Query 018484
Match_columns 355
No_of_seqs 209 out of 1950
Neff 8.2
Searched_HMMs 29240
Date Mon Mar 25 15:59:36 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/018484.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/018484hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 2i68_A Protein EMRE; transmemb 98.6 1.4E-07 4.7E-12 77.4 7.4 70 244-313 35-105 (137)
2 3b5d_A Multidrug transporter E 98.0 2.5E-05 8.4E-10 61.4 8.8 69 89-159 36-105 (110)
3 3b5d_A Multidrug transporter E 98.0 5.3E-05 1.8E-09 59.5 10.0 67 246-312 37-104 (110)
4 2i68_A Protein EMRE; transmemb 97.9 2.9E-05 1E-09 63.4 7.5 69 89-159 36-105 (137)
5 3rko_J NADH-quinone oxidoreduc 65.7 51 0.0017 27.6 10.0 24 281-304 128-151 (184)
6 3l1l_A Arginine/agmatine antip 55.5 71 0.0024 29.7 10.4 25 294-318 409-433 (445)
7 4djk_A Probable glutamate/gamm 25.2 62 0.0021 30.8 4.5 17 297-313 450-466 (511)
8 3mkt_A Multi antimicrobial ext 24.3 4.1E+02 0.014 24.2 14.9 16 271-286 392-408 (460)
9 3rvy_A ION transport protein; 21.9 40 0.0014 29.8 2.2 16 302-317 230-245 (285)
10 4asn_A TUBR; transcription, tu 20.7 21 0.00072 25.6 0.0 9 342-350 92-100 (101)
No 1
>2i68_A Protein EMRE; transmembrane protein, small-multidrug resistance, transporter, homodimer, dual topology, transport protein; NMR {Escherichia coli}
Probab=98.55 E-value=1.4e-07 Score=77.36 Aligned_cols=70 Identities=16% Similarity=0.162 Sum_probs=50.4
Q ss_pred HHHHHHHHHHHHHHHHHHhhchHHHHHH-HhHHHHHHHHHHHHHhCCCcccchhhhHHHHHHHHHHHhccC
Q 018484 244 FEAMATFVGQVSVLSLIALFGAATTAMI-TTARKAVTLFLSYLIFTKPLTEQHGTGLLLIAMGIILKMLPE 313 (355)
Q Consensus 244 l~~~~~~l~~~~~~~~i~~~sa~t~svv-~~~k~v~~i~ls~l~f~~~~t~~~~iG~~lv~~Gv~ly~~~k 313 (355)
+..++..++++++...+++.++..+..+ ..+.++++.++|+++|||++|+.+++|++++++|+++.+..+
T Consensus 35 l~i~~~~ls~~l~~~alk~i~~s~ay~iw~~l~pv~~~l~g~l~lgE~ls~~~~~Gi~LIi~GV~ll~~~~ 105 (137)
T 2i68_A 35 GTIICYCASFWLLAQTLAYIPTGIAYAIWSGVGIVLISLLSWGFFGQRLDLPAIIGMMLICAGVLIINLLS 105 (137)
T ss_dssp HHHHHHHHHHHHHHHHHC-----CHHHHHHHHHHHHHHHHHHHHHC------CHHHHHHHHHHHHHHHHC-
T ss_pred HHHHHHHHHHHHHHHHHHhCChhHHHHHHHHHHHHHHHHHHHHHhCCCCCHHHHHHHHHHHHHHHHHhcCC
Confidence 3345566778889999999999988777 899999999999999999999999999999999999987543
No 2
>3b5d_A Multidrug transporter EMRE; helical membrane protein, multidrug resistance transporter, SMR, antiport, inner membrane, transmembrane; HET: P4P; 3.80A {Escherichia coli K12} PDB: 3b61_A 3b62_A*
Probab=98.01 E-value=2.5e-05 Score=61.45 Aligned_cols=69 Identities=9% Similarity=0.177 Sum_probs=61.8
Q ss_pred HHHHHHhhHHHHHHHhhCCChhHHHHH-hhcchHHHHHHHhhhcCCccccChhHHHHHHHHHHHHHHHhccC
Q 018484 89 LSAVLMGSHGLTKGSLAFLNYPAQIMF-KSTKVLPVMIMGAFIPGLRRKYPAHEYVAALLLVFGLILFTMAD 159 (355)
Q Consensus 89 ~s~~~~~~~~l~~~sL~~~s~~~~~v~-ks~~pi~v~l~~~l~~gl~~~~s~~~~~~l~li~~Gv~l~~~~~ 159 (355)
..+++..+..+...+++++|.+..-.+ ....|+.+.++++++ ++|++++.+++++.++++|+.+....+
T Consensus 36 ~~~~~~~~~~~~~~al~~~p~s~ay~i~~g~~~v~~~l~~~~~--~~E~~s~~~~~Gi~lIi~Gv~~l~~~~ 105 (110)
T 3b5d_A 36 TIICYCASFWLLAQTLAYIPTGIAYAIWSGVGIVLISLLSWGF--FGQRLDLPAIIGMMLICAGVLIINLLS 105 (110)
T ss_pred HHHHHHHHHHHHHHHHHhCChhhHHHHHhhHHHHHHHHHHHHH--hCCCCCHHHHHHHHHHHHHHHHHhcCC
Confidence 345677888899999999999988666 899999999999999 899999999999999999999887654
No 3
>3b5d_A Multidrug transporter EMRE; helical membrane protein, multidrug resistance transporter, SMR, antiport, inner membrane, transmembrane; HET: P4P; 3.80A {Escherichia coli K12} PDB: 3b61_A 3b62_A*
Probab=97.97 E-value=5.3e-05 Score=59.53 Aligned_cols=67 Identities=16% Similarity=0.195 Sum_probs=58.2
Q ss_pred HHHHHHHHHHHHHHHHhhchHHHHHH-HhHHHHHHHHHHHHHhCCCcccchhhhHHHHHHHHHHHhcc
Q 018484 246 AMATFVGQVSVLSLIALFGAATTAMI-TTARKAVTLFLSYLIFTKPLTEQHGTGLLLIAMGIILKMLP 312 (355)
Q Consensus 246 ~~~~~l~~~~~~~~i~~~sa~t~svv-~~~k~v~~i~ls~l~f~~~~t~~~~iG~~lv~~Gv~ly~~~ 312 (355)
.++..++..+....+++.+...+..+ ..+.++.+.++|+++|||++|+.+++|++++++|++.-...
T Consensus 37 ~~~~~~~~~~~~~al~~~p~s~ay~i~~g~~~v~~~l~~~~~~~E~~s~~~~~Gi~lIi~Gv~~l~~~ 104 (110)
T 3b5d_A 37 IICYCASFWLLAQTLAYIPTGIAYAIWSGVGIVLISLLSWGFFGQRLDLPAIIGMMLICAGVLIINLL 104 (110)
T ss_pred HHHHHHHHHHHHHHHHhCChhhHHHHHhhHHHHHHHHHHHHHhCCCCCHHHHHHHHHHHHHHHHHhcC
Confidence 34445667778889999998888666 89999999999999999999999999999999999987654
No 4
>2i68_A Protein EMRE; transmembrane protein, small-multidrug resistance, transporter, homodimer, dual topology, transport protein; NMR {Escherichia coli}
Probab=97.89 E-value=2.9e-05 Score=63.41 Aligned_cols=69 Identities=9% Similarity=0.177 Sum_probs=50.3
Q ss_pred HHHHHHhhHHHHHHHhhCCChhHHHHH-hhcchHHHHHHHhhhcCCccccChhHHHHHHHHHHHHHHHhccC
Q 018484 89 LSAVLMGSHGLTKGSLAFLNYPAQIMF-KSTKVLPVMIMGAFIPGLRRKYPAHEYVAALLLVFGLILFTMAD 159 (355)
Q Consensus 89 ~s~~~~~~~~l~~~sL~~~s~~~~~v~-ks~~pi~v~l~~~l~~gl~~~~s~~~~~~l~li~~Gv~l~~~~~ 159 (355)
..+++.++.++.+.+++++|.+....+ .+..|++++++++++ ++|++++.+++++.++++|+.+....+
T Consensus 36 ~i~~~~ls~~l~~~alk~i~~s~ay~iw~~l~pv~~~l~g~l~--lgE~ls~~~~~Gi~LIi~GV~ll~~~~ 105 (137)
T 2i68_A 36 TIICYCASFWLLAQTLAYIPTGIAYAIWSGVGIVLISLLSWGF--FGQRLDLPAIIGMMLICAGVLIINLLS 105 (137)
T ss_dssp HHHHHHHHHHHHHHHHC-----CHHHHHHHHHHHHHHHHHHHH--HC------CHHHHHHHHHHHHHHHHC-
T ss_pred HHHHHHHHHHHHHHHHHhCChhHHHHHHHHHHHHHHHHHHHHH--hCCCCCHHHHHHHHHHHHHHHHHhcCC
Confidence 345677888999999999999977666 899999999999999 899999999999999999999987654
No 5
>3rko_J NADH-quinone oxidoreductase subunit J; complex I, proton pump, membrane protein, Na ubiquinone, cytoplasmic membrane; HET: LFA CA7; 3.00A {Escherichia coli}
Probab=65.68 E-value=51 Score=27.55 Aligned_cols=24 Identities=17% Similarity=0.160 Sum_probs=19.4
Q ss_pred HHHHHHhCCCcccchhhhHHHHHH
Q 018484 281 FLSYLIFTKPLTEQHGTGLLLIAM 304 (355)
Q Consensus 281 ~ls~l~f~~~~t~~~~iG~~lv~~ 304 (355)
-+|..+|++.+=+....|+.|..+
T Consensus 128 ~iG~~Lft~Y~lpFElaSvlLLvA 151 (184)
T 3rko_J 128 AVGITLFGPYVLAVELASMLLLAG 151 (184)
T ss_dssp HHHHHHTTTSHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHH
Confidence 467788999999999999977544
No 6
>3l1l_A Arginine/agmatine antiporter; TCDB 2.A.3.2.5, ADIC, Arg-bound, amino-acid transport, cell inner membrane, cell membrane, membrane; HET: ARG BNG; 3.00A {Escherichia coli} PDB: 3h5m_A* 3h6b_A 3lrb_A 3lrc_A 3ob6_A* 3hqk_A 3ncy_A
Probab=55.49 E-value=71 Score=29.71 Aligned_cols=25 Identities=8% Similarity=-0.029 Sum_probs=18.8
Q ss_pred chhhhHHHHHHHHHHHhccCCCCCC
Q 018484 294 QHGTGLLLIAMGIILKMLPENKAPA 318 (355)
Q Consensus 294 ~~~iG~~lv~~Gv~ly~~~k~~~~~ 318 (355)
..+.|..+...|+.+|.+.+++.++
T Consensus 409 ~~~~~~~~~~~g~~~y~~~~~~~~~ 433 (445)
T 3l1l_A 409 EVMWSFVTLMVITAMYALNYNRLHK 433 (445)
T ss_dssp HHHHHHHHHHHHHHHHHHHHSTTCC
T ss_pred HHHHHHHHHHHHHHHHHHHhhhccc
Confidence 3556888899999999887766543
No 7
>4djk_A Probable glutamate/gamma-aminobutyrate antiporter; LEUT, glutamate-GABA antiporter, transport protein; 3.10A {Escherichia coli} PDB: 4dji_A
Probab=25.19 E-value=62 Score=30.84 Aligned_cols=17 Identities=6% Similarity=0.167 Sum_probs=7.6
Q ss_pred hhHHHHHHHHHHHhccC
Q 018484 297 TGLLLIAMGIILKMLPE 313 (355)
Q Consensus 297 iG~~lv~~Gv~ly~~~k 313 (355)
.+..+++.++.++.+.+
T Consensus 450 ~~~~~~~~~i~~~~~~~ 466 (511)
T 4djk_A 450 VVSFLVVLALPFILYAV 466 (511)
T ss_dssp HHHHHHHHHHHHHHHHC
T ss_pred HHHHHHHHHHHHHHHHH
Confidence 34444444454444433
No 8
>3mkt_A Multi antimicrobial extrusion protein (Na(+)/drug antiporter) MATE-like MDR efflux...; multidrug transporter, cation-bound, transport protein; 3.65A {Vibrio cholerae} PDB: 3mku_A
Probab=24.28 E-value=4.1e+02 Score=24.18 Aligned_cols=16 Identities=19% Similarity=0.175 Sum_probs=7.0
Q ss_pred HHhHHH-HHHHHHHHHH
Q 018484 271 ITTARK-AVTLFLSYLI 286 (355)
Q Consensus 271 v~~~k~-v~~i~ls~l~ 286 (355)
...+.- ++.+.+++++
T Consensus 392 ~~~~~~~~~~i~l~~~l 408 (460)
T 3mkt_A 392 RTFISYWVLGLPTGYIL 408 (460)
T ss_dssp HHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHH
Confidence 333433 4445555443
No 9
>3rvy_A ION transport protein; tetrameric ION channel, voltage-gated sodium-selective ION C membrane, metal transport; HET: PX4; 2.70A {Arcobacter butzleri} PDB: 3rvz_A* 4ekw_A* 3rw0_A*
Probab=21.91 E-value=40 Score=29.75 Aligned_cols=16 Identities=6% Similarity=0.146 Sum_probs=5.8
Q ss_pred HHHHHHHHhccCCCCC
Q 018484 302 IAMGIILKMLPENKAP 317 (355)
Q Consensus 302 v~~Gv~ly~~~k~~~~ 317 (355)
.+.|++..++.+.+++
T Consensus 230 l~~aii~~~f~~~~~~ 245 (285)
T 3rvy_A 230 LVVAICVDAMAILNQK 245 (285)
T ss_dssp HHHHHHHHHC------
T ss_pred HHHHHHHHHHHHHHHH
Confidence 3556666666554433
No 10
>4asn_A TUBR; transcription, tubulin, FTSZ, segregation, partition; 3.50A {Bacillus megaterium}
Probab=20.68 E-value=21 Score=25.59 Aligned_cols=9 Identities=67% Similarity=0.645 Sum_probs=0.0
Q ss_pred ccCCcchhc
Q 018484 342 VETNGEVEE 350 (355)
Q Consensus 342 ~~~~~~~~~ 350 (355)
+|||||+||
T Consensus 92 geeneevee 100 (101)
T 4asn_A 92 GEENEEVEE 100 (101)
T ss_dssp ---------
T ss_pred Ccccchhcc
Confidence 344444444
Done!