BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 018488
(355 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|2BRT|A Chain A, Anthocyanidin Synthase From Arabidopsis Thaliana Complexed
With Naringenin
Length = 355
Score = 152 bits (384), Expect = 3e-37, Method: Compositional matrix adjust.
Identities = 95/315 (30%), Positives = 149/315 (47%), Gaps = 20/315 (6%)
Query: 24 ITGLVDSGIQKVPERYILPPQQRFDLTKVVSQDS------ILIIDVSNWD-DPEVIKSIC 76
+ L SGI +P+ YI P ++ + V ++ + ID+ N + D E I+ C
Sbjct: 6 VESLAKSGIISIPKEYIRPKEELESINDVFLEEKKEDGPQVPTIDLKNIESDDEKIRENC 65
Query: 77 -----EASGKWGFFQIINHGIPLQVLENITDAAHSFFGLPNEQRSKYYKGASPSETVFLA 131
+AS WG +INHGIP ++E + A FF L E++ KY + +
Sbjct: 66 IEELKKASLDWGVMHLINHGIPADLMERVKKAGEEFFSLSVEEKEKYANDQATGKIQGYG 125
Query: 132 TSFSPQAEVALEWRDYLSFQYIPGNDQASALWPPVCKDEVLEYMKKAEIVIXXXXXXXXX 191
+ + A LEW DY P + ++WP D + + A+ +
Sbjct: 126 SKLANNASGQLEWEDYFFHLAYPEEKRDLSIWPKTPSDYIEATSEYAKCLRLLATKVFKA 185
Query: 192 XXXXXDFDRDTQHTLMGS-----PRIYLNYYPKCPNPELTAGVGPHSDISTITVLLQDDI 246
+ D +G ++ +NYYPKCP PEL GV H+D+S +T +L + +
Sbjct: 186 LSVGLGLEPDRLEKEVGGLEELLLQMKINYYPKCPQPELALGVEAHTDVSALTFILHNMV 245
Query: 247 GGLYVRGIEDDTWIHVPPIKGALVINIGDVLQIISNDKYKSIEHRVVANKIKNRVSVPIF 306
GL + + W+ + ++V++IGD L+I+SN KYKSI HR + NK K R+S +F
Sbjct: 246 PGLQL--FYEGKWVTAKCVPDSIVMHIGDTLEILSNGKYKSILHRGLVNKEKVRISWAVF 303
Query: 307 VNPAPDA-VFGPLPE 320
P D V PLPE
Sbjct: 304 CEPPKDKIVLKPLPE 318
>pdb|1GP5|A Chain A, Anthocyanidin Synthase From Arabidopsis Thaliana Complexed
With Trans-Dihydroquercetin
pdb|1GP6|A Chain A, Anthocyanidin Synthase From Arabidopsis Thaliana Complexed
With Trans-Dihydroquercetin (With 30 Min Exposure To O2)
Length = 356
Score = 152 bits (384), Expect = 3e-37, Method: Compositional matrix adjust.
Identities = 95/315 (30%), Positives = 149/315 (47%), Gaps = 20/315 (6%)
Query: 24 ITGLVDSGIQKVPERYILPPQQRFDLTKVVSQDS------ILIIDVSNWD-DPEVIKSIC 76
+ L SGI +P+ YI P ++ + V ++ + ID+ N + D E I+ C
Sbjct: 7 VESLAKSGIISIPKEYIRPKEELESINDVFLEEKKEDGPQVPTIDLKNIESDDEKIRENC 66
Query: 77 -----EASGKWGFFQIINHGIPLQVLENITDAAHSFFGLPNEQRSKYYKGASPSETVFLA 131
+AS WG +INHGIP ++E + A FF L E++ KY + +
Sbjct: 67 IEELKKASLDWGVMHLINHGIPADLMERVKKAGEEFFSLSVEEKEKYANDQATGKIQGYG 126
Query: 132 TSFSPQAEVALEWRDYLSFQYIPGNDQASALWPPVCKDEVLEYMKKAEIVIXXXXXXXXX 191
+ + A LEW DY P + ++WP D + + A+ +
Sbjct: 127 SKLANNASGQLEWEDYFFHLAYPEEKRDLSIWPKTPSDYIEATSEYAKCLRLLATKVFKA 186
Query: 192 XXXXXDFDRDTQHTLMGS-----PRIYLNYYPKCPNPELTAGVGPHSDISTITVLLQDDI 246
+ D +G ++ +NYYPKCP PEL GV H+D+S +T +L + +
Sbjct: 187 LSVGLGLEPDRLEKEVGGLEELLLQMKINYYPKCPQPELALGVEAHTDVSALTFILHNMV 246
Query: 247 GGLYVRGIEDDTWIHVPPIKGALVINIGDVLQIISNDKYKSIEHRVVANKIKNRVSVPIF 306
GL + + W+ + ++V++IGD L+I+SN KYKSI HR + NK K R+S +F
Sbjct: 247 PGLQL--FYEGKWVTAKCVPDSIVMHIGDTLEILSNGKYKSILHRGLVNKEKVRISWAVF 304
Query: 307 VNPAPDA-VFGPLPE 320
P D V PLPE
Sbjct: 305 CEPPKDKIVLKPLPE 319
>pdb|1GP4|A Chain A, Anthocyanidin Synthase From Arabidopsis Thaliana
(Selenomethionine Substituted)
Length = 356
Score = 149 bits (376), Expect = 2e-36, Method: Compositional matrix adjust.
Identities = 96/315 (30%), Positives = 145/315 (46%), Gaps = 20/315 (6%)
Query: 24 ITGLVDSGIQKVPERYILPPQQRFDLTKVVSQDS------ILIIDVSNWD-DPEVIKSIC 76
+ L SGI +P+ YI P ++ + V ++ + ID+ N + D E I+ C
Sbjct: 7 VESLAKSGIISIPKEYIRPKEELESINDVFLEEKKEDGPQVPTIDLKNIESDDEKIRENC 66
Query: 77 -----EASGKWGFFQIINHGIPLQVLENITDAAHSFFGLPNEQRSKYYKGASPSETVFLA 131
+AS WG +INHGIP + E + A FF L E++ KY + +
Sbjct: 67 IEELKKASLDWGVXHLINHGIPADLXERVKKAGEEFFSLSVEEKEKYANDQATGKIQGYG 126
Query: 132 TSFSPQAEVALEWRDYLSFQYIPGNDQASALWPPVCKDEVLEYMKKAEIVIXXXXXXXXX 191
+ + A LEW DY P + ++WP D + + A+ +
Sbjct: 127 SKLANNASGQLEWEDYFFHLAYPEEKRDLSIWPKTPSDYIEATSEYAKCLRLLATKVFKA 186
Query: 192 XXXXXDFDRDTQHTLMGSPRIYL-----NYYPKCPNPELTAGVGPHSDISTITVLLQDDI 246
+ D +G L NYYPKCP PEL GV H+D+S +T +L + +
Sbjct: 187 LSVGLGLEPDRLEKEVGGLEELLLQXKINYYPKCPQPELALGVEAHTDVSALTFILHNXV 246
Query: 247 GGLYVRGIEDDTWIHVPPIKGALVINIGDVLQIISNDKYKSIEHRVVANKIKNRVSVPIF 306
GL + + W+ + ++V +IGD L+I+SN KYKSI HR + NK K R+S +F
Sbjct: 247 PGLQL--FYEGKWVTAKCVPDSIVXHIGDTLEILSNGKYKSILHRGLVNKEKVRISWAVF 304
Query: 307 VNPAPDA-VFGPLPE 320
P D V PLPE
Sbjct: 305 CEPPKDKIVLKPLPE 319
>pdb|1W9Y|A Chain A, The Structure Of Acc Oxidase
pdb|1WA6|X Chain X, The Structure Of Acc Oxidase
Length = 319
Score = 127 bits (318), Expect = 1e-29, Method: Compositional matrix adjust.
Identities = 90/287 (31%), Positives = 135/287 (47%), Gaps = 36/287 (12%)
Query: 70 EVIKSICEASGKWGFFQIINHGIPLQVLENITDAAHSFFGLPNEQRSKYYKGASPSETVF 129
E IK CE WGFF+++NHGIP +V + + + EQR K + E V
Sbjct: 22 EXIKDACE---NWGFFELVNHGIPREVXDTVEKXTKGHYKKCXEQRFKELVASKALEGV- 77
Query: 130 LATSFSPQAEVA-LEWRDYLSFQYIPGNDQASA-----LWPPVCKDEVLEYMKKAEIVIX 183
QAEV +W +++P ++ + + V +D K AE ++
Sbjct: 78 -------QAEVTDXDWESTFFLKHLPISNISEVPDLDEEYREVXRDFAKRLEKLAEELLD 130
Query: 184 XXXXXXXXXXXXXDFDRDTQHTLMGSPR----IYLNYYPKCPNPELTAGVGPHSDISTIT 239
++ GS ++ YP CP P+L G+ H+D I
Sbjct: 131 LLCENLGLEKGY------LKNAFYGSKGPNFGTKVSNYPPCPKPDLIKGLRAHTDAGGII 184
Query: 240 VLLQDD-IGGLYVRGIEDDTWIHVPPIKGALVINIGDVLQIISNDKYKSIEHRVVANKIK 298
+L QDD + GL + ++D WI VPP + ++V+N+GD L++I+N KYKS+ HRV+A K
Sbjct: 185 LLFQDDKVSGLQL--LKDGQWIDVPPXRHSIVVNLGDQLEVITNGKYKSVXHRVIAQKDG 242
Query: 299 NRVSVPIFVNPAPDAVFGPLP-----ESGE-IPIYKQLVFSDYFNFY 339
R S+ F NP DAV P P E+ E +Y + VF DY Y
Sbjct: 243 ARXSLASFYNPGSDAVIYPAPALVEKEAEENKQVYPKFVFDDYXKLY 289
>pdb|3ON7|A Chain A, Crystal Structure Of A Putative Oxygenase (So_2589) From
Shewanella Oneidensis At 2.20 A Resolution
pdb|3ON7|B Chain B, Crystal Structure Of A Putative Oxygenase (So_2589) From
Shewanella Oneidensis At 2.20 A Resolution
pdb|3ON7|C Chain C, Crystal Structure Of A Putative Oxygenase (So_2589) From
Shewanella Oneidensis At 2.20 A Resolution
pdb|3ON7|D Chain D, Crystal Structure Of A Putative Oxygenase (So_2589) From
Shewanella Oneidensis At 2.20 A Resolution
Length = 280
Score = 67.4 bits (163), Expect = 1e-11, Method: Compositional matrix adjust.
Identities = 41/107 (38%), Positives = 61/107 (57%), Gaps = 6/107 (5%)
Query: 214 LNYYPKCPNPELTA-GVGPHSDISTITVLLQDDIGGLYVRGIEDDTWIHVPPIKGALVIN 272
L+Y P + E A H DI+ ITVL + GL V+ +D +W+ VP G ++IN
Sbjct: 155 LHYPPXTGDEEXGAIRAAAHEDINLITVLPTANEPGLQVKA-KDGSWLDVPSDFGNIIIN 213
Query: 273 IGDVLQIISNDKYKSIEHRVV----ANKIKNRVSVPIFVNPAPDAVF 315
IGD LQ S+ + S HRV+ +K K+R+S+P+F++P P V
Sbjct: 214 IGDXLQEASDGYFPSTSHRVINPEGTDKTKSRISLPLFLHPHPSVVL 260
>pdb|3OOX|A Chain A, Crystal Structure Of A Putative 2og-Fe(Ii) Oxygenase
Family Protein (Cc_0200) From Caulobacter Crescentus At
1.44 A Resolution
pdb|3OOX|B Chain B, Crystal Structure Of A Putative 2og-Fe(Ii) Oxygenase
Family Protein (Cc_0200) From Caulobacter Crescentus At
1.44 A Resolution
Length = 312
Score = 67.0 bits (162), Expect = 2e-11, Method: Compositional matrix adjust.
Identities = 67/239 (28%), Positives = 100/239 (41%), Gaps = 14/239 (5%)
Query: 81 KWGFFQIINHGIPLQVLENITDAAHSFFGLPNEQRSKY--YKGASPSETVFLATSFSPQA 138
++GF + ++ + ++ D+A +FF LP E + +Y KG + F +
Sbjct: 32 RYGFAVLSDYDLDQARIDAAVDSAKAFFALPVETKKQYAGVKGGARGYIPFGVETAKGAD 91
Query: 139 EVALEWRDYLSFQYIPGN----DQASALWP---PVCKDEV-LEYMKKAEIVIXXXXXXXX 190
L+ + PG+ A +WP P K +V Y
Sbjct: 92 HYDLKEFWHXGRDLPPGHRFRAHXADNVWPAEIPAFKHDVSWLYNSLDGXGGKVLEAIAT 151
Query: 191 XXXXXXDFDRDTQHTLMGSPRIYLNYYPKCPNPELTAGVGPHSDISTITVLLQDDIGGLY 250
DF + T G+ + L +YP P G H DI+TIT+LL + GGL
Sbjct: 152 YLKLERDFFKPTVQD--GNSVLRLLHYPPIPKDATGVRAGAHGDINTITLLLGAEEGGLE 209
Query: 251 VRGIEDDTWIHVPPIKGALVINIGDVLQIISNDKYKSIEHRVVANKIKNRVSVPIFVNP 309
V D W+ + P G LVINIGD L+ ++N+ S HRVV N R VP + P
Sbjct: 210 VLD-RDGQWLPINPPPGCLVINIGDXLERLTNNVLPSTVHRVV-NPPPERRGVPRYSTP 266
>pdb|2BJS|A Chain A, Isopenicillin N Synthase C-Terminal Truncation Mutant
Length = 325
Score = 43.5 bits (101), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 69/278 (24%), Positives = 106/278 (38%), Gaps = 36/278 (12%)
Query: 70 EVIKSICEASGKWGFFQIINHGIPLQVLENITDAAHSFFGLPNEQRSKYYKGASPS--ET 127
V + I AS GFF +NHGI +Q L T H P E+ + + +
Sbjct: 27 RVAQQIDAASRDTGFFYAVNHGINVQRLSQKTKEFHMSI-TPEEKWDLAIRAYNKEHQDQ 85
Query: 128 VFLATSFSPQAEVALEWRDYLSFQYIPGNDQASA--------LWP-----PVCKDEVLEY 174
V S + A+E YL+ + P + + A +WP P +D +Y
Sbjct: 86 VRAGYYLSIPGKKAVESFCYLNPNFTPDHPRIQAKTPTHEVNVWPDETKHPGFQDFAEQY 145
Query: 175 ------MKKAEIVIXXXXXXXXXXXXXXDFD-RDTQHTLMGSPRIYLNYYPKCPNPELTA 227
+ A + F DT +++ YL+ YP+
Sbjct: 146 YWDVFGLSSALLKGYALALGKEENFFARHFKPDDTLASVVLIRYPYLDPYPEAAIKTAAD 205
Query: 228 GVGP----HSDISTITVLLQDDIGGLYVR---GIEDDTWIHVPPIKGALVINIGDVLQII 280
G H D+S ITVL Q ++ L V G +D + +IN G + +
Sbjct: 206 GTKLSFEWHEDVSLITVLYQSNVQNLQVETAAGYQD-----IEADDTGYLINCGSYMAHL 260
Query: 281 SNDKYKSIEHRVVANKIKNRVSVPIFVNPAPDAVFGPL 318
+N+ YK+ HRV + R S+P FVN D+V P
Sbjct: 261 TNNYYKAPIHRVKWVNAE-RQSLPFFVNLGYDSVIDPF 297
>pdb|1IPS|A Chain A, Isopenicillin N Synthase From Aspergillus Nidulans
(Manganese Complex)
pdb|1IPS|B Chain B, Isopenicillin N Synthase From Aspergillus Nidulans
(Manganese Complex)
pdb|1QJE|A Chain A, Isopenicillin N Synthase From Aspergillus Nidulans (Ip1 -
Fe Complex)
pdb|1QJF|A Chain A, Isopenicillin N Synthase From Aspergillus Nidulans
(Monocyclic Sulfoxide - Fe Complex)
pdb|1QIQ|A Chain A, Isopenicillin N Synthase From Aspergillus Nidulans (Acmc
Fe Complex)
pdb|1HB4|A Chain A, Isopenicillin N Synthase From Aspergillus Nidulans (Oxygen
Exposed Product From Anaerobic Acov Fe Complex)
pdb|1HB3|A Chain A, Isopenicillin N Synthase From Aspergillus Nidulans (Oxygen
Exposed Product From Anaerobic Acov Fe Complex)
pdb|1HB2|A Chain A, Isopenicillin N Synthase From Aspergillus Nidulans (Oxygen
Exposed Product From Anaerobic Acov Fe Complex)
pdb|1HB1|A Chain A, Isopenicillin N Synthase From Aspergillus Nidulans
(Anaerobic Acov Fe Complex)
pdb|1ODM|A Chain A, Isopenicillin N Synthase From Aspergillus Nidulans
(anaerobic Ac-vinylglycine Fe Complex)
pdb|1ODN|A Chain A, Isopenicillin N Synthase From Aspergillus Nidulans
(Oxygen-Exposed Product From Anaerobic Ac-Vinylglycine
Fe Complex)
pdb|1OBN|A Chain A, Isopenicillin N Synthase
Aminoadipoyl-cysteinyl-aminobutyrate-fe-no Complex
pdb|1OC1|A Chain A, Isopenicillin N Synthase
Aminoadipoyl-cysteinyl-aminobutyrate-fe Complex
pdb|1UZW|A Chain A, Isopenicillin N Synthase With
L-D-(A-Aminoadipoyl)-L-Cysteinyl-D-Isodehydrovaline
pdb|1W03|A Chain A, Isopenicillin N Synthase Aminoadipoyl-Cysteinyl-Glycine-Fe
Complex
pdb|1W04|A Chain A, Isopenicillin N Synthase
Aminoadipoyl-Cysteinyl-Glycine-Fe-No Complex
pdb|1W05|A Chain A, Isopenicillin N Synthase Aminoadipoyl-Cysteinyl-Alanine-Fe
Complex
pdb|1W06|A Chain A, Isopenicillin N Synthase Aminoadipoyl-Cysteinyl-Alanine-Fe
No Complex
pdb|2BU9|A Chain A, Isopenicillin N Synthase Complexed With L-Aminoadipoyl-L-
Cysteinyl-L-Hexafluorovaline
pdb|1W3V|A Chain A, Isopenicillin N Synthase
D-(L-A-Aminoadipoyl)-(3r)-Methyl-L- Cysteine
D-A-Hydroxyisovaleryl Ester Complex (Anaerobic)
pdb|1W3X|A Chain A, Isopenicillin N Synthase
D-(L-A-Aminoadipoyl)-(3r)-Methyl-L- Cysteine
D-A-Hydroxyisovaleryl Ester Complex (Oxygen Exposed 5
Minutes 20 Bar)
pdb|2IVI|B Chain B, Isopenicillin N Synthase From Aspergillus Nidulans
(anaerobic Ac-methyl-cyclopropylglycine Fe Complex)
pdb|2IVJ|A Chain A, Isopenicillin N Synthase From Aspergillus Nidulans
(Anaerobic Ac-Cyclopropylglycine Fe Complex)
pdb|1BK0|A Chain A, Isopenicillin N Synthase From Aspergillus Nidulans (Acv-Fe
Complex)
pdb|1BLZ|A Chain A, Isopenicillin N Synthase From Aspergillus Nidulans
(Acv-Fe- No Complex)
pdb|2JB4|A Chain A, Isopenicillin N Synthase With A 2-Thiabicycloheptan-6-One
Product Analogue
pdb|2VAU|A Chain A, Isopenicillin N Synthase With Substrate Analogue Acomp (
Unexposed)
pdb|2VBB|A Chain A, Isopenicillin N Synthase With Substrate Analogue Acomp (
35minutes Oxygen Exposure)
pdb|2VBD|A Chain A, Isopenicillin N Synthase With Substrate Analogue L,l,l-
Acomp (unexposed)
pdb|2VBP|A Chain A, Isopenicillin N Synthase With Substrate Analogue
L,L,L-Acab (Unexposed)
pdb|2VCM|A Chain A, Isopenicillin N Synthase With Substrate Analogue Asmcov
pdb|2VE1|A Chain A, Isopenicillin N Synthase With Substrate Analogue Asmcov (
Oxygen Exposed 1min 20bar)
pdb|2WO7|A Chain A, Isopenicillin N Synthase With Substrate Analogue L,L,D-
Acd2ab (Unexposed)
pdb|2Y6F|A Chain A, Isopenicillin N Synthase With
Ac-D-S-Methyl-3r-Methylcysteine
pdb|2Y60|A Chain A, Isopenicillin N Synthase With Ac-D-Methionine
pdb|2Y86|A Chain A, Isopenicillin N Synthase With Ac-O-Methyl-D-Threonine
pdb|3ZKU|A Chain A, Isopenicillin N Synthase With Substrate Analogue Ahcv
Length = 331
Score = 43.1 bits (100), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 69/278 (24%), Positives = 106/278 (38%), Gaps = 36/278 (12%)
Query: 70 EVIKSICEASGKWGFFQIINHGIPLQVLENITDAAHSFFGLPNEQRSKYYKGASPS--ET 127
V + I AS GFF +NHGI +Q L T H P E+ + + +
Sbjct: 27 RVAQQIDAASRDTGFFYAVNHGINVQRLSQKTKEFHMSI-TPEEKWDLAIRAYNKEHQDQ 85
Query: 128 VFLATSFSPQAEVALEWRDYLSFQYIPGNDQASA--------LWP-----PVCKDEVLEY 174
V S + A+E YL+ + P + + A +WP P +D +Y
Sbjct: 86 VRAGYYLSIPGKKAVESFCYLNPNFTPDHPRIQAKTPTHEVNVWPDETKHPGFQDFAEQY 145
Query: 175 ------MKKAEIVIXXXXXXXXXXXXXXDFD-RDTQHTLMGSPRIYLNYYPKCPNPELTA 227
+ A + F DT +++ YL+ YP+
Sbjct: 146 YWDVFGLSSALLKGYALALGKEENFFARHFKPDDTLASVVLIRYPYLDPYPEAAIKTAAD 205
Query: 228 GVGP----HSDISTITVLLQDDIGGLYVR---GIEDDTWIHVPPIKGALVINIGDVLQII 280
G H D+S ITVL Q ++ L V G +D + +IN G + +
Sbjct: 206 GTKLSFEWHEDVSLITVLYQSNVQNLQVETAAGYQD-----IEADDTGYLINCGSYMAHL 260
Query: 281 SNDKYKSIEHRVVANKIKNRVSVPIFVNPAPDAVFGPL 318
+N+ YK+ HRV + R S+P FVN D+V P
Sbjct: 261 TNNYYKAPIHRVKWVNAE-RQSLPFFVNLGYDSVIDPF 297
>pdb|1STZ|A Chain A, Crystal Structure Of A Hypothetical Protein At 2.2 A
Resolution
pdb|1STZ|B Chain B, Crystal Structure Of A Hypothetical Protein At 2.2 A
Resolution
pdb|1STZ|C Chain C, Crystal Structure Of A Hypothetical Protein At 2.2 A
Resolution
Length = 338
Score = 32.3 bits (72), Expect = 0.42, Method: Compositional matrix adjust.
Identities = 32/135 (23%), Positives = 61/135 (45%), Gaps = 23/135 (17%)
Query: 20 RGNGITGLVDSGIQKVPERYILPPQQRFDLTKVVSQDSILIIDVSNWDDPEVIKSICEAS 79
+G+G L++S I + ERY+ L ++ +++ + D+ N + E
Sbjct: 212 KGSGFLRLIESLIGETVERYLDA-----GLENLLKDETLTLEDIRN---------LLEEV 257
Query: 80 GKWGFFQ-IINHGIPLQVLENITDAAHSFFGLPNEQRSKYYKGASPSETVFLATSFSPQA 138
F + ++ GI +++ I F + + KY+KG SP +V+L TS
Sbjct: 258 KDQKFLESLVGEGITVRIGREIGRKKLEKFAVFS---GKYFKGESPIGSVYLFTS----- 309
Query: 139 EVALEWRDYLSFQYI 153
+V R++ F+YI
Sbjct: 310 KVTKYDRNHRVFEYI 324
>pdb|1ESJ|A Chain A, Crystal Structure Of Thiazole Kinase Mutant (C198s)
pdb|1ESJ|B Chain B, Crystal Structure Of Thiazole Kinase Mutant (C198s)
pdb|1ESJ|C Chain C, Crystal Structure Of Thiazole Kinase Mutant (C198s)
pdb|1ESQ|A Chain A, Crystal Structure Of Thiazole Kinase Mutant (C198s) With
Atp And Thiazole Phosphate.
pdb|1ESQ|B Chain B, Crystal Structure Of Thiazole Kinase Mutant (C198s) With
Atp And Thiazole Phosphate.
pdb|1ESQ|C Chain C, Crystal Structure Of Thiazole Kinase Mutant (C198s) With
Atp And Thiazole Phosphate
Length = 284
Score = 30.8 bits (68), Expect = 1.1, Method: Compositional matrix adjust.
Identities = 16/48 (33%), Positives = 26/48 (54%), Gaps = 7/48 (14%)
Query: 262 VPPIKGALVINIGDVLQIISNDKYKSIEHRVVANKIKNRVSVPIFVNP 309
+ I GALV+NIG + +S+E ++A K N VP+ ++P
Sbjct: 67 MAKIAGALVLNIGTL-------SKESVEAMIIAGKSANEHGVPVILDP 107
>pdb|1C3Q|A Chain A, Crystal Structure Of Native Thiazole Kinase In The
Monoclinic Form
pdb|1C3Q|B Chain B, Crystal Structure Of Native Thiazole Kinase In The
Monoclinic Form
pdb|1C3Q|C Chain C, Crystal Structure Of Native Thiazole Kinase In The
Monoclinic Form
Length = 284
Score = 30.8 bits (68), Expect = 1.1, Method: Compositional matrix adjust.
Identities = 16/48 (33%), Positives = 26/48 (54%), Gaps = 7/48 (14%)
Query: 262 VPPIKGALVINIGDVLQIISNDKYKSIEHRVVANKIKNRVSVPIFVNP 309
+ I GALV+NIG + +S+E ++A K N VP+ ++P
Sbjct: 67 MAKIAGALVLNIGTL-------SKESVEAMIIAGKSANEHGVPVILDP 107
>pdb|1EKK|A Chain A, Crystal Structure Of Hydroxyethylthiazole Kinase In The R3
Form With Hydroxyethylthiazole
pdb|1EKK|B Chain B, Crystal Structure Of Hydroxyethylthiazole Kinase In The R3
Form With Hydroxyethylthiazole
pdb|1EKQ|A Chain A, Crystal Structure Of Hydroxyethylthiazole Kinase In R3
Space Group
pdb|1EKQ|B Chain B, Crystal Structure Of Hydroxyethylthiazole Kinase In R3
Space Group
Length = 272
Score = 30.8 bits (68), Expect = 1.2, Method: Compositional matrix adjust.
Identities = 16/48 (33%), Positives = 26/48 (54%), Gaps = 7/48 (14%)
Query: 262 VPPIKGALVINIGDVLQIISNDKYKSIEHRVVANKIKNRVSVPIFVNP 309
+ I GALV+NIG + +S+E ++A K N VP+ ++P
Sbjct: 55 MAKIAGALVLNIGTL-------SKESVEAMIIAGKSANEHGVPVILDP 95
>pdb|3LLF|A Chain A, Crystal Structure Of The Mutant S127p Of Orotidine
5'-Monoph Decarboxylase From Methanobacterium
Thermoautotrophicum Com With 6-Azauridine
5'-Monophosphate
pdb|3LLF|B Chain B, Crystal Structure Of The Mutant S127p Of Orotidine
5'-Monoph Decarboxylase From Methanobacterium
Thermoautotrophicum Com With 6-Azauridine
5'-Monophosphate
Length = 228
Score = 30.0 bits (66), Expect = 1.9, Method: Compositional matrix adjust.
Identities = 21/73 (28%), Positives = 30/73 (41%), Gaps = 8/73 (10%)
Query: 59 LIIDVSNWDDPEVIKSICEASGKWGFFQIINHGIP--------LQVLENITDAAHSFFGL 110
+I D D PE + IC A+ K G II HG P L V E + +
Sbjct: 67 IIADFKVADIPETNEKICRATFKAGADAIIVHGFPGADSVRACLNVAEEMGREVFLLTEM 126
Query: 111 PNEQRSKYYKGAS 123
P+ + +GA+
Sbjct: 127 PHPGAEMFIQGAA 139
>pdb|1KM4|A Chain A, Crystal Structure Of Odcase Mutant K72a Complexed With Ump
Length = 247
Score = 29.6 bits (65), Expect = 2.6, Method: Compositional matrix adjust.
Identities = 15/35 (42%), Positives = 19/35 (54%)
Query: 59 LIIDVSNWDDPEVIKSICEASGKWGFFQIINHGIP 93
+I D + D PE + IC A+ K G II HG P
Sbjct: 67 IIADFAVADIPETNEKICRATFKAGADAIIVHGFP 101
>pdb|2ZZ2|A Chain A, Orotidine Monophosphate Decarboxylase K72a Mutant From M.
Thermoautotrophicum Complexed With 6-Cyano-Ump
pdb|2ZZ2|B Chain B, Orotidine Monophosphate Decarboxylase K72a Mutant From M.
Thermoautotrophicum Complexed With 6-Cyano-Ump
pdb|2ZZ7|A Chain A, Orotidine Monophosphate Decarboxylase K72a Mutant
Complexed With Bmp (Produced From 6-Iodo-Ump)
Length = 252
Score = 29.6 bits (65), Expect = 3.0, Method: Compositional matrix adjust.
Identities = 15/35 (42%), Positives = 19/35 (54%)
Query: 59 LIIDVSNWDDPEVIKSICEASGKWGFFQIINHGIP 93
+I D + D PE + IC A+ K G II HG P
Sbjct: 70 IIADFAVADIPETNEKICRATFKAGADAIIVHGFP 104
>pdb|3RLU|A Chain A, Crystal Structure Of The Mutant K82a Of Orotidine
5'-Monophosphate Decarboxylase From Methanobacterium
Thermoautotrophicum Complexed With The Inhibitor Bmp
pdb|3RLU|B Chain B, Crystal Structure Of The Mutant K82a Of Orotidine
5'-Monophosphate Decarboxylase From Methanobacterium
Thermoautotrophicum Complexed With The Inhibitor Bmp
Length = 228
Score = 29.3 bits (64), Expect = 3.1, Method: Compositional matrix adjust.
Identities = 15/35 (42%), Positives = 19/35 (54%)
Query: 59 LIIDVSNWDDPEVIKSICEASGKWGFFQIINHGIP 93
+I D D PE ++IC A+ K G II HG P
Sbjct: 67 IIADFKVADIPETNEAICRATFKAGADAIIVHGFP 101
>pdb|3NQ7|A Chain A, Crystal Structure Of The Mutant F71a Of Orotidine
5'-Monophosphate Decarboxylase From Methanobacterium
Thermoautotrophicum Complexed With Inhibitor Bmp
pdb|3NQ7|B Chain B, Crystal Structure Of The Mutant F71a Of Orotidine
5'-Monophosphate Decarboxylase From Methanobacterium
Thermoautotrophicum Complexed With Inhibitor Bmp
Length = 228
Score = 29.3 bits (64), Expect = 3.3, Method: Compositional matrix adjust.
Identities = 15/35 (42%), Positives = 18/35 (51%)
Query: 59 LIIDVSNWDDPEVIKSICEASGKWGFFQIINHGIP 93
+I D D PE + IC A+ K G II HG P
Sbjct: 67 IIADAKVADIPETNEKICRATFKAGADAIIVHGFP 101
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.319 0.139 0.423
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 10,966,046
Number of Sequences: 62578
Number of extensions: 450012
Number of successful extensions: 1205
Number of sequences better than 100.0: 17
Number of HSP's better than 100.0 without gapping: 12
Number of HSP's successfully gapped in prelim test: 5
Number of HSP's that attempted gapping in prelim test: 1170
Number of HSP's gapped (non-prelim): 23
length of query: 355
length of database: 14,973,337
effective HSP length: 100
effective length of query: 255
effective length of database: 8,715,537
effective search space: 2222461935
effective search space used: 2222461935
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 52 (24.6 bits)