BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 018486
(355 letters)
Database: swissprot
539,616 sequences; 191,569,459 total letters
Searching..................................................done
>sp|Q9C7N2|CAD1_ARATH MACPF domain-containing protein CAD1 OS=Arabidopsis thaliana
GN=CAD1 PE=2 SV=1
Length = 561
Score = 546 bits (1408), Expect = e-155, Method: Compositional matrix adjust.
Identities = 261/340 (76%), Positives = 291/340 (85%), Gaps = 1/340 (0%)
Query: 5 IATTLRYSIQALGRGFDVTSDIRLLYCKGAPGSRLVHIDEDHHAGDLVVSDGVLVPNVSV 64
+ TTLR +IQALGRGFDVTSD+RLLYCKGAPGSRLV I+E + DL +S G L+PNV
Sbjct: 17 LTTTLRNAIQALGRGFDVTSDVRLLYCKGAPGSRLVRIEEGQNR-DLELSHGFLLPNVPA 75
Query: 65 DIECSKGNRSIERIPVCSFHEMAGYFNEKSGISGNIPLGSFNAMFNFTGCWQADAAATKS 124
DI+CS+GN +RI VCSFHEMA FN +SG+ GNIPLG FNAMFN+TG WQ DAA+TKS
Sbjct: 76 DIDCSRGNSGTQRISVCSFHEMAEEFNVRSGVKGNIPLGCFNAMFNYTGSWQVDAASTKS 135
Query: 125 LAMVGNFISLYKVKLAKLNLVLREEIRRAVPYSWDPPLLASFIENYGTHIVTSITIGGRD 184
LA+VG FI LY VKLAKL LVL EIRRAVP SWDP LASFIENYGTHIVTS+TIGGRD
Sbjct: 136 LALVGYFIPLYDVKLAKLTLVLHNEIRRAVPSSWDPASLASFIENYGTHIVTSVTIGGRD 195
Query: 185 VVYIRQHQSSPLSMMDIENYVKDIGDERFMDSKSQSSAAPLKYKDKDVTVIFRRRGGDDL 244
VVYIRQHQSSPL + +IENYV D+ RF +++SQS PLKYKDKD+TVIFRRRGGDDL
Sbjct: 196 VVYIRQHQSSPLPVSEIENYVNDMIKHRFHEAESQSITGPLKYKDKDITVIFRRRGGDDL 255
Query: 245 EQSHAKWAETVQLAPDVINMTFTPIVSLLEGVPGIKHLARAIELYLEYKPPIEDLQYFLD 304
EQSHA+WAETV APD+INMTFTPIVSLLEGVPG++HL RAIELYLEYKPPIEDLQYFLD
Sbjct: 256 EQSHARWAETVPAAPDIINMTFTPIVSLLEGVPGLRHLTRAIELYLEYKPPIEDLQYFLD 315
Query: 305 YQIPRVWAPQHSNIQRKEPVCSSLQFSLMGPKLYISPDQV 344
YQI R WAP+ SN+QRKEPVCSSLQFSLMGPKL+IS DQV
Sbjct: 316 YQIARAWAPEQSNLQRKEPVCSSLQFSLMGPKLFISADQV 355
>sp|Q9STW5|MACP2_ARATH MACPF domain-containing protein At4g24290 OS=Arabidopsis thaliana
GN=At4g24290 PE=2 SV=1
Length = 606
Score = 315 bits (806), Expect = 4e-85, Method: Compositional matrix adjust.
Identities = 161/360 (44%), Positives = 227/360 (63%), Gaps = 31/360 (8%)
Query: 12 SIQALGRGFDVTSDIRLLYCKG-APGSRLVHIDEDHHAGDLVVSDGVLVPNVSVDIECSK 70
+I ++G G+D+ D+RL YCKG + SRL+ I E ++V+ G+ +PNVS I+C K
Sbjct: 14 AIGSIGCGYDLAIDLRLKYCKGGSKDSRLLDIKEGDDNCEIVLPGGISIPNVSKSIKCDK 73
Query: 71 GNRSIERIPVCSFHEMAGYFNEKSGISGNIPLGSFNAMFNFTGCWQADAAATKSLAMVGN 130
G R R + F +MA FN++ ++G IP G FNAMF F+ CWQ DAA TK+LA G
Sbjct: 74 GERMRFRSDILPFQQMAEQFNQELSLAGKIPSGLFNAMFEFSSCWQKDAAYTKNLAFDGV 133
Query: 131 FISLYKVKLAKLNLVLREEIRRAVPYSWDPPLLASFIENYGTHIVTSITIGGRDVVYIRQ 190
FISLY V L K ++LRE +++AVP +WDP LA FI+ YGTHI+ S+ +GG+DV+Y +Q
Sbjct: 134 FISLYSVALDKSQVLLREHVKQAVPSTWDPAALARFIDIYGTHIIVSVKMGGKDVIYAKQ 193
Query: 191 HQSSPLSMMDIENYVKDIGDERFMD---------------SKSQSSAAPLKYKD------ 229
SS L D++ +K++ D+RF++ SK ++ L++ D
Sbjct: 194 QHSSKLQPEDLQKRLKEVADKRFVEASVVHNTGSERVQASSKVETKEQRLRFADTSSLGS 253
Query: 230 ----KDVTVIFRRRGGDDLEQ-SHAKWAETVQLAPDVINMTFTPIVSLLEGVPGIKHLAR 284
+D + +RRGG+D H +W +TVQ+ PDVI+M+F PI SLL GVPG L+
Sbjct: 254 YANKEDYVFMCKRRGGNDNRNLMHNEWLQTVQMEPDVISMSFIPITSLLNGVPGSGFLSH 313
Query: 285 AIELYLEYKPPIEDLQYFLDYQIPRVWAPQHSNI----QRKEPVCSSLQFSLMGPKLYIS 340
AI LYL YKPPIE+L FL++Q+PR WAP S + QRK+ C+SLQFS GPKLY++
Sbjct: 314 AINLYLRYKPPIEELHQFLEFQLPRQWAPVFSELPLGPQRKQQSCASLQFSFFGPKLYVN 373
>sp|Q9SGN6|NSL1_ARATH MACPF domain-containing protein NSL1 OS=Arabidopsis thaliana
GN=NSL1 PE=1 SV=1
Length = 612
Score = 303 bits (777), Expect = 1e-81, Method: Compositional matrix adjust.
Identities = 159/367 (43%), Positives = 225/367 (61%), Gaps = 35/367 (9%)
Query: 12 SIQALGRGFDVTSDIRLLYCKGAP-GSRLVHIDEDHHAGDLVVSDGVLVPNVSVDIECSK 70
++ +G G+D+ SD+R CK P GSRLV ID + DL+ G++V NVS I+C K
Sbjct: 18 AVSVIGLGYDLCSDVRFSACKTTPDGSRLVEIDPTRNR-DLIFPGGIVVNNVSSSIKCDK 76
Query: 71 GNRSIERIPVCSFHEMAGYFNEKSGISGNIPLGSFNAMFNFTGCWQADAAATKSLAMVGN 130
G R+ R + SF++M+ FN+ +SG IP G FN MF F+ CW DA++ K+LA G
Sbjct: 77 GERTRLRSDILSFNQMSEKFNQDMCLSGKIPSGMFNNMFAFSKCWPKDASSVKTLAYDGW 136
Query: 131 FISLYKVKLAKLNLVLREEIRRAVPYSWDPPLLASFIENYGTHIVTSITIGGRDVVYIRQ 190
FISLY V++ + L LR+E++R VP SWD LA FIE YGTH+V +T+GG+DV++++Q
Sbjct: 137 FISLYSVEIVRKQLTLRDEVKREVPSSWDSAALAGFIEKYGTHVVVGVTMGGKDVIHVKQ 196
Query: 191 HQSSPLSMMDIENYVKDIGDERF----MDSKSQ-------------------------SS 221
+ S +I+ +K GDERF ++SKS SS
Sbjct: 197 MRKSNHEPEEIQKMLKHWGDERFCVDPVESKSPASVYSGKPKEENLLQWGLQPFGTSVSS 256
Query: 222 AAPLKYKDKDVTVIFRRRGGDDLEQSHAKWAETVQLAPDVINMTFTPIVSLLEGVPGIKH 281
A + K++++ + RRGG DL QSH +W TV AP+VI+M F PI SLL G+PG
Sbjct: 257 AVVMHTKNEEIMRVCIRRGGVDLGQSHERWLSTVSQAPNVISMCFVPITSLLSGLPGTGF 316
Query: 282 LARAIELYLEYKPPIEDLQYFLDYQIPRVWAPQHSN----IQRKEPVCSSLQFSLMGPKL 337
L+ A+ LYL YKPPIE+L FL++Q+PR WAP + + ++R + SLQFSLMGPKL
Sbjct: 317 LSHAVNLYLRYKPPIEELHQFLEFQLPRQWAPVYGDLPLGLRRSKQSSPSLQFSLMGPKL 376
Query: 338 YISPDQV 344
Y++ +V
Sbjct: 377 YVNTSKV 383
>sp|Q8L612|MACP1_ARATH MACPF domain-containing protein At1g14780 OS=Arabidopsis thaliana
GN=At1g14780 PE=2 SV=1
Length = 627
Score = 267 bits (682), Expect = 9e-71, Method: Compositional matrix adjust.
Identities = 152/382 (39%), Positives = 217/382 (56%), Gaps = 43/382 (11%)
Query: 1 MENQIATTLRYSIQALGRGFDVTSDIRLLYCKGAPGS----RLVHIDEDHHAGDLVVSDG 56
M + ++++LG+GFD+T+D RL YCK GS RLV +D+ + + G
Sbjct: 1 MSRDGGDVIETAVKSLGKGFDLTADFRLKYCKDGDGSAGDDRLVVLDQTQNRELHIPGFG 60
Query: 57 VLVPNVSVDIECSKGNRSIERIPVCSFHEMAGYFNEKSGISGNIPLGSFNAMFNF-TGCW 115
V NVS DI C KG R+ R + F++M+ YFN++S ++G IP G+FNA F F +G W
Sbjct: 61 VF-QNVSADINCDKGERTRFRSDILDFNKMSEYFNQRSSVTGKIPSGNFNATFGFQSGSW 119
Query: 116 QADAAATKSLAMVGNFISLYKVKLAKLN-LVLREEIRRAVPYSWDPPLLASFIENYGTHI 174
DAA KSL + + ++L+ + + N L L + +R AVP SWDP LLA FIE YGTH+
Sbjct: 120 ATDAANVKSLGLDASVVTLFNLHIHNPNRLRLTDRVRNAVPSSWDPQLLARFIERYGTHV 179
Query: 175 VTSITIGGRDVVYIRQHQSSPLSMMDIENYVKDIGDERFMDSKSQSSAAPLK-------- 226
+T +++GG+DVV +RQ +SS L + +++ D+GD+ F S S+ K
Sbjct: 180 ITGVSVGGQDVVVVRQDKSSDLDNDLLRHHLYDLGDQLFTGSCLLSTRRLNKAYHHSHSQ 239
Query: 227 ---------YKDKD--------------VTVIFRRRGGDDLEQSHAKWAETVQLAPDVIN 263
+ DK +TVI +RGGD +SH++W TV PD IN
Sbjct: 240 PKFPEAFNVFDDKQTVAFNNFSINSQNGITVICAKRGGDGRAKSHSEWLITVPDKPDAIN 299
Query: 264 MTFTPIVSLLEGVPGIKHLARAIELYLEYKPPIEDLQYFLDYQIPRVWAPQHSNIQ-RKE 322
F PI SLL+ VPG L+ A+ LYL YKPP+ DLQYFLD+ PR WAP H+++
Sbjct: 300 FNFIPITSLLKDVPGSGLLSHAMSLYLRYKPPLMDLQYFLDFSGPRAWAPVHNDLPFGAA 359
Query: 323 PVCSS----LQFSLMGPKLYIS 340
P +S L + MGPKLY++
Sbjct: 360 PNMASAYPALHINFMGPKLYVN 381
>sp|Q811M5|CO6_RAT Complement component C6 OS=Rattus norvegicus GN=C6 PE=2 SV=1
Length = 934
Score = 42.0 bits (97), Expect = 0.007, Method: Compositional matrix adjust.
Identities = 46/226 (20%), Positives = 97/226 (42%), Gaps = 43/226 (19%)
Query: 104 SFNAMFNFTGCWQADAAATKSLAMVGNFISLYKVKLAKLNLVLREEIRRAV---PYSWDP 160
+F F +A S + I + + +L L + +A+ P ++
Sbjct: 292 NFQRNSGFKNAIEASHKKDSSFVRIHKVIKVLNFTMKTTDLQLSDVFLKALIHLPLEYNF 351
Query: 161 PLLASFIENYGTHIVTSITIGGR-DVVY--IRQH-QSSPLSMMDIENYVKDIGDERFM-- 214
L + +++GTH TS ++GG+ D++Y RQ Q+S L+ + N V+ +RF+
Sbjct: 352 ALYSRIFDDFGTHYFTSGSLGGKYDLLYQFSRQELQNSGLTEEETRNCVRYETKKRFLFF 411
Query: 215 -----DSKSQSSAAPLKYK-------DKDVTVIFRRRGGDDLEQSH-------------- 248
+ + ++ KYK +K ++++ +GG + +
Sbjct: 412 TKTYKEDRCTTNRLSEKYKGSFLQGSEKSISLV---QGGRSQQAAALAWEKGSSGPEANV 468
Query: 249 -AKWAETVQLAPDVINMTFTPIVSLLEGVPGI----KHLARAIELY 289
++W E+V+ P V++ PI+ L+ +P +L +A++ Y
Sbjct: 469 FSEWLESVKENPAVVDYELAPIIDLVRNIPCAVTKRNNLRKALQEY 514
>sp|Q29RU4|CO6_BOVIN Complement component C6 OS=Bos taurus GN=C6 PE=2 SV=1
Length = 932
Score = 40.0 bits (92), Expect = 0.027, Method: Compositional matrix adjust.
Identities = 44/222 (19%), Positives = 91/222 (40%), Gaps = 43/222 (19%)
Query: 116 QADAAATKSLAMVGNFISLYKVKLAKLNLVLREEIRRAV---PYSWDPPLLASFIENYGT 172
QA S + I + + +L L + +A+ P ++ L + +++GT
Sbjct: 304 QASQKKASSFIRIHKVIKVLNFTMKTKDLQLSDVFLKALNHLPLEYNSALYSRIFDDFGT 363
Query: 173 HIVTSITIGG-RDVVY---IRQHQSSPLSMMDIENYVKDIGDERFM-------DSKSQSS 221
H TS ++GG D++Y + ++S L+ + +N ++ +RF+ + + ++
Sbjct: 364 HYFTSGSLGGVYDLLYQFSKEELKNSGLTQEEAKNCIRIETKKRFLFVKKTKVEHRCTTN 423
Query: 222 AAPLKYK-------DKDVTVIFRRRGGDDL---------------EQSHAKWAETVQLAP 259
KY+ +K ++++ +GG E+ + W E+V+ P
Sbjct: 424 KLSEKYEGSFMQGSEKSISLV---QGGRSAYAAALAWEKGSPVPEERVFSDWLESVKENP 480
Query: 260 DVINMTFTPIVSLLEGVPGI----KHLARAIELYLEYKPPIE 297
VI+ PI L+ +P +L RA Y P +
Sbjct: 481 SVIDFALAPITDLVRNIPCAVTRRNNLRRAFREYAAKFDPCQ 522
>sp|Q9TUQ3|CO7_PIG Complement component C7 OS=Sus scrofa GN=C7 PE=1 SV=1
Length = 843
Score = 39.7 bits (91), Expect = 0.035, Method: Compositional matrix adjust.
Identities = 45/170 (26%), Positives = 68/170 (40%), Gaps = 35/170 (20%)
Query: 157 SWDPPLL-----ASFIENYGTHIVTSITIGG--RDVVYIRQHQ--SSPLSMMDIENYVKD 207
S+ PPL I+ YGTH + S ++GG + + Y+ + S L D +
Sbjct: 281 SYLPPLYDYSAYRRLIDQYGTHYLQSGSLGGEYKVLFYVDSEKVAESDLGSEDKKKCASS 340
Query: 208 IGDERFMDSKSQSSA--APLKYKDKDVTVIFRR----RGG----------------DDLE 245
F SK + A LK + + R RGG D +
Sbjct: 341 HISFLFKSSKHKCKAMEEALKSASGTQSNVLRGVPFVRGGRPGFVSGLSYLELDNPDGNK 400
Query: 246 QSHAKWAETVQLAPDVINMTFTPIVSLLEGVPGIK----HLARAIELYLE 291
Q ++ WA +V P VI TP+ L++ VP +L RA+E YL+
Sbjct: 401 QRYSSWAGSVTDLPQVIKQKLTPLYELVKEVPCASVKRLYLKRALEEYLD 450
>sp|Q29RQ1|CO7_BOVIN Complement component C7 OS=Bos taurus GN=C7 PE=2 SV=1
Length = 843
Score = 37.7 bits (86), Expect = 0.12, Method: Compositional matrix adjust.
Identities = 44/180 (24%), Positives = 68/180 (37%), Gaps = 47/180 (26%)
Query: 154 VPYSWDPPLLASFIENYGTHIVTSITIGGRDVVYI-----------------RQHQSSPL 196
+P +D I+ YGTH + S ++GG V R+ SS
Sbjct: 283 LPSLYDYSAYRRLIDQYGTHYLQSGSLGGEYKVIFHMDSEKVKKFDFHSEDKRKCASSHF 342
Query: 197 SMMDIENYVKDIGDERFMDSKSQSSA-----------------APLKYKDKDVTVIFRRR 239
+ + K E + S S++ A L Y D + +RR
Sbjct: 343 QFLFTSSKQKCTTMEEVLKSVSENEGNLLRGVPFVRGGHSGFLAGLSYLDLNNPAGNKRR 402
Query: 240 GGDDLEQSHAKWAETVQLAPDVINMTFTPIVSLLEGVPGIK----HLARAIELYL-EYKP 294
+++WA +V P+VI TP+ L++ VP +L RAIE YL E+ P
Sbjct: 403 --------YSQWAGSVPDLPEVIKQKLTPLYELVKEVPCASVKKLYLKRAIEEYLDEFDP 454
>sp|Q5RAD0|CO7_PONAB Complement component C7 OS=Pongo abelii GN=C7 PE=2 SV=1
Length = 843
Score = 37.7 bits (86), Expect = 0.14, Method: Compositional matrix adjust.
Identities = 40/172 (23%), Positives = 66/172 (38%), Gaps = 31/172 (18%)
Query: 154 VPYSWDPPLLASFIENYGTHIVTSITIGG--RDVVYIRQHQSSPLSMMDIENYVKDIGDE 211
+P +D I+ YGTH + S ++GG R + Y+ + +E
Sbjct: 283 LPSLYDYSAYRRLIDQYGTHYLQSGSLGGEYRVLFYVDSEKLKQNGFTSVEEKKCKSSGW 342
Query: 212 RFMDSKSQSSAAPLKYKDKDVTVI---------FRRRGGDDL---------------EQS 247
F+ S L+ K + F R GG ++
Sbjct: 343 HFVVKFSSHGCKELENALKAASGTQNNVLRGNPFIRGGGAGFISSLSYLELDNPAGNKRR 402
Query: 248 HAKWAETVQLAPDVINMTFTPIVSLLEGVPGIK----HLARAIELYL-EYKP 294
++ WA++V P VI TP+ L++ VP + +L RA+E YL E+ P
Sbjct: 403 YSAWAKSVTDLPKVIKQKLTPLYELVKEVPCVSVKKLYLKRALEEYLDEFDP 454
>sp|Q8K182|CO8A_MOUSE Complement component C8 alpha chain OS=Mus musculus GN=C8a PE=2
SV=1
Length = 587
Score = 37.4 bits (85), Expect = 0.16, Method: Compositional matrix adjust.
Identities = 20/58 (34%), Positives = 34/58 (58%), Gaps = 3/58 (5%)
Query: 128 VGNFISLYKVKLAKLNLVLREEIRRAV---PYSWDPPLLASFIENYGTHIVTSITIGG 182
V I + K+ + N+VL E + +++ P ++ + A FI +YGTH +TS T+GG
Sbjct: 292 VSTKIQTAQFKMRRNNIVLDEGMLQSLMELPEQFNYGMYAKFINDYGTHYITSGTMGG 349
>sp|O08852|PKD1_MOUSE Polycystin-1 OS=Mus musculus GN=Pkd1 PE=1 SV=2
Length = 4293
Score = 37.4 bits (85), Expect = 0.19, Method: Compositional matrix adjust.
Identities = 19/64 (29%), Positives = 31/64 (48%), Gaps = 1/64 (1%)
Query: 152 RAVPYSWDPPLLASFIENYGTHIVTSITIGGRDVVYIRQHQSSPLSMMDIENYVKDIGDE 211
R V YSW PP + ++GT T GG +V +I + S L ++ + N + D
Sbjct: 1393 RLVAYSW-PPFPYRYTWDFGTEDTTHTQTGGSEVKFIYREPGSYLVIVTVSNNISSTNDS 1451
Query: 212 RFMD 215
F++
Sbjct: 1452 AFVE 1455
>sp|P06683|CO9_MOUSE Complement component C9 OS=Mus musculus GN=C9 PE=1 SV=2
Length = 548
Score = 36.2 bits (82), Expect = 0.37, Method: Compositional matrix adjust.
Identities = 50/209 (23%), Positives = 86/209 (41%), Gaps = 50/209 (23%)
Query: 132 ISLYKVKLAKLNLVLREEIR---RAVPYSWDPPLLASFIENYGTHIVTSITIGGR-DVVY 187
+ L + + ++VLR +A+P S++ F+E YGTH TS ++GG+ ++VY
Sbjct: 299 VQLGRFVMRNRDVVLRSTFLDDVKALPTSYEKGEYFGFLETYGTHYSTSGSLGGQYEIVY 358
Query: 188 IRQHQSSPLSMMDIENYVKDIG---DERF---MDSKSQSSAAPLK-----YKDKDVTVIF 236
+ S +D+ + +G D R D K S A + D TV
Sbjct: 359 VLDKASMKEKGVDLNDVKHCLGFNMDLRIPLQDDLKDASVTASVNADGCIKTDNGKTVNI 418
Query: 237 RR-----------RGGDDLEQS------------------HAKWAETVQLAPDVINMTFT 267
R RGG EQ+ A WA ++ AP +I+ +
Sbjct: 419 TRDNIIDDVISFIRGG-TREQAILLKEKILRGDKTFDKTDFANWASSLANAPALISQRMS 477
Query: 268 PIVSLL-----EGVPGIKHLARAIELYLE 291
PI +L+ + ++L +A+E Y++
Sbjct: 478 PIYNLIPLKIKDAYIKKQNLEKAVEDYID 506
>sp|P10643|CO7_HUMAN Complement component C7 OS=Homo sapiens GN=C7 PE=1 SV=2
Length = 843
Score = 35.4 bits (80), Expect = 0.64, Method: Compositional matrix adjust.
Identities = 42/185 (22%), Positives = 71/185 (38%), Gaps = 51/185 (27%)
Query: 154 VPYSWDPPLLASFIENYGTHIVTSITIGGR-------DVVYIRQH--------------- 191
+P +D I+ YGTH + S ++GG D ++Q+
Sbjct: 283 LPSLYDYSAYRRLIDQYGTHYLQSGSLGGEYRVLFYVDSEKLKQNDFNSVEEKKCKSSGW 342
Query: 192 ----QSSPLSMMDIENYVKD--------IGDERFMDSKSQSSAAPLKYKDKDVTVIFRRR 239
+ S ++EN +K + E F+ + L Y + D +RR
Sbjct: 343 HFVVKFSSHGCKELENALKAASGTQNNVLRGEPFIRGGGAGFISGLSYLELDNPAGNKRR 402
Query: 240 GGDDLEQSHAKWAETVQLAPDVINMTFTPIVSLLEGVPGIKHLARAIELYLEYKPPIEDL 299
++ WAE+V P VI TP+ L++ VP A +LYL++ L
Sbjct: 403 --------YSAWAESVTNLPQVIKQKLTPLYELVKEVP----CASVKKLYLKWA-----L 445
Query: 300 QYFLD 304
+ +LD
Sbjct: 446 EEYLD 450
>sp|Q6ZQ93|UBP34_MOUSE Ubiquitin carboxyl-terminal hydrolase 34 OS=Mus musculus GN=Usp34
PE=1 SV=3
Length = 3582
Score = 34.7 bits (78), Expect = 1.0, Method: Compositional matrix adjust.
Identities = 19/59 (32%), Positives = 24/59 (40%)
Query: 115 WQADAAATKSLAMVGNFISLYKVKLAKLNLVLREEIRRAVPYSWDPPLLASFIENYGTH 173
W AA L+ +F SL + N EE+RRA P W P +N TH
Sbjct: 472 WNNALAAKAQLSKQSSFASLLNTNMPIGNKKEEEELRRAAPSPWSPAASPQSSDNSDTH 530
>sp|P48770|CO9_HORSE Complement component C9 OS=Equus caballus GN=C9 PE=2 SV=1
Length = 547
Score = 34.7 bits (78), Expect = 1.1, Method: Compositional matrix adjust.
Identities = 38/179 (21%), Positives = 79/179 (44%), Gaps = 40/179 (22%)
Query: 152 RAVPYSWDPPLLASFIENYGTHIVTSITIGG-RDVVYIRQHQSSPLSMMDIENYVKDIG- 209
+A+P +++ +F+E YGTH +S ++GG +++Y+ S +++ + + +G
Sbjct: 324 KALPTAYEKGEYIAFLETYGTHYSSSGSLGGLYELIYVLDKASMDQKGVELRDIQRCLGF 383
Query: 210 ------DERFMDSKSQSSAAPLKYKDKDVT----------VIFRRRGGD-----DLEQSH 248
+++ + LK +K++ VI RGG +L++
Sbjct: 384 NLDLSLKDKYEVTAKIDKNDCLKRNEKEIVNIMDGSLIDDVISLIRGGTRKYAFELKEKL 443
Query: 249 AK------------WAETVQLAPDVINMTFTPIVSLL-----EGVPGIKHLARAIELYL 290
K WA ++ AP +I+ +PI +L+ + ++L RAIE Y+
Sbjct: 444 LKGAKTVNVTDFVNWASSLNDAPVLISQRLSPIYNLIPVKMKDAHQKKQNLERAIEDYI 502
>sp|P48747|CO9_RABIT Complement component C9 OS=Oryctolagus cuniculus GN=C9 PE=1 SV=1
Length = 557
Score = 33.9 bits (76), Expect = 1.9, Method: Compositional matrix adjust.
Identities = 15/59 (25%), Positives = 35/59 (59%), Gaps = 1/59 (1%)
Query: 152 RAVPYSWDPPLLASFIENYGTHIVTSITIGGR-DVVYIRQHQSSPLSMMDIENYVKDIG 209
+++P +++ +F+E YGTH +S ++GGR +++Y+ S +++ + K +G
Sbjct: 329 KSLPTTYEKGEYFAFLETYGTHYSSSGSLGGRYELIYVLDKASMKEKGIELNDIKKCLG 387
>sp|Q70CQ2|UBP34_HUMAN Ubiquitin carboxyl-terminal hydrolase 34 OS=Homo sapiens GN=USP34
PE=1 SV=2
Length = 3546
Score = 33.9 bits (76), Expect = 2.1, Method: Compositional matrix adjust.
Identities = 21/71 (29%), Positives = 27/71 (38%), Gaps = 5/71 (7%)
Query: 115 WQADAAATKSLAMVGNFISLYKVKLAKLNLVLREEIRRAVPYSWDPPLLASFIENYGTHI 174
W AA L+ +F SL + N EE+RR P W P +N TH
Sbjct: 472 WNNALAAKAQLSKQSSFASLLNTNIPIGNKKEEEELRRTAPSPWSPAASPQSSDNSDTH- 530
Query: 175 VTSITIGGRDV 185
GG D+
Sbjct: 531 ----QSGGSDI 537
>sp|P98136|CO8A_RABIT Complement component C8 alpha chain OS=Oryctolagus cuniculus GN=C8A
PE=1 SV=1
Length = 585
Score = 33.5 bits (75), Expect = 2.4, Method: Compositional matrix adjust.
Identities = 16/48 (33%), Positives = 31/48 (64%), Gaps = 3/48 (6%)
Query: 138 KLAKLNLVLREEIRRAV---PYSWDPPLLASFIENYGTHIVTSITIGG 182
K+ + ++VL E + +A+ P ++ + + FI +YGTH +TS ++GG
Sbjct: 302 KMRRDDIVLDEGMLQALVELPEQYNYGMYSKFINDYGTHYITSGSMGG 349
>sp|Q99396|CY42_TRYBB Receptor-type adenylate cyclase GRESAG 4.2 (Fragment)
OS=Trypanosoma brucei brucei GN=GRESAG 4.2 PE=2 SV=1
Length = 572
Score = 32.3 bits (72), Expect = 5.2, Method: Compositional matrix adjust.
Identities = 21/61 (34%), Positives = 32/61 (52%), Gaps = 6/61 (9%)
Query: 214 MDSKSQSSAAPLKYKDKDVTVIFRRRGGDDLEQSHAKWAETVQLAPDVINMTFTPIVSLL 273
M +K + AP + D VT+IF D+E S A+WA +L PD + + + SL+
Sbjct: 251 MRNKRDNDNAPKELADP-VTLIF-----TDIESSTAQWATQPELMPDAVATHHSMVRSLI 304
Query: 274 E 274
E
Sbjct: 305 E 305
Database: swissprot
Posted date: Mar 23, 2013 2:32 AM
Number of letters in database: 191,569,459
Number of sequences in database: 539,616
Lambda K H
0.322 0.138 0.416
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 133,173,350
Number of Sequences: 539616
Number of extensions: 5606458
Number of successful extensions: 11787
Number of sequences better than 100.0: 21
Number of HSP's better than 100.0 without gapping: 7
Number of HSP's successfully gapped in prelim test: 14
Number of HSP's that attempted gapping in prelim test: 11757
Number of HSP's gapped (non-prelim): 32
length of query: 355
length of database: 191,569,459
effective HSP length: 118
effective length of query: 237
effective length of database: 127,894,771
effective search space: 30311060727
effective search space used: 30311060727
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 62 (28.5 bits)