Query 018484
Match_columns 355
No_of_seqs 209 out of 1950
Neff 8.2
Searched_HMMs 46136
Date Fri Mar 29 09:24:38 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/018484.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/018484hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 KOG1582 UDP-galactose transpor 100.0 1.2E-51 2.7E-56 364.4 22.7 307 4-313 22-334 (367)
2 PF08449 UAA: UAA transporter 100.0 6.5E-44 1.4E-48 337.0 31.6 290 25-317 2-303 (303)
3 KOG1580 UDP-galactose transpor 100.0 4.7E-45 1E-49 316.8 18.7 296 16-314 6-316 (337)
4 KOG1581 UDP-galactose transpor 100.0 1.1E-42 2.4E-47 313.3 26.2 293 20-315 11-317 (327)
5 KOG1441 Glucose-6-phosphate/ph 100.0 1.3E-35 2.7E-40 276.6 8.7 293 20-320 14-316 (316)
6 PTZ00343 triose or hexose phos 100.0 7.3E-32 1.6E-36 259.4 34.1 285 21-313 47-350 (350)
7 TIGR00817 tpt Tpt phosphate/ph 100.0 3.4E-32 7.4E-37 257.0 30.3 287 23-318 2-300 (302)
8 KOG1583 UDP-N-acetylglucosamin 100.0 5.1E-33 1.1E-37 247.1 11.9 287 24-317 4-320 (330)
9 KOG1444 Nucleotide-sugar trans 100.0 4.3E-31 9.4E-36 241.3 24.2 292 22-321 11-310 (314)
10 KOG1443 Predicted integral mem 100.0 9E-29 2E-33 223.2 20.6 281 24-312 17-316 (349)
11 PF06027 DUF914: Eukaryotic pr 99.9 1.4E-24 3E-29 205.1 27.9 292 21-320 9-314 (334)
12 COG5070 VRG4 Nucleotide-sugar 99.9 8.4E-25 1.8E-29 189.2 14.0 284 32-320 15-305 (309)
13 KOG1442 GDP-fucose transporter 99.9 7.6E-27 1.7E-31 207.5 -0.8 295 24-322 29-338 (347)
14 PLN00411 nodulin MtN21 family 99.9 4.3E-21 9.3E-26 184.6 31.2 284 27-316 17-333 (358)
15 PRK11453 O-acetylserine/cystei 99.9 2.7E-19 5.9E-24 168.8 33.6 275 31-314 12-290 (299)
16 PRK11689 aromatic amino acid e 99.9 1.7E-19 3.7E-24 169.9 28.9 262 36-313 17-289 (295)
17 TIGR00950 2A78 Carboxylate/Ami 99.9 1.2E-19 2.6E-24 167.3 26.9 251 40-306 6-259 (260)
18 PRK10532 threonine and homoser 99.9 7.3E-19 1.6E-23 165.4 30.8 285 14-321 4-291 (293)
19 PRK11272 putative DMT superfam 99.9 1.9E-18 4.2E-23 162.4 30.6 267 31-314 16-288 (292)
20 PRK15430 putative chlorampheni 99.8 1E-17 2.2E-22 157.9 27.8 258 34-312 19-286 (296)
21 TIGR03340 phn_DUF6 phosphonate 99.8 1.3E-16 2.8E-21 149.2 24.1 210 89-308 69-280 (281)
22 PF03151 TPT: Triose-phosphate 99.7 9.1E-17 2E-21 136.3 16.8 142 170-311 1-153 (153)
23 COG0697 RhaT Permeases of the 99.7 1.8E-14 3.8E-19 134.0 31.5 210 89-312 76-288 (292)
24 PF04142 Nuc_sug_transp: Nucle 99.7 2.8E-16 6.2E-21 143.5 18.2 212 83-302 17-244 (244)
25 KOG2234 Predicted UDP-galactos 99.7 3.3E-15 7.2E-20 139.1 22.4 234 86-331 95-338 (345)
26 TIGR00803 nst UDP-galactose tr 99.7 1.8E-16 3.9E-21 143.2 11.2 192 107-309 2-222 (222)
27 KOG3912 Predicted integral mem 99.7 9.9E-15 2.2E-19 130.9 19.4 228 82-312 83-335 (372)
28 KOG2765 Predicted membrane pro 99.6 5.6E-15 1.2E-19 137.6 13.0 227 90-319 166-398 (416)
29 TIGR00688 rarD rarD protein. T 99.6 1.6E-12 3.5E-17 119.8 25.5 232 33-286 12-255 (256)
30 KOG2766 Predicted membrane pro 99.6 1.7E-16 3.7E-21 140.5 -2.5 291 40-352 35-333 (336)
31 TIGR00776 RhaT RhaT L-rhamnose 99.5 1.7E-11 3.8E-16 115.1 27.5 206 91-312 67-289 (290)
32 KOG4510 Permease of the drug/m 99.4 2.1E-14 4.6E-19 128.1 -0.2 216 89-314 103-328 (346)
33 COG2962 RarD Predicted permeas 99.3 1.1E-09 2.3E-14 99.9 25.5 211 89-317 78-289 (293)
34 COG5006 rhtA Threonine/homoser 99.3 3.7E-09 7.9E-14 94.3 26.7 259 38-317 27-288 (292)
35 PF00892 EamA: EamA-like trans 98.8 3.7E-08 8E-13 79.7 10.0 123 180-310 2-125 (126)
36 PRK15430 putative chlorampheni 98.7 1.8E-06 3.8E-11 81.4 18.1 139 167-310 6-144 (296)
37 COG2510 Predicted membrane pro 98.7 6.3E-08 1.4E-12 77.7 6.8 134 171-310 5-138 (140)
38 TIGR00688 rarD rarD protein. T 98.6 2.9E-06 6.2E-11 78.1 17.6 137 169-309 2-140 (256)
39 KOG4314 Predicted carbohydrate 98.6 2.4E-07 5.2E-12 79.8 8.0 217 87-314 57-279 (290)
40 PF00892 EamA: EamA-like trans 98.6 4.5E-07 9.7E-12 73.2 9.4 117 35-156 3-125 (126)
41 PF13536 EmrE: Multidrug resis 98.5 4.9E-07 1.1E-11 72.8 8.4 78 81-161 32-110 (113)
42 PF06800 Sugar_transport: Suga 98.4 4.4E-05 9.5E-10 70.2 18.6 204 89-308 51-268 (269)
43 TIGR03340 phn_DUF6 phosphonate 98.3 1.1E-05 2.5E-10 75.3 13.5 133 171-311 3-135 (281)
44 PF13536 EmrE: Multidrug resis 98.3 2.9E-05 6.3E-10 62.4 14.0 103 210-315 7-110 (113)
45 PF05653 Mg_trans_NIPA: Magnes 98.3 1.3E-05 2.8E-10 75.6 13.5 211 86-313 52-294 (300)
46 PRK02971 4-amino-4-deoxy-L-ara 98.2 8E-05 1.7E-09 61.3 15.5 121 169-313 2-124 (129)
47 PLN00411 nodulin MtN21 family 98.1 0.00014 3E-09 70.5 16.2 138 170-312 14-157 (358)
48 COG2962 RarD Predicted permeas 98.0 0.0003 6.6E-09 64.7 15.2 140 167-312 5-145 (293)
49 PRK15051 4-amino-4-deoxy-L-ara 98.0 0.00012 2.6E-09 58.7 10.7 64 91-156 45-108 (111)
50 TIGR00950 2A78 Carboxylate/Ami 97.9 0.00021 4.5E-09 65.6 13.4 114 185-310 5-118 (260)
51 PF08449 UAA: UAA transporter 97.8 0.00059 1.3E-08 64.5 14.6 131 184-321 15-146 (303)
52 PF03151 TPT: Triose-phosphate 97.7 0.00099 2.1E-08 56.0 12.5 66 89-156 87-152 (153)
53 TIGR00817 tpt Tpt phosphate/ph 97.7 0.00092 2E-08 63.0 13.7 124 180-310 13-136 (302)
54 PF04142 Nuc_sug_transp: Nucle 97.7 0.00057 1.2E-08 62.6 11.7 72 246-317 24-95 (244)
55 PRK15051 4-amino-4-deoxy-L-ara 97.6 0.00074 1.6E-08 54.1 10.1 61 250-310 48-108 (111)
56 PRK11272 putative DMT superfam 97.6 0.003 6.4E-08 59.4 15.6 127 174-311 13-141 (292)
57 PTZ00343 triose or hexose phos 97.6 0.0021 4.5E-08 62.1 14.7 139 167-310 47-185 (350)
58 COG2510 Predicted membrane pro 97.5 0.0014 3.1E-08 53.0 10.1 116 36-156 16-138 (140)
59 PRK10452 multidrug efflux syst 97.5 0.0015 3.2E-08 53.0 10.1 63 251-313 42-105 (120)
60 PF06027 DUF914: Eukaryotic pr 97.4 0.004 8.7E-08 59.5 14.2 76 239-315 80-155 (334)
61 PRK11689 aromatic amino acid e 97.4 0.0041 8.9E-08 58.5 14.2 68 89-158 221-288 (295)
62 PRK10532 threonine and homoser 97.4 0.0074 1.6E-07 56.7 15.8 69 88-158 213-282 (293)
63 PRK11453 O-acetylserine/cystei 97.4 0.0068 1.5E-07 57.1 15.5 123 172-310 7-131 (299)
64 PF07857 DUF1632: CEO family ( 97.4 0.00062 1.3E-08 62.3 8.0 83 239-321 55-144 (254)
65 TIGR00776 RhaT RhaT L-rhamnose 97.3 0.0038 8.2E-08 58.7 12.8 131 170-312 2-137 (290)
66 PRK02971 4-amino-4-deoxy-L-ara 97.2 0.0021 4.6E-08 52.9 8.4 71 86-158 50-123 (129)
67 COG0697 RhaT Permeases of the 97.1 0.024 5.2E-07 52.2 15.9 143 167-316 5-148 (292)
68 PRK13499 rhamnose-proton sympo 97.1 0.013 2.9E-07 56.1 14.1 138 167-314 5-156 (345)
69 PRK10452 multidrug efflux syst 97.0 0.0039 8.5E-08 50.5 8.2 72 86-159 33-105 (120)
70 PRK09541 emrE multidrug efflux 96.9 0.014 3.1E-07 46.6 10.2 63 251-313 42-105 (110)
71 COG2076 EmrE Membrane transpor 96.9 0.018 3.9E-07 45.3 10.3 70 86-157 33-103 (106)
72 PF04657 DUF606: Protein of un 96.8 0.054 1.2E-06 45.1 13.5 130 172-308 4-138 (138)
73 KOG2922 Uncharacterized conser 96.7 0.015 3.3E-07 54.4 10.4 217 87-314 67-309 (335)
74 PRK11431 multidrug efflux syst 96.7 0.013 2.7E-07 46.4 8.5 68 87-156 33-101 (105)
75 PRK10650 multidrug efflux syst 96.7 0.012 2.6E-07 46.8 8.1 66 88-155 40-106 (109)
76 PRK10650 multidrug efflux syst 96.6 0.08 1.7E-06 42.2 12.3 59 251-309 47-106 (109)
77 PRK09541 emrE multidrug efflux 96.5 0.017 3.6E-07 46.2 8.0 69 88-158 35-104 (110)
78 PF05653 Mg_trans_NIPA: Magnes 96.4 0.027 5.9E-07 53.2 10.4 121 166-313 4-124 (300)
79 PRK13499 rhamnose-proton sympo 96.4 0.9 2E-05 43.7 20.6 220 89-312 79-342 (345)
80 PRK11431 multidrug efflux syst 96.3 0.049 1.1E-06 43.1 9.7 60 251-310 41-101 (105)
81 COG2076 EmrE Membrane transpor 96.2 0.057 1.2E-06 42.5 9.1 62 251-312 42-104 (106)
82 KOG4510 Permease of the drug/m 96.0 0.003 6.4E-08 57.5 1.2 73 242-314 100-172 (346)
83 KOG2234 Predicted UDP-galactos 95.9 0.7 1.5E-05 44.0 16.9 63 250-312 103-165 (345)
84 KOG2765 Predicted membrane pro 95.9 0.016 3.4E-07 55.3 5.6 76 242-317 162-237 (416)
85 PF06800 Sugar_transport: Suga 95.7 0.13 2.7E-06 47.7 10.7 82 237-318 43-129 (269)
86 COG3238 Uncharacterized protei 95.4 0.49 1.1E-05 39.8 12.4 137 168-310 4-145 (150)
87 PF00893 Multi_Drug_Res: Small 94.7 0.15 3.2E-06 39.3 7.1 53 250-302 40-93 (93)
88 PF00893 Multi_Drug_Res: Small 94.6 0.073 1.6E-06 41.1 5.0 56 91-148 37-93 (93)
89 TIGR00803 nst UDP-galactose tr 94.0 0.22 4.8E-06 44.6 7.7 64 89-154 158-221 (222)
90 KOG1441 Glucose-6-phosphate/ph 93.9 0.43 9.3E-06 45.3 9.4 136 20-159 161-309 (316)
91 COG4975 GlcU Putative glucose 93.6 0.025 5.5E-07 51.0 0.7 208 90-313 66-287 (288)
92 PF10639 UPF0546: Uncharacteri 92.8 0.19 4.2E-06 40.2 4.5 62 92-155 50-112 (113)
93 COG5006 rhtA Threonine/homoser 92.7 2.8 6E-05 38.3 12.1 61 95-157 222-282 (292)
94 PF06379 RhaT: L-rhamnose-prot 92.4 2.3 5E-05 40.5 11.8 143 167-314 5-156 (344)
95 PF10639 UPF0546: Uncharacteri 91.8 0.72 1.6E-05 36.9 6.6 58 251-308 53-111 (113)
96 KOG1581 UDP-galactose transpor 89.4 4.8 0.0001 37.7 10.7 75 242-316 86-160 (327)
97 COG4975 GlcU Putative glucose 88.7 0.13 2.7E-06 46.6 -0.1 81 241-321 61-146 (288)
98 KOG1580 UDP-galactose transpor 88.4 0.65 1.4E-05 41.8 4.2 67 247-313 93-159 (337)
99 KOG3912 Predicted integral mem 87.2 2 4.4E-05 39.8 6.7 67 247-313 94-160 (372)
100 KOG4314 Predicted carbohydrate 86.4 0.52 1.1E-05 41.3 2.4 64 251-314 65-128 (290)
101 PF07168 Ureide_permease: Urei 85.0 0.52 1.1E-05 44.0 1.8 68 243-313 76-148 (336)
102 KOG1444 Nucleotide-sugar trans 79.7 31 0.00066 32.7 11.3 138 171-313 14-151 (314)
103 PF04657 DUF606: Protein of un 78.2 37 0.00081 28.0 12.8 113 39-154 17-138 (138)
104 KOG1583 UDP-N-acetylglucosamin 71.9 32 0.0007 32.1 9.0 121 36-158 177-315 (330)
105 PF05297 Herpes_LMP1: Herpesvi 70.6 1.4 3E-05 40.7 0.0 95 107-206 47-142 (381)
106 KOG1623 Multitransmembrane pro 70.3 16 0.00034 33.4 6.7 27 283-309 178-204 (243)
107 PF06084 Cytomega_TRL10: Cytom 68.6 2.2 4.7E-05 33.8 0.7 22 330-351 127-148 (150)
108 PF10225 DUF2215: Uncharacteri 68.4 97 0.0021 28.4 12.3 39 254-292 110-148 (249)
109 KOG2922 Uncharacterized conser 68.0 1.1 2.3E-05 42.3 -1.3 62 250-311 75-136 (335)
110 PLN00028 nitrate transmembrane 64.0 1.6E+02 0.0035 29.3 13.6 63 264-327 381-447 (476)
111 TIGR00910 2A0307_GadC glutamat 63.2 1.8E+02 0.0038 29.6 18.4 16 302-317 450-465 (507)
112 TIGR00939 2a57 Equilibrative N 63.2 33 0.00071 34.2 8.1 22 246-267 117-138 (437)
113 PF14851 FAM176: FAM176 family 61.8 11 0.00025 31.7 3.8 16 297-312 32-47 (153)
114 PRK06638 NADH:ubiquinone oxido 61.3 1.2E+02 0.0025 26.8 13.9 23 282-304 135-157 (198)
115 PHA03049 IMV membrane protein; 59.0 12 0.00026 26.6 2.9 21 295-315 6-26 (68)
116 KOG2766 Predicted membrane pro 58.8 3.5 7.5E-05 37.8 0.2 70 246-315 85-154 (336)
117 TIGR00905 2A0302 transporter, 58.7 2E+02 0.0043 28.7 19.6 23 294-316 417-439 (473)
118 COG5070 VRG4 Nucleotide-sugar 57.3 14 0.00031 33.2 3.8 66 90-157 231-296 (309)
119 PF08507 COPI_assoc: COPI asso 56.6 18 0.0004 29.7 4.2 12 296-307 90-101 (136)
120 PF06679 DUF1180: Protein of u 56.2 9.3 0.0002 32.6 2.4 7 343-349 145-151 (163)
121 PRK13108 prolipoprotein diacyl 56.0 1.1E+02 0.0023 30.9 10.1 23 291-313 254-276 (460)
122 COG2271 UhpC Sugar phosphate p 54.8 17 0.00038 36.0 4.3 35 283-317 176-211 (448)
123 PF14283 DUF4366: Domain of un 54.5 6.4 0.00014 35.3 1.2 19 302-320 170-188 (218)
124 KOG1582 UDP-galactose transpor 53.9 94 0.002 29.0 8.5 45 113-159 290-334 (367)
125 PF05961 Chordopox_A13L: Chord 53.9 17 0.00038 26.0 3.0 23 295-317 6-28 (68)
126 PF04342 DUF486: Protein of un 53.0 14 0.00031 29.0 2.8 28 280-307 77-104 (108)
127 PF03348 Serinc: Serine incorp 50.1 24 0.00053 35.1 4.6 25 290-314 282-306 (429)
128 PF11022 DUF2611: Protein of u 49.2 10 0.00022 27.6 1.4 30 284-313 5-35 (71)
129 PF04971 Lysis_S: Lysis protei 48.8 17 0.00037 26.1 2.4 24 299-322 42-65 (68)
130 COG3115 ZipA Cell division pro 48.4 19 0.00041 33.7 3.2 38 300-337 13-54 (324)
131 PF02694 UPF0060: Uncharacteri 48.3 1.4E+02 0.0029 23.7 7.9 47 267-313 59-105 (107)
132 PRK02935 hypothetical protein; 47.9 66 0.0014 25.3 5.6 40 294-333 43-87 (110)
133 COG3169 Uncharacterized protei 44.9 46 0.001 25.8 4.3 30 279-308 83-112 (116)
134 PF12606 RELT: Tumour necrosis 44.9 27 0.00058 23.6 2.7 15 300-314 12-26 (50)
135 PF05684 DUF819: Protein of un 43.9 3.2E+02 0.0069 26.7 13.1 8 133-140 13-20 (378)
136 PF15345 TMEM51: Transmembrane 43.6 14 0.00031 33.2 1.7 26 296-321 66-91 (233)
137 PF00558 Vpu: Vpu protein; In 41.9 5 0.00011 30.0 -1.2 15 336-350 49-63 (81)
138 PF07423 DUF1510: Protein of u 41.3 27 0.00058 31.3 3.1 19 295-313 18-36 (217)
139 TIGR00806 rfc RFC reduced fola 40.9 2.7E+02 0.0059 28.4 10.4 31 253-283 372-402 (511)
140 PF13994 PgaD: PgaD-like prote 40.7 20 0.00044 29.6 2.1 21 332-352 101-121 (138)
141 PF15471 TMEM171: Transmembran 40.4 19 0.00042 33.1 2.0 26 293-318 161-186 (319)
142 cd01324 cbb3_Oxidase_CcoQ Cyto 39.4 14 0.0003 24.7 0.7 23 298-320 18-40 (48)
143 KOG1479 Nucleoside transporter 38.8 3.9E+02 0.0085 26.4 10.9 43 270-312 159-203 (406)
144 PF15327 Tankyrase_bdg_C: Tank 38.6 14 0.00031 31.5 0.9 23 331-353 63-88 (177)
145 PRK02237 hypothetical protein; 38.4 2E+02 0.0044 22.8 9.8 48 266-313 60-107 (109)
146 PRK03893 putative sialic acid 36.6 4.2E+02 0.0092 26.0 14.9 11 21-31 19-29 (496)
147 PRK01637 hypothetical protein; 35.6 80 0.0017 29.4 5.5 20 293-312 248-267 (286)
148 PF00873 ACR_tran: AcrB/AcrD/A 34.6 3.4E+02 0.0074 30.2 11.0 60 121-183 342-402 (1021)
149 KOG4831 Unnamed protein [Funct 34.5 60 0.0013 25.6 3.6 59 94-155 63-123 (125)
150 PF11446 DUF2897: Protein of u 33.4 29 0.00062 24.0 1.5 16 297-312 6-21 (55)
151 PF07444 Ycf66_N: Ycf66 protei 31.8 31 0.00067 26.0 1.6 26 290-315 4-29 (84)
152 PF01350 Flavi_NS4A: Flaviviru 31.5 3.1E+02 0.0067 22.9 9.2 64 256-324 65-128 (144)
153 PF05545 FixQ: Cbb3-type cytoc 31.2 19 0.00042 23.9 0.4 19 298-316 17-35 (49)
154 PRK02237 hypothetical protein; 29.2 90 0.002 24.7 3.8 33 124-158 74-106 (109)
155 PF06286 Coleoptericin: Coleop 29.2 28 0.0006 28.1 1.0 27 324-350 35-61 (143)
156 TIGR00939 2a57 Equilibrative N 28.6 5.9E+02 0.013 25.3 10.7 14 135-148 70-85 (437)
157 KOG0569 Permease of the major 26.5 6.9E+02 0.015 25.4 10.7 18 285-302 175-192 (485)
158 PF02487 CLN3: CLN3 protein; 26.3 1.4E+02 0.003 29.5 5.5 25 133-157 84-108 (402)
159 PF02694 UPF0060: Uncharacteri 26.2 94 0.002 24.5 3.5 33 124-158 72-104 (107)
160 KOG0847 Transcription factor, 25.9 35 0.00076 30.4 1.2 53 294-347 201-253 (288)
161 KOG3733 Mucolipidin and relate 25.5 55 0.0012 32.3 2.5 19 18-36 411-429 (566)
162 PF06570 DUF1129: Protein of u 25.4 4.6E+02 0.01 23.0 9.0 15 79-93 142-156 (206)
163 PF12794 MscS_TM: Mechanosensi 25.3 4.8E+02 0.01 25.0 9.0 203 143-352 60-294 (340)
164 PF04145 Ctr: Ctr copper trans 25.1 55 0.0012 26.7 2.2 10 292-301 23-32 (144)
165 PLN03078 Putative tRNA pseudou 24.9 44 0.00096 33.9 1.8 20 332-351 272-291 (513)
166 PF01102 Glycophorin_A: Glycop 24.6 24 0.00053 28.6 -0.0 11 307-317 84-94 (122)
167 COG3238 Uncharacterized protei 24.4 4.3E+02 0.0093 22.2 9.2 103 52-155 32-144 (150)
168 PF01528 Herpes_glycop: Herpes 24.1 21 0.00045 34.8 -0.6 37 313-349 337-374 (374)
169 COG4736 CcoQ Cbb3-type cytochr 24.1 57 0.0012 22.9 1.7 22 296-317 15-36 (60)
170 PF02480 Herpes_gE: Alphaherpe 24.0 26 0.00056 35.0 0.0 7 322-328 393-399 (439)
171 PF08552 Kei1: Inositolphospho 23.2 3.2E+02 0.0068 24.0 6.6 10 303-312 93-102 (189)
172 PF01770 Folate_carrier: Reduc 22.7 3.8E+02 0.0082 26.6 7.8 38 246-285 143-180 (412)
173 PRK11715 inner membrane protei 21.8 8.2E+02 0.018 24.5 12.7 56 134-195 326-383 (436)
174 PF10855 DUF2648: Protein of u 21.3 22 0.00048 21.5 -0.7 25 298-322 5-29 (33)
175 TIGR02840 spore_YtaF putative 20.8 1.8E+02 0.004 25.7 4.8 44 264-307 32-77 (206)
176 KOG3375 Phosphoprotein/predict 20.6 43 0.00092 27.9 0.6 23 328-350 44-66 (174)
177 KOG1442 GDP-fucose transporter 20.3 16 0.00035 34.0 -2.1 57 252-308 115-171 (347)
178 KOG0493 Transcription factor E 20.2 61 0.0013 29.7 1.6 29 312-340 220-248 (342)
No 1
>KOG1582 consensus UDP-galactose transporter related protein [Carbohydrate transport and metabolism]
Probab=100.00 E-value=1.2e-51 Score=364.39 Aligned_cols=307 Identities=52% Similarity=0.901 Sum_probs=289.5
Q ss_pred cccc--ceEEeeeCCCCchhHHHHHHHHHHHHHHHHHHHHhhhhhccCCCC-chhHHHHHHHHHHHH--HHHHhcccCCC
Q 018484 4 EEQA--RSLFGVSLSDRPRWQQFLICSSGFFFGYLVNGICEEYVYNRLQFS-YGWYFTFVQGFVYLV--LIYLQGFTTKQ 78 (355)
Q Consensus 4 ~~~~--~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~k~i~~~~~f~-~p~~lt~~Q~~~~~~--~~~~~~~~~~~ 78 (355)
|||+ ++++|++.++.|+|+|+++|..|+|+.|+.||++||+|++..+|+ ++|.+|++|++++.. +.++..+++++
T Consensus 22 ~e~p~ki~llg~~ls~kpkw~QFlic~~g~Ff~Yl~yGy~qElif~~~gfkp~GWylTlvQf~~Ysg~glie~~~~~~k~ 101 (367)
T KOG1582|consen 22 EEQPSKIKLLGFNLSDKPKWTQFLICSAGVFFLYLVYGYLQELIFNVEGFKPFGWYLTLVQFLVYSGFGLIELQLIQTKR 101 (367)
T ss_pred ccCCcceeEEeeccccCchhhhHHHHHhHHHHHHHHHHHHHHHHhccccCcccchHHHHHHHHHHHhhhheEEEeecccc
Confidence 7787 669999999999999999999999999999999999999999996 999999999999854 44567788888
Q ss_pred CCCchHHHHHHHHHHHhhHHHHHHHhhCCChhHHHHHhhcchHHHHHHHhhhcCCccccChhHHHHHHHHHHHHHHHhcc
Q 018484 79 MVNPWKTYVKLSAVLMGSHGLTKGSLAFLNYPAQIMFKSTKVLPVMIMGAFIPGLRRKYPAHEYVAALLLVFGLILFTMA 158 (355)
Q Consensus 79 ~~~~~~~~~~~s~~~~~~~~l~~~sL~~~s~~~~~v~ks~~pi~v~l~~~l~~gl~~~~s~~~~~~l~li~~Gv~l~~~~ 158 (355)
+..|||.|..++++..++++++|.|+.|+|+|++.++|+|+.+|||+.+.++. ++|+++.++.+..++++|+++++.+
T Consensus 102 r~iP~rtY~~la~~t~gtmGLsn~SlgYLNYPtQviFKccKliPVmiggifIq--GkRY~v~d~~aA~lm~lGli~FTLA 179 (367)
T KOG1582|consen 102 RVIPWRTYVILAFLTVGTMGLSNGSLGYLNYPTQVIFKCCKLIPVMIGGIFIQ--GKRYGVHDYIAAMLMSLGLIWFTLA 179 (367)
T ss_pred eecchhHhhhhHhhhhhccccCcCccccccCcHHHHHHhhhhhhhhheeeeec--cccccHHHHHHHHHHHHHHHhhhhc
Confidence 89999999999999999999999999999999999999999999999999995 6899999999999999999999999
Q ss_pred CCCCCCCchhhHHHHHHHHHHHHHhHHHHHHHHHhhCCCCChhhHHHHHHHHhHHHHHHHHHhhchHHHHHHHHhhhhH-
Q 018484 159 DAQTSPNFSLIGVLMISGALVMDSFLGNLQEVIFTVNPDTTQMEMLFCSTVVGLPFLLVPMILTGELVRAWNSCSQHLY- 237 (355)
Q Consensus 159 ~~~~~~~~~~~G~~l~l~s~~~~a~~~v~~~~l~~~~~~~~~~~l~~~~~l~~~~~ll~~~~~~ge~~~~~~~~~~~~~- 237 (355)
|.+.+++|+..|+.++..|+++||+....||+.+++++. +..||++|+..++.++++.++..+||+..+|++..+||.
T Consensus 180 Ds~~sPNF~~~Gv~mIsgALl~DA~iGNvQEk~m~~~~~-ss~EmvfySy~iG~vflf~~mvlTge~f~a~~fcaehp~~ 258 (367)
T KOG1582|consen 180 DSQTSPNFNLIGVMMISGALLADAVIGNVQEKAMKMNPA-SSSEMVFYSYGIGFVFLFAPMVLTGELFSAWTFCAEHPVR 258 (367)
T ss_pred ccccCCCcceeeHHHHHHHHHHHHHhhHHHHHHHhhCCC-CcceEEEeeecccHHHHHHHHHhcccchhhhHHHHhCcHh
Confidence 999999999999999999999999999999999998864 568999999999999998889999999999999988986
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhhchHHHHHHHhHHHHHHHHHHHHHhCCCcccchhhhHHHHHHHHHHHhccC
Q 018484 238 VYGVLVFEAMATFVGQVSVLSLIALFGAATTAMITTARKAVTLFLSYLIFTKPLTEQHGTGLLLIAMGIILKMLPE 313 (355)
Q Consensus 238 ~~~~l~l~~~~~~l~~~~~~~~i~~~sa~t~svv~~~k~v~~i~ls~l~f~~~~t~~~~iG~~lv~~Gv~ly~~~k 313 (355)
...+.++.++.+++|+.+....++.+||.+++.+++.||.+++++|+++|.+|+|.++.-|..+++.|+++..+.|
T Consensus 259 tyGy~~~~s~~gylG~~~VLalI~~fGA~~aatvTTaRKavTi~lSfllFsKPfT~qy~~~gllv~lgI~Ln~ysk 334 (367)
T KOG1582|consen 259 TYGYAFLFSLAGYLGIVFVLALIKLFGALIAATVTTARKAVTILLSFLLFSKPFTEQYVWSGLLVVLGIYLNMYSK 334 (367)
T ss_pred HHHHHHHHHHHhHhhHHHHHHHHHHhchhHHHHHHHhHhHHHHHHHHHHHcCchHHHHhhhhHHHHHHHHhhcccC
Confidence 6778888899999999999999999999999999999999999999999999999999999999999999998887
No 2
>PF08449 UAA: UAA transporter family; InterPro: IPR013657 This family includes transporters with a specificity for UDP-N-acetylglucosamine []. ; GO: 0055085 transmembrane transport
Probab=100.00 E-value=6.5e-44 Score=337.01 Aligned_cols=290 Identities=33% Similarity=0.560 Sum_probs=259.9
Q ss_pred HHHHHHHHHHHHHHHHHhhhhhccCCCC-chhHHHHHHHHHHHHHHHH--hcc-cCCCCCCchHHHHHHHHHHHhhHHHH
Q 018484 25 LICSSGFFFGYLVNGICEEYVYNRLQFS-YGWYFTFVQGFVYLVLIYL--QGF-TTKQMVNPWKTYVKLSAVLMGSHGLT 100 (355)
Q Consensus 25 ~~~~~~i~~~~~~~~~~~k~i~~~~~f~-~p~~lt~~Q~~~~~~~~~~--~~~-~~~~~~~~~~~~~~~s~~~~~~~~l~ 100 (355)
++|++|+|++|+.++++||+++++.... +|++++++|++++.+.... ... ++++++.|+++|++.++++.++..++
T Consensus 2 ~~~~~~i~~~~~~~g~~qE~i~~~~~~~~~~~~lt~~q~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 81 (303)
T PF08449_consen 2 LICVAGIFGGCCSYGILQEKIMTTPYGSPFPLFLTFVQFAFNALFSFILLSLFKFPKSRKIPLKKYAILSFLFFLASVLS 81 (303)
T ss_pred EeeHHHHHHHHHHHHHHHHHHHcCCCCCcccHHHHHHHHHHHHHHHHHHHHhccccCCCcChHHHHHHHHHHHHHHHHHH
Confidence 5789999999999999999999876655 9999999999987665433 222 24557889999999999999999999
Q ss_pred HHHhhCCChhHHHHHhhcchHHHHHHHhhhcCCccccChhHHHHHHHHHHHHHHHhccCCCCCCCc------hhhHHHHH
Q 018484 101 KGSLAFLNYPAQIMFKSTKVLPVMIMGAFIPGLRRKYPAHEYVAALLLVFGLILFTMADAQTSPNF------SLIGVLMI 174 (355)
Q Consensus 101 ~~sL~~~s~~~~~v~ks~~pi~v~l~~~l~~gl~~~~s~~~~~~l~li~~Gv~l~~~~~~~~~~~~------~~~G~~l~ 174 (355)
|.|++|+|+|+++++|+++|+++|++++++ +|||++++++++++++++|++++...|...+.+. ...|++++
T Consensus 82 ~~al~~i~~p~~~~~ks~~~i~vmi~~~l~--~~k~y~~~~~~~v~li~~Gv~~~~~~~~~~~~~~~~~~~~~~~G~~ll 159 (303)
T PF08449_consen 82 NAALKYISYPTQIVFKSSKPIPVMILGVLI--LGKRYSRRQYLSVLLITIGVAIFTLSDSSSSSSSNSSSFSSALGIILL 159 (303)
T ss_pred HHHHHhCChHHHHHHhhhHHHHHHHHHHHh--cCccccHHHHHHHHHHHhhHheeeecccccccccccccccchhHHHHH
Confidence 999999999999999999999999999999 8999999999999999999999998875432211 23499999
Q ss_pred HHHHHHHHhHHHHHHHHHhhCCCCChhhHHHHHHHHhHHHHHHHHHh--hchHHHHHHHHhhhhHHHHHHHHHHHHHHHH
Q 018484 175 SGALVMDSFLGNLQEVIFTVNPDTTQMEMLFCSTVVGLPFLLVPMIL--TGELVRAWNSCSQHLYVYGVLVFEAMATFVG 252 (355)
Q Consensus 175 l~s~~~~a~~~v~~~~l~~~~~~~~~~~l~~~~~l~~~~~ll~~~~~--~ge~~~~~~~~~~~~~~~~~l~l~~~~~~l~ 252 (355)
++|.++||+..++|||++++++. +++++++|++++++++.++..+. .||..+..++...+|..+..+++.+++++++
T Consensus 160 ~~sl~~~a~~~~~qe~~~~~~~~-~~~~~mfy~n~~~~~~~~~~~~~l~~~~~~~~~~f~~~~p~~~~~l~~~s~~~~~g 238 (303)
T PF08449_consen 160 LLSLLLDAFTGVYQEKLFKKYGK-SPWELMFYTNLFSLPFLLILLFLLPTGEFRSAIRFISAHPSVLLYLLLFSLTGALG 238 (303)
T ss_pred HHHHHHHHHHHHHHHHHHHHhCC-cHHHHHHHHHHHHHHHHHHHHHHHHhhHhhHHHHHHHHhHHHHHHHHHHHHHHHHH
Confidence 99999999999999999998854 67999999999999998877776 7888888888888898888888899999999
Q ss_pred HHHHHHHHHhhchHHHHHHHhHHHHHHHHHHHHHhCCCcccchhhhHHHHHHHHHHHhccCCCCC
Q 018484 253 QVSVLSLIALFGAATTAMITTARKAVTLFLSYLIFTKPLTEQHGTGLLLIAMGIILKMLPENKAP 317 (355)
Q Consensus 253 ~~~~~~~i~~~sa~t~svv~~~k~v~~i~ls~l~f~~~~t~~~~iG~~lv~~Gv~ly~~~k~~~~ 317 (355)
+.+++.+++++||++.++++++||++++++|+++|||++++.||+|+++++.|+.+|++.|+|+|
T Consensus 239 ~~~i~~~~~~~~al~~t~v~t~Rk~~sillS~~~f~~~~~~~~~~G~~lv~~g~~~~~~~~~k~~ 303 (303)
T PF08449_consen 239 QFFIFYLIKKFSALTTTIVTTLRKFLSILLSVIIFGHPLSPLQWIGIVLVFAGIFLYSYAKKKKN 303 (303)
T ss_pred HHHHHHHHHhcCchhhhhHHHHHHHHHHHHHHHhcCCcCChHHHHHHHHhHHHHHHHHHhhccCC
Confidence 99999999999999999999999999999999999999999999999999999999999988765
No 3
>KOG1580 consensus UDP-galactose transporter related protein [Carbohydrate transport and metabolism]
Probab=100.00 E-value=4.7e-45 Score=316.78 Aligned_cols=296 Identities=27% Similarity=0.438 Sum_probs=262.4
Q ss_pred CCCchhHHHHHHHHHHHHHHHHHHHHhhhhhc---------cCCCCchhHHHHHHHHHHHHHHHH-hcccCC--CCCCch
Q 018484 16 SDRPRWQQFLICSSGFFFGYLVNGICEEYVYN---------RLQFSYGWYFTFVQGFVYLVLIYL-QGFTTK--QMVNPW 83 (355)
Q Consensus 16 ~~~~~~~~~~~~~~~i~~~~~~~~~~~k~i~~---------~~~f~~p~~lt~~Q~~~~~~~~~~-~~~~~~--~~~~~~ 83 (355)
+-+|...++.+|++||+++|..||+.||+|.+ .++|+|...+.++||.+..++..+ ...+++ -.+.|.
T Consensus 6 s~lper~rf~ica~GifvCYF~yGI~QEkitrGkYg~~g~~~E~FTfalaLVf~qC~~N~vfAkvl~~ir~~~~~D~t~~ 85 (337)
T KOG1580|consen 6 SWLPERGRFLICAGGIFVCYFVYGIQQEKITRGKYGLPGESIEKFTFALALVFFQCTANTVFAKVLFLIRKKTEIDNTPT 85 (337)
T ss_pred cccccccceeEEecchhheehhhhhHHHHhhccccCCCCcchheehHHHHHHHHHHHHHHHHHHhheeecccccccCCcc
Confidence 34577889999999999999999999999964 246899999999999998776533 223332 235677
Q ss_pred HHHHHHHHHHHhhHHHHHHHhhCCChhHHHHHhhcchHHHHHHHhhhcCCccccChhHHHHHHHHHHHHHHHhccCCCCC
Q 018484 84 KTYVKLSAVLMGSHGLTKGSLAFLNYPAQIMFKSTKVLPVMIMGAFIPGLRRKYPAHEYVAALLLVFGLILFTMADAQTS 163 (355)
Q Consensus 84 ~~~~~~s~~~~~~~~l~~~sL~~~s~~~~~v~ks~~pi~v~l~~~l~~gl~~~~s~~~~~~l~li~~Gv~l~~~~~~~~~ 163 (355)
+.|...++.|.++++.+|.|++|+|+|++.+.|||+|+++|+++.++ .+|+++|++|++++++++|++++.+.+.+..
T Consensus 86 ~~YaAcs~sYLlAMVssN~Alq~vpYPTqVlgKScKPIPVMilGVl~--~~KsY~w~kY~cVL~IV~GValFmYK~~Kv~ 163 (337)
T KOG1580|consen 86 KMYAACSASYLLAMVSSNQALQYVPYPTQVLGKSCKPIPVMILGVLF--AHKSYHWRKYCCVLMIVVGVALFMYKENKVG 163 (337)
T ss_pred hHHHHHHHHHHHHHHhccchhcccCCcHHHhcccCCCcceeeeehhh--hcccccHHHHHHHHHHHHHHHHhhccccccC
Confidence 88999999999999999999999999999999999999999999999 7999999999999999999999999875432
Q ss_pred ---CCchhhHHHHHHHHHHHHHhHHHHHHHHHhhCCCCChhhHHHHHHHHhHHHHHHHHHhhchHHHHHHHHhhhhHHHH
Q 018484 164 ---PNFSLIGVLMISGALVMDSFLGNLQEVIFTVNPDTTQMEMLFCSTVVGLPFLLVPMILTGELVRAWNSCSQHLYVYG 240 (355)
Q Consensus 164 ---~~~~~~G~~l~l~s~~~~a~~~v~~~~l~~~~~~~~~~~l~~~~~l~~~~~ll~~~~~~ge~~~~~~~~~~~~~~~~ 240 (355)
.+...+|-+++++|..+|++....|||+.+.+.+ +..+||+|+|+++...+-..++++||.++...+..+||..|+
T Consensus 164 g~e~~t~g~GElLL~lSL~mDGlTg~~Qdrira~yq~-~g~~MM~~~NlwStL~Lg~g~lfTGElweF~yF~~RhP~~~~ 242 (337)
T KOG1580|consen 164 GAEDKTFGFGELLLILSLAMDGLTGSIQDRIRASYQR-TGTSMMFYTNLWSTLYLGAGLLFTGELWEFFYFVQRHPYVFW 242 (337)
T ss_pred CCcccccchHHHHHHHHHHhcccchhHHHHHHHhhcc-CchhhHHHHHHHHHHHhhhhheehhhHHHHHHHHHhccHHHH
Confidence 2345789999999999999999999999887754 456899999999998887788899999998888899999888
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhhchHHHHHHHhHHHHHHHHHHHHHhCCCcccchhhhHHHHHHHHHHHhccCC
Q 018484 241 VLVFEAMATFVGQVSVLSLIALFGAATTAMITTARKAVTLFLSYLIFTKPLTEQHGTGLLLIAMGIILKMLPEN 314 (355)
Q Consensus 241 ~l~l~~~~~~l~~~~~~~~i~~~sa~t~svv~~~k~v~~i~ls~l~f~~~~t~~~~iG~~lv~~Gv~ly~~~k~ 314 (355)
.+.+.++++++||.++|..+..+||++.|++++.|+.++++.|+++|++++++.||+|.++++.|...-....+
T Consensus 243 ~l~l~ai~s~LGQ~fIF~tv~~FgPLtCSivTTTRKfFTil~SVllf~npls~rQwlgtvlVF~aL~~D~~~GK 316 (337)
T KOG1580|consen 243 DLTLLAIASCLGQWFIFKTVEEFGPLTCSIVTTTRKFFTILISVLLFNNPLSGRQWLGTVLVFSALTADVVDGK 316 (337)
T ss_pred HHHHHHHHHHhhhHHHHHHHHHhCCeeEEEEeehHHHHHHHHHHHHhcCcCcHHHHHHHHHHHHHhhhHhhcCC
Confidence 88888999999999999999999999999999999999999999999999999999999999999988765544
No 4
>KOG1581 consensus UDP-galactose transporter related protein [Carbohydrate transport and metabolism]
Probab=100.00 E-value=1.1e-42 Score=313.26 Aligned_cols=293 Identities=28% Similarity=0.469 Sum_probs=264.3
Q ss_pred hhHHHHHHHHHHHHHHHHHHHHhhhhhcc------CCCCchhHHHHHHHHHHHHHHHH--hccc-CCCCCCchHHHHHHH
Q 018484 20 RWQQFLICSSGFFFGYLVNGICEEYVYNR------LQFSYGWYFTFVQGFVYLVLIYL--QGFT-TKQMVNPWKTYVKLS 90 (355)
Q Consensus 20 ~~~~~~~~~~~i~~~~~~~~~~~k~i~~~------~~f~~p~~lt~~Q~~~~~~~~~~--~~~~-~~~~~~~~~~~~~~s 90 (355)
+..++++|+.|||.+|+.||++||+++++ .+|..+.++.++|-+++.++.+. ..++ +.+.+.||++|..+|
T Consensus 11 ~~~~L~~c~~GI~~t~l~~gVlQEki~T~~y~~~~~rF~~~~fL~~~q~l~~~~~s~~~l~~~k~~~~~~apl~~y~~is 90 (327)
T KOG1581|consen 11 KIILLVFCFSGIYATFLTWGVLQEKIMTRPYGEDGERFEHSLFLVFCQRLVALLVSYAMLKWWKKELSGVAPLYKYSLIS 90 (327)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhcceeecccCcccccccccHHHHHHHHHHHHHHHHHHHhcccccCCCCCchhHHhHHH
Confidence 45789999999999999999999999764 46999999999999988765433 2222 235678999999999
Q ss_pred HHHHhhHHHHHHHhhCCChhHHHHHhhcchHHHHHHHhhhcCCccccChhHHHHHHHHHHHHHHHhccCCCCC-----CC
Q 018484 91 AVLMGSHGLTKGSLAFLNYPAQIMFKSTKVLPVMIMGAFIPGLRRKYPAHEYVAALLLVFGLILFTMADAQTS-----PN 165 (355)
Q Consensus 91 ~~~~~~~~l~~~sL~~~s~~~~~v~ks~~pi~v~l~~~l~~gl~~~~s~~~~~~l~li~~Gv~l~~~~~~~~~-----~~ 165 (355)
+.+..+-++++.||+|+|+|++++.|||+.+|||+++.++ +|+|+++++|++..++..|+.++...+.+++ .+
T Consensus 91 ~tn~~s~~~~yeaLKyvSyPtq~LaKscKmIPVmlmg~Lv--y~~ky~~~eYl~~~LIs~GvsiF~l~~~s~s~~~~g~~ 168 (327)
T KOG1581|consen 91 FTNTLSSWCGYEALKYVSYPTQTLAKSCKMIPVMLMGTLV--YGRKYSSFEYLVAFLISLGVSIFSLFPNSDSSSKSGRE 168 (327)
T ss_pred HHhhcchHHHHHHHHhccchHHHHHHHhhhhHHHHHHHHH--hcCccCcHHHHHHHHHHhheeeEEEecCCCCccccCCC
Confidence 9999999999999999999999999999999999999999 8999999999999999999999988654321 24
Q ss_pred chhhHHHHHHHHHHHHHhHHHHHHHHHhhCCCCChhhHHHHHHHHhHHHHHHHHHhhchHHHHHHHHhhhhHHHHHHHHH
Q 018484 166 FSLIGVLMISGALVMDSFLGNLQEVIFTVNPDTTQMEMLFCSTVVGLPFLLVPMILTGELVRAWNSCSQHLYVYGVLVFE 245 (355)
Q Consensus 166 ~~~~G~~l~l~s~~~~a~~~v~~~~l~~~~~~~~~~~l~~~~~l~~~~~ll~~~~~~ge~~~~~~~~~~~~~~~~~l~l~ 245 (355)
+.++|+.++..++++||+.+..|+++++++ +.+.+++|++.|++++++-....+..|...+..++..+||+.+.++++.
T Consensus 169 ns~~G~~Ll~~~L~fDgfTn~tQd~lf~~~-k~s~~~mM~~vNLf~~i~~~~~li~qg~~~~av~F~~~hp~~~~Di~l~ 247 (327)
T KOG1581|consen 169 NSPIGILLLFGYLLFDGFTNATQDSLFKKY-KVSSLHMMFGVNLFSAILNGTYLILQGHLLPAVSFIKEHPDVAFDILLY 247 (327)
T ss_pred CchHhHHHHHHHHHHHhhHHhHHHHHhccC-CccHhHHHHHHHHHHHHHHHHhhhcCCCCchHHHHHHcChhHHHHHHHH
Confidence 679999999999999999999999999865 5688999999999999887777777788888889999999999999999
Q ss_pred HHHHHHHHHHHHHHHHhhchHHHHHHHhHHHHHHHHHHHHHhCCCcccchhhhHHHHHHHHHHHhccCCC
Q 018484 246 AMATFVGQVSVLSLIALFGAATTAMITTARKAVTLFLSYLIFTKPLTEQHGTGLLLIAMGIILKMLPENK 315 (355)
Q Consensus 246 ~~~~~l~~~~~~~~i~~~sa~t~svv~~~k~v~~i~ls~l~f~~~~t~~~~iG~~lv~~Gv~ly~~~k~~ 315 (355)
+.++.+||.++|+.++++||++.++++++|+++++++|.++|||++++.||.|+.+++.|+.+..+.|++
T Consensus 248 s~~gavGQ~FI~~TI~~FGslt~t~I~ttRk~~si~lS~i~f~h~~s~~q~~g~~iVFg~i~l~~~~k~~ 317 (327)
T KOG1581|consen 248 STCGAVGQLFIFYTIERFGSLTFTTIMTTRKMVSIMLSCIVFGHPLSSEQWLGVLIVFGGIFLEILLKKK 317 (327)
T ss_pred HHhhhhhhheehhhHhhcccHHHHHHHHHHHHHHHHHHHHHhCCccchhhccCeeeehHHHHHHHHHHHh
Confidence 9999999999999999999999999999999999999999999999999999999999999999988877
No 5
>KOG1441 consensus Glucose-6-phosphate/phosphate and phosphoenolpyruvate/phosphate antiporter [Carbohydrate transport and metabolism; Amino acid transport and metabolism]
Probab=100.00 E-value=1.3e-35 Score=276.63 Aligned_cols=293 Identities=18% Similarity=0.266 Sum_probs=244.3
Q ss_pred hhHHHHHHHHHHHHHHHHHHHHhhhhhccCCCCchhHHHHHHHHHHHHHHH---HhcccCCC---CCCchHHHHHHHHHH
Q 018484 20 RWQQFLICSSGFFFGYLVNGICEEYVYNRLQFSYGWYFTFVQGFVYLVLIY---LQGFTTKQ---MVNPWKTYVKLSAVL 93 (355)
Q Consensus 20 ~~~~~~~~~~~i~~~~~~~~~~~k~i~~~~~f~~p~~lt~~Q~~~~~~~~~---~~~~~~~~---~~~~~~~~~~~s~~~ 93 (355)
+..+...+...||++.....++||+++++++|++|.++|.+|++++.+... ..+..+++ .+.+++..+++|+++
T Consensus 14 ~~~~~~~~~~~w~~~~v~~~~~nK~il~~~~f~~p~~lt~~~~~~~~l~~~v~~~l~~~~~~~~~~~~~~~~llpl~~~~ 93 (316)
T KOG1441|consen 14 KILRIGIAFAIWYVLSVGVIILNKYILSKYGFPFPITLTMLHLFCGALALLVIKVLKLVPPSKISSKLPLRTLLPLGLVF 93 (316)
T ss_pred hhHHHHHHHHHHhhhheeeEEeeHhhhccCCCCCccHHHHHHHHHHHHHHHHHHHhcCCCCCccccccchHHHHHHHHHH
Confidence 455667778889999999999999999989999999999999888755432 23333322 346889999999999
Q ss_pred HhhHHHHHHHhhCCChhHHHHHhhcchHHHHHHHhhhcCCccccChhHHHHHHHHHHHHHHHhccCCCCCCCchhhHHHH
Q 018484 94 MGSHGLTKGSLAFLNYPAQIMFKSTKVLPVMIMGAFIPGLRRKYPAHEYVAALLLVFGLILFTMADAQTSPNFSLIGVLM 173 (355)
Q Consensus 94 ~~~~~l~~~sL~~~s~~~~~v~ks~~pi~v~l~~~l~~gl~~~~s~~~~~~l~li~~Gv~l~~~~~~~~~~~~~~~G~~l 173 (355)
+.+.+++|.|++|+|++++|++|+++|+++.++++++ .+|++++..++++++++.||++++..| .++++.|++.
T Consensus 94 ~~~~v~~n~Sl~~v~VsF~q~iKa~~P~~tvl~~~~~--~~~~~s~~~~lsL~piv~GV~ias~~e----~~fn~~G~i~ 167 (316)
T KOG1441|consen 94 CISHVLGNVSLSYVPVSFYQTIKALMPPFTVLLSVLL--LGKTYSSMTYLSLLPIVFGVAIASVTE----LSFNLFGFIS 167 (316)
T ss_pred HHHHHhcchhhhccchhHHHHHHhhcchhHHHHHHHH--hCCCCcceEEEEEEEeeeeEEEeeecc----ccccHHHHHH
Confidence 9999999999999999999999999999999999999 899999999999999999999998866 3689999999
Q ss_pred HHHHHHHHHhHHHHHHHHHhhC-CCCChhhHHHHHHHHhHHHHH-HHHH-hhchHHHHHHH-HhhhhHHHHHHHHHHHHH
Q 018484 174 ISGALVMDSFLGNLQEVIFTVN-PDTTQMEMLFCSTVVGLPFLL-VPMI-LTGELVRAWNS-CSQHLYVYGVLVFEAMAT 249 (355)
Q Consensus 174 ~l~s~~~~a~~~v~~~~l~~~~-~~~~~~~l~~~~~l~~~~~ll-~~~~-~~ge~~~~~~~-~~~~~~~~~~l~l~~~~~ 249 (355)
++++.+..++++++.+++++++ .+.++.+++.|++.+++.+++ |... .+|+....+.. .+.. .. ..+++++++.
T Consensus 168 a~~s~~~~al~~I~~~~ll~~~~~~~~~~~ll~y~ap~s~~~Ll~P~~~~~~~~~~~~~~~~~~~~-~~-~~~~~~sv~~ 245 (316)
T KOG1441|consen 168 AMISNLAFALRNILSKKLLTSKGESLNSMNLLYYTAPISLIFLLIPFLDYVEGNKFVGFLTAPWFV-TF-LILLLNSVLA 245 (316)
T ss_pred HHHHHHHHHHHHHHHHHhhhccccccCchHHHHHhhhHHHHHHhcchHhhhcccceeeeeccccch-hh-HHHHHHHHHH
Confidence 9999999999999999998643 345788999999999988887 5432 22322100000 1111 12 2334445888
Q ss_pred HHHHHHHHHHHHhhchHHHHHHHhHHHHHHHHHHHHHhCCCcccchhhhHHHHHHHHHHHhccCCCCCCCC
Q 018484 250 FVGQVSVLSLIALFGAATTAMITTARKAVTLFLSYLIFTKPLTEQHGTGLLLIAMGIILKMLPENKAPANN 320 (355)
Q Consensus 250 ~l~~~~~~~~i~~~sa~t~svv~~~k~v~~i~ls~l~f~~~~t~~~~iG~~lv~~Gv~ly~~~k~~~~~~~ 320 (355)
+..|.+.|.+++++||+|.++.|+.|+++.++.|+++|++++|+.|..|+++.++|+.+|++.|.++++++
T Consensus 246 f~~Nls~f~~ig~tSalT~~V~g~~K~~~vi~~s~~iF~~pvt~~n~~G~~iai~Gv~~Y~~~k~~~~~~~ 316 (316)
T KOG1441|consen 246 FLLNLSAFLVIGRTSALTYSVAGHMKRIVVIVVSWLIFGNPVTFLNALGYAIAILGVFLYSRAKLKEKKGK 316 (316)
T ss_pred HHHHHHHHHHHcccCchhhhhhccceEEEEEEeEeeeecCCCchhhHHHHHHHHHHHHHHHHHhhhhhccC
Confidence 99999999999999999999999999999999999999999999999999999999999999998877653
No 6
>PTZ00343 triose or hexose phosphate/phosphate translocator; Provisional
Probab=100.00 E-value=7.3e-32 Score=259.38 Aligned_cols=285 Identities=13% Similarity=0.149 Sum_probs=225.4
Q ss_pred hHHHHHHHHHHHHHHHHHHHHhhhhhccCCCCchhHHHHHHHHHHHHHH---HHhcccCCCC----CCchHHHHHHHHHH
Q 018484 21 WQQFLICSSGFFFGYLVNGICEEYVYNRLQFSYGWYFTFVQGFVYLVLI---YLQGFTTKQM----VNPWKTYVKLSAVL 93 (355)
Q Consensus 21 ~~~~~~~~~~i~~~~~~~~~~~k~i~~~~~f~~p~~lt~~Q~~~~~~~~---~~~~~~~~~~----~~~~~~~~~~s~~~ 93 (355)
..|....++.||.....+.+.||++++. +|+|++++++|++++.++. +..+.+++++ +..++..+++|+++
T Consensus 47 ~~~~~~~~~~wy~~s~~~~~~nK~vl~~--~~~P~~l~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~llp~gl~~ 124 (350)
T PTZ00343 47 KWKLALLFLTWYALNVLYVVDNKLALNM--LPLPWTISSLQLFVGWLFALLYWATGFRKIPRIKSLKLFLKNFLPQGLCH 124 (350)
T ss_pred cHHHHHHHHHHHHHHHHHHHHHHHHHHh--CChhHHHHHHHHHHHHHHHHHHHHhCCCCCCCCCCHHHHHHHHHHHHHHH
Confidence 5678889999999999999999999854 7899999999999874432 2223332221 12456678899998
Q ss_pred HhhHHHHHHHhhCCChhHHHHHhhcchHHHHHHHhhhcCCccccChhHHHHHHHHHHHHHHHhccCCCCCCCchhhHHHH
Q 018484 94 MGSHGLTKGSLAFLNYPAQIMFKSTKVLPVMIMGAFIPGLRRKYPAHEYVAALLLVFGLILFTMADAQTSPNFSLIGVLM 173 (355)
Q Consensus 94 ~~~~~l~~~sL~~~s~~~~~v~ks~~pi~v~l~~~l~~gl~~~~s~~~~~~l~li~~Gv~l~~~~~~~~~~~~~~~G~~l 173 (355)
.......+.|++++++++++++|++.|++++++++++ +|||++++++++++++++|+++.+..| .++++.|+++
T Consensus 125 ~~~~~~~~~sl~~~svs~~~iika~~Pvft~lls~~~--l~ek~s~~~~l~l~l~v~Gv~l~~~~~----~~~~~~G~~~ 198 (350)
T PTZ00343 125 LFVHFGAVISMGLGAVSFTHVVKAAEPVFTALLSILF--LKQFLNLYAYLSLIPIVGGVALASVKE----LHFTWLAFWC 198 (350)
T ss_pred HHHHHHHHHHHhhccHHHHHHHHHhhHHHHHHHHHHH--hCCCccHHHHHHHHHHHHHHHheeccc----chhHHHHHHH
Confidence 8777778999999999999999999999999999999 899999999999999999999987654 3467899999
Q ss_pred HHHHHHHHHhHHHHHHHHHhhCC----CCChhhHHHHHHHHhHHHHHHHHHhh-chH-HHHHHH----Hhhh--hHHHHH
Q 018484 174 ISGALVMDSFLGNLQEVIFTVNP----DTTQMEMLFCSTVVGLPFLLVPMILT-GEL-VRAWNS----CSQH--LYVYGV 241 (355)
Q Consensus 174 ~l~s~~~~a~~~v~~~~l~~~~~----~~~~~~l~~~~~l~~~~~ll~~~~~~-ge~-~~~~~~----~~~~--~~~~~~ 241 (355)
+++|.+++|+++++.|+..++++ +.+..++..+..+++.++++|..... +.. ...+.. .... ...+..
T Consensus 199 ~l~s~~~~a~~~i~~k~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~lp~~~~~e~~~~~~~~~~~~~~~~~~~~~~~l~~ 278 (350)
T PTZ00343 199 AMLSNLGSSLRSIFAKKTMKNKSEIGENLTASNIYMLLTLIASLISLPLVLFFEGKKWVPVWTNYTANMTNYTKGIIIFK 278 (350)
T ss_pred HHHHHHHHHHHHHHHHHHhcccccccccCCHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHhhhcccccchHHHHHH
Confidence 99999999999999999887542 23444555566777777777665422 211 111110 0011 112234
Q ss_pred HHHHHHHHHHHHHHHHHHHHhhchHHHHHHHhHHHHHHHHHHHHHhCCCcccchhhhHHHHHHHHHHHhccC
Q 018484 242 LVFEAMATFVGQVSVLSLIALFGAATTAMITTARKAVTLFLSYLIFTKPLTEQHGTGLLLIAMGIILKMLPE 313 (355)
Q Consensus 242 l~l~~~~~~l~~~~~~~~i~~~sa~t~svv~~~k~v~~i~ls~l~f~~~~t~~~~iG~~lv~~Gv~ly~~~k 313 (355)
++.+++..++.|.+.|.+++++||+++++.+++||++++++|+++|||++|+.+++|.+++++|+++|++.|
T Consensus 279 i~~s~l~~~l~n~~~f~~l~~~s~~t~sv~~~lk~V~~iv~s~l~~ge~lt~~~~iG~~lii~Gv~lYs~~k 350 (350)
T PTZ00343 279 IFFSGVWYYLYNEVAFYCLGKVNQVTHAVANTLKRVVIIVSSIIIFQTQVTLLGYLGMAVAILGALLYSLFK 350 (350)
T ss_pred HHHHHHHHHHHHHHHHHHHhccchhHHHHHHHHHHHHHhhhhHHHhCCCCchHhHHHHHHHHHHHHHHhhcC
Confidence 555666777777888899999999999999999999999999999999999999999999999999999764
No 7
>TIGR00817 tpt Tpt phosphate/phosphoenolpyruvate translocator. specificities overlap.
Probab=100.00 E-value=3.4e-32 Score=256.96 Aligned_cols=287 Identities=16% Similarity=0.178 Sum_probs=222.9
Q ss_pred HHHHHHHHHHHHHHHHHHHhhhhhccCCCCchhHHHHHHHHHHHHHHHHh---cccCC--CCCCchHHHHHHHHHHHhhH
Q 018484 23 QFLICSSGFFFGYLVNGICEEYVYNRLQFSYGWYFTFVQGFVYLVLIYLQ---GFTTK--QMVNPWKTYVKLSAVLMGSH 97 (355)
Q Consensus 23 ~~~~~~~~i~~~~~~~~~~~k~i~~~~~f~~p~~lt~~Q~~~~~~~~~~~---~~~~~--~~~~~~~~~~~~s~~~~~~~ 97 (355)
+....++.||..+..+.++||++++ +|++|.++++.|++++.+...+. +.+++ .++.+++..+++|++++.+.
T Consensus 2 ~~~~~~~~w~~~~~~~~~~NK~~l~--~~~~P~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~ 79 (302)
T TIGR00817 2 QTGLLFGLWYFLNVYFNIYNKKLLN--VFPYPYFKTLISLAVGSLYCLLSWSSGLPKRLKISSALLKLLLPVAIVHTIGH 79 (302)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHh--hCChhHHHHHHHHHHHHHHHHHHHHhCCCCCCCCCHHHHHHHHHHHHHHHHHH
Confidence 4556778899999999999999985 48999999999998875543322 22221 12334566778999998999
Q ss_pred HHHHHHhhCCChhHHHHHhhcchHHHHHHHhhhcCCccccChhHHHHHHHHHHHHHHHhccCCCCCCCchhhHHHHHHHH
Q 018484 98 GLTKGSLAFLNYPAQIMFKSTKVLPVMIMGAFIPGLRRKYPAHEYVAALLLVFGLILFTMADAQTSPNFSLIGVLMISGA 177 (355)
Q Consensus 98 ~l~~~sL~~~s~~~~~v~ks~~pi~v~l~~~l~~gl~~~~s~~~~~~l~li~~Gv~l~~~~~~~~~~~~~~~G~~l~l~s 177 (355)
.++|.|++|+++++++++|++.|++++++++++ +|||++++++++++++++|+++....+ .+++..|++++++|
T Consensus 80 ~~~~~~l~~~s~s~~~li~~~~Pv~~~ll~~~~--~~e~~~~~~~~~l~l~~~Gv~l~~~~~----~~~~~~G~~~~l~a 153 (302)
T TIGR00817 80 VTSNVSLSKVAVSFTHTIKAMEPFFSVVLSAFF--LGQEFPSTLWLSLLPIVGGVALASDTE----LSFNWAGFLSAMIS 153 (302)
T ss_pred HHHHHHHHhccHHHHHHHHhcchHHHHHHHHHH--hCCCCcHHHHHHHHHHHHHHhhhcCCc----ccccHHHHHHHHHH
Confidence 999999999999999999999999999999999 899999999999999999998875332 24567899999999
Q ss_pred HHHHHhHHHHHHHHHhhCCCCChhhHHHHHHHHhHHHHHHHHHhhchHHHHH-HHHh----hhh-HHHHHHHHHH-HHHH
Q 018484 178 LVMDSFLGNLQEVIFTVNPDTTQMEMLFCSTVVGLPFLLVPMILTGELVRAW-NSCS----QHL-YVYGVLVFEA-MATF 250 (355)
Q Consensus 178 ~~~~a~~~v~~~~l~~~~~~~~~~~l~~~~~l~~~~~ll~~~~~~ge~~~~~-~~~~----~~~-~~~~~l~l~~-~~~~ 250 (355)
.+++|++.++.||..++. +.++.+++.|+++++.++++|.....++..... +... ..+ ..+...+..+ .+..
T Consensus 154 ~~~~a~~~v~~k~~~~~~-~~~~~~~~~~~~~~~~~~l~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 232 (302)
T TIGR00817 154 NITFVSRNIFSKKAMTIK-SLDKTNLYAYISIMSLFLLSPPAFITEGPPFLPHGFMQAISGVNVTKIYTVSLVAAMGFFH 232 (302)
T ss_pred HHHHHHHHHHHHHhhccC-CCCcccHHHHHHHHHHHHHHHHHHHHcchHHHHHHHHHhhcccCchHHHHHHHHHHHHHHH
Confidence 999999999998877632 235678889998888877777655443221111 0000 011 1121122222 2334
Q ss_pred HHHHHHHHHHHhhchHHHHHHHhHHHHHHHHHHHHHhCCCcccchhhhHHHHHHHHHHHhccCCCCCC
Q 018484 251 VGQVSVLSLIALFGAATTAMITTARKAVTLFLSYLIFTKPLTEQHGTGLLLIAMGIILKMLPENKAPA 318 (355)
Q Consensus 251 l~~~~~~~~i~~~sa~t~svv~~~k~v~~i~ls~l~f~~~~t~~~~iG~~lv~~Gv~ly~~~k~~~~~ 318 (355)
..|.+.+.+++++||+++++.++++|++++++|++++||++|+.+++|.+++++|+.+|+..|.++|+
T Consensus 233 ~~~~~~~~~l~~~sa~t~sv~~~l~pv~~~~~~~~~lge~lt~~~~~G~~lil~Gv~l~~~~k~~~~~ 300 (302)
T TIGR00817 233 FYQQVAFMLLGRVSPLTHSVGNCMKRVVVIVVSILFFGTKISPQQVFGTGIAIAGVFLYSRVKAQKPK 300 (302)
T ss_pred HHHHHHHHHHccCCchHHHHHhhhhhhheeeeehhhcCCCCchhHHHHHHHHHHHHHHHHHHhccCcC
Confidence 55667788999999999999999999999999999999999999999999999999999987655444
No 8
>KOG1583 consensus UDP-N-acetylglucosamine transporter [Carbohydrate transport and metabolism]
Probab=100.00 E-value=5.1e-33 Score=247.11 Aligned_cols=287 Identities=24% Similarity=0.388 Sum_probs=239.9
Q ss_pred HHHHHHHHHHHHHHHHHHhhhhhccCCCCchhHHHHHHHHHHHH--HHHHhcccCCCCCCchHHHHHHHHHHHhhHHHHH
Q 018484 24 FLICSSGFFFGYLVNGICEEYVYNRLQFSYGWYFTFVQGFVYLV--LIYLQGFTTKQMVNPWKTYVKLSAVLMGSHGLTK 101 (355)
Q Consensus 24 ~~~~~~~i~~~~~~~~~~~k~i~~~~~f~~p~~lt~~Q~~~~~~--~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~l~~ 101 (355)
-+..+.+++.+||...+.-|.+.+. .-...+.+|++|+++-.. +.+-..+...++++|+|.|+..-..++....++|
T Consensus 4 a~~ai~~vf~GCcsnvv~lE~L~~~-~pgsgNLITFaqFlFia~eGlif~skf~~~k~kiplk~Y~i~V~mFF~vnv~NN 82 (330)
T KOG1583|consen 4 AAAAISLVFGGCCSNVVFLELLVRN-EPGSGNLITFAQFLFIATEGLIFTSKFFTVKPKIPLKDYAITVAMFFIVNVTNN 82 (330)
T ss_pred HHHHHHHHHHhhhchHHHHHHHHHh-CCCCeeehHHHHHHHHHHhceeeeccccccCCCCchhhhheehheeeeeeeecc
Confidence 3456778999999999999999754 445679999999887433 2223344444578999999987767777788999
Q ss_pred HHhhC-CChhHHHHHhhcchHHHHHHHhhhcCCccccChhHHHHHHHHHHHHHHHhccCCC---C-------C---CC--
Q 018484 102 GSLAF-LNYPAQIMFKSTKVLPVMIMGAFIPGLRRKYPAHEYVAALLLVFGLILFTMADAQ---T-------S---PN-- 165 (355)
Q Consensus 102 ~sL~~-~s~~~~~v~ks~~pi~v~l~~~l~~gl~~~~s~~~~~~l~li~~Gv~l~~~~~~~---~-------~---~~-- 165 (355)
+++++ +|.|...++|+.+++.+|++++++ .+|||+.+|+.+++++++|+++.++...+ . + .+
T Consensus 83 ~al~f~I~~PlHiIfRsgsll~nM~~g~il--~~k~Ys~~Qy~Sv~~iTiGiiIcTl~s~~d~~~~~~~l~~~~~~~~~~ 160 (330)
T KOG1583|consen 83 YALKFNIPMPLHIIFRSGSLLANMILGWIL--LGKRYSLRQYSSVLMITIGIIICTLFSSKDGRSKLSGLDSGSAQSDFF 160 (330)
T ss_pred ceeeecccceEEEEEecCcHHHHHHHHHHh--ccceeehhhhhhHHhhhhhheeEEeecCcchhhhhcccccCcccccch
Confidence 99998 999999999999999999999999 89999999999999999999998765321 1 0 01
Q ss_pred chhhHHHHHHHHHHHHHhHHHHHHHHHhhCCCCChhhHHHHHHHHhHHHHHHHHHhhchHHHHHHHHhhh----------
Q 018484 166 FSLIGVLMISGALVMDSFLGNLQEVIFTVNPDTTQMEMLFCSTVVGLPFLLVPMILTGELVRAWNSCSQH---------- 235 (355)
Q Consensus 166 ~~~~G~~l~l~s~~~~a~~~v~~~~l~~~~~~~~~~~l~~~~~l~~~~~ll~~~~~~ge~~~~~~~~~~~---------- 235 (355)
...+|+.++.++.+.+|..+++||+.++++++ ++.|.+||++.+++|+++ ++-+|+.+.+.....+
T Consensus 161 ~w~iGi~lL~~al~~sa~mgiyqE~~Y~kyGK-h~~EalFytH~LsLP~Fl---f~~~div~~~~~~~~se~~~~p~~g~ 236 (330)
T KOG1583|consen 161 WWLIGIALLVFALLLSAYMGIYQETTYQKYGK-HWKEALFYTHFLSLPLFL---FMGDDIVSHWRLAFKSESYLIPLLGF 236 (330)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcC-ChHHHHHHHHHhccchHH---HhcchHHHHHHHHhcCcceeccccCc
Confidence 24789999999999999999999999999987 688999999999998864 3455666665443322
Q ss_pred --hHHHHHHHHHHHHHHHHHHHHHHHHHhhchHHHHHHHhHHHHHHHHHHHHHhCCCcccchhhhHHHHHHHHHHHhccC
Q 018484 236 --LYVYGVLVFEAMATFVGQVSVLSLIALFGAATTAMITTARKAVTLFLSYLIFTKPLTEQHGTGLLLIAMGIILKMLPE 313 (355)
Q Consensus 236 --~~~~~~l~l~~~~~~l~~~~~~~~i~~~sa~t~svv~~~k~v~~i~ls~l~f~~~~t~~~~iG~~lv~~Gv~ly~~~k 313 (355)
|..|.+++.+++.++.+.-.++.+..+++++|.+++-++||.+++++|++.|++++|+++|+|..+++.|.++|+-..
T Consensus 237 ~vP~~~~yLl~n~L~Qy~CikgVy~L~te~~sLTVTlvltlRKFvSLl~SiiyF~Npft~~h~lGa~lVF~Gt~~fa~~~ 316 (330)
T KOG1583|consen 237 KVPSMWVYLLFNVLTQYFCIKGVYILTTETSSLTVTLVLTLRKFVSLLFSIIYFENPFTPWHWLGAALVFFGTLLFANVW 316 (330)
T ss_pred cccHHHHHHHHHHHHHHHHHHhhhhhhceecceEEEEeeeHHHHHHHhheeeEecCCCCHHHHHHHHHHHHHHHHHHHHH
Confidence 456788888999988888888999999999999999999999999999999999999999999999999999998776
Q ss_pred CCCC
Q 018484 314 NKAP 317 (355)
Q Consensus 314 ~~~~ 317 (355)
.++|
T Consensus 317 ~~~~ 320 (330)
T KOG1583|consen 317 NHPK 320 (330)
T ss_pred cCcc
Confidence 6655
No 9
>KOG1444 consensus Nucleotide-sugar transporter VRG4/SQV-7 [Carbohydrate transport and metabolism; Posttranslational modification, protein turnover, chaperones; Intracellular trafficking, secretion, and vesicular transport]
Probab=100.00 E-value=4.3e-31 Score=241.32 Aligned_cols=292 Identities=17% Similarity=0.240 Sum_probs=244.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHhhhhhccCCCCchhHHHHHHHHHHHHHHHHh---ccc--CCCCCCchHHHHHHHHHHHhh
Q 018484 22 QQFLICSSGFFFGYLVNGICEEYVYNRLQFSYGWYFTFVQGFVYLVLIYLQ---GFT--TKQMVNPWKTYVKLSAVLMGS 96 (355)
Q Consensus 22 ~~~~~~~~~i~~~~~~~~~~~k~i~~~~~f~~p~~lt~~Q~~~~~~~~~~~---~~~--~~~~~~~~~~~~~~s~~~~~~ 96 (355)
.+-+..+++.-++.++..+.||+++++++||...++...|.+++++..+.. |.- ++-.....|+|+|+++.+.++
T Consensus 11 ~~~l~sa~~Y~~sS~lm~vvNK~vls~y~f~~~l~l~~~Q~l~s~~~v~~lk~~~lv~~~~l~~~~~kk~~P~~~lf~~~ 90 (314)
T KOG1444|consen 11 SSPLLSALFYCLSSILMTVVNKIVLSSYNFPMGLLLMLLQSLASVLVVLVLKRLGLVNFRPLDLRTAKKWFPVSLLFVGM 90 (314)
T ss_pred hhhhHHHHHHHHHHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHHHHHHHHHHhceeecCCcChHHHHHHccHHHHHHHH
Confidence 333455566666778888999999999999988888899999987655442 211 122345568899999999999
Q ss_pred HHHHHHHhhCCChhHHHHHhhcchHHHHHHHhhhcCCccccChhHHHHHHHHHHHHHHHhccCCCCCCCchhhHHHHHHH
Q 018484 97 HGLTKGSLAFLNYPAQIMFKSTKVLPVMIMGAFIPGLRRKYPAHEYVAALLLVFGLILFTMADAQTSPNFSLIGVLMISG 176 (355)
Q Consensus 97 ~~l~~~sL~~~s~~~~~v~ks~~pi~v~l~~~l~~gl~~~~s~~~~~~l~li~~Gv~l~~~~~~~~~~~~~~~G~~l~l~ 176 (355)
+..+..+++|+|+|+++++|+.+|+.+++.+..+ +|+++++..|.++..+.+|......+|. .++..|+.|++.
T Consensus 91 i~t~~~slk~lnVpm~tv~kn~tii~~ai~E~lf--~~~~~~~~v~~Sv~~m~~~s~~~~~~d~----sf~~~gY~w~~~ 164 (314)
T KOG1444|consen 91 LFTGSKSLKYLNVPMFTVFKNLTIILTAIGEVLF--FGKRPSNKVWASVFAMIIGSVAAAFTDL----SFNLRGYSWALA 164 (314)
T ss_pred HHHccccccccCchHHHHHhhchHHHHHHhHHhh--cCcCchhhHHHHHHHHHHHHHhhccccc----eecchhHHHHHH
Confidence 9999999999999999999999999999999999 8999999999999999999999988774 467789999999
Q ss_pred HHHHHHhHHHHHHHHHhhCCCCChhhHHHHHHHHhHHHHHHHHHhhchHHHHHHHH---hhhhHHHHHHHHHHHHHHHHH
Q 018484 177 ALVMDSFLGNLQEVIFTVNPDTTQMEMLFCSTVVGLPFLLVPMILTGELVRAWNSC---SQHLYVYGVLVFEAMATFVGQ 253 (355)
Q Consensus 177 s~~~~a~~~v~~~~l~~~~~~~~~~~l~~~~~l~~~~~ll~~~~~~ge~~~~~~~~---~~~~~~~~~l~l~~~~~~l~~ 253 (355)
++++.+...++.|+..+.. +.+.+++++|++++++|.+.+..++.||.. ...+. +..+..+..+.++|++++.-+
T Consensus 165 n~~~~a~~~v~~kk~vd~~-~l~~~~lv~yNnl~~L~~l~~~~~~~ge~~-~l~~~~~~~~~~~~~~~~~lScv~gf~is 242 (314)
T KOG1444|consen 165 NCLTTAAFVVYVKKSVDSA-NLNKFGLVFYNNLLSLPPLLILSFITGELD-ALSLNFDNWSDSSVLVVMLLSCVMGFGIS 242 (314)
T ss_pred HHHHHHHHHHHHHHhhccc-cccceeEEeehhHHHHHHHHHHHHHhcchH-HHHhhcccccchhHHHHHHHHHHHHHHHH
Confidence 9999999998888766654 346789999999999998877777888876 32221 233456778899999999999
Q ss_pred HHHHHHHHhhchHHHHHHHhHHHHHHHHHHHHHhCCCcccchhhhHHHHHHHHHHHhccCCCCCCCCC
Q 018484 254 VSVLSLIALFGAATTAMITTARKAVTLFLSYLIFTKPLTEQHGTGLLLIAMGIILKMLPENKAPANNR 321 (355)
Q Consensus 254 ~~~~~~i~~~sa~t~svv~~~k~v~~i~ls~l~f~~~~t~~~~iG~~lv~~Gv~ly~~~k~~~~~~~~ 321 (355)
++.++|++..||+|.+++|...+..+.+...+++|+++++.+.+|+.+.++|..+|++.+.|+|++++
T Consensus 243 y~s~~ct~~~SAtT~tivG~~n~l~t~l~~ll~~d~~~~~~n~~gll~~~~ggv~Y~~~~~~~k~~~~ 310 (314)
T KOG1444|consen 243 YTSFLCTRVNSATTTTIVGAKNKLLTYLGGLLFGDKPFTFLNVIGLLVGFFGGVLYSYATFRKKKQPP 310 (314)
T ss_pred HHHHHHHhhccccceeehhhhhhHHHHHHHHhcCCceechhhhHHHHHHhhhhhHHhhhhhhhccCCC
Confidence 99999999999999999996666666666667778999999999999999999999999988887777
No 10
>KOG1443 consensus Predicted integral membrane protein [Function unknown]
Probab=99.96 E-value=9e-29 Score=223.16 Aligned_cols=281 Identities=18% Similarity=0.280 Sum_probs=222.5
Q ss_pred HHHHHHHHHHHHHHHHHHhhhhhccCCCCchhHHHHHHHHHHHHHHH----Hhcc-cC-CCCCCchHHHH----HHHHHH
Q 018484 24 FLICSSGFFFGYLVNGICEEYVYNRLQFSYGWYFTFVQGFVYLVLIY----LQGF-TT-KQMVNPWKTYV----KLSAVL 93 (355)
Q Consensus 24 ~~~~~~~i~~~~~~~~~~~k~i~~~~~f~~p~~lt~~Q~~~~~~~~~----~~~~-~~-~~~~~~~~~~~----~~s~~~ 93 (355)
.+..+.++|++.+....+|++.- ..|++|.+++.+|.++-..++. .... .+ .+....|+.|+ |.|++.
T Consensus 17 ~L~lVl~yY~~Si~Ltf~~~~~~--~~f~fPLf~ts~h~~v~flfa~~~~~l~~~~~~r~r~~~sw~~~Lr~~aPtalat 94 (349)
T KOG1443|consen 17 TLALVLLYYFLSIGLTFYFKWLT--KNFHFPLFVTSLHLAVKFLFAALSRRLYQCSVPRARVVLSWRDYLRRLAPTALAT 94 (349)
T ss_pred HHHHHHHHHHHHHHHHHHhhhhh--cCcCCchHHHHHHHHHHHHHHHHHHHHHhccCCccccCCcHHHHHHHhhhhhhhh
Confidence 45567889998888888888885 4589999999999887443321 1111 11 23355677766 889999
Q ss_pred HhhHHHHHHHhhCCChhHHHHHhhcchHHHHHHHhhhcCCccccChhHHHHHHHHHHHHHHHhccCCCCCCCchhhHHHH
Q 018484 94 MGSHGLTKGSLAFLNYPAQIMFKSTKVLPVMIMGAFIPGLRRKYPAHEYVAALLLVFGLILFTMADAQTSPNFSLIGVLM 173 (355)
Q Consensus 94 ~~~~~l~~~sL~~~s~~~~~v~ks~~pi~v~l~~~l~~gl~~~~s~~~~~~l~li~~Gv~l~~~~~~~~~~~~~~~G~~l 173 (355)
+++++++|+|++|++++.|++.||++++|+.+++.+++ -|+++|.-.+.++++.+|++++++++ ++++..|+.+
T Consensus 95 a~DIGLSN~sl~yVtlSlYTM~KSSsi~FIllFs~if~--lEk~~w~L~l~v~lI~~Glflft~Ks----Tqf~i~Gf~l 168 (349)
T KOG1443|consen 95 ALDIGLSNWSLEYVTLSLYTMTKSSSILFILLFSLIFK--LEKFRWALVLIVLLIAVGLFLFTYKS----TQFNIEGFFL 168 (349)
T ss_pred hcccccccceeeeeeeeeeeeccccHHHHHHHHHHHHH--hHHHHHHHHHHHHHHhhheeEEEecc----cceeehhHHH
Confidence 99999999999999999999999999999999999994 59999999999999999999998876 4689999999
Q ss_pred HHHHHHHHHhHHHHHHHHHhhCC--CCChhhHHHHHHHHhHHHHHH-HHHhhchHHHH----HHHHhhhh--HHHHHHHH
Q 018484 174 ISGALVMDSFLGNLQEVIFTVNP--DTTQMEMLFCSTVVGLPFLLV-PMILTGELVRA----WNSCSQHL--YVYGVLVF 244 (355)
Q Consensus 174 ~l~s~~~~a~~~v~~~~l~~~~~--~~~~~~l~~~~~l~~~~~ll~-~~~~~ge~~~~----~~~~~~~~--~~~~~l~l 244 (355)
++.|.++.|+++.+.|.++++++ +.++..++++.+.+....++| .+.++|..... +++..... .....+.+
T Consensus 169 v~~aS~~sGlRW~~tQ~ll~~~~~~~~~P~~ti~~l~p~M~~~Ll~~~l~fEG~~~~~~s~~f~~~d~~~~~rv~g~i~l 248 (349)
T KOG1443|consen 169 VLAASLLSGLRWAFTQMLLRNQPSAKRNPIDTIFHLQPWMSIGLLPLSLLFEGLHLITSSSIFRFQDTGLILRVIGLISL 248 (349)
T ss_pred HHHHHHhhhhhHHHHHHHHhcCccccCCCeeeHHHhhhHHHHHHHHHHHHHcccccchhhhHHHhcCccHHHHHHHHHHH
Confidence 99999999999999999888764 346777788777655444444 34566643222 22211111 12344555
Q ss_pred HHHHHHHHHHHHHHHHHhhchHHHHHHHhHHHHHHHHHHHHHhCCCcccchhhhHHHHHHHHHHHhcc
Q 018484 245 EAMATFVGQVSVLSLIALFGAATTAMITTARKAVTLFLSYLIFTKPLTEQHGTGLLLIAMGIILKMLP 312 (355)
Q Consensus 245 ~~~~~~l~~~~~~~~i~~~sa~t~svv~~~k~v~~i~ls~l~f~~~~t~~~~iG~~lv~~Gv~ly~~~ 312 (355)
.+..+++.-.+.|.+..++|.+|.|+.|..|.+.+++++..+.++.++..+|.|..+++.|+..|...
T Consensus 249 ~g~laF~l~~sEflLl~~Ts~ltlSIaGI~Kel~tl~la~ii~~d~ls~lN~~Gl~i~~agi~~~~~~ 316 (349)
T KOG1443|consen 249 GGLLAFLLEFSEFLLLSRTSSLTLSIAGIVKEVCTLLLAIIILKDQLSLLNWLGLAICLAGILLHRNE 316 (349)
T ss_pred HHHHHHHHHHHHHheeeeccceeeeHHHHHHHHHHHHHHHHHhhcchhhhHHHHHHHHHHHHHHhccC
Confidence 56666666678899999999999999999999999999999999999999999999999999999443
No 11
>PF06027 DUF914: Eukaryotic protein of unknown function (DUF914); InterPro: IPR009262 This family consists of several hypothetical proteins of unknown function. Some of the sequences in this family are annotated as putative membrane proteins.
Probab=99.94 E-value=1.4e-24 Score=205.07 Aligned_cols=292 Identities=16% Similarity=0.200 Sum_probs=215.7
Q ss_pred hHHHHHHHHHHHHHHHHH--HHHhhhhhccCCCCchhHHHHHHHHHHHHHH--H-HhcccC----CCCCCchHHHHHHHH
Q 018484 21 WQQFLICSSGFFFGYLVN--GICEEYVYNRLQFSYGWYFTFVQGFVYLVLI--Y-LQGFTT----KQMVNPWKTYVKLSA 91 (355)
Q Consensus 21 ~~~~~~~~~~i~~~~~~~--~~~~k~i~~~~~f~~p~~lt~~Q~~~~~~~~--~-~~~~~~----~~~~~~~~~~~~~s~ 91 (355)
|+.....+.|-..+.+.. +..+.++-++ +++.|.+-++..++.-.++. . ..+.++ +..+.++++|+.+|+
T Consensus 9 ~~~~~~~~lgQ~lsl~~~~t~~~s~~l~~~-~~~~P~~Qs~~~Y~~l~~vy~~~~~~r~~~~~~~~~~~~~~w~y~lla~ 87 (334)
T PF06027_consen 9 RRFWIVLLLGQVLSLCITGTGTFSSLLANK-GVNIPTFQSFFNYVLLALVYTPILLYRRGFKKWLKVLKRPWWKYFLLAL 87 (334)
T ss_pred HHHHHHHHHHHHHHHHHHhHHHHHHHHHhc-CccCcHHHHHHHHHHHHHHHhhhhhhccccccchhhcchhHHHHHHHHH
Confidence 444455555655555443 3456666544 88888766655544322211 1 111111 113467889999999
Q ss_pred HHHhhHHHHHHHhhCCChhHHHHHhhcchHHHHHHHhhhcCCccccChhHHHHHHHHHHHHHHHhccCCCC-----CCCc
Q 018484 92 VLMGSHGLTKGSLAFLNYPAQIMFKSTKVLPVMIMGAFIPGLRRKYPAHEYVAALLLVFGLILFTMADAQT-----SPNF 166 (355)
Q Consensus 92 ~~~~~~~l~~~sL~~~s~~~~~v~ks~~pi~v~l~~~l~~gl~~~~s~~~~~~l~li~~Gv~l~~~~~~~~-----~~~~ 166 (355)
+...+.++.+.|++|++++..+++.++..++++++++++ +|+|+++.+++++++.++|+++....|... +.+.
T Consensus 88 ~Dv~aN~~~v~a~~yTsvtS~~lL~~~~i~~~~~LS~~f--L~~ry~~~~~~gv~i~i~Gv~lv~~sD~~~~~~~~~~~~ 165 (334)
T PF06027_consen 88 LDVEANYLVVLAYQYTSVTSVQLLDCTSIPFVMILSFIF--LKRRYSWFHILGVLICIAGVVLVVVSDVLSGSDSSSGSN 165 (334)
T ss_pred HHHHHHHHHHHHhhcccHhHHHhhhhhhhHHHHHHHHHH--HHhhhhHHHHHHHHHHHhhhhheeeecccccccCCCCCc
Confidence 999999999999999999999999999999999999999 999999999999999999999998887532 2345
Q ss_pred hhhHHHHHHHHHHHHHhHHHHHHHHHhhCCCCChhhHHHHHHHHhHHHHHHHHHhhchHHHHHHHHhhhhHHHHHHHHHH
Q 018484 167 SLIGVLMISGALVMDSFLGNLQEVIFTVNPDTTQMEMLFCSTVVGLPFLLVPMILTGELVRAWNSCSQHLYVYGVLVFEA 246 (355)
Q Consensus 167 ~~~G~~l~l~s~~~~a~~~v~~~~l~~~~~~~~~~~l~~~~~l~~~~~ll~~~~~~ge~~~~~~~~~~~~~~~~~l~l~~ 246 (355)
...|+++++++++++|++++++|+..++. +..+.+....+++.++..+.+... |..+.-+..+ ++....+++..+
T Consensus 166 ~i~GDll~l~~a~lya~~nV~~E~~v~~~---~~~~~lg~~Glfg~ii~~iq~~il-e~~~i~~~~w-~~~~~~~~v~~~ 240 (334)
T PF06027_consen 166 PILGDLLALLGAILYAVSNVLEEKLVKKA---PRVEFLGMLGLFGFIISGIQLAIL-ERSGIESIHW-TSQVIGLLVGYA 240 (334)
T ss_pred cchhHHHHHHHHHHHHHHHHHHHHhcccC---CHHHHHHHHHHHHHHHHHHHHHhe-ehhhhhccCC-ChhhHHHHHHHH
Confidence 79999999999999999999999988764 455666666667766655443322 2222212212 223344444445
Q ss_pred HHHHHHHHHHHHHHHhhchHHHHHHHhHHHHHHHHHHHHHhCCCcccchhhhHHHHHHHHHHHhccCCCCCCCC
Q 018484 247 MATFVGQVSVLSLIALFGAATTAMITTARKAVTLFLSYLIFTKPLTEQHGTGLLLIAMGIILKMLPENKAPANN 320 (355)
Q Consensus 247 ~~~~l~~~~~~~~i~~~sa~t~svv~~~k~v~~i~ls~l~f~~~~t~~~~iG~~lv~~Gv~ly~~~k~~~~~~~ 320 (355)
++.++.+......++..||+..++-....++.++++++++||+++++..++|.++++.|.++|+..+.++.+++
T Consensus 241 ~~lf~~y~l~p~~l~~ssAt~~nLsLLTsd~~ali~~i~~f~~~~~~ly~~af~lIiiG~vvy~~~~~~~~~~~ 314 (334)
T PF06027_consen 241 LCLFLFYSLVPIVLRMSSATFFNLSLLTSDFYALIIDIFFFGYKFSWLYILAFALIIIGFVVYNLAESPEEEAR 314 (334)
T ss_pred HHHHHHHHHHHHHHHhCccceeehHHHHhhHHHHHHHHHhcCccccHHHHHHHHHHHHHhheEEccCCcccccc
Confidence 55556666777889999999999999999999999999999999999999999999999999997766544333
No 12
>COG5070 VRG4 Nucleotide-sugar transporter [Carbohydrate transport and metabolism / Posttranslational modification, protein turnover, chaperones / Intracellular trafficking and secretion]
Probab=99.92 E-value=8.4e-25 Score=189.22 Aligned_cols=284 Identities=15% Similarity=0.207 Sum_probs=223.4
Q ss_pred HHHHHHHHHHhhhhhccCCCCchhHHHHHHHHHHHHHHHH-h--cccCCCCCCchHHHHHHHHHHHhhHHHHHHHhhCCC
Q 018484 32 FFGYLVNGICEEYVYNRLQFSYGWYFTFVQGFVYLVLIYL-Q--GFTTKQMVNPWKTYVKLSAVLMGSHGLTKGSLAFLN 108 (355)
Q Consensus 32 ~~~~~~~~~~~k~i~~~~~f~~p~~lt~~Q~~~~~~~~~~-~--~~~~~~~~~~~~~~~~~s~~~~~~~~l~~~sL~~~s 108 (355)
.++.++....||++.+..+|+....+.+.|.+++++.+.+ + +..+ .|....|+|++++++....++.+..+|+|++
T Consensus 15 c~sSIlmTltNKyVls~~gfnMnflll~vQSlvcvv~l~iLk~l~~~~-fR~t~aK~WfpiSfLLv~MIyt~SKsLqyL~ 93 (309)
T COG5070 15 CFSSILMTLTNKYVLSNLGFNMNFLLLAVQSLVCVVGLLILKFLRLVE-FRLTKAKKWFPISFLLVVMIYTSSKSLQYLA 93 (309)
T ss_pred HHHHHHHHHhhHheecCCCCchhhHHHHHHHHHHHHHHHHHHHHhHhh-eehhhhhhhcCHHHHHHHHHHhcccceeeee
Confidence 3445668888999999999999999999999887654322 2 1111 2345678899999999999999999999999
Q ss_pred hhHHHHHhhcchHHHHHHHhhhcCCccccChhHHHHHHHHHHHHHHHhccCCCCC---CCchhhHHHHHHHHHHHHHhHH
Q 018484 109 YPAQIMFKSTKVLPVMIMGAFIPGLRRKYPAHEYVAALLLVFGLILFTMADAQTS---PNFSLIGVLMISGALVMDSFLG 185 (355)
Q Consensus 109 ~~~~~v~ks~~pi~v~l~~~l~~gl~~~~s~~~~~~l~li~~Gv~l~~~~~~~~~---~~~~~~G~~l~l~s~~~~a~~~ 185 (355)
+|.|+++|..+.+.++..+..+ +++|.+.....+.+++++.-.....+|.+.. .+.--.|++|+...++..+...
T Consensus 94 vpiYTiFKNltII~iAygEvl~--Fgg~vtsl~l~SFilMvlSS~va~w~D~q~~~~~~~~lN~GY~Wm~~NclssaafV 171 (309)
T COG5070 94 VPIYTIFKNLTIILIAYGEVLF--FGGRVTSLELLSFILMVLSSVVATWGDQQASAFKAQILNPGYLWMFTNCLSSAAFV 171 (309)
T ss_pred eeHHHHhccceeehhHhhHHHH--hcCccchhhHHHHHHHHHHHHHhccchhhHHHHHhcccCCceEEEehhhHhHHHHH
Confidence 9999999999999999999999 8999999999999999999999988875322 1122369999999998887665
Q ss_pred HHHHHHHhhCCCCChhhHHHHHHHHhHHHHHHHHHhhchHHHHHHHHhh-hhHHHHHHHHHHHHHHHHHHHHHHHHHhhc
Q 018484 186 NLQEVIFTVNPDTTQMEMLFCSTVVGLPFLLVPMILTGELVRAWNSCSQ-HLYVYGVLVFEAMATFVGQVSVLSLIALFG 264 (355)
Q Consensus 186 v~~~~l~~~~~~~~~~~l~~~~~l~~~~~ll~~~~~~ge~~~~~~~~~~-~~~~~~~l~l~~~~~~l~~~~~~~~i~~~s 264 (355)
...++-.+-. +-..++.++|+|++++|+++...+..+|... -+.... .+.....+.+++++++.-.++.-|+++.+|
T Consensus 172 L~mrkri~lt-Nf~d~dtmfYnNllslPiL~~~s~~~edws~-~n~annl~~d~l~am~ISgl~svgiSy~saWcvrVtS 249 (309)
T COG5070 172 LIMRKRIKLT-NFKDFDTMFYNNLLSLPILLSFSFLFEDWSP-GNLANNLSVDSLMAMFISGLCSVGISYCSAWCVRVTS 249 (309)
T ss_pred HHHHHhhccc-ccchhhHHHHhhhHHHHHHHHHHHHhccCCc-chhhcCCChHHHHHHHHHHHHHhhhhhccceeEeehh
Confidence 4443333322 1235688999999999998766554433211 111111 223445677788888877888999999999
Q ss_pred hHHHHHHHhHHHHHHHHHHHHHhCCCcccchhhhHHHHHHHHHHHhccCCCCCCCC
Q 018484 265 AATTAMITTARKAVTLFLSYLIFTKPLTEQHGTGLLLIAMGIILKMLPENKAPANN 320 (355)
Q Consensus 265 a~t~svv~~~k~v~~i~ls~l~f~~~~t~~~~iG~~lv~~Gv~ly~~~k~~~~~~~ 320 (355)
+++.|++|.++|....+.|.++||++.+...+..+.+.+....+|.+.|.+++++.
T Consensus 250 STtySMvGALNKlp~alaGlvffdap~nf~si~sillGflsg~iYavaks~k~q~q 305 (309)
T COG5070 250 STTYSMVGALNKLPIALAGLVFFDAPVNFLSIFSILLGFLSGAIYAVAKSKKQQNQ 305 (309)
T ss_pred hhHHHHHHHhhhChHHHhhhhhcCCchhHHHHHHHHHHHHHHHHHHHHHHHHHhcC
Confidence 99999999999999999999999999999999999999999999999887655443
No 13
>KOG1442 consensus GDP-fucose transporter [Carbohydrate transport and metabolism; Posttranslational modification, protein turnover, chaperones; Intracellular trafficking, secretion, and vesicular transport]
Probab=99.92 E-value=7.6e-27 Score=207.50 Aligned_cols=295 Identities=13% Similarity=0.116 Sum_probs=237.9
Q ss_pred HHHHHHHHHHHHHHHHHHhhhhhcc--CCCCchhHHHHHHHHHHHHHHHH-----hcccC----CCCCC---chHHHHHH
Q 018484 24 FLICSSGFFFGYLVNGICEEYVYNR--LQFSYGWYFTFVQGFVYLVLIYL-----QGFTT----KQMVN---PWKTYVKL 89 (355)
Q Consensus 24 ~~~~~~~i~~~~~~~~~~~k~i~~~--~~f~~p~~lt~~Q~~~~~~~~~~-----~~~~~----~~~~~---~~~~~~~~ 89 (355)
....+.-.+.+.+...+.||++++. ...+.|.+.++.|+++...++.. .+... +.-+. ..++..|+
T Consensus 29 v~~~vs~ywv~SI~~vf~nk~llss~~~~Ld~plf~t~~qcLvt~~~c~~ls~ls~k~~~~ftfp~~~ldl~t~r~vlpl 108 (347)
T KOG1442|consen 29 VDSAVSLYWVTSIGLVFLNKHLLSSLVVILDAPLFITWYQCLVTTSICLVLSSLSVKYPGLFTFPSLQLDLATARQVLPL 108 (347)
T ss_pred hhhhccceeeeeehhhhhHHHHhhchhhhcCcHHHHHHHHHHHHHHHHHHHHHHHhhccceeccCcccccHHHHHhhcch
Confidence 3334444555566677889999876 45689999999999987654322 11110 11112 23567889
Q ss_pred HHHHHhhHHHHHHHhhCCChhHHHHHhhcchHHHHHHHhhhcCCccccChhHHHHHHHHHHHHHHHhccCCCCCCCchhh
Q 018484 90 SAVLMGSHGLTKGSLAFLNYPAQIMFKSTKVLPVMIMGAFIPGLRRKYPAHEYVAALLLVFGLILFTMADAQTSPNFSLI 169 (355)
Q Consensus 90 s~~~~~~~~l~~~sL~~~s~~~~~v~ks~~pi~v~l~~~l~~gl~~~~s~~~~~~l~li~~Gv~l~~~~~~~~~~~~~~~ 169 (355)
++.+.+++.++|++|+|+++++|.+.|+.+.+|+.++++++ +|++-+..-..+.++++.|--+-.-.|+. ....++.
T Consensus 109 svVfi~mI~fnnlcL~yVgVaFYyvgRsLttvFtVlLtyvl--lkqkTs~~~~~~C~lIi~GF~lGvdqE~~-~~~ls~~ 185 (347)
T KOG1442|consen 109 SVVFILMISFNNLCLKYVGVAFYYVGRSLTTVFTVLLTYVL--LKQKTSFFALGCCLLIILGFGLGVDQEGS-TGTLSWI 185 (347)
T ss_pred hheeeeehhccceehhhcceEEEEeccchhhhHHHHhHHhh--cccccccccceeehhheehheeccccccc-cCccchh
Confidence 99999999999999999999999999999999999999999 99999999999998888886655444432 2356899
Q ss_pred HHHHHHHHHHHHHhHHHHHHHHHhhCCCCChhhHHHHHHHHhHHHHHHHHHhhchHHHHHHHHhh-hhHHHHHHHHHHHH
Q 018484 170 GVLMISGALVMDSFLGNLQEVIFTVNPDTTQMEMLFCSTVVGLPFLLVPMILTGELVRAWNSCSQ-HLYVYGVLVFEAMA 248 (355)
Q Consensus 170 G~~l~l~s~~~~a~~~v~~~~l~~~~~~~~~~~l~~~~~l~~~~~ll~~~~~~ge~~~~~~~~~~-~~~~~~~l~l~~~~ 248 (355)
|.++...|.++.|+..++.+|....-++ ..+.+.+|+|+.++.+++|.+++.||+.+.+.+... ....|..+.+++++
T Consensus 186 GvifGVlaSl~vAlnaiytkk~l~~v~~-~iw~lt~ynnv~a~lLflpll~lnge~~~v~~~~~l~a~~Fw~~mtLsglf 264 (347)
T KOG1442|consen 186 GVIFGVLASLAVALNAIYTKKVLPPVGD-CIWRLTAYNNVNALLLFLPLLILNGEFQAVVGFPHLPAIKFWILMTLSGLF 264 (347)
T ss_pred hhHHHHHHHHHHHHHHHhhheecccccC-eehhhHHHHHHHHHHHHHHHHHHcchHHHHcCcccchHHHHHHHHHHHHHH
Confidence 9999999999999999998876554332 468899999999999999998999998777665432 23467778888888
Q ss_pred HHHHHHHHHHHHHhhchHHHHHHHhHHHHHHHHHHHHHhCCCcccchhhhHHHHHHHHHHHhccCCCCCCCCCC
Q 018484 249 TFVGQVSVLSLIALFGAATTAMITTARKAVTLFLSYLIFTKPLTEQHGTGLLLIAMGIILKMLPENKAPANNRP 322 (355)
Q Consensus 249 ~~l~~~~~~~~i~~~sa~t~svv~~~k~v~~i~ls~l~f~~~~t~~~~iG~~lv~~Gv~ly~~~k~~~~~~~~~ 322 (355)
++..++...+-+|.+||+|+++-++.|.+...++++.+++|.-+..-|-|-.+++.|...|++.|+++.+++.+
T Consensus 265 gF~mgyvTg~QIK~TSplThnISgTAka~aQTvlAv~~y~E~ks~lwwtsn~~vLvgs~~YT~vk~~em~~~~~ 338 (347)
T KOG1442|consen 265 GFAMGYVTGWQIKVTSPLTHNISGTAKAAAQTVLAVAYYSETKSGLWWTSNIVVLVGSLAYTLVKEHEMRKASA 338 (347)
T ss_pred HHHhhheeeEEEEecccceeeecHhHHHHHHHHHHHHHHHHHhhhheeeeeEEEEehhHHHHHHHHHHHHhhcc
Confidence 88888888888999999999999999999999999999999999999999999999999999998876654443
No 14
>PLN00411 nodulin MtN21 family protein; Provisional
Probab=99.90 E-value=4.3e-21 Score=184.55 Aligned_cols=284 Identities=11% Similarity=0.047 Sum_probs=190.7
Q ss_pred HHHHHHHHHHHHHHHhhhhhccCCCCchhHHHHHHHHHHHHHH--H--HhcccCCCCCCchHH---HHHHHHHHHhhHHH
Q 018484 27 CSSGFFFGYLVNGICEEYVYNRLQFSYGWYFTFVQGFVYLVLI--Y--LQGFTTKQMVNPWKT---YVKLSAVLMGSHGL 99 (355)
Q Consensus 27 ~~~~i~~~~~~~~~~~k~i~~~~~f~~p~~lt~~Q~~~~~~~~--~--~~~~~~~~~~~~~~~---~~~~s~~~~~~~~l 99 (355)
....+-.+|..+..+.|..++. +.+ |..+.+.-+.+..+++ + .++.+++.++.+++. +..++++......+
T Consensus 17 ~~~~~q~~~~~~~~~~k~a~~~-G~~-~~~~~~~R~~iA~l~Ll~~~~~~~~~~~~~~~~~~~~~~l~l~g~~g~~~~~~ 94 (358)
T PLN00411 17 AMLATETSVVGISTLFKVATSK-GLN-IYPFLGYSYLLASLLLLPSLFFTNRSRSLPPLSVSILSKIGLLGFLGSMYVIT 94 (358)
T ss_pred HHHHHHHHHHHHHHHHHHHHHC-CCC-ccHHHHHHHHHHHHHHHHHHHHHHHhcccCcchHHHHHHHHHHHHHHHHHHHH
Confidence 3344556666677788888743 433 3446677666643322 1 221111112233443 33445544445557
Q ss_pred HHHHhhCCChhHHHHHhhcchHHHHHHHhhhc----CCccccChhHHHHHHHHHHHHHHHhccCCC--------------
Q 018484 100 TKGSLAFLNYPAQIMFKSTKVLPVMIMGAFIP----GLRRKYPAHEYVAALLLVFGLILFTMADAQ-------------- 161 (355)
Q Consensus 100 ~~~sL~~~s~~~~~v~ks~~pi~v~l~~~l~~----gl~~~~s~~~~~~l~li~~Gv~l~~~~~~~-------------- 161 (355)
.+.+++|++.+...++-++.|++++++++++. +++||.++++++++++.++|+.+....++.
T Consensus 95 ~~~gl~~tsa~~asll~~~~P~~~~lla~~~~~e~~~~~er~~~~~~~G~~l~~~Gv~ll~~~~g~~~~~~~~~~~~~~~ 174 (358)
T PLN00411 95 GYIGIEYSNPTLASAISNITPALTFILAIIFRMEKVSFKERSSVAKVMGTILSLIGALVVIFYHGPRVFVASSPPYLNFR 174 (358)
T ss_pred HHHHHhhccHHHHHHHHHhhHHHHHHHHHHHHhchhhhcccccHHHHHHHHHHHHHHHHHHHccCccccccccccccccc
Confidence 89999999999999999999999999999881 028999999999999999999987643211
Q ss_pred -------CCCCchhhHHHHHHHHHHHHHhHHHHHHHHHhhCCCCChhhHHHHHHHH-hHHHHHHHHHhhchHHHHHHHHh
Q 018484 162 -------TSPNFSLIGVLMISGALVMDSFLGNLQEVIFTVNPDTTQMEMLFCSTVV-GLPFLLVPMILTGELVRAWNSCS 233 (355)
Q Consensus 162 -------~~~~~~~~G~~l~l~s~~~~a~~~v~~~~l~~~~~~~~~~~l~~~~~l~-~~~~ll~~~~~~ge~~~~~~~~~ 233 (355)
.+.+....|.+++++|++++|++.+.+++..++++. .....++...+ +.++.++....+++....+...+
T Consensus 175 ~~~~~~~~~~~~~~lG~~l~l~aa~~wa~~~il~~~~~~~~~~--~~~~t~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~ 252 (358)
T PLN00411 175 QLSPPLSSSNSDWLIGGALLTIQGIFVSVSFILQAHIMSEYPA--AFTVSFLYTVCVSIVTSMIGLVVEKNNPSVWIIHF 252 (358)
T ss_pred ccccccCCCcccHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCc--HhHHHHHHHHHHHHHHHHHHHHHccCCcccceecc
Confidence 001123569999999999999999999998877642 23334443333 33333333333221011110000
Q ss_pred hhhHHHHHHHHHHHHHHHHHHHHHHHHHhhchHHHHHHHhHHHHHHHHHHHHHhCCCcccchhhhHHHHHHHHHHHhccC
Q 018484 234 QHLYVYGVLVFEAMATFVGQVSVLSLIALFGAATTAMITTARKAVTLFLSYLIFTKPLTEQHGTGLLLIAMGIILKMLPE 313 (355)
Q Consensus 234 ~~~~~~~~l~l~~~~~~l~~~~~~~~i~~~sa~t~svv~~~k~v~~i~ls~l~f~~~~t~~~~iG~~lv~~Gv~ly~~~k 313 (355)
....+..+. .++.+.+++.++++++++.||..+++..++.|+++.++|++++||++++.+++|.++++.|+.+..+.+
T Consensus 253 -~~~~~~i~y-~~i~t~lay~lw~~~v~~~ga~~as~~~~L~PV~a~llg~l~LgE~lt~~~~iG~~LIl~Gv~l~~~~~ 330 (358)
T PLN00411 253 -DITLITIVT-MAIITSVYYVIHSWTVRHKGPLYLAIFKPLSILIAVVMGAIFLNDSLYLGCLIGGILITLGFYAVMWGK 330 (358)
T ss_pred -chHHHHHHH-HHHHHHHHHHHHHHHHhccCchHHHHHHhHHHHHHHHHHHHHhCCCCcHHHHHHHHHHHHHHHHHHhhh
Confidence 112222222 233445788899999999999999999999999999999999999999999999999999999988655
Q ss_pred CCC
Q 018484 314 NKA 316 (355)
Q Consensus 314 ~~~ 316 (355)
++|
T Consensus 331 ~~~ 333 (358)
T PLN00411 331 ANE 333 (358)
T ss_pred hhh
Confidence 443
No 15
>PRK11453 O-acetylserine/cysteine export protein; Provisional
Probab=99.88 E-value=2.7e-19 Score=168.80 Aligned_cols=275 Identities=12% Similarity=0.176 Sum_probs=189.9
Q ss_pred HHHHHHHHHHHhhhhhccCCCCchhHHHHHHHHHHHHHHHHhcccCCCCCCchHHHHHHHHHH-HhhHHHHHHHhhC-CC
Q 018484 31 FFFGYLVNGICEEYVYNRLQFSYGWYFTFVQGFVYLVLIYLQGFTTKQMVNPWKTYVKLSAVL-MGSHGLTKGSLAF-LN 108 (355)
Q Consensus 31 i~~~~~~~~~~~k~i~~~~~f~~p~~lt~~Q~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~-~~~~~l~~~sL~~-~s 108 (355)
..+.+.+.....|.... +++ |..+++..+++..+.......+ ++.+++.....+++. .+...+.+.+++| +|
T Consensus 12 ~~~~Wg~~~~~~k~~~~--~~~-p~~~~~~R~~~a~~~l~~~~~~---~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~ 85 (299)
T PRK11453 12 VVVVWGLNFVVIKVGLH--NMP-PLMLAGLRFMLVAFPAIFFVAR---PKVPLNLLLGYGLTISFGQFAFLFCAINFGMP 85 (299)
T ss_pred HHHHHhhhHHHHHHHHh--cCC-HHHHHHHHHHHHHHHHHHHhcC---CCCchHHHHHHHHHHHHHHHHHHHHHHHhcCC
Confidence 34444455556676653 344 7888888877643322221111 123445444455543 3444566788888 68
Q ss_pred hhHHHHHhhcchHHHHHHHhhhcCCccccChhHHHHHHHHHHHHHHHhccCCCCCCCchhhHHHHHHHHHHHHHhHHHHH
Q 018484 109 YPAQIMFKSTKVLPVMIMGAFIPGLRRKYPAHEYVAALLLVFGLILFTMADAQTSPNFSLIGVLMISGALVMDSFLGNLQ 188 (355)
Q Consensus 109 ~~~~~v~ks~~pi~v~l~~~l~~gl~~~~s~~~~~~l~li~~Gv~l~~~~~~~~~~~~~~~G~~l~l~s~~~~a~~~v~~ 188 (355)
.+...++-++.|++++++++++ +|||+++++++++++.++|+.+....+.. +.+.++.|..+++++.+++|.+.+++
T Consensus 86 a~~a~~l~~~~pi~~~ll~~~~--l~e~~~~~~~~~~~l~~~Gv~ll~~~~~~-~~~~~~~G~~l~l~aal~~a~~~v~~ 162 (299)
T PRK11453 86 AGLASLVLQAQAFFTIVLGAFT--FGERLQGKQLAGIALAIFGVLVLIEDSLN-GQHVAMLGFMLTLAAAFSWACGNIFN 162 (299)
T ss_pred HHHHHHHHHhHHHHHHHHHHHH--hcCcCcHHHHHHHHHHHHhHHHhccccCC-CcchhHHHHHHHHHHHHHHHHHHHHH
Confidence 8999999999999999999999 89999999999999999999988754322 12335679999999999999999999
Q ss_pred HHHHhhCCCCChhhHHHHHHHHhHHHHHHH-HHhhchHHHHHHHHhhhhHH-HHHHHHHHHHHHHHHHHHHHHHHhhchH
Q 018484 189 EVIFTVNPDTTQMEMLFCSTVVGLPFLLVP-MILTGELVRAWNSCSQHLYV-YGVLVFEAMATFVGQVSVLSLIALFGAA 266 (355)
Q Consensus 189 ~~l~~~~~~~~~~~l~~~~~l~~~~~ll~~-~~~~ge~~~~~~~~~~~~~~-~~~l~l~~~~~~l~~~~~~~~i~~~sa~ 266 (355)
+|..++++.........+..+++...+... ...+++.....+....++.. +..+.+..+++.+++.+++..+++.++.
T Consensus 163 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~i~~t~~~~~l~~~~l~~~~a~ 242 (299)
T PRK11453 163 KKIMSHSTRPAVMSLVVWSALIPIIPFFVASLILDGSATMIHSLVTIDMTTILSLMYLAFVATIVGYGIWGTLLGRYETW 242 (299)
T ss_pred HHHhcccCccchhHHHHHHHHHHHHHHHHHHHHhcCchhhhhhhccCCHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCHH
Confidence 887654432222333444444433222211 12222211000000112222 3445555677788899999999999999
Q ss_pred HHHHHHhHHHHHHHHHHHHHhCCCcccchhhhHHHHHHHHHHHhccCC
Q 018484 267 TTAMITTARKAVTLFLSYLIFTKPLTEQHGTGLLLIAMGIILKMLPEN 314 (355)
Q Consensus 267 t~svv~~~k~v~~i~ls~l~f~~~~t~~~~iG~~lv~~Gv~ly~~~k~ 314 (355)
+.+++..+.|+++.++|++++||++++.+++|.+++++|+.+..+.++
T Consensus 243 ~~s~~~~l~Pv~a~~~~~l~lgE~~~~~~~iG~~lI~~gv~l~~~~~~ 290 (299)
T PRK11453 243 RVAPLSLLVPVVGLASAALLLDERLTGLQFLGAVLIMAGLYINVFGLR 290 (299)
T ss_pred HHHHHHHHHHHHHHHHHHHHhCCCccHHHHHHHHHHHHHHHHHhcchh
Confidence 999999999999999999999999999999999999999998876654
No 16
>PRK11689 aromatic amino acid exporter; Provisional
Probab=99.87 E-value=1.7e-19 Score=169.87 Aligned_cols=262 Identities=12% Similarity=-0.030 Sum_probs=179.5
Q ss_pred HHHHHHhhhhhccCCCCchhHHHHHHHHHHHHHHHHhcccCCCCCCchHHHHHHHHHHHhhHHHHHHHhhC----CChhH
Q 018484 36 LVNGICEEYVYNRLQFSYGWYFTFVQGFVYLVLIYLQGFTTKQMVNPWKTYVKLSAVLMGSHGLTKGSLAF----LNYPA 111 (355)
Q Consensus 36 ~~~~~~~k~i~~~~~f~~p~~lt~~Q~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~l~~~sL~~----~s~~~ 111 (355)
...-...|.... +++ |..+.+..+....++......+++.++.+++..+..++.+.+...+.+.+++| .+...
T Consensus 17 g~~~~~~k~~~~--~~~-P~~~~~~R~~~a~l~l~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~a~~~~~~~~~a~~ 93 (295)
T PRK11689 17 STMVGLIRGVSE--SLG-PVGGAAMIYSVSGLLLLLTVGFPRLRQFPKRYLLAGGLLFVSYEICLALSLGYANTRRQAIE 93 (295)
T ss_pred HHHHHHHHHHHc--cCC-hHHHHHHHHHHHHHHHHHHccccccccccHHHHHHHhHHHHHHHHHHHHHHHHhhccccchH
Confidence 333445666543 344 78888888776544433222222222333333333344445566666677765 56667
Q ss_pred HHHHhhcchHHHHHHHhhhcCCccccChhHHHHHHHHHHHHHHHhccCCCC-------CCCchhhHHHHHHHHHHHHHhH
Q 018484 112 QIMFKSTKVLPVMIMGAFIPGLRRKYPAHEYVAALLLVFGLILFTMADAQT-------SPNFSLIGVLMISGALVMDSFL 184 (355)
Q Consensus 112 ~~v~ks~~pi~v~l~~~l~~gl~~~~s~~~~~~l~li~~Gv~l~~~~~~~~-------~~~~~~~G~~l~l~s~~~~a~~ 184 (355)
..++.++.|++++++++++ +|||+++++++++++.++|+++....+... +..++..|++++++|.+++|.+
T Consensus 94 a~~l~~~~Pi~~~ll~~~~--~~e~~~~~~~~g~~l~~~Gv~li~~~~~~~~~~~~~~~~~~~~~G~~~~l~aa~~~A~~ 171 (295)
T PRK11689 94 VGMVNYLWPSLTILFAVLF--NGQKANWLLIPGLLLALAGVAWVLGGDNGLSLAELINNIASNPLSYGLAFIGAFIWAAY 171 (295)
T ss_pred HHHHHHHhHHHHHHHHHHH--hcCCccHHHHHHHHHHHHhHhheecCCccchhhhhhhccccChHHHHHHHHHHHHHHHH
Confidence 7889999999999999999 899999999999999999999887554211 1113457999999999999999
Q ss_pred HHHHHHHHhhCCCCChhhHHHHHHHHhHHHHHHHHHhhchHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHHHHHhhc
Q 018484 185 GNLQEVIFTVNPDTTQMEMLFCSTVVGLPFLLVPMILTGELVRAWNSCSQHLYVYGVLVFEAMATFVGQVSVLSLIALFG 264 (355)
Q Consensus 185 ~v~~~~l~~~~~~~~~~~l~~~~~l~~~~~ll~~~~~~ge~~~~~~~~~~~~~~~~~l~l~~~~~~l~~~~~~~~i~~~s 264 (355)
.++.||..++. ++....+ ..+...+.+.....++.. ...++..+..++..++.+.+++.++++.+++.+
T Consensus 172 ~v~~k~~~~~~---~~~~~~~---~~~~~~l~~~~~~~~~~~-----~~~~~~~~~~l~~~~~~t~~~~~l~~~al~~~~ 240 (295)
T PRK11689 172 CNVTRKYARGK---NGITLFF---ILTALALWIKYFLSPQPA-----MVFSLPAIIKLLLAAAAMGFGYAAWNVGILHGN 240 (295)
T ss_pred HHHHhhccCCC---CchhHHH---HHHHHHHHHHHHHhcCcc-----ccCCHHHHHHHHHHHHHHHHHHHHHHHHHHccC
Confidence 99998865443 2322211 122222222222222211 011223344444555677889999999999999
Q ss_pred hHHHHHHHhHHHHHHHHHHHHHhCCCcccchhhhHHHHHHHHHHHhccC
Q 018484 265 AATTAMITTARKAVTLFLSYLIFTKPLTEQHGTGLLLIAMGIILKMLPE 313 (355)
Q Consensus 265 a~t~svv~~~k~v~~i~ls~l~f~~~~t~~~~iG~~lv~~Gv~ly~~~k 313 (355)
|..+++..++.|+++++++++++||++++.+++|.++++.|+.+.....
T Consensus 241 a~~~s~~~~l~Pv~a~i~~~~~lgE~~~~~~~iG~~lI~~gv~~~~~~~ 289 (295)
T PRK11689 241 MTLLATASYFTPVLSAALAALLLSTPLSFSFWQGVAMVTAGSLLCWLAT 289 (295)
T ss_pred HHHHHHHHHhHHHHHHHHHHHHhCCCCcHHHHHHHHHHHHhHHHHhhhH
Confidence 9999999999999999999999999999999999999999998775433
No 17
>TIGR00950 2A78 Carboxylate/Amino Acid/Amine Transporter.
Probab=99.87 E-value=1.2e-19 Score=167.32 Aligned_cols=251 Identities=14% Similarity=0.085 Sum_probs=186.0
Q ss_pred HHhhhhhccCCCCchhHHHHHHHHHHHHHHHH-hcccCCCCCCchHHHHHHHH-HHHhhHHHHHHHhhCCChhHHHHHhh
Q 018484 40 ICEEYVYNRLQFSYGWYFTFVQGFVYLVLIYL-QGFTTKQMVNPWKTYVKLSA-VLMGSHGLTKGSLAFLNYPAQIMFKS 117 (355)
Q Consensus 40 ~~~k~i~~~~~f~~p~~lt~~Q~~~~~~~~~~-~~~~~~~~~~~~~~~~~~s~-~~~~~~~l~~~sL~~~s~~~~~v~ks 117 (355)
+..|+.++. ...+..+.+.+++++.++..+ ...+ +++.+++.+...+. +..+...+.+.|++|+|.+..+++.+
T Consensus 6 ~~~k~~~~~--~~~~~~~~~~r~~~~~l~l~~~~~~~--~~~~~~~~~~~~~~~~~~l~~~~~~~a~~~~~~~~~~ii~~ 81 (260)
T TIGR00950 6 VVIGQYLEG--QVPLYFAVFRRLIFALLLLLPLLRRR--PPLKRLLRLLLLGALQIGVFYVLYFVAVKRLPVGEAALLLY 81 (260)
T ss_pred HHHHHHHhc--CCCHHHHHHHHHHHHHHHHHHHHHhc--cCHhHHHHHHHHHHHHHHHHHHHHHHHHHhcChhhhHHHHh
Confidence 345665533 245678888887776544322 1122 22334444555554 45677888999999999999999999
Q ss_pred cchHHHHHHHhhhcCCccccChhHHHHHHHHHHHHHHHhccCCCCCCCchhhHHHHHHHHHHHHHhHHHHHHHHHhhCCC
Q 018484 118 TKVLPVMIMGAFIPGLRRKYPAHEYVAALLLVFGLILFTMADAQTSPNFSLIGVLMISGALVMDSFLGNLQEVIFTVNPD 197 (355)
Q Consensus 118 ~~pi~v~l~~~l~~gl~~~~s~~~~~~l~li~~Gv~l~~~~~~~~~~~~~~~G~~l~l~s~~~~a~~~v~~~~l~~~~~~ 197 (355)
+.|+++++++.++ +|||++++++.++++.++|+.+....+. .+.+..|+.+++++.++++.+.++.|+..++.+.
T Consensus 82 ~~P~~~~~~~~l~--~~e~~~~~~~~gi~i~~~Gv~li~~~~~---~~~~~~G~~~~l~a~~~~a~~~~~~k~~~~~~~~ 156 (260)
T TIGR00950 82 LAPLYVTLLSDLM--GKERPRKLVLLAAVLGLAGAVLLLSDGN---LSINPAGLLLGLGSGISFALGTVLYKRLVKKEGP 156 (260)
T ss_pred hhHHHHHHHHHHH--ccCCCcHHHHHHHHHHHHhHHhhccCCc---ccccHHHHHHHHHHHHHHHHHHHHHhHHhhcCCc
Confidence 9999999999999 8999999999999999999998765431 2345789999999999999999999887654321
Q ss_pred CChhhHHHHHHHHhHHHHHHHHHhhchHHHHHHHHhhhhHHH-HHHHHHHHHHHHHHHHHHHHHHhhchHHHHHHHhHHH
Q 018484 198 TTQMEMLFCSTVVGLPFLLVPMILTGELVRAWNSCSQHLYVY-GVLVFEAMATFVGQVSVLSLIALFGAATTAMITTARK 276 (355)
Q Consensus 198 ~~~~~l~~~~~l~~~~~ll~~~~~~ge~~~~~~~~~~~~~~~-~~l~l~~~~~~l~~~~~~~~i~~~sa~t~svv~~~k~ 276 (355)
++.....+...++.+++.+.....++... . ++..+ ..+....+.+.+++.+++..+++.++.+.++...++|
T Consensus 157 -~~~~~~~~~~~~~~~~l~~~~~~~~~~~~-----~-~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~s~~~~~~p 229 (260)
T TIGR00950 157 -ELLQFTGWVLLLGALLLLPFAWFLGPNPQ-----A-LSLQWGALLYLGLIGTALAYFLWNKGLTLVDPSAASILALAEP 229 (260)
T ss_pred -hHHHHHHHHHHHHHHHHHHHHHhcCCCCC-----c-chHHHHHHHHHHHHHHHHHHHHHHHHHhcCCchHHHHHHHHHH
Confidence 22333334556666665555444332111 0 11223 3444555666788999999999999999999999999
Q ss_pred HHHHHHHHHHhCCCcccchhhhHHHHHHHH
Q 018484 277 AVTLFLSYLIFTKPLTEQHGTGLLLIAMGI 306 (355)
Q Consensus 277 v~~i~ls~l~f~~~~t~~~~iG~~lv~~Gv 306 (355)
+++.+++++++||++++.+++|.++++.|+
T Consensus 230 v~~~ll~~~~~~E~~~~~~~~G~~li~~g~ 259 (260)
T TIGR00950 230 LVALLLGLLILGETLSLPQLIGGALIIAAV 259 (260)
T ss_pred HHHHHHHHHHhCCCCCHHHHHHHHHHHHhc
Confidence 999999999999999999999999999986
No 18
>PRK10532 threonine and homoserine efflux system; Provisional
Probab=99.86 E-value=7.3e-19 Score=165.42 Aligned_cols=285 Identities=12% Similarity=0.049 Sum_probs=193.6
Q ss_pred eCCCCchhHHHHHHHHHHHHHHHHHHHHhhhhhccCCCCchhHHHHHHHHHHHHHHHH-h-cccCCCCCCchHHHHHHHH
Q 018484 14 SLSDRPRWQQFLICSSGFFFGYLVNGICEEYVYNRLQFSYGWYFTFVQGFVYLVLIYL-Q-GFTTKQMVNPWKTYVKLSA 91 (355)
Q Consensus 14 ~~~~~~~~~~~~~~~~~i~~~~~~~~~~~k~i~~~~~f~~p~~lt~~Q~~~~~~~~~~-~-~~~~~~~~~~~~~~~~~s~ 91 (355)
+..+.|++.-..++..+.. ++...+...|+.++. ++ |..+.+.+++...++... . ..+++.++..++..+..++
T Consensus 4 ~~~~~~~~~~~~~~~la~~-~~~~~~~~~K~~~~~--~~-~~~~~~~R~~~a~l~l~~~~~~~~~~~~~~~~~~~~~~g~ 79 (293)
T PRK10532 4 SLRKLPVWLPILLLLIAMA-SIQSGASLAKSLFPL--VG-APGVTALRLALGTLILIAIFKPWRLRFAKEQRLPLLFYGV 79 (293)
T ss_pred cccccccchHHHHHHHHHH-HHHhhHHHHHHHHHH--cC-HHHHHHHHHHHHHHHHHHHHhHHhccCCHHHHHHHHHHHH
Confidence 4456677655555554443 333555677887643 44 577888888876543322 1 1111112233444556777
Q ss_pred HHHhhHHHHHHHhhCCChhHHHHHhhcchHHHHHHHhhhcCCccccChhHHHHHHHHHHHHHHHhccCCCCCCCchhhHH
Q 018484 92 VLMGSHGLTKGSLAFLNYPAQIMFKSTKVLPVMIMGAFIPGLRRKYPAHEYVAALLLVFGLILFTMADAQTSPNFSLIGV 171 (355)
Q Consensus 92 ~~~~~~~l~~~sL~~~s~~~~~v~ks~~pi~v~l~~~l~~gl~~~~s~~~~~~l~li~~Gv~l~~~~~~~~~~~~~~~G~ 171 (355)
+......+.+++++|+|.+..+++..+.|+++++++ +|++++. ..+.+.++|+.+....+.. ..+.+..|.
T Consensus 80 ~~~~~~~~~~~al~~~~~~~a~~l~~t~Pi~~~ll~------~~~~~~~--~~~~i~~~Gv~li~~~~~~-~~~~~~~G~ 150 (293)
T PRK10532 80 SLGGMNYLFYLSIQTVPLGIAVALEFTGPLAVALFS------SRRPVDF--VWVVLAVLGLWFLLPLGQD-VSHVDLTGA 150 (293)
T ss_pred HHHHHHHHHHHHHhcccHHHHHHHHHHHHHHHHHHh------cCChHHH--HHHHHHHHHHheeeecCCC-cccCChHHH
Confidence 777777888999999999999999999999998764 3444443 4456778998876533221 123457899
Q ss_pred HHHHHHHHHHHhHHHHHHHHHhhCCCCChhhHHHHHHHHhHHHHHHHHHhhchHHHHHHHHhhhhHHH-HHHHHHHHHHH
Q 018484 172 LMISGALVMDSFLGNLQEVIFTVNPDTTQMEMLFCSTVVGLPFLLVPMILTGELVRAWNSCSQHLYVY-GVLVFEAMATF 250 (355)
Q Consensus 172 ~l~l~s~~~~a~~~v~~~~l~~~~~~~~~~~l~~~~~l~~~~~ll~~~~~~ge~~~~~~~~~~~~~~~-~~l~l~~~~~~ 250 (355)
++.+++.+++|.+.+..|+..+++ ++... .+..+++...+.+.....+.. . ..++..+ ..+.+..+++.
T Consensus 151 ll~l~aa~~~a~~~v~~r~~~~~~---~~~~~-~~~~~~~~~~l~~~~~~~~~~-~-----~~~~~~~~~~l~lgv~~t~ 220 (293)
T PRK10532 151 ALALGAGACWAIYILSGQRAGAEH---GPATV-AIGSLIAALIFVPIGALQAGE-A-----LWHWSILPLGLAVAILSTA 220 (293)
T ss_pred HHHHHHHHHHHHHHHHHHHHhccC---CchHH-HHHHHHHHHHHHHHHHHccCc-c-----cCCHHHHHHHHHHHHHHHH
Confidence 999999999999999988876543 23333 333455544444433332210 0 0111222 23455567778
Q ss_pred HHHHHHHHHHHhhchHHHHHHHhHHHHHHHHHHHHHhCCCcccchhhhHHHHHHHHHHHhccCCCCCCCCC
Q 018484 251 VGQVSVLSLIALFGAATTAMITTARKAVTLFLSYLIFTKPLTEQHGTGLLLIAMGIILKMLPENKAPANNR 321 (355)
Q Consensus 251 l~~~~~~~~i~~~sa~t~svv~~~k~v~~i~ls~l~f~~~~t~~~~iG~~lv~~Gv~ly~~~k~~~~~~~~ 321 (355)
+++.++++.+++.+|..+++...++|+++.++|++++||++++.+++|.+++++|++.+.+..+++.+-|+
T Consensus 221 ~~~~l~~~~~~~~~a~~as~~~~l~Pv~a~l~~~l~lgE~~~~~~~iG~~lIl~~~~~~~~~~~~~~~~~~ 291 (293)
T PRK10532 221 LPYSLEMIALTRLPTRTFGTLMSMEPALAAVSGMIFLGETLTLIQWLALGAIIAASMGSTLTIRREPKIKE 291 (293)
T ss_pred HHHHHHHHHHHhcChhHHHHHHHhHHHHHHHHHHHHhCCCCcHHHHHHHHHHHHHHHHHHhcCCCCCCCCC
Confidence 88889999999999999999999999999999999999999999999999999999999877655544444
No 19
>PRK11272 putative DMT superfamily transporter inner membrane protein; Provisional
Probab=99.85 E-value=1.9e-18 Score=162.45 Aligned_cols=267 Identities=12% Similarity=0.089 Sum_probs=185.9
Q ss_pred HHHHHHHHHHHhhhhhccCCCCchhHHHHHHHHHHHHHH--HHhcccC-CCCCCchHHHHHHHHHH-HhhHHHHHHHh-h
Q 018484 31 FFFGYLVNGICEEYVYNRLQFSYGWYFTFVQGFVYLVLI--YLQGFTT-KQMVNPWKTYVKLSAVL-MGSHGLTKGSL-A 105 (355)
Q Consensus 31 i~~~~~~~~~~~k~i~~~~~f~~p~~lt~~Q~~~~~~~~--~~~~~~~-~~~~~~~~~~~~~s~~~-~~~~~l~~~sL-~ 105 (355)
..+.+.+....-|.... +. .|..+++..+++..++. +....++ .+++.+++.....+.+. .....+.+.+. +
T Consensus 16 ~~~iWg~~~~~~K~~~~--~~-~p~~~~~~R~~~a~l~ll~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~ 92 (292)
T PRK11272 16 LYIIWGSTYLVIRIGVE--SW-PPLMMAGVRFLIAGILLLAFLLLRGHPLPTLRQWLNAALIGLLLLAVGNGMVTVAEHQ 92 (292)
T ss_pred HHHHHhhHHHHHHHHhc--cC-CHHHHHHHHHHHHHHHHHHHHHHhCCCCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHc
Confidence 33333444445565542 33 47888888888764432 2221111 11222344444566554 35566778888 8
Q ss_pred CCChhHHHHHhhcchHHHHHHHhhhcCCccccChhHHHHHHHHHHHHHHHhccCCCCCCCchhhHHHHHHHHHHHHHhHH
Q 018484 106 FLNYPAQIMFKSTKVLPVMIMGAFIPGLRRKYPAHEYVAALLLVFGLILFTMADAQTSPNFSLIGVLMISGALVMDSFLG 185 (355)
Q Consensus 106 ~~s~~~~~v~ks~~pi~v~l~~~l~~gl~~~~s~~~~~~l~li~~Gv~l~~~~~~~~~~~~~~~G~~l~l~s~~~~a~~~ 185 (355)
+++.+..+++-++.|+++++++.+ +|||+++++++++++.++|+.+....+. .+.+..|..+.+++.+++|.+.
T Consensus 93 ~~~a~~a~~l~~~~Pl~~~lla~~---~~e~~~~~~~~~~~la~~Gv~ll~~~~~---~~~~~~G~l~~l~a~~~~a~~~ 166 (292)
T PRK11272 93 NVPSGIAAVVVATVPLFTLCFSRL---FGIRTRKLEWLGIAIGLAGIVLLNSGGN---LSGNPWGAILILIASASWAFGS 166 (292)
T ss_pred cCcHHHHHHHHHHHHHHHHHHHHH---hcccCchhHHHHHHHHHHhHHHHhcCcc---cccchHHHHHHHHHHHHHHHHH
Confidence 999999999999999999999974 4899999999999999999988754321 1335679999999999999999
Q ss_pred HHHHHHHhhCCCCChhhHHHHHHHHhHHHHHHHHHhhchHHHHHHHHhhhhHHH-HHHHHHHHHHHHHHHHHHHHHHhhc
Q 018484 186 NLQEVIFTVNPDTTQMEMLFCSTVVGLPFLLVPMILTGELVRAWNSCSQHLYVY-GVLVFEAMATFVGQVSVLSLIALFG 264 (355)
Q Consensus 186 v~~~~l~~~~~~~~~~~l~~~~~l~~~~~ll~~~~~~ge~~~~~~~~~~~~~~~-~~l~l~~~~~~l~~~~~~~~i~~~s 264 (355)
+..||..++ ++.....+...++.+.+.+.....++.... ..++..| ..+.+..+++.+++.+++..+++.+
T Consensus 167 ~~~~~~~~~----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----~~~~~~~~~i~~l~i~~s~~~~~l~~~~~~~~~ 238 (292)
T PRK11272 167 VWSSRLPLP----VGMMAGAAEMLAAGVVLLIASLLSGERLTA----LPTLSGFLALGYLAVFGSIIAISAYMYLLRNVR 238 (292)
T ss_pred HHHHhcCCC----cchHHHHHHHHHHHHHHHHHHHHcCCcccc----cCCHHHHHHHHHHHHHHHHHHHHHHHHHHhhcC
Confidence 988775332 122334455555555444433332221100 0112223 3444445667788999999999999
Q ss_pred hHHHHHHHhHHHHHHHHHHHHHhCCCcccchhhhHHHHHHHHHHHhccCC
Q 018484 265 AATTAMITTARKAVTLFLSYLIFTKPLTEQHGTGLLLIAMGIILKMLPEN 314 (355)
Q Consensus 265 a~t~svv~~~k~v~~i~ls~l~f~~~~t~~~~iG~~lv~~Gv~ly~~~k~ 314 (355)
+...++...++|+++.++|++++||++|+.+++|.++++.|+++.+..++
T Consensus 239 ~~~~s~~~~l~Pi~a~i~~~~~l~E~~t~~~iiG~~lIi~gv~~~~~~~~ 288 (292)
T PRK11272 239 PALATSYAYVNPVVAVLLGTGLGGETLSPIEWLALGVIVFAVVLVTLGKY 288 (292)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHcCCCCcHHHHHHHHHHHHHHHHHHHHHh
Confidence 99999999999999999999999999999999999999999998876444
No 20
>PRK15430 putative chloramphenical resistance permease RarD; Provisional
Probab=99.82 E-value=1e-17 Score=157.85 Aligned_cols=258 Identities=9% Similarity=0.085 Sum_probs=173.0
Q ss_pred HHHHHHHHhhhhhccCCCCchhHHHHHHHHHHHHHH--HHhcccCC-C---CCCchHHH--HHH-HHHHHhhHHHHHHHh
Q 018484 34 GYLVNGICEEYVYNRLQFSYGWYFTFVQGFVYLVLI--YLQGFTTK-Q---MVNPWKTY--VKL-SAVLMGSHGLTKGSL 104 (355)
Q Consensus 34 ~~~~~~~~~k~i~~~~~f~~p~~lt~~Q~~~~~~~~--~~~~~~~~-~---~~~~~~~~--~~~-s~~~~~~~~l~~~sL 104 (355)
.+...+...|.. .+.+ |..+++.+++++.++. .....++. + +..+++.+ ... ++.......+.++++
T Consensus 19 ~wg~~~~~~k~~---~~~~-~~~~~~~R~~~a~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~ 94 (296)
T PRK15430 19 IWGIAPAYFKLI---YYVP-ADEILTHRVIWSFFFMVVLMSICRQWSYLKTLIQTPQKIFMLAVSAVLIGGNWLLFIWAV 94 (296)
T ss_pred HHHHHHHHHHHh---cCCC-HHHHHHHHHHHHHHHHHHHHHHHccHHHHHHHHcCHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 344455555654 2344 7888899988764322 11111110 0 01123332 223 344567788999999
Q ss_pred hCCChhHHHHHhhcchHHHHHHHhhhcCCccccChhHHHHHHHHHHHHHHHhccCCCCCCCchhhHHHHHHHHHHHHHhH
Q 018484 105 AFLNYPAQIMFKSTKVLPVMIMGAFIPGLRRKYPAHEYVAALLLVFGLILFTMADAQTSPNFSLIGVLMISGALVMDSFL 184 (355)
Q Consensus 105 ~~~s~~~~~v~ks~~pi~v~l~~~l~~gl~~~~s~~~~~~l~li~~Gv~l~~~~~~~~~~~~~~~G~~l~l~s~~~~a~~ 184 (355)
+++|.+..+++..+.|++++++++++ +|||++++++.++++.++|+++....++ +.. .+.+++.+++|.+
T Consensus 95 ~~~~~~~a~~l~~~~Pi~v~l~~~~~--l~E~~~~~~~~g~~l~~~Gv~li~~~~~----~~~----~~~l~aa~~~a~~ 164 (296)
T PRK15430 95 NNHHMLEASLGYFINPLVNIVLGMIF--LGERFRRMQWLAVILAICGVLVQLWTFG----SLP----IIALGLAFSFAFY 164 (296)
T ss_pred hcCchHHHHHHHHHHHHHHHHHHHHH--hcCCCcHHHHHHHHHHHHHHHHHHHHcC----Ccc----HHHHHHHHHHHHH
Confidence 99999999999999999999999999 8999999999999999999998764321 111 3567788899999
Q ss_pred HHHHHHHHhhCCCCChhhHHHHHHHHhHHHHHHHHHhhchHHHHHHHHhhhhH-HHHHHHHHHHHHHHHHHHHHHHHHhh
Q 018484 185 GNLQEVIFTVNPDTTQMEMLFCSTVVGLPFLLVPMILTGELVRAWNSCSQHLY-VYGVLVFEAMATFVGQVSVLSLIALF 263 (355)
Q Consensus 185 ~v~~~~l~~~~~~~~~~~l~~~~~l~~~~~ll~~~~~~ge~~~~~~~~~~~~~-~~~~l~l~~~~~~l~~~~~~~~i~~~ 263 (355)
.+++|+..++. ..+......+...++.+...+ ...+.. ......+. .+..++..++.+.+++.+++..+++.
T Consensus 165 ~i~~r~~~~~~-~~~~~~~~~~~~~~~~~~~~~---~~~~~~---~~~~~~~~~~~~~~~~~g~~t~i~~~~~~~a~~~~ 237 (296)
T PRK15430 165 GLVRKKIAVEA-QTGMLIETMWLLPVAAIYLFA---IADSST---SHMGQNPMSLNLLLIAAGIVTTVPLLCFTAAATRL 237 (296)
T ss_pred HHHHHhcCCCC-chhHHHHHHHHHHHHHHHHHH---HccCCc---ccccCCcHHHHHHHHHHHHHHHHHHHHHHHHHhcC
Confidence 88887753211 111122222333333222111 111100 00011122 22334444556778999999999999
Q ss_pred chHHHHHHHhHHHHHHHHHHHHHhCCCcccchhhhHHHHHHHHHHHhcc
Q 018484 264 GAATTAMITTARKAVTLFLSYLIFTKPLTEQHGTGLLLIAMGIILKMLP 312 (355)
Q Consensus 264 sa~t~svv~~~k~v~~i~ls~l~f~~~~t~~~~iG~~lv~~Gv~ly~~~ 312 (355)
+|..+++...++|++++++|++++||++++.+++|+++++.|+.+....
T Consensus 238 ~a~~~s~~~~l~Pv~a~~~g~l~l~E~~~~~~~~G~~lI~~~~~v~~~~ 286 (296)
T PRK15430 238 RLSTLGFFQYIGPTLMFLLAVTFYGEKPGADKMVTFAFIWVALAIFVMD 286 (296)
T ss_pred CHHHHHHHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHHHHH
Confidence 9999999999999999999999999999999999999998888776543
No 21
>TIGR03340 phn_DUF6 phosphonate utilization associated putative membrane protein. This family of hydrophobic proteins has some homology to families of integral membrane proteins such as (pfam00892) and may be a permease. It occurs in the vicinity of various types of operons for the catabolism of phosphonates in Vibrio, Pseudomonas, Polaromonas and Thiomicrospira.
Probab=99.77 E-value=1.3e-16 Score=149.23 Aligned_cols=210 Identities=11% Similarity=0.071 Sum_probs=154.3
Q ss_pred HHHHHHhhHHHHHHHhhCCChhHHHHHhhcchHHHHHHHhhhcCCccccChhHHHHHHHHHHHHHHHhccCCCCCCCchh
Q 018484 89 LSAVLMGSHGLTKGSLAFLNYPAQIMFKSTKVLPVMIMGAFIPGLRRKYPAHEYVAALLLVFGLILFTMADAQTSPNFSL 168 (355)
Q Consensus 89 ~s~~~~~~~~l~~~sL~~~s~~~~~v~ks~~pi~v~l~~~l~~gl~~~~s~~~~~~l~li~~Gv~l~~~~~~~~~~~~~~ 168 (355)
.+........+.+.++++.|.+....+.++.|++++++++++ +|||+++++++++.+++.|+.+....+.. +.+.
T Consensus 69 ~~~~~~~~~~~~~~a~~~~~~~~~~~l~~~~p~~~~l~~~~~--~~e~~~~~~~~g~~~~~~Gv~ll~~~~~~---~~~~ 143 (281)
T TIGR03340 69 SAVANMVYFLGLAQAYHHADVGLVYPLARSSPLLVAIWATLT--LGETLSPLAWLGILIITLGLLVLGLSRFA---QHRR 143 (281)
T ss_pred HHHHHHHHHHHHHHHHhcCChhhhhhHHhhhHHHHHHHHHHH--HcCCCCHHHHHHHHHHHHHHHHHhccccc---ccch
Confidence 344566778888999999999999999999999999999999 89999999999999999999988754422 2345
Q ss_pred hHHHHHHHHHHHHHhHHHHHHHHHhhCCC-CChhhHHHHHHHHh-HHHHHHHHHhhchHHHHHHHHhhhhHHHHHHHHHH
Q 018484 169 IGVLMISGALVMDSFLGNLQEVIFTVNPD-TTQMEMLFCSTVVG-LPFLLVPMILTGELVRAWNSCSQHLYVYGVLVFEA 246 (355)
Q Consensus 169 ~G~~l~l~s~~~~a~~~v~~~~l~~~~~~-~~~~~l~~~~~l~~-~~~ll~~~~~~ge~~~~~~~~~~~~~~~~~l~l~~ 246 (355)
.|..+.+++.++++.+.+..|+..++.+. .+......+..+.. .++... ....++.. .. ......+..+...+
T Consensus 144 ~g~~~~l~aal~~a~~~i~~k~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~--~~--~~~~~~~~~~~~~~ 218 (281)
T TIGR03340 144 KAYAWALAAALGTAIYSLSDKAAALGVPAFYSALGYLGIGFLAMGWPFLLL-YLKRHGRS--MF--PYARQILPSATLGG 218 (281)
T ss_pred hHHHHHHHHHHHHHHhhhhccccccchhcccccHHHHHHHHHHHHHHHHHH-HHHHhccc--hh--hhHHHHHHHHHHHH
Confidence 78888999999999988876654322211 11111112222211 222211 11111100 00 11112334556667
Q ss_pred HHHHHHHHHHHHHHHhhchHHHHHHHhHHHHHHHHHHHHHhCCCcccchhhhHHHHHHHHHH
Q 018484 247 MATFVGQVSVLSLIALFGAATTAMITTARKAVTLFLSYLIFTKPLTEQHGTGLLLIAMGIIL 308 (355)
Q Consensus 247 ~~~~l~~~~~~~~i~~~sa~t~svv~~~k~v~~i~ls~l~f~~~~t~~~~iG~~lv~~Gv~l 308 (355)
+.+.+++.+++..+++.++...+....+.|+++.++|++++||++++.+++|.++++.|+.+
T Consensus 219 ~~s~l~~~l~~~al~~~~a~~~~~~~~l~pv~a~l~g~~~lgE~~~~~~~iG~~lil~Gv~l 280 (281)
T TIGR03340 219 LMIGGAYALVLWAMTRLPVATVVALRNTSIVFAVVLGIWFLNERWYLTRLMGVCIIVAGLVV 280 (281)
T ss_pred HHHHHHHHHHHHHHhhCCceEEEeecccHHHHHHHHHHHHhCCCccHHHHHHHHHHHHhHHh
Confidence 77888999999999999999999999999999999999999999999999999999999875
No 22
>PF03151 TPT: Triose-phosphate Transporter family; InterPro: IPR004853 This family consists entirely of aligned regions from Drosophila melanogaster proteins. O49724 from SWISSPROT contains three repeats of this region. In other proteins, the aligned region is located towards the C terminus. The function of the aligned region is unknown.
Probab=99.74 E-value=9.1e-17 Score=136.29 Aligned_cols=142 Identities=15% Similarity=0.257 Sum_probs=120.0
Q ss_pred HHHHHHHHHHHHHhHHHHHHHHHhhC----CCCChhhHHHHHHHHhHHHHHHHHHhhchHHHHHHH--Hhh-----hhHH
Q 018484 170 GVLMISGALVMDSFLGNLQEVIFTVN----PDTTQMEMLFCSTVVGLPFLLVPMILTGELVRAWNS--CSQ-----HLYV 238 (355)
Q Consensus 170 G~~l~l~s~~~~a~~~v~~~~l~~~~----~~~~~~~l~~~~~l~~~~~ll~~~~~~ge~~~~~~~--~~~-----~~~~ 238 (355)
|++++++|.++.|++++++|+.+++. .+.++.++++|+++.+++++++..+..++....... ... .+..
T Consensus 1 G~~~~l~s~~~~al~~v~~~~~~~~~~~~~~~~~~~~l~~~~~~~s~~~l~~~~~~~e~~~~~~~~~~~~~~~~~~~~~~ 80 (153)
T PF03151_consen 1 GFILALASSLFSALRNVLIKKLLKKVSSNSKKLNPLNLLYYNSPISFIILLPLAFLLEGPQLSSFFSEIFGEELSSDPNF 80 (153)
T ss_pred CHHHHHHHHHHHHHHHHHHHHHHhcccccccCCCHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhHHHHhhhhhhcchHHH
Confidence 78899999999999999999998874 356789999999999999888876655443211111 111 2345
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHhhchHHHHHHHhHHHHHHHHHHHHHhCCCcccchhhhHHHHHHHHHHHhc
Q 018484 239 YGVLVFEAMATFVGQVSVLSLIALFGAATTAMITTARKAVTLFLSYLIFTKPLTEQHGTGLLLIAMGIILKML 311 (355)
Q Consensus 239 ~~~l~l~~~~~~l~~~~~~~~i~~~sa~t~svv~~~k~v~~i~ls~l~f~~~~t~~~~iG~~lv~~Gv~ly~~ 311 (355)
+..++.+++.+++.|++.+.+++++||+++++++.+|+++++++|+++|||++|+.+++|+++++.|+++|+|
T Consensus 81 ~~~~~~~~~~~~~~n~~~f~~i~~tS~lt~~v~~~~K~~~~i~~s~~~f~~~~t~~~~~G~~l~~~G~~~Ysy 153 (153)
T PF03151_consen 81 IFLLILSGLLAFLYNLSSFLLIKLTSPLTYSVLGNVKRILVILLSVIFFGEPITPLQIIGIVLALVGVLLYSY 153 (153)
T ss_pred HHHHHHHHHHHHHHHHHHHHHhhhcChhHHHHHHHHHHHHHHHHHhhhcCCcCCHHHHHHHHHHHHHHheeeC
Confidence 6677888999999999999999999999999999999999999999999999999999999999999999986
No 23
>COG0697 RhaT Permeases of the drug/metabolite transporter (DMT) superfamily [Carbohydrate transport and metabolism / Amino acid transport and metabolism / General function prediction only]
Probab=99.73 E-value=1.8e-14 Score=134.02 Aligned_cols=210 Identities=16% Similarity=0.193 Sum_probs=157.3
Q ss_pred HHHHHHhhHHHHHHHhhCCChhHHHHHhhcchHHHHHHHh-hhcCCccccChhHHHHHHHHHHHHHHHhccCCCCCCCch
Q 018484 89 LSAVLMGSHGLTKGSLAFLNYPAQIMFKSTKVLPVMIMGA-FIPGLRRKYPAHEYVAALLLVFGLILFTMADAQTSPNFS 167 (355)
Q Consensus 89 ~s~~~~~~~~l~~~sL~~~s~~~~~v~ks~~pi~v~l~~~-l~~gl~~~~s~~~~~~l~li~~Gv~l~~~~~~~~~~~~~ 167 (355)
..+.......+.+.++++++.+..+++.++.|+++.+++. ++ ++||++++++.++++..+|+.+....+...... .
T Consensus 76 ~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~p~~~~~~~~~~~--~~e~~~~~~~~~~~~~~~Gv~lv~~~~~~~~~~-~ 152 (292)
T COG0697 76 ALLGLALPFLLLFLALKYTSASVASLIIGLLPLFTALLAVLLL--LGERLSLLQILGILLALAGVLLILLGGGGGGIL-S 152 (292)
T ss_pred HHHHHHHHHHHHHHHHhhcchHHHHHHHHHHHHHHHHHHHHHH--ccCCCcHHHHHHHHHHHHhHHheecCCCcchhH-H
Confidence 3455567778889999999999999999999999999996 66 699999999999999999999998766432211 4
Q ss_pred hhHHHHHHHHHHHHHhHHHHHHHHHhhCCCCChhhHHH-HHHHHhHHHHHHHHHhhchHHHHHHHHhhhhHHHH-HHHHH
Q 018484 168 LIGVLMISGALVMDSFLGNLQEVIFTVNPDTTQMEMLF-CSTVVGLPFLLVPMILTGELVRAWNSCSQHLYVYG-VLVFE 245 (355)
Q Consensus 168 ~~G~~l~l~s~~~~a~~~v~~~~l~~~~~~~~~~~l~~-~~~l~~~~~ll~~~~~~ge~~~~~~~~~~~~~~~~-~l~l~ 245 (355)
..|..+.+.+.++.|++.+..++.. +. +...... +... ........... .+.. .......+. .....
T Consensus 153 ~~g~~~~l~a~~~~a~~~~~~~~~~-~~---~~~~~~~~~~~~-~~~~~~~~~~~-~~~~-----~~~~~~~~~~~~~~g 221 (292)
T COG0697 153 LLGLLLALAAALLWALYTALVKRLS-RL---GPVTLALLLQLL-LALLLLLLFFL-SGFG-----APILSRAWLLLLYLG 221 (292)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhc-CC---ChHHHHHHHHHH-HHHHHHHHHHh-cccc-----ccCCHHHHHHHHHHH
Confidence 7899999999999999999988776 32 2333333 2222 11111111111 1100 001111222 33333
Q ss_pred HHHHHHHHHHHHHHHHhhchHHHHHHHhHHHHHHHHHHHHHhCCCcccchhhhHHHHHHHHHHHhcc
Q 018484 246 AMATFVGQVSVLSLIALFGAATTAMITTARKAVTLFLSYLIFTKPLTEQHGTGLLLIAMGIILKMLP 312 (355)
Q Consensus 246 ~~~~~l~~~~~~~~i~~~sa~t~svv~~~k~v~~i~ls~l~f~~~~t~~~~iG~~lv~~Gv~ly~~~ 312 (355)
.+.+.+++.+++..+++.++...++...+.++.+++++++++||+++..+++|..+++.|+.+....
T Consensus 222 ~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~l~~~e~~~~~~~~G~~li~~g~~l~~~~ 288 (292)
T COG0697 222 VFSTGLAYLLWYYALRLLGASLVALLSLLEPVFAALLGVLLLGEPLSPAQLLGAALVVLGVLLASLR 288 (292)
T ss_pred HHHHHHHHHHHHHHHHhcCchHHHHHHHHHHHHHHHHHHHHhCCCCcHHHHHHHHHHHHHHHHHhcc
Confidence 3444478999999999999999999999999999999999999999999999999999999998866
No 24
>PF04142 Nuc_sug_transp: Nucleotide-sugar transporter; InterPro: IPR007271 This family of membrane proteins transport nucleotide sugars from the cytoplasm into golgi vesicles. P78382 from SWISSPROT transports CMP-sialic acid, P78381 from SWISSPROT transports UDP-galactose and Q9Y2D2 from SWISSPROT transports UDP-GlcNAc. This family has some but not complete overlap with the UDP-galactose transporter family IPR004689 from INTERPRO.; GO: 0005351 sugar:hydrogen symporter activity, 0008643 carbohydrate transport, 0000139 Golgi membrane, 0016021 integral to membrane
Probab=99.72 E-value=2.8e-16 Score=143.46 Aligned_cols=212 Identities=18% Similarity=0.251 Sum_probs=162.1
Q ss_pred hHHHHHHHHHHHhhHHHHHHHhhCCChhHHHHHhhcchHHHHHHHhhhcCCccccChhHHHHHHHHHHHHHHHhccCCCC
Q 018484 83 WKTYVKLSAVLMGSHGLTKGSLAFLNYPAQIMFKSTKVLPVMIMGAFIPGLRRKYPAHEYVAALLLVFGLILFTMADAQT 162 (355)
Q Consensus 83 ~~~~~~~s~~~~~~~~l~~~sL~~~s~~~~~v~ks~~pi~v~l~~~l~~gl~~~~s~~~~~~l~li~~Gv~l~~~~~~~~ 162 (355)
..++...+++|.....+.+.++++++.+++++++.++.++++++++++ +|||.+++||.++++.++|+++....+...
T Consensus 17 ~~~~~vPA~lY~~qn~L~~~al~~ld~~t~qvl~q~kIl~TAl~s~~~--L~r~ls~~qW~aL~lL~~Gv~lv~~~~~~~ 94 (244)
T PF04142_consen 17 TLKLAVPALLYAIQNNLQFVALSYLDPSTFQVLSQSKILFTALFSVLL--LKRRLSRRQWLALFLLVAGVVLVQLSSSQS 94 (244)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhCCHHHHHHHHhhHHHHHHHHHHHH--HHcccchhhHHHHHHHHHHHheeecCCccc
Confidence 345667789999999999999999999999999999999999999999 899999999999999999999987654322
Q ss_pred -----C--------CCchhhHHHHHHHHHHHHHhHHHHHHHHHhhCCCCChhhHHHHHHHHhHHHHHHHHHhhchHHHHH
Q 018484 163 -----S--------PNFSLIGVLMISGALVMDSFLGNLQEVIFTVNPDTTQMEMLFCSTVVGLPFLLVPMILTGELVRAW 229 (355)
Q Consensus 163 -----~--------~~~~~~G~~l~l~s~~~~a~~~v~~~~l~~~~~~~~~~~l~~~~~l~~~~~ll~~~~~~ge~~~~~ 229 (355)
+ ......|+++++++++++|+.+++.||++|+.+ .+.+.......+++.++.++..... |..+..
T Consensus 95 ~~~~~~~~~~~~~~~~~~~~G~~~vl~~~~~S~~agVy~E~~lK~~~-~s~~~~N~qL~~~gi~~~~~~~~~~-~~~~~~ 172 (244)
T PF04142_consen 95 SDNSSSSSVHHDASNQNPLLGLLAVLAAAFLSGFAGVYFEKLLKRSN-VSLWIQNMQLYLFGILFNLLALLLS-DGSAIS 172 (244)
T ss_pred cccccccccccccccchhHhHHHHHHHHHHHHHHHHHHHHHHhcccc-hhHHHHHHHHHHHHHHHHHHHHhcc-cccccc
Confidence 0 123579999999999999999999999999764 3333333333455555554443332 111100
Q ss_pred --HHHhhh-hHHHHHHHHHHHHHHHHHHHHHHHHHhhchHHHHHHHhHHHHHHHHHHHHHhCCCcccchhhhHHHH
Q 018484 230 --NSCSQH-LYVYGVLVFEAMATFVGQVSVLSLIALFGAATTAMITTARKAVTLFLSYLIFTKPLTEQHGTGLLLI 302 (355)
Q Consensus 230 --~~~~~~-~~~~~~l~l~~~~~~l~~~~~~~~i~~~sa~t~svv~~~k~v~~i~ls~l~f~~~~t~~~~iG~~lv 302 (355)
.+...+ +..|. ..+...++-+..-.++|+.+...-+....+.-+++.++|+++||.++|....+|..++
T Consensus 173 ~~g~f~G~~~~~~~----~i~~~a~gGllva~v~KyadnI~K~fa~a~siv~t~~~s~~lf~~~~s~~f~lg~~~V 244 (244)
T PF04142_consen 173 ESGFFHGYSWWVWI----VIFLQAIGGLLVAFVLKYADNIVKGFATAVSIVLTAVLSVLLFGFPPSLSFLLGAALV 244 (244)
T ss_pred cCCchhhcchHHHH----HHHHHHHhhHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHhCCCCchHHhhheecC
Confidence 111111 11222 2345556777788899999999999999999999999999999999999999998753
No 25
>KOG2234 consensus Predicted UDP-galactose transporter [Carbohydrate transport and metabolism]
Probab=99.70 E-value=3.3e-15 Score=139.14 Aligned_cols=234 Identities=19% Similarity=0.191 Sum_probs=172.9
Q ss_pred HHHHHHHHHhhHHHHHHHhhCCChhHHHHHhhcchHHHHHHHhhhcCCccccChhHHHHHHHHHHHHHHHhccCC---C-
Q 018484 86 YVKLSAVLMGSHGLTKGSLAFLNYPAQIMFKSTKVLPVMIMGAFIPGLRRKYPAHEYVAALLLVFGLILFTMADA---Q- 161 (355)
Q Consensus 86 ~~~~s~~~~~~~~l~~~sL~~~s~~~~~v~ks~~pi~v~l~~~l~~gl~~~~s~~~~~~l~li~~Gv~l~~~~~~---~- 161 (355)
....+++|+...-+.+.++.+++.+++++.-..+.+.|+++..++ +|||.+++||.++++.++|+++.-.+.. .
T Consensus 95 ~~vPa~iYalqNnl~yval~~ldaatyqVt~qlKI~tTA~f~vl~--L~rkLs~~Qw~Al~lL~~Gv~~vQ~~~~~~~~a 172 (345)
T KOG2234|consen 95 VSVPALIYALQNNLQYVALSNLDAATYQVTYQLKILTTAIFSVLI--LRRKLSRLQWMALVLLFAGVALVQLPSLSPTGA 172 (345)
T ss_pred HHHHHHHHHHhhhHHHHHHhcCCchhhhhhhhHHHHHHHHHHHHH--HhhhhhHHHHHHHHHHHHHHHHHhccCCCCCCc
Confidence 445678898888899999999999999999999999999999999 9999999999999999999999873221 1
Q ss_pred ---CCCCchhhHHHHHHHHHHHHHhHHHHHHHHHhhCCCCChhhHHHHHHHHhHHHHHHHHHhhchHHHH-H-HHHhhhh
Q 018484 162 ---TSPNFSLIGVLMISGALVMDSFLGNLQEVIFTVNPDTTQMEMLFCSTVVGLPFLLVPMILTGELVRA-W-NSCSQHL 236 (355)
Q Consensus 162 ---~~~~~~~~G~~l~l~s~~~~a~~~v~~~~l~~~~~~~~~~~l~~~~~l~~~~~ll~~~~~~ge~~~~-~-~~~~~~~ 236 (355)
...+..+.|+..++.+++++++.++|.|+++|+.. .+.+-.......++.++.+..++.. |.... + .+...+.
T Consensus 173 ~~~~~~~n~~~G~~avl~~c~~SgfAgvYfEkiLK~s~-~s~wi~NiqL~~~g~~f~~l~~~~~-d~~~i~~~gff~G~s 250 (345)
T KOG2234|consen 173 KSESSAQNPFLGLVAVLVACFLSGFAGVYFEKILKGSN-VSLWIRNIQLYFFGILFNLLTILLQ-DGEAINEYGFFYGYS 250 (345)
T ss_pred cCCCcccchhhhHHHHHHHHHHHHHHHHHHHHHHhcCC-chHHHHHHHHHHHHHHHHHHHHhhc-cccccccCCcccccc
Confidence 11245699999999999999999999999998653 3333222223345555554444433 21111 1 1222232
Q ss_pred H-HHHHHHHHHHHHHHHHHHHHHHHHhhchHHHHHHHhHHHHHHHHHHHHHhCCCcccchhhhHHHHHHHHHHHhccCCC
Q 018484 237 Y-VYGVLVFEAMATFVGQVSVLSLIALFGAATTAMITTARKAVTLFLSYLIFTKPLTEQHGTGLLLIAMGIILKMLPENK 315 (355)
Q Consensus 237 ~-~~~~l~l~~~~~~l~~~~~~~~i~~~sa~t~svv~~~k~v~~i~ls~l~f~~~~t~~~~iG~~lv~~Gv~ly~~~k~~ 315 (355)
. .|..++ ...++-+.+..++|+.+...-.....+..+++.+.|+.+||.++|....+|+.+++..+.+|...+.+
T Consensus 251 ~~vw~vVl----~~a~gGLlvs~v~KyADnIlK~f~~s~aiilt~v~S~~Lf~~~~t~~F~lG~~lVi~Si~lY~~~P~~ 326 (345)
T KOG2234|consen 251 SIVWLVVL----LNAVGGLLVSLVMKYADNILKGFSTSVAIILTTVASIALFDFQLTLYFLLGALLVILSIFLYSLYPAR 326 (345)
T ss_pred HHHHHHHH----HHhccchhHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHccCCchHHHHHHHHHHHHHHHHhhcCCcc
Confidence 2 333333 33455667778888888888888888888999999999999999999999999999999999944444
Q ss_pred CCCCCCCCCcCCCCCC
Q 018484 316 APANNRPNSHNNVKRR 331 (355)
Q Consensus 316 ~~~~~~~~~~~~~~~~ 331 (355)
+ +.++++..+.+
T Consensus 327 ~----~~~~~~~~~~~ 338 (345)
T KOG2234|consen 327 D----AQKNYNPLEAQ 338 (345)
T ss_pred c----ccccCCCCccc
Confidence 3 23334444444
No 26
>TIGR00803 nst UDP-galactose transporter. NSTs generally appear to function by antiport mechanisms, exchanging a nucleotide-sugar for a nucleotide. Thus, CMP-sialic acid is exchanged for CMP; GDP-mannose is preferentially exchanged for GMP, and UDP-galactose and UDP-N-acetylglucosamine are exchanged for UMP (or possibly UDP). Other nucleotide sugars (e.g., GDP-fucose, UDP-xylose, UDP-glucose, UDP-N-acetylgalactosamine, etc.) may also be transported in exchange for various nucleotides, but their transporters have not been molecularly characterized. Each compound appears to be translocated by its own transport protein. Transport allows the compound, synthesized in the cytoplasm, to be exported to the lumen of the Golgi apparatus or the endoplasmic reticulum where it is used for the synthesis of glycoproteins and glycolipids.
Probab=99.68 E-value=1.8e-16 Score=143.21 Aligned_cols=192 Identities=15% Similarity=0.232 Sum_probs=143.2
Q ss_pred CChhHHHHHhhcchHHHHHHHhhhcCCccccChhHHHHHHHHHHHHHHHhccCCCC-----------------------C
Q 018484 107 LNYPAQIMFKSTKVLPVMIMGAFIPGLRRKYPAHEYVAALLLVFGLILFTMADAQT-----------------------S 163 (355)
Q Consensus 107 ~s~~~~~v~ks~~pi~v~l~~~l~~gl~~~~s~~~~~~l~li~~Gv~l~~~~~~~~-----------------------~ 163 (355)
+++|.++.+|+++++++++.++.+ +++|++..++++..+++.|+......|.+. .
T Consensus 2 isvPa~~~~~s~~l~~v~l~~~~~--~~~~~~~~~i~~~~l~~~g~l~~~ls~~q~~al~~l~~~~~~~~~~~~~~~~~~ 79 (222)
T TIGR00803 2 LSVPIHIIFKQNNLVLIALGNLLA--AGKQVTQLKILSTALMTLGSLVASLGDDQWFSLKLLKLGVAIVQMVQSSAKTLM 79 (222)
T ss_pred ccccchHHHHhcchHHHHHhcccc--cceeeehHHHHHHHHHHHHHHHhHhhHHHHHHHHHHHHhHeeeecCCCCccccc
Confidence 689999999999999999999999 799999999999999999998654433210 1
Q ss_pred CCchhhHHHHHHHHHHHHHhHHHHHHHHHhhCCCCChhhHHHHHHHHhHHHHHHHHHhhchHHH------HHHHHhhhhH
Q 018484 164 PNFSLIGVLMISGALVMDSFLGNLQEVIFTVNPDTTQMEMLFCSTVVGLPFLLVPMILTGELVR------AWNSCSQHLY 237 (355)
Q Consensus 164 ~~~~~~G~~l~l~s~~~~a~~~v~~~~l~~~~~~~~~~~l~~~~~l~~~~~ll~~~~~~ge~~~------~~~~~~~~~~ 237 (355)
.+..+.|..+.+.++.++++.++++|+..++++ .++|.+.+.+++..+.....++..+ ...+...+|.
T Consensus 80 ~g~~~~g~~~~l~a~~~~~~~~~y~e~~~k~~~------~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 153 (222)
T TIGR00803 80 FGNPVVGLSAVLSALLSSGFAGVYFEKILKDGD------TMFWSRNLQLPLFGLFSTFSVLLWSDGTLISNFGFFIGYPT 153 (222)
T ss_pred cccHHHHHHHHHHHHHHHhhhHHHHHHcccCCC------CchHHHHHHHHHHHHHHHHHHHhhcccchhhccCcccCCch
Confidence 134578888899999999999999999766432 2355555555443322111111111 1111122333
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhhchHHHHHHHhHHHHHHHHHHHHHhCCCcccchhhhHHHHHHHHHHH
Q 018484 238 VYGVLVFEAMATFVGQVSVLSLIALFGAATTAMITTARKAVTLFLSYLIFTKPLTEQHGTGLLLIAMGIILK 309 (355)
Q Consensus 238 ~~~~l~l~~~~~~l~~~~~~~~i~~~sa~t~svv~~~k~v~~i~ls~l~f~~~~t~~~~iG~~lv~~Gv~ly 309 (355)
....+ .+.+..++.+..+++++.|+++.+++.++|++++.++|+++|||+++..+++|+.+++.|+.+|
T Consensus 154 ~~~~~---~~~~a~~~~~v~~vlk~~~~~~~~~~~~~~~~~s~lls~~~f~~~ls~~~~~g~~lV~~~~~lY 222 (222)
T TIGR00803 154 AVWIV---GLLNVGGGLCIGGVVRYADNTTKSFVTALSIILSTLASVRLFDAKISSTFYLGAILVFLATFLY 222 (222)
T ss_pred HHHHH---HHHHHhcCceeeehhHHhHHHHHHHHHHHHHHHHHHHHHHHhcCCccHHHHHHHHHHHeeeEeC
Confidence 22222 2445677888999999999999999999999999999999999999999999999999998775
No 27
>KOG3912 consensus Predicted integral membrane protein [General function prediction only]
Probab=99.66 E-value=9.9e-15 Score=130.93 Aligned_cols=228 Identities=17% Similarity=0.219 Sum_probs=175.9
Q ss_pred chHH--HHHHHHHHHhhHHHHHHHhhCCChhHHHHHhhcchHHHHHHHhhhcCCccccChhHHHHHHHHHHHHHHHhccC
Q 018484 82 PWKT--YVKLSAVLMGSHGLTKGSLAFLNYPAQIMFKSTKVLPVMIMGAFIPGLRRKYPAHEYVAALLLVFGLILFTMAD 159 (355)
Q Consensus 82 ~~~~--~~~~s~~~~~~~~l~~~sL~~~s~~~~~v~ks~~pi~v~l~~~l~~gl~~~~s~~~~~~l~li~~Gv~l~~~~~ 159 (355)
|++. +++.++|-..+..+.+.+|.+++.+.+|++|-...+||-+++..+ ++++...++|+++..+.+|+++....|
T Consensus 83 pf~p~lfl~Pal~Di~gsslm~vgL~lTsASsfQMlRGaviIFvglfst~~--Ln~ti~~~qWl~i~fv~lGlviVg~~d 160 (372)
T KOG3912|consen 83 PFNPVLFLPPALCDIAGSSLMYVGLNLTSASSFQMLRGAVIIFVGLFSTMF--LNRTITGRQWLGILFVSLGLVIVGSLD 160 (372)
T ss_pred CCCcceecChHHHHHhhhHHHHHHHHHhhHHHHHHhhcchhhhhHHHHHHH--HhcccchhhHHHHHHHHhhhheeeeee
Confidence 5554 456789998888899999999999999999999999999999999 899999999999999999999998775
Q ss_pred CCC------CCCchhhHHHHHHHHHHHHHhHHHHHHHHHhhCCCCChhhHHHHHHHHhHHHHHH---HH--Hhhch----
Q 018484 160 AQT------SPNFSLIGVLMISGALVMDSFLGNLQEVIFTVNPDTTQMEMLFCSTVVGLPFLLV---PM--ILTGE---- 224 (355)
Q Consensus 160 ~~~------~~~~~~~G~~l~l~s~~~~a~~~v~~~~l~~~~~~~~~~~l~~~~~l~~~~~ll~---~~--~~~ge---- 224 (355)
... +.+.-..|.++.+++-+.-|++.++.||.++++ +.++.+..-|-.+++..++-. ++ +..|+
T Consensus 161 ~~~~~~p~~d~s~iitGdllIiiaqiivaiQ~v~Eek~l~~~-nV~pl~avg~eGlfG~v~~slL~i~m~yi~~~~sfS~ 239 (372)
T KOG3912|consen 161 VHLVTDPYTDYSSIITGDLLIIIAQIIVAIQMVCEEKQLKKS-NVAPLQAVGWEGLFGLVILSLLAIPMYYIPSGDSFSC 239 (372)
T ss_pred cccccCCccccccchhhhHHHHHHHHHHHHHHHHHHhhhhhc-cCCHHHHhhhhhhHHHHHHHHHHHHHhheecCCcCcC
Confidence 422 123458999999999999999999999998876 356777777766666443311 11 11121
Q ss_pred --------HHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHHHHHhhchHHHHHHHhHHHHHHHHHHHHHhCCCcccchh
Q 018484 225 --------LVRAWNSCSQHLYVYGVLVFEAMATFVGQVSVLSLIALFGAATTAMITTARKAVTLFLSYLIFTKPLTEQHG 296 (355)
Q Consensus 225 --------~~~~~~~~~~~~~~~~~l~l~~~~~~l~~~~~~~~i~~~sa~t~svv~~~k~v~~i~ls~l~f~~~~t~~~~ 296 (355)
..+.+....+.|.....+....++-++-|+......+..||+|-.+.-.+|..+..++++..+.|.+...|+
T Consensus 240 ~~~g~~eD~~~~~~~~~e~p~l~val~~~~vSiAffNfaGlsitk~~SattRmllD~lRt~~IWv~si~m~~E~f~llqi 319 (372)
T KOG3912|consen 240 NPRGVLEDWGDAFAALQESPSLAVALIGFTVSIAFFNFAGLSITKELSATTRMLLDSLRTYVIWVFSIAMGWEYFHLLQI 319 (372)
T ss_pred CCCcchhhHHHHHHHhcCCchhHHHHhhhhhheeeeeehhhHHHHHhhHHHHHHHHhhhhhhhhHhHHHHHHHHHHHHHH
Confidence 111222223334322222222222234466777889999999999999999999999999999999999999
Q ss_pred hhHHHHHHHHHHHhcc
Q 018484 297 TGLLLIAMGIILKMLP 312 (355)
Q Consensus 297 iG~~lv~~Gv~ly~~~ 312 (355)
.|.++.+.|+++|.-.
T Consensus 320 lGFliLi~Gi~lY~~i 335 (372)
T KOG3912|consen 320 LGFLILIMGIILYNQI 335 (372)
T ss_pred HHHHHHHHHHHHHHHH
Confidence 9999999999999744
No 28
>KOG2765 consensus Predicted membrane protein [Function unknown]
Probab=99.61 E-value=5.6e-15 Score=137.59 Aligned_cols=227 Identities=14% Similarity=0.158 Sum_probs=178.1
Q ss_pred HHHHHhhHHHHHHHhhCCChhHHHHHhhcchHHHHHHHhhhcCCccccChhHHHHHHHHHHHHHHHhccCCCC----CCC
Q 018484 90 SAVLMGSHGLTKGSLAFLNYPAQIMFKSTKVLPVMIMGAFIPGLRRKYPAHEYVAALLLVFGLILFTMADAQT----SPN 165 (355)
Q Consensus 90 s~~~~~~~~l~~~sL~~~s~~~~~v~ks~~pi~v~l~~~l~~gl~~~~s~~~~~~l~li~~Gv~l~~~~~~~~----~~~ 165 (355)
+.+.+...++.|.||+|.+++..+++-|++-+||..++.++ ..+|+++.+.+++++.+.|+++.+.+|+.. .+.
T Consensus 166 c~lWF~anl~~naALa~TsVAS~TilSStSs~FtL~la~if--~~e~ft~sKllav~~si~GViiVt~~~s~~~~~~~a~ 243 (416)
T KOG2765|consen 166 CPLWFLANLTSNAALAFTSVASTTILSSTSSFFTLFLAAIF--PVERFTLSKLLAVFVSIAGVIIVTMGDSKQNSDLPAS 243 (416)
T ss_pred HHHHHHHHHHHHHHhhhhhhhhhhhhhhcchHHHHHHHHHc--CcchhhHHHHHHHHHhhccEEEEEeccccccccCCcc
Confidence 34445778889999999999999999999999999999999 689999999999999999999999987632 233
Q ss_pred chhhHHHHHHHHHHHHHhHHHHHHHHHhhCC-CCChhhHHHHHHHHhHHHHHHHHHhhchHHHHHHHH-hhhhHHHHHHH
Q 018484 166 FSLIGVLMISGALVMDSFLGNLQEVIFTVNP-DTTQMEMLFCSTVVGLPFLLVPMILTGELVRAWNSC-SQHLYVYGVLV 243 (355)
Q Consensus 166 ~~~~G~~l~l~s~~~~a~~~v~~~~l~~~~~-~~~~~~l~~~~~l~~~~~ll~~~~~~ge~~~~~~~~-~~~~~~~~~l~ 243 (355)
....|.++++++++.+|.+.++.+|-..+++ +.+.-...-|..++.+.+++|++++-+ ....-.+. .+.......++
T Consensus 244 ~~llG~llaL~sA~~YavY~vllk~~~~~eg~rvdi~lffGfvGLfnllllwP~l~iL~-~~~~e~F~lP~~~q~~~vv~ 322 (416)
T KOG2765|consen 244 RPLLGNLLALLSALLYAVYTVLLKRKIGDEGERVDIQLFFGFVGLFNLLLLWPPLIILD-FFGEERFELPSSTQFSLVVF 322 (416)
T ss_pred chhHHHHHHHHHHHHHHHHHHHHHhhcccccccccHHHHHHHHHHHHHHHHhHHHHHHH-HhccCcccCCCCceeEeeeH
Confidence 4689999999999999999999888766663 444323333667777777777655331 11000010 11112223455
Q ss_pred HHHHHHHHHHHHHHHHHHhhchHHHHHHHhHHHHHHHHHHHHHhCCCcccchhhhHHHHHHHHHHHhccCCCCCCC
Q 018484 244 FEAMATFVGQVSVLSLIALFGAATTAMITTARKAVTLFLSYLIFTKPLTEQHGTGLLLIAMGIILKMLPENKAPAN 319 (355)
Q Consensus 244 l~~~~~~l~~~~~~~~i~~~sa~t~svv~~~k~v~~i~ls~l~f~~~~t~~~~iG~~lv~~Gv~ly~~~k~~~~~~ 319 (355)
.+++.+++.-++|....-.++|++.++..++.-..+++..+++-|+++|+.+++|...+++|.+.-++...-.++.
T Consensus 323 ~~ligtvvSDylW~~a~~lTs~Lv~TlgmSltIPLA~~aD~l~k~~~~S~~~iiGsi~Ifv~Fv~vn~~~~~~~~~ 398 (416)
T KOG2765|consen 323 NNLIGTVVSDYLWAKAVLLTSPLVVTLGMSLTIPLAMFADVLIKGKHPSALYIIGSIPIFVGFVIVNISSENSKKD 398 (416)
T ss_pred hhHHHHHHHHHHHHHHHHhccchhheeeeeEeeeHHHHHHHHHcCCCCCHHHHHHHHHHHHHHhheeccccccccc
Confidence 5677778888999999999999999999999999999999999999999999999999999999988776544433
No 29
>TIGR00688 rarD rarD protein. This uncharacterized protein is predicted to have many membrane-spanning domains.
Probab=99.58 E-value=1.6e-12 Score=119.78 Aligned_cols=232 Identities=6% Similarity=0.003 Sum_probs=151.8
Q ss_pred HHHHHHHHHhhhhhccCCCCchhHHHHHHHHHHHHHH--HH--hcccC----CCCCCchH----HHHHHHHHHHhhHHHH
Q 018484 33 FGYLVNGICEEYVYNRLQFSYGWYFTFVQGFVYLVLI--YL--QGFTT----KQMVNPWK----TYVKLSAVLMGSHGLT 100 (355)
Q Consensus 33 ~~~~~~~~~~k~i~~~~~f~~p~~lt~~Q~~~~~~~~--~~--~~~~~----~~~~~~~~----~~~~~s~~~~~~~~l~ 100 (355)
+.+...+...|.+ . +. .|..+++..++++.++. +. .+.++ +.++.+.+ .....+++......+.
T Consensus 12 ~~wg~~~~~~k~~-~--~~-~~~~i~~~R~~~a~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~ 87 (256)
T TIGR00688 12 FLFGYMYYYSKLL-K--PL-PATDILGHRMIWSFPFMLLSVTLFRQWAALIERLKRIQKRPLILSLLLCGLLIGFNWWLF 87 (256)
T ss_pred HHHHHHHHHHHHh-c--cC-CHHHHHHHHHHHHHHHHHHHHHHHcchHHHHHHHhCcccchHHHHHHHHHHHHHHHHHHH
Confidence 3445566677764 2 23 47888999988764332 22 21110 00111111 1333556667788899
Q ss_pred HHHhhCCChhHHHHHhhcchHHHHHHHhhhcCCccccChhHHHHHHHHHHHHHHHhccCCCCCCCchhhHHHHHHHHHHH
Q 018484 101 KGSLAFLNYPAQIMFKSTKVLPVMIMGAFIPGLRRKYPAHEYVAALLLVFGLILFTMADAQTSPNFSLIGVLMISGALVM 180 (355)
Q Consensus 101 ~~sL~~~s~~~~~v~ks~~pi~v~l~~~l~~gl~~~~s~~~~~~l~li~~Gv~l~~~~~~~~~~~~~~~G~~l~l~s~~~ 180 (355)
++|+++++.+..+++-++.|++++++++++ +|||+++++++++++.++|+++...++. +.. .+++.+.++
T Consensus 88 ~~a~~~~~~~~a~~l~~~~Pi~~~lla~~~--l~Ek~~~~~~l~~~~~~~Gv~li~~~~~----~~~----~~~l~aa~~ 157 (256)
T TIGR00688 88 IWAVNNGSSLEVSLGYLINPLVMVALGRVF--LKERISRFQFIAVIIATLGVISNIVLKG----SLP----WEALVLAFS 157 (256)
T ss_pred HHHHHcchHHHHHHHHHHHHHHHHHHHHHH--HhcCCCHHHHHHHHHHHHHHHHHHHHcC----Cch----HHHHHHHHH
Confidence 999999999999999999999999999999 8999999999999999999998754321 111 346778889
Q ss_pred HHhHHHHHHHHHhhCCCCChhhHHHHHHHHhHHHHHHHHHhhchHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHHHH
Q 018484 181 DSFLGNLQEVIFTVNPDTTQMEMLFCSTVVGLPFLLVPMILTGELVRAWNSCSQHLYVYGVLVFEAMATFVGQVSVLSLI 260 (355)
Q Consensus 181 ~a~~~v~~~~l~~~~~~~~~~~l~~~~~l~~~~~ll~~~~~~ge~~~~~~~~~~~~~~~~~l~l~~~~~~l~~~~~~~~i 260 (355)
.|.+.+..|+..++ +..+...+ .+...|+..+.....+.. .. .. ......|..++..++.+.+++.+++..+
T Consensus 158 ~a~~~i~~~~~~~~----~~~~~~~~-~~~~~~~~~~~~~~~~~~-~~-~~-~~~~~~~~~l~~~g~~t~i~~~l~~~a~ 229 (256)
T TIGR00688 158 FTAYGLIRKALKNT----DLAGFCLE-TLSLMPVAIYYLLQTDFA-TV-QQ-TNPFPIWLLLVLAGLITGTPLLAFVIAA 229 (256)
T ss_pred HHHHHHHHhhcCCC----CcchHHHH-HHHHHHHHHHHHHHhccC-cc-cc-cCchhHHHHHHHHHHHHHHHHHHHHHHH
Confidence 99998888775432 12222222 222333332221111110 00 00 0011134444445566789999999999
Q ss_pred HhhchHHHHHHHhHHHHHHHHHHHHH
Q 018484 261 ALFGAATTAMITTARKAVTLFLSYLI 286 (355)
Q Consensus 261 ~~~sa~t~svv~~~k~v~~i~ls~l~ 286 (355)
++.+|...++..+++|+++.+++++.
T Consensus 230 ~~~~a~~~s~~~yl~Pv~~~~~~~~~ 255 (256)
T TIGR00688 230 NRLPLNLLGLLQYIGPTIMMLCVSFL 255 (256)
T ss_pred HcCChHHHHHHHHHHHHHHHHHHHHh
Confidence 99999999999999999999999764
No 30
>KOG2766 consensus Predicted membrane protein [Function unknown]
Probab=99.56 E-value=1.7e-16 Score=140.47 Aligned_cols=291 Identities=13% Similarity=0.169 Sum_probs=198.4
Q ss_pred HHhhhhhccCCCCchhHHHHHHHHHHHHHHHH----hcccCCCCCCchHHHHHHHHHHHhhHHHHHHHhhCCChhHHHHH
Q 018484 40 ICEEYVYNRLQFSYGWYFTFVQGFVYLVLIYL----QGFTTKQMVNPWKTYVKLSAVLMGSHGLTKGSLAFLNYPAQIMF 115 (355)
Q Consensus 40 ~~~k~i~~~~~f~~p~~lt~~Q~~~~~~~~~~----~~~~~~~~~~~~~~~~~~s~~~~~~~~l~~~sL~~~s~~~~~v~ 115 (355)
+.+.++- +.+.+.|..=+|.. ++++..+ ..+|++..+..|+.|+.+++.-.-+.++-..|.||++....+++
T Consensus 35 ~tss~la-~k~iN~Pt~QtFl~---Y~LLalVY~~~~~fR~~~~~~~~~hYilla~~DVEaNy~vV~AyQyTsmtSi~lL 110 (336)
T KOG2766|consen 35 FTSSELA-RKGINAPTSQTFLN---YVLLALVYGPIMLFRRKYIKAKWRHYILLAFVDVEANYFVVKAYQYTSMTSIMLL 110 (336)
T ss_pred hhhHHHH-hccCCCccHHHHHH---HHHHHHHHhhHHHhhhHHHHHHHHHhhheeEEeecccEEEeeehhhcchHHHHHH
Confidence 4455553 33456775444433 3332221 23443344567888988888877676677899999999999999
Q ss_pred hhcchHHHHHHHhhhcCCccccChhHHHHHHHHHHHHHHHhccCCCC----CCCchhhHHHHHHHHHHHHHhHHHHHHHH
Q 018484 116 KSTKVLPVMIMGAFIPGLRRKYPAHEYVAALLLVFGLILFTMADAQT----SPNFSLIGVLMISGALVMDSFLGNLQEVI 191 (355)
Q Consensus 116 ks~~pi~v~l~~~l~~gl~~~~s~~~~~~l~li~~Gv~l~~~~~~~~----~~~~~~~G~~l~l~s~~~~a~~~v~~~~l 191 (355)
-+...+.+++++|++ ++.|+.+.++.++++...|+++..++|... +.++...|..++++++.++|..++.+|.+
T Consensus 111 Dcwaip~v~~lsw~f--LktrYrlmki~gV~iCi~GvvmvV~sDV~agd~aggsnp~~GD~lvi~GATlYaVSNv~EEfl 188 (336)
T KOG2766|consen 111 DCWAIPCVLVLSWFF--LKTRYRLMKISGVVICIVGVVMVVFSDVHAGDRAGGSNPVKGDFLVIAGATLYAVSNVSEEFL 188 (336)
T ss_pred HHhhhHHHHHHHHHH--HHHHHhhheeeeEEeEecceEEEEEeeeccccccCCCCCccCcEEEEecceeeeeccccHHHH
Confidence 999999999999999 999999999999999999999988877421 13456899999999999999999999888
Q ss_pred HhhCCCCChhhHHHHHHHHhHHHHHHHHHhhchHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHHHHHhhchHHHHHH
Q 018484 192 FTVNPDTTQMEMLFCSTVVGLPFLLVPMILTGELVRAWNSCSQHLYVYGVLVFEAMATFVGQVSVLSLIALFGAATTAMI 271 (355)
Q Consensus 192 ~~~~~~~~~~~l~~~~~l~~~~~ll~~~~~~ge~~~~~~~~~~~~~~~~~l~l~~~~~~l~~~~~~~~i~~~sa~t~svv 271 (355)
.++ .+..+++-...+++..+..+=.+.+. .+.....| +.....++. ..++-++-+-+.-.+++..||+..++-
T Consensus 189 vkn---~d~~elm~~lgLfGaIIsaIQ~i~~~--~~~~tl~w-~~~i~~yl~-f~L~MFllYsl~pil~k~~~aT~~nls 261 (336)
T KOG2766|consen 189 VKN---ADRVELMGFLGLFGAIISAIQFIFER--HHVSTLHW-DSAIFLYLR-FALTMFLLYSLAPILIKTNSATMFNLS 261 (336)
T ss_pred Hhc---CcHHHHHHHHHHHHHHHHHHHHhhhc--cceeeEee-hHHHHHHHH-HHHHHHHHHHhhHHheecCCceEEEhh
Confidence 775 35677777777777666543322211 11100001 111112222 233434444455677899999999999
Q ss_pred HhHHHHHHHHHHHHHhCCCcccchhhhHHHHHHHHHHHhccCCCCCCCCCCCCcCCCCCCCCChhhhhccccCCcchhcc
Q 018484 272 TTARKAVTLFLSYLIFTKPLTEQHGTGLLLIAMGIILKMLPENKAPANNRPNSHNNVKRRKSPEPEEKSLVETNGEVEEK 351 (355)
Q Consensus 272 ~~~k~v~~i~ls~l~f~~~~t~~~~iG~~lv~~Gv~ly~~~k~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 351 (355)
....+..++++ ..||-+++|...+..+.+..|.++|+ .|+|.+ ..++.++.-|..+..+++..||+|.|-+
T Consensus 262 lLTsDmwsl~i--~~FgYhv~wLY~laF~~i~~GliiYs---~re~~~----~e~r~~~v~~~~~~~~~L~~eed~~~~~ 332 (336)
T KOG2766|consen 262 LLTSDMWSLLI--RTFGYHVDWLYFLAFATIATGLIIYS---TREKDE----EELRKGQVVSEVRRPRKLLDEEDEQSLH 332 (336)
T ss_pred HhHHHHHHHHH--HHHhcchhhhhHHHHHHHHHhhEEee---ccccCc----HhhccCccccccccCccccCcccccccc
Confidence 99999999988 77888899999999999999999993 333322 2233344444445555666555555544
Q ss_pred C
Q 018484 352 Q 352 (355)
Q Consensus 352 ~ 352 (355)
.
T Consensus 333 ~ 333 (336)
T KOG2766|consen 333 S 333 (336)
T ss_pred c
Confidence 3
No 31
>TIGR00776 RhaT RhaT L-rhamnose-proton symporter family protein. These proteins are members of the L-Rhamnose Symporter (RhaT) Family (TC 2.A.7). This family includes two characterized members, both of which function as L-rhamnose:H+ symporters and have 10 GES predicted transmembrane domains.
Probab=99.52 E-value=1.7e-11 Score=115.12 Aligned_cols=206 Identities=11% Similarity=0.122 Sum_probs=151.4
Q ss_pred HHHHhhHHHHHHHhhCCChhHHHHHhh-cchHHHHHHHhhhcCCccccChhH----HHHHHHHHHHHHHHhccCCCCCC-
Q 018484 91 AVLMGSHGLTKGSLAFLNYPAQIMFKS-TKVLPVMIMGAFIPGLRRKYPAHE----YVAALLLVFGLILFTMADAQTSP- 164 (355)
Q Consensus 91 ~~~~~~~~l~~~sL~~~s~~~~~v~ks-~~pi~v~l~~~l~~gl~~~~s~~~----~~~l~li~~Gv~l~~~~~~~~~~- 164 (355)
+....+..+.+.|.++++++....+-+ ..++++.+.+.++ +||+.++++ +++++++++|+++....+.+...
T Consensus 67 ~~w~ig~~~~~~ai~~~gva~a~~i~~~~~~v~~~l~~~~~--f~e~~t~~~~~~~~~g~~l~l~G~~l~~~~~~~~~~~ 144 (290)
T TIGR00776 67 AFWALGQINQFKSMRYMGVSKTMPISTGFQLVGGTLFGVIV--FGEWSTSIQTLLGLLALILIIIGVYLTSRSKDKSAGI 144 (290)
T ss_pred HHHHhhhhhHHHHHHHHhHHHHhHHHHHHHHHHHHHHHHHH--hhhccchHHHHHHHHHHHHHHHhHheEEecccccccc
Confidence 445566788999999999999977777 7788889999999 899999999 99999999999988765433211
Q ss_pred ---CchhhHHHHHHHHHHHHHhHHHHHHHHHhhCCCCChhhHHHHH---HHHhHHHHHHHHHhhchHHHHHHHHhhhhHH
Q 018484 165 ---NFSLIGVLMISGALVMDSFLGNLQEVIFTVNPDTTQMEMLFCS---TVVGLPFLLVPMILTGELVRAWNSCSQHLYV 238 (355)
Q Consensus 165 ---~~~~~G~~l~l~s~~~~a~~~v~~~~l~~~~~~~~~~~l~~~~---~l~~~~~ll~~~~~~ge~~~~~~~~~~~~~~ 238 (355)
.....|+++.++|.++.+.+.+.-|+. + + ++....+.. .+++.....+.. . +. +. ......
T Consensus 145 ~~~~~~~~Gi~~~l~sg~~y~~~~~~~~~~-~-~---~~~~~~~~~~~g~~~~~~~~~~~~-~--~~-~~----~~~~~~ 211 (290)
T TIGR00776 145 KSEFNFKKGILLLLMSTIGYLVYVVVAKAF-G-V---DGLSVLLPQAIGMVIGGIIFNLGH-I--LA-KP----LKKYAI 211 (290)
T ss_pred ccccchhhHHHHHHHHHHHHHHHHHHHHHc-C-C---CcceehhHHHHHHHHHHHHHHHHH-h--cc-cc----hHHHHH
Confidence 222689999999999999988887653 2 2 344443222 222222211110 0 00 00 011122
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHH-hhchHHHHHHHhHHHHHHHHHHHHHhCCCcccchh----hhHHHHHHHHHHHhcc
Q 018484 239 YGVLVFEAMATFVGQVSVLSLIA-LFGAATTAMITTARKAVTLFLSYLIFTKPLTEQHG----TGLLLIAMGIILKMLP 312 (355)
Q Consensus 239 ~~~l~l~~~~~~l~~~~~~~~i~-~~sa~t~svv~~~k~v~~i~ls~l~f~~~~t~~~~----iG~~lv~~Gv~ly~~~ 312 (355)
+..++ .++...+++.+++...+ +.++.+.++..++.++++.++|++++||+.++.|+ +|.++++.|+.+-...
T Consensus 212 ~~~~~-~Gi~~~ia~~~y~~~~~~~~~~~~~~~ls~~~pvia~~~~v~~l~E~~~~~~~~~~~iG~~lIi~~~~l~~~~ 289 (290)
T TIGR00776 212 LLNIL-PGLMWGIGNFFYLFSAQPKVGVATSFSLSQLGVIISTLGGILILGEKKTKREMIAISVGIILIIIAANILGIG 289 (290)
T ss_pred HHHHH-HHHHHHHHHHHHHHHcccccchhhHHHHHHHHHHHHHHHHHHHhccCCCcceeehhHHHHHHHHHHHHHHhcc
Confidence 32333 45567788888888888 99999999999999999999999999999999999 9999999999886654
No 32
>KOG4510 consensus Permease of the drug/metabolite transporter (DMT) superfamily [General function prediction only]
Probab=99.42 E-value=2.1e-14 Score=128.08 Aligned_cols=216 Identities=12% Similarity=0.136 Sum_probs=160.1
Q ss_pred HHHHHHhhHHHHHHHhhCCChhHHHHHhhcchHHHHHHHhhhcCCccccChhHHHHHHHHHHHHHHHhccC-----CCCC
Q 018484 89 LSAVLMGSHGLTKGSLAFLNYPAQIMFKSTKVLPVMIMGAFIPGLRRKYPAHEYVAALLLVFGLILFTMAD-----AQTS 163 (355)
Q Consensus 89 ~s~~~~~~~~l~~~sL~~~s~~~~~v~ks~~pi~v~l~~~l~~gl~~~~s~~~~~~l~li~~Gv~l~~~~~-----~~~~ 163 (355)
.++....+..+.++|++|+|.+-++++..++|++|.++++++ +||+++..+.++..+.+.||+++.... ...+
T Consensus 103 Rg~mG~tgvmlmyya~~~mslaDA~vItFssPvft~ifaw~~--LkE~~t~~eaL~s~itl~GVVLIvRPpFlFG~~t~g 180 (346)
T KOG4510|consen 103 RGFMGFTGVMLMYYALMYMSLADAVVITFSSPVFTIIFAWAF--LKEPFTKFEALGSLITLLGVVLIVRPPFLFGDTTEG 180 (346)
T ss_pred ehhhhhhHHHHHHHHHhhcchhheEEEEecChHHHHHHHHHH--HcCCCcHHHHHHHHHhhheEEEEecCCcccCCCccc
Confidence 466666677789999999999999999999999999999999 999999999999999999999875532 1111
Q ss_pred -----CCchhhHHHHHHHHHHHHHhHHHHHHHHHhhCCCCChhhHHHHHHHHhHHHHHHHHHhhchHHHHHHHHhhhhHH
Q 018484 164 -----PNFSLIGVLMISGALVMDSFLGNLQEVIFTVNPDTTQMEMLFCSTVVGLPFLLVPMILTGELVRAWNSCSQHLYV 238 (355)
Q Consensus 164 -----~~~~~~G~~l~l~s~~~~a~~~v~~~~l~~~~~~~~~~~l~~~~~l~~~~~ll~~~~~~ge~~~~~~~~~~~~~~ 238 (355)
.+.+..|....+.+.+..|-..++.+++-++- +..-.+.|..+++++..++.+..-|+. .. .+....
T Consensus 181 ~~~s~~~~~~~gt~aai~s~lf~asvyIilR~iGk~~---h~~msvsyf~~i~lV~s~I~~~~ig~~----~l-P~cgkd 252 (346)
T KOG4510|consen 181 EDSSQVEYDIPGTVAAISSVLFGASVYIILRYIGKNA---HAIMSVSYFSLITLVVSLIGCASIGAV----QL-PHCGKD 252 (346)
T ss_pred cccccccccCCchHHHHHhHhhhhhHHHHHHHhhccc---cEEEEehHHHHHHHHHHHHHHhhccce----ec-Cccccc
Confidence 12356787777778777776666665554432 222233444566666655544333421 10 011112
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHhhchHHHHHHHhHHHHHHHHHHHHHhCCCcccchhhhHHHHHHHHHHHhccCC
Q 018484 239 YGVLVFEAMATFVGQVSVLSLIALFGAATTAMITTARKAVTLFLSYLIFTKPLTEQHGTGLLLIAMGIILKMLPEN 314 (355)
Q Consensus 239 ~~~l~l~~~~~~l~~~~~~~~i~~~sa~t~svv~~~k~v~~i~ls~l~f~~~~t~~~~iG~~lv~~Gv~ly~~~k~ 314 (355)
+..++..++.++++|++....+++=-|--.++..+..-+++.++.+++|+|.+|++.|.|+++++...++-...|-
T Consensus 253 r~l~~~lGvfgfigQIllTm~lQiErAGpvaim~~~dvvfAf~wqv~ff~~~Pt~ws~~Ga~~vvsS~v~~a~~kw 328 (346)
T KOG4510|consen 253 RWLFVNLGVFGFIGQILLTMGLQIERAGPVAIMTYTDVVFAFFWQVLFFGHWPTIWSWVGAVMVVSSTVWVALKKW 328 (346)
T ss_pred eEEEEEehhhhhHHHHHHHHHhhhhccCCeehhhHHHHHHHHHHHHHHhcCCChHHHhhceeeeehhHHHHHHHHH
Confidence 3333334788899999999888888888888999999999999999999999999999999999998887765443
No 33
>COG2962 RarD Predicted permeases [General function prediction only]
Probab=99.35 E-value=1.1e-09 Score=99.93 Aligned_cols=211 Identities=13% Similarity=0.139 Sum_probs=152.1
Q ss_pred HHHHHHhhHHHHHHHhhCCChhHHHHHhhcchHHHHHHHhhhcCCccccChhHHHHHHHHHHHHHHHhccCCCCCCCchh
Q 018484 89 LSAVLMGSHGLTKGSLAFLNYPAQIMFKSTKVLPVMIMGAFIPGLRRKYPAHEYVAALLLVFGLILFTMADAQTSPNFSL 168 (355)
Q Consensus 89 ~s~~~~~~~~l~~~sL~~~s~~~~~v~ks~~pi~v~l~~~l~~gl~~~~s~~~~~~l~li~~Gv~l~~~~~~~~~~~~~~ 168 (355)
.++.-..+.+...+|...-..--..+.-...|++.+++|.++ +|||.++.|++++++..+||..-....+ +..+
T Consensus 78 ~a~li~~nW~lfiWAvn~g~~leaSLGY~InPL~~VllG~lf--lkErls~~Q~iAV~lA~~GV~~~~~~~g----~lpw 151 (293)
T COG2962 78 TALLIGLNWWLFIWAVNNGHVLEASLGYFINPLVNVLLGRLF--LKERLSRLQWIAVGLAAAGVLIQTWLLG----SLPW 151 (293)
T ss_pred HHHHHHHHHHHhheecCCCchhHHHhHHHHHHHHHHHHHHHH--HHhhccHHHHHHHHHHHHHHHHHHHHcC----CCcH
Confidence 344445556666666666556666777778899999999999 9999999999999999999998876542 4566
Q ss_pred hHHHHHHHHHHHHHhHHHHHHHHHhhCCCCChhhHHHHHHHHhHHHHHHHHHhhchHHHHHHHHh-hhhHHHHHHHHHHH
Q 018484 169 IGVLMISGALVMDSFLGNLQEVIFTVNPDTTQMEMLFCSTVVGLPFLLVPMILTGELVRAWNSCS-QHLYVYGVLVFEAM 247 (355)
Q Consensus 169 ~G~~l~l~s~~~~a~~~v~~~~l~~~~~~~~~~~l~~~~~l~~~~~ll~~~~~~ge~~~~~~~~~-~~~~~~~~l~l~~~ 247 (355)
..+.+++ ..++|....|++ + .+..+-+..-.++-+|..+...+..++-.+ +.. +++..+..+..++.
T Consensus 152 val~la~----sf~~Ygl~RK~~-~----v~a~~g~~lE~l~l~p~al~yl~~l~~~~~---~~~~~~~~~~~LLv~aG~ 219 (293)
T COG2962 152 VALALAL----SFGLYGLLRKKL-K----VDALTGLTLETLLLLPVALIYLLFLADSGQ---FLQQNANSLWLLLVLAGL 219 (293)
T ss_pred HHHHHHH----HHHHHHHHHHhc-C----CchHHhHHHHHHHHhHHHHHHHHHHhcCch---hhhcCCchHHHHHHHhhH
Confidence 6665543 456666554432 2 223333333334444444444433333222 222 33445666777778
Q ss_pred HHHHHHHHHHHHHHhhchHHHHHHHhHHHHHHHHHHHHHhCCCcccchhhhHHHHHHHHHHHhccCCCCC
Q 018484 248 ATFVGQVSVLSLIALFGAATTAMITTARKAVTLFLSYLIFTKPLTEQHGTGLLLIAMGIILKMLPENKAP 317 (355)
Q Consensus 248 ~~~l~~~~~~~~i~~~sa~t~svv~~~k~v~~i~ls~l~f~~~~t~~~~iG~~lv~~Gv~ly~~~k~~~~ 317 (355)
.+.+.-.+....-++.+=.+.++...+.|....+++++++||+++..+....+++-.|+.+|+...-+++
T Consensus 220 vTavpL~lf~~aa~~lpls~~G~lqYi~Ptl~fllav~i~~E~~~~~~~~~F~~IW~aL~l~~~d~l~~~ 289 (293)
T COG2962 220 VTAVPLLLFAAAAKRLPLSTLGFLQYIEPTLMFLLAVLIFGEPFDSDQLVTFAFIWLALALFSIDGLYTA 289 (293)
T ss_pred HHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 8878888888889999999999999999999999999999999999999999999999999998765433
No 34
>COG5006 rhtA Threonine/homoserine efflux transporter [Amino acid transport and metabolism]
Probab=99.32 E-value=3.7e-09 Score=94.29 Aligned_cols=259 Identities=12% Similarity=0.047 Sum_probs=171.5
Q ss_pred HHHHhhhhhccCCCCchhHHHHHHHHHHHH-HHH-HhcccCCCCCCchHHHHHHHHHHHhhHHHHHHHhhCCChhHHHHH
Q 018484 38 NGICEEYVYNRLQFSYGWYFTFVQGFVYLV-LIY-LQGFTTKQMVNPWKTYVKLSAVLMGSHGLTKGSLAFLNYPAQIMF 115 (355)
Q Consensus 38 ~~~~~k~i~~~~~f~~p~~lt~~Q~~~~~~-~~~-~~~~~~~~~~~~~~~~~~~s~~~~~~~~l~~~sL~~~s~~~~~v~ 115 (355)
...+-|.++-.. . +.-.|........+ ++. .+-++.+..+.+++.....+++..+++.+-+.|++.+|.++...+
T Consensus 27 Gas~Ak~LFP~v--G-~~g~t~lRl~~aaLIll~l~RPwr~r~~~~~~~~~~~yGvsLg~MNl~FY~si~riPlGiAVAi 103 (292)
T COG5006 27 GASFAKSLFPLV--G-AAGVTALRLAIAALILLALFRPWRRRLSKPQRLALLAYGVSLGGMNLLFYLSIERIPLGIAVAI 103 (292)
T ss_pred hHHHHHHHcccc--C-hhhHHHHHHHHHHHHHHHHhhHHHhccChhhhHHHHHHHHHHHHHHHHHHHHHHhccchhhhhh
Confidence 344556554221 1 34455555444322 222 222222223345555667788888888899999999999999999
Q ss_pred hhcchHHHHHHHhhhcCCccccChhHHHHHHHHHHHHHHHhccCCCCCCCchhhHHHHHHHHHHHHHhHHHHHHHHHhhC
Q 018484 116 KSTKVLPVMIMGAFIPGLRRKYPAHEYVAALLLVFGLILFTMADAQTSPNFSLIGVLMISGALVMDSFLGNLQEVIFTVN 195 (355)
Q Consensus 116 ks~~pi~v~l~~~l~~gl~~~~s~~~~~~l~li~~Gv~l~~~~~~~~~~~~~~~G~~l~l~s~~~~a~~~v~~~~l~~~~ 195 (355)
-.+.|+.+.+++ -|| .++...+.+.+.|+.+..-... +..+.+..|..+.+.+..|++.|-+.-+|.-+..
T Consensus 104 EF~GPL~vA~~~------sRr--~~d~vwvaLAvlGi~lL~p~~~-~~~~lDp~Gv~~Al~AG~~Wa~YIv~G~r~g~~~ 174 (292)
T COG5006 104 EFTGPLAVALLS------SRR--LRDFVWVALAVLGIWLLLPLGQ-SVWSLDPVGVALALGAGACWALYIVLGQRAGRAE 174 (292)
T ss_pred hhccHHHHHHHh------ccc--hhhHHHHHHHHHHHHhheeccC-CcCcCCHHHHHHHHHHhHHHHHHHHHcchhcccC
Confidence 999999877654 233 3455666778888877654332 2224578999999999999999988888776432
Q ss_pred CCCChhhHHHHHHHHhHHHHHHHHHhhchHHHHHHHHhhhhHHH-HHHHHHHHHHHHHHHHHHHHHHhhchHHHHHHHhH
Q 018484 196 PDTTQMEMLFCSTVVGLPFLLVPMILTGELVRAWNSCSQHLYVY-GVLVFEAMATFVGQVSVLSLIALFGAATTAMITTA 274 (355)
Q Consensus 196 ~~~~~~~l~~~~~l~~~~~ll~~~~~~ge~~~~~~~~~~~~~~~-~~l~l~~~~~~l~~~~~~~~i~~~sa~t~svv~~~ 274 (355)
+ .. .-+-.-..++..+.+|.-+.... +. ..+|... .-+....+++.+-+.+....+++.++-+.++...+
T Consensus 175 ~--g~-~g~a~gm~vAaviv~Pig~~~ag-~~-----l~~p~ll~laLgvavlSSalPYsLEmiAL~rlp~~~F~~LlSL 245 (292)
T COG5006 175 H--GT-AGVAVGMLVAALIVLPIGAAQAG-PA-----LFSPSLLPLALGVAVLSSALPYSLEMIALRRLPARTFGTLLSL 245 (292)
T ss_pred C--Cc-hHHHHHHHHHHHHHhhhhhhhcc-hh-----hcChHHHHHHHHHHHHhcccchHHHHHHHhhCChhHHHHHHHh
Confidence 1 11 12222234444444443221111 11 1123322 23444445666777788899999999999999999
Q ss_pred HHHHHHHHHHHHhCCCcccchhhhHHHHHHHHHHHhccCCCCC
Q 018484 275 RKAVTLFLSYLIFTKPLTEQHGTGLLLIAMGIILKMLPENKAP 317 (355)
Q Consensus 275 k~v~~i~ls~l~f~~~~t~~~~iG~~lv~~Gv~ly~~~k~~~~ 317 (355)
+|.+.-+.|++++||.+|+.||.|++.++.+..-.++..+|+.
T Consensus 246 ePa~aAl~G~i~L~e~ls~~qwlaI~~ViaAsaG~~lt~~~~~ 288 (292)
T COG5006 246 EPALAALSGLIFLGETLTLIQWLAIAAVIAASAGSTLTARKPA 288 (292)
T ss_pred hHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHhccccccCCCC
Confidence 9999999999999999999999999999999987666555544
No 35
>PF00892 EamA: EamA-like transporter family; InterPro: IPR000620 This domain is found in proteins including the Erwinia chrysanthemi PecM protein, which is involved in pectinase, cellulase and blue pigment regulation; and the Salmonella typhimurium PagO protein, the function of which is unknown. Many members of this family are classed as drug/metabolite transporters and have no known function. They are predicted to be integral membrane proteins and many of the proteins contain two copies of this domain [].; GO: 0016020 membrane
Probab=98.81 E-value=3.7e-08 Score=79.66 Aligned_cols=123 Identities=11% Similarity=0.183 Sum_probs=90.4
Q ss_pred HHHhHHHHHHHHHhhCCCCChhhHHHHHHHHhHHHHHHHHHhhchHHHHHHHHhhhhH-HHHHHHHHHHHHHHHHHHHHH
Q 018484 180 MDSFLGNLQEVIFTVNPDTTQMEMLFCSTVVGLPFLLVPMILTGELVRAWNSCSQHLY-VYGVLVFEAMATFVGQVSVLS 258 (355)
Q Consensus 180 ~~a~~~v~~~~l~~~~~~~~~~~l~~~~~l~~~~~ll~~~~~~ge~~~~~~~~~~~~~-~~~~l~l~~~~~~l~~~~~~~ 258 (355)
++|...+..|+..++ .++....++....+.+ +++.....+... ....++. ....+..+.+++.+++.+++.
T Consensus 2 ~~a~~~~~~k~~~~~---~~~~~~~~~~~~~~~~-~~~~~~~~~~~~----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 73 (126)
T PF00892_consen 2 SWAIYSVFSKKLLKK---ISPLSITFWRFLIAGI-LLILLLILGRKP----FKNLSPRQWLWLLFLGLLGTALAYLLYFY 73 (126)
T ss_pred eeeeHHHHHHHHhcc---CCHHHHHHHHHHHHHH-HHHHHHhhcccc----ccCCChhhhhhhhHhhccceehHHHHHHH
Confidence 456677788777765 3577888888777775 433333322211 0111122 223344444556788999999
Q ss_pred HHHhhchHHHHHHHhHHHHHHHHHHHHHhCCCcccchhhhHHHHHHHHHHHh
Q 018484 259 LIALFGAATTAMITTARKAVTLFLSYLIFTKPLTEQHGTGLLLIAMGIILKM 310 (355)
Q Consensus 259 ~i~~~sa~t~svv~~~k~v~~i~ls~l~f~~~~t~~~~iG~~lv~~Gv~ly~ 310 (355)
.+++.++...++...+.|+++.++++++++|++++.+++|+.+++.|+.+..
T Consensus 74 a~~~~~~~~~~~~~~~~pv~~~i~~~~~~~e~~~~~~~~g~~l~~~g~~l~~ 125 (126)
T PF00892_consen 74 ALKYISASIVSILQYLSPVFAAILGWLFLGERPSWRQIIGIILIIIGVVLIS 125 (126)
T ss_pred HHHhcchhHHHHHHHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHHHHHH
Confidence 9999999999999999999999999999999999999999999999998754
No 36
>PRK15430 putative chloramphenical resistance permease RarD; Provisional
Probab=98.67 E-value=1.8e-06 Score=81.44 Aligned_cols=139 Identities=12% Similarity=0.074 Sum_probs=104.7
Q ss_pred hhhHHHHHHHHHHHHHhHHHHHHHHHhhCCCCChhhHHHHHHHHhHHHHHHHHHhhchHHHHHHHHhhhhHHHHHHHHHH
Q 018484 167 SLIGVLMISGALVMDSFLGNLQEVIFTVNPDTTQMEMLFCSTVVGLPFLLVPMILTGELVRAWNSCSQHLYVYGVLVFEA 246 (355)
Q Consensus 167 ~~~G~~l~l~s~~~~a~~~v~~~~l~~~~~~~~~~~l~~~~~l~~~~~ll~~~~~~ge~~~~~~~~~~~~~~~~~l~l~~ 246 (355)
...|.++++++.++++...++.|. .. ..++.++.++-..++.+++++.....++....... .+++..+......+
T Consensus 6 ~~~g~~~~l~a~~~wg~~~~~~k~-~~---~~~~~~~~~~R~~~a~~~l~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~ 80 (296)
T PRK15430 6 TRQGVLLALAAYFIWGIAPAYFKL-IY---YVPADEILTHRVIWSFFFMVVLMSICRQWSYLKTL-IQTPQKIFMLAVSA 80 (296)
T ss_pred hhhHHHHHHHHHHHHHHHHHHHHH-hc---CCCHHHHHHHHHHHHHHHHHHHHHHHccHHHHHHH-HcCHHHHHHHHHHH
Confidence 568999999999999999888854 33 24688899998888877665544333332221111 11222222333445
Q ss_pred HHHHHHHHHHHHHHHhhchHHHHHHHhHHHHHHHHHHHHHhCCCcccchhhhHHHHHHHHHHHh
Q 018484 247 MATFVGQVSVLSLIALFGAATTAMITTARKAVTLFLSYLIFTKPLTEQHGTGLLLIAMGIILKM 310 (355)
Q Consensus 247 ~~~~l~~~~~~~~i~~~sa~t~svv~~~k~v~~i~ls~l~f~~~~t~~~~iG~~lv~~Gv~ly~ 310 (355)
+.....+.+.++.+++.++...+++....|+++.++++++++|+++..+|+|+++.+.|+.+-.
T Consensus 81 ~~~~~~~~~~~~a~~~~~~~~a~~l~~~~Pi~v~l~~~~~l~E~~~~~~~~g~~l~~~Gv~li~ 144 (296)
T PRK15430 81 VLIGGNWLLFIWAVNNHHMLEASLGYFINPLVNIVLGMIFLGERFRRMQWLAVILAICGVLVQL 144 (296)
T ss_pred HHHHHHHHHHHHHHhcCchHHHHHHHHHHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHHHHHH
Confidence 5556678899999999999999999999999999999999999999999999999999998754
No 37
>COG2510 Predicted membrane protein [Function unknown]
Probab=98.66 E-value=6.3e-08 Score=77.72 Aligned_cols=134 Identities=16% Similarity=0.152 Sum_probs=98.8
Q ss_pred HHHHHHHHHHHHhHHHHHHHHHhhCCCCChhhHHHHHHHHhHHHHHHHHHhhchHHHHHHHHhhhhHHHHHHHHHHHHHH
Q 018484 171 VLMISGALVMDSFLGNLQEVIFTVNPDTTQMEMLFCSTVVGLPFLLVPMILTGELVRAWNSCSQHLYVYGVLVFEAMATF 250 (355)
Q Consensus 171 ~~l~l~s~~~~a~~~v~~~~l~~~~~~~~~~~l~~~~~l~~~~~ll~~~~~~ge~~~~~~~~~~~~~~~~~l~l~~~~~~ 250 (355)
.+++++|+++.++..++.|.-++.- |+.-..+--++....++...++..|.....- .-++..|.++.++++.+.
T Consensus 5 ~~~ALLsA~fa~L~~iF~KIGl~~v---dp~~At~IRtiVi~~~l~~v~~~~g~~~~~~---~~~~k~~lflilSGla~g 78 (140)
T COG2510 5 IIYALLSALFAGLTPIFAKIGLEGV---DPDFATTIRTIVILIFLLIVLLVTGNWQAGG---EIGPKSWLFLILSGLAGG 78 (140)
T ss_pred HHHHHHHHHHHHHHHHHHHHhcccc---CccHHHHHHHHHHHHHHHHHHHhcCceeccc---ccCcceehhhhHHHHHHH
Confidence 4677888899999888775544422 2322233333444444444445555432110 113456778888999999
Q ss_pred HHHHHHHHHHHhhchHHHHHHHhHHHHHHHHHHHHHhCCCcccchhhhHHHHHHHHHHHh
Q 018484 251 VGQVSVLSLIALFGAATTAMITTARKAVTLFLSYLIFTKPLTEQHGTGLLLIAMGIILKM 310 (355)
Q Consensus 251 l~~~~~~~~i~~~sa~t~svv~~~k~v~~i~ls~l~f~~~~t~~~~iG~~lv~~Gv~ly~ 310 (355)
.+-+++|..++.-.+.....+.-..+++++++|++++||.+|..+|+|++++.+|.++-+
T Consensus 79 lswl~Yf~ALk~G~as~VvPldk~svvl~~lls~lfL~E~ls~~~~iG~~LI~~Gailvs 138 (140)
T COG2510 79 LSWLLYFRALKKGKASRVVPLDKTSVVLAVLLSILFLGERLSLPTWIGIVLIVIGAILVS 138 (140)
T ss_pred HHHHHHHHHHhcCCcceEEEcccccHHHHHHHHHHHhcCCCCHHHHHHHHHHHhCeeeEe
Confidence 999999999999999999999999999999999999999999999999999999987643
No 38
>TIGR00688 rarD rarD protein. This uncharacterized protein is predicted to have many membrane-spanning domains.
Probab=98.62 E-value=2.9e-06 Score=78.15 Aligned_cols=137 Identities=9% Similarity=0.095 Sum_probs=102.0
Q ss_pred hHHHHHHHHHHHHHhHHHHHHHHHhhCCCCChhhHHHHHHHHhHHHHHHHHHhhchHHHHHHHHhh--hhHHHHHHHHHH
Q 018484 169 IGVLMISGALVMDSFLGNLQEVIFTVNPDTTQMEMLFCSTVVGLPFLLVPMILTGELVRAWNSCSQ--HLYVYGVLVFEA 246 (355)
Q Consensus 169 ~G~~l~l~s~~~~a~~~v~~~~l~~~~~~~~~~~l~~~~~l~~~~~ll~~~~~~ge~~~~~~~~~~--~~~~~~~l~l~~ 246 (355)
.|..+++++.++++...+..|. ..+ .++.++.++-.+++.+++.+.....++..+..+.... ....+..+.+.+
T Consensus 2 ~g~~~~i~a~~~wg~~~~~~k~-~~~---~~~~~i~~~R~~~a~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g 77 (256)
T TIGR00688 2 KGIIVSLLASFLFGYMYYYSKL-LKP---LPATDILGHRMIWSFPFMLLSVTLFRQWAALIERLKRIQKRPLILSLLLCG 77 (256)
T ss_pred CcHHHHHHHHHHHHHHHHHHHH-hcc---CCHHHHHHHHHHHHHHHHHHHHHHHcchHHHHHHHhCcccchHHHHHHHHH
Confidence 3888999999999999888865 332 4788999988888877665544333322111111110 111122344455
Q ss_pred HHHHHHHHHHHHHHHhhchHHHHHHHhHHHHHHHHHHHHHhCCCcccchhhhHHHHHHHHHHH
Q 018484 247 MATFVGQVSVLSLIALFGAATTAMITTARKAVTLFLSYLIFTKPLTEQHGTGLLLIAMGIILK 309 (355)
Q Consensus 247 ~~~~l~~~~~~~~i~~~sa~t~svv~~~k~v~~i~ls~l~f~~~~t~~~~iG~~lv~~Gv~ly 309 (355)
+.....+.+.+..++++++..++++..+.|+++.++++++++|+++..+++|+.+.++|+.+-
T Consensus 78 ~~~~~~~~~~~~a~~~~~~~~a~~l~~~~Pi~~~lla~~~l~Ek~~~~~~l~~~~~~~Gv~li 140 (256)
T TIGR00688 78 LLIGFNWWLFIWAVNNGSSLEVSLGYLINPLVMVALGRVFLKERISRFQFIAVIIATLGVISN 140 (256)
T ss_pred HHHHHHHHHHHHHHHcchHHHHHHHHHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHH
Confidence 556677889999999999999999999999999999999999999999999999999998754
No 39
>KOG4314 consensus Predicted carbohydrate/phosphate translocator [General function prediction only]
Probab=98.56 E-value=2.4e-07 Score=79.84 Aligned_cols=217 Identities=17% Similarity=0.207 Sum_probs=147.4
Q ss_pred HHHHHHHHhhHHHHHHHhhCCChhHHHHHhhcchHHHHHHHhhhcCCccccChhHHHHHHHHHHHHHHHhccCCCCCCCc
Q 018484 87 VKLSAVLMGSHGLTKGSLAFLNYPAQIMFKSTKVLPVMIMGAFIPGLRRKYPAHEYVAALLLVFGLILFTMADAQTSPNF 166 (355)
Q Consensus 87 ~~~s~~~~~~~~l~~~sL~~~s~~~~~v~ks~~pi~v~l~~~l~~gl~~~~s~~~~~~l~li~~Gv~l~~~~~~~~~~~~ 166 (355)
.|.+++..+..++...+|+.++.+..+-+-+|.-.++.+++++. +++|+...+++++++.+.|++++++.|... ..
T Consensus 57 aPF~i~Wt~aNY~Yl~AL~~is~s~asai~~CNaAFVfiLa~IV--L~D~~~~~kIlaailAI~GiVmiay~DN~~--a~ 132 (290)
T KOG4314|consen 57 APFSIFWTGANYLYLLALKKISASDASAIFACNAAFVFILAIIV--LGDRFMGFKILAAILAIGGIVMIAYADNEH--AD 132 (290)
T ss_pred cceEEEEecCCcHHHHHHHhcChhhhHHHHHhhHHHHHHHHHHH--hccchhhhhHHHHHHHhCcEEEEEeccchh--hh
Confidence 35566777888899999999999999999999999999999999 899999999999999999999999887532 45
Q ss_pred hhhHHHHHHHHHHHHHhHHHHHHHHHhhCCCCChhhHHHHHHHHhH---HH-HHHHH--HhhchHHHHHHHHhhhhHHHH
Q 018484 167 SLIGVLMISGALVMDSFLGNLQEVIFTVNPDTTQMEMLFCSTVVGL---PF-LLVPM--ILTGELVRAWNSCSQHLYVYG 240 (355)
Q Consensus 167 ~~~G~~l~l~s~~~~a~~~v~~~~l~~~~~~~~~~~l~~~~~l~~~---~~-ll~~~--~~~ge~~~~~~~~~~~~~~~~ 240 (355)
.+.|+.++..|+.+.|++-+..|+...... --+...+++..+. .+ ..|.+ .++| .+.++.....| |.
T Consensus 133 e~iGi~~AV~SA~~aAlYKV~FK~~iGnAn---~Gdaa~FmS~LGF~NL~~~~~~~lIL~~T~--VE~~qsFA~~P--WG 205 (290)
T KOG4314|consen 133 EIIGIACAVGSAFMAALYKVLFKMFIGNAN---FGDAAHFMSCLGFFNLCFISFPALILAFTG--VEHLQSFAAAP--WG 205 (290)
T ss_pred hhhhHHHHHHHHHHHHHHHHHHHHHhccCc---chhHHHHHHHHHHHHHHHHhhhHHHHHHhc--hHHHHHHhhCC--ch
Confidence 799999999999999999888877665321 1111111111111 11 11111 1222 12222111122 22
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhhchHHHHHHHhHHHHHHHHHHHHHhCCCcccchhhhHHHHHHHHHHHhccCC
Q 018484 241 VLVFEAMATFVGQVSVLSLIALFGAATTAMITTARKAVTLFLSYLIFTKPLTEQHGTGLLLIAMGIILKMLPEN 314 (355)
Q Consensus 241 ~l~l~~~~~~l~~~~~~~~i~~~sa~t~svv~~~k~v~~i~ls~l~f~~~~t~~~~iG~~lv~~Gv~ly~~~k~ 314 (355)
.+...+.....-|+.+...+....|...|+-....-.......+++-+-..+.....|..++..|.++-..+..
T Consensus 206 ~l~G~A~L~lAFN~~iN~GiaL~~PilISiG~l~~iP~NaaiDiL~q~l~~ntl~La~T~iI~i~FiLiiiP~d 279 (290)
T KOG4314|consen 206 CLCGAAGLSLAFNFLINFGIALLNPILISIGMLCGIPGNAAIDILFQELEFNTLFLAATCIICIGFILIIIPED 279 (290)
T ss_pred hhhhHHHHHHHHhhheeehhhhhchhhheehheecCcchhHHHHHHHHHHHHHHHHHHHHHHHHhHHheecccc
Confidence 22211112222244455566777788777777766666777777777777888899999999999887665443
No 40
>PF00892 EamA: EamA-like transporter family; InterPro: IPR000620 This domain is found in proteins including the Erwinia chrysanthemi PecM protein, which is involved in pectinase, cellulase and blue pigment regulation; and the Salmonella typhimurium PagO protein, the function of which is unknown. Many members of this family are classed as drug/metabolite transporters and have no known function. They are predicted to be integral membrane proteins and many of the proteins contain two copies of this domain [].; GO: 0016020 membrane
Probab=98.56 E-value=4.5e-07 Score=73.24 Aligned_cols=117 Identities=13% Similarity=0.213 Sum_probs=85.6
Q ss_pred HHHHHHHhhhhhccCCCCchhHHHHHHHHHHHHHH--H-HhcccC--CCCCCchHHHHHHHHH-HHhhHHHHHHHhhCCC
Q 018484 35 YLVNGICEEYVYNRLQFSYGWYFTFVQGFVYLVLI--Y-LQGFTT--KQMVNPWKTYVKLSAV-LMGSHGLTKGSLAFLN 108 (355)
Q Consensus 35 ~~~~~~~~k~i~~~~~f~~p~~lt~~Q~~~~~~~~--~-~~~~~~--~~~~~~~~~~~~~s~~-~~~~~~l~~~sL~~~s 108 (355)
+..+.+++|+..++ ++ |...++.+++.+.+.. . .....+ +.+...+......+.+ ...+..+.+.++++.+
T Consensus 3 ~a~~~~~~k~~~~~--~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~ 79 (126)
T PF00892_consen 3 WAIYSVFSKKLLKK--IS-PLSITFWRFLIAGILLILLLILGRKPFKNLSPRQWLWLLFLGLLGTALAYLLYFYALKYIS 79 (126)
T ss_pred eeeHHHHHHHHhcc--CC-HHHHHHHHHHHHHHHHHHHHhhccccccCCChhhhhhhhHhhccceehHHHHHHHHHHhcc
Confidence 34567788888754 34 6777788877765311 1 111111 1111222333445555 4778889999999999
Q ss_pred hhHHHHHhhcchHHHHHHHhhhcCCccccChhHHHHHHHHHHHHHHHh
Q 018484 109 YPAQIMFKSTKVLPVMIMGAFIPGLRRKYPAHEYVAALLLVFGLILFT 156 (355)
Q Consensus 109 ~~~~~v~ks~~pi~v~l~~~l~~gl~~~~s~~~~~~l~li~~Gv~l~~ 156 (355)
.+..+++..+.|++++++++++ +||+++++++.++++++.|+++..
T Consensus 80 ~~~~~~~~~~~pv~~~i~~~~~--~~e~~~~~~~~g~~l~~~g~~l~~ 125 (126)
T PF00892_consen 80 ASIVSILQYLSPVFAAILGWLF--LGERPSWRQIIGIILIIIGVVLIS 125 (126)
T ss_pred hhHHHHHHHHHHHHHHHHHHHH--cCCCCCHHHHHHHHHHHHHHHHHH
Confidence 9999999999999999999999 899999999999999999998864
No 41
>PF13536 EmrE: Multidrug resistance efflux transporter
Probab=98.52 E-value=4.9e-07 Score=72.76 Aligned_cols=78 Identities=15% Similarity=0.253 Sum_probs=66.3
Q ss_pred CchHHHHHHHHHHH-hhHHHHHHHhhCCChhHHHHHhhcchHHHHHHHhhhcCCccccChhHHHHHHHHHHHHHHHhccC
Q 018484 81 NPWKTYVKLSAVLM-GSHGLTKGSLAFLNYPAQIMFKSTKVLPVMIMGAFIPGLRRKYPAHEYVAALLLVFGLILFTMAD 159 (355)
Q Consensus 81 ~~~~~~~~~s~~~~-~~~~l~~~sL~~~s~~~~~v~ks~~pi~v~l~~~l~~gl~~~~s~~~~~~l~li~~Gv~l~~~~~ 159 (355)
.++......+++.. ....+.++|+++.+ +...++.++.|+++++++.++ +|||++++++.+++++++|+++...+|
T Consensus 32 ~~~~~~~~~g~~~~~~~~~~~~~a~~~~~-~~v~~i~~~~pi~~~ll~~~~--~~er~~~~~~~a~~l~~~Gv~li~~~~ 108 (113)
T PF13536_consen 32 KPWLWLILAGLLGFGVAYLLFFYALSYAP-ALVAAIFSLSPIFTALLSWLF--FKERLSPRRWLAILLILIGVILIAWSD 108 (113)
T ss_pred CcHHHHHHHHHHHHHHHHHHHHHHHHhCc-HHHHHHHHHHHHHHHHHHHHH--hcCCCCHHHHHHHHHHHHHHHHHhhhh
Confidence 33444444566554 77888999999999 688899999999999999999 899999999999999999999998887
Q ss_pred CC
Q 018484 160 AQ 161 (355)
Q Consensus 160 ~~ 161 (355)
.+
T Consensus 109 ~~ 110 (113)
T PF13536_consen 109 LT 110 (113)
T ss_pred cc
Confidence 54
No 42
>PF06800 Sugar_transport: Sugar transport protein; InterPro: IPR010651 This is a family of bacterial sugar transporters approximately 300 residues long. Members include glucose uptake proteins [], ribose transport proteins, and several putative and hypothetical membrane proteins probably involved in sugar transport across bacterial membranes.; GO: 0015144 carbohydrate transmembrane transporter activity, 0034219 carbohydrate transmembrane transport, 0016021 integral to membrane
Probab=98.38 E-value=4.4e-05 Score=70.24 Aligned_cols=204 Identities=13% Similarity=0.155 Sum_probs=137.5
Q ss_pred HHHHHHhhHHHHHHHhhCCChhHHHH-HhhcchHHHHHHHhhhcCCccccChhHH----HHHHHHHHHHHHHhccCCCCC
Q 018484 89 LSAVLMGSHGLTKGSLAFLNYPAQIM-FKSTKVLPVMIMGAFIPGLRRKYPAHEY----VAALLLVFGLILFTMADAQTS 163 (355)
Q Consensus 89 ~s~~~~~~~~l~~~sL~~~s~~~~~v-~ks~~pi~v~l~~~l~~gl~~~~s~~~~----~~l~li~~Gv~l~~~~~~~~~ 163 (355)
-+++...+....+.|++++.++...= --....+.+.+++.++ |+|..+..++ ++++++++|+.+.+..|.+.+
T Consensus 51 sG~~W~iGq~~qf~s~~~~GVS~tmPiStg~QLvg~sl~gv~~--fgEW~~~~~~~~G~~Al~liiiGv~lts~~~~~~~ 128 (269)
T PF06800_consen 51 SGAFWAIGQIGQFKSFKKIGVSKTMPISTGLQLVGTSLIGVLF--FGEWTTTTQKIIGFLALVLIIIGVILTSYQDKKSD 128 (269)
T ss_pred HHHHHHHHHHHHHHHHHHhcceeeeccchhHHHHHHHHHHHhh--cCCCCCcchHHHHHHHHHHHHHHHHHhcccccccc
Confidence 45777788888999999877764422 2234567788899998 8998887765 488999999999999876543
Q ss_pred C----CchhhHHHHHHHHHHHHHhHHHHHHHHHhhCCCCChhhHHHHHHHHhHHHHH-HHHHhhchHHHHHHHHhhhhHH
Q 018484 164 P----NFSLIGVLMISGALVMDSFLGNLQEVIFTVNPDTTQMEMLFCSTVVGLPFLL-VPMILTGELVRAWNSCSQHLYV 238 (355)
Q Consensus 164 ~----~~~~~G~~l~l~s~~~~a~~~v~~~~l~~~~~~~~~~~l~~~~~l~~~~~ll-~~~~~~ge~~~~~~~~~~~~~~ 238 (355)
. .....|+..++++.+.+..|.+..+ ..+ .++++..+=.+ ++..+.. +......+ . ..+...
T Consensus 129 ~~~~~~~~~kgi~~Ll~stigy~~Y~~~~~-~~~----~~~~~~~lPqa-iGm~i~a~i~~~~~~~---~----~~~k~~ 195 (269)
T PF06800_consen 129 KSSSKSNMKKGILALLISTIGYWIYSVIPK-AFH----VSGWSAFLPQA-IGMLIGAFIFNLFSKK---P----FFEKKS 195 (269)
T ss_pred ccccccchhhHHHHHHHHHHHHHHHHHHHH-hcC----CChhHhHHHHH-HHHHHHHHHHhhcccc---c----ccccch
Confidence 2 2346688888888888777776643 222 34455443222 1221111 11111110 0 011122
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHhhchHHHHHHHhHHHHHHHHHHHHHhCCCcccc----hhhhHHHHHHHHHH
Q 018484 239 YGVLVFEAMATFVGQVSVLSLIALFGAATTAMITTARKAVTLFLSYLIFTKPLTEQ----HGTGLLLIAMGIIL 308 (355)
Q Consensus 239 ~~~l~l~~~~~~l~~~~~~~~i~~~sa~t~svv~~~k~v~~i~ls~l~f~~~~t~~----~~iG~~lv~~Gv~l 308 (355)
+.. ++.++.-.++|++++...++.|..+.=..+.+..+++.+.|+++++|+=+.. .++|.++++.|.++
T Consensus 196 ~~n-il~G~~w~ignl~~~is~~~~G~a~af~lSQ~~vvIStlgGI~il~E~Kt~ke~~~~~~G~~Liv~G~il 268 (269)
T PF06800_consen 196 WKN-ILTGLIWGIGNLFYLISAQKNGVATAFTLSQLGVVISTLGGIFILKEKKTKKEMIYTLIGLILIVIGAIL 268 (269)
T ss_pred HHh-hHHHHHHHHHHHHHHHhHHhccchhhhhHHhHHHHHHHhhhheEEEecCchhhHHHHHHHHHHHHHhhhc
Confidence 322 3345666689999999999999999999999999999999999999987765 55688888777654
No 43
>TIGR03340 phn_DUF6 phosphonate utilization associated putative membrane protein. This family of hydrophobic proteins has some homology to families of integral membrane proteins such as (pfam00892) and may be a permease. It occurs in the vicinity of various types of operons for the catabolism of phosphonates in Vibrio, Pseudomonas, Polaromonas and Thiomicrospira.
Probab=98.31 E-value=1.1e-05 Score=75.29 Aligned_cols=133 Identities=11% Similarity=0.114 Sum_probs=93.0
Q ss_pred HHHHHHHHHHHHhHHHHHHHHHhhCCCCChhhHHHHHHHHhHHHHHHHHHhhchHHHHHHHHhhhhHHHHHHHHHHHHHH
Q 018484 171 VLMISGALVMDSFLGNLQEVIFTVNPDTTQMEMLFCSTVVGLPFLLVPMILTGELVRAWNSCSQHLYVYGVLVFEAMATF 250 (355)
Q Consensus 171 ~~l~l~s~~~~a~~~v~~~~l~~~~~~~~~~~l~~~~~l~~~~~ll~~~~~~ge~~~~~~~~~~~~~~~~~l~l~~~~~~ 250 (355)
+.+.+++.++.|...+..|+..++. ++ ..++....+.+.+.|........ ..+. ......+..+...++...
T Consensus 3 ~~~~~~aa~~~a~~~~~~k~~~~~~---~~--~~~~~~~~~~~~l~~~~~~~~~~-~~~~--~~~~~~~~~~~~~~~~~~ 74 (281)
T TIGR03340 3 LTLVVFSALMHAGWNLMAKSHADKE---PD--FLWWALLAHSVLLTPYGLWYLAQ-VGWS--RLPATFWLLLAISAVANM 74 (281)
T ss_pred HHHHHHHHHHHHHHHHHHhhcCCch---hH--HHHHHHHHHHHHHHHHHHHhccc-CCCC--CcchhhHHHHHHHHHHHH
Confidence 4567888899999888887655542 22 23444444444444433321100 0010 001123344555666677
Q ss_pred HHHHHHHHHHHhhchHHHHHHHhHHHHHHHHHHHHHhCCCcccchhhhHHHHHHHHHHHhc
Q 018484 251 VGQVSVLSLIALFGAATTAMITTARKAVTLFLSYLIFTKPLTEQHGTGLLLIAMGIILKML 311 (355)
Q Consensus 251 l~~~~~~~~i~~~sa~t~svv~~~k~v~~i~ls~l~f~~~~t~~~~iG~~lv~~Gv~ly~~ 311 (355)
..+.+.+...++.++...+++....|+++.+++++++||+++..+|+|+++++.|+.+-..
T Consensus 75 ~~~~~~~~a~~~~~~~~~~~l~~~~p~~~~l~~~~~~~e~~~~~~~~g~~~~~~Gv~ll~~ 135 (281)
T TIGR03340 75 VYFLGLAQAYHHADVGLVYPLARSSPLLVAIWATLTLGETLSPLAWLGILIITLGLLVLGL 135 (281)
T ss_pred HHHHHHHHHHhcCChhhhhhHHhhhHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHHhc
Confidence 7888889999999999999999999999999999999999999999999999999987553
No 44
>PF13536 EmrE: Multidrug resistance efflux transporter
Probab=98.31 E-value=2.9e-05 Score=62.38 Aligned_cols=103 Identities=22% Similarity=0.382 Sum_probs=73.6
Q ss_pred HhHHHHHHHHHhhchHHHHHHHHhhhhHHHHHHHHHHHHHH-HHHHHHHHHHHhhchHHHHHHHhHHHHHHHHHHHHHhC
Q 018484 210 VGLPFLLVPMILTGELVRAWNSCSQHLYVYGVLVFEAMATF-VGQVSVLSLIALFGAATTAMITTARKAVTLFLSYLIFT 288 (355)
Q Consensus 210 ~~~~~ll~~~~~~ge~~~~~~~~~~~~~~~~~l~l~~~~~~-l~~~~~~~~i~~~sa~t~svv~~~k~v~~i~ls~l~f~ 288 (355)
++.+.+.+.....++..+......+++.. .+...++.+. ..+..+++..++.++ ..+++..+.|+++.++|.++|+
T Consensus 7 ~~~l~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~g~~~~~~~~~~~~~a~~~~~~-~v~~i~~~~pi~~~ll~~~~~~ 83 (113)
T PF13536_consen 7 FSVLFLLIILLIRGRLRDLFRALRRKPWL--WLILAGLLGFGVAYLLFFYALSYAPA-LVAAIFSLSPIFTALLSWLFFK 83 (113)
T ss_pred HHHHHHHHHHHHHccHHHHHHHHHhCcHH--HHHHHHHHHHHHHHHHHHHHHHhCcH-HHHHHHHHHHHHHHHHHHHHhc
Confidence 34444444444455554444433333332 2333344443 677888899999996 7778999999999999999999
Q ss_pred CCcccchhhhHHHHHHHHHHHhccCCC
Q 018484 289 KPLTEQHGTGLLLIAMGIILKMLPENK 315 (355)
Q Consensus 289 ~~~t~~~~iG~~lv~~Gv~ly~~~k~~ 315 (355)
|+++..+++|++++++|+.+-.+.+.+
T Consensus 84 er~~~~~~~a~~l~~~Gv~li~~~~~~ 110 (113)
T PF13536_consen 84 ERLSPRRWLAILLILIGVILIAWSDLT 110 (113)
T ss_pred CCCCHHHHHHHHHHHHHHHHHhhhhcc
Confidence 999999999999999999987766543
No 45
>PF05653 Mg_trans_NIPA: Magnesium transporter NIPA; InterPro: IPR008521 This family consists of several eukaryotic proteins of unknown function.
Probab=98.30 E-value=1.3e-05 Score=75.60 Aligned_cols=211 Identities=14% Similarity=0.196 Sum_probs=119.5
Q ss_pred HHHHHHH-HHhhHHHHHHHhhCCChhHHHHHhhcchHHHHHHHhhhcCCccccChhHHHHHHHHHHHHHHHhccCCCCCC
Q 018484 86 YVKLSAV-LMGSHGLTKGSLAFLNYPAQIMFKSTKVLPVMIMGAFIPGLRRKYPAHEYVAALLLVFGLILFTMADAQTSP 164 (355)
Q Consensus 86 ~~~~s~~-~~~~~~l~~~sL~~~s~~~~~v~ks~~pi~v~l~~~l~~gl~~~~s~~~~~~l~li~~Gv~l~~~~~~~~~~ 164 (355)
.+..|+. +..+..++..|+.+.|.+..+=+-+...++.++++..+ +|||++++++.+..++++|..+......+.++
T Consensus 52 ~W~~G~~~~~~g~~~~~~Al~~ap~slv~Plg~~~lv~~~~~a~~~--l~e~~~~~~~~G~~l~i~G~~liv~~~~~~~~ 129 (300)
T PF05653_consen 52 LWWIGLLLMVLGEILNFVALGFAPASLVAPLGALSLVFNAVLARFF--LGEKLTRRDIVGCALIILGSVLIVIFAPKEEP 129 (300)
T ss_pred HHHHHHHHHhcchHHHHHHHHhhhHHHHHHHHhhhhhhHHHHhHHH--hcccchHhHHhhHHHHHhhheeeEEeCCCCCC
Confidence 3445543 45667789999999999999999999999999999999 89999999999999999998876544322211
Q ss_pred Cc------------hhhHHHHHHHHHHHHHhHHHHHHHHHhhCCCCChhhHHHHHH---HHhHHHHH----HH----HHh
Q 018484 165 NF------------SLIGVLMISGALVMDSFLGNLQEVIFTVNPDTTQMEMLFCST---VVGLPFLL----VP----MIL 221 (355)
Q Consensus 165 ~~------------~~~G~~l~l~s~~~~a~~~v~~~~l~~~~~~~~~~~l~~~~~---l~~~~~ll----~~----~~~ 221 (355)
.. ....+........+ .+.. ...+++++. .++.|.. +++..-.+ .. ..+
T Consensus 130 ~~t~~~l~~~~~~~~fl~y~~~~~~~~~-~L~~----~~~~r~g~~---~i~vyi~i~sl~Gs~tvl~~K~i~~~i~~~~ 201 (300)
T PF05653_consen 130 IHTLDELIALLSQPGFLVYFILVLVLIL-ILIF----FIKPRYGRR---NILVYISICSLIGSFTVLSAKAISILIKLTF 201 (300)
T ss_pred cCCHHHHHHHhcCcceehhHHHHHHHHH-HHHH----hhcchhccc---ceEEEEEEeccccchhhhHHHHHHHHHHHHh
Confidence 11 11122222111111 1111 111121111 1122211 11111000 00 001
Q ss_pred hchHHHHHHHHhhhhHHHHHHHHHHHHHHHHH-HHHHHHHHhhchHHHHH-HHhHHHHHHHHHHHHHhCC--Ccccc---
Q 018484 222 TGELVRAWNSCSQHLYVYGVLVFEAMATFVGQ-VSVLSLIALFGAATTAM-ITTARKAVTLFLSYLIFTK--PLTEQ--- 294 (355)
Q Consensus 222 ~ge~~~~~~~~~~~~~~~~~l~l~~~~~~l~~-~~~~~~i~~~sa~t~sv-v~~~k~v~~i~ls~l~f~~--~~t~~--- 294 (355)
.|+ + ...+|..|..++....+ .+.| .+.+..+++++++.... .-..-...+++-|.++|+| ..++.
T Consensus 202 ~g~-----~-~f~~~~~y~l~~~~v~~-~~~Q~~~LN~aL~~fd~~~V~P~~~v~~t~~~i~~g~i~f~e~~~~~~~~~~ 274 (300)
T PF05653_consen 202 SGD-----N-QFTYPLTYLLLLVLVVT-AVLQLYYLNKALKRFDTSLVVPVYYVFFTLSSIIGGAIFFQEFSRMTAWQII 274 (300)
T ss_pred cCc-----h-hhhhhHHHHHHHHHHHH-HHHHHHHHHHHHHhccceEEEeehhHHHHHHHHHHHHHHhcccccccHHHHH
Confidence 121 0 11344445444333333 4555 45667899988765433 3333456788889999996 45553
Q ss_pred -hhhhHHHHHHHHHHHhccC
Q 018484 295 -HGTGLLLIAMGIILKMLPE 313 (355)
Q Consensus 295 -~~iG~~lv~~Gv~ly~~~k 313 (355)
...|..+++.|+++-+..|
T Consensus 275 ~~~~G~~~ii~GV~lL~~~~ 294 (300)
T PF05653_consen 275 GFLCGFLIIIIGVFLLSSSK 294 (300)
T ss_pred HHHHHHHHHHHhhheeeccC
Confidence 4567777888887755333
No 46
>PRK02971 4-amino-4-deoxy-L-arabinose-phosphoundecaprenol flippase subunit ArnF; Provisional
Probab=98.25 E-value=8e-05 Score=61.30 Aligned_cols=121 Identities=12% Similarity=0.133 Sum_probs=83.9
Q ss_pred hHHHHHHHHHHHHHhHHHHHHHHHhhCCCCChhhHHHHHHHHhHHHHHHHHHhhchHHHHHHHHhhhhHHHHHHHHHHHH
Q 018484 169 IGVLMISGALVMDSFLGNLQEVIFTVNPDTTQMEMLFCSTVVGLPFLLVPMILTGELVRAWNSCSQHLYVYGVLVFEAMA 248 (355)
Q Consensus 169 ~G~~l~l~s~~~~a~~~v~~~~l~~~~~~~~~~~l~~~~~l~~~~~ll~~~~~~ge~~~~~~~~~~~~~~~~~l~l~~~~ 248 (355)
.|+++++++.++.+...+..|+-.++.+..+. ... .+ ..+ .. . ..|. .++.+..++
T Consensus 2 ~~~~~i~~sv~l~~~gQl~~K~g~~~~g~~~~---~~~-~~---~~~--~~-~------------~~p~--~~i~lgl~~ 57 (129)
T PRK02971 2 MGYLWGLASVLLASVAQLSLKWGMSRLPLLSH---AWD-FI---AAL--LA-F------------GLAL--RAVLLGLAG 57 (129)
T ss_pred ccHHHHHHHHHHHHHHHHHHHHHHhhCCCccc---hhH-HH---HHH--HH-H------------hccH--HHHHHHHHH
Confidence 48889999999988888877765554332111 000 00 000 00 0 0121 123444556
Q ss_pred HHHHHHHHHHHHHhhchHHHHHHHhHHHHHHHHHHHH--HhCCCcccchhhhHHHHHHHHHHHhccC
Q 018484 249 TFVGQVSVLSLIALFGAATTAMITTARKAVTLFLSYL--IFTKPLTEQHGTGLLLIAMGIILKMLPE 313 (355)
Q Consensus 249 ~~l~~~~~~~~i~~~sa~t~svv~~~k~v~~i~ls~l--~f~~~~t~~~~iG~~lv~~Gv~ly~~~k 313 (355)
..++..++...+++.+...+..+.....+...+.++. +|||++|+.+++|++++++|+++-+..+
T Consensus 58 ~~la~~~w~~aL~~~~ls~Ayp~~sl~~~~v~~~~~~~~~~~E~ls~~~~iGi~lIi~GV~lv~~~~ 124 (129)
T PRK02971 58 YALSMLCWLKALRYLPLSRAYPLLSLSYALVYLAAMLLPWFNETFSLKKTLGVACIMLGVWLINLPT 124 (129)
T ss_pred HHHHHHHHHHHHHhCCcHHHHHHHHHHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHHHHhccCC
Confidence 6678899999999999999888888887778777875 8999999999999999999999976433
No 47
>PLN00411 nodulin MtN21 family protein; Provisional
Probab=98.10 E-value=0.00014 Score=70.45 Aligned_cols=138 Identities=12% Similarity=0.101 Sum_probs=96.0
Q ss_pred HHHHHHHHHHHHHhHHHHHHHHHhhCCCCChhhHHHHHHHHhHHHHHHHHHhhchHHHHHHHHhhhhHHHHHHHHHHHHH
Q 018484 170 GVLMISGALVMDSFLGNLQEVIFTVNPDTTQMEMLFCSTVVGLPFLLVPMILTGELVRAWNSCSQHLYVYGVLVFEAMAT 249 (355)
Q Consensus 170 G~~l~l~s~~~~a~~~v~~~~l~~~~~~~~~~~l~~~~~l~~~~~ll~~~~~~ge~~~~~~~~~~~~~~~~~l~l~~~~~ 249 (355)
-++.+++..++++-..++.+..++.. .++..+.+|-..++.+++++..+..... ...+ ..+...+..+.+.++.+
T Consensus 14 ~~~~~~~~q~~~~~~~~~~k~a~~~G--~~~~~~~~~R~~iA~l~Ll~~~~~~~~~-~~~~--~~~~~~~~~l~l~g~~g 88 (358)
T PLN00411 14 FLTAMLATETSVVGISTLFKVATSKG--LNIYPFLGYSYLLASLLLLPSLFFTNRS-RSLP--PLSVSILSKIGLLGFLG 88 (358)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHCC--CCccHHHHHHHHHHHHHHHHHHHHHHHh-cccC--cchHHHHHHHHHHHHHH
Confidence 44555556667777777777766542 3566777777777776665554332110 0000 00112233444445555
Q ss_pred HHHHHHHHHHHHhhchHHHHHHHhHHHHHHHHHHHHH------hCCCcccchhhhHHHHHHHHHHHhcc
Q 018484 250 FVGQVSVLSLIALFGAATTAMITTARKAVTLFLSYLI------FTKPLTEQHGTGLLLIAMGIILKMLP 312 (355)
Q Consensus 250 ~l~~~~~~~~i~~~sa~t~svv~~~k~v~~i~ls~l~------f~~~~t~~~~iG~~lv~~Gv~ly~~~ 312 (355)
++.+.+.+..+++++|..++++.++.|+++.++++++ ++|+++..+++|+++.++|+.+-...
T Consensus 89 ~~~~~~~~~gl~~tsa~~asll~~~~P~~~~lla~~~~~e~~~~~er~~~~~~~G~~l~~~Gv~ll~~~ 157 (358)
T PLN00411 89 SMYVITGYIGIEYSNPTLASAISNITPALTFILAIIFRMEKVSFKERSSVAKVMGTILSLIGALVVIFY 157 (358)
T ss_pred HHHHHHHHHHHhhccHHHHHHHHHhhHHHHHHHHHHHHhchhhhcccccHHHHHHHHHHHHHHHHHHHc
Confidence 5566678899999999999999999999999999999 69999999999999999999876543
No 48
>COG2962 RarD Predicted permeases [General function prediction only]
Probab=97.99 E-value=0.0003 Score=64.66 Aligned_cols=140 Identities=14% Similarity=0.118 Sum_probs=104.5
Q ss_pred hhhHHHHHHHHHHHHHhHHHHHHHHHhhCCCCChhhHHHHHHHHhHHHHHHHHHhhchHHHHHHHHhhhhHHHHHHHHHH
Q 018484 167 SLIGVLMISGALVMDSFLGNLQEVIFTVNPDTTQMEMLFCSTVVGLPFLLVPMILTGELVRAWNSCSQHLYVYGVLVFEA 246 (355)
Q Consensus 167 ~~~G~~l~l~s~~~~a~~~v~~~~l~~~~~~~~~~~l~~~~~l~~~~~ll~~~~~~ge~~~~~~~~~~~~~~~~~l~l~~ 246 (355)
.--|+++.+.|-+.+++.-.|.+- .+. .+..|+..+-.+++.|+.+......+...+.++ ..+.|..+..+.+++
T Consensus 5 ~~~Gil~~l~Ay~lwG~lp~y~kl-l~~---~~~~eIlahRviwS~~~~l~ll~~~r~~~~~~~-~~~~p~~~~~~~l~a 79 (293)
T COG2962 5 SRKGILLALLAYLLWGLLPLYFKL-LEP---LPATEILAHRVIWSFPFMLALLFLLRQWRELKQ-LLKQPKTLLMLALTA 79 (293)
T ss_pred ccchhHHHHHHHHHHHHHHHHHHH-Hcc---CCHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHH-HHhCcHHHHHHHHHH
Confidence 346999999999999998877743 433 356788888888888887766555544444333 345565554444433
Q ss_pred HHHHHHHHHH-HHHHHhhchHHHHHHHhHHHHHHHHHHHHHhCCCcccchhhhHHHHHHHHHHHhcc
Q 018484 247 MATFVGQVSV-LSLIALFGAATTAMITTARKAVTLFLSYLIFTKPLTEQHGTGLLLIAMGIILKMLP 312 (355)
Q Consensus 247 ~~~~l~~~~~-~~~i~~~sa~t~svv~~~k~v~~i~ls~l~f~~~~t~~~~iG~~lv~~Gv~ly~~~ 312 (355)
.. ...|... -+...+-..+-+|.-=.++|.+.+++|.++++|+++..||+.+++..+|+....+.
T Consensus 80 ~l-i~~nW~lfiWAvn~g~~leaSLGY~InPL~~VllG~lflkErls~~Q~iAV~lA~~GV~~~~~~ 145 (293)
T COG2962 80 LL-IGLNWWLFIWAVNNGHVLEASLGYFINPLVNVLLGRLFLKERLSRLQWIAVGLAAAGVLIQTWL 145 (293)
T ss_pred HH-HHHHHHHhheecCCCchhHHHhHHHHHHHHHHHHHHHHHHhhccHHHHHHHHHHHHHHHHHHHH
Confidence 33 2445544 46778888899999999999999999999999999999999999999999876554
No 49
>PRK15051 4-amino-4-deoxy-L-arabinose-phosphoundecaprenol flippase subunit ArnE; Provisional
Probab=97.96 E-value=0.00012 Score=58.72 Aligned_cols=64 Identities=11% Similarity=0.047 Sum_probs=59.5
Q ss_pred HHHHhhHHHHHHHhhCCChhHHHHHhhcchHHHHHHHhhhcCCccccChhHHHHHHHHHHHHHHHh
Q 018484 91 AVLMGSHGLTKGSLAFLNYPAQIMFKSTKVLPVMIMGAFIPGLRRKYPAHEYVAALLLVFGLILFT 156 (355)
Q Consensus 91 ~~~~~~~~l~~~sL~~~s~~~~~v~ks~~pi~v~l~~~l~~gl~~~~s~~~~~~l~li~~Gv~l~~ 156 (355)
+++..+..+...+++.+|.+.+-.+-+..++++++.++++ ++||+++++++++.++++|+++.+
T Consensus 45 ~~~~l~~~~~~~al~~iplg~Ay~~~~l~~v~~~~~~~l~--f~E~ls~~~~~Gi~lii~Gv~~i~ 108 (111)
T PRK15051 45 ACLGLAMVLWLLVLQNVPVGIAYPMLSLNFVWVTLAAVKL--WHEPVSPRHWCGVAFIIGGIVILG 108 (111)
T ss_pred HHHHHHHHHHHHHHhhCChHHHHHHHHHHHHHHHHHHHHH--hCCCCCHHHHHHHHHHHHHHHHHh
Confidence 4567888999999999999999888899999999999999 899999999999999999998875
No 50
>TIGR00950 2A78 Carboxylate/Amino Acid/Amine Transporter.
Probab=97.93 E-value=0.00021 Score=65.60 Aligned_cols=114 Identities=14% Similarity=0.048 Sum_probs=81.5
Q ss_pred HHHHHHHHhhCCCCChhhHHHHHHHHhHHHHHHHHHhhchHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHHHHHhhc
Q 018484 185 GNLQEVIFTVNPDTTQMEMLFCSTVVGLPFLLVPMILTGELVRAWNSCSQHLYVYGVLVFEAMATFVGQVSVLSLIALFG 264 (355)
Q Consensus 185 ~v~~~~l~~~~~~~~~~~l~~~~~l~~~~~ll~~~~~~ge~~~~~~~~~~~~~~~~~l~l~~~~~~l~~~~~~~~i~~~s 264 (355)
.+..|...+.. .++..+.++-.+.+.+++.+..... . ...+....+..++++..+.+.+.+..+++.+
T Consensus 5 ~~~~k~~~~~~--~~~~~~~~~r~~~~~l~l~~~~~~~---~-------~~~~~~~~~~~~~~~~~l~~~~~~~a~~~~~ 72 (260)
T TIGR00950 5 GVVIGQYLEGQ--VPLYFAVFRRLIFALLLLLPLLRRR---P-------PLKRLLRLLLLGALQIGVFYVLYFVAVKRLP 72 (260)
T ss_pred HHHHHHHHhcC--CCHHHHHHHHHHHHHHHHHHHHHhc---c-------CHhHHHHHHHHHHHHHHHHHHHHHHHHHhcC
Confidence 33444444432 3566777776666665554432211 0 0111223444445555677888999999999
Q ss_pred hHHHHHHHhHHHHHHHHHHHHHhCCCcccchhhhHHHHHHHHHHHh
Q 018484 265 AATTAMITTARKAVTLFLSYLIFTKPLTEQHGTGLLLIAMGIILKM 310 (355)
Q Consensus 265 a~t~svv~~~k~v~~i~ls~l~f~~~~t~~~~iG~~lv~~Gv~ly~ 310 (355)
+...+++..+.|+++.+++.++++|++++.+++|+.+.+.|+.+..
T Consensus 73 ~~~~~ii~~~~P~~~~~~~~l~~~e~~~~~~~~gi~i~~~Gv~li~ 118 (260)
T TIGR00950 73 VGEAALLLYLAPLYVTLLSDLMGKERPRKLVLLAAVLGLAGAVLLL 118 (260)
T ss_pred hhhhHHHHhhhHHHHHHHHHHHccCCCcHHHHHHHHHHHHhHHhhc
Confidence 9999999999999999999999999999999999999999998865
No 51
>PF08449 UAA: UAA transporter family; InterPro: IPR013657 This family includes transporters with a specificity for UDP-N-acetylglucosamine []. ; GO: 0055085 transmembrane transport
Probab=97.81 E-value=0.00059 Score=64.49 Aligned_cols=131 Identities=16% Similarity=0.238 Sum_probs=89.4
Q ss_pred HHHHHHHHHhhCCCC-ChhhHHHHHHHHhHHHHHHHHHhhchHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 018484 184 LGNLQEVIFTVNPDT-TQMEMLFCSTVVGLPFLLVPMILTGELVRAWNSCSQHLYVYGVLVFEAMATFVGQVSVLSLIAL 262 (355)
Q Consensus 184 ~~v~~~~l~~~~~~~-~~~~l~~~~~l~~~~~ll~~~~~~ge~~~~~~~~~~~~~~~~~l~l~~~~~~l~~~~~~~~i~~ 262 (355)
..+.||++.++.... .+.-+.+...........+.....+ .+.....| +......+++.++++.+.+..+++
T Consensus 15 ~g~~qE~i~~~~~~~~~~~~lt~~q~~~~~~~~~~~~~~~~-----~~~~~~~~--~~~~~~~~~~~~~~~~~~~~al~~ 87 (303)
T PF08449_consen 15 YGILQEKIMTTPYGSPFPLFLTFVQFAFNALFSFILLSLFK-----FPKSRKIP--LKKYAILSFLFFLASVLSNAALKY 87 (303)
T ss_pred HHHHHHHHHcCCCCCcccHHHHHHHHHHHHHHHHHHHHhcc-----ccCCCcCh--HHHHHHHHHHHHHHHHHHHHHHHh
Confidence 456899988875432 2344444444433333322222222 00001112 212223356667888889999999
Q ss_pred hchHHHHHHHhHHHHHHHHHHHHHhCCCcccchhhhHHHHHHHHHHHhccCCCCCCCCC
Q 018484 263 FGAATTAMITTARKAVTLFLSYLIFTKPLTEQHGTGLLLIAMGIILKMLPENKAPANNR 321 (355)
Q Consensus 263 ~sa~t~svv~~~k~v~~i~ls~l~f~~~~t~~~~iG~~lv~~Gv~ly~~~k~~~~~~~~ 321 (355)
.+-.+..+.-..+++.+.++++++++++.+..++++++++.+|+.+....+.++++++.
T Consensus 88 i~~p~~~~~ks~~~i~vmi~~~l~~~k~y~~~~~~~v~li~~Gv~~~~~~~~~~~~~~~ 146 (303)
T PF08449_consen 88 ISYPTQIVFKSSKPIPVMILGVLILGKRYSRRQYLSVLLITIGVAIFTLSDSSSSSSSN 146 (303)
T ss_pred CChHHHHHHhhhHHHHHHHHHHHhcCccccHHHHHHHHHHHhhHheeeecccccccccc
Confidence 99999999999999999999999999999999999999999999999988766554433
No 52
>PF03151 TPT: Triose-phosphate Transporter family; InterPro: IPR004853 This family consists entirely of aligned regions from Drosophila melanogaster proteins. O49724 from SWISSPROT contains three repeats of this region. In other proteins, the aligned region is located towards the C terminus. The function of the aligned region is unknown.
Probab=97.68 E-value=0.00099 Score=55.96 Aligned_cols=66 Identities=8% Similarity=0.128 Sum_probs=59.4
Q ss_pred HHHHHHhhHHHHHHHhhCCChhHHHHHhhcchHHHHHHHhhhcCCccccChhHHHHHHHHHHHHHHHh
Q 018484 89 LSAVLMGSHGLTKGSLAFLNYPAQIMFKSTKVLPVMIMGAFIPGLRRKYPAHEYVAALLLVFGLILFT 156 (355)
Q Consensus 89 ~s~~~~~~~~l~~~sL~~~s~~~~~v~ks~~pi~v~l~~~l~~gl~~~~s~~~~~~l~li~~Gv~l~~ 156 (355)
.+++.......++..+++++.-+++++...+.+.+.+++.++ ++|++++.++.|+++.++|+.+..
T Consensus 87 ~~~~~~~~n~~~f~~i~~tS~lt~~v~~~~K~~~~i~~s~~~--f~~~~t~~~~~G~~l~~~G~~~Ys 152 (153)
T PF03151_consen 87 SGLLAFLYNLSSFLLIKLTSPLTYSVLGNVKRILVILLSVIF--FGEPITPLQIIGIVLALVGVLLYS 152 (153)
T ss_pred HHHHHHHHHHHHHHHhhhcChhHHHHHHHHHHHHHHHHHhhh--cCCcCCHHHHHHHHHHHHHHheee
Confidence 455566777788999999999999999999999999999999 899999999999999999998753
No 53
>TIGR00817 tpt Tpt phosphate/phosphoenolpyruvate translocator. specificities overlap.
Probab=97.68 E-value=0.00092 Score=63.04 Aligned_cols=124 Identities=16% Similarity=0.186 Sum_probs=83.1
Q ss_pred HHHhHHHHHHHHHhhCCCCChhhHHHHHHHHhHHHHHHHHHhhchHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHHH
Q 018484 180 MDSFLGNLQEVIFTVNPDTTQMEMLFCSTVVGLPFLLVPMILTGELVRAWNSCSQHLYVYGVLVFEAMATFVGQVSVLSL 259 (355)
Q Consensus 180 ~~a~~~v~~~~l~~~~~~~~~~~l~~~~~l~~~~~ll~~~~~~ge~~~~~~~~~~~~~~~~~l~l~~~~~~l~~~~~~~~ 259 (355)
++....+++|...++.+ .+..+.+....++.....+. ...+.. +..+ ...+.+..++..+++.++.+.+.+..
T Consensus 13 ~~~~~~~~NK~~l~~~~--~P~~~~~~~~~~~~~~~~~~-~~~~~~-~~~~---~~~~~~~~~~~~g~~~~~~~~~~~~~ 85 (302)
T TIGR00817 13 LNVYFNIYNKKLLNVFP--YPYFKTLISLAVGSLYCLLS-WSSGLP-KRLK---ISSALLKLLLPVAIVHTIGHVTSNVS 85 (302)
T ss_pred HHHHHHHHHHHHHhhCC--hhHHHHHHHHHHHHHHHHHH-HHhCCC-CCCC---CCHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33334567777776432 35555555444444333221 111100 0000 01123444445566667778889999
Q ss_pred HHhhchHHHHHHHhHHHHHHHHHHHHHhCCCcccchhhhHHHHHHHHHHHh
Q 018484 260 IALFGAATTAMITTARKAVTLFLSYLIFTKPLTEQHGTGLLLIAMGIILKM 310 (355)
Q Consensus 260 i~~~sa~t~svv~~~k~v~~i~ls~l~f~~~~t~~~~iG~~lv~~Gv~ly~ 310 (355)
++++++...+++..+.|+++.+++.++++|+++..+++|++++++|+.+..
T Consensus 86 l~~~s~s~~~li~~~~Pv~~~ll~~~~~~e~~~~~~~~~l~l~~~Gv~l~~ 136 (302)
T TIGR00817 86 LSKVAVSFTHTIKAMEPFFSVVLSAFFLGQEFPSTLWLSLLPIVGGVALAS 136 (302)
T ss_pred HHhccHHHHHHHHhcchHHHHHHHHHHhCCCCcHHHHHHHHHHHHHHhhhc
Confidence 999999999999999999999999999999999999999999999998643
No 54
>PF04142 Nuc_sug_transp: Nucleotide-sugar transporter; InterPro: IPR007271 This family of membrane proteins transport nucleotide sugars from the cytoplasm into golgi vesicles. P78382 from SWISSPROT transports CMP-sialic acid, P78381 from SWISSPROT transports UDP-galactose and Q9Y2D2 from SWISSPROT transports UDP-GlcNAc. This family has some but not complete overlap with the UDP-galactose transporter family IPR004689 from INTERPRO.; GO: 0005351 sugar:hydrogen symporter activity, 0008643 carbohydrate transport, 0000139 Golgi membrane, 0016021 integral to membrane
Probab=97.67 E-value=0.00057 Score=62.58 Aligned_cols=72 Identities=15% Similarity=0.308 Sum_probs=65.0
Q ss_pred HHHHHHHHHHHHHHHHhhchHHHHHHHhHHHHHHHHHHHHHhCCCcccchhhhHHHHHHHHHHHhccCCCCC
Q 018484 246 AMATFVGQVSVLSLIALFGAATTAMITTARKAVTLFLSYLIFTKPLTEQHGTGLLLIAMGIILKMLPENKAP 317 (355)
Q Consensus 246 ~~~~~l~~~~~~~~i~~~sa~t~svv~~~k~v~~i~ls~l~f~~~~t~~~~iG~~lv~~Gv~ly~~~k~~~~ 317 (355)
+++-.+.|...+..+++.+|.+..+....|.+++-++++++++++++..||+++.+.+.|+.+........+
T Consensus 24 A~lY~~qn~L~~~al~~ld~~t~qvl~q~kIl~TAl~s~~~L~r~ls~~qW~aL~lL~~Gv~lv~~~~~~~~ 95 (244)
T PF04142_consen 24 ALLYAIQNNLQFVALSYLDPSTFQVLSQSKILFTALFSVLLLKRRLSRRQWLALFLLVAGVVLVQLSSSQSS 95 (244)
T ss_pred HHHHHHHHHHHHHHHHhCCHHHHHHHHhhHHHHHHHHHHHHHHcccchhhHHHHHHHHHHHheeecCCcccc
Confidence 444557788999999999999999999999999999999999999999999999999999999887766553
No 55
>PRK15051 4-amino-4-deoxy-L-arabinose-phosphoundecaprenol flippase subunit ArnE; Provisional
Probab=97.61 E-value=0.00074 Score=54.12 Aligned_cols=61 Identities=13% Similarity=0.147 Sum_probs=53.9
Q ss_pred HHHHHHHHHHHHhhchHHHHHHHhHHHHHHHHHHHHHhCCCcccchhhhHHHHHHHHHHHh
Q 018484 250 FVGQVSVLSLIALFGAATTAMITTARKAVTLFLSYLIFTKPLTEQHGTGLLLIAMGIILKM 310 (355)
Q Consensus 250 ~l~~~~~~~~i~~~sa~t~svv~~~k~v~~i~ls~l~f~~~~t~~~~iG~~lv~~Gv~ly~ 310 (355)
.++..++...+++.+...+.....+..+.+.++|+++|||++|+.+++|++++++|+.+-.
T Consensus 48 ~l~~~~~~~al~~iplg~Ay~~~~l~~v~~~~~~~l~f~E~ls~~~~~Gi~lii~Gv~~i~ 108 (111)
T PRK15051 48 GLAMVLWLLVLQNVPVGIAYPMLSLNFVWVTLAAVKLWHEPVSPRHWCGVAFIIGGIVILG 108 (111)
T ss_pred HHHHHHHHHHHhhCChHHHHHHHHHHHHHHHHHHHHHhCCCCCHHHHHHHHHHHHHHHHHh
Confidence 3566777888999998888887789999999999999999999999999999999997643
No 56
>PRK11272 putative DMT superfamily transporter inner membrane protein; Provisional
Probab=97.58 E-value=0.003 Score=59.36 Aligned_cols=127 Identities=15% Similarity=0.068 Sum_probs=84.9
Q ss_pred HHHHHHHHHhHHHHHHHHHhhCCCCChhhHHHHHHHHhHHHHHHHHHhhchHHHHHHHHhhhhHHHHHHHHHHHH-HHHH
Q 018484 174 ISGALVMDSFLGNLQEVIFTVNPDTTQMEMLFCSTVVGLPFLLVPMILTGELVRAWNSCSQHLYVYGVLVFEAMA-TFVG 252 (355)
Q Consensus 174 ~l~s~~~~a~~~v~~~~l~~~~~~~~~~~l~~~~~l~~~~~ll~~~~~~ge~~~~~~~~~~~~~~~~~l~l~~~~-~~l~ 252 (355)
.++-.++++...+..|...+ ..++.+..++-..++.+++++.....+... .....+......+.. ...+
T Consensus 13 ~~~~~~iWg~~~~~~K~~~~---~~~p~~~~~~R~~~a~l~ll~~~~~~~~~~-------~~~~~~~~~~~~g~~~~~~~ 82 (292)
T PRK11272 13 LFALYIIWGSTYLVIRIGVE---SWPPLMMAGVRFLIAGILLLAFLLLRGHPL-------PTLRQWLNAALIGLLLLAVG 82 (292)
T ss_pred HHHHHHHHhhHHHHHHHHhc---cCCHHHHHHHHHHHHHHHHHHHHHHhCCCC-------CcHHHHHHHHHHHHHHHHHH
Confidence 34445667777777765444 246788888777777766655443322100 001112222222322 2345
Q ss_pred HHHHHHHH-HhhchHHHHHHHhHHHHHHHHHHHHHhCCCcccchhhhHHHHHHHHHHHhc
Q 018484 253 QVSVLSLI-ALFGAATTAMITTARKAVTLFLSYLIFTKPLTEQHGTGLLLIAMGIILKML 311 (355)
Q Consensus 253 ~~~~~~~i-~~~sa~t~svv~~~k~v~~i~ls~l~f~~~~t~~~~iG~~lv~~Gv~ly~~ 311 (355)
+.+.+... ++.++...++...+.|+++.+++.+ ++|+++..+++|+.+.++|+.+-..
T Consensus 83 ~~~~~~~~~~~~~a~~a~~l~~~~Pl~~~lla~~-~~e~~~~~~~~~~~la~~Gv~ll~~ 141 (292)
T PRK11272 83 NGMVTVAEHQNVPSGIAAVVVATVPLFTLCFSRL-FGIRTRKLEWLGIAIGLAGIVLLNS 141 (292)
T ss_pred HHHHHHHHHccCcHHHHHHHHHHHHHHHHHHHHH-hcccCchhHHHHHHHHHHhHHHHhc
Confidence 56666676 8888888999999999999999985 7999999999999999999987653
No 57
>PTZ00343 triose or hexose phosphate/phosphate translocator; Provisional
Probab=97.57 E-value=0.0021 Score=62.11 Aligned_cols=139 Identities=14% Similarity=0.108 Sum_probs=92.1
Q ss_pred hhhHHHHHHHHHHHHHhHHHHHHHHHhhCCCCChhhHHHHHHHHhHHHHHHHHHhhchHHHHHHHHhhhhHHHHHHHHHH
Q 018484 167 SLIGVLMISGALVMDSFLGNLQEVIFTVNPDTTQMEMLFCSTVVGLPFLLVPMILTGELVRAWNSCSQHLYVYGVLVFEA 246 (355)
Q Consensus 167 ~~~G~~l~l~s~~~~a~~~v~~~~l~~~~~~~~~~~l~~~~~l~~~~~ll~~~~~~ge~~~~~~~~~~~~~~~~~l~l~~ 246 (355)
++.-..+.+..-.++.....+.|.+++..+ -|+.+..+..+++..+..+.. ..+ ..+..+. ......+..++..+
T Consensus 47 ~~~~~~~~~~wy~~s~~~~~~nK~vl~~~~--~P~~l~~~~~~~~~l~~~~~~-~~~-~~~~~~~-~~~~~~~~~llp~g 121 (350)
T PTZ00343 47 KWKLALLFLTWYALNVLYVVDNKLALNMLP--LPWTISSLQLFVGWLFALLYW-ATG-FRKIPRI-KSLKLFLKNFLPQG 121 (350)
T ss_pred cHHHHHHHHHHHHHHHHHHHHHHHHHHhCC--hhHHHHHHHHHHHHHHHHHHH-HhC-CCCCCCC-CCHHHHHHHHHHHH
Confidence 344444555555566666777787777542 266666665555544332221 111 0000000 00111233455556
Q ss_pred HHHHHHHHHHHHHHHhhchHHHHHHHhHHHHHHHHHHHHHhCCCcccchhhhHHHHHHHHHHHh
Q 018484 247 MATFVGQVSVLSLIALFGAATTAMITTARKAVTLFLSYLIFTKPLTEQHGTGLLLIAMGIILKM 310 (355)
Q Consensus 247 ~~~~l~~~~~~~~i~~~sa~t~svv~~~k~v~~i~ls~l~f~~~~t~~~~iG~~lv~~Gv~ly~ 310 (355)
+++..++...+..++.+++..++++-.+.|+++.+++.++++|+++..+++|++++++|+.+-.
T Consensus 122 l~~~~~~~~~~~sl~~~svs~~~iika~~Pvft~lls~~~l~ek~s~~~~l~l~l~v~Gv~l~~ 185 (350)
T PTZ00343 122 LCHLFVHFGAVISMGLGAVSFTHVVKAAEPVFTALLSILFLKQFLNLYAYLSLIPIVGGVALAS 185 (350)
T ss_pred HHHHHHHHHHHHHHhhccHHHHHHHHHhhHHHHHHHHHHHhCCCccHHHHHHHHHHHHHHHhee
Confidence 6776667777788999999999999999999999999999999999999999999999998855
No 58
>COG2510 Predicted membrane protein [Function unknown]
Probab=97.49 E-value=0.0014 Score=52.96 Aligned_cols=116 Identities=16% Similarity=0.119 Sum_probs=79.1
Q ss_pred HHHHHHhhhhhccCCCCchhHHHHHHHHHHHHHH----HHhcccCCCCCCchH--HHHHH-HHHHHhhHHHHHHHhhCCC
Q 018484 36 LVNGICEEYVYNRLQFSYGWYFTFVQGFVYLVLI----YLQGFTTKQMVNPWK--TYVKL-SAVLMGSHGLTKGSLAFLN 108 (355)
Q Consensus 36 ~~~~~~~k~i~~~~~f~~p~~lt~~Q~~~~~~~~----~~~~~~~~~~~~~~~--~~~~~-s~~~~~~~~l~~~sL~~~s 108 (355)
.+..++-|--.++. .|.+-|++..++..+++ ...+..+.......| .|+.+ ++....+..+.+.|++.-+
T Consensus 16 ~L~~iF~KIGl~~v---dp~~At~IRtiVi~~~l~~v~~~~g~~~~~~~~~~k~~lflilSGla~glswl~Yf~ALk~G~ 92 (140)
T COG2510 16 GLTPIFAKIGLEGV---DPDFATTIRTIVILIFLLIVLLVTGNWQAGGEIGPKSWLFLILSGLAGGLSWLLYFRALKKGK 92 (140)
T ss_pred HHHHHHHHHhcccc---CccHHHHHHHHHHHHHHHHHHHhcCceecccccCcceehhhhHHHHHHHHHHHHHHHHHhcCC
Confidence 33445555544322 35666777666543322 112211111112222 34444 4555678889999999999
Q ss_pred hhHHHHHhhcchHHHHHHHhhhcCCccccChhHHHHHHHHHHHHHHHh
Q 018484 109 YPAQIMFKSTKVLPVMIMGAFIPGLRRKYPAHEYVAALLLVFGLILFT 156 (355)
Q Consensus 109 ~~~~~v~ks~~pi~v~l~~~l~~gl~~~~s~~~~~~l~li~~Gv~l~~ 156 (355)
.|-..=+-.++|+++.++++++ ++||++..++++++++++|+++.+
T Consensus 93 as~VvPldk~svvl~~lls~lf--L~E~ls~~~~iG~~LI~~Gailvs 138 (140)
T COG2510 93 ASRVVPLDKTSVVLAVLLSILF--LGERLSLPTWIGIVLIVIGAILVS 138 (140)
T ss_pred cceEEEcccccHHHHHHHHHHH--hcCCCCHHHHHHHHHHHhCeeeEe
Confidence 9988888899999999999999 999999999999999999988764
No 59
>PRK10452 multidrug efflux system protein MdtJ; Provisional
Probab=97.47 E-value=0.0015 Score=53.00 Aligned_cols=63 Identities=16% Similarity=0.168 Sum_probs=50.1
Q ss_pred HHHHHHHHHHHhhchH-HHHHHHhHHHHHHHHHHHHHhCCCcccchhhhHHHHHHHHHHHhccC
Q 018484 251 VGQVSVLSLIALFGAA-TTAMITTARKAVTLFLSYLIFTKPLTEQHGTGLLLIAMGIILKMLPE 313 (355)
Q Consensus 251 l~~~~~~~~i~~~sa~-t~svv~~~k~v~~i~ls~l~f~~~~t~~~~iG~~lv~~Gv~ly~~~k 313 (355)
++.++....+++.+-. .+++..-+.-+.+.+.|+++|||++|+.+++|++++++|++.-....
T Consensus 42 ~sf~~ls~al~~lplsiAYavw~GiG~v~~~~ig~~~f~E~~s~~~~~gi~lIi~GVi~l~l~~ 105 (120)
T PRK10452 42 LSYIFLSFAVKKIALGVAYALWEGIGILFITLFSVLLFDESLSLMKIAGLTTLVAGIVLIKSGT 105 (120)
T ss_pred HHHHHHHHHHhhCCchhHHHHHHHHHHHHHHHHHHHHhCCCCCHHHHHHHHHHHHHHHHhhcCC
Confidence 4556666677776643 46666667888999999999999999999999999999998765433
No 60
>PF06027 DUF914: Eukaryotic protein of unknown function (DUF914); InterPro: IPR009262 This family consists of several hypothetical proteins of unknown function. Some of the sequences in this family are annotated as putative membrane proteins.
Probab=97.43 E-value=0.004 Score=59.50 Aligned_cols=76 Identities=12% Similarity=0.267 Sum_probs=68.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHhhchHHHHHHHhHHHHHHHHHHHHHhCCCcccchhhhHHHHHHHHHHHhccCCC
Q 018484 239 YGVLVFEAMATFVGQVSVLSLIALFGAATTAMITTARKAVTLFLSYLIFTKPLTEQHGTGLLLIAMGIILKMLPENK 315 (355)
Q Consensus 239 ~~~l~l~~~~~~l~~~~~~~~i~~~sa~t~svv~~~k~v~~i~ls~l~f~~~~t~~~~iG~~lv~~Gv~ly~~~k~~ 315 (355)
|.++++ +++=+.+|++.....++++.+..++......+++.++|+++++++.++.|++|+.++++|+.+-......
T Consensus 80 w~y~ll-a~~Dv~aN~~~v~a~~yTsvtS~~lL~~~~i~~~~~LS~~fL~~ry~~~~~~gv~i~i~Gv~lv~~sD~~ 155 (334)
T PF06027_consen 80 WKYFLL-ALLDVEANYLVVLAYQYTSVTSVQLLDCTSIPFVMILSFIFLKRRYSWFHILGVLICIAGVVLVVVSDVL 155 (334)
T ss_pred HHHHHH-HHHHHHHHHHHHHHhhcccHhHHHhhhhhhhHHHHHHHHHHHHhhhhHHHHHHHHHHHhhhhheeeeccc
Confidence 455555 5777899999999999999999999999999999999999999999999999999999999987776544
No 61
>PRK11689 aromatic amino acid exporter; Provisional
Probab=97.42 E-value=0.0041 Score=58.52 Aligned_cols=68 Identities=10% Similarity=-0.007 Sum_probs=60.5
Q ss_pred HHHHHHhhHHHHHHHhhCCChhHHHHHhhcchHHHHHHHhhhcCCccccChhHHHHHHHHHHHHHHHhcc
Q 018484 89 LSAVLMGSHGLTKGSLAFLNYPAQIMFKSTKVLPVMIMGAFIPGLRRKYPAHEYVAALLLVFGLILFTMA 158 (355)
Q Consensus 89 ~s~~~~~~~~l~~~sL~~~s~~~~~v~ks~~pi~v~l~~~l~~gl~~~~s~~~~~~l~li~~Gv~l~~~~ 158 (355)
.++....+..++++++++.+.+..+++-...|++.+++++++ ++|++++.++++.++++.|+.+....
T Consensus 221 ~~~~t~~~~~l~~~al~~~~a~~~s~~~~l~Pv~a~i~~~~~--lgE~~~~~~~iG~~lI~~gv~~~~~~ 288 (295)
T PRK11689 221 AAAAMGFGYAAWNVGILHGNMTLLATASYFTPVLSAALAALL--LSTPLSFSFWQGVAMVTAGSLLCWLA 288 (295)
T ss_pred HHHHHHHHHHHHHHHHHccCHHHHHHHHHhHHHHHHHHHHHH--hCCCCcHHHHHHHHHHHHhHHHHhhh
Confidence 344445678889999999999999999999999999999999 89999999999999999999887543
No 62
>PRK10532 threonine and homoserine efflux system; Provisional
Probab=97.40 E-value=0.0074 Score=56.71 Aligned_cols=69 Identities=12% Similarity=0.017 Sum_probs=61.0
Q ss_pred HHHHH-HHhhHHHHHHHhhCCChhHHHHHhhcchHHHHHHHhhhcCCccccChhHHHHHHHHHHHHHHHhcc
Q 018484 88 KLSAV-LMGSHGLTKGSLAFLNYPAQIMFKSTKVLPVMIMGAFIPGLRRKYPAHEYVAALLLVFGLILFTMA 158 (355)
Q Consensus 88 ~~s~~-~~~~~~l~~~sL~~~s~~~~~v~ks~~pi~v~l~~~l~~gl~~~~s~~~~~~l~li~~Gv~l~~~~ 158 (355)
.++++ ..+...+.++++++++.+...++-...|++..++++++ ++|++++.++++..++++|++.....
T Consensus 213 ~lgv~~t~~~~~l~~~~~~~~~a~~as~~~~l~Pv~a~l~~~l~--lgE~~~~~~~iG~~lIl~~~~~~~~~ 282 (293)
T PRK10532 213 AVAILSTALPYSLEMIALTRLPTRTFGTLMSMEPALAAVSGMIF--LGETLTLIQWLALGAIIAASMGSTLT 282 (293)
T ss_pred HHHHHHHHHHHHHHHHHHHhcChhHHHHHHHhHHHHHHHHHHHH--hCCCCcHHHHHHHHHHHHHHHHHHhc
Confidence 34443 35677789999999999999999999999999999999 89999999999999999998887554
No 63
>PRK11453 O-acetylserine/cysteine export protein; Provisional
Probab=97.40 E-value=0.0068 Score=57.10 Aligned_cols=123 Identities=12% Similarity=0.109 Sum_probs=82.1
Q ss_pred HHHHHHHHHHHhHHHHHHHHHhhCCCCChhhHHHHHHHHhHHHHHHHHHhhchHHHHHHHHhhhhHHHHHHHHHHHHHHH
Q 018484 172 LMISGALVMDSFLGNLQEVIFTVNPDTTQMEMLFCSTVVGLPFLLVPMILTGELVRAWNSCSQHLYVYGVLVFEAMATFV 251 (355)
Q Consensus 172 ~l~l~s~~~~a~~~v~~~~l~~~~~~~~~~~l~~~~~l~~~~~ll~~~~~~ge~~~~~~~~~~~~~~~~~l~l~~~~~~l 251 (355)
++.+++.++++...+..|...++ .++....++-..++.+.+++.. ..+ +.+ +..+...++....
T Consensus 7 l~~l~~~~~Wg~~~~~~k~~~~~---~~p~~~~~~R~~~a~~~l~~~~--~~~---------~~~--~~~~~~~g~~~~~ 70 (299)
T PRK11453 7 VLALLVVVVWGLNFVVIKVGLHN---MPPLMLAGLRFMLVAFPAIFFV--ARP---------KVP--LNLLLGYGLTISF 70 (299)
T ss_pred HHHHHHHHHHhhhHHHHHHHHhc---CCHHHHHHHHHHHHHHHHHHHh--cCC---------CCc--hHHHHHHHHHHHH
Confidence 44677788899888888765543 4677777766655543333221 111 001 1112222332223
Q ss_pred HH-HHHHHHHHh-hchHHHHHHHhHHHHHHHHHHHHHhCCCcccchhhhHHHHHHHHHHHh
Q 018484 252 GQ-VSVLSLIAL-FGAATTAMITTARKAVTLFLSYLIFTKPLTEQHGTGLLLIAMGIILKM 310 (355)
Q Consensus 252 ~~-~~~~~~i~~-~sa~t~svv~~~k~v~~i~ls~l~f~~~~t~~~~iG~~lv~~Gv~ly~ 310 (355)
++ .+.+...++ .++...+++..+.|+++.++++++++|+++..+++|+++.++|+.+-.
T Consensus 71 ~~~~~~~~~~~~~~~a~~a~~l~~~~pi~~~ll~~~~l~e~~~~~~~~~~~l~~~Gv~ll~ 131 (299)
T PRK11453 71 GQFAFLFCAINFGMPAGLASLVLQAQAFFTIVLGAFTFGERLQGKQLAGIALAIFGVLVLI 131 (299)
T ss_pred HHHHHHHHHHHhcCCHHHHHHHHHhHHHHHHHHHHHHhcCcCcHHHHHHHHHHHHhHHHhc
Confidence 33 345566666 577788888999999999999999999999999999999999998765
No 64
>PF07857 DUF1632: CEO family (DUF1632); InterPro: IPR012435 These sequences are found in hypothetical eukaryotic proteins of unknown function. The region concerned is approximately 280 residues long.
Probab=97.39 E-value=0.00062 Score=62.35 Aligned_cols=83 Identities=11% Similarity=0.102 Sum_probs=56.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHhhc-hHHHHHHHhHHHHHHHHHHHH-HhCCC-----cccchhhhHHHHHHHHHHHhc
Q 018484 239 YGVLVFEAMATFVGQVSVLSLIALFG-AATTAMITTARKAVTLFLSYL-IFTKP-----LTEQHGTGLLLIAMGIILKML 311 (355)
Q Consensus 239 ~~~l~l~~~~~~l~~~~~~~~i~~~s-a~t~svv~~~k~v~~i~ls~l-~f~~~-----~t~~~~iG~~lv~~Gv~ly~~ 311 (355)
+.+.++++..-..||.+..-+++..| ++-..+-++..-+.....|-+ +||.+ -.+++++|++++++|..+|.+
T Consensus 55 ~p~amlgG~lW~~gN~~~vpii~~iGLglg~liW~s~n~l~Gw~~grfGlFg~~~~~~~~~~Ln~~G~~l~~~~~~~f~f 134 (254)
T PF07857_consen 55 YPWAMLGGALWATGNILVVPIIKTIGLGLGMLIWGSVNCLTGWASGRFGLFGLDPQVPSSPWLNYIGVALVLVSGIIFSF 134 (254)
T ss_pred eeHHHhhhhhhhcCceeehhHhhhhhhHHHHHHHHHHHHHHHHHHhhceeccccccccchhHHHHHHHHHHHHHHHheee
Confidence 33445556666678887777788777 344555566555566665544 56532 346899999999999999999
Q ss_pred cCCCCCCCCC
Q 018484 312 PENKAPANNR 321 (355)
Q Consensus 312 ~k~~~~~~~~ 321 (355)
.|..++++++
T Consensus 135 ik~~~~~~~~ 144 (254)
T PF07857_consen 135 IKSEEKEPKK 144 (254)
T ss_pred ecCCCCCccc
Confidence 8877654433
No 65
>TIGR00776 RhaT RhaT L-rhamnose-proton symporter family protein. These proteins are members of the L-Rhamnose Symporter (RhaT) Family (TC 2.A.7). This family includes two characterized members, both of which function as L-rhamnose:H+ symporters and have 10 GES predicted transmembrane domains.
Probab=97.33 E-value=0.0038 Score=58.69 Aligned_cols=131 Identities=16% Similarity=0.119 Sum_probs=87.9
Q ss_pred HHHHHHHHHHHHHhHHHHHHHHHhhCCCCChhhHHHHHHHHhHHHHHHHHHhhchHHHHHHHHhhhhHHHHHHHHHHHHH
Q 018484 170 GVLMISGALVMDSFLGNLQEVIFTVNPDTTQMEMLFCSTVVGLPFLLVPMILTGELVRAWNSCSQHLYVYGVLVFEAMAT 249 (355)
Q Consensus 170 G~~l~l~s~~~~a~~~v~~~~l~~~~~~~~~~~l~~~~~l~~~~~ll~~~~~~ge~~~~~~~~~~~~~~~~~l~l~~~~~ 249 (355)
|++++++++++++...+..|++. + .++.+.+ . ..++..++........+. . .+.+..+..-+++++.-
T Consensus 2 ~~l~~lia~~~wGs~g~~~k~~~---g-~~~~~~~-~-~~~g~l~~~~~~~~~~~~-~-----~~~~~~~~~g~l~G~~w 69 (290)
T TIGR00776 2 DILIALIPALFWGSFVLINVKIG---G-GPYSQTL-G-TTFGALILSIAIAIFVLP-E-----FWALSIFLVGLLSGAFW 69 (290)
T ss_pred chHHHHHHHHHHhhhHHHHhccC---C-CHHHHHH-H-HHHHHHHHHHHHHHHhCC-c-----ccccHHHHHHHHHHHHH
Confidence 67888999999999888877654 2 1233333 1 222332222111111110 0 01133333344445556
Q ss_pred HHHHHHHHHHHHhhchHHHHHHHh-HHHHHHHHHHHHHhCCCcccch----hhhHHHHHHHHHHHhcc
Q 018484 250 FVGQVSVLSLIALFGAATTAMITT-ARKAVTLFLSYLIFTKPLTEQH----GTGLLLIAMGIILKMLP 312 (355)
Q Consensus 250 ~l~~~~~~~~i~~~sa~t~svv~~-~k~v~~i~ls~l~f~~~~t~~~----~iG~~lv~~Gv~ly~~~ 312 (355)
..+|++++..+++.+....-.+.+ +..++..+++.++|||..+..+ ++|+++++.|+++....
T Consensus 70 ~ig~~~~~~ai~~~gva~a~~i~~~~~~v~~~l~~~~~f~e~~t~~~~~~~~~g~~l~l~G~~l~~~~ 137 (290)
T TIGR00776 70 ALGQINQFKSMRYMGVSKTMPISTGFQLVGGTLFGVIVFGEWSTSIQTLLGLLALILIIIGVYLTSRS 137 (290)
T ss_pred HhhhhhHHHHHHHHhHHHHhHHHHHHHHHHHHHHHHHHhhhccchHHHHHHHHHHHHHHHhHheEEec
Confidence 688999999999999888866666 7778999999999999999999 99999999999887544
No 66
>PRK02971 4-amino-4-deoxy-L-arabinose-phosphoundecaprenol flippase subunit ArnF; Provisional
Probab=97.20 E-value=0.0021 Score=52.88 Aligned_cols=71 Identities=14% Similarity=0.119 Sum_probs=59.8
Q ss_pred HHHHH-HHHHhhHHHHHHHhhCCChhHHHHHhhcchHHHHHHHhh--hcCCccccChhHHHHHHHHHHHHHHHhcc
Q 018484 86 YVKLS-AVLMGSHGLTKGSLAFLNYPAQIMFKSTKVLPVMIMGAF--IPGLRRKYPAHEYVAALLLVFGLILFTMA 158 (355)
Q Consensus 86 ~~~~s-~~~~~~~~l~~~sL~~~s~~~~~v~ks~~pi~v~l~~~l--~~gl~~~~s~~~~~~l~li~~Gv~l~~~~ 158 (355)
++..+ +++.++..+++.+++..|.+.+--+-+..++.+++.++. + ++|+.++.+++++.++++|+.+....
T Consensus 50 ~i~lgl~~~~la~~~w~~aL~~~~ls~Ayp~~sl~~~~v~~~~~~~~~--~~E~ls~~~~iGi~lIi~GV~lv~~~ 123 (129)
T PRK02971 50 AVLLGLAGYALSMLCWLKALRYLPLSRAYPLLSLSYALVYLAAMLLPW--FNETFSLKKTLGVACIMLGVWLINLP 123 (129)
T ss_pred HHHHHHHHHHHHHHHHHHHHHhCCcHHHHHHHHHHHHHHHHHHHHHHH--cCCCCCHHHHHHHHHHHHHHHHhccC
Confidence 34444 467888999999999999999888878877778777774 6 79999999999999999999998654
No 67
>COG0697 RhaT Permeases of the drug/metabolite transporter (DMT) superfamily [Carbohydrate transport and metabolism / Amino acid transport and metabolism / General function prediction only]
Probab=97.14 E-value=0.024 Score=52.23 Aligned_cols=143 Identities=14% Similarity=0.058 Sum_probs=90.6
Q ss_pred hhhHHHHHHHHHHHHHhHHHHHHHHHhhCCCCChhhHHHHHHHHhHHHHHHHHHhhchHHHHHHHHhhhhHHHHHHHHHH
Q 018484 167 SLIGVLMISGALVMDSFLGNLQEVIFTVNPDTTQMEMLFCSTVVGLPFLLVPMILTGELVRAWNSCSQHLYVYGVLVFEA 246 (355)
Q Consensus 167 ~~~G~~l~l~s~~~~a~~~v~~~~l~~~~~~~~~~~l~~~~~l~~~~~ll~~~~~~ge~~~~~~~~~~~~~~~~~l~l~~ 246 (355)
...+....+.+.+.++......+..... ..+.....++......+...+. ...+. ..........+..++...
T Consensus 5 ~~~~~~~~l~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~--~~~~~---~~~~~~~~~~~~~~~~~~ 77 (292)
T COG0697 5 LLLGLLALLLWGLLWGLSFIALKLAVES--LDPFLFAAALRFLIAALLLLPL--LLLEP---RGLRPALRPWLLLLLLAL 77 (292)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhcc--cCChHHHHHHHHHHHHHHHHHH--HHhhc---ccccccccchHHHHHHHH
Confidence 3456666666666777666555544432 1233444443444333331111 10000 000001111223444455
Q ss_pred HHHHHHHHHHHHHHHhhchHHHHHHHhHHHHHHHHHHH-HHhCCCcccchhhhHHHHHHHHHHHhccCCCC
Q 018484 247 MATFVGQVSVLSLIALFGAATTAMITTARKAVTLFLSY-LIFTKPLTEQHGTGLLLIAMGIILKMLPENKA 316 (355)
Q Consensus 247 ~~~~l~~~~~~~~i~~~sa~t~svv~~~k~v~~i~ls~-l~f~~~~t~~~~iG~~lv~~Gv~ly~~~k~~~ 316 (355)
+.....+.+++..++++++...+++....|+++.+++. ++++|+++..+++|+.+.+.|+.+-......+
T Consensus 78 ~~~~~~~~~~~~~~~~~~~~~~~~l~~~~p~~~~~~~~~~~~~e~~~~~~~~~~~~~~~Gv~lv~~~~~~~ 148 (292)
T COG0697 78 LGLALPFLLLFLALKYTSASVASLIIGLLPLFTALLAVLLLLGERLSLLQILGILLALAGVLLILLGGGGG 148 (292)
T ss_pred HHHHHHHHHHHHHHhhcchHHHHHHHHHHHHHHHHHHHHHHccCCCcHHHHHHHHHHHHhHHheecCCCcc
Confidence 66667778889999999999999999999999999997 66699999999999999999999877655443
No 68
>PRK13499 rhamnose-proton symporter; Provisional
Probab=97.12 E-value=0.013 Score=56.09 Aligned_cols=138 Identities=12% Similarity=0.043 Sum_probs=89.2
Q ss_pred hhhHHHHHHHHHHHHHhHHHHHHHHHhhCCCCChhhHHHHHHHHhHH--HHHH---HHHhhchHHHHHHHHh-hhhHHHH
Q 018484 167 SLIGVLMISGALVMDSFLGNLQEVIFTVNPDTTQMEMLFCSTVVGLP--FLLV---PMILTGELVRAWNSCS-QHLYVYG 240 (355)
Q Consensus 167 ~~~G~~l~l~s~~~~a~~~v~~~~l~~~~~~~~~~~l~~~~~l~~~~--~ll~---~~~~~ge~~~~~~~~~-~~~~~~~ 240 (355)
...|+++.+++.+|++...+-+|+ .++. .+|.. |- ..+.. ++.| ..+..+ +..+... .++..+.
T Consensus 5 ~~~G~~~~~i~~~~~GS~~~p~K~-~k~w----~wE~~-W~-v~gi~~wl~~~~~~g~~~~~---~f~~~~~~~~~~~~~ 74 (345)
T PRK13499 5 IILGIIWHLIGGASSGSFYAPFKK-VKKW----SWETM-WS-VGGIFSWLILPWLIAALLLP---DFWAYYSSFSGSTLL 74 (345)
T ss_pred hHHHHHHHHHHHHHhhcccccccc-cCCC----chhHH-HH-HHHHHHHHHHHHHHHHHHhh---hHHHHHHhcCHHHHH
Confidence 478999999999999987777765 3332 34433 22 11111 1111 112222 2222222 2344555
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhhchH-HHHHHHhHHHHHHHHHHHHHhCCCc---c----cchhhhHHHHHHHHHHHhcc
Q 018484 241 VLVFEAMATFVGQVSVLSLIALFGAA-TTAMITTARKAVTLFLSYLIFTKPL---T----EQHGTGLLLIAMGIILKMLP 312 (355)
Q Consensus 241 ~l~l~~~~~~l~~~~~~~~i~~~sa~-t~svv~~~k~v~~i~ls~l~f~~~~---t----~~~~iG~~lv~~Gv~ly~~~ 312 (355)
.-+++++.-.+||+..+..+++.|-. +..+..-+.-+...+++.+++||-- + ....+|++++++|+.+.+++
T Consensus 75 ~~~l~G~~W~iG~i~~~~s~~~iGvS~~~pIs~Gl~lv~gtL~~~i~~gew~~~~~t~~g~~~~~gv~liliGi~l~s~A 154 (345)
T PRK13499 75 PVFLFGALWGIGGITYGLTMRYLGMSLGIGIAIGITLIVGTLMPPIINGNFDVLLATNGGRMTLLGVLVALIGVAIVGRA 154 (345)
T ss_pred HHHHHHHHHHhhhhhHHHHHHHhhhhhhhhHHHHHHHHHHHHHHHHHccccccccccchHHHHHHHHHHHHHHHHHHHHh
Confidence 56666777779999999999988844 4566666777888899999998532 2 24778999999999999885
Q ss_pred CC
Q 018484 313 EN 314 (355)
Q Consensus 313 k~ 314 (355)
-.
T Consensus 155 g~ 156 (345)
T PRK13499 155 GQ 156 (345)
T ss_pred hh
Confidence 43
No 69
>PRK10452 multidrug efflux system protein MdtJ; Provisional
Probab=97.03 E-value=0.0039 Score=50.52 Aligned_cols=72 Identities=8% Similarity=0.172 Sum_probs=60.9
Q ss_pred HHHHHHHHHhhHHHHHHHhhCCChhHH-HHHhhcchHHHHHHHhhhcCCccccChhHHHHHHHHHHHHHHHhccC
Q 018484 86 YVKLSAVLMGSHGLTKGSLAFLNYPAQ-IMFKSTKVLPVMIMGAFIPGLRRKYPAHEYVAALLLVFGLILFTMAD 159 (355)
Q Consensus 86 ~~~~s~~~~~~~~l~~~sL~~~s~~~~-~v~ks~~pi~v~l~~~l~~gl~~~~s~~~~~~l~li~~Gv~l~~~~~ 159 (355)
++..-+++..++++...+++++|.+.+ .+......+.+.+++.++ ++|++++.+++++.++++|++..-..+
T Consensus 33 ~~~~i~~~~~sf~~ls~al~~lplsiAYavw~GiG~v~~~~ig~~~--f~E~~s~~~~~gi~lIi~GVi~l~l~~ 105 (120)
T PRK10452 33 FILMLVMISLSYIFLSFAVKKIALGVAYALWEGIGILFITLFSVLL--FDESLSLMKIAGLTTLVAGIVLIKSGT 105 (120)
T ss_pred HHHHHHHHHHHHHHHHHHHhhCCchhHHHHHHHHHHHHHHHHHHHH--hCCCCCHHHHHHHHHHHHHHHHhhcCC
Confidence 445566778899999999999999866 555667889999999999 899999999999999999998875543
No 70
>PRK09541 emrE multidrug efflux protein; Reviewed
Probab=96.88 E-value=0.014 Score=46.56 Aligned_cols=63 Identities=17% Similarity=0.209 Sum_probs=50.2
Q ss_pred HHHHHHHHHHHhhchH-HHHHHHhHHHHHHHHHHHHHhCCCcccchhhhHHHHHHHHHHHhccC
Q 018484 251 VGQVSVLSLIALFGAA-TTAMITTARKAVTLFLSYLIFTKPLTEQHGTGLLLIAMGIILKMLPE 313 (355)
Q Consensus 251 l~~~~~~~~i~~~sa~-t~svv~~~k~v~~i~ls~l~f~~~~t~~~~iG~~lv~~Gv~ly~~~k 313 (355)
++..+....+++.+-. .+++..-+..+.+.+.|+++|||++|+.+++|++++++|++.-...+
T Consensus 42 ~sf~~l~~al~~ipl~iAYavw~GlG~v~~~l~g~~~f~e~~~~~~~~gi~lIi~GVi~l~l~~ 105 (110)
T PRK09541 42 ASFWLLAQTLAYIPTGIAYAIWSGVGIVLISLLSWGFFGQRLDLPAIIGMMLICAGVLVINLLS 105 (110)
T ss_pred HHHHHHHHHHhhCCchhHHHHHHHHHHHHHHHHHHHHhCCCCCHHHHHHHHHHHHHHHHHhcCC
Confidence 4445555667776643 46677777888999999999999999999999999999999876544
No 71
>COG2076 EmrE Membrane transporters of cations and cationic drugs [Inorganic ion transport and metabolism]
Probab=96.87 E-value=0.018 Score=45.35 Aligned_cols=70 Identities=10% Similarity=0.123 Sum_probs=59.0
Q ss_pred HHHHHHHHHhhHHHHHHHhhCCChhHH-HHHhhcchHHHHHHHhhhcCCccccChhHHHHHHHHHHHHHHHhc
Q 018484 86 YVKLSAVLMGSHGLTKGSLAFLNYPAQ-IMFKSTKVLPVMIMGAFIPGLRRKYPAHEYVAALLLVFGLILFTM 157 (355)
Q Consensus 86 ~~~~s~~~~~~~~l~~~sL~~~s~~~~-~v~ks~~pi~v~l~~~l~~gl~~~~s~~~~~~l~li~~Gv~l~~~ 157 (355)
.+..-+++..++++-..|++.+|++++ .+---.-.+-+.+.++++ |+|+.+..+++++.++++|++..-.
T Consensus 33 ~il~~v~~~~sf~~Ls~alk~ipvgvAYAiW~GiG~v~~~l~g~~~--f~E~l~~~~~~gl~LiiaGvi~Lk~ 103 (106)
T COG2076 33 SILTIVGYGLSFYLLSLALKTIPLGVAYAIWTGIGIVGTALVGVLL--FGESLSLIKLLGLALILAGVIGLKL 103 (106)
T ss_pred HHHHHHHHHHHHHHHHHHHhhCchHHHHHHHHHHHHHHHHHHHHHh--cCCcCCHHHHHHHHHHHHHHHHhhh
Confidence 344556777888888999999999865 666667788899999999 8999999999999999999987643
No 72
>PF04657 DUF606: Protein of unknown function, DUF606; InterPro: IPR006750 This family contains uncharacterised bacterial proteins.
Probab=96.80 E-value=0.054 Score=45.10 Aligned_cols=130 Identities=22% Similarity=0.289 Sum_probs=84.7
Q ss_pred HHHHHHHHHHHhHHHHHHHHHhhCCCCChhhHHHHHHHHhHHHHHHHHHhhchHHHHHHHHhhhhHHHHHHHHHHHHHHH
Q 018484 172 LMISGALVMDSFLGNLQEVIFTVNPDTTQMEMLFCSTVVGLPFLLVPMILTGELVRAWNSCSQHLYVYGVLVFEAMATFV 251 (355)
Q Consensus 172 ~l~l~s~~~~a~~~v~~~~l~~~~~~~~~~~l~~~~~l~~~~~ll~~~~~~ge~~~~~~~~~~~~~~~~~l~l~~~~~~l 251 (355)
++.+++-.+.+++..+.-++.++.+ +++...+.+...++..+....++.++. ......+.|+ +..+.++.+..
T Consensus 4 lla~~aG~~i~~q~~~N~~L~~~~g--s~~~as~i~~~~G~i~~~i~~~~~~~~--~~~~~~~~p~---w~~lGG~lG~~ 76 (138)
T PF04657_consen 4 LLALLAGALIALQAAFNGQLGKALG--SPLVASFISFGVGFILLLIILLITGRP--SLASLSSVPW---WAYLGGLLGVF 76 (138)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhC--ccHHHHHHHHHHHHHHHHHHHHHhccc--ccchhccCCh---HHhccHHHHHH
Confidence 4455555566666666666655532 467777777777777766555555442 1221222232 33446778777
Q ss_pred HHHHHHHHHHhhchHHHHHHHhHHH-HHHHHHHHH-HhC---CCcccchhhhHHHHHHHHHH
Q 018484 252 GQVSVLSLIALFGAATTAMITTARK-AVTLFLSYL-IFT---KPLTEQHGTGLLLIAMGIIL 308 (355)
Q Consensus 252 ~~~~~~~~i~~~sa~t~svv~~~k~-v~~i~ls~l-~f~---~~~t~~~~iG~~lv~~Gv~l 308 (355)
.-.+....+++.|+..+......-. +.+++++.+ +|+ +++++.+.+|+.+++.|+.+
T Consensus 77 ~V~~~~~~vp~lG~~~~~~l~~~GQl~~sl~iD~fG~fg~~~~~~~~~r~lG~~l~i~Gv~L 138 (138)
T PF04657_consen 77 FVLSNIILVPRLGAALTTILIVAGQLIASLLIDHFGLFGAPKRPFSLRRILGLALMIAGVIL 138 (138)
T ss_pred HHHHHHHHhhhhhHHHHHHHHHHHHHHHHHHHHHccccCCCCCCCCHHHHHHHHHHHHHHhC
Confidence 7788888999999988776655544 445556665 343 68999999999999999863
No 73
>KOG2922 consensus Uncharacterized conserved protein [Function unknown]
Probab=96.72 E-value=0.015 Score=54.35 Aligned_cols=217 Identities=14% Similarity=0.139 Sum_probs=118.6
Q ss_pred HHHHH-HHHhhHHHHHHHhhCCChhHHHHHhhcchHHHHHHHhhhcCCccccChhHHHHHHHHHHHHHHHhccCCCCCC-
Q 018484 87 VKLSA-VLMGSHGLTKGSLAFLNYPAQIMFKSTKVLPVMIMGAFIPGLRRKYPAHEYVAALLLVFGLILFTMADAQTSP- 164 (355)
Q Consensus 87 ~~~s~-~~~~~~~l~~~sL~~~s~~~~~v~ks~~pi~v~l~~~l~~gl~~~~s~~~~~~l~li~~Gv~l~~~~~~~~~~- 164 (355)
++.|. .+..+-..++.|+.+.|.+..+-+-+.+.+..++++..+ ++|+.++...++.+++++|-.+........+.
T Consensus 67 Ww~G~ltm~vGei~NFaAYaFAPasLVtPLGAlsvi~saila~~~--L~Ekl~~~g~lGc~l~v~Gst~iV~haP~e~~i 144 (335)
T KOG2922|consen 67 WWAGMLTMIVGEIANFAAYAFAPASLVTPLGALSVIISAILASFF--LKEKLNLLGILGCVLCVVGSTTIVIHAPKEQEI 144 (335)
T ss_pred HHHHHHHHHHHhHhhHHHHhhchHhhhccchhHHHHHHHHHHHHH--HHHHHHHhhhhheeEEecccEEEEEecCccccc
Confidence 34554 456677789999999999999999999999999999999 89999999999999999997766544322211
Q ss_pred -----------CchhhHHHHHHHHHHHHHhHHHHHHHHHhhCCCCChhhHHHHHHHHhHHHHHHHHH--hhchHHH-HHH
Q 018484 165 -----------NFSLIGVLMISGALVMDSFLGNLQEVIFTVNPDTTQMEMLFCSTVVGLPFLLVPMI--LTGELVR-AWN 230 (355)
Q Consensus 165 -----------~~~~~G~~l~l~s~~~~a~~~v~~~~l~~~~~~~~~~~l~~~~~l~~~~~ll~~~~--~~ge~~~-~~~ 230 (355)
+...+.+....+-.++ ...+ ....+++ +..++.|..+.++.-.+-.+. -.|...+ ..+
T Consensus 145 ~t~~el~~~~~~~~Fliy~~~iil~~~---il~~--~~~p~~g---~tnilvyi~i~s~iGS~tV~svKalg~aiklt~~ 216 (335)
T KOG2922|consen 145 ESVEEVWELATEPGFLVYVIIIILIVL---ILIF--FYAPRYG---QTNILVYIGICSLIGSLTVMSVKALGIAIKLTFS 216 (335)
T ss_pred ccHHHHHHHhcCccHHHHHHHHHHHHH---HHhe--eeccccc---ccceeehhhHhhhhcceeeeeHHHHHHHHHHHhc
Confidence 1111222221111111 0001 1111221 223445554433321100000 0011110 000
Q ss_pred --HHhhhhHHHHHHHHHHHHHHHHHH-HHHHHHHhhchHHHHHHH-hHHHHHHHHHHHHHhCC--Ccccc----hhhhHH
Q 018484 231 --SCSQHLYVYGVLVFEAMATFVGQV-SVLSLIALFGAATTAMIT-TARKAVTLFLSYLIFTK--PLTEQ----HGTGLL 300 (355)
Q Consensus 231 --~~~~~~~~~~~l~l~~~~~~l~~~-~~~~~i~~~sa~t~svv~-~~k~v~~i~ls~l~f~~--~~t~~----~~iG~~ 300 (355)
.-..+|..|..++....+ ..-|. ..+..++.+++...+.+. ..-..++++.|.++|+| ..+.. ...|..
T Consensus 217 g~~ql~~~~ty~~~l~~~~~-~~~Q~~yLNkAL~~fntslV~PiyyV~fTtl~I~as~I~Fkew~~~~~~~i~~~~~Gf~ 295 (335)
T KOG2922|consen 217 GNNQLFYPLTWIFLLVVATC-VSTQMNYLNKALDLFNTSIVSPIYYVMFTTLVILASAILFKEWSGQDALDIAGELCGFV 295 (335)
T ss_pred CCcccccHHHHHHHHHHHHH-HHHHHHHHHHHHHhhhhhhcchhHHHHHHHHHHHHHHHHHHHhcCCcHHHHHHHHHhHH
Confidence 001234334333222222 23333 345677777766655444 44577888999999986 44444 456777
Q ss_pred HHHHHHHHHhccCC
Q 018484 301 LIAMGIILKMLPEN 314 (355)
Q Consensus 301 lv~~Gv~ly~~~k~ 314 (355)
.++.|+++-...|.
T Consensus 296 ti~~G~flL~~~kd 309 (335)
T KOG2922|consen 296 TIFLGIFLLHRTKD 309 (335)
T ss_pred HhhheeeEeeeecc
Confidence 77777776543333
No 74
>PRK11431 multidrug efflux system protein; Provisional
Probab=96.69 E-value=0.013 Score=46.44 Aligned_cols=68 Identities=15% Similarity=0.192 Sum_probs=57.9
Q ss_pred HHHHHHHHhhHHHHHHHhhCCChhHH-HHHhhcchHHHHHHHhhhcCCccccChhHHHHHHHHHHHHHHHh
Q 018484 87 VKLSAVLMGSHGLTKGSLAFLNYPAQ-IMFKSTKVLPVMIMGAFIPGLRRKYPAHEYVAALLLVFGLILFT 156 (355)
Q Consensus 87 ~~~s~~~~~~~~l~~~sL~~~s~~~~-~v~ks~~pi~v~l~~~l~~gl~~~~s~~~~~~l~li~~Gv~l~~ 156 (355)
+..-+++..++++-..+++.+|.+++ .+--....+.+.+++.++ ++|+.++.+++++.++++|++..-
T Consensus 33 ~~~i~~~~~sf~~Ls~al~~ip~gvaYAvW~GiG~v~~~lig~~~--f~e~~~~~~~~gi~lIi~GVv~l~ 101 (105)
T PRK11431 33 IITVTAMIVSMALLAWAMKSLPVGTAYAVWTGIGAVGAAITGIVL--LGESASPARLLSLALIVAGIIGLK 101 (105)
T ss_pred HHHHHHHHHHHHHHHHHHhhCCcHhHHHHHHHHHHHHHHHHHHHH--hCCCCCHHHHHHHHHHHHHHHhhh
Confidence 34456778888889999999999865 666667788899999999 899999999999999999998763
No 75
>PRK10650 multidrug efflux system protein MdtI; Provisional
Probab=96.65 E-value=0.012 Score=46.84 Aligned_cols=66 Identities=8% Similarity=0.251 Sum_probs=56.2
Q ss_pred HHHHHHHhhHHHHHHHhhCCChhHH-HHHhhcchHHHHHHHhhhcCCccccChhHHHHHHHHHHHHHHH
Q 018484 88 KLSAVLMGSHGLTKGSLAFLNYPAQ-IMFKSTKVLPVMIMGAFIPGLRRKYPAHEYVAALLLVFGLILF 155 (355)
Q Consensus 88 ~~s~~~~~~~~l~~~sL~~~s~~~~-~v~ks~~pi~v~l~~~l~~gl~~~~s~~~~~~l~li~~Gv~l~ 155 (355)
..-+++..+.++-..+++.+|++++ .+--....+.+.+.+.++ ++|+.++.+++++.+++.|++..
T Consensus 40 ~~~~~~~~sf~~Ls~al~~lpvgvAYAvW~GiG~v~~~~ig~~~--f~e~~~~~~~~gi~lIi~GVi~l 106 (109)
T PRK10650 40 LSLAAVLAAFSALSQAVKGIDLSVAYALWGGFGIAATLAAGWIL--FGQRLNRKGWIGLVLLLAGMVMI 106 (109)
T ss_pred HHHHHHHHHHHHHHHHHhhCchHHHHHHHHHHHHHHHHHHHHHH--cCCCCCHHHHHHHHHHHHHHHHh
Confidence 3455667788888999999999865 666667788889999999 89999999999999999999875
No 76
>PRK10650 multidrug efflux system protein MdtI; Provisional
Probab=96.56 E-value=0.08 Score=42.16 Aligned_cols=59 Identities=17% Similarity=0.241 Sum_probs=49.6
Q ss_pred HHHHHHHHHHHhhch-HHHHHHHhHHHHHHHHHHHHHhCCCcccchhhhHHHHHHHHHHH
Q 018484 251 VGQVSVLSLIALFGA-ATTAMITTARKAVTLFLSYLIFTKPLTEQHGTGLLLIAMGIILK 309 (355)
Q Consensus 251 l~~~~~~~~i~~~sa-~t~svv~~~k~v~~i~ls~l~f~~~~t~~~~iG~~lv~~Gv~ly 309 (355)
++..+....+++.+- +.+++..-+-.+.+.+.|+++|||++|+.+++|+++++.|++.-
T Consensus 47 ~sf~~Ls~al~~lpvgvAYAvW~GiG~v~~~~ig~~~f~e~~~~~~~~gi~lIi~GVi~l 106 (109)
T PRK10650 47 AAFSALSQAVKGIDLSVAYALWGGFGIAATLAAGWILFGQRLNRKGWIGLVLLLAGMVMI 106 (109)
T ss_pred HHHHHHHHHHhhCchHHHHHHHHHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHHHHh
Confidence 445556667777664 45888888889999999999999999999999999999999864
No 77
>PRK09541 emrE multidrug efflux protein; Reviewed
Probab=96.50 E-value=0.017 Score=46.20 Aligned_cols=69 Identities=9% Similarity=0.165 Sum_probs=57.5
Q ss_pred HHHHHHHhhHHHHHHHhhCCChhHHHHH-hhcchHHHHHHHhhhcCCccccChhHHHHHHHHHHHHHHHhcc
Q 018484 88 KLSAVLMGSHGLTKGSLAFLNYPAQIMF-KSTKVLPVMIMGAFIPGLRRKYPAHEYVAALLLVFGLILFTMA 158 (355)
Q Consensus 88 ~~s~~~~~~~~l~~~sL~~~s~~~~~v~-ks~~pi~v~l~~~l~~gl~~~~s~~~~~~l~li~~Gv~l~~~~ 158 (355)
..-+++..++.+...+++.+|.+.+--. -....+.+.+.++++ ++|+.++.+++++.++++|+++.-..
T Consensus 35 ~~~~~~~~sf~~l~~al~~ipl~iAYavw~GlG~v~~~l~g~~~--f~e~~~~~~~~gi~lIi~GVi~l~l~ 104 (110)
T PRK09541 35 GTIICYCASFWLLAQTLAYIPTGIAYAIWSGVGIVLISLLSWGF--FGQRLDLPAIIGMMLICAGVLVINLL 104 (110)
T ss_pred HHHHHHHHHHHHHHHHHhhCCchhHHHHHHHHHHHHHHHHHHHH--hCCCCCHHHHHHHHHHHHHHHHHhcC
Confidence 3445677888888999999999877555 446778889999999 89999999999999999999988543
No 78
>PF05653 Mg_trans_NIPA: Magnesium transporter NIPA; InterPro: IPR008521 This family consists of several eukaryotic proteins of unknown function.
Probab=96.43 E-value=0.027 Score=53.16 Aligned_cols=121 Identities=17% Similarity=0.146 Sum_probs=84.7
Q ss_pred chhhHHHHHHHHHHHHHhHHHHHHHHHhhCCCCChhhHHHHHHHHhHHHHHHHHHhhchHHHHHHHHhhhhHHHHHHHHH
Q 018484 166 FSLIGVLMISGALVMDSFLGNLQEVIFTVNPDTTQMEMLFCSTVVGLPFLLVPMILTGELVRAWNSCSQHLYVYGVLVFE 245 (355)
Q Consensus 166 ~~~~G~~l~l~s~~~~a~~~v~~~~l~~~~~~~~~~~l~~~~~l~~~~~ll~~~~~~ge~~~~~~~~~~~~~~~~~l~l~ 245 (355)
++.+|..+++.++++.+...++||+-..+.++.+... ++ ...+. .++|.+|.-+.
T Consensus 4 ~~~iGv~lav~ss~~~~~g~~lqk~~~~r~~~~~~~~--------------------~~--~~~~~-l~~~~W~~G~~-- 58 (300)
T PF05653_consen 4 DFYIGVLLAVVSSIFIAVGFNLQKKSHLRLPRGSLRA--------------------GS--GGRSY-LRRPLWWIGLL-- 58 (300)
T ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcccccc--------------------cc--hhhHH-HhhHHHHHHHH--
Confidence 4689999999999999999999988666542210000 00 00000 11222221111
Q ss_pred HHHHHHHHHHHHHHHHhhchHHHHHHHhHHHHHHHHHHHHHhCCCcccchhhhHHHHHHHHHHHhccC
Q 018484 246 AMATFVGQVSVLSLIALFGAATTAMITTARKAVTLFLSYLIFTKPLTEQHGTGLLLIAMGIILKMLPE 313 (355)
Q Consensus 246 ~~~~~l~~~~~~~~i~~~sa~t~svv~~~k~v~~i~ls~l~f~~~~t~~~~iG~~lv~~Gv~ly~~~k 313 (355)
...+|+...+..+...++...+..+.+.-+++.+++-.+.+|+++...++|.++++.|..+-....
T Consensus 59 --~~~~g~~~~~~Al~~ap~slv~Plg~~~lv~~~~~a~~~l~e~~~~~~~~G~~l~i~G~~liv~~~ 124 (300)
T PF05653_consen 59 --LMVLGEILNFVALGFAPASLVAPLGALSLVFNAVLARFFLGEKLTRRDIVGCALIILGSVLIVIFA 124 (300)
T ss_pred --HHhcchHHHHHHHHhhhHHHHHHHHhhhhhhHHHHhHHHhcccchHhHHhhHHHHHhhheeeEEeC
Confidence 123566666778888888889999999999999999999999999999999999999998765443
No 79
>PRK13499 rhamnose-proton symporter; Provisional
Probab=96.41 E-value=0.9 Score=43.68 Aligned_cols=220 Identities=8% Similarity=-0.013 Sum_probs=119.1
Q ss_pred HHHHHHhhHHHHHHHhhCCChhHHHHHh-hcchHHHHHHHhhhcCCcccc---C----hhHHHHHHHHHHHHHHHhc---
Q 018484 89 LSAVLMGSHGLTKGSLAFLNYPAQIMFK-STKVLPVMIMGAFIPGLRRKY---P----AHEYVAALLLVFGLILFTM--- 157 (355)
Q Consensus 89 ~s~~~~~~~~l~~~sL~~~s~~~~~v~k-s~~pi~v~l~~~l~~gl~~~~---s----~~~~~~l~li~~Gv~l~~~--- 157 (355)
-+++...+..+...+++|+.++...-+- -...+...+++.++ ++|-. + .....+++++++|+++.+.
T Consensus 79 ~G~~W~iG~i~~~~s~~~iGvS~~~pIs~Gl~lv~gtL~~~i~--~gew~~~~~t~~g~~~~~gv~liliGi~l~s~Ag~ 156 (345)
T PRK13499 79 FGALWGIGGITYGLTMRYLGMSLGIGIAIGITLIVGTLMPPII--NGNFDVLLATNGGRMTLLGVLVALIGVAIVGRAGQ 156 (345)
T ss_pred HHHHHHhhhhhHHHHHHHhhhhhhhhHHHHHHHHHHHHHHHHH--ccccccccccchHHHHHHHHHHHHHHHHHHHHhhh
Confidence 3566667777889999997776553332 34456666777776 45432 1 2357889999999999988
Q ss_pred -cCCCC-----CCCchhhHHHHHHHHHHHHHhHH-------HHHHHHHhhCCCCChhhHHHHH--HHHhHHHH-HHHHHh
Q 018484 158 -ADAQT-----SPNFSLIGVLMISGALVMDSFLG-------NLQEVIFTVNPDTTQMEMLFCS--TVVGLPFL-LVPMIL 221 (355)
Q Consensus 158 -~~~~~-----~~~~~~~G~~l~l~s~~~~a~~~-------v~~~~l~~~~~~~~~~~l~~~~--~l~~~~~l-l~~~~~ 221 (355)
.|.+. +....-.|+++++++.+.++.++ ...+.... .+..+.+..+.-. .+++..+. ++.+..
T Consensus 157 ~k~~~~~~~~~~~~~~~KGi~ialisgi~~~~f~~~~~~~~~~~~~a~~-~g~~~~~~~lp~~~~~~~G~~~~n~~~~~~ 235 (345)
T PRK13499 157 LKERKMGIKKAEEFNLKKGLILAVMSGIFSACFSFAMDAGKPMHEAAAA-LGVDPLYAALPSYVVIMGGGAITNLGFCFI 235 (345)
T ss_pred hcccccccccccccchHhHHHHHHHHHHHHHHHHHHHhhccchhhhhhh-cCCCchHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 55422 11234789999999998888877 33222111 1111122111110 01111111 000110
Q ss_pred ---hchH-HHHHHHHhhhhHHHH---HHHHHHHHHHHHHHHHHHHHHhhchHHHHH---HH-hHHHHHHHHHHHHHhCCC
Q 018484 222 ---TGEL-VRAWNSCSQHLYVYG---VLVFEAMATFVGQVSVLSLIALFGAATTAM---IT-TARKAVTLFLSYLIFTKP 290 (355)
Q Consensus 222 ---~ge~-~~~~~~~~~~~~~~~---~l~l~~~~~~l~~~~~~~~i~~~sa~t~sv---v~-~~k~v~~i~ls~l~f~~~ 290 (355)
.++. ....++....+..+. .-.+.++.-++++.++...-++.+.....+ .. .+.-+++.+.|++ ++|.
T Consensus 236 ~~~k~~~~~~~~~~~~~~~~~~~n~l~~~l~G~~W~~~~~~y~~~~~~~g~~~~~~sw~l~m~~~ViistlwGi~-lkE~ 314 (345)
T PRK13499 236 RLAKNKDLSLKADFSLAKPLLITNVLLSALAGVMWYLQFFFYAMGHSKLGAQYDFVSWMLHMSFYVLCGNLWGLV-LKEW 314 (345)
T ss_pred HHhhCCCcccchhccccchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCccchHHHHHhccHHHHHHHHhhhh-hhhc
Confidence 0010 000011000011121 223345555566777766666664443323 33 5656888888984 8876
Q ss_pred cc------cchhhhHHHHHHHHHHHhcc
Q 018484 291 LT------EQHGTGLLLIAMGIILKMLP 312 (355)
Q Consensus 291 ~t------~~~~iG~~lv~~Gv~ly~~~ 312 (355)
=+ ...++|+++++.|..+-.+.
T Consensus 315 K~a~~k~~~~l~~G~vliI~g~~lig~~ 342 (345)
T PRK13499 315 KGASRRPVRVLSLGCVVIILAANIVGLG 342 (345)
T ss_pred cCCCccchhHHHHHHHHHHHHHHHHhhc
Confidence 55 56789999999998876543
No 80
>PRK11431 multidrug efflux system protein; Provisional
Probab=96.31 E-value=0.049 Score=43.07 Aligned_cols=60 Identities=15% Similarity=0.074 Sum_probs=49.8
Q ss_pred HHHHHHHHHHHhhc-hHHHHHHHhHHHHHHHHHHHHHhCCCcccchhhhHHHHHHHHHHHh
Q 018484 251 VGQVSVLSLIALFG-AATTAMITTARKAVTLFLSYLIFTKPLTEQHGTGLLLIAMGIILKM 310 (355)
Q Consensus 251 l~~~~~~~~i~~~s-a~t~svv~~~k~v~~i~ls~l~f~~~~t~~~~iG~~lv~~Gv~ly~ 310 (355)
.+.++....+++.+ .+.+++..-+-.+.+.+.|+++|||++|+.+++|+.+++.|++.-.
T Consensus 41 ~sf~~Ls~al~~ip~gvaYAvW~GiG~v~~~lig~~~f~e~~~~~~~~gi~lIi~GVv~l~ 101 (105)
T PRK11431 41 VSMALLAWAMKSLPVGTAYAVWTGIGAVGAAITGIVLLGESASPARLLSLALIVAGIIGLK 101 (105)
T ss_pred HHHHHHHHHHhhCCcHhHHHHHHHHHHHHHHHHHHHHhCCCCCHHHHHHHHHHHHHHHhhh
Confidence 44555556677766 4457888888889999999999999999999999999999998754
No 81
>COG2076 EmrE Membrane transporters of cations and cationic drugs [Inorganic ion transport and metabolism]
Probab=96.15 E-value=0.057 Score=42.54 Aligned_cols=62 Identities=21% Similarity=0.153 Sum_probs=50.5
Q ss_pred HHHHHHHHHHHhhc-hHHHHHHHhHHHHHHHHHHHHHhCCCcccchhhhHHHHHHHHHHHhcc
Q 018484 251 VGQVSVLSLIALFG-AATTAMITTARKAVTLFLSYLIFTKPLTEQHGTGLLLIAMGIILKMLP 312 (355)
Q Consensus 251 l~~~~~~~~i~~~s-a~t~svv~~~k~v~~i~ls~l~f~~~~t~~~~iG~~lv~~Gv~ly~~~ 312 (355)
.+..+.-..+|+.+ .+.+++.+-+-.+.+.+.|+++|||++++.+++|+.++++|++.-...
T Consensus 42 ~sf~~Ls~alk~ipvgvAYAiW~GiG~v~~~l~g~~~f~E~l~~~~~~gl~LiiaGvi~Lk~~ 104 (106)
T COG2076 42 LSFYLLSLALKTIPLGVAYAIWTGIGIVGTALVGVLLFGESLSLIKLLGLALILAGVIGLKLG 104 (106)
T ss_pred HHHHHHHHHHhhCchHHHHHHHHHHHHHHHHHHHHHhcCCcCCHHHHHHHHHHHHHHHHhhhc
Confidence 34445556677766 345788888888999999999999999999999999999999876544
No 82
>KOG4510 consensus Permease of the drug/metabolite transporter (DMT) superfamily [General function prediction only]
Probab=95.96 E-value=0.003 Score=57.51 Aligned_cols=73 Identities=19% Similarity=0.410 Sum_probs=65.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHhhchHHHHHHHhHHHHHHHHHHHHHhCCCcccchhhhHHHHHHHHHHHhccCC
Q 018484 242 LVFEAMATFVGQVSVLSLIALFGAATTAMITTARKAVTLFLSYLIFTKPLTEQHGTGLLLIAMGIILKMLPEN 314 (355)
Q Consensus 242 l~l~~~~~~l~~~~~~~~i~~~sa~t~svv~~~k~v~~i~ls~l~f~~~~t~~~~iG~~lv~~Gv~ly~~~k~ 314 (355)
+++-+++|+.|.+..|+...+.+-.-+++++...|++++++++++++|+.|....+|..+.+.|+++-..+..
T Consensus 100 LiLRg~mG~tgvmlmyya~~~mslaDA~vItFssPvft~ifaw~~LkE~~t~~eaL~s~itl~GVVLIvRPpF 172 (346)
T KOG4510|consen 100 LILRGFMGFTGVMLMYYALMYMSLADAVVITFSSPVFTIIFAWAFLKEPFTKFEALGSLITLLGVVLIVRPPF 172 (346)
T ss_pred EEeehhhhhhHHHHHHHHHhhcchhheEEEEecChHHHHHHHHHHHcCCCcHHHHHHHHHhhheEEEEecCCc
Confidence 5556888888999999999999999999999999999999999999999999999999999999988665543
No 83
>KOG2234 consensus Predicted UDP-galactose transporter [Carbohydrate transport and metabolism]
Probab=95.93 E-value=0.7 Score=44.02 Aligned_cols=63 Identities=22% Similarity=0.249 Sum_probs=57.9
Q ss_pred HHHHHHHHHHHHhhchHHHHHHHhHHHHHHHHHHHHHhCCCcccchhhhHHHHHHHHHHHhcc
Q 018484 250 FVGQVSVLSLIALFGAATTAMITTARKAVTLFLSYLIFTKPLTEQHGTGLLLIAMGIILKMLP 312 (355)
Q Consensus 250 ~l~~~~~~~~i~~~sa~t~svv~~~k~v~~i~ls~l~f~~~~t~~~~iG~~lv~~Gv~ly~~~ 312 (355)
.+-|-..|....+.+|.|..+...+|-..+-+++++++++.++..||...++.++|+.+-++.
T Consensus 103 alqNnl~yval~~ldaatyqVt~qlKI~tTA~f~vl~L~rkLs~~Qw~Al~lL~~Gv~~vQ~~ 165 (345)
T KOG2234|consen 103 ALQNNLQYVALSNLDAATYQVTYQLKILTTAIFSVLILRRKLSRLQWMALVLLFAGVALVQLP 165 (345)
T ss_pred HHhhhHHHHHHhcCCchhhhhhhhHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHHHhcc
Confidence 355668889999999999999999999999999999999999999999999999999998833
No 84
>KOG2765 consensus Predicted membrane protein [Function unknown]
Probab=95.87 E-value=0.016 Score=55.30 Aligned_cols=76 Identities=17% Similarity=0.273 Sum_probs=67.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHhhchHHHHHHHhHHHHHHHHHHHHHhCCCcccchhhhHHHHHHHHHHHhccCCCCC
Q 018484 242 LVFEAMATFVGQVSVLSLIALFGAATTAMITTARKAVTLFLSYLIFTKPLTEQHGTGLLLIAMGIILKMLPENKAP 317 (355)
Q Consensus 242 l~l~~~~~~l~~~~~~~~i~~~sa~t~svv~~~k~v~~i~ls~l~f~~~~t~~~~iG~~lv~~Gv~ly~~~k~~~~ 317 (355)
-+..|..-+++|+.....++.++....+++.....++++.++.++-+|.+|+.+.++..+.++|+++-+..+.+++
T Consensus 162 sl~fc~lWF~anl~~naALa~TsVAS~TilSStSs~FtL~la~if~~e~ft~sKllav~~si~GViiVt~~~s~~~ 237 (416)
T KOG2765|consen 162 SLFFCPLWFLANLTSNAALAFTSVASTTILSSTSSFFTLFLAAIFPVERFTLSKLLAVFVSIAGVIIVTMGDSKQN 237 (416)
T ss_pred HHHHHHHHHHHHHHHHHHhhhhhhhhhhhhhhcchHHHHHHHHHcCcchhhHHHHHHHHHhhccEEEEEecccccc
Confidence 3344667778899999999999999999999999999999999999999999999999999999999887766553
No 85
>PF06800 Sugar_transport: Sugar transport protein; InterPro: IPR010651 This is a family of bacterial sugar transporters approximately 300 residues long. Members include glucose uptake proteins [], ribose transport proteins, and several putative and hypothetical membrane proteins probably involved in sugar transport across bacterial membranes.; GO: 0015144 carbohydrate transmembrane transporter activity, 0034219 carbohydrate transmembrane transport, 0016021 integral to membrane
Probab=95.69 E-value=0.13 Score=47.67 Aligned_cols=82 Identities=22% Similarity=0.287 Sum_probs=61.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhhchHHHHHHHhH-HHHHHHHHHHHHhCCCcccchh----hhHHHHHHHHHHHhc
Q 018484 237 YVYGVLVFEAMATFVGQVSVLSLIALFGAATTAMITTA-RKAVTLFLSYLIFTKPLTEQHG----TGLLLIAMGIILKML 311 (355)
Q Consensus 237 ~~~~~l~l~~~~~~l~~~~~~~~i~~~sa~t~svv~~~-k~v~~i~ls~l~f~~~~t~~~~----iG~~lv~~Gv~ly~~ 311 (355)
..+..-++++++-.++|...|...++.|-..+-.+++- .-+.+.++++++|||.-+..++ +++++++.|+.+.++
T Consensus 43 ~~~~~~~lsG~~W~iGq~~qf~s~~~~GVS~tmPiStg~QLvg~sl~gv~~fgEW~~~~~~~~G~~Al~liiiGv~lts~ 122 (269)
T PF06800_consen 43 TSFIVAFLSGAFWAIGQIGQFKSFKKIGVSKTMPISTGLQLVGTSLIGVLFFGEWTTTTQKIIGFLALVLIIIGVILTSY 122 (269)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhcceeeeccchhHHHHHHHHHHHhhcCCCCCcchHHHHHHHHHHHHHHHHHhcc
Confidence 34445566777778999999999999887766665544 4456888999999997776544 477899999998887
Q ss_pred cCCCCCC
Q 018484 312 PENKAPA 318 (355)
Q Consensus 312 ~k~~~~~ 318 (355)
.++++++
T Consensus 123 ~~~~~~~ 129 (269)
T PF06800_consen 123 QDKKSDK 129 (269)
T ss_pred ccccccc
Confidence 7666553
No 86
>COG3238 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=95.42 E-value=0.49 Score=39.75 Aligned_cols=137 Identities=18% Similarity=0.198 Sum_probs=78.5
Q ss_pred hhHHHHHHHHHHHHHhHHHHHHHHHhhCCCCChhhHHHHHHHHhHHHHHHHHHhhchHHHHHHHHhhhhHHHHHHHHHHH
Q 018484 168 LIGVLMISGALVMDSFLGNLQEVIFTVNPDTTQMEMLFCSTVVGLPFLLVPMILTGELVRAWNSCSQHLYVYGVLVFEAM 247 (355)
Q Consensus 168 ~~G~~l~l~s~~~~a~~~v~~~~l~~~~~~~~~~~l~~~~~l~~~~~ll~~~~~~ge~~~~~~~~~~~~~~~~~l~l~~~ 247 (355)
++..++.+++-++-.++.....|+.+..+ ++.-..+.+...++..+....+.. +....+....+.|+ | .+..++
T Consensus 4 ~l~ll~~i~aG~~l~~Q~~iN~qL~~~~~--spl~As~isf~vGt~~L~~l~l~~-~~~~~~a~~~~~pw-W--~~~GG~ 77 (150)
T COG3238 4 YLYLLFAILAGALLPLQAAINGRLARYLG--SPLLASLISFLVGTVLLLILLLIK-QGHPGLAAVASAPW-W--AWIGGL 77 (150)
T ss_pred HHHHHHHHHHhhhhhhHHHHHHHHHHHcC--ChHHHHHHHHHHHHHHHHHHHHHh-cCCCchhhccCCch-H--HHHccc
Confidence 44556666666666677666666655432 455556666666666554443332 21111222233342 2 223344
Q ss_pred HHHHHHHHHHHHHHhhchHHHHHHHhHH-HHHHHHHHHHHhC----CCcccchhhhHHHHHHHHHHHh
Q 018484 248 ATFVGQVSVLSLIALFGAATTAMITTAR-KAVTLFLSYLIFT----KPLTEQHGTGLLLIAMGIILKM 310 (355)
Q Consensus 248 ~~~l~~~~~~~~i~~~sa~t~svv~~~k-~v~~i~ls~l~f~----~~~t~~~~iG~~lv~~Gv~ly~ 310 (355)
++.+.-...-....+.+++++..+...- -+.+++++.+=+. .+++...++|++++++|+++-.
T Consensus 78 lGa~~vt~s~~l~p~lGa~~t~~l~i~gQli~glliD~fG~~g~~~~~~~~~r~lgi~L~l~gil~~~ 145 (150)
T COG3238 78 LGAIFVTSSILLAPRLGAATTIALVIAGQLIMGLLIDHFGWFGVPKRPLNLPRILGILLVLAGILLAR 145 (150)
T ss_pred hhhhhhhhhHHhccchhHHHHHHHHHHHHHHHHHHHHhhcccCCCcCCCCHHHHHHHHHHHHHHHHhc
Confidence 4444444455667788877765554443 4455566655443 6899999999999999965544
No 87
>PF00893 Multi_Drug_Res: Small Multidrug Resistance protein; InterPro: IPR000390 Members of this family which have been characterised, belong to the small multidrug resistance (Smr) protein family and are integral membrane proteins. They confer resistance to a wide range of toxic compounds by removing them for the cells. The efflux is coupled to an influx of protons. An example is Escherichia coli mvrC P23895 from SWISSPROT which prevents the incorporation of methyl viologen into cells [] and is involved in ethidium bromide efflux [].; GO: 0016021 integral to membrane; PDB: 2I68_A.
Probab=94.75 E-value=0.15 Score=39.33 Aligned_cols=53 Identities=13% Similarity=0.035 Sum_probs=29.9
Q ss_pred HHHHHHHHHHHHhhchHH-HHHHHhHHHHHHHHHHHHHhCCCcccchhhhHHHH
Q 018484 250 FVGQVSVLSLIALFGAAT-TAMITTARKAVTLFLSYLIFTKPLTEQHGTGLLLI 302 (355)
Q Consensus 250 ~l~~~~~~~~i~~~sa~t-~svv~~~k~v~~i~ls~l~f~~~~t~~~~iG~~lv 302 (355)
.++.++....+++.+... +.+..-+..+.+.+.|+++|||++|+.+++|+.++
T Consensus 40 ~~s~~~l~~al~~lp~~vaYavw~g~g~v~~~~~~~~~f~E~~s~~~~~gi~lI 93 (93)
T PF00893_consen 40 GLSFYFLSLALKKLPLSVAYAVWTGLGIVGVTLVGVFFFGESLSLSKWLGIGLI 93 (93)
T ss_dssp HHHHHHHHHHH-------HHHHHHHHHHHHHHHHHHHHH--------HHHHHHH
T ss_pred HHHHHHHHHHHhhcchHHHHHHHHHHHHHHHHHHHHHHhCCCCCHHHHhheeeC
Confidence 345566677788876544 46666678889999999999999999999999874
No 88
>PF00893 Multi_Drug_Res: Small Multidrug Resistance protein; InterPro: IPR000390 Members of this family which have been characterised, belong to the small multidrug resistance (Smr) protein family and are integral membrane proteins. They confer resistance to a wide range of toxic compounds by removing them for the cells. The efflux is coupled to an influx of protons. An example is Escherichia coli mvrC P23895 from SWISSPROT which prevents the incorporation of methyl viologen into cells [] and is involved in ethidium bromide efflux [].; GO: 0016021 integral to membrane; PDB: 2I68_A.
Probab=94.59 E-value=0.073 Score=41.09 Aligned_cols=56 Identities=13% Similarity=0.154 Sum_probs=34.3
Q ss_pred HHHHhhHHHHHHHhhCCChhHH-HHHhhcchHHHHHHHhhhcCCccccChhHHHHHHHH
Q 018484 91 AVLMGSHGLTKGSLAFLNYPAQ-IMFKSTKVLPVMIMGAFIPGLRRKYPAHEYVAALLL 148 (355)
Q Consensus 91 ~~~~~~~~l~~~sL~~~s~~~~-~v~ks~~pi~v~l~~~l~~gl~~~~s~~~~~~l~li 148 (355)
.++..+..+...+++++|.+.. .+......+.+.+.+.++ ++|+.++.++.++.++
T Consensus 37 ~~~~~s~~~l~~al~~lp~~vaYavw~g~g~v~~~~~~~~~--f~E~~s~~~~~gi~lI 93 (93)
T PF00893_consen 37 VGYGLSFYFLSLALKKLPLSVAYAVWTGLGIVGVTLVGVFF--FGESLSLSKWLGIGLI 93 (93)
T ss_dssp HHHHHHHHHHHHHH-------HHHHHHHHHHHHHHHHHHHH--H--------HHHHHHH
T ss_pred HHHHHHHHHHHHHHhhcchHHHHHHHHHHHHHHHHHHHHHH--hCCCCCHHHHhheeeC
Confidence 4678888999999999999866 666778889999999999 8999999999998764
No 89
>TIGR00803 nst UDP-galactose transporter. NSTs generally appear to function by antiport mechanisms, exchanging a nucleotide-sugar for a nucleotide. Thus, CMP-sialic acid is exchanged for CMP; GDP-mannose is preferentially exchanged for GMP, and UDP-galactose and UDP-N-acetylglucosamine are exchanged for UMP (or possibly UDP). Other nucleotide sugars (e.g., GDP-fucose, UDP-xylose, UDP-glucose, UDP-N-acetylgalactosamine, etc.) may also be transported in exchange for various nucleotides, but their transporters have not been molecularly characterized. Each compound appears to be translocated by its own transport protein. Transport allows the compound, synthesized in the cytoplasm, to be exported to the lumen of the Golgi apparatus or the endoplasmic reticulum where it is used for the synthesis of glycoproteins and glycolipids.
Probab=94.04 E-value=0.22 Score=44.63 Aligned_cols=64 Identities=11% Similarity=0.239 Sum_probs=54.7
Q ss_pred HHHHHHhhHHHHHHHhhCCChhHHHHHhhcchHHHHHHHhhhcCCccccChhHHHHHHHHHHHHHH
Q 018484 89 LSAVLMGSHGLTKGSLAFLNYPAQIMFKSTKVLPVMIMGAFIPGLRRKYPAHEYVAALLLVFGLIL 154 (355)
Q Consensus 89 ~s~~~~~~~~l~~~sL~~~s~~~~~v~ks~~pi~v~l~~~l~~gl~~~~s~~~~~~l~li~~Gv~l 154 (355)
+.++.+....+-.+.++|.+..+..+.-++.++++.+++.++ ++++++..++.+..++..|+.+
T Consensus 158 ~~~~~a~~~~~v~~vlk~~~~~~~~~~~~~~~~~s~lls~~~--f~~~ls~~~~~g~~lV~~~~~l 221 (222)
T TIGR00803 158 VGLLNVGGGLCIGGVVRYADNTTKSFVTALSIILSTLASVRL--FDAKISSTFYLGAILVFLATFL 221 (222)
T ss_pred HHHHHHhcCceeeehhHHhHHHHHHHHHHHHHHHHHHHHHHH--hcCCccHHHHHHHHHHHeeeEe
Confidence 334455555678899999999999999999999999999988 8999999999999999888654
No 90
>KOG1441 consensus Glucose-6-phosphate/phosphate and phosphoenolpyruvate/phosphate antiporter [Carbohydrate transport and metabolism; Amino acid transport and metabolism]
Probab=93.85 E-value=0.43 Score=45.30 Aligned_cols=136 Identities=9% Similarity=0.071 Sum_probs=89.3
Q ss_pred hhHHHHHHHHHHHHHHHHHHHHhhhhhcc--CCCCchhHHHHHHHHHHHHHHH-Hh-----ccc-----CCCCCCchHHH
Q 018484 20 RWQQFLICSSGFFFGYLVNGICEEYVYNR--LQFSYGWYFTFVQGFVYLVLIY-LQ-----GFT-----TKQMVNPWKTY 86 (355)
Q Consensus 20 ~~~~~~~~~~~i~~~~~~~~~~~k~i~~~--~~f~~p~~lt~~Q~~~~~~~~~-~~-----~~~-----~~~~~~~~~~~ 86 (355)
.|.-++.+..+ -+++.+..++.|+++++ ++.+. .-+...|.-+..+... +. +.. ....+.+....
T Consensus 161 n~~G~i~a~~s-~~~~al~~I~~~~ll~~~~~~~~~-~~ll~y~ap~s~~~Ll~P~~~~~~~~~~~~~~~~~~~~~~~~~ 238 (316)
T KOG1441|consen 161 NLFGFISAMIS-NLAFALRNILSKKLLTSKGESLNS-MNLLYYTAPISLIFLLIPFLDYVEGNKFVGFLTAPWFVTFLIL 238 (316)
T ss_pred cHHHHHHHHHH-HHHHHHHHHHHHHhhhccccccCc-hHHHHHhhhHHHHHHhcchHhhhcccceeeeeccccchhhHHH
Confidence 35556555544 44566788999998853 34443 3333333333333222 11 110 00111122223
Q ss_pred HHHHHHHHhhHHHHHHHhhCCChhHHHHHhhcchHHHHHHHhhhcCCccccChhHHHHHHHHHHHHHHHhccC
Q 018484 87 VKLSAVLMGSHGLTKGSLAFLNYPAQIMFKSTKVLPVMIMGAFIPGLRRKYPAHEYVAALLLVFGLILFTMAD 159 (355)
Q Consensus 87 ~~~s~~~~~~~~l~~~sL~~~s~~~~~v~ks~~pi~v~l~~~l~~gl~~~~s~~~~~~l~li~~Gv~l~~~~~ 159 (355)
...++++.+.....+..+..++.-+++++-..+-+.+.+.++++ ++++.++.+.++..+.++|+++.....
T Consensus 239 ~~~sv~~f~~Nls~f~~ig~tSalT~~V~g~~K~~~vi~~s~~i--F~~pvt~~n~~G~~iai~Gv~~Y~~~k 309 (316)
T KOG1441|consen 239 LLNSVLAFLLNLSAFLVIGRTSALTYSVAGHMKRIVVIVVSWLI--FGNPVTFLNALGYAIAILGVFLYSRAK 309 (316)
T ss_pred HHHHHHHHHHHHHHHHHHcccCchhhhhhccceEEEEEEeEeee--ecCCCchhhHHHHHHHHHHHHHHHHHh
Confidence 34566666777788999999999999999999999999999888 889999999999999999999986643
No 91
>COG4975 GlcU Putative glucose uptake permease [Carbohydrate transport and metabolism]
Probab=93.64 E-value=0.025 Score=51.01 Aligned_cols=208 Identities=14% Similarity=0.218 Sum_probs=123.6
Q ss_pred HHHHHhhHHHHHHHhhCCChhHHHHHh-hcchHHHHHHHhhhcCCccccChhH----HHHHHHHHHHHHHHhccCCCC--
Q 018484 90 SAVLMGSHGLTKGSLAFLNYPAQIMFK-STKVLPVMIMGAFIPGLRRKYPAHE----YVAALLLVFGLILFTMADAQT-- 162 (355)
Q Consensus 90 s~~~~~~~~l~~~sL~~~s~~~~~v~k-s~~pi~v~l~~~l~~gl~~~~s~~~----~~~l~li~~Gv~l~~~~~~~~-- 162 (355)
+++...+...++.|.+++.++.+.=+- .+..+-+-+++.+. |+|-.+..+ ..++++++.|+.+.+..|...
T Consensus 66 G~~Ws~GQ~~Qfka~~~iGVSkamPiStG~QLVg~sL~gV~~--f~EW~t~~~~IlG~iAliliviG~~lTs~~~~~nk~ 143 (288)
T COG4975 66 GAFWSFGQANQFKAIQLIGVSKAMPISTGMQLVGTSLFGVFV--FHEWTTPTQIILGFIALILIVIGIYLTSKQDRNNKE 143 (288)
T ss_pred hhHhhhhhhhhhhheeeeeeeccccccchhhHhhceeeeEEE--EeccCcchhHHHHHHHHHHHHHhheEeeeecccccc
Confidence 344456666788999997776543222 24556667788888 888888766 357888999999998887521
Q ss_pred --CCCchhhHHHHHHHHHHHHHhHHHHHHHHHhhCCCCChhhHHHHHHHHhHHHHHHH-HHhhchHHHHHHHHhhhhHHH
Q 018484 163 --SPNFSLIGVLMISGALVMDSFLGNLQEVIFTVNPDTTQMEMLFCSTVVGLPFLLVP-MILTGELVRAWNSCSQHLYVY 239 (355)
Q Consensus 163 --~~~~~~~G~~l~l~s~~~~a~~~v~~~~l~~~~~~~~~~~l~~~~~l~~~~~ll~~-~~~~ge~~~~~~~~~~~~~~~ 239 (355)
++++.-.|+..++.|.+-+-.+.+..+. ++ .+-+...+-.+ ++..+.... ....+|.+ .....|
T Consensus 144 ~~~~~n~kkgi~~L~iSt~GYv~yvvl~~~-f~----v~g~saiLPqA-iGMv~~ali~~~~~~~~~-------~~K~t~ 210 (288)
T COG4975 144 EENPSNLKKGIVILLISTLGYVGYVVLFQL-FD----VDGLSAILPQA-IGMVIGALILGFFKMEKR-------FNKYTW 210 (288)
T ss_pred ccChHhhhhheeeeeeeccceeeeEeeecc-cc----ccchhhhhHHH-HHHHHHHHHHhhcccccc-------hHHHHH
Confidence 2233456777766676655544444321 21 12222222211 111111100 01111110 011123
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHhhchHHHHHHHhHHHHHHHHHHHHHhCCCcccch----hhhHHHHHHHHHHHhccC
Q 018484 240 GVLVFEAMATFVGQVSVLSLIALFGAATTAMITTARKAVTLFLSYLIFTKPLTEQH----GTGLLLIAMGIILKMLPE 313 (355)
Q Consensus 240 ~~l~l~~~~~~l~~~~~~~~i~~~sa~t~svv~~~k~v~~i~ls~l~f~~~~t~~~----~iG~~lv~~Gv~ly~~~k 313 (355)
.-++.++.-..||++.+..-++.+-.|.=-...+--+++.+-++++++|+=|..+ ++|+.+++.|..+-...|
T Consensus 211 -~nii~G~~Wa~GNl~ml~a~~~~GvAt~FSlSQlgViisTiGGIl~L~ekKtkkEm~~v~iGiilivvgai~lg~~K 287 (288)
T COG4975 211 -LNIIPGLIWAIGNLFMLLAAQKVGVATSFSLSQLGVIISTIGGILFLGEKKTKKEMVYVIIGIILIVVGAILLGIAK 287 (288)
T ss_pred -HHHhhHHHHHhhHHHHHHhhhhhceeeeeeHhhheeeeeecceEEEEeccCchhhhhhhhhhHHHHHHHhhhhheec
Confidence 2233456666899999988888776654455566678899999999999888764 578888888887765544
No 92
>PF10639 UPF0546: Uncharacterised protein family UPF0546; InterPro: IPR018908 This family of proteins has no known function. Many members are annotated as potential transmembrane proteins.
Probab=92.81 E-value=0.19 Score=40.19 Aligned_cols=62 Identities=11% Similarity=0.083 Sum_probs=50.4
Q ss_pred HHHhhHHHHHHHhhCCChhHHHHH-hhcchHHHHHHHhhhcCCccccChhHHHHHHHHHHHHHHH
Q 018484 92 VLMGSHGLTKGSLAFLNYPAQIMF-KSTKVLPVMIMGAFIPGLRRKYPAHEYVAALLLVFGLILF 155 (355)
Q Consensus 92 ~~~~~~~l~~~sL~~~s~~~~~v~-ks~~pi~v~l~~~l~~gl~~~~s~~~~~~l~li~~Gv~l~ 155 (355)
++..+....++.+...+++...-+ .++.-++|.+.++++ .+|..+++.++++.++++|+.+.
T Consensus 50 lNq~GSv~f~~~L~~~dlSlavPi~Nsl~fvfT~l~g~~l--ge~~~~~~~~~G~~Li~~Gv~Lc 112 (113)
T PF10639_consen 50 LNQSGSVLFFLLLGSADLSLAVPIANSLAFVFTALTGWLL--GEEVISRRTWLGMALILAGVALC 112 (113)
T ss_pred HHHHHHHHHHHHHhcCCceeeehHHhHHHHHHHHHHHHHh--cCcccchhHHHHHHHHHcCeeee
Confidence 444455567888999999887655 589999999999998 57777888999999999998753
No 93
>COG5006 rhtA Threonine/homoserine efflux transporter [Amino acid transport and metabolism]
Probab=92.68 E-value=2.8 Score=38.34 Aligned_cols=61 Identities=13% Similarity=-0.016 Sum_probs=54.4
Q ss_pred hhHHHHHHHhhCCChhHHHHHhhcchHHHHHHHhhhcCCccccChhHHHHHHHHHHHHHHHhc
Q 018484 95 GSHGLTKGSLAFLNYPAQIMFKSTKVLPVMIMGAFIPGLRRKYPAHEYVAALLLVFGLILFTM 157 (355)
Q Consensus 95 ~~~~l~~~sL~~~s~~~~~v~ks~~pi~v~l~~~l~~gl~~~~s~~~~~~l~li~~Gv~l~~~ 157 (355)
....+...+++.+|-.++.++-|..|..-.+.++++ ++|+++..||+++..++.+.+-.+.
T Consensus 222 lPYsLEmiAL~rlp~~~F~~LlSLePa~aAl~G~i~--L~e~ls~~qwlaI~~ViaAsaG~~l 282 (292)
T COG5006 222 LPYSLEMIALRRLPARTFGTLLSLEPALAALSGLIF--LGETLTLIQWLAIAAVIAASAGSTL 282 (292)
T ss_pred cchHHHHHHHhhCChhHHHHHHHhhHHHHHHHHHHH--hcCCCCHHHHHHHHHHHHHHhcccc
Confidence 556678899999999999999999999999999999 9999999999999998887764433
No 94
>PF06379 RhaT: L-rhamnose-proton symport protein (RhaT); InterPro: IPR004673 These proteins are members of the L-Rhamnose Symporter (RhaT) family. This family includes two characterised members, both of which function as L-rhamnose:H+ symporters and have 10 GES predicted transmembrane domains.; GO: 0015153 rhamnose transmembrane transporter activity, 0008645 hexose transport, 0016021 integral to membrane
Probab=92.39 E-value=2.3 Score=40.52 Aligned_cols=143 Identities=7% Similarity=-0.029 Sum_probs=75.8
Q ss_pred hhhHHHHHHHHHHHHHhHHHHHHHHHhhCCCCChhhHHHHHHHHhHHHHHHHHHhhchHHHHHHHHhhhh-HHHHHHHHH
Q 018484 167 SLIGVLMISGALVMDSFLGNLQEVIFTVNPDTTQMEMLFCSTVVGLPFLLVPMILTGELVRAWNSCSQHL-YVYGVLVFE 245 (355)
Q Consensus 167 ~~~G~~l~l~s~~~~a~~~v~~~~l~~~~~~~~~~~l~~~~~l~~~~~ll~~~~~~ge~~~~~~~~~~~~-~~~~~l~l~ 245 (355)
-..|+++..++.++++...+=.||+ |+...++.+-+....+.+-.|.+... +. .|+..+.....| ..+....+.
T Consensus 5 ii~Gii~h~iGg~~~~sfy~P~kkv-k~WsWEs~Wlv~gi~swli~P~~~a~-l~---ip~~~~i~~~~~~~~l~~~~l~ 79 (344)
T PF06379_consen 5 IILGIIFHAIGGFASGSFYVPFKKV-KGWSWESYWLVQGIFSWLIVPWLWAL-LA---IPDFFSIYSATPASTLFWTFLF 79 (344)
T ss_pred HHHHHHHHHHHHHHhhhhccchhhc-CCccHHHHHHHHHHHHHHHHHHHHHH-Hh---CCcHHHHHHhCChhHHHHHHHH
Confidence 4789999999988888766555443 22211122222112222223332211 11 223333333333 223334444
Q ss_pred HHHHHHHHHHHHHHHHhhc-hHHHHHHHhHHHHHHHHHHHHHhC-------CCcccchhhhHHHHHHHHHHHhccCC
Q 018484 246 AMATFVGQVSVLSLIALFG-AATTAMITTARKAVTLFLSYLIFT-------KPLTEQHGTGLLLIAMGIILKMLPEN 314 (355)
Q Consensus 246 ~~~~~l~~~~~~~~i~~~s-a~t~svv~~~k~v~~i~ls~l~f~-------~~~t~~~~iG~~lv~~Gv~ly~~~k~ 314 (355)
++.-.+|.+.+-..+++.+ ++..++..-+..++..++--++.| ++-....++|+++++.|+.+..++-.
T Consensus 80 G~lWGIGgltfGl~mryLGvSLG~sI~lGl~~~~GTlippi~~g~~~~l~~~~~g~~vL~Gv~v~LiGIai~g~AG~ 156 (344)
T PF06379_consen 80 GVLWGIGGLTFGLAMRYLGVSLGQSIALGLCAVFGTLIPPIFQGTFDELLATPSGQIVLLGVAVCLIGIAICGKAGS 156 (344)
T ss_pred HHHHhcchhhHhHHHHHHhHHHHHHHHHHHHHHHhhchHHHHcCcccccccCCCchhhhhHHHHHHHHHHHHhHHHH
Confidence 5555567776667777766 444555544444444444333332 23344688999999999999887643
No 95
>PF10639 UPF0546: Uncharacterised protein family UPF0546; InterPro: IPR018908 This family of proteins has no known function. Many members are annotated as potential transmembrane proteins.
Probab=91.77 E-value=0.72 Score=36.90 Aligned_cols=58 Identities=19% Similarity=0.250 Sum_probs=47.6
Q ss_pred HHHHHHHHHHHhhchHHHHHH-HhHHHHHHHHHHHHHhCCCcccchhhhHHHHHHHHHH
Q 018484 251 VGQVSVLSLIALFGAATTAMI-TTARKAVTLFLSYLIFTKPLTEQHGTGLLLIAMGIIL 308 (355)
Q Consensus 251 l~~~~~~~~i~~~sa~t~svv-~~~k~v~~i~ls~l~f~~~~t~~~~iG~~lv~~Gv~l 308 (355)
.|.+.+++.+++.+=..+..+ +.+.-+++.+.++++.+|..+...++|++++++|+.+
T Consensus 53 ~GSv~f~~~L~~~dlSlavPi~Nsl~fvfT~l~g~~lge~~~~~~~~~G~~Li~~Gv~L 111 (113)
T PF10639_consen 53 SGSVLFFLLLGSADLSLAVPIANSLAFVFTALTGWLLGEEVISRRTWLGMALILAGVAL 111 (113)
T ss_pred HHHHHHHHHHhcCCceeeehHHhHHHHHHHHHHHHHhcCcccchhHHHHHHHHHcCeee
Confidence 556777788888876555544 5788899999999998888999999999999999864
No 96
>KOG1581 consensus UDP-galactose transporter related protein [Carbohydrate transport and metabolism]
Probab=89.41 E-value=4.8 Score=37.74 Aligned_cols=75 Identities=9% Similarity=0.156 Sum_probs=67.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHhhchHHHHHHHhHHHHHHHHHHHHHhCCCcccchhhhHHHHHHHHHHHhccCCCC
Q 018484 242 LVFEAMATFVGQVSVLSLIALFGAATTAMITTARKAVTLFLSYLIFTKPLTEQHGTGLLLIAMGIILKMLPENKA 316 (355)
Q Consensus 242 l~l~~~~~~l~~~~~~~~i~~~sa~t~svv~~~k~v~~i~ls~l~f~~~~t~~~~iG~~lv~~Gv~ly~~~k~~~ 316 (355)
-...++...++..+.+-.++++|=-|..+.-..|-+..++.+.++.+.+.++...+-..++-.|+.++.+.+..+
T Consensus 86 y~~is~tn~~s~~~~yeaLKyvSyPtq~LaKscKmIPVmlmg~Lvy~~ky~~~eYl~~~LIs~GvsiF~l~~~s~ 160 (327)
T KOG1581|consen 86 YSLISFTNTLSSWCGYEALKYVSYPTQTLAKSCKMIPVMLMGTLVYGRKYSSFEYLVAFLISLGVSIFSLFPNSD 160 (327)
T ss_pred HhHHHHHhhcchHHHHHHHHhccchHHHHHHHhhhhHHHHHHHHHhcCccCcHHHHHHHHHHhheeeEEEecCCC
Confidence 333467777788889999999999999999999999999999999999999999999999999999999887665
No 97
>COG4975 GlcU Putative glucose uptake permease [Carbohydrate transport and metabolism]
Probab=88.69 E-value=0.13 Score=46.64 Aligned_cols=81 Identities=21% Similarity=0.256 Sum_probs=54.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhhchHHHHHHHhH-HHHHHHHHHHHHhCCCcccchh----hhHHHHHHHHHHHhccCCC
Q 018484 241 VLVFEAMATFVGQVSVLSLIALFGAATTAMITTA-RKAVTLFLSYLIFTKPLTEQHG----TGLLLIAMGIILKMLPENK 315 (355)
Q Consensus 241 ~l~l~~~~~~l~~~~~~~~i~~~sa~t~svv~~~-k~v~~i~ls~l~f~~~~t~~~~----iG~~lv~~Gv~ly~~~k~~ 315 (355)
.-+++++.-.+||...|..++..|...+..+.+- .-+.+.+++++.|||--++.+. +..++.+.|+.+.++.++.
T Consensus 61 v~~isG~~Ws~GQ~~Qfka~~~iGVSkamPiStG~QLVg~sL~gV~~f~EW~t~~~~IlG~iAliliviG~~lTs~~~~~ 140 (288)
T COG4975 61 VGFISGAFWSFGQANQFKAIQLIGVSKAMPISTGMQLVGTSLFGVFVFHEWTTPTQIILGFIALILIVIGIYLTSKQDRN 140 (288)
T ss_pred HHHHhhhHhhhhhhhhhhheeeeeeeccccccchhhHhhceeeeEEEEeccCcchhHHHHHHHHHHHHHhheEeeeeccc
Confidence 3344455556888888888888776665555443 4566789999999998887653 4456777777776655544
Q ss_pred CCCCCC
Q 018484 316 APANNR 321 (355)
Q Consensus 316 ~~~~~~ 321 (355)
+|+.+.
T Consensus 141 nk~~~~ 146 (288)
T COG4975 141 NKEEEN 146 (288)
T ss_pred cccccC
Confidence 443333
No 98
>KOG1580 consensus UDP-galactose transporter related protein [Carbohydrate transport and metabolism]
Probab=88.45 E-value=0.65 Score=41.83 Aligned_cols=67 Identities=18% Similarity=0.198 Sum_probs=57.9
Q ss_pred HHHHHHHHHHHHHHHhhchHHHHHHHhHHHHHHHHHHHHHhCCCcccchhhhHHHHHHHHHHHhccC
Q 018484 247 MATFVGQVSVLSLIALFGAATTAMITTARKAVTLFLSYLIFTKPLTEQHGTGLLLIAMGIILKMLPE 313 (355)
Q Consensus 247 ~~~~l~~~~~~~~i~~~sa~t~svv~~~k~v~~i~ls~l~f~~~~t~~~~iG~~lv~~Gv~ly~~~k 313 (355)
..-.++.++.+..++..+--|..+--..||+-..++|+++.++.-+|....-..++..|+.++.|..
T Consensus 93 ~sYLlAMVssN~Alq~vpYPTqVlgKScKPIPVMilGVl~~~KsY~w~kY~cVL~IV~GValFmYK~ 159 (337)
T KOG1580|consen 93 ASYLLAMVSSNQALQYVPYPTQVLGKSCKPIPVMILGVLFAHKSYHWRKYCCVLMIVVGVALFMYKE 159 (337)
T ss_pred HHHHHHHHhccchhcccCCcHHHhcccCCCcceeeeehhhhcccccHHHHHHHHHHHHHHHHhhccc
Confidence 3334556777888888888888888999999999999999999999999999999999999988753
No 99
>KOG3912 consensus Predicted integral membrane protein [General function prediction only]
Probab=87.20 E-value=2 Score=39.81 Aligned_cols=67 Identities=15% Similarity=0.284 Sum_probs=56.0
Q ss_pred HHHHHHHHHHHHHHHhhchHHHHHHHhHHHHHHHHHHHHHhCCCcccchhhhHHHHHHHHHHHhccC
Q 018484 247 MATFVGQVSVLSLIALFGAATTAMITTARKAVTLFLSYLIFTKPLTEQHGTGLLLIAMGIILKMLPE 313 (355)
Q Consensus 247 ~~~~l~~~~~~~~i~~~sa~t~svv~~~k~v~~i~ls~l~f~~~~t~~~~iG~~lv~~Gv~ly~~~k 313 (355)
+|-..|....|..+..++|....+.--.--+++-++|..++++.++..||+|+..+..|+..-....
T Consensus 94 l~Di~gsslm~vgL~lTsASsfQMlRGaviIFvglfst~~Ln~ti~~~qWl~i~fv~lGlviVg~~d 160 (372)
T KOG3912|consen 94 LCDIAGSSLMYVGLNLTSASSFQMLRGAVIIFVGLFSTMFLNRTITGRQWLGILFVSLGLVIVGSLD 160 (372)
T ss_pred HHHHhhhHHHHHHHHHhhHHHHHHhhcchhhhhHHHHHHHHhcccchhhHHHHHHHHhhhheeeeee
Confidence 3444556667777888889888888888889999999999999999999999999999998766543
No 100
>KOG4314 consensus Predicted carbohydrate/phosphate translocator [General function prediction only]
Probab=86.43 E-value=0.52 Score=41.28 Aligned_cols=64 Identities=14% Similarity=0.178 Sum_probs=57.9
Q ss_pred HHHHHHHHHHHhhchHHHHHHHhHHHHHHHHHHHHHhCCCcccchhhhHHHHHHHHHHHhccCC
Q 018484 251 VGQVSVLSLIALFGAATTAMITTARKAVTLFLSYLIFTKPLTEQHGTGLLLIAMGIILKMLPEN 314 (355)
Q Consensus 251 l~~~~~~~~i~~~sa~t~svv~~~k~v~~i~ls~l~f~~~~t~~~~iG~~lv~~Gv~ly~~~k~ 314 (355)
..|+.+...+++.+|+-++-+...++.+..+++++.+||.+....++...+.+.|+++-+|...
T Consensus 65 ~aNY~Yl~AL~~is~s~asai~~CNaAFVfiLa~IVL~D~~~~~kIlaailAI~GiVmiay~DN 128 (290)
T KOG4314|consen 65 GANYLYLLALKKISASDASAIFACNAAFVFILAIIVLGDRFMGFKILAAILAIGGIVMIAYADN 128 (290)
T ss_pred cCCcHHHHHHHhcChhhhHHHHHhhHHHHHHHHHHHhccchhhhhHHHHHHHhCcEEEEEeccc
Confidence 4577788899999999999999999999999999999999999999999999999988776543
No 101
>PF07168 Ureide_permease: Ureide permease; InterPro: IPR009834 This entry represents ureide permease, which transports a wide spectrum of oxo derivatives of heterocyclic nitrogen compounds, including allantoin, uric acid and xanthine, but not adenine. Transport is dependent on glucose and a proton gradient [].
Probab=85.03 E-value=0.52 Score=43.98 Aligned_cols=68 Identities=16% Similarity=0.221 Sum_probs=37.4
Q ss_pred HHHHHHHHHHHHHHHHHHHhhchHHHHHHHhHHHHHHHHHHHHH---hCCCcc--cchhhhHHHHHHHHHHHhccC
Q 018484 243 VFEAMATFVGQVSVLSLIALFGAATTAMITTARKAVTLFLSYLI---FTKPLT--EQHGTGLLLIAMGIILKMLPE 313 (355)
Q Consensus 243 ~l~~~~~~l~~~~~~~~i~~~sa~t~svv~~~k~v~~i~ls~l~---f~~~~t--~~~~iG~~lv~~Gv~ly~~~k 313 (355)
++.++.--++|++.-+.+...|-..+-+++. -+++++|..+ .+.+.+ ..-+.|++++++++++-....
T Consensus 76 ~aGGvvfnlgNillq~aia~aGmSVafpvg~---glalVlGv~~NYfld~~~n~a~iLF~GV~cf~iAI~lga~ah 148 (336)
T PF07168_consen 76 MAGGVVFNLGNILLQAAIAFAGMSVAFPVGI---GLALVLGVTLNYFLDPKINRAEILFPGVACFLIAIILGAAAH 148 (336)
T ss_pred HHhhHhhhhHHHHHHHHHHHhcceeeeeeec---ceEEEEeeeeeeeccCCCCCceEEEccHHHHHHHHHHHHHHH
Confidence 3334444477777777766666444333332 1333334332 244444 255678999888888866543
No 102
>KOG1444 consensus Nucleotide-sugar transporter VRG4/SQV-7 [Carbohydrate transport and metabolism; Posttranslational modification, protein turnover, chaperones; Intracellular trafficking, secretion, and vesicular transport]
Probab=79.75 E-value=31 Score=32.67 Aligned_cols=138 Identities=8% Similarity=0.046 Sum_probs=81.0
Q ss_pred HHHHHHHHHHHHhHHHHHHHHHhhCCCCChhhHHHHHHHHhHHHHHHHHHhhchHHHHHHHHhhhhHHHHHHHHHHHHHH
Q 018484 171 VLMISGALVMDSFLGNLQEVIFTVNPDTTQMEMLFCSTVVGLPFLLVPMILTGELVRAWNSCSQHLYVYGVLVFEAMATF 250 (355)
Q Consensus 171 ~~l~l~s~~~~a~~~v~~~~l~~~~~~~~~~~l~~~~~l~~~~~ll~~~~~~ge~~~~~~~~~~~~~~~~~l~l~~~~~~ 250 (355)
...++..++++.+..+..|.....++-....-++.+.++.+.......-. .| ..+..++.++.++.|..+- +.-+
T Consensus 14 l~sa~~Y~~sS~lm~vvNK~vls~y~f~~~l~l~~~Q~l~s~~~v~~lk~-~~-lv~~~~l~~~~~kk~~P~~---~lf~ 88 (314)
T KOG1444|consen 14 LLSALFYCLSSILMTVVNKIVLSSYNFPMGLLLMLLQSLASVLVVLVLKR-LG-LVNFRPLDLRTAKKWFPVS---LLFV 88 (314)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHHHHHHHHHH-hc-eeecCCcChHHHHHHccHH---HHHH
Confidence 33444455555555556666666654222344555777665544322111 11 0000011112222221111 1111
Q ss_pred HHHHHHHHHHHhhchHHHHHHHhHHHHHHHHHHHHHhCCCcccchhhhHHHHHHHHHHHhccC
Q 018484 251 VGQVSVLSLIALFGAATTAMITTARKAVTLFLSYLIFTKPLTEQHGTGLLLIAMGIILKMLPE 313 (355)
Q Consensus 251 l~~~~~~~~i~~~sa~t~svv~~~k~v~~i~ls~l~f~~~~t~~~~iG~~lv~~Gv~ly~~~k 313 (355)
...+.....+++.+--+..+.....++.+.+...++|+..++...|.......+|...+....
T Consensus 89 ~~i~t~~~slk~lnVpm~tv~kn~tii~~ai~E~lf~~~~~~~~v~~Sv~~m~~~s~~~~~~d 151 (314)
T KOG1444|consen 89 GMLFTGSKSLKYLNVPMFTVFKNLTIILTAIGEVLFFGKRPSNKVWASVFAMIIGSVAAAFTD 151 (314)
T ss_pred HHHHHccccccccCchHHHHHhhchHHHHHHhHHhhcCcCchhhHHHHHHHHHHHHHhhcccc
Confidence 223445567888888889999999999999999999999999999999999999988876544
No 103
>PF04657 DUF606: Protein of unknown function, DUF606; InterPro: IPR006750 This family contains uncharacterised bacterial proteins.
Probab=78.19 E-value=37 Score=28.02 Aligned_cols=113 Identities=13% Similarity=0.171 Sum_probs=67.7
Q ss_pred HHHhhhhhccCCCCchhHHHHHHHHHHHHHH----HHhcccC--CCCCCchHHHHHHHHHHHhhHHHHHHHhhCCChhHH
Q 018484 39 GICEEYVYNRLQFSYGWYFTFVQGFVYLVLI----YLQGFTT--KQMVNPWKTYVKLSAVLMGSHGLTKGSLAFLNYPAQ 112 (355)
Q Consensus 39 ~~~~k~i~~~~~f~~p~~lt~~Q~~~~~~~~----~~~~~~~--~~~~~~~~~~~~~s~~~~~~~~l~~~sL~~~s~~~~ 112 (355)
+.+|-++-+..+ .|+.-+++.+.+..+.. ...+..+ ..++.||+.|. -+++-.....+...+...+.++..
T Consensus 17 ~~~N~~L~~~~g--s~~~as~i~~~~G~i~~~i~~~~~~~~~~~~~~~~p~w~~l-GG~lG~~~V~~~~~~vp~lG~~~~ 93 (138)
T PF04657_consen 17 AAFNGQLGKALG--SPLVASFISFGVGFILLLIILLITGRPSLASLSSVPWWAYL-GGLLGVFFVLSNIILVPRLGAALT 93 (138)
T ss_pred HHHHHHHHHHhC--ccHHHHHHHHHHHHHHHHHHHHHhcccccchhccCChHHhc-cHHHHHHHHHHHHHHhhhhhHHHH
Confidence 344444433222 46666666655543321 1222111 12356777665 455555666777888888888766
Q ss_pred HHHh-hcchHHHHHHHhh--hcCCccccChhHHHHHHHHHHHHHH
Q 018484 113 IMFK-STKVLPVMIMGAF--IPGLRRKYPAHEYVAALLLVFGLIL 154 (355)
Q Consensus 113 ~v~k-s~~pi~v~l~~~l--~~gl~~~~s~~~~~~l~li~~Gv~l 154 (355)
+++- ....+.-++++.+ +.--++++++++.+++.++++|+.+
T Consensus 94 ~~l~~~GQl~~sl~iD~fG~fg~~~~~~~~~r~lG~~l~i~Gv~L 138 (138)
T PF04657_consen 94 TILIVAGQLIASLLIDHFGLFGAPKRPFSLRRILGLALMIAGVIL 138 (138)
T ss_pred HHHHHHHHHHHHHHHHHccccCCCCCCCCHHHHHHHHHHHHHHhC
Confidence 5544 4566666777764 2113788999999999999999864
No 104
>KOG1583 consensus UDP-N-acetylglucosamine transporter [Carbohydrate transport and metabolism]
Probab=71.86 E-value=32 Score=32.07 Aligned_cols=121 Identities=12% Similarity=0.181 Sum_probs=65.4
Q ss_pred HHHHHHhhhhhccCCCCchhHHHHHHHHHHHHHHHH---------hcccCCCCCCchHH-HHHHHHHHH-hhHHHHHHHh
Q 018484 36 LVNGICEEYVYNRLQFSYGWYFTFVQGFVYLVLIYL---------QGFTTKQMVNPWKT-YVKLSAVLM-GSHGLTKGSL 104 (355)
Q Consensus 36 ~~~~~~~k~i~~~~~f~~p~~lt~~Q~~~~~~~~~~---------~~~~~~~~~~~~~~-~~~~s~~~~-~~~~l~~~sL 104 (355)
...|++||..++++|-+....+-..|++.--.++++ ..+...+-..|... -+|....+. .....++.+.
T Consensus 177 a~mgiyqE~~Y~kyGKh~~EalFytH~LsLP~Flf~~~div~~~~~~~~se~~~~p~~g~~vP~~~~yLl~n~L~Qy~Ci 256 (330)
T KOG1583|consen 177 AYMGIYQETTYQKYGKHWKEALFYTHFLSLPLFLFMGDDIVSHWRLAFKSESYLIPLLGFKVPSMWVYLLFNVLTQYFCI 256 (330)
T ss_pred HHHHHHHHHHHHHhcCChHHHHHHHHHhccchHHHhcchHHHHHHHHhcCcceeccccCccccHHHHHHHHHHHHHHHHH
Confidence 457899999999888777777766676542112111 11111111111111 022222222 1222334444
Q ss_pred hCCChh-------HHHHHhhcchHHHHHHHhhhcCCccccChhHHHHHHHHHHHHHHHhcc
Q 018484 105 AFLNYP-------AQIMFKSTKVLPVMIMGAFIPGLRRKYPAHEYVAALLLVFGLILFTMA 158 (355)
Q Consensus 105 ~~~s~~-------~~~v~ks~~pi~v~l~~~l~~gl~~~~s~~~~~~l~li~~Gv~l~~~~ 158 (355)
+.+..= +.++.-...=.+..+++.+. ++..+++..|++..++..|..+++..
T Consensus 257 kgVy~L~te~~sLTVTlvltlRKFvSLl~Siiy--F~Npft~~h~lGa~lVF~Gt~~fa~~ 315 (330)
T KOG1583|consen 257 KGVYILTTETSSLTVTLVLTLRKFVSLLFSIIY--FENPFTPWHWLGAALVFFGTLLFANV 315 (330)
T ss_pred HhhhhhhceecceEEEEeeeHHHHHHHhheeeE--ecCCCCHHHHHHHHHHHHHHHHHHHH
Confidence 433221 11222222335556777777 89999999999999999999888543
No 105
>PF05297 Herpes_LMP1: Herpesvirus latent membrane protein 1 (LMP1); InterPro: IPR007961 This family consists of several latent membrane protein 1 or LMP1s mostly from Epstein-Barr virus (strain GD1) (HHV-4) (Human herpesvirus 4). LMP1 of HHV-4 is a 62-65 kDa plasma membrane protein possessing six membrane spanning regions, a short cytoplasmic N terminus and a long cytoplasmic carboxy tail of 200 amino acids. HHV-4 virus latent membrane protein 1 (LMP1) is essential for HHV-4 mediated transformation and has been associated with several cases of malignancies. HHV-4-like viruses in Macaca fascicularis (Cynomolgus monkeys) have been associated with high lymphoma rates in immunosuppressed monkeys [].; GO: 0019087 transformation of host cell by virus, 0016021 integral to membrane; PDB: 1CZY_E 1ZMS_B.
Probab=70.58 E-value=1.4 Score=40.71 Aligned_cols=95 Identities=11% Similarity=0.113 Sum_probs=0.0
Q ss_pred CChhHHHHHhhcchHHHHHHHhhhcCCccccCh-hHHHHHHHHHHHHHHHhccCCCCCCCchhhHHHHHHHHHHHHHhHH
Q 018484 107 LNYPAQIMFKSTKVLPVMIMGAFIPGLRRKYPA-HEYVAALLLVFGLILFTMADAQTSPNFSLIGVLMISGALVMDSFLG 185 (355)
Q Consensus 107 ~s~~~~~v~ks~~pi~v~l~~~l~~gl~~~~s~-~~~~~l~li~~Gv~l~~~~~~~~~~~~~~~G~~l~l~s~~~~a~~~ 185 (355)
.+-+..+++.|...+.++++-.++. ||||.=- .-.++++++.+-..+.+.-. ...+.-+.|+++.++.+++.-..+
T Consensus 47 ~t~~a~~vl~sfAvvliiIIiIIml-F~RrLLCPLGlLCiilimi~lLv~~L~t--LtGQ~LF~Gi~~l~l~~lLaL~vW 123 (381)
T PF05297_consen 47 LTQGALTVLYSFAVVLIIIIIIIML-FKRRLLCPLGLLCIILIMIVLLVSMLWT--LTGQTLFVGIVILFLCCLLALGVW 123 (381)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred cccchHHHHHHHHHHHHHHHHHHHH-HHHhhcCcchHHHHHHHHHHHHHHHHHH--hhccHHHHHHHHHHHHHHHHHHHH
Confidence 3444445555544444444333332 4555433 23455555554444433321 122345788887776666554456
Q ss_pred HHHHHHHhhCCCCChhhHHHH
Q 018484 186 NLQEVIFTVNPDTTQMEMLFC 206 (355)
Q Consensus 186 v~~~~l~~~~~~~~~~~l~~~ 206 (355)
.|. .++++++. +.|.++.+
T Consensus 124 ~Ym-~lLr~~GA-s~WtiLaF 142 (381)
T PF05297_consen 124 FYM-WLLRELGA-SFWTILAF 142 (381)
T ss_dssp ---------------------
T ss_pred HHH-HHHHHhhh-HHHHHHHH
Confidence 664 35666642 45555443
No 106
>KOG1623 consensus Multitransmembrane protein [General function prediction only]
Probab=70.26 E-value=16 Score=33.39 Aligned_cols=27 Identities=26% Similarity=0.202 Sum_probs=18.0
Q ss_pred HHHHhCCCcccchhhhHHHHHHHHHHH
Q 018484 283 SYLIFTKPLTEQHGTGLLLIAMGIILK 309 (355)
Q Consensus 283 s~l~f~~~~t~~~~iG~~lv~~Gv~ly 309 (355)
|.+..+--+-..+.+|..+.+.=..+|
T Consensus 178 Glli~D~~IaipN~iG~~l~~~QL~Ly 204 (243)
T KOG1623|consen 178 GLLIKDFFIAIPNVLGFLLGLIQLILY 204 (243)
T ss_pred HHHhcCeEEEcccHHHHHHHHHHHHHh
Confidence 444422233356789999988888888
No 107
>PF06084 Cytomega_TRL10: Cytomegalovirus TRL10 protein; InterPro: IPR009284 This family consists of several Cytomegalovirus TRL10 proteins. TRL10 represents a structural component of the virus particle and like the other HCMV envelope glycoproteins, is present in a disulphide-linked complex [].
Probab=68.63 E-value=2.2 Score=33.77 Aligned_cols=22 Identities=18% Similarity=0.234 Sum_probs=14.7
Q ss_pred CCCCChhhhhccccCCcchhcc
Q 018484 330 RRKSPEPEEKSLVETNGEVEEK 351 (355)
Q Consensus 330 ~~~~~~~~~~~~~~~~~~~~~~ 351 (355)
||.|-+|....-+++|||+|+.
T Consensus 127 rq~d~~p~~~~~~~dd~e~ed~ 148 (150)
T PF06084_consen 127 RQNDNSPPIEPNGTDDEEDEDD 148 (150)
T ss_pred cccCCCCcccCCCCCccccccc
Confidence 4456667777777777777654
No 108
>PF10225 DUF2215: Uncharacterized conserved protein (DUF2215); InterPro: IPR024233 This entry represents a domain that is found in a number of different proteins, including a family of transmembrane proteins.
Probab=68.39 E-value=97 Score=28.40 Aligned_cols=39 Identities=15% Similarity=-0.006 Sum_probs=25.0
Q ss_pred HHHHHHHHhhchHHHHHHHhHHHHHHHHHHHHHhCCCcc
Q 018484 254 VSVLSLIALFGAATTAMITTARKAVTLFLSYLIFTKPLT 292 (355)
Q Consensus 254 ~~~~~~i~~~sa~t~svv~~~k~v~~i~ls~l~f~~~~t 292 (355)
+..+.+-++-++.-......++-.+-++.-.+++.-.-.
T Consensus 110 vsf~vcy~~gp~~~~rs~~~v~W~Lqligl~lI~~ss~~ 148 (249)
T PF10225_consen 110 VSFAVCYRYGPPVDPRSRNFVKWALQLIGLVLIYFSSQD 148 (249)
T ss_pred HHHHhhcccCCCccHhHHHHHHHHHHHHHHHHHHHHcCc
Confidence 444455556666667777777777777777777754333
No 109
>KOG2922 consensus Uncharacterized conserved protein [Function unknown]
Probab=68.00 E-value=1.1 Score=42.32 Aligned_cols=62 Identities=15% Similarity=0.207 Sum_probs=53.0
Q ss_pred HHHHHHHHHHHHhhchHHHHHHHhHHHHHHHHHHHHHhCCCcccchhhhHHHHHHHHHHHhc
Q 018484 250 FVGQVSVLSLIALFGAATTAMITTARKAVTLFLSYLIFTKPLTEQHGTGLLLIAMGIILKML 311 (355)
Q Consensus 250 ~l~~~~~~~~i~~~sa~t~svv~~~k~v~~i~ls~l~f~~~~t~~~~iG~~lv~~Gv~ly~~ 311 (355)
.+|....|..-..-++...+..+.+.-+.+.+++..+.+|.+++...+|.+++++|...-..
T Consensus 75 ~vGei~NFaAYaFAPasLVtPLGAlsvi~saila~~~L~Ekl~~~g~lGc~l~v~Gst~iV~ 136 (335)
T KOG2922|consen 75 IVGEIANFAAYAFAPASLVTPLGALSVIISAILASFFLKEKLNLLGILGCVLCVVGSTTIVI 136 (335)
T ss_pred HHHhHhhHHHHhhchHhhhccchhHHHHHHHHHHHHHHHHHHHHhhhhheeEEecccEEEEE
Confidence 36677777777777888888888888899999999999999999999999999999876443
No 110
>PLN00028 nitrate transmembrane transporter; Provisional
Probab=64.02 E-value=1.6e+02 Score=29.33 Aligned_cols=63 Identities=6% Similarity=0.009 Sum_probs=27.6
Q ss_pred chHHHHHHHhHHHHHHHHHHHHHhC-CC--cccc-hhhhHHHHHHHHHHHhccCCCCCCCCCCCCcCC
Q 018484 264 GAATTAMITTARKAVTLFLSYLIFT-KP--LTEQ-HGTGLLLIAMGIILKMLPENKAPANNRPNSHNN 327 (355)
Q Consensus 264 sa~t~svv~~~k~v~~i~ls~l~f~-~~--~t~~-~~iG~~lv~~Gv~ly~~~k~~~~~~~~~~~~~~ 327 (355)
.+...++.+..-.+...+.++++-. .. .+.. .+.|+.. ++|.++..+.+..+...+..+..|+
T Consensus 381 ~g~~~g~~~~~g~lg~~i~~~l~~~~~~~~y~~~f~~~~~~~-~i~~~~~~~~~~~~~~~~~~~~~~~ 447 (476)
T PLN00028 381 LGVISGLTGAGGNVGAVLTQLLFFTGSSYSTETGISLMGVMI-IACTLPVAFIHFPQWGGMFFGPSKD 447 (476)
T ss_pred chhhhhhhhccccHHHHHHHHHHHhcCCccHhhHHHHHHHHH-HHHHHHHHheeccchhhhhcCCCcc
Confidence 3344555555545555555554321 11 2222 2334444 4445555555444443333444444
No 111
>TIGR00910 2A0307_GadC glutamate:gamma-aminobutyrate antiporter. Lowered cutoffs from 1000/500 to 800/300, promoted from subfamily to equivalog, and put into a Genome Property DHH 9/1/2009
Probab=63.21 E-value=1.8e+02 Score=29.55 Aligned_cols=16 Identities=25% Similarity=0.351 Sum_probs=8.7
Q ss_pred HHHHHHHHhccCCCCC
Q 018484 302 IAMGIILKMLPENKAP 317 (355)
Q Consensus 302 v~~Gv~ly~~~k~~~~ 317 (355)
++.+.++|...++|.|
T Consensus 450 ~~~~~~~y~~~~~~~~ 465 (507)
T TIGR00910 450 AALPFIIYALHDKKGH 465 (507)
T ss_pred HHHHHHHHHHhccccc
Confidence 3355566666555543
No 112
>TIGR00939 2a57 Equilibrative Nucleoside Transporter (ENT).
Probab=63.18 E-value=33 Score=34.22 Aligned_cols=22 Identities=18% Similarity=0.150 Sum_probs=10.0
Q ss_pred HHHHHHHHHHHHHHHHhhchHH
Q 018484 246 AMATFVGQVSVLSLIALFGAAT 267 (355)
Q Consensus 246 ~~~~~l~~~~~~~~i~~~sa~t 267 (355)
+++..+.|-..+.....+++..
T Consensus 117 g~~~~~~q~s~~gla~~fp~~~ 138 (437)
T TIGR00939 117 NSGMALLQGSLFGLAGVFPSTY 138 (437)
T ss_pred HhhhhhhcccchhhcccCCHHH
Confidence 3444444544444444444433
No 113
>PF14851 FAM176: FAM176 family
Probab=61.77 E-value=11 Score=31.73 Aligned_cols=16 Identities=25% Similarity=0.434 Sum_probs=8.7
Q ss_pred hhHHHHHHHHHHHhcc
Q 018484 297 TGLLLIAMGIILKMLP 312 (355)
Q Consensus 297 iG~~lv~~Gv~ly~~~ 312 (355)
+|.++.++-++.-.-.
T Consensus 32 ~GLlLtLcllV~risc 47 (153)
T PF14851_consen 32 AGLLLTLCLLVIRISC 47 (153)
T ss_pred HHHHHHHHHHHhhhee
Confidence 4555555555555444
No 114
>PRK06638 NADH:ubiquinone oxidoreductase subunit J; Provisional
Probab=61.28 E-value=1.2e+02 Score=26.80 Aligned_cols=23 Identities=26% Similarity=0.361 Sum_probs=15.7
Q ss_pred HHHHHhCCCcccchhhhHHHHHH
Q 018484 282 LSYLIFTKPLTEQHGTGLLLIAM 304 (355)
Q Consensus 282 ls~l~f~~~~t~~~~iG~~lv~~ 304 (355)
+|..+|++..=+...+|+.|..+
T Consensus 135 iG~~L~t~y~l~fe~~silLLvA 157 (198)
T PRK06638 135 IGILLFTDYLLPFELASVLLLVA 157 (198)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHH
Confidence 36667777777778888866443
No 115
>PHA03049 IMV membrane protein; Provisional
Probab=58.96 E-value=12 Score=26.62 Aligned_cols=21 Identities=14% Similarity=0.176 Sum_probs=15.9
Q ss_pred hhhhHHHHHHHHHHHhccCCC
Q 018484 295 HGTGLLLIAMGIILKMLPENK 315 (355)
Q Consensus 295 ~~iG~~lv~~Gv~ly~~~k~~ 315 (355)
-.+++..++.|.++|....++
T Consensus 6 ~l~iICVaIi~lIvYgiYnkk 26 (68)
T PHA03049 6 ILVIICVVIIGLIVYGIYNKK 26 (68)
T ss_pred HHHHHHHHHHHHHHHHHHhcc
Confidence 457788889999999766544
No 116
>KOG2766 consensus Predicted membrane protein [Function unknown]
Probab=58.83 E-value=3.5 Score=37.81 Aligned_cols=70 Identities=10% Similarity=0.212 Sum_probs=58.7
Q ss_pred HHHHHHHHHHHHHHHHhhchHHHHHHHhHHHHHHHHHHHHHhCCCcccchhhhHHHHHHHHHHHhccCCC
Q 018484 246 AMATFVGQVSVLSLIALFGAATTAMITTARKAVTLFLSYLIFTKPLTEQHGTGLLLIAMGIILKMLPENK 315 (355)
Q Consensus 246 ~~~~~l~~~~~~~~i~~~sa~t~svv~~~k~v~~i~ls~l~f~~~~t~~~~iG~~lv~~Gv~ly~~~k~~ 315 (355)
++.-.=+|++....-++++-+.....-+-..+...+++|++++.+--+.++.|.++++.|+.+-......
T Consensus 85 a~~DVEaNy~vV~AyQyTsmtSi~lLDcwaip~v~~lsw~fLktrYrlmki~gV~iCi~GvvmvV~sDV~ 154 (336)
T KOG2766|consen 85 AFVDVEANYFVVKAYQYTSMTSIMLLDCWAIPCVLVLSWFFLKTRYRLMKISGVVICIVGVVMVVFSDVH 154 (336)
T ss_pred eEEeecccEEEeeehhhcchHHHHHHHHhhhHHHHHHHHHHHHHHHhhheeeeEEeEecceEEEEEeeec
Confidence 3444456777777888899899999999999999999999999999999999999999999887665543
No 117
>TIGR00905 2A0302 transporter, basic amino acid/polyamine antiporter (APA) family. This family includes several families of antiporters that, rather commonly, are encoded next to decarboxylases that convert one of the antiporter substrates into the other. This arrangement allows a cycle that can remove proteins from the cytoplasm and thereby protect against acidic conditions.
Probab=58.72 E-value=2e+02 Score=28.71 Aligned_cols=23 Identities=26% Similarity=0.238 Sum_probs=17.6
Q ss_pred chhhhHHHHHHHHHHHhccCCCC
Q 018484 294 QHGTGLLLIAMGIILKMLPENKA 316 (355)
Q Consensus 294 ~~~iG~~lv~~Gv~ly~~~k~~~ 316 (355)
..+.|.++...|..+|.+.++++
T Consensus 417 ~~~~~~~~~~~g~~~y~~~~~~~ 439 (473)
T TIGR00905 417 YLLLGFILYAPGIIFYGRARKER 439 (473)
T ss_pred HHHHHHHHHHHHHHHHHHHHHhc
Confidence 45678999999999998765543
No 118
>COG5070 VRG4 Nucleotide-sugar transporter [Carbohydrate transport and metabolism / Posttranslational modification, protein turnover, chaperones / Intracellular trafficking and secretion]
Probab=57.32 E-value=14 Score=33.20 Aligned_cols=66 Identities=11% Similarity=0.109 Sum_probs=48.0
Q ss_pred HHHHHhhHHHHHHHhhCCChhHHHHHhhcchHHHHHHHhhhcCCccccChhHHHHHHHHHHHHHHHhc
Q 018484 90 SAVLMGSHGLTKGSLAFLNYPAQIMFKSTKVLPVMIMGAFIPGLRRKYPAHEYVAALLLVFGLILFTM 157 (355)
Q Consensus 90 s~~~~~~~~l~~~sL~~~s~~~~~v~ks~~pi~v~l~~~l~~gl~~~~s~~~~~~l~li~~Gv~l~~~ 157 (355)
|++..+..+++-|+++-++..++.+.-+..-.+..+.|.++ +.++.++....++++..+..++.+.
T Consensus 231 gl~svgiSy~saWcvrVtSSTtySMvGALNKlp~alaGlvf--fdap~nf~si~sillGflsg~iYav 296 (309)
T COG5070 231 GLCSVGISYCSAWCVRVTSSTTYSMVGALNKLPIALAGLVF--FDAPVNFLSIFSILLGFLSGAIYAV 296 (309)
T ss_pred HHHHhhhhhccceeEeehhhhHHHHHHHhhhChHHHhhhhh--cCCchhHHHHHHHHHHHHHHHHHHH
Confidence 45666666777788888888888888888777888888777 7777777777776665555554443
No 119
>PF08507 COPI_assoc: COPI associated protein; InterPro: IPR013714 Proteins in this family co-localise with COPI vesicle coat proteins []. In yeast it is a Golgi membrane protein involved in vesicular trafficking, interacting with TVP18 [].
Probab=56.58 E-value=18 Score=29.72 Aligned_cols=12 Identities=50% Similarity=0.794 Sum_probs=5.8
Q ss_pred hhhHHHHHHHHH
Q 018484 296 GTGLLLIAMGII 307 (355)
Q Consensus 296 ~iG~~lv~~Gv~ 307 (355)
++|..+...|++
T Consensus 90 i~g~~~~~~G~~ 101 (136)
T PF08507_consen 90 IIGLLLFLVGVI 101 (136)
T ss_pred HHHHHHHHHHHH
Confidence 345555555543
No 120
>PF06679 DUF1180: Protein of unknown function (DUF1180); InterPro: IPR009565 This entry consists of several hypothetical eukaryotic proteins thought to be membrane proteins. Their function is unknown.
Probab=56.18 E-value=9.3 Score=32.64 Aligned_cols=7 Identities=43% Similarity=0.482 Sum_probs=3.2
Q ss_pred cCCcchh
Q 018484 343 ETNGEVE 349 (355)
Q Consensus 343 ~~~~~~~ 349 (355)
++|+|||
T Consensus 145 ~~ddede 151 (163)
T PF06679_consen 145 EEDDEDE 151 (163)
T ss_pred CCCcccc
Confidence 4444444
No 121
>PRK13108 prolipoprotein diacylglyceryl transferase; Reviewed
Probab=56.01 E-value=1.1e+02 Score=30.91 Aligned_cols=23 Identities=9% Similarity=0.121 Sum_probs=19.2
Q ss_pred cccchhhhHHHHHHHHHHHhccC
Q 018484 291 LTEQHGTGLLLIAMGIILKMLPE 313 (355)
Q Consensus 291 ~t~~~~iG~~lv~~Gv~ly~~~k 313 (355)
++..||+++.++++|+++..+.+
T Consensus 254 l~~~Q~lSl~~il~gl~~~~~~~ 276 (460)
T PRK13108 254 IRINSFTSTFVFIGAVVYIILAP 276 (460)
T ss_pred ccHHHHHHHHHHHHHHHHHHHhh
Confidence 68889999999999988776544
No 122
>COG2271 UhpC Sugar phosphate permease [Carbohydrate transport and metabolism]
Probab=54.83 E-value=17 Score=35.96 Aligned_cols=35 Identities=17% Similarity=0.289 Sum_probs=21.2
Q ss_pred HHHHhC-CCcccchhhhHHHHHHHHHHHhccCCCCC
Q 018484 283 SYLIFT-KPLTEQHGTGLLLIAMGIILKMLPENKAP 317 (355)
Q Consensus 283 s~l~f~-~~~t~~~~iG~~lv~~Gv~ly~~~k~~~~ 317 (355)
+++.++ +.-.....-|++-++.|++.+-..|.+++
T Consensus 176 a~~~~~~~w~~~f~~pgiiaiival~~~~~~rd~Pq 211 (448)
T COG2271 176 AFFAFHGGWRAAFYFPGIIAIIVALILLFLLRDRPQ 211 (448)
T ss_pred HHHHhccchhHHHHHHHHHHHHHHHHHHHHhCCCcc
Confidence 444444 23334456677788888888776665543
No 123
>PF14283 DUF4366: Domain of unknown function (DUF4366)
Probab=54.46 E-value=6.4 Score=35.34 Aligned_cols=19 Identities=11% Similarity=-0.081 Sum_probs=9.8
Q ss_pred HHHHHHHHhccCCCCCCCC
Q 018484 302 IAMGIILKMLPENKAPANN 320 (355)
Q Consensus 302 v~~Gv~ly~~~k~~~~~~~ 320 (355)
+++|...|.|.|.++|+++
T Consensus 170 ~l~gGGa~yYfK~~K~K~~ 188 (218)
T PF14283_consen 170 ALIGGGAYYYFKFYKPKQE 188 (218)
T ss_pred HHhhcceEEEEEEeccccc
Confidence 3344455666665544443
No 124
>KOG1582 consensus UDP-galactose transporter related protein [Carbohydrate transport and metabolism]
Probab=53.91 E-value=94 Score=29.04 Aligned_cols=45 Identities=11% Similarity=0.305 Sum_probs=35.0
Q ss_pred HHHhhcchHHHHHHHhhhcCCccccChhHHHHHHHHHHHHHHHhccC
Q 018484 113 IMFKSTKVLPVMIMGAFIPGLRRKYPAHEYVAALLLVFGLILFTMAD 159 (355)
Q Consensus 113 ~v~ks~~pi~v~l~~~l~~gl~~~~s~~~~~~l~li~~Gv~l~~~~~ 159 (355)
.++....=..|.++++++ |.|+++....-+.++++.|+.+=.+++
T Consensus 290 atvTTaRKavTi~lSfll--FsKPfT~qy~~~gllv~lgI~Ln~ysk 334 (367)
T KOG1582|consen 290 ATVTTARKAVTILLSFLL--FSKPFTEQYVWSGLLVVLGIYLNMYSK 334 (367)
T ss_pred HHHHHhHhHHHHHHHHHH--HcCchHHHHhhhhHHHHHHHHhhcccC
Confidence 333333445678889999 899999988888899999999887765
No 125
>PF05961 Chordopox_A13L: Chordopoxvirus A13L protein; InterPro: IPR009236 This family consists of A13L proteins from the Chordopoxviruses. A13L or p8 is one of the three most abundant membrane proteins of the intracellular mature Vaccinia virus [].
Probab=53.91 E-value=17 Score=25.97 Aligned_cols=23 Identities=17% Similarity=0.117 Sum_probs=17.1
Q ss_pred hhhhHHHHHHHHHHHhccCCCCC
Q 018484 295 HGTGLLLIAMGIILKMLPENKAP 317 (355)
Q Consensus 295 ~~iG~~lv~~Gv~ly~~~k~~~~ 317 (355)
-.+++.+++.|.++|....++..
T Consensus 6 iLi~ICVaii~lIlY~iYnr~~~ 28 (68)
T PF05961_consen 6 ILIIICVAIIGLILYGIYNRKKT 28 (68)
T ss_pred HHHHHHHHHHHHHHHHHHhcccc
Confidence 45788889999999977655433
No 126
>PF04342 DUF486: Protein of unknown function, DUF486; InterPro: IPR007437 This family contains several proteins of uncharacterised function.
Probab=52.95 E-value=14 Score=28.98 Aligned_cols=28 Identities=18% Similarity=0.082 Sum_probs=24.2
Q ss_pred HHHHHHHhCCCcccchhhhHHHHHHHHH
Q 018484 280 LFLSYLIFTKPLTEQHGTGLLLIAMGII 307 (355)
Q Consensus 280 i~ls~l~f~~~~t~~~~iG~~lv~~Gv~ 307 (355)
..+|+++++|++++.+..|.++.+++++
T Consensus 77 ~~Fsv~~l~E~l~~n~l~af~~i~~av~ 104 (108)
T PF04342_consen 77 APFSVFYLGEPLKWNYLWAFLCILGAVY 104 (108)
T ss_pred HHHHHHHhCCCccHHHHHHHHHHHHhhh
Confidence 4567889999999999999999988764
No 127
>PF03348 Serinc: Serine incorporator (Serinc); InterPro: IPR005016 This is a family of proteins which display differential expression in various tumour and cell lines. The function of these proteins is unknown. ; GO: 0016020 membrane
Probab=50.10 E-value=24 Score=35.07 Aligned_cols=25 Identities=16% Similarity=0.118 Sum_probs=18.2
Q ss_pred CcccchhhhHHHHHHHHHHHhccCC
Q 018484 290 PLTEQHGTGLLLIAMGIILKMLPEN 314 (355)
Q Consensus 290 ~~t~~~~iG~~lv~~Gv~ly~~~k~ 314 (355)
.-++..++|.++.+..+...++...
T Consensus 282 ~~~~~~iig~i~~~~~v~yss~ra~ 306 (429)
T PF03348_consen 282 WNTWQSIIGLIFTFVSVLYSSFRAS 306 (429)
T ss_pred cchHHHHHHHHHHHHHHHHhccccc
Confidence 4566778999999988876665543
No 128
>PF11022 DUF2611: Protein of unknown function (DUF2611); InterPro: IPR021278 This family is conserved in the Dikarya of Fungi. The function is not known.
Probab=49.21 E-value=10 Score=27.61 Aligned_cols=30 Identities=17% Similarity=0.232 Sum_probs=15.3
Q ss_pred HHHhCCCcccc-hhhhHHHHHHHHHHHhccC
Q 018484 284 YLIFTKPLTEQ-HGTGLLLIAMGIILKMLPE 313 (355)
Q Consensus 284 ~l~f~~~~t~~-~~iG~~lv~~Gv~ly~~~k 313 (355)
+-+||..+.+- -.+|.+-.++|++.+...+
T Consensus 5 Y~I~Gr~V~~H~LAi~tLg~~~~~~~~~~~g 35 (71)
T PF11022_consen 5 YTIFGRQVQSHYLAIATLGTVFGGVYLATSG 35 (71)
T ss_pred eeecccccccchhHHHHHHHHHHHheeccCC
Confidence 34566554443 3455555555555554433
No 129
>PF04971 Lysis_S: Lysis protein S ; InterPro: IPR007054 The lysis S protein is a cytotoxic protein forming holes in membranes causing cell lysis. The action of Lysis S is independent of the proportion of acidic phospholipids in the membrane [].
Probab=48.76 E-value=17 Score=26.15 Aligned_cols=24 Identities=4% Similarity=0.065 Sum_probs=15.8
Q ss_pred HHHHHHHHHHHhccCCCCCCCCCC
Q 018484 299 LLLIAMGIILKMLPENKAPANNRP 322 (355)
Q Consensus 299 ~~lv~~Gv~ly~~~k~~~~~~~~~ 322 (355)
+++.+++.+...|.|.|+.+++++
T Consensus 42 i~~~~lt~ltN~YFK~k~drr~~a 65 (68)
T PF04971_consen 42 IFFGLLTYLTNLYFKIKEDRRKAA 65 (68)
T ss_pred HHHHHHHHHhHhhhhhhHhhhHhh
Confidence 455566666777888877666554
No 130
>COG3115 ZipA Cell division protein [Cell division and chromosome partitioning]
Probab=48.37 E-value=19 Score=33.65 Aligned_cols=38 Identities=18% Similarity=0.334 Sum_probs=24.8
Q ss_pred HHHHHHHHHHh-ccCCCCCCC---CCCCCcCCCCCCCCChhh
Q 018484 300 LLIAMGIILKM-LPENKAPAN---NRPNSHNNVKRRKSPEPE 337 (355)
Q Consensus 300 ~lv~~Gv~ly~-~~k~~~~~~---~~~~~~~~~~~~~~~~~~ 337 (355)
+++++|+++.. |..+|+++. ++.-+..|.+|++||.++
T Consensus 13 ~IAIiaLLvhGlWtsRkE~s~~F~~~p~~r~~s~~~d~~~~~ 54 (324)
T COG3115 13 AIAIIALLVHGLWTSRKERSSYFRDRPLKRMKSKRDDDPYDE 54 (324)
T ss_pred HHHHHHHHHhhhhhcchhhccccccCccchhhhccCCChhhh
Confidence 45566666666 444454443 556667788888888877
No 131
>PF02694 UPF0060: Uncharacterised BCR, YnfA/UPF0060 family; InterPro: IPR003844 This entry describes integral membrane proteins of unknown function.; GO: 0016020 membrane
Probab=48.29 E-value=1.4e+02 Score=23.66 Aligned_cols=47 Identities=11% Similarity=0.100 Sum_probs=39.9
Q ss_pred HHHHHHhHHHHHHHHHHHHHhCCCcccchhhhHHHHHHHHHHHhccC
Q 018484 267 TTAMITTARKAVTLFLSYLIFTKPLTEQHGTGLLLIAMGIILKMLPE 313 (355)
Q Consensus 267 t~svv~~~k~v~~i~ls~l~f~~~~t~~~~iG~~lv~~Gv~ly~~~k 313 (355)
.++..+-+--+.+++.++.+-+++++...++|..+++.|+.+-.+..
T Consensus 59 vYAAYGGvfI~~Sl~W~w~vdg~~Pd~~D~iGa~i~L~G~~iI~~~P 105 (107)
T PF02694_consen 59 VYAAYGGVFIVASLLWGWLVDGVRPDRWDWIGAAICLVGVAIILFAP 105 (107)
T ss_pred HHHHhhhhHHHHHHHHHhhhcCcCCChHHHHhHHHHHHhHHheEecC
Confidence 45667777788999999999999999999999999999998755443
No 132
>PRK02935 hypothetical protein; Provisional
Probab=47.91 E-value=66 Score=25.28 Aligned_cols=40 Identities=8% Similarity=-0.008 Sum_probs=23.3
Q ss_pred chhhhHHHHHHHHHHHhccCCCCCCC-----CCCCCcCCCCCCCC
Q 018484 294 QHGTGLLLIAMGIILKMLPENKAPAN-----NRPNSHNNVKRRKS 333 (355)
Q Consensus 294 ~~~iG~~lv~~Gv~ly~~~k~~~~~~-----~~~~~~~~~~~~~~ 333 (355)
.-.+|.+.++++..+|-|.....-+. |.=++.-|.-+|.|
T Consensus 43 fm~~G~l~~l~S~vvYFwiGmlStkavqV~CP~C~K~TKmLGrvD 87 (110)
T PRK02935 43 FMLLGFLAVIASTVVYFWIGMLSTKAVQVICPSCEKPTKMLGRVD 87 (110)
T ss_pred HHHHHHHHHHHHHHHHHHHhhhcccceeeECCCCCchhhhcccee
Confidence 34567777777777777764432222 34455556666655
No 133
>COG3169 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=44.88 E-value=46 Score=25.84 Aligned_cols=30 Identities=20% Similarity=0.178 Sum_probs=25.8
Q ss_pred HHHHHHHHhCCCcccchhhhHHHHHHHHHH
Q 018484 279 TLFLSYLIFTKPLTEQHGTGLLLIAMGIIL 308 (355)
Q Consensus 279 ~i~ls~l~f~~~~t~~~~iG~~lv~~Gv~l 308 (355)
-..+|++..+|++.+.++.|..++++|+..
T Consensus 83 Fv~Fsvfyl~epl~~~~l~a~~~i~gav~f 112 (116)
T COG3169 83 FVPFSVFYLKEPLRWNYLWAFLLILGAVYF 112 (116)
T ss_pred HHHHHHHHHcCcchHHHHHHHHHHHHHHHH
Confidence 345788999999999999999998888754
No 134
>PF12606 RELT: Tumour necrosis factor receptor superfamily member 19; InterPro: IPR022248 The members of tumor necrosis factor receptor (TNFR) superfamily have been designated as the "guardians of the immune system" due to their roles in immune cell proliferation, differentiation, activation, and death (apoptosis). RELT (receptor expressed in lymphoid tissues) is a member of the TNFR superfamily. The messenger RNA of RELT is especially abundant in hematologic tissues such as spleen, lymph node, and peripheral blood leukocytes as well as in leukemias and lymphomas. RELT is able to activate the NF-kappaB pathway and selectively binds tumor necrosis factor receptor-associated factor 1 []. RELT like proteins 1 and 2 (RELL1 and RELL2) are two RELT homologues that bind to RELT. The expression of RELL1 at the mRNA level is ubiquitous, whereas expression of RELL2 mRNA is more restricted to particular tissues [].
Probab=44.88 E-value=27 Score=23.61 Aligned_cols=15 Identities=7% Similarity=0.135 Sum_probs=7.3
Q ss_pred HHHHHHHHHHhccCC
Q 018484 300 LLIAMGIILKMLPEN 314 (355)
Q Consensus 300 ~lv~~Gv~ly~~~k~ 314 (355)
++++.|+.+....|.
T Consensus 12 v~~lLg~~I~~~~K~ 26 (50)
T PF12606_consen 12 VMGLLGLSICTTLKA 26 (50)
T ss_pred HHHHHHHHHHHHhhc
Confidence 344455555554443
No 135
>PF05684 DUF819: Protein of unknown function (DUF819); InterPro: IPR008537 This family contains proteins of unknown function from archaeal, bacterial and plant species.
Probab=43.88 E-value=3.2e+02 Score=26.71 Aligned_cols=8 Identities=25% Similarity=0.069 Sum_probs=4.3
Q ss_pred CccccChh
Q 018484 133 LRRKYPAH 140 (355)
Q Consensus 133 l~~~~s~~ 140 (355)
+.||+.++
T Consensus 13 le~~~~~~ 20 (378)
T PF05684_consen 13 LEQKTKWG 20 (378)
T ss_pred Hhcchhhh
Confidence 34555555
No 136
>PF15345 TMEM51: Transmembrane protein 51
Probab=43.61 E-value=14 Score=33.17 Aligned_cols=26 Identities=19% Similarity=0.448 Sum_probs=19.1
Q ss_pred hhhHHHHHHHHHHHhccCCCCCCCCC
Q 018484 296 GTGLLLIAMGIILKMLPENKAPANNR 321 (355)
Q Consensus 296 ~iG~~lv~~Gv~ly~~~k~~~~~~~~ 321 (355)
..|+++.+..+++....|+|++...+
T Consensus 66 G~Gv~LLLLSICL~IR~KRr~rq~~e 91 (233)
T PF15345_consen 66 GSGVALLLLSICLSIRDKRRRRQGEE 91 (233)
T ss_pred hHHHHHHHHHHHHHHHHHHHHhhccc
Confidence 45888888888888877766655554
No 137
>PF00558 Vpu: Vpu protein; InterPro: IPR008187 The Human immunodeficiency virus 1 (HIV-1) Vpu protein acts in the degradation of CD4 in the endoplasmic reticulum and in the enhancement of virion release from the plasma membrane of infected cells [].; GO: 0019076 release of virus from host; PDB: 2JPX_A 1PI8_A 2GOH_A 2GOF_A 1PI7_A 1PJE_A 1VPU_A 2K7Y_A.
Probab=41.91 E-value=5 Score=30.00 Aligned_cols=15 Identities=40% Similarity=0.461 Sum_probs=10.4
Q ss_pred hhhhccccCCcchhc
Q 018484 336 PEEKSLVETNGEVEE 350 (355)
Q Consensus 336 ~~~~~~~~~~~~~~~ 350 (355)
+.|.|--|.|||+||
T Consensus 49 raEDSGnES~Gd~Ee 63 (81)
T PF00558_consen 49 RAEDSGNESDGDEEE 63 (81)
T ss_dssp TTTCCHCTTTTCCHH
T ss_pred ccccCCCCCCCcHHH
Confidence 556677777777776
No 138
>PF07423 DUF1510: Protein of unknown function (DUF1510); InterPro: IPR009988 This family consists of several hypothetical bacterial proteins of around 200 residues in length. The function of this family is unknown.
Probab=41.34 E-value=27 Score=31.35 Aligned_cols=19 Identities=16% Similarity=0.099 Sum_probs=12.8
Q ss_pred hhhhHHHHHHHHHHHhccC
Q 018484 295 HGTGLLLIAMGIILKMLPE 313 (355)
Q Consensus 295 ~~iG~~lv~~Gv~ly~~~k 313 (355)
-.||++++++.++.|.++.
T Consensus 18 iaI~IV~lLIiiva~~lf~ 36 (217)
T PF07423_consen 18 IAIGIVSLLIIIVAYQLFF 36 (217)
T ss_pred HHHHHHHHHHHHHhhhhee
Confidence 4567777777777776654
No 139
>TIGR00806 rfc RFC reduced folate carrier. Proteins of the RFC family are so-far restricted to animals. RFC proteins possess 12 putative transmembrane a-helical spanners (TMSs) and evidence for a 12 TMS topology has been published for the human RFC. The RFC transporters appear to transport reduced folate by an energy-dependent, pH-dependent, Na+-independent mechanism. Folate:H+ symport, folate:OH- antiport and folate:anion antiport mechanisms have been proposed, but the energetic mechanism is not well defined.
Probab=40.95 E-value=2.7e+02 Score=28.40 Aligned_cols=31 Identities=10% Similarity=0.155 Sum_probs=14.5
Q ss_pred HHHHHHHHHhhchHHHHHHHhHHHHHHHHHH
Q 018484 253 QVSVLSLIALFGAATTAMITTARKAVTLFLS 283 (355)
Q Consensus 253 ~~~~~~~i~~~sa~t~svv~~~k~v~~i~ls 283 (355)
.+..+-+-+..+.-..+++.-++..+++++-
T Consensus 372 tia~~~iA~~L~~~~~aLvFGiNtfvAl~LQ 402 (511)
T TIGR00806 372 PIATFQIASSLSKELCALVFGINTFVATALK 402 (511)
T ss_pred HHHHHHHHHHhcccceEEEEecHHHHHHHHH
Confidence 3344444455554444444444455555444
No 140
>PF13994 PgaD: PgaD-like protein
Probab=40.72 E-value=20 Score=29.60 Aligned_cols=21 Identities=14% Similarity=0.113 Sum_probs=16.0
Q ss_pred CCChhhhhccccCCcchhccC
Q 018484 332 KSPEPEEKSLVETNGEVEEKQ 352 (355)
Q Consensus 332 ~~~~~~~~~~~~~~~~~~~~~ 352 (355)
.|++|..+|.+.++++.+|-|
T Consensus 101 ~~~~elA~~f~l~~~~l~~lr 121 (138)
T PF13994_consen 101 VSDEELARSFGLSPEQLQQLR 121 (138)
T ss_pred CCHHHHHHHcCCCHHHHHHHH
Confidence 677888888888888776643
No 141
>PF15471 TMEM171: Transmembrane protein family 171
Probab=40.43 E-value=19 Score=33.09 Aligned_cols=26 Identities=15% Similarity=0.255 Sum_probs=21.8
Q ss_pred cchhhhHHHHHHHHHHHhccCCCCCC
Q 018484 293 EQHGTGLLLIAMGIILKMLPENKAPA 318 (355)
Q Consensus 293 ~~~~iG~~lv~~Gv~ly~~~k~~~~~ 318 (355)
.+|++|-++++.|.+.+..+..|+|.
T Consensus 161 slQImGPlIVl~GLCFFVVAHvKKr~ 186 (319)
T PF15471_consen 161 SLQIMGPLIVLVGLCFFVVAHVKKRN 186 (319)
T ss_pred ehhhhhhHHHHHhhhhhheeeeeecc
Confidence 46999999999999999888766553
No 142
>cd01324 cbb3_Oxidase_CcoQ Cytochrome cbb oxidase CcoQ. Cytochrome cbb3 oxidase, the terminal oxidase in the respiratory chains of proteobacteria, is a multi-chain transmembrane protein located in the cell membrane. Like other cytochrome oxidases, it catalyzes the reduction of O2 and simultaneously pumps protons across the membrane. Found exclusively in proteobacteria, cbb3 is believed to be a modern enzyme that has evolved independently to perform a specialized function in microaerobic energy metabolism. The cbb3 operon contains four genes (ccoNOQP or fixNOQP), with ccoN coding for subunit I. Instead of a CuA-containing subunit II analogous to other cytochrome oxidases, cbb3 utilizes subunits ccoO and ccoP, which contain one and two hemes, respectively, to transfer electrons to the binuclear center. ccoQ, the fourth subunit, is a single transmembrane helix protein. It has been shown to protect the core complex from proteolytic degradation by serine proteases. See cd00919, cd01322
Probab=39.35 E-value=14 Score=24.75 Aligned_cols=23 Identities=17% Similarity=0.276 Sum_probs=17.2
Q ss_pred hHHHHHHHHHHHhccCCCCCCCC
Q 018484 298 GLLLIAMGIILKMLPENKAPANN 320 (355)
Q Consensus 298 G~~lv~~Gv~ly~~~k~~~~~~~ 320 (355)
-..++++|+++|.+.++++|.-+
T Consensus 18 ~~~~~Figiv~wa~~p~~k~~f~ 40 (48)
T cd01324 18 YLALFFLGVVVWAFRPGRKKAFD 40 (48)
T ss_pred HHHHHHHHHHHHHhCCCcchhHH
Confidence 35788999999999876655433
No 143
>KOG1479 consensus Nucleoside transporter [Nucleotide transport and metabolism]
Probab=38.85 E-value=3.9e+02 Score=26.45 Aligned_cols=43 Identities=7% Similarity=0.087 Sum_probs=22.5
Q ss_pred HHHhHHHHHHHHHHHHHhCCCcccc--hhhhHHHHHHHHHHHhcc
Q 018484 270 MITTARKAVTLFLSYLIFTKPLTEQ--HGTGLLLIAMGIILKMLP 312 (355)
Q Consensus 270 vv~~~k~v~~i~ls~l~f~~~~t~~--~~iG~~lv~~Gv~ly~~~ 312 (355)
+.|.+-.+..++.-...=+++-+.. ..++.++.+..++.|...
T Consensus 159 ~aG~l~Sl~~i~tka~~~~~~~sA~~yF~~s~~~~llC~i~y~~l 203 (406)
T KOG1479|consen 159 LAGTLTSLLRILTKAAFSDSRTSALIYFITSTVILLLCFVLYLVL 203 (406)
T ss_pred hHhHHHHHHHHHHHHhcCCCCceeehhHHHHHHHHHHHHHHHHHh
Confidence 4444444444444444444554444 445556667777777733
No 144
>PF15327 Tankyrase_bdg_C: Tankyrase binding protein C terminal domain
Probab=38.60 E-value=14 Score=31.52 Aligned_cols=23 Identities=39% Similarity=0.465 Sum_probs=12.7
Q ss_pred CCCChh-hhhcc--ccCCcchhccCC
Q 018484 331 RKSPEP-EEKSL--VETNGEVEEKQP 353 (355)
Q Consensus 331 ~~~~~~-~~~~~--~~~~~~~~~~~~ 353 (355)
+||.++ ++|+- .++|.|||||++
T Consensus 63 ~DSTe~~~~~~~~~~dsd~~Ee~k~~ 88 (177)
T PF15327_consen 63 KDSTETRESKSPRREDSDSEEEEKPR 88 (177)
T ss_pred ccCcccccccccccccccccccccCc
Confidence 466555 44442 455555777764
No 145
>PRK02237 hypothetical protein; Provisional
Probab=38.37 E-value=2e+02 Score=22.79 Aligned_cols=48 Identities=13% Similarity=0.052 Sum_probs=40.1
Q ss_pred HHHHHHHhHHHHHHHHHHHHHhCCCcccchhhhHHHHHHHHHHHhccC
Q 018484 266 ATTAMITTARKAVTLFLSYLIFTKPLTEQHGTGLLLIAMGIILKMLPE 313 (355)
Q Consensus 266 ~t~svv~~~k~v~~i~ls~l~f~~~~t~~~~iG~~lv~~Gv~ly~~~k 313 (355)
-.++..+-+--+.+++.++.+-|.+++...++|.++++.|+.+-.+..
T Consensus 60 RvYAAYGGvyI~~Sl~W~w~vdg~~Pd~~D~iGa~v~L~G~~iI~~~p 107 (109)
T PRK02237 60 RVYAAYGGVYVAGSLLWLWVVDGVRPDRWDWIGAAICLVGMAVIMYAP 107 (109)
T ss_pred hHHHHhhhHHHHHHHHHHHHhcCcCCChhHHHhHHHHHHhHHHheecC
Confidence 346667777788899999999999999999999999999997655443
No 146
>PRK03893 putative sialic acid transporter; Provisional
Probab=36.63 E-value=4.2e+02 Score=26.00 Aligned_cols=11 Identities=27% Similarity=0.800 Sum_probs=4.2
Q ss_pred hHHHHHHHHHH
Q 018484 21 WQQFLICSSGF 31 (355)
Q Consensus 21 ~~~~~~~~~~i 31 (355)
|..+..+..+.
T Consensus 19 ~~~~~~~~~~~ 29 (496)
T PRK03893 19 WKAFSAAWLGY 29 (496)
T ss_pred HHHHHHHHHHH
Confidence 33333333333
No 147
>PRK01637 hypothetical protein; Reviewed
Probab=35.64 E-value=80 Score=29.39 Aligned_cols=20 Identities=10% Similarity=-0.194 Sum_probs=12.2
Q ss_pred cchhhhHHHHHHHHHHHhcc
Q 018484 293 EQHGTGLLLIAMGIILKMLP 312 (355)
Q Consensus 293 ~~~~iG~~lv~~Gv~ly~~~ 312 (355)
|.++.+.++.+++.+-..+.
T Consensus 248 Wlyl~~~ilL~Gaelna~~~ 267 (286)
T PRK01637 248 WVYLSWCIVLLGAEITATLG 267 (286)
T ss_pred HHHHHHHHHHHHHHHHHHHH
Confidence 45666777766666555544
No 148
>PF00873 ACR_tran: AcrB/AcrD/AcrF family; InterPro: IPR001036 The Escherichia coli acrA and acrB genes encode a multi-drug efflux system that is believed to protect the bacterium against hydrophobic inhibitors []. The E. coli AcrB protein is a transporter that is energized by proton-motive force and that shows the widest substrate specificity among all known multidrug pumps, ranging from most of the currently used antibiotics, disinfectants, dyes, and detergents to simple solvents. The structure of ligand-free AcrB shows that it is a homotrimer of 110kDa per subunit. Each subunit contains 12 transmembrane helices and two large periplasmic domains (each exceeding 300 residues) between helices 1 and 2, and helices 7 and 8. X-ray analysis of the overexpressed AcrB protein demonstrated that the three periplasmic domains form, in the centre, a funnel-like structure and a connected narrow (or closed) pore. The pore is opened to the periplasm through three vestibules located at subunit interfaces. These vestibules were proposed to allow direct access of drugs from the periplasm as well as the outer leaflet of the cytoplasmic membrane. The three transmembrane domains of AcrB protomers form a large, 30A-wide central cavity that spans the cytoplasmic membrane and extends to the cytoplasm X-ray crystallographic structures of the trimeric AcrB pump from E. coli with four structurally diverse ligands demonstrated that three molecules of ligand bind simultaneously to the extremely large central cavity of 5000 cubic angstroms, primarily by hydrophobic, aromatic stacking and van der Waals interactions. Each ligand uses a slightly different subset of AcrB residues for binding. The bound ligand molecules often interact with each other, stabilising the binding. ; GO: 0005215 transporter activity, 0006810 transport, 0016020 membrane; PDB: 2V50_B 1T9U_A 2HRT_B 3NOC_A 3NOG_A 4DX7_A 1OYD_A 3AOB_A 1T9V_A 4DX6_B ....
Probab=34.60 E-value=3.4e+02 Score=30.23 Aligned_cols=60 Identities=15% Similarity=0.254 Sum_probs=31.1
Q ss_pred HHHHHHHhhhcCCc-cccChhHHHHHHHHHHHHHHHhccCCCCCCCchhhHHHHHHHHHHHHHh
Q 018484 121 LPVMIMGAFIPGLR-RKYPAHEYVAALLLVFGLILFTMADAQTSPNFSLIGVLMISGALVMDSF 183 (355)
Q Consensus 121 i~v~l~~~l~~gl~-~~~s~~~~~~l~li~~Gv~l~~~~~~~~~~~~~~~G~~l~l~s~~~~a~ 183 (355)
+.++++-++| +| -|.+....+++=+.+++.+++..--+-+-..-++.|.++++ +.+.|..
T Consensus 342 ~lv~~vl~lf--l~~~r~~liv~~~IPisi~~t~~~m~~~g~slN~~SL~gl~lai-G~lVDda 402 (1021)
T PF00873_consen 342 ILVVLVLLLF--LRNWRSALIVALSIPISILGTFIFMYLFGISLNIMSLAGLILAI-GMLVDDA 402 (1021)
T ss_dssp HHHHHHHHHH--HTSHHHHHHHHHHHHHHHHHHHHHHHHTTTTBEHHHHHHHHHHH-HHHHHHH
T ss_pred Hhhhhhhhhh--hcchHHHHHHHHHHHHHHHHHHHHHHHcCCCchHHHHHhHHHhc-ccccccc
Confidence 3444445555 44 36666666777777777665543322111123466666654 4445443
No 149
>KOG4831 consensus Unnamed protein [Function unknown]
Probab=34.54 E-value=60 Score=25.64 Aligned_cols=59 Identities=19% Similarity=0.183 Sum_probs=42.2
Q ss_pred HhhHHHHHHHhhCCChhHHH-HHhhcchHHHHHHHhhhcCCccccChh-HHHHHHHHHHHHHHH
Q 018484 94 MGSHGLTKGSLAFLNYPAQI-MFKSTKVLPVMIMGAFIPGLRRKYPAH-EYVAALLLVFGLILF 155 (355)
Q Consensus 94 ~~~~~l~~~sL~~~s~~~~~-v~ks~~pi~v~l~~~l~~gl~~~~s~~-~~~~l~li~~Gv~l~ 155 (355)
-.+..+.+.-|+..|++.+. +..|++-.++.+.+..+ +|+.+.+ ..++..++++|+.+.
T Consensus 63 qcgSaly~~tLa~a~islavpv~nsltfafta~~G~~L---GE~~~g~~a~lGt~liv~Gi~Lc 123 (125)
T KOG4831|consen 63 QCGSALYYLTLASAPISLAVPVTNSLTFAFTAIFGKAL---GEETQGGLALLGTSLIVFGIWLC 123 (125)
T ss_pred HhhHHHHHHHHhcCCceeeeeecchhHHHHHHHHHHHh---ccccccceeehhhhHHhhhhhhe
Confidence 33445667777887777654 44467788999999887 6666655 578889999987654
No 150
>PF11446 DUF2897: Protein of unknown function (DUF2897); InterPro: IPR021550 This is a bacterial family of uncharacterised proteins.
Probab=33.39 E-value=29 Score=23.97 Aligned_cols=16 Identities=19% Similarity=0.474 Sum_probs=8.9
Q ss_pred hhHHHHHHHHHHHhcc
Q 018484 297 TGLLLIAMGIILKMLP 312 (355)
Q Consensus 297 iG~~lv~~Gv~ly~~~ 312 (355)
.-+.++..|+++.+..
T Consensus 6 wlIIviVlgvIigNia 21 (55)
T PF11446_consen 6 WLIIVIVLGVIIGNIA 21 (55)
T ss_pred hHHHHHHHHHHHhHHH
Confidence 3455566666665543
No 151
>PF07444 Ycf66_N: Ycf66 protein N-terminus; InterPro: IPR010004 This entry represents Ycf66, a protein that is restricted to the chloroplasts of simple plants and algae. It is also found in the cyanobacteria. The function is unknown. As the family is exclusively found in phototrophic organisms it may play a role in photosynthesis.
Probab=31.76 E-value=31 Score=26.03 Aligned_cols=26 Identities=23% Similarity=0.225 Sum_probs=21.3
Q ss_pred CcccchhhhHHHHHHHHHHHhccCCC
Q 018484 290 PLTEQHGTGLLLIAMGIILKMLPENK 315 (355)
Q Consensus 290 ~~t~~~~iG~~lv~~Gv~ly~~~k~~ 315 (355)
..++.+++|+.+.++|..+|...+.+
T Consensus 4 ~~~~~~iLgi~l~~~~~~Ly~lr~~~ 29 (84)
T PF07444_consen 4 GFGPSYILGIILILGGLALYFLRFFR 29 (84)
T ss_pred ccCHHHHHHHHHHHHHHHHHHHHHHC
Confidence 46788999999999999999764444
No 152
>PF01350 Flavi_NS4A: Flavivirus non-structural protein NS4A; InterPro: IPR000404 Flaviviruses encode a single polyprotein. This is cleaved into three structural and seven non-structural proteins. The NS4A protein is small and poorly conserved among the Flaviviruses. NS4A contains multiple hydrophobic potential membrane spanning regions []. NS4A has only been found in cells infected by Kunjin virus [].; GO: 0016032 viral reproduction, 0016070 RNA metabolic process, 0044423 virion part
Probab=31.52 E-value=3.1e+02 Score=22.93 Aligned_cols=64 Identities=14% Similarity=0.226 Sum_probs=38.3
Q ss_pred HHHHHHhhchHHHHHHHhHHHHHHHHHHHHHhCCCcccchhhhHHHHHHHHHHHhccCCCCCCCCCCCC
Q 018484 256 VLSLIALFGAATTAMITTARKAVTLFLSYLIFTKPLTEQHGTGLLLIAMGIILKMLPENKAPANNRPNS 324 (355)
Q Consensus 256 ~~~~i~~~sa~t~svv~~~k~v~~i~ls~l~f~~~~t~~~~iG~~lv~~Gv~ly~~~k~~~~~~~~~~~ 324 (355)
.++.+++.+-...++-. +.....+++.|--.+++.++.|+.+++.=... ......+|+|+..|+
T Consensus 65 ~~~lm~~kgi~rm~lG~----~vm~~~~~llw~ggv~~~~IAg~~lv~filmv-VLiPEpg~QRS~~DN 128 (144)
T PF01350_consen 65 FWFLMRRKGIGRMSLGM----LVMAVAGYLLWMGGVPPGQIAGVLLVFFILMV-VLIPEPGKQRSQQDN 128 (144)
T ss_pred HHhhhcCCCcchhhHHH----HHHHHHHHHHHhcCCcHHHhHHHHHHHHHHHH-hcccCCCCcCCcccc
Confidence 33445554444444332 34556677777778899999999988775544 334445555554443
No 153
>PF05545 FixQ: Cbb3-type cytochrome oxidase component FixQ; InterPro: IPR008621 This family consists of several Cbb3-type cytochrome oxidase components (FixQ/CcoQ). FixQ is found in nitrogen fixing bacteria. Since nitrogen fixation is an energy-consuming process, effective symbioses depend on operation of a respiratory chain with a high affinity for O2, closely coupled to ATP production. This requirement is fulfilled by a special three-subunit terminal oxidase (cytochrome terminal oxidase cbb3), which was first identified in Bradyrhizobium japonicum as the product of the fixNOQP operon [].
Probab=31.18 E-value=19 Score=23.92 Aligned_cols=19 Identities=11% Similarity=0.251 Sum_probs=13.5
Q ss_pred hHHHHHHHHHHHhccCCCC
Q 018484 298 GLLLIAMGIILKMLPENKA 316 (355)
Q Consensus 298 G~~lv~~Gv~ly~~~k~~~ 316 (355)
-..+++.|++++.+.++++
T Consensus 17 ~~~~~F~gi~~w~~~~~~k 35 (49)
T PF05545_consen 17 LFFVFFIGIVIWAYRPRNK 35 (49)
T ss_pred HHHHHHHHHHHHHHcccch
Confidence 3456778888988876653
No 154
>PRK02237 hypothetical protein; Provisional
Probab=29.24 E-value=90 Score=24.72 Aligned_cols=33 Identities=9% Similarity=0.185 Sum_probs=27.2
Q ss_pred HHHHhhhcCCccccChhHHHHHHHHHHHHHHHhcc
Q 018484 124 MIMGAFIPGLRRKYPAHEYVAALLLVFGLILFTMA 158 (355)
Q Consensus 124 ~l~~~l~~gl~~~~s~~~~~~l~li~~Gv~l~~~~ 158 (355)
.+-++.+ -++|+++.++++..++++|+.++.+.
T Consensus 74 l~W~w~v--dg~~Pd~~D~iGa~v~L~G~~iI~~~ 106 (109)
T PRK02237 74 LLWLWVV--DGVRPDRWDWIGAAICLVGMAVIMYA 106 (109)
T ss_pred HHHHHHh--cCcCCChhHHHhHHHHHHhHHHheec
Confidence 3456666 48999999999999999999888654
No 155
>PF06286 Coleoptericin: Coleoptericin; InterPro: IPR009382 This family consists of several insect coleoptericin, acaloleptin, holotricin and rhinocerosin proteins which are all known to be antibacterial proteins []. These all appear to be short, glycine-rich molecules, inducible by infection.; GO: 0042742 defense response to bacterium, 0005576 extracellular region
Probab=29.20 E-value=28 Score=28.09 Aligned_cols=27 Identities=15% Similarity=0.099 Sum_probs=20.4
Q ss_pred CcCCCCCCCCChhhhhccccCCcchhc
Q 018484 324 SHNNVKRRKSPEPEEKSLVETNGEVEE 350 (355)
Q Consensus 324 ~~~~~~~~~~~~~~~~~~~~~~~~~~~ 350 (355)
+.+..++|++|||+-.-++-+||.+-|
T Consensus 35 ~~~r~~~~~~PaE~~~~~~~~de~~~e 61 (143)
T PF06286_consen 35 RLRRSEPQDSPAELNEYVDITDEPEAE 61 (143)
T ss_pred hhhcccccCChHHhhhccccccCcchh
Confidence 445677889999999888888775543
No 156
>TIGR00939 2a57 Equilibrative Nucleoside Transporter (ENT).
Probab=28.64 E-value=5.9e+02 Score=25.28 Aligned_cols=14 Identities=14% Similarity=0.214 Sum_probs=7.0
Q ss_pred cccCh--hHHHHHHHH
Q 018484 135 RKYPA--HEYVAALLL 148 (355)
Q Consensus 135 ~~~s~--~~~~~l~li 148 (355)
+|++. |...+++++
T Consensus 70 ~~i~~~~Ri~~~lv~~ 85 (437)
T TIGR00939 70 FRIPVTVRLLGGLVIL 85 (437)
T ss_pred hccCccchhHHHHHHH
Confidence 33554 555664443
No 157
>KOG0569 consensus Permease of the major facilitator superfamily [Carbohydrate transport and metabolism]
Probab=26.53 E-value=6.9e+02 Score=25.37 Aligned_cols=18 Identities=11% Similarity=-0.151 Sum_probs=10.9
Q ss_pred HHhCCCcccchhhhHHHH
Q 018484 285 LIFTKPLTEQHGTGLLLI 302 (355)
Q Consensus 285 l~f~~~~t~~~~iG~~lv 302 (355)
-++|++-+|....+..++
T Consensus 175 ~ilGt~~~W~~l~~~~~i 192 (485)
T KOG0569|consen 175 SLLGTEDLWPYLLAFPLI 192 (485)
T ss_pred HhcCCCcchHHHHHHHHH
Confidence 356777676666665544
No 158
>PF02487 CLN3: CLN3 protein; InterPro: IPR003492 Batten's disease, the juvenile variant of neuronal ceroid lipofuscionosis (NCL), is a recessively inherited disorder affecting children of 5-10 years of age. The disease is characterised by progressive loss of vision, seizures and psychomotor disturbances. Biochemically, the disease is characterised by lysosomal accumulation of hydrophobic material, mainly ATP synthase subunit C, largely in the brain but also in other tissues. The disease is fatal within a decade []. Mutations in the CLN3 gene are believed to cause Batten's disease []. The CLN3 gene, with a predicted 438-residue product, maps to chromosome p16p12.1. The gene contains at least 15 exons spanning 15kb and is highly conserved in mammals []. A 1.02kb deletion in the CLN3 gene, occurring in either one or both alleles, is found in 85% of Batten disease chromosomes causing a frameshift generating a predicted translated product of 181 amino acid residues [, ]. 22 other mutations, including deletions, insertions and point mutations, have been reported. It has been suggested that such mutations result in severely truncated CLN3 proteins, or affect its structure/conformation [, ]. CLN3 proteins, which are believed to associate in complexes, are heavily glycosylated lysosomal membrane proteins [], containing complex Asn-linked oligosaccharides []. Extensive glycosylation is important for the stability of these lysosomal proteins in the highly hydrolytic lysosomal lumen. Lysosomal sequestration of active lysosomal enzymes, transport of degraded molecules from the lysosomes, and fusion and fission between lysosomes and other organelles. The CLN3 protein is a 43kDa, highly hydrophobic, multi-transmembrane (TM), phosphorylated protein []. Hydrophobicity analysis predicts 6-9 TM segments, suggesting that CLN3 is a TM protein that may function as a chaperone or signal transducer. The majority of putative phosphorylation sites are found in the N-terminal domain, encompassing 150 residues []. Phosphorylation is believed to be important for membrane compartment interaction, in the formation of functional complexes, and in regulation and interactions with other proteins []. CLN3 contains several motifs that may undergo lipid post-translational modifications (PTMs). PTMs contribute to targeting and anchoring of modified proteins to distinct biological membranes []. There are three general classes of lipid modification: N-terminal myristoylation, C-terminal prenylation, and palmitoylation of cysteine residues. Such modifications are believed to be a common form of PTM occurring in 0.5% of all cellular proteins, including brain tissue []. The C terminus of the CLN3 contains various lipid modification sites: C435, target for prenylation; G419, target for myristoylation; and C414, target for palmitoylation []. Prenylation results in protein hydrophobicity, influences interaction with upstream regulatory proteins and downstream effectors, facilitates protein-protein interaction (multisubunit assembly) and promotes anchoring to membrane lipids. The prenylation motif, Cys-A-A-X, is highly conserved within CLN3 protein sequences of different species []. Species with known CLN3 protein homologues include: Homo sapiens, Canis familiaris, Mus musculus, Saccharomyces cerevisiae and Drosophila melanogaster.; GO: 0016020 membrane
Probab=26.31 E-value=1.4e+02 Score=29.52 Aligned_cols=25 Identities=20% Similarity=0.279 Sum_probs=17.9
Q ss_pred CccccChhHHHHHHHHHHHHHHHhc
Q 018484 133 LRRKYPAHEYVAALLLVFGLILFTM 157 (355)
Q Consensus 133 l~~~~s~~~~~~l~li~~Gv~l~~~ 157 (355)
.|-++..|.+.++++.++|..+.+.
T Consensus 84 ~~v~y~~Ri~~~~~l~~~g~l~va~ 108 (402)
T PF02487_consen 84 HRVPYWIRILICVALSAAGMLLVAF 108 (402)
T ss_pred hhccchHHHHHHHHHHHHHHhheee
Confidence 3556777888888888888776643
No 159
>PF02694 UPF0060: Uncharacterised BCR, YnfA/UPF0060 family; InterPro: IPR003844 This entry describes integral membrane proteins of unknown function.; GO: 0016020 membrane
Probab=26.20 E-value=94 Score=24.54 Aligned_cols=33 Identities=12% Similarity=0.326 Sum_probs=27.2
Q ss_pred HHHHhhhcCCccccChhHHHHHHHHHHHHHHHhcc
Q 018484 124 MIMGAFIPGLRRKYPAHEYVAALLLVFGLILFTMA 158 (355)
Q Consensus 124 ~l~~~l~~gl~~~~s~~~~~~l~li~~Gv~l~~~~ 158 (355)
++-++.+ -++++++.++++..++++|+.++.+.
T Consensus 72 l~W~w~v--dg~~Pd~~D~iGa~i~L~G~~iI~~~ 104 (107)
T PF02694_consen 72 LLWGWLV--DGVRPDRWDWIGAAICLVGVAIILFA 104 (107)
T ss_pred HHHHhhh--cCcCCChHHHHhHHHHHHhHHheEec
Confidence 3446666 48999999999999999999988654
No 160
>KOG0847 consensus Transcription factor, contains HOX domain [Transcription]
Probab=25.94 E-value=35 Score=30.41 Aligned_cols=53 Identities=8% Similarity=0.016 Sum_probs=31.8
Q ss_pred chhhhHHHHHHHHHHHhccCCCCCCCCCCCCcCCCCCCCCChhhhhccccCCcc
Q 018484 294 QHGTGLLLIAMGIILKMLPENKAPANNRPNSHNNVKRRKSPEPEEKSLVETNGE 347 (355)
Q Consensus 294 ~~~iG~~lv~~Gv~ly~~~k~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 347 (355)
.+-.|+...-.++++-+.. -|=+++.+++-+.--++||+-++..|--.+.+||
T Consensus 201 A~~lgmteSqvkVWFQNRR-TKWRKkhAaEmasakkkqds~ae~~~gg~~~eee 253 (288)
T KOG0847|consen 201 AQELNMTESQVKVWFQNRR-TKWRKKHAAEMASAKKKQDSGAERGAGGAPSEEE 253 (288)
T ss_pred hccccccHHHHHHHHhcch-hhhhhhhccchhhccccCCCcccccccCCCcccc
Confidence 4556777777777554432 2333345566666677888888887765443333
No 161
>KOG3733 consensus Mucolipidin and related proteins (TRML subfamily of transient receptor potential proteins) [Inorganic ion transport and metabolism]
Probab=25.51 E-value=55 Score=32.33 Aligned_cols=19 Identities=26% Similarity=0.719 Sum_probs=8.6
Q ss_pred CchhHHHHHHHHHHHHHHH
Q 018484 18 RPRWQQFLICSSGFFFGYL 36 (355)
Q Consensus 18 ~~~~~~~~~~~~~i~~~~~ 36 (355)
+|+..++..|++.||.+|+
T Consensus 411 lPkVlRFc~ca~mIYlGy~ 429 (566)
T KOG3733|consen 411 LPKVLRFCCCAAMIYLGYC 429 (566)
T ss_pred hHHHHHHHHHHHHHHHHHh
Confidence 3444444444444444443
No 162
>PF06570 DUF1129: Protein of unknown function (DUF1129); InterPro: IPR009214 There are currently no experimental data for members of this group or their homologues. However, these proteins contain predicted integral membrane proteins (with several transmembrane segments).
Probab=25.42 E-value=4.6e+02 Score=22.95 Aligned_cols=15 Identities=20% Similarity=0.477 Sum_probs=7.5
Q ss_pred CCCchHHHHHHHHHH
Q 018484 79 MVNPWKTYVKLSAVL 93 (355)
Q Consensus 79 ~~~~~~~~~~~s~~~ 93 (355)
.+.++.+++.+++..
T Consensus 142 ~r~~~~k~~~~~~~~ 156 (206)
T PF06570_consen 142 KRPSWWKYILISVLA 156 (206)
T ss_pred cccHHHHHHHHHHHH
Confidence 345555655544433
No 163
>PF12794 MscS_TM: Mechanosensitive ion channel inner membrane domain 1
Probab=25.26 E-value=4.8e+02 Score=25.01 Aligned_cols=203 Identities=17% Similarity=0.120 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHHHhccCCCCCCCchhhHHHHHHHHHHHHHhHHHHHHHHHhhCCC-------CChhhHHHHHHHHhHHHH
Q 018484 143 VAALLLVFGLILFTMADAQTSPNFSLIGVLMISGALVMDSFLGNLQEVIFTVNPD-------TTQMEMLFCSTVVGLPFL 215 (355)
Q Consensus 143 ~~l~li~~Gv~l~~~~~~~~~~~~~~~G~~l~l~s~~~~a~~~v~~~~l~~~~~~-------~~~~~l~~~~~l~~~~~l 215 (355)
..+.+..+|..+....... +-....|..+.-.+.....+...++ +.++++- .....-.+...+--....
T Consensus 60 ~pl~~~~~g~~L~~~~~~~--~~~~~l~~~l~~~a~~~~~~~~~~~--l~rp~Gl~~~HF~w~~~~~~~~r~~l~~~~~~ 135 (340)
T PF12794_consen 60 LPLLLLAIGYLLQFAAWSS--PFSVALGAALLAMALFWLVFEFFRR--LLRPNGLAERHFGWPKERVQRLRRQLRWLIWV 135 (340)
T ss_pred HHHHHHHHHHHHHhccccC--chHHHHHHHHHHHHHHHHHHHHHHH--HHCCCCeEeccCCCCHHHHHHHHHHHHHHHHH
Q ss_pred HHHHHhhchHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHHHHHhhchHHHH-----------------HHHhHHHHH
Q 018484 216 LVPMILTGELVRAWNSCSQHLYVYGVLVFEAMATFVGQVSVLSLIALFGAATTA-----------------MITTARKAV 278 (355)
Q Consensus 216 l~~~~~~ge~~~~~~~~~~~~~~~~~l~l~~~~~~l~~~~~~~~i~~~sa~t~s-----------------vv~~~k~v~ 278 (355)
++++++.....+..+............++.++. ...++.+...+...+...+ +..-+--++
T Consensus 136 ~~pl~~~~~~~~~~~~~~~~d~LGrl~~ii~~~--~l~~~~~~l~~~~~~~~~~~~~~~~~~~~~l~~~~li~~Pl~li~ 213 (340)
T PF12794_consen 136 LVPLLFISIFAENLPDGLARDVLGRLAFIILLL--LLAVFLWRLLRPGWGLYQPKPDSWIHRLRYLWWPLLILAPLALIV 213 (340)
T ss_pred HHHHHHHHHHhccCchhhhhhhHHHHHHHHHHH--HHHHHHHHHHccccccccCCCcchhHHHHHHHHHHHHHHHHHHHH
Q ss_pred HHHHHHHHhCCCcccchhhhHHHHHHHHHHHhcc-------CCCCCCCCCCCCcCCCCCCCCChhhhhcccc-CCcchhc
Q 018484 279 TLFLSYLIFTKPLTEQHGTGLLLIAMGIILKMLP-------ENKAPANNRPNSHNNVKRRKSPEPEEKSLVE-TNGEVEE 350 (355)
Q Consensus 279 ~i~ls~l~f~~~~t~~~~iG~~lv~~Gv~ly~~~-------k~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~ 350 (355)
..+.|++.=-..+.........++++-.++|... ++|-..+.+.++-+...-|.+ ++|+.++.| ..+|+||
T Consensus 214 la~~GY~yTA~~L~~~l~~sl~l~~~~~l~~~l~~Rwl~v~~RRLA~~Ra~~kR~~~~aqr~-~~e~~~~~e~~~~~~ee 292 (340)
T PF12794_consen 214 LALLGYYYTALQLLERLILSLYLLLGWLLVYQLILRWLLVARRRLAYERAKEKRAEALAQRE-AEEEESSEEGGAEEVEE 292 (340)
T ss_pred HHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhh-cccccCCccccCCCcCC
Q ss_pred cC
Q 018484 351 KQ 352 (355)
Q Consensus 351 ~~ 352 (355)
++
T Consensus 293 ~~ 294 (340)
T PF12794_consen 293 PE 294 (340)
T ss_pred cc
No 164
>PF04145 Ctr: Ctr copper transporter family; InterPro: IPR007274 The redox active metal copper is an essential cofactor in critical biological processes such as respiration, iron transport, oxidative stress protection, hormone production, and pigmentation. A widely conserved family of high-affinity copper transport proteins (Ctr proteins) mediates copper uptake at the plasma membrane. A series of clustered methionine residues in the hydrophilic extracellular domain, and an MXXXM motif in the second transmembrane domain, are important for copper uptake. These methionines probably coordinate copper during the process of metal transport.; GO: 0005375 copper ion transmembrane transporter activity, 0035434 copper ion transmembrane transport, 0016021 integral to membrane; PDB: 2LS4_A 2LS2_A 2LS3_A.
Probab=25.11 E-value=55 Score=26.73 Aligned_cols=10 Identities=10% Similarity=0.052 Sum_probs=3.4
Q ss_pred ccchhhhHHH
Q 018484 292 TEQHGTGLLL 301 (355)
Q Consensus 292 t~~~~iG~~l 301 (355)
|..+.+|..+
T Consensus 23 s~~~~~~sci 32 (144)
T PF04145_consen 23 SAGAYVGSCI 32 (144)
T ss_dssp --HHHHHHHH
T ss_pred CHHHHHHHHH
Confidence 3344444433
No 165
>PLN03078 Putative tRNA pseudouridine synthase; Provisional
Probab=24.92 E-value=44 Score=33.86 Aligned_cols=20 Identities=30% Similarity=0.220 Sum_probs=12.4
Q ss_pred CCChhhhhccccCCcchhcc
Q 018484 332 KSPEPEEKSLVETNGEVEEK 351 (355)
Q Consensus 332 ~~~~~~~~~~~~~~~~~~~~ 351 (355)
.+.++.+...+|||||+||+
T Consensus 272 ~~~~~~~~~~~~~~~~~~e~ 291 (513)
T PLN03078 272 MSSSESEENHGEISEEDEED 291 (513)
T ss_pred cccccccccccccccchhhh
Confidence 34556666667766666665
No 166
>PF01102 Glycophorin_A: Glycophorin A; InterPro: IPR001195 Proteins in this group are responsible for the molecular basis of the blood group antigens, surface markers on the outside of the red blood cell membrane. Most of these markers are proteins, but some are carbohydrates attached to lipids or proteins [Reid M.E., Lomas-Francis C. The Blood Group Antigen FactsBook Academic Press, London / San Diego, (1997)]. Glycophorin A (PAS-2) and glycophorin B (PAS-3) belong to the MNS blood group system and are associated with antigens that include M/N, S/s, U, He, Mi(a), M(c), Vw, Mur, M(g), Vr, M(e), Mt(a), St(a), Ri(a), Cl(a), Ny(a), Hut, Hil, M(v), Far, Mit, Dantu, Hop, Nob, En(a), ENKT, amongst others. Glycophorin A is the major sialoglycoprotein of the erythrocyte membrane []. Structurally, glycophorin A consists of an N-terminal extracellular domain, heavily glycosylated on serine and threonine residues, followed by a transmembrane region and a C-terminal cytoplasmic domain. Other glycophorins in this entry such as Glycophorin B and Glycophorin E represent minor sialoglycoproteins in the erythrocyte membrane.; GO: 0016021 integral to membrane; PDB: 2KPF_B 1AFO_B 2KPE_A.
Probab=24.55 E-value=24 Score=28.59 Aligned_cols=11 Identities=9% Similarity=-0.001 Sum_probs=4.3
Q ss_pred HHHhccCCCCC
Q 018484 307 ILKMLPENKAP 317 (355)
Q Consensus 307 ~ly~~~k~~~~ 317 (355)
+.|...|+|+|
T Consensus 84 i~y~irR~~Kk 94 (122)
T PF01102_consen 84 ISYCIRRLRKK 94 (122)
T ss_dssp HHHHHHHHS--
T ss_pred HHHHHHHHhcc
Confidence 34555444444
No 167
>COG3238 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=24.40 E-value=4.3e+02 Score=22.24 Aligned_cols=103 Identities=14% Similarity=0.125 Sum_probs=55.5
Q ss_pred CchhHHHHHHHHHHHHH---HHHhccc--C--CCCCCchHHHHHHHHHHHhhHHHHHHHhhCCChh-HHHHHhhcchHHH
Q 018484 52 SYGWYFTFVQGFVYLVL---IYLQGFT--T--KQMVNPWKTYVKLSAVLMGSHGLTKGSLAFLNYP-AQIMFKSTKVLPV 123 (355)
Q Consensus 52 ~~p~~lt~~Q~~~~~~~---~~~~~~~--~--~~~~~~~~~~~~~s~~~~~~~~l~~~sL~~~s~~-~~~v~ks~~pi~v 123 (355)
..|..-++..++++.++ +.+...+ + ...+.||+.|.. +++-......+......+-.. +..+.-+...+.-
T Consensus 32 ~spl~As~isf~vGt~~L~~l~l~~~~~~~~a~~~~~pwW~~~G-G~lGa~~vt~s~~l~p~lGa~~t~~l~i~gQli~g 110 (150)
T COG3238 32 GSPLLASLISFLVGTVLLLILLLIKQGHPGLAAVASAPWWAWIG-GLLGAIFVTSSILLAPRLGAATTIALVIAGQLIMG 110 (150)
T ss_pred CChHHHHHHHHHHHHHHHHHHHHHhcCCCchhhccCCchHHHHc-cchhhhhhhhhHHhccchhHHHHHHHHHHHHHHHH
Confidence 45666666666664322 1111111 1 124568887753 222222222233333344443 4445556666666
Q ss_pred HHHHhh-hcC-CccccChhHHHHHHHHHHHHHHH
Q 018484 124 MIMGAF-IPG-LRRKYPAHEYVAALLLVFGLILF 155 (355)
Q Consensus 124 ~l~~~l-~~g-l~~~~s~~~~~~l~li~~Gv~l~ 155 (355)
++++.+ +.| -++++++.++++++++++|+.++
T Consensus 111 lliD~fG~~g~~~~~~~~~r~lgi~L~l~gil~~ 144 (150)
T COG3238 111 LLIDHFGWFGVPKRPLNLPRILGILLVLAGILLA 144 (150)
T ss_pred HHHHhhcccCCCcCCCCHHHHHHHHHHHHHHHHh
Confidence 776643 100 25889999999999999996555
No 168
>PF01528 Herpes_glycop: Herpesvirus glycoprotein M; InterPro: IPR000785 The Equid herpesvirus 1 (Equine herpesvirus 1, EHV-1) protein belongs to a family of sequences that groups together Human herpesvirus 1 (HHV-1) UL10, EHV-1 52, Human herpesvirus 3 (HHV-3) 50, Epstein-Barr virus (strain GD1) (HHV-4) (Human herpesvirus 4) BBRF3, Human herpesvirus 1 (HHV-1) 39 and Human cytomegalovirus (HHV-5) UL100. Little is yet known about the properties of the protein. However, its amino acid sequence is highly hydrophobic, containing 8 putative membrane-spanning regions, and it is therefore believed to be either membrane-associated or transmembrane.; GO: 0016020 membrane
Probab=24.13 E-value=21 Score=34.77 Aligned_cols=37 Identities=8% Similarity=-0.010 Sum_probs=0.0
Q ss_pred CCCCCCCCCCCCcCCCCCCCCC-hhhhhccccCCcchh
Q 018484 313 ENKAPANNRPNSHNNVKRRKSP-EPEEKSLVETNGEVE 349 (355)
Q Consensus 313 k~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~ 349 (355)
++++..++..++-++.+|++.+ .+.+.+...+|||||
T Consensus 337 ~y~~l~~~~~~~vk~~~~~~~~~~~~~~~~~~~~~~~~ 374 (374)
T PF01528_consen 337 RYYPLVRTVRKRVKRYIRRRRSRMRQARRSDIDDEEES 374 (374)
T ss_pred hhhhcccchHHHHHhhccccCccccCCccccccccccC
No 169
>COG4736 CcoQ Cbb3-type cytochrome oxidase, subunit 3 [Posttranslational modification, protein turnover, chaperones]
Probab=24.06 E-value=57 Score=22.95 Aligned_cols=22 Identities=14% Similarity=0.131 Sum_probs=15.2
Q ss_pred hhhHHHHHHHHHHHhccCCCCC
Q 018484 296 GTGLLLIAMGIILKMLPENKAP 317 (355)
Q Consensus 296 ~iG~~lv~~Gv~ly~~~k~~~~ 317 (355)
.+-+.+++.|++++.+.+.+++
T Consensus 15 t~~~~l~fiavi~~ayr~~~K~ 36 (60)
T COG4736 15 TIAFTLFFIAVIYFAYRPGKKG 36 (60)
T ss_pred HHHHHHHHHHHHHHHhcccchh
Confidence 3445677888888887765544
No 170
>PF02480 Herpes_gE: Alphaherpesvirus glycoprotein E; InterPro: IPR003404 Glycoprotein E (gE) of Alphaherpesvirus forms a complex with glycoprotein I (gI), functioning as an immunoglobulin G (IgG) Fc binding protein. gE is involved in virus spread but is not essential for propagation [].; GO: 0016020 membrane; PDB: 2GJ7_F 2GIY_B.
Probab=24.02 E-value=26 Score=35.02 Aligned_cols=7 Identities=0% Similarity=-0.021 Sum_probs=0.0
Q ss_pred CCCcCCC
Q 018484 322 PNSHNNV 328 (355)
Q Consensus 322 ~~~~~~~ 328 (355)
.+.|..+
T Consensus 393 ~~~YtsL 399 (439)
T PF02480_consen 393 SPVYTSL 399 (439)
T ss_dssp -------
T ss_pred CCccccC
Confidence 3444433
No 171
>PF08552 Kei1: Inositolphosphorylceramide synthase subunit Kei1; InterPro: IPR013862 This entry indicates Golgi proteins of unknown function.
Probab=23.25 E-value=3.2e+02 Score=23.98 Aligned_cols=10 Identities=10% Similarity=0.169 Sum_probs=5.5
Q ss_pred HHHHHHHhcc
Q 018484 303 AMGIILKMLP 312 (355)
Q Consensus 303 ~~Gv~ly~~~ 312 (355)
..|+.||...
T Consensus 93 ~F~~~Wf~~~ 102 (189)
T PF08552_consen 93 AFAVTWFLVI 102 (189)
T ss_pred HHHHHHHHhC
Confidence 3456666653
No 172
>PF01770 Folate_carrier: Reduced folate carrier; InterPro: IPR002666 The reduced folate carrier (a transmembrane glycoprotein) transports reduced folate into mammalian cells via the carrier mediated mechanism (as opposed to the receptor mediated mechanism) it also transports cytotoxic folate analogues used in chemotherapy [], such as methotrexate (MTX). Mammalian cells have an absolute requirement for exogenous folates which are needed for growth, and biosynthesis of macromolecules [].; GO: 0005542 folic acid binding, 0008518 reduced folate carrier activity, 0006810 transport, 0016020 membrane
Probab=22.73 E-value=3.8e+02 Score=26.62 Aligned_cols=38 Identities=16% Similarity=0.250 Sum_probs=17.2
Q ss_pred HHHHHHHHHHHHHHHHhhchHHHHHHHhHHHHHHHHHHHH
Q 018484 246 AMATFVGQVSVLSLIALFGAATTAMITTARKAVTLFLSYL 285 (355)
Q Consensus 246 ~~~~~l~~~~~~~~i~~~sa~t~svv~~~k~v~~i~ls~l 285 (355)
.+.+.+||.+.. .+..+-...+.++..-..++.+++.+
T Consensus 143 ~~s~~lgQllvs--~~~~sy~~L~~isl~~~~~a~~~~~f 180 (412)
T PF01770_consen 143 FISSLLGQLLVS--FGGVSYFQLNYISLASVSLALLIALF 180 (412)
T ss_pred HHHHHHHHHHHH--hcCCCHHHHHHHHHHHHHHHHHHHHH
Confidence 455556665433 23344444444444444444444443
No 173
>PRK11715 inner membrane protein; Provisional
Probab=21.77 E-value=8.2e+02 Score=24.49 Aligned_cols=56 Identities=14% Similarity=0.249 Sum_probs=36.2
Q ss_pred ccccChhHHHH--HHHHHHHHHHHhccCCCCCCCchhhHHHHHHHHHHHHHhHHHHHHHHHhhC
Q 018484 134 RRKYPAHEYVA--ALLLVFGLILFTMADAQTSPNFSLIGVLMISGALVMDSFLGNLQEVIFTVN 195 (355)
Q Consensus 134 ~~~~s~~~~~~--l~li~~Gv~l~~~~~~~~~~~~~~~G~~l~l~s~~~~a~~~v~~~~l~~~~ 195 (355)
+.|..+.||+- +.+++.=+.+.+++|. --++.+.++.|+.|.++.+.|...+++..
T Consensus 326 ~~~iHpiQYlLVGlAl~lFYLLLLSlSEH------igF~~AYliAa~a~v~li~~Y~~~vl~~~ 383 (436)
T PRK11715 326 KLRIHPVQYLLVGLALVLFYLLLLSLSEH------IGFTLAYLIAALACVLLIGFYLSAVLRSW 383 (436)
T ss_pred CceecHHHHHHHHHHHHHHHHHHHHHHhh------hchHHHHHHHHHHHHHHHHHHHHHHHhcc
Confidence 67888888754 3444444455555542 23555667777888888888887777654
No 174
>PF10855 DUF2648: Protein of unknown function (DUF2648); InterPro: IPR022561 This family of proteins with unknown function appears to be restricted to eubacteia.
Probab=21.28 E-value=22 Score=21.48 Aligned_cols=25 Identities=20% Similarity=0.317 Sum_probs=18.7
Q ss_pred hHHHHHHHHHHHhccCCCCCCCCCC
Q 018484 298 GLLLIAMGIILKMLPENKAPANNRP 322 (355)
Q Consensus 298 G~~lv~~Gv~ly~~~k~~~~~~~~~ 322 (355)
.+.+++.|...+.+-|++++.+++.
T Consensus 5 ~i~L~l~ga~f~~fKKyQ~~vnqap 29 (33)
T PF10855_consen 5 AIILILGGAAFYGFKKYQNHVNQAP 29 (33)
T ss_pred eehhhhhhHHHHHHHHHHHHHhcCC
Confidence 3568888988999888887666544
No 175
>TIGR02840 spore_YtaF putative sporulation protein YtaF. This protein family was identified, at the time of the publication of the Carboxydothermus hydrogenoformans genome, as having a phylogenetic profile that exactly matches the subset of the Firmicutes capable of forming endospores. The species include Bacillus anthracis, Clostridium tetani, Thermoanaerobacter tengcongensis, Geobacillus kaustophilus, etc. This protein, previously named YtaF, is therefore a putative sporulation protein.
Probab=20.80 E-value=1.8e+02 Score=25.67 Aligned_cols=44 Identities=20% Similarity=0.202 Sum_probs=20.1
Q ss_pred chHHHHHHHhHHHHHHHHHHHHHhCCCcc-cchhhhH-HHHHHHHH
Q 018484 264 GAATTAMITTARKAVTLFLSYLIFTKPLT-EQHGTGL-LLIAMGII 307 (355)
Q Consensus 264 sa~t~svv~~~k~v~~i~ls~l~f~~~~t-~~~~iG~-~lv~~Gv~ 307 (355)
.+...+++..+-+.....+|-.+-+--.. ..+|+|. .+++.|+.
T Consensus 32 ~~l~ig~~~~~~~~lg~~~G~~~~~~i~~~~~~~ig~~iLi~iG~~ 77 (206)
T TIGR02840 32 SNLIIAVISGLFIFISMLLGKFLAKFLPPKVTEILGAFILIAIGIW 77 (206)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhchhhHHHHHHHHHHHHHHH
Confidence 33444444444455555555544332112 2355554 44555654
No 176
>KOG3375 consensus Phosphoprotein/predicted coiled-coil protein [General function prediction only]
Probab=20.57 E-value=43 Score=27.93 Aligned_cols=23 Identities=26% Similarity=0.248 Sum_probs=16.0
Q ss_pred CCCCCCChhhhhccccCCcchhc
Q 018484 328 VKRRKSPEPEEKSLVETNGEVEE 350 (355)
Q Consensus 328 ~~~~~~~~~~~~~~~~~~~~~~~ 350 (355)
-.-+.||-.++++++++.+|++|
T Consensus 44 ~~~~~d~~~ee~~~~~dssed~E 66 (174)
T KOG3375|consen 44 DGAAGDPKKEESELDSDSSEDSE 66 (174)
T ss_pred cccccCcchhhhcccccccchhh
Confidence 34567888888888766655555
No 177
>KOG1442 consensus GDP-fucose transporter [Carbohydrate transport and metabolism; Posttranslational modification, protein turnover, chaperones; Intracellular trafficking, secretion, and vesicular transport]
Probab=20.31 E-value=16 Score=33.95 Aligned_cols=57 Identities=18% Similarity=0.100 Sum_probs=45.8
Q ss_pred HHHHHHHHHHhhchHHHHHHHhHHHHHHHHHHHHHhCCCcccchhhhHHHHHHHHHH
Q 018484 252 GQVSVLSLIALFGAATTAMITTARKAVTLFLSYLIFTKPLTEQHGTGLLLIAMGIIL 308 (355)
Q Consensus 252 ~~~~~~~~i~~~sa~t~svv~~~k~v~~i~ls~l~f~~~~t~~~~iG~~lv~~Gv~l 308 (355)
+..+-.+|++.++-..+-+--.+-.++++++++++++++-+..-..+..+++.|..+
T Consensus 115 mI~fnnlcL~yVgVaFYyvgRsLttvFtVlLtyvllkqkTs~~~~~~C~lIi~GF~l 171 (347)
T KOG1442|consen 115 MISFNNLCLKYVGVAFYYVGRSLTTVFTVLLTYVLLKQKTSFFALGCCLLIILGFGL 171 (347)
T ss_pred ehhccceehhhcceEEEEeccchhhhHHHHhHHhhcccccccccceeehhheehhee
Confidence 344567788888888777877888899999999999998888777777777777654
No 178
>KOG0493 consensus Transcription factor Engrailed, contains HOX domain [General function prediction only]
Probab=20.19 E-value=61 Score=29.71 Aligned_cols=29 Identities=24% Similarity=0.248 Sum_probs=21.6
Q ss_pred cCCCCCCCCCCCCcCCCCCCCCChhhhhc
Q 018484 312 PENKAPANNRPNSHNNVKRRKSPEPEEKS 340 (355)
Q Consensus 312 ~k~~~~~~~~~~~~~~~~~~~~~~~~~~~ 340 (355)
..+-..+.+..++|+|.|+++|+.+|||.
T Consensus 220 cTRYSDRPSsGPR~Rk~kkkk~~~~eeKR 248 (342)
T KOG0493|consen 220 CTRYSDRPSSGPRHRKPKKKKSSSKEEKR 248 (342)
T ss_pred eecccCCCCCCcccccccccCCccchhcC
Confidence 34445556788999999999987766664
Done!