Query 018486
Match_columns 355
No_of_seqs 250 out of 544
Neff 6.7
Searched_HMMs 29240
Date Mon Mar 25 16:00:30 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/018486.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/018486hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 3nsj_A Perforin-1; pore formin 100.0 6.6E-44 2.3E-48 366.7 18.9 301 10-328 17-379 (540)
2 3ojy_A Complement component C8 100.0 2.9E-42 9.9E-47 355.4 19.7 262 51-327 176-491 (554)
3 3ojy_B Complement component C8 100.0 3.4E-42 1.2E-46 354.2 18.8 294 12-337 117-480 (537)
4 3t5o_A Complement component C6 100.0 1.6E-40 5.5E-45 360.6 18.9 297 10-327 166-524 (913)
5 2rd7_A Complement component C8 100.0 1.7E-39 5.9E-44 320.1 21.1 239 51-291 81-367 (367)
6 2qp2_A Unknown protein; toxin, 100.0 6.4E-40 2.2E-44 334.6 5.3 298 7-341 36-388 (511)
7 3kk7_A Putative cell invasion 99.6 4.7E-18 1.6E-22 169.1 -3.0 265 8-292 48-369 (541)
8 4fxv_A ELAV-like protein 1; RN 31.3 31 0.0011 26.0 2.9 23 150-172 23-45 (99)
9 4f25_A Polyadenylate-binding p 30.7 32 0.0011 26.5 2.9 23 150-172 9-31 (115)
10 1rju_V Metallothionein; Cu(I)- 27.9 29 0.001 21.3 1.7 19 309-327 5-24 (36)
11 2dnp_A RNA-binding protein 14; 27.0 36 0.0012 24.7 2.5 51 150-208 13-63 (90)
12 3bs9_A Nucleolysin TIA-1 isofo 26.9 44 0.0015 23.8 2.9 28 151-180 11-38 (87)
13 2cqd_A RNA-binding region cont 26.8 39 0.0013 25.8 2.8 30 149-180 20-49 (116)
14 2dnh_A Bruno-like 5, RNA bindi 26.6 39 0.0013 25.1 2.7 23 150-172 19-41 (105)
15 2dnq_A RNA-binding protein 4B; 25.1 47 0.0016 24.0 2.8 24 150-173 12-35 (90)
16 2ytc_A PRE-mRNA-splicing facto 24.8 47 0.0016 23.5 2.8 29 150-180 16-44 (85)
17 2dnz_A Probable RNA-binding pr 23.7 49 0.0017 24.0 2.7 23 150-172 9-31 (95)
18 1sjq_A Polypyrimidine tract-bi 23.3 46 0.0016 26.0 2.5 29 150-180 20-48 (105)
19 2cqg_A TDP-43, TAR DNA-binding 23.3 53 0.0018 24.3 2.9 25 150-174 19-43 (103)
20 3ucg_A Polyadenylate-binding p 23.2 57 0.0019 23.3 2.9 21 152-172 12-32 (89)
21 2e5h_A Zinc finger CCHC-type a 23.2 46 0.0016 24.1 2.4 29 150-180 20-48 (94)
22 2do4_A Squamous cell carcinoma 23.1 51 0.0017 24.3 2.7 29 150-180 21-49 (100)
23 2d9p_A Polyadenylate-binding p 23.0 41 0.0014 25.0 2.1 52 150-208 19-75 (103)
24 2dgo_A Cytotoxic granule-assoc 22.8 55 0.0019 24.8 2.9 52 150-208 19-77 (115)
25 3s7r_A Heterogeneous nuclear r 22.1 55 0.0019 23.3 2.7 24 150-173 15-38 (87)
26 2cq3_A RNA-binding protein 9; 21.8 59 0.002 24.1 2.9 24 150-173 19-42 (103)
27 1pfo_A Perfringolysin O, PFO; 21.8 69 0.0024 32.2 4.0 128 128-270 224-368 (500)
28 1wi8_A EIF-4B, eukaryotic tran 21.7 43 0.0015 25.0 2.1 28 150-180 19-46 (104)
29 2cph_A RNA binding motif prote 21.5 52 0.0018 24.5 2.5 29 150-180 19-47 (107)
30 2cpf_A RNA binding motif prote 21.3 62 0.0021 23.6 2.9 23 150-172 9-31 (98)
31 1why_A Hypothetical protein ri 21.2 60 0.0021 23.8 2.8 23 150-172 21-43 (97)
32 2dh8_A DAZ-associated protein 21.1 68 0.0023 23.8 3.1 26 149-174 19-44 (105)
33 3nmr_A Cugbp ELAV-like family 20.8 59 0.002 26.0 2.9 28 151-180 8-35 (175)
34 2dnm_A SRP46 splicing factor; 20.6 53 0.0018 24.3 2.4 29 150-180 17-45 (103)
35 1wf0_A TDP-43, TAR DNA-binding 20.6 28 0.00097 25.2 0.7 29 150-180 9-37 (88)
36 3d2w_A TAR DNA-binding protein 20.5 55 0.0019 24.0 2.4 29 150-180 15-43 (89)
37 2dgu_A Heterogeneous nuclear r 20.2 57 0.0019 24.3 2.5 50 150-208 15-65 (103)
38 2khc_A Testis-specific RNP-typ 20.2 54 0.0018 25.0 2.4 29 150-180 44-72 (118)
39 2ywk_A Putative RNA-binding pr 20.2 69 0.0024 23.2 2.9 22 151-172 21-42 (95)
40 2cqc_A Arginine/serine-rich sp 20.2 67 0.0023 23.2 2.8 28 151-180 20-47 (95)
No 1
>3nsj_A Perforin-1; pore forming protein, immune system; HET: NAG; 2.75A {Mus musculus}
Probab=100.00 E-value=6.6e-44 Score=366.67 Aligned_cols=301 Identities=17% Similarity=0.229 Sum_probs=224.7
Q ss_pred HHhhccccceeeecC-chhh------ccCCCCCCCceEEec-CCCCccceeecCCeeeCCCCcc-eeecCcceeEEeecc
Q 018486 10 RYSIQALGRGFDVTS-DIRL------LYCKGAPGSRLVHID-EDHHAGDLVVSDGVLVPNVSVD-IECSKGNRSIERIPV 80 (355)
Q Consensus 10 ~~~~~~lG~GyD~t~-d~r~------~~~k~~~~srli~~~-~~~~~~~l~~p~g~~v~~v~~~-i~~~k~~~~~~~sdv 80 (355)
.++++.+|.||||+. +.|- .|..+ +++.+-... ......-.-+|.++. +...+ ++|+..++.++|++.
T Consensus 17 ~Pg~~l~G~G~nilt~e~~g~~VlD~~~~~~-~~G~C~~c~~~~~~~~~~RlP~nv~--~~~~~~~~~~~~~s~e~y~s~ 93 (540)
T 3nsj_A 17 VPGVWMAGEGMDVTTLRRSGSFPVNTQRFLR-PDRTCTLCKNSLMRDATQRLPVAIT--HWRPHSSHCQRNVAAAKVHST 93 (540)
T ss_dssp CTTGGGTTCEEETTTTEECSCCSBCCCCCSC-TTSCEEEEEETTTTTEEEEECTTEE--EEEECCSCCCCCCEEEEECSH
T ss_pred CCChHHhcCCEEEecCcccCCEeEechhccC-CCCeeeEecccccCCceeeccceee--eEEEEEeeeeeeechhhcccH
Confidence 468999999999765 4432 34432 123432221 111012257888753 23445 899999999999998
Q ss_pred ccH-HHhhhh--ccceeeeeec-cCCceEEEEEeecchhhHhHHHHhhcceec-------EEEEEEEEEEecCCCCcchH
Q 018486 81 CSF-HEMAGY--FNEKSGISGN-IPLGSFNAMFNFTGCWQADAAATKSLAMVG-------NFISLYKVKLAKLNLVLREE 149 (355)
Q Consensus 81 ~~f-~~ms~~--fn~~~~L~~~-ip~g~f~~~f~~s~s~~~~~a~~ks~~~d~-------~~i~l~~~~l~~~~l~L~~~ 149 (355)
.++ ++++.. .||+++|+++ .|...+++++++++|...+++.+|+. .++ ..+++|+|+|+. +++|+++
T Consensus 94 ~~~~~~~~~~~~~~~~~~l~i~~~~~~~~~~~~~~s~s~~~~~a~~~s~-~~~~~F~~~~~~~~~~~~~~~~-~~~L~~~ 171 (540)
T 3nsj_A 94 EGVAREAAANINNDWRVGLDVNPRPEANMRASVAGSHSKVANFAAEKTY-QDQYNFNSDTVECRMYSFRLVQ-KPPLHLD 171 (540)
T ss_dssp HHHHHHHHTTBCSCTTTTSCCC-CCSTTTTCBCTTTTSHHHHHHHHHHH-HSCEEEEEEEEEEEEEEEEECS-SCCBCHH
T ss_pred HHHHHHHhhhcccccceeeecccccccceeEEeecccchhhHHHHHhhh-ccceEEEEEEEEEEEEEEEeCC-CCCCCHH
Confidence 885 444443 4788888765 34445667888899988889887765 333 344589999985 6899999
Q ss_pred HHh---hCCCCCCh---HHHHHHHhccccEEEEEEEEccE-EE-EEEeec--ccCCCCHHHHHHHHHhhcccccc-cccc
Q 018486 150 IRR---AVPYSWDP---PLLASFIENYGTHIVTSITIGGR-DV-VYIRQH--QSSPLSMMDIENYVKDIGDERFM-DSKS 218 (355)
Q Consensus 150 F~~---~LP~~yd~---~~y~~fIe~YGTHyit~v~lGGk-~v-~~v~~~--~ss~ls~~evk~cl~~~~~~~f~-~~~~ 218 (355)
|++ +||..|++ ++|++||++||||||++++|||+ ++ ++++++ +++++|.+|+++||+.++++++. ..+.
T Consensus 172 F~~~l~~LP~~~~~~~~~~Y~~fi~~yGTHyi~s~~lGG~~~~i~~~~~~~~~~~~~t~~ev~~Cl~~e~~~~~~~~~~~ 251 (540)
T 3nsj_A 172 FKKALRALPRNFNSSTEHAYHELISSYGTHFITAVDLGGRISVLTALRTCQLTLNGLTADEVGDCLNVEAQVSIGAQASV 251 (540)
T ss_dssp HHHHHHTSCSSCCSSTHHHHHHHHHHHCSEEEEEEEEEEEEEEEEEEEHHHHHHTTCCHHHHHHHHHHHHHHHHTSSCSC
T ss_pred HHHHHHhcccccCcccHHHHHHHHHhcCcEEEEeeeccceEEEEEEEehHhHhhcCCCHHHHHHHHhhcccEEEEEeEee
Confidence 999 49999999 99999999999999999999999 55 566664 56799999999999988877663 2222
Q ss_pred ccccCcc-----------cccCCceEEEEEeecCCcc------------hhhHHHHHHhhccCCceeeeeeeehhhhccC
Q 018486 219 QSSAAPL-----------KYKDKDVTVIFRRRGGDDL------------EQSHAKWAETVQLAPDVINMTFTPIVSLLEG 275 (355)
Q Consensus 219 ~s~~~~~-----------~~~~~~~~vi~~~~GG~~l------------~~~~~~W~~SV~~~P~vI~~~l~PI~eLl~~ 275 (355)
+.....| .|.....+++..++||.+. .+.|.+|++||+++|+||+++|.|||+||+.
T Consensus 252 ~~~~~~C~~~~~~~~~~~~~~~~~~~~~~~V~GG~~~~~~~L~~~~~~~p~~~~~W~~Sv~~~P~~I~~~l~PI~~Lv~~ 331 (540)
T 3nsj_A 252 SSEYKACEEKKKQHKMATSFHQTYRERHVEVLGGPLDSTHDLLFGNQATPEQFSTWTASLPSNPGLVDYSLEPLHTLLEE 331 (540)
T ss_dssp SHHHHHHHHHHHHTTCSSCHHHHCCCEEEEEESSCGGGCCCSSSCSSCCHHHHHHHHHHTTTSCEEEEEEEEEGGGGSCT
T ss_pred cccccccccccccccccCCcccccceEEEEEeCCCccchhhhhcccCCCHHHHHHHHHHHhhCCceEEEEEEEHHHhcCC
Confidence 2211222 1111123566788999752 3579999999999999999999999999994
Q ss_pred -chhHHHHHHHHHHHHHhCCChhHHhhhhcccCCc-ccc-cCCCCC-----ccCCCCCCce
Q 018486 276 -VPGIKHLARAIELYLEYKPPIEDLQYFLDYQIPR-VWA-PQHSNI-----QRKEPVCSSL 328 (355)
Q Consensus 276 -~p~k~~Lk~AI~~Yl~~kp~ieel~~fle~~~p~-~wa-p~~n~~-----~~~~~~~~~l 328 (355)
.++|+||++||++||. ++.|| +|+ ||+||+ ..|.|+||.=
T Consensus 332 ~~~kr~nLk~Ai~~Yl~-------------e~~~c~~C~~PC~nn~~~l~g~~C~C~C~~~ 379 (540)
T 3nsj_A 332 QNPKREALRQAISHYIM-------------SRARWQNCSRPCRSGQHKSSHDSCQCECQDS 379 (540)
T ss_dssp TCTHHHHHHHHHHHHHH-------------HTCBCCCTTSCCBTTEEECSSCTTCEEESCT
T ss_pred cHHHHHHHHHHHHHHHH-------------hcCchhhhcccccCCCccCCCCceEeeCCCC
Confidence 7899999999999999 99999 997 999999 7788888764
No 2
>3ojy_A Complement component C8 alpha chain; macpf, lipocalin, immune system; HET: TPO BMA; 2.51A {Homo sapiens}
Probab=100.00 E-value=2.9e-42 Score=355.44 Aligned_cols=262 Identities=17% Similarity=0.184 Sum_probs=179.6
Q ss_pred eeecCCeeeCCCCcceeecCcceeEEeeccccH-HHhhh--hccceeeeeeccCCceEEEEEeecchhhHhHHHH--hhc
Q 018486 51 LVVSDGVLVPNVSVDIECSKGNRSIERIPVCSF-HEMAG--YFNEKSGISGNIPLGSFNAMFNFTGCWQADAAAT--KSL 125 (355)
Q Consensus 51 l~~p~g~~v~~v~~~i~~~k~~~~~~~sdv~~f-~~ms~--~fn~~~~L~~~ip~g~f~~~f~~s~s~~~~~a~~--ks~ 125 (355)
+-+|..+. +....++|+..++.++|++..++ +++++ ..+|+++|+++++...+.++++++++....+++. ++.
T Consensus 176 ~RlP~nv~--~~~~~~~~~~~~s~e~y~s~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~s~s~~~~~~~~~~~~~ 253 (554)
T 3ojy_A 176 FRKPYNFL--KYHFEALADTGISSEFYDNANDLLSKVKKDKSDSFGVTIGIGPAGSPLLVGVGVSHSQDTSFLNELNKYN 253 (554)
T ss_dssp EEECTTEE--EEEECCCCCCCCEEEEESSHHHHHHHHC--------------------------------CTTGGGTTCC
T ss_pred EEccceee--EEeEEEEEeeecchhhhhcHHHHHHHHHhhhccccceeeecccccceeEEEeeccccchhHHHHHHHhhc
Confidence 57888753 33456899999999999998886 34433 3467888888755556778888888877777554 222
Q ss_pred ----ce--ecEEEEEEEEEEecCCCCcchHHHhh---CCCCCChHHHHHHHhccccEEEEEEEEccE-EEEEEee-c--c
Q 018486 126 ----AM--VGNFISLYKVKLAKLNLVLREEIRRA---VPYSWDPPLLASFIENYGTHIVTSITIGGR-DVVYIRQ-H--Q 192 (355)
Q Consensus 126 ----~~--d~~~i~l~~~~l~~~~l~L~~~F~~~---LP~~yd~~~y~~fIe~YGTHyit~v~lGGk-~v~~v~~-~--~ 192 (355)
.| ....+++|+|+|+.++++|+++|+++ ||..|++++|++||++||||||++++|||+ +++++.. + +
T Consensus 254 ~k~~~F~~~~~~~~~~~f~l~~~~l~L~~~F~~~l~~LP~~y~~~~y~~fi~~yGTHyi~s~~lGG~~~~i~~l~~~~~~ 333 (554)
T 3ojy_A 254 EKKFIFTRIFTKVQTAHFKMRKDDIMLDEGMLQSLMELPDQYNYGMYAKFINDYGTHYITSGSMGGIYEYILVIDKAKME 333 (554)
T ss_dssp STTEEEEEEEEEEEEEEEEECSSSBCBCHHHHHHHHTCCSSCCHHHHHHHHHHHCSEEEEEEEEEEEEEEEEEEEHHHHH
T ss_pred ccceEEEEEEEEEEEEEEEEeCCCCCCCHHHHHHHHhCCccCCHHHHHHHHHhcCcEEEEeeeeCcEEEEEEEEehhhhh
Confidence 12 34456699999998899999999995 899999999999999999999999999999 7766543 3 6
Q ss_pred cCCCCHHHHHHHHHhhcccccc---ccccccccCcc-----------cccCCceEEEEEeecCCcc----------hhhH
Q 018486 193 SSPLSMMDIENYVKDIGDERFM---DSKSQSSAAPL-----------KYKDKDVTVIFRRRGGDDL----------EQSH 248 (355)
Q Consensus 193 ss~ls~~evk~cl~~~~~~~f~---~~~~~s~~~~~-----------~~~~~~~~vi~~~~GG~~l----------~~~~ 248 (355)
.+++|.+|+++||+.+++++|. .+++......| .++....+++..++||++. .+.|
T Consensus 334 ~sglt~~dvk~Cl~~e~~~~~~~~~~~~~~~~~~~C~~~~~~~~~~~~~~~~~~~~~~~V~GG~~~~~~~L~~~~~~~~~ 413 (554)
T 3ojy_A 334 SLGITSRDITTCFGGSLGIQYEDKINVGGGLSGDHCKKFGGGKTERARKAMAVEDIISRVRGGSSGWSGGLAQNRSTITY 413 (554)
T ss_dssp HTTCCHHHHHHHHHHTTTCCC-------------CCTTTTTTCSHHHHHHTTEEEEEECCBSCC----------CCCCCH
T ss_pred hcCCCHHHHHHHHhhcccEEEeeeeeeecccccccccccccccccccccccccceEEEEEECCCccccchhhcccCHHHH
Confidence 7899999999999999988772 22222211122 2333345788899999853 3569
Q ss_pred HHHHHhhccCCceeeeeeeehhhhcc--Cc----hhHHHHHHHHHHHHHhCCChhHHhhhhcccCCcccccCCCCC----
Q 018486 249 AKWAETVQLAPDVINMTFTPIVSLLE--GV----PGIKHLARAIELYLEYKPPIEDLQYFLDYQIPRVWAPQHSNI---- 318 (355)
Q Consensus 249 ~~W~~SV~~~P~vI~~~l~PI~eLl~--~~----p~k~~Lk~AI~~Yl~~kp~ieel~~fle~~~p~~wap~~n~~---- 318 (355)
.+|++||+++|+||+++|.|||+||+ ++ ++|+||++||++||. ++.||+|+||+|++
T Consensus 414 ~~W~~Sv~~~P~vI~~~l~PI~~Lv~~~~~p~~~~kr~nL~~Ai~~Yl~-------------e~~~c~c~pC~~~g~~~~ 480 (554)
T 3ojy_A 414 RSWGRSLKYNPVVIDFEMQPIHEVLRHTSLGPLEAKRQNLRRALDQYLM-------------EFNACRCGPCFNNGVPIL 480 (554)
T ss_dssp HHHHHHGGGSCEEEEEEEEEGGGGGGGBTTCCCHHHHHHHHHHHHHHHH-------------HTCGGGSCCCTTTCCEEE
T ss_pred HHHHHHHhcCCceEEEEeEeHHHhcCcccCCccHHHHHHHHHHHHHHHh-------------hcccccccccCCCCEEcC
Confidence 99999999999999999999999998 43 568999999999999 99999999999998
Q ss_pred --ccCCCCCCc
Q 018486 319 --QRKEPVCSS 327 (355)
Q Consensus 319 --~~~~~~~~~ 327 (355)
..|.+.|+.
T Consensus 481 ~gt~C~c~C~~ 491 (554)
T 3ojy_A 481 EGTSCRCQCRL 491 (554)
T ss_dssp ETTEEEECCCS
T ss_pred CCCcccccCCC
Confidence 345555654
No 3
>3ojy_B Complement component C8 beta chain; macpf, lipocalin, immune system; HET: TPO BMA; 2.51A {Homo sapiens}
Probab=100.00 E-value=3.4e-42 Score=354.20 Aligned_cols=294 Identities=16% Similarity=0.175 Sum_probs=211.8
Q ss_pred hhccccceeeecC--------chhh--ccCCCCCCCceEEecCCCCccceeecCCeeeCCCCcceeecCcceeEEeeccc
Q 018486 12 SIQALGRGFDVTS--------DIRL--LYCKGAPGSRLVHIDEDHHAGDLVVSDGVLVPNVSVDIECSKGNRSIERIPVC 81 (355)
Q Consensus 12 ~~~~lG~GyD~t~--------d~r~--~~~k~~~~srli~~~~~~~~~~l~~p~g~~v~~v~~~i~~~k~~~~~~~sdv~ 81 (355)
+++.+|.||||+. |.+. ..|+. +... + .+ +-+|.++. .....++|+..++.++|++..
T Consensus 117 ~~~l~G~G~dilt~~~~g~vlD~~~~~G~C~~------~~~~--~-~~-yRlP~nv~--~~~~~~~~~~~~sse~y~S~~ 184 (537)
T 3ojy_B 117 GIGSLASGINLFTNSFEGPVLDHRYYAGGCSP------HYIL--N-TR-FRKPYNVE--SYTPQTQGKYEFILKEYESYS 184 (537)
T ss_dssp TGGGGGEEECTTTCCEEEECBCTTCCCSCCEE------EEET--T-EE-EEECTTEE--EEEECCCCCCCEEEEEESSHH
T ss_pred cceecceeEEEecCccccceecccccCCccce------eecC--C-cc-EECcccce--eEeeeeeEeeecchhhhhcHH
Confidence 6788999999775 3322 33441 2221 1 22 77898853 224458999999999999988
Q ss_pred cHH-----HhhhhccceeeeeeccCCceEEEEEeecchhhHhHHH--Hhhccee-------cEEEEEEEEEEecCCCCcc
Q 018486 82 SFH-----EMAGYFNEKSGISGNIPLGSFNAMFNFTGCWQADAAA--TKSLAMV-------GNFISLYKVKLAKLNLVLR 147 (355)
Q Consensus 82 ~f~-----~ms~~fn~~~~L~~~ip~g~f~~~f~~s~s~~~~~a~--~ks~~~d-------~~~i~l~~~~l~~~~l~L~ 147 (355)
++. +.+.+++|+++|+. |. .+++.++++++..++++. +|+. .+ +..+++|+|+|+..+++|+
T Consensus 185 ~~~~~~~~~~s~~~~~~~gl~i--~~-~~~~~~~~s~s~~~~~~~~~~~~~-~~~~~f~~~~~~~~~~~~~l~~~~~~L~ 260 (537)
T 3ojy_B 185 DFERNVTEKMASKSGFSFGFKI--PG-IFELGISSQSDRGKHYIRRTKRFS-HTKSVFLHARSDLEVAHYKLKPRSLMLH 260 (537)
T ss_dssp HHTTTSCC-----CCCBTTTBC--CS-CEECCCTTTSSSSHHHHHHHHTTC-SCCEEEEEEEECEEEEEEEECSSSCCBC
T ss_pred HHHHHhhhhccccccceeeeec--cc-ceeEeEeecccchHHHHHHHHHhh-ccceEEEEEEEEEEEEEEEEeCCCCCCC
Confidence 863 33345566666654 43 466667777887777765 3333 23 3345599999988889999
Q ss_pred hHHHhh---CCCCCChHHHHHHHhccccEEEEEEEEccE-EEEEE-eec--ccCCCCHHHHHHHHHhhcccccc----cc
Q 018486 148 EEIRRA---VPYSWDPPLLASFIENYGTHIVTSITIGGR-DVVYI-RQH--QSSPLSMMDIENYVKDIGDERFM----DS 216 (355)
Q Consensus 148 ~~F~~~---LP~~yd~~~y~~fIe~YGTHyit~v~lGGk-~v~~v-~~~--~ss~ls~~evk~cl~~~~~~~f~----~~ 216 (355)
++|+++ ||..|++++|++||++||||||++++|||+ +++++ +++ +.+++|.+|+++||+.++++++. .+
T Consensus 261 ~~F~~~l~~LP~~y~~~~y~~fi~~yGTH~i~s~~lGG~~~~i~~~~~~~~~~s~~t~~evk~Cl~~~~~~~~~i~~~~~ 340 (537)
T 3ojy_B 261 YEFLQRVKRLPLEYSYGEYRDLFRDFGTHYITEAVLGGIYEYTLVMNKEAMERGDYTLNNVHACAKNDFKIGGAIEEVYV 340 (537)
T ss_dssp HHHHHHHTTCCSSCCHHHHHHHHHHHCSEEEEEEEEEECCEEEEEEEHHHHTTTTCCHHHHHHHTTTC------------
T ss_pred HHHHHHHHhcccccCHHHHHHHHHhcCcEEEEeEeeccEEEEEEEEehHhHhhcCCCHHHHHHHHhcccceeEEeeeeee
Confidence 999985 899999999999999999999999999999 77664 433 67799999999999988875552 12
Q ss_pred ccccccCcc-----------cccCCceEEEEEeecCCcc------------hhhHHHHHHhhccCCceeeeeeeehhhhc
Q 018486 217 KSQSSAAPL-----------KYKDKDVTVIFRRRGGDDL------------EQSHAKWAETVQLAPDVINMTFTPIVSLL 273 (355)
Q Consensus 217 ~~~s~~~~~-----------~~~~~~~~vi~~~~GG~~l------------~~~~~~W~~SV~~~P~vI~~~l~PI~eLl 273 (355)
+++.....| .++....+++..++||++. ...|.+|++||+++|+||+++|.|||+||
T Consensus 341 ~~~~~~~~C~~~~~~~~~~~~~~~~~~~~~~~V~GG~~~~~~~L~~~~~~~~~~~~~W~~Sv~~~P~vI~~~l~PI~eLv 420 (537)
T 3ojy_B 341 SLGVSVGKCRGILNEIKDRNKRDTMVEDLVVLVRGGASEHITTLAYQELPTADLMQEWGDAVQYNPAIIKVKVEPLYELV 420 (537)
T ss_dssp ----CCSCCTTTTTHHHHTTTSSCSEEEEEEECCSCCSTTCCCCCTSSSCCCSCHHHHHHHHHTSCEEEEEEEEEGGGGC
T ss_pred eccccccccccccccccccccccccceeEEEEEeCCCcccchhhhcccCCCHHHHHHHHHHhhcCCceEEEEeEeHHHhc
Confidence 222111122 2233345888899999852 35799999999999999999999999999
Q ss_pred c--Cch----hHHHHHHHHHHHHHhCCChhHHhhhhcccCCcccccCCCCC------ccCCCCCCceeEEeeccee
Q 018486 274 E--GVP----GIKHLARAIELYLEYKPPIEDLQYFLDYQIPRVWAPQHSNI------QRKEPVCSSLQFSLMGPKL 337 (355)
Q Consensus 274 ~--~~p----~k~~Lk~AI~~Yl~~kp~ieel~~fle~~~p~~wap~~n~~------~~~~~~~~~l~f~~~g~~l 337 (355)
+ ++| +|+||++||++||. ++.||+|+||+|++ ..|.+.|++- +.|.-.
T Consensus 421 ~~~~ip~~~~kr~nL~~Ai~~Yl~-------------e~~~c~C~pC~~~~~~~~~gt~C~c~C~~g---~~G~~c 480 (537)
T 3ojy_B 421 TATDFAYSSTVRQNMKQALEEFQK-------------EVSSCHCAPCQGNGVPVLKGSRCDCICPVG---SQGLAC 480 (537)
T ss_dssp CTTTCTTHHHHHHHHHHHHHHHHH-------------HTCGGGSCCCSTTCEEEEETTEEEEECCTT---EETGGG
T ss_pred CcccCCchHHHHHHHHHHHHHHHH-------------HhCcccCCCCCcCCEEecCCCceeccCCCC---cccccc
Confidence 5 344 57999999999999 99999999999998 5677778776 346533
No 4
>3t5o_A Complement component C6; macpf, MAC, membrane attack complex, innate IMMU system, blood, membrane, cytolysin, immune SYST; HET: NAG FUL FUC BGC MAN; 2.87A {Homo sapiens} PDB: 4a5w_B* 4e0s_B*
Probab=100.00 E-value=1.6e-40 Score=360.64 Aligned_cols=297 Identities=21% Similarity=0.269 Sum_probs=207.6
Q ss_pred HHhhccccceeeecCc-hh-----hccCCCCCCCceEEecCCCCccceeecCCeeeCCCCcceeecC-cceeEEeecccc
Q 018486 10 RYSIQALGRGFDVTSD-IR-----LLYCKGAPGSRLVHIDEDHHAGDLVVSDGVLVPNVSVDIECSK-GNRSIERIPVCS 82 (355)
Q Consensus 10 ~~~~~~lG~GyD~t~d-~r-----~~~~k~~~~srli~~~~~~~~~~l~~p~g~~v~~v~~~i~~~k-~~~~~~~sdv~~ 82 (355)
.++++.+|.||||+.. .| ..|..+ .-+.+... +. ..-+.+|.++..- ...++|++ .++++++++..+
T Consensus 166 iPg~~l~G~G~dilt~~~~g~vlD~~~~~g--~C~~~~~~-~~-~~~yr~P~nv~~~--~~~~~~~~~~~sse~y~S~~~ 239 (913)
T 3t5o_A 166 IPSVQLMGNGFHFLAGEPRGEVLDNSFTGG--ICKTVKSS-RT-SNPYRVPANLENV--GFEVQTAEDDLKTDFYKDLTS 239 (913)
T ss_dssp CTTGGGGGEEEETTTTEEEEECBCSSCCCS--CCCEECCT-TS-SSCEECCTTEEEE--ECCCCCCGGGEEEEEESCGGG
T ss_pred cchhhhhcCcEEeecCccccccccccccCC--eeeEEECC-CC-CceEecccceeeE--EEEEEEEecceeHhhhhhHHH
Confidence 3789999999997752 21 123221 01222221 11 2346789886422 33467888 889999999888
Q ss_pred HHH-----hhhhccceeeeeeccCC-ceEEEEEeecchhhHhHHHHhhc----ce--ecEEEEEEEEEEecCCCCcchHH
Q 018486 83 FHE-----MAGYFNEKSGISGNIPL-GSFNAMFNFTGCWQADAAATKSL----AM--VGNFISLYKVKLAKLNLVLREEI 150 (355)
Q Consensus 83 f~~-----ms~~fn~~~~L~~~ip~-g~f~~~f~~s~s~~~~~a~~ks~----~~--d~~~i~l~~~~l~~~~l~L~~~F 150 (355)
+.+ .+..++|+++|+. |. ...+++++++++...+.+.+++. .| ....+.+|+|+|+.++++|+++|
T Consensus 240 ~~~~~~~~~s~s~~~~~~~~i--~~~~s~~~~~~~s~s~~~~~~~~~s~~~~~~f~~~~~~~~~~~~~l~~~~l~L~~~F 317 (913)
T 3t5o_A 240 LGHNENQQGSFSSQGGSSFSV--PIFYSSKRSENINHNSAFKQAIQASHKKDSSFIRIHKVMKVLNFTTKAKDLHLSDVF 317 (913)
T ss_dssp GGC-----------------C--CCCCCTTTCCCCCCTTHHHHHHHHHHTSSEEEEEEEEEEEEEEEEECSSSCCBCHHH
T ss_pred HHHhhhhcceeecccceeecc--ccceeeeeEeeccchHHHHHHHHhhhccceEEEEEEEEEEEEEEEecCCCCCcCHHH
Confidence 643 3334455555554 32 12234455566555555433333 22 34556699999999889999999
Q ss_pred Hhh---CCCCCChHHHHHHHhccccEEEEEEEEccE-EEEEEee-c--ccCCCCHHHHHHHHHhhccccccccccccccC
Q 018486 151 RRA---VPYSWDPPLLASFIENYGTHIVTSITIGGR-DVVYIRQ-H--QSSPLSMMDIENYVKDIGDERFMDSKSQSSAA 223 (355)
Q Consensus 151 ~~~---LP~~yd~~~y~~fIe~YGTHyit~v~lGGk-~v~~v~~-~--~ss~ls~~evk~cl~~~~~~~f~~~~~~s~~~ 223 (355)
+++ ||..|++++|++||++||||||++++|||+ +++++.. + +.++++.+|+++||+.+++++|.+++......
T Consensus 318 ~~~l~~LP~~y~~~~Y~~fi~~yGTHyits~~lGG~~~~i~~~~~~~~~~~~~t~~ev~~cl~~~~~~~~~~~~~~~~~~ 397 (913)
T 3t5o_A 318 LKALNHLPLEYNSALYSRIFDDFGTHYFTSGSLGGVYDLLYQFSSEELKNSGLTEEEAKHCVRIETKKRVLFAKKTKVEH 397 (913)
T ss_dssp HHHTTSSCSSCCHHHHHHHHHHHCSEECSEEEEEEEEEEEEEEEHHHHHHHTCCHHHHHHHHHHHHHHHTSCCCCCCCCG
T ss_pred HHHHHhCccccCHHHHHHHHHhcCcEEEEeEEeccEEEEEEEEchhhHhhcCCCHHHHHHhhheecceEEEEEeeccccC
Confidence 995 799999999999999999999999999999 7766544 3 56699999999999998888886543322111
Q ss_pred cc-------cccCC---c-eEEEEEeecCCcc---------------hhhHHHHHHhhccCCceeeeeeeehhhhccCc-
Q 018486 224 PL-------KYKDK---D-VTVIFRRRGGDDL---------------EQSHAKWAETVQLAPDVINMTFTPIVSLLEGV- 276 (355)
Q Consensus 224 ~~-------~~~~~---~-~~vi~~~~GG~~l---------------~~~~~~W~~SV~~~P~vI~~~l~PI~eLl~~~- 276 (355)
.| .++.. . .+++..++||++. ..+|.+|++||+++|+||+|+|.|||+||+++
T Consensus 398 ~c~~~~~~~~~~~s~~~~~~~~~~~v~GG~~~~~~~L~~~~~~~~~~~~~~~~W~~Sv~~~P~~I~~~l~PI~eLv~~~~ 477 (913)
T 3t5o_A 398 RCTTNKLSEKHEGSFIQGAEKSISLIRGGRSEYGAALAWEKGSSGLEEKTFSEWLESVKENPAVIDFELAPIVDLVRNIP 477 (913)
T ss_dssp GGTSSTTGGGGTTCSGGGSSEEEECCBSSCHHHHHHHSCCTTSSSSSHHHHHHHHHHHHHSCEEEEEECCBGGGGCCSST
T ss_pred cccCCCcccccccccccccccceEEEeCCCcchhhhhhhhccCCCCCHHHHHHHHHHHhhCCceeeeeeccHHHHhhccC
Confidence 11 12211 1 2777888999852 25799999999999999999999999999986
Q ss_pred ---hhHHHHHHHHHHHHHhCCChhHHhhhhcccCCcccccCCCCC------ccCCCCCCc
Q 018486 277 ---PGIKHLARAIELYLEYKPPIEDLQYFLDYQIPRVWAPQHSNI------QRKEPVCSS 327 (355)
Q Consensus 277 ---p~k~~Lk~AI~~Yl~~kp~ieel~~fle~~~p~~wap~~n~~------~~~~~~~~~ 327 (355)
++|+||++||++||. ++.||+|+||+||+ ..+.++|+.
T Consensus 478 ~~~~kr~~Lk~Ai~~Yl~-------------e~~~c~C~PC~ngg~~~l~g~~C~C~C~~ 524 (913)
T 3t5o_A 478 CAVTKRNNLRKALQEYAA-------------KFDPCQCAPCPNNGRPTLSGTECLCVCQS 524 (913)
T ss_dssp THHHHHHHHHHHHHHHHH-------------TTCGGGSCCBTTTBEEEEETTEEEEECCT
T ss_pred chHHHHHHHHHHHHhhcc-------------ccccccCCCCCCCCEeecCCCceEEEccC
Confidence 578999999999999 99999999999999 456666665
No 5
>2rd7_A Complement component C8 alpha chain; membrane attack system, cleavage on PAIR of basic residues, complement alternate pathway, complement pathway; 2.15A {Homo sapiens} PDB: 2qqh_A
Probab=100.00 E-value=1.7e-39 Score=320.15 Aligned_cols=239 Identities=18% Similarity=0.200 Sum_probs=182.2
Q ss_pred eeecCCeeeCCCCcceeecCcceeEEeeccccHH-Hhhh--hccceeeeeeccCCceEEEEEeecchhhHhHHH--Hhhc
Q 018486 51 LVVSDGVLVPNVSVDIECSKGNRSIERIPVCSFH-EMAG--YFNEKSGISGNIPLGSFNAMFNFTGCWQADAAA--TKSL 125 (355)
Q Consensus 51 l~~p~g~~v~~v~~~i~~~k~~~~~~~sdv~~f~-~ms~--~fn~~~~L~~~ip~g~f~~~f~~s~s~~~~~a~--~ks~ 125 (355)
+.+|.++.. .....+|+..+.+++++++.++. +++. .++|.+++++.+|...+.+++++++|..+++.. +++.
T Consensus 81 yr~P~nv~~--~~~~~~~~~~~s~~~y~S~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~s~S~~~~f~~~~~~~~ 158 (367)
T 2rd7_A 81 FRKPYNFLK--YHFEALADTGISSEFYDNANDLLSKVKKDKSDSFGVTIGIGPAGSPLLVGVGVSHSQDTSFLNELNKYN 158 (367)
T ss_dssp EECCTTEEE--EEECCCCCCCCEEEEESSHHHHHHHHHHHTTSSEEEEECCC---CEEEEEESCCSSCCHHHHHHHHTTC
T ss_pred eecChhhee--eeEEEEEeeecchhheecHHHHHHHHHhhhccccccccccccccceEEEEeeecccchHHHHHHHHHhh
Confidence 678988632 23358999999999999998874 3433 457888888877877889999999988777766 3322
Q ss_pred ----ce--ecEEEEEEEEEEecCCCCcchHHHhh---CCCCCChHHHHHHHhccccEEEEEEEEccE-EEEEEe-ec--c
Q 018486 126 ----AM--VGNFISLYKVKLAKLNLVLREEIRRA---VPYSWDPPLLASFIENYGTHIVTSITIGGR-DVVYIR-QH--Q 192 (355)
Q Consensus 126 ----~~--d~~~i~l~~~~l~~~~l~L~~~F~~~---LP~~yd~~~y~~fIe~YGTHyit~v~lGGk-~v~~v~-~~--~ 192 (355)
.| ....+.+|+|+|++++++|+++|+++ ||..|++++|++||++||||||++++|||+ +++++. ++ +
T Consensus 159 ~~~~~f~~~~~~~~~~~~~l~~~~~~L~~~F~~~l~~LP~~y~~~~y~~fI~~yGTHyits~~lGG~~~~i~~~~~~~~~ 238 (367)
T 2rd7_A 159 EKKFIFTRIFTKVQTAHFKMRKDDIMLDEGMLQSLMELPDQYNYGMYAKFINDYGTHYITSGSMGGIYEYILVIDKAKME 238 (367)
T ss_dssp STTEEEEEEEEEEEEEEEEECSSSBCBCHHHHHHHHTSCSSCCHHHHHHHHHHHCSEEEEEEEEEEEEEEEEEEEHHHHH
T ss_pred cCCcEEEEEEEEEEEEEEEEECCCCCCCHHHHHHHHhCcccCCHHHHHHHHHHcCcEEEeccccCcEEEEEEEEehHhHh
Confidence 12 23445699999998889999999995 799999999999999999999999999999 777754 33 5
Q ss_pred cCCCCHHHHHHHHHhhcccccc-c--cccccccCccc-----------ccCCceEEEEEeecCCcc----------hhhH
Q 018486 193 SSPLSMMDIENYVKDIGDERFM-D--SKSQSSAAPLK-----------YKDKDVTVIFRRRGGDDL----------EQSH 248 (355)
Q Consensus 193 ss~ls~~evk~cl~~~~~~~f~-~--~~~~s~~~~~~-----------~~~~~~~vi~~~~GG~~l----------~~~~ 248 (355)
+++++.+|+++|++.+++++|. . .+++.....|. +.....+++..++||++. ..+|
T Consensus 239 ~s~~t~~e~~~cl~~~a~~~~~~~v~~~~~~~~~~c~~~~~~~~~~~~~~~~~~~~~~~v~GG~~~~~~~L~~~~~~~~~ 318 (367)
T 2rd7_A 239 SLGITSRDITTCFGGSLGIQYEDKINVGGGLSGDHCKKFGGGKTERARKAMAVEDIISRVRGGSSGWSGGLAQNRSTITY 318 (367)
T ss_dssp HHTCCHHHHHHHHHHHTTCCC------------CHHHHHTTCCSHHHHHHTTEEEEEECCBSCCC-----------CCCH
T ss_pred hCCCCHHHHHHHHHhhcCeeeeccceeecccCccccccccccccccccccccccceEEEEECCCccccchhccCCChHHH
Confidence 6799999999999999888772 1 11111111221 221122477788999753 2579
Q ss_pred HHHHHhhccCCceeeeeeeehhhhcc--Cchh----HHHHHHHHHHHHH
Q 018486 249 AKWAETVQLAPDVINMTFTPIVSLLE--GVPG----IKHLARAIELYLE 291 (355)
Q Consensus 249 ~~W~~SV~~~P~vI~~~l~PI~eLl~--~~p~----k~~Lk~AI~~Yl~ 291 (355)
.+|++||+++|+||+++|.|||+||+ ++|+ |++|++||++||.
T Consensus 319 ~~W~~Sv~~~P~~I~~~l~PI~~Ll~~~~~p~~~~kk~~Lk~Ai~~Yl~ 367 (367)
T 2rd7_A 319 RSWGRSLKYNPVVIDFEMQPIHEVLRHTSLGPLEAKRQNLRRALDQYLM 367 (367)
T ss_dssp HHHHHHHHHCCEEEEEEEEEGGGGGGGBTTCCCHHHHHHHHHHHHHHHC
T ss_pred HHHHHHhhcCCceEEEEEEEHHHhcCcccCCccHHHHHHHHHHHHHHhC
Confidence 99999999999999999999999999 6777 9999999999984
No 6
>2qp2_A Unknown protein; toxin, unknown function; 2.00A {Photorhabdus luminescens subsp}
Probab=100.00 E-value=6.4e-40 Score=334.58 Aligned_cols=298 Identities=16% Similarity=0.208 Sum_probs=209.0
Q ss_pred HHHHHhhccccceeeecCch-hhccCCCCCCCceEEe-----cCCCCccceeecCCeeeCCCCcceeecCcceeEEe---
Q 018486 7 TTLRYSIQALGRGFDVTSDI-RLLYCKGAPGSRLVHI-----DEDHHAGDLVVSDGVLVPNVSVDIECSKGNRSIER--- 77 (355)
Q Consensus 7 ~~~~~~~~~lG~GyD~t~d~-r~~~~k~~~~srli~~-----~~~~~~~~l~~p~g~~v~~v~~~i~~~k~~~~~~~--- 77 (355)
.++++|+++||+||||++|+ |+.+|+. +|+|+ ++.. ++.+.+ +| .+..+|..+.|....+++|.
T Consensus 36 ~~~~~g~~~lG~GyDI~g~y~~~~~~k~----~V~D~~~~~~~~~~-~~~v~i-~~-~~yrvP~ni~~~~~~~~~f~s~~ 108 (511)
T 2qp2_A 36 DTVIAGAEMIGTSYDVFGKYCNVGSCMN----SLFDERKINASEDN-FKKVTI-LG-KTLKVPYYIDCYSVGDLKYTNAS 108 (511)
T ss_dssp TTBCTTGGGTTEEECTTSSSSCGGGEEE----ECBCHHHHHTCGGG-EEEEEE-TT-EEEEEETTCEEEEEEEEEEEEEE
T ss_pred ccchhhhHhheeeeeecccccCccccCc----ceeechheecccCC-CceEee-CC-eeecCCcceEeeeccceEEEEEE
Confidence 34578999999999999997 8899993 89984 3344 556666 55 34566777877776666554
Q ss_pred -eccccHHHhhhhccceeeeee--ccCCceEEEEEeecchhhHhHHHHhhccee--cEEEEEEEEEEecCC--CCcchHH
Q 018486 78 -IPVCSFHEMAGYFNEKSGISG--NIPLGSFNAMFNFTGCWQADAAATKSLAMV--GNFISLYKVKLAKLN--LVLREEI 150 (355)
Q Consensus 78 -sdv~~f~~ms~~fn~~~~L~~--~ip~g~f~~~f~~s~s~~~~~a~~ks~~~d--~~~i~l~~~~l~~~~--l~L~~~F 150 (355)
+|+.+|++ .++.++++++ ++++|.++++|+.+. +.+|..+|. ...+.+|+++++.+. ..|+++|
T Consensus 109 yeS~~ey~~---~l~~~~svsgs~~~fsgs~~a~F~~s~------~~~k~~~f~~v~~~i~~y~~~~~~~~l~~~Ls~~F 179 (511)
T 2qp2_A 109 GESIESYQS---NISSKSRIKGNYLFFSASLKVDFDTDS------LTDFENAFSRIQYTYDLYILKSSAEALKEFLKESV 179 (511)
T ss_dssp ESSHHHHHH---HHHHTTCCSSSCCTTTTHHHHHSCTGG------GGCTTEEEEEEEEEEEEEEEECCHHHHGGGBCHHH
T ss_pred ecCHHHHHH---HHHHhheeeeceeeeeEEEEEEecccc------ccccceEEEEEEEEEEEEEEEeChhhhhhhcCHHH
Confidence 67777655 3555666665 467776666665432 233444454 567788999988764 3899999
Q ss_pred HhhCCCCCChHHHHHHHhccccEEEEEEEEccE-EEEEEeec-ccCCCCHHHHHHHHHhhccccccccccccccC----c
Q 018486 151 RRAVPYSWDPPLLASFIENYGTHIVTSITIGGR-DVVYIRQH-QSSPLSMMDIENYVKDIGDERFMDSKSQSSAA----P 224 (355)
Q Consensus 151 ~~~LP~~yd~~~y~~fIe~YGTHyit~v~lGGk-~v~~v~~~-~ss~ls~~evk~cl~~~~~~~f~~~~~~s~~~----~ 224 (355)
+++|+..+++.+|++||++||||||++++|||+ ++++..+. ...+ ..++..|++......+ +.+...... .
T Consensus 180 ~k~L~~~~~~~~y~~fI~~YGTHyits~~lGG~~~y~~s~~~~~~~~--~~~is~~a~as~~~~~-~~s~~~~~~~~~~~ 256 (511)
T 2qp2_A 180 KTALDKADTEEDMNDLFNTWGSHFLSGVVMGGCAQYSSSTNKYTSNL--TNSFDVVAAASFAGFI-GLSARTGNSFMEDI 256 (511)
T ss_dssp HHHHHHCCSHHHHHHHHHHTCSEEECEEEEEEEEEEEEEEETTTSCC--SSCHHHHHHHHHHHHT-TCCCCCTTTHHHHH
T ss_pred HHhhccccchhhHHHHHHhCCeEEEEeeecccEEEEEEeeccccccc--cceeeeEEEEEEeeee-eecccccccccccc
Confidence 999988889999999999999999999999999 65554443 2222 2344444433221111 111110000 0
Q ss_pred ccccCCceEEEEEeecCC-----cc-----------------hhhHHHHHHhhccCCceeeee----eeehhhhccCchh
Q 018486 225 LKYKDKDVTVIFRRRGGD-----DL-----------------EQSHAKWAETVQLAPDVINMT----FTPIVSLLEGVPG 278 (355)
Q Consensus 225 ~~~~~~~~~vi~~~~GG~-----~l-----------------~~~~~~W~~SV~~~P~vI~~~----l~PI~eLl~~~p~ 278 (355)
..|+. ..+++..++||+ +. ..+|.+|++||+++|++|+|+ |.|||+||++.++
T Consensus 257 ~sf~s-~~~~~~~V~GG~~s~~d~~~~aL~~~~ps~~~~~~~~~~y~~W~~SV~~nP~vIdf~~~~sL~PI~eLV~~~~K 335 (511)
T 2qp2_A 257 KKFRS-ASNIKTHAIGGDLSRFDPFGGATSADQPSAEEIAAAKKAFEDWKASVPNAPELVNFADSNPLTGIWELCSDRTQ 335 (511)
T ss_dssp HHHHH-TEEEEEEEESSCTTTCCTTTTCCCCSSCCHHHHHHHHHHHHHHHHHSTTSCEEEEECSSCCEEEGGGGCSCHHH
T ss_pred ccccc-cCceEEEEECCCCcccccccceeccCCCcccccccchhHHHHHHHHhhhchheEeecCCccceeHHHhccCHHH
Confidence 12222 245666789997 21 137999999999999999996 9999999999999
Q ss_pred HHHHHHHHHHHHHhCCChhHHhhhhcccCCcccccCCCCC-------ccCCCCCCceeEEeecceeEecC
Q 018486 279 IKHLARAIELYLEYKPPIEDLQYFLDYQIPRVWAPQHSNI-------QRKEPVCSSLQFSLMGPKLYISP 341 (355)
Q Consensus 279 k~~Lk~AI~~Yl~~kp~ieel~~fle~~~p~~wap~~n~~-------~~~~~~~~~l~f~~~g~~l~~~~ 341 (355)
|++||+||++||. + ..|+|+||+||. .+|.|.||. -+-|+++=+..
T Consensus 336 k~~LkrAieeYl~-------------e-~~~~~~~~~~n~~~~~~~g~~c~c~cp~---g~~g~~~~~~~ 388 (511)
T 2qp2_A 336 KAKLKKHFETVWA-------------P-AESAKRRVHADYIDEIIIGINNTNTPPE---GYIGLKSTKDE 388 (511)
T ss_dssp HHHHHHHHHHTHH-------------H-HHHHTTCCCCCEEEEEEEEECTTCCCCT---TCEECBSSSBC
T ss_pred HHHHHHHHHHHHh-------------h-cCcccccccCcceeEEecCCccCccCCC---Ccccccccccc
Confidence 9999999999999 6 567799999976 678999997 23366654443
No 7
>3kk7_A Putative cell invasion protein with MAC/perforin; STR genomics, joint center for structural genomics, JCSG; 2.46A {Bacteroides thetaiotaomicron vpi-5482}
Probab=99.64 E-value=4.7e-18 Score=169.12 Aligned_cols=265 Identities=11% Similarity=0.102 Sum_probs=146.5
Q ss_pred HHHHhhccccceeeec-Cchhh--ccCCCCCCCceEEecCCCCccceeecCCeeeCCCCcceeecCcceeEEeeccccHH
Q 018486 8 TLRYSIQALGRGFDVT-SDIRL--LYCKGAPGSRLVHIDEDHHAGDLVVSDGVLVPNVSVDIECSKGNRSIERIPVCSFH 84 (355)
Q Consensus 8 ~~~~~~~~lG~GyD~t-~d~r~--~~~k~~~~srli~~~~~~~~~~l~~p~g~~v~~v~~~i~~~k~~~~~~~sdv~~f~ 84 (355)
+.....|+||+||||+ +|+-. ..|- +.++|||++-. ..-|+.+.. + .+.....+...++ +.-+|
T Consensus 48 ~~~~~~d~LGygYdI~~G~yi~Gd~~s~---k~pVIDIekl~----~~~p~~i~~-~---~~~t~~~~~~sY~-~~d~~- 114 (541)
T 3kk7_A 48 SFTDATDFLGCSYAVENGTSIIGDFANA---KYPVVNMKKLL----ERYPSYINP-K---ELRTTETKALSYS-DFDRL- 114 (541)
T ss_dssp -CCSGGGGTTEEECSTTSCSCTTCGGGE---EEESBCHHHHH----HHCGGGEEE-E---EEEEEEEEEEEES-STTGG-
T ss_pred ccCccccccccccccCCCcccccCcccc---CCceeeHHHhh----hhCccceee-c---cccccceeeeecc-chhhH-
Confidence 3456899999999997 77663 2333 36999997632 223544432 1 1111111111222 21222
Q ss_pred HhhhhccceeeeeeccCCceEEEEEeecchhhHhHHH------HhhcceecEEEEEEEEEEecCC--C------CcchHH
Q 018486 85 EMAGYFNEKSGISGNIPLGSFNAMFNFTGCWQADAAA------TKSLAMVGNFISLYKVKLAKLN--L------VLREEI 150 (355)
Q Consensus 85 ~ms~~fn~~~~L~~~ip~g~f~~~f~~s~s~~~~~a~------~ks~~~d~~~i~l~~~~l~~~~--l------~L~~~F 150 (355)
+..+++-.+++.++++..|.|+. +..+.-...|.+ +...+..--.+...++.|.... | .|++.|
T Consensus 115 e~~s~~tKkv~s~fSln~g~Fs~--g~k~TiT~~F~s~~~~SsKysygel~v~~~~rr~~L~~s~~~L~~i~s~YLt~~F 192 (541)
T 3kk7_A 115 EKNKTFTKTVKSGFSLNLGPFKF--GRQKTIKETFVHNTDDSEKVVHGELSIEVVNGMLNLQTAPSALRKIAADYLDELF 192 (541)
T ss_dssp GTTCTTGGGBCTTSCCCCHHHHH--HHHHHHHHHSCCCCCCGGGEEEEEEEEEEEEEEEEECCCHHHHHHHHHHCBCHHH
T ss_pred HHHHHHHhhhccceeeecccccc--ccccceehhccccccccceeeEEEEEEeeeccEEEecCChhHHHHHHHhhchHHH
Confidence 22333333444443322222211 111222222211 1111112223446777887642 2 588999
Q ss_pred HhhCCCCCChHHHHHHHhccccEEEEEEEEccE-EEEEEeecccCCCCHHHHHHHHHhhccccc----c----------c
Q 018486 151 RRAVPYSWDPPLLASFIENYGTHIVTSITIGGR-DVVYIRQHQSSPLSMMDIENYVKDIGDERF----M----------D 215 (355)
Q Consensus 151 ~~~LP~~yd~~~y~~fIe~YGTHyit~v~lGGk-~v~~v~~~~ss~ls~~evk~cl~~~~~~~f----~----------~ 215 (355)
+++|-. +.+ .+||+.||||++++..+||| .+.|. ....+..+.++-++-+....++++ . +
T Consensus 193 i~dL~n-~s~---~eIVq~YGTHVLTDI~~GGr~~alY~-g~~~~~~~~~~Kek~md~~I~As~~~~~~~~~~~~~~i~~ 267 (541)
T 3kk7_A 193 VDALYN-SSM---VELMQSYGEFVLTGYYTGGRASALFY-GVDTNSIQFDSKEKDMDVAINASYEWKNKKPTAPSDTIHS 267 (541)
T ss_dssp HHHHHH-SCH---HHHHHHHCSEEECEEEEEEEEEEEEE-EEESSCCSHHHHHHHHHHHHHHSEEEESCCCC--------
T ss_pred HHHHhh-CCH---HHHHHhhCCeEEEEEEeccEEEEEEE-EeeccccchHHhhhhhhheeeeeeeeccccccccccccee
Confidence 998654 344 89999999999999999999 66554 333333344444443322222222 1 1
Q ss_pred ccccc--c-----cCcccccCCceEEEEEeecCCcc-------------hhhHHHHHHhhcc--CCceeee---eeeehh
Q 018486 216 SKSQS--S-----AAPLKYKDKDVTVIFRRRGGDDL-------------EQSHAKWAETVQL--APDVINM---TFTPIV 270 (355)
Q Consensus 216 ~~~~s--~-----~~~~~~~~~~~~vi~~~~GG~~l-------------~~~~~~W~~SV~~--~P~vI~~---~l~PI~ 270 (355)
.++.- . ......+.....+.....||++- ..++..|.+||.+ +..+|++ .|.||+
T Consensus 268 ~S~n~s~~~~~g~~~Sl~kkn~~~~~~ikT~GG~~g~~i~~~~~~~~~~sIDls~W~~Sl~Ds~n~~LIDI~~~gLyPIy 347 (541)
T 3kk7_A 268 ASGNLSIGTKRENSETITNKFSALSYSIKTLGGAYGYSISTPPYDITNYSIDLTPWLQSLNDPKTHTMIDLQDGGLYPIS 347 (541)
T ss_dssp --CEEEESCCHHHHHHHHTTEEEEEEEEEEESSSSSCSSCCCCEETTTCCEECHHHHHHTTSGGGCEEEEECTTCEEEGG
T ss_pred eeeecccCcccccccccccccceEEEEEEeeCCCccccccccCCCCCCcceehHHhhhhhcccccceEEEcCCCCeeehH
Confidence 11110 0 00111222345555677899531 2479999999998 6889986 899999
Q ss_pred hhccCchhHHHHHHHHHHHHHh
Q 018486 271 SLLEGVPGIKHLARAIELYLEY 292 (355)
Q Consensus 271 eLl~~~p~k~~Lk~AI~~Yl~~ 292 (355)
+||.+...|+.|+.|+++|+..
T Consensus 348 DfI~e~n~Kqri~~t~~~~l~~ 369 (541)
T 3kk7_A 348 DFILEENFKQRYNDTHMDFQYQ 369 (541)
T ss_dssp GGCCCHHHHHHHHHHHTTSCCC
T ss_pred HhhhchhHHHHHHHHHhhcccc
Confidence 9999998999999999999874
No 8
>4fxv_A ELAV-like protein 1; RNA recognition motif, putative RNA-binding domain, transcri structural genomics, joint center for structural genomics; 1.90A {Homo sapiens}
Probab=31.27 E-value=31 Score=26.00 Aligned_cols=23 Identities=22% Similarity=0.284 Sum_probs=20.5
Q ss_pred HHhhCCCCCChHHHHHHHhcccc
Q 018486 150 IRRAVPYSWDPPLLASFIENYGT 172 (355)
Q Consensus 150 F~~~LP~~yd~~~y~~fIe~YGT 172 (355)
|...||...+..++.+++..||+
T Consensus 23 fV~nLp~~~te~~L~~~F~~~G~ 45 (99)
T 4fxv_A 23 IVNYLPQNMTQDELRSLFSSIGE 45 (99)
T ss_dssp EEESCCTTCCHHHHHHHHHTTSC
T ss_pred EEeCCCCCCCHHHHHHHHHhcCC
Confidence 44579999999999999999997
No 9
>4f25_A Polyadenylate-binding protein 1; RRM fold, translation initiation, RNA-binding, EIF4G-binding translation; 1.90A {Homo sapiens} PDB: 4f26_A 2k8g_A
Probab=30.66 E-value=32 Score=26.50 Aligned_cols=23 Identities=17% Similarity=0.228 Sum_probs=20.8
Q ss_pred HHhhCCCCCChHHHHHHHhcccc
Q 018486 150 IRRAVPYSWDPPLLASFIENYGT 172 (355)
Q Consensus 150 F~~~LP~~yd~~~y~~fIe~YGT 172 (355)
|...||..++..++.+++..||.
T Consensus 9 fV~nLp~~~te~~L~~~F~~~G~ 31 (115)
T 4f25_A 9 FIKNLDKSIDNKALYDTFSAFGN 31 (115)
T ss_dssp EEESCCTTCCHHHHHHHHGGGSC
T ss_pred EECCCCCCCCHHHHHHHHhccCC
Confidence 55679999999999999999997
No 10
>1rju_V Metallothionein; Cu(I)-thiolate, metal binding protein; 1.44A {Synthetic} SCOP: g.46.1.1 PDB: 1aoo_A 1aqq_A 1aqr_A 1fmy_A
Probab=27.92 E-value=29 Score=21.29 Aligned_cols=19 Identities=16% Similarity=0.146 Sum_probs=13.7
Q ss_pred cccccCCCCC-ccCCCCCCc
Q 018486 309 RVWAPQHSNI-QRKEPVCSS 327 (355)
Q Consensus 309 ~~wap~~n~~-~~~~~~~~~ 327 (355)
|+|..|.||. -.|.++||.
T Consensus 5 cqcgscknneqcqkscscpt 24 (36)
T 1rju_V 5 CQCGSCKNNEQCQKSCSCPT 24 (36)
T ss_dssp CCSTTTTTCGGGTTSCCSCT
T ss_pred cccCCccChHHHhhcCCCCC
Confidence 6778898888 346677774
No 11
>2dnp_A RNA-binding protein 14; RRM domain, RBD, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=26.96 E-value=36 Score=24.67 Aligned_cols=51 Identities=14% Similarity=0.163 Sum_probs=32.8
Q ss_pred HHhhCCCCCChHHHHHHHhccccEEEEEEEEccEEEEEEeecccCCCCHHHHHHHHHhh
Q 018486 150 IRRAVPYSWDPPLLASFIENYGTHIVTSITIGGRDVVYIRQHQSSPLSMMDIENYVKDI 208 (355)
Q Consensus 150 F~~~LP~~yd~~~y~~fIe~YGTHyit~v~lGGk~v~~v~~~~ss~ls~~evk~cl~~~ 208 (355)
|...||...+..++.+++..||+ |.++.+--- +-+|.- -+.++.++++...
T Consensus 13 ~V~nlp~~~t~~~l~~~F~~~G~--v~~~~~~~~-~afV~f-----~~~~~a~~A~~~l 63 (90)
T 2dnp_A 13 FVGNVSAACTSQELRSLFERRGR--VIECDVVKD-YAFVHM-----EKEADAKAAIAQL 63 (90)
T ss_dssp EEESCCTTCCHHHHHHHHHHHSC--EEEEEECSS-CEEEEE-----SCHHHHHHHHHHH
T ss_pred EEeCCCCCCCHHHHHHHHHcCCC--EEEEEEECC-EEEEEE-----CCHHHHHHHHHHh
Confidence 44579999999999999999998 555554311 211111 2456677776643
No 12
>3bs9_A Nucleolysin TIA-1 isoform P40; RNA recognition motif, RRM, RNA binding domain, RBD, RNA splicing, apoptosis, phosphoprotein, RNA-binding; 1.95A {Homo sapiens}
Probab=26.95 E-value=44 Score=23.78 Aligned_cols=28 Identities=7% Similarity=0.195 Sum_probs=22.3
Q ss_pred HhhCCCCCChHHHHHHHhccccEEEEEEEE
Q 018486 151 RRAVPYSWDPPLLASFIENYGTHIVTSITI 180 (355)
Q Consensus 151 ~~~LP~~yd~~~y~~fIe~YGTHyit~v~l 180 (355)
...||...+..++.++++.||. |.++.+
T Consensus 11 v~nlp~~~t~~~l~~~F~~~G~--i~~v~i 38 (87)
T 3bs9_A 11 VGDLSPEITTAAIAAAFAPFGR--ISDARV 38 (87)
T ss_dssp EESCCTTCCHHHHHHHHGGGSC--EEEEEE
T ss_pred EeCCCCCCCHHHHHHHHHhcCC--EeEEEE
Confidence 3468988999999999999998 444444
No 13
>2cqd_A RNA-binding region containing protein 1; RNA recognition motif, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=26.80 E-value=39 Score=25.79 Aligned_cols=30 Identities=17% Similarity=0.419 Sum_probs=23.6
Q ss_pred HHHhhCCCCCChHHHHHHHhccccEEEEEEEE
Q 018486 149 EIRRAVPYSWDPPLLASFIENYGTHIVTSITI 180 (355)
Q Consensus 149 ~F~~~LP~~yd~~~y~~fIe~YGTHyit~v~l 180 (355)
=|...||...+..++.++++.||+ |.++.+
T Consensus 20 l~V~nlp~~~t~~~l~~~F~~~G~--i~~v~i 49 (116)
T 2cqd_A 20 IFVGGLPYHTTDASLRKYFEGFGD--IEEAVV 49 (116)
T ss_dssp EEEECCCSSCCHHHHHHHHHTTSC--EEEEEE
T ss_pred EEEeCCCCCCCHHHHHHHHHhCCC--eeEEEE
Confidence 344579999999999999999998 444444
No 14
>2dnh_A Bruno-like 5, RNA binding protein; RRM domain, RBD, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} PDB: 2dnk_A 2dno_A
Probab=26.60 E-value=39 Score=25.15 Aligned_cols=23 Identities=4% Similarity=0.075 Sum_probs=20.2
Q ss_pred HHhhCCCCCChHHHHHHHhcccc
Q 018486 150 IRRAVPYSWDPPLLASFIENYGT 172 (355)
Q Consensus 150 F~~~LP~~yd~~~y~~fIe~YGT 172 (355)
|...||...+..++.+++..||.
T Consensus 19 ~v~nLp~~~t~~~l~~~F~~~G~ 41 (105)
T 2dnh_A 19 FVGMLNKQQSEEDVLRLFQPFGV 41 (105)
T ss_dssp EEESCCTTCCHHHHHHHHTTTSC
T ss_pred EEeCCCCCCCHHHHHHHHHhcCC
Confidence 34579999999999999999998
No 15
>2dnq_A RNA-binding protein 4B; RRM domain,RBD, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=25.07 E-value=47 Score=24.02 Aligned_cols=24 Identities=21% Similarity=0.310 Sum_probs=20.6
Q ss_pred HHhhCCCCCChHHHHHHHhccccE
Q 018486 150 IRRAVPYSWDPPLLASFIENYGTH 173 (355)
Q Consensus 150 F~~~LP~~yd~~~y~~fIe~YGTH 173 (355)
|...||...+..++.++++.||+-
T Consensus 12 ~V~nlp~~~t~~~l~~~F~~~G~i 35 (90)
T 2dnq_A 12 FIGNLPREATEQEIRSLFEQYGKV 35 (90)
T ss_dssp EEESCCSSCCHHHHHHHHHTSSCE
T ss_pred EEeCCCCCCCHHHHHHHHHhCCCE
Confidence 445799999999999999999973
No 16
>2ytc_A PRE-mRNA-splicing factor RBM22; RRM domain, RBD, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=24.80 E-value=47 Score=23.53 Aligned_cols=29 Identities=14% Similarity=0.212 Sum_probs=22.9
Q ss_pred HHhhCCCCCChHHHHHHHhccccEEEEEEEE
Q 018486 150 IRRAVPYSWDPPLLASFIENYGTHIVTSITI 180 (355)
Q Consensus 150 F~~~LP~~yd~~~y~~fIe~YGTHyit~v~l 180 (355)
|...||...+..++.+++..||. |.++.+
T Consensus 16 ~V~~l~~~~t~~~l~~~f~~~G~--i~~~~~ 44 (85)
T 2ytc_A 16 YVGGLGDTITETDLRNHFYQFGE--IRTITV 44 (85)
T ss_dssp EEECCTTTSCHHHHHHHHHTTSC--EEEEEE
T ss_pred EEcCCCCCCCHHHHHHHHHhCCC--EeEEEE
Confidence 34479998999999999999998 444444
No 17
>2dnz_A Probable RNA-binding protein 23; RNA recognition motif, RRM, RNA binding domain, RBD, RNP, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=23.72 E-value=49 Score=24.02 Aligned_cols=23 Identities=13% Similarity=0.352 Sum_probs=19.9
Q ss_pred HHhhCCCCCChHHHHHHHhcccc
Q 018486 150 IRRAVPYSWDPPLLASFIENYGT 172 (355)
Q Consensus 150 F~~~LP~~yd~~~y~~fIe~YGT 172 (355)
|...||...+..++.++++.||.
T Consensus 9 ~v~nlp~~~t~~~l~~~f~~~G~ 31 (95)
T 2dnz_A 9 YVGSLHFNITEDMLRGIFEPFGK 31 (95)
T ss_dssp EEESCCTTCCHHHHHHHHTTTSC
T ss_pred EEeCCCCCCCHHHHHHHHHhcCC
Confidence 34578988999999999999997
No 18
>1sjq_A Polypyrimidine tract-binding protein 1; babbab motif, RNA binding protein; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=23.30 E-value=46 Score=25.96 Aligned_cols=29 Identities=21% Similarity=0.243 Sum_probs=23.6
Q ss_pred HHhhCCCCCChHHHHHHHhccccEEEEEEEE
Q 018486 150 IRRAVPYSWDPPLLASFIENYGTHIVTSITI 180 (355)
Q Consensus 150 F~~~LP~~yd~~~y~~fIe~YGTHyit~v~l 180 (355)
|...||...+..++.++++.||+ |+++.+
T Consensus 20 fV~nLp~~vte~dL~~lF~~fG~--V~~v~i 48 (105)
T 1sjq_A 20 HIRKLPIDVTEGEVISLGLPFGK--VTNLLM 48 (105)
T ss_dssp EECSCCTTSCHHHHHHHHHHHCC--EEEEEE
T ss_pred EEeCCCCCCCHHHHHHHHHhcCC--EEEEEE
Confidence 44579998999999999999998 555554
No 19
>2cqg_A TDP-43, TAR DNA-binding protein-43; RNA recognition motif, RRM, RNA binding domain, RBD, RNP, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=23.29 E-value=53 Score=24.33 Aligned_cols=25 Identities=16% Similarity=0.384 Sum_probs=21.1
Q ss_pred HHhhCCCCCChHHHHHHHhccccEE
Q 018486 150 IRRAVPYSWDPPLLASFIENYGTHI 174 (355)
Q Consensus 150 F~~~LP~~yd~~~y~~fIe~YGTHy 174 (355)
|...||...+..++.+++..||+-.
T Consensus 19 ~v~nlp~~~t~~~l~~~F~~~G~i~ 43 (103)
T 2cqg_A 19 IVLGLPWKTTEQDLKEYFSTFGEVL 43 (103)
T ss_dssp EEESCCSSCCHHHHHHHHGGGSCEE
T ss_pred EEEcCCCcCCHHHHHHHHHhcCCeE
Confidence 4457999999999999999999843
No 20
>3ucg_A Polyadenylate-binding protein 2; ferredoxin-like, structural genomics, joint center for struc genomics, JCSG, protein structure initiative; HET: PGE; 1.95A {Homo sapiens} PDB: 3b4d_A 3b4m_A
Probab=23.21 E-value=57 Score=23.27 Aligned_cols=21 Identities=19% Similarity=0.278 Sum_probs=19.0
Q ss_pred hhCCCCCChHHHHHHHhcccc
Q 018486 152 RAVPYSWDPPLLASFIENYGT 172 (355)
Q Consensus 152 ~~LP~~yd~~~y~~fIe~YGT 172 (355)
..||...+..++.+++..||.
T Consensus 12 ~nlp~~~t~~~l~~~F~~~G~ 32 (89)
T 3ucg_A 12 GNVDYGATAEELEAHFHGCGS 32 (89)
T ss_dssp ESCCTTCCHHHHHHHHGGGCC
T ss_pred eCCCCCCCHHHHHHHHHhCCC
Confidence 468999999999999999997
No 21
>2e5h_A Zinc finger CCHC-type and RNA-binding motif- containing protein 1; RRM domain, RBD, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=23.19 E-value=46 Score=24.13 Aligned_cols=29 Identities=28% Similarity=0.452 Sum_probs=22.8
Q ss_pred HHhhCCCCCChHHHHHHHhccccEEEEEEEE
Q 018486 150 IRRAVPYSWDPPLLASFIENYGTHIVTSITI 180 (355)
Q Consensus 150 F~~~LP~~yd~~~y~~fIe~YGTHyit~v~l 180 (355)
|...||...+..++.++++.||. |.++.+
T Consensus 20 ~V~nlp~~~t~~~l~~~f~~~G~--v~~v~i 48 (94)
T 2e5h_A 20 YVSNLPFSLTNNDLYRIFSKYGK--VVKVTI 48 (94)
T ss_dssp EEESCCTTSCHHHHHHHTTTTSC--EEEEEE
T ss_pred EEECCCCCCCHHHHHHHHHhcCC--eEEEEE
Confidence 34579999999999999999997 444444
No 22
>2do4_A Squamous cell carcinoma antigen recognized by T- cells 3; RRM domaim, RDB, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=23.13 E-value=51 Score=24.32 Aligned_cols=29 Identities=21% Similarity=0.369 Sum_probs=22.7
Q ss_pred HHhhCCCCCChHHHHHHHhccccEEEEEEEE
Q 018486 150 IRRAVPYSWDPPLLASFIENYGTHIVTSITI 180 (355)
Q Consensus 150 F~~~LP~~yd~~~y~~fIe~YGTHyit~v~l 180 (355)
|...||...+..++.++++.||. |.++.+
T Consensus 21 ~v~nlp~~~t~~~l~~~F~~~G~--i~~v~i 49 (100)
T 2do4_A 21 FISGLPFSCTKEELEEICKAHGT--VKDLRL 49 (100)
T ss_dssp EEESCCTTCCHHHHHHHHTTTSC--EEEEEE
T ss_pred EEeCCCCCCCHHHHHHHHHhCCC--eEEEEE
Confidence 44579999999999999999997 344443
No 23
>2d9p_A Polyadenylate-binding protein 3; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=23.01 E-value=41 Score=25.03 Aligned_cols=52 Identities=19% Similarity=0.237 Sum_probs=32.8
Q ss_pred HHhhCCCCCChHHHHHHHhccccEEEEEEEEc---cE--EEEEEeecccCCCCHHHHHHHHHhh
Q 018486 150 IRRAVPYSWDPPLLASFIENYGTHIVTSITIG---GR--DVVYIRQHQSSPLSMMDIENYVKDI 208 (355)
Q Consensus 150 F~~~LP~~yd~~~y~~fIe~YGTHyit~v~lG---Gk--~v~~v~~~~ss~ls~~evk~cl~~~ 208 (355)
|...||...+..++.+++..||+ |.++.+= |+ -+-+|.- -+.++.++++...
T Consensus 19 ~V~nlp~~~t~~~l~~~F~~~G~--i~~v~i~~~~g~~~g~afV~f-----~~~~~A~~A~~~l 75 (103)
T 2d9p_A 19 YVKNLDDGIDDERLRKAFSPFGT--ITSAKVMMEGGRSKGFGFVCF-----SSPEEATKAVTEM 75 (103)
T ss_dssp EEECCCTTCCHHHHHHTTTTTSC--EEEEEEEECSSSEEEEEEEEE-----SSHHHHHHHHHHH
T ss_pred EEeCCCCCCCHHHHHHHHHhcCC--EEEEEEEcCCCCcCEEEEEEE-----CCHHHHHHHHHHh
Confidence 44579999999999999999998 4444432 22 2222221 1456677777643
No 24
>2dgo_A Cytotoxic granule-associated RNA binding protein 1; RRM domain, structural genomics, NPPSFA; NMR {Mus musculus} PDB: 2rne_A 2dh7_A
Probab=22.79 E-value=55 Score=24.79 Aligned_cols=52 Identities=10% Similarity=0.243 Sum_probs=32.9
Q ss_pred HHhhCCCCCChHHHHHHHhccccEEEEEEEE-----ccE--EEEEEeecccCCCCHHHHHHHHHhh
Q 018486 150 IRRAVPYSWDPPLLASFIENYGTHIVTSITI-----GGR--DVVYIRQHQSSPLSMMDIENYVKDI 208 (355)
Q Consensus 150 F~~~LP~~yd~~~y~~fIe~YGTHyit~v~l-----GGk--~v~~v~~~~ss~ls~~evk~cl~~~ 208 (355)
|...||...+..++.+++..||. |.++.+ .|+ -+-+|.- .+.++.++++...
T Consensus 19 ~V~nlp~~~t~~~l~~~F~~~G~--i~~v~i~~~~~~~~~~g~afV~f-----~~~~~a~~A~~~l 77 (115)
T 2dgo_A 19 FVGDLSPEITTEDIKAAFAPFGR--ISDARVVKDMATGKSKGYGFVSF-----FNKWDAENAIQQM 77 (115)
T ss_dssp EEESCCTTCCHHHHHHHHGGGSC--EEEEEEEECTTTCCEEEEEEEEE-----SSHHHHHHHHHHT
T ss_pred EEeCCCCCCCHHHHHHHHHhcCC--eEEEEEEEcCCCCCcceEEEEEE-----CCHHHHHHHHHHh
Confidence 34479998999999999999998 444443 222 1222211 2456777777643
No 25
>3s7r_A Heterogeneous nuclear ribonucleoprotein A/B; ferredoxin-like, structural genomics, joint center for struc genomics, JCSG; 2.15A {Homo sapiens} PDB: 1hd0_A 1hd1_A
Probab=22.11 E-value=55 Score=23.33 Aligned_cols=24 Identities=8% Similarity=0.246 Sum_probs=20.6
Q ss_pred HHhhCCCCCChHHHHHHHhccccE
Q 018486 150 IRRAVPYSWDPPLLASFIENYGTH 173 (355)
Q Consensus 150 F~~~LP~~yd~~~y~~fIe~YGTH 173 (355)
|...||...+..++.+++..||+=
T Consensus 15 ~V~nlp~~~t~~~l~~~F~~~G~i 38 (87)
T 3s7r_A 15 FVGGLSWDTSKKDLKDYFTKFGEV 38 (87)
T ss_dssp EEECCCTTCCHHHHHHHHTTTSCE
T ss_pred EEeCCCCCCCHHHHHHHHHhCCCE
Confidence 445799999999999999999973
No 26
>2cq3_A RNA-binding protein 9; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=21.78 E-value=59 Score=24.06 Aligned_cols=24 Identities=17% Similarity=0.457 Sum_probs=20.5
Q ss_pred HHhhCCCCCChHHHHHHHhccccE
Q 018486 150 IRRAVPYSWDPPLLASFIENYGTH 173 (355)
Q Consensus 150 F~~~LP~~yd~~~y~~fIe~YGTH 173 (355)
|...||...+..++.++++.||+-
T Consensus 19 ~V~nlp~~~t~~~l~~~f~~~G~v 42 (103)
T 2cq3_A 19 HVSNIPFRFRDPDLRQMFGQFGKI 42 (103)
T ss_dssp EEESCCTTCCHHHHHHHGGGTSCE
T ss_pred EEeCCCCCCCHHHHHHHHHhcCCe
Confidence 445799999999999999999973
No 27
>1pfo_A Perfringolysin O, PFO; toxin, thiol-activated cytolysin, hemolysis, cytolysis; 2.20A {Clostridium perfringens} SCOP: f.9.1.1 PDB: 1m3i_A 1m3j_A 2bk2_A 2bk1_A 3cqf_A
Probab=21.76 E-value=69 Score=32.17 Aligned_cols=128 Identities=14% Similarity=0.102 Sum_probs=61.4
Q ss_pred ecEEEEEEEEEEecCCCCcchHHHhhCCCCCChHHHHH--HHhccccEEEEEEEEccEEEEEEeecccCCCCHHHHHHHH
Q 018486 128 VGNFISLYKVKLAKLNLVLREEIRRAVPYSWDPPLLAS--FIENYGTHIVTSITIGGRDVVYIRQHQSSPLSMMDIENYV 205 (355)
Q Consensus 128 d~~~i~l~~~~l~~~~l~L~~~F~~~LP~~yd~~~y~~--fIe~YGTHyit~v~lGGk~v~~v~~~~ss~ls~~evk~cl 205 (355)
.++.-..|++.|.. |-..++-|-..+ ++.++.+ +-+.|==-||.+++.|=.-++.+.+.. +.++++..+
T Consensus 224 vkfkQ~fYTVs~D~-P~~p~d~F~~~v----t~~~L~~~Gv~~~~~PvYVSSV~YGR~~yl~iET~~----s~~ev~aA~ 294 (500)
T 1pfo_A 224 LAYKQIFYTVSADL-PKNPSDLFDDSV----TFNDLKQKGVSNEAPPLMVSNVAYGRTIYVKLETTS----SSKDVQAAF 294 (500)
T ss_dssp EEEEEEEEEEEECC-CSSHHHHBCTTC----CHHHHHHTTCBTTBCEEEEEEEEEEEEEEEEEEESC----CCTTHHHHH
T ss_pred EEEEEEEEEEEecC-CCCHHHhcCCCC----CHHHHHhcccCCCCCceEEEEeccccEEEEEEEecC----cHHHHHHHH
Confidence 44444477887773 211222232222 1223322 223555679999999866555544433 345777777
Q ss_pred HhhccccccccccccccC-cccccCCceEEEEEeecCCcc------hhhHHHHHHhh-------ccCC-ceeeeeeeehh
Q 018486 206 KDIGDERFMDSKSQSSAA-PLKYKDKDVTVIFRRRGGDDL------EQSHAKWAETV-------QLAP-DVINMTFTPIV 270 (355)
Q Consensus 206 ~~~~~~~f~~~~~~s~~~-~~~~~~~~~~vi~~~~GG~~l------~~~~~~W~~SV-------~~~P-~vI~~~l~PI~ 270 (355)
+... .+.+.+.+.+ ..-++ ..++...+.||... ..++.+-.+=+ +.+| .||+|++.-+.
T Consensus 295 ~a~i----~~~~~s~~~e~k~il~--~s~i~v~i~GG~~~~~~k~I~~~~~~l~~~I~~~s~~s~~npg~PIsYt~~flk 368 (500)
T 1pfo_A 295 KALI----KNTDIKNSQQYKDIYE--NSSFTAVVLGGDAQEHNKVVTKDFDEIRKVIKDNATFSTKNPAYPISYTSVFLK 368 (500)
T ss_dssp HHHH----HTCGGGGSHHHHHHHH--TEEEEEEEEETTSCTTCCEEESCHHHHHHHHHHTCEEETTSCCCEEEEEEEETT
T ss_pred HHHh----ccCCcchhHHHHHHHh--cCeEEEEEECCchhhhhhhhcCCHHHHHHHHhcCCccCCCCCCcceEEEEEEec
Confidence 6443 2221111111 11122 23333345677642 13334333333 2334 68999887554
No 28
>1wi8_A EIF-4B, eukaryotic translation initiation factor 4B; RNA recognition motif, RRM, RNA binding domain, RBD, RNP, structural genomics; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=21.71 E-value=43 Score=24.98 Aligned_cols=28 Identities=11% Similarity=0.390 Sum_probs=23.3
Q ss_pred HHhhCCCCCChHHHHHHHhccccEEEEEEEE
Q 018486 150 IRRAVPYSWDPPLLASFIENYGTHIVTSITI 180 (355)
Q Consensus 150 F~~~LP~~yd~~~y~~fIe~YGTHyit~v~l 180 (355)
|...||...+..++.+++..|| |.++.+
T Consensus 19 ~V~nlp~~~t~~~l~~~F~~~G---i~~v~i 46 (104)
T 1wi8_A 19 FLGNLPYDVTEESIKEFFRGLN---ISAVRL 46 (104)
T ss_dssp EEESCCSSCCHHHHHHHTTTSC---EEEEEC
T ss_pred EEeCCCCcCCHHHHHHHHHHCC---ceEEEE
Confidence 3457999899999999999999 667666
No 29
>2cph_A RNA binding motif protein 19; RNA recognition motif, RRM, RNP, structural genomics, NPPSFA; NMR {Mus musculus} SCOP: d.58.7.1
Probab=21.54 E-value=52 Score=24.46 Aligned_cols=29 Identities=10% Similarity=0.492 Sum_probs=22.8
Q ss_pred HHhhCCCCCChHHHHHHHhccccEEEEEEEE
Q 018486 150 IRRAVPYSWDPPLLASFIENYGTHIVTSITI 180 (355)
Q Consensus 150 F~~~LP~~yd~~~y~~fIe~YGTHyit~v~l 180 (355)
|...||...+..++.+++..||. |.++.+
T Consensus 19 ~V~nlp~~~t~~~l~~~F~~~G~--i~~v~i 47 (107)
T 2cph_A 19 LVRNIPFQANQREIRELFSTFGE--LKTVRL 47 (107)
T ss_dssp EEESCCTTCCHHHHHHHHHTTSC--EEEEEC
T ss_pred EEeCCCCcCCHHHHHHHHHccCC--eEEEEE
Confidence 44579999999999999999997 444444
No 30
>2cpf_A RNA binding motif protein 19; RNA recognition motif, RRM, RNP, structural genomics, NPPSFA; NMR {Mus musculus} SCOP: d.58.7.1
Probab=21.33 E-value=62 Score=23.65 Aligned_cols=23 Identities=13% Similarity=0.228 Sum_probs=20.0
Q ss_pred HHhhCCCCCChHHHHHHHhcccc
Q 018486 150 IRRAVPYSWDPPLLASFIENYGT 172 (355)
Q Consensus 150 F~~~LP~~yd~~~y~~fIe~YGT 172 (355)
|...||...+..++.++++.||.
T Consensus 9 ~V~nLp~~~t~~~l~~~F~~~G~ 31 (98)
T 2cpf_A 9 FIKNLNFSTTEETLKGVFSKVGA 31 (98)
T ss_dssp EEESCCTTCCHHHHHHHHHTTSC
T ss_pred EEeCCCCCCCHHHHHHHHHhcCC
Confidence 34579998999999999999997
No 31
>1why_A Hypothetical protein riken cDNA 1810017N16; RNA recognition motif, RRM, RNA binding domain, RBD, RNP, structural genomics; NMR {Mus musculus} SCOP: d.58.7.1
Probab=21.21 E-value=60 Score=23.76 Aligned_cols=23 Identities=13% Similarity=0.104 Sum_probs=20.2
Q ss_pred HHhhCCCCCChHHHHHHHhcccc
Q 018486 150 IRRAVPYSWDPPLLASFIENYGT 172 (355)
Q Consensus 150 F~~~LP~~yd~~~y~~fIe~YGT 172 (355)
|...||...+..++.++++.||.
T Consensus 21 ~V~nlp~~~t~~~l~~~F~~~G~ 43 (97)
T 1why_A 21 WVGGLGPNTSLAALAREFDRFGS 43 (97)
T ss_dssp EEECCCSSCCHHHHHHHHHTTSC
T ss_pred EEeCCCCCCCHHHHHHHHHhcCC
Confidence 44579998999999999999997
No 32
>2dh8_A DAZ-associated protein 1; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=21.09 E-value=68 Score=23.82 Aligned_cols=26 Identities=19% Similarity=0.330 Sum_probs=21.6
Q ss_pred HHHhhCCCCCChHHHHHHHhccccEE
Q 018486 149 EIRRAVPYSWDPPLLASFIENYGTHI 174 (355)
Q Consensus 149 ~F~~~LP~~yd~~~y~~fIe~YGTHy 174 (355)
=|...||...+..++.+++..||.-.
T Consensus 19 l~V~nlp~~~t~~~l~~~F~~~G~v~ 44 (105)
T 2dh8_A 19 LFVGGLDWSTTQETLRSYFSQYGEVV 44 (105)
T ss_dssp ECCBSCCTTCCHHHHHHHHHTTSCEE
T ss_pred EEEeCCCCCCCHHHHHHHHHhcCCeE
Confidence 34557999999999999999999743
No 33
>3nmr_A Cugbp ELAV-like family member 1; RRM, PRE-mRNA splicing, RNA binding protein-RNA complex; 1.85A {Homo sapiens} PDB: 3nna_A 3nnc_A 2dhs_A 3nnh_A
Probab=20.78 E-value=59 Score=26.02 Aligned_cols=28 Identities=32% Similarity=0.623 Sum_probs=22.5
Q ss_pred HhhCCCCCChHHHHHHHhccccEEEEEEEE
Q 018486 151 RRAVPYSWDPPLLASFIENYGTHIVTSITI 180 (355)
Q Consensus 151 ~~~LP~~yd~~~y~~fIe~YGTHyit~v~l 180 (355)
...||...+..++.++++.||. |.++.+
T Consensus 8 V~nLp~~~te~~l~~~F~~~G~--i~~v~i 35 (175)
T 3nmr_A 8 VGQVPRTWSEKDLRELFEQYGA--VYEINV 35 (175)
T ss_dssp EESCCTTCCHHHHHHHHHTTSC--EEEEEE
T ss_pred EeCCCCCCCHHHHHHHHHhCCC--EEEEEE
Confidence 3469999999999999999997 445444
No 34
>2dnm_A SRP46 splicing factor; RRM domain, RBD, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=20.61 E-value=53 Score=24.34 Aligned_cols=29 Identities=28% Similarity=0.432 Sum_probs=23.1
Q ss_pred HHhhCCCCCChHHHHHHHhccccEEEEEEEE
Q 018486 150 IRRAVPYSWDPPLLASFIENYGTHIVTSITI 180 (355)
Q Consensus 150 F~~~LP~~yd~~~y~~fIe~YGTHyit~v~l 180 (355)
|...||...+..++.++++.||. |.++.+
T Consensus 17 ~V~nLp~~~t~~~l~~~f~~~G~--i~~v~i 45 (103)
T 2dnm_A 17 KVDNLTYRTSPDSLRRVFEKYGR--VGDVYI 45 (103)
T ss_dssp EEESCCTTCCHHHHHHHHTTTSC--EEEEEC
T ss_pred EEeCCCCCCCHHHHHHHHHhcCC--EEEEEE
Confidence 34579999999999999999997 445544
No 35
>1wf0_A TDP-43, TAR DNA-binding protein-43; structural genomics, RRM domain, riken structural genomics/proteomics initiative RSGI, RNA binding protein; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=20.57 E-value=28 Score=25.16 Aligned_cols=29 Identities=21% Similarity=0.279 Sum_probs=22.9
Q ss_pred HHhhCCCCCChHHHHHHHhccccEEEEEEEE
Q 018486 150 IRRAVPYSWDPPLLASFIENYGTHIVTSITI 180 (355)
Q Consensus 150 F~~~LP~~yd~~~y~~fIe~YGTHyit~v~l 180 (355)
|...||...+..++.+++..||+ |.++.+
T Consensus 9 ~V~nLp~~~te~~l~~~F~~~G~--i~~v~i 37 (88)
T 1wf0_A 9 FVGRCTGDMTEDELREFFSQYGD--VMDVFI 37 (88)
T ss_dssp EEESCCSSSCHHHHHHHSTTTSC--CCEEEC
T ss_pred EEeCCCCCCCHHHHHHHHHHcCC--eeEEEE
Confidence 34579999999999999999997 444444
No 36
>3d2w_A TAR DNA-binding protein 43; DP-43 proteinopathy, TDP-43 inclusions, RNA recognition MOTI U, ALS, RRM; HET: DNA; 1.65A {Mus musculus}
Probab=20.47 E-value=55 Score=23.98 Aligned_cols=29 Identities=21% Similarity=0.279 Sum_probs=23.4
Q ss_pred HHhhCCCCCChHHHHHHHhccccEEEEEEEE
Q 018486 150 IRRAVPYSWDPPLLASFIENYGTHIVTSITI 180 (355)
Q Consensus 150 F~~~LP~~yd~~~y~~fIe~YGTHyit~v~l 180 (355)
|...||...+..++.++++.||+ |+++.+
T Consensus 15 ~V~~Lp~~~te~~L~~~F~~~G~--i~~v~i 43 (89)
T 3d2w_A 15 FVGRCTEDMTAEELQQFFCQYGE--VVDVFI 43 (89)
T ss_dssp EEESCCTTCCHHHHHHHHTTTSC--EEEEEC
T ss_pred EEeCCCCCCCHHHHHHHHhccCC--EEEEEE
Confidence 44579999999999999999998 555555
No 37
>2dgu_A Heterogeneous nuclear ribonucleoprotein Q; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} PDB: 2dk2_A
Probab=20.23 E-value=57 Score=24.28 Aligned_cols=50 Identities=8% Similarity=0.112 Sum_probs=31.7
Q ss_pred HHhhCCCCCChHHHHHHHhccccEEEEEEEE-ccEEEEEEeecccCCCCHHHHHHHHHhh
Q 018486 150 IRRAVPYSWDPPLLASFIENYGTHIVTSITI-GGRDVVYIRQHQSSPLSMMDIENYVKDI 208 (355)
Q Consensus 150 F~~~LP~~yd~~~y~~fIe~YGTHyit~v~l-GGk~v~~v~~~~ss~ls~~evk~cl~~~ 208 (355)
|...||...+..++.++++.||.-. ++.+ -|. -+|.- .+.++.++++...
T Consensus 15 ~V~nl~~~~t~~~l~~~F~~~G~i~--~v~~~~~~--afV~f-----~~~~~a~~A~~~l 65 (103)
T 2dgu_A 15 FVRNLANTVTEEILEKAFSQFGKLE--RVKKLKDY--AFIHF-----DERDGAVKAMEEM 65 (103)
T ss_dssp EEECCCTTCCHHHHHHHHHHHSCEE--EEEECSSC--EEEEE-----SSHHHHHHHHHHH
T ss_pred EEeCCCCCCCHHHHHHHHHhcCCEE--EEEEECCE--EEEEe-----CCHHHHHHHHHHH
Confidence 4457999999999999999999733 3333 222 11111 2456777777643
No 38
>2khc_A Testis-specific RNP-type RNA binding protein; RRM, RNA recognition motif, bruno; NMR {Drosophila melanogaster}
Probab=20.23 E-value=54 Score=24.99 Aligned_cols=29 Identities=24% Similarity=0.303 Sum_probs=22.5
Q ss_pred HHhhCCCCCChHHHHHHHhccccEEEEEEEE
Q 018486 150 IRRAVPYSWDPPLLASFIENYGTHIVTSITI 180 (355)
Q Consensus 150 F~~~LP~~yd~~~y~~fIe~YGTHyit~v~l 180 (355)
|...||...+..++.++++.||+ |.++.+
T Consensus 44 ~V~nlp~~~t~~~l~~~F~~~G~--i~~~~i 72 (118)
T 2khc_A 44 FIYHLPQEFTDTDLASTFLPFGN--VISAKV 72 (118)
T ss_dssp EEECSCTTCCHHHHHHHTTTSCE--EEEEEE
T ss_pred EEeCCCCCCCHHHHHHHHHhcCC--EEEEEE
Confidence 34578988999999999999997 444444
No 39
>2ywk_A Putative RNA-binding protein 11; RRM-domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; 1.54A {Homo sapiens}
Probab=20.21 E-value=69 Score=23.15 Aligned_cols=22 Identities=9% Similarity=0.031 Sum_probs=19.4
Q ss_pred HhhCCCCCChHHHHHHHhcccc
Q 018486 151 RRAVPYSWDPPLLASFIENYGT 172 (355)
Q Consensus 151 ~~~LP~~yd~~~y~~fIe~YGT 172 (355)
...||...+..++.+++..||.
T Consensus 21 v~nlp~~~~~~~l~~~F~~~G~ 42 (95)
T 2ywk_A 21 VGNLEARVREEILYELFLQAGP 42 (95)
T ss_dssp EECCCTTCCHHHHHHHHGGGSC
T ss_pred EECCCCCCCHHHHHHHHHhcCC
Confidence 3469998999999999999996
No 40
>2cqc_A Arginine/serine-rich splicing factor 10; RNA recognition motif, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=20.19 E-value=67 Score=23.19 Aligned_cols=28 Identities=14% Similarity=0.236 Sum_probs=22.4
Q ss_pred HhhCCCCCChHHHHHHHhccccEEEEEEEE
Q 018486 151 RRAVPYSWDPPLLASFIENYGTHIVTSITI 180 (355)
Q Consensus 151 ~~~LP~~yd~~~y~~fIe~YGTHyit~v~l 180 (355)
...||...+..++.++++.||. |.++.+
T Consensus 20 v~nlp~~~t~~~l~~~f~~~G~--v~~v~i 47 (95)
T 2cqc_A 20 VFGLSLYTTERDLREVFSKYGP--IADVSI 47 (95)
T ss_dssp EESCCSSCCHHHHHHHHHTTSC--EEEEEE
T ss_pred EECCCCCCCHHHHHHHHHhcCC--eeEEEE
Confidence 3479999999999999999997 444444
Done!