhhchHHHHHHhCCcEEecccC
Q 018482 180 VTALQMEWSLWTR------------AIEDEIVPLCRELGIGIVPYSPL 215 (355)
Q Consensus 180 ~~~~q~~~n~~~~------------~~~~~~~~~~~~~gi~v~a~spl 215 (355)
+..+++-.--.+. ....+.++.|+++||.+.+.--+
T Consensus 298 ~~~v~iGiES~~~~~L~~~~K~~t~~~~~~ai~~l~~~Gi~~~~~~I~ 345 (497)
T TIGR02026 298 LVHISLGTEAAAQATLDHFRKGTTTSTNKEAIRLLRQHNILSEAQFIT 345 (497)
T ss_pred CcEEEEccccCCHHHHHHhcCCCCHHHHHHHHHHHHHCCCcEEEEEEE
Confidence 4444432222221 11257788899999987654333
No 156
>cd03328 MR_like_3 Mandelate racemase (MR)-like subfamily of the enolase superfamily, subgroup 3. Enzymes of this subgroup share three conserved carboxylate ligands for the essential divalent metal ion (usually Mg2+), two aspartates and a glutamate, and conserved catalytic residues, a Lys-X-Lys motif and a conserved histidine-aspartate dyad. This subgroup's function is unknown.
Probab=29.88 E-value=4.9e+02 Score=24.75 Aligned_cols=149 Identities=12% Similarity=0.055 Sum_probs=85.5
Q ss_pred CHHHHHHHHHHHHHcCCCeEeCccCcCCCChhHHHHHHHHhc-C-CCCCEEEEeeccccccCCCCcccCCCHHHHHHHHH
Q 018482 40 PDEVGISIIKHAFDQGITFFDTADVYGPNNANELLVGKALKQ-F-PREKVQLATKFGVVKFDVSGLVINGTPEYVRACCE 117 (355)
Q Consensus 40 ~~~~~~~~l~~A~~~Gi~~~DtA~~Yg~~g~sE~~lg~~L~~-~-~R~~~~i~tK~~~~~~~~~~~~~~~s~~~i~~~~~ 117 (355)
+.++..+-...+++.|++.|=.-- |.+...+.-.-+++++ . +.-++.|=.- ..++.+...+-+
T Consensus 138 ~~e~~~~~a~~~~~~Gf~~~Kikv--g~~~~~d~~~v~~vRe~~G~~~~l~vDaN------------~~~~~~~A~~~~- 202 (352)
T cd03328 138 DDDRLREQLSGWVAQGIPRVKMKI--GRDPRRDPDRVAAARRAIGPDAELFVDAN------------GAYSRKQALALA- 202 (352)
T ss_pred CHHHHHHHHHHHHHCCCCEEEeec--CCCHHHHHHHHHHHHHHcCCCCeEEEECC------------CCCCHHHHHHHH-
Confidence 456666666777889999765321 2101122222334443 2 2223333221 124444432222
Q ss_pred HHHHHcCCCcccEEEeccCCCCCCHHHHHHHHHHHHHc--Ccc-ceeecCCCCHHHHHHHhhcCCceeeccccccccch-
Q 018482 118 ASLKRLDVEYIDLYYQHRVDTTVPIEDTMGELKKLVDE--GKI-KYIGLSEASPDTIRRAHAVHPVTALQMEWSLWTRA- 193 (355)
Q Consensus 118 ~sL~~L~~d~iDl~~lh~p~~~~~~~~~~~~L~~l~~~--Gki-r~iGvS~~~~~~l~~~~~~~~~~~~q~~~n~~~~~- 193 (355)
+.|+. +++.++..|-+ .+-++.+.+|++. -.| -..|=|.++...+..+++....+++|+...-.-.-
T Consensus 203 ~~l~~-----~~~~~~EeP~~----~~d~~~~~~l~~~~~~~iPIa~gE~~~~~~~~~~li~~~a~div~~d~~~~GGit 273 (352)
T cd03328 203 RAFAD-----EGVTWFEEPVS----SDDLAGLRLVRERGPAGMDIAAGEYAYTLAYFRRLLEAHAVDVLQADVTRCGGVT 273 (352)
T ss_pred HHHHH-----hCcchhhCCCC----hhhHHHHHHHHhhCCCCCCEEecccccCHHHHHHHHHcCCCCEEecCccccCCHH
Confidence 23333 35566666532 2346777777776 222 24566778999999999988899999976643211
Q ss_pred hhhchHHHHHHhCCcEEec
Q 018482 194 IEDEIVPLCRELGIGIVPY 212 (355)
Q Consensus 194 ~~~~~~~~~~~~gi~v~a~ 212 (355)
.-..+...|+.+|+.++..
T Consensus 274 ~~~~ia~~A~a~gi~~~~h 292 (352)
T cd03328 274 GFLQAAALAAAHHVDLSAH 292 (352)
T ss_pred HHHHHHHHHHHcCCeeccC
Confidence 1268999999999998865
No 157
>COG2874 FlaH Predicted ATPases involved in biogenesis of archaeal flagella [Cell motility and secretion / Intracellular trafficking and secretion]
Probab=29.75 E-value=2.9e+02 Score=24.82 Aligned_cols=114 Identities=16% Similarity=0.125 Sum_probs=69.7
Q ss_pred HHHHHHHHHHHHcCCCeEeCccCcCCCChhHHHHHHHHhc-----CCCCCEEEEeeccccccCCCCcccCCCHHHHHHHH
Q 018482 42 EVGISIIKHAFDQGITFFDTADVYGPNNANELLVGKALKQ-----FPREKVQLATKFGVVKFDVSGLVINGTPEYVRACC 116 (355)
Q Consensus 42 ~~~~~~l~~A~~~Gi~~~DtA~~Yg~~g~sE~~lg~~L~~-----~~R~~~~i~tK~~~~~~~~~~~~~~~s~~~i~~~~ 116 (355)
--+++++.-+++.|.+..=.+ +|..+-.++++ ++-.+.++.-++....... ......+...+.-+
T Consensus 43 vLsqr~~YG~L~~g~~v~yvs--------Te~T~refi~qm~sl~ydv~~~~l~G~l~~~~~~~--~~~~~~~~~~~~~L 112 (235)
T COG2874 43 VLSQRFAYGFLMNGYRVTYVS--------TELTVREFIKQMESLSYDVSDFLLSGRLLFFPVNL--EPVNWGRRSARKLL 112 (235)
T ss_pred HHHHHHHHHHHhCCceEEEEE--------echhHHHHHHHHHhcCCCchHHHhcceeEEEEecc--cccccChHHHHHHH
Confidence 346788888899998865433 66666777766 2223333333332221100 00123455556666
Q ss_pred HHHHHHcCCCcccEEEeccCCCCC------CHHHHHHHHHHHHHcCccceeecCC
Q 018482 117 EASLKRLDVEYIDLYYQHRVDTTV------PIEDTMGELKKLVDEGKIKYIGLSE 165 (355)
Q Consensus 117 ~~sL~~L~~d~iDl~~lh~p~~~~------~~~~~~~~L~~l~~~Gkir~iGvS~ 165 (355)
+..++..+.-.-|++.+++.+... .+.+.+..++.|.+.||+--+-+.-
T Consensus 113 ~~l~~~~k~~~~dViIIDSls~~~~~~~~~~vl~fm~~~r~l~d~gKvIilTvhp 167 (235)
T COG2874 113 DLLLEFIKRWEKDVIIIDSLSAFATYDSEDAVLNFMTFLRKLSDLGKVIILTVHP 167 (235)
T ss_pred HHHHhhHHhhcCCEEEEecccHHhhcccHHHHHHHHHHHHHHHhCCCEEEEEeCh
Confidence 677777776677999999986432 2345677778888899988777754
No 158
>COG4464 CapC Capsular polysaccharide biosynthesis protein [Carbohydrate transport and metabolism / Cell envelope biogenesis, outer membrane]
Probab=29.28 E-value=2.2e+02 Score=25.42 Aligned_cols=28 Identities=18% Similarity=0.177 Sum_probs=23.9
Q ss_pred CHHHHHHHHHHHHHcCCCeEeCccCcCC
Q 018482 40 PDEVGISIIKHAFDQGITFFDTADVYGP 67 (355)
Q Consensus 40 ~~~~~~~~l~~A~~~Gi~~~DtA~~Yg~ 67 (355)
+.++..++++.|.+.||+-+=..++|-.
T Consensus 18 s~eesl~ml~~A~~qGvt~iVaTsHh~~ 45 (254)
T COG4464 18 SLEESLAMLREAVRQGVTKIVATSHHLH 45 (254)
T ss_pred cHHHHHHHHHHHHHcCceEEeecccccC
Confidence 8899999999999999998776666653
No 159
>PF00809 Pterin_bind: Pterin binding enzyme This Prosite entry is a subset of the Pfam family; InterPro: IPR000489 The ~250-residue pterin-binding domain has been shown to adopt a (beta/alpha)8 barrel fold, which has the overall shape of a distorted cylinder. It has eight alpha-helices stacked around the outside of an inner cylinder of parallel beta-strands. The pterin ring binds at the bottom of the (beta/alpha;)8 barrel in a polar cup-like region that is relatively solvent exposed and fairly negatively charged. The pterin ring is partially buried within the (beta/alpha)8 barrel. The pterin binding residues are highly conserved and include aspartate and asparagine residues located at the C terminus of the beta-strands of the barrel, which are predicted to form hydrogen bonds with the nitrogen and oxygen atoms of the pterin ring [, , ]. Some proteins known to contain a pterin-binding domain are listed below: Prokaryotic and eukaryotic B12-dependent methionine synthase (MetH) (2.1.1.13 from EC), a large, modular protein that catalyzes the transfer of a methyl group from methyltetrahydrofolate (CH3-H4folate) to Hcy to form methionine, using cobalamin as an intermediate methyl carrier. Prokaryotic and eukaryotic dihydropteroate synthase (DHPS) (2.5.1.15 from EC). It catalyzes the condensation of para-aminobenzoic acid (pABA) with 7,8- dihydropterin-pyrophosphate (DHPPP), eliminating pyrophosphate to form 7,8- dihydropteroate which is subsequently converted to tetrahydrofolate. Moorella thermoacetica 5-methyltetrahydrofolate corrinoid/iron sulphur protein methyltransferase (MeTr). It transfers the N5-methyl group from CH3-H4folate to a cob(I)amide centre in another protein, the corrinoid iron sulphur protein. ; GO: 0042558 pteridine-containing compound metabolic process; PDB: 2VP8_B 2BMB_A 2Y5S_B 2Y5J_A 3BOF_B 1Q7Q_B 1Q85_B 1Q7Z_A 1Q7M_A 1Q8A_B ....
Probab=29.08 E-value=3.4e+02 Score=23.71 Aligned_cols=89 Identities=17% Similarity=0.206 Sum_probs=54.3
Q ss_pred HHcCCCcccEEEec-cCCCC-CCHHH----HHHHHHHHHH--cCccceeecCCCCHHHHHHHhhcCCceeeccccccccc
Q 018482 121 KRLDVEYIDLYYQH-RVDTT-VPIED----TMGELKKLVD--EGKIKYIGLSEASPDTIRRAHAVHPVTALQMEWSLWTR 192 (355)
Q Consensus 121 ~~L~~d~iDl~~lh-~p~~~-~~~~~----~~~~L~~l~~--~Gkir~iGvS~~~~~~l~~~~~~~~~~~~q~~~n~~~~ 192 (355)
..-|.++||+---- +|... .+.++ +...++.+++ .+. -|.+-+++++.++.+++. +.+++.--.+.-.
T Consensus 29 ~~~GAdiIDIg~~st~p~~~~v~~~eE~~rl~~~l~~i~~~~~~~--plSIDT~~~~v~~~aL~~-g~~~ind~~~~~~- 104 (210)
T PF00809_consen 29 VEAGADIIDIGAESTRPGATPVSEEEEMERLVPVLQAIREENPDV--PLSIDTFNPEVAEAALKA-GADIINDISGFED- 104 (210)
T ss_dssp HHTT-SEEEEESSTSSTTSSSSHHHHHHHHHHHHHHHHHHHHTTS--EEEEEESSHHHHHHHHHH-TSSEEEETTTTSS-
T ss_pred HHhcCCEEEecccccCCCCCcCCHHHHHHHHHHHHHHHhccCCCe--EEEEECCCHHHHHHHHHc-CcceEEecccccc-
Confidence 34578899986433 33321 22333 3444555553 233 677888999999999987 4443332222211
Q ss_pred hhhhchHHHHHHhCCcEEecccC
Q 018482 193 AIEDEIVPLCRELGIGIVPYSPL 215 (355)
Q Consensus 193 ~~~~~~~~~~~~~gi~v~a~spl 215 (355)
..++++.++++|..++++.--
T Consensus 105 --~~~~~~l~a~~~~~vV~m~~~ 125 (210)
T PF00809_consen 105 --DPEMLPLAAEYGAPVVLMHSD 125 (210)
T ss_dssp --STTHHHHHHHHTSEEEEESES
T ss_pred --cchhhhhhhcCCCEEEEEecc
Confidence 367999999999999987555
No 160
>PRK12331 oxaloacetate decarboxylase; Provisional
Probab=29.06 E-value=5.9e+02 Score=25.38 Aligned_cols=116 Identities=14% Similarity=0.056 Sum_probs=0.0
Q ss_pred EEEeeccccccCCCCcccCCCHHHHHHHHHHHHHHcCCCcccEE---------EeccCCCCCCHHHHHHHHHHHHHc-Cc
Q 018482 88 QLATKFGVVKFDVSGLVINGTPEYVRACCEASLKRLDVEYIDLY---------YQHRVDTTVPIEDTMGELKKLVDE-GK 157 (355)
Q Consensus 88 ~i~tK~~~~~~~~~~~~~~~s~~~i~~~~~~sL~~L~~d~iDl~---------~lh~p~~~~~~~~~~~~L~~l~~~-Gk 157 (355)
+..+=+...+...+.....++.+...+-++. |.++|++.|.+. -..+++ -|+.++.+++. ..
T Consensus 4 V~I~DtTlRDG~Qs~~~~~~~t~dkl~ia~~-Ld~~Gv~~IE~~ggatf~~~~~f~~e~-------p~e~l~~l~~~~~~ 75 (448)
T PRK12331 4 IKITETVLRDGQQSLIATRMTTEEMLPILEK-LDNAGYHSLEMWGGATFDACLRFLNED-------PWERLRKIRKAVKK 75 (448)
T ss_pred cEEEECCCCccccCcCCcccCHHHHHHHHHH-HHHcCCCEEEecCCccchhhhccCCCC-------HHHHHHHHHHhCCC
Q ss_pred cce---------eecCCCCHHHHHHHhhc---CCceeeccccccccchhhhchHHHHHHhCCcEEe
Q 018482 158 IKY---------IGLSEASPDTIRRAHAV---HPVTALQMEWSLWTRAIEDEIVPLCRELGIGIVP 211 (355)
Q Consensus 158 ir~---------iGvS~~~~~~l~~~~~~---~~~~~~q~~~n~~~~~~~~~~~~~~~~~gi~v~a 211 (355)
++. +|.+++..+.+++.++. .+++++.+-..+-...--...+++++++|..+.+
T Consensus 76 ~~l~~l~r~~N~~G~~~~pddvv~~~v~~A~~~Gvd~irif~~lnd~~n~~~~v~~ak~~G~~v~~ 141 (448)
T PRK12331 76 TKLQMLLRGQNLLGYRNYADDVVESFVQKSVENGIDIIRIFDALNDVRNLETAVKATKKAGGHAQV 141 (448)
T ss_pred CEEEEEeccccccccccCchhhHHHHHHHHHHCCCCEEEEEEecCcHHHHHHHHHHHHHcCCeEEE
No 161
>cd00408 DHDPS-like Dihydrodipicolinate synthase family. A member of the class I aldolases, which use an active-site lysine which stablilzes a reaction intermediate via Schiff base formation, and have TIM beta/alpha barrel fold. The dihydrodipicolinate synthase family comprises several pyruvate-dependent class I aldolases that use the same catalytic step to catalyze different reactions in different pathways and includes such proteins as N-acetylneuraminate lyase, MosA protein, 5-keto-4-deoxy-glucarate dehydratase, trans-o-hydroxybenzylidenepyruvate hydratase-aldolase, trans-2'-carboxybenzalpyruvate hydratase-aldolase, and 2-keto-3-deoxy- gluconate aldolase. The family is also referred to as the N-acetylneuraminate lyase (NAL) family.
Probab=28.88 E-value=4.5e+02 Score=23.91 Aligned_cols=133 Identities=13% Similarity=0.133 Sum_probs=66.5
Q ss_pred CCHHHHHHHHHHHHHcCCCeEeCccCcCCC---Chh--HHHHHHHHhcCCCCCEEEEeeccccccCCCCcccCCCHHHHH
Q 018482 39 VPDEVGISIIKHAFDQGITFFDTADVYGPN---NAN--ELLVGKALKQFPREKVQLATKFGVVKFDVSGLVINGTPEYVR 113 (355)
Q Consensus 39 ~~~~~~~~~l~~A~~~Gi~~~DtA~~Yg~~---g~s--E~~lg~~L~~~~R~~~~i~tK~~~~~~~~~~~~~~~s~~~i~ 113 (355)
+|.+...+.++..++.|++-|-...+.|.. ... .+++..+.+.. ..++-|..-++.. +.....
T Consensus 15 iD~~~~~~~i~~l~~~Gv~gi~~~GstGE~~~ls~~Er~~l~~~~~~~~-~~~~~vi~gv~~~-----------~~~~~i 82 (281)
T cd00408 15 VDLDALRRLVEFLIEAGVDGLVVLGTTGEAPTLTDEERKEVIEAVVEAV-AGRVPVIAGVGAN-----------STREAI 82 (281)
T ss_pred cCHHHHHHHHHHHHHcCCCEEEECCCCcccccCCHHHHHHHHHHHHHHh-CCCCeEEEecCCc-----------cHHHHH
Confidence 588999999999999999988766555431 112 23344444432 2334444443322 122222
Q ss_pred HHHHHHHHHcCCCcccEEEeccCCCCC-CHHHHHHHHHHHHHcCcccee-----ec--CCCCHHHHHHHhhcCCceeecc
Q 018482 114 ACCEASLKRLDVEYIDLYYQHRVDTTV-PIEDTMGELKKLVDEGKIKYI-----GL--SEASPDTIRRAHAVHPVTALQM 185 (355)
Q Consensus 114 ~~~~~sL~~L~~d~iDl~~lh~p~~~~-~~~~~~~~L~~l~~~Gkir~i-----Gv--S~~~~~~l~~~~~~~~~~~~q~ 185 (355)
+..+ ..+.+|. |.+++.-|.... .-+++++.+.++.+.-.+--+ +. .+.+++.+.++.+ .+.++-+
T Consensus 83 ~~a~-~a~~~Ga---d~v~v~pP~y~~~~~~~~~~~~~~ia~~~~~pi~iYn~P~~tg~~l~~~~~~~L~~--~~~v~gi 156 (281)
T cd00408 83 ELAR-HAEEAGA---DGVLVVPPYYNKPSQEGIVAHFKAVADASDLPVILYNIPGRTGVDLSPETIARLAE--HPNIVGI 156 (281)
T ss_pred HHHH-HHHHcCC---CEEEECCCcCCCCCHHHHHHHHHHHHhcCCCCEEEEECccccCCCCCHHHHHHHhc--CCCEEEE
Confidence 2222 2344453 555665554322 345666666666664221111 01 1345666666664 2244445
Q ss_pred cccc
Q 018482 186 EWSL 189 (355)
Q Consensus 186 ~~n~ 189 (355)
.++.
T Consensus 157 K~s~ 160 (281)
T cd00408 157 KDSS 160 (281)
T ss_pred EeCC
Confidence 5544
No 162
>PRK04390 rnpA ribonuclease P; Reviewed
Probab=28.52 E-value=3e+02 Score=21.82 Aligned_cols=49 Identities=10% Similarity=0.186 Sum_probs=34.3
Q ss_pred CCHHHHHHHHHHHHHHcC--CCcccEEEeccCCCC-CCHHHHHHHHHHHHHc
Q 018482 107 GTPEYVRACCEASLKRLD--VEYIDLYYQHRVDTT-VPIEDTMGELKKLVDE 155 (355)
Q Consensus 107 ~s~~~i~~~~~~sL~~L~--~d~iDl~~lh~p~~~-~~~~~~~~~L~~l~~~ 155 (355)
..+..+++.+.++++... +...|++++..+... .+..++.+.|..|.+.
T Consensus 59 V~RNRiKR~lRE~~R~~~~~l~~~DiVvi~r~~~~~~~~~~l~~~l~~ll~k 110 (120)
T PRK04390 59 VERNYMKRVIREWFRLNQHRLPPVDFVVRVQRKFDRATAKQAVAELAQLMAK 110 (120)
T ss_pred hhhhHHHHHHHHHHHhccccCCCceEEEEeCCCcccCCHHHHHHHHHHHHHH
Confidence 567888888888887654 235699999998643 4566666666665543
No 163
>cd03317 NAAAR N-acylamino acid racemase (NAAAR), an octameric enzyme that catalyzes the racemization of N-acylamino acids. NAAARs act on a broad range of N-acylamino acids rather than amino acids. Enantiopure amino acids are of industrial interest as chiral building blocks for antibiotics, herbicides, and drugs. NAAAR is a member of the enolase superfamily, characterized by the presence of an enolate anion intermediate which is generated by abstraction of the alpha-proton of the carboxylate substrate by an active site residue and is stabilized by coordination to the essential Mg2+ ion.
Probab=28.49 E-value=5.1e+02 Score=24.49 Aligned_cols=148 Identities=20% Similarity=0.159 Sum_probs=87.7
Q ss_pred HHHHHHHHHHHHcCCCeEeCccCcCCCChhHHHHHHHHhc-CCCCCEEEEeeccccccCCCCcccCCCHHHHHHHHHHHH
Q 018482 42 EVGISIIKHAFDQGITFFDTADVYGPNNANELLVGKALKQ-FPREKVQLATKFGVVKFDVSGLVINGTPEYVRACCEASL 120 (355)
Q Consensus 42 ~~~~~~l~~A~~~Gi~~~DtA~~Yg~~g~sE~~lg~~L~~-~~R~~~~i~tK~~~~~~~~~~~~~~~s~~~i~~~~~~sL 120 (355)
++..+.+..+.+.|++.|=.-- +. ....+.+ +++++ .+ ++-|..=.. ..++.+... .+
T Consensus 139 ~~~~~~~~~~~~~Gf~~~KiKv--~~-~~d~~~l-~~vr~~~g--~~~l~lDaN----------~~~~~~~a~-----~~ 197 (354)
T cd03317 139 EQLLKQIERYLEEGYKRIKLKI--KP-GWDVEPL-KAVRERFP--DIPLMADAN----------SAYTLADIP-----LL 197 (354)
T ss_pred HHHHHHHHHHHHcCCcEEEEec--Ch-HHHHHHH-HHHHHHCC--CCeEEEECC----------CCCCHHHHH-----HH
Confidence 6677788888899998874321 21 1122333 33333 22 322222111 124554432 23
Q ss_pred HHcCCCcccEEEeccCCCCCCHHHHHHHHHHHHHcCc-cceeecCCCCHHHHHHHhhcCCceeeccccccccch-hhhch
Q 018482 121 KRLDVEYIDLYYQHRVDTTVPIEDTMGELKKLVDEGK-IKYIGLSEASPDTIRRAHAVHPVTALQMEWSLWTRA-IEDEI 198 (355)
Q Consensus 121 ~~L~~d~iDl~~lh~p~~~~~~~~~~~~L~~l~~~Gk-ir~iGvS~~~~~~l~~~~~~~~~~~~q~~~n~~~~~-~~~~~ 198 (355)
++|. ..++.++..|-. .+-++.+.++++.-. =-..|=|.++...+..+++...++++|+.....-.- .-..+
T Consensus 198 ~~l~--~~~i~~iEeP~~----~~d~~~~~~l~~~~~~pia~dEs~~~~~~~~~~~~~~~~d~~~ik~~~~GGit~~~~i 271 (354)
T cd03317 198 KRLD--EYGLLMIEQPLA----ADDLIDHAELQKLLKTPICLDESIQSAEDARKAIELGACKIINIKPGRVGGLTEALKI 271 (354)
T ss_pred HHhh--cCCccEEECCCC----hhHHHHHHHHHhhcCCCEEeCCccCCHHHHHHHHHcCCCCEEEecccccCCHHHHHHH
Confidence 4442 346777776643 233666777766533 235677788999999999888889999876543221 12678
Q ss_pred HHHHHHhCCcEEecccCC
Q 018482 199 VPLCRELGIGIVPYSPLG 216 (355)
Q Consensus 199 ~~~~~~~gi~v~a~spl~ 216 (355)
...|+.+|+.++..+.+.
T Consensus 272 ~~~A~~~gi~~~~g~~~e 289 (354)
T cd03317 272 HDLCQEHGIPVWCGGMLE 289 (354)
T ss_pred HHHHHHcCCcEEecCccc
Confidence 999999999987654443
No 164
>PRK10415 tRNA-dihydrouridine synthase B; Provisional
Probab=28.47 E-value=5.1e+02 Score=24.41 Aligned_cols=136 Identities=12% Similarity=0.035 Sum_probs=79.1
Q ss_pred CHHHHHHHHHHHHHcCCCeEeCc---c-------CcCCC-ChhHHHHHHHHhcCC-CCCEEEEeeccccccCCCCcccCC
Q 018482 40 PDEVGISIIKHAFDQGITFFDTA---D-------VYGPN-NANELLVGKALKQFP-REKVQLATKFGVVKFDVSGLVING 107 (355)
Q Consensus 40 ~~~~~~~~l~~A~~~Gi~~~DtA---~-------~Yg~~-g~sE~~lg~~L~~~~-R~~~~i~tK~~~~~~~~~~~~~~~ 107 (355)
+.++..+..+.+.+.|+..||.- | .+|.. ...-+.+.+.++... --++-|+.|+...+. .
T Consensus 75 ~~~~~~~aa~~~~~~g~d~IdlN~gCP~~~v~~~g~Gs~ll~~p~~~~eiv~av~~a~d~pv~vKiR~G~~--------~ 146 (321)
T PRK10415 75 DPKEMADAARINVESGAQIIDINMGCPAKKVNRKLAGSALLQYPDLVKSILTEVVNAVDVPVTLKIRTGWA--------P 146 (321)
T ss_pred CHHHHHHHHHHHHHCCCCEEEEeCCCCHHHHcCCCcccHHhcCHHHHHHHHHHHHHhcCCceEEEEEcccc--------C
Confidence 66777777777788999999942 1 11110 011333444444311 114457777753221 1
Q ss_pred CHHHHHHHHHHHHHHcCCCcccEEEeccCCCCCC--HHHHHHHHHHHHHcCccceeecCCC-CHHHHHHHhhcCCceeec
Q 018482 108 TPEYVRACCEASLKRLDVEYIDLYYQHRVDTTVP--IEDTMGELKKLVDEGKIKYIGLSEA-SPDTIRRAHAVHPVTALQ 184 (355)
Q Consensus 108 s~~~i~~~~~~sL~~L~~d~iDl~~lh~p~~~~~--~~~~~~~L~~l~~~Gkir~iGvS~~-~~~~l~~~~~~~~~~~~q 184 (355)
+..... .+-+.++..|. |.+.+|.-..... -..-|+.+.++++.=.|--||...- +.+.++++++..+.+.+|
T Consensus 147 ~~~~~~-~~a~~le~~G~---d~i~vh~rt~~~~~~G~a~~~~i~~ik~~~~iPVI~nGgI~s~~da~~~l~~~gadgVm 222 (321)
T PRK10415 147 EHRNCV-EIAQLAEDCGI---QALTIHGRTRACLFNGEAEYDSIRAVKQKVSIPVIANGDITDPLKARAVLDYTGADALM 222 (321)
T ss_pred CcchHH-HHHHHHHHhCC---CEEEEecCccccccCCCcChHHHHHHHHhcCCcEEEeCCCCCHHHHHHHHhccCCCEEE
Confidence 111121 23344667774 6678886542211 1134788888888767888887764 788888888877888888
Q ss_pred ccc
Q 018482 185 MEW 187 (355)
Q Consensus 185 ~~~ 187 (355)
+--
T Consensus 223 iGR 225 (321)
T PRK10415 223 IGR 225 (321)
T ss_pred ECh
Confidence 743
No 165
>PRK09061 D-glutamate deacylase; Validated
Probab=28.42 E-value=5.1e+02 Score=26.17 Aligned_cols=106 Identities=11% Similarity=0.080 Sum_probs=60.7
Q ss_pred HHHHHHHHHHHcCCCeEeCccCcCCCChhHHHHHHHHhcCCCCCEEEEeeccccccCCCCcccCCCHHHHHHHHHHHHHH
Q 018482 43 VGISIIKHAFDQGITFFDTADVYGPNNANELLVGKALKQFPREKVQLATKFGVVKFDVSGLVINGTPEYVRACCEASLKR 122 (355)
Q Consensus 43 ~~~~~l~~A~~~Gi~~~DtA~~Yg~~g~sE~~lg~~L~~~~R~~~~i~tK~~~~~~~~~~~~~~~s~~~i~~~~~~sL~~ 122 (355)
+..++++.|++.|+..|=+...|-. +.+...+-+.++...+.+..|..-+..... .+.....+++++.++.
T Consensus 170 ~m~~ll~~al~~Ga~gis~~~~y~p-~~~~~eL~~l~~~A~~~g~~v~~H~e~~~~--------~~~~~e~~av~~~i~l 240 (509)
T PRK09061 170 EILELLEQGLDEGALGIGIGAGYAP-GTGHKEYLELARLAARAGVPTYTHVRYLSN--------VDPRSSVDAYQELIAA 240 (509)
T ss_pred HHHHHHHHHHHCCCCEEecCCccCC-CCCHHHHHHHHHHHHHcCCEEEEEecCccc--------CCchhHHHHHHHHHHH
Confidence 3677888899999999987666643 445556666666544556666666543210 0112223344444433
Q ss_pred cCCCcccEEEeccCC-CCCCHHHHHHHHHHHHHcCc
Q 018482 123 LDVEYIDLYYQHRVD-TTVPIEDTMGELKKLVDEGK 157 (355)
Q Consensus 123 L~~d~iDl~~lh~p~-~~~~~~~~~~~L~~l~~~Gk 157 (355)
....-.-+.+.|-.. ......+.++.+++.+++|.
T Consensus 241 A~~~G~rv~IsHlss~g~~~~~~~le~I~~Ar~~Gi 276 (509)
T PRK09061 241 AAETGAHMHICHVNSTSLRDIDRCLALVEKAQAQGL 276 (509)
T ss_pred HHHhCCCEEEEeeccCCcccHHHHHHHHHHHHHcCC
Confidence 321112355556432 12345778889999999885
No 166
>COG0218 Predicted GTPase [General function prediction only]
Probab=28.37 E-value=4.1e+02 Score=23.35 Aligned_cols=99 Identities=9% Similarity=-0.060 Sum_probs=68.5
Q ss_pred HHHHHHHHHH------HcCCCeEeCccCcCCCChhHHHHHHHHhcCCCCCEEEEeeccccccCCCCcccCCCHHHHHHHH
Q 018482 43 VGISIIKHAF------DQGITFFDTADVYGPNNANELLVGKALKQFPREKVQLATKFGVVKFDVSGLVINGTPEYVRACC 116 (355)
Q Consensus 43 ~~~~~l~~A~------~~Gi~~~DtA~~Yg~~g~sE~~lg~~L~~~~R~~~~i~tK~~~~~~~~~~~~~~~s~~~i~~~~ 116 (355)
.-.+++...+ ...+-++|.-..-- ..+..+=++|......=+++.||.-- .......+.+
T Consensus 92 ~w~~~i~~YL~~R~~L~~vvlliD~r~~~~---~~D~em~~~l~~~~i~~~vv~tK~DK-----------i~~~~~~k~l 157 (200)
T COG0218 92 KWKKLIEEYLEKRANLKGVVLLIDARHPPK---DLDREMIEFLLELGIPVIVVLTKADK-----------LKKSERNKQL 157 (200)
T ss_pred HHHHHHHHHHhhchhheEEEEEEECCCCCc---HHHHHHHHHHHHcCCCeEEEEEcccc-----------CChhHHHHHH
Confidence 3455555554 45667888765443 36778888888777788899999753 3456677788
Q ss_pred HHHHHHcCCCcccE--EEeccCCCCCCHHHHHHHHHHHHHc
Q 018482 117 EASLKRLDVEYIDL--YYQHRVDTTVPIEDTMGELKKLVDE 155 (355)
Q Consensus 117 ~~sL~~L~~d~iDl--~~lh~p~~~~~~~~~~~~L~~l~~~ 155 (355)
....+.|+.+..|- +++.+......++++++.+.+....
T Consensus 158 ~~v~~~l~~~~~~~~~~~~~ss~~k~Gi~~l~~~i~~~~~~ 198 (200)
T COG0218 158 NKVAEELKKPPPDDQWVVLFSSLKKKGIDELKAKILEWLKE 198 (200)
T ss_pred HHHHHHhcCCCCccceEEEEecccccCHHHHHHHHHHHhhc
Confidence 88888888776665 5555555556688888888876653
No 167
>PF07287 DUF1446: Protein of unknown function (DUF1446); InterPro: IPR010839 This family consists of several bacterial and plant proteins of around 400 residues in length. The function of this family is unknown.
Probab=28.19 E-value=1.9e+02 Score=28.02 Aligned_cols=40 Identities=15% Similarity=0.228 Sum_probs=28.6
Q ss_pred hchHHHHHHhCCcEEecccCCcccCCCCCCCCCCCCccccccCCCCCCcchhhhHHHHHHHHHHHHHcCCC
Q 018482 196 DEIVPLCRELGIGIVPYSPLGRGFFGGKASVESLPASSILTWHPRFSGENIDKNKILYLRLQKLAEKHECN 266 (355)
Q Consensus 196 ~~~~~~~~~~gi~v~a~spl~~G~L~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~la~~~~~s 266 (355)
+.+++.|+++||.++.-+ +|. . -....+.+.+++++.|.+
T Consensus 61 ~~~L~~~~~~gIkvI~Na---Gg~-n---------------------------p~~~a~~v~eia~e~Gl~ 100 (362)
T PF07287_consen 61 RPLLPAAAEKGIKVITNA---GGL-N---------------------------PAGCADIVREIARELGLS 100 (362)
T ss_pred HHHHHHHHhCCCCEEEeC---CCC-C---------------------------HHHHHHHHHHHHHhcCCC
Confidence 678999999999998863 232 1 122567888888888764
No 168
>COG2185 Sbm Methylmalonyl-CoA mutase, C-terminal domain/subunit (cobalamin-binding) [Lipid metabolism]
Probab=28.18 E-value=3.5e+02 Score=22.43 Aligned_cols=58 Identities=21% Similarity=0.245 Sum_probs=42.8
Q ss_pred cceeecCCCCH--HHHHHHhhcCCceeeccccccccchhhhchHHHHHHhCCcEEecccCCccc
Q 018482 158 IKYIGLSEASP--DTIRRAHAVHPVTALQMEWSLWTRAIEDEIVPLCRELGIGIVPYSPLGRGF 219 (355)
Q Consensus 158 ir~iGvS~~~~--~~l~~~~~~~~~~~~q~~~n~~~~~~~~~~~~~~~~~gi~v~a~spl~~G~ 219 (355)
+-.+|...|+. ..+..++...+|.++.. .+.+.. .+.+..+.++++.++.-|.+.++.
T Consensus 17 vak~GlDgHd~gakvia~~l~d~GfeVi~~---g~~~tp-~e~v~aA~~~dv~vIgvSsl~g~h 76 (143)
T COG2185 17 VAKLGLDGHDRGAKVIARALADAGFEVINL---GLFQTP-EEAVRAAVEEDVDVIGVSSLDGGH 76 (143)
T ss_pred EeccCccccccchHHHHHHHHhCCceEEec---CCcCCH-HHHHHHHHhcCCCEEEEEeccchH
Confidence 33457777754 67888888888887655 333333 678888999999999999998775
No 169
>PF14502 HTH_41: Helix-turn-helix domain
Probab=28.09 E-value=51 Score=21.82 Aligned_cols=29 Identities=21% Similarity=0.244 Sum_probs=24.0
Q ss_pred HHHHHHHHHHcCCC--HHHHHHHHHhhCCCC
Q 018482 253 YLRLQKLAEKHECN--PAQLALAWILHQGDD 281 (355)
Q Consensus 253 ~~~l~~la~~~~~s--~~qlal~~~l~~~~v 281 (355)
++.+.++++++++| ..|-||+++-..+.|
T Consensus 6 i~tI~e~~~~~~vs~GtiQ~Alk~Le~~gaI 36 (48)
T PF14502_consen 6 IPTISEYSEKFGVSRGTIQNALKFLEENGAI 36 (48)
T ss_pred cCCHHHHHHHhCcchhHHHHHHHHHHHCCcE
Confidence 35688999999988 578899999988864
No 170
>PRK14457 ribosomal RNA large subunit methyltransferase N; Provisional
Probab=28.03 E-value=5.4e+02 Score=24.61 Aligned_cols=136 Identities=13% Similarity=0.075 Sum_probs=80.5
Q ss_pred CCCCEEEEeeccccccCC------CCcccCCCHHHHHHHHHHHHHHcCCCcccEEEecc-CCCCCCHHHHHHHHHHHHHc
Q 018482 83 PREKVQLATKFGVVKFDV------SGLVINGTPEYVRACCEASLKRLDVEYIDLYYQHR-VDTTVPIEDTMGELKKLVDE 155 (355)
Q Consensus 83 ~R~~~~i~tK~~~~~~~~------~~~~~~~s~~~i~~~~~~sL~~L~~d~iDl~~lh~-p~~~~~~~~~~~~L~~l~~~ 155 (355)
.|..++|+|.+|...... .+.....+++.|..++....+.++. .++-+.+-. =++....+.+.++++.+.+.
T Consensus 99 ~r~t~cvSsqvGC~~~C~FC~tg~~g~~rnlt~~EIv~qv~~~~~~~~~-~~~~IvfmGmGEPlln~~~v~~~i~~l~~~ 177 (345)
T PRK14457 99 KRLTVCVSSQVGCPMACDFCATGKGGLKRSLKAHEIVDQVLTVQEDMQR-RVSHVVFMGMGEPLLNIDEVLAAIRCLNQD 177 (345)
T ss_pred CCCEEEEeCCCCCCCcCCcCCCCCCCCccccCHHHHHHHHHHHHHHhcC-CCCEEEEEecCccccCHHHHHHHHHHHhcc
Confidence 466788888877544321 1223357899999999988877752 355444443 34445567888999998875
Q ss_pred -Cc-cceeecCCCC-HHHHHHHhhcC------Cceeeccccccccchh----------------hhchHHHHHHhCCcEE
Q 018482 156 -GK-IKYIGLSEAS-PDTIRRAHAVH------PVTALQMEWSLWTRAI----------------EDEIVPLCRELGIGIV 210 (355)
Q Consensus 156 -Gk-ir~iGvS~~~-~~~l~~~~~~~------~~~~~q~~~n~~~~~~----------------~~~~~~~~~~~gi~v~ 210 (355)
|. .|.|-||+.. .+.+.++.+.. ....+.+..|..+... -..+.+++.+.|-.+.
T Consensus 178 ~~i~~r~itvST~G~~~~i~~L~~~~~~~~~~~~~~laiSLha~~~e~r~~i~p~~~~~~l~~l~~~~~~y~~~~gr~I~ 257 (345)
T PRK14457 178 LGIGQRRITVSTVGVPKTIPQLAELAFQRLGRLQFTLAVSLHAPNQKLRETLIPSAKNYPIENLLEDCRHYVAITGRRVS 257 (345)
T ss_pred cCCccCceEEECCCchhhHHHHHhhhhhhcccCceEEEEEeCCCCHHHHHHhcCCccCCCHHHHHHHHHHHHHHhCCEEE
Confidence 43 4677777753 34566665543 1223444444333211 1334455666677777
Q ss_pred ecccCCccc
Q 018482 211 PYSPLGRGF 219 (355)
Q Consensus 211 a~spl~~G~ 219 (355)
.--|+-.|+
T Consensus 258 iey~LIpGv 266 (345)
T PRK14457 258 FEYILLGGV 266 (345)
T ss_pred EEEEEECCc
Confidence 766776554
No 171
>PRK14459 ribosomal RNA large subunit methyltransferase N; Provisional
Probab=27.98 E-value=3.6e+02 Score=26.19 Aligned_cols=93 Identities=14% Similarity=0.125 Sum_probs=60.5
Q ss_pred CcccEEEeccCCCC-----------CCHHHHHHHHHHHH-HcCc---cceeecCC--CCHHH---HHHHhhcC---Ccee
Q 018482 126 EYIDLYYQHRVDTT-----------VPIEDTMGELKKLV-DEGK---IKYIGLSE--ASPDT---IRRAHAVH---PVTA 182 (355)
Q Consensus 126 d~iDl~~lh~p~~~-----------~~~~~~~~~L~~l~-~~Gk---ir~iGvS~--~~~~~---l~~~~~~~---~~~~ 182 (355)
++-=.+-||.++++ .+++++++++.++. +.|+ |.|+=+.. .+.+. +.+++... +..+
T Consensus 237 ~~~LavSLha~d~e~R~~l~p~n~~~~l~~ll~a~~~~~~~~grrv~ieyvLi~GvNDs~e~a~~L~~llk~~~~~~~~V 316 (373)
T PRK14459 237 PVTLAVSLHAPDDELRDELVPVNTRWKVDEVLDAARYYADATGRRVSIEYALIRDINDQPWRADLLGKKLHGRGGGWVHV 316 (373)
T ss_pred CeEEEEEeCCCCHHHHHHhcCcccCCCHHHHHHHHHHHHHHhCCEEEEEEEEeCCCCCCHHHHHHHHHHHhhccCCCeEE
Confidence 33345789999653 24688999988877 4465 55664442 24444 44444444 5678
Q ss_pred eccccccccch-h-------hhchHHHHHHhCCcEEecccCCcc
Q 018482 183 LQMEWSLWTRA-I-------EDEIVPLCRELGIGIVPYSPLGRG 218 (355)
Q Consensus 183 ~q~~~n~~~~~-~-------~~~~~~~~~~~gi~v~a~spl~~G 218 (355)
+-++||+.... . .....+..+++||.+......+..
T Consensus 317 NLIpyNp~~~~~y~~~~~~~~~~F~~~L~~~gi~~tiR~~~G~d 360 (373)
T PRK14459 317 NLIPLNPTPGSKWTASPPEVEREFVRRLRAAGVPCTVRDTRGQE 360 (373)
T ss_pred EEEccCCCCCCCCcCCCHHHHHHHHHHHHHCCCeEEeeCCCCcC
Confidence 88999986531 1 145777788999999998777643
No 172
>COG2102 Predicted ATPases of PP-loop superfamily [General function prediction only]
Probab=27.84 E-value=1.7e+02 Score=26.13 Aligned_cols=119 Identities=18% Similarity=0.253 Sum_probs=70.4
Q ss_pred HHHHHHHcCCCcccEEEeccCC-CCCCHHHHHHHHHHHHHcCccceeec----CCCCHHHHHHHhhcCCceeeccccccc
Q 018482 116 CEASLKRLDVEYIDLYYQHRVD-TTVPIEDTMGELKKLVDEGKIKYIGL----SEASPDTIRRAHAVHPVTALQMEWSLW 190 (355)
Q Consensus 116 ~~~sL~~L~~d~iDl~~lh~p~-~~~~~~~~~~~L~~l~~~Gkir~iGv----S~~~~~~l~~~~~~~~~~~~q~~~n~~ 190 (355)
++..-+-+|+. ++..---. .+..+++..++|+.|+ +..|.. |.+....++.+++..++.++-. +|
T Consensus 51 ~~~~Ae~~gi~---l~~~~~~g~~e~eve~L~~~l~~l~----~d~iv~GaI~s~yqk~rve~lc~~lGl~~~~P---LW 120 (223)
T COG2102 51 AELQAEAMGIP---LVTFDTSGEEEREVEELKEALRRLK----VDGIVAGAIASEYQKERVERLCEELGLKVYAP---LW 120 (223)
T ss_pred HHHHHHhcCCc---eEEEecCccchhhHHHHHHHHHhCc----ccEEEEchhhhHHHHHHHHHHHHHhCCEEeec---cc
Confidence 34444556655 33322221 2234567777777777 444443 4455567778887766555332 33
Q ss_pred cchhhhchHHHHHHhCCcEEecccCCcccCC---CCCCCCCCCCccccccCCCCCCcchhhhHHHHHHHHHHHHHcCCCH
Q 018482 191 TRAIEDEIVPLCRELGIGIVPYSPLGRGFFG---GKASVESLPASSILTWHPRFSGENIDKNKILYLRLQKLAEKHECNP 267 (355)
Q Consensus 191 ~~~~~~~~~~~~~~~gi~v~a~spl~~G~L~---g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~la~~~~~s~ 267 (355)
.+ ...+++...-+.|...+.-++-+-|+-. |+ . -..+..+.+..++++||+.+
T Consensus 121 g~-d~~ell~e~~~~Gf~~~Iv~Vsa~gL~~~~lGr----------------~-------i~~~~~e~l~~l~~~ygi~~ 176 (223)
T COG2102 121 GR-DPEELLEEMVEAGFEAIIVAVSAEGLDESWLGR----------------R-------IDREFLEELKSLNRRYGIHP 176 (223)
T ss_pred CC-CHHHHHHHHHHcCCeEEEEEEeccCCChHHhCC----------------c-------cCHHHHHHHHHHHHhcCCCc
Confidence 33 3467888888888887777777766621 11 0 11245578889999999865
Q ss_pred H
Q 018482 268 A 268 (355)
Q Consensus 268 ~ 268 (355)
+
T Consensus 177 ~ 177 (223)
T COG2102 177 A 177 (223)
T ss_pred c
Confidence 3
No 173
>KOG0023 consensus Alcohol dehydrogenase, class V [Secondary metabolites biosynthesis, transport and catabolism]
Probab=27.79 E-value=2.1e+02 Score=27.31 Aligned_cols=148 Identities=19% Similarity=0.194 Sum_probs=78.5
Q ss_pred CCCCceecCCCCcccccceeccccCCCCCCCCCCHHHHHHHHHHHHHcCCC--eEeCccCcCCCChhHHHHHHHHhcCCC
Q 018482 7 IKIPRVKLGGQGFEVSKLGFGCMGLTGMYNDPVPDEVGISIIKHAFDQGIT--FFDTADVYGPNNANELLVGKALKQFPR 84 (355)
Q Consensus 7 ~~m~~~~lg~tg~~vs~lglGt~~~~~~~~~~~~~~~~~~~l~~A~~~Gi~--~~DtA~~Yg~~g~sE~~lg~~L~~~~R 84 (355)
.+|++..++ .|..|-..|+|. +|. -.++.|-..|.+ .||+++ ...|+ +++...-
T Consensus 172 spLk~~g~~-pG~~vgI~GlGG--LGh------------~aVq~AKAMG~rV~vis~~~-----~kkee----a~~~LGA 227 (360)
T KOG0023|consen 172 SPLKRSGLG-PGKWVGIVGLGG--LGH------------MAVQYAKAMGMRVTVISTSS-----KKKEE----AIKSLGA 227 (360)
T ss_pred ehhHHcCCC-CCcEEEEecCcc--cch------------HHHHHHHHhCcEEEEEeCCc-----hhHHH----HHHhcCc
Confidence 367777776 788888888887 543 334555555655 677653 22443 3443333
Q ss_pred CCEEEEeeccccccCCCCcccCCCHHHHHHHHHHHHHHcCCCcccEEEeccCCCCCCHHHHHHHHHHHHHcCccceeecC
Q 018482 85 EKVQLATKFGVVKFDVSGLVINGTPEYVRACCEASLKRLDVEYIDLYYQHRVDTTVPIEDTMGELKKLVDEGKIKYIGLS 164 (355)
Q Consensus 85 ~~~~i~tK~~~~~~~~~~~~~~~s~~~i~~~~~~sL~~L~~d~iDl~~lh~p~~~~~~~~~~~~L~~l~~~Gkir~iGvS 164 (355)
+.+++++| +++ +.+++..++.- + +|..... .....-..++-++..|++-.+|+-
T Consensus 228 d~fv~~~~---------------d~d-~~~~~~~~~dg-~--------~~~v~~~-a~~~~~~~~~~lk~~Gt~V~vg~p 281 (360)
T KOG0023|consen 228 DVFVDSTE---------------DPD-IMKAIMKTTDG-G--------IDTVSNL-AEHALEPLLGLLKVNGTLVLVGLP 281 (360)
T ss_pred ceeEEecC---------------CHH-HHHHHHHhhcC-c--------ceeeeec-cccchHHHHHHhhcCCEEEEEeCc
Confidence 44555554 123 34444444332 1 2222211 111233456677889999999997
Q ss_pred CCCHHHHHHHhhcCC--ceeeccccccc-cchhhhchHHHHHHhCCcE
Q 018482 165 EASPDTIRRAHAVHP--VTALQMEWSLW-TRAIEDEIVPLCRELGIGI 209 (355)
Q Consensus 165 ~~~~~~l~~~~~~~~--~~~~q~~~n~~-~~~~~~~~~~~~~~~gi~v 209 (355)
..... +...+ +-...+..+.. .+...++.++||.+++|..
T Consensus 282 ~~~~~-----~~~~~lil~~~~I~GS~vG~~ket~E~Ldf~a~~~ik~ 324 (360)
T KOG0023|consen 282 EKPLK-----LDTFPLILGRKSIKGSIVGSRKETQEALDFVARGLIKS 324 (360)
T ss_pred CCccc-----ccchhhhcccEEEEeeccccHHHHHHHHHHHHcCCCcC
Confidence 64221 11111 11222333322 2333489999999998764
No 174
>TIGR02082 metH 5-methyltetrahydrofolate--homocysteine methyltransferase. S-methyltransferase (MetE, EC 2.1.1.14, the cobalamin-independent methionine synthase) and betaine-homocysteine methyltransferase.
Probab=27.73 E-value=9.5e+02 Score=27.34 Aligned_cols=106 Identities=10% Similarity=0.027 Sum_probs=62.6
Q ss_pred CHHHHHHHHHHHHHHcCCCcccEEEeccCCCCCCHHHHHHHHHHHHHc-Ccc--ceeecCCCCHHHHHHHhhc--CCcee
Q 018482 108 TPEYVRACCEASLKRLDVEYIDLYYQHRVDTTVPIEDTMGELKKLVDE-GKI--KYIGLSEASPDTIRRAHAV--HPVTA 182 (355)
Q Consensus 108 s~~~i~~~~~~sL~~L~~d~iDl~~lh~p~~~~~~~~~~~~L~~l~~~-Gki--r~iGvS~~~~~~l~~~~~~--~~~~~ 182 (355)
+.+.+.+...+. ..-|-+.||+-.= ....+-++.+..+-.+.+. -.+ --|-+-+++++.++.+++. .+..+
T Consensus 366 d~~~a~~~A~~q-ve~GA~iIDVn~~---~~~vd~~eem~rvv~~i~~~~~~~~vPlsIDS~~~~v~eaaLk~~~G~~II 441 (1178)
T TIGR02082 366 DYDEALDIAKQQ-VENGAQILDINVD---YGMLDGVAAMKRFLNLLASEPDISTVPLMLDSSEWAVLEAGLKCIQGKCIV 441 (1178)
T ss_pred CHHHHHHHHHHH-HHCCCCEEEECCC---CCCCCHHHHHHHHHHHHHhccCCCCCeEEEeCCcHHHHHHHHHhcCCCCEE
Confidence 344454444444 3567889998752 1223444555554444443 212 3477788899999999987 44444
Q ss_pred eccccccccchhhhchHHHHHHhCCcEEecccCCcc
Q 018482 183 LQMEWSLWTRAIEDEIVPLCRELGIGIVPYSPLGRG 218 (355)
Q Consensus 183 ~q~~~n~~~~~~~~~~~~~~~~~gi~v~a~spl~~G 218 (355)
+-+..--..... ..+++.|+++|..++++.--..|
T Consensus 442 NsIs~~~g~~~~-~~~~~l~~~yga~vV~m~~de~G 476 (1178)
T TIGR02082 442 NSISLKDGEERF-IETAKLIKEYGAAVVVMAFDEEG 476 (1178)
T ss_pred EeCCCCCCCccH-HHHHHHHHHhCCCEEEEecCCCC
Confidence 444332122222 37899999999999998533333
No 175
>PRK08195 4-hyroxy-2-oxovalerate/4-hydroxy-2-oxopentanoic acid aldolase,; Validated
Probab=27.66 E-value=5.2e+02 Score=24.56 Aligned_cols=105 Identities=17% Similarity=0.175 Sum_probs=56.8
Q ss_pred CCCHHHHHHHHHHHHHHcCCCcccEEEeccCC---C--CCCHHHHHHHHHHHHHc-CccceeecCC---CCHHHHHHHhh
Q 018482 106 NGTPEYVRACCEASLKRLDVEYIDLYYQHRVD---T--TVPIEDTMGELKKLVDE-GKIKYIGLSE---ASPDTIRRAHA 176 (355)
Q Consensus 106 ~~s~~~i~~~~~~sL~~L~~d~iDl~~lh~p~---~--~~~~~~~~~~L~~l~~~-Gkir~iGvS~---~~~~~l~~~~~ 176 (355)
.++.+.+. .+-+.|.+.|+++|.+-+..... . ......-++.++.+.+. ...+...+.. .+.+.++.+.+
T Consensus 21 ~f~~~~~~-~i~~~L~~aGv~~IEvg~~~g~g~~s~~~g~~~~~~~e~i~~~~~~~~~~~~~~ll~pg~~~~~dl~~a~~ 99 (337)
T PRK08195 21 QYTLEQVR-AIARALDAAGVPVIEVTHGDGLGGSSFNYGFGAHTDEEYIEAAAEVVKQAKIAALLLPGIGTVDDLKMAYD 99 (337)
T ss_pred ccCHHHHH-HHHHHHHHcCCCEEEeecCCCCCCccccCCCCCCCHHHHHHHHHHhCCCCEEEEEeccCcccHHHHHHHHH
Confidence 45666554 45556999999999886432110 0 00001124444444322 3344444332 24667766665
Q ss_pred cCCceeeccccccccchhhhchHHHHHHhCCcEEec
Q 018482 177 VHPVTALQMEWSLWTRAIEDEIVPLCRELGIGIVPY 212 (355)
Q Consensus 177 ~~~~~~~q~~~n~~~~~~~~~~~~~~~~~gi~v~a~ 212 (355)
. +++.+.+..+.-.-..-...+++++++|..+...
T Consensus 100 ~-gvd~iri~~~~~e~~~~~~~i~~ak~~G~~v~~~ 134 (337)
T PRK08195 100 A-GVRVVRVATHCTEADVSEQHIGLARELGMDTVGF 134 (337)
T ss_pred c-CCCEEEEEEecchHHHHHHHHHHHHHCCCeEEEE
Confidence 4 4566555444333223377889999999877664
No 176
>KOG0173 consensus 20S proteasome, regulatory subunit beta type PSMB7/PSMB10/PUP1 [Posttranslational modification, protein turnover, chaperones]
Probab=27.65 E-value=53 Score=29.71 Aligned_cols=37 Identities=19% Similarity=0.338 Sum_probs=28.6
Q ss_pred ccccceeccccCC------CCCCCCCCHHHHHHHHHHHHHcCC
Q 018482 20 EVSKLGFGCMGLT------GMYNDPVPDEVGISIIKHAFDQGI 56 (355)
Q Consensus 20 ~vs~lglGt~~~~------~~~~~~~~~~~~~~~l~~A~~~Gi 56 (355)
+.|-..+|..++. ..|..+++++++.+++..|+++||
T Consensus 158 ~~Pf~alGSGslaAmsvlEsr~k~dlt~eea~~Lv~eAi~AGi 200 (271)
T KOG0173|consen 158 KLPFTALGSGSLAAMSVLESRWKPDLTKEEAIKLVCEAIAAGI 200 (271)
T ss_pred ccceeeeccchHHHHHHHHHhcCcccCHHHHHHHHHHHHHhhh
Confidence 4455556655554 358878899999999999999998
No 177
>PRK09856 fructoselysine 3-epimerase; Provisional
Probab=27.42 E-value=3.1e+02 Score=24.73 Aligned_cols=52 Identities=13% Similarity=0.130 Sum_probs=31.8
Q ss_pred CHHHHHHHhhcCCceeecccccc-------ccchhhhchHHHHHHhCCcEEecccCCcc
Q 018482 167 SPDTIRRAHAVHPVTALQMEWSL-------WTRAIEDEIVPLCRELGIGIVPYSPLGRG 218 (355)
Q Consensus 167 ~~~~l~~~~~~~~~~~~q~~~n~-------~~~~~~~~~~~~~~~~gi~v~a~spl~~G 218 (355)
+..+.-+.++..+++.+++..+. +.......+.+.++++|+.+.++.|...+
T Consensus 14 ~l~~~l~~~~~~G~~~vEl~~~~~~~~~~~~~~~~~~~l~~~~~~~gl~v~s~~~~~~~ 72 (275)
T PRK09856 14 PIEHAFRDASELGYDGIEIWGGRPHAFAPDLKAGGIKQIKALAQTYQMPIIGYTPETNG 72 (275)
T ss_pred CHHHHHHHHHHcCCCEEEEccCCccccccccCchHHHHHHHHHHHcCCeEEEecCcccC
Confidence 34444455555677777763210 11112267888899999999998876543
No 178
>cd07939 DRE_TIM_NifV Streptomyces rubellomurinus FrbC and related proteins, catalytic TIM barrel domain. FrbC (NifV) of Streptomyces rubellomurinus catalyzes the condensation of acetyl-CoA and alpha-ketoglutarate to form homocitrate and CoA, a reaction similar to one catalyzed by homocitrate synthase. The gene encoding FrbC is one of several genes required for the biosynthesis of FR900098, a potent antimalarial antibiotic. This protein is also required for assembly of the nitrogenase MoFe complex but its exact role is unknown. This family also includes the NifV proteins of Heliobacterium chlorum and Gluconacetobacter diazotrophicus, which appear to be orthologous to FrbC. This family belongs to the DRE-TIM metallolyase superfamily. DRE-TIM metallolyases include 2-isopropylmalate synthase (IPMS), alpha-isopropylmalate synthase (LeuA), 3-hydroxy-3-methylglutaryl-CoA lyase, homocitrate synthase, citramalate synthase, 4-hydroxy-2-oxovalerate aldolase, re-citrate synthase, transcarbox
Probab=27.03 E-value=4.7e+02 Score=23.59 Aligned_cols=97 Identities=16% Similarity=0.144 Sum_probs=58.8
Q ss_pred CCHHHHHHHHHHHHHHcCCCcccEEEeccCCCCCCHHHHHHHHHHHHHcC-ccceeecCCCCHHHHHHHhhcCCceeecc
Q 018482 107 GTPEYVRACCEASLKRLDVEYIDLYYQHRVDTTVPIEDTMGELKKLVDEG-KIKYIGLSEASPDTIRRAHAVHPVTALQM 185 (355)
Q Consensus 107 ~s~~~i~~~~~~sL~~L~~d~iDl~~lh~p~~~~~~~~~~~~L~~l~~~G-kir~iGvS~~~~~~l~~~~~~~~~~~~q~ 185 (355)
++.+. +..+-+.|.++|+++|.+-+ |.. -+.-|+.++.+.+.+ .++..+.+..+.+.++.+.+. +++.+.+
T Consensus 17 ~~~~~-k~~i~~~L~~~Gv~~iE~g~---p~~---~~~~~e~~~~l~~~~~~~~~~~~~r~~~~~v~~a~~~-g~~~i~i 88 (259)
T cd07939 17 FSREE-KLAIARALDEAGVDEIEVGI---PAM---GEEEREAIRAIVALGLPARLIVWCRAVKEDIEAALRC-GVTAVHI 88 (259)
T ss_pred CCHHH-HHHHHHHHHHcCCCEEEEec---CCC---CHHHHHHHHHHHhcCCCCEEEEeccCCHHHHHHHHhC-CcCEEEE
Confidence 45554 45556669999999998863 321 123356667776643 477777776778888777664 3344444
Q ss_pred ccccccc--------hh------hhchHHHHHHhCCcEEe
Q 018482 186 EWSLWTR--------AI------EDEIVPLCRELGIGIVP 211 (355)
Q Consensus 186 ~~n~~~~--------~~------~~~~~~~~~~~gi~v~a 211 (355)
..+.-.. .. -.+.+++|+++|+.+..
T Consensus 89 ~~~~s~~~~~~~~~~~~~~~~~~~~~~i~~a~~~G~~v~~ 128 (259)
T cd07939 89 SIPVSDIHLAHKLGKDRAWVLDQLRRLVGRAKDRGLFVSV 128 (259)
T ss_pred EEecCHHHHHHHhCCCHHHHHHHHHHHHHHHHHCCCeEEE
Confidence 2221111 00 14678899999987653
No 179
>PF01408 GFO_IDH_MocA: Oxidoreductase family, NAD-binding Rossmann fold; InterPro: IPR000683 This group of enzymes utilise NADP or NAD, and is known as the GFO/IDH/MOCA family in UniProtKB/Swiss-Prot. GFO is a glucose--fructose oxidoreductase, which converts D-glucose and D-fructose into D-gluconolactone and D-glucitol in the sorbitol-gluconate pathway. MOCA is a rhizopine catabolism protein which may catalyse the NADH-dependent dehydrogenase reaction involved in rhizopine catabolism. Other proteins belonging to this family include Gal80, a negative regulator for the expression of lactose and galactose metabolic genes; and several hypothetical proteins from yeast, Escherichia coli and Bacillus subtilis. The oxidoreductase, N-terminal domain is almost always associated with the oxidoreductase, C-terminal domain (see IPR004104 from INTERPRO).; GO: 0016491 oxidoreductase activity; PDB: 1LC0_A 1LC3_A 1GCU_A 3IP3_E 3CEA_C 3EVN_A 3NTQ_A 3NTR_B 3NT5_A 3MZ0_A ....
Probab=27.02 E-value=2.9e+02 Score=21.09 Aligned_cols=42 Identities=21% Similarity=0.135 Sum_probs=27.9
Q ss_pred HHhhcCCceeeccccccccchhhhchHHHHHHhCCcEEecccCCc
Q 018482 173 RAHAVHPVTALQMEWSLWTRAIEDEIVPLCRELGIGIVPYSPLGR 217 (355)
Q Consensus 173 ~~~~~~~~~~~q~~~n~~~~~~~~~~~~~~~~~gi~v~a~spl~~ 217 (355)
++++...++.+-+.-.... -.++...|-++|+.++.=.|++.
T Consensus 56 ~ll~~~~~D~V~I~tp~~~---h~~~~~~~l~~g~~v~~EKP~~~ 97 (120)
T PF01408_consen 56 ELLADEDVDAVIIATPPSS---HAEIAKKALEAGKHVLVEKPLAL 97 (120)
T ss_dssp HHHHHTTESEEEEESSGGG---HHHHHHHHHHTTSEEEEESSSSS
T ss_pred HHHHhhcCCEEEEecCCcc---hHHHHHHHHHcCCEEEEEcCCcC
Confidence 3444445566555333322 25788889999999999999973
No 180
>COG2089 SpsE Sialic acid synthase [Cell envelope biogenesis, outer membrane]
Probab=26.88 E-value=5.6e+02 Score=24.43 Aligned_cols=114 Identities=21% Similarity=0.243 Sum_probs=68.7
Q ss_pred CCHHHHHHHHHHHHHcCCCeEeCccCcCCCChhHH--------------------HHHHHHhcCCCCCEEEEeecccccc
Q 018482 39 VPDEVGISIIKHAFDQGITFFDTADVYGPNNANEL--------------------LVGKALKQFPREKVQLATKFGVVKF 98 (355)
Q Consensus 39 ~~~~~~~~~l~~A~~~Gi~~~DtA~~Yg~~g~sE~--------------------~lg~~L~~~~R~~~~i~tK~~~~~~ 98 (355)
++.+.-.++.++|-+.|+-+|=|--.+.. .+. +|-...+ ..+.+.++|=+.
T Consensus 87 ~p~e~~~~Lke~a~~~Gi~~~SSPfd~~s---vd~l~~~~~~ayKIaS~E~~~~plik~iA~--~~kPiIlSTGma---- 157 (347)
T COG2089 87 TPLEWHAQLKEYARKRGIIFFSSPFDLTA---VDLLESLNPPAYKIASGEINDLPLIKYIAK--KGKPIILSTGMA---- 157 (347)
T ss_pred CCHHHHHHHHHHHHHcCeEEEecCCCHHH---HHHHHhcCCCeEEecCccccChHHHHHHHh--cCCCEEEEcccc----
Confidence 57778889999999999988877644432 221 1111111 223455555443
Q ss_pred CCCCcccCCCHHHHHHHHHHHHHHcCCCcccEEEeccCCCC-CCHHHH-HHHHHHHHHcCccceeecCCCCHHHHHHH
Q 018482 99 DVSGLVINGTPEYVRACCEASLKRLDVEYIDLYYQHRVDTT-VPIEDT-MGELKKLVDEGKIKYIGLSEASPDTIRRA 174 (355)
Q Consensus 99 ~~~~~~~~~s~~~i~~~~~~sL~~L~~d~iDl~~lh~p~~~-~~~~~~-~~~L~~l~~~Gkir~iGvS~~~~~~l~~~ 174 (355)
+-+.+.++++...++ | ..|+.++|+.... .+.+++ +..|..|.+.= ---||+|.|+..-+..+
T Consensus 158 ---------~~~ei~~av~~~r~~-g--~~~i~LLhC~s~YPap~ed~NL~~i~~l~~~F-n~~vGlSDHT~g~~a~l 222 (347)
T COG2089 158 ---------TIEEIEEAVAILREN-G--NPDIALLHCTSAYPAPFEDVNLKAIPKLAEAF-NAIVGLSDHTLGILAPL 222 (347)
T ss_pred ---------cHHHHHHHHHHHHhc-C--CCCeEEEEecCCCCCCHHHhhHHHHHHHHHHh-CCccccccCccchhHHH
Confidence 345677776654444 3 2399999998654 345543 55555555542 44799999988744433
No 181
>cd01965 Nitrogenase_MoFe_beta_like Nitrogenase_MoFe_beta_like: Nitrogenase MoFe protein, beta subunit_like. The nitrogenase enzyme catalyzes the ATP-dependent reduction of dinitrogen (N2) to ammonia. This group contains the beta subunits of component 1 of the three known genetically distinct types of nitrogenase systems: a molybdenum-dependent nitrogenase (Mo-nitrogenase), a vanadium-dependent nitrogenase (V-nitrogenase), and an iron-only nitrogenase (Fe-nitrogenase). These nitrogenase systems consist of component 1 (MoFe protein, VFe protein or, FeFe protein respectively) and, component 2 (Fe protein). The most widespread and best characterized of these systems is the Mo-nitrogenase. MoFe is an alpha2beta2 tetramer, the alternative nitrogenases are alpha2beta2delta2 hexamers having alpha and beta subunits similar to the alpha and beta subunits of MoFe. For MoFe, each alphabeta pair contains one P-cluster (at the alphabeta interface) and, one molecule of iron molybdenum cofactor (Fe
Probab=26.81 E-value=6.1e+02 Score=24.82 Aligned_cols=104 Identities=11% Similarity=0.066 Sum_probs=54.8
Q ss_pred HHHHHHHHhc----CCCCCEEEEeeccccccCCCCcccCCCHHHHHHHHHHHHHHcC-CCcccEEEeccCCCCCC----H
Q 018482 72 ELLVGKALKQ----FPREKVQLATKFGVVKFDVSGLVINGTPEYVRACCEASLKRLD-VEYIDLYYQHRVDTTVP----I 142 (355)
Q Consensus 72 E~~lg~~L~~----~~R~~~~i~tK~~~~~~~~~~~~~~~s~~~i~~~~~~sL~~L~-~d~iDl~~lh~p~~~~~----~ 142 (355)
|+.|-+++++ .+.+-++|.|-+..... -++++.-+++.-++.. -..+.++.++.|..... .
T Consensus 66 ~~~L~~~i~~~~~~~~p~~I~v~~tC~~~li----------GdDi~~v~~~~~~~~~~~~~~~vi~v~tpgf~g~~~~G~ 135 (428)
T cd01965 66 EDNLIEALKNLLSRYKPDVIGVLTTCLTETI----------GDDVAGFIKEFRAEGPEPADFPVVYASTPSFKGSHETGY 135 (428)
T ss_pred HHHHHHHHHHHHHhcCCCEEEEECCcchhhc----------CCCHHHHHHHHHhhccCCCCCeEEEeeCCCCCCcHHHHH
Confidence 5666666665 33444666666543321 1223333333222211 02356888888865432 2
Q ss_pred HHHHHHHHHH-------HHcCccceeecCCC---CHHHHHHHhhcCCceeecc
Q 018482 143 EDTMGELKKL-------VDEGKIKYIGLSEA---SPDTIRRAHAVHPVTALQM 185 (355)
Q Consensus 143 ~~~~~~L~~l-------~~~Gkir~iGvS~~---~~~~l~~~~~~~~~~~~q~ 185 (355)
+.++++|-+. ++.++|--||-++. +.+++.++++..++.++.+
T Consensus 136 ~~a~~al~~~~~~~~~~~~~~~VNlig~~~~~~~d~~el~~lL~~~Gl~v~~~ 188 (428)
T cd01965 136 DNAVKAIIEQLAKPSEVKKNGKVNLLPGFPLTPGDVREIKRILEAFGLEPIIL 188 (428)
T ss_pred HHHHHHHHHHHhcccCCCCCCeEEEECCCCCCccCHHHHHHHHHHcCCCEEEe
Confidence 3344444432 23456888876654 4678888888876655543
No 182
>COG0626 MetC Cystathionine beta-lyases/cystathionine gamma-synthases [Amino acid transport and metabolism]
Probab=26.62 E-value=2.4e+02 Score=27.68 Aligned_cols=80 Identities=10% Similarity=0.085 Sum_probs=52.3
Q ss_pred HHHHHHHHHHHHHcCccceeecCCCCHHHHHHHhh--cCCceeeccccccccchhh-hchHHHHHHhCCcEEecccCCcc
Q 018482 142 IEDTMGELKKLVDEGKIKYIGLSEASPDTIRRAHA--VHPVTALQMEWSLWTRAIE-DEIVPLCRELGIGIVPYSPLGRG 218 (355)
Q Consensus 142 ~~~~~~~L~~l~~~Gkir~iGvS~~~~~~l~~~~~--~~~~~~~q~~~n~~~~~~~-~~~~~~~~~~gi~v~a~spl~~G 218 (355)
...++..++.+.+..-|....+...+.+.+.+++. ..+...+..+-|++.+-.+ ..+.+.|+++|+.++.-+.|+.+
T Consensus 112 YG~t~~~~~~~l~~~gi~~~~~d~~~~~~~~~~~~~~~tk~v~lEtPsNP~l~v~DI~~i~~~A~~~g~~vvVDNTfatP 191 (396)
T COG0626 112 YGGTYRLFEKILQKFGVEVTFVDPGDDEALEAAIKEPNTKLVFLETPSNPLLEVPDIPAIARLAKAYGALVVVDNTFATP 191 (396)
T ss_pred cchHHHHHHHHHHhcCeEEEEECCCChHHHHHHhcccCceEEEEeCCCCcccccccHHHHHHHHHhcCCEEEEECCcccc
Confidence 34556666666665555555555555545554443 3566777777887776433 77888888888888888887776
Q ss_pred cCC
Q 018482 219 FFG 221 (355)
Q Consensus 219 ~L~ 221 (355)
.+.
T Consensus 192 ~~q 194 (396)
T COG0626 192 VLQ 194 (396)
T ss_pred ccc
Confidence 654
No 183
>PRK07328 histidinol-phosphatase; Provisional
Probab=26.35 E-value=4.9e+02 Score=23.59 Aligned_cols=107 Identities=14% Similarity=0.125 Sum_probs=57.5
Q ss_pred HHHHHHHHHHHcCCCeEeCccCcCC-----------CChhHHHHHHHHhc-------CCCCCEEEEeeccccccCCCCcc
Q 018482 43 VGISIIKHAFDQGITFFDTADVYGP-----------NNANELLVGKALKQ-------FPREKVQLATKFGVVKFDVSGLV 104 (355)
Q Consensus 43 ~~~~~l~~A~~~Gi~~~DtA~~Yg~-----------~g~sE~~lg~~L~~-------~~R~~~~i~tK~~~~~~~~~~~~ 104 (355)
..++++++|++.|+..+=.+++.-. -+....-+-..+++ ..+-++++..-++..
T Consensus 19 ~~ee~v~~A~~~Gl~~i~~TdH~~~~~~~~~~~~~~~~~~~~~~~~y~~~i~~l~~~y~~i~Il~GiE~~~~-------- 90 (269)
T PRK07328 19 TPEEYVQAARRAGLKEIGFTDHLPMYFLPPEWRDPGLAMRLEELPFYVSEVERLRARFPDLYVRLGIEADYH-------- 90 (269)
T ss_pred CHHHHHHHHHHCCCCEEEEecCCCCCCcCcccccccccccHHHHHHHHHHHHHHHHHcCCCeEEEEEEeccc--------
Confidence 4688999999999998766655221 00011122223322 111133333333221
Q ss_pred cCCCHHHHHHHHHHHHHHcCCCcccEEEeccCCCC-------------CCHHHHH----HHHHHHHHcCccceeec
Q 018482 105 INGTPEYVRACCEASLKRLDVEYIDLYYQHRVDTT-------------VPIEDTM----GELKKLVDEGKIKYIGL 163 (355)
Q Consensus 105 ~~~s~~~i~~~~~~sL~~L~~d~iDl~~lh~p~~~-------------~~~~~~~----~~L~~l~~~Gkir~iGv 163 (355)
+ .....+++.|++...||+ |.-+|+.+.. .+.++++ +.+.++.+.|.+..||=
T Consensus 91 ----~-~~~~~~~~~l~~~~~D~v-igSvH~~~~~~~~~~~~~~~~~~~~~~~~~~~Y~~~~~~~~~~~~~dvlgH 160 (269)
T PRK07328 91 ----P-GTEEFLERLLEAYPFDYV-IGSVHYLGAWGFDNPDFVAEYEERDLDELYRRYFALVEQAARSGLFDIIGH 160 (269)
T ss_pred ----C-CcHHHHHHHHHhCCCCeE-EEEEeecCCcCCCChhHHHHHhcCCHHHHHHHHHHHHHHHHHcCCCCEeeC
Confidence 1 134555667777777877 8888986421 1222333 35677777888766654
No 184
>COG0502 BioB Biotin synthase and related enzymes [Coenzyme metabolism]
Probab=26.19 E-value=4.5e+02 Score=25.14 Aligned_cols=133 Identities=20% Similarity=0.237 Sum_probs=76.9
Q ss_pred CCHHHHHHHHHHHHHcC-CCeEeCccCcCCCChhHHHHHHHHhcCC-CCCEEEEeeccccccCCCCcccCCCHHHHHHHH
Q 018482 39 VPDEVGISIIKHAFDQG-ITFFDTADVYGPNNANELLVGKALKQFP-REKVQLATKFGVVKFDVSGLVINGTPEYVRACC 116 (355)
Q Consensus 39 ~~~~~~~~~l~~A~~~G-i~~~DtA~~Yg~~g~sE~~lg~~L~~~~-R~~~~i~tK~~~~~~~~~~~~~~~s~~~i~~~~ 116 (355)
++.++....-+.|-+.| .++...|..++. ++.=..+-++++..+ --.+-+.--+|- +...-
T Consensus 84 ~~~eeIle~Ak~ak~~Ga~r~c~~aagr~~-~~~~~~i~~~v~~Vk~~~~le~c~slG~----------------l~~eq 146 (335)
T COG0502 84 MEVEEILEAAKKAKAAGATRFCMGAAGRGP-GRDMEEVVEAIKAVKEELGLEVCASLGM----------------LTEEQ 146 (335)
T ss_pred CCHHHHHHHHHHHHHcCCceEEEEEeccCC-CccHHHHHHHHHHHHHhcCcHHhhccCC----------------CCHHH
Confidence 45666666667778999 889998888863 434444455555422 122333333331 22233
Q ss_pred HHHHHHcCCCcccEEEeccCCC----------CCCHHHHHHHHHHHHHcCccc----eeecCCCCHHHHHHHhhcCCce-
Q 018482 117 EASLKRLDVEYIDLYYQHRVDT----------TVPIEDTMGELKKLVDEGKIK----YIGLSEASPDTIRRAHAVHPVT- 181 (355)
Q Consensus 117 ~~sL~~L~~d~iDl~~lh~p~~----------~~~~~~~~~~L~~l~~~Gkir----~iGvS~~~~~~l~~~~~~~~~~- 181 (355)
.+-|+.-|+++ +-|+.+. ...+++-++.|+.+++.|.=- -+|+.....+++..+.......
T Consensus 147 ~~~L~~aGvd~----ynhNLeTs~~~y~~I~tt~t~edR~~tl~~vk~~Gi~vcsGgI~GlGEs~eDri~~l~~L~~l~~ 222 (335)
T COG0502 147 AEKLADAGVDR----YNHNLETSPEFYENIITTRTYEDRLNTLENVREAGIEVCSGGIVGLGETVEDRAELLLELANLPT 222 (335)
T ss_pred HHHHHHcChhh----eecccccCHHHHcccCCCCCHHHHHHHHHHHHHcCCccccceEecCCCCHHHHHHHHHHHHhCCC
Confidence 45577778775 5565543 234789999999999998722 2355554455555544432222
Q ss_pred eeccccccccc
Q 018482 182 ALQMEWSLWTR 192 (355)
Q Consensus 182 ~~q~~~n~~~~ 192 (355)
.-.++.|.++.
T Consensus 223 pdsVPIn~l~P 233 (335)
T COG0502 223 PDSVPINFLNP 233 (335)
T ss_pred CCeeeeeeecC
Confidence 44566666655
No 185
>cd03329 MR_like_4 Mandelate racemase (MR)-like subfamily of the enolase superfamily, subgroup 4. Enzymes of this subgroup share three conserved carboxylate ligands for the essential divalent metal ion (usually Mg2+), two aspartates and a glutamate, and conserved catalytic residues, a Lys-X-Lys motif and a conserved histidine-aspartate dyad. This subgroup's function is unknown.
Probab=26.12 E-value=5.8e+02 Score=24.36 Aligned_cols=151 Identities=9% Similarity=0.018 Sum_probs=84.7
Q ss_pred CHHHHHHHHHHHHHcCCCeEeCccCcCCCChhH--HHHHHHHhcCCCCCEEEEeeccccccCCCCcccCCCHHHHHHHHH
Q 018482 40 PDEVGISIIKHAFDQGITFFDTADVYGPNNANE--LLVGKALKQFPREKVQLATKFGVVKFDVSGLVINGTPEYVRACCE 117 (355)
Q Consensus 40 ~~~~~~~~l~~A~~~Gi~~~DtA~~Yg~~g~sE--~~lg~~L~~~~R~~~~i~tK~~~~~~~~~~~~~~~s~~~i~~~~~ 117 (355)
+.++..+.++.+.+.|++.|=.- .++. ..-+ .-.=+++++.--.++.|.-=.. ..++.+...
T Consensus 143 ~~~~~~~~a~~~~~~Gf~~~Kik-~~~~-~~~~~di~~i~~vR~~~G~~~~l~vDan----------~~~~~~~A~---- 206 (368)
T cd03329 143 SPEAYADFAEECKALGYRAIKLH-PWGP-GVVRRDLKACLAVREAVGPDMRLMHDGA----------HWYSRADAL---- 206 (368)
T ss_pred CHHHHHHHHHHHHHcCCCEEEEe-cCCc-hhHHHHHHHHHHHHHHhCCCCeEEEECC----------CCcCHHHHH----
Confidence 56777788888899999988652 1221 1011 1122233331112222221111 123444332
Q ss_pred HHHHHcCCCcccEEEeccCCCCCCHHHHHHHHHHHHHcCccc-eeecCCCC-HHHHHHHhhcCCceeeccccccccch-h
Q 018482 118 ASLKRLDVEYIDLYYQHRVDTTVPIEDTMGELKKLVDEGKIK-YIGLSEAS-PDTIRRAHAVHPVTALQMEWSLWTRA-I 194 (355)
Q Consensus 118 ~sL~~L~~d~iDl~~lh~p~~~~~~~~~~~~L~~l~~~Gkir-~iGvS~~~-~~~l~~~~~~~~~~~~q~~~n~~~~~-~ 194 (355)
+.+++|. .+++.++..|-. .. -++.+.+|++.-.+. ..|=+-++ ..+++.+++...++++|+..+..-.- .
T Consensus 207 ~~~~~l~--~~~l~~iEeP~~---~~-d~~~~~~l~~~~~ipIa~~E~~~~~~~~~~~~i~~~a~d~v~~d~~~~GGit~ 280 (368)
T cd03329 207 RLGRALE--ELGFFWYEDPLR---EA-SISSYRWLAEKLDIPILGTEHSRGALESRADWVLAGATDFLRADVNLVGGITG 280 (368)
T ss_pred HHHHHhh--hcCCCeEeCCCC---ch-hHHHHHHHHhcCCCCEEccCcccCcHHHHHHHHHhCCCCEEecCccccCCHHH
Confidence 2333332 234556665533 22 247777888875544 23445567 88899998888899999977654221 1
Q ss_pred hhchHHHHHHhCCcEEec
Q 018482 195 EDEIVPLCRELGIGIVPY 212 (355)
Q Consensus 195 ~~~~~~~~~~~gi~v~a~ 212 (355)
-..+...|+++|+.+...
T Consensus 281 ~~~ia~~a~~~gi~~~~h 298 (368)
T cd03329 281 AMKTAHLAEAFGLDVELH 298 (368)
T ss_pred HHHHHHHHHHcCCEEEEE
Confidence 268999999999998764
No 186
>COG0761 lytB 4-Hydroxy-3-methylbut-2-enyl diphosphate reductase IspH [Lipid metabolism]
Probab=26.02 E-value=2.2e+02 Score=26.48 Aligned_cols=120 Identities=17% Similarity=0.230 Sum_probs=71.1
Q ss_pred HHHHHHHHHH--HcCccceeecCCCCHHHHHHHhhc--CCceeeccc----cccccchhhhchHHHHHHhCCcEEecccC
Q 018482 144 DTMGELKKLV--DEGKIKYIGLSEASPDTIRRAHAV--HPVTALQME----WSLWTRAIEDEIVPLCRELGIGIVPYSPL 215 (355)
Q Consensus 144 ~~~~~L~~l~--~~Gkir~iGvS~~~~~~l~~~~~~--~~~~~~q~~----~n~~~~~~~~~~~~~~~~~gi~v~a~spl 215 (355)
+..+.++.|. ...++-++--.+.+.+...+..+. .++-.+|.+ ....++.-+..+.+.+.+-++-++.-++-
T Consensus 144 e~~~d~~~l~~~~~~~l~~~tQTTls~ddt~~Iv~~l~~r~p~~~~~~~~~ICyAT~nRQ~Avk~la~~~Dl~iVVG~~n 223 (294)
T COG0761 144 ESVEDVANLKVQLPDKLAFVTQTTLSVDDTAEIVAALKERFPKIEVPPFNDICYATQNRQDAVKELAPEVDLVIVVGSKN 223 (294)
T ss_pred ecHHHHHhcccCCcccEEEEeeeecCHHHHHHHHHHHHHhCccccCCcccccchhhhhHHHHHHHHhhcCCEEEEECCCC
Confidence 3444555553 222444444445555555544333 111112221 12233333466777777878777775555
Q ss_pred CcccCCCCCCCCCCCCccccccCCCCCCcchhhhHHHHHHHHHHHHHcCC------CHHHHHHHHHhhCCCCeeeecCCC
Q 018482 216 GRGFFGGKASVESLPASSILTWHPRFSGENIDKNKILYLRLQKLAEKHEC------NPAQLALAWILHQGDDVAPIPGTT 289 (355)
Q Consensus 216 ~~G~L~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~la~~~~~------s~~qlal~~~l~~~~v~~vIvG~~ 289 (355)
++.. .+|.++|+++|. ++.++=..|+-.... ..+--|+|
T Consensus 224 SSNs----------------------------------~rL~eiA~~~g~~aylId~~~ei~~~w~~~~~~-VGvTAGAS 268 (294)
T COG0761 224 SSNS----------------------------------NRLAEIAKRHGKPAYLIDDAEEIDPEWLKGVKT-VGVTAGAS 268 (294)
T ss_pred CccH----------------------------------HHHHHHHHHhCCCeEEeCChHhCCHHHhcCccE-EEEecCCC
Confidence 4211 478899999887 688999999988554 56668999
Q ss_pred CHHHHHHHH
Q 018482 290 KIKNLDDNI 298 (355)
Q Consensus 290 ~~~~l~~nl 298 (355)
.|+-|-+++
T Consensus 269 tPd~lV~~V 277 (294)
T COG0761 269 TPDWLVQEV 277 (294)
T ss_pred CCHHHHHHH
Confidence 999877764
No 187
>PRK14465 ribosomal RNA large subunit methyltransferase N; Provisional
Probab=26.02 E-value=3.9e+02 Score=25.62 Aligned_cols=90 Identities=13% Similarity=0.169 Sum_probs=0.0
Q ss_pred EEEeccCCCC-----------CCHHHHHHHHHHHHHcCc----cceeecCCCCH-----HHHHHHhhcCCceeecccccc
Q 018482 130 LYYQHRVDTT-----------VPIEDTMGELKKLVDEGK----IKYIGLSEASP-----DTIRRAHAVHPVTALQMEWSL 189 (355)
Q Consensus 130 l~~lh~p~~~-----------~~~~~~~~~L~~l~~~Gk----ir~iGvS~~~~-----~~l~~~~~~~~~~~~q~~~n~ 189 (355)
.+-||.|+.+ .+++++++++.++.++-+ ++|+=+.+.+. +.+.+++...+..++-++||.
T Consensus 215 aiSLhA~~~e~R~~l~Pi~~~~~le~ll~al~~~~~~~~r~v~ieyvLI~GvNDs~eda~~L~~ll~~l~~kVnLIPyN~ 294 (342)
T PRK14465 215 AISLNHPDPNGRLQIMDIEEKFPLEELLQAAKDFTRELKRRITFEYVMIPGVNMGRENANKLVKIARSLDCKINVIPLNT 294 (342)
T ss_pred EEEecCCChhhcceEeeccccCCHHHHHHHHHHHHHHcCCEEEEEEEEECCccCCHHHHHHHHHHHhhCCCcEEEEccCC
Q ss_pred ccchhh-------hchHHHHHHhCCcEEecccCCccc
Q 018482 190 WTRAIE-------DEIVPLCRELGIGIVPYSPLGRGF 219 (355)
Q Consensus 190 ~~~~~~-------~~~~~~~~~~gi~v~a~spl~~G~ 219 (355)
...... ....+..+++||.+......+..+
T Consensus 295 ~~~~~~~ps~e~i~~F~~~L~~~Gi~v~~R~~~G~di 331 (342)
T PRK14465 295 EFFGWRRPTDDEVAEFIMLLEPAGVPILNRRSPGKDI 331 (342)
T ss_pred CCCCCCCCCHHHHHHHHHHHHHCCCeEEEeCCCCcCh
No 188
>PF07994 NAD_binding_5: Myo-inositol-1-phosphate synthase; InterPro: IPR002587 1L-myo-Inositol-1-phosphate synthase (5.5.1.4 from EC) catalyzes the conversion of D-glucose 6-phosphate to 1L-myo-inositol-1-phosphate, the first committed step in the production of all inositol-containing compounds, including phospholipids, either directly or by salvage. The enzyme exists in a cytoplasmic form in a wide range of plants, animals, and fungi. It has also been detected in several bacteria and a chloroplast form is observed in alga and higher plants. Inositol phosphates play an important role in signal transduction. In Saccharomyces cerevisiae (Baker's yeast), the transcriptional regulation of the INO1 gene has been studied in detail [] and its expression is sensitive to the availability of phospholipid precursors as well as growth phase. The regulation of the structural gene encoding 1L-myo-inositol-1-phosphate synthase has also been analyzed at the transcriptional level in the aquatic angiosperm, Spirodela polyrrhiza (Giant duckweed) and the halophyte, Mesembryanthemum crystallinum (Common ice plant) [].; GO: 0004512 inositol-3-phosphate synthase activity, 0006021 inositol biosynthetic process, 0008654 phospholipid biosynthetic process; PDB: 1GR0_A 1P1K_B 1LA2_B 1RM0_B 1P1I_B 1JKF_A 1P1F_A 1P1J_B 1JKI_B 1P1H_A ....
Probab=25.98 E-value=4.9e+02 Score=24.38 Aligned_cols=145 Identities=21% Similarity=0.214 Sum_probs=80.7
Q ss_pred HHHHHHHHHHHHHHcCCCcccEEEeccCCCCC----CHHHHHHHHHHHHHcCccceeecCCCCHHHHHHHhh-cCCceee
Q 018482 109 PEYVRACCEASLKRLDVEYIDLYYQHRVDTTV----PIEDTMGELKKLVDEGKIKYIGLSEASPDTIRRAHA-VHPVTAL 183 (355)
Q Consensus 109 ~~~i~~~~~~sL~~L~~d~iDl~~lh~p~~~~----~~~~~~~~L~~l~~~Gkir~iGvS~~~~~~l~~~~~-~~~~~~~ 183 (355)
.+.+++.|.+-+++.|+|++=++.+-+-+... ....++++|++..+.+.-. + ++.++-..+. ..+..++
T Consensus 131 ~e~~~~DI~~f~~~~~~d~vVvvn~asTE~~~~~~~~~~~t~~~l~~al~~~~~~-~-----~aS~~YA~AAl~~g~~fv 204 (295)
T PF07994_consen 131 VEQIREDIRDFKKENGLDRVVVVNVASTERYIPVIPGVHDTLEALEKALDENDPE-I-----SASMLYAYAALEAGVPFV 204 (295)
T ss_dssp HHHHHHHHHHHHHHTT-SCEEEEE-SSCC-S---CCCCCSSHHHHHHHHHTT-TT-H-----HHHHHHHHHHHHTTEEEE
T ss_pred HHHHHHHHHHHHHHhCCCcEEEEECCCCCCCCCCCccccCCHHHHHHHhhcCCCc-C-----ChHHHHHHHHHHCCCCeE
Confidence 56788889999999998854444443333311 2345788888888865532 2 2333222111 2343333
Q ss_pred ccccccccchhhhchHHHHHHhCCcEEec---ccCCcccCCCCCCCCCCCCccccccCCCCCCcchhhhHHHHHHHHHHH
Q 018482 184 QMEWSLWTRAIEDEIVPLCRELGIGIVPY---SPLGRGFFGGKASVESLPASSILTWHPRFSGENIDKNKILYLRLQKLA 260 (355)
Q Consensus 184 q~~~n~~~~~~~~~~~~~~~~~gi~v~a~---spl~~G~L~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~la 260 (355)
...=+.... ...+.+.++++|+.+..- +|++. .....+-++.++|
T Consensus 205 N~tP~~~a~--~P~l~ela~~~gvpi~GdD~KT~lAA------------------------------plvlDLirl~~la 252 (295)
T PF07994_consen 205 NGTPSNIAD--DPALVELAEEKGVPIAGDDGKTPLAA------------------------------PLVLDLIRLAKLA 252 (295)
T ss_dssp E-SSSTTTT--SHHHHHHHHHHTEEEEESSBS-HHHH------------------------------HHHHHHHHHHHHH
T ss_pred eccCccccC--CHHHHHHHHHcCCCeecchHhhhhhh------------------------------HHHHHHHHHHHHH
Confidence 221111111 257899999999987642 12221 2233445788999
Q ss_pred HHcCCCHHHHHHHHHhhCCCCeeeecCCCCHHHH
Q 018482 261 EKHECNPAQLALAWILHQGDDVAPIPGTTKIKNL 294 (355)
Q Consensus 261 ~~~~~s~~qlal~~~l~~~~v~~vIvG~~~~~~l 294 (355)
.+.|..-.+-.++|.+..|. +=.|......+
T Consensus 253 ~r~g~~Gv~~~ls~ffK~P~---~~~g~~~~~~l 283 (295)
T PF07994_consen 253 LRRGMGGVQEWLSFFFKSPM---VPPGPPQEHDL 283 (295)
T ss_dssp HHTTS-EEHHHHHHHBSS-T-----TTSTT--HH
T ss_pred HHcCCCChhHHHHHHhcCCC---ccCCCCCCCcH
Confidence 99999888889999999985 23666666655
No 189
>COG0159 TrpA Tryptophan synthase alpha chain [Amino acid transport and metabolism]
Probab=25.91 E-value=5.3e+02 Score=23.77 Aligned_cols=29 Identities=10% Similarity=0.071 Sum_probs=16.9
Q ss_pred ceeeccccccccchhhhchHHHHHHhCCc
Q 018482 180 VTALQMEWSLWTRAIEDEIVPLCRELGIG 208 (355)
Q Consensus 180 ~~~~q~~~n~~~~~~~~~~~~~~~~~gi~ 208 (355)
+.+++.-||+..+.-.+..++.|++.|+-
T Consensus 96 Pivlm~Y~Npi~~~Gie~F~~~~~~~Gvd 124 (265)
T COG0159 96 PIVLMTYYNPIFNYGIEKFLRRAKEAGVD 124 (265)
T ss_pred CEEEEEeccHHHHhhHHHHHHHHHHcCCC
Confidence 56666667765543334556666666653
No 190
>TIGR00048 radical SAM enzyme, Cfr family. A Staphylococcus sciuri plasmid-borne member of this family, Cfr, has been identified as essential to transferrable resistance to chloramphenicol and florfenicol by an unknown mechanism. A 14-15 residue cluster with four perfectly conserved Cys residues suggests this protein may be an enzyme with an iron-sulfur cluster. The Cys cluster is part of the radical SAM domain, suggested to provide a general mechanism by which the Fe-S center cleaves S-adenosylmethionine to initiate radical-based catalysis. Members of this family lack apparent transmembrane domains.
Probab=25.69 E-value=3e+02 Score=26.47 Aligned_cols=90 Identities=12% Similarity=0.225 Sum_probs=55.2
Q ss_pred EEEeccCCCC-----------CCHHHHHHHHHHHHH-cCc---cceeecCC--CCHHHHHHH---hhcCCceeecccccc
Q 018482 130 LYYQHRVDTT-----------VPIEDTMGELKKLVD-EGK---IKYIGLSE--ASPDTIRRA---HAVHPVTALQMEWSL 189 (355)
Q Consensus 130 l~~lh~p~~~-----------~~~~~~~~~L~~l~~-~Gk---ir~iGvS~--~~~~~l~~~---~~~~~~~~~q~~~n~ 189 (355)
.+-||.++++ .+++++++++.++.+ .|+ |+++=+.. .+.+++..+ ++..++.++-++||.
T Consensus 218 aiSL~a~~~e~r~~l~p~~~~~~l~~ll~~l~~~~~~~g~~VtieyvLI~GvNDs~e~a~~La~llk~l~~~VnLIPynp 297 (355)
T TIGR00048 218 AISLHAPNDELRSSLMPINKKYNIETLLAAVRRYLNKTGRRVTFEYVLLDGVNDQVEHAEELAELLKGTKCKVNLIPWNP 297 (355)
T ss_pred EEEeCCCCHHHHHHhcCcccCCCHHHHHHHHHHHHHHhCCEEEEEEEEECCCCCCHHHHHHHHHHHhcCCCceEEEeccc
Confidence 4779998743 136788888887654 443 44443332 244554444 444556777788987
Q ss_pred ccch----hh----hchHHHHHHhCCcEEecccCCccc
Q 018482 190 WTRA----IE----DEIVPLCRELGIGIVPYSPLGRGF 219 (355)
Q Consensus 190 ~~~~----~~----~~~~~~~~~~gi~v~a~spl~~G~ 219 (355)
+... .. ....++.+++|+.+......+..+
T Consensus 298 ~~~~~~~~ps~e~i~~f~~~L~~~gi~v~iR~~~G~di 335 (355)
T TIGR00048 298 FPEADYERPSNEQIDRFAKTLMSYGFTVTIRKSRGDDI 335 (355)
T ss_pred CCCCCCCCCCHHHHHHHHHHHHHCCCeEEEeCCCCcch
Confidence 6531 11 345666778899999887776433
No 191
>PRK06740 histidinol-phosphatase; Validated
Probab=25.64 E-value=2.6e+02 Score=26.59 Aligned_cols=24 Identities=17% Similarity=0.095 Sum_probs=19.8
Q ss_pred HHHHHHHHHHHHHcCCCeEeCccC
Q 018482 41 DEVGISIIKHAFDQGITFFDTADV 64 (355)
Q Consensus 41 ~~~~~~~l~~A~~~Gi~~~DtA~~ 64 (355)
....+..+++|++.|+..|=-++|
T Consensus 60 ~~~~e~yv~~Ai~~G~~~ig~SdH 83 (331)
T PRK06740 60 TKWIDLYLEEALRKGIKEVGIVDH 83 (331)
T ss_pred cchHHHHHHHHHHCCCcEEEECCC
Confidence 345799999999999998876665
No 192
>cd03324 rTSbeta_L-fuconate_dehydratase Human rTS beta is encoded by the rTS gene which, through alternative RNA splicing, also encodes rTS alpha whose mRNA is complementary to thymidylate synthase mRNA. rTS beta expression is associated with the production of small molecules that appear to mediate the down-regulation of thymidylate synthase protein by a novel intercellular signaling mechanism. A member of this family, from Xanthomonas, has been characterized to be a L-fuconate dehydratase. rTS beta belongs to the enolase superfamily of enzymes, characterized by the presence of an enolate anion intermediate which is generated by abstraction of the alpha-proton of the carboxylate substrate by an active site residue and is stabilized by coordination to the essential Mg2+ ion.
Probab=25.56 E-value=6.5e+02 Score=24.71 Aligned_cols=151 Identities=11% Similarity=0.089 Sum_probs=84.6
Q ss_pred CHHHHHHHHHHHHHcCCCeEeCccCcCCCChhHHHHHHHHhcCCCCCEEEEeeccccccCCCCcccCCCHHHHHHHHHHH
Q 018482 40 PDEVGISIIKHAFDQGITFFDTADVYGPNNANELLVGKALKQFPREKVQLATKFGVVKFDVSGLVINGTPEYVRACCEAS 119 (355)
Q Consensus 40 ~~~~~~~~l~~A~~~Gi~~~DtA~~Yg~~g~sE~~lg~~L~~~~R~~~~i~tK~~~~~~~~~~~~~~~s~~~i~~~~~~s 119 (355)
+.++..+.++.+++.|++.|=.-- |.+...+.-.=+++++.-.+++.|..=.. ..++++... +.
T Consensus 196 ~~~~~~~~a~~~~~~Gf~~~KiKv--g~~~~~d~~~v~avRe~vG~~~~L~vDaN----------~~w~~~~A~----~~ 259 (415)
T cd03324 196 SDEKLRRLCKEALAQGFTHFKLKV--GADLEDDIRRCRLAREVIGPDNKLMIDAN----------QRWDVPEAI----EW 259 (415)
T ss_pred CHHHHHHHHHHHHHcCCCEEEEeC--CCCHHHHHHHHHHHHHhcCCCCeEEEECC----------CCCCHHHHH----HH
Confidence 456666777777889999865421 11011111122334432112222222111 124454433 33
Q ss_pred HHHcCCCcccEEEeccCCCCCCHHHHHHHHHHHHHcC----ccceeecCCCCHHHHHHHhhcCCceeeccccccccch-h
Q 018482 120 LKRLDVEYIDLYYQHRVDTTVPIEDTMGELKKLVDEG----KIKYIGLSEASPDTIRRAHAVHPVTALQMEWSLWTRA-I 194 (355)
Q Consensus 120 L~~L~~d~iDl~~lh~p~~~~~~~~~~~~L~~l~~~G----kir~iGvS~~~~~~l~~~~~~~~~~~~q~~~n~~~~~-~ 194 (355)
+++|. -+++.++..|-+. +-++.+.+|++.. .=-..|=|.++...+..+++...++++|+...-.-.- .
T Consensus 260 ~~~L~--~~~l~~iEEP~~~----~d~~~~~~L~~~~~~~~iPIa~gEs~~~~~~~~~ll~~~a~dil~~d~~~~GGit~ 333 (415)
T cd03324 260 VKQLA--EFKPWWIEEPTSP----DDILGHAAIRKALAPLPIGVATGEHCQNRVVFKQLLQAGAIDVVQIDSCRLGGVNE 333 (415)
T ss_pred HHHhh--ccCCCEEECCCCC----CcHHHHHHHHHhcccCCCceecCCccCCHHHHHHHHHcCCCCEEEeCccccCCHHH
Confidence 34442 2366677776432 2356666666653 2224466778889999999888899999876643221 1
Q ss_pred hhchHHHHHHhCCcEEec
Q 018482 195 EDEIVPLCRELGIGIVPY 212 (355)
Q Consensus 195 ~~~~~~~~~~~gi~v~a~ 212 (355)
...+...|+.+|+.+...
T Consensus 334 ~~kia~lA~a~gi~~~pH 351 (415)
T cd03324 334 NLAVLLMAAKFGVPVCPH 351 (415)
T ss_pred HHHHHHHHHHcCCeEEEc
Confidence 268899999999998765
No 193
>cd07944 DRE_TIM_HOA_like 4-hydroxy-2-oxovalerate aldolase-like, N-terminal catalytic TIM barrel domain. This family of bacterial enzymes is sequence-similar to 4-hydroxy-2-oxovalerate aldolase (HOA) but its exact function is unknown. This family includes the Bacteroides vulgatus Bvu_2661 protein and belongs to the DRE-TIM metallolyase superfamily. DRE-TIM metallolyases include 2-isopropylmalate synthase (IPMS), alpha-isopropylmalate synthase (LeuA), 3-hydroxy-3-methylglutaryl-CoA lyase, homocitrate synthase, citramalate synthase, 4-hydroxy-2-oxovalerate aldolase, re-citrate synthase, transcarboxylase 5S, pyruvate carboxylase, AksA, and FrbC. These members all share a conserved triose-phosphate isomerase (TIM) barrel domain consisting of a core beta(8)-alpha(8) motif with the eight parallel beta strands forming an enclosed barrel surrounded by eight alpha helices. The domain has a catalytic center containing a divalent cation-binding site formed by a cluster of invariant residues t
Probab=25.55 E-value=5.2e+02 Score=23.57 Aligned_cols=27 Identities=22% Similarity=0.250 Sum_probs=22.9
Q ss_pred CCCCCHHHHHHHHHHHHHcCCCeEeCc
Q 018482 36 NDPVPDEVGISIIKHAFDQGITFFDTA 62 (355)
Q Consensus 36 ~~~~~~~~~~~~l~~A~~~Gi~~~DtA 62 (355)
+..++.++..++.+..-++||..|+..
T Consensus 14 ~~~f~~~~~~~ia~~L~~~GVd~IEvG 40 (266)
T cd07944 14 NWDFGDEFVKAIYRALAAAGIDYVEIG 40 (266)
T ss_pred CccCCHHHHHHHHHHHHHCCCCEEEee
Confidence 334588999999999999999999987
No 194
>PRK01313 rnpA ribonuclease P; Reviewed
Probab=25.54 E-value=3.4e+02 Score=21.96 Aligned_cols=62 Identities=18% Similarity=0.200 Sum_probs=42.8
Q ss_pred CCCCEEEEeeccccccCCCCcccCCCHHHHHHHHHHHHHHcCC----CcccEEEeccCCCC-CCHHHHHHHHHHHHH
Q 018482 83 PREKVQLATKFGVVKFDVSGLVINGTPEYVRACCEASLKRLDV----EYIDLYYQHRVDTT-VPIEDTMGELKKLVD 154 (355)
Q Consensus 83 ~R~~~~i~tK~~~~~~~~~~~~~~~s~~~i~~~~~~sL~~L~~----d~iDl~~lh~p~~~-~~~~~~~~~L~~l~~ 154 (355)
.|=-+.|+-|+|. ...+..+++.+.++++.+.. ...|++++-.+... .+..++-+.|+.+.+
T Consensus 47 ~RvG~~VSKKvG~----------AV~RNRiKR~lRE~fR~~~~~~~~~g~DiVivar~~~~~~~~~~l~~~L~~~l~ 113 (129)
T PRK01313 47 PRVGFTVTKKNGN----------AVERNRIRRRLKEAVRLHAGFDMAPGTDYVIVARRDALNAPFSQLTEELSRRIE 113 (129)
T ss_pred cEEEEEEecccCc----------chHHHHHHHHHHHHHHHhchhccCCCceEEEEECcccccCCHHHHHHHHHHHHH
Confidence 3444556666553 25688899999999887743 55799999998643 456677777766554
No 195
>PF02679 ComA: (2R)-phospho-3-sulfolactate synthase (ComA); InterPro: IPR003830 Methanogenic archaea produce methane via the anaerobic reduction of acetate or single carbon compounds []. Coenzyme M (CoM; 2-mercaptoethanesulphonic acid) serves as the terminal methyl carrier for this process. Previously thought to be unique to methanogenic archaea, CoM has also been found in methylotrophic bacteria. Biosynthesis of CoM begins with the Michael addition of sulphite to phosphoenolpyruvate, forming 2-phospho-3-sulpholactate (PSL). This reaction is catalyzed by members of this family, PSL synthase (ComA) []. Subsequently, PSL is dephosphorylated by phosphosulpholactate phosphatase (ComB) to form 3-sulpholactate [], which is then converted to 3-sulphopyruvate by L-sulpholactate dehydrogenase (ComC; 1.1.1.272 from EC) []. Sulphopyruvate decarboxylase (ComDE; 4.1.1.79 from EC) converts 3-sulphopyruvate to sulphoacetaldehyde []. Reductive thiolation of sulphoacetaldehyde is the final step.; GO: 0019295 coenzyme M biosynthetic process; PDB: 1U83_A 1QWG_A.
Probab=25.53 E-value=1.9e+02 Score=26.30 Aligned_cols=98 Identities=16% Similarity=0.144 Sum_probs=55.1
Q ss_pred HHHHHHHHHHcCCCcccEEEeccCCCCCCHHHHHHHHHHHHH-cCccceeecC-------CCCHHHHHHHhhcCCceeec
Q 018482 113 RACCEASLKRLDVEYIDLYYQHRVDTTVPIEDTMGELKKLVD-EGKIKYIGLS-------EASPDTIRRAHAVHPVTALQ 184 (355)
Q Consensus 113 ~~~~~~sL~~L~~d~iDl~~lh~p~~~~~~~~~~~~L~~l~~-~Gkir~iGvS-------~~~~~~l~~~~~~~~~~~~q 184 (355)
.+.++..|+-.| +|||++=+-|=......+++++..-++.+ -|---+.|=. .-..++..+.++..+|+.+.
T Consensus 24 ~~~~~dlLe~ag-~yID~~K~g~Gt~~l~~~~~l~eki~l~~~~gV~v~~GGtl~E~a~~q~~~~~yl~~~k~lGf~~IE 102 (244)
T PF02679_consen 24 LRYLEDLLESAG-DYIDFLKFGWGTSALYPEEILKEKIDLAHSHGVYVYPGGTLFEVAYQQGKFDEYLEECKELGFDAIE 102 (244)
T ss_dssp HHHHHHHHHHHG-GG-SEEEE-TTGGGGSTCHHHHHHHHHHHCTT-EEEE-HHHHHHHHHTT-HHHHHHHHHHCT-SEEE
T ss_pred HHHHHHHHHHhh-hhccEEEecCceeeecCHHHHHHHHHHHHHcCCeEeCCcHHHHHHHhcChHHHHHHHHHHcCCCEEE
Confidence 566788888888 99999999987665545555555444444 4443333321 22334555556667888877
Q ss_pred cccccccchhh--hchHHHHHHhCCcEEe
Q 018482 185 MEWSLWTRAIE--DEIVPLCRELGIGIVP 211 (355)
Q Consensus 185 ~~~n~~~~~~~--~~~~~~~~~~gi~v~a 211 (355)
+.-....-..+ ..++..++++|..|+.
T Consensus 103 iSdGti~l~~~~r~~~I~~~~~~Gf~v~~ 131 (244)
T PF02679_consen 103 ISDGTIDLPEEERLRLIRKAKEEGFKVLS 131 (244)
T ss_dssp E--SSS---HHHHHHHHHHHCCTTSEEEE
T ss_pred ecCCceeCCHHHHHHHHHHHHHCCCEEee
Confidence 76554443322 5677777777777664
No 196
>smart00052 EAL Putative diguanylate phosphodiesterase. Putative diguanylate phosphodiesterase, present in a variety of bacteria.
Probab=25.47 E-value=3.8e+02 Score=23.17 Aligned_cols=99 Identities=18% Similarity=0.215 Sum_probs=57.6
Q ss_pred HHHHHHHHHHHHcCCCcccEEEeccCCC--CCCHHHHHHHHHHHHHcCccceeecCCCCH--HHHHHHhhcCCceeeccc
Q 018482 111 YVRACCEASLKRLDVEYIDLYYQHRVDT--TVPIEDTMGELKKLVDEGKIKYIGLSEASP--DTIRRAHAVHPVTALQME 186 (355)
Q Consensus 111 ~i~~~~~~sL~~L~~d~iDl~~lh~p~~--~~~~~~~~~~L~~l~~~Gkir~iGvS~~~~--~~l~~~~~~~~~~~~q~~ 186 (355)
.....+...++..+..- +-+.+--.+. ........+.++.|++.|- .+.+.+|.. ..+..+. ..+++.+-+.
T Consensus 100 ~~~~~l~~~l~~~~~~~-~~lvlei~e~~~~~~~~~~~~~i~~l~~~G~--~ialddfg~~~~~~~~l~-~l~~d~iKld 175 (241)
T smart00052 100 DLVPRVLELLEETGLPP-QRLELEITESVLLDDDESAVATLQRLRELGV--RIALDDFGTGYSSLSYLK-RLPVDLLKID 175 (241)
T ss_pred hHHHHHHHHHHHcCCCH-HHEEEEEeChhhhcChHHHHHHHHHHHHCCC--EEEEeCCCCcHHHHHHHH-hCCCCeEEEC
Confidence 34556667777766542 2222222221 1233455689999999998 677777643 2333333 3455665555
Q ss_pred cccccc--------hhhhchHHHHHHhCCcEEecc
Q 018482 187 WSLWTR--------AIEDEIVPLCRELGIGIVPYS 213 (355)
Q Consensus 187 ~n~~~~--------~~~~~~~~~~~~~gi~v~a~s 213 (355)
.++... ..-..+...|+..|+.+++-.
T Consensus 176 ~~~~~~~~~~~~~~~~l~~l~~~~~~~~~~via~g 210 (241)
T smart00052 176 KSFVRDLQTDPEDEAIVQSIIELAQKLGLQVVAEG 210 (241)
T ss_pred HHHHhhhccChhHHHHHHHHHHHHHHCCCeEEEec
Confidence 443321 122677889999999998853
No 197
>COG0145 HyuA N-methylhydantoinase A/acetone carboxylase, beta subunit [Amino acid transport and metabolism / Secondary metabolites biosynthesis, transport, and catabolism]
Probab=25.38 E-value=6.8e+02 Score=26.48 Aligned_cols=102 Identities=11% Similarity=0.042 Sum_probs=69.2
Q ss_pred CCHHHHHHHHHHHHHcCCCeEeCc--cCcCCCChhHHHHHHHHhcCCCCCEEEEe--eccccccCCCCc-----ccCC--
Q 018482 39 VPDEVGISIIKHAFDQGITFFDTA--DVYGPNNANELLVGKALKQFPREKVQLAT--KFGVVKFDVSGL-----VING-- 107 (355)
Q Consensus 39 ~~~~~~~~~l~~A~~~Gi~~~DtA--~~Yg~~g~sE~~lg~~L~~~~R~~~~i~t--K~~~~~~~~~~~-----~~~~-- 107 (355)
.|.++.++.++...+.|+.-|=.+ .+|-| ...|..+++.+++.. .++.|++ ++++........ +...
T Consensus 136 lD~~~v~~~~~~l~~~gv~siAVs~~~S~~N-P~HE~~v~eiire~~-~~i~V~~shev~p~~~~~eR~~TavlnA~L~p 213 (674)
T COG0145 136 LDEEEVREAAAALKAAGVEAIAVSSLFSYRN-PEHELRVAEIIREIG-PDIPVSLSHEVSPEIGEYERANTAVLNAYLSP 213 (674)
T ss_pred CCHHHHHHHHHHHHhCCCcEEEEEEecccCC-cHHHHHHHHHHHHhc-CCceEEechhcchhcCcccchhhheeeeeehH
Confidence 688999999999999999987755 46666 789999999999855 5666666 887643211110 0001
Q ss_pred CHHHHHHHHHHHHHHcCCCcccEEEeccCCCCCCHH
Q 018482 108 TPEYVRACCEASLKRLDVEYIDLYYQHRVDTTVPIE 143 (355)
Q Consensus 108 s~~~i~~~~~~sL~~L~~d~iDl~~lh~p~~~~~~~ 143 (355)
--....++++..|+.-|.. ..++++-+.....+.+
T Consensus 214 i~~~yl~~v~~~l~~~g~~-~~l~~m~sdGgl~~~~ 248 (674)
T COG0145 214 ILRRYLEAVKDALKERGIK-ARLMVMQSDGGLVSAE 248 (674)
T ss_pred HHHHHHHHHHHHHHhcCCC-ceeEEEecCCccccHH
Confidence 1244556667777777755 5888888875544443
No 198
>PLN02389 biotin synthase
Probab=25.19 E-value=6.4e+02 Score=24.48 Aligned_cols=102 Identities=16% Similarity=0.181 Sum_probs=57.7
Q ss_pred CCHHHHHHHHHHHHHcCCCeEeCccCc-CCCC--hhHHHHHHHHhcCCCCCEEEEeeccccccCCCCcccCCCHHHHHHH
Q 018482 39 VPDEVGISIIKHAFDQGITFFDTADVY-GPNN--ANELLVGKALKQFPREKVQLATKFGVVKFDVSGLVINGTPEYVRAC 115 (355)
Q Consensus 39 ~~~~~~~~~l~~A~~~Gi~~~DtA~~Y-g~~g--~sE~~lg~~L~~~~R~~~~i~tK~~~~~~~~~~~~~~~s~~~i~~~ 115 (355)
++.++..+.++.+.+.|++.|-....+ +..+ ..-+.+-+.++..+...+.|....|. +.+.
T Consensus 116 Ls~EeIl~~a~~~~~~G~~~~~ivts~rg~~~e~~~~e~i~eiir~ik~~~l~i~~s~G~----------------l~~E 179 (379)
T PLN02389 116 MSKDDVLEAAKRAKEAGSTRFCMGAAWRDTVGRKTNFNQILEYVKEIRGMGMEVCCTLGM----------------LEKE 179 (379)
T ss_pred CCHHHHHHHHHHHHHcCCCEEEEEecccCCCCChhHHHHHHHHHHHHhcCCcEEEECCCC----------------CCHH
Confidence 588899999999999999988543221 1101 12235555666544334555544332 1222
Q ss_pred HHHHHHHcCCCcccEEEecc-C----C--CCCCHHHHHHHHHHHHHcCc
Q 018482 116 CEASLKRLDVEYIDLYYQHR-V----D--TTVPIEDTMGELKKLVDEGK 157 (355)
Q Consensus 116 ~~~sL~~L~~d~iDl~~lh~-p----~--~~~~~~~~~~~L~~l~~~Gk 157 (355)
.-+.|+..|+|++-+-+ .. + . ....+++.++.++.+++.|.
T Consensus 180 ~l~~LkeAGld~~~~~L-eTs~~~y~~i~~~~s~e~rl~ti~~a~~~Gi 227 (379)
T PLN02389 180 QAAQLKEAGLTAYNHNL-DTSREYYPNVITTRSYDDRLETLEAVREAGI 227 (379)
T ss_pred HHHHHHHcCCCEEEeee-cCChHHhCCcCCCCCHHHHHHHHHHHHHcCC
Confidence 33445556777653321 21 1 0 11356788899999999985
No 199
>PF00697 PRAI: N-(5'phosphoribosyl)anthranilate (PRA) isomerase; InterPro: IPR001240 Indole-3-glycerol phosphate synthase (IGPS) (see IPR001468 from INTERPRO) catalyzes the fourth step in the biosynthesis of tryptophan, the ring closure of 1-(2-carboxy-phenylamino)-1-deoxyribulose into indol-3-glycerol-phosphate. In some bacteria, IGPS is a single chain enzyme. In others, such as Escherichia coli, it is the N-terminal domain of a bifunctional enzyme that also catalyzes N-(5-phosphoribosyl)anthranilate isomerase (PRAI) activity, the third step of tryptophan biosynthesis. In fungi, IGPS is the central domain of a trifunctional enzyme that contains a PRAI C-terminal domain and a glutamine amidotransferase (GATase) N-terminal domain (see IPR000991 from INTERPRO). Phosphoribosylanthranilate isomerase (PRAI) is monomeric and labile in most mesophilic microorganisms, but dimeric and stable in the hyperthermophile Thermotoga maritima (tPRAI) []. The comparison to the known 2.0 A structure of PRAI from Escherichia coli (ePRAI) shows that tPRAI has the complete TIM- or (beta alp ha)8-barrel fold, whereas helix alpha5 in ePRAI is replaced by a loop. The subunits of tPRAI associate via the N-terminal faces of their central beta-barrels. Two long, symmetry-related loops that protrude reciprocally into cavities of the other subunit provide for multiple hydrophobic interactions. Moreover, the side chains of the N-terminal methionines and the C-terminal leucines of both subunits are immobilized in a hydrophobic cluster, and the number of salt bridges is increased in tPRAI. These features appear to be mainly responsible for the high thermostability of tPRAI []. ; GO: 0004640 phosphoribosylanthranilate isomerase activity, 0006568 tryptophan metabolic process; PDB: 1V5X_A 1PII_A 1JCM_P 2KZH_A 1LBM_A 1DL3_A 1NSJ_A.
Probab=25.13 E-value=81 Score=27.41 Aligned_cols=68 Identities=15% Similarity=0.171 Sum_probs=42.2
Q ss_pred HHHHHcCCCcccEEEeccCCCCCCHHHHHHHHHHHHHcCccceeecCC-CCHHHHHHHhhcCCceeecccccc
Q 018482 118 ASLKRLDVEYIDLYYQHRVDTTVPIEDTMGELKKLVDEGKIKYIGLSE-ASPDTIRRAHAVHPVTALQMEWSL 189 (355)
Q Consensus 118 ~sL~~L~~d~iDl~~lh~p~~~~~~~~~~~~L~~l~~~Gkir~iGvS~-~~~~~l~~~~~~~~~~~~q~~~n~ 189 (355)
..+..+|.||+=+.+. |..... -..+...++.+.-..+.+||.. .+.+++.+.++..+++++|++-+-
T Consensus 13 ~~~~~~g~d~~Gfi~~--~~S~R~--v~~~~a~~l~~~~~~~~VgVf~~~~~~~I~~~~~~~~ld~vQLHG~e 81 (197)
T PF00697_consen 13 RLAAELGADYLGFIFY--PKSPRY--VSPDQARELVSAVPPKIVGVFVNQSPEEILEIVEELGLDVVQLHGDE 81 (197)
T ss_dssp HHHHHHTSSEEEEE----TTCTTB----HHHHHHHHCCSSSSEEEEESSS-HHHHHHHHHHCTESEEEE-SGG
T ss_pred HHHHHcCCCEEeeecC--CCCCCc--cCHHHHHHHHHhcCCCEEEEEcCCCHHHHHHHHHHcCCCEEEECCCC
Confidence 4567789998887643 432221 1234455555554445788864 477889898888999999985543
No 200
>cd08583 PI-PLCc_GDPD_SF_unchar1 Uncharacterized hypothetical proteins similar to the catalytic domains of Phosphoinositide-specific phospholipaseand Glycerophosphodiester phosphodiesterases. This subfamily corresponds to a group of uncharacterized hypothetical proteins similar to the catalytic domains of Phosphoinositide-specific phospholipase C (PI-PLC), and glycerophosphodiester phosphodiesterases (GP-GDE), and also sphingomyelinases D (SMases D) and similar proteins. They hydrolyze the 3'-5' phosphodiester bonds in different substrates, utilizing a similar mechanism of general base and acid catalysis involving two conserved histidine residues.
Probab=25.10 E-value=4.8e+02 Score=23.03 Aligned_cols=22 Identities=14% Similarity=0.431 Sum_probs=17.9
Q ss_pred CHHHHHHHHHHHHHcCCCeEeC
Q 018482 40 PDEVGISIIKHAFDQGITFFDT 61 (355)
Q Consensus 40 ~~~~~~~~l~~A~~~Gi~~~Dt 61 (355)
-.|.....++.|++.|+..|++
T Consensus 13 ~pENTl~Af~~A~~~G~d~iE~ 34 (237)
T cd08583 13 TYTNSLDAFEHNYKKGYRVFEV 34 (237)
T ss_pred CCccHHHHHHHHHHhCCCEEEE
Confidence 4577888889999999998764
No 201
>KOG2599 consensus Pyridoxal/pyridoxine/pyridoxamine kinase [Coenzyme transport and metabolism]
Probab=24.99 E-value=3.9e+02 Score=24.79 Aligned_cols=126 Identities=13% Similarity=0.119 Sum_probs=75.8
Q ss_pred CCCCCCHHHHHHHHHHHHHcCCCeEeCc-cCcCCCChhHHHHHHHHhcCC---CCCEEEEeeccccccCCCCcccCCCHH
Q 018482 35 YNDPVPDEVGISIIKHAFDQGITFFDTA-DVYGPNNANELLVGKALKQFP---REKVQLATKFGVVKFDVSGLVINGTPE 110 (355)
Q Consensus 35 ~~~~~~~~~~~~~l~~A~~~Gi~~~DtA-~~Yg~~g~sE~~lg~~L~~~~---R~~~~i~tK~~~~~~~~~~~~~~~s~~ 110 (355)
.|....++|..++++.-...-.+.+|.- ..|-.+...-+.++..+++.+ ..-++|.. +..++.+ .-+.++
T Consensus 58 kG~~~~~~eL~dL~egl~~nn~~~Y~~vLTGY~~n~~~l~~i~~iv~~lk~~np~~~wv~D---PVmGDnG---~lYV~e 131 (308)
T KOG2599|consen 58 KGQVLNEEELEDLYEGLLLNNLNKYDAVLTGYLPNVSFLQKIADIVKKLKKKNPNLTWVCD---PVMGDNG---RLYVPE 131 (308)
T ss_pred cccccCHHHHHHHHHHHhhccccccceeeeeccCChhHHHHHHHHHHHHHhcCCCeEEEeC---ccccCCc---cEeccH
Confidence 4666789999999998887666655521 135443567778888887632 22233332 2222221 234455
Q ss_pred HHHHHHHHHHHHcCCCcccEEEeccCCCC-------CCHHHHHHHHHHHHHcCccceeecCCCCHHHH
Q 018482 111 YVRACCEASLKRLDVEYIDLYYQHRVDTT-------VPIEDTMGELKKLVDEGKIKYIGLSEASPDTI 171 (355)
Q Consensus 111 ~i~~~~~~sL~~L~~d~iDl~~lh~p~~~-------~~~~~~~~~L~~l~~~Gkir~iGvS~~~~~~l 171 (355)
.+..--++.+-. -+|++.-..++.+ ...++.+++++.|.+.| |..+=|+++...+.
T Consensus 132 elipvYr~~i~~----ladiiTPNqFE~EiLtg~~I~t~eda~~a~~~lhq~~-v~~vVITS~~~~~~ 194 (308)
T KOG2599|consen 132 ELIPVYRDLIIP----LADIITPNQFEAEILTGMEIRTEEDAKRAVEKLHQKG-VKTVVITSFDLGEF 194 (308)
T ss_pred HHHHHHHHhhcc----hhhhcCCcchhhhhhcCCeeccHHHHHHHHHHHHHhC-CCEEEEEeeeeCCC
Confidence 555444444433 2455544333322 23478999999999999 99999988776553
No 202
>TIGR02080 O_succ_thio_ly O-succinylhomoserine (thiol)-lyase. This family consists of O-succinylhomoserine (thiol)-lyase, one of three different enzymes designated cystathionine gamma-synthase and involved in methionine biosynthesis. In all three cases, sulfur is added by transsulfuration from Cys to yield cystathionine rather than by a sulfhydrylation step that uses H2S directly and bypasses cystathionine.
Probab=24.72 E-value=6.3e+02 Score=24.30 Aligned_cols=86 Identities=16% Similarity=0.162 Sum_probs=51.2
Q ss_pred cEEEeccCCCCCCHHHHHHHHHHHHHcCccceeecCCCCHHHHHHHhhc-CCceeeccccccccchh-hhchHHHHHHhC
Q 018482 129 DLYYQHRVDTTVPIEDTMGELKKLVDEGKIKYIGLSEASPDTIRRAHAV-HPVTALQMEWSLWTRAI-EDEIVPLCRELG 206 (355)
Q Consensus 129 Dl~~lh~p~~~~~~~~~~~~L~~l~~~Gkir~iGvS~~~~~~l~~~~~~-~~~~~~q~~~n~~~~~~-~~~~~~~~~~~g 206 (355)
|-+.+-.|. ...++..+..+...+.+...-+...+.+.++++++. .+..++..+.|+.-.-. .+.+.+.|+++|
T Consensus 91 D~Vl~~~p~----y~~~~~~~~~~~~~~~~~v~~~d~~d~~~l~~ai~~~tklV~l~~p~NPtG~~~dl~~I~~la~~~g 166 (382)
T TIGR02080 91 DLLVAPHDC----YGGTYRLLNALAKKGCFRVLFVDQGDEQALRAALAQKPKLVLIETPSNPLLRVVDIAKICHLAKAVG 166 (382)
T ss_pred CEEEEcCCC----cHHHHHHHHHHHhhcCeEEEEECCCCHHHHHHhcCcCceEEEEECCCCCCCEecCHHHHHHHHHHcC
Confidence 555554442 233444555555555444444445577888777753 34455555666544322 267899999999
Q ss_pred CcEEecccCCcc
Q 018482 207 IGIVPYSPLGRG 218 (355)
Q Consensus 207 i~v~a~spl~~G 218 (355)
+.++.-..++.+
T Consensus 167 ~~vvvD~a~~~~ 178 (382)
T TIGR02080 167 AVVVVDNTFLSP 178 (382)
T ss_pred CEEEEECCCccc
Confidence 988876666544
No 203
>PF07476 MAAL_C: Methylaspartate ammonia-lyase C-terminus; InterPro: IPR022662 Methylaspartate ammonia-lyase 4.3.1.2 from EC catalyses the second step of fermentation of glutamate. It is a homodimer. This domain represents the C-terminal region of methylaspartate ammonia-lyase and contains a TIM barrel fold similar to the PF01188 from PFAM. This domain represents the catalytic domain and contains a metal binding site []. ; PDB: 1KKO_B 1KKR_A 3ZVI_A 1KD0_B 1KCZ_B 3ZVH_A.
Probab=24.71 E-value=2.2e+02 Score=25.63 Aligned_cols=101 Identities=17% Similarity=0.110 Sum_probs=54.7
Q ss_pred CCCHHHHHHHHHHHHHHcCCCcccEEEeccCCCCCCHHHHHHHHHHHHHc----CccceeecCCC--CHHHHHHHhhcCC
Q 018482 106 NGTPEYVRACCEASLKRLDVEYIDLYYQHRVDTTVPIEDTMGELKKLVDE----GKIKYIGLSEA--SPDTIRRAHAVHP 179 (355)
Q Consensus 106 ~~s~~~i~~~~~~sL~~L~~d~iDl~~lh~p~~~~~~~~~~~~L~~l~~~----Gkir~iGvS~~--~~~~l~~~~~~~~ 179 (355)
+.+++.+..-+.+.-+.-. .=-++|..|-.....++.+++|.+|++. |---.|=.-.| +.+.++.+.+...
T Consensus 85 ~~d~~~~adYl~~l~~aA~---P~~L~iEgP~d~g~r~~QI~~l~~Lr~~L~~~g~~v~iVADEWCNT~eDI~~F~da~A 161 (248)
T PF07476_consen 85 DNDPDRMADYLAELEEAAA---PFKLRIEGPMDAGSREAQIEALAELREELDRRGINVEIVADEWCNTLEDIREFADAKA 161 (248)
T ss_dssp TT-HHHHHHHHHHHHHHHT---TS-EEEE-SB--SSHHHHHHHHHHHHHHHHHCT--EEEEE-TT--SHHHHHHHHHTT-
T ss_pred CCCHHHHHHHHHHHHHhcC---CCeeeeeCCcCCCChHHHHHHHHHHHHHHHhcCCCCeEEeehhcCCHHHHHHHHhcCC
Confidence 3456666555555444443 2235677776555666666666555543 33222323333 6688888888888
Q ss_pred ceeeccccc---cccchhhhchHHHHHHhCCcEEe
Q 018482 180 VTALQMEWS---LWTRAIEDEIVPLCRELGIGIVP 211 (355)
Q Consensus 180 ~~~~q~~~n---~~~~~~~~~~~~~~~~~gi~v~a 211 (355)
-+.+|+..= -.+.. -+.+-+|+++|++.-.
T Consensus 162 ~dmVQIKtPDLGgi~nt--ieAvlyCk~~gvgaY~ 194 (248)
T PF07476_consen 162 ADMVQIKTPDLGGINNT--IEAVLYCKEHGVGAYL 194 (248)
T ss_dssp SSEEEE-GGGGSSTHHH--HHHHHHHHHTT-EEEE
T ss_pred cCEEEecCCCccchhhH--HHHHHHHHhcCCceee
Confidence 899998532 22221 4678899999998743
No 204
>PLN02321 2-isopropylmalate synthase
Probab=24.63 E-value=5.2e+02 Score=27.09 Aligned_cols=106 Identities=22% Similarity=0.220 Sum_probs=53.5
Q ss_pred CCHHHHHHHHHHHHHHcCCCcccEEE-eccCCCCCCHHHHHHHHHHHHHc-----Ccc-ceeecCCCCHHHHHHHhhcC-
Q 018482 107 GTPEYVRACCEASLKRLDVEYIDLYY-QHRVDTTVPIEDTMGELKKLVDE-----GKI-KYIGLSEASPDTIRRAHAVH- 178 (355)
Q Consensus 107 ~s~~~i~~~~~~sL~~L~~d~iDl~~-lh~p~~~~~~~~~~~~L~~l~~~-----Gki-r~iGvS~~~~~~l~~~~~~~- 178 (355)
++.+.- -.+-+.|.++|+++|.+-+ ..+|. + .+.++.+.+.... +.+ .-.+++-.....++.+++..
T Consensus 105 ~s~eeK-l~Ia~~L~~lGVd~IEvGfP~~Sp~---D-~e~vr~i~~~~~~~v~~~~~v~~i~a~~ra~~~dId~A~~al~ 179 (632)
T PLN02321 105 LTSKEK-LDIARQLAKLGVDIIEAGFPIASPD---D-LEAVKTIAKEVGNEVDEDGYVPVICGLSRCNKKDIDAAWEAVK 179 (632)
T ss_pred CCHHHH-HHHHHHHHHcCCCEEEEeCcCCCcc---H-HHHHHHHHHhcccCCCccccceeeeeehhccHHhHHHHHHHhc
Confidence 555544 4555669999999888854 33332 1 2234444332211 111 22344444555666555431
Q ss_pred --C--ceeecc-------ccccccchh-----hhchHHHHHHhCCcEEecccCCc
Q 018482 179 --P--VTALQM-------EWSLWTRAI-----EDEIVPLCRELGIGIVPYSPLGR 217 (355)
Q Consensus 179 --~--~~~~q~-------~~n~~~~~~-----~~~~~~~~~~~gi~v~a~spl~~ 217 (355)
+ ...+.+ ++++-.... -.+.+++|+++|...+.+++-..
T Consensus 180 ~a~~~~I~i~~stSd~h~~~~l~~t~ee~l~~~~~~V~~Ak~~G~~~v~fs~EDa 234 (632)
T PLN02321 180 HAKRPRIHTFIATSEIHMEHKLRKTPDEVVEIARDMVKYARSLGCEDVEFSPEDA 234 (632)
T ss_pred CCCCCEEEEEEcCCHHHHHHHhCCCHHHHHHHHHHHHHHHHHcCCceEEEecccC
Confidence 1 111222 222211111 16788899999987677777643
No 205
>PF01118 Semialdhyde_dh: Semialdehyde dehydrogenase, NAD binding domain; InterPro: IPR000534 The semialdehyde dehydrogenase family is found in N-acetyl-glutamine semialdehyde dehydrogenase (AgrC), which is involved in arginine biosynthesis, and aspartate-semialdehyde dehydrogenase [], an enzyme involved in the biosynthesis of various amino acids from aspartate. This family is also found in yeast and fungal Arg5,6 protein, which is cleaved into the enzymes N-acety-gamma-glutamyl-phosphate reductase and acetylglutamate kinase. These are also involved in arginine biosynthesis. All proteins in this entry contain a NAD binding region of semialdehyde dehydrogenase.; GO: 0016620 oxidoreductase activity, acting on the aldehyde or oxo group of donors, NAD or NADP as acceptor, 0051287 NAD binding, 0006520 cellular amino acid metabolic process, 0055114 oxidation-reduction process, 0005737 cytoplasm; PDB: 3Q0E_B 1MB4_A 3PZR_A 1MC4_A 3TZ6_A 3VOS_A 2CVO_B 2R00_C 2QZ9_A 2EP5_C ....
Probab=24.58 E-value=1e+02 Score=24.28 Aligned_cols=28 Identities=14% Similarity=0.290 Sum_probs=24.7
Q ss_pred CHHHHHHHHHHHHHcCCCeEeCccCcCC
Q 018482 40 PDEVGISIIKHAFDQGITFFDTADVYGP 67 (355)
Q Consensus 40 ~~~~~~~~l~~A~~~Gi~~~DtA~~Yg~ 67 (355)
+...+.+....+++.|++.||.+..|..
T Consensus 75 ~~~~~~~~~~~~~~~g~~ViD~s~~~R~ 102 (121)
T PF01118_consen 75 PHGASKELAPKLLKAGIKVIDLSGDFRL 102 (121)
T ss_dssp CHHHHHHHHHHHHHTTSEEEESSSTTTT
T ss_pred chhHHHHHHHHHhhCCcEEEeCCHHHhC
Confidence 6677889999999999999999999864
No 206
>TIGR02090 LEU1_arch isopropylmalate/citramalate/homocitrate synthases. Methanogens, then should and aparrently do contain all three of these enzymes. Unfortunately, phylogenetic trees do not resolve into three unambiguous clades, making assignment of function to particular genes problematic. Other archaea which lack a threonine dehydratase (mainly Euryarchaeota) should contain both a CimA and a LeuA gene. This is true of, for example, archaeoglobus fulgidis, but not for the Pyrococci which have none in this clade, but one in TIGR00973 and one in TIGRT00977 which may fulfill these roles. Other species which have only one hit to this model and lack threonine dehydratase are very likely LeuA enzymes.
Probab=24.39 E-value=6.4e+02 Score=24.20 Aligned_cols=26 Identities=12% Similarity=0.203 Sum_probs=22.0
Q ss_pred CCCHHHHHHHHHHHHHcCCCeEeCcc
Q 018482 38 PVPDEVGISIIKHAFDQGITFFDTAD 63 (355)
Q Consensus 38 ~~~~~~~~~~l~~A~~~Gi~~~DtA~ 63 (355)
.++.++..++++.--+.||..|+...
T Consensus 18 ~~s~~~k~~ia~~L~~~Gv~~IEvG~ 43 (363)
T TIGR02090 18 SLTVEQKVEIARKLDELGVDVIEAGF 43 (363)
T ss_pred CCCHHHHHHHHHHHHHcCCCEEEEeC
Confidence 35778889999999999999999763
No 207
>TIGR03217 4OH_2_O_val_ald 4-hydroxy-2-oxovalerate aldolase. Members of this protein family are 4-hydroxy-2-oxovalerate aldolase, also called 4-hydroxy-2-ketovalerate aldolase and 2-oxo-4-hydroxypentanoate aldolase. This enzyme, part of the pathway for the meta-cleavage of catechol, produces pyruvate and acetaldehyde. Acetaldehyde is then converted by acetaldehyde dehydrogenase (acylating) (DmpF; EC 1.2.1.10) to acetyl-CoA. The two enzymes are tightly associated.
Probab=24.24 E-value=6.2e+02 Score=24.03 Aligned_cols=109 Identities=17% Similarity=0.122 Sum_probs=0.0
Q ss_pred cccCCCHHHHHHHHHHHHHHcCCCcccEE--------EeccCCCCCCHHHHHHHHHHHHHcCccceeecCCCCHHHHHHH
Q 018482 103 LVINGTPEYVRACCEASLKRLDVEYIDLY--------YQHRVDTTVPIEDTMGELKKLVDEGKIKYIGLSEASPDTIRRA 174 (355)
Q Consensus 103 ~~~~~s~~~i~~~~~~sL~~L~~d~iDl~--------~lh~p~~~~~~~~~~~~L~~l~~~Gkir~iGvS~~~~~~l~~~ 174 (355)
..+.++.+.+.+-++. |.+.|+++|.+- ....-....+-.+.++.+.+..+.-++..+-+.......-.+.
T Consensus 17 ~~~~f~~~~~~~ia~~-Ld~aGV~~IEvg~g~gl~g~s~~~G~~~~~~~e~i~~~~~~~~~~~~~~ll~pg~~~~~dl~~ 95 (333)
T TIGR03217 17 IRHQFTIEQVRAIAAA-LDEAGVDAIEVTHGDGLGGSSFNYGFSAHTDLEYIEAAADVVKRAKVAVLLLPGIGTVHDLKA 95 (333)
T ss_pred CCCcCCHHHHHHHHHH-HHHcCCCEEEEecCCCCCCccccCCCCCCChHHHHHHHHHhCCCCEEEEEeccCccCHHHHHH
Q ss_pred hhcCCceeeccccccccchhhhchHHHHHHhCCcEEec
Q 018482 175 HAVHPVTALQMEWSLWTRAIEDEIVPLCRELGIGIVPY 212 (355)
Q Consensus 175 ~~~~~~~~~q~~~n~~~~~~~~~~~~~~~~~gi~v~a~ 212 (355)
....+++.+.+..+.-.-..-.+.++++++.|..+...
T Consensus 96 a~~~gvd~iri~~~~~e~d~~~~~i~~ak~~G~~v~~~ 133 (333)
T TIGR03217 96 AYDAGARTVRVATHCTEADVSEQHIGMARELGMDTVGF 133 (333)
T ss_pred HHHCCCCEEEEEeccchHHHHHHHHHHHHHcCCeEEEE
No 208
>COG0673 MviM Predicted dehydrogenases and related proteins [General function prediction only]
Probab=24.14 E-value=1.3e+02 Score=28.10 Aligned_cols=67 Identities=21% Similarity=0.142 Sum_probs=49.1
Q ss_pred HHHHHHHHHcCCCHHHHHHHHHhhCCCCeeeecCCCCHHHHHHHHhccC--------CC--CCHHHHHHHHhhcCCC
Q 018482 254 LRLQKLAEKHECNPAQLALAWILHQGDDVAPIPGTTKIKNLDDNIGSLR--------VK--LTNEDLDEISSVIPIN 320 (355)
Q Consensus 254 ~~l~~la~~~~~s~~qlal~~~l~~~~v~~vIvG~~~~~~l~~nl~a~~--------~~--Lt~ee~~~i~~~~~~~ 320 (355)
++..++++++++...=--+.=++..+.|+.|++.+.+..|.+-.++++. +| +|.+|.++|-++.++-
T Consensus 41 ~~a~~~a~~~~~~~~~~~~~~ll~~~~iD~V~Iatp~~~H~e~~~~AL~aGkhVl~EKPla~t~~ea~~l~~~a~~~ 117 (342)
T COG0673 41 ERAEAFAEEFGIAKAYTDLEELLADPDIDAVYIATPNALHAELALAALEAGKHVLCEKPLALTLEEAEELVELARKA 117 (342)
T ss_pred HHHHHHHHHcCCCcccCCHHHHhcCCCCCEEEEcCCChhhHHHHHHHHhcCCEEEEcCCCCCCHHHHHHHHHHHHHc
Confidence 3577889999986111125557888888999999999888888877763 45 4788888887777754
No 209
>PRK09490 metH B12-dependent methionine synthase; Provisional
Probab=24.02 E-value=1.1e+03 Score=26.92 Aligned_cols=171 Identities=13% Similarity=0.081 Sum_probs=89.1
Q ss_pred CHHHHHHHHHHHHHcC-CCeEeCccCcCCCChhHHHHHHHHhcC-CCC-----CEEEEeeccccccC--------CCCcc
Q 018482 40 PDEVGISIIKHAFDQG-ITFFDTADVYGPNNANELLVGKALKQF-PRE-----KVQLATKFGVVKFD--------VSGLV 104 (355)
Q Consensus 40 ~~~~~~~~l~~A~~~G-i~~~DtA~~Yg~~g~sE~~lg~~L~~~-~R~-----~~~i~tK~~~~~~~--------~~~~~ 104 (355)
++++..+.+...++.| +|.|=-+---+ ..-=+.+.++++.. +|. ...+++-.-..... +.+..
T Consensus 290 tPe~~a~~~~~~~~~G~v~IIGGCCGTt--PeHI~ala~~l~~~~p~~~~~~~~~~~~S~~~~~~~~~~~~~~~IGER~N 367 (1229)
T PRK09490 290 TPEEMAAQIGEFAESGFLNIVGGCCGTT--PEHIAAIAEAVAGLPPRKLPEIPVACRLSGLEPLNIDDDSLFVNVGERTN 367 (1229)
T ss_pred CHHHHHHHHHHHHHcCCCCEEEecCCCC--HHHHHHHHHHHhcCCCCCCCCcCcceeeecceEEeecCCCcccccccccc
Confidence 6677788888888888 89887321111 11223445556542 222 11122221111100 01111
Q ss_pred -----------cCCCHHHHHHHHHHHHHHcCCCcccEEEeccCCC-CCCHHHHHHHHHHHHHcC-cc--ceeecCCCCHH
Q 018482 105 -----------INGTPEYVRACCEASLKRLDVEYIDLYYQHRVDT-TVPIEDTMGELKKLVDEG-KI--KYIGLSEASPD 169 (355)
Q Consensus 105 -----------~~~s~~~i~~~~~~sL~~L~~d~iDl~~lh~p~~-~~~~~~~~~~L~~l~~~G-ki--r~iGvS~~~~~ 169 (355)
...+.+.+.+..++.. .-|-+.||+- ++. ..+-++.+..+-.+++.- .+ --|-+-+++++
T Consensus 368 ~~G~k~~~~~i~~~d~~~al~~A~~qv-e~GA~iIDVn----~g~~~id~~eem~rvv~~i~~~~~~~~vPlsIDS~~~~ 442 (1229)
T PRK09490 368 VTGSAKFARLIKEEDYDEALDVARQQV-ENGAQIIDIN----MDEGMLDSEAAMVRFLNLIASEPDIARVPIMIDSSKWE 442 (1229)
T ss_pred hhccHHHHHHHHcCCHHHHHHHHHHHH-HCCCCEEEEC----CCCCCCCHHHHHHHHHHHHHhhhccCCceEEEeCCcHH
Confidence 1123344444444443 5578899985 332 234445554444444421 11 23777888999
Q ss_pred HHHHHhhc--CCceeeccccccccchhhhchHHHHHHhCCcEEecccCCcc
Q 018482 170 TIRRAHAV--HPVTALQMEWSLWTRAIEDEIVPLCRELGIGIVPYSPLGRG 218 (355)
Q Consensus 170 ~l~~~~~~--~~~~~~q~~~n~~~~~~~~~~~~~~~~~gi~v~a~spl~~G 218 (355)
.++.+++. .+..++-+..--..... ..+++.|+++|..+++..--..|
T Consensus 443 ViEaaLk~~~G~~IINSIs~~~~~~~~-~~~~~l~~kyga~vV~m~~de~G 492 (1229)
T PRK09490 443 VIEAGLKCIQGKGIVNSISLKEGEEKF-IEHARLVRRYGAAVVVMAFDEQG 492 (1229)
T ss_pred HHHHHHhhcCCCCEEEeCCCCCCCccH-HHHHHHHHHhCCCEEEEecCCCC
Confidence 99999987 44444444332121122 36899999999999998543333
No 210
>PRK03031 rnpA ribonuclease P; Reviewed
Probab=23.88 E-value=3.7e+02 Score=21.31 Aligned_cols=51 Identities=18% Similarity=0.128 Sum_probs=38.1
Q ss_pred CCHHHHHHHHHHHHHHcCC---CcccEEEeccCCCC-CCHHHHHHHHHHHHHc-Cc
Q 018482 107 GTPEYVRACCEASLKRLDV---EYIDLYYQHRVDTT-VPIEDTMGELKKLVDE-GK 157 (355)
Q Consensus 107 ~s~~~i~~~~~~sL~~L~~---d~iDl~~lh~p~~~-~~~~~~~~~L~~l~~~-Gk 157 (355)
..+..+++.+.+.++.+.- ...|++++-.+... .+..++.+.|..|.+. |.
T Consensus 62 V~RNriKR~lRe~~R~~~~~l~~g~diVvi~r~~~~~~~~~~l~~~l~~ll~k~~~ 117 (122)
T PRK03031 62 VVRNRIKRQIRAALRQLLPRIAPGWDLVIIVKPTAAECNYEQFLQELEQLLIQAEI 117 (122)
T ss_pred hhhhHHHHHHHHHHHHhhhccCCCceEEEEECCCcccCCHHHHHHHHHHHHHHccC
Confidence 5688888888888887642 35799999988754 4677888888776664 43
No 211
>PRK12558 glutamyl-tRNA synthetase; Provisional
Probab=23.73 E-value=2.2e+02 Score=28.40 Aligned_cols=59 Identities=15% Similarity=0.240 Sum_probs=40.6
Q ss_pred CCHHHHHHHHHHHHHHcCCCcccEEEeccCCCCCCHHHHHHHHHHHHHcCccceeecCCCCHHHHHH
Q 018482 107 GTPEYVRACCEASLKRLDVEYIDLYYQHRVDTTVPIEDTMGELKKLVDEGKIKYIGLSEASPDTIRR 173 (355)
Q Consensus 107 ~s~~~i~~~~~~sL~~L~~d~iDl~~lh~p~~~~~~~~~~~~L~~l~~~Gkir~iGvS~~~~~~l~~ 173 (355)
.+.+...+.+.+.|+.||+++ |-+ .......+..-+.+++|+++|++ |.+.|+ .++++.
T Consensus 48 Rs~~~~~~~I~e~L~wLGI~~-De~----y~QSer~~~y~~~~e~L~e~G~A-Y~C~Ct--~eel~~ 106 (445)
T PRK12558 48 RSKQEYADAIAEDLKWLGINW-DRT----FRQSDRFDRYDEAAEKLKAAGRL-YPCYET--PEELEL 106 (445)
T ss_pred cchHHHHHHHHHHHHHcCCCC-Ccc----ccHHHHHHHHHHHHHHHHHCCCE-EEecCc--hHHHHH
Confidence 456889999999999999974 742 11112234556888999999995 666654 555543
No 212
>PRK05414 urocanate hydratase; Provisional
Probab=23.69 E-value=2.3e+02 Score=28.64 Aligned_cols=115 Identities=17% Similarity=0.172 Sum_probs=76.9
Q ss_pred HHHHHcCCCeEe--CccCcCC-------CChhHHHHHHHHhc---CCCCCEEEEeeccccccCCC---------CcccCC
Q 018482 49 KHAFDQGITFFD--TADVYGP-------NNANELLVGKALKQ---FPREKVQLATKFGVVKFDVS---------GLVING 107 (355)
Q Consensus 49 ~~A~~~Gi~~~D--tA~~Yg~-------~g~sE~~lg~~L~~---~~R~~~~i~tK~~~~~~~~~---------~~~~~~ 107 (355)
...-+.|+.-+- ||-+|.- -|.-|.++..+-+. ..+.++|+++-+|....... ....+.
T Consensus 119 ~~l~~~Gl~mYGQMTAGsw~YIG~QGIvqGTyeT~~~a~rk~f~g~L~G~~~lTaGLGGMgGAQPlA~~mag~v~i~vEv 198 (556)
T PRK05414 119 NELEAKGLTMYGQMTAGSWIYIGSQGIVQGTYETFAEAARQHFGGDLAGRLVLTAGLGGMGGAQPLAATMAGAVCLAVEV 198 (556)
T ss_pred HHHHHcccccccCccccceeEEcCceeeecHHHHHHHHHHHhcCCCCceeEEEEecCCccccccHHHHHhcCceEEEEEE
Confidence 445567776554 5554421 15667666555444 24678999988886543210 011223
Q ss_pred CHHHHHHHHHHHHHHcCCCcccEEEeccCCCCCCHHHHHHHHHHHHHcCccceeecCCCCHHHHHHHhhc
Q 018482 108 TPEYVRACCEASLKRLDVEYIDLYYQHRVDTTVPIEDTMGELKKLVDEGKIKYIGLSEASPDTIRRAHAV 177 (355)
Q Consensus 108 s~~~i~~~~~~sL~~L~~d~iDl~~lh~p~~~~~~~~~~~~L~~l~~~Gkir~iGvS~~~~~~l~~~~~~ 177 (355)
++..| -+|+.+.|+|.+. .+++++++..++.+++|+...||+-..-++.+.++.+.
T Consensus 199 d~~ri-------~kR~~~gyld~~~-------~~Ldeal~~~~~a~~~~~~~SIg~~GNaadv~~~l~~~ 254 (556)
T PRK05414 199 DESRI-------DKRLRTGYLDEKA-------DDLDEALALAEEAKAAGEPLSIGLLGNAADVLPELVRR 254 (556)
T ss_pred CHHHH-------HHHHhCCcceeEc-------CCHHHHHHHHHHHHHcCCceEEEEeccHHHHHHHHHHc
Confidence 44444 4677788888653 46899999999999999999999998888888888776
No 213
>TIGR01228 hutU urocanate hydratase. This model represents the second of four enzymes involved in the degradation of histidine to glutamate.
Probab=23.65 E-value=2.3e+02 Score=28.54 Aligned_cols=141 Identities=16% Similarity=0.160 Sum_probs=87.4
Q ss_pred CCCcccccceeccccCCCCCCCCCCHHHHHHHHHHHHHcCCCeEe--CccCcCC-------CChhHHHHHHHHhc---CC
Q 018482 16 GQGFEVSKLGFGCMGLTGMYNDPVPDEVGISIIKHAFDQGITFFD--TADVYGP-------NNANELLVGKALKQ---FP 83 (355)
Q Consensus 16 ~tg~~vs~lglGt~~~~~~~~~~~~~~~~~~~l~~A~~~Gi~~~D--tA~~Yg~-------~g~sE~~lg~~L~~---~~ 83 (355)
+|...-|++.+--..+=..|.+ .++ .....+.|+.-+- ||-+|.- -|.-|.++..+-+. ..
T Consensus 84 ~th~~APRVliaNs~lVp~wa~---~e~----f~~l~~~Gl~mYGQMTAGsw~YIG~QGIvqGTyeT~~~aark~f~~~L 156 (545)
T TIGR01228 84 KTHENAPRVLIANSNLVPHWAD---WEH----FHELEAKGLMMYGQMTAGSWIYIGTQGILQGTYETFAELARQHFGGSL 156 (545)
T ss_pred cCCCCCCeEEEEcCccccCCCC---HHH----HHHHHHcccccccCccccceEEEcCcceeecHHHHHHHHHHHhcCCCC
Confidence 4555556665533332112432 233 3445567776554 5554411 15667766555443 24
Q ss_pred CCCEEEEeeccccccCCC---------CcccCCCHHHHHHHHHHHHHHcCCCcccEEEeccCCCCCCHHHHHHHHHHHHH
Q 018482 84 REKVQLATKFGVVKFDVS---------GLVINGTPEYVRACCEASLKRLDVEYIDLYYQHRVDTTVPIEDTMGELKKLVD 154 (355)
Q Consensus 84 R~~~~i~tK~~~~~~~~~---------~~~~~~s~~~i~~~~~~sL~~L~~d~iDl~~lh~p~~~~~~~~~~~~L~~l~~ 154 (355)
+.++|+++-+|..-.... ....+.++..| -+|+.+.|+|.+. .+++++++..++.++
T Consensus 157 ~G~~~lTaGLGGMgGAQPlA~~mag~v~i~vEvd~~ri-------~kR~~~gyld~~~-------~~ldeal~~~~~a~~ 222 (545)
T TIGR01228 157 KGKWVLTAGLGGMGGAQPLAVTMNGGVSIAVEVDESRI-------DKRLETKYCDEQT-------DSLDEALARAEEAKA 222 (545)
T ss_pred ceeEEEEeCCCccccccHHHHHHcCceEEEEEECHHHH-------HHHHhcCcceeEc-------CCHHHHHHHHHHHHH
Confidence 677888888876543210 01122344444 4577788888652 468999999999999
Q ss_pred cCccceeecCCCCHHHHHHHhhc
Q 018482 155 EGKIKYIGLSEASPDTIRRAHAV 177 (355)
Q Consensus 155 ~Gkir~iGvS~~~~~~l~~~~~~ 177 (355)
+|+...||+-..-.+.+.++.+.
T Consensus 223 ~~~~~SIg~~GNaadv~~~l~~r 245 (545)
T TIGR01228 223 EGKPISIGLLGNAAEVLPELLKR 245 (545)
T ss_pred cCCceEEEeeccHHHHHHHHHHc
Confidence 99999999999888888888775
No 214
>KOG1196 consensus Predicted NAD-dependent oxidoreductase [General function prediction only]
Probab=23.56 E-value=1.5e+02 Score=27.88 Aligned_cols=99 Identities=17% Similarity=0.228 Sum_probs=55.8
Q ss_pred HHHHHHHHHHHcCCC-eEeCccCcCCCChhHHHHHHHHhcCCCCCEEEEeeccccccCCCCcccCCCHHHHHHHHHHHHH
Q 018482 43 VGISIIKHAFDQGIT-FFDTADVYGPNNANELLVGKALKQFPREKVQLATKFGVVKFDVSGLVINGTPEYVRACCEASLK 121 (355)
Q Consensus 43 ~~~~~l~~A~~~Gi~-~~DtA~~Yg~~g~sE~~lg~~L~~~~R~~~~i~tK~~~~~~~~~~~~~~~s~~~i~~~~~~sL~ 121 (355)
...+.|++++..||. +|| +=| |.--+.+-..++ .+.++.++--+...- .-++..+.......-+
T Consensus 211 ~~~~aL~r~~P~GIDiYfe---NVG--G~~lDavl~nM~--~~gri~~CG~ISqYN--------~~~~~~~~~l~~ii~K 275 (343)
T KOG1196|consen 211 DLSAALKRCFPEGIDIYFE---NVG--GKMLDAVLLNMN--LHGRIAVCGMISQYN--------LENPEGLHNLSTIIYK 275 (343)
T ss_pred CHHHHHHHhCCCcceEEEe---ccC--cHHHHHHHHhhh--hccceEeeeeehhcc--------ccCCccccchhhheee
Confidence 567778888888887 555 233 322222222233 456677766554221 1122334444455556
Q ss_pred HcCCCcccEEEeccCCCCCCHHHHHHHHHHHHHcCcccee
Q 018482 122 RLDVEYIDLYYQHRVDTTVPIEDTMGELKKLVDEGKIKYI 161 (355)
Q Consensus 122 ~L~~d~iDl~~lh~p~~~~~~~~~~~~L~~l~~~Gkir~i 161 (355)
|+.+.. +++-.. .....+.++.|..++++|||.+.
T Consensus 276 r~~iqg---flv~d~--~d~~~k~ld~l~~~ikegKI~y~ 310 (343)
T KOG1196|consen 276 RIRIQG---FLVSDY--LDKYPKFLDFLLPYIKEGKITYV 310 (343)
T ss_pred eEEeee---EEeech--hhhhHHHHHHHHHHHhcCceEEe
Confidence 665543 222211 11247889999999999999987
No 215
>PRK05628 coproporphyrinogen III oxidase; Validated
Probab=23.55 E-value=5.5e+02 Score=24.57 Aligned_cols=27 Identities=22% Similarity=0.256 Sum_probs=19.9
Q ss_pred CCHHHHHHHHHHHHHHcCCCcccEEEec
Q 018482 107 GTPEYVRACCEASLKRLDVEYIDLYYQH 134 (355)
Q Consensus 107 ~s~~~i~~~~~~sL~~L~~d~iDl~~lh 134 (355)
-+.+.+++.++..+ .++.+++.++.+.
T Consensus 172 qt~~~~~~tl~~~~-~l~~~~i~~y~l~ 198 (375)
T PRK05628 172 ESDDDWRASLDAAL-EAGVDHVSAYALI 198 (375)
T ss_pred CCHHHHHHHHHHHH-hcCCCEEEeeeee
Confidence 46777777776544 5888999888776
No 216
>PRK08195 4-hyroxy-2-oxovalerate/4-hydroxy-2-oxopentanoic acid aldolase,; Validated
Probab=23.53 E-value=6.4e+02 Score=23.95 Aligned_cols=26 Identities=12% Similarity=0.077 Sum_probs=22.7
Q ss_pred CCCCHHHHHHHHHHHHHcCCCeEeCc
Q 018482 37 DPVPDEVGISIIKHAFDQGITFFDTA 62 (355)
Q Consensus 37 ~~~~~~~~~~~l~~A~~~Gi~~~DtA 62 (355)
..++.++..++++...++||..|+.+
T Consensus 20 ~~f~~~~~~~i~~~L~~aGv~~IEvg 45 (337)
T PRK08195 20 HQYTLEQVRAIARALDAAGVPVIEVT 45 (337)
T ss_pred CccCHHHHHHHHHHHHHcCCCEEEee
Confidence 34588999999999999999999995
No 217
>PLN02681 proline dehydrogenase
Probab=23.51 E-value=7.5e+02 Score=24.71 Aligned_cols=161 Identities=16% Similarity=0.118 Sum_probs=84.4
Q ss_pred HHHHHHHHHHHcCCC-eEeCccCcCCCChhHHHHHHHHhcCC----CCCEEEEeeccccccCCCCcccCCCHHHHHHHHH
Q 018482 43 VGISIIKHAFDQGIT-FFDTADVYGPNNANELLVGKALKQFP----REKVQLATKFGVVKFDVSGLVINGTPEYVRACCE 117 (355)
Q Consensus 43 ~~~~~l~~A~~~Gi~-~~DtA~~Yg~~g~sE~~lg~~L~~~~----R~~~~i~tK~~~~~~~~~~~~~~~s~~~i~~~~~ 117 (355)
...+++++|.+.|++ +||.=..|-. .....+.-+..++.. +.-++++--.... -+++.+...++
T Consensus 221 rl~~i~~~A~~~gv~l~IDAE~s~~q-~aid~l~~~l~~~yN~~~~~~~V~~T~QaYLk----------~t~~~l~~~l~ 289 (455)
T PLN02681 221 RLQKLCERAAQLGVPLLIDAEYTSLQ-PAIDYITYDLAREFNKGKDRPIVYGTYQAYLK----------DARERLRLDLE 289 (455)
T ss_pred HHHHHHHHHHHCCCEEEEeCCcccch-hHHHHHHHHHHHHhccccCCCcEEEEEeCccc----------cCHHHHHHHHH
Confidence 356788999999998 6786555443 334444444444433 3345555444332 35777777777
Q ss_pred HHHHH---cCC-----CcccE-----EEeccCCCC-CCHH---HHH-HHHHHHHH---cCccceeecCCCCHHHHHHHhh
Q 018482 118 ASLKR---LDV-----EYIDL-----YYQHRVDTT-VPIE---DTM-GELKKLVD---EGKIKYIGLSEASPDTIRRAHA 176 (355)
Q Consensus 118 ~sL~~---L~~-----d~iDl-----~~lh~p~~~-~~~~---~~~-~~L~~l~~---~Gkir~iGvS~~~~~~l~~~~~ 176 (355)
.+.+. +|+ -|+|- -...||++- ...+ ..+ ..++.+.+ .|. -++.|.+|+.+-+..+.+
T Consensus 290 ~a~~~g~~~gvKLVRGAY~e~E~~~a~~~g~~~pi~~~k~~Td~~Y~~~~~~lL~~~~~~~-~~~~vATHN~~Si~~a~~ 368 (455)
T PLN02681 290 RSEREGVPLGAKLVRGAYLSLERRLAASLGVPSPVHDTIQDTHACYNRCAEFLLEKASNGD-GEVMLATHNVESGELAAA 368 (455)
T ss_pred HHHhcCCCcceEEEecCCcchhhhhHHhcCCCCCCcCCHHHHHHHHHHHHHHHhhhhccCC-eeeEEecCCHHHHHHHHH
Confidence 66442 222 23321 111222221 1112 223 33333443 244 488899999887666544
Q ss_pred c---CCc--eeeccccccccchhhhchHHHHHHhCCcEEecccCC
Q 018482 177 V---HPV--TALQMEWSLWTRAIEDEIVPLCRELGIGIVPYSPLG 216 (355)
Q Consensus 177 ~---~~~--~~~q~~~n~~~~~~~~~~~~~~~~~gi~v~a~spl~ 216 (355)
. .++ .--.++|..+..- -.++.....+.|..|.-|.|++
T Consensus 369 ~~~~~gi~~~~~~veF~qL~GM-~d~ls~~L~~~G~~V~kYvPyG 412 (455)
T PLN02681 369 KMNELGLHKGDPRVQFAQLLGM-SDNLSFGLGNAGFRVSKYLPYG 412 (455)
T ss_pred HHHHcCCCCCCCCEEEeccCCC-CHHHHHHHHhcCCCEEEEeecc
Confidence 3 111 1123333333321 2345555667799999999996
No 218
>PRK03459 rnpA ribonuclease P; Reviewed
Probab=23.30 E-value=3.9e+02 Score=21.32 Aligned_cols=63 Identities=6% Similarity=-0.004 Sum_probs=43.6
Q ss_pred CCCCEEEEeeccccccCCCCcccCCCHHHHHHHHHHHHHHcCCC---cccEEEeccCCCC-CCHHHHHHHHHHHHHc
Q 018482 83 PREKVQLATKFGVVKFDVSGLVINGTPEYVRACCEASLKRLDVE---YIDLYYQHRVDTT-VPIEDTMGELKKLVDE 155 (355)
Q Consensus 83 ~R~~~~i~tK~~~~~~~~~~~~~~~s~~~i~~~~~~sL~~L~~d---~iDl~~lh~p~~~-~~~~~~~~~L~~l~~~ 155 (355)
+|=-+.|+-|+|.. ..+..+++.+.++.+.+..+ -.|++++-.+... .+..++.+.|+.+.+.
T Consensus 48 ~R~G~~VsKKvG~A----------V~RNRiKR~lRe~~R~~~~~l~~g~D~Viiar~~~~~~~~~~l~~~l~~ll~k 114 (122)
T PRK03459 48 PRFGLVVSKAVGNA----------VIRHRVSRRLRHICADIVDQVPETHHVVIRALPGAATASSAELERDVRAGLGK 114 (122)
T ss_pred CEEEEEEeeeccch----------hHHHHHHHHHHHHHHHhhhccCCCcEEEEEECcccccCCHHHHHHHHHHHHHH
Confidence 44456676676642 45788888888888887642 4699999988654 4667777777766553
No 219
>PF01402 RHH_1: Ribbon-helix-helix protein, copG family; InterPro: IPR002145 CopG, also known as RepA, is responsible for the regulation of plasmid copy number. It binds to the repAB promoter and controls synthesis of the plasmid replication initiator protein RepB. Many bacterial transcription regulation proteins bind DNA through a 'helix-turn-helix' motif, nevertheless CopG displays a fully defined HTH-motif structure that is involved not in DNA-binding, but in the maintenance of the intrinsic dimeric functional structure and cooperativity [, ].; GO: 0003677 DNA binding, 0006355 regulation of transcription, DNA-dependent; PDB: 2BJ3_B 2BJ8_A 2BJ1_A 2BJ9_A 2BJ7_B 1EA4_L 2CPG_C 1B01_B 2BA3_A 2K9I_B ....
Probab=23.17 E-value=1.8e+02 Score=17.51 Aligned_cols=23 Identities=30% Similarity=0.361 Sum_probs=18.4
Q ss_pred HHHHHHHHHHHHcCCCHHHHHHH
Q 018482 251 ILYLRLQKLAEKHECNPAQLALA 273 (355)
Q Consensus 251 ~~~~~l~~la~~~~~s~~qlal~ 273 (355)
+..+.|.++|++.|.|.+++.-.
T Consensus 9 ~~~~~l~~~a~~~g~s~s~~ir~ 31 (39)
T PF01402_consen 9 ELYERLDELAKELGRSRSELIRE 31 (39)
T ss_dssp HHHHHHHHHHHHHTSSHHHHHHH
T ss_pred HHHHHHHHHHHHHCcCHHHHHHH
Confidence 45578999999999999886543
No 220
>TIGR00035 asp_race aspartate racemase.
Probab=23.09 E-value=3.6e+02 Score=23.86 Aligned_cols=63 Identities=17% Similarity=0.122 Sum_probs=43.5
Q ss_pred CCHHHHHHHHHHHHHHcCCCcccEEEeccCCCC------------CCHHHHHHHHHHHHHcCccceeecCCCCHHH
Q 018482 107 GTPEYVRACCEASLKRLDVEYIDLYYQHRVDTT------------VPIEDTMGELKKLVDEGKIKYIGLSEASPDT 170 (355)
Q Consensus 107 ~s~~~i~~~~~~sL~~L~~d~iDl~~lh~p~~~------------~~~~~~~~~L~~l~~~Gkir~iGvS~~~~~~ 170 (355)
-+.++.++-++..-.+.+-++++++.+++|+.. .....+.+.++.|.+.| +..|-+...+...
T Consensus 14 at~~~~~~i~~~~~a~~d~~~~~~i~~~~~~~~dr~~~~~~~~~~~~~~~l~~~~~~L~~~g-~d~iviaCNTah~ 88 (229)
T TIGR00035 14 ATAELFRRINEKTKAKRDQEHPAEVLFNNPNIPDRTAYILGRGEDRPRPILIDIAVKLENAG-ADFIIMPCNTAHK 88 (229)
T ss_pred HHHHHHHHHHHHhHHhcCCCCCceeeeeCCCHHHHHHHHhcCCcchHHHHHHHHHHHHHHcC-CCEEEECCccHHH
Confidence 355666666667777788899999999999531 11234566777776654 7888887766654
No 221
>PF01053 Cys_Met_Meta_PP: Cys/Met metabolism PLP-dependent enzyme; InterPro: IPR000277 Pyridoxal phosphate is the active form of vitamin B6 (pyridoxine or pyridoxal). Pyridoxal 5'-phosphate (PLP) is a versatile catalyst, acting as a coenzyme in a multitude of reactions, including decarboxylation, deamination and transamination [, , ]. PLP-dependent enzymes are primarily involved in the biosynthesis of amino acids and amino acid-derived metabolites, but they are also found in the biosynthetic pathways of amino sugars and in the synthesis or catabolism of neurotransmitters; pyridoxal phosphate can also inhibit DNA polymerases and several steroid receptors []. Inadequate levels of pyridoxal phosphate in the brain can cause neurological dysfunction, particularly epilepsy []. PLP enzymes exist in their resting state as a Schiff base, the aldehyde group of PLP forming a linkage with the epsilon-amino group of an active site lysine residue on the enzyme. The alpha-amino group of the substrate displaces the lysine epsilon-amino group, in the process forming a new aldimine with the substrate. This aldimine is the common central intermediate for all PLP-catalysed reactions, enzymatic and non-enzymatic []. A number of pyridoxal-dependent enzymes involved in the metabolism of cysteine, homocysteine and methionine have been shown [, ] to be evolutionary related. These enzymes are proteins of about 400 amino-acid residues. The pyridoxal-P group is attached to a lysine residue located in the central section of these enzymes.; GO: 0030170 pyridoxal phosphate binding, 0006520 cellular amino acid metabolic process; PDB: 1PFF_A 2NMP_A 3ELP_B 3COG_C 1CS1_A 1E5E_B 3RI6_A 1E5F_A 2FQ6_B 1CL2_B ....
Probab=23.02 E-value=2.2e+02 Score=27.67 Aligned_cols=80 Identities=14% Similarity=0.103 Sum_probs=54.2
Q ss_pred HHHHHHHHHHHHHcCccceeecCCCCHHHHHHHhhc-CCceeeccccccccchhh-hchHHHHHHhC-CcEEecccCCcc
Q 018482 142 IEDTMGELKKLVDEGKIKYIGLSEASPDTIRRAHAV-HPVTALQMEWSLWTRAIE-DEIVPLCRELG-IGIVPYSPLGRG 218 (355)
Q Consensus 142 ~~~~~~~L~~l~~~Gkir~iGvS~~~~~~l~~~~~~-~~~~~~q~~~n~~~~~~~-~~~~~~~~~~g-i~v~a~spl~~G 218 (355)
...+.+.++++....-|...=+...+.+.++++++. .+..++..+-|+...-.+ ..+.+.|+++| +.++.-+.++.+
T Consensus 104 Y~~t~~~~~~~l~~~gv~v~~~d~~d~~~l~~~l~~~t~~v~~EspsNP~l~v~Dl~~i~~~a~~~g~~~~vVDnT~atp 183 (386)
T PF01053_consen 104 YGGTYRLLEELLPRFGVEVTFVDPTDLEALEAALRPNTKLVFLESPSNPTLEVPDLEAIAKLAKEHGDILVVVDNTFATP 183 (386)
T ss_dssp SHHHHHHHHHCHHHTTSEEEEESTTSHHHHHHHHCTTEEEEEEESSBTTTTB---HHHHHHHHHHTTT-EEEEECTTTHT
T ss_pred cCcchhhhhhhhcccCcEEEEeCchhHHHHHhhccccceEEEEEcCCCcccccccHHHHHHHHHHhCCceEEeeccccce
Confidence 456777777655544444444445577888887765 456777788887765444 78899999999 999998888776
Q ss_pred cCC
Q 018482 219 FFG 221 (355)
Q Consensus 219 ~L~ 221 (355)
++.
T Consensus 184 ~~~ 186 (386)
T PF01053_consen 184 YNQ 186 (386)
T ss_dssp TTC
T ss_pred eee
Confidence 543
No 222
>PF00072 Response_reg: Response regulator receiver domain; InterPro: IPR001789 Two-component signal transduction systems enable bacteria to sense, respond, and adapt to a wide range of environments, stressors, and growth conditions []. Some bacteria can contain up to as many as 200 two-component systems that need tight regulation to prevent unwanted cross-talk []. These pathways have been adapted to response to a wide variety of stimuli, including nutrients, cellular redox state, changes in osmolarity, quorum signals, antibiotics, and more []. Two-component systems are comprised of a sensor histidine kinase (HK) and its cognate response regulator (RR) []. The HK catalyses its own auto-phosphorylation followed by the transfer of the phosphoryl group to the receiver domain on RR; phosphorylation of the RR usually activates an attached output domain, which can then effect changes in cellular physiology, often by regulating gene expression. Some HK are bifunctional, catalysing both the phosphorylation and dephosphorylation of their cognate RR. The input stimuli can regulate either the kinase or phosphatase activity of the bifunctional HK. A variant of the two-component system is the phospho-relay system. Here a hybrid HK auto-phosphorylates and then transfers the phosphoryl group to an internal receiver domain, rather than to a separate RR protein. The phosphoryl group is then shuttled to histidine phosphotransferase (HPT) and subsequently to a terminal RR, which can evoke the desired response [, ]. Bipartite response regulator proteins are involved in a two-component signal transduction system in bacteria, and certain eukaryotes like protozoa, that functions to detect and respond to environmental changes []. These systems have been detected during host invasion, drug resistance, motility, phosphate uptake, osmoregulation, and nitrogen fixation, amongst others []. The two-component system consists of a histidine protein kinase environmental sensor that phosphorylates the receiver domain of a response regulator protein; phosphorylation induces a conformational change in the response regulator, which activates the effector domain, triggering the cellular response []. The domains of the two-component proteins are highly modular, but the core structures and activities are maintained. The response regulators act as phosphorylation-activated switches to affect a cellular response, usually by transcriptional regulation. Most of these proteins consist of two domains, an N-terminal response regulator receiver domain, and a variable C-terminal effector domain with DNA-binding activity. This entry represents the response regulator receiver domain, which belongs to the CheY family, and receives the signal from the sensor partner in the two-component system.; GO: 0000156 two-component response regulator activity, 0000160 two-component signal transduction system (phosphorelay), 0006355 regulation of transcription, DNA-dependent; PDB: 2QR3_A 2QXY_A 1I3C_A 1JLK_A 2PKX_A 2PL1_A 3H1F_A 3H1E_A 3GWG_A 3H1G_A ....
Probab=22.94 E-value=2.6e+02 Score=20.64 Aligned_cols=60 Identities=12% Similarity=0.069 Sum_probs=35.6
Q ss_pred CcccEEEeccCCCCCCHHHHHHHHHHHHHcCccceeecCCC-CHHHHHHHhhcCCceeecccc
Q 018482 126 EYIDLYYQHRVDTTVPIEDTMGELKKLVDEGKIKYIGLSEA-SPDTIRRAHAVHPVTALQMEW 187 (355)
Q Consensus 126 d~iDl~~lh~p~~~~~~~~~~~~L~~l~~~Gkir~iGvS~~-~~~~l~~~~~~~~~~~~q~~~ 187 (355)
...|++++....+.....++++.+.... ..++-|.+++. +.....++.+..-..++.-++
T Consensus 42 ~~~d~iiid~~~~~~~~~~~~~~i~~~~--~~~~ii~~t~~~~~~~~~~~~~~g~~~~l~kp~ 102 (112)
T PF00072_consen 42 HPPDLIIIDLELPDGDGLELLEQIRQIN--PSIPIIVVTDEDDSDEVQEALRAGADDYLSKPF 102 (112)
T ss_dssp STESEEEEESSSSSSBHHHHHHHHHHHT--TTSEEEEEESSTSHHHHHHHHHTTESEEEESSS
T ss_pred cCceEEEEEeeecccccccccccccccc--ccccEEEecCCCCHHHHHHHHHCCCCEEEECCC
Confidence 4489999987655554555555554433 36777777754 456666666554334443333
No 223
>PRK08247 cystathionine gamma-synthase; Reviewed
Probab=22.85 E-value=3.5e+02 Score=25.83 Aligned_cols=61 Identities=10% Similarity=0.120 Sum_probs=38.1
Q ss_pred ceeecCCCCHHHHHHHhhc-CCceeeccccccccchh-hhchHHHHHHhCCcEEecccCCccc
Q 018482 159 KYIGLSEASPDTIRRAHAV-HPVTALQMEWSLWTRAI-EDEIVPLCRELGIGIVPYSPLGRGF 219 (355)
Q Consensus 159 r~iGvS~~~~~~l~~~~~~-~~~~~~q~~~n~~~~~~-~~~~~~~~~~~gi~v~a~spl~~G~ 219 (355)
+..-+...+.+.+++++.. .+..++..+.|+..... -.++.+.|+++|+.++.-..++.++
T Consensus 117 ~v~~vd~~d~~~l~~~i~~~tklv~le~P~NP~~~~~dl~~I~~la~~~g~~lIvD~t~~~~~ 179 (366)
T PRK08247 117 RFVYVNTASLKAIEQAITPNTKAIFIETPTNPLMQETDIAAIAKIAKKHGLLLIVDNTFYTPV 179 (366)
T ss_pred eEEEECCCCHHHHHHhcccCceEEEEECCCCCCCcHHHHHHHHHHHHHcCCEEEEECCCcccc
Confidence 3334444467777776643 34455555677644322 2788899999999888777765444
No 224
>PRK14466 ribosomal RNA large subunit methyltransferase N; Provisional
Probab=22.45 E-value=6e+02 Score=24.39 Aligned_cols=91 Identities=10% Similarity=0.012 Sum_probs=57.9
Q ss_pred cEEEeccCCCC-----------CCHHHHHHHHHHHHHcC-c---cceeecC--CCCHHHHHHH---hhcCCceeeccccc
Q 018482 129 DLYYQHRVDTT-----------VPIEDTMGELKKLVDEG-K---IKYIGLS--EASPDTIRRA---HAVHPVTALQMEWS 188 (355)
Q Consensus 129 Dl~~lh~p~~~-----------~~~~~~~~~L~~l~~~G-k---ir~iGvS--~~~~~~l~~~---~~~~~~~~~q~~~n 188 (355)
=.+-||.|+.+ .++++++++++++.+.. + +-|+=+. |.+.+++.++ +...+..++-++||
T Consensus 209 LavSLha~~~e~R~~i~P~~~~~~l~~l~~al~~y~~~~~rri~~Ey~Li~gvND~~e~a~~L~~ll~~~~~~VNLIp~N 288 (345)
T PRK14466 209 LAISLHSPFPEQRRELMPAEKAFSIKEIIDLLKNYDFSKQRRVSFEYIVFKGLNDSLKHAKELVKLLRGIDCRVNLIRFH 288 (345)
T ss_pred EEEEcCCCCHHHHHHhcCCccCCCHHHHHHHHHHHHHhhCCEEEEEEEEeCCCCCCHHHHHHHHHHHcCCCceEEEEecC
Confidence 35889988542 34688999999876643 2 2333232 4455555444 44456778888999
Q ss_pred cccch-----hh---hchHHHHHHhCCcEEecccCCccc
Q 018482 189 LWTRA-----IE---DEIVPLCRELGIGIVPYSPLGRGF 219 (355)
Q Consensus 189 ~~~~~-----~~---~~~~~~~~~~gi~v~a~spl~~G~ 219 (355)
+.... .. ....+..+++||.+......+..+
T Consensus 289 p~~~~~~~~~s~~~~~~F~~~L~~~gi~~tvR~s~G~dI 327 (345)
T PRK14466 289 AIPGVDLEGSDMARMEAFRDYLTSHGVFTTIRASRGEDI 327 (345)
T ss_pred CCCCCCCcCCCHHHHHHHHHHHHHCCCcEEEeCCCCCch
Confidence 74331 11 456677888999999887776433
No 225
>TIGR00262 trpA tryptophan synthase, alpha subunit. Tryptophan synthase catalyzes the last step in the biosynthesis of tryptophan. The alpha chain is responsible for the aldol cleavage of indoleglycerol phosphate to indole and glyceraldehyde 3-phosphate. In bacteria and plants each domain is found on a separate subunit (alpha and beta chains), while in fungi the two domains are fused together on a single multifunctional protein. The signature pattern for trpA contains three conserved acidic residues. [LIVM]-E-[LIVM]-G-x(2)-[FYC]-[ST]-[DE]-[PA]-[LIVMY]-[AGLI]-[DE]-G and this is located between residues 43-58 of the model. The Sulfolobus solfataricus trpA is known to be quite divergent from other known trpA sequences.
Probab=22.45 E-value=5.9e+02 Score=23.11 Aligned_cols=87 Identities=11% Similarity=0.044 Sum_probs=51.9
Q ss_pred cccEEEeccCCCC-------------------CCHHHHHHHHHHHHHcC-ccc--eeecCCC----CHHHHHHHhhcCCc
Q 018482 127 YIDLYYQHRVDTT-------------------VPIEDTMGELKKLVDEG-KIK--YIGLSEA----SPDTIRRAHAVHPV 180 (355)
Q Consensus 127 ~iDl~~lh~p~~~-------------------~~~~~~~~~L~~l~~~G-kir--~iGvS~~----~~~~l~~~~~~~~~ 180 (355)
-+|++-|--|..+ ..++.+++.++++++.. .+. +.+..|- ..+.+.+.+...++
T Consensus 37 Gad~iElGiPfsDP~aDGpvIq~a~~~al~~G~~~~~~~~~v~~ir~~~~~~plv~m~Y~Npi~~~G~e~f~~~~~~aGv 116 (256)
T TIGR00262 37 GADALELGVPFSDPLADGPTIQAADLRALRAGMTPEKCFELLKKVRQKHPNIPIGLLTYYNLIFRKGVEEFYAKCKEVGV 116 (256)
T ss_pred CCCEEEECCCCCCCCCcCHHHHHHHHHHHHcCCCHHHHHHHHHHHHhcCCCCCEEEEEeccHHhhhhHHHHHHHHHHcCC
Confidence 4678888877543 12356788888888652 333 4455441 22554444455566
Q ss_pred eeeccccccccchhhhchHHHHHHhCCcEE-ecccC
Q 018482 181 TALQMEWSLWTRAIEDEIVPLCRELGIGIV-PYSPL 215 (355)
Q Consensus 181 ~~~q~~~n~~~~~~~~~~~~~~~~~gi~v~-a~spl 215 (355)
+.+-++.-+... ..++++.|+++|+..+ ..+|-
T Consensus 117 dgviipDlp~ee--~~~~~~~~~~~gl~~i~lv~P~ 150 (256)
T TIGR00262 117 DGVLVADLPLEE--SGDLVEAAKKHGVKPIFLVAPN 150 (256)
T ss_pred CEEEECCCChHH--HHHHHHHHHHCCCcEEEEECCC
Confidence 666665544422 2678999999998854 44443
No 226
>PF01904 DUF72: Protein of unknown function DUF72; InterPro: IPR002763 The function of this family is unknown. Aquifex aeolicus has two copies of this protein. A probable aspartyl-tRNA synthetase from Escherichia coli [] belongs to this group.; PDB: 1VPY_A 1ZTV_A 1VPQ_A.
Probab=22.41 E-value=5.5e+02 Score=22.77 Aligned_cols=128 Identities=15% Similarity=0.140 Sum_probs=70.8
Q ss_pred CCeEeC-ccCcCCCChhHHHHHHHHhcCCCCCEEEEeeccccccCCCCcccCCCHHHHHHHHHHHHHHcCCCcccEEEec
Q 018482 56 ITFFDT-ADVYGPNNANELLVGKALKQFPREKVQLATKFGVVKFDVSGLVINGTPEYVRACCEASLKRLDVEYIDLYYQH 134 (355)
Q Consensus 56 i~~~Dt-A~~Yg~~g~sE~~lg~~L~~~~R~~~~i~tK~~~~~~~~~~~~~~~s~~~i~~~~~~sL~~L~~d~iDl~~lh 134 (355)
++.++. +..|. --.++.+.++.++ ..+++.++-|+......... -....+.+.+.+-+.++.|+ +.+..+++.
T Consensus 19 F~~VEvn~TFY~--~P~~~t~~~W~~~-~p~~F~F~vK~~~~iTH~~~--l~~~~~~~~~~F~~~~~~L~-~klg~iL~Q 92 (230)
T PF01904_consen 19 FNTVEVNSTFYR--IPSPETVARWREQ-TPEGFRFSVKAPQLITHERR--LRDCAEELWRRFLEALEPLG-EKLGPILFQ 92 (230)
T ss_dssp -SEEEE-HHCCS--SS-HHHHHHHHCT-S-TT-EEEEE--CCCCCCCH--CGSSHHHHHHHHHHHCHHHH-T-EEEEEEE
T ss_pred CCeEEECcccCC--CCCHHHHHHHHhh-CCCCeEEEEeccHHheeccc--ccccHHHHHHHHHHHHHHHh-hcceEEEEE
Confidence 666664 45677 3467788888885 45789999999765431100 01235566466666999998 899999999
Q ss_pred cCCCCCCHHHHHHHHHHHHHcCccceeecCCCCHHHHHHHhhcCCceeeccccccccchhhhchHHHHHHhCCcEEe
Q 018482 135 RVDTTVPIEDTMGELKKLVDEGKIKYIGLSEASPDTIRRAHAVHPVTALQMEWSLWTRAIEDEIVPLCRELGIGIVP 211 (355)
Q Consensus 135 ~p~~~~~~~~~~~~L~~l~~~Gkir~iGvS~~~~~~l~~~~~~~~~~~~q~~~n~~~~~~~~~~~~~~~~~gi~v~a 211 (355)
-|.....-.+.++.|..+.+.=. ..-...+.++.--+. ..+++++++++|+..+.
T Consensus 93 ~Ppsf~~~~~~~~~l~~~l~~~~-------------------~~~~~avE~R~~sW~---~~~~~~~l~~~~~~~v~ 147 (230)
T PF01904_consen 93 FPPSFRFTPENLERLDAFLDRLP-------------------RGFRYAVEFRHPSWF---TEEVFELLREHGVALVI 147 (230)
T ss_dssp --TT--S-HHHHHHHHHHHHHTT--------------------TS-EEEE--BGGGG---CHHHHHHHHHTT-EEEE
T ss_pred cCCCcCCCHHHHHHHHHHHhhcc-------------------cccceEEecCCcchh---hHHHHHHHHHcCCEEEE
Confidence 98764444566666666555421 111233444333333 25788999999988764
No 227
>COG1104 NifS Cysteine sulfinate desulfinase/cysteine desulfurase and related enzymes [Amino acid transport and metabolism]
Probab=22.24 E-value=2.6e+02 Score=27.26 Aligned_cols=67 Identities=16% Similarity=0.232 Sum_probs=34.5
Q ss_pred HHHHHHHHHHHcC-ccceeecCCC---CHHHHHHHhhcCC-ceeecccccc-ccchhhhchHHHHHHhCCcEE
Q 018482 144 DTMGELKKLVDEG-KIKYIGLSEA---SPDTIRRAHAVHP-VTALQMEWSL-WTRAIEDEIVPLCRELGIGIV 210 (355)
Q Consensus 144 ~~~~~L~~l~~~G-kir~iGvS~~---~~~~l~~~~~~~~-~~~~q~~~n~-~~~~~~~~~~~~~~~~gi~v~ 210 (355)
-+++.++.|.++| .|.|+.|... +.+++++++.... .+.+|.--|- ..-.+-.++-+.|+++|+.+.
T Consensus 103 aVl~~~~~Le~~g~~Vtyl~V~~~G~v~~e~L~~al~~~T~LVSim~aNnE~G~IQpI~ei~~i~k~~~i~fH 175 (386)
T COG1104 103 AVLNTCRYLERQGFEVTYLPVDSNGLVDLEQLEEALRPDTILVSIMHANNETGTIQPIAEIGEICKERGILFH 175 (386)
T ss_pred HHHHHHHHHHhcCCeEEEeCCCCCCeEcHHHHHHhcCCCceEEEEEecccCeeecccHHHHHHHHHHcCCeEE
Confidence 4566666665556 5777766653 4566666665422 2333322221 011112566777777765544
No 228
>cd02810 DHOD_DHPD_FMN Dihydroorotate dehydrogenase (DHOD) and Dihydropyrimidine dehydrogenase (DHPD) FMN-binding domain. DHOD catalyzes the oxidation of (S)-dihydroorotate to orotate. This is the fourth step and the only redox reaction in the de novo biosynthesis of UMP, the precursor of all pyrimidine nucleotides. DHOD requires FMN as co-factor. DHOD divides into class 1 and class 2 based on their amino acid sequences and cellular location. Members of class 1 are cytosolic enzymes and multimers while class 2 enzymes are membrane associated and monomeric. The class 1 enzymes can be further divided into subtypes 1A and 1B which are homodimers and heterotetrameric proteins, respectively. DHPD catalyzes the first step in pyrimidine degradation: the NADPH-dependent reduction of uracil and thymine to the corresponding 5,6-dihydropyrimidines. DHPD contains two FAD, two FMN and eight [4Fe-4S] clusters, arranged in two electron transfer chains that pass its homodimeric interface twice. Two of
Probab=22.22 E-value=6e+02 Score=23.13 Aligned_cols=131 Identities=14% Similarity=0.089 Sum_probs=74.8
Q ss_pred CHHHHHHHHHHHHHcCCCeEeC---ccCcCCC---ChhHHHHHHHHhcCCCC-CEEEEeeccccccCCCCcccCCCHHHH
Q 018482 40 PDEVGISIIKHAFDQGITFFDT---ADVYGPN---NANELLVGKALKQFPRE-KVQLATKFGVVKFDVSGLVINGTPEYV 112 (355)
Q Consensus 40 ~~~~~~~~l~~A~~~Gi~~~Dt---A~~Yg~~---g~sE~~lg~~L~~~~R~-~~~i~tK~~~~~~~~~~~~~~~s~~~i 112 (355)
+.++..+..+.+.+.|+..|+. +++...+ ....+.+.+.++..++. ++-|..|+... .+.+.+
T Consensus 109 ~~~~~~~~a~~~~~~G~d~ielN~~cP~~~~~~~~~~~~~~~~eiv~~vr~~~~~pv~vKl~~~----------~~~~~~ 178 (289)
T cd02810 109 SKEDYVELARKIERAGAKALELNLSCPNVGGGRQLGQDPEAVANLLKAVKAAVDIPLLVKLSPY----------FDLEDI 178 (289)
T ss_pred CHHHHHHHHHHHHHhCCCEEEEEcCCCCCCCCcccccCHHHHHHHHHHHHHccCCCEEEEeCCC----------CCHHHH
Confidence 5678888888889999999994 3332210 11345555666553222 56688898753 234444
Q ss_pred HHHHHHHHHHcCCCcccEEEeccCCCC-------------C---C------HHHHHHHHHHHHHcC--ccceeecCCC-C
Q 018482 113 RACCEASLKRLDVEYIDLYYQHRVDTT-------------V---P------IEDTMGELKKLVDEG--KIKYIGLSEA-S 167 (355)
Q Consensus 113 ~~~~~~sL~~L~~d~iDl~~lh~p~~~-------------~---~------~~~~~~~L~~l~~~G--kir~iGvS~~-~ 167 (355)
.+.++ .++..|. |.+.+|+-... . . ..-.++.+.++++.= .+.-||+... +
T Consensus 179 ~~~a~-~l~~~Ga---d~i~~~~~~~~~~~~~~~~~~~~~~~~~g~sg~~~~~~~~~~v~~i~~~~~~~ipiia~GGI~~ 254 (289)
T cd02810 179 VELAK-AAERAGA---DGLTAINTISGRVVDLKTVGPGPKRGTGGLSGAPIRPLALRWVARLAARLQLDIPIIGVGGIDS 254 (289)
T ss_pred HHHHH-HHHHcCC---CEEEEEcccCccceecccCccccCCCCCccCcHHHHHHHHHHHHHHHHhcCCCCCEEEECCCCC
Confidence 44433 4666775 45555532100 0 0 012466677776653 6777777765 4
Q ss_pred HHHHHHHhhcCCceeecc
Q 018482 168 PDTIRRAHAVHPVTALQM 185 (355)
Q Consensus 168 ~~~l~~~~~~~~~~~~q~ 185 (355)
.+.+.+++.. +.+.+|+
T Consensus 255 ~~da~~~l~~-GAd~V~v 271 (289)
T cd02810 255 GEDVLEMLMA-GASAVQV 271 (289)
T ss_pred HHHHHHHHHc-CccHheE
Confidence 6777777663 3566665
No 229
>PRK14462 ribosomal RNA large subunit methyltransferase N; Provisional
Probab=22.12 E-value=5e+02 Score=25.00 Aligned_cols=88 Identities=13% Similarity=0.136 Sum_probs=56.0
Q ss_pred EeccCCCC-----------CCHHHHHHHHHHHH-HcCc---cceeecCC--CCHHHHHHHhh---cCCceeecccccccc
Q 018482 132 YQHRVDTT-----------VPIEDTMGELKKLV-DEGK---IKYIGLSE--ASPDTIRRAHA---VHPVTALQMEWSLWT 191 (355)
Q Consensus 132 ~lh~p~~~-----------~~~~~~~~~L~~l~-~~Gk---ir~iGvS~--~~~~~l~~~~~---~~~~~~~q~~~n~~~ 191 (355)
-||.++++ .++++++++++.+. +.|+ |+|+=+.. .+.+.++++.+ ..+..++-++||...
T Consensus 225 SLha~d~e~r~~l~pv~~~~~l~~ll~~l~~y~~~~~~~i~ieyvLI~GvNDs~e~a~~La~llk~l~~~VnLIPyn~~~ 304 (356)
T PRK14462 225 SLHAVDDELRSELMPINKAYNIESIIDAVRKFPIDQRKRVMFEYLVIKDVNDDLKSAKKLVKLLNGIKAKVNLILFNPHE 304 (356)
T ss_pred ECCCCCHHHHHHhCCCCccCCHHHHHHHHHHHHHHhCCeEEEEEEEECCCCCCHHHHHHHHHHHhhcCcEEEEEeCCCCC
Confidence 48998653 23467888888665 5565 66665543 35555555443 345678888999765
Q ss_pred ch----hh----hchHHHHHHhCCcEEecccCCccc
Q 018482 192 RA----IE----DEIVPLCRELGIGIVPYSPLGRGF 219 (355)
Q Consensus 192 ~~----~~----~~~~~~~~~~gi~v~a~spl~~G~ 219 (355)
.. +. ....+..+++|+.+......+..+
T Consensus 305 ~~~~~~ps~e~i~~f~~~l~~~gi~vtvR~~~G~dI 340 (356)
T PRK14462 305 GSKFERPSLEDMIKFQDYLNSKGLLCTIRESKGLDI 340 (356)
T ss_pred CCCCCCCCHHHHHHHHHHHHHCCCcEEEeCCCCCch
Confidence 31 11 345566778899998887776443
No 230
>cd08556 GDPD Glycerophosphodiester phosphodiesterase domain as found in prokaryota and eukaryota, and similar proteins. The typical glycerophosphodiester phosphodiesterase domain (GDPD) consists of a TIM barrel and a small insertion domain named the GDPD-insertion (GDPD-I) domain, which is specific for GDPD proteins. This family corresponds to both typical GDPD domain and GDPD-like domain which lacks the GDPD-I region. Members in this family mainly consist of a large family of prokaryotic and eukaryotic glycerophosphodiester phosphodiesterases (GP-GDEs, EC 3.1.4.46), and a number of uncharacterized homologs. Sphingomyelinases D (SMases D) (sphingomyelin phosphodiesterase D, EC 3.1.4.41) from spider venom, SMases D-like proteins, and phospholipase D (PLD) from several pathogenic bacteria are also included in this family. GDPD plays an essential role in glycerol metabolism and catalyzes the hydrolysis of glycerophosphodiesters to sn-glycerol-3-phosphate (G3P) and the corresponding alcoho
Probab=22.10 E-value=4.5e+02 Score=21.79 Aligned_cols=151 Identities=12% Similarity=0.102 Sum_probs=75.4
Q ss_pred CHHHHHHHHHHHHHcCCCeEeCccCcCCCCh-----hHHHHHHHHhcCC-CCCEEEEeeccccccCCCCcccCCCHHHHH
Q 018482 40 PDEVGISIIKHAFDQGITFFDTADVYGPNNA-----NELLVGKALKQFP-REKVQLATKFGVVKFDVSGLVINGTPEYVR 113 (355)
Q Consensus 40 ~~~~~~~~l~~A~~~Gi~~~DtA~~Yg~~g~-----sE~~lg~~L~~~~-R~~~~i~tK~~~~~~~~~~~~~~~s~~~i~ 113 (355)
.+|.....++.|++.|.+.|++-=..-.+|. .-..+-++|+..+ +-.+.|=.|.... ...+.
T Consensus 11 ~pent~~a~~~a~~~g~~~iE~Dv~~tkDg~~vv~Hdi~tL~e~l~~~~~~~~i~leiK~~~~------------~~~~~ 78 (189)
T cd08556 11 APENTLAAFRKALEAGADGVELDVQLTKDGVLVVIHDIPTLEEVLELVKGGVGLNIELKEPTR------------YPGLE 78 (189)
T ss_pred CCchHHHHHHHHHHcCCCEEEEEeeEcCCCCEEEEcCCCCHHHHHHhcccCcEEEEEECCCCC------------chhHH
Confidence 4577889999999999998875422221110 0011223333322 2234555553211 22345
Q ss_pred HHHHHHHHHcCCCcccEEEeccCCCCCCHHHHHHHHHHHHHcCccceeecCCCCHHHHH-HHhhcCCceeeccccccccc
Q 018482 114 ACCEASLKRLDVEYIDLYYQHRVDTTVPIEDTMGELKKLVDEGKIKYIGLSEASPDTIR-RAHAVHPVTALQMEWSLWTR 192 (355)
Q Consensus 114 ~~~~~sL~~L~~d~iDl~~lh~p~~~~~~~~~~~~L~~l~~~Gkir~iGvS~~~~~~l~-~~~~~~~~~~~q~~~n~~~~ 192 (355)
+.+.+.+++.+. .+-+++.+.+. +.+..+.+....=++..+-- +....... .......++.+.+.+..+
T Consensus 79 ~~l~~~i~~~~~--~~~v~i~s~~~-----~~l~~~~~~~p~~~~~~~~~-~~~~~~~~~~~~~~~~~~~v~~~~~~~-- 148 (189)
T cd08556 79 AKVAELLREYGL--EERVVVSSFDH-----EALRALKELDPEVPTGLLVD-KPPLDPLLAELARALGADAVNPHYKLL-- 148 (189)
T ss_pred HHHHHHHHHcCC--cCCEEEEeCCH-----HHHHHHHHhCCCCcEEEEee-cCcccchhhhHHHhcCCeEEccChhhC--
Confidence 556666666652 24444544432 33344433332212222221 11111111 123334556666666543
Q ss_pred hhhhchHHHHHHhCCcEEeccc
Q 018482 193 AIEDEIVPLCRELGIGIVPYSP 214 (355)
Q Consensus 193 ~~~~~~~~~~~~~gi~v~a~sp 214 (355)
...+++.|+++|+.+.+|..
T Consensus 149 --~~~~i~~~~~~g~~v~~wtv 168 (189)
T cd08556 149 --TPELVRAAHAAGLKVYVWTV 168 (189)
T ss_pred --CHHHHHHHHHcCCEEEEEcC
Confidence 25789999999999999964
No 231
>cd07948 DRE_TIM_HCS Saccharomyces cerevisiae homocitrate synthase and related proteins, catalytic TIM barrel domain. Homocitrate synthase (HCS) catalyzes the condensation of acetyl-CoA and alpha-ketoglutarate to form homocitrate, the first step in the lysine biosynthesis pathway. This family includes the Yarrowia lipolytica LYS1 protein as well as the Saccharomyces cerevisiae LYS20 and LYS21 proteins. This family belongs to the DRE-TIM metallolyase superfamily. DRE-TIM metallolyases include 2-isopropylmalate synthase (IPMS), alpha-isopropylmalate synthase (LeuA), 3-hydroxy-3-methylglutaryl-CoA lyase, homocitrate synthase, citramalate synthase, 4-hydroxy-2-oxovalerate aldolase, re-citrate synthase, transcarboxylase 5S, pyruvate carboxylase, AksA, and FrbC. These members all share a conserved triose-phosphate isomerase (TIM) barrel domain consisting of a core beta(8)-alpha(8) motif with the eight parallel beta strands forming an enclosed barrel surrounded by eight alpha helices. Th
Probab=21.84 E-value=6.1e+02 Score=23.09 Aligned_cols=25 Identities=20% Similarity=0.248 Sum_probs=22.0
Q ss_pred CCHHHHHHHHHHHHHcCCCeEeCcc
Q 018482 39 VPDEVGISIIKHAFDQGITFFDTAD 63 (355)
Q Consensus 39 ~~~~~~~~~l~~A~~~Gi~~~DtA~ 63 (355)
++.++..++++.-.++||..|+...
T Consensus 19 ~s~~~k~~i~~~L~~~Gv~~IEvG~ 43 (262)
T cd07948 19 FDTEDKIEIAKALDAFGVDYIELTS 43 (262)
T ss_pred CCHHHHHHHHHHHHHcCCCEEEEEC
Confidence 4778999999999999999999863
No 232
>TIGR03849 arch_ComA phosphosulfolactate synthase. This model finds the ComA (Coenzyme M biosynthesis A) protein, phosphosulfolactate synthase, in methanogenic archaea. The ComABC pathway is one of at least two pathways to the intermediate sulfopyruvate. Coenzyme M occurs rarely and sporadically outside of the archaea, as for expoxide metabolism in Xanthobacter autotrophicus Py2, but candidate phosphosulfolactate synthases from that and other species occur fall below the cutoff and outside the scope of this model. This model deliberately is narrower in scope than pfam02679.
Probab=21.83 E-value=2.5e+02 Score=25.35 Aligned_cols=97 Identities=14% Similarity=0.116 Sum_probs=0.0
Q ss_pred HHHHHHHHHcCCCcccEEEeccCCCCCCHHHHHHHHHHHHH--------cCccceeecCCCCHHHHHHHhhcCCceeecc
Q 018482 114 ACCEASLKRLDVEYIDLYYQHRVDTTVPIEDTMGELKKLVD--------EGKIKYIGLSEASPDTIRRAHAVHPVTALQM 185 (355)
Q Consensus 114 ~~~~~sL~~L~~d~iDl~~lh~p~~~~~~~~~~~~L~~l~~--------~Gkir~iGvS~~~~~~l~~~~~~~~~~~~q~ 185 (355)
+.++..|+-+| +|||++=+-|=......+++++..-++.+ -|-.-.+-++.-..++..+.++..+|+++.+
T Consensus 12 ~~~~d~Le~~g-~yID~lKfg~Gt~~l~~~~~l~eki~la~~~~V~v~~GGtl~E~~~~q~~~~~Yl~~~k~lGf~~IEi 90 (237)
T TIGR03849 12 KFVEDYLKVCG-DYITFVKFGWGTSALIDRDIVKEKIEMYKDYGIKVYPGGTLFEIAHSKGKFDEYLNECDELGFEAVEI 90 (237)
T ss_pred HHHHHHHHHhh-hheeeEEecCceEeeccHHHHHHHHHHHHHcCCeEeCCccHHHHHHHhhhHHHHHHHHHHcCCCEEEE
Q ss_pred ccccccchhh--hchHHHHHHhCCcEEe
Q 018482 186 EWSLWTRAIE--DEIVPLCRELGIGIVP 211 (355)
Q Consensus 186 ~~n~~~~~~~--~~~~~~~~~~gi~v~a 211 (355)
.-..+.-..+ ..+++.++++|..+..
T Consensus 91 S~G~~~i~~~~~~rlI~~~~~~g~~v~~ 118 (237)
T TIGR03849 91 SDGSMEISLEERCNLIERAKDNGFMVLS 118 (237)
T ss_pred cCCccCCCHHHHHHHHHHHHhCCCeEec
No 233
>COG2896 MoaA Molybdenum cofactor biosynthesis enzyme [Coenzyme metabolism]
Probab=21.58 E-value=3.7e+02 Score=25.56 Aligned_cols=98 Identities=12% Similarity=0.142 Sum_probs=56.7
Q ss_pred CCHHHHHHHHHHHHHcCCCeEeCccCcCCCChhHHHHHHHHhcCC---CCCEEEEeeccccccCCCCcccCCCHHHHHHH
Q 018482 39 VPDEVGISIIKHAFDQGITFFDTADVYGPNNANELLVGKALKQFP---REKVQLATKFGVVKFDVSGLVINGTPEYVRAC 115 (355)
Q Consensus 39 ~~~~~~~~~l~~A~~~Gi~~~DtA~~Yg~~g~sE~~lg~~L~~~~---R~~~~i~tK~~~~~~~~~~~~~~~s~~~i~~~ 115 (355)
.+.++...+++.|.+.|++=|=-+. |. ..-.+.|-..++... -.++-++|-.. ....
T Consensus 43 Ls~eei~~~~~~~~~~Gv~kvRlTG--GE-PllR~dl~eIi~~l~~~~~~~islTTNG~-----------------~L~~ 102 (322)
T COG2896 43 LSLEEIRRLVRAFAELGVEKVRLTG--GE-PLLRKDLDEIIARLARLGIRDLSLTTNGV-----------------LLAR 102 (322)
T ss_pred CCHHHHHHHHHHHHHcCcceEEEeC--CC-chhhcCHHHHHHHHhhcccceEEEecchh-----------------hHHH
Confidence 5789999999999999999887542 11 122222333333222 35566666532 3444
Q ss_pred HHHHHHHcCCCcccEEEeccCCCC--------CCHHHHHHHHHHHHHcCc
Q 018482 116 CEASLKRLDVEYIDLYYQHRVDTT--------VPIEDTMGELKKLVDEGK 157 (355)
Q Consensus 116 ~~~sL~~L~~d~iDl~~lh~p~~~--------~~~~~~~~~L~~l~~~Gk 157 (355)
...-|+.-|++.|-+ -||..+++ ..+.++++.+++.++.|.
T Consensus 103 ~a~~Lk~AGl~rVNV-SLDsld~e~f~~IT~~~~~~~Vl~GI~~A~~~Gl 151 (322)
T COG2896 103 RAADLKEAGLDRVNV-SLDSLDPEKFRKITGRDRLDRVLEGIDAAVEAGL 151 (322)
T ss_pred HHHHHHHcCCcEEEe-ecccCCHHHHHHHhCCCcHHHHHHHHHHHHHcCC
Confidence 456677777665542 34444432 124567777777777665
No 234
>CHL00076 chlB photochlorophyllide reductase subunit B
Probab=21.47 E-value=8.6e+02 Score=24.64 Aligned_cols=89 Identities=13% Similarity=0.228 Sum_probs=50.4
Q ss_pred ccEEEeccCCCCCC-H---HHHHHHHHH-H--------------HHcCccceeecCC------CCHHHHHHHhhcCCcee
Q 018482 128 IDLYYQHRVDTTVP-I---EDTMGELKK-L--------------VDEGKIKYIGLSE------ASPDTIRRAHAVHPVTA 182 (355)
Q Consensus 128 iDl~~lh~p~~~~~-~---~~~~~~L~~-l--------------~~~Gkir~iGvS~------~~~~~l~~~~~~~~~~~ 182 (355)
++++.+|.|..... . +.+++.+-+ + ...++|--||.++ .+..+++++++..++.+
T Consensus 117 ~pVi~v~t~~f~g~~~~g~~~~l~~lv~~~~~~~~~~~~~~~~~~~~~~VNIIG~~~l~f~~~~Dl~eikrLL~~~Gi~v 196 (513)
T CHL00076 117 SDVILADVNHYRVNELQAADRTLEQIVRFYLEKARKQGTLDQSKTDKPSVNIIGIFTLGFHNQHDCRELKRLLQDLGIEI 196 (513)
T ss_pred CCEEEeCCCCCcccHHHHHHHHHHHHHHHHhhcccccccccccCCCCCcEEEEecCCCCCCCcchHHHHHHHHHHCCCeE
Confidence 68999999955432 1 222322221 1 1235688888764 35678888888877666
Q ss_pred ecc----------------ccccccc-hhhhchHHHHH-HhCCcEEecccCC
Q 018482 183 LQM----------------EWSLWTR-AIEDEIVPLCR-ELGIGIVPYSPLG 216 (355)
Q Consensus 183 ~q~----------------~~n~~~~-~~~~~~~~~~~-~~gi~v~a~spl~ 216 (355)
+.+ ..|+... .....+.++.+ +.|++++...|++
T Consensus 197 n~v~~~g~sl~di~~~~~A~~NIvl~~~~g~~~A~~Le~~fgiP~i~~~PiG 248 (513)
T CHL00076 197 NQIIPEGGSVEDLKNLPKAWFNIVPYREVGLMTAKYLEKEFGMPYISTTPMG 248 (513)
T ss_pred EEEECCCCCHHHHHhcccCcEEEEechhhhHHHHHHHHHHhCCCeEeeccCC
Confidence 532 2233221 11133444444 4589988777774
No 235
>TIGR01290 nifB nitrogenase cofactor biosynthesis protein NifB. This model describes NifB, a protein required for the biosynthesis of the iron-molybdenum (or iron-vanadium) cofactor used by the nitrogen-fixing enzyme nitrogenase. Archaeal homologs lack the most C-terminal region and score between the trusted and noise cutoffs of this model.
Probab=21.44 E-value=8.1e+02 Score=24.31 Aligned_cols=108 Identities=18% Similarity=0.118 Sum_probs=67.0
Q ss_pred CCCHHHHHHHHHHHHHHcCCCcccEEEeccCC-CCCCHHHHHHHHHHHHHc--CccceeecCCCC---HHHHHHHhhcCC
Q 018482 106 NGTPEYVRACCEASLKRLDVEYIDLYYQHRVD-TTVPIEDTMGELKKLVDE--GKIKYIGLSEAS---PDTIRRAHAVHP 179 (355)
Q Consensus 106 ~~s~~~i~~~~~~sL~~L~~d~iDl~~lh~p~-~~~~~~~~~~~L~~l~~~--Gkir~iGvS~~~---~~~l~~~~~~~~ 179 (355)
..+++.+.+.+++..+.+. .++.+-+-.+. +....+.+++.++.+++. |. .+.+++.. .+.++++.+. .
T Consensus 59 ~Ltpee~~~~i~~v~~~~~--~~~~V~iaG~GEPLl~~e~~~~~l~~~~~~~~~i--~i~lsTNG~~l~e~i~~L~~~-g 133 (442)
T TIGR01290 59 LLTPEQALRKARQVAAEIP--QLSVVGIAGPGDPLANIGKTFQTLELVARQLPDV--KLCLSTNGLMLPEHVDRLVDL-G 133 (442)
T ss_pred cCCHHHHHHHHHHHHHhcC--CCCEEEEecCCCcccCccccHHHHHHHHHhcCCC--eEEEECCCCCCHHHHHHHHHC-C
Confidence 4788899998888877663 34556666653 334456788888888887 43 57777643 5666666554 3
Q ss_pred ceeeccccccccchhhh---------------------------chHHHHHHhCCcEEecccCCcc
Q 018482 180 VTALQMEWSLWTRAIED---------------------------EIVPLCRELGIGIVPYSPLGRG 218 (355)
Q Consensus 180 ~~~~q~~~n~~~~~~~~---------------------------~~~~~~~~~gi~v~a~spl~~G 218 (355)
++.+.+..+-.+...-. +-++.+.+.|+.+....++--|
T Consensus 134 vd~V~islka~d~e~~~~Iy~~v~~~g~~~tG~~~~~il~e~~l~~l~~l~~~G~~v~v~~vlIpG 199 (442)
T TIGR01290 134 VGHVTITINAIDPAVGEKIYPWVWYEGERYTGREAADLLIERQLEGLEKLTERGILVKVNSVLIPG 199 (442)
T ss_pred CCeEEEeccCCCHHHHhhcchhhccccccccCcchHHHHHHHHHHHHHHHHhCCCeEEEEEEeeCC
Confidence 55666555544322111 2244566778877776666544
No 236
>TIGR02666 moaA molybdenum cofactor biosynthesis protein A, bacterial. The model for this family describes molybdenum cofactor biosynthesis protein A, or MoaA, as found in bacteria. It does not include the family of probable functional equivalent proteins from the archaea. MoaA works together with MoaC to synthesize precursor Z from guanine.
Probab=21.43 E-value=6.8e+02 Score=23.43 Aligned_cols=98 Identities=14% Similarity=0.172 Sum_probs=56.0
Q ss_pred CCHHHHHHHHHHHHHcCCCeEeCccCcCCC---ChhHHHHHHHHhcCC-CCCEEEEeeccccccCCCCcccCCCHHHHHH
Q 018482 39 VPDEVGISIIKHAFDQGITFFDTADVYGPN---NANELLVGKALKQFP-REKVQLATKFGVVKFDVSGLVINGTPEYVRA 114 (355)
Q Consensus 39 ~~~~~~~~~l~~A~~~Gi~~~DtA~~Yg~~---g~sE~~lg~~L~~~~-R~~~~i~tK~~~~~~~~~~~~~~~s~~~i~~ 114 (355)
++.++..++++.+.+.|+..|.-+. |.. ..-.+++..+ ++.+ -+++.|+|-.. . +.+
T Consensus 43 ls~eei~~~i~~~~~~gv~~V~ltG--GEPll~~~l~~li~~i-~~~~gi~~v~itTNG~-l---------------l~~ 103 (334)
T TIGR02666 43 LTFEEIERLVRAFVGLGVRKVRLTG--GEPLLRKDLVELVARL-AALPGIEDIALTTNGL-L---------------LAR 103 (334)
T ss_pred CCHHHHHHHHHHHHHCCCCEEEEEC--ccccccCCHHHHHHHH-HhcCCCCeEEEEeCch-h---------------HHH
Confidence 6889999999999999998887532 210 1223333332 2222 22567777421 1 112
Q ss_pred HHHHHHHHcCCCcccEEEeccCCCC---------CCHHHHHHHHHHHHHcCc
Q 018482 115 CCEASLKRLDVEYIDLYYQHRVDTT---------VPIEDTMGELKKLVDEGK 157 (355)
Q Consensus 115 ~~~~sL~~L~~d~iDl~~lh~p~~~---------~~~~~~~~~L~~l~~~Gk 157 (355)
.-+.|.+.|++++- +-++..+++ ..++++++.++.+++.|.
T Consensus 104 -~~~~L~~~gl~~v~-ISld~~~~~~~~~i~~~~~~~~~vl~~i~~l~~~G~ 153 (334)
T TIGR02666 104 -HAKDLKEAGLKRVN-VSLDSLDPERFAKITRRGGRLEQVLAGIDAALAAGL 153 (334)
T ss_pred -HHHHHHHcCCCeEE-EecccCCHHHhheeCCCCCCHHHHHHHHHHHHHcCC
Confidence 23446666665443 334444321 246788899999888875
No 237
>PRK12702 mannosyl-3-phosphoglycerate phosphatase; Reviewed
Probab=21.41 E-value=4.2e+02 Score=24.93 Aligned_cols=154 Identities=10% Similarity=0.056 Sum_probs=85.4
Q ss_pred CHHHHHHHHHHHHHcCCCeEeCccCcCCCChhHHHHHHHHhcCCCCCEEEEeeccccccCCCCcccCCCHHHHHHHHHHH
Q 018482 40 PDEVGISIIKHAFDQGITFFDTADVYGPNNANELLVGKALKQFPREKVQLATKFGVVKFDVSGLVINGTPEYVRACCEAS 119 (355)
Q Consensus 40 ~~~~~~~~l~~A~~~Gi~~~DtA~~Yg~~g~sE~~lg~~L~~~~R~~~~i~tK~~~~~~~~~~~~~~~s~~~i~~~~~~s 119 (355)
..+.+.+.|+...+.||.++=++ |+...-+-...++...+..+|+.--+....+. ++.+ . ..
T Consensus 19 ~~~~a~~aL~~Lk~~GI~vVlaT------GRt~~ev~~l~~~Lgl~~p~I~eNGA~I~~p~-----~~~~----~---~~ 80 (302)
T PRK12702 19 SYGAARQALAALERRSIPLVLYS------LRTRAQLEHLCRQLRLEHPFICEDGSAIYVPE-----HYFP----A---GI 80 (302)
T ss_pred CCHHHHHHHHHHHHCCCEEEEEc------CCCHHHHHHHHHHhCCCCeEEEeCCcEEEEcc-----cccc----c---cc
Confidence 44568899999999999987754 22333344444544445577776655433110 0110 0 00
Q ss_pred HHHcCCCcccEEEeccCCCCCCHHHHHHHHHHHHHcCccceeecCCCCHHHHHHHhhcCCcee---ecccccc---ccch
Q 018482 120 LKRLDVEYIDLYYQHRVDTTVPIEDTMGELKKLVDEGKIKYIGLSEASPDTIRRAHAVHPVTA---LQMEWSL---WTRA 193 (355)
Q Consensus 120 L~~L~~d~iDl~~lh~p~~~~~~~~~~~~L~~l~~~Gkir~iGvS~~~~~~l~~~~~~~~~~~---~q~~~n~---~~~~ 193 (355)
...+....+-+.+.... .+..++...|.++.++-..+..|+++++.+++.++.....-.. .|=+|+- +...
T Consensus 81 -~~~~~~~~~~~~~~~lg--~~y~~ir~~L~~l~~~~~~~f~gF~d~t~~ei~~~TGL~~~~A~~A~~Re~SEp~~w~~~ 157 (302)
T PRK12702 81 -LDEQWQHRPPYYVCALG--LPYPCLRHILQQVRQDSHLDLIGFGDWTASELAAATGIPLEEAERAQKREYSEIFSYSGD 157 (302)
T ss_pred -cccccccCCCceEEecC--CCHHHHHHHHHHHHHHhCCCceehhhCCHHHHHHHhCcCHHHHHHHHhccCCcceEecCC
Confidence 00111122223332221 2457888999999999888999999999999877644311111 1112321 1111
Q ss_pred hhhchHHHHHHhCCcEEecccC
Q 018482 194 IEDEIVPLCRELGIGIVPYSPL 215 (355)
Q Consensus 194 ~~~~~~~~~~~~gi~v~a~spl 215 (355)
+..+.+.+++.|+.++--.=|
T Consensus 158 -~~~~~~~~~~~g~~~~~GgRf 178 (302)
T PRK12702 158 -PARLREAFAQQEANLTQHLLR 178 (302)
T ss_pred -HHHHHHHHHHcCCeEEecCce
Confidence 234488889999888754333
No 238
>PRK12581 oxaloacetate decarboxylase; Provisional
Probab=21.37 E-value=8.4e+02 Score=24.50 Aligned_cols=112 Identities=12% Similarity=0.086 Sum_probs=60.2
Q ss_pred CHHHHHHHHHHHHHcCCCeEeCccCcCCCChhHHHHHHHHhcCCC-CCEEEEeeccccccCCCCcccCCCHHHHHHHHHH
Q 018482 40 PDEVGISIIKHAFDQGITFFDTADVYGPNNANELLVGKALKQFPR-EKVQLATKFGVVKFDVSGLVINGTPEYVRACCEA 118 (355)
Q Consensus 40 ~~~~~~~~l~~A~~~Gi~~~DtA~~Yg~~g~sE~~lg~~L~~~~R-~~~~i~tK~~~~~~~~~~~~~~~s~~~i~~~~~~ 118 (355)
+.+-....++.|.+.|+..|=..++-.+-...+..+. +.++... -.+.|+-... +.++.++..+.+++
T Consensus 103 pddvv~~fv~~a~~~Gidi~Rifd~lnd~~n~~~ai~-~ak~~G~~~~~~i~yt~s----------p~~t~~y~~~~a~~ 171 (468)
T PRK12581 103 ADDIVDKFISLSAQNGIDVFRIFDALNDPRNIQQALR-AVKKTGKEAQLCIAYTTS----------PVHTLNYYLSLVKE 171 (468)
T ss_pred cchHHHHHHHHHHHCCCCEEEEcccCCCHHHHHHHHH-HHHHcCCEEEEEEEEEeC----------CcCcHHHHHHHHHH
Confidence 4566777899999999999888776654112333333 3332111 1122222211 13566777776666
Q ss_pred HHHHcCCCcccEEEeccCCCCCCHHHHHHHHHHHHHcCccceeecCCCC
Q 018482 119 SLKRLDVEYIDLYYQHRVDTTVPIEDTMGELKKLVDEGKIKYIGLSEAS 167 (355)
Q Consensus 119 sL~~L~~d~iDl~~lh~p~~~~~~~~~~~~L~~l~~~Gkir~iGvS~~~ 167 (355)
+..+|. |.+.|-..--.....++.+-+..+++... .-||+=.|+
T Consensus 172 -l~~~Ga---d~I~IkDtaG~l~P~~v~~Lv~alk~~~~-~pi~~H~Hn 215 (468)
T PRK12581 172 -LVEMGA---DSICIKDMAGILTPKAAKELVSGIKAMTN-LPLIVHTHA 215 (468)
T ss_pred -HHHcCC---CEEEECCCCCCcCHHHHHHHHHHHHhccC-CeEEEEeCC
Confidence 456775 44555443333444566666666665433 246765554
No 239
>COG1151 6Fe-6S prismane cluster-containing protein [Energy production and conversion]
Probab=21.36 E-value=4.3e+02 Score=27.13 Aligned_cols=96 Identities=17% Similarity=0.148 Sum_probs=51.8
Q ss_pred HHHHHHHHHHHHHcCCCcccEEEeccC---CCCCCHHHHHHHHHHHHHcCccceeec----CCCC--HHHHHHHhhcCCc
Q 018482 110 EYVRACCEASLKRLDVEYIDLYYQHRV---DTTVPIEDTMGELKKLVDEGKIKYIGL----SEAS--PDTIRRAHAVHPV 180 (355)
Q Consensus 110 ~~i~~~~~~sL~~L~~d~iDl~~lh~p---~~~~~~~~~~~~L~~l~~~Gkir~iGv----S~~~--~~~l~~~~~~~~~ 180 (355)
+...+-|++.++..+-.+.+ -|-. .....+.+..+-|-+++++|+||.+.+ ++-. ..-+..+.+..+=
T Consensus 360 ~~~~~vIe~A~e~~~~r~~~---~~~ivvGFs~~~il~a~d~lielI~sGkIKgv~~v~GCd~~~~~~~yvt~~kelipr 436 (576)
T COG1151 360 EDFSEVIEMAIENFKNRKSE---KHKIVVGFSHESILAAADPLIELIASGKIKGVVVVVGCDGLRSGRHYVTLFKELIPR 436 (576)
T ss_pred hhHHHHHHHHHhccCCcccc---cceeEEeecHHHHHHHHHHHHHHHhcCCcceEEEEeeCCCCCCCcccHHHHHHhccc
Confidence 56777888888888876666 1111 011224566778889999999999844 2211 1122223333333
Q ss_pred eeeccccccccchhhhchHHHHHHhCCcEE
Q 018482 181 TALQMEWSLWTRAIEDEIVPLCRELGIGIV 210 (355)
Q Consensus 181 ~~~q~~~n~~~~~~~~~~~~~~~~~gi~v~ 210 (355)
+++-+...=..-. -.-++.|...||+.+
T Consensus 437 D~lVLt~GCgk~~--~~~~~vc~~lGIPpV 464 (576)
T COG1151 437 DILVLTLGCGKYR--FNKADVGDILGIPRV 464 (576)
T ss_pred ceEEEecccchhh--hhhhccccccCCCcc
Confidence 4443322111111 223477888887754
No 240
>COG1880 CdhB CO dehydrogenase/acetyl-CoA synthase epsilon subunit [Energy production and conversion]
Probab=21.26 E-value=5.1e+02 Score=21.92 Aligned_cols=98 Identities=19% Similarity=0.174 Sum_probs=54.9
Q ss_pred CHHHHHHHHHHHHHcCCCeEeCccCcCCCChhH----------HHHHHHHhcC--------CCCCEEEEeeccccccCCC
Q 018482 40 PDEVGISIIKHAFDQGITFFDTADVYGPNNANE----------LLVGKALKQF--------PREKVQLATKFGVVKFDVS 101 (355)
Q Consensus 40 ~~~~~~~~l~~A~~~Gi~~~DtA~~Yg~~g~sE----------~~lg~~L~~~--------~R~~~~i~tK~~~~~~~~~ 101 (355)
+++..+.+++-+-+..+..+-||+.+++ ..| ..++.+|+.. ..-|++|.+-
T Consensus 48 dee~~E~~vKi~ekfnipivaTa~~~~~--~~~~~i~~~~~~lh~it~~l~Dp~w~G~dg~g~yDlviflG--------- 116 (170)
T COG1880 48 DEELLELAVKIIEKFNIPIVATASSMGN--LIGRGIGSEYINLHAITQYLTDPNWPGFDGNGNYDLVIFLG--------- 116 (170)
T ss_pred CHHHHHHHHHHHHhcCCceEecchhhcc--hhhcccccchhHHHHHHHHhcCCCCCCcCCCCCcceEEEEe---------
Confidence 4455555555554555999999999984 222 2334444430 1223443332
Q ss_pred CcccCCCHHHHHHHHHHHHHHcC---CCcccEEEeccCCC---CCCHHHHHHHHHHHHH
Q 018482 102 GLVINGTPEYVRACCEASLKRLD---VEYIDLYYQHRVDT---TVPIEDTMGELKKLVD 154 (355)
Q Consensus 102 ~~~~~~s~~~i~~~~~~sL~~L~---~d~iDl~~lh~p~~---~~~~~~~~~~L~~l~~ 154 (355)
+..+...++-++|+.+. +=.||=++.-+.+- ...-++.+++|++|.+
T Consensus 117 ------~~~yy~sq~Ls~lKhFs~i~tiaId~~Y~pnAd~SFpNl~kde~~~~L~ell~ 169 (170)
T COG1880 117 ------SIYYYLSQVLSGLKHFSNIKTIAIDRYYQPNADYSFPNLSKDEYLAYLDELLD 169 (170)
T ss_pred ------ccHHHHHHHHHHhhhhhcceEEEeccccCcCccccCCCcCHHHHHHHHHHHhc
Confidence 34556777777777765 23444455444432 2334678899988875
No 241
>TIGR00381 cdhD CO dehydrogenase/acetyl-CoA synthase, delta subunit. This is the small subunit of a heterodimer which catalyzes the reaction CO + H2O + Acceptor = CO2 + Reduced acceptor and is involved in the synthesis of acetyl-CoA from CO2 and H2.
Probab=21.17 E-value=7.8e+02 Score=24.04 Aligned_cols=103 Identities=17% Similarity=0.244 Sum_probs=62.8
Q ss_pred HHHHHHHHHHH-----------HHcCCCcccEEEeccCCCC-----CCHHHHHHHHHHHHHcCccc-eeecC---CCCHH
Q 018482 110 EYVRACCEASL-----------KRLDVEYIDLYYQHRVDTT-----VPIEDTMGELKKLVDEGKIK-YIGLS---EASPD 169 (355)
Q Consensus 110 ~~i~~~~~~sL-----------~~L~~d~iDl~~lh~p~~~-----~~~~~~~~~L~~l~~~Gkir-~iGvS---~~~~~ 169 (355)
+.+++.++... +.++ +|++.||.-..+ ...++..+..++..+.=.+- -|+=| ..+++
T Consensus 128 ~~i~~~~~dV~~dP~~wak~~V~~~~---aD~Ialr~~S~DP~~~d~~~~e~a~~vk~V~~av~vPLIL~gsg~~~kD~e 204 (389)
T TIGR00381 128 KPIRMHFEDVMEDPAEWARKCVKEFG---ADMVTIHLISTDPKLDDKSPSEAAKVLEDVLQAVDVPIVIGGSGNPEKDPL 204 (389)
T ss_pred HHHHHHHHHHhcCHHHHHHHHHHHhC---CCEEEEEecCCCccccccCHHHHHHHHHHHHHhCCCCEEEeCCCCCcCCHH
Confidence 55666666655 4454 688888876432 34456777777764543332 22222 45788
Q ss_pred HHHHHhhcC---CceeeccccccccchhhhchHHHHHHhCCcEEecccCCccc
Q 018482 170 TIRRAHAVH---PVTALQMEWSLWTRAIEDEIVPLCRELGIGIVPYSPLGRGF 219 (355)
Q Consensus 170 ~l~~~~~~~---~~~~~q~~~n~~~~~~~~~~~~~~~~~gi~v~a~spl~~G~ 219 (355)
.++.+++.. ++-++-..... + -..+.+.|+++|..+++++|..-|.
T Consensus 205 VLeaaLe~~~G~kpLL~SAt~e~---N-y~~ia~lAk~yg~~Vvv~s~~Din~ 253 (389)
T TIGR00381 205 VLEKAAEVAEGERCLLASANLDL---D-YEKIANAAKKYGHVVLSWTIMDINM 253 (389)
T ss_pred HHHHHHHHhCCCCcEEEecCchh---h-HHHHHHHHHHhCCeEEEEcCCcHHH
Confidence 888877652 33333222111 1 2578999999999999999887443
No 242
>PRK07531 bifunctional 3-hydroxyacyl-CoA dehydrogenase/thioesterase; Validated
Probab=21.10 E-value=7.9e+02 Score=24.68 Aligned_cols=123 Identities=10% Similarity=0.009 Sum_probs=68.9
Q ss_pred cccEEEeccCCCCCCHHHHHHHHHHHHHcCccceeecCCCCHHHHHHHhhcCCceeeccccccccc--------------
Q 018482 127 YIDLYYQHRVDTTVPIEDTMGELKKLVDEGKIKYIGLSEASPDTIRRAHAVHPVTALQMEWSLWTR-------------- 192 (355)
Q Consensus 127 ~iDl~~lh~p~~~~~~~~~~~~L~~l~~~Gkir~iGvS~~~~~~l~~~~~~~~~~~~q~~~n~~~~-------------- 192 (355)
..|+++.--|+...-..+++..+..+...+.|-.-.-|..+...+.+.+......++-.++|+...
T Consensus 80 ~aD~Vieavpe~~~vk~~l~~~l~~~~~~~~iI~SsTsgi~~s~l~~~~~~~~r~~~~hP~nP~~~~~Lvevv~g~~t~~ 159 (495)
T PRK07531 80 GADWIQESVPERLDLKRRVLAEIDAAARPDALIGSSTSGFLPSDLQEGMTHPERLFVAHPYNPVYLLPLVELVGGGKTSP 159 (495)
T ss_pred CCCEEEEcCcCCHHHHHHHHHHHHhhCCCCcEEEEcCCCCCHHHHHhhcCCcceEEEEecCCCcccCceEEEcCCCCCCH
Confidence 468888877765433456777787777767553333344456677666544333444445554321
Q ss_pred hhhhchHHHHHHhCCcEEecccCCcccCCCCCCCCCCCCccccccCCCCCCcchhhhHHH-HHHHHHHHHHcCCCHHHHH
Q 018482 193 AIEDEIVPLCRELGIGIVPYSPLGRGFFGGKASVESLPASSILTWHPRFSGENIDKNKIL-YLRLQKLAEKHECNPAQLA 271 (355)
Q Consensus 193 ~~~~~~~~~~~~~gi~v~a~spl~~G~L~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~l~~la~~~~~s~~qla 271 (355)
.......++++..|-.++.......|++. ...+.. +.+...++++.++++.++-
T Consensus 160 e~~~~~~~~~~~lG~~~v~~~k~~~gfi~-------------------------nrl~~a~~~EA~~L~~~g~~s~~~id 214 (495)
T PRK07531 160 ETIRRAKEILREIGMKPVHIAKEIDAFVG-------------------------DRLLEALWREALWLVKDGIATTEEID 214 (495)
T ss_pred HHHHHHHHHHHHcCCEEEeecCCCcchhH-------------------------HHHHHHHHHHHHHHHHcCCCCHHHHH
Confidence 11144556666777666555445545433 122333 3566677778889988874
Q ss_pred HHH
Q 018482 272 LAW 274 (355)
Q Consensus 272 l~~ 274 (355)
-..
T Consensus 215 ~~~ 217 (495)
T PRK07531 215 DVI 217 (495)
T ss_pred HHH
Confidence 333
No 243
>TIGR02660 nifV_homocitr homocitrate synthase NifV. This family consists of the NifV clade of homocitrate synthases, most of which are found in operons for nitrogen fixation. Members are closely homologous to enzymes that include 2-isopropylmalate synthase, (R)-citramalate synthase, and homocitrate synthases associated with other processes. The homocitrate made by this enzyme becomes a part of the iron-molybdenum cofactor of nitrogenase.
Probab=21.01 E-value=7.4e+02 Score=23.73 Aligned_cols=141 Identities=14% Similarity=0.169 Sum_probs=0.0
Q ss_pred HHHHHHHHHHcCCCcccEEEeccCCCCCCHHHHHHHHHHHHHcCc-cceeecCCCCHHHHHHHhhcCCceeecccccccc
Q 018482 113 RACCEASLKRLDVEYIDLYYQHRVDTTVPIEDTMGELKKLVDEGK-IKYIGLSEASPDTIRRAHAVHPVTALQMEWSLWT 191 (355)
Q Consensus 113 ~~~~~~sL~~L~~d~iDl~~lh~p~~~~~~~~~~~~L~~l~~~Gk-ir~iGvS~~~~~~l~~~~~~~~~~~~q~~~n~~~ 191 (355)
+..+-+.|.++|+++|.+- ....-+.-++.++.+.+.+. .+..+++....+.++.+.+. +++.+.+....-.
T Consensus 25 k~~ia~~L~~~Gv~~IEvG------~p~~~~~~~e~i~~i~~~~~~~~i~~~~r~~~~di~~a~~~-g~~~i~i~~~~Sd 97 (365)
T TIGR02660 25 KLAIARALDEAGVDELEVG------IPAMGEEERAVIRAIVALGLPARLMAWCRARDADIEAAARC-GVDAVHISIPVSD 97 (365)
T ss_pred HHHHHHHHHHcCCCEEEEe------CCCCCHHHHHHHHHHHHcCCCcEEEEEcCCCHHHHHHHHcC-CcCEEEEEEccCH
Q ss_pred chhhh--------------chHHHHHHhCCcEEecccCCcccCCCCCCCCCCCCccccccCCCCCCcchhhhHHHHHHHH
Q 018482 192 RAIED--------------EIVPLCRELGIGIVPYSPLGRGFFGGKASVESLPASSILTWHPRFSGENIDKNKILYLRLQ 257 (355)
Q Consensus 192 ~~~~~--------------~~~~~~~~~gi~v~a~spl~~G~L~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ 257 (355)
..... +.+++++++|+.+....+.+ .....+.+..+.
T Consensus 98 ~~~~~~~~~s~~e~l~~~~~~i~~ak~~g~~v~~~~ed~-----------------------------~r~~~~~l~~~~ 148 (365)
T TIGR02660 98 LQIEAKLRKDRAWVLERLARLVSFARDRGLFVSVGGEDA-----------------------------SRADPDFLVELA 148 (365)
T ss_pred HHHHHHhCcCHHHHHHHHHHHHHHHHhCCCEEEEeecCC-----------------------------CCCCHHHHHHHH
Q ss_pred HHHHHcCCCHHHHHHHHHhhCCCCeeeecCCCCHHHHHHHHhcc
Q 018482 258 KLAEKHECNPAQLALAWILHQGDDVAPIPGTTKIKNLDDNIGSL 301 (355)
Q Consensus 258 ~la~~~~~s~~qlal~~~l~~~~v~~vIvG~~~~~~l~~nl~a~ 301 (355)
+.+.+.|... +..+. -+|..+|.++.+.++.+
T Consensus 149 ~~~~~~Ga~~--------i~l~D----T~G~~~P~~v~~lv~~l 180 (365)
T TIGR02660 149 EVAAEAGADR--------FRFAD----TVGILDPFSTYELVRAL 180 (365)
T ss_pred HHHHHcCcCE--------EEEcc----cCCCCCHHHHHHHHHHH
No 244
>TIGR03070 couple_hipB transcriptional regulator, y4mF family. Members of this family belong to a clade of helix-turn-helix DNA-binding proteins, among the larger family pfam01381 (HTH_3; Helix-turn-helix). Members are similar in sequence to the HipB protein of E. coli. Genes for members of the seed alignment for this protein family were found to be closely linked to genes encoding proteins related to HipA. The HibBA operon appears to have some features in common with toxin-antitoxin post-segregational killing systems.
Probab=20.91 E-value=1e+02 Score=20.01 Aligned_cols=24 Identities=13% Similarity=-0.075 Sum_probs=15.1
Q ss_pred HHHHHHHHHcCCCHHHHHHHHHhh
Q 018482 254 LRLQKLAEKHECNPAQLALAWILH 277 (355)
Q Consensus 254 ~~l~~la~~~~~s~~qlal~~~l~ 277 (355)
+.+.++.++.|+|..++|-+.-++
T Consensus 5 ~~l~~~r~~~gltq~~lA~~~gvs 28 (58)
T TIGR03070 5 MLVRARRKALGLTQADLADLAGVG 28 (58)
T ss_pred HHHHHHHHHcCCCHHHHHHHhCCC
Confidence 455666667777777777554333
No 245
>PF00724 Oxidored_FMN: NADH:flavin oxidoreductase / NADH oxidase family; InterPro: IPR001155 The TIM-barrel fold is a closed barrel structure composed of an eight-fold repeat of beta-alpha units, where the eight parallel beta strands on the inside are covered by the eight alpha helices on the outside []. It is a widely distributed fold which has been found in many enzyme families that catalyse completely unrelated reactions []. The active site is always found at the C-terminal end of this domain. Proteins in this entry are a variety of NADH:flavin oxidoreductase/NADH oxidase enzymes, found mostly in bacteria or fungi, that contain a TIM-barrel fold. They commonly use FMN/FAD as cofactor and include: dimethylamine dehydrogenase trimethylamine dehydrogenase 12-oxophytodienoate reductase NADPH dehydrogenase NADH oxidase ; GO: 0010181 FMN binding, 0016491 oxidoreductase activity, 0055114 oxidation-reduction process; PDB: 3GKA_B 3P67_A 3F03_K 2ABA_A 1VYR_A 1GVO_A 3KFT_B 3P8I_A 1GVQ_A 3P74_A ....
Probab=20.74 E-value=5.1e+02 Score=24.55 Aligned_cols=140 Identities=17% Similarity=0.201 Sum_probs=74.6
Q ss_pred CCHHHHHHHHH-------HHHHcCCCeEeCc-------------------cCcCCCChhH---HHHHHHHhcC---CCCC
Q 018482 39 VPDEVGISIIK-------HAFDQGITFFDTA-------------------DVYGPNNANE---LLVGKALKQF---PREK 86 (355)
Q Consensus 39 ~~~~~~~~~l~-------~A~~~Gi~~~DtA-------------------~~Yg~~g~sE---~~lg~~L~~~---~R~~ 86 (355)
++.++..++++ .|.++|+.-++-- +.|| |+-| +++-+.++.. -.++
T Consensus 139 mt~~eI~~ii~~f~~AA~~A~~AGfDGVEIH~ahGyLl~qFLSp~~N~RtDeYG--Gs~ENR~Rf~~Eii~aIr~~vg~d 216 (341)
T PF00724_consen 139 MTEEEIEEIIEDFAQAARRAKEAGFDGVEIHAAHGYLLSQFLSPLTNRRTDEYG--GSLENRARFLLEIIEAIREAVGPD 216 (341)
T ss_dssp --HHHHHHHHHHHHHHHHHHHHTT-SEEEEEESTTSHHHHHHSTTT---SSTTS--SSHHHHHHHHHHHHHHHHHHHTGG
T ss_pred CCHHHHHHHHHHHHHHHHHHHHhccCeEeecccchhhhhheeeeccCCCchhhh--hhhchhhHHHHHHHHHHHHHhcCC
Confidence 46677666654 3468999987743 3444 4444 2233333321 2356
Q ss_pred EEEEeeccccccCCCCcccCCCHHHHHHHHHHHHHHcCCCcccEE---EeccCC--CCC--CH--HHHHHHHHHHHHcCc
Q 018482 87 VQLATKFGVVKFDVSGLVINGTPEYVRACCEASLKRLDVEYIDLY---YQHRVD--TTV--PI--EDTMGELKKLVDEGK 157 (355)
Q Consensus 87 ~~i~tK~~~~~~~~~~~~~~~s~~~i~~~~~~sL~~L~~d~iDl~---~lh~p~--~~~--~~--~~~~~~L~~l~~~Gk 157 (355)
+.|..|+.......+ ..+.+.. ..+-+.++.+++|.+++. ++|+.. ... .. .-.+...+.+++.-+
T Consensus 217 ~~v~~Rls~~~~~~~----g~~~~e~-~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~ik~~~~ 291 (341)
T PF00724_consen 217 FPVGVRLSPDDFVEG----GITLEET-IEIAKLLEELGVDFLDVSHGSYVHWSEPRPSPPFDFEPGYNLDLAEAIKKAVK 291 (341)
T ss_dssp GEEEEEEETTCSSTT----SHHSHHH-HHHHHHHHHHHHTTEEEEEESEEEEEBTSSTTTTTTTTTTTHHHHHHHHHHHS
T ss_pred ceEEEEEeeecccCC----CCchHHH-HHHHHHHHHHhhhhccccccccccccccccccccccccchhhhhhhhhhhhcC
Confidence 778888876543211 1222323 334566788888877653 234322 111 11 112234455555556
Q ss_pred cceeecCCCCHHH-HHHHhhcCCceeecc
Q 018482 158 IKYIGLSEASPDT-IRRAHAVHPVTALQM 185 (355)
Q Consensus 158 ir~iGvS~~~~~~-l~~~~~~~~~~~~q~ 185 (355)
+--|++..++..+ .+++++....|.+-+
T Consensus 292 ~pvi~~G~i~~~~~ae~~l~~g~~DlV~~ 320 (341)
T PF00724_consen 292 IPVIGVGGIRTPEQAEKALEEGKADLVAM 320 (341)
T ss_dssp SEEEEESSTTHHHHHHHHHHTTSTSEEEE
T ss_pred ceEEEEeeecchhhhHHHHhcCCceEeec
Confidence 6778888886654 778887777777655
No 246
>TIGR00238 KamA family protein. Note that the E. coli homolog was expressed in E. coli and purified and found not to display display lysine 2,3-aminomutase activity. Active site residues are found in 100 residue extension in B. subtilis. Name changed to KamA family protein.
Probab=20.68 E-value=7.2e+02 Score=23.48 Aligned_cols=74 Identities=14% Similarity=0.103 Sum_probs=41.3
Q ss_pred HHHHHHHHHHcCccceeecCC---------CCHHHHHHHhhcCCceeecc-cccccc--chhhhchHHHHHHhCCcEEec
Q 018482 145 TMGELKKLVDEGKIKYIGLSE---------ASPDTIRRAHAVHPVTALQM-EWSLWT--RAIEDEIVPLCRELGIGIVPY 212 (355)
Q Consensus 145 ~~~~L~~l~~~Gkir~iGvS~---------~~~~~l~~~~~~~~~~~~q~-~~n~~~--~~~~~~~~~~~~~~gi~v~a~ 212 (355)
+.+.++.+.+-+.++.|.++. .+.+ +.+.++..+...+++ ..|.-. .....+.++.+++.|+.+...
T Consensus 178 L~~ll~~L~~i~~~~~IRi~tr~~~~~P~rit~e-l~~~L~~~~~~~~~vsh~nh~~Ei~~~~~~ai~~L~~aGi~v~~q 256 (331)
T TIGR00238 178 LEWLLKRLEEIPHLVRLRIGTRLPVVIPQRITDE-LCELLASFELQLMLVTHINHCNEITEEFAEAMKKLRTVNVTLLNQ 256 (331)
T ss_pred HHHHHHHHHhcCCccEEEeecCCCccCchhcCHH-HHHHHHhcCCcEEEEccCCChHhCCHHHHHHHHHHHHcCCEEEee
Confidence 455666666656555554432 2333 333444434333333 244321 111156677789999999999
Q ss_pred ccCCccc
Q 018482 213 SPLGRGF 219 (355)
Q Consensus 213 spl~~G~ 219 (355)
+++..|.
T Consensus 257 tvLl~gv 263 (331)
T TIGR00238 257 SVLLRGV 263 (331)
T ss_pred cceECCc
Confidence 9998875
No 247
>PTZ00413 lipoate synthase; Provisional
Probab=20.53 E-value=8.1e+02 Score=23.99 Aligned_cols=158 Identities=15% Similarity=0.251 Sum_probs=83.2
Q ss_pred CCHHHHHHHHHHHHHcCCCeEeCccCcCC---CChhHHHHHHHHhcCCC--CCEEEEeeccccccCCCCcccCCCHHHHH
Q 018482 39 VPDEVGISIIKHAFDQGITFFDTADVYGP---NNANELLVGKALKQFPR--EKVQLATKFGVVKFDVSGLVINGTPEYVR 113 (355)
Q Consensus 39 ~~~~~~~~~l~~A~~~Gi~~~DtA~~Yg~---~g~sE~~lg~~L~~~~R--~~~~i~tK~~~~~~~~~~~~~~~s~~~i~ 113 (355)
.|.++..++-+++.+.|++|+=.+...++ ++.++ .+.+.++.++. .++.|..=++-.. .+.+
T Consensus 177 lD~eEp~~vA~av~~~Gl~~~VVTSv~RDDL~D~ga~-~~a~~I~~Ir~~~p~~~IevligDf~---------g~~e--- 243 (398)
T PTZ00413 177 LDPNEPEKVAKAVAEMGVDYIVMTMVDRDDLPDGGAS-HVARCVELIKESNPELLLEALVGDFH---------GDLK--- 243 (398)
T ss_pred CCHHHHHHHHHHHHHcCCCEEEEEEEcCCCCChhhHH-HHHHHHHHHHccCCCCeEEEcCCccc---------cCHH---
Confidence 58888888888889999997765554442 12233 34455554332 3455555444221 1222
Q ss_pred HHHHHHHHHcCCCcccEEEeccCCC-----------CCCHHHHHHHHHHHHHc--Cccc-----eeecCCCCHHHHHHHh
Q 018482 114 ACCEASLKRLDVEYIDLYYQHRVDT-----------TVPIEDTMGELKKLVDE--GKIK-----YIGLSEASPDTIRRAH 175 (355)
Q Consensus 114 ~~~~~sL~~L~~d~iDl~~lh~p~~-----------~~~~~~~~~~L~~l~~~--Gkir-----~iGvS~~~~~~l~~~~ 175 (355)
+|+.|.---+|. +-|+.+. ...+++.|+.|+..++. +.|. -+|+.- +.+++.+++
T Consensus 244 -----~l~~L~eAG~dv-ynHNLETv~rLyp~VRt~~atYe~sLe~Lr~AKe~f~~gi~tcSGiIVGLGE-T~eEvie~m 316 (398)
T PTZ00413 244 -----SVEKLANSPLSV-YAHNIECVERITPYVRDRRASYRQSLKVLEHVKEFTNGAMLTKSSIMLGLGE-TEEEVRQTL 316 (398)
T ss_pred -----HHHHHHhcCCCE-EecccccCHhHHHHHccCcCCHHHHHHHHHHHHHHhcCCceEeeeeEecCCC-CHHHHHHHH
Confidence 233332222333 3455421 12578889999888864 2222 245544 333333332
Q ss_pred h---cCCceeecc-ccc-------cccc----hhhhchHHHHHHhCCcEEecccCC
Q 018482 176 A---VHPVTALQM-EWS-------LWTR----AIEDEIVPLCRELGIGIVPYSPLG 216 (355)
Q Consensus 176 ~---~~~~~~~q~-~~n-------~~~~----~~~~~~~~~~~~~gi~v~a~spl~ 216 (355)
. ..+++++.+ +|= +..+ ..-..+-+++.+.|...++..||-
T Consensus 317 ~dLrelGVDivtIGQYL~Ps~~h~~V~~yv~P~~F~~~~~~a~~~Gf~~v~sgPlV 372 (398)
T PTZ00413 317 RDLRTAGVSAVTLGQYLQPTKTRLKVSRYAHPKEFEMWEEEAMKMGFLYCASGPLV 372 (398)
T ss_pred HHHHHcCCcEEeeccccCCCcccCCceeccCHHHHHHHHHHHHHcCCceEEecCcc
Confidence 2 244444443 221 1111 111567777888899999998985
No 248
>COG0820 Predicted Fe-S-cluster redox enzyme [General function prediction only]
Probab=20.46 E-value=4.8e+02 Score=25.06 Aligned_cols=88 Identities=9% Similarity=0.158 Sum_probs=0.0
Q ss_pred EEeccC-----------CCCCCHHHHHHHHHHHHHcCccceeec----------CCCCHHHHHHHhhcCCceeecccccc
Q 018482 131 YYQHRV-----------DTTVPIEDTMGELKKLVDEGKIKYIGL----------SEASPDTIRRAHAVHPVTALQMEWSL 189 (355)
Q Consensus 131 ~~lh~p-----------~~~~~~~~~~~~L~~l~~~Gkir~iGv----------S~~~~~~l~~~~~~~~~~~~q~~~n~ 189 (355)
+-||.| ....++++.+++.+....... +.|-+ +...++++.+++...+-.++-++||+
T Consensus 216 iSLHa~nd~lR~~L~Pink~~~~e~l~~a~r~Y~~~t~-~rVt~EY~Ll~~VND~~e~A~~L~~ll~~~~~~VNLIP~Np 294 (349)
T COG0820 216 ISLHAPNDELRDQLMPINKKYPIEELLEAIRYYPEKSG-RRVTFEYVLLDGVNDSLEHAKELAKLLKGIPCKVNLIPYNP 294 (349)
T ss_pred EecCCCCHHHHhhhhccccCCCHHHHHHHHHhhhhccC-ceEEEEeeecccccCCHHHHHHHHHHhcCCCceEEEeecCC
Q ss_pred ccchh--------hhchHHHHHHhCCcEEecccCCccc
Q 018482 190 WTRAI--------EDEIVPLCRELGIGIVPYSPLGRGF 219 (355)
Q Consensus 190 ~~~~~--------~~~~~~~~~~~gi~v~a~spl~~G~ 219 (355)
..... -....+...++||.+.....-+..+
T Consensus 295 ~~~~~y~r~~~~~i~~F~~~L~~~gv~~tvR~~~g~DI 332 (349)
T COG0820 295 VPGSDYERSSKERIRKFLKILKKAGVLVTVRKTRGDDI 332 (349)
T ss_pred CCCCCccCCcHHHHHHHHHHHHhCCeeEEecccccccc
No 249
>PRK05718 keto-hydroxyglutarate-aldolase/keto-deoxy-phosphogluconate aldolase; Provisional
Probab=20.46 E-value=5.9e+02 Score=22.48 Aligned_cols=52 Identities=13% Similarity=0.107 Sum_probs=36.7
Q ss_pred CHHHHHHHHHHHHHcCCCeEeCccCcCCCChhHHHHHHHHhcCCCCCEEEEeecc
Q 018482 40 PDEVGISIIKHAFDQGITFFDTADVYGPNNANELLVGKALKQFPREKVQLATKFG 94 (355)
Q Consensus 40 ~~~~~~~~l~~A~~~Gi~~~DtA~~Yg~~g~sE~~lg~~L~~~~R~~~~i~tK~~ 94 (355)
+.+++.++.+.+++.|++.|+.+-... ...+.+...-++.++--+-.-|++.
T Consensus 25 ~~~~a~~i~~al~~~Gi~~iEitl~~~---~~~~~I~~l~~~~p~~~IGAGTVl~ 76 (212)
T PRK05718 25 KLEDAVPLAKALVAGGLPVLEVTLRTP---AALEAIRLIAKEVPEALIGAGTVLN 76 (212)
T ss_pred CHHHHHHHHHHHHHcCCCEEEEecCCc---cHHHHHHHHHHHCCCCEEEEeeccC
Confidence 789999999999999999999874333 3667776655545543344555543
No 250
>PRK00396 rnpA ribonuclease P; Reviewed
Probab=20.40 E-value=4.7e+02 Score=21.17 Aligned_cols=49 Identities=10% Similarity=0.030 Sum_probs=33.9
Q ss_pred CCHHHHHHHHHHHHHHcC--CCcccEEEeccCCCC-CCHHHHHHHHHHHHHc
Q 018482 107 GTPEYVRACCEASLKRLD--VEYIDLYYQHRVDTT-VPIEDTMGELKKLVDE 155 (355)
Q Consensus 107 ~s~~~i~~~~~~sL~~L~--~d~iDl~~lh~p~~~-~~~~~~~~~L~~l~~~ 155 (355)
..+..+++.+.++.+... +.-.|++++-.+... .+..++.+.|..|.+.
T Consensus 61 V~RNRiKR~lRE~fR~~~~~l~g~DiVviaR~~~~~~~~~~l~~~l~~ll~k 112 (130)
T PRK00396 61 VDRNRLKRLIRESFRLNQHSLAGWDIVVVARKGLGELENPELHQQFGKLWKR 112 (130)
T ss_pred hHHHHHHHHHHHHHHHhhccCCCeeEEEEeCCCcccCCHHHHHHHHHHHHHH
Confidence 457888888888887654 345799999988653 4556666666665443
No 251
>KOG3445 consensus Mitochondrial/chloroplast ribosomal protein 36a [Translation, ribosomal structure and biogenesis]
Probab=20.31 E-value=1.5e+02 Score=24.25 Aligned_cols=83 Identities=18% Similarity=0.217 Sum_probs=59.1
Q ss_pred HHHHHhcCCCCCEEEEeeccccccCCCCcccCCCHHHHHHHHHHHHHHcCCCcccEEEeccCCCC-CCHHHHHHHHHHHH
Q 018482 75 VGKALKQFPREKVQLATKFGVVKFDVSGLVINGTPEYVRACCEASLKRLDVEYIDLYYQHRVDTT-VPIEDTMGELKKLV 153 (355)
Q Consensus 75 lg~~L~~~~R~~~~i~tK~~~~~~~~~~~~~~~s~~~i~~~~~~sL~~L~~d~iDl~~lh~p~~~-~~~~~~~~~L~~l~ 153 (355)
+|++..+.+| |+-+++.+- .|...+++-++.-|..|+-+..++...-.+... .+ .|..-+
T Consensus 16 lgryv~ql~r----it~sfCnwg---------gSSrGmR~Fle~~L~~~a~enP~v~i~v~~rrg~hP------~lraeY 76 (145)
T KOG3445|consen 16 LGRYVWQLRR----ITVSFCNWG---------GSSRGMREFLESELPDLARENPGVVIYVEPRRGQHP------LLRAEY 76 (145)
T ss_pred hhhhhheeeE----EEEEEecCC---------CccHHHHHHHHHHHHHHHhhCCCeEEEEeccCCCCc------eEEEEe
Confidence 6777776555 555655542 466789999999999999888888776665433 12 123445
Q ss_pred HcCccceeecCCCCHHHHHHHhh
Q 018482 154 DEGKIKYIGLSEASPDTIRRAHA 176 (355)
Q Consensus 154 ~~Gkir~iGvS~~~~~~l~~~~~ 176 (355)
-.|..+-|.+-|.+.+++...+.
T Consensus 77 ~NGre~vicvrnms~eevs~~~~ 99 (145)
T KOG3445|consen 77 LNGRERVICVRNMSQEEVSKKAT 99 (145)
T ss_pred cCCceEEEeeccCCHHHHHHHHH
Confidence 67999999999999998776543
No 252
>PF08418 Pol_alpha_B_N: DNA polymerase alpha subunit B N-terminal; InterPro: IPR013627 This is the eukaryotic DNA polymerase alpha subunit B N-terminal domain which is involved in complex formation []. ; PDB: 4E2I_9 2KEB_A 3FLO_G.
Probab=20.26 E-value=1e+02 Score=27.92 Aligned_cols=49 Identities=12% Similarity=0.145 Sum_probs=30.4
Q ss_pred hHHHHHHHHHHHHHcCCCHHHHHHHH---HhhCCCCeeeecCCCCHHHHHHHH
Q 018482 249 NKILYLRLQKLAEKHECNPAQLALAW---ILHQGDDVAPIPGTTKIKNLDDNI 298 (355)
Q Consensus 249 ~~~~~~~l~~la~~~~~s~~qlal~~---~l~~~~v~~vIvG~~~~~~l~~nl 298 (355)
...++.++..||+-|++++.+++..| ++++.. ...-+...+.+.+++.+
T Consensus 8 ~~~vl~kl~slc~~~~ls~edL~~kWeaf~~~~~~-~~~~l~~~~L~~F~~~l 59 (253)
T PF08418_consen 8 DPDVLEKLQSLCRLYNLSAEDLFYKWEAFSLNMQL-DDTKLTLDNLDQFKQYL 59 (253)
T ss_dssp -HHHHHHHHTHHHHST--HHHHHHHHTTHHHHTT--SC----TTTTTGGGTTT
T ss_pred CHHHHHHHHHHHHHhCCCHHHHHHHHHHHHhhcCC-CcCcCCHHHHHHHHHHH
Confidence 46778899999999999999999988 455543 22235555555555554
No 253
>COG1861 SpsF Spore coat polysaccharide biosynthesis protein F, CMP-KDO synthetase homolog [Cell envelope biogenesis, outer membrane]
Probab=20.26 E-value=2.4e+02 Score=25.31 Aligned_cols=81 Identities=15% Similarity=0.186 Sum_probs=51.4
Q ss_pred cccceeccccCCCCCCCCCCHHHHHHHHHHHHHcCCCeEeCccCcCCCChhHHHHHHHHhcC--CCCCEEEEeecccccc
Q 018482 21 VSKLGFGCMGLTGMYNDPVPDEVGISIIKHAFDQGITFFDTADVYGPNNANELLVGKALKQF--PREKVQLATKFGVVKF 98 (355)
Q Consensus 21 vs~lglGt~~~~~~~~~~~~~~~~~~~l~~A~~~Gi~~~DtA~~Yg~~g~sE~~lg~~L~~~--~R~~~~i~tK~~~~~~ 98 (355)
+..+.+-|. +.++-..+...|.+.|+++|= |+.|.++.++..-. ...+++|--+.-...
T Consensus 44 ~d~ivvATS----------~~~~d~~l~~~~~~~G~~vfr--------Gs~~dVL~Rf~~a~~a~~~~~VVRvTGD~P~- 104 (241)
T COG1861 44 LDKIVVATS----------DKEEDDALEEVCRSHGFYVFR--------GSEEDVLQRFIIAIKAYSADVVVRVTGDNPF- 104 (241)
T ss_pred ccceEEEec----------CCcchhHHHHHHHHcCeeEec--------CCHHHHHHHHHHHHHhcCCCeEEEeeCCCCC-
Confidence 455666554 444545677788899999886 66889998888652 234444444432222
Q ss_pred CCCCcccCCCHHHHHHHHHHHHHHcCCCccc
Q 018482 99 DVSGLVINGTPEYVRACCEASLKRLDVEYID 129 (355)
Q Consensus 99 ~~~~~~~~~s~~~i~~~~~~sL~~L~~d~iD 129 (355)
.+++-+...++.-|+. |-||.-
T Consensus 105 --------~dp~l~d~~v~~~l~~-gaDY~s 126 (241)
T COG1861 105 --------LDPELVDAAVDRHLEK-GADYVS 126 (241)
T ss_pred --------CCHHHHHHHHHHHHhc-CCcccc
Confidence 5678777777776654 446643
No 254
>cd03174 DRE_TIM_metallolyase DRE-TIM metallolyase superfamily. The DRE-TIM metallolyase superfamily includes 2-isopropylmalate synthase (IPMS), alpha-isopropylmalate synthase (LeuA), 3-hydroxy-3-methylglutaryl-CoA lyase, homocitrate synthase, citramalate synthase, 4-hydroxy-2-oxovalerate aldolase, re-citrate synthase, transcarboxylase 5S, pyruvate carboxylase, AksA, and FrbC. These members all share a conserved triose-phosphate isomerase (TIM) barrel domain consisting of a core beta(8)-alpha(8) motif with the eight parallel beta strands forming an enclosed barrel surrounded by eight alpha helices. The domain has a catalytic center containing a divalent cation-binding site formed by a cluster of invariant residues that cap the core of the barrel. In addition, the catalytic site includes three invariant residues - an aspartate (D), an arginine (R), and a glutamate (E) - which is the basis for the domain name "DRE-TIM".
Probab=20.20 E-value=6.2e+02 Score=22.48 Aligned_cols=24 Identities=13% Similarity=0.205 Sum_probs=21.8
Q ss_pred CCHHHHHHHHHHHHHcCCCeEeCc
Q 018482 39 VPDEVGISIIKHAFDQGITFFDTA 62 (355)
Q Consensus 39 ~~~~~~~~~l~~A~~~Gi~~~DtA 62 (355)
.+.++..++++...+.||..|+..
T Consensus 16 ~s~e~~~~i~~~L~~~GV~~IEvg 39 (265)
T cd03174 16 FSTEDKLEIAEALDEAGVDSIEVG 39 (265)
T ss_pred CCHHHHHHHHHHHHHcCCCEEEec
Confidence 478999999999999999999976
No 255
>cd07939 DRE_TIM_NifV Streptomyces rubellomurinus FrbC and related proteins, catalytic TIM barrel domain. FrbC (NifV) of Streptomyces rubellomurinus catalyzes the condensation of acetyl-CoA and alpha-ketoglutarate to form homocitrate and CoA, a reaction similar to one catalyzed by homocitrate synthase. The gene encoding FrbC is one of several genes required for the biosynthesis of FR900098, a potent antimalarial antibiotic. This protein is also required for assembly of the nitrogenase MoFe complex but its exact role is unknown. This family also includes the NifV proteins of Heliobacterium chlorum and Gluconacetobacter diazotrophicus, which appear to be orthologous to FrbC. This family belongs to the DRE-TIM metallolyase superfamily. DRE-TIM metallolyases include 2-isopropylmalate synthase (IPMS), alpha-isopropylmalate synthase (LeuA), 3-hydroxy-3-methylglutaryl-CoA lyase, homocitrate synthase, citramalate synthase, 4-hydroxy-2-oxovalerate aldolase, re-citrate synthase, transcarbox
Probab=20.16 E-value=6.4e+02 Score=22.68 Aligned_cols=39 Identities=13% Similarity=0.191 Sum_probs=27.8
Q ss_pred CCHHHHHHHHHHHHHcCCCeEeCcc-CcCCCChhH-HHHHHHHh
Q 018482 39 VPDEVGISIIKHAFDQGITFFDTAD-VYGPNNANE-LLVGKALK 80 (355)
Q Consensus 39 ~~~~~~~~~l~~A~~~Gi~~~DtA~-~Yg~~g~sE-~~lg~~L~ 80 (355)
++.++..++++.-.+.||..|++.. ..+ ..+ +.+....+
T Consensus 17 ~~~~~k~~i~~~L~~~Gv~~iE~g~p~~~---~~~~e~~~~l~~ 57 (259)
T cd07939 17 FSREEKLAIARALDEAGVDEIEVGIPAMG---EEEREAIRAIVA 57 (259)
T ss_pred CCHHHHHHHHHHHHHcCCCEEEEecCCCC---HHHHHHHHHHHh
Confidence 4778889999999999999999962 222 244 45544444
No 256
>COG1751 Uncharacterized conserved protein [Function unknown]
Probab=20.08 E-value=3.3e+02 Score=22.92 Aligned_cols=72 Identities=19% Similarity=0.147 Sum_probs=45.3
Q ss_pred HHHHHHHHHHHHHcCCCeEeCccCcCCCChhHHHHHHHHhcCCCCCEEEEeec-cccccCCCCcccCCCHHHHHHHHHHH
Q 018482 41 DEVGISIIKHAFDQGITFFDTADVYGPNNANELLVGKALKQFPREKVQLATKF-GVVKFDVSGLVINGTPEYVRACCEAS 119 (355)
Q Consensus 41 ~~~~~~~l~~A~~~Gi~~~DtA~~Yg~~g~sE~~lg~~L~~~~R~~~~i~tK~-~~~~~~~~~~~~~~s~~~i~~~~~~s 119 (355)
++..+-.+++|-+.||.+|=.|+.||. +-.-+-+.+.. . =++++.|-- |+.. ...-.+...+++-
T Consensus 13 ~~tle~a~erA~elgik~~vVAS~tG~---tA~k~lemveg-~-lkvVvVthh~Gf~e---------~g~~e~~~E~~~~ 78 (186)
T COG1751 13 DETLEIAVERAKELGIKHIVVASSTGY---TALKALEMVEG-D-LKVVVVTHHAGFEE---------KGTQEMDEEVRKE 78 (186)
T ss_pred HHHHHHHHHHHHhcCcceEEEEecccH---HHHHHHHhccc-C-ceEEEEEeeccccc---------CCceecCHHHHHH
Confidence 344566677888999999999999984 44443444442 1 235555543 3322 2234567778888
Q ss_pred HHHcCCC
Q 018482 120 LKRLDVE 126 (355)
Q Consensus 120 L~~L~~d 126 (355)
|+..|.+
T Consensus 79 L~erGa~ 85 (186)
T COG1751 79 LKERGAK 85 (186)
T ss_pred HHHcCce
Confidence 9998854
No 257
>PRK00087 4-hydroxy-3-methylbut-2-enyl diphosphate reductase/S1 RNA-binding domain protein; Reviewed
Probab=20.08 E-value=4.3e+02 Score=27.68 Aligned_cols=113 Identities=12% Similarity=0.126 Sum_probs=66.3
Q ss_pred HHHHHHcCccceeecCCCCHHHHHHHhhc----C-CceeeccccccccchhhhchHHHHHHhCCcEEecccCCcccCCCC
Q 018482 149 LKKLVDEGKIKYIGLSEASPDTIRRAHAV----H-PVTALQMEWSLWTRAIEDEIVPLCRELGIGIVPYSPLGRGFFGGK 223 (355)
Q Consensus 149 L~~l~~~Gkir~iGvS~~~~~~l~~~~~~----~-~~~~~q~~~n~~~~~~~~~~~~~~~~~gi~v~a~spl~~G~L~g~ 223 (355)
++.+....++-.+--++++.+.++.+.+. . .+.+. -.....+..-+..+.+.+.+.++-++.-++-+. +
T Consensus 147 ~~~~~~~~~~~~~~QTT~~~~~~~~~~~~l~~~~~~~~~~-~tiC~at~~Rq~a~~~la~~~d~~~vvGg~~Ss-----N 220 (647)
T PRK00087 147 AEKLPFDKKICVVSQTTEKQENFEKVLKELKKKGKEVKVF-NTICNATEVRQEAAEKLAKKVDVMIVVGGKNSS-----N 220 (647)
T ss_pred HhhCCCCCCEEEEEcCCCcHHHHHHHHHHHHHhCCCcccC-CCcchhhhhHHHHHHHHHhhCCEEEEECCCCCc-----c
Confidence 33333345555666666777766655443 1 11111 111222222246788888887777765322221 0
Q ss_pred CCCCCCCCccccccCCCCCCcchhhhHHHHHHHHHHHHHcCC------CHHHHHHHHHhhCCCCeeeecCCCCHHHHHHH
Q 018482 224 ASVESLPASSILTWHPRFSGENIDKNKILYLRLQKLAEKHEC------NPAQLALAWILHQGDDVAPIPGTTKIKNLDDN 297 (355)
Q Consensus 224 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~la~~~~~------s~~qlal~~~l~~~~v~~vIvG~~~~~~l~~n 297 (355)
-.+|.++|++.|. ++.++.-.|+-.... ..+..|+|+|+.+-+.
T Consensus 221 -----------------------------t~~L~~i~~~~~~~~~~ie~~~el~~~~~~~~~~-vgitagaStP~~~i~~ 270 (647)
T PRK00087 221 -----------------------------TTKLYEICKSNCTNTIHIENAGELPEEWFKGVKI-IGVTAGASTPDWIIEE 270 (647)
T ss_pred -----------------------------HHHHHHHHHHHCCCEEEECChHHCCHHHhCCCCE-EEEEeccCCCHHHHHH
Confidence 1478888988764 789999999877665 5677899999965444
Done!