BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 018490
(355 letters)
Database: swissprot
539,616 sequences; 191,569,459 total letters
Searching..................................................done
>sp|P36022|DYHC_YEAST Dynein heavy chain, cytoplasmic OS=Saccharomyces cerevisiae (strain
ATCC 204508 / S288c) GN=DYN1 PE=1 SV=1
Length = 4092
Score = 36.6 bits (83), Expect = 0.27, Method: Compositional matrix adjust.
Identities = 43/187 (22%), Positives = 75/187 (40%), Gaps = 39/187 (20%)
Query: 156 DHC------HLKTLKPLSKMSPNLKVIATPNAKTLLDPLFQNVTYVEPGQSSE------- 202
DHC +L KPL ++ P +KV N + LL + +++ +E G
Sbjct: 516 DHCPTEKLSYLVKFKPLMELCPRIKVKVLENQQILLLEIKKDIRQLETGLELLPKILHVE 575
Query: 203 -------IEGRNGSKLRVKATAGPVL-------GPPWQRPENGYLVNSSQGQLTLYYEPH 248
I R L V++ ++ G W G +++S QL PH
Sbjct: 576 ALNNIPPISARISYFLNVQSRIDNIVQYLEALFGSNWNDTLEGRSISTSIVQLRKETNPH 635
Query: 249 CVYNQ---NFLEKERSDIIITPVIKQLLPKFTLVSGQEDAVKLAKLLHAKFIVPMKNGDL 305
V+ NF EK ++++ TP++K L+ ED +L ++ F + +L
Sbjct: 636 DVFLHWLGNFPEKATANLLTTPILK-------LIRNNEDDYELK--VNFDFALAAAYSEL 686
Query: 306 DSKGFLA 312
S ++A
Sbjct: 687 RSLTYMA 693
>sp|B0TEP6|Y1673_HELMI UPF0173 metal-dependent hydrolase Helmi_16730 OS=Heliobacterium
modesticaldum (strain ATCC 51547 / Ice1) GN=Helmi_16730
PE=3 SV=1
Length = 238
Score = 35.0 bits (79), Expect = 0.93, Method: Compositional matrix adjust.
Identities = 41/151 (27%), Positives = 68/151 (45%), Gaps = 32/151 (21%)
Query: 212 RVKATA-----GPVLGPPWQRPEN--GYLVNSSQGQLTLYYEPHC-------VYNQNFLE 257
RV+ TA G + G + N G+LVN G ++Y+ + N FL+
Sbjct: 101 RVRLTAAVHGSGIIEGDNYLDVGNPCGFLVN--MGGKSVYHAGDTGLTRDMELINMCFLK 158
Query: 258 KERSDIIITPVIKQLLPKFTLVSGQEDAVKLAKLLHAKFIVPMKNGDLDSKGFLASIIQS 317
R D+ + P+ F + G EDA+ K+LH + IVPM +I+
Sbjct: 159 GGRLDLALLPIGDN----FGM--GPEDALYATKMLHPRMIVPMHYNTF-------PVIEQ 205
Query: 318 EGTVESFKELLSKELPDAQLLEPTPGEPLEI 348
+ V +FK +++ EL D++ PG+ L +
Sbjct: 206 D--VAAFKRVVT-ELTDSECHVLAPGDTLTL 233
>sp|Q8U4Q7|AUBA_PYRFU RNA-binding protein AU-1 OS=Pyrococcus furiosus (strain ATCC 43587
/ DSM 3638 / JCM 8422 / Vc1) GN=aubA PE=1 SV=1
Length = 469
Score = 34.7 bits (78), Expect = 1.2, Method: Compositional matrix adjust.
Identities = 28/79 (35%), Positives = 44/79 (55%), Gaps = 9/79 (11%)
Query: 270 KQLLPKFTLVSGQEDAVKLAKLLHAKFIVPMKNGDLDSKGFLASIIQSEGTVESFKELLS 329
K P+FTL AV +A+ + AK +P + + SKGFL +II S+G + L+
Sbjct: 275 KSYDPEFTL------AVDVAEGILAK--LPSQRQKI-SKGFLEAIITSKGPKVGWIFTLN 325
Query: 330 KELPDAQLLEPTPGEPLEI 348
PD Q+++ PGE +E+
Sbjct: 326 HVKPDGQIIKIGPGEVIEV 344
>sp|Q7VNP2|DUSB_HAEDU tRNA-dihydrouridine synthase B OS=Haemophilus ducreyi (strain
35000HP / ATCC 700724) GN=dusB PE=3 SV=1
Length = 320
Score = 33.5 bits (75), Expect = 2.2, Method: Compositional matrix adjust.
Identities = 14/40 (35%), Positives = 23/40 (57%)
Query: 100 VDPILVGNLDFGIPWLFDAGKKFLKSFQIVLIGMKTLVQL 139
D +++G FG PWLF K+FL++ I+ + + QL
Sbjct: 218 ADAVMIGRGSFGRPWLFQELKQFLETGDIIDLSIDEKCQL 257
>sp|Q317E4|Y151_DESDG UPF0173 metal-dependent hydrolase Dde_0151 OS=Desulfovibrio
desulfuricans (strain G20) GN=Dde_0151 PE=3 SV=1
Length = 240
Score = 33.5 bits (75), Expect = 2.7, Method: Compositional matrix adjust.
Identities = 25/79 (31%), Positives = 34/79 (43%), Gaps = 11/79 (13%)
Query: 276 FTLVSGQEDAVKLAKLLHAKFIVPMKNGDLDSKGFLASIIQSEGTVESFKELLSKELPDA 335
FT+ + Q A +LL A+ +VPM G EG FKE L PD
Sbjct: 169 FTMDAKQ--AALACRLLRARSVVPMHWGTFPVL---------EGNTARFKEQLMNFAPDC 217
Query: 336 QLLEPTPGEPLEIPAPSDN 354
+L + PGE L + S+
Sbjct: 218 RLFDMKPGETLTLETASEG 236
>sp|A5I666|OBG_CLOBH GTPase obg OS=Clostridium botulinum (strain Hall / ATCC 3502 / NCTC
13319 / Type A) GN=obg PE=3 SV=1
Length = 424
Score = 33.5 bits (75), Expect = 2.7, Method: Compositional matrix adjust.
Identities = 21/74 (28%), Positives = 34/74 (45%), Gaps = 11/74 (14%)
Query: 172 NLKVIATPNAKTLLDPLFQNVTYVEP---GQSSEIEGRNGSKLRVKATAGPVLG------ 222
N+ ++ PN TLLD ++ EP G S+ G+NG L +K G ++
Sbjct: 43 NVVLVVDPNMTTLLDFTYKRKYKAEPGGNGAGSKCFGKNGKDLHIKVPMGTIVKDAETDK 102
Query: 223 --PPWQRPENGYLV 234
+PE+ Y+V
Sbjct: 103 IMADLSKPEDSYVV 116
>sp|A7FXU6|OBG_CLOB1 GTPase obg OS=Clostridium botulinum (strain ATCC 19397 / Type A)
GN=obg PE=3 SV=1
Length = 424
Score = 33.5 bits (75), Expect = 2.7, Method: Compositional matrix adjust.
Identities = 21/74 (28%), Positives = 34/74 (45%), Gaps = 11/74 (14%)
Query: 172 NLKVIATPNAKTLLDPLFQNVTYVEP---GQSSEIEGRNGSKLRVKATAGPVLG------ 222
N+ ++ PN TLLD ++ EP G S+ G+NG L +K G ++
Sbjct: 43 NVVLVVDPNMTTLLDFTYKRKYKAEPGGNGAGSKCFGKNGKDLHIKVPMGTIVKDAETDK 102
Query: 223 --PPWQRPENGYLV 234
+PE+ Y+V
Sbjct: 103 IMADLSKPEDSYVV 116
>sp|A7GHK2|OBG_CLOBL GTPase obg OS=Clostridium botulinum (strain Langeland / NCTC 10281
/ Type F) GN=obg PE=3 SV=1
Length = 424
Score = 33.5 bits (75), Expect = 2.7, Method: Compositional matrix adjust.
Identities = 21/74 (28%), Positives = 34/74 (45%), Gaps = 11/74 (14%)
Query: 172 NLKVIATPNAKTLLDPLFQNVTYVEP---GQSSEIEGRNGSKLRVKATAGPVLG------ 222
N+ ++ PN TLLD ++ EP G S+ G+NG L +K G ++
Sbjct: 43 NVVLVVDPNMTTLLDFTYKRKYKAEPGGNGAGSKCFGKNGKDLHIKVPMGTIVKDAETDK 102
Query: 223 --PPWQRPENGYLV 234
+PE+ Y+V
Sbjct: 103 IMADLSKPEDSYVV 116
>sp|Q9V1C7|Y500_PYRAB UPF0173 metal-dependent hydrolase PYRAB05000 OS=Pyrococcus abyssi
(strain GE5 / Orsay) GN=PYRAB05000 PE=3 SV=1
Length = 225
Score = 33.5 bits (75), Expect = 2.8, Method: Compositional matrix adjust.
Identities = 52/228 (22%), Positives = 86/228 (37%), Gaps = 61/228 (26%)
Query: 83 YLEGNSWLWDLDGVKVLVDPILVGNLDFGIPWLFDAGKKFLKSFQIVLIGMKTLVQLSDL 142
Y+EG+ K+L+DP L GN + + + D
Sbjct: 13 YIEGSK--------KILIDPFLTGN-------------------------PQAVAKPEDF 39
Query: 143 PQVDCLLITQSLDDHCHLKTLKPLSKMSPNLKVIATPNAKTLLDPLFQNVTYVEPGQSSE 202
VD +L+T + D H+ ++K+S K++A + + F+ V E
Sbjct: 40 KDVDLILVTHAHGD--HIGDAGEIAKIS-GAKIVAMYDIANYIAEKFKGV---------E 87
Query: 203 IEGRNGSKLRVKATAGPVLGPPWQRPENG-YLVNSSQGQL------TLYYEPHCVYNQNF 255
G N V V P W +G Y + ++ G + T+Y H F
Sbjct: 88 TVGMNYGPTEVDGVF-IVQVPAWHSSSDGKYSIGNASGFIVKLDGKTIY---HAGDTYVF 143
Query: 256 LEKERSDIIITPVIKQLLP---KFTLVSGQEDAVKLAKLLHAKFIVPM 300
+ E + P+ LLP FT+ G ++A K +LL + +VPM
Sbjct: 144 KDMELFSELYGPIDVALLPIGGHFTM--GVKEAAKAVELLKPRTVVPM 189
>sp|B1ILY5|OBG_CLOBK GTPase obg OS=Clostridium botulinum (strain Okra / Type B1) GN=obg
PE=3 SV=1
Length = 424
Score = 33.1 bits (74), Expect = 2.9, Method: Compositional matrix adjust.
Identities = 21/74 (28%), Positives = 34/74 (45%), Gaps = 11/74 (14%)
Query: 172 NLKVIATPNAKTLLDPLFQNVTYVEP---GQSSEIEGRNGSKLRVKATAGPVLG------ 222
N+ ++ PN TLLD ++ EP G S+ G+NG L +K G ++
Sbjct: 43 NVVLVVDPNMTTLLDFTYKRKYKAEPGGNGAGSKCFGKNGKDLHIKVPMGTIVKDVETDK 102
Query: 223 --PPWQRPENGYLV 234
+PE+ Y+V
Sbjct: 103 IMADLSKPEDSYVV 116
>sp|B1KZR3|OBG_CLOBM GTPase obg OS=Clostridium botulinum (strain Loch Maree / Type A3)
GN=obg PE=3 SV=1
Length = 424
Score = 33.1 bits (74), Expect = 3.0, Method: Compositional matrix adjust.
Identities = 21/74 (28%), Positives = 34/74 (45%), Gaps = 11/74 (14%)
Query: 172 NLKVIATPNAKTLLDPLFQNVTYVEP---GQSSEIEGRNGSKLRVKATAGPVLG------ 222
N+ ++ PN TLLD ++ EP G S+ G+NG L +K G ++
Sbjct: 43 NVVLVVDPNMTTLLDFTYKRKYKAEPGGNGAGSKCFGKNGKDLHIKVPMGTIVKDAETDK 102
Query: 223 --PPWQRPENGYLV 234
+PE+ Y+V
Sbjct: 103 IMADLSKPEDSYVV 116
>sp|P18035|TRBB_ECOLI Protein TrbB OS=Escherichia coli (strain K12) GN=trbB PE=4 SV=2
Length = 181
Score = 33.1 bits (74), Expect = 3.7, Method: Compositional matrix adjust.
Identities = 28/104 (26%), Positives = 40/104 (38%), Gaps = 19/104 (18%)
Query: 182 KTLLDPLFQNVTYVEPGQSSEIEGRNGSKLRVKATAGPVLG---------PPWQRPENGY 232
K+LL L + V+ EIE + A P G P W R NG
Sbjct: 5 KSLLFTLLLSAAAVQASTRDEIERLWNPQGMATQPAQPAAGTSARTAKPAPRWFRLSNGR 64
Query: 233 LVNSSQGQLTLYYEPHCVYNQNFLEKERSDIIITPVIKQLLPKF 276
VN + ++ L+ + HC Y F PV+KQL ++
Sbjct: 65 QVNLADWKVVLFMQGHCPYCHQF----------DPVLKQLAQQY 98
>sp|O57857|AUBA_PYRHO RNA-binding protein AU-1 OS=Pyrococcus horikoshii (strain ATCC
700860 / DSM 12428 / JCM 9974 / NBRC 100139 / OT-3)
GN=aubA PE=3 SV=2
Length = 469
Score = 32.7 bits (73), Expect = 4.7, Method: Compositional matrix adjust.
Identities = 24/75 (32%), Positives = 43/75 (57%), Gaps = 9/75 (12%)
Query: 274 PKFTLVSGQEDAVKLAKLLHAKFIVPMKNGDLDSKGFLASIIQSEGTVESFKELLSKELP 333
P+FTL AV++A+ + AK P + + S+GF+ +I+ S+G + L+ P
Sbjct: 279 PEFTL------AVEVAEGILAKM--PSQRQKI-SEGFIEAIVNSKGPKLGWMFTLNHVKP 329
Query: 334 DAQLLEPTPGEPLEI 348
D Q+++ PGE +E+
Sbjct: 330 DGQVIKIGPGEVIEV 344
>sp|A3DMY1|Y891_STAMF UPF0173 metal-dependent hydrolase Smar_0891 OS=Staphylothermus
marinus (strain ATCC 43588 / DSM 3639 / F1) GN=Smar_0891
PE=3 SV=1
Length = 228
Score = 32.3 bits (72), Expect = 5.5, Method: Compositional matrix adjust.
Identities = 46/196 (23%), Positives = 73/196 (37%), Gaps = 37/196 (18%)
Query: 125 SFQIVLIGM----KTL------------VQLSDLP--QVDCLLITQSLDDHCHLKTLKPL 166
+F+IVL G+ KT+ V+LSD ++D + +T DH
Sbjct: 11 AFEIVLTGLDGAEKTILIDPWIENPLSPVKLSDYKNRKIDYIFVTHDHGDH--------- 61
Query: 167 SKMSPNLKVIATPNAKTLLDPLFQNVTYVEPGQSSEIEGRNGSKLRVKATAGPVLGPPWQ 226
+ +++ AK + +F+ Y I+G G KL + VL P W
Sbjct: 62 --LGNAIEIAKETGAKIV--GIFEIALYAREKGVQSIDGNIGGKLNIPDLFA-VLTPAWH 116
Query: 227 RPENGYLVNSSQG--QLTLYYEPHCVYNQNFLEKERSDIIITPVIKQLLPKFTLVSGQED 284
G G +T+Y H F+E + P I L G ++
Sbjct: 117 SSNRGAPTGVVVGGKDVTIY---HAGDTGLFMEMSLIGELYGPDIALLPIGGHYTMGVKE 173
Query: 285 AVKLAKLLHAKFIVPM 300
AVK +L+ K +PM
Sbjct: 174 AVKAVQLIRPKIAIPM 189
>sp|Q98QK8|OBG_MYCPU GTPase obg OS=Mycoplasma pulmonis (strain UAB CTIP) GN=obg PE=3
SV=1
Length = 418
Score = 32.3 bits (72), Expect = 6.4, Method: Compositional matrix adjust.
Identities = 28/90 (31%), Positives = 43/90 (47%), Gaps = 12/90 (13%)
Query: 108 LDFGIPWLFDAGKKFLKSFQIVLIGMKTLVQLSDLPQVDCLLITQSLDDHCHLKTLKPLS 167
+DFG D K L+ +Q + +K L L +L + D +++ D C K L+ S
Sbjct: 241 IDFG-----DENKNPLQDYQEIRNELK-LYNL-NLEEKDEVIVANKKDQECFEKKLEEFS 293
Query: 168 KMSPNLKVIA-----TPNAKTLLDPLFQNV 192
K PN K+IA N L + L+Q+V
Sbjct: 294 KHYPNKKIIAISALKQENLDKLKEALWQSV 323
>sp|Q5RBD9|TBCE_PONAB Tubulin-specific chaperone E OS=Pongo abelii GN=TBCE PE=2 SV=1
Length = 527
Score = 32.0 bits (71), Expect = 7.8, Method: Compositional matrix adjust.
Identities = 33/134 (24%), Positives = 61/134 (45%), Gaps = 16/134 (11%)
Query: 198 GQSSEIEGRNGSKLR----VKATAGPVLGPPWQRPENGYLVNSSQGQLTLYYEPHCVYNQ 253
GQ E+ G + + +R V AGP LG W PE G S +G T+Y++
Sbjct: 11 GQRVEVNGEHAT-VRFAGVVPPVAGPWLGVEWDNPERGKHDGSHEG--TVYFQCRHPTGG 67
Query: 254 NFLEKERSDIIITPVIKQLLPKFTLVSGQEDAVKLAKLLHAKFIVPMKNGDLDSKGFLAS 313
+F+ + + T + + ++ L G E+ K + IV + N +++ GF S
Sbjct: 68 SFIRPNKVN-FGTDFLTAIKNRYVLEDGPEEDRK-------EQIVTIGNKPVETIGF-DS 118
Query: 314 IIQSEGTVESFKEL 327
I++ + + +E+
Sbjct: 119 IMKQQSQLSKLQEV 132
Database: swissprot
Posted date: Mar 23, 2013 2:32 AM
Number of letters in database: 191,569,459
Number of sequences in database: 539,616
Lambda K H
0.318 0.136 0.405
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 133,209,337
Number of Sequences: 539616
Number of extensions: 5556226
Number of successful extensions: 14560
Number of sequences better than 100.0: 22
Number of HSP's better than 100.0 without gapping: 4
Number of HSP's successfully gapped in prelim test: 18
Number of HSP's that attempted gapping in prelim test: 14554
Number of HSP's gapped (non-prelim): 24
length of query: 355
length of database: 191,569,459
effective HSP length: 118
effective length of query: 237
effective length of database: 127,894,771
effective search space: 30311060727
effective search space used: 30311060727
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 62 (28.5 bits)