BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 018483
(355 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|2PQ6|A Chain A, Crystal Structure Of Medicago Truncatula Ugt85h2- Insights
Into The Structural Basis Of A Multifunctional (Iso)
Flavonoid Glycosyltransferase
Length = 482
Score = 244 bits (623), Expect = 5e-65, Method: Compositional matrix adjust.
Identities = 130/363 (35%), Positives = 205/363 (56%), Gaps = 23/363 (6%)
Query: 11 ISCIVYDSTMCFSQSVADHLKLPGICVRTSPAATMLAFAVFPRLHEQGYISFLESMSL-- 68
++C+V D M F+ A+ +LP + +S A ++L F E+G I F + L
Sbjct: 119 VTCLVSDCCMSFTIQAAEEFELPNVLYFSSSACSLLNVMHFRSFVERGIIPFKDESYLTN 178
Query: 69 -------DRVSDLLSLMLKELAASMKKIT-TDGMLELRAAVADSVKKCSALIVNTVDFLE 120
D + L + LK++ ++ D MLE VAD V K + +++NT + LE
Sbjct: 179 GCLETKVDWIPGLKNFRLKDIVDFIRTTNPNDIMLEFFIEVADRVNKDTTILLNTFNELE 238
Query: 121 QEALTKVQELFSASAFTIGPFHKLVP---------TISGSLLKEDTNCISWLNKQAPKSV 171
+ + + S + IGP L+ ++ +L KEDT C+ WL + P SV
Sbjct: 239 SDVINALSSTI-PSIYPIGPLPSLLKQTPQIHQLDSLDSNLWKEDTECLDWLESKEPGSV 297
Query: 172 IYVSFGSIASIDEKELLETAWGLANCEQPFLWVVRPGLVRGSNCLELLPINFQDSVGERG 231
+YV+FGS + ++LLE AWGLANC++ FLW++RP LV G + + F + + +RG
Sbjct: 298 VYVNFGSTTVMTPEQLLEFAWGLANCKKSFLWIIRPDLVIGGSVI--FSSEFTNEIADRG 355
Query: 232 CIVEWAPQKEVLANDAVGGFWSHCGWNSTLESICEGVPMLCKPFFGDQNLNMRYVCDVWN 291
I W PQ +VL + ++GGF +HCGWNST ESIC GVPMLC PFF DQ + R++C+ W
Sbjct: 356 LIASWCPQDKVLNHPSIGGFLTHCGWNSTTESICAGVPMLCWPFFADQPTDCRFICNEWE 415
Query: 292 VGLELE-EFEGGTIKKAIKRLMVDTEGKEMRKKAIHLKEKVELPLKEGGSCYNSLNDLVK 350
+G+E++ + + K I ++ +GK+M++KA+ LK+K E + GG Y +LN ++K
Sbjct: 416 IGMEIDTNVKREELAKLINEVIAGDKGKKMKQKAMELKKKAEENTRPGGCSYMNLNKVIK 475
Query: 351 KIL 353
+L
Sbjct: 476 DVL 478
>pdb|2C1X|A Chain A, Structure And Activity Of A Flavonoid 3-O
Glucosyltransferase Reveals The Basis For Plant Natural
Product Modification
pdb|2C1Z|A Chain A, Structure And Activity Of A Flavonoid 3-O
Glucosyltransferase Reveals The Basis For Plant Natural
Product Modification
pdb|2C9Z|A Chain A, Structure And Activity Of A Flavonoid 3-0
Glucosyltransferase Reveals The Basis For Plant Natural
Product Modification
Length = 456
Score = 154 bits (390), Expect = 6e-38, Method: Compositional matrix adjust.
Identities = 106/361 (29%), Positives = 179/361 (49%), Gaps = 41/361 (11%)
Query: 11 ISCIVYDSTMCFSQSVADHLKLPGICVRTSPAATMLAFAVFPRLHE-------QG----Y 59
+SC+V D+ + F+ +A + + + T+ ++ + E QG
Sbjct: 113 VSCLVADAFIWFAADMAAEMGVAWLPFWTAGPNSLSTHVYIDEIREKIGVSGIQGREDEL 172
Query: 60 ISFLESMSLDRVSDLL-SLMLKELAASMKKITTDGMLELRAAVADSVKKCSALIVNTVDF 118
++F+ MS R DL ++ L + + ML V + K +A+ +N+ +
Sbjct: 173 LNFIPGMSKVRFRDLQEGIVFGNLNSLFSR-----MLHRMGQV---LPKATAVFINSFEE 224
Query: 119 LEQEALTKVQELFSASAFTIGPFHKLVPTISGSLLKEDTNCISWLNKQAPKSVIYVSFGS 178
L+ ++LT + + IGPF+ + P ++ T C+ WL ++ P SV+Y+SFG+
Sbjct: 225 LD-DSLTNDLKSKLKTYLNIGPFNLITPP---PVVPNTTGCLQWLKERKPTSVVYISFGT 280
Query: 179 IASIDEKELLETAWGLANCEQPFLWVVRPGLVRGSNCLELLPINFQDSVGERGCIVEWAP 238
+ + E++ + L PF+W +R LP F + G +V WAP
Sbjct: 281 VTTPPPAEVVALSEALEASRVPFIWSLR------DKARVHLPEGFLEKTRGYGMVVPWAP 334
Query: 239 QKEVLANDAVGGFWSHCGWNSTLESICEGVPMLCKPFFGDQNLNMRYVCDVWNVGLELEE 298
Q EVLA++AVG F +HCGWNS ES+ GVP++C+PFFGDQ LN R V DV +G+ +
Sbjct: 335 QAEVLAHEAVGAFVTHCGWNSLWESVAGGVPLICRPFFGDQRLNGRMVEDVLEIGVRI-- 392
Query: 299 FEGGTIKKA-----IKRLMVDTEGKEMRKKAIHLKEKVELPLKEGGSC---YNSLNDLVK 350
EGG K+ +++ +GK++R+ L+E + + GS + +L DLV
Sbjct: 393 -EGGVFTKSGLMSCFDQILSQEKGKKLRENLRALRETADRAVGPKGSSTENFITLVDLVS 451
Query: 351 K 351
K
Sbjct: 452 K 452
>pdb|3HBF|A Chain A, Structure Of Ugt78g1 Complexed With Myricetin And Udp
pdb|3HBJ|A Chain A, Structure Of Ugt78g1 Complexed With Udp
Length = 454
Score = 145 bits (365), Expect = 4e-35, Method: Compositional matrix adjust.
Identities = 101/356 (28%), Positives = 166/356 (46%), Gaps = 29/356 (8%)
Query: 10 RISCIVYDSTMCFSQSVADHLKLPGICVRTSPAATMLAFAVF---------PRLHEQGYI 60
I+C+V D+ F +A+ + + + T+ ++L +H+ I
Sbjct: 117 NITCLVTDAFFWFGADLAEEMHAKWVPLWTAGPHSLLTHVYTDLIREKTGSKEVHDVKSI 176
Query: 61 SFLESMSLDRVSDLLSLMLKELAASMKKITTDGMLELRAAVADSVKKCSALIVNTVDFLE 120
L + SDL ++K++ + LEL A A ++ + + +E
Sbjct: 177 DVLPGFPELKASDLPEGVIKDIDVPFATMLHKMGLELPRANAVAINSFATI----HPLIE 232
Query: 121 QEALTKVQELFSASAFTIGPFHKLVPTISGSLLKEDTNCISWLNKQAPKSVIYVSFGSIA 180
E +K + L + +GPF+ P S ++ C+ WL++ SV+Y+SFGS+
Sbjct: 233 NELNSKFKLLLN-----VGPFNLTTPQRKVS---DEHGCLEWLDQHENSSVVYISFGSVV 284
Query: 181 SIDEKELLETAWGLANCEQPFLWVVRPGLVRGSNCLELLPINFQDSVGERGCIVEWAPQK 240
+ EL A L C PF+W R + E LP F + +G IV WAPQ
Sbjct: 285 TPPPHELTALAESLEECGFPFIWSFR------GDPKEKLPKGFLERTKTKGKIVAWAPQV 338
Query: 241 EVLANDAVGGFWSHCGWNSTLESICEGVPMLCKPFFGDQNLNMRYVCDVWNVGLELEE-- 298
E+L + +VG F +H GWNS LE I GVPM+ +PFFGDQ LN V +G+ ++
Sbjct: 339 EILKHSSVGVFLTHSGWNSVLECIVGGVPMISRPFFGDQGLNTILTESVLEIGVGVDNGV 398
Query: 299 FEGGTIKKAIKRLMVDTEGKEMRKKAIHLKEKVELPLKEGGSCYNSLNDLVKKILS 354
+IKKA++ M +G MR+K + LKE +++ G+ L++ + S
Sbjct: 399 LTKESIKKALELTMSSEKGGIMRQKIVKLKESAFKAVEQNGTSAMDFTTLIQIVTS 454
>pdb|2VCE|A Chain A, Characterization And Engineering Of The Bifunctional N-
And O-glucosyltransferase Involved In Xenobiotic
Metabolism In Plants
pdb|2VCH|A Chain A, Characterization And Engineering Of The Bifunctional N-
And O-Glucosyltransferase Involved In Xenobiotic
Metabolism In Plants
pdb|2VG8|A Chain A, Characterization And Engineering Of The Bifunctional N-
And O-Glucosyltransferase Involved In Xenobiotic
Metabolism In Plants
Length = 480
Score = 144 bits (362), Expect = 1e-34, Method: Compositional matrix adjust.
Identities = 88/259 (33%), Positives = 137/259 (52%), Gaps = 20/259 (7%)
Query: 106 KKCSALIVNTVDFLEQEALTKVQE--LFSASAFTIGPFHKLVPTISGSLLKEDTNCISWL 163
K+ ++VNT LE A+ +QE L + +GP + + E++ C+ WL
Sbjct: 205 KEAEGILVNTFFELEPNAIKALQEPGLDKPPVYPVGPLVNIGKQEAKQ--TEESECLKWL 262
Query: 164 NKQAPKSVIYVSFGSIASIDEKELLETAWGLANCEQPFLWVVRP--GLVRGS-------- 213
+ Q SV+YVSFGS ++ ++L E A GLA+ EQ FLWV+R G+ S
Sbjct: 263 DNQPLGSVLYVSFGSGGTLTCEQLNELALGLADSEQRFLWVIRSPSGIANSSYFDSHSQT 322
Query: 214 NCLELLPINFQDSVGERGCIVE-WAPQKEVLANDAVGGFWSHCGWNSTLESICEGVPMLC 272
+ L LP F + +RG ++ WAPQ +VLA+ + GGF +HCGWNSTLES+ G+P++
Sbjct: 323 DPLTFLPPGFLERTKKRGFVIPFWAPQAQVLAHPSTGGFLTHCGWNSTLESVVSGIPLIA 382
Query: 273 KPFFGDQNLNMRYVCDVWNVGLELEEFEGGTIK-----KAIKRLMVDTEGKEMRKKAIHL 327
P + +Q +N + + L + G ++ + +K LM EGK +R K L
Sbjct: 383 WPLYAEQKMNAVLLSEDIRAALRPRAGDDGLVRREEVARVVKGLMEGEEGKGVRNKMKEL 442
Query: 328 KEKVELPLKEGGSCYNSLN 346
KE LK+ G+ +L+
Sbjct: 443 KEAACRVLKDDGTSTKALS 461
>pdb|2ACV|A Chain A, Crystal Structure Of Medicago Truncatula Ugt71g1
pdb|2ACV|B Chain B, Crystal Structure Of Medicago Truncatula Ugt71g1
Length = 463
Score = 117 bits (292), Expect = 1e-26, Method: Compositional matrix adjust.
Identities = 90/277 (32%), Positives = 135/277 (48%), Gaps = 27/277 (9%)
Query: 92 DGMLELRAAVADSVKKCSALIVNTVDFLEQEALTKVQELFS--ASAFTIGPFHKLVPTIS 149
DG +A+ + +IVNT LEQ ++ + + + +GP L +
Sbjct: 196 DGGYIAYYKLAERFRDTKGIIVNTFSDLEQSSIDALYDHDEKIPPIYAVGPLLDLKGQPN 255
Query: 150 GSLLKEDTNCI-SWLNKQAPKSVIYVSFGSIA-SIDEKELLETAWGLANCEQPFLWVVRP 207
L + + I WL++Q KSV+++ FGS+ S ++ E A GL + FLW
Sbjct: 256 PKLDQAQHDLILKWLDEQPDKSVVFLCFGSMGVSFGPSQIREIALGLKHSGVRFLW---- 311
Query: 208 GLVRGSNCLE--LLPINFQD--SVGERGCIVEWAPQKEVLANDAVGGFWSHCGWNSTLES 263
SN E + P F + + +G I WAPQ EVLA+ A+GGF SHCGWNS LES
Sbjct: 312 -----SNSAEKKVFPEGFLEWMELEGKGMICGWAPQVEVLAHKAIGGFVSHCGWNSILES 366
Query: 264 ICEGVPMLCKPFFGDQNLNMRYVCDVWNVGLELE-EFEGGT-------IKKAIKRLMVDT 315
+ GVP+L P + +Q LN + W VGL L ++ G+ I+K +K LM
Sbjct: 367 MWFGVPILTWPIYAEQQLNAFRLVKEWGVGLGLRVDYRKGSDVVAAEEIEKGLKDLM--D 424
Query: 316 EGKEMRKKAIHLKEKVELPLKEGGSCYNSLNDLVKKI 352
+ + KK +KE + +GGS S+ L+ I
Sbjct: 425 KDSIVHKKVQEMKEMSRNAVVDGGSSLISVGKLIDDI 461
>pdb|2ACW|A Chain A, Crystal Structure Of Medicago Truncatula Ugt71g1 Complexed
With Udp-Glucose
pdb|2ACW|B Chain B, Crystal Structure Of Medicago Truncatula Ugt71g1 Complexed
With Udp-Glucose
Length = 465
Score = 117 bits (292), Expect = 1e-26, Method: Compositional matrix adjust.
Identities = 90/277 (32%), Positives = 135/277 (48%), Gaps = 27/277 (9%)
Query: 92 DGMLELRAAVADSVKKCSALIVNTVDFLEQEALTKVQELFS--ASAFTIGPFHKLVPTIS 149
DG +A+ + +IVNT LEQ ++ + + + +GP L +
Sbjct: 196 DGGYIAYYKLAERFRDTKGIIVNTFSDLEQSSIDALYDHDEKIPPIYAVGPLLDLKGQPN 255
Query: 150 GSLLKEDTNCI-SWLNKQAPKSVIYVSFGSIA-SIDEKELLETAWGLANCEQPFLWVVRP 207
L + + I WL++Q KSV+++ FGS+ S ++ E A GL + FLW
Sbjct: 256 PKLDQAQHDLILKWLDEQPDKSVVFLCFGSMGVSFGPSQIREIALGLKHSGVRFLW---- 311
Query: 208 GLVRGSNCLE--LLPINFQD--SVGERGCIVEWAPQKEVLANDAVGGFWSHCGWNSTLES 263
SN E + P F + + +G I WAPQ EVLA+ A+GGF SHCGWNS LES
Sbjct: 312 -----SNSAEKKVFPEGFLEWMELEGKGMICGWAPQVEVLAHKAIGGFVSHCGWNSILES 366
Query: 264 ICEGVPMLCKPFFGDQNLNMRYVCDVWNVGLELE-EFEGGT-------IKKAIKRLMVDT 315
+ GVP+L P + +Q LN + W VGL L ++ G+ I+K +K LM
Sbjct: 367 MWFGVPILTWPIYAEQQLNAFRLVKEWGVGLGLRVDYRKGSDVVAAEEIEKGLKDLM--D 424
Query: 316 EGKEMRKKAIHLKEKVELPLKEGGSCYNSLNDLVKKI 352
+ + KK +KE + +GGS S+ L+ I
Sbjct: 425 KDSIVHKKVQEMKEMSRNAVVDGGSSLISVGKLIDDI 461
>pdb|2O6L|A Chain A, Crystal Structure Of The Udp-Glucuronic Acid Binding
Domain Of The Human Drug Metabolizing
Udp-Glucuronosyltransferase 2b7
pdb|2O6L|B Chain B, Crystal Structure Of The Udp-Glucuronic Acid Binding
Domain Of The Human Drug Metabolizing
Udp-Glucuronosyltransferase 2b7
Length = 170
Score = 49.3 bits (116), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 38/151 (25%), Positives = 62/151 (41%), Gaps = 16/151 (10%)
Query: 171 VIYVSFGS-IASIDEKELLETAWGLANCEQPFLWVVRPGLVRGSNCLELLPINFQDSVGE 229
V+ S GS +++ E+ A LA Q LW N D++G
Sbjct: 23 VVVFSLGSXVSNXTEERANVIASALAQIPQKVLW--------------RFDGNKPDTLGL 68
Query: 230 RGCIVEWAPQKEVLANDAVGGFWSHCGWNSTLESICEGVPMLCKPFFGDQNLNMRYV-CD 288
+ +W PQ ++L + F +H G N E+I G+P + P F DQ N+ +
Sbjct: 69 NTRLYKWIPQNDLLGHPKTRAFITHGGANGIYEAIYHGIPXVGIPLFADQPDNIAHXKAR 128
Query: 289 VWNVGLELEEFEGGTIKKAIKRLMVDTEGKE 319
V ++ + A+KR++ D KE
Sbjct: 129 GAAVRVDFNTXSSTDLLNALKRVINDPSYKE 159
>pdb|2IYA|A Chain A, The Crystal Structure Of Macrolide Glycosyltransferases: A
Blueprint For Antibiotic Engineering
pdb|2IYA|B Chain B, The Crystal Structure Of Macrolide Glycosyltransferases: A
Blueprint For Antibiotic Engineering
Length = 424
Score = 40.8 bits (94), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 16/57 (28%), Positives = 30/57 (52%), Gaps = 2/57 (3%)
Query: 233 IVEWAPQKEVLANDAVGGFWSHCGWNSTLESICEGVPMLCKPFFGDQNLNMRYVCDV 289
+ +W PQ ++L F +H G ST+E++ VPM+ P +Q +N + ++
Sbjct: 309 VHQWVPQLDILTK--ASAFITHAGMGSTMEALSNAVPMVAVPQIAEQTMNAERIVEL 363
>pdb|3OTG|A Chain A, Crystal Structure Of Calg1, Calicheamicin
Glycostyltransferase, Tdp Bound Form
pdb|3OTH|A Chain A, Crystal Structure Of Calg1, Calicheamicin
Glycostyltransferase, Tdp And Calicheamicin Alpha3i
Bound Form
pdb|3OTH|B Chain B, Crystal Structure Of Calg1, Calicheamicin
Glycostyltransferase, Tdp And Calicheamicin Alpha3i
Bound Form
Length = 412
Score = 34.3 bits (77), Expect = 0.12, Method: Compositional matrix adjust.
Identities = 37/139 (26%), Positives = 61/139 (43%), Gaps = 19/139 (13%)
Query: 142 HKLVPTISGSLLKEDTNCISWLN-KQAPKSVIYVSFGSIASIDEKELLETAW-GLANCEQ 199
H+L P E + +WL+ + + ++Y++ G+ +S E+L A GLA +
Sbjct: 218 HELRPVP----FAEQGDLPAWLSSRDTARPLVYLTLGT-SSGGTVEVLRAAIDGLAGLDA 272
Query: 200 PFLWVVRPGLVRGSNCLELLPINFQDSVGERGCIVEWAPQKEVLANDAVGGFWSHCGWNS 259
L P L + L +P N + + W PQ +L + V H G +
Sbjct: 273 DVLVASGPSL--DVSGLGEVPANVR--------LESWVPQAALLPH--VDLVVHHGGSGT 320
Query: 260 TLESICEGVPMLCKPFFGD 278
TL ++ GVP L P+ GD
Sbjct: 321 TLGALGAGVPQLSFPWAGD 339
>pdb|3IA7|A Chain A, Crystal Structure Of Calg4, The Calicheamicin
Glycosyltransferase
pdb|3IA7|B Chain B, Crystal Structure Of Calg4, The Calicheamicin
Glycosyltransferase
Length = 402
Score = 32.7 bits (73), Expect = 0.35, Method: Compositional matrix adjust.
Identities = 39/172 (22%), Positives = 65/172 (37%), Gaps = 19/172 (11%)
Query: 146 PTISGSLLKEDTNCISWLNKQAPKSVIYVSFGSIASIDEKELLETAWGLANCEQPFLWVV 205
PT++G W + V+ VS G+ +E A A + P+ V
Sbjct: 213 PTLTGR-----DGQPGWQPPRPDAPVLLVSLGN--QFNEHPEFFRACAQAFADTPWHVVX 265
Query: 206 RPGLVRGSNCLELLPINFQDSVGERGCIVEWAPQKEVLANDAVGGFWSHCGWNSTLESIC 265
G L LP N + +W P VLA+ +H + LE+
Sbjct: 266 AIGGFLDPAVLGPLPPNVEAH--------QWIPFHSVLAH--ARACLTHGTTGAVLEAFA 315
Query: 266 EGVPMLCKPFFGDQNLNMRYVCDVWNVG--LELEEFEGGTIKKAIKRLMVDT 315
GVP++ P F + +G L ++ E +I++A++RL D+
Sbjct: 316 AGVPLVLVPHFATEAAPSAERVIELGLGSVLRPDQLEPASIREAVERLAADS 367
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.320 0.135 0.411
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 10,215,066
Number of Sequences: 62578
Number of extensions: 398422
Number of successful extensions: 902
Number of sequences better than 100.0: 11
Number of HSP's better than 100.0 without gapping: 8
Number of HSP's successfully gapped in prelim test: 3
Number of HSP's that attempted gapping in prelim test: 882
Number of HSP's gapped (non-prelim): 11
length of query: 355
length of database: 14,973,337
effective HSP length: 100
effective length of query: 255
effective length of database: 8,715,537
effective search space: 2222461935
effective search space used: 2222461935
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 52 (24.6 bits)