Query 018484
Match_columns 355
No_of_seqs 209 out of 1950
Neff 8.2
Searched_HMMs 13730
Date Mon Mar 25 15:59:44 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/018484.a3m -d /work/01045/syshi/HHdatabase/scop70.hhm -o /work/01045/syshi/hhsearch_scop/018484hhsearch_scop -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 d3dtub2 f.17.2.1 (B:30-129) Ba 30.7 14 0.00099 25.8 2.5 26 296-321 36-61 (100)
2 d1fftb2 f.17.2.1 (B:27-117) Cy 29.9 12 0.0009 25.6 2.1 25 297-321 26-50 (91)
3 d2r6gf1 e.70.1.1 (F:13-260) Ma 21.6 1.3E+02 0.0098 24.1 7.6 54 85-144 4-57 (248)
4 d3ehbb2 f.17.2.1 (B:1-107) Bac 21.0 32 0.0023 24.1 3.0 23 297-319 43-65 (107)
5 d2e74g1 f.23.26.1 (G:9-35) Pet 20.6 28 0.002 17.6 1.8 17 296-312 2-18 (27)
6 d1pw4a_ f.38.1.1 (A:) Glycerol 15.1 2.8E+02 0.021 22.4 18.3 20 295-314 187-206 (447)
7 d1nexa1 a.157.1.1 (A:116-185) 12.0 26 0.0019 22.7 0.3 15 332-346 46-60 (70)
8 d1v54j_ f.23.4.1 (J:) Mitochon 7.9 37 0.0027 21.1 -0.1 29 3-31 15-43 (58)
9 d1vpua_ g.34.1.1 (A:) HIV-1 VP 7.9 48 0.0035 19.3 0.4 21 335-355 12-32 (45)
10 d1kqfb2 f.23.22.1 (B:246-290) 5.3 2.4E+02 0.018 16.1 2.6 27 284-310 5-31 (45)
No 1
>d3dtub2 f.17.2.1 (B:30-129) Bacterial aa3 type cytochrome c oxidase subunit II {Rhodobacter sphaeroides [TaxId: 1063]}
Probab=30.68 E-value=14 Score=25.78 Aligned_cols=26 Identities=12% Similarity=0.017 Sum_probs=16.0
Q ss_pred hhhHHHHHHHHHHHhccCCCCCCCCC
Q 018484 296 GTGLLLIAMGIILKMLPENKAPANNR 321 (355)
Q Consensus 296 ~iG~~lv~~Gv~ly~~~k~~~~~~~~ 321 (355)
..++.+...|...|...|+|.++++.
T Consensus 36 ~~~I~~~V~~~l~~~~~~~r~~~~~~ 61 (100)
T d3dtub2 36 IAAITIFVTLLILYAVWRFHEKRNKV 61 (100)
T ss_dssp HHHHHHHHHHHHHHHHHHHBTTTCCS
T ss_pred HHHHHHHHHHHHHHHhhhhhccCCCC
Confidence 34455566777777777766554433
No 2
>d1fftb2 f.17.2.1 (B:27-117) Cytochrome O ubiquinol oxidase, subunit II {Escherichia coli [TaxId: 562]}
Probab=29.94 E-value=12 Score=25.60 Aligned_cols=25 Identities=8% Similarity=0.052 Sum_probs=17.0
Q ss_pred hhHHHHHHHHHHHhccCCCCCCCCC
Q 018484 297 TGLLLIAMGIILKMLPENKAPANNR 321 (355)
Q Consensus 297 iG~~lv~~Gv~ly~~~k~~~~~~~~ 321 (355)
+.+.+...|..+|...|+|++++++
T Consensus 26 ~iv~v~V~~~~~~~~~ryR~~~~~~ 50 (91)
T d1fftb2 26 LIVVIPAILMAVGFAWKYRASNKDA 50 (91)
T ss_dssp TTTTTHHHHHHHTTTTTTTTSTTTC
T ss_pred HHHHHHHHHHHHhhheeeeccCCcc
Confidence 3445567778888888887665543
No 3
>d2r6gf1 e.70.1.1 (F:13-260) Maltose transport system permease protein MalF {Escherichia coli [TaxId: 562]}
Probab=21.63 E-value=1.3e+02 Score=24.05 Aligned_cols=54 Identities=19% Similarity=-0.030 Sum_probs=36.2
Q ss_pred HHHHHHHHHHhhHHHHHHHhhCCChhHHHHHhhcchHHHHHHHhhhcCCccccChhHHHH
Q 018484 85 TYVKLSAVLMGSHGLTKGSLAFLNYPAQIMFKSTKVLPVMIMGAFIPGLRRKYPAHEYVA 144 (355)
Q Consensus 85 ~~~~~s~~~~~~~~l~~~sL~~~s~~~~~v~ks~~pi~v~l~~~l~~gl~~~~s~~~~~~ 144 (355)
+|+.++++.+...+.....+..-+..+..++ .+.+.++.+++ +.||.-+.+|+.
T Consensus 4 K~~ll~l~~a~~~~~~~~~~~~~~~~~a~~~----~~~~~~~~~vy--~s~r~~p~kyi~ 57 (248)
T d2r6gf1 4 KWSVLGLLGLLVGYLVVLMYAQGEYLFAITT----LILSSAGLYIF--ANRKAYAWRYVY 57 (248)
T ss_dssp THHHHHHHHHHHHHTHHHHHGGGCHHHHHHH----HHHHHHHHHHH--SSSCCTTHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHcchHHHHHHH----HHHHHheEEEE--EccCccceehhh
Confidence 4677888887777776677776676665544 35556667777 666666666653
No 4
>d3ehbb2 f.17.2.1 (B:1-107) Bacterial aa3 type cytochrome c oxidase subunit II {Paracoccus denitrificans [TaxId: 266]}
Probab=21.01 E-value=32 Score=24.06 Aligned_cols=23 Identities=17% Similarity=0.183 Sum_probs=13.7
Q ss_pred hhHHHHHHHHHHHhccCCCCCCC
Q 018484 297 TGLLLIAMGIILKMLPENKAPAN 319 (355)
Q Consensus 297 iG~~lv~~Gv~ly~~~k~~~~~~ 319 (355)
.++.+...|..+|...+.|++++
T Consensus 43 ~~I~~~V~~~~~~~~~~~r~~~~ 65 (107)
T d3ehbb2 43 TAVTIFVCLLLLICIVRFNRRAN 65 (107)
T ss_dssp HHHHHHHHHHHHHHHHHSBTTTS
T ss_pred HHHHHHHHHHHHHHhhhhhccCC
Confidence 34455566777777766665543
No 5
>d2e74g1 f.23.26.1 (G:9-35) PetG subunit of the cytochrome b6f complex {Mastigocladus laminosus [TaxId: 83541]}
Probab=20.63 E-value=28 Score=17.57 Aligned_cols=17 Identities=18% Similarity=0.241 Sum_probs=9.6
Q ss_pred hhhHHHHHHHHHHHhcc
Q 018484 296 GTGLLLIAMGIILKMLP 312 (355)
Q Consensus 296 ~iG~~lv~~Gv~ly~~~ 312 (355)
++|.+++..|...|...
T Consensus 2 vlgli~~tl~glf~aay 18 (27)
T d2e74g1 2 VLGLVFATLGGLFYAAY 18 (27)
T ss_dssp HHHHHHHHHHHHHHHHH
T ss_pred eeeehHHHHHHHHHHHH
Confidence 35666666555555433
No 6
>d1pw4a_ f.38.1.1 (A:) Glycerol-3-phosphate transporter {Escherichia coli [TaxId: 562]}
Probab=15.08 E-value=2.8e+02 Score=22.40 Aligned_cols=20 Identities=5% Similarity=0.014 Sum_probs=10.3
Q ss_pred hhhhHHHHHHHHHHHhccCC
Q 018484 295 HGTGLLLIAMGIILKMLPEN 314 (355)
Q Consensus 295 ~~iG~~lv~~Gv~ly~~~k~ 314 (355)
...+....+.++..+...+.
T Consensus 187 ~~~~~~~~~~~~~~~~~~~~ 206 (447)
T d1pw4a_ 187 YMPAFCAILVALFAFAMMRD 206 (447)
T ss_dssp HHHHHHHHHHHHHHHHHCCC
T ss_pred hhhhhhHHHHHHHHHHhccc
Confidence 34455555555655555443
No 7
>d1nexa1 a.157.1.1 (A:116-185) Centromere DNA-binding protein complex Cbf3 subunit D, CBF3D {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}
Probab=11.98 E-value=26 Score=22.68 Aligned_cols=15 Identities=27% Similarity=0.412 Sum_probs=9.7
Q ss_pred CCChhhhhccccCCc
Q 018484 332 KSPEPEEKSLVETNG 346 (355)
Q Consensus 332 ~~~~~~~~~~~~~~~ 346 (355)
++|++..+-.+.+|+
T Consensus 46 kt~eeiR~~f~I~~D 60 (70)
T d1nexa1 46 RSPEEIRRTFNIVND 60 (70)
T ss_dssp CCHHHHHHHHTCCCC
T ss_pred CCHHHHHHHhCCCCC
Confidence 567776666666654
No 8
>d1v54j_ f.23.4.1 (J:) Mitochondrial cytochrome c oxidase subunit VIIa {Cow (Bos taurus) [TaxId: 9913]}
Probab=7.91 E-value=37 Score=21.07 Aligned_cols=29 Identities=14% Similarity=0.131 Sum_probs=16.6
Q ss_pred cccccceEEeeeCCCCchhHHHHHHHHHH
Q 018484 3 HEEQARSLFGVSLSDRPRWQQFLICSSGF 31 (355)
Q Consensus 3 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~i 31 (355)
|++.+++++|......=...-..+|++|.
T Consensus 15 ~~g~PVhLKGG~~D~~LYr~Tm~L~~~G~ 43 (58)
T d1v54j_ 15 DNGLPVHLKGGATDNILYRVTMTLCLGGT 43 (58)
T ss_dssp SSCCCTTTTTCHHHHHHHHHHHHHHHHHH
T ss_pred CCCceEEecCCcchHHHHHHHHHHHHHHH
Confidence 45667888887755433333345555553
No 9
>d1vpua_ g.34.1.1 (A:) HIV-1 VPU cytoplasmic domain {Human immunodeficiency virus type 1 [TaxId: 11676]}
Probab=7.88 E-value=48 Score=19.28 Aligned_cols=21 Identities=43% Similarity=0.465 Sum_probs=14.3
Q ss_pred hhhhhccccCCcchhccCCCC
Q 018484 335 EPEEKSLVETNGEVEEKQPLV 355 (355)
Q Consensus 335 ~~~~~~~~~~~~~~~~~~~~~ 355 (355)
+|.|.|-.|.+|+.||-..||
T Consensus 12 ERAEDSGNESeGD~eELs~lv 32 (45)
T d1vpua_ 12 ERAEDSGNESEGDQEELSALV 32 (45)
T ss_dssp HTTCHHHHTTTTHHHHTCSSC
T ss_pred HHcccCCCCCcccHHHHHHHH
Confidence 456677777788888765543
No 10
>d1kqfb2 f.23.22.1 (B:246-290) Iron-sulfur subunit of formate dehydrogenase N, transmembrane anchor {Escherichia coli [TaxId: 562]}
Probab=5.26 E-value=2.4e+02 Score=16.14 Aligned_cols=27 Identities=15% Similarity=0.337 Sum_probs=19.0
Q ss_pred HHHhCCCcccchhhhHHHHHHHHHHHh
Q 018484 284 YLIFTKPLTEQHGTGLLLIAMGIILKM 310 (355)
Q Consensus 284 ~l~f~~~~t~~~~iG~~lv~~Gv~ly~ 310 (355)
+-+|+...-+...+|+..+.+|.++.-
T Consensus 5 V~lWKgv~Kpl~~~~~~~~~~~~~fHY 31 (45)
T d1kqfb2 5 VSLWKGALKPLAAAGFIATFAGLIFHY 31 (45)
T ss_dssp HHHHHTTHHHHHHHHHHHHHHHHHHHH
T ss_pred hHHhhhhHHHHHHHHHHHHHHHHHHhh
Confidence 445666777778888888777776643
Done!