Query 018490
Match_columns 355
No_of_seqs 350 out of 2333
Neff 7.8
Searched_HMMs 46136
Date Fri Mar 29 09:27:09 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/018490.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/018490hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 KOG3798 Predicted Zn-dependent 100.0 2.1E-40 4.6E-45 294.1 15.5 246 77-347 79-340 (343)
2 PRK11709 putative L-ascorbate 100.0 2.5E-36 5.3E-41 291.4 24.9 257 73-352 32-328 (355)
3 PRK00685 metal-dependent hydro 100.0 1.7E-35 3.7E-40 270.1 24.3 217 79-348 1-228 (228)
4 COG2220 Predicted Zn-dependent 100.0 8.8E-35 1.9E-39 270.8 24.5 235 75-351 3-253 (258)
5 PF13483 Lactamase_B_3: Beta-l 100.0 2.3E-28 5E-33 212.1 14.3 158 80-301 1-163 (163)
6 PF12706 Lactamase_B_2: Beta-l 99.8 5E-20 1.1E-24 163.1 12.1 152 140-302 25-194 (194)
7 TIGR02651 RNase_Z ribonuclease 99.8 4.9E-19 1.1E-23 168.1 19.1 213 85-348 17-299 (299)
8 PRK11244 phnP carbon-phosphoru 99.8 1.2E-18 2.6E-23 161.5 21.2 176 86-304 37-223 (250)
9 PRK02113 putative hydrolase; P 99.8 3.2E-18 6.9E-23 158.7 20.2 174 86-304 35-225 (252)
10 PRK00055 ribonuclease Z; Revie 99.8 2.1E-18 4.5E-23 160.9 16.4 225 79-351 2-269 (270)
11 TIGR02649 true_RNase_BN ribonu 99.8 1.4E-17 3E-22 158.7 19.0 213 85-348 16-303 (303)
12 TIGR03307 PhnP phosphonate met 99.8 1.9E-17 4E-22 152.4 17.8 176 86-304 27-213 (238)
13 PRK05184 pyrroloquinoline quin 99.7 2.3E-15 5E-20 143.3 20.4 222 86-348 39-302 (302)
14 COG1234 ElaC Metal-dependent h 99.6 6.2E-15 1.3E-19 139.6 16.0 222 79-348 2-291 (292)
15 TIGR02108 PQQ_syn_pqqB coenzym 99.6 3.5E-14 7.7E-19 135.0 18.4 190 143-348 78-302 (302)
16 PRK04286 hypothetical protein; 99.6 1.8E-14 4E-19 136.9 15.2 194 86-303 15-249 (298)
17 PRK02126 ribonuclease Z; Provi 99.6 7.1E-14 1.5E-18 134.7 18.2 180 82-304 12-315 (334)
18 TIGR00649 MG423 conserved hypo 99.5 1.7E-13 3.7E-18 136.4 17.0 191 85-303 13-227 (422)
19 TIGR03675 arCOG00543 arCOG0054 99.5 2.6E-12 5.6E-17 133.0 19.0 192 76-300 172-409 (630)
20 smart00849 Lactamase_B Metallo 99.4 2.5E-12 5.5E-17 111.8 11.6 168 82-301 2-183 (183)
21 COG0595 mRNA degradation ribon 99.3 5.8E-11 1.3E-15 120.4 16.2 192 77-300 7-233 (555)
22 PRK11921 metallo-beta-lactamas 99.2 4.9E-11 1.1E-15 117.8 12.0 125 87-249 34-163 (394)
23 COG1782 Predicted metal-depend 99.2 5.4E-10 1.2E-14 109.2 16.9 191 77-301 179-416 (637)
24 TIGR02650 RNase_Z_T_toga ribon 99.2 4.1E-10 8.8E-15 104.8 14.3 187 141-343 37-275 (277)
25 COG1236 YSH1 Predicted exonucl 99.1 5.3E-09 1.1E-13 104.2 18.0 148 85-269 13-189 (427)
26 COG0426 FpaA Uncharacterized f 99.0 9.5E-10 2.1E-14 106.2 10.5 128 87-250 37-167 (388)
27 PRK05452 anaerobic nitric oxid 99.0 1.3E-09 2.8E-14 110.2 11.7 128 87-249 36-167 (479)
28 COG1235 PhnP Metal-dependent h 99.0 5.7E-09 1.2E-13 97.9 13.1 154 143-306 61-239 (269)
29 PF00753 Lactamase_B: Metallo- 99.0 6.6E-10 1.4E-14 96.3 6.3 179 83-301 3-194 (194)
30 COG1237 Metal-dependent hydrol 98.9 4.3E-08 9.3E-13 89.4 16.3 184 88-305 24-234 (259)
31 COG2248 Predicted hydrolase (m 98.9 2.1E-08 4.6E-13 90.5 13.9 224 88-339 17-274 (304)
32 TIGR03413 GSH_gloB hydroxyacyl 98.9 1.1E-08 2.5E-13 94.7 12.5 124 144-305 43-168 (248)
33 TIGR00361 ComEC_Rec2 DNA inter 98.9 1.2E-07 2.6E-12 99.7 21.4 208 77-338 438-656 (662)
34 KOG2121 Predicted metal-depend 98.9 5.8E-10 1.3E-14 113.4 3.5 211 76-312 440-696 (746)
35 PRK11539 ComEC family competen 98.9 1E-07 2.3E-12 101.5 20.8 214 76-345 498-722 (755)
36 PLN02398 hydroxyacylglutathion 98.9 4.5E-08 9.9E-13 93.9 16.0 126 144-307 121-250 (329)
37 KOG1137 mRNA cleavage and poly 98.9 1.4E-08 3E-13 100.2 12.3 160 76-269 11-208 (668)
38 PLN02469 hydroxyacylglutathion 98.9 3E-08 6.5E-13 92.5 14.0 92 144-252 46-139 (258)
39 PLN02962 hydroxyacylglutathion 98.8 1.1E-07 2.3E-12 88.3 13.0 161 85-302 22-192 (251)
40 KOG1136 Predicted cleavage and 98.8 3.2E-07 7E-12 85.9 15.9 156 84-269 15-205 (501)
41 PRK10241 hydroxyacylglutathion 98.7 1.2E-07 2.5E-12 88.2 12.1 125 144-306 45-170 (251)
42 COG2333 ComEC Predicted hydrol 98.7 2.4E-06 5.3E-11 80.6 20.2 203 79-331 44-259 (293)
43 KOG0813 Glyoxylase [General fu 98.5 7.9E-07 1.7E-11 82.0 10.7 132 141-306 48-182 (265)
44 COG0491 GloB Zn-dependent hydr 98.4 3.4E-06 7.3E-11 76.6 10.9 96 144-254 62-173 (252)
45 KOG1135 mRNA cleavage and poly 97.9 0.00012 2.5E-09 74.7 11.5 151 86-268 15-198 (764)
46 PF02112 PDEase_II: cAMP phosp 97.8 0.00046 1E-08 66.5 14.2 193 144-343 79-335 (335)
47 KOG0814 Glyoxylase [General fu 97.6 7.8E-05 1.7E-09 64.2 4.6 110 94-251 31-143 (237)
48 KOG1361 Predicted hydrolase in 97.3 0.0013 2.7E-08 65.7 9.8 131 144-292 112-252 (481)
49 PF14597 Lactamase_B_5: Metall 97.1 0.0026 5.6E-08 55.4 8.0 156 85-302 22-181 (199)
50 COG5212 PDE1 Low-affinity cAMP 95.5 0.37 8E-06 44.8 12.9 191 143-347 111-355 (356)
51 KOG4736 Uncharacterized conser 93.5 0.43 9.2E-06 44.8 8.5 89 144-253 125-215 (302)
52 COG2015 Alkyl sulfatase and re 83.2 0.72 1.6E-05 46.2 2.0 35 144-180 164-202 (655)
53 TIGR00649 MG423 conserved hypo 82.9 2.6 5.5E-05 42.1 5.9 61 276-350 358-419 (422)
54 PF07521 RMMBL: RNA-metabolisi 79.2 2.5 5.4E-05 27.9 3.0 27 276-302 14-40 (43)
55 COG0595 mRNA degradation ribon 72.4 5.6 0.00012 41.2 4.9 60 278-351 370-430 (555)
56 TIGR03675 arCOG00543 arCOG0054 61.0 18 0.00038 38.3 5.9 59 275-348 569-629 (630)
57 KOG3592 Microtubule-associated 55.1 6.2 0.00013 41.5 1.4 47 87-158 49-95 (934)
58 PF13691 Lactamase_B_4: tRNase 54.2 34 0.00073 24.7 4.7 48 86-158 12-61 (63)
59 KOG3798 Predicted Zn-dependent 50.5 6.7 0.00015 36.3 0.7 63 90-166 98-160 (343)
60 COG4090 Uncharacterized protei 47.5 24 0.00053 29.3 3.4 69 231-306 46-129 (154)
61 PRK05096 guanosine 5'-monophos 42.1 30 0.00064 33.6 3.7 48 143-191 121-174 (346)
62 KOG1136 Predicted cleavage and 40.8 74 0.0016 30.9 6.0 61 276-351 388-448 (501)
63 PF00478 IMPDH: IMP dehydrogen 37.4 32 0.00069 33.6 3.2 46 144-190 120-171 (352)
64 PF07522 DRMBL: DNA repair met 36.8 36 0.00078 27.0 2.9 25 276-300 81-105 (110)
65 TIGR01305 GMP_reduct_1 guanosi 32.7 53 0.0011 31.9 3.7 48 143-191 120-173 (343)
66 KOG1137 mRNA cleavage and poly 30.0 1.1E+02 0.0024 31.7 5.6 63 276-352 395-461 (668)
No 1
>KOG3798 consensus Predicted Zn-dependent hydrolase (beta-lactamase superfamily) [General function prediction only]
Probab=100.00 E-value=2.1e-40 Score=294.14 Aligned_cols=246 Identities=22% Similarity=0.276 Sum_probs=201.2
Q ss_pred CceEEEEecCcEEEEEeCCeEEEEccccCCCCCCCcccccccCccccchhhhhhhccccCCCCCCCCCcCEEEecCCCCC
Q 018490 77 DVFKLTYLEGNSWLWDLDGVKVLVDPILVGNLDFGIPWLFDAGKKFLKSFQIVLIGMKTLVQLSDLPQVDCLLITQSLDD 156 (355)
Q Consensus 77 ~~~~itwlGhss~li~~~g~~iLiDP~~sg~~~~p~~~~~~g~~~r~~~~~~~~~g~~~~~~~~~lp~iD~VlISH~H~D 156 (355)
..+--|||||||.++..+|.++++||+|+.+++| .- .|+ +|+.+ ++..++++|++|.+++||+|+|
T Consensus 79 ~~~~~twlg~a~~~~~~~g~~~~tdpvf~d~~if--~s--~gP-kry~~---------pp~~~~~~p~~d~~~vsh~h~d 144 (343)
T KOG3798|consen 79 SDLFATWLGHATVLVDLEGVKFVTDPVWADRASF--TS--FGP-KRYRP---------PPMKLEDLPDLDFAVVSHDHYD 144 (343)
T ss_pred CcHHHhhhcceeEEEeccCcEEecchhhccchhh--cc--cCc-ccccC---------CchhhccCCCCceecccccccc
Confidence 4455699999999999999999999999987763 22 244 34444 5667899999999999999999
Q ss_pred CCChhhHHHhhhcCCCceEEEcCChHH-HHhhcC-CceEEcCCCceEEeCcccCCceEEEEEecCccC-CCC-C---CCc
Q 018490 157 HCHLKTLKPLSKMSPNLKVIATPNAKT-LLDPLF-QNVTYVEPGQSSEIEGRNGSKLRVKATAGPVLG-PPW-Q---RPE 229 (355)
Q Consensus 157 Hld~~tl~~l~~~~~~~~v~~~~~~~~-~l~~~~-~~v~~l~~~e~~~l~~~~~~~l~i~~~pa~~~g-~~~-~---~~~ 229 (355)
|+|..+++.+..+. .++.+.+++.. ++...+ ..++++.||++.++- ..+..++|.|+|++|++ |++ + +.|
T Consensus 145 hld~~~~~~~~~~~--~~~wfvp~g~k~~m~~~gc~~v~el~wwe~~~~v-kn~~~~ti~~tPaqHw~~R~L~D~Nk~LW 221 (343)
T KOG3798|consen 145 HLDADAVKKITDRN--PQIWFVPLGMKKWMEGDGSSTVTELNWGESSEFV-KNGKTYTIWCLPAQHWGQRGLFDRNKRLW 221 (343)
T ss_pred ccchHHHHhhhccC--ccceeehhhhhheecCCCCCceeEeeccchhcee-cCCcEEEEEEcchhhhcccccccCCccee
Confidence 99999999998764 44455566554 665554 569999999887763 22456899999999875 443 2 349
Q ss_pred cEEEEEecCCceeEEEcCCCCCCc-cccccc----CCcEEEEccccccCCCcee---ccCHHHHHHHHHHcCCCEEEEec
Q 018490 230 NGYLVNSSQGQLTLYYEPHCVYNQ-NFLEKE----RSDIIITPVIKQLLPKFTL---VSGQEDAVKLAKLLHAKFIVPMK 301 (355)
Q Consensus 230 ~g~~i~~~~~~~~i~~sGDt~~~~-~~~~~~----~~Dl~~l~~g~~~~~~~~~---h~~~~ea~~~~~~l~~k~~ip~H 301 (355)
+||.+..+ +.++||+|||||.+ .|++|+ ++|||.+|||+ |.|+|.| |.+|+||+++++++++|..|.+|
T Consensus 222 ~sw~v~g~--~nrfffaGDTGyc~~~F~~IgerfGpfdLAaiPiGa-YePrWfmK~~HInPeEav~Ihkdv~arns~gIH 298 (343)
T KOG3798|consen 222 SSWAVIGE--NNRFFFAGDTGYCDGEFKKIGERFGPFDLAAIPIGA-YEPRWFMKSQHINPEEAVEIHKDVRAKNSIGIH 298 (343)
T ss_pred eeeEEecC--CceEEecCCCCcccHHHHHHHHhcCCcceeeccccc-cCchhhcccccCCHHHHHHHHHHHhhhcceeEe
Confidence 99999988 56999999999998 677764 99999999987 9998876 99999999999999999999999
Q ss_pred cCCccccccccccccccCCHHHHHHHHHhcCCCCe-EeccCCCCeEE
Q 018490 302 NGDLDSKGFLASIIQSEGTVESFKELLSKELPDAQ-LLEPTPGEPLE 347 (355)
Q Consensus 302 ~~~f~~~g~l~~~~~~~~~~~~~~~~~~~~~~~~~-~~~p~~Ge~~~ 347 (355)
||||. |+.+ -.-||.++++++++..|.+.+ +++++.||.++
T Consensus 299 WGTf~----l~~E-yyLEP~~KL~el~e~~glkd~~f~~~e~Ge~~e 340 (343)
T KOG3798|consen 299 WGTFH----LGSE-YYLEPRDKLKELMEAEGLKDTSFVTIEMGEIWE 340 (343)
T ss_pred eeeee----cccc-eecCcHHHHHHHHHhcCCCCceEEeeccccccc
Confidence 99998 7776 357999999999999877644 99999999553
No 2
>PRK11709 putative L-ascorbate 6-phosphate lactonase; Provisional
Probab=100.00 E-value=2.5e-36 Score=291.36 Aligned_cols=257 Identities=16% Similarity=0.196 Sum_probs=188.4
Q ss_pred ccCCCceEEEEecCcEEEEEe-CCeEEEEccccCCCCC--CCccccc--------ccCccccchhhhhhhccccCCCCCC
Q 018490 73 AVATDVFKLTYLEGNSWLWDL-DGVKVLVDPILVGNLD--FGIPWLF--------DAGKKFLKSFQIVLIGMKTLVQLSD 141 (355)
Q Consensus 73 ~~~~~~~~itwlGhss~li~~-~g~~iLiDP~~sg~~~--~p~~~~~--------~g~~~r~~~~~~~~~g~~~~~~~~~ 141 (355)
.+++++++++||||||++|++ +|++||||+|++ +++ ...++.. .|. +|+.+ .+...+.++++++
T Consensus 32 ~~~~~~~~~~wlG~a~~li~~~~g~~ILiD~~~~-~g~~~~~~~~~~~~~~~~~~~G~-~~~~P---~lr~~p~~idp~~ 106 (355)
T PRK11709 32 VVPPGTFAMWWLGCTGIWLKTEGGTNVCVDLWCG-TGKQTHGNPLMKRGHQMARMAGV-RKLQP---NLRTQPFVLDPFA 106 (355)
T ss_pred ccCCCcEEEEEecceEEEEEcCCCcEEEEeecCC-CCCccccccccccccchhhhccc-cccCC---CCCCCCcccCHHH
Confidence 345688999999999999999 689999998875 332 0011110 011 11111 0011225566778
Q ss_pred CCCcCEEEecCCCCCCCChhhHHHhhhcC-CCceEEEcCChHHHHhhcC---CceEEcCCCceEEeCcccCCceEEEEEe
Q 018490 142 LPQVDCLLITQSLDDHCHLKTLKPLSKMS-PNLKVIATPNAKTLLDPLF---QNVTYVEPGQSSEIEGRNGSKLRVKATA 217 (355)
Q Consensus 142 lp~iD~VlISH~H~DHld~~tl~~l~~~~-~~~~v~~~~~~~~~l~~~~---~~v~~l~~~e~~~l~~~~~~~l~i~~~p 217 (355)
+++||+|||||.|+||+|..++..+.+.. ++++++++.....++.+++ .++++++||++++++ +++|+++|
T Consensus 107 i~~IDaVLiTH~H~DHlD~~tl~~l~~~~~~~~~~v~p~~~~~~~~~~Gvp~~rv~~v~~Ge~i~ig-----~v~It~lp 181 (355)
T PRK11709 107 IREIDAVLATHDHSDHIDVNVAAAVLQNCADHVKFIGPQACVDLWIGWGVPKERCIVVKPGDVVKVK-----DIKIHALD 181 (355)
T ss_pred CCCCCEEEECCCcccccChHHHHHHHhhcCCCcEEEEcHHHHHHHHhcCCCcceEEEecCCCcEEEC-----CEEEEEEe
Confidence 99999999999999999999999887654 3466777666666777775 479999999999998 89999999
Q ss_pred cCc-----------cCC---C---CCCCccEEEEEecCCceeEEEcCCCCCCccccccc---CCcEEEEccccccCCC-c
Q 018490 218 GPV-----------LGP---P---WQRPENGYLVNSSQGQLTLYYEPHCVYNQNFLEKE---RSDIIITPVIKQLLPK-F 276 (355)
Q Consensus 218 a~~-----------~g~---~---~~~~~~g~~i~~~~~~~~i~~sGDt~~~~~~~~~~---~~Dl~~l~~g~~~~~~-~ 276 (355)
+.| +.+ . ....++||+|+.+ +.+|||+|||+|.+.+.+++ ++|++++++|+ + |. .
T Consensus 182 a~h~~~~i~~p~~h~~~~~~~~~d~~~~~~gyvie~~--~~tvy~sGDT~~~~~~~~i~~~~~iDvall~iG~-~-p~~~ 257 (355)
T PRK11709 182 SFDRTALVTLPADGKAAGGVLPDDMDRRAVNYLFKTP--GGNIYHSGDSHYSNYFAKHGNDHQIDVALGSYGE-N-PRGI 257 (355)
T ss_pred ccccccccccccccccccccccccCCcceEEEEEEeC--CeEEEEeCCCCccHHHHHHHhcCCCCEEEecCCC-C-CCCC
Confidence 943 111 1 1123579999988 68999999999998777654 79999999986 2 33 2
Q ss_pred eeccCHHHHHHHHHHcCCCEEEEeccCCccccccccccccccCCHHHHHHHHHhcC--CCC--eEeccCCCCeEEcCCCC
Q 018490 277 TLVSGQEDAVKLAKLLHAKFIVPMKNGDLDSKGFLASIIQSEGTVESFKELLSKEL--PDA--QLLEPTPGEPLEIPAPS 352 (355)
Q Consensus 277 ~~h~~~~ea~~~~~~l~~k~~ip~H~~~f~~~g~l~~~~~~~~~~~~~~~~~~~~~--~~~--~~~~p~~Ge~~~l~~~~ 352 (355)
..||+++||++++++++++++||+||++|. ...+++++|+++.+-+. ... +-.+-+.|-.+....+.
T Consensus 258 ~~hm~p~ea~~~a~~l~ak~vIpiH~dtf~---------~~~~dp~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 328 (355)
T PRK11709 258 TDKMTSIDILRMAESLNAKVVIPVHHDIWS---------NFQADPQEILVLWKMRKDRLQYGFHPFIWQVGGKFTYPQDK 328 (355)
T ss_pred cCCCCHHHHHHHHHHcCCCEEEEEChhhcc---------ccccCHHHHHHHHHhhhhhccccccceEEecCCEecCCCCc
Confidence 459999999999999999999999999997 23678999988876431 122 33344678777776543
No 3
>PRK00685 metal-dependent hydrolase; Provisional
Probab=100.00 E-value=1.7e-35 Score=270.08 Aligned_cols=217 Identities=23% Similarity=0.354 Sum_probs=174.3
Q ss_pred eEEEEecCcEEEEEeCCeEEEEccccCCCCCCCcccccccCccccchhhhhhhccccCCCCCCCCCcCEEEecCCCCCCC
Q 018490 79 FKLTYLEGNSWLWDLDGVKVLVDPILVGNLDFGIPWLFDAGKKFLKSFQIVLIGMKTLVQLSDLPQVDCLLITQSLDDHC 158 (355)
Q Consensus 79 ~~itwlGhss~li~~~g~~iLiDP~~sg~~~~p~~~~~~g~~~r~~~~~~~~~g~~~~~~~~~lp~iD~VlISH~H~DHl 158 (355)
|+|+||||||++|+.+|.+|||||++++++.. . +..+++ ++|+|||||.|+||+
T Consensus 1 m~i~~lG~s~~li~~~~~~iLiDP~~~~~~~~--------------~-----------~~~~~~-~id~vliTH~H~DH~ 54 (228)
T PRK00685 1 MKITWLGHSAFLIETGGKKILIDPFITGNPLA--------------D-----------LKPEDV-KVDYILLTHGHGDHL 54 (228)
T ss_pred CEEEEEcceEEEEEECCEEEEECCCCCCCCCC--------------C-----------CChhcC-cccEEEeCCCCcccc
Confidence 68999999999999999999999998753320 0 112333 899999999999998
Q ss_pred ChhhHHHhhhcCCCceEEEcCChHHHHhhcC-CceEEcCCCceEEeCcccCCceEEEEEecCccCCCC-------CCCcc
Q 018490 159 HLKTLKPLSKMSPNLKVIATPNAKTLLDPLF-QNVTYVEPGQSSEIEGRNGSKLRVKATAGPVLGPPW-------QRPEN 230 (355)
Q Consensus 159 d~~tl~~l~~~~~~~~v~~~~~~~~~l~~~~-~~v~~l~~~e~~~l~~~~~~~l~i~~~pa~~~g~~~-------~~~~~ 230 (355)
+ ++..+..+ +++++|+++....++++.+ .++++++++++++++ +++|+++|+.|+.... .++++
T Consensus 55 ~--~~~~~~~~-~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-----~~~i~~~p~~H~~~~~~~~~~~~~~~~~ 126 (228)
T PRK00685 55 G--DTVEIAKR-TGATVIANAELANYLSEKGVEKTHPMNIGGTVEFD-----GGKVKLTPALHSSSFIDEDGITYLGNPT 126 (228)
T ss_pred c--cHHHHHHh-CCCEEEEeHHHHHHHHhcCCCceeeccCCCcEEEC-----CEEEEEEEEEcCCCCcCCCCcccCCCce
Confidence 6 33344433 3788999887777887775 488999999999998 8999999998754311 12368
Q ss_pred EEEEEecCCceeEEEcCCCCCCcccccc---cCCcEEEEccccccCCCceeccCHHHHHHHHHHcCCCEEEEeccCCccc
Q 018490 231 GYLVNSSQGQLTLYYEPHCVYNQNFLEK---ERSDIIITPVIKQLLPKFTLVSGQEDAVKLAKLLHAKFIVPMKNGDLDS 307 (355)
Q Consensus 231 g~~i~~~~~~~~i~~sGDt~~~~~~~~~---~~~Dl~~l~~g~~~~~~~~~h~~~~ea~~~~~~l~~k~~ip~H~~~f~~ 307 (355)
||+|+.+ +.+|||+|||+|.+++.++ .++|++++++++ ..||+++||+++++.++||++||+||++|.
T Consensus 127 g~~i~~~--~~~i~~~GDt~~~~~~~~~~~~~~~D~~~~~~~~------~~h~~~~ea~~~~~~~~~k~~v~~H~~~~~- 197 (228)
T PRK00685 127 GFVITFE--GKTIYHAGDTGLFSDMKLIGELHKPDVALLPIGD------NFTMGPEDAALAVELIKPKIVIPMHYNTFP- 197 (228)
T ss_pred EEEEEEC--CeEEEEecCccchhHHHHHHHhhCCCEEEEecCC------ccccCHHHHHHHHHhhCCCEEEEeccCCCc-
Confidence 9999987 6799999999998766544 379999999965 248899999999999999999999999886
Q ss_pred cccccccccccCCHHHHHHHHHhcCCCCeEeccCCCCeEEc
Q 018490 308 KGFLASIIQSEGTVESFKELLSKELPDAQLLEPTPGEPLEI 348 (355)
Q Consensus 308 ~g~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~Ge~~~l 348 (355)
...+++++|++++++ .+.++..+++||++++
T Consensus 198 --------~~~~~~~~~~~~~~~--~~~~~~~~~~G~~~~~ 228 (228)
T PRK00685 198 --------LIEQDPEKFKALVEG--LGTKVVILKPGESIEL 228 (228)
T ss_pred --------CCcCCHHHHHHHHHh--cCCcEEECCCCCEeeC
Confidence 125678999999887 4678888999999875
No 4
>COG2220 Predicted Zn-dependent hydrolases of the beta-lactamase fold [General function prediction only]
Probab=100.00 E-value=8.8e-35 Score=270.80 Aligned_cols=235 Identities=22% Similarity=0.278 Sum_probs=184.9
Q ss_pred CCCceEEEEecCcEEEEEeCCeEEEEccccCCCCCCCcccccccCccccchhhhhhhccccCCCCCCCCCcCEEEecCCC
Q 018490 75 ATDVFKLTYLEGNSWLWDLDGVKVLVDPILVGNLDFGIPWLFDAGKKFLKSFQIVLIGMKTLVQLSDLPQVDCLLITQSL 154 (355)
Q Consensus 75 ~~~~~~itwlGhss~li~~~g~~iLiDP~~sg~~~~p~~~~~~g~~~r~~~~~~~~~g~~~~~~~~~lp~iD~VlISH~H 154 (355)
....|+||||||||++||+++++||||||++++.+ +..+. .......++++|+|+|||+|
T Consensus 3 ~~~~m~itwlGha~~lie~~~~~iliDP~~~~~~~-~~~~~-------------------~~~~~~~~~~~D~ilitH~H 62 (258)
T COG2220 3 SAEDMKITWLGHAAFLIETGGKRILIDPVLSGAPS-PSNFP-------------------GGLFEDLLPPIDYILITHDH 62 (258)
T ss_pred CCcCceEEEecceEEEEEECCEEEEECcccCCCCC-ccccc-------------------CcCChhhcCCCCEEEEeCCC
Confidence 35679999999999999999999999999997665 22111 01123456789999999999
Q ss_pred CCCCChhhHHHhhhcCCCceEEEcCChHH-HHhhcC---CceEEcCCCceEEeCcccCCceEEEEEecCccCC-CC----
Q 018490 155 DDHCHLKTLKPLSKMSPNLKVIATPNAKT-LLDPLF---QNVTYVEPGQSSEIEGRNGSKLRVKATAGPVLGP-PW---- 225 (355)
Q Consensus 155 ~DHld~~tl~~l~~~~~~~~v~~~~~~~~-~l~~~~---~~v~~l~~~e~~~l~~~~~~~l~i~~~pa~~~g~-~~---- 225 (355)
+||+|..++..+... ++++++.+.+.. .+.+++ .++.+++||+.++++ +++++++++.|+.. ..
T Consensus 63 ~DHl~~~~~~~~~~~--~~~~~~~p~~~~~~~~~~g~~~~~~~~~~~~~~~~~~-----~~~i~~~~a~h~~~~~~~~~~ 135 (258)
T COG2220 63 YDHLDDETLIALRTN--KAPVVVVPLGAGDLLIRDGVEAERVHELGWGDVIELG-----DLEITAVPAYHVSARHLPGRG 135 (258)
T ss_pred ccccCHHHHHHHhcC--CCcEEEeHHHHHHHHHhcCCCcceEEeecCCceEEec-----CcEEEEEEeecccccccCCCC
Confidence 999999998888742 477888888874 666776 469999999999998 89998888886422 22
Q ss_pred ---CCCccEEEEEecCCceeEEEcCCCCCCcccccc---cCCcEEEEccccccCCCceeccCHHHHHHHHHHcCCCEEEE
Q 018490 226 ---QRPENGYLVNSSQGQLTLYYEPHCVYNQNFLEK---ERSDIIITPVIKQLLPKFTLVSGQEDAVKLAKLLHAKFIVP 299 (355)
Q Consensus 226 ---~~~~~g~~i~~~~~~~~i~~sGDt~~~~~~~~~---~~~Dl~~l~~g~~~~~~~~~h~~~~ea~~~~~~l~~k~~ip 299 (355)
.+.|+||+|+.+ +.++||+|||+| ..+... +++|++++|+|+ +. ...+|++++++++.+.++++.++|
T Consensus 136 ~~~~~~~~~~vi~~~--g~~iyh~GDt~~-~~~~~~~~~~~~DvallPig~-~~--~~~~~~~~~~~~~~~~l~~~~viP 209 (258)
T COG2220 136 IRPTGLWVGYVIETP--GGRVYHAGDTGY-LFLIIEELDGPVDVALLPIGG-YP--NATMMPPEAAVAAAEVLRPKRVIP 209 (258)
T ss_pred ccccCCceEEEEEeC--CceEEeccCccH-HHHhhhhhcCCccEEEeccCC-CC--CCccCCHHHHHHHHHHhcCCeEEe
Confidence 135899999998 689999999999 333222 268999999987 33 234679999999999999999999
Q ss_pred eccC-CccccccccccccccCCHHHHHHHHHhcCCCCeEeccCCCCeEEcCCC
Q 018490 300 MKNG-DLDSKGFLASIIQSEGTVESFKELLSKELPDAQLLEPTPGEPLEIPAP 351 (355)
Q Consensus 300 ~H~~-~f~~~g~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~Ge~~~l~~~ 351 (355)
|||+ ++. ....++++|+..++..+...++.+++.|+.+.+...
T Consensus 210 ~Hy~~~~~---------~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~ 253 (258)
T COG2220 210 MHYGPTFP---------PIEEDPEEFLHALDAGGEPVKVFILELGESVELEQS 253 (258)
T ss_pred ecccccCc---------cccCCHHHHHHhhhhcCCCceeeEecCCceEEcccc
Confidence 9999 665 236678999988887555678899999999987654
No 5
>PF13483 Lactamase_B_3: Beta-lactamase superfamily domain; PDB: 1VJN_B 3KL7_A.
Probab=99.96 E-value=2.3e-28 Score=212.13 Aligned_cols=158 Identities=28% Similarity=0.506 Sum_probs=108.9
Q ss_pred EEEEecCcEEEEEeCCeEEEEccccCCCCCCCcccccccCccccchhhhhhhccccCCCCCCCCCcCEEEecCCCCCCCC
Q 018490 80 KLTYLEGNSWLWDLDGVKVLVDPILVGNLDFGIPWLFDAGKKFLKSFQIVLIGMKTLVQLSDLPQVDCLLITQSLDDHCH 159 (355)
Q Consensus 80 ~itwlGhss~li~~~g~~iLiDP~~sg~~~~p~~~~~~g~~~r~~~~~~~~~g~~~~~~~~~lp~iD~VlISH~H~DHld 159 (355)
+|||+|||||+||++|++||+|||.+. .. +. ....++|+|||||.|.||++
T Consensus 1 ~It~lgha~~~ie~~g~~iliDP~~~~-~~----~~------------------------~~~~~~D~IlisH~H~DH~~ 51 (163)
T PF13483_consen 1 KITWLGHASFLIETGGKRILIDPWFSS-VG----YA------------------------PPPPKADAILISHSHPDHFD 51 (163)
T ss_dssp EEEEEETTEEEEEETTEEEEES--TTT-------T-------------------------TSS-B-SEEEESSSSTTT-C
T ss_pred CEEEEEeeEEEEEECCEEEEECCCCCc-cC----cc------------------------cccCCCCEEEECCCccccCC
Confidence 699999999999999999999998641 11 00 01148999999999999998
Q ss_pred hhhHHHhhhcCCCceEEEcCChHHHHhhcCCceEEcCCCceEEeCcccCCceEEEEEecCccCCCC--CCCccEEEEEec
Q 018490 160 LKTLKPLSKMSPNLKVIATPNAKTLLDPLFQNVTYVEPGQSSEIEGRNGSKLRVKATAGPVLGPPW--QRPENGYLVNSS 237 (355)
Q Consensus 160 ~~tl~~l~~~~~~~~v~~~~~~~~~l~~~~~~v~~l~~~e~~~l~~~~~~~l~i~~~pa~~~g~~~--~~~~~g~~i~~~ 237 (355)
..+++.+. .++..+.++++++++ +++|+++++.+..... ....++|+|+.+
T Consensus 52 ~~~l~~~~----------------------~~~~vv~~~~~~~~~-----~~~i~~v~~~~~~~~~~~~~~~~~~~i~~~ 104 (163)
T PF13483_consen 52 PETLKRLD----------------------RDIHVVAPGGEYRFG-----GFKITAVPAYHDGPGGHPRGENVGYLIEVG 104 (163)
T ss_dssp CCCCCCHH----------------------TSSEEE-TTEEEECT-----TEEEEEEEEEE-STGTS-TTCCEEEEEEET
T ss_pred hhHhhhcc----------------------cccEEEccceEEEEe-----eeEEEEEeeeccccCCCCcCCeEEEEEEeC
Confidence 77765552 334555567888997 8999999988642211 123579999997
Q ss_pred CCceeEEEcCCCCCCc---ccccccCCcEEEEccccccCCCceeccCHHHHHHHHHHcCCCEEEEec
Q 018490 238 QGQLTLYYEPHCVYNQ---NFLEKERSDIIITPVIKQLLPKFTLVSGQEDAVKLAKLLHAKFIVPMK 301 (355)
Q Consensus 238 ~~~~~i~~sGDt~~~~---~~~~~~~~Dl~~l~~g~~~~~~~~~h~~~~ea~~~~~~l~~k~~ip~H 301 (355)
|.+|||.||++... .+.+.+++|++++++++ .+ .|++++|+++++.++||++||+|
T Consensus 105 --g~~i~~~Gd~~~~~~~~~~~~~~~vDvl~~p~~g----~~--~~~~~~a~~~~~~l~pk~viP~H 163 (163)
T PF13483_consen 105 --GVTIYHAGDTGFPPDDEQLKQLGKVDVLFLPVGG----PF--TMGPEEAAELAERLKPKLVIPMH 163 (163)
T ss_dssp --TEEEEE-TT--S---HHHHHHH-S-SEEEEE--T----TT--S--HHHHHHHHHHCT-SEEEEES
T ss_pred --CCEEEEECCCccCCCHHHHhcccCCCEEEecCCC----Cc--ccCHHHHHHHHHHcCCCEEEeCC
Confidence 79999999999743 34455699999999987 22 45999999999999999999999
No 6
>PF12706 Lactamase_B_2: Beta-lactamase superfamily domain; PDB: 3BV6_F 1WW1_A 2E7Y_A 3RPC_D 3ZWF_A 3JXP_A 1XTO_A 2CBN_A 3G1P_B 3P2U_A ....
Probab=99.83 E-value=5e-20 Score=163.09 Aligned_cols=152 Identities=24% Similarity=0.370 Sum_probs=117.2
Q ss_pred CCCCCcCEEEecCCCCCC-CChhhHHHhhhcCCCceEEEcCChHHHHh--hcC----------CceEEcCCCceEEeCcc
Q 018490 140 SDLPQVDCLLITQSLDDH-CHLKTLKPLSKMSPNLKVIATPNAKTLLD--PLF----------QNVTYVEPGQSSEIEGR 206 (355)
Q Consensus 140 ~~lp~iD~VlISH~H~DH-ld~~tl~~l~~~~~~~~v~~~~~~~~~l~--~~~----------~~v~~l~~~e~~~l~~~ 206 (355)
++++++|+|+|||.|+|| +++.++.......++ ++|+++...+.++ .++ .++.++..++.++++
T Consensus 25 ~~~~~id~v~iTH~H~DH~~gl~~l~~~~~~~~~-~i~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-- 101 (194)
T PF12706_consen 25 EDLPDIDAVFITHSHPDHIAGLPSLIPAWAKHPK-PIYGPPETKEFLREYKFGILDLYPEEDNFDIIEISPGDEFEIG-- 101 (194)
T ss_dssp SSSGCEEEEE-SBSSHHHHTTHHHHHHHHHHCTT-EEEECHHHHHHHHHHHHTHHTTCCTTSGEEEEEECTTEEEEET--
T ss_pred cccCCCCEEEECCCCccccCChHHHHHHhhcccc-eEEecHHHHHHHHhhhcccccccccccceeEEEeccCceEEec--
Confidence 355699999999999999 777777776655444 8999998888777 432 357888889889997
Q ss_pred cCCceEEEEEecCccCCCCCCCccEEEEEecCCceeEEEcCCCCCCcccccccCCcEEEEccccccCC-----CceeccC
Q 018490 207 NGSKLRVKATAGPVLGPPWQRPENGYLVNSSQGQLTLYYEPHCVYNQNFLEKERSDIIITPVIKQLLP-----KFTLVSG 281 (355)
Q Consensus 207 ~~~~l~i~~~pa~~~g~~~~~~~~g~~i~~~~~~~~i~~sGDt~~~~~~~~~~~~Dl~~l~~g~~~~~-----~~~~h~~ 281 (355)
+++|+++|+.|.......+. ||+|+.+ +.+|+|+||+.+ .+.++.++|+++++++..... ....|++
T Consensus 102 ---~~~i~~~~~~H~~~~~~~~~-g~~i~~~--~~~i~~~gD~~~--~~~~~~~~D~li~~~~~~~~~~~~~~~~~~h~~ 173 (194)
T PF12706_consen 102 ---DFRITPFPANHGPPSYGGNK-GFVIEPD--GKKIFYSGDTNY--DFEELKNIDLLILECGYIDEEEEPPARGPGHMT 173 (194)
T ss_dssp ---TEEEEEEEEESSSCCEEECC-EEEEEET--TEEEEEETSSSS--CHHHHTTBSEEEEEBCBSSGGHHCHHCCTTSBB
T ss_pred ---eEEEEEEeccccccccccCc-eEEEecC--CcceEEeeccch--hhhhhccCCEEEEeCCCcchhhcccccCCCCCC
Confidence 89999999987532110000 3999987 789999999999 354556899999999753211 2246999
Q ss_pred HHHHHHHHHHcCCCEEEEecc
Q 018490 282 QEDAVKLAKLLHAKFIVPMKN 302 (355)
Q Consensus 282 ~~ea~~~~~~l~~k~~ip~H~ 302 (355)
.++++++++++++|+++++||
T Consensus 174 ~~~~~~~~~~~~~~~~il~H~ 194 (194)
T PF12706_consen 174 LEEALELAKELKAKKVILIHF 194 (194)
T ss_dssp HHHHHHHHHHHTTSEEEEESB
T ss_pred HHHHHHHHHHcCCCEEEEECC
Confidence 999999999999999999997
No 7
>TIGR02651 RNase_Z ribonuclease Z. Processing of the 3-prime end of tRNA precursors may be the result of endonuclease or exonuclease activity, and differs in different species. Member of this family are ribonuclease Z, a tRNA 3-prime endonuclease that processes tRNAs to prepare for addition of CCA. In species where all tRNA sequences already have the CCA tail, such as E. coli, the need for such an enzyme is unclear. Protein similar to the E. coli enzyme, matched by TIGR02649, are designated ribonuclease BN.
Probab=99.82 E-value=4.9e-19 Score=168.09 Aligned_cols=213 Identities=19% Similarity=0.140 Sum_probs=145.6
Q ss_pred cCcEEEEEeCCeEEEEccccCCCCCCCcccccccCccccchhhhhhhccccCCCCCCCCCcCEEEecCCCCCCCChhhHH
Q 018490 85 EGNSWLWDLDGVKVLVDPILVGNLDFGIPWLFDAGKKFLKSFQIVLIGMKTLVQLSDLPQVDCLLITQSLDDHCHLKTLK 164 (355)
Q Consensus 85 Ghss~li~~~g~~iLiDP~~sg~~~~p~~~~~~g~~~r~~~~~~~~~g~~~~~~~~~lp~iD~VlISH~H~DHld~~tl~ 164 (355)
+++|++|+.++.+||||+ |... .+++.. ..+ ++.++|+|||||.|.||+ .++.
T Consensus 17 ~~~~~~v~~~~~~iLiD~---G~g~----------~~~l~~---------~~~---~~~~i~~IfiTH~H~DH~--~Gl~ 69 (299)
T TIGR02651 17 NLPSIALKLNGELWLFDC---GEGT----------QRQMLR---------SGI---SPMKIDRIFITHLHGDHI--LGLP 69 (299)
T ss_pred CCceEEEEECCeEEEEEC---CHHH----------HHHHHH---------cCC---CHHHCcEEEEECCchhhh--cChH
Confidence 468999999999999999 5322 011111 111 234799999999999996 4444
Q ss_pred Hhhh------cCCCceEEEcCChHHHHhhc--------C--CceEEcCCCc-eEEeCcccCCceEEEEEecCccCCCCCC
Q 018490 165 PLSK------MSPNLKVIATPNAKTLLDPL--------F--QNVTYVEPGQ-SSEIEGRNGSKLRVKATAGPVLGPPWQR 227 (355)
Q Consensus 165 ~l~~------~~~~~~v~~~~~~~~~l~~~--------~--~~v~~l~~~e-~~~l~~~~~~~l~i~~~pa~~~g~~~~~ 227 (355)
.+.. +...++||+++.....++.. . .++.++.+++ .+..+ +++|+++|..|..+
T Consensus 70 ~l~~~~~~~~~~~~i~Iy~p~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-----~~~v~~~~~~H~~~---- 140 (299)
T TIGR02651 70 GLLSTMSFQGRKEPLTIYGPPGIKEFIETSLRVSYTYLNYPIKIHEIEEGGLVFEDD-----GFKVEAFPLDHSIP---- 140 (299)
T ss_pred HHHHhhccCCCCceEEEECCccHHHHHHHHHHHcccCCCceEEEEEccCCCceEecC-----CEEEEEEEcCCCCc----
Confidence 4321 11257788888876665542 1 2467888887 47776 89999999887421
Q ss_pred CccEEEEEecC------------------------------------------------CceeEEEcCCCCCCccccccc
Q 018490 228 PENGYLVNSSQ------------------------------------------------GQLTLYYEPHCVYNQNFLEKE 259 (355)
Q Consensus 228 ~~~g~~i~~~~------------------------------------------------~~~~i~~sGDt~~~~~~~~~~ 259 (355)
..||+|+.++ .+.+++|+|||++.+.+.+..
T Consensus 141 -~~gy~i~~~~~~~~~~~~k~~~~~l~~g~~~~~L~~g~~v~~~~G~~~~~~~~~~~~~~g~~i~y~gDt~~~~~~~~~~ 219 (299)
T TIGR02651 141 -SLGYRFEEKDRPGKFDREKAKELGIPPGPLYGKLKRGETVTLIDGRIIDPEDVLGPPRKGRKIAYTGDTRPCEEVIEFA 219 (299)
T ss_pred -eEEEEEEECCCCCCcCHHHHHHCCCCcchhHHHhhCCCeEEeCCCeEEeHHHcccCCcCCcEEEEecCCCChHHHHHHH
Confidence 3588887531 146899999999988776653
Q ss_pred -CCcEEEEccccccC-CC---ceeccCHHHHHHHHHHcCCCEEEEeccCCccccccccccccccCCHHHHHHHHHhcCCC
Q 018490 260 -RSDIIITPVIKQLL-PK---FTLVSGQEDAVKLAKLLHAKFIVPMKNGDLDSKGFLASIIQSEGTVESFKELLSKELPD 334 (355)
Q Consensus 260 -~~Dl~~l~~g~~~~-~~---~~~h~~~~ea~~~~~~l~~k~~ip~H~~~f~~~g~l~~~~~~~~~~~~~~~~~~~~~~~ 334 (355)
++|++++++.-... .. ...|++++||++++++.++++++.+|++.- +.. .+++.+.+++...+
T Consensus 220 ~~~dlLi~E~~~~~~~~~~~~~~~H~t~~~a~~~~~~~~~k~lvltH~s~~-----------~~~-~~~~~~~~~~~~~~ 287 (299)
T TIGR02651 220 KNADLLIHEATFLDEDKKLAKEYGHSTAAQAAEIAKEANVKRLILTHISPR-----------YSD-EEELLEEAKKIFPN 287 (299)
T ss_pred cCCCEEEEECCCCchhHHHHhhcCCCCHHHHHHHHHHcCCCEEEEEecccc-----------cCC-hHHHHHHHHHhCCC
Confidence 89999999852110 01 135999999999999999999999999852 122 45565555554334
Q ss_pred CeEeccCCCCeEEc
Q 018490 335 AQLLEPTPGEPLEI 348 (355)
Q Consensus 335 ~~~~~p~~Ge~~~l 348 (355)
+....+|+++++
T Consensus 288 --~~~a~dg~~~~~ 299 (299)
T TIGR02651 288 --TYIAEDFMEIEI 299 (299)
T ss_pred --cEEccCccEeeC
Confidence 444559998864
No 8
>PRK11244 phnP carbon-phosphorus lyase complex accessory protein; Provisional
Probab=99.82 E-value=1.2e-18 Score=161.54 Aligned_cols=176 Identities=18% Similarity=0.202 Sum_probs=124.3
Q ss_pred CcEEEEEeCCeEEEEccccCCCCCCCcccccccCccccchhhhhhhccccCCCCCCCCCcCEEEecCCCCCCCChhhHHH
Q 018490 86 GNSWLWDLDGVKVLVDPILVGNLDFGIPWLFDAGKKFLKSFQIVLIGMKTLVQLSDLPQVDCLLITQSLDDHCHLKTLKP 165 (355)
Q Consensus 86 hss~li~~~g~~iLiDP~~sg~~~~p~~~~~~g~~~r~~~~~~~~~g~~~~~~~~~lp~iD~VlISH~H~DHld~~tl~~ 165 (355)
.+|++|+.++..||||| |... + .. .+.. .++|+|||||.|.||+ .++..
T Consensus 37 ~~s~li~~~~~~iLiD~---G~~~-----~--------~~----------~~~~---~~i~~i~iTH~H~DHi--~gl~~ 85 (250)
T PRK11244 37 PCSALIEFNGARTLIDA---GLPD-----L--------AE----------RFPP---GSLQQILLTHYHMDHV--QGLFP 85 (250)
T ss_pred eeEEEEEECCCEEEEEC---CChH-----H--------hh----------cCCc---ccCCEEEEccCchhhh--ccHHH
Confidence 46899999999999999 4211 1 00 0112 3799999999999996 44544
Q ss_pred hhh-cCCCceEEEcCChHH---HHhhcC-Cce-EEcCCCceEEeCcccCCceEEEEEecCccCCCCCCCccEEEEEecCC
Q 018490 166 LSK-MSPNLKVIATPNAKT---LLDPLF-QNV-TYVEPGQSSEIEGRNGSKLRVKATAGPVLGPPWQRPENGYLVNSSQG 239 (355)
Q Consensus 166 l~~-~~~~~~v~~~~~~~~---~l~~~~-~~v-~~l~~~e~~~l~~~~~~~l~i~~~pa~~~g~~~~~~~~g~~i~~~~~ 239 (355)
+.. +.+++++|+++.... .++..+ .+. .++++++.++++ +++|+++|..|+.+ ..||+|+.+
T Consensus 86 l~~~~~~~i~i~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~-----~~~I~~~~~~H~~~-----s~g~~i~~~-- 153 (250)
T PRK11244 86 LRWGVGDPIPVYGPPDPEGCDDLFKHPGILDFSHPLEPFEPFDLG-----GLQVTPLPLNHSKL-----TFGYLLETA-- 153 (250)
T ss_pred HHhhcCCceeEEeCCchhhHHHHhcCccccccccccCCCCCeeEC-----CEEEEEEeeCCCcc-----eeEEEEecC--
Confidence 422 123678898876432 222111 122 458889999997 89999999887522 469999987
Q ss_pred ceeEEEcCCCCCCc-ccccc---cCCcEEEEccccccCC-CceeccCHHHHHHHHHHcCCCEEEEeccCC
Q 018490 240 QLTLYYEPHCVYNQ-NFLEK---ERSDIIITPVIKQLLP-KFTLVSGQEDAVKLAKLLHAKFIVPMKNGD 304 (355)
Q Consensus 240 ~~~i~~sGDt~~~~-~~~~~---~~~Dl~~l~~g~~~~~-~~~~h~~~~ea~~~~~~l~~k~~ip~H~~~ 304 (355)
+.+++|+|||++.. .+.+. .++|++++++...... ....|+++++++++++.+++++++++|++.
T Consensus 154 ~~~i~ysgDt~~~~~~~~~~~~~~~~Dlli~e~~~~~~~~~~~~H~~~~~a~~~a~~~~~k~lvltH~~~ 223 (250)
T PRK11244 154 HSRVAYLTDTVGLPEDTLKFLRNNQPDLLVLDCSHPPQEDAPRNHNDLTTALAIIEVLRPPRVILTHISH 223 (250)
T ss_pred CeEEEEEcCCCCCCHHHHHHHhcCCCCEEEEeCcCCCCCCCCCCCCCHHHHHHHHHhcCCceEEEEcccC
Confidence 68999999998753 34332 4799999998531110 123499999999999999999999999964
No 9
>PRK02113 putative hydrolase; Provisional
Probab=99.81 E-value=3.2e-18 Score=158.71 Aligned_cols=174 Identities=18% Similarity=0.231 Sum_probs=125.2
Q ss_pred CcEEEEEeCCeEEEEccccCCCCCCCcccccccCccccchhhhhhhccccCCCCCCCCCcCEEEecCCCCCCCC-hhhHH
Q 018490 86 GNSWLWDLDGVKVLVDPILVGNLDFGIPWLFDAGKKFLKSFQIVLIGMKTLVQLSDLPQVDCLLITQSLDDHCH-LKTLK 164 (355)
Q Consensus 86 hss~li~~~g~~iLiDP~~sg~~~~p~~~~~~g~~~r~~~~~~~~~g~~~~~~~~~lp~iD~VlISH~H~DHld-~~tl~ 164 (355)
.+|++|+.+|.+||||+ |... . . .+. ..++.++|+|||||.|+||+. +..+.
T Consensus 35 ~~s~li~~~~~~iLiD~---G~g~---~-------~---~l~-----------~~~~~~id~I~lTH~H~DH~~gl~~l~ 87 (252)
T PRK02113 35 RTSALVETEGARILIDC---GPDF---R-------E---QML-----------RLPFGKIDAVLITHEHYDHVGGLDDLR 87 (252)
T ss_pred eeEEEEEECCeEEEEEC---CchH---H-------H---HHH-----------hcCccccCEEEECCCChhhhCCHHHHH
Confidence 47899999999999999 6321 0 0 110 013458999999999999962 33343
Q ss_pred HhhhcCCCceEEEcCChHHHHhhcC--------------CceEEcCCCceEEeCcccCCceEEEEEecCccCCCCCCCcc
Q 018490 165 PLSKMSPNLKVIATPNAKTLLDPLF--------------QNVTYVEPGQSSEIEGRNGSKLRVKATAGPVLGPPWQRPEN 230 (355)
Q Consensus 165 ~l~~~~~~~~v~~~~~~~~~l~~~~--------------~~v~~l~~~e~~~l~~~~~~~l~i~~~pa~~~g~~~~~~~~ 230 (355)
.+... .+++||+++...+.+++.. .+++++++++.++++ +++|++++..|... ...
T Consensus 88 ~~~~~-~~~~i~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~-----~~~i~~~~~~H~~~----~~~ 157 (252)
T PRK02113 88 PFCRF-GEVPIYAEQYVAERLRSRMPYCFVEHSYPGVPNIPLREIEPDRPFLVN-----HTEVTPLRVMHGKL----PIL 157 (252)
T ss_pred HhccC-CCceEEECHHHHHHHHhhCCeeeccCCCCCCcceeeEEcCCCCCEEEC-----CeEEEEEEecCCCc----cEE
Confidence 33222 3688999987776665431 247888899999997 89999998876411 135
Q ss_pred EEEEEecCCceeEEEcCCCCCCc-ccccc-cCCcEEEEccccccCCCceeccCHHHHHHHHHHcCCCEEEEeccCC
Q 018490 231 GYLVNSSQGQLTLYYEPHCVYNQ-NFLEK-ERSDIIITPVIKQLLPKFTLVSGQEDAVKLAKLLHAKFIVPMKNGD 304 (355)
Q Consensus 231 g~~i~~~~~~~~i~~sGDt~~~~-~~~~~-~~~Dl~~l~~g~~~~~~~~~h~~~~ea~~~~~~l~~k~~ip~H~~~ 304 (355)
||.+ + ++.|+||+.+.+ ...+. .+.|++++++.. ......|++++|++++++++++|+++.+|++.
T Consensus 158 gy~i--~----~i~y~~Dt~~~~~~~~~~~~~~DlLi~e~~~--~~~~~~H~t~~~a~~~~~~~~~k~l~l~H~s~ 225 (252)
T PRK02113 158 GYRI--G----KMAYITDMLTMPEEEYEQLQGIDVLVMNALR--IAPHPTHQSLEEALENIKRIGAKETYLIHMSH 225 (252)
T ss_pred EEEe--C----CEEEccCCCCCCHHHHHHhcCCCEEEEhhhc--CCCCCCcCCHHHHHHHHHHhCCCEEEEEcccc
Confidence 8888 2 699999998643 33332 489999999732 21223699999999999999999999999974
No 10
>PRK00055 ribonuclease Z; Reviewed
Probab=99.79 E-value=2.1e-18 Score=160.88 Aligned_cols=225 Identities=17% Similarity=0.127 Sum_probs=136.1
Q ss_pred eEEEEec-----------CcEEEEEeCCeEEEEccccCCCCCCCcccccccCccccchhhhhhhccccCCCCCCCCCcCE
Q 018490 79 FKLTYLE-----------GNSWLWDLDGVKVLVDPILVGNLDFGIPWLFDAGKKFLKSFQIVLIGMKTLVQLSDLPQVDC 147 (355)
Q Consensus 79 ~~itwlG-----------hss~li~~~g~~iLiDP~~sg~~~~p~~~~~~g~~~r~~~~~~~~~g~~~~~~~~~lp~iD~ 147 (355)
|+|+.|| .+|++|+.++.++|||+ |... . +++.. ..+ ++.++|+
T Consensus 2 m~i~~LGsg~~~~~~~r~~~~~li~~~~~~iLiD~---G~g~--~--------~~l~~---------~~~---~~~~i~~ 56 (270)
T PRK00055 2 MELTFLGTGSGVPTPTRNVSSILLRLGGELFLFDC---GEGT--Q--------RQLLK---------TGI---KPRKIDK 56 (270)
T ss_pred eEEEEEecCCCCCcCCCCCCEEEEEECCcEEEEEC---CHHH--H--------HHHHH---------cCC---CHHHCCE
Confidence 6777777 78999999999999999 6322 0 11111 111 2347999
Q ss_pred EEecCCCCCCCChhhHHHhhh------cCCCceEEEcCChHHHHhhc---C----CceEEcCCCceEE--------eCc-
Q 018490 148 LLITQSLDDHCHLKTLKPLSK------MSPNLKVIATPNAKTLLDPL---F----QNVTYVEPGQSSE--------IEG- 205 (355)
Q Consensus 148 VlISH~H~DHld~~tl~~l~~------~~~~~~v~~~~~~~~~l~~~---~----~~v~~l~~~e~~~--------l~~- 205 (355)
|+|||.|.||+ .++..|.. +...++||+++.....++.. . ..+.+-+....+. +..
T Consensus 57 i~lTH~H~DHi--~Gl~~l~~~~~~~~~~~~l~iy~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 134 (270)
T PRK00055 57 IFITHLHGDHI--FGLPGLLSTRSLSGRTEPLTIYGPKGIKEFVETLLRASGSLGYRIAEKDKPGKLDAEKLKALGVPPG 134 (270)
T ss_pred EEEeCCCchhh--CcHHHHHHHhhhcCCCceEEEECCccHHHHHHHHHHHhhceeEEEEEcCCCCCCCHHHHHHCCCCCC
Confidence 99999999996 55544431 12357789888766655432 0 0111100000000 000
Q ss_pred ----ccCCceEEEEEecCccCCCCCCCccEEEEEecCCceeEEEcCCCCCCccccccc-CCcEEEEccccccCCC-----
Q 018490 206 ----RNGSKLRVKATAGPVLGPPWQRPENGYLVNSSQGQLTLYYEPHCVYNQNFLEKE-RSDIIITPVIKQLLPK----- 275 (355)
Q Consensus 206 ----~~~~~l~i~~~pa~~~g~~~~~~~~g~~i~~~~~~~~i~~sGDt~~~~~~~~~~-~~Dl~~l~~g~~~~~~----- 275 (355)
....+.++........ ....+|.++.+ +.+++|+|||++.+.+.+.. ++|++++++.- ..+.
T Consensus 135 ~~~~~~~~g~~~~~~~~~~i-----~~~~~~~~~~~--g~~~~y~~Dt~~~~~~~~~~~~~d~li~E~~~-~~~~~~~~~ 206 (270)
T PRK00055 135 PLFGKLKRGEDVTLEDGRII-----NPADVLGPPRK--GRKVAYCGDTRPCEALVELAKGADLLVHEATF-GDEDEELAK 206 (270)
T ss_pred chHHHhhCCCeEEeCCCcEE-----eHHHeeccCCC--CcEEEEeCCCCCcHHHHHHhCCCCEEEEeccC-CcchhhHHh
Confidence 0000111111000000 01247777766 67999999999988766544 89999999852 1111
Q ss_pred ceeccCHHHHHHHHHHcCCCEEEEeccCCccccccccccccccCCHHHHHHHHHhcCCCCeEeccCCCCeEEcCCC
Q 018490 276 FTLVSGQEDAVKLAKLLHAKFIVPMKNGDLDSKGFLASIIQSEGTVESFKELLSKELPDAQLLEPTPGEPLEIPAP 351 (355)
Q Consensus 276 ~~~h~~~~ea~~~~~~l~~k~~ip~H~~~f~~~g~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~Ge~~~l~~~ 351 (355)
...|++++|+++++++++++.++++|++.- +....+++.+.+++... .+..+.+|+++++..+
T Consensus 207 ~~~H~~~~~a~~~~~~~~~~~~vl~H~~~~-----------~~~~~~~~~~~~~~~~~--~v~~a~Dg~~i~l~~~ 269 (270)
T PRK00055 207 EYGHSTARQAAEIAKEAGVKRLILTHFSPR-----------YTGDPEELLKEAREIFP--NTELAEDLMRVEVPFR 269 (270)
T ss_pred hcCCCCHHHHHHHHHHcCCCEEEEEeeccc-----------cCCCHHHHHHHHHHHcC--CcEEccCCcEEEecCC
Confidence 235999999999999999999999999752 12246666666665433 4455669999998543
No 11
>TIGR02649 true_RNase_BN ribonuclease BN. Members of this protein family are ribonuclease BN of Escherichia coli K-12 and closely related proteins believed to be equivalent in function. Note that E. coli appears to lack RNase Z per se, and this protein of E. coli appears orthologous to (but not functionally equivalent to) RNase Z of Bacillus subtilis and various other species. Meanwhile, the yihY gene product of E. coli previously was incorrectly identified as RNase BN.
Probab=99.78 E-value=1.4e-17 Score=158.69 Aligned_cols=213 Identities=13% Similarity=0.055 Sum_probs=145.7
Q ss_pred cCcEEEEEeC----CeEEEEccccCCCCCCCcccccccCccccchhhhhhhccccCCCCCCCCCcCEEEecCCCCCCCCh
Q 018490 85 EGNSWLWDLD----GVKVLVDPILVGNLDFGIPWLFDAGKKFLKSFQIVLIGMKTLVQLSDLPQVDCLLITQSLDDHCHL 160 (355)
Q Consensus 85 Ghss~li~~~----g~~iLiDP~~sg~~~~p~~~~~~g~~~r~~~~~~~~~g~~~~~~~~~lp~iD~VlISH~H~DHld~ 160 (355)
+.+|++|+.+ +.++|||+ |... .+++.. ..+ ++.++|+|||||.|.||+
T Consensus 16 ~~s~~lv~~~~~~~~~~iLiD~---G~g~----------~~~l~~---------~~i---~~~~id~IfiTH~H~DHi-- 68 (303)
T TIGR02649 16 NVTAILLNLQHPTQSGLWLFDC---GEGT----------QHQLLH---------TAF---NPGKLDKIFISHLHGDHL-- 68 (303)
T ss_pred CccEEEEEccCCCCCCEEEEEC---CccH----------HHHHHH---------hCC---CHHHCcEEEEeCCChhhc--
Confidence 4689999975 37899999 6432 011111 112 234899999999999996
Q ss_pred hhHHHhh------hcCCCceEEEcCChHHHHhhc----------CCceEEcCCCceEEeCcccCCceEEEEEecCccCCC
Q 018490 161 KTLKPLS------KMSPNLKVIATPNAKTLLDPL----------FQNVTYVEPGQSSEIEGRNGSKLRVKATAGPVLGPP 224 (355)
Q Consensus 161 ~tl~~l~------~~~~~~~v~~~~~~~~~l~~~----------~~~v~~l~~~e~~~l~~~~~~~l~i~~~pa~~~g~~ 224 (355)
.++..|. .+..+++||+++...+.++.. ..+++++..++.+..+ +++|+++|..|..
T Consensus 69 ~Gl~~ll~~~~~~~~~~~l~Iygp~~~~~~l~~~~~~~~~~~~~~~~~~~i~~~~~~~~~-----~~~v~~~~~~H~~-- 141 (303)
T TIGR02649 69 FGLPGLLCSRSMSGIIQPLTIYGPQGIREFVETALRISGSWTDYPLEIVEIGAGEILDDG-----LRKVTAYPLEHPL-- 141 (303)
T ss_pred CCHHHHHHHHHhcCCCCCeEEEechhHHHHHHHHHHhcccccCCceEEEEcCCCceEecC-----CeEEEEEEccCcc--
Confidence 4444332 111357899998876655432 1245777777777765 7999999887632
Q ss_pred CCCCccEEEEEecC------------------------------------------------CceeEEEcCCCCCCcccc
Q 018490 225 WQRPENGYLVNSSQ------------------------------------------------GQLTLYYEPHCVYNQNFL 256 (355)
Q Consensus 225 ~~~~~~g~~i~~~~------------------------------------------------~~~~i~~sGDt~~~~~~~ 256 (355)
...||+|+..+ .+.+|.|+|||++.+.+.
T Consensus 142 ---~~~gy~i~~~~~~g~~~~~kl~~lgi~~g~~~~~L~~g~~v~~~dg~~~~~~~~~~~~~~g~~i~y~gDt~~~~~~~ 218 (303)
T TIGR02649 142 ---ECYGYRIEEHDKPGALNAQALKAAGVPPGPLFQELKAGKTITLEDGRQINGADYLAAPVPGKALAIFGDTGPCDAAL 218 (303)
T ss_pred ---ceEEEEEeccCCcCCCCHHHHHHCCCCCChHHHHhcCCCeEEeCCCcEEcHHHeeCCCCCCcEEEEecCCCChHHHH
Confidence 23588887521 257899999999987766
Q ss_pred ccc-CCcEEEEccccccCC------CceeccCHHHHHHHHHHcCCCEEEEeccCCccccccccccccccCCHHHHHHHHH
Q 018490 257 EKE-RSDIIITPVIKQLLP------KFTLVSGQEDAVKLAKLLHAKFIVPMKNGDLDSKGFLASIIQSEGTVESFKELLS 329 (355)
Q Consensus 257 ~~~-~~Dl~~l~~g~~~~~------~~~~h~~~~ea~~~~~~l~~k~~ip~H~~~f~~~g~l~~~~~~~~~~~~~~~~~~ 329 (355)
+.. +.|++++++. +.. .-..|++.+||+++++++++|+++.+|++... . .+..+++.++++
T Consensus 219 ~~~~~adlLi~Eat--~~~~~~~~a~~~~H~t~~~a~~~a~~~~~k~lvL~H~s~~y---------~-~~~~~~~~~~~~ 286 (303)
T TIGR02649 219 DLAKGVDVMVHEAT--LDITMEAKANSRGHSSTRQAATLAREAGVGKLIITHVSSRY---------D-DKGCQHLLRECR 286 (303)
T ss_pred HHhcCCCEEEEecc--CChhhHHHHhhcCCCCHHHHHHHHHHcCCCEEEEEEecccc---------C-CccHHHHHHHHH
Confidence 544 9999999984 221 11249999999999999999999999997532 1 234566666666
Q ss_pred hcCCCCeEeccCCCCeEEc
Q 018490 330 KELPDAQLLEPTPGEPLEI 348 (355)
Q Consensus 330 ~~~~~~~~~~p~~Ge~~~l 348 (355)
+...++ ..+++|+++.+
T Consensus 287 ~~~~~~--~~a~d~~~~~~ 303 (303)
T TIGR02649 287 SIFPAT--ELANDFTVFNV 303 (303)
T ss_pred HHCCCC--EecccccEEeC
Confidence 654444 45669998864
No 12
>TIGR03307 PhnP phosphonate metabolism protein PhnP. This family of proteins found in operons encoding phosphonate C-P lyase systems as is observed in E. coli and is a member of the metallo-beta-lactamase superfamily (pfam00753). As defined by this model, all instances of this protein are associated with the C-P lyase, but not all genomes containing the C-P lyase system contain phnP.
Probab=99.77 E-value=1.9e-17 Score=152.41 Aligned_cols=176 Identities=17% Similarity=0.157 Sum_probs=123.4
Q ss_pred CcEEEEEeCCeEEEEccccCCCCCCCcccccccCccccchhhhhhhccccCCCCCCCCCcCEEEecCCCCCCCChhhHHH
Q 018490 86 GNSWLWDLDGVKVLVDPILVGNLDFGIPWLFDAGKKFLKSFQIVLIGMKTLVQLSDLPQVDCLLITQSLDDHCHLKTLKP 165 (355)
Q Consensus 86 hss~li~~~g~~iLiDP~~sg~~~~p~~~~~~g~~~r~~~~~~~~~g~~~~~~~~~lp~iD~VlISH~H~DHld~~tl~~ 165 (355)
.+|++|+.+|..||||+ |... + .. .+.. .++|+|||||.|.||+ .++..
T Consensus 27 ~~s~~i~~~~~~iliD~---G~~~-----~--------~~----------~~~~---~~id~i~iTH~H~DHi--~gl~~ 75 (238)
T TIGR03307 27 PCSAVIEFNGARTLIDA---GLTD-----L--------AE----------RFPP---GSLQAILLTHYHMDHV--QGLFP 75 (238)
T ss_pred ceEEEEEECCcEEEEEC---CChh-----H--------hh----------ccCc---cCCCEEEEecCchhhh--cchHH
Confidence 36789999999999999 4211 1 00 0112 3789999999999997 34433
Q ss_pred hhhc-CCCceEEEcCChHH---HHhhcC-Cce-EEcCCCceEEeCcccCCceEEEEEecCccCCCCCCCccEEEEEecCC
Q 018490 166 LSKM-SPNLKVIATPNAKT---LLDPLF-QNV-TYVEPGQSSEIEGRNGSKLRVKATAGPVLGPPWQRPENGYLVNSSQG 239 (355)
Q Consensus 166 l~~~-~~~~~v~~~~~~~~---~l~~~~-~~v-~~l~~~e~~~l~~~~~~~l~i~~~pa~~~g~~~~~~~~g~~i~~~~~ 239 (355)
+... ..+++||+++.... .++..+ .+. .++.+++.++++ +++|+++|+.|... ..||+|+.+
T Consensus 76 l~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-----~~~i~~~~~~H~~~-----~~g~~i~~~-- 143 (238)
T TIGR03307 76 LRWGVGEPIPVYGPPDEEGCDDLFKHPGILDFSKPLEAFEPFDLG-----GLRVTPLPLVHSKL-----TFGYLLETD-- 143 (238)
T ss_pred HHHhcCCceeEEeCchHhhHHHHhcCcccccccccccCCceEEEC-----CEEEEEEecCCCCc-----ceEEEEecC--
Confidence 3221 13688998876432 222112 122 347888899997 89999999887532 369999976
Q ss_pred ceeEEEcCCCCCCc-ccccc---cCCcEEEEccccccCC-CceeccCHHHHHHHHHHcCCCEEEEeccCC
Q 018490 240 QLTLYYEPHCVYNQ-NFLEK---ERSDIIITPVIKQLLP-KFTLVSGQEDAVKLAKLLHAKFIVPMKNGD 304 (355)
Q Consensus 240 ~~~i~~sGDt~~~~-~~~~~---~~~Dl~~l~~g~~~~~-~~~~h~~~~ea~~~~~~l~~k~~ip~H~~~ 304 (355)
+.+++|+||+++.+ .+.+. .++|+++++++..... ....|++++|++++++.+++++++.+|++.
T Consensus 144 ~~~i~y~gDt~~~~~~~~~~~~~~~~D~li~e~~~~~~~~~~~~H~~~~~~~~~~~~~~~~~lil~H~~~ 213 (238)
T TIGR03307 144 GQRVAYLTDTAGLPPDTEAFLKNHPLDVLILDCSHPPQSDAPRNHNDLTRALAINEQLRPKQVILTHISH 213 (238)
T ss_pred CcEEEEEecCCCCCHHHHHHHhcCCCCEEEEeCCcCccccCCCCcCCHHHHHHHHHHcCCCEEEEEeccc
Confidence 67999999998743 33332 2799999998631111 123599999999999999999999999964
No 13
>PRK05184 pyrroloquinoline quinone biosynthesis protein PqqB; Provisional
Probab=99.69 E-value=2.3e-15 Score=143.33 Aligned_cols=222 Identities=15% Similarity=0.123 Sum_probs=137.4
Q ss_pred CcEEEEEeCC-eEEEEccccCCCCCCCcccccccCccccchhhhhhhccccCCCCC---CCCCcCEEEecCCCCCCCChh
Q 018490 86 GNSWLWDLDG-VKVLVDPILVGNLDFGIPWLFDAGKKFLKSFQIVLIGMKTLVQLS---DLPQVDCLLITQSLDDHCHLK 161 (355)
Q Consensus 86 hss~li~~~g-~~iLiDP~~sg~~~~p~~~~~~g~~~r~~~~~~~~~g~~~~~~~~---~lp~iD~VlISH~H~DHld~~ 161 (355)
.+|++|+.+| .+||||+ |+... . ++..+ ..+.+. .+.++|+|||||.|+||+ .
T Consensus 39 ~ss~li~~~g~~~iLiD~---G~g~~-~---------ql~~~--------~~~~~~~g~~~~~ldav~lTH~H~DHi--~ 95 (302)
T PRK05184 39 QSSIAVSADGEDWVLLNA---SPDIR-Q---------QIQAT--------PALQPARGLRDTPIAAVVLTDGQIDHT--T 95 (302)
T ss_pred ccEEEEEcCCCEEEEEEC---ChhHH-H---------HHHhc--------hhcCccccCCcccccEEEEeCCchhhh--h
Confidence 5789998866 4699999 64320 0 11111 001111 334799999999999995 6
Q ss_pred hHHHhhhcCCCceEEEcCChHHHHhhc---C--------CceEEcCCCceEEeCcccCCceEEEEEecCccCCCC-----
Q 018490 162 TLKPLSKMSPNLKVIATPNAKTLLDPL---F--------QNVTYVEPGQSSEIEGRNGSKLRVKATAGPVLGPPW----- 225 (355)
Q Consensus 162 tl~~l~~~~~~~~v~~~~~~~~~l~~~---~--------~~v~~l~~~e~~~l~~~~~~~l~i~~~pa~~~g~~~----- 225 (355)
++..|... .+++||+++.+.+.+++. + .+++++..++.++++. .++++|+++|..|.-+.|
T Consensus 96 Gl~~l~~~-~~l~Vyg~~~~~~~l~~~~~~f~~~~~~~~~~~~~i~~~~~~~i~~--~~~~~Vt~~~v~H~~~~~~~~~~ 172 (302)
T PRK05184 96 GLLTLREG-QPFPVYATPAVLEDLSTGFPIFNVLDHYGGVQRRPIALDGPFAVPG--LPGLRFTAFPVPSKAPPYSPHRS 172 (302)
T ss_pred ChHhhccC-CCeEEEeCHHHHHHHHhcCCcccccccccceeeEEecCCCceEecC--CCCcEEEEEEcCCCCCccccccc
Confidence 67666554 378999999887766653 1 1356677777777730 126999999887642111
Q ss_pred --C-CCccEEEEE--ecCCceeEEEcCCC-CCCcccccc-cCCcEEEEccccccC----------C--CceeccCH---H
Q 018490 226 --Q-RPENGYLVN--SSQGQLTLYYEPHC-VYNQNFLEK-ERSDIIITPVIKQLL----------P--KFTLVSGQ---E 283 (355)
Q Consensus 226 --~-~~~~g~~i~--~~~~~~~i~~sGDt-~~~~~~~~~-~~~Dl~~l~~g~~~~----------~--~~~~h~~~---~ 283 (355)
+ ....||+|+ .+ +++++|++|+ .+.+.+.+. .+.|++++++.-+.. . ....||+. .
T Consensus 173 ~~h~~~~~gyri~~~~~--g~~~~y~tD~~~~~~~~~~~~~gaDlli~da~~~~~~~~~~~g~~~~~~~~~~H~~~~~~~ 250 (302)
T PRK05184 173 DPEPGDNIGLRIEDRAT--GKRLFYAPGLAEVTDALRARLAGADCVLFDGTLWTDDEMIRAGVGTKTGRRMGHLPQSGPG 250 (302)
T ss_pred CCCCCCeEEEEEEecCC--CcEEEEECCCCCCCHHHHHHHhcCCEEEEeCCCCcCHHHHhcccCccccccCCCCCCCChH
Confidence 1 124599996 43 6788888665 666665544 389999999842111 0 12248875 4
Q ss_pred HHHHHHHHcCCCEEEEeccCCccccccccccccccCCHHHHHHHHHhcCCCCeEeccCCCCeEEc
Q 018490 284 DAVKLAKLLHAKFIVPMKNGDLDSKGFLASIIQSEGTVESFKELLSKELPDAQLLEPTPGEPLEI 348 (355)
Q Consensus 284 ea~~~~~~l~~k~~ip~H~~~f~~~g~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~Ge~~~l 348 (355)
++++.+...++|+++.+|...-. . .|.+..+ .++.+.+ .++.+.. +|+++++
T Consensus 251 ~~l~~~~~~~~k~l~ltHl~h~~-----~---~~~~~~~-~~~~~~~--~~~~~A~--DGm~i~l 302 (302)
T PRK05184 251 GMIAALARLPIARKILIHINNTN-----P---ILDEDSP-ERAELEA--AGIEVAH--DGMEIEL 302 (302)
T ss_pred HHHHHhhcCCCCcEEEEEcCCCC-----h---hhccCCH-HHHHHHh--CCCEEcc--CCcEEeC
Confidence 56777777889999999987321 0 1122211 1222232 3566655 9998875
No 14
>COG1234 ElaC Metal-dependent hydrolases of the beta-lactamase superfamily III [General function prediction only]
Probab=99.63 E-value=6.2e-15 Score=139.56 Aligned_cols=222 Identities=18% Similarity=0.163 Sum_probs=136.9
Q ss_pred eEEEEecC-----------cEEEEEeCCeEEEEccccCCCCCCCcccccccCccccchhhhhhhccccCCCCCCCCCcCE
Q 018490 79 FKLTYLEG-----------NSWLWDLDGVKVLVDPILVGNLDFGIPWLFDAGKKFLKSFQIVLIGMKTLVQLSDLPQVDC 147 (355)
Q Consensus 79 ~~itwlGh-----------ss~li~~~g~~iLiDP~~sg~~~~p~~~~~~g~~~r~~~~~~~~~g~~~~~~~~~lp~iD~ 147 (355)
|+|++||. ++++|+.+|..+|+|| |.++. +++.. ..+.+ .++|+
T Consensus 2 m~i~fLGtg~~~Pt~~r~~~s~ll~~~~~~~L~Dc---GeGt~----------~~l~~---------~~~~~---~~i~~ 56 (292)
T COG1234 2 MEITFLGTGGAVPTKDRNVSSILLRLEGEKFLFDC---GEGTQ----------HQLLR---------AGLPP---RKIDA 56 (292)
T ss_pred cEEEEEecCCCCCcCccccceeEEEeCCeeEEEEC---CHhHH----------HHHHH---------hcCCh---hhccE
Confidence 57777774 6899999999999999 65441 11111 11112 27999
Q ss_pred EEecCCCCCCC-ChhhHHHhh---hcCCCceEEEcCChHHHHhhcC----------CceEEcCCCceEEeCcccCCceEE
Q 018490 148 LLITQSLDDHC-HLKTLKPLS---KMSPNLKVIATPNAKTLLDPLF----------QNVTYVEPGQSSEIEGRNGSKLRV 213 (355)
Q Consensus 148 VlISH~H~DHl-d~~tl~~l~---~~~~~~~v~~~~~~~~~l~~~~----------~~v~~l~~~e~~~l~~~~~~~l~i 213 (355)
|+|||.|.||+ ++.++.... .+.....+|.++.....++.+. ..++++.. + .+++
T Consensus 57 IfITH~H~DHi~gL~~ll~~~~~~~~~~~l~iygP~g~~~~~~~~~~~~~~~~~~~i~~~e~~~-~----------~~~v 125 (292)
T COG1234 57 IFITHLHGDHIAGLPGLLVSRSFRGRREPLKIYGPPGIKEFVETSLRLSYSKLTYEIIGHEIEE-D----------AFEV 125 (292)
T ss_pred EEeeccccchhcCcHHHHHHhhccCCCCceeEECCcchhhhhhhhhhhcccccceEEEEEEecc-C----------ceEE
Confidence 99999999996 233322221 1222467888877666555441 12333321 1 1222
Q ss_pred EEEecCcc---------------------------CCCC------CCCc-----cEEEEEecCCceeEEEcCCCCCCccc
Q 018490 214 KATAGPVL---------------------------GPPW------QRPE-----NGYLVNSSQGQLTLYYEPHCVYNQNF 255 (355)
Q Consensus 214 ~~~pa~~~---------------------------g~~~------~~~~-----~g~~i~~~~~~~~i~~sGDt~~~~~~ 255 (355)
.+....|. +..+ +..+ .++++.....|.+|.|+|||.++..+
T Consensus 126 ~~~~~~h~~~~~~y~~~e~~~~~~~~~~~~~~~~~g~~~~~l~~~h~~~~~~~~~~~~~~~~~~G~~v~ysGDT~p~~~~ 205 (292)
T COG1234 126 EALELDHGVPALGYRIEEPDRPGRFDAEKLKGLPPGPLITALKAGHPVEERVITPADRIGEPRKGKSVVYSGDTRPCDEL 205 (292)
T ss_pred EEEecCCCccccceeeecCCCcCcCCHHHhcCCCCchHHHHHhCCCceeeeecCHHHhccccCCCcEEEEECCCCCCHHH
Confidence 22211111 0000 0000 12233333335899999999999988
Q ss_pred cccc-CCcEEEEccccccCC----CceeccCHHHHHHHHHHcCCCEEEEeccCCccccccccccccccCCHHHHHHHHHh
Q 018490 256 LEKE-RSDIIITPVIKQLLP----KFTLVSGQEDAVKLAKLLHAKFIVPMKNGDLDSKGFLASIIQSEGTVESFKELLSK 330 (355)
Q Consensus 256 ~~~~-~~Dl~~l~~g~~~~~----~~~~h~~~~ea~~~~~~l~~k~~ip~H~~~f~~~g~l~~~~~~~~~~~~~~~~~~~ 330 (355)
.+.. +.||++.++.-.... ....|++.+||++++++.++|.+|.+|+.... ....+++.+.+++
T Consensus 206 ~~~a~~aDlLiHEat~~~~~~~~a~~~~HsT~~eAa~iA~~A~vk~LiLtH~s~ry-----------~~~~~~~~~ea~~ 274 (292)
T COG1234 206 IDLAKGADLLIHEATFEDDLEDLANEGGHSTAEEAAEIAKEAGVKKLILTHFSPRY-----------PKDDEELLKEARA 274 (292)
T ss_pred HHHhcCCCEEEEeccCCchhhhHHhhcCCCCHHHHHHHHHHcCCCeEEEEeecccc-----------cchHHHHHHHHHH
Confidence 7765 999999998421111 11139999999999999999999999998632 1356667677776
Q ss_pred cCCCCeEeccCCCCeEEc
Q 018490 331 ELPDAQLLEPTPGEPLEI 348 (355)
Q Consensus 331 ~~~~~~~~~p~~Ge~~~l 348 (355)
..++ ++..+++|+++++
T Consensus 275 ~f~~-~~~~a~D~~~~~v 291 (292)
T COG1234 275 IFPG-ETIVARDGLVFEV 291 (292)
T ss_pred hCCC-ceEEeccceEEec
Confidence 6556 6666779998876
No 15
>TIGR02108 PQQ_syn_pqqB coenzyme PQQ biosynthesis protein B. This model describes coenzyme PQQ biosynthesis protein B, a gene required for the biosynthesis of pyrrolo-quinoline-quinone (coenzyme PQQ). PQQ is required for some glucose dehydrogenases and alcohol dehydrogenases. Note that this gene appears to be required for PQQ in biosynthesis in Methylobacterium extorquens (under the name pqqG) and in Klebiella pneumoniae but that the equivalent pqqV in Acinetobacter calcoaceticus is not necessary for heterologous expression of PQQ biosynthesis in E. coli. Based on this latter finding, it is suggested (Goosen, et al. 1989) that PqqB might be a transporter or a PQQ-dependent enzyme rather than a PQQ biosynthesis enzyme.
Probab=99.61 E-value=3.5e-14 Score=134.96 Aligned_cols=190 Identities=12% Similarity=0.079 Sum_probs=120.3
Q ss_pred CCcCEEEecCCCCCCCChhhHHHhhhcCCCceEEEcCChHHHHhhc--C-------CceEEcCCCceEEeCcccCCceEE
Q 018490 143 PQVDCLLITQSLDDHCHLKTLKPLSKMSPNLKVIATPNAKTLLDPL--F-------QNVTYVEPGQSSEIEGRNGSKLRV 213 (355)
Q Consensus 143 p~iD~VlISH~H~DHld~~tl~~l~~~~~~~~v~~~~~~~~~l~~~--~-------~~v~~l~~~e~~~l~~~~~~~l~i 213 (355)
.+||+|||||.|+||+ .+|..|.++. +++||+++.+.+.|++. + .+...+..++.+.+.....++++|
T Consensus 78 ~~IdaI~lTH~H~DHi--~GL~~L~~~~-~lpVya~~~t~~~L~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~g~~I 154 (302)
T TIGR02108 78 TPIAGVVLTDGEIDHT--TGLLTLREGQ-PFTLYATEMVLQDLSDNPIFNVLDHWNVRRQPIALNEKFEFRIVARPGLEF 154 (302)
T ss_pred ccCCEEEEeCCCcchh--hCHHHHcCCC-CceEEECHHHHHHHHhCCCccccchhhccceEecCCCcEEecccccCCEEE
Confidence 4799999999999995 6777776553 79999999988877542 1 112455666677664111125999
Q ss_pred EEEecCcc------C---CCCCCCccEEEEEecCCceeEEEcCCCCCCc-ccccc-cCCcEEEEccccccC---------
Q 018490 214 KATAGPVL------G---PPWQRPENGYLVNSSQGQLTLYYEPHCVYNQ-NFLEK-ERSDIIITPVIKQLL--------- 273 (355)
Q Consensus 214 ~~~pa~~~------g---~~~~~~~~g~~i~~~~~~~~i~~sGDt~~~~-~~~~~-~~~Dl~~l~~g~~~~--------- 273 (355)
+++|..|. + +.-.....||+|+.++.+++++|++|+++.+ .+.+. .+.|++++++.-++.
T Consensus 155 ~~f~v~h~~~~~~~H~~~d~~~~~~~Gy~i~~~~~g~~~~y~tD~g~~~~~~~~~l~~~d~liida~~~~d~e~l~~g~y 234 (302)
T TIGR02108 155 TPFAVPGKAPLYSEHRAGDPHPGDTLGLKIEDGTTGKRLFYIPGCAEITDDLKARMAGADLVFFDGTLWRDDEMIRAGVG 234 (302)
T ss_pred EEEEcCCCCCccccccccCCCCCCcEEEEEEeCCCCcEEEEECCCCCCCHHHHHHHhCCCEEEEeCCCCCcHHHHhcCCC
Confidence 99998754 2 1101134699998752247999999998543 44333 389999999851011
Q ss_pred C---CceeccCHH---HHHHHHHHcCCCEEEEeccCCccccccccccccccCCHHHHHHHHHhcCCCCeEeccCCCCeEE
Q 018490 274 P---KFTLVSGQE---DAVKLAKLLHAKFIVPMKNGDLDSKGFLASIIQSEGTVESFKELLSKELPDAQLLEPTPGEPLE 347 (355)
Q Consensus 274 ~---~~~~h~~~~---ea~~~~~~l~~k~~ip~H~~~f~~~g~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~Ge~~~ 347 (355)
| +...|++.+ |+++.+...++++++.+|.+.-.. +. + +-....+.+.+ .++.+.. +|+.++
T Consensus 235 pri~~~~gHls~~~~~~al~~~~~~~~~~~~l~Hl~h~~~---~~-----~-~~~~~~~~~~~--~~~~~ay--DG~~~~ 301 (302)
T TIGR02108 235 TKTGRRMGHVSMSGEGGSLAVLADLEIARKVLIHINNTNP---IL-----D-EDSPERAEVEA--AGWEVAY--DGMEIV 301 (302)
T ss_pred CCcCCCCCCCCccchHHHHHHhhcCCCCcEEEEecCCCCc---CC-----C-CCCHHHHHHHH--cCCEEec--CCcEEe
Confidence 1 112376665 666666667899999999975210 11 1 11111233333 3577777 999886
Q ss_pred c
Q 018490 348 I 348 (355)
Q Consensus 348 l 348 (355)
+
T Consensus 302 l 302 (302)
T TIGR02108 302 L 302 (302)
T ss_pred C
Confidence 4
No 16
>PRK04286 hypothetical protein; Provisional
Probab=99.60 E-value=1.8e-14 Score=136.90 Aligned_cols=194 Identities=13% Similarity=0.129 Sum_probs=108.2
Q ss_pred CcEEEEEeCCeEEEEccccCC-CC--CC-CcccccccCccccchhhhhhhccccCCCCCCCCCcCEEEecCCCCCCCChh
Q 018490 86 GNSWLWDLDGVKVLVDPILVG-NL--DF-GIPWLFDAGKKFLKSFQIVLIGMKTLVQLSDLPQVDCLLITQSLDDHCHLK 161 (355)
Q Consensus 86 hss~li~~~g~~iLiDP~~sg-~~--~~-p~~~~~~g~~~r~~~~~~~~~g~~~~~~~~~lp~iD~VlISH~H~DHld~~ 161 (355)
++|++|+.++.+|||||+.+- .. .. |.+.. .+++.... ..+ .+.+.++|+|||||.|+||++.-
T Consensus 15 ~~~~~I~~~~~~iLID~G~~~~~~~~~~~~~~~~----~~~~~~~~-------~~i-~~~~~~id~IliTH~H~DHi~g~ 82 (298)
T PRK04286 15 SMATFVETKDVRILIDPGVSLAPRRYGLPPHPIE----LERLEEVR-------EKI-LEYAKKADVITISHYHYDHHTPF 82 (298)
T ss_pred eeEEEEEECCeEEEEcCCCCcCccccCCCCcchh----HHHHHHHH-------HHh-hcccccCCEEEecCCccccCCCc
Confidence 489999999999999996431 00 00 11111 01111110 111 24566899999999999998422
Q ss_pred hHHHh---hhcCCCceEEEcCChHH-----------HHhhc--------CCceEEcCCCceEEeCcccCCceEEEEE-ec
Q 018490 162 TLKPL---SKMSPNLKVIATPNAKT-----------LLDPL--------FQNVTYVEPGQSSEIEGRNGSKLRVKAT-AG 218 (355)
Q Consensus 162 tl~~l---~~~~~~~~v~~~~~~~~-----------~l~~~--------~~~v~~l~~~e~~~l~~~~~~~l~i~~~-pa 218 (355)
....+ .++. ++++|....... ..+.. ......+..++.+.++ +++|+++ |.
T Consensus 83 ~~~~y~~~~~~~-~i~iy~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~g~~~~ig-----~~~V~~~~~v 156 (298)
T PRK04286 83 YEDPYELSDEEI-PKEIYKGKIVLIKDPTENINWSQRRRAPRFLKAVKDIAKKIEYADGKTFRFG-----GTTIEFSPPV 156 (298)
T ss_pred cccccccccccc-hHHHhcCceecccCHHHHcCHHHHhhHHhHHHHHHhcCCceEECCCCEEEEC-----CEEEEEeccC
Confidence 21100 1111 233333222110 11011 0134567778888887 8999866 54
Q ss_pred CccCCCCCCCccEE----EEEecCCceeEEEcCCCC--CCcccccc---cCCcEEEEccccccC--CCc---eeccCHHH
Q 018490 219 PVLGPPWQRPENGY----LVNSSQGQLTLYYEPHCV--YNQNFLEK---ERSDIIITPVIKQLL--PKF---TLVSGQED 284 (355)
Q Consensus 219 ~~~g~~~~~~~~g~----~i~~~~~~~~i~~sGDt~--~~~~~~~~---~~~Dl~~l~~g~~~~--~~~---~~h~~~~e 284 (355)
.|... ....|| .|+.+ +.+++|+||++ +.....+. .++|++++.+--.+. .+. ..|+..++
T Consensus 157 ~H~~~---~~~~Gy~i~~ri~~g--g~~~~~~gDt~~~~~~~~~~~l~~~d~dlLi~~~~p~~lk~~ri~~~~~h~s~~~ 231 (298)
T PRK04286 157 PHGAD---GSKLGYVIMVRISDG--DESFVFASDVQGPLNDEAVEFILEKKPDVVIIGGPPTYLLGRRLSEEDLEKGIEN 231 (298)
T ss_pred CCCCC---CCccceEEEEEEEeC--CEEEEEECCCCCCCCHHHHHHHhcCCCCEEEeCCcchhhhhhhhccccHHHHHHH
Confidence 45321 012344 44554 78999999999 44444332 289999986521122 121 23666666
Q ss_pred HHHHHHHcCCCEEEEeccC
Q 018490 285 AVKLAKLLHAKFIVPMKNG 303 (355)
Q Consensus 285 a~~~~~~l~~k~~ip~H~~ 303 (355)
+.++++. ++|+++.+|+-
T Consensus 232 ~~~l~~~-~~k~liLtHHl 249 (298)
T PRK04286 232 LEEIVKN-TPETLILDHHL 249 (298)
T ss_pred HHHHHhc-CCCEEEEeccc
Confidence 6666666 99999999553
No 17
>PRK02126 ribonuclease Z; Provisional
Probab=99.59 E-value=7.1e-14 Score=134.66 Aligned_cols=180 Identities=16% Similarity=0.204 Sum_probs=119.9
Q ss_pred EEecCcEEEEEe--CCeEEEEccccCCCCCCCcccccccCccccchhhhhhhccccCCCCCCCCCcCEEEecCCCCCCCC
Q 018490 82 TYLEGNSWLWDL--DGVKVLVDPILVGNLDFGIPWLFDAGKKFLKSFQIVLIGMKTLVQLSDLPQVDCLLITQSLDDHCH 159 (355)
Q Consensus 82 twlGhss~li~~--~g~~iLiDP~~sg~~~~p~~~~~~g~~~r~~~~~~~~~g~~~~~~~~~lp~iD~VlISH~H~DHld 159 (355)
.-+..+|++|.. +|.++|||| |. . +++. ..++.++|+|||||.|+||+
T Consensus 12 g~~~dn~~~l~~~~~~~~iLiD~---G~-~-----------~~l~--------------~~~~~~i~~I~iTH~H~DHi- 61 (334)
T PRK02126 12 GPFDDPGLYVDFLFERRALLFDL---GD-L-----------HHLP--------------PRELLRISHIFVSHTHMDHF- 61 (334)
T ss_pred CCCCCcEEEEEECCCCeEEEEcC---CC-H-----------HHHh--------------hcCCCccCEEEEcCCChhHh-
Confidence 346778888886 489999999 63 1 0010 13455899999999999996
Q ss_pred hhhHHHhhhc----CCCceEEEcCChHHHHhhcC--------------CceEEcC-------------------------
Q 018490 160 LKTLKPLSKM----SPNLKVIATPNAKTLLDPLF--------------QNVTYVE------------------------- 196 (355)
Q Consensus 160 ~~tl~~l~~~----~~~~~v~~~~~~~~~l~~~~--------------~~v~~l~------------------------- 196 (355)
.++..|... .+.+++|+++.+...++... ..+..+.
T Consensus 62 -~Gl~~l~~~~~~r~~~l~iygp~~~~~~l~~~~~~y~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 140 (334)
T PRK02126 62 -IGFDRLLRHCLGRPRRLRLFGPPGFADQVEHKLAGYTWNLVENYPTTFRVHEVELHDGRIRRALFSCRRAFAREAEEEL 140 (334)
T ss_pred -CcHHHHHHHhccCCCCeEEEECHHHHHHHHHHhccccccCcccCCCceEEEEEEccCccceeeeecccccccccccccc
Confidence 444444322 23679999988776554421 1222221
Q ss_pred ---CCceEEeCcccCCceEEEEEecCccCCCCCCCccEEEEEec------------------------------------
Q 018490 197 ---PGQSSEIEGRNGSKLRVKATAGPVLGPPWQRPENGYLVNSS------------------------------------ 237 (355)
Q Consensus 197 ---~~e~~~l~~~~~~~l~i~~~pa~~~g~~~~~~~~g~~i~~~------------------------------------ 237 (355)
.+..++. ++++|+++|..|.-+ ..||+|+.+
T Consensus 141 ~~~~~~~~~~-----~~~~V~a~~~~H~vp-----~~gy~~~e~~~~~~~~ek~~~~gi~~g~~~~~Lk~~~~~~~~~~~ 210 (334)
T PRK02126 141 SLPDGVLLDE-----PWFRVRAAFLDHGIP-----CLAFALEEKAHINIDKNRLAELGLPPGPWLRELKHAVLRGEPDDT 210 (334)
T ss_pred cCCCCeEEeC-----CCEEEEEEEccCCCc-----eeEEEEEecCCcCcCHHHHHHcCCCCChHHHHHHhhhhccCCCCc
Confidence 1111222 389999998887422 236666531
Q ss_pred -----------------------------CCceeEEEcCCCCCCcc----cccc-cCCcEEEEccccccCC------Cce
Q 018490 238 -----------------------------QGQLTLYYEPHCVYNQN----FLEK-ERSDIIITPVIKQLLP------KFT 277 (355)
Q Consensus 238 -----------------------------~~~~~i~~sGDt~~~~~----~~~~-~~~Dl~~l~~g~~~~~------~~~ 277 (355)
..+.+|.|+|||++.+. +.+. .+.|++++++. +.. ...
T Consensus 211 ~v~~~~~~g~~~~~~~~~~~~~~~~~~~~~~g~~v~y~gDT~~~~~~~~~l~~~a~~aDlLI~Eat--~~~~~~~~a~~~ 288 (334)
T PRK02126 211 PIRVLWRDGGGEHERVRPLGELKERVLRIEPGQKIGYVTDIGYTEENLARIVELAAGVDLLFIEAV--FLDEDAEKARRK 288 (334)
T ss_pred eEEeeccCCCccceeEecHHHHHHHhccCCCCCEEEEECCCCCCcccHHHHHHHHcCCCEEEEEcc--cChHHhhhcccC
Confidence 02568999999999864 3342 38999999984 221 113
Q ss_pred eccCHHHHHHHHHHcCCCEEEEeccCC
Q 018490 278 LVSGQEDAVKLAKLLHAKFIVPMKNGD 304 (355)
Q Consensus 278 ~h~~~~ea~~~~~~l~~k~~ip~H~~~ 304 (355)
.|+++++|+++++..+++.++.+|++.
T Consensus 289 gH~t~~~a~~lA~~a~vk~LvLtH~sp 315 (334)
T PRK02126 289 NHLTARQAGRLAREAGVKRLLPFHFSP 315 (334)
T ss_pred CCCCHHHHHHHHHHcCCCEEEEEecCc
Confidence 599999999999999999999999985
No 18
>TIGR00649 MG423 conserved hypothetical protein. Contains an ATP-binding domain at the N-terminal end of the protein. Possibly part of a superfamily of beta-lactmases
Probab=99.54 E-value=1.7e-13 Score=136.42 Aligned_cols=191 Identities=14% Similarity=0.159 Sum_probs=123.1
Q ss_pred cCcEEEEEeCCeEEEEccccCCCCCCCcccccccCccccch-hhhhhhccccCCCCCCCCCcCEEEecCCCCCCCChhhH
Q 018490 85 EGNSWLWDLDGVKVLVDPILVGNLDFGIPWLFDAGKKFLKS-FQIVLIGMKTLVQLSDLPQVDCLLITQSLDDHCHLKTL 163 (355)
Q Consensus 85 Ghss~li~~~g~~iLiDP~~sg~~~~p~~~~~~g~~~r~~~-~~~~~~g~~~~~~~~~lp~iD~VlISH~H~DHld~~tl 163 (355)
|.||++|+.++..||||+ |... +-.-+. +. ..+-| +. .+ .+...++|+|+|||.|.|| .+++
T Consensus 13 G~n~~ll~~~~~~iliD~---G~~~-~~~~~~-g~-~~~iPd~~--------~l-~~~~~~i~~I~iTH~H~DH--iggl 75 (422)
T TIGR00649 13 GKNMYVVEIDDDVFIFDA---GILF-PEDAML-GV-DGVIPDFS--------YL-QENQDKVKGIFITHGHEDH--IGAV 75 (422)
T ss_pred CCeEEEEEECCeEEEEeC---CCCC-Cccccc-CC-ccccCCHH--------HH-HhccccCCEEEECCCChHH--hCcH
Confidence 578999999999999999 4221 100000 00 00000 00 00 0112489999999999999 4788
Q ss_pred HHhhhcCCCceEEEcCChHHHHhhc----C----CceEEcCCCceEEeCcccCCceEEEEEecCccCCCCCCCccEEEEE
Q 018490 164 KPLSKMSPNLKVIATPNAKTLLDPL----F----QNVTYVEPGQSSEIEGRNGSKLRVKATAGPVLGPPWQRPENGYLVN 235 (355)
Q Consensus 164 ~~l~~~~~~~~v~~~~~~~~~l~~~----~----~~v~~l~~~e~~~l~~~~~~~l~i~~~pa~~~g~~~~~~~~g~~i~ 235 (355)
..|.+..+.+++|+++.+...++.. + .++.+++.++.++++ ++++|+++++.|+.+ ...||.++
T Consensus 76 ~~l~~~~~~~~Vy~~~~t~~~l~~~~~~~~~~~~~~~~~~~~~~~~~ig----~~~~v~~~~~~H~~p----~s~g~~i~ 147 (422)
T TIGR00649 76 PYLFHTVGFPPIYGTPLTIALIKSKIKENKLNVRTDLLEIHEGEPIETG----ENHTIEFIRITHSIP----DSVGFALH 147 (422)
T ss_pred HHHHHhCCCCeEEeCHHHHHHHHHHHHhcCCCCCCceEEeCCCCEEEeC----CceEEEEEECCCCCc----ceEEEEEE
Confidence 8777655346899998877655431 1 346788899999995 259999999887422 23689998
Q ss_pred ecCCceeEEEcCCCCCCc--------c---cccc--cCCcEEEEccccccCCCce--eccCHHHHHHHHHHcCCCEEEEe
Q 018490 236 SSQGQLTLYYEPHCVYNQ--------N---FLEK--ERSDIIITPVIKQLLPKFT--LVSGQEDAVKLAKLLHAKFIVPM 300 (355)
Q Consensus 236 ~~~~~~~i~~sGDt~~~~--------~---~~~~--~~~Dl~~l~~g~~~~~~~~--~h~~~~ea~~~~~~l~~k~~ip~ 300 (355)
++ +.+++|+||+.+.. + +.+. .++|++++++.....+.+. -|...+++.+.+++.+.+ ++.+
T Consensus 148 ~~--~~~ivytGD~~~~~~~~~~~~~d~~~l~~~~~~g~d~Li~EsT~~~~~~~~~~e~~~~~~i~~~~~~~~~~-viv~ 224 (422)
T TIGR00649 148 TP--LGYIVYTGDFKFDNTPVIGEPPDLNRIAEYGKKGVLLLISDSTNVENPGFTPSEAKVLEQLNDIFKNAKGR-VIVA 224 (422)
T ss_pred eC--CcEEEECCCcCCCCCccCCcccCHHHHHhhcccCeEEEEECCCCCCCCCCCCCHHHHHHHHHHHHHhCCCE-EEEE
Confidence 87 46899999997631 1 2222 2689999998632223222 255566677777665544 7778
Q ss_pred ccC
Q 018490 301 KNG 303 (355)
Q Consensus 301 H~~ 303 (355)
|+.
T Consensus 225 ~fa 227 (422)
T TIGR00649 225 TFA 227 (422)
T ss_pred Ecc
Confidence 876
No 19
>TIGR03675 arCOG00543 arCOG00543 universal archaeal KH-domain/beta-lactamase-domain protein. This family of proteins is universal in the archaea and consistsof an N-terminal type-1 KH-domain (pfam00013) a central beta-lactamase-domain (pfam00753) with a C-terminal motif associated with RNA metabolism (pfam07521). KH-domains are associated with RNA-binding, so taken together, this protein is a likely metal-dependent RNAase. This family was defined in as arCOG01782.
Probab=99.46 E-value=2.6e-12 Score=133.04 Aligned_cols=192 Identities=16% Similarity=0.186 Sum_probs=120.1
Q ss_pred CCceEEEEecC------cEEEEEeCCeEEEEccccCCCCCCCcccccccCccccchhhhhhhccccCCCC--CCCCCcCE
Q 018490 76 TDVFKLTYLEG------NSWLWDLDGVKVLVDPILVGNLDFGIPWLFDAGKKFLKSFQIVLIGMKTLVQL--SDLPQVDC 147 (355)
Q Consensus 76 ~~~~~itwlGh------ss~li~~~g~~iLiDP~~sg~~~~p~~~~~~g~~~r~~~~~~~~~g~~~~~~~--~~lp~iD~ 147 (355)
.+.|+|+.||. ||++|+.++.+||+||.+.. . .... ..+ +.+.. .++.++|+
T Consensus 172 ~~~m~i~~LGg~~eVG~Sc~Ll~~~~~~ILIDcG~~~-~---~~~~--------~~~--------p~l~~~~~~~~~IDa 231 (630)
T TIGR03675 172 DRWVRVTALGGFREVGRSALLLSTPESRILLDCGVNV-G---ANGD--------NAY--------PYLDVPEFQLDELDA 231 (630)
T ss_pred CCeEEEEEEecCCccCCCEEEEEECCCEEEEECCCCc-c---ccch--------hhc--------ccccccCCCHHHCcE
Confidence 34589999975 89999999999999995431 1 0000 000 01111 12458999
Q ss_pred EEecCCCCCCCChhhHHHhhhcCCCceEEEcCChHHHHh----h-------cC--------------CceEEcCCCceEE
Q 018490 148 LLITQSLDDHCHLKTLKPLSKMSPNLKVIATPNAKTLLD----P-------LF--------------QNVTYVEPGQSSE 202 (355)
Q Consensus 148 VlISH~H~DHld~~tl~~l~~~~~~~~v~~~~~~~~~l~----~-------~~--------------~~v~~l~~~e~~~ 202 (355)
|||||.|.||+ +.+..|.+...+.+||+++.+.+.++ . .+ .+...++.++.+.
T Consensus 232 VlITHaH~DHi--G~LP~L~k~g~~gpIY~T~pT~~l~~~ll~D~~~i~~~~g~~~~y~~~dv~~~~~~~~~l~yg~~~~ 309 (630)
T TIGR03675 232 VVITHAHLDHS--GLVPLLFKYGYDGPVYCTPPTRDLMTLLQLDYIDVAQREGKKPPYSSKDVREALKHTITLDYGEVTD 309 (630)
T ss_pred EEECCCCHHHH--hhHHHHHHhCCCCceeecHHHHHHHHHHHHHHHHHHHhcCCCCCCCHHHHHHHHhccEEeCCCCeEE
Confidence 99999999995 78887765423678999886544211 0 01 2467888999888
Q ss_pred eCcccCCceEEEEEecCccCCCCCCCccEEEEEecCCceeEEEcCCCCCCcc--cc----cccCCcEEEEccccccCCCc
Q 018490 203 IEGRNGSKLRVKATAGPVLGPPWQRPENGYLVNSSQGQLTLYYEPHCVYNQN--FL----EKERSDIIITPVIKQLLPKF 276 (355)
Q Consensus 203 l~~~~~~~l~i~~~pa~~~g~~~~~~~~g~~i~~~~~~~~i~~sGDt~~~~~--~~----~~~~~Dl~~l~~g~~~~~~~ 276 (355)
+. +++++++.++-|+- ..+.+.++..+++.+|+|+||.++... +. ...++|+++++.. |-..-
T Consensus 310 i~----~~i~vt~~~AGHil-----Gsa~~~~~i~dg~~~IvYTGD~~~~~~~ll~~a~~~~~~vD~LI~EST--Yg~~~ 378 (630)
T TIGR03675 310 IA----PDIKLTFYNAGHIL-----GSAIAHLHIGDGLYNIVYTGDFKYEKTRLLDPAVNKFPRVETLIMEST--YGGRD 378 (630)
T ss_pred ec----CCEEEEEecCcccc-----CceEEEEEECCCCEEEEEeCCCCCCCCcCccchhhcCCCCCEEEEeCc--cCCCC
Confidence 85 37999998876641 123455665443579999999988542 11 1237999999984 21111
Q ss_pred eeccCHHHHH----HHHHH---cCCCEEEEe
Q 018490 277 TLVSGQEDAV----KLAKL---LHAKFIVPM 300 (355)
Q Consensus 277 ~~h~~~~ea~----~~~~~---l~~k~~ip~ 300 (355)
..|...+++. +.+++ -+.+.+||+
T Consensus 379 ~~~~~r~~~e~~l~~~I~~tl~~gG~VLIP~ 409 (630)
T TIGR03675 379 DYQPSREEAEKELIKVVNETIKRGGKVLIPV 409 (630)
T ss_pred CCCCCHHHHHHHHHHHHHHHHhCCCEEEEEe
Confidence 1233333332 22222 266788887
No 20
>smart00849 Lactamase_B Metallo-beta-lactamase superfamily. Apart from the beta-lactamases a number of other proteins contain this domain PUBMED:7588620. These proteins include thiolesterases, members of the glyoxalase II family, that catalyse the hydrolysis of S-D-lactoyl-glutathione to form glutathione and D-lactic acid and a competence protein that is essential for natural transformation in Neisseria gonorrhoeae and could be a transporter involved in DNA uptake. Except for the competence protein these proteins bind two zinc ions per molecule as cofactor.
Probab=99.40 E-value=2.5e-12 Score=111.81 Aligned_cols=168 Identities=17% Similarity=0.162 Sum_probs=108.9
Q ss_pred EEecCcEEEEEeCCeEEEEccccCCCCCCCcccccccCccccchhhhhhhccccCCCCCCCCCcCEEEecCCCCCCCChh
Q 018490 82 TYLEGNSWLWDLDGVKVLVDPILVGNLDFGIPWLFDAGKKFLKSFQIVLIGMKTLVQLSDLPQVDCLLITQSLDDHCHLK 161 (355)
Q Consensus 82 twlGhss~li~~~g~~iLiDP~~sg~~~~p~~~~~~g~~~r~~~~~~~~~g~~~~~~~~~lp~iD~VlISH~H~DHld~~ 161 (355)
.+.+++|++|+.++..+||||..+. . ... +..+. . . ...++|+|+|||.|.|| .+
T Consensus 2 ~~~~~~~~li~~~~~~iliD~g~~~-~---~~~--------~~~l~--------~--~-~~~~i~~i~iTH~H~DH--~~ 56 (183)
T smart00849 2 GGVGVNSYLVEGDGGAILIDTGPGE-A---EDL--------LAELK--------K--L-GPKDIDAIILTHGHPDH--IG 56 (183)
T ss_pred CccceeEEEEEeCCceEEEeCCCCh-h---HHH--------HHHHH--------H--c-CchhhcEEEecccCcch--hc
Confidence 3678999999999999999994321 1 001 01111 0 1 13489999999999999 47
Q ss_pred hHHHhhhcCCCceEEEcCChHHHHhhc-------------CCceEEcCCCceEEeCcccCCceEEEEEecC-ccCCCCCC
Q 018490 162 TLKPLSKMSPNLKVIATPNAKTLLDPL-------------FQNVTYVEPGQSSEIEGRNGSKLRVKATAGP-VLGPPWQR 227 (355)
Q Consensus 162 tl~~l~~~~~~~~v~~~~~~~~~l~~~-------------~~~v~~l~~~e~~~l~~~~~~~l~i~~~pa~-~~g~~~~~ 227 (355)
++..+.+. +++++|+++...+.+++. ..++..++.++++.++ +.+++.++.. |+ .
T Consensus 57 g~~~~~~~-~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-----~~~~~~~~~~~h~----~- 125 (183)
T smart00849 57 GLPELLEA-PGAPVYAPEGTAELLKDLLKLGGALGAEAPPPPPDRTLKDGEELDLG-----GLELEVIHTPGHT----P- 125 (183)
T ss_pred cHHHHHhC-CCCcEEEchhhhHHHhccchhccccCcCCCCCccceecCCCCEEEeC-----CceEEEEECCCCC----C-
Confidence 77777665 488999888887766531 2457778889999997 5666666552 11 0
Q ss_pred CccEEEEEecCCceeEEEcCCCCCCcccccccCCcEEEEccccccCCCceeccCHHHHHHHHHHcCCCEEEEec
Q 018490 228 PENGYLVNSSQGQLTLYYEPHCVYNQNFLEKERSDIIITPVIKQLLPKFTLVSGQEDAVKLAKLLHAKFIVPMK 301 (355)
Q Consensus 228 ~~~g~~i~~~~~~~~i~~sGDt~~~~~~~~~~~~Dl~~l~~g~~~~~~~~~h~~~~ea~~~~~~l~~k~~ip~H 301 (355)
...+|.++ +.+++|+||+.+...... .. ..+....+....++++.+.+.+.+.++|.|
T Consensus 126 ~~~~~~~~----~~~vl~~gD~~~~~~~~~------~~------~~~~~~~~~~~~~~~~~~~~~~~~~i~~~H 183 (183)
T smart00849 126 GSIVLYLP----EGKILFTGDLLFSGGIGR------TD------DDGGDASASDSLESLLKLLALDPELVVPGH 183 (183)
T ss_pred CcEEEEEC----CCCEEEECCeeeccCCCC------cc------cCCCCccHHHHHHHHHHhhcCCccEeecCC
Confidence 12355554 358999999988654300 00 111111223456677777777888898887
No 21
>COG0595 mRNA degradation ribonucleases J1/J2 (metallo-beta-lactamase superfamily) [Translation, ribosomal structure and biogenesis; Replication, recombination and repair]
Probab=99.30 E-value=5.8e-11 Score=120.37 Aligned_cols=192 Identities=18% Similarity=0.244 Sum_probs=132.7
Q ss_pred CceEEEEe------cCcEEEEEeCCeEEEEccccCCCCCCCcccccccCccccchhhhhhhccccCCC-----CCCCCCc
Q 018490 77 DVFKLTYL------EGNSWLWDLDGVKVLVDPILVGNLDFGIPWLFDAGKKFLKSFQIVLIGMKTLVQ-----LSDLPQV 145 (355)
Q Consensus 77 ~~~~itwl------Ghss~li~~~g~~iLiDP~~sg~~~~p~~~~~~g~~~r~~~~~~~~~g~~~~~~-----~~~lp~i 145 (355)
.+++|.-| |.+++++++++..+++|+ | ..||-. .++|+|..+. .+...++
T Consensus 7 ~~i~i~~lGG~~EiGkN~~vve~~~~i~i~D~---G-~~fp~~---------------~~~gvDliIPd~~yl~~n~~kv 67 (555)
T COG0595 7 AKIKIFALGGVGEIGKNMYVVEYGDDIIILDA---G-LKFPED---------------DLLGVDLIIPDFSYLEENKDKV 67 (555)
T ss_pred CceEEEEecChhhhccceEEEEECCcEEEEEC---c-cccCcc---------------ccccccEEecChHHhhhccccc
Confidence 45666665 579999999999999999 4 223311 1222222211 1222489
Q ss_pred CEEEecCCCCCCCChhhHHHhhhcCCCceEEEcCChHHHHhhc----C-----CceEEcCCCceEEeCcccCCceEEEEE
Q 018490 146 DCLLITQSLDDHCHLKTLKPLSKMSPNLKVIATPNAKTLLDPL----F-----QNVTYVEPGQSSEIEGRNGSKLRVKAT 216 (355)
Q Consensus 146 D~VlISH~H~DHld~~tl~~l~~~~~~~~v~~~~~~~~~l~~~----~-----~~v~~l~~~e~~~l~~~~~~~l~i~~~ 216 (355)
++|+|||.|.|| ++++..|..+.+.+++|+++.+...++.. + ..+++++.+++++++ ++.|++.
T Consensus 68 kgI~lTHgHeDH--IGaip~ll~~~~~~piy~s~lt~~Li~~k~~~~~~~~~~~~~~ev~~~~~i~~~-----~~~v~f~ 140 (555)
T COG0595 68 KGIFLTHGHEDH--IGALPYLLKQVLFAPIYASPLTAALIKEKLKEHGLFKNENELHEVKPGSEIKFG-----SFEVEFF 140 (555)
T ss_pred eEEEecCCchhh--ccchHHHHhcCCcCceecCHhhHHHHHHHHHHhccccccCceEEeCCCCeEEeC-----cEEEEEE
Confidence 999999999999 58999998866459999999988765543 1 468999999999997 8999999
Q ss_pred ecCccCCCCCCCccEEEEEecCCceeEEEcCCCCCCc-----------cccccc--CCcEEEEccccccCCCcee--ccC
Q 018490 217 AGPVLGPPWQRPENGYLVNSSQGQLTLYYEPHCVYNQ-----------NFLEKE--RSDIIITPVIKQLLPKFTL--VSG 281 (355)
Q Consensus 217 pa~~~g~~~~~~~~g~~i~~~~~~~~i~~sGDt~~~~-----------~~~~~~--~~Dl~~l~~g~~~~~~~~~--h~~ 281 (355)
+..||=+ ...|++|+++. ..|.|+||-.++. .+.+++ ++++++.+.+....|.++. +.-
T Consensus 141 ~vtHSIP----ds~g~~i~Tp~--G~Iv~TGDFk~d~~~~~g~~~d~~r~~~~g~eGVl~LisdsTna~~pg~t~SE~~v 214 (555)
T COG0595 141 PVTHSIP----DSLGIVIKTPE--GNIVYTGDFKFDPTPVDGEPTDLARLAEIGKEGVLALISDSTNAENPGFTPSESEV 214 (555)
T ss_pred eecccCc----cceEEEEECCC--ccEEEeCCEEecCCcCCCCcCCHHHHHHhccCCcEEEEeCCcccCCCCCCCCHHHH
Confidence 8888743 24799999995 4899999965432 233444 6899999987655555542 111
Q ss_pred HHHHHHHHHHcCCCEEEEe
Q 018490 282 QEDAVKLAKLLHAKFIVPM 300 (355)
Q Consensus 282 ~~ea~~~~~~l~~k~~ip~ 300 (355)
.+...++++..+.+.++.+
T Consensus 215 ~~~l~~i~~~a~grVIv~t 233 (555)
T COG0595 215 GENLEDIIRNAKGRVIVTT 233 (555)
T ss_pred HHHHHHHHHhCCCcEEEEE
Confidence 2334445555566666644
No 22
>PRK11921 metallo-beta-lactamase/flavodoxin domain-containing protein; Provisional
Probab=99.24 E-value=4.9e-11 Score=117.80 Aligned_cols=125 Identities=20% Similarity=0.226 Sum_probs=82.3
Q ss_pred cEEEEEeCCeEEEEccccCCCCCCCcccccccCccccchhhhhhhccccCCCCCCCCCcCEEEecCCCCCCCChhhHHHh
Q 018490 87 NSWLWDLDGVKVLVDPILVGNLDFGIPWLFDAGKKFLKSFQIVLIGMKTLVQLSDLPQVDCLLITQSLDDHCHLKTLKPL 166 (355)
Q Consensus 87 ss~li~~~g~~iLiDP~~sg~~~~p~~~~~~g~~~r~~~~~~~~~g~~~~~~~~~lp~iD~VlISH~H~DHld~~tl~~l 166 (355)
+||||+ ++..+||||.... + .+.+ +..+. . .-++.+||+|++||.|.|| .+++..|
T Consensus 34 NsyLI~-~~~~vLIDtg~~~---~-~~~~-------~~~l~-------~---~~~~~~Id~IilTH~H~DH--iggl~~l 89 (394)
T PRK11921 34 NSYLIK-DEKTVLIDTVWQP---F-AKEF-------VENLK-------K---EIDLDKIDYIVANHGEIDH--SGALPEL 89 (394)
T ss_pred EEEEEe-CCCEEEEeCCCCC---c-HHHH-------HHHHH-------h---hcCcccCCEEEeCCCCCch--hhHHHHH
Confidence 789997 4678999995421 1 0111 11111 0 1123479999999999999 5888888
Q ss_pred hhcCCCceEEEcCChHHHHhhcC---CceEEcCCCceEEeCcccCCceEEEEE--ecCccCCCCCCCccEEEEEecCCce
Q 018490 167 SKMSPNLKVIATPNAKTLLDPLF---QNVTYVEPGQSSEIEGRNGSKLRVKAT--AGPVLGPPWQRPENGYLVNSSQGQL 241 (355)
Q Consensus 167 ~~~~~~~~v~~~~~~~~~l~~~~---~~v~~l~~~e~~~l~~~~~~~l~i~~~--pa~~~g~~~~~~~~g~~i~~~~~~~ 241 (355)
.+++|++++|+++.....+.+.. .++..++.++++.++ +.+++++ |+.|+.. .+.+.+ + +.
T Consensus 90 ~~~~p~a~V~~~~~~~~~l~~~~~~~~~~~~v~~g~~l~lG-----~~~l~~i~tP~~H~p~-----~~~~y~--~--~~ 155 (394)
T PRK11921 90 MKEIPDTPIYCTKNGAKSLKGHYHQDWNFVVVKTGDRLEIG-----SNELIFIEAPMLHWPD-----SMFTYL--T--GD 155 (394)
T ss_pred HHHCCCCEEEECHHHHHHHHHHhCCCCceEEeCCCCEEeeC-----CeEEEEEeCCCCCCCC-----ceEEEE--c--CC
Confidence 87777899999988776665432 356778899999998 5555555 5434311 123333 2 34
Q ss_pred eEEEcCCC
Q 018490 242 TLYYEPHC 249 (355)
Q Consensus 242 ~i~~sGDt 249 (355)
+++|+||+
T Consensus 156 ~vLFsgD~ 163 (394)
T PRK11921 156 NILFSNDA 163 (394)
T ss_pred CEEEecCc
Confidence 89999997
No 23
>COG1782 Predicted metal-dependent RNase, consists of a metallo-beta-lactamase domain and an RNA-binding KH domain [General function prediction only]
Probab=99.21 E-value=5.4e-10 Score=109.19 Aligned_cols=191 Identities=19% Similarity=0.240 Sum_probs=119.6
Q ss_pred CceEEEEec------CcEEEEEeCCeEEEEccccCCCCCCCcccccccCccccchhhhhhhccccCCCCCCCC--CcCEE
Q 018490 77 DVFKLTYLE------GNSWLWDLDGVKVLVDPILVGNLDFGIPWLFDAGKKFLKSFQIVLIGMKTLVQLSDLP--QVDCL 148 (355)
Q Consensus 77 ~~~~itwlG------hss~li~~~g~~iLiDP~~sg~~~~p~~~~~~g~~~r~~~~~~~~~g~~~~~~~~~lp--~iD~V 148 (355)
.-+++|.|| -||+|+++...++|+||..+- ++-| + .++ |-+...++. .+|||
T Consensus 179 ~wvRvt~LGg~~EVGRSa~lv~T~eSrVLlDcG~n~-a~~~--~---------~~~--------Pyl~vpE~~~~~lDAV 238 (637)
T COG1782 179 RWVRVTALGGFREVGRSALLVSTPESRVLLDCGVNV-AGNG--E---------DAF--------PYLDVPEFQPDELDAV 238 (637)
T ss_pred ceEEEEeeccchhccceeEEEecCCceEEEeccccC-CCCc--c---------ccC--------cccccccccccccceE
Confidence 347889986 489999999999999997752 2201 0 011 111122221 69999
Q ss_pred EecCCCCCCCChhhHHHhhhcCCCceEEEcCChHHH---Hh--------hcC--------------CceEEcCCCceEEe
Q 018490 149 LITQSLDDHCHLKTLKPLSKMSPNLKVIATPNAKTL---LD--------PLF--------------QNVTYVEPGQSSEI 203 (355)
Q Consensus 149 lISH~H~DHld~~tl~~l~~~~~~~~v~~~~~~~~~---l~--------~~~--------------~~v~~l~~~e~~~l 203 (355)
+|||.|.||+ +.|..|-+-.=+-+||+++.+.+. |+ +-| ...+.+|.|+...+
T Consensus 239 iiTHAHLDH~--G~lP~LfkYgy~GPVY~T~PTRDlm~LLq~Dyi~va~keg~~ppY~~k~v~~~lkhtItldYgevTDI 316 (637)
T COG1782 239 IITHAHLDHC--GFLPLLFKYGYDGPVYCTPPTRDLMVLLQLDYIEVAEKEGGEPPYESKDVRKVLKHTITLDYGEVTDI 316 (637)
T ss_pred EEeecccccc--cchhhhhhcCCCCCeeeCCCcHHHHHHHHHHHHHHHHhcCCCCCCCHHHHHHHHheeeeeccCccccc
Confidence 9999999997 566666543225699999986541 11 112 24678999998888
Q ss_pred CcccCCceEEEEEecCccCCCCCCCcc-EEEEEecCCceeEEEcCCCCCCc-cccc-----ccCCcEEEEccccccCCCc
Q 018490 204 EGRNGSKLRVKATAGPVLGPPWQRPEN-GYLVNSSQGQLTLYYEPHCVYNQ-NFLE-----KERSDIIITPVIKQLLPKF 276 (355)
Q Consensus 204 ~~~~~~~l~i~~~pa~~~g~~~~~~~~-g~~i~~~~~~~~i~~sGDt~~~~-~~~~-----~~~~Dl~~l~~g~~~~~~~ 276 (355)
. .+++++.--|-|. ..+ .--+..++|..+|.|+||-.|.. .+.+ ...++.++++.. |-.+-
T Consensus 317 a----PDirLTf~NAGHI------LGSA~~HlHIGdGlyNi~yTGDfk~~~trLl~~A~n~FpRvEtlimEsT--YGg~~ 384 (637)
T COG1782 317 A----PDIRLTFYNAGHI------LGSAMAHLHIGDGLYNIVYTGDFKFEKTRLLEPANNKFPRVETLIMEST--YGGRD 384 (637)
T ss_pred C----CccEEEEecccch------hcceeeEEEecCCceeEEEecccccceeeecChhhccCcchhheeeeec--cCCcc
Confidence 7 4788877644332 111 12233444479999999998865 3332 237899999873 22222
Q ss_pred eeccCHHHHHHHHHHc-------CCCEEEEec
Q 018490 277 TLVSGQEDAVKLAKLL-------HAKFIVPMK 301 (355)
Q Consensus 277 ~~h~~~~ea~~~~~~l-------~~k~~ip~H 301 (355)
+.+..-+||-+.+.++ +.|.+||+-
T Consensus 385 d~q~~R~eaE~~L~~vi~~t~~rGGKvLIP~f 416 (637)
T COG1782 385 DVQPPREEAEKELIKVINDTLKRGGKVLIPVF 416 (637)
T ss_pred ccCccHHHHHHHHHHHHHHHHhcCCeEEEEee
Confidence 3444556665544332 688999874
No 24
>TIGR02650 RNase_Z_T_toga ribonuclease Z, Thermotoga type. Members of this protein family are ribonuclease Z as found in the genus Thermotoga, where the enzyme cleaves after the CCA, in contrast to the activities characterized for other enzymes also designated ribonuclease Z. In other systems, cleavage occurs 5-prime to the location of the CCA sequence, and CCA is added subsequently. A species may lack ribonuclease Z if all tRNA genes encode the CCA sequence, or if the CCA is exposed by exonuclease activity rather than endonuclease activity. Note that members of this sequence family differ considerably from the majority of RNase Z sequences.
Probab=99.19 E-value=4.1e-10 Score=104.75 Aligned_cols=187 Identities=12% Similarity=0.057 Sum_probs=110.5
Q ss_pred CCCCcCEEEecCCCCCCCChhhHHHhh-------hcCCCceEEEcCChHHHHhhc-------C------CceEEcCCCce
Q 018490 141 DLPQVDCLLITQSLDDHCHLKTLKPLS-------KMSPNLKVIATPNAKTLLDPL-------F------QNVTYVEPGQS 200 (355)
Q Consensus 141 ~lp~iD~VlISH~H~DHld~~tl~~l~-------~~~~~~~v~~~~~~~~~l~~~-------~------~~v~~l~~~e~ 200 (355)
.+..++.|||||.|.||. +++..+. .+.+...||+++...+.++.+ . .++..+..++.
T Consensus 37 k~~~l~~vFlTH~H~DHi--~gL~~~~~~~~~~~~~~~p~~Vy~P~g~~~~ve~~~~~~~~~~~~~~~~~~~~~~~~~e~ 114 (277)
T TIGR02650 37 KVAAFKVFFLHGGHDDHA--AGLGGVNIINNGGGDDEEKLDDFFPKEGNAAEEETSEFIKAANEDLFFFFNHHLEEEDER 114 (277)
T ss_pred hHhhcCEEEeecCchhhh--cchHHHHhhhhhcccCCCCCeEECCcchhHHHHHHHHHHHHhhhhhccCcccCCCCCCcE
Confidence 345789999999999995 5552221 122356788888766655522 1 12323333444
Q ss_pred EEeCcccCCceEEEEEecCccCCCCCCCccEEEEE------------------------------ecCCceeEEEcCCCC
Q 018490 201 SEIEGRNGSKLRVKATAGPVLGPPWQRPENGYLVN------------------------------SSQGQLTLYYEPHCV 250 (355)
Q Consensus 201 ~~l~~~~~~~l~i~~~pa~~~g~~~~~~~~g~~i~------------------------------~~~~~~~i~~sGDt~ 250 (355)
+.+. ..+..+.|.+.+..|.-. .....||+|. ++.-..+|.|+|||.
T Consensus 115 ~~~r-~~~~~~~V~~f~t~H~v~--~~~s~GY~~~~~r~KLK~E~~~l~~~eI~~l~~~gg~~~t~e~~~~~vvysGDT~ 191 (277)
T TIGR02650 115 FFLD-AAGFFKRVQPFFRKHHAS--EESFFGHHFEERRKKKEEEFGGDDKKEARLLKEEGGDDFTREEHHKILLIIGDDL 191 (277)
T ss_pred EEee-cCCccEEEecCccccccC--ccCccCeEEEEEeecchHhHcCCCHHHHHHHHHhCCccccccccCcEEEEeCCCC
Confidence 4443 111236777766654310 0012355542 111147899999999
Q ss_pred CCcccccccCCcEEEEcccccc--CCCceeccCHHHHHHHHHHcCCCEEEEeccCCccccccccccccccCCHHHHHHHH
Q 018490 251 YNQNFLEKERSDIIITPVIKQL--LPKFTLVSGQEDAVKLAKLLHAKFIVPMKNGDLDSKGFLASIIQSEGTVESFKELL 328 (355)
Q Consensus 251 ~~~~~~~~~~~Dl~~l~~g~~~--~~~~~~h~~~~ea~~~~~~l~~k~~ip~H~~~f~~~g~l~~~~~~~~~~~~~~~~~ 328 (355)
+... ....+.|++++++.-.. ...-..|++..|+++.++..+.+.++.+|+..-. ..+..+++.+..
T Consensus 192 ~~~~-~~a~~adlLIhEaTf~d~~~~~~~gH~t~~eaa~~A~~a~vk~LiLtH~Ssry----------~~~~~~~~~~~~ 260 (277)
T TIGR02650 192 AADD-EEEEGGEELIHECCFFDDADDRRKKHAAADDEMEESKKAAGKKKIILHHISRR----------IIRILKSIIKKR 260 (277)
T ss_pred CCCh-HHhcCCCEEEEecccccccccccCCCCCHHHHHHHHHHcCCCEEEEEeecccc----------cHHHHHHHHHHH
Confidence 8753 33348999999994210 0011249999999999999999999999997532 123345555555
Q ss_pred HhcCCCCeEeccCCC
Q 018490 329 SKELPDAQLLEPTPG 343 (355)
Q Consensus 329 ~~~~~~~~~~~p~~G 343 (355)
++.-+.+.+....+|
T Consensus 261 ~~~~~~~~~~~~~~~ 275 (277)
T TIGR02650 261 EEEMDDEEILMDDPR 275 (277)
T ss_pred HhhcCccceeccCCC
Confidence 444344666555444
No 25
>COG1236 YSH1 Predicted exonuclease of the beta-lactamase fold involved in RNA processing [Translation, ribosomal structure and biogenesis]
Probab=99.09 E-value=5.3e-09 Score=104.18 Aligned_cols=148 Identities=20% Similarity=0.209 Sum_probs=101.4
Q ss_pred cCcEEEEEeCCeEEEEccccCCCCCCCcccccccCccccchhhhhhhccccCCCCCCCCCcCEEEecCCCCCCCChhhHH
Q 018490 85 EGNSWLWDLDGVKVLVDPILVGNLDFGIPWLFDAGKKFLKSFQIVLIGMKTLVQLSDLPQVDCLLITQSLDDHCHLKTLK 164 (355)
Q Consensus 85 Ghss~li~~~g~~iLiDP~~sg~~~~p~~~~~~g~~~r~~~~~~~~~g~~~~~~~~~lp~iD~VlISH~H~DHld~~tl~ 164 (355)
|-+|.+|++++.+||+||.+.. .. +. + ..+ +.. ..+++|+|+|||.|.||+ +.+.
T Consensus 13 g~s~~~l~~~~~~il~D~G~~~-~~-~~-------~--~~p-----------~~~-~~~~vDavllTHaHlDH~--g~lp 67 (427)
T COG1236 13 GRSCVLLETGGTRILLDCGLFP-GD-PS-------P--ERP-----------LLP-PFPKVDAVLLTHAHLDHI--GALP 67 (427)
T ss_pred CcEEEEEEECCceEEEECCCCc-Cc-CC-------c--cCC-----------CCC-CCCCcCEEEeccCchhhh--cccH
Confidence 5689999999999999995431 11 00 0 011 112 233799999999999994 7777
Q ss_pred HhhhcCCCceEEEcCChHHHHhhc------------------------CCceEEcCCCceEEeCcccCCceEEEEEecCc
Q 018490 165 PLSKMSPNLKVIATPNAKTLLDPL------------------------FQNVTYVEPGQSSEIEGRNGSKLRVKATAGPV 220 (355)
Q Consensus 165 ~l~~~~~~~~v~~~~~~~~~l~~~------------------------~~~v~~l~~~e~~~l~~~~~~~l~i~~~pa~~ 220 (355)
.+....=+.++|+++.+...++-. ..+++.++.+++++++ +++|++.+|-|
T Consensus 68 ~l~~~~~~~~v~aT~~T~~l~~~~l~d~~~~~~~~~~~~~~~~d~~~~~~~~~~~~yg~~~~v~-----~~~v~~~~AGH 142 (427)
T COG1236 68 YLVRNGFEGPVYATPPTAALLKVLLGDSLKLAEGPDKPPYSEEDVERVPDLIRPLPYGEPVEVG-----GVKVTFYNAGH 142 (427)
T ss_pred HHHHhccCCceeeccCHHHHHHHHHHHHHhhhcCCCCCCCchhHHHhhHhhEEEecCCCceEee-----eEEEEEecCCC
Confidence 776521147899999876532211 1356679999999998 79999998865
Q ss_pred cCCCCCCCccEEEEEecCCceeEEEcCCCCCCcc--cc--ccc-CCcEEEEccc
Q 018490 221 LGPPWQRPENGYLVNSSQGQLTLYYEPHCVYNQN--FL--EKE-RSDIIITPVI 269 (355)
Q Consensus 221 ~g~~~~~~~~g~~i~~~~~~~~i~~sGDt~~~~~--~~--~~~-~~Dl~~l~~g 269 (355)
.- ..++|.++.+ +.+|.|+||.+.... .. +.. .+|++++|..
T Consensus 143 il-----Gsa~~~le~~--~~~ilytGD~~~~~~~l~~~a~~~~~~DvLI~EsT 189 (427)
T COG1236 143 IL-----GSAAILLEVD--GGRILYTGDVKRRKDRLLNGAELPPCIDVLIVEST 189 (427)
T ss_pred cc-----ceeEEEEEeC--CceEEEEeccCCCcCCCCCccccCCCCcEEEEecc
Confidence 41 1358889987 457999999875332 21 111 3699999973
No 26
>COG0426 FpaA Uncharacterized flavoproteins [Energy production and conversion]
Probab=99.05 E-value=9.5e-10 Score=106.22 Aligned_cols=128 Identities=18% Similarity=0.312 Sum_probs=89.7
Q ss_pred cEEEEEeCCeEEEEccccCCCCCCCcccccccCccccchhhhhhhccccCCCCCCCCCcCEEEecCCCCCCCChhhHHHh
Q 018490 87 NSWLWDLDGVKVLVDPILVGNLDFGIPWLFDAGKKFLKSFQIVLIGMKTLVQLSDLPQVDCLLITQSLDDHCHLKTLKPL 166 (355)
Q Consensus 87 ss~li~~~g~~iLiDP~~sg~~~~p~~~~~~g~~~r~~~~~~~~~g~~~~~~~~~lp~iD~VlISH~H~DHld~~tl~~l 166 (355)
|||||+ +++++||||+ ...+ ..-+ +..++ . .-++.+||+|+++|.-.|| .++|..|
T Consensus 37 NSYLI~-~~k~aLID~~---~~~~-~~~~-------l~~l~-------~---~id~k~iDYIi~~H~ePDh--sg~l~~l 92 (388)
T COG0426 37 NSYLIV-GDKTALIDTV---GEKF-FDEY-------LENLS-------K---YIDPKEIDYIIVNHTEPDH--SGSLPEL 92 (388)
T ss_pred eeEEEe-CCcEEEECCC---Ccch-HHHH-------HHHHH-------h---hcChhcCeEEEECCCCcch--hhhHHHH
Confidence 799999 9999999994 3322 1111 11221 1 2334479999999999999 5999999
Q ss_pred hhcCCCceEEEcCChHHHHhhcC---CceEEcCCCceEEeCcccCCceEEEEEecCccCCCCCCCccEEEEEecCCceeE
Q 018490 167 SKMSPNLKVIATPNAKTLLDPLF---QNVTYVEPGQSSEIEGRNGSKLRVKATAGPVLGPPWQRPENGYLVNSSQGQLTL 243 (355)
Q Consensus 167 ~~~~~~~~v~~~~~~~~~l~~~~---~~v~~l~~~e~~~l~~~~~~~l~i~~~pa~~~g~~~~~~~~g~~i~~~~~~~~i 243 (355)
.+..|+++++++...+..|+..+ ..+..++.|+++.++ +..+++..+|-.||.. +++.-.. ..+|
T Consensus 93 l~~~p~a~ii~s~~~~~~L~~~~~~~~~~~ivk~Gd~ldlG---g~tL~Fi~ap~LHWPd-------~m~TYd~--~~kI 160 (388)
T COG0426 93 LELAPNAKIICSKLAARFLKGFYHDPEWFKIVKTGDTLDLG---GHTLKFIPAPFLHWPD-------TMFTYDP--EDKI 160 (388)
T ss_pred HHhCCCCEEEeeHHHHHHHHHhcCCccceeecCCCCEeccC---CcEEEEEeCCCCCCCC-------ceeEeec--CCcE
Confidence 98889999999999999888874 237889999999998 3345554444335532 2222222 2489
Q ss_pred EEcCCCC
Q 018490 244 YYEPHCV 250 (355)
Q Consensus 244 ~~sGDt~ 250 (355)
+||+|.+
T Consensus 161 LFS~D~f 167 (388)
T COG0426 161 LFSCDAF 167 (388)
T ss_pred EEccccc
Confidence 9999964
No 27
>PRK05452 anaerobic nitric oxide reductase flavorubredoxin; Provisional
Probab=99.04 E-value=1.3e-09 Score=110.16 Aligned_cols=128 Identities=20% Similarity=0.281 Sum_probs=82.3
Q ss_pred cEEEEEeCCeEEEEccccCCCCCCCcccccccCccccchhhhhhhccccCCCCCCCCCcCEEEecCCCCCCCChhhHHHh
Q 018490 87 NSWLWDLDGVKVLVDPILVGNLDFGIPWLFDAGKKFLKSFQIVLIGMKTLVQLSDLPQVDCLLITQSLDDHCHLKTLKPL 166 (355)
Q Consensus 87 ss~li~~~g~~iLiDP~~sg~~~~p~~~~~~g~~~r~~~~~~~~~g~~~~~~~~~lp~iD~VlISH~H~DHld~~tl~~l 166 (355)
|||||+ +++.+||||+- ..+ .+.+ +..+. . .-++.+||+|++||.|.||. +++..|
T Consensus 36 NsYLI~-~~~~vLIDtg~---~~~-~~~~-------l~~l~-------~---~~~~~~Id~IilTH~H~DH~--Ggl~~L 91 (479)
T PRK05452 36 NSYLIR-EEKNVLIDTVD---HKF-SREF-------VQNLR-------N---EIDLADIDYIVINHAEEDHA--GALTEL 91 (479)
T ss_pred EEEEEE-CCCEEEEeCCC---ccc-HHHH-------HHHHH-------h---cCCHhhCCEEEeCCCCcchh--chHHHH
Confidence 799998 57899999942 211 0111 11111 0 11234799999999999995 788888
Q ss_pred hhcCCCceEEEcCChHHHHhhcC----CceEEcCCCceEEeCcccCCceEEEEEecCccCCCCCCCccEEEEEecCCcee
Q 018490 167 SKMSPNLKVIATPNAKTLLDPLF----QNVTYVEPGQSSEIEGRNGSKLRVKATAGPVLGPPWQRPENGYLVNSSQGQLT 242 (355)
Q Consensus 167 ~~~~~~~~v~~~~~~~~~l~~~~----~~v~~l~~~e~~~l~~~~~~~l~i~~~pa~~~g~~~~~~~~g~~i~~~~~~~~ 242 (355)
.+++|++++|+++.....+.... .++..++.|+++.+++ +..+++..+|+-|+.. ...+.++ +.+
T Consensus 92 l~~~p~a~V~~s~~~~~~l~~~~~~~~~~~~~v~~G~~l~lG~--~~~l~~i~tP~~H~pg-----s~~~y~~----~~~ 160 (479)
T PRK05452 92 MAQIPDTPIYCTANAIDSINGHHHHPEWNFNVVKTGDTLDIGN--GKQLIFVETPMLHWPD-----SMMTYLT----GDA 160 (479)
T ss_pred HHHCCCCEEEECHHHHHHHHHhhcCCcCeEEEeCCCCEEecCC--CcEEEEEECCCCCCCC-----ceEEEEc----CCC
Confidence 87777899999988877665431 2567889999999961 0124555555434311 1233333 348
Q ss_pred EEEcCCC
Q 018490 243 LYYEPHC 249 (355)
Q Consensus 243 i~~sGDt 249 (355)
++|+||.
T Consensus 161 vLFsgD~ 167 (479)
T PRK05452 161 VLFSNDA 167 (479)
T ss_pred EEEeccc
Confidence 9999995
No 28
>COG1235 PhnP Metal-dependent hydrolases of the beta-lactamase superfamily I [General function prediction only]
Probab=98.99 E-value=5.7e-09 Score=97.87 Aligned_cols=154 Identities=18% Similarity=0.121 Sum_probs=88.9
Q ss_pred CCcCEEEecCCCCCCCChhhHHHhhhcCCCceEEEcCChHHH-----HhhcC--CceEEcCCCceEEeCcccCCceEEEE
Q 018490 143 PQVDCLLITQSLDDHCHLKTLKPLSKMSPNLKVIATPNAKTL-----LDPLF--QNVTYVEPGQSSEIEGRNGSKLRVKA 215 (355)
Q Consensus 143 p~iD~VlISH~H~DHld~~tl~~l~~~~~~~~v~~~~~~~~~-----l~~~~--~~v~~l~~~e~~~l~~~~~~~l~i~~ 215 (355)
+.+|+||+||.|+|| +.++..|.+.+ ..+++..+..... +...+ .........+...++ +++++.
T Consensus 61 ~~idai~~TH~H~DH--i~Gl~~l~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-----~~~~~~ 132 (269)
T COG1235 61 SDLDAILLTHEHSDH--IQGLDDLRRAY-TLPIYVNPGTLRASTSDRLLGGFPYLFRHPFPPFSLPAIG-----GLEVTP 132 (269)
T ss_pred cccCeEEEecccHHh--hcChHHHHHHh-cCCcccccceecccchhhhhccchhhhcCCCCcccccccc-----ceeeec
Confidence 479999999999999 57777777644 3444444332221 12221 111222233333443 555554
Q ss_pred EecCccCC------------CC-CCCccEEEEEecCCceeEEEcCCCCCCccccc-----ccCCcEEEEccccccCCCce
Q 018490 216 TAGPVLGP------------PW-QRPENGYLVNSSQGQLTLYYEPHCVYNQNFLE-----KERSDIIITPVIKQLLPKFT 277 (355)
Q Consensus 216 ~pa~~~g~------------~~-~~~~~g~~i~~~~~~~~i~~sGDt~~~~~~~~-----~~~~Dl~~l~~g~~~~~~~~ 277 (355)
.+..|... .. +..-.||.++.. ...+.|.+|+.+.+...+ ....++.+........+...
T Consensus 133 ~~~~hd~~~~~~~~~~~~~~~~~~~~~~g~~~~~~--~~~vay~~Dt~~~~~~~d~~l~~~~~~~~~~~~~~~~~~gh~~ 210 (269)
T COG1235 133 FPVPHDAIEPVGFVIIRTGRKLHGGTDIGYGLEWR--IGDVAYLTDTELFPSNHDVELLDNGLYPLDIKDRILPDPGHLS 210 (269)
T ss_pred CCCCCccccCCCcccccCcccccccccceeeeeee--eccEEEccccccCcchhHHHHhcCCccceeeeeccccccCCCC
Confidence 33322110 00 111347777665 358889999987654322 22555555544211111334
Q ss_pred eccCHHHHHHHHHHcCCCEEEEeccCCcc
Q 018490 278 LVSGQEDAVKLAKLLHAKFIVPMKNGDLD 306 (355)
Q Consensus 278 ~h~~~~ea~~~~~~l~~k~~ip~H~~~f~ 306 (355)
.|+..++|+++++++++|+++.+|.+...
T Consensus 211 ~h~~~~~a~~~~~~~~~~rivLtHls~~~ 239 (269)
T COG1235 211 NHLSAEEALELIEKLKPKRLVLTHLSHKN 239 (269)
T ss_pred CchhHHHHHHHHHhCCcceEEEEecCCCC
Confidence 58899999999999999999999998643
No 29
>PF00753 Lactamase_B: Metallo-beta-lactamase superfamily; InterPro: IPR001279 Apart from the beta-lactamases and metallo-beta-lactamases, a number of other proteins contain this domain []. These proteins include thiolesterases, members of the glyoxalase II family, that catalyse the hydrolysis of S-D-lactoyl-glutathione to form glutathione and D-lactic acid and a competence protein that is essential for natural transformation in Neisseria gonorrhoeae and could be a transporter involved in DNA uptake. Except for the competence protein these proteins bind two zinc ions per molecule as cofactor.; GO: 0016787 hydrolase activity; PDB: 3H3E_A 3Q6V_B 3SD9_B 3IOF_A 2GKL_A 1X8I_A 3FAI_A 2QDS_A 3IOG_A 3F9O_A ....
Probab=98.99 E-value=6.6e-10 Score=96.33 Aligned_cols=179 Identities=15% Similarity=0.159 Sum_probs=95.0
Q ss_pred EecCcEEEEEeCCeEEEEccccCCCCCCCcccccccCccccchhhhhhhccccCCCCCCCCCcCEEEecCCCCCCCChhh
Q 018490 83 YLEGNSWLWDLDGVKVLVDPILVGNLDFGIPWLFDAGKKFLKSFQIVLIGMKTLVQLSDLPQVDCLLITQSLDDHCHLKT 162 (355)
Q Consensus 83 wlGhss~li~~~g~~iLiDP~~sg~~~~p~~~~~~g~~~r~~~~~~~~~g~~~~~~~~~lp~iD~VlISH~H~DHld~~t 162 (355)
+.+.+|++|+.++..|||||..... .... .. .... .....+|++|++||.|.|| .++
T Consensus 3 ~~~~n~~li~~~~~~iliD~G~~~~----~~~~----~~-~~~~------------~~~~~~i~~vi~TH~H~DH--~gg 59 (194)
T PF00753_consen 3 EGGSNSYLIEGGDGAILIDTGLDPD----FAKE----LE-LALL------------GISGEDIDAVILTHAHPDH--IGG 59 (194)
T ss_dssp SEEEEEEEEEETTEEEEESEBSSHH----HHHH----HH-HHHH------------HHTGGGEEEEEESSSSHHH--HTT
T ss_pred CeeEEEEEEEECCEEEEEeCCCCch----hhHH----hh-hhHh------------hccCCCeEEEEECcccccc--ccc
Confidence 5678999999999999999943210 0000 00 0000 0122389999999999999 689
Q ss_pred HHHhhhcCCCceEEEcCChHH-HHhhcC------------CceEEcCCCceEEeCcccCCceEEEEEecCccCCCCCCCc
Q 018490 163 LKPLSKMSPNLKVIATPNAKT-LLDPLF------------QNVTYVEPGQSSEIEGRNGSKLRVKATAGPVLGPPWQRPE 229 (355)
Q Consensus 163 l~~l~~~~~~~~v~~~~~~~~-~l~~~~------------~~v~~l~~~e~~~l~~~~~~~l~i~~~pa~~~g~~~~~~~ 229 (355)
+..+.++.+ ...+....... ...... .........+..... ....+...+... . ..
T Consensus 60 l~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----~~~~~~~~~~~~--~----~~ 128 (194)
T PF00753_consen 60 LPELLEAGP-VVIIYSSADAAKAIRPPDRDSASRRGPAVPPPPIIDEDEDDLEIG----GDRILFIIPGPG--H----GS 128 (194)
T ss_dssp HHHHHHHTT-EEEEEEHHHHHHHHHHHHHHHHHHHHHHHESEEEEEETTTEEEEE----TTEEEEEEESSS--S----ST
T ss_pred ccccccccc-eeeeeccccccccccccccccccccccccccccceeeeccccccc----ccccccceeccc--c----CC
Confidence 999988763 33443333222 111110 111122222223332 144444443331 0 24
Q ss_pred cEEEEEecCCceeEEEcCCCCCCcccccccCCcEEEEccccccCCCceeccCHHHHHHHHHHcCCCEEEEec
Q 018490 230 NGYLVNSSQGQLTLYYEPHCVYNQNFLEKERSDIIITPVIKQLLPKFTLVSGQEDAVKLAKLLHAKFIVPMK 301 (355)
Q Consensus 230 ~g~~i~~~~~~~~i~~sGDt~~~~~~~~~~~~Dl~~l~~g~~~~~~~~~h~~~~ea~~~~~~l~~k~~ip~H 301 (355)
.++++..+ +.+++|+||..+........ .+ .............+....++++.+..+++++++|.|
T Consensus 129 ~~~~~~~~--~~~vlftGD~~~~~~~~~~~-~~---~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~ii~gH 194 (194)
T PF00753_consen 129 DSLIIYLP--GGKVLFTGDLLFSNEHPNPD-PD---LPLRGADVRYGSNWEESIEALRRLEALDPEVIIPGH 194 (194)
T ss_dssp TEEEEEET--TTTEEEEETTSCTTTSSSSS-TS---HTTTTHTTSHTTHHHHHHHHHHHHHTSTTSEEEESS
T ss_pred cceEEEeC--CCcEEEeeeEeccCCccccc-cc---cccccccccCcHHHHHHHHHHHHHHCCCCCEEEeCc
Confidence 56777766 57999999998864332211 11 000000000000112345666777788999999987
No 30
>COG1237 Metal-dependent hydrolases of the beta-lactamase superfamily II [General function prediction only]
Probab=98.94 E-value=4.3e-08 Score=89.43 Aligned_cols=184 Identities=21% Similarity=0.188 Sum_probs=97.9
Q ss_pred EEEEEeCCeEEEEccccCCCCCCCcccccccCccccchhhhhhhccccCCCCCCCCCcCEEEecCCCCCCCChhhHHHhh
Q 018490 88 SWLWDLDGVKVLVDPILVGNLDFGIPWLFDAGKKFLKSFQIVLIGMKTLVQLSDLPQVDCLLITQSLDDHCHLKTLKPLS 167 (355)
Q Consensus 88 s~li~~~g~~iLiDP~~sg~~~~p~~~~~~g~~~r~~~~~~~~~g~~~~~~~~~lp~iD~VlISH~H~DHld~~tl~~l~ 167 (355)
|+||+.++++||+|. |..+ ..++.+ ++. +| + ++.++|+|+|||.||||. ++|..+.
T Consensus 24 S~LVE~~~~riLFDt---G~~~--~~ll~N-----a~~-----lg----v---d~~did~vvlSHgH~DH~--GGL~~~~ 79 (259)
T COG1237 24 SALVEDEGTRILFDT---GTDS--DVLLHN-----ARL-----LG----V---DLRDIDAVVLSHGHYDHT--GGLPYLL 79 (259)
T ss_pred EEEEEcCCeEEEEeC---CCCc--HHHHHH-----HHH-----cC----C---CcccCcEEEEeCCCcccc--CchHhHH
Confidence 789999999999999 5222 223210 111 22 2 334899999999999995 8999886
Q ss_pred hcC-CCceEEEcCChHHHHhhc----CCc-------eEEcCCCceEEeCcccCCceEEE-EEe-------cCc-cCCC-C
Q 018490 168 KMS-PNLKVIATPNAKTLLDPL----FQN-------VTYVEPGQSSEIEGRNGSKLRVK-ATA-------GPV-LGPP-W 225 (355)
Q Consensus 168 ~~~-~~~~v~~~~~~~~~l~~~----~~~-------v~~l~~~e~~~l~~~~~~~l~i~-~~p-------a~~-~g~~-~ 225 (355)
+.. +++++|++|......... +.. ++..+... .+. .++-.. -.| +.+ -|+. .
T Consensus 80 ~~~~~~i~v~ahp~af~~~~~~~~~~gi~e~~~~~~~~~~~~~~--~I~----~g~~~~Gei~~~~~e~~~~~~dg~~D~ 153 (259)
T COG1237 80 EENNPGIPVYAHPDAFKAKIEVFREIGIPELEELARLILSEEPD--EIV----EGVITLGEIPKVTFEKGGYFEDGEPDP 153 (259)
T ss_pred hccCCCceEEeChHHHhhhccccccccchhhhhccceeecCCCc--eee----cCeEEecccCccccccccccccCCCCC
Confidence 643 789999999876511111 111 11111111 111 011110 011 001 0110 0
Q ss_pred CCCccEEEEEecCCceeEEEcCCCCCCc-ccc----cccCCcEEEEccccccCCCceeccCHHHHHHHHHHcCCCEEEEe
Q 018490 226 QRPENGYLVNSSQGQLTLYYEPHCVYNQ-NFL----EKERSDIIITPVIKQLLPKFTLVSGQEDAVKLAKLLHAKFIVPM 300 (355)
Q Consensus 226 ~~~~~g~~i~~~~~~~~i~~sGDt~~~~-~~~----~~~~~Dl~~l~~g~~~~~~~~~h~~~~ea~~~~~~l~~k~~ip~ 300 (355)
-..+.+.+++++. .-+..+|-+-..- .+. +... |=+-.=+|+..+.... -.-.++.++.++++.++.++|+
T Consensus 154 ~~de~aLi~~~~~--GlvvItGCsH~GI~niv~~~~~~~g-~rv~~ViGGFHL~~~~-~~~l~~~~~~l~el~v~~i~pc 229 (259)
T COG1237 154 VLDEQALIVETEK--GLVVITGCSHPGIVNIVEWAKERSG-DRVKAVIGGFHLIGAS-EERLEEVADYLKELGVEKIYPC 229 (259)
T ss_pred cCCceEEEEecCC--ceEEEEcCCcccHHHHHHHHHHhcc-ceeEEEeeeeccCCCc-HHHHHHHHHHHHhcCCCeEEec
Confidence 1135688888763 3677777553321 111 2223 3333334542221100 0113578888999999999999
Q ss_pred ccCCc
Q 018490 301 KNGDL 305 (355)
Q Consensus 301 H~~~f 305 (355)
|..-+
T Consensus 230 HCTg~ 234 (259)
T COG1237 230 HCTGE 234 (259)
T ss_pred CCCCH
Confidence 98653
No 31
>COG2248 Predicted hydrolase (metallo-beta-lactamase superfamily) [General function prediction only]
Probab=98.94 E-value=2.1e-08 Score=90.51 Aligned_cols=224 Identities=15% Similarity=0.186 Sum_probs=109.5
Q ss_pred EEEEEeCCeEEEEccccCCCCCCCcccccccCccccchhhhhhhccccCCCCCCCCCcCEEEecCCCCCCCCh-------
Q 018490 88 SWLWDLDGVKVLVDPILVGNLDFGIPWLFDAGKKFLKSFQIVLIGMKTLVQLSDLPQVDCLLITQSLDDHCHL------- 160 (355)
Q Consensus 88 s~li~~~g~~iLiDP~~sg~~~~p~~~~~~g~~~r~~~~~~~~~g~~~~~~~~~lp~iD~VlISH~H~DHld~------- 160 (355)
+.+|++.+..|||||.-|= . |-.+-.....+.++++...+ .-+ .+-..+.|.|.|||.||||.+.
T Consensus 17 At~vet~dv~ILiDpGVsL--a-PkRy~LPPh~~E~erl~~~r----~~i-~~~ak~a~VitISHYHYDHhtPf~~~~y~ 88 (304)
T COG2248 17 ATFVETKDVGILIDPGVSL--A-PKRYGLPPHQRELERLRQAR----EKI-QRYAKKADVITISHYHYDHHTPFFDGIYE 88 (304)
T ss_pred hheeecCCeeEEECCcccc--C-ccccCCCCCHHHHHHHHHHH----HHH-HHHHhhCCEEEEeeeccccCCccccchhh
Confidence 5689999999999994431 1 21111000000011100000 000 0112478999999999999874
Q ss_pred h---hHHHhhhcCCCceEEEcCC-hH---------HHHhhcC--CceEEcCCCceEEeCcccCCceEEEEEecCccCCCC
Q 018490 161 K---TLKPLSKMSPNLKVIATPN-AK---------TLLDPLF--QNVTYVEPGQSSEIEGRNGSKLRVKATAGPVLGPPW 225 (355)
Q Consensus 161 ~---tl~~l~~~~~~~~v~~~~~-~~---------~~l~~~~--~~v~~l~~~e~~~l~~~~~~~l~i~~~pa~~~g~~~ 225 (355)
+ +-+.|.+ .+.-+.-.|. .. ..|++.+ .+-++...+.+++++ +.+|.+-|...-|+
T Consensus 89 ~s~e~~~eiY~--gK~lLlKhPte~IN~SQ~~Ra~~fl~~~~~~~~~ie~ADgk~f~fG-----~t~IefS~pvpHG~-- 159 (304)
T COG2248 89 ASGETAKEIYK--GKLLLLKHPTENINRSQRRRAYRFLESLKDIAREIEYADGKTFEFG-----GTVIEFSPPVPHGR-- 159 (304)
T ss_pred hcccchHHHhc--CcEEEecCchhhhCHHHHHHHHHHHHHhhhhcceeEecCCceEEeC-----CEEEEecCCCCCCC--
Confidence 2 3333432 1222333331 11 1233332 234566667888987 78887654431122
Q ss_pred CCCccEEEEEe--cCCceeEEEcCCCC-C--Ccc--cccccCCcEEEEccccccCCCcee-ccCHHHHHH----HHHHcC
Q 018490 226 QRPENGYLVNS--SQGQLTLYYEPHCV-Y--NQN--FLEKERSDIIITPVIKQLLPKFTL-VSGQEDAVK----LAKLLH 293 (355)
Q Consensus 226 ~~~~~g~~i~~--~~~~~~i~~sGDt~-~--~~~--~~~~~~~Dl~~l~~g~~~~~~~~~-h~~~~ea~~----~~~~l~ 293 (355)
.+...||++.. .+++.+|.|+.|+- . +.. |.....+|++++.---.|+-.+.. -.+.|-+++ ++....
T Consensus 160 eGskLGyVl~v~V~dg~~~i~faSDvqGp~~~~~l~~i~e~~P~v~ii~GPpty~lg~r~~~~~~E~~irNl~~ii~~~~ 239 (304)
T COG2248 160 EGSKLGYVLMVAVTDGKSSIVFASDVQGPINDEALEFILEKRPDVLIIGGPPTYLLGYRVGPKSLEKGIRNLERIIEETN 239 (304)
T ss_pred cccccceEEEEEEecCCeEEEEcccccCCCccHHHHHHHhcCCCEEEecCCchhHhhhhcChHHHHHHHHHHHHHHHhCc
Confidence 11235777542 23478999999984 3 222 222348999998543222222211 012344443 344445
Q ss_pred CCEEEEeccCCccccccccccccccCCHHHHHHHHHhcCCCCeEec
Q 018490 294 AKFIVPMKNGDLDSKGFLASIIQSEGTVESFKELLSKELPDAQLLE 339 (355)
Q Consensus 294 ~k~~ip~H~~~f~~~g~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 339 (355)
++ +|.-|.-.-+ - .|.+-.+++.+.+++. +++|.+
T Consensus 240 ~~-lViDHHllRD-------~-~y~e~l~~l~~~~~~~--GV~v~T 274 (304)
T COG2248 240 AT-LVIDHHLLRD-------K-NYREFLEELFERAEKA--GVEVAT 274 (304)
T ss_pred ce-EEEeehhhcC-------C-CHHHHHHHHHhhHhhc--Cceeee
Confidence 44 4445553322 1 3444455555554443 455544
No 32
>TIGR03413 GSH_gloB hydroxyacylglutathione hydrolase. Members of this protein family are hydroxyacylglutathione hydrolase, a detoxification enzyme known as glyoxalase II. It follows lactoylglutathione lyase, or glyoxalase I, and acts to remove the toxic metabolite methylglyoxal and related compounds. This protein belongs to the broader metallo-beta-lactamase family (pfam00753).
Probab=98.93 E-value=1.1e-08 Score=94.74 Aligned_cols=124 Identities=14% Similarity=0.116 Sum_probs=77.9
Q ss_pred CcCEEEecCCCCCCCChhhHHHhhhcCCCceEEEcCChHHHHhhcCCceEEcCCCceEEeCcccCCceEEEEEecC-ccC
Q 018490 144 QVDCLLITQSLDDHCHLKTLKPLSKMSPNLKVIATPNAKTLLDPLFQNVTYVEPGQSSEIEGRNGSKLRVKATAGP-VLG 222 (355)
Q Consensus 144 ~iD~VlISH~H~DHld~~tl~~l~~~~~~~~v~~~~~~~~~l~~~~~~v~~l~~~e~~~l~~~~~~~l~i~~~pa~-~~g 222 (355)
++++|++||.|.||+ +++..|.+++ ++++|++... ........+..++++.++ +.+|++++.. |+.
T Consensus 43 ~l~~Il~TH~H~DHi--gG~~~l~~~~-~~~V~~~~~~-----~~~~~~~~v~~g~~~~~g-----~~~i~v~~tpGHT~ 109 (248)
T TIGR03413 43 TLTAILLTHHHHDHV--GGVAELLEAF-PAPVYGPAEE-----RIPGITHPVKDGDTVTLG-----GLEFEVLAVPGHTL 109 (248)
T ss_pred eeeEEEeCCCCcccc--CCHHHHHHHC-CCeEEecccc-----cCCCCcEEeCCCCEEEEC-----CEEEEEEECCCCCc
Confidence 589999999999995 7888888776 4889987653 111224667888999997 5566555432 221
Q ss_pred CCCCCCccEEEEEecCCceeEEEcCCCCCCcccccccCCcEEEEccccccCCCceeccCHHHHHHHHHHcCCCE-EEEec
Q 018490 223 PPWQRPENGYLVNSSQGQLTLYYEPHCVYNQNFLEKERSDIIITPVIKQLLPKFTLVSGQEDAVKLAKLLHAKF-IVPMK 301 (355)
Q Consensus 223 ~~~~~~~~g~~i~~~~~~~~i~~sGDt~~~~~~~~~~~~Dl~~l~~g~~~~~~~~~h~~~~ea~~~~~~l~~k~-~ip~H 301 (355)
...+|.++. .+++|+||+.+.... |. .. ..+. -..-++++.++.+.++. ++|-|
T Consensus 110 -----g~i~~~~~~----~~~lftGDtl~~~g~-------------g~-~~-~~~~-~~~~~Sl~~l~~l~~~~~i~pGH 164 (248)
T TIGR03413 110 -----GHIAYYLPD----SPALFCGDTLFSAGC-------------GR-LF-EGTP-EQMYDSLQRLAALPDDTLVYCAH 164 (248)
T ss_pred -----ccEEEEECC----CCEEEEcCccccCCc-------------CC-CC-CCCH-HHHHHHHHHHHcCCCCeEEECCC
Confidence 135777753 379999999865321 11 00 0000 01234555666677775 68888
Q ss_pred cCCc
Q 018490 302 NGDL 305 (355)
Q Consensus 302 ~~~f 305 (355)
-.+.
T Consensus 165 ~~~~ 168 (248)
T TIGR03413 165 EYTL 168 (248)
T ss_pred CchH
Confidence 7554
No 33
>TIGR00361 ComEC_Rec2 DNA internalization-related competence protein ComEC/Rec2. The role for this protein in species that are not naturally transformable is unknown.
Probab=98.93 E-value=1.2e-07 Score=99.68 Aligned_cols=208 Identities=11% Similarity=0.131 Sum_probs=123.9
Q ss_pred CceEEEEe--cC-cEEEEEeCCeEEEEccccCCCCCCCcccccccCccccchhhhhhhccccCCCCCCCCCcCEEEecCC
Q 018490 77 DVFKLTYL--EG-NSWLWDLDGVKVLVDPILVGNLDFGIPWLFDAGKKFLKSFQIVLIGMKTLVQLSDLPQVDCLLITQS 153 (355)
Q Consensus 77 ~~~~itwl--Gh-ss~li~~~g~~iLiDP~~sg~~~~p~~~~~~g~~~r~~~~~~~~~g~~~~~~~~~lp~iD~VlISH~ 153 (355)
++.+|+++ || .|++|+.+++++|||. |... +..-. ..+.+.+ .+....+. +|+|++||.
T Consensus 438 ~~~~v~~lDVGqGdaili~~~~~~iLIDt---G~~~-~~~~~---~~~~l~p----------~L~~~Gi~-ID~lilTH~ 499 (662)
T TIGR00361 438 SSWQVDMLDVGQGLAMFIGANGKGILYDT---GEPW-REGSL---GEKVIIP----------FLTAKGIK-LEALILSHA 499 (662)
T ss_pred CCEEEEEEecCCceEEEEEECCeEEEEeC---CCCC-CCCCc---cHHHHHH----------HHHHcCCC-cCEEEECCC
Confidence 35677776 54 5888999999999999 5321 10000 1111222 12234454 999999999
Q ss_pred CCCCCChhhHHHhhhcCCCceEEEcCChHHHHhhcCCceEEcCCCceEEeCcccCCceEEEEE-ecCccCCCCCCCccEE
Q 018490 154 LDDHCHLKTLKPLSKMSPNLKVIATPNAKTLLDPLFQNVTYVEPGQSSEIEGRNGSKLRVKAT-AGPVLGPPWQRPENGY 232 (355)
Q Consensus 154 H~DHld~~tl~~l~~~~~~~~v~~~~~~~~~l~~~~~~v~~l~~~e~~~l~~~~~~~l~i~~~-pa~~~g~~~~~~~~g~ 232 (355)
|.|| .+++..+.+.++-.+++.+.. . ...+..+.++..|+..+++ +++++++ |..... ...|..|.
T Consensus 500 d~DH--iGGl~~ll~~~~v~~i~~~~~-~---~~~~~~~~~~~~G~~~~~~-----~~~~~vL~P~~~~~--~~~N~~S~ 566 (662)
T TIGR00361 500 DQDH--IGGAEIILKHHPVKRLVIPKG-F---VEEGVAIEECKRGDVWQWQ-----GLQFHVLSPEAPDP--ASKNNHSC 566 (662)
T ss_pred chhh--hCcHHHHHHhCCccEEEeccc-h---hhCCCceEecCCCCEEeEC-----CEEEEEECCCCccC--CCCCCCce
Confidence 9999 588888888764445665433 1 1112345678888888887 7888777 322111 12234444
Q ss_pred E--EEecCCceeEEEcCCCCCCcc--cccc---cCCcEEEEccccccCCCceeccCHHHHHHHHHHcCCCEEEEeccCCc
Q 018490 233 L--VNSSQGQLTLYYEPHCVYNQN--FLEK---ERSDIIITPVIKQLLPKFTLVSGQEDAVKLAKLLHAKFIVPMKNGDL 305 (355)
Q Consensus 233 ~--i~~~~~~~~i~~sGDt~~~~~--~~~~---~~~Dl~~l~~g~~~~~~~~~h~~~~ea~~~~~~l~~k~~ip~H~~~f 305 (355)
+ ++.. +.+++++||.....+ +.+. .+.|++.++--|. .+ .+ ..+.++.++|+.+|-.--..
T Consensus 567 vl~i~~~--~~~~L~tGD~~~~~E~~l~~~~~~l~~dvLk~~HHGS----~~--Ss---s~~fl~~v~P~~aiiS~g~~- 634 (662)
T TIGR00361 567 VLWVDDG--GNSWLLTGDLEAEGEQEVMRVFPNIKADVLQVGHHGS----KT--ST---SEELIQQVQPKVAIISAGRN- 634 (662)
T ss_pred EEEEEEC--CeeEEEecCCCHHHHHHHHhcccCcCccEEEeCCCCC----CC--CC---hHHHHHhcCCCEEEEECCCC-
Confidence 4 4554 789999999987432 2221 2678887765331 11 12 24778889999877543211
Q ss_pred cccccccccccccCCHHHHHHHHHhcCCCCeEe
Q 018490 306 DSKGFLASIIQSEGTVESFKELLSKELPDAQLL 338 (355)
Q Consensus 306 ~~~g~l~~~~~~~~~~~~~~~~~~~~~~~~~~~ 338 (355)
+ .|.-|.++..+..++. ++++.
T Consensus 635 N---------~yghP~~~vl~rl~~~--g~~~~ 656 (662)
T TIGR00361 635 N---------RWHHPHQKVLQRLQRH--SIRVL 656 (662)
T ss_pred C---------CCCCChHHHHHHHHHC--CCeEE
Confidence 1 2344666666666664 45543
No 34
>KOG2121 consensus Predicted metal-dependent hydrolase (beta-lactamase superfamily) [General function prediction only]
Probab=98.92 E-value=5.8e-10 Score=113.39 Aligned_cols=211 Identities=17% Similarity=0.164 Sum_probs=124.4
Q ss_pred CCceEEEEecC-----------cEEEEEeCCeE-EEEccccCCCCCCCcccccccCccccchhhhhhhccccCCCCCCCC
Q 018490 76 TDVFKLTYLEG-----------NSWLWDLDGVK-VLVDPILVGNLDFGIPWLFDAGKKFLKSFQIVLIGMKTLVQLSDLP 143 (355)
Q Consensus 76 ~~~~~itwlGh-----------ss~li~~~g~~-iLiDP~~sg~~~~p~~~~~~g~~~r~~~~~~~~~g~~~~~~~~~lp 143 (355)
.+.++|.+||. |+++++++... ||.|+ |.+++ ..+ .| .+ |++.. ...+.
T Consensus 440 ~~~~eIi~LGTGSaiPskyRNVSS~lv~i~~~~~IlLDC---GEgTl--gql-----~R--~Y-----G~~~~--~~~lr 500 (746)
T KOG2121|consen 440 KKDPEIIFLGTGSAIPSKYRNVSSILVRIDSDDSILLDC---GEGTL--GQL-----VR--HY-----GVENV--DTALR 500 (746)
T ss_pred cCCcEEEEecCCccCCCcccceEEEEEeccCCccEEeec---CCchH--HHH-----HH--Hh-----hhcch--HHHHH
Confidence 35789999996 68999996655 99999 76652 111 11 11 11111 22345
Q ss_pred CcCEEEecCCCCCCCChhhHHHhhhc---CC-----CceEEEcCChHHHHhhcC-------CceEEcC-CCceEE-----
Q 018490 144 QVDCLLITQSLDDHCHLKTLKPLSKM---SP-----NLKVIATPNAKTLLDPLF-------QNVTYVE-PGQSSE----- 202 (355)
Q Consensus 144 ~iD~VlISH~H~DHld~~tl~~l~~~---~~-----~~~v~~~~~~~~~l~~~~-------~~v~~l~-~~e~~~----- 202 (355)
++-+|+|||.|.||- .+-+..|+++ .+ .+-++++.....+|+.|- ..+.-+. .++.+.
T Consensus 501 ~LraI~ISHlHADHh-~Gl~~vL~~r~k~~k~~~~~pl~vv~P~ql~~wl~~y~~~~~~~~~~~~~i~~~g~lf~~~s~~ 579 (746)
T KOG2121|consen 501 KLRAIFISHLHADHH-LGLISVLQARTKLLKGVENSPLLVVAPRQLKKWLQEYHRCPSFPASSVAKIGAPGALFAQKSPD 579 (746)
T ss_pred hHHHHHHHhhccccc-ccHHHHHHHHHHhccccccCceEEeChHHHHHHHHHHhcCcccchhhhhhhcCchhhhhccCcc
Confidence 788999999999995 2222223221 11 122333334445777662 0011111 111111
Q ss_pred ------eCc--ccCCceEEEEEecCccCCCCCCCccEEEEEecCCceeEEEcCCCCCCccccccc-CCcEEEEccccccC
Q 018490 203 ------IEG--RNGSKLRVKATAGPVLGPPWQRPENGYLVNSSQGQLTLYYEPHCVYNQNFLEKE-RSDIIITPVIKQLL 273 (355)
Q Consensus 203 ------l~~--~~~~~l~i~~~pa~~~g~~~~~~~~g~~i~~~~~~~~i~~sGDt~~~~~~~~~~-~~Dl~~l~~g~~~~ 273 (355)
+.. ...+...|...|+.|... ..|..|.... +.+|.|+|||..++.+.+++ +.||+|.|..=...
T Consensus 580 s~~~~~~~~~l~~~~l~~i~tc~viHCp~-----syg~~i~~~~-~~Ki~YSGDTrP~~~~v~~g~datlLIHEAT~ED~ 653 (746)
T KOG2121|consen 580 SVPERLLSYLLRELGLESIQTCPVIHCPQ-----SYGCSITHGS-GWKIVYSGDTRPCEDLVKAGKDATLLIHEATLEDD 653 (746)
T ss_pred ccchhhhhHHHHhcCceeEEecCcEecCh-----hhceeEeccc-ceEEEEcCCCCCchhHhhhccCCceEEeehhhchh
Confidence 000 001134454455555421 2355565543 57999999999999999988 99999998741100
Q ss_pred --C--CceeccCHHHHHHHHHHcCCCEEEEeccCCcccccccc
Q 018490 274 --P--KFTLVSGQEDAVKLAKLLHAKFIVPMKNGDLDSKGFLA 312 (355)
Q Consensus 274 --~--~~~~h~~~~ea~~~~~~l~~k~~ip~H~~~f~~~g~l~ 312 (355)
. .-.-|.+..||+++.+..++|.+|.+|++--....+|.
T Consensus 654 l~EeAv~k~HST~sEAi~V~~~m~ar~liLTHFSQRY~K~pl~ 696 (746)
T KOG2121|consen 654 LEEEAVEKGHSTTSEAISVAKKMNAKRLILTHFSQRYPKVPLP 696 (746)
T ss_pred HHHHHHHhCCCCHHHHHHHHHhccchhhhhhhhhcccCCCCCC
Confidence 0 01239999999999999999999999998654444443
No 35
>PRK11539 ComEC family competence protein; Provisional
Probab=98.92 E-value=1e-07 Score=101.50 Aligned_cols=214 Identities=13% Similarity=0.140 Sum_probs=125.7
Q ss_pred CCceEEEEe--cC-cEEEEEeCCeEEEEccccCCCCCCCcccccccCccccchhhhhhhccccCCCCCCCCCcCEEEecC
Q 018490 76 TDVFKLTYL--EG-NSWLWDLDGVKVLVDPILVGNLDFGIPWLFDAGKKFLKSFQIVLIGMKTLVQLSDLPQVDCLLITQ 152 (355)
Q Consensus 76 ~~~~~itwl--Gh-ss~li~~~g~~iLiDP~~sg~~~~p~~~~~~g~~~r~~~~~~~~~g~~~~~~~~~lp~iD~VlISH 152 (355)
+.+.+|+.+ || .+++|+.+|+++|+|+ |... +. . +...+.+.+ .+....+ ++|+|+|||
T Consensus 498 ~~~~~v~~lDVGqG~a~li~~~~~~lLiDt---G~~~-~~-~--~~~~~~i~P----------~L~~~Gi-~lD~lilSH 559 (755)
T PRK11539 498 EYEWRVDMLDVGHGLAVVIERNGKAILYDT---GNAW-PT-G--DSAQQVIIP----------WLRWHGL-TPEGIILSH 559 (755)
T ss_pred CCcEEEEEEEccCceEEEEEECCEEEEEeC---CCCC-CC-C--cchHHHHHH----------HHHHcCC-CcCEEEeCC
Confidence 456777775 66 5778999999999999 5321 10 0 001111222 1223445 599999999
Q ss_pred CCCCCCChhhHHHhhhcCCCceEEEcCChHHHHhhcCCceEEcCCCceEEeCcccCCceEEEEE-ecCccCCCCCCCccE
Q 018490 153 SLDDHCHLKTLKPLSKMSPNLKVIATPNAKTLLDPLFQNVTYVEPGQSSEIEGRNGSKLRVKAT-AGPVLGPPWQRPENG 231 (355)
Q Consensus 153 ~H~DHld~~tl~~l~~~~~~~~v~~~~~~~~~l~~~~~~v~~l~~~e~~~l~~~~~~~l~i~~~-pa~~~g~~~~~~~~g 231 (355)
.|.|| .+++..+.+.+|..+++.+.... +...+..|+..+.+ +++++++ |..+..+ ..|..|
T Consensus 560 ~d~DH--~GGl~~Ll~~~~~~~i~~~~~~~--------~~~~~~~g~~~~~~-----~~~~~vL~P~~~~~~--~~N~~S 622 (755)
T PRK11539 560 EHLDH--RGGLASLLHAWPMAWIRSPLNWA--------NHLPCVRGEQWQWQ-----GLTFSVHWPLEQSND--AGNNDS 622 (755)
T ss_pred CCccc--CCCHHHHHHhCCcceeeccCccc--------CcccccCCCeEeEC-----CEEEEEEecCcccCC--CCCCcc
Confidence 99999 57888888877666676543211 12335567777776 7888776 3222211 123444
Q ss_pred EEEEecCCceeEEEcCCCCCCcc--cccc----cCCcEEEEccccccCCCceeccCHHHHHHHHHHcCCCEEEEeccCCc
Q 018490 232 YLVNSSQGQLTLYYEPHCVYNQN--FLEK----ERSDIIITPVIKQLLPKFTLVSGQEDAVKLAKLLHAKFIVPMKNGDL 305 (355)
Q Consensus 232 ~~i~~~~~~~~i~~sGDt~~~~~--~~~~----~~~Dl~~l~~g~~~~~~~~~h~~~~ea~~~~~~l~~k~~ip~H~~~f 305 (355)
.++....++.+++++||.....+ +.+. .+.|++.+|--|. -+ .+ ..+.++.++|+.+|-.- |..
T Consensus 623 ~Vl~i~~~~~~~LltGDi~~~~E~~Ll~~~~~~l~~dvL~vpHHGS----~t--Ss---s~~fl~~v~P~~aiiS~-g~~ 692 (755)
T PRK11539 623 CVIRVDDGKHSILLTGDLEAQAEQKLLSRYWQQLAATLLQVPHHGS----NT--SS---SLPFIRAVNGKVALASA-SRY 692 (755)
T ss_pred EEEEEEECCEEEEEEeCCChHHHHHHHhcCccCcCCCEEEeCCCCC----CC--CC---hHHHHHhcCCCEEEEeC-CCC
Confidence 44433333789999999865432 2221 2688888775331 11 12 24688889999987644 222
Q ss_pred cccccccccccccCCHHHHHHHHHhcCCCCeEe-ccCCCCe
Q 018490 306 DSKGFLASIIQSEGTVESFKELLSKELPDAQLL-EPTPGEP 345 (355)
Q Consensus 306 ~~~g~l~~~~~~~~~~~~~~~~~~~~~~~~~~~-~p~~Ge~ 345 (355)
+ .|.-|.++..+..++. +++++ |-+.|+.
T Consensus 693 N---------ryghP~~~v~~rl~~~--g~~~~~T~~~G~I 722 (755)
T PRK11539 693 N---------AWRLPSVKVKQRYQQQ--GYQWRDTPHSGQL 722 (755)
T ss_pred C---------CCCCCCHHHHHHHHHc--CCeEEEcCCCCcE
Confidence 2 4455666666666664 44433 3344543
No 36
>PLN02398 hydroxyacylglutathione hydrolase
Probab=98.91 E-value=4.5e-08 Score=93.90 Aligned_cols=126 Identities=17% Similarity=0.126 Sum_probs=80.3
Q ss_pred CcCEEEecCCCCCCCChhhHHHhhhcCCCceEEEcCChHHHHhhcCCceEEcCCCceEEeCcccCCceEEEEEecCccCC
Q 018490 144 QVDCLLITQSLDDHCHLKTLKPLSKMSPNLKVIATPNAKTLLDPLFQNVTYVEPGQSSEIEGRNGSKLRVKATAGPVLGP 223 (355)
Q Consensus 144 ~iD~VlISH~H~DHld~~tl~~l~~~~~~~~v~~~~~~~~~l~~~~~~v~~l~~~e~~~l~~~~~~~l~i~~~pa~~~g~ 223 (355)
++++||+||.|+|| .+++..|.+++ +++||++......+.. .-..++.|+.+.++ +..+++..+||+..
T Consensus 121 ~L~~ILlTH~H~DH--~GG~~~L~~~~-ga~V~g~~~~~~~i~~---~d~~v~dGd~i~lg---g~~l~vi~tPGHT~-- 189 (329)
T PLN02398 121 NLTYILNTHHHYDH--TGGNLELKARY-GAKVIGSAVDKDRIPG---IDIVLKDGDKWMFA---GHEVLVMETPGHTR-- 189 (329)
T ss_pred CceEEEECCCCchh--hCCHHHHHHhc-CCEEEEehHHhhhccC---CcEEeCCCCEEEEC---CeEEEEEeCCCcCC--
Confidence 68999999999999 58999998876 7899998764433321 12457788888887 12344555565321
Q ss_pred CCCCCccEEEEEecCCceeEEEcCCCCCCcccccccCCcEEEEccccccCCCceeccCHH---HHHHHHHHcCCCE-EEE
Q 018490 224 PWQRPENGYLVNSSQGQLTLYYEPHCVYNQNFLEKERSDIIITPVIKQLLPKFTLVSGQE---DAVKLAKLLHAKF-IVP 299 (355)
Q Consensus 224 ~~~~~~~g~~i~~~~~~~~i~~sGDt~~~~~~~~~~~~Dl~~l~~g~~~~~~~~~h~~~~---ea~~~~~~l~~k~-~ip 299 (355)
...+|.+.. ..++|+||+-+.... |. . +. -+++ ++++.+..+.++. ++|
T Consensus 190 ----GhI~~~~~~----~~vLFtGDtLf~~g~-------------Gr--~--fe--g~~~~~~~SL~rL~~L~~~t~Vyp 242 (329)
T PLN02398 190 ----GHISFYFPG----SGAIFTGDTLFSLSC-------------GK--L--FE--GTPEQMLSSLQKIISLPDDTNIYC 242 (329)
T ss_pred ----CCEEEEECC----CCEEEECCCcCCCCc-------------CC--C--CC--CCHHHHHHHHHHHHcCCCCeEEEC
Confidence 135776643 368999999875321 11 0 00 1233 4455555666664 679
Q ss_pred eccCCccc
Q 018490 300 MKNGDLDS 307 (355)
Q Consensus 300 ~H~~~f~~ 307 (355)
-|-.+...
T Consensus 243 GHgyt~~N 250 (329)
T PLN02398 243 GHEYTLSN 250 (329)
T ss_pred CCCChhcc
Confidence 99876543
No 37
>KOG1137 consensus mRNA cleavage and polyadenylation factor II complex, BRR5 (CPSF subunit) [RNA processing and modification]
Probab=98.90 E-value=1.4e-08 Score=100.20 Aligned_cols=160 Identities=18% Similarity=0.209 Sum_probs=107.2
Q ss_pred CCceEEEEec------CcEEEEEeCCeEEEEccccCCCCCCCcccccccCccccchhhhhhhccccCCCCCCCCCcCEEE
Q 018490 76 TDVFKLTYLE------GNSWLWDLDGVKVLVDPILVGNLDFGIPWLFDAGKKFLKSFQIVLIGMKTLVQLSDLPQVDCLL 149 (355)
Q Consensus 76 ~~~~~itwlG------hss~li~~~g~~iLiDP~~sg~~~~p~~~~~~g~~~r~~~~~~~~~g~~~~~~~~~lp~iD~Vl 149 (355)
.+.+.++-|| -||.++|+.|++|+.||.... + .+.. .++ +-++.-|++.+|.++
T Consensus 11 ~d~l~~~pLGag~EVGRSC~ile~kGk~iMld~gvhp-a---ysg~--------asl--------pf~d~vd~s~id~ll 70 (668)
T KOG1137|consen 11 SDQLKFTPLGAGNEVGRSCHILEYKGKTIMLDCGVHP-A---YSGM--------ASL--------PFYDEVDLSAIDPLL 70 (668)
T ss_pred CCcEEEEECCCCcccCceEEEEEecCeEEEeccccCc-c---cccc--------ccc--------cchhhcccccccHHH
Confidence 4566777775 599999999999999994431 1 1111 111 345566788999999
Q ss_pred ecCCCCCCCChhhHHHhhhcC-CCceEEEcCChHH---HHhh-c---------------------CCceEEcCCCceEEe
Q 018490 150 ITQSLDDHCHLKTLKPLSKMS-PNLKVIATPNAKT---LLDP-L---------------------FQNVTYVEPGQSSEI 203 (355)
Q Consensus 150 ISH~H~DHld~~tl~~l~~~~-~~~~v~~~~~~~~---~l~~-~---------------------~~~v~~l~~~e~~~l 203 (355)
|||.|.||+ +.+..+.++. -.-++|.+..+.. +|-. . ..++..++-.|.+++
T Consensus 71 IthFhldh~--aslp~~~qkTsf~grvfmth~TkAi~kwllsdyvrvs~~s~~~~Ly~e~dl~~s~dKie~idfhe~~ev 148 (668)
T KOG1137|consen 71 ITHFHLDHA--ASLPFTLQKTSFIGRVFMTHPTKAIYKWLLSDYVRVSNRSGDDRLYTEGDLMESMDKIETIDFHETVEV 148 (668)
T ss_pred Hhhhhhhhc--ccccceeeeccccceeEEecchHHHHHhhhhcceEeeeccCccccccchhHHHhhhhheeeeecccccc
Confidence 999999996 7777766542 1345666554432 2211 1 135667777777777
Q ss_pred CcccCCceEEEEEecCccCCCCCCCccEEEEEecCCceeEEEcCCCC--CCcccccc--c--CCcEEEEccc
Q 018490 204 EGRNGSKLRVKATAGPVLGPPWQRPENGYLVNSSQGQLTLYYEPHCV--YNQNFLEK--E--RSDIIITPVI 269 (355)
Q Consensus 204 ~~~~~~~l~i~~~pa~~~g~~~~~~~~g~~i~~~~~~~~i~~sGDt~--~~~~~~~~--~--~~Dl~~l~~g 269 (355)
+ +++|++..+-|.. ..|-|+++.. |.+|+|+||-. ++.++... . .+|+++.+-.
T Consensus 149 ~-----gIkf~p~~aGhVl-----gacMf~veia--gv~lLyTGd~sreeDrhl~aae~P~~~~dvli~est 208 (668)
T KOG1137|consen 149 N-----GIKFWPYHAGHVL-----GACMFMVEIA--GVRLLYTGDYSREEDRHLIAAEMPPTGPDVLITEST 208 (668)
T ss_pred C-----CeEEEeeccchhh-----hheeeeeeec--eEEEEeccccchhhcccccchhCCCCCccEEEEEee
Confidence 6 8999888654431 1467999998 79999999954 44455432 2 7999998763
No 38
>PLN02469 hydroxyacylglutathione hydrolase
Probab=98.90 E-value=3e-08 Score=92.45 Aligned_cols=92 Identities=16% Similarity=0.197 Sum_probs=62.6
Q ss_pred CcCEEEecCCCCCCCChhhHHHhhhcCCCceEEEcCChHHHHhhcCCceEEcCCCceEEeCcccCC--ceEEEEEecCcc
Q 018490 144 QVDCLLITQSLDDHCHLKTLKPLSKMSPNLKVIATPNAKTLLDPLFQNVTYVEPGQSSEIEGRNGS--KLRVKATAGPVL 221 (355)
Q Consensus 144 ~iD~VlISH~H~DHld~~tl~~l~~~~~~~~v~~~~~~~~~l~~~~~~v~~l~~~e~~~l~~~~~~--~l~i~~~pa~~~ 221 (355)
++++||+||.|+|| .+++..|.+++++++||++.... +. + ....+..++.+.++ + .+++..+||+..
T Consensus 46 ~l~~Il~TH~H~DH--~gG~~~l~~~~~~~~V~~~~~~~--~~--~-~~~~v~~gd~i~lg----~~~~~~vi~tPGHT~ 114 (258)
T PLN02469 46 KIKLVLTTHHHWDH--AGGNEKIKKLVPGIKVYGGSLDN--VK--G-CTHPVENGDKLSLG----KDVNILALHTPCHTK 114 (258)
T ss_pred cccEEEecCCCCcc--ccCHHHHHHHCCCCEEEEechhc--CC--C-CCeEeCCCCEEEEC----CceEEEEEECCCCCC
Confidence 68999999999999 58899998877789999865321 10 1 12457778888886 2 255566666421
Q ss_pred CCCCCCCccEEEEEecCCceeEEEcCCCCCC
Q 018490 222 GPPWQRPENGYLVNSSQGQLTLYYEPHCVYN 252 (355)
Q Consensus 222 g~~~~~~~~g~~i~~~~~~~~i~~sGDt~~~ 252 (355)
...+|.+....+...++|+||+-+.
T Consensus 115 ------ghi~~~~~~~~~~~~~lFtGDtLf~ 139 (258)
T PLN02469 115 ------GHISYYVTGKEGEDPAVFTGDTLFI 139 (258)
T ss_pred ------CCEEEEeccCCCCCCEEEecCcccC
Confidence 1357877542112469999998764
No 39
>PLN02962 hydroxyacylglutathione hydrolase
Probab=98.77 E-value=1.1e-07 Score=88.29 Aligned_cols=161 Identities=19% Similarity=0.214 Sum_probs=94.2
Q ss_pred cCcEEEEEe----CCeEEEEccccCCCCCCCcccccccCccccchhhhhhhccccCCCCCCCCCcCEEEecCCCCCCCCh
Q 018490 85 EGNSWLWDL----DGVKVLVDPILVGNLDFGIPWLFDAGKKFLKSFQIVLIGMKTLVQLSDLPQVDCLLITQSLDDHCHL 160 (355)
Q Consensus 85 Ghss~li~~----~g~~iLiDP~~sg~~~~p~~~~~~g~~~r~~~~~~~~~g~~~~~~~~~lp~iD~VlISH~H~DHld~ 160 (355)
+++||+|-. .+..+||||.. .. ...+ +..+. -..+ ++.+||+||.|.|| .
T Consensus 22 ~~~~Yll~d~~~~~~~avlIDP~~---~~--~~~~-------l~~l~-----------~~g~-~i~~Il~TH~H~DH--i 75 (251)
T PLN02962 22 STYTYLLADVSHPDKPALLIDPVD---KT--VDRD-------LSLVK-----------ELGL-KLIYAMNTHVHADH--V 75 (251)
T ss_pred eeEEEEEEeCCCCCCEEEEECCCC---Cc--HHHH-------HHHHH-----------HCCC-eeEEEEcCCCCchh--H
Confidence 678999864 36789999932 11 0111 11111 1122 57899999999999 5
Q ss_pred hhHHHhhhcCCCceEEEcCChHHHHhhcCCceEEcCCCceEEeCcccCCceEE--EEEecCccCCCCCCCccEEEEEec-
Q 018490 161 KTLKPLSKMSPNLKVIATPNAKTLLDPLFQNVTYVEPGQSSEIEGRNGSKLRV--KATAGPVLGPPWQRPENGYLVNSS- 237 (355)
Q Consensus 161 ~tl~~l~~~~~~~~v~~~~~~~~~l~~~~~~v~~l~~~e~~~l~~~~~~~l~i--~~~pa~~~g~~~~~~~~g~~i~~~- 237 (355)
+.+..|.++++++++++..... . .--..++.++.+.++ ++++ ..+|++.. ...+|++...
T Consensus 76 gg~~~l~~~~~~a~v~~~~~~~-----~-~~d~~l~~g~~i~~g-----~~~l~vi~tPGHT~------g~v~~~~~d~~ 138 (251)
T PLN02962 76 TGTGLLKTKLPGVKSIISKASG-----S-KADLFVEPGDKIYFG-----DLYLEVRATPGHTA------GCVTYVTGEGP 138 (251)
T ss_pred HHHHHHHHHCCCCeEEeccccC-----C-CCCEEeCCCCEEEEC-----CEEEEEEECCCCCc------CcEEEEeccCC
Confidence 8888898776688888865321 0 112347788889987 5544 45555321 1357776431
Q ss_pred -CCceeEEEcCCCCCCcccccccCCcEEEEccccccCCCceeccCHHHHH-HHHHHcCCC-EEEEecc
Q 018490 238 -QGQLTLYYEPHCVYNQNFLEKERSDIIITPVIKQLLPKFTLVSGQEDAV-KLAKLLHAK-FIVPMKN 302 (355)
Q Consensus 238 -~~~~~i~~sGDt~~~~~~~~~~~~Dl~~l~~g~~~~~~~~~h~~~~ea~-~~~~~l~~k-~~ip~H~ 302 (355)
....+++|+||+-+.... +.+|+ + ++ +. ...-+++ +.+..+.++ +++|-|.
T Consensus 139 ~~~~~~~lftGD~Lf~~g~---Gr~d~---~-~g------~~-~~l~~Sl~~~l~~L~~~~~i~PGHg 192 (251)
T PLN02962 139 DQPQPRMAFTGDALLIRGC---GRTDF---Q-GG------SS-DQLYKSVHSQIFTLPKDTLIYPAHD 192 (251)
T ss_pred CCCccceEEECCeeccCCc---CCCCC---C-CC------CH-HHHHHHHHHHHHcCCCCeEEECCCC
Confidence 112469999998764322 33442 1 11 00 0123444 355567665 5899997
No 40
>KOG1136 consensus Predicted cleavage and polyadenylation specificity factor (CPSF subunit) [RNA processing and modification]
Probab=98.77 E-value=3.2e-07 Score=85.93 Aligned_cols=156 Identities=16% Similarity=0.282 Sum_probs=96.6
Q ss_pred ecCcEEEEEeCCeEEEEccccCCCCCCCcccccccCccccchhhhhhhccccCCCC-CCC-CCcCEEEecCCCCCCCChh
Q 018490 84 LEGNSWLWDLDGVKVLVDPILVGNLDFGIPWLFDAGKKFLKSFQIVLIGMKTLVQL-SDL-PQVDCLLITQSLDDHCHLK 161 (355)
Q Consensus 84 lGhss~li~~~g~~iLiDP~~sg~~~~p~~~~~~g~~~r~~~~~~~~~g~~~~~~~-~~l-p~iD~VlISH~H~DHld~~ 161 (355)
+|-||+|+.++|++|++|+...- . + ...||+..|. .++. .++ .-||.|+|||.|.||| +
T Consensus 15 vGrSCilvsi~Gk~iM~DCGMHM--G----~---nD~rRfPdFS--------yI~~~g~~~~~idCvIIsHFHlDHc--G 75 (501)
T KOG1136|consen 15 VGRSCILVSIGGKNIMFDCGMHM--G----F---NDDRRFPDFS--------YISKSGRFTDAIDCVIISHFHLDHC--G 75 (501)
T ss_pred cCceEEEEEECCcEEEEeccccc--c----c---CccccCCCce--------eecCCCCcccceeEEEEeeeccccc--c
Confidence 36799999999999999995431 0 0 0112222221 1111 112 2689999999999998 6
Q ss_pred hHHHhhhcC-CCceEEEcCChHH----HHhhc--------C--------------CceEEcCCCceEEeCcccCCceEEE
Q 018490 162 TLKPLSKMS-PNLKVIATPNAKT----LLDPL--------F--------------QNVTYVEPGQSSEIEGRNGSKLRVK 214 (355)
Q Consensus 162 tl~~l~~~~-~~~~v~~~~~~~~----~l~~~--------~--------------~~v~~l~~~e~~~l~~~~~~~l~i~ 214 (355)
.|..+.+.. =+-++|.+-.+.. .|+.. | .+|+.++-.|++.++ .++.|+
T Consensus 76 aLPyfsEv~GY~GPIYMt~PTkaicPvlLeDyRkv~vd~kGe~n~FT~q~I~nCMKKVv~i~l~qt~~vD----~dl~Ir 151 (501)
T KOG1136|consen 76 ALPYFSEVVGYDGPIYMTYPTKAICPVLLEDYRKVAVDRKGESNFFTTQDIKNCMKKVVAIDLHQTIQVD----EDLQIR 151 (501)
T ss_pred cccchHhhhCCCCceEEecchhhhchHHHHHHHHHhccccCcccceeHHHHHHHHhheeEeeehheEEec----ccceee
Confidence 666665431 1456776644322 22221 1 368888888999987 589998
Q ss_pred EEecCccCCCCCCCccEEEEEecCCceeEEEcCCCCCCc--ccc----cccCCcEEEEccc
Q 018490 215 ATAGPVLGPPWQRPENGYLVNSSQGQLTLYYEPHCVYNQ--NFL----EKERSDIIITPVI 269 (355)
Q Consensus 215 ~~pa~~~g~~~~~~~~g~~i~~~~~~~~i~~sGDt~~~~--~~~----~~~~~Dl~~l~~g 269 (355)
+.-+-|. + ...-|.+..+ ..++.|+||-...+ ++- +..++||++-+..
T Consensus 152 ayYAGHV---L--GAaMf~ikvG--d~svvYTGDYnmTpDrHLGaA~id~~rpdlLIsEST 205 (501)
T KOG1136|consen 152 AYYAGHV---L--GAAMFYIKVG--DQSVVYTGDYNMTPDRHLGAAWIDKCRPDLLISEST 205 (501)
T ss_pred eeecccc---c--ceeEEEEEec--ceeEEEecCccCCcccccchhhhccccCceEEeecc
Confidence 8755432 1 0234555555 57999999976544 332 2238999998863
No 41
>PRK10241 hydroxyacylglutathione hydrolase; Provisional
Probab=98.73 E-value=1.2e-07 Score=88.15 Aligned_cols=125 Identities=20% Similarity=0.264 Sum_probs=75.7
Q ss_pred CcCEEEecCCCCCCCChhhHHHhhhcCCCceEEEcCChHHHHhhcCCceEEcCCCceEEeCcccCCceEEEEEecCccCC
Q 018490 144 QVDCLLITQSLDDHCHLKTLKPLSKMSPNLKVIATPNAKTLLDPLFQNVTYVEPGQSSEIEGRNGSKLRVKATAGPVLGP 223 (355)
Q Consensus 144 ~iD~VlISH~H~DHld~~tl~~l~~~~~~~~v~~~~~~~~~l~~~~~~v~~l~~~e~~~l~~~~~~~l~i~~~pa~~~g~ 223 (355)
++++||+||.|+|| .+++..|.++++.++||++..... ....+.+..++++.++ +..+++..+||+..|
T Consensus 45 ~l~~IllTH~H~DH--igG~~~l~~~~~~~~V~~~~~~~~-----~~~~~~v~~g~~i~ig---~~~~~vi~tPGHT~g- 113 (251)
T PRK10241 45 QPEAIFLTHHHHDH--VGGVKELVEKFPQIVVYGPQETQD-----KGTTQVVKDGETAFVL---GHEFSVFATPGHTLG- 113 (251)
T ss_pred ccCEEEeCCCCchh--hccHHHHHHHCCCCEEEecccccc-----cCCceEeCCCCEEEeC---CcEEEEEEcCCCCcc-
Confidence 57899999999999 578899988877789998654321 1123567788888887 123555555654211
Q ss_pred CCCCCccEEEEEecCCceeEEEcCCCCCCcccccccCCcEEEEccccccCCCceeccCHHHHHHHHHHcCCCE-EEEecc
Q 018490 224 PWQRPENGYLVNSSQGQLTLYYEPHCVYNQNFLEKERSDIIITPVIKQLLPKFTLVSGQEDAVKLAKLLHAKF-IVPMKN 302 (355)
Q Consensus 224 ~~~~~~~g~~i~~~~~~~~i~~sGDt~~~~~~~~~~~~Dl~~l~~g~~~~~~~~~h~~~~ea~~~~~~l~~k~-~ip~H~ 302 (355)
..+|+. + .++|+||+-+.... |. .. ..+. ...-++++.+..+.++. ++|-|-
T Consensus 114 -----hi~~~~--~----~~lFtGDtlf~~g~-------------gr-~f-~g~~-~~~~~Sl~kl~~l~~~t~i~pgH~ 166 (251)
T PRK10241 114 -----HICYFS--K----PYLFCGDTLFSGGC-------------GR-LF-EGTA-SQMYQSLKKINALPDDTLICCAHE 166 (251)
T ss_pred -----ceeeec--C----CcEEEcCeeccCCc-------------CC-CC-CCCH-HHHHHHHHHHHcCCCCEEEECCCC
Confidence 245532 2 47899998765321 11 00 0010 01244555566677876 557787
Q ss_pred CCcc
Q 018490 303 GDLD 306 (355)
Q Consensus 303 ~~f~ 306 (355)
.+..
T Consensus 167 y~~~ 170 (251)
T PRK10241 167 YTLS 170 (251)
T ss_pred Chhh
Confidence 6644
No 42
>COG2333 ComEC Predicted hydrolase (metallo-beta-lactamase superfamily) [General function prediction only]
Probab=98.71 E-value=2.4e-06 Score=80.62 Aligned_cols=203 Identities=15% Similarity=0.175 Sum_probs=120.7
Q ss_pred eEEEE--ecC-cEEEEEeCCeEEEEccccCCCCCCCcccccccCccccchhhhhhhccccCCCCCCCCCcCEEEecCCCC
Q 018490 79 FKLTY--LEG-NSWLWDLDGVKVLVDPILVGNLDFGIPWLFDAGKKFLKSFQIVLIGMKTLVQLSDLPQVDCLLITQSLD 155 (355)
Q Consensus 79 ~~itw--lGh-ss~li~~~g~~iLiDP~~sg~~~~p~~~~~~g~~~r~~~~~~~~~g~~~~~~~~~lp~iD~VlISH~H~ 155 (355)
.++.. .|+ .+++++.++.++|+|+ +... . .+++.| .+.-..+.+||.+++||.|.
T Consensus 44 ~~~~~lDvGqg~a~li~~~~~~~l~dt---g~~~-~--------~~~iip----------~Lk~~GV~~iD~lIlTH~d~ 101 (293)
T COG2333 44 WKVHMLDVGQGLATLIRSEGKTILYDT---GNSM-G--------QDVIIP----------YLKSLGVRKLDQLILTHPDA 101 (293)
T ss_pred ceEEEEEcCCCeEEEEeeCCceEEeec---Cccc-C--------ceeehh----------hHhHcCCccccEEEeccCCc
Confidence 34444 465 4899999999999999 4311 0 011111 12234556899999999999
Q ss_pred CCCChhhHHHhhhcC--CCceEEEcCChHH--HHhhcCCceEEcCCCceEEeCcccCCceEEEEE-ecCccCCCCCCCcc
Q 018490 156 DHCHLKTLKPLSKMS--PNLKVIATPNAKT--LLDPLFQNVTYVEPGQSSEIEGRNGSKLRVKAT-AGPVLGPPWQRPEN 230 (355)
Q Consensus 156 DHld~~tl~~l~~~~--~~~~v~~~~~~~~--~l~~~~~~v~~l~~~e~~~l~~~~~~~l~i~~~-pa~~~g~~~~~~~~ 230 (355)
|| .+++..+.+.+ +.+-++....... .+++.+..+..+.-|+...++ ++.++++ |....++ ..|..
T Consensus 102 DH--iGg~~~vl~~~~v~~~~i~~~~~~~~~~~~~~~~~~~~~~~~G~~~~~~-----~~~f~vl~P~~~~~~--~~N~~ 172 (293)
T COG2333 102 DH--IGGLDEVLKTIKVPELWIYAGSDSTSTFVLRDAGIPVRSCKAGDSWQWG-----GVVFQVLSPVGGVSD--DLNND 172 (293)
T ss_pred cc--cCCHHHHHhhCCCCcEEEeCCCCccchhhhhhcCCceeccccCceEEEC-----CeEEEEEcCCccccc--cccCc
Confidence 99 58888888743 3332322222211 244445678888999999998 7777665 3322222 22333
Q ss_pred EEEEEecCCceeEEEcCCCCCCcc--ccccc---CCcEEEEccccccCCCceeccCHHHHHHHHHHcCCCEEEEeccCCc
Q 018490 231 GYLVNSSQGQLTLYYEPHCVYNQN--FLEKE---RSDIIITPVIKQLLPKFTLVSGQEDAVKLAKLLHAKFIVPMKNGDL 305 (355)
Q Consensus 231 g~~i~~~~~~~~i~~sGDt~~~~~--~~~~~---~~Dl~~l~~g~~~~~~~~~h~~~~ea~~~~~~l~~k~~ip~H~~~f 305 (355)
+.++....++.+++++||..-..+ +.+.+ ..|++-++--+. .-.-...+++.++||+.+-.- |..
T Consensus 173 S~Vl~v~~g~~s~LlTGD~e~~~E~~l~~~~~~l~~dVLkV~HHGS---------~tSss~~Fl~~v~Pk~AliS~-G~~ 242 (293)
T COG2333 173 SCVLRVTFGGNSFLLTGDLEEKGEKLLKKYGPDLRADVLKVGHHGS---------KTSSSLAFLEAVKPKVALISS-GRN 242 (293)
T ss_pred ceEEEEEeCCeeEEEecCCCchhHHHHHhhCCCccceEEEeccCCc---------cccCcHHHHHhcCCcEEEEEe-ecc
Confidence 444433333789999999865433 22222 567776655331 122345778889999866443 222
Q ss_pred cccccccccccccCCHHHHHHHHHhc
Q 018490 306 DSKGFLASIIQSEGTVESFKELLSKE 331 (355)
Q Consensus 306 ~~~g~l~~~~~~~~~~~~~~~~~~~~ 331 (355)
+ .|.-|.++..+.+++.
T Consensus 243 N---------~yghPh~~Vl~rl~~~ 259 (293)
T COG2333 243 N---------RYGHPHQEVLERLQKR 259 (293)
T ss_pred C---------CCCCCcHHHHHHHHhc
Confidence 2 3455666666666663
No 43
>KOG0813 consensus Glyoxylase [General function prediction only]
Probab=98.52 E-value=7.9e-07 Score=81.99 Aligned_cols=132 Identities=14% Similarity=0.177 Sum_probs=81.6
Q ss_pred CCCCcCEEEecCCCCCCCChhhHHHhhhcCC-CceEEEcCChHHHHhhcCCceEEcCCCceEEeCcccCCceEEEEEecC
Q 018490 141 DLPQVDCLLITQSLDDHCHLKTLKPLSKMSP-NLKVIATPNAKTLLDPLFQNVTYVEPGQSSEIEGRNGSKLRVKATAGP 219 (355)
Q Consensus 141 ~lp~iD~VlISH~H~DHld~~tl~~l~~~~~-~~~v~~~~~~~~~l~~~~~~v~~l~~~e~~~l~~~~~~~l~i~~~pa~ 219 (355)
+-..+++||.||.|+||. +++..|.+..+ ++++|... .+....+ -..++.++.+.++ +++|+++++.
T Consensus 48 ~~~~l~~Il~THhH~DHs--GGn~~i~~~~~~~~~v~g~~--~~r~~~i---~~~~~~~e~~~~~-----g~~v~~l~TP 115 (265)
T KOG0813|consen 48 ENRRLTAILTTHHHYDHS--GGNEDIKREIPYDIKVIGGA--DDRIPGI---TRGLKDGETVTVG-----GLEVRCLHTP 115 (265)
T ss_pred ccCceeEEEecccccccc--CcHHHHHhhccCCcEEecCC--hhcCccc---cccCCCCcEEEEC-----CEEEEEEeCC
Confidence 345899999999999994 78888887643 67787764 1111111 1227888999998 7888776553
Q ss_pred -ccCCCCCCCccEEEEEecCCceeEEEcCCCCCCcccccccCCcEEEEccccccCCCceeccCHHHHHHHHHHcCCC-EE
Q 018490 220 -VLGPPWQRPENGYLVNSSQGQLTLYYEPHCVYNQNFLEKERSDIIITPVIKQLLPKFTLVSGQEDAVKLAKLLHAK-FI 297 (355)
Q Consensus 220 -~~g~~~~~~~~g~~i~~~~~~~~i~~sGDt~~~~~~~~~~~~Dl~~l~~g~~~~~~~~~h~~~~ea~~~~~~l~~k-~~ 297 (355)
|. ....+|.+... .+.+..|+||+-+.. -||. .+.. .++....+++.+..|+++ ++
T Consensus 116 gHT-----~~hi~~~~~~~-~~e~~iFtGDtlf~~-------------GcG~-~FEg--t~~~M~~sl~~l~~L~~~t~i 173 (265)
T KOG0813|consen 116 GHT-----AGHICYYVTES-TGERAIFTGDTLFGA-------------GCGR-FFEG--TAEQMDSSLNELIALPDDTRI 173 (265)
T ss_pred Ccc-----CCcEEEEeecC-CCCCeEEeCCceeec-------------Cccc-hhcC--CHHHHHHhHHHhhcCCCCceE
Confidence 21 12467777641 156899999987642 1222 1110 122233444446677777 78
Q ss_pred EEeccCCcc
Q 018490 298 VPMKNGDLD 306 (355)
Q Consensus 298 ip~H~~~f~ 306 (355)
+|-|--+-.
T Consensus 174 ypGHeYt~~ 182 (265)
T KOG0813|consen 174 YPGHEYTKS 182 (265)
T ss_pred ccCcccccc
Confidence 888874433
No 44
>COG0491 GloB Zn-dependent hydrolases, including glyoxylases [General function prediction only]
Probab=98.36 E-value=3.4e-06 Score=76.59 Aligned_cols=96 Identities=21% Similarity=0.285 Sum_probs=59.7
Q ss_pred CcCEEEecCCCCCCCChhhHHHhhhcCCCceEEEcCChHHHHhhc------------C----CceEEcCCCceEEeCccc
Q 018490 144 QVDCLLITQSLDDHCHLKTLKPLSKMSPNLKVIATPNAKTLLDPL------------F----QNVTYVEPGQSSEIEGRN 207 (355)
Q Consensus 144 ~iD~VlISH~H~DHld~~tl~~l~~~~~~~~v~~~~~~~~~l~~~------------~----~~v~~l~~~e~~~l~~~~ 207 (355)
+|++|++||.|+|| .+.+..+.+..+.++++..+......... . .....+..++.+.++
T Consensus 62 ~i~~vilTH~H~DH--~gg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--- 136 (252)
T COG0491 62 DVDAILLTHGHFDH--IGGAAVLKEAFGAAPVIAPAEVPLLLREEILRKAGVTAEAYAAPGASPLRALEDGDELDLG--- 136 (252)
T ss_pred ChheeeecCCchhh--hccHHHHHhhcCCceEEccchhhhhhhcccccccccccccCCCCccccceecCCCCEEEec---
Confidence 79999999999999 58888887654236674444332222111 0 123344466777776
Q ss_pred CCceEEEEEecCccCCCCCCCccEEEEEecCCceeEEEcCCCCCCcc
Q 018490 208 GSKLRVKATAGPVLGPPWQRPENGYLVNSSQGQLTLYYEPHCVYNQN 254 (355)
Q Consensus 208 ~~~l~i~~~pa~~~g~~~~~~~~g~~i~~~~~~~~i~~sGDt~~~~~ 254 (355)
+.++++..+|++.. ...+|.++.+ +++|+||..+...
T Consensus 137 ~~~~~~i~tpGHT~------g~~~~~~~~~----~~l~~gD~~~~~~ 173 (252)
T COG0491 137 GLELEVLHTPGHTP------GHIVFLLEDG----GVLFTGDTLFAGD 173 (252)
T ss_pred CeEEEEEECCCCCC------CeEEEEECCc----cEEEecceeccCC
Confidence 12366666665421 1357777764 3999999887653
No 45
>KOG1135 consensus mRNA cleavage and polyadenylation factor II complex, subunit CFT2 (CPSF subunit) [RNA processing and modification]
Probab=97.88 E-value=0.00012 Score=74.71 Aligned_cols=151 Identities=20% Similarity=0.272 Sum_probs=99.4
Q ss_pred CcEEEEEeCCeEEEEccccCCCCCCCcccccccCccccchhhhhhhccccCCCCCCCCCcCEEEecCCCCCCCChhhHHH
Q 018490 86 GNSWLWDLDGVKVLVDPILVGNLDFGIPWLFDAGKKFLKSFQIVLIGMKTLVQLSDLPQVDCLLITQSLDDHCHLKTLKP 165 (355)
Q Consensus 86 hss~li~~~g~~iLiDP~~sg~~~~p~~~~~~g~~~r~~~~~~~~~g~~~~~~~~~lp~iD~VlISH~H~DHld~~tl~~ 165 (355)
.-|++||++|.+|||||.|... |..+.+ ++. ...++.||+||+||--.=| +++|..
T Consensus 15 ~~cyllqiD~~~iLiDcGwd~~--f~~~~i--------~~l------------~~~i~~iDaILLShpd~~h--lGaLpY 70 (764)
T KOG1135|consen 15 PLCYLLQIDGVRILIDCGWDES--FDMSMI--------KEL------------KPVIPTIDAILLSHPDILH--LGALPY 70 (764)
T ss_pred cceEEEEEcCeEEEEeCCCcch--hccchh--------hhh------------hcccccccEEEecCCChHH--hccchh
Confidence 3489999999999999988543 223332 111 2245789999999988888 477876
Q ss_pred hhhcC-CCceEEEcCChH--------HHHhh-----------------cCCceEEcCCCceEEeCcccCCceEEEEEecC
Q 018490 166 LSKMS-PNLKVIATPNAK--------TLLDP-----------------LFQNVTYVEPGQSSEIEGRNGSKLRVKATAGP 219 (355)
Q Consensus 166 l~~~~-~~~~v~~~~~~~--------~~l~~-----------------~~~~v~~l~~~e~~~l~~~~~~~l~i~~~pa~ 219 (355)
...+. =+++||++-.+. +++.. .|++|++++-.|.+.+.+. +.|++|++.+|-
T Consensus 71 ~~~k~gl~~~VYAT~PV~~mG~m~myD~~~S~~~~~df~l~sldDvd~aFd~I~~LKYsQ~v~L~gk-~~Gl~itaynAG 149 (764)
T KOG1135|consen 71 AVGKLGLNAPVYATLPVIKMGQMFMYDLYRSHGNVGDFDLFSLDDVDAAFDKIIQLKYSQPVALKGK-GSGLTITAYNAG 149 (764)
T ss_pred hHhhCCccceEEEecchhhhhhhhHHHHHhcccccccccccchhhhHHHHhheeeeeccceEEeccc-cCceEEeeecCC
Confidence 65543 257899875432 22222 1358999999999988744 358999998876
Q ss_pred ccCCCCCCCccEEEEEecCCceeEEEcCCCCCCc--c-----cccccCCcEEEEcc
Q 018490 220 VLGPPWQRPENGYLVNSSQGQLTLYYEPHCVYNQ--N-----FLEKERSDIIITPV 268 (355)
Q Consensus 220 ~~g~~~~~~~~g~~i~~~~~~~~i~~sGDt~~~~--~-----~~~~~~~Dl~~l~~ 268 (355)
|+ . ..+-|.|... +..|.|+-|-.... | |..+.++-++|...
T Consensus 150 hm---i--GGsIWkI~k~--~E~ivYavd~NHkKe~HLNG~~l~~l~RPsllITda 198 (764)
T KOG1135|consen 150 HM---I--GGSIWKISKV--GEDIVYAVDFNHKKERHLNGCSLSGLNRPSLLITDA 198 (764)
T ss_pred Cc---c--CceEEEEEec--CceEEEEEecccchhcccCCccccccCCcceEEecc
Confidence 53 1 1245777665 56899988876643 2 22233677776554
No 46
>PF02112 PDEase_II: cAMP phosphodiesterases class-II; InterPro: IPR000396 Cyclic-AMP phosphodiesterase (3.1.4.17 from EC) (PDE) catalyses the hydrolysis of cAMP to the corresponding nucleoside 5' monophosphate. On the basis of sequence similarity, most PDEs can be grouped together [], but some enzymes lie apart from the main family and represent a second distinct class [] that includes PDEs from Dictyostelium and yeast. This entry contains class-II cyclic-AMP phosphodiesterases.; GO: 0004115 3',5'-cyclic-AMP phosphodiesterase activity, 0006198 cAMP catabolic process
Probab=97.83 E-value=0.00046 Score=66.47 Aligned_cols=193 Identities=12% Similarity=0.047 Sum_probs=106.1
Q ss_pred CcCEEEecCCCCCCCChhhHHH----hhhc-CCCceEEEcCChHHHHhhc-CC-------------------ceEEcCCC
Q 018490 144 QVDCLLITQSLDDHCHLKTLKP----LSKM-SPNLKVIATPNAKTLLDPL-FQ-------------------NVTYVEPG 198 (355)
Q Consensus 144 ~iD~VlISH~H~DHld~~tl~~----l~~~-~~~~~v~~~~~~~~~l~~~-~~-------------------~v~~l~~~ 198 (355)
.|...||||.|.||+ .++-- +... ..+-+||+.+.+.+.|++. |. +...+..+
T Consensus 79 ~I~~ylItH~HLDHi--~gLvinsp~~~~~~~~~K~i~gl~~ti~alk~hiFN~~iWPNl~~~~~~~~~~~~~~~~l~~~ 156 (335)
T PF02112_consen 79 HIKGYLITHPHLDHI--AGLVINSPEDYLPNSSPKTIYGLPSTIEALKNHIFNDIIWPNLSDEGEGDYLYKYRYFDLSPG 156 (335)
T ss_pred hhheEEecCCchhhH--HHHHhcCcccccccCCCCcEEECHHHHHHHHHcccCCccCCCCCCcCcccceeeeeeeecccc
Confidence 688999999999995 55421 1110 0245688988888877753 11 23344444
Q ss_pred ceEEeCcc--------cCCceEEEEEecCccCCCCC-CCccEEEEEecCCceeEEEcCCCCCCcc-----cc--------
Q 018490 199 QSSEIEGR--------NGSKLRVKATAGPVLGPPWQ-RPENGYLVNSSQGQLTLYYEPHCVYNQN-----FL-------- 256 (355)
Q Consensus 199 e~~~l~~~--------~~~~l~i~~~pa~~~g~~~~-~~~~g~~i~~~~~~~~i~~sGDt~~~~~-----~~-------- 256 (355)
+...+... ......++++|..|...... -..++|+|+....+..|.|.||++.+.- ..
T Consensus 157 ~~~~~~~~~~s~~~~~~~~~~~v~~~~l~H~~~~~~~~~SsAfli~~~~t~~~il~fGD~e~Ds~s~~~~~~~iW~~~ap 236 (335)
T PF02112_consen 157 ELIPLNNTTLSVIPNEFPNSSSVTPFPLSHGNSVSSPVYSSAFLIRDNITGDEILFFGDTEPDSVSKSPRNQKIWRYAAP 236 (335)
T ss_pred ceeeccccccccccccccccccceeeecCCCCcccCCCcceEEEEEeCCCCCEEEEEeCCCCCccccCchHHHHHHHHHh
Confidence 43333200 00022334455444322100 0146899998755678999999997521 11
Q ss_pred --cccCCcEEEEccccccC-C--CceeccCHHHHHHHHHHcCCC-----------EEEEeccCCccccccccccc-cccC
Q 018490 257 --EKERSDIIITPVIKQLL-P--KFTLVSGQEDAVKLAKLLHAK-----------FIVPMKNGDLDSKGFLASII-QSEG 319 (355)
Q Consensus 257 --~~~~~Dl~~l~~g~~~~-~--~~~~h~~~~ea~~~~~~l~~k-----------~~ip~H~~~f~~~g~l~~~~-~~~~ 319 (355)
..+...-.++||.-... + .-..||+|...++.++.|... .+|-+|--.-. .... +...
T Consensus 237 ~I~~~~LkaI~IEcS~~~~~~d~~LyGHLtP~~Li~EL~~L~~~~~~~~~~L~gL~VIItHIK~~~-----~~~~dpr~~ 311 (335)
T PF02112_consen 237 KIASGKLKAIFIECSYPNSQPDSQLYGHLTPKHLIEELKVLASKVGQTSPPLKGLNVIITHIKPSL-----NDGPDPRDV 311 (335)
T ss_pred hccccccCEEEEEeCCCCCCCchHhhccCCHHHHHHHHHHHHhccccccCCCCCCeEEEEEeCCcc-----cCCCChHHH
Confidence 12377888999942111 1 112399998777766665321 36678876421 1100 0001
Q ss_pred CHHHHHHHHHhcCCCCeEeccCCC
Q 018490 320 TVESFKELLSKELPDAQLLEPTPG 343 (355)
Q Consensus 320 ~~~~~~~~~~~~~~~~~~~~p~~G 343 (355)
-.+.++++.++.+.++++..|..|
T Consensus 312 Il~il~qL~~~n~LGv~fii~~QG 335 (335)
T PF02112_consen 312 ILEILRQLAEENNLGVNFIIPEQG 335 (335)
T ss_pred HHHHHHHHHhccCCceEEEEcCCC
Confidence 123355565555568999988766
No 47
>KOG0814 consensus Glyoxylase [General function prediction only]
Probab=97.60 E-value=7.8e-05 Score=64.20 Aligned_cols=110 Identities=26% Similarity=0.372 Sum_probs=63.9
Q ss_pred CCeEEEEccccCCCCCCCcccccccCccccchhhhhhhccccCCCCCCCC-CcCEEEecCCCCCCCChhhHHHhhhcCCC
Q 018490 94 DGVKVLVDPILVGNLDFGIPWLFDAGKKFLKSFQIVLIGMKTLVQLSDLP-QVDCLLITQSLDDHCHLKTLKPLSKMSPN 172 (355)
Q Consensus 94 ~g~~iLiDP~~sg~~~~p~~~~~~g~~~r~~~~~~~~~g~~~~~~~~~lp-~iD~VlISH~H~DHld~~tl~~l~~~~~~ 172 (355)
.|+.+|||||+. ..+ | ..+ . +.||. ++-+-+-||.|.||. .+-..|+...|.
T Consensus 31 ~~~AviIDPV~e-t~~-----------R---D~q--------l--ikdLgl~LiYa~NTH~HADHi--TGtg~Lkt~~pg 83 (237)
T KOG0814|consen 31 TGKAVIIDPVLE-TVS-----------R---DAQ--------L--IKDLGLDLIYALNTHVHADHI--TGTGLLKTLLPG 83 (237)
T ss_pred CCceEEecchhh-ccc-----------c---hHH--------H--HHhcCceeeeeecceeecccc--cccchHHHhccc
Confidence 688999999985 332 1 011 0 23442 556778999999996 333444443355
Q ss_pred ceEEEcCChHHHHhhcC-CceEEcCCCceEEeCcccCCceEEEEEecCccCCCCCCCcc-EEEEEecCCceeEEEcCCCC
Q 018490 173 LKVIATPNAKTLLDPLF-QNVTYVEPGQSSEIEGRNGSKLRVKATAGPVLGPPWQRPEN-GYLVNSSQGQLTLYYEPHCV 250 (355)
Q Consensus 173 ~~v~~~~~~~~~l~~~~-~~v~~l~~~e~~~l~~~~~~~l~i~~~pa~~~g~~~~~~~~-g~~i~~~~~~~~i~~sGDt~ 250 (355)
++-+++... | ..-.-++.|+.++++ +-.+++.++|++. +.| -|++.. .+..|+||+-
T Consensus 84 ~kSVis~~S-------GakAD~~l~~Gd~i~~G---~~~le~ratPGHT-------~GC~TyV~~d----~~~aFTGDal 142 (237)
T KOG0814|consen 84 CKSVISSAS-------GAKADLHLEDGDIIEIG---GLKLEVRATPGHT-------NGCVTYVEHD----LRMAFTGDAL 142 (237)
T ss_pred HHHHhhhcc-------ccccccccCCCCEEEEc---cEEEEEecCCCCC-------CceEEEEecC----cceeeeccee
Confidence 544333221 2 122446788999998 2235557777642 334 455543 4788899864
Q ss_pred C
Q 018490 251 Y 251 (355)
Q Consensus 251 ~ 251 (355)
.
T Consensus 143 L 143 (237)
T KOG0814|consen 143 L 143 (237)
T ss_pred E
Confidence 3
No 48
>KOG1361 consensus Predicted hydrolase involved in interstrand cross-link repair [Replication, recombination and repair]
Probab=97.32 E-value=0.0013 Score=65.72 Aligned_cols=131 Identities=15% Similarity=0.130 Sum_probs=90.0
Q ss_pred CcCEEEecCCCCCCCChhhHHHhhhcCCCceEEEcCChHHHHhhc----CCceEEcCCCceEEeCcccCCceEEEEEecC
Q 018490 144 QVDCLLITQSLDDHCHLKTLKPLSKMSPNLKVIATPNAKTLLDPL----FQNVTYVEPGQSSEIEGRNGSKLRVKATAGP 219 (355)
Q Consensus 144 ~iD~VlISH~H~DHld~~tl~~l~~~~~~~~v~~~~~~~~~l~~~----~~~v~~l~~~e~~~l~~~~~~~l~i~~~pa~ 219 (355)
...+=++||.|.|| +-+|..-.. .-++|+.+.++..+... ...+..++-++.+.+. +++++++++.
T Consensus 112 ~~s~yFLsHFHSDH--y~GL~~sW~---~p~lYCS~ita~Lv~~~~~v~~~~i~~l~l~~~~~i~-----~~~vt~ldAn 181 (481)
T KOG1361|consen 112 GCSAYFLSHFHSDH--YIGLTKSWS---HPPLYCSPITARLVPLKVSVTKQSIQALDLNQPLEIP-----GIQVTLLDAN 181 (481)
T ss_pred ccceeeeecccccc--ccccccccc---CCcccccccchhhhhhhcccChhhceeecCCCceeec-----ceEEEEeccc
Confidence 56789999999999 455543332 33499999988855543 2568888889999998 7999999998
Q ss_pred ccCCCCCCCccEEEEEecCCceeEEEcCCCCCCccccc------ccCCcEEEEccccccCCCceeccCHHHHHHHHHHc
Q 018490 220 VLGPPWQRPENGYLVNSSQGQLTLYYEPHCVYNQNFLE------KERSDIIITPVIKQLLPKFTLVSGQEDAVKLAKLL 292 (355)
Q Consensus 220 ~~g~~~~~~~~g~~i~~~~~~~~i~~sGDt~~~~~~~~------~~~~Dl~~l~~g~~~~~~~~~h~~~~ea~~~~~~l 292 (355)
|... ...|+++... +..++|+||-.+.....+ ...+|.+.+++.. ..|.++. -..+|+++.+.++
T Consensus 182 HCPG-----a~mf~F~~~~-~~~~lhtGDFR~s~~m~~~p~~~~~~~i~~lyLDtTy-cnp~y~F-psq~esvq~v~~~ 252 (481)
T KOG1361|consen 182 HCPG-----AVMFLFELSF-GPCILHTGDFRASADMSKEPALTLEQTIDILYLDTTY-CNPKYDF-PSQEESVQEVVDV 252 (481)
T ss_pred cCCC-----ceEEEeecCC-CceEEecCCcccChhhhhChHHhcCCccceEEEeecc-cCCCCCC-ccHHHHHHHHHHH
Confidence 7521 2457777664 479999999998765443 1389999998742 3443321 1345565555443
No 49
>PF14597 Lactamase_B_5: Metallo-beta-lactamase superfamily; PDB: 2P97_B.
Probab=97.08 E-value=0.0026 Score=55.42 Aligned_cols=156 Identities=16% Similarity=0.244 Sum_probs=79.2
Q ss_pred cCcEEEEEeCCeEEEEccccCCCCCCCcccccccCccccchhhhhhhccccCCCCCCCCCcCEEEecCCCCCCCChhhHH
Q 018490 85 EGNSWLWDLDGVKVLVDPILVGNLDFGIPWLFDAGKKFLKSFQIVLIGMKTLVQLSDLPQVDCLLITQSLDDHCHLKTLK 164 (355)
Q Consensus 85 Ghss~li~~~g~~iLiDP~~sg~~~~p~~~~~~g~~~r~~~~~~~~~g~~~~~~~~~lp~iD~VlISH~H~DHld~~tl~ 164 (355)
+-+|+++..++.+||||| -+.+ -. . .+. ++.+..+++|++|| .|| ..+.+
T Consensus 22 dfng~~~~~p~GnilIDP---~~ls-~~------~---~~~-------------l~a~ggv~~IvLTn--~dH--vR~A~ 71 (199)
T PF14597_consen 22 DFNGHAWRRPEGNILIDP---PPLS-AH------D---WKH-------------LDALGGVAWIVLTN--RDH--VRAAE 71 (199)
T ss_dssp EEEEEEE--TT--EEES---------HH------H---HHH-------------HHHTT--SEEE-SS--GGG---TTHH
T ss_pred CceeEEEEcCCCCEEecC---cccc-HH------H---HHH-------------HHhcCCceEEEEeC--Chh--HhHHH
Confidence 346777888999999999 3222 00 0 011 22334789999997 588 47778
Q ss_pred HhhhcCCCceEEEcCChHHHHhhcCCceEEcCCCceEEeCcccCCceEEEEEecCccCCCCCCCccEEEEEecCCceeEE
Q 018490 165 PLSKMSPNLKVIATPNAKTLLDPLFQNVTYVEPGQSSEIEGRNGSKLRVKATAGPVLGPPWQRPENGYLVNSSQGQLTLY 244 (355)
Q Consensus 165 ~l~~~~~~~~v~~~~~~~~~l~~~~~~v~~l~~~e~~~l~~~~~~~l~i~~~pa~~~g~~~~~~~~g~~i~~~~~~~~i~ 244 (355)
.+++.+ +++|+++...+..+.- .--..++.|++ -++ ++++.-++++++ + .+..++++. ++.
T Consensus 72 ~ya~~~-~a~i~~p~~d~~~~p~--~~D~~l~dge~-i~~-----g~~vi~l~G~kt-p----GE~ALlled-----~vL 132 (199)
T PF14597_consen 72 DYAEQT-GAKIYGPAADAAQFPL--ACDRWLADGEE-IVP-----GLWVIHLPGSKT-P----GELALLLED-----RVL 132 (199)
T ss_dssp HHHHHS---EEEEEGGGCCC-SS----SEEE-TT-B-SST-----TEEEEEE-SSSS-T----TEEEEEETT-----TEE
T ss_pred HHHHHh-CCeeeccHHHHhhCCC--CCccccccCCC-ccC-----ceEEEEcCCCCC-C----ceeEEEecc-----ceE
Confidence 888887 8999999865532110 11234555652 233 899988888643 1 245666643 589
Q ss_pred EcCCCCCCcccccccCCcEEEEccccccCCCceeccCHHHHHHHHHHc----CCCEEEEecc
Q 018490 245 YEPHCVYNQNFLEKERSDIIITPVIKQLLPKFTLVSGQEDAVKLAKLL----HAKFIVPMKN 302 (355)
Q Consensus 245 ~sGDt~~~~~~~~~~~~Dl~~l~~g~~~~~~~~~h~~~~ea~~~~~~l----~~k~~ip~H~ 302 (355)
++||...+. ..=++.++|--. + +++.++.+.+++| +-+.+++-|-
T Consensus 133 i~GDl~~~~-----~~g~l~lLpd~k-----~---~d~~~a~~sl~RLa~~~~fe~lLvGdG 181 (199)
T PF14597_consen 133 ITGDLLRSH-----PAGSLSLLPDEK-----L---YDPTEARASLRRLAAYPDFEWLLVGDG 181 (199)
T ss_dssp EESSSEEBS-----STTS-EE--GGG---------S-HHHHHHHHHHHHT-TT--EEEESBB
T ss_pred Eecceeeec-----CCCCeEECChHH-----c---CCHHHHHHHHHHHhccccccEEeecCC
Confidence 999954322 134566666521 1 2688888777766 4567777664
No 50
>COG5212 PDE1 Low-affinity cAMP phosphodiesterase [Signal transduction mechanisms]
Probab=95.51 E-value=0.37 Score=44.84 Aligned_cols=191 Identities=13% Similarity=0.007 Sum_probs=102.9
Q ss_pred CCcCEEEecCCCCCCCChhhHH---HhhhcCCCceEEEcCChHHHHhhc-------------C---CceEEcCCCceEEe
Q 018490 143 PQVDCLLITQSLDDHCHLKTLK---PLSKMSPNLKVIATPNAKTLLDPL-------------F---QNVTYVEPGQSSEI 203 (355)
Q Consensus 143 p~iD~VlISH~H~DHld~~tl~---~l~~~~~~~~v~~~~~~~~~l~~~-------------~---~~v~~l~~~e~~~l 203 (355)
..|.--+|||.|.||.. +.+- .+.++. +-++|+-+.+.+.|++. | -+...+++-+..++
T Consensus 111 Q~I~~y~ITH~HLDHIs-GlVinSp~~~~qk-kkTI~gl~~tIDvL~khvFN~lvWP~lt~~gs~~~~~qvv~P~~~~sl 188 (356)
T COG5212 111 QSINSYFITHAHLDHIS-GLVINSPDDSKQK-KKTIYGLADTIDVLRKHVFNWLVWPNLTDSGSGTYRMQVVRPAQSLSL 188 (356)
T ss_pred hhhhheEeccccccchh-ceeecCccccccC-CceEEechhHHHHHHHHhhcccccCCcccccCceEEEEEeChhHeeee
Confidence 36888899999999972 2221 122222 45788888888877764 1 13455666655554
Q ss_pred CcccCCceEEEEEecCccCCCCCC-C-ccEEEEEecCCceeEEEcCCCCCCccccc---------------ccCCcEEEE
Q 018490 204 EGRNGSKLRVKATAGPVLGPPWQR-P-ENGYLVNSSQGQLTLYYEPHCVYNQNFLE---------------KERSDIIIT 266 (355)
Q Consensus 204 ~~~~~~~l~i~~~pa~~~g~~~~~-~-~~g~~i~~~~~~~~i~~sGDt~~~~~~~~---------------~~~~Dl~~l 266 (355)
. -..+++...|..|.- .... . ...|++.....+.-+.+.||+..+..-.+ .....=.++
T Consensus 189 t---~t~l~~~pfpv~Hg~-ktG~p~ySs~~lfr~nkS~~~f~~fGDvepD~vese~ll~~~Wr~~ae~I~q~~Lkgili 264 (356)
T COG5212 189 T---LTRLTGEPFPVSHGK-KTGSPSYSSMLLFRSNKSNEFFAYFGDVEPDDVESEKLLDTVWRKLAEKITQQQLKGILI 264 (356)
T ss_pred e---eeeecceeeeccCCc-ccCCcccceEEEEecCCCcceEEEecCCCcchhhhhHHHHHHHHHHHHhhhHHhhCceEE
Confidence 3 013445555555421 1111 1 23566665432456777799987642111 014555677
Q ss_pred ccccccCCC---ceeccCHHHHHHHHHHc----------CCCEEEEeccCCccccccccccccccCCH----HHHHHHHH
Q 018490 267 PVIKQLLPK---FTLVSGQEDAVKLAKLL----------HAKFIVPMKNGDLDSKGFLASIIQSEGTV----ESFKELLS 329 (355)
Q Consensus 267 ~~g~~~~~~---~~~h~~~~ea~~~~~~l----------~~k~~ip~H~~~f~~~g~l~~~~~~~~~~----~~~~~~~~ 329 (355)
+|.....+. ...||.|.-.+.-+..| +.=-++.+|...-.. ..+.|. ++++-+++
T Consensus 265 EcS~P~~~~~~~LfGH~~P~~L~nEL~~L~~l~~s~~~l~gL~vviTHiKs~p~--------q~~~pr~~ILeeL~fLae 336 (356)
T COG5212 265 ECSYPNDVADNKLFGHMTPTWLLNELKKLEQLSGSGQPLKGLPVVITHIKSSPQ--------QGQDPRKLILEELQFLAE 336 (356)
T ss_pred EecCCCCCChhHhhcccChHHHHHHHHHHHHHhccCCCCCCccEEEEeccCccc--------ccCCHHHHHHHHHHHHHh
Confidence 874322221 12499987665544433 222466678753220 112233 44444444
Q ss_pred hcCC-CCeEeccCCCCeEE
Q 018490 330 KELP-DAQLLEPTPGEPLE 347 (355)
Q Consensus 330 ~~~~-~~~~~~p~~Ge~~~ 347 (355)
+.+. ++++..++.|++..
T Consensus 337 ~~nl~~~~f~i~~~G~~~k 355 (356)
T COG5212 337 QGNLMGIEFIIMEQGDSQK 355 (356)
T ss_pred cCCccceEEEeeecccccc
Confidence 5444 47788888888653
No 51
>KOG4736 consensus Uncharacterized conserved protein [Function unknown]
Probab=93.47 E-value=0.43 Score=44.82 Aligned_cols=89 Identities=13% Similarity=0.111 Sum_probs=54.8
Q ss_pred CcCEEEecCCCCCCCChhhHHHhhhcCCCceEEEcCChHHHHhhcCCc--eEEcCCCceEEeCcccCCceEEEEEecCcc
Q 018490 144 QVDCLLITQSLDDHCHLKTLKPLSKMSPNLKVIATPNAKTLLDPLFQN--VTYVEPGQSSEIEGRNGSKLRVKATAGPVL 221 (355)
Q Consensus 144 ~iD~VlISH~H~DHld~~tl~~l~~~~~~~~v~~~~~~~~~l~~~~~~--v~~l~~~e~~~l~~~~~~~l~i~~~pa~~~ 221 (355)
+||.|++||.|.+|+ +.+..+.. .+++. .-++..+.+ -++++.....+++ .++.+..+|++.-
T Consensus 125 ~i~~vv~t~~~~~hl--gn~~~f~~----sp~l~-----~s~e~~gr~~~pt~l~e~~~~~l~----~~~~V~~TpGht~ 189 (302)
T KOG4736|consen 125 QIDSVVITHKSPGHL--GNNNLFPQ----SPILY-----HSMEYIGRHVTPTELDERPYLKLS----PNVEVWKTPGHTQ 189 (302)
T ss_pred hcceeEEeccCcccc--cccccccC----CHHHh-----hhhhhcCCccChhhhccCCccccC----CceeEeeCCCCCC
Confidence 799999999999996 45444432 22211 123333332 2456667777886 4788988887521
Q ss_pred CCCCCCCccEEEEEecCCceeEEEcCCCCCCc
Q 018490 222 GPPWQRPENGYLVNSSQGQLTLYYEPHCVYNQ 253 (355)
Q Consensus 222 g~~~~~~~~g~~i~~~~~~~~i~~sGDt~~~~ 253 (355)
...+.++...+...+++++||.....
T Consensus 190 ------~~isvlv~n~~~~GTv~itGDLf~~~ 215 (302)
T KOG4736|consen 190 ------HDISVLVHNVDLYGTVAITGDLFPRE 215 (302)
T ss_pred ------cceEEEEEeecccceEEEEeecccCC
Confidence 12345555443356999999976543
No 52
>COG2015 Alkyl sulfatase and related hydrolases [Secondary metabolites biosynthesis, transport, and catabolism]
Probab=83.16 E-value=0.72 Score=46.22 Aligned_cols=35 Identities=26% Similarity=0.337 Sum_probs=26.0
Q ss_pred CcCEEEecCCCCCCCChhhHHHhhhc----CCCceEEEcCC
Q 018490 144 QVDCLLITQSLDDHCHLKTLKPLSKM----SPNLKVIATPN 180 (355)
Q Consensus 144 ~iD~VlISH~H~DHld~~tl~~l~~~----~~~~~v~~~~~ 180 (355)
+|-+|+-||.|.||+ ++++.+.+. ..+++|+++..
T Consensus 164 PV~aVIYtHsH~DHf--GGVkGiv~eadV~sGkV~iiAP~G 202 (655)
T COG2015 164 PVVAVIYTHSHSDHF--GGVKGIVSEADVKSGKVQIIAPAG 202 (655)
T ss_pred CeEEEEeeccccccc--CCeeeccCHHHcccCceeEecchh
Confidence 688999999999995 677665431 13678887765
No 53
>TIGR00649 MG423 conserved hypothetical protein. Contains an ATP-binding domain at the N-terminal end of the protein. Possibly part of a superfamily of beta-lactmases
Probab=82.91 E-value=2.6 Score=42.11 Aligned_cols=61 Identities=25% Similarity=0.352 Sum_probs=45.4
Q ss_pred ceeccCHHHHHHHHHHcCCCEEEEeccCCccccccccccccccCCHHHHHHHHHhcCC-CCeEeccCCCCeEEcCC
Q 018490 276 FTLVSGQEDAVKLAKLLHAKFIVPMKNGDLDSKGFLASIIQSEGTVESFKELLSKELP-DAQLLEPTPGEPLEIPA 350 (355)
Q Consensus 276 ~~~h~~~~ea~~~~~~l~~k~~ip~H~~~f~~~g~l~~~~~~~~~~~~~~~~~~~~~~-~~~~~~p~~Ge~~~l~~ 350 (355)
+..|-+.+|..++++.++||++||+|-. +. | ...+.+.+++.|. ..+++.|+-|+.+.+..
T Consensus 358 ~SgHa~~~dl~~~i~~~~Pk~~ipvHge-~~-------~------~~~~~~~a~~~g~~~~~~~~~~nG~~~~~~~ 419 (422)
T TIGR00649 358 VSGHASQEDHKLLLRLLKPKYIIPVHGE-YR-------M------LINHTKLAEEEGYPGENIFILRNGDVLEING 419 (422)
T ss_pred ecCCCCHHHHHHHHHHhCCCEEEecCCc-HH-------H------HHHHHHHHHHcCCCcccEEEecCCcEEEecC
Confidence 4468899999999999999999999954 22 2 3344555555443 24688889999999865
No 54
>PF07521 RMMBL: RNA-metabolising metallo-beta-lactamase; InterPro: IPR011108 The metallo-beta-lactamase fold contains five sequence motifs. The first four motifs are found in IPR001279 from INTERPRO and are common to all metallo-beta-lactamases. The fifth motif appears to be specific to function. This entry represents the fifth motif from metallo-beta-lactamases involved in RNA metabolism [].; PDB: 3ZQ4_D 2I7T_A 2I7V_A 2YCB_B 3BK1_A 3T3N_A 3BK2_A 3T3O_A 3AF5_A 3AF6_A ....
Probab=79.17 E-value=2.5 Score=27.88 Aligned_cols=27 Identities=11% Similarity=0.311 Sum_probs=23.4
Q ss_pred ceeccCHHHHHHHHHHcCCCEEEEecc
Q 018490 276 FTLVSGQEDAVKLAKLLHAKFIVPMKN 302 (355)
Q Consensus 276 ~~~h~~~~ea~~~~~~l~~k~~ip~H~ 302 (355)
+..|.+.++..++++.++|+.++++|-
T Consensus 14 fSgHad~~~L~~~i~~~~p~~vilVHG 40 (43)
T PF07521_consen 14 FSGHADREELLEFIEQLNPRKVILVHG 40 (43)
T ss_dssp CSSS-BHHHHHHHHHHHCSSEEEEESS
T ss_pred ecCCCCHHHHHHHHHhcCCCEEEEecC
Confidence 345889999999999999999999995
No 55
>COG0595 mRNA degradation ribonucleases J1/J2 (metallo-beta-lactamase superfamily) [Translation, ribosomal structure and biogenesis; Replication, recombination and repair]
Probab=72.40 E-value=5.6 Score=41.20 Aligned_cols=60 Identities=18% Similarity=0.325 Sum_probs=43.2
Q ss_pred eccCHHHHHHHHHHcCCCEEEEeccCCccccccccccccccCCHHHHHHHHHhcCC-CCeEeccCCCCeEEcCCC
Q 018490 278 LVSGQEDAVKLAKLLHAKFIVPMKNGDLDSKGFLASIIQSEGTVESFKELLSKELP-DAQLLEPTPGEPLEIPAP 351 (355)
Q Consensus 278 ~h~~~~ea~~~~~~l~~k~~ip~H~~~f~~~g~l~~~~~~~~~~~~~~~~~~~~~~-~~~~~~p~~Ge~~~l~~~ 351 (355)
.|-+.+|...+++.++|+++||+|- .+.. +. ..++.+.+.|. ...++.++.|+.+.+...
T Consensus 370 GHas~eel~~mi~~l~Pky~iPvHG-eyr~---~~----------~~a~la~~~G~~~~~i~i~~nG~v~~l~~~ 430 (555)
T COG0595 370 GHASREELKLMINLLRPKYLIPVHG-EYRM---LV----------AHAKLAEEEGIPQENIFILRNGDVLELEGG 430 (555)
T ss_pred CCCChHHHHHHHHhhCCceecccCC-CcHH---HH----------HHHHHHHhcCCCcccEEEecCceEEEecCC
Confidence 4889999999999999999999995 4431 22 22444444432 235777889999998754
No 56
>TIGR03675 arCOG00543 arCOG00543 universal archaeal KH-domain/beta-lactamase-domain protein. This family of proteins is universal in the archaea and consistsof an N-terminal type-1 KH-domain (pfam00013) a central beta-lactamase-domain (pfam00753) with a C-terminal motif associated with RNA metabolism (pfam07521). KH-domains are associated with RNA-binding, so taken together, this protein is a likely metal-dependent RNAase. This family was defined in as arCOG01782.
Probab=60.96 E-value=18 Score=38.31 Aligned_cols=59 Identities=10% Similarity=0.156 Sum_probs=45.6
Q ss_pred CceeccCHHHHHHHHHHcCC--CEEEEeccCCccccccccccccccCCHHHHHHHHHhcCCCCeEeccCCCCeEEc
Q 018490 275 KFTLVSGQEDAVKLAKLLHA--KFIVPMKNGDLDSKGFLASIIQSEGTVESFKELLSKELPDAQLLEPTPGEPLEI 348 (355)
Q Consensus 275 ~~~~h~~~~ea~~~~~~l~~--k~~ip~H~~~f~~~g~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~Ge~~~l 348 (355)
+|..|.+..|.++.++.+++ +.++.+|-.. +..+.|++.+.+. .++++..|+.||++.+
T Consensus 569 gfSaHaD~~~L~~~v~~~~p~p~~v~lvHGe~--------------~~~~~la~~l~~~-~~~~~~~P~~~e~~~~ 629 (630)
T TIGR03675 569 GFSGHSDRRQLMNYVRRMQPKPEKILLNHGEP--------------SKILDLASSIYKK-FNIETYAPKNLETIRL 629 (630)
T ss_pred CccccCCHHHHHHHHHhcCCCCCEEEEEcCCH--------------HHHHHHHHHHHHH-hCCcEEeCCCCCEEEe
Confidence 45669999999999999965 8999999652 2355666666553 3578888999999986
No 57
>KOG3592 consensus Microtubule-associated proteins [Cytoskeleton]
Probab=55.09 E-value=6.2 Score=41.54 Aligned_cols=47 Identities=23% Similarity=0.439 Sum_probs=32.8
Q ss_pred cEEEEEeCCeEEEEccccCCCCCCCcccccccCccccchhhhhhhccccCCCCCCCCCcCEEEecCCCCCCC
Q 018490 87 NSWLWDLDGVKVLVDPILVGNLDFGIPWLFDAGKKFLKSFQIVLIGMKTLVQLSDLPQVDCLLITQSLDDHC 158 (355)
Q Consensus 87 ss~li~~~g~~iLiDP~~sg~~~~p~~~~~~g~~~r~~~~~~~~~g~~~~~~~~~lp~iD~VlISH~H~DHl 158 (355)
.+-|+-++|.+||++-.- .+-+ ++ |- | +..|.+||+||+||--.|.|
T Consensus 49 daALFavnGf~iLv~Ggs-erKS-~f-wk----------l------------VrHldrVdaVLLthpg~dNL 95 (934)
T KOG3592|consen 49 DAALFAVNGFNILVNGGS-ERKS-CF-WK----------L------------VRHLDRVDAVLLTHPGADNL 95 (934)
T ss_pred cceeEeecceEEeecCCc-cccc-ch-HH----------H------------HHHHhhhhhhhhcccccCcc
Confidence 366888999999999733 2222 11 21 0 23455899999999999997
No 58
>PF13691 Lactamase_B_4: tRNase Z endonuclease
Probab=54.21 E-value=34 Score=24.66 Aligned_cols=48 Identities=17% Similarity=0.182 Sum_probs=32.8
Q ss_pred CcEEEEEeCCeEEEE-ccccCCCCCCCcccccccCccccchhhhhhhccccCCCCCCCCCcCEEEecCCC-CCCC
Q 018490 86 GNSWLWDLDGVKVLV-DPILVGNLDFGIPWLFDAGKKFLKSFQIVLIGMKTLVQLSDLPQVDCLLITQSL-DDHC 158 (355)
Q Consensus 86 hss~li~~~g~~iLi-DP~~sg~~~~p~~~~~~g~~~r~~~~~~~~~g~~~~~~~~~lp~iD~VlISH~H-~DHl 158 (355)
+.|++|.++..+.|+ +. +... +.+ +.. ..+ .+.++..|++|+.. +|++
T Consensus 12 ~p~l~l~~d~~rYlFGn~---gEGt---QR~-------~~e---------~~i---kl~kl~~IFlT~~~~w~~~ 61 (63)
T PF13691_consen 12 GPSLLLFFDSRRYLFGNC---GEGT---QRA-------CNE---------HKI---KLSKLNDIFLTGLSSWENI 61 (63)
T ss_pred CCEEEEEeCCceEEeccC---CcHH---HHH-------HHH---------cCC---CccccceEEECCCCccccc
Confidence 378999999999999 88 5332 111 111 112 23589999999999 8874
No 59
>KOG3798 consensus Predicted Zn-dependent hydrolase (beta-lactamase superfamily) [General function prediction only]
Probab=50.48 E-value=6.7 Score=36.35 Aligned_cols=63 Identities=8% Similarity=-0.139 Sum_probs=44.4
Q ss_pred EEEeCCeEEEEccccCCCCCCCcccccccCccccchhhhhhhccccCCCCCCCCCcCEEEecCCCCCCCChhhHHHh
Q 018490 90 LWDLDGVKVLVDPILVGNLDFGIPWLFDAGKKFLKSFQIVLIGMKTLVQLSDLPQVDCLLITQSLDDHCHLKTLKPL 166 (355)
Q Consensus 90 li~~~g~~iLiDP~~sg~~~~p~~~~~~g~~~r~~~~~~~~~g~~~~~~~~~lp~iD~VlISH~H~DHld~~tl~~l 166 (355)
+..+.+-..+.||.++.. + |..+. ++++.++ .+.+++.++.++.++++|+|+||.++.++...
T Consensus 98 ~~~~tdpvf~d~~if~s~-g-Pkry~--~pp~~~~----------~~p~~d~~~vsh~h~dhld~~~~~~~~~~~~~ 160 (343)
T KOG3798|consen 98 VKFVTDPVWADRASFTSF-G-PKRYR--PPPMKLE----------DLPDLDFAVVSHDHYDHLDADAVKKITDRNPQ 160 (343)
T ss_pred cEEecchhhccchhhccc-C-ccccc--CCchhhc----------cCCCCceeccccccccccchHHHHhhhccCcc
Confidence 345677888999999854 4 54444 4544333 33457777899999999999999987766543
No 60
>COG4090 Uncharacterized protein conserved in archaea [Function unknown]
Probab=47.51 E-value=24 Score=29.28 Aligned_cols=69 Identities=16% Similarity=0.296 Sum_probs=46.3
Q ss_pred EEEEEecCCceeEEEcCCCCCCcc----ccc----------ccCCcEEEEccccccCCCceeccCHHHHHHHHHHcCCCE
Q 018490 231 GYLVNSSQGQLTLYYEPHCVYNQN----FLE----------KERSDIIITPVIKQLLPKFTLVSGQEDAVKLAKLLHAKF 296 (355)
Q Consensus 231 g~~i~~~~~~~~i~~sGDt~~~~~----~~~----------~~~~Dl~~l~~g~~~~~~~~~h~~~~ea~~~~~~l~~k~ 296 (355)
+|.+.+ +..||+.|+.+... +.+ ....|++++=- +..+|.+.. ++++|.++.+.+.++.
T Consensus 46 ~favRD----ke~~fipd~d~ek~rkl~~~d~G~ql~e~e~~n~aDvvVLlG-GLaMP~~gv--~~d~~kel~ee~~~kk 118 (154)
T COG4090 46 AFAVRD----KEQYFIPDLDFEKARKLELTDHGYQLGEREELNSADVVVLLG-GLAMPKIGV--TPDDAKELLEELGNKK 118 (154)
T ss_pred HHHhhc----hheeecCCcChhHhheeeeeccceecCCccccccccEEEEEc-ccccCcCCC--CHHHHHHHHHhcCCCc
Confidence 666764 36777777654321 111 11589887754 556776555 8999999999999998
Q ss_pred EEEecc-CCcc
Q 018490 297 IVPMKN-GDLD 306 (355)
Q Consensus 297 ~ip~H~-~~f~ 306 (355)
+|.+.+ .+|.
T Consensus 119 liGvCfm~mF~ 129 (154)
T COG4090 119 LIGVCFMNMFE 129 (154)
T ss_pred eEEeeHHHHHH
Confidence 777655 4565
No 61
>PRK05096 guanosine 5'-monophosphate oxidoreductase; Provisional
Probab=42.05 E-value=30 Score=33.59 Aligned_cols=48 Identities=15% Similarity=0.175 Sum_probs=36.1
Q ss_pred CCcCEEEe--cCCCCCCCChhhHHHhhhcCCCceEEE----cCChHHHHhhcCCc
Q 018490 143 PQVDCLLI--TQSLDDHCHLKTLKPLSKMSPNLKVIA----TPNAKTLLDPLFQN 191 (355)
Q Consensus 143 p~iD~VlI--SH~H~DHld~~tl~~l~~~~~~~~v~~----~~~~~~~l~~~~~~ 191 (355)
+.+|+|+| +|.|.++. ...++.+++.+|++.+++ +++++..|..+|..
T Consensus 121 ~g~D~iviD~AhGhs~~~-i~~ik~ik~~~P~~~vIaGNV~T~e~a~~Li~aGAD 174 (346)
T PRK05096 121 PALNFICIDVANGYSEHF-VQFVAKAREAWPDKTICAGNVVTGEMVEELILSGAD 174 (346)
T ss_pred CCCCEEEEECCCCcHHHH-HHHHHHHHHhCCCCcEEEecccCHHHHHHHHHcCCC
Confidence 36788775 89999997 788999999888888765 34455666666643
No 62
>KOG1136 consensus Predicted cleavage and polyadenylation specificity factor (CPSF subunit) [RNA processing and modification]
Probab=40.81 E-value=74 Score=30.88 Aligned_cols=61 Identities=20% Similarity=0.284 Sum_probs=46.7
Q ss_pred ceeccCHHHHHHHHHHcCCCEEEEeccCCccccccccccccccCCHHHHHHHHHhcCCCCeEeccCCCCeEEcCCC
Q 018490 276 FTLVSGQEDAVKLAKLLHAKFIVPMKNGDLDSKGFLASIIQSEGTVESFKELLSKELPDAQLLEPTPGEPLEIPAP 351 (355)
Q Consensus 276 ~~~h~~~~ea~~~~~~l~~k~~ip~H~~~f~~~g~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~Ge~~~l~~~ 351 (355)
|..|.+.....++.+...||.++.+|-..-. .+-+++.+++. .++....|.-||++.+...
T Consensus 388 FSaHaDAkGIm~li~~csPknVmlVHGE~~k--------------M~~Lk~ki~~e-~~ip~~mPaNGetv~i~s~ 448 (501)
T KOG1136|consen 388 FSAHADAKGIMQLIKQCSPKNVMLVHGEKSK--------------MKFLKEKIESE-FDIPTFMPANGETVVISST 448 (501)
T ss_pred eccccCchhHHHHHHhcCcceEEEEeccchh--------------hHHHHHhhHhh-cCCceeeCCCCCEEEeccc
Confidence 3448899999999999999999999975422 23345555554 5788888999999998765
No 63
>PF00478 IMPDH: IMP dehydrogenase / GMP reductase domain; InterPro: IPR001093 Synonym(s): Inosine-5'-monophosphate dehydrogenase, Inosinic acid dehydrogenase; Synonym(s): Guanosine 5'-monophosphate oxidoreductase This entry contains two related enzymes IMP dehydrogenase and GMP reducatase. These enzymes adopt a TIM barrel structure. IMP dehydrogenase (1.1.1.205 from EC) (IMPDH) catalyzes the rate-limiting reaction of de novo GTP biosynthesis, the NAD-dependent reduction of IMP into XMP []. Inosine 5-phosphate + NAD+ + H2O = xanthosine 5-phosphate + NADH IMP dehydrogenase is associated with cell proliferation and is a possible target for cancer chemotherapy. Mammalian and bacterial IMPDHs are tetramers of identical chains. There are two IMP dehydrogenase isozymes in humans []. IMP dehydrogenase nearly always contains a long insertion that has two CBS domains within it. GMP reductase (1.7.1.7 from EC) catalyzes the irreversible and NADPH-dependent reductive deamination of GMP into IMP []. NADPH + guanosine 5-phosphate = NADP+ + inosine 5-phosphate + NH3 It converts nucleobase, nucleoside and nucleotide derivatives of G to A nucleotides, and maintains intracellular balance of A and G nucleotides.; GO: 0003824 catalytic activity, 0055114 oxidation-reduction process; PDB: 3FFS_D 1VRD_A 1JCN_B 1EEP_B 3TSB_B 3USB_B 3TSD_A 4FF0_A 4FEZ_A 3KHJ_D ....
Probab=37.39 E-value=32 Score=33.61 Aligned_cols=46 Identities=24% Similarity=0.304 Sum_probs=35.2
Q ss_pred CcCEEEe--cCCCCCCCChhhHHHhhhcCCCceEEEc----CChHHHHhhcCC
Q 018490 144 QVDCLLI--TQSLDDHCHLKTLKPLSKMSPNLKVIAT----PNAKTLLDPLFQ 190 (355)
Q Consensus 144 ~iD~VlI--SH~H~DHld~~tl~~l~~~~~~~~v~~~----~~~~~~l~~~~~ 190 (355)
.+|+|+| +|.|..|. ...++.+++.+|+++|++. .+++..|..+|.
T Consensus 120 gvD~ivID~a~g~s~~~-~~~ik~ik~~~~~~~viaGNV~T~e~a~~L~~aGa 171 (352)
T PF00478_consen 120 GVDVIVIDSAHGHSEHV-IDMIKKIKKKFPDVPVIAGNVVTYEGAKDLIDAGA 171 (352)
T ss_dssp T-SEEEEE-SSTTSHHH-HHHHHHHHHHSTTSEEEEEEE-SHHHHHHHHHTT-
T ss_pred CCCEEEccccCccHHHH-HHHHHHHHHhCCCceEEecccCCHHHHHHHHHcCC
Confidence 6788888 89999998 7889999999988888754 455666766653
No 64
>PF07522 DRMBL: DNA repair metallo-beta-lactamase; InterPro: IPR011084 The metallo-beta-lactamase fold contains five sequence motifs. The first four motifs are found in IPR001279 from INTERPRO and are common to all metallo-beta-lactamases. The fifth motif appears to be specific to function. This entry represents the fifth motif from metallo-beta-lactamases involved in DNA repair [].
Probab=36.77 E-value=36 Score=27.04 Aligned_cols=25 Identities=20% Similarity=0.349 Sum_probs=22.7
Q ss_pred ceeccCHHHHHHHHHHcCCCEEEEe
Q 018490 276 FTLVSGQEDAVKLAKLLHAKFIVPM 300 (355)
Q Consensus 276 ~~~h~~~~ea~~~~~~l~~k~~ip~ 300 (355)
|..|.+..|..++++.++|+.++|+
T Consensus 81 YSeHSSf~EL~~Fv~~l~P~~IiPt 105 (110)
T PF07522_consen 81 YSEHSSFSELKEFVSFLKPKKIIPT 105 (110)
T ss_pred cccCCCHHHHHHHHHhcCCcEEEcc
Confidence 3459999999999999999999996
No 65
>TIGR01305 GMP_reduct_1 guanosine monophosphate reductase, eukaryotic. A deep split separates two families of GMP reductase. This family includes both eukaryotic and some proteobacterial sequences, while the other family contains other bacterial sequences.
Probab=32.68 E-value=53 Score=31.89 Aligned_cols=48 Identities=15% Similarity=0.203 Sum_probs=35.2
Q ss_pred CCcCEEEe--cCCCCCCCChhhHHHhhhcCCCceEEEc----CChHHHHhhcCCc
Q 018490 143 PQVDCLLI--TQSLDDHCHLKTLKPLSKMSPNLKVIAT----PNAKTLLDPLFQN 191 (355)
Q Consensus 143 p~iD~VlI--SH~H~DHld~~tl~~l~~~~~~~~v~~~----~~~~~~l~~~~~~ 191 (355)
+.+|+|+| +|.|.++. .+.++++.+.+|+..++.. ++.+..|..+|..
T Consensus 120 ~~~d~iviD~AhGhs~~~-i~~ik~ir~~~p~~~viaGNV~T~e~a~~Li~aGAD 173 (343)
T TIGR01305 120 PQLKFICLDVANGYSEHF-VEFVKLVREAFPEHTIMAGNVVTGEMVEELILSGAD 173 (343)
T ss_pred CCCCEEEEECCCCcHHHH-HHHHHHHHhhCCCCeEEEecccCHHHHHHHHHcCCC
Confidence 46788775 89999998 8889999988887776554 4555566666643
No 66
>KOG1137 consensus mRNA cleavage and polyadenylation factor II complex, BRR5 (CPSF subunit) [RNA processing and modification]
Probab=30.00 E-value=1.1e+02 Score=31.70 Aligned_cols=63 Identities=11% Similarity=0.111 Sum_probs=45.8
Q ss_pred ceeccCHHHHHHHHHHcCCCEEEEeccCCccccccccccccccCCHHHHHHHHHh----cCCCCeEeccCCCCeEEcCCC
Q 018490 276 FTLVSGQEDAVKLAKLLHAKFIVPMKNGDLDSKGFLASIIQSEGTVESFKELLSK----ELPDAQLLEPTPGEPLEIPAP 351 (355)
Q Consensus 276 ~~~h~~~~ea~~~~~~l~~k~~ip~H~~~f~~~g~l~~~~~~~~~~~~~~~~~~~----~~~~~~~~~p~~Ge~~~l~~~ 351 (355)
|..|.+..|..+++++++|+.+|.+|-..- +..+++.++++ ....+.+.+|+-+|.+++.-+
T Consensus 395 FaAhvdy~q~s~fi~~i~~~~lilVHGE~n--------------eM~rLKs~L~~~f~d~kv~i~v~tprn~e~v~l~f~ 460 (668)
T KOG1137|consen 395 FAAHVDYLQNSEFIADITPPHLILVHGEAN--------------EMMRLKSALEAAFRDGKVPIDVSTPRNCEDVELYFP 460 (668)
T ss_pred eeechhhhhhHHHHHHhCCCeEEEEecccc--------------hhHHHHHHHHHHhccCCCcceecCCccceEeeeecC
Confidence 344889999999999999999999996532 23344444443 223688999999999988654
Q ss_pred C
Q 018490 352 S 352 (355)
Q Consensus 352 ~ 352 (355)
.
T Consensus 461 ~ 461 (668)
T KOG1137|consen 461 G 461 (668)
T ss_pred c
Confidence 3
Done!