Query 018493
Match_columns 355
No_of_seqs 265 out of 1066
Neff 4.8
Searched_HMMs 46136
Date Fri Mar 29 09:28:38 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/018493.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/018493hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 KOG4361 BCL2-associated athano 99.8 1.7E-20 3.7E-25 184.9 3.1 212 27-238 31-257 (344)
2 cd01813 UBP_N UBP ubiquitin pr 99.8 1.8E-18 3.8E-23 136.1 7.9 71 56-126 1-74 (74)
3 cd01812 BAG1_N Ubiquitin-like 99.7 3.4E-17 7.5E-22 125.0 8.0 71 56-126 1-71 (71)
4 cd01807 GDX_N ubiquitin-like d 99.6 1E-15 2.3E-20 119.1 7.5 71 57-127 2-73 (74)
5 cd01791 Ubl5 UBL5 ubiquitin-li 99.6 1.8E-15 3.9E-20 119.1 7.5 70 55-124 1-71 (73)
6 cd01793 Fubi Fubi ubiquitin-li 99.6 5.1E-15 1.1E-19 115.4 7.0 69 56-125 1-69 (74)
7 PF02179 BAG: BAG domain; Int 99.6 6.2E-15 1.4E-19 116.4 7.5 72 150-227 2-76 (76)
8 cd01809 Scythe_N Ubiquitin-lik 99.6 6.8E-15 1.5E-19 112.2 7.3 70 56-125 1-71 (72)
9 cd01804 midnolin_N Ubiquitin-l 99.6 1.1E-14 2.3E-19 115.3 7.7 70 56-126 2-72 (78)
10 cd01805 RAD23_N Ubiquitin-like 99.5 1.4E-14 3.1E-19 112.5 7.8 70 57-126 2-74 (77)
11 cd01798 parkin_N amino-termina 99.5 1.4E-14 3E-19 111.5 6.5 67 59-125 2-69 (70)
12 PF00240 ubiquitin: Ubiquitin 99.5 1.8E-14 4E-19 109.5 6.7 65 63-127 4-68 (69)
13 cd01794 DC_UbP_C dendritic cel 99.5 1.8E-14 3.8E-19 112.3 6.3 63 63-125 7-69 (70)
14 cd01796 DDI1_N DNA damage indu 99.5 2.1E-14 4.6E-19 111.6 6.5 67 57-123 2-69 (71)
15 cd01797 NIRF_N amino-terminal 99.5 2.5E-14 5.3E-19 113.7 7.1 71 57-127 2-75 (78)
16 smart00264 BAG BAG domains, pr 99.5 5.5E-14 1.2E-18 112.4 8.5 54 174-227 24-79 (79)
17 cd01808 hPLIC_N Ubiquitin-like 99.5 3.5E-14 7.7E-19 109.7 6.6 70 56-125 1-70 (71)
18 cd01810 ISG15_repeat2 ISG15 ub 99.5 4.8E-14 1.1E-18 109.9 6.4 67 59-125 2-69 (74)
19 PTZ00044 ubiquitin; Provisiona 99.5 7.4E-14 1.6E-18 108.4 7.1 70 57-126 2-72 (76)
20 cd01806 Nedd8 Nebb8-like ubiq 99.5 1.1E-13 2.3E-18 106.7 7.8 70 56-125 1-71 (76)
21 cd01792 ISG15_repeat1 ISG15 ub 99.5 1E-13 2.3E-18 109.8 7.5 72 56-127 3-77 (80)
22 cd01800 SF3a120_C Ubiquitin-li 99.5 6.5E-14 1.4E-18 109.9 6.1 66 61-126 4-69 (76)
23 cd01803 Ubiquitin Ubiquitin. U 99.5 1.1E-13 2.3E-18 106.6 7.2 71 56-126 1-72 (76)
24 cd01802 AN1_N ubiquitin-like d 99.5 1.2E-13 2.6E-18 115.4 7.9 72 54-125 26-98 (103)
25 cd01790 Herp_N Homocysteine-re 99.4 3.7E-13 7.9E-18 108.1 7.1 70 56-125 2-78 (79)
26 smart00213 UBQ Ubiquitin homol 99.4 3.6E-13 7.8E-18 99.5 6.2 64 56-119 1-64 (64)
27 cd01815 BMSC_UbP_N Ubiquitin-l 99.3 1E-12 2.2E-17 104.7 5.0 54 72-125 18-74 (75)
28 KOG0010 Ubiquitin-like protein 99.3 2.6E-12 5.6E-17 131.2 7.0 73 54-126 14-86 (493)
29 TIGR00601 rad23 UV excision re 99.3 6.3E-12 1.4E-16 126.2 7.7 71 56-126 1-75 (378)
30 cd01769 UBL Ubiquitin-like dom 99.3 1.2E-11 2.6E-16 92.4 6.7 66 60-125 2-68 (69)
31 cd01799 Hoil1_N Ubiquitin-like 99.2 2E-11 4.3E-16 96.6 6.6 61 63-124 11-73 (75)
32 cd01763 Sumo Small ubiquitin-r 99.1 2E-10 4.3E-15 92.7 8.5 74 52-125 8-82 (87)
33 KOG0005 Ubiquitin-like protein 99.1 1.5E-10 3.2E-15 88.7 4.8 68 57-124 2-70 (70)
34 cd01789 Alp11_N Ubiquitin-like 99.1 5.2E-10 1.1E-14 90.0 7.6 70 56-125 2-80 (84)
35 KOG1872 Ubiquitin-specific pro 99.0 3.3E-10 7.2E-15 115.4 6.5 75 54-128 2-77 (473)
36 PF14560 Ubiquitin_2: Ubiquiti 99.0 6.5E-10 1.4E-14 89.3 6.3 72 55-126 1-83 (87)
37 cd01814 NTGP5 Ubiquitin-like N 99.0 2.8E-10 6.1E-15 96.9 4.3 78 56-133 7-97 (113)
38 cd01795 USP48_C USP ubiquitin- 99.0 6.3E-10 1.4E-14 93.1 5.9 60 67-126 17-77 (107)
39 PF11976 Rad60-SLD: Ubiquitin- 98.9 3.3E-09 7.2E-14 81.5 6.9 69 56-124 1-71 (72)
40 KOG0011 Nucleotide excision re 98.8 4.8E-09 1E-13 103.1 6.6 72 56-127 1-75 (340)
41 KOG0003 Ubiquitin/60s ribosoma 98.8 2.2E-09 4.8E-14 90.9 2.0 66 59-124 5-70 (128)
42 KOG0004 Ubiquitin/40S ribosoma 98.8 5.9E-09 1.3E-13 93.0 3.8 67 58-124 3-70 (156)
43 cd01801 Tsc13_N Ubiquitin-like 98.5 2.5E-07 5.5E-12 72.9 5.7 52 72-123 20-74 (77)
44 KOG4248 Ubiquitin-like protein 98.4 2.5E-07 5.5E-12 101.5 5.7 72 56-128 3-75 (1143)
45 PLN02560 enoyl-CoA reductase 98.4 6E-07 1.3E-11 88.3 7.1 57 68-124 17-81 (308)
46 PF13881 Rad60-SLD_2: Ubiquiti 98.4 1.2E-06 2.7E-11 74.5 7.6 73 56-128 3-90 (111)
47 cd00196 UBQ Ubiquitin-like pro 98.4 1.2E-06 2.6E-11 60.4 5.9 63 63-125 6-68 (69)
48 KOG0001 Ubiquitin and ubiquiti 98.3 3.9E-06 8.4E-11 61.6 7.7 65 62-126 7-71 (75)
49 cd01788 ElonginB Ubiquitin-lik 98.3 2.4E-06 5.3E-11 73.2 7.1 70 56-125 3-79 (119)
50 PF11543 UN_NPL4: Nuclear pore 98.2 3.7E-06 7.9E-11 67.6 6.1 70 55-124 4-78 (80)
51 PF08817 YukD: WXG100 protein 97.7 8.6E-05 1.9E-09 58.8 5.5 69 55-123 2-78 (79)
52 PF11470 TUG-UBL1: GLUT4 regul 97.3 0.0006 1.3E-08 53.1 5.3 64 60-123 2-65 (65)
53 KOG0006 E3 ubiquitin-protein l 97.1 0.00056 1.2E-08 68.0 4.6 59 66-124 15-73 (446)
54 cd01811 OASL_repeat1 2'-5' oli 96.7 0.0055 1.2E-07 49.3 6.5 70 56-126 1-76 (80)
55 PF10302 DUF2407: DUF2407 ubiq 96.7 0.0025 5.4E-08 53.2 4.7 62 56-117 3-68 (97)
56 KOG4495 RNA polymerase II tran 96.7 0.0026 5.6E-08 53.5 4.8 61 56-116 3-65 (110)
57 KOG3206 Alpha-tubulin folding 96.5 0.0046 1E-07 58.3 5.4 74 55-128 1-83 (234)
58 KOG1769 Ubiquitin-like protein 96.4 0.016 3.5E-07 48.8 7.5 73 53-125 18-91 (99)
59 KOG3493 Ubiquitin-like protein 96.3 0.0018 4E-08 50.8 1.4 60 64-123 11-70 (73)
60 COG5417 Uncharacterized small 96.2 0.012 2.6E-07 47.5 5.7 68 57-124 8-81 (81)
61 PF00789 UBX: UBX domain; Int 95.9 0.035 7.6E-07 43.6 7.1 71 53-123 4-80 (82)
62 smart00166 UBX Domain present 95.9 0.065 1.4E-06 42.3 8.5 70 54-123 3-78 (80)
63 cd01767 UBX UBX (ubiquitin reg 95.5 0.12 2.7E-06 40.3 8.6 68 55-124 2-75 (77)
64 KOG4361 BCL2-associated athano 95.5 0.0073 1.6E-07 60.7 1.9 51 162-214 292-344 (344)
65 smart00666 PB1 PB1 domain. Pho 95.4 0.05 1.1E-06 42.4 6.1 47 55-101 1-47 (81)
66 PF15044 CLU_N: Mitochondrial 95.0 0.081 1.8E-06 42.2 6.4 59 71-129 1-61 (76)
67 KOG0013 Uncharacterized conser 94.3 0.033 7.1E-07 52.8 2.9 69 56-124 148-216 (231)
68 PF00564 PB1: PB1 domain; Int 94.2 0.11 2.4E-06 40.5 5.3 47 55-101 1-48 (84)
69 cd01770 p47_UBX p47-like ubiqu 93.7 0.45 9.7E-06 38.1 7.9 68 54-121 3-75 (79)
70 cd01772 SAKS1_UBX SAKS1-like U 93.1 0.74 1.6E-05 36.5 8.3 68 55-123 4-77 (79)
71 cd01773 Faf1_like1_UBX Faf1 ik 93.1 0.84 1.8E-05 37.2 8.7 71 53-124 3-79 (82)
72 KOG4583 Membrane-associated ER 92.8 0.081 1.7E-06 53.3 2.9 63 53-115 7-74 (391)
73 cd06406 PB1_P67 A PB1 domain i 92.7 0.3 6.5E-06 39.8 5.6 47 56-103 3-49 (80)
74 cd05992 PB1 The PB1 domain is 92.4 0.27 5.8E-06 38.1 4.9 46 56-101 1-47 (81)
75 cd06407 PB1_NLP A PB1 domain i 92.4 0.34 7.4E-06 39.2 5.5 46 56-101 1-47 (82)
76 PRK06437 hypothetical protein; 92.1 0.6 1.3E-05 36.1 6.5 60 54-125 3-62 (67)
77 cd01771 Faf1_UBX Faf1 UBX doma 91.8 1.5 3.2E-05 35.2 8.5 69 54-123 3-77 (80)
78 KOG2982 Uncharacterized conser 91.3 0.29 6.3E-06 49.4 4.8 72 54-125 337-416 (418)
79 cd01774 Faf1_like2_UBX Faf1 ik 91.1 1.7 3.7E-05 35.3 8.3 69 54-123 3-82 (85)
80 COG5227 SMT3 Ubiquitin-like pr 90.9 0.54 1.2E-05 39.4 5.2 71 53-123 22-93 (103)
81 KOG4250 TANK binding protein k 89.7 6.2 0.00013 43.5 13.4 68 55-124 315-384 (732)
82 cd06408 PB1_NoxR The PB1 domai 89.0 1.2 2.5E-05 36.8 5.7 45 55-100 2-46 (86)
83 PF13019 Telomere_Sde2: Telome 88.8 1.7 3.7E-05 39.7 7.3 64 56-119 1-73 (162)
84 KOG1639 Steroid reductase requ 88.6 0.93 2E-05 44.3 5.7 56 69-124 17-77 (297)
85 PRK08364 sulfur carrier protei 88.0 3.1 6.6E-05 32.3 7.3 62 55-125 4-65 (70)
86 cd06398 PB1_Joka2 The PB1 doma 87.2 2 4.3E-05 35.5 6.1 46 56-101 1-52 (91)
87 cd06396 PB1_NBR1 The PB1 domai 86.7 1.5 3.2E-05 35.8 5.0 36 56-91 1-38 (81)
88 PLN02799 Molybdopterin synthas 83.7 4.1 8.8E-05 32.0 6.2 65 56-125 2-77 (82)
89 cd00754 MoaD Ubiquitin domain 83.3 3.4 7.4E-05 31.7 5.5 58 63-125 14-75 (80)
90 TIGR02958 sec_mycoba_snm4 secr 82.8 4.5 9.7E-05 42.2 7.8 70 56-125 3-79 (452)
91 KOG0012 DNA damage inducible p 82.5 1.9 4.2E-05 44.0 4.8 63 63-125 11-75 (380)
92 PF14836 Ubiquitin_3: Ubiquiti 82.0 3.9 8.5E-05 33.9 5.6 58 66-124 15-78 (88)
93 PF10209 DUF2340: Uncharacteri 80.1 4.1 8.8E-05 35.7 5.3 55 71-125 22-107 (122)
94 cd06410 PB1_UP2 Uncharacterize 79.8 5 0.00011 33.5 5.7 39 60-99 17-56 (97)
95 cd06411 PB1_p51 The PB1 domain 77.1 4.5 9.8E-05 32.9 4.4 37 66-102 8-44 (78)
96 cd06397 PB1_UP1 Uncharacterize 76.3 5 0.00011 32.9 4.4 44 56-99 1-44 (82)
97 PF12754 Blt1: Cell-cycle cont 75.3 0.92 2E-05 45.3 0.0 64 53-116 76-160 (309)
98 PRK06488 sulfur carrier protei 71.1 18 0.0004 27.2 6.3 59 59-125 2-60 (65)
99 TIGR01687 moaD_arch MoaD famil 66.8 26 0.00057 27.6 6.7 57 65-125 16-83 (88)
100 cd00565 ThiS ThiaminS ubiquiti 66.8 15 0.00033 27.6 5.1 53 68-125 8-60 (65)
101 PF02017 CIDE-N: CIDE-N domain 65.6 18 0.00039 29.4 5.5 59 63-126 12-72 (78)
102 TIGR01682 moaD molybdopterin c 65.4 24 0.00052 27.5 6.1 55 66-125 17-75 (80)
103 cd06404 PB1_aPKC PB1 domain is 63.9 14 0.0003 30.4 4.6 45 56-100 1-46 (83)
104 PF14533 USP7_C2: Ubiquitin-sp 63.2 29 0.00063 32.5 7.2 48 66-113 35-90 (213)
105 cd06539 CIDE_N_A CIDE_N domain 61.4 36 0.00078 27.7 6.5 50 75-126 21-72 (78)
106 cd01615 CIDE_N CIDE_N domain, 61.4 37 0.0008 27.6 6.5 50 75-126 21-72 (78)
107 PRK05863 sulfur carrier protei 61.2 36 0.00078 25.9 6.2 58 60-125 3-60 (65)
108 PF14453 ThiS-like: ThiS-like 60.2 31 0.00068 26.4 5.6 48 68-126 9-56 (57)
109 TIGR00244 transcriptional regu 59.9 15 0.00034 33.1 4.5 36 164-200 88-123 (147)
110 PF09379 FERM_N: FERM N-termin 59.7 26 0.00057 26.8 5.3 54 63-116 5-65 (80)
111 PRK01777 hypothetical protein; 59.5 62 0.0013 27.0 7.8 62 55-125 3-75 (95)
112 PF10768 FliX: Class II flagel 58.9 15 0.00033 32.9 4.3 35 192-229 55-89 (139)
113 PRK05659 sulfur carrier protei 58.3 43 0.00094 25.0 6.2 60 59-125 2-61 (66)
114 TIGR01683 thiS thiamine biosyn 58.2 30 0.00066 26.0 5.3 53 68-125 7-59 (64)
115 smart00266 CAD Domains present 58.0 48 0.001 26.8 6.5 49 75-125 19-69 (74)
116 cd06537 CIDE_N_B CIDE_N domain 55.6 50 0.0011 27.1 6.4 50 75-126 21-71 (81)
117 PRK06083 sulfur carrier protei 55.5 70 0.0015 26.0 7.3 64 55-125 16-79 (84)
118 KOG2561 Adaptor protein NUB1, 55.1 4.8 0.0001 42.4 0.6 74 53-126 35-111 (568)
119 PF02597 ThiS: ThiS family; I 54.2 22 0.00047 26.9 4.0 58 66-125 13-72 (77)
120 PRK06944 sulfur carrier protei 54.0 66 0.0014 23.8 6.6 58 60-125 3-60 (65)
121 cd06536 CIDE_N_ICAD CIDE_N dom 53.9 53 0.0011 26.9 6.3 50 75-126 21-74 (80)
122 PF14451 Ub-Mut7C: Mut7-C ubiq 53.0 31 0.00066 28.0 4.8 52 65-125 23-75 (81)
123 cd06538 CIDE_N_FSP27 CIDE_N do 52.9 66 0.0014 26.3 6.7 50 75-126 21-71 (79)
124 PRK11130 moaD molybdopterin sy 51.7 89 0.0019 24.5 7.2 52 69-125 19-76 (81)
125 PRK05738 rplW 50S ribosomal pr 51.7 48 0.001 27.4 5.9 57 65-124 21-78 (92)
126 PRK12787 fliX flagellar assemb 50.2 26 0.00057 31.4 4.3 35 192-229 53-87 (138)
127 PTZ00186 heat shock 70 kDa pre 50.0 88 0.0019 34.3 9.2 58 164-225 563-621 (657)
128 PF14732 UAE_UbL: Ubiquitin/SU 48.6 53 0.0011 26.7 5.6 52 74-125 8-68 (87)
129 PF05008 V-SNARE: Vesicle tran 44.2 65 0.0014 24.9 5.3 39 184-227 3-41 (79)
130 smart00295 B41 Band 4.1 homolo 44.1 1.4E+02 0.003 26.3 8.1 69 56-124 4-81 (207)
131 cd06409 PB1_MUG70 The MUG70 pr 44.1 44 0.00095 27.5 4.5 50 63-126 9-61 (86)
132 PF14425 Imm3: Immunity protei 42.4 1E+02 0.0022 26.9 6.7 78 147-228 28-111 (117)
133 PF12436 USP7_ICP0_bdg: ICP0-b 42.3 21 0.00046 34.2 2.8 71 53-123 66-149 (249)
134 COG1327 Predicted transcriptio 41.5 44 0.00096 30.5 4.4 64 162-228 86-149 (156)
135 PF09403 FadA: Adhesion protei 41.1 71 0.0015 28.1 5.6 76 152-227 24-109 (126)
136 KOG3650 Predicted coiled-coil 40.7 39 0.00085 29.0 3.7 34 196-229 45-78 (120)
137 PF00276 Ribosomal_L23: Riboso 38.8 35 0.00077 27.9 3.2 41 65-105 21-62 (91)
138 PF03671 Ufm1: Ubiquitin fold 38.2 58 0.0012 26.4 4.1 59 66-124 17-76 (76)
139 PF11620 GABP-alpha: GA-bindin 38.0 50 0.0011 27.5 3.9 58 67-124 5-62 (88)
140 PF00788 RA: Ras association ( 38.0 72 0.0015 24.7 4.8 47 66-112 18-73 (93)
141 cd06401 PB1_TFG The PB1 domain 37.7 96 0.0021 25.5 5.4 33 57-89 2-35 (81)
142 PRK08053 sulfur carrier protei 37.2 1.8E+02 0.0038 22.0 6.7 59 60-125 3-61 (66)
143 PTZ00380 microtubule-associate 36.7 92 0.002 27.3 5.6 42 70-112 46-88 (121)
144 COG2104 ThiS Sulfur transfer p 35.9 1.6E+02 0.0035 23.1 6.3 61 58-125 3-63 (68)
145 cd01775 CYR1_RA Ubiquitin doma 35.8 91 0.002 26.5 5.2 68 58-125 5-86 (97)
146 KOG2086 Protein tyrosine phosp 35.5 71 0.0015 33.1 5.3 67 54-121 306-376 (380)
147 cd01766 Ufm1 Urm1-like ubiquit 33.3 1.1E+02 0.0024 25.0 5.1 58 68-125 19-77 (82)
148 PRK12280 rplW 50S ribosomal pr 32.3 1.2E+02 0.0027 27.7 5.9 41 65-105 23-64 (158)
149 PRK07440 hypothetical protein; 32.2 2.4E+02 0.0052 21.8 6.9 61 58-125 5-65 (70)
150 cd06405 PB1_Mekk2_3 The PB1 do 31.1 82 0.0018 25.7 4.0 45 56-103 1-45 (79)
151 cd01776 Rin1_RA Ubiquitin doma 30.9 1.1E+02 0.0024 25.5 4.8 44 65-108 14-62 (87)
152 KOG4842 Protein involved in si 30.9 25 0.00054 34.7 1.2 50 56-105 4-53 (278)
153 PF14817 HAUS5: HAUS augmin-li 30.7 3.7E+02 0.008 29.8 10.1 80 146-229 84-167 (632)
154 PRK08453 fliD flagellar cappin 29.8 71 0.0015 35.4 4.6 48 56-104 129-187 (673)
155 PF05531 NPV_P10: Nucleopolyhe 27.5 91 0.002 25.3 3.7 21 152-172 8-28 (75)
156 cd01760 RBD Ubiquitin-like dom 26.9 1.6E+02 0.0035 23.3 5.0 39 64-102 9-47 (72)
157 KOG3192 Mitochondrial J-type c 26.1 4.1E+02 0.0088 24.7 8.0 82 146-227 54-139 (168)
158 TIGR02978 phageshock_pspC phag 25.9 85 0.0019 27.3 3.6 38 146-184 82-120 (121)
159 COG0089 RplW Ribosomal protein 25.8 96 0.0021 26.1 3.7 39 65-103 22-61 (94)
160 PF08337 Plexin_cytopl: Plexin 25.3 1.3E+02 0.0028 32.6 5.5 76 52-127 186-290 (539)
161 PF10790 DUF2604: Protein of U 25.0 2E+02 0.0043 23.1 5.0 61 65-125 6-70 (76)
162 PRK07696 sulfur carrier protei 24.9 3.2E+02 0.0069 20.9 6.4 59 60-125 3-62 (67)
163 KOG0007 Splicing factor 3a, su 24.8 35 0.00076 34.2 1.1 47 62-108 290-337 (341)
164 PF11834 DUF3354: Domain of un 24.7 80 0.0017 25.0 2.9 45 74-124 25-69 (69)
165 PRK10697 DNA-binding transcrip 24.3 99 0.0021 27.0 3.6 39 145-184 78-117 (118)
166 cd01768 RA RA (Ras-associating 24.2 1.7E+02 0.0037 22.8 4.7 35 64-98 12-48 (87)
167 PF00794 PI3K_rbd: PI3-kinase 23.7 3.4E+02 0.0074 22.2 6.7 62 52-113 13-84 (106)
168 PF08149 BING4CT: BING4CT (NUC 23.3 67 0.0014 26.4 2.2 26 196-223 45-71 (80)
169 COG5100 NPL4 Nuclear pore prot 23.3 1.8E+02 0.0039 30.8 5.8 60 66-125 11-78 (571)
170 PF10459 Peptidase_S46: Peptid 22.9 3.9E+02 0.0084 29.9 8.7 28 106-133 229-256 (698)
171 KOG4829 Uncharacterized conser 22.9 2.2E+02 0.0048 27.4 5.8 70 155-224 164-236 (236)
172 PRK11840 bifunctional sulfur c 22.9 2.3E+02 0.005 28.9 6.4 59 59-124 2-60 (326)
173 smart00455 RBD Raf-like Ras-bi 22.0 2.4E+02 0.0052 22.0 5.1 45 64-108 9-55 (70)
174 KOG2689 Predicted ubiquitin re 21.8 1.9E+02 0.0042 28.9 5.5 70 54-124 209-285 (290)
175 cd06403 PB1_Par6 The PB1 domai 21.5 2E+02 0.0044 23.6 4.7 46 56-101 1-48 (80)
176 cd01764 Urm1 Urm1-like ubuitin 21.4 2.3E+02 0.005 23.3 5.1 59 65-125 17-89 (94)
177 smart00144 PI3K_rbd PI3-kinase 21.0 2.5E+02 0.0055 23.5 5.4 35 53-87 15-51 (108)
178 PF08825 E2_bind: E2 binding d 21.0 75 0.0016 25.9 2.1 56 69-125 1-70 (84)
179 CHL00030 rpl23 ribosomal prote 20.9 1.4E+02 0.0031 24.8 3.8 40 65-104 20-60 (93)
180 PF09429 Wbp11: WW domain bind 20.8 1.1E+02 0.0024 24.5 3.1 30 189-218 42-71 (78)
181 PF07028 DUF1319: Protein of u 20.8 5.4E+02 0.012 22.8 7.5 58 136-193 47-123 (126)
182 PF09269 DUF1967: Domain of un 20.3 63 0.0014 25.2 1.5 17 107-123 46-62 (69)
No 1
>KOG4361 consensus BCL2-associated athanogene-like proteins and related BAG family chaperone regulators [Signal transduction mechanisms]
Probab=99.80 E-value=1.7e-20 Score=184.91 Aligned_cols=212 Identities=40% Similarity=0.530 Sum_probs=175.6
Q ss_pred ccceeecCCceEEEeecCCCCC--CCCCCCeeEEEEEeCCEEEEEEEcCCCCHH---HHHHHHhcccCCCccCc--EEec
Q 018493 27 AHEWELRPGGMLVQKRNPDSDR--TSAPPPTIRVRVKYGSIYHEIHINSQATFG---ELKKLLTGPTGLHHEDQ--KLIY 99 (355)
Q Consensus 27 ~~~we~rpggmlvqkR~~~~~~--~~~~~~~I~V~VK~gg~~~~V~V~~~sTVg---dLK~~I~e~TGVppe~Q--KLIy 99 (355)
+..|+.|||||.||.|..+... .......|+|.+.++...+.+.+.+..+++ |+++.+.+.+|+....+ |++|
T Consensus 31 ~~~~~~~Pg~~~~q~r~~p~~~~~~~~~p~~~~v~~~~~~~~~~~~i~p~~~~g~~~d~a~~~~~~ag~sh~d~~~k~~y 110 (344)
T KOG4361|consen 31 GVDAAPRPGGMPVQQRPQPQPPLSWPHFPFGIRVQIEYGQLGHGLAIVPQYPSGNALDLAKPLTEDAGLSHYDQEVKLVY 110 (344)
T ss_pred CcccccCCCCCcCCcCCCCCCcccccccCCCccceeeecccccccccccccccccchhhhcccccccceeecccccccce
Confidence 6799999999999999853222 112456799999999988999999999888 99999999999999887 9999
Q ss_pred cCcc-cCCchhhhhcCCCCCCEEEEeecCCchHHHHHHHhhhhhhhhhhhhHHHHHHHHHHhhhhHH---HHHHHHHhCC
Q 018493 100 KDKE-RDSKAFLDVVGVKDKSKLVLVEDPISQEKRLLEMRKNAKLEKASKSISEISLEVDRLAGQVS---ALESIITKGG 175 (355)
Q Consensus 100 kGK~-ldD~~tLs~~GIKdgSkImLv~~p~s~E~~~~e~kk~k~ieka~~aIs~V~~eVDkLa~ev~---~LE~~I~~g~ 175 (355)
.+++ .|....|+.+|+++-++|.++.++.+...+...........++...+..+..+.+++.+++. ..+-....+.
T Consensus 111 ~~~e~rd~~l~l~~~g~p~~sk~~~~~~~~~q~~~~~~~~~~p~~~q~s~~v~~~~~~t~r~~~~~v~p~~~~~~~~~~~ 190 (344)
T KOG4361|consen 111 VDKELRDQSLRLSSAGVPDASKINVVPDPGSQRARQLGALVAPAPTQTSKNVSDPQLETYRLIGQVVDPEQKELVPNGGG 190 (344)
T ss_pred ecccccccccccccccCcccccceeccChhhcccccccccccccccccccccccccceeeeccccccchhhhhcccCCCC
Confidence 9999 67778999999999999999998887777755555555556666667666667776666664 3444566678
Q ss_pred CcchhhHhhHHHHHHH----HHHhccCCCCChhhHHHHHHHHHHHHHHHHHHHHhhhhcCCCCCCCC
Q 018493 176 KVAEKDVLNLIELLMN----QLLKLDGIMADGDVKLQRKMQVRRVQKYVETLDMLKIKNSMPSSNKH 238 (355)
Q Consensus 176 Kv~eke~~~LsE~LMq----~LLKLD~IeaeGdaR~qRK~~VkrVQ~~Le~LD~lk~~n~~~~~~~~ 238 (355)
+...+......+.||. .||++|.+.++||+...||..++|+|.+-+..|.|++.+++.+.+-.
T Consensus 191 q~e~~p~~~~iq~l~~~~~e~ll~~~~~~~~~dv~~~~~~~~~r~q~~seaq~~l~~~~s~~~~~~~ 257 (344)
T KOG4361|consen 191 QPESDPLVAQIQLLMNSLSEELLLLDAILPEGDVEVPRKPAVVRKQAYSEAQDLLKALDSTSNEEQP 257 (344)
T ss_pred CcCCChhhhhHHHhhhhcchhhhhhcccCCCcccccccccccccccchhhhhhhhhhcccccccccc
Confidence 8888888888999999 79999999999999999999999999999999999999887655533
No 2
>cd01813 UBP_N UBP ubiquitin processing protease. The UBP (ubiquitin processing protease) domain (also referred to as USP which stands for "ubiquitin-specific protease") is present at in a large family of cysteine proteases that specifically cleave ubiquitin conjugates. This family includes Rpn11, UBP6 (USP14), USP7 (HAUSP). This domain is closely related to the amino-terminal ubiquitin-like domain of BAG1 (Bcl2-associated anthanogene1) protein and is found only in eukaryotes.
Probab=99.76 E-value=1.8e-18 Score=136.12 Aligned_cols=71 Identities=25% Similarity=0.358 Sum_probs=68.6
Q ss_pred eEEEEEeCCEEEEEEEcCCCCHHHHHHHHhcccCCCccCcEEec---cCcccCCchhhhhcCCCCCCEEEEeec
Q 018493 56 IRVRVKYGSIYHEIHINSQATFGELKKLLTGPTGLHHEDQKLIY---KDKERDSKAFLDVVGVKDKSKLVLVED 126 (355)
Q Consensus 56 I~V~VK~gg~~~~V~V~~~sTVgdLK~~I~e~TGVppe~QKLIy---kGK~ldD~~tLs~~GIKdgSkImLv~~ 126 (355)
|+|.|||++..|+|+|++++||++||++|++.||||+++||||| +|+.++|+.+|++|||++|++|||||.
T Consensus 1 ~~i~vk~~g~~~~v~v~~~~Tv~~lK~~i~~~tgvp~~~QKLi~~~~~Gk~l~D~~~L~~~~i~~g~~i~lmGs 74 (74)
T cd01813 1 VPVIVKWGGQEYSVTTLSEDTVLDLKQFIKTLTGVLPERQKLLGLKVKGKPAEDDVKISALKLKPNTKIMMMGT 74 (74)
T ss_pred CEEEEEECCEEEEEEECCCCCHHHHHHHHHHHHCCCHHHEEEEeecccCCcCCCCcCHHHcCCCCCCEEEEEeC
Confidence 68999999999999999999999999999999999999999996 999999999999999999999999983
No 3
>cd01812 BAG1_N Ubiquitin-like domain of BAG1. BAG1_N N-terminal ubiquitin-like (Ubl) domain of the BAG1 protein. This domain occurs together with the BAG domain and is closely related to the Ubl domain of a family of deubiquitinases that includes Rpn11, UBP6 (USP14), USP7 (HAUSP).
Probab=99.70 E-value=3.4e-17 Score=125.00 Aligned_cols=71 Identities=59% Similarity=0.849 Sum_probs=68.8
Q ss_pred eEEEEEeCCEEEEEEEcCCCCHHHHHHHHhcccCCCccCcEEeccCcccCCchhhhhcCCCCCCEEEEeec
Q 018493 56 IRVRVKYGSIYHEIHINSQATFGELKKLLTGPTGLHHEDQKLIYKDKERDSKAFLDVVGVKDKSKLVLVED 126 (355)
Q Consensus 56 I~V~VK~gg~~~~V~V~~~sTVgdLK~~I~e~TGVppe~QKLIykGK~ldD~~tLs~~GIKdgSkImLv~~ 126 (355)
|+|+|+|++..++++|++++||++||++|++.+|+|+++|+|+|+|+.++|+.+|++|||++|++|+|+++
T Consensus 1 i~i~vk~~g~~~~i~v~~~~tv~~lK~~i~~~~gi~~~~q~L~~~g~~l~d~~~L~~~~i~~g~~l~v~~~ 71 (71)
T cd01812 1 IRVRVKHGGESHDLSISSQATFGDLKKMLAPVTGVEPRDQKLIFKGKERDDAETLDMSGVKDGSKVMLLED 71 (71)
T ss_pred CEEEEEECCEEEEEEECCCCcHHHHHHHHHHhhCCChHHeEEeeCCcccCccCcHHHcCCCCCCEEEEecC
Confidence 68999999999999999999999999999999999999999999999999999999999999999999974
No 4
>cd01807 GDX_N ubiquitin-like domain of GDX. GDX contains an N-terminal ubiquitin-like domain as well as an uncharacterized c-terminal domain. The function of GDX is unknown.
Probab=99.62 E-value=1e-15 Score=119.10 Aligned_cols=71 Identities=24% Similarity=0.334 Sum_probs=65.4
Q ss_pred EEEEEe-CCEEEEEEEcCCCCHHHHHHHHhcccCCCccCcEEeccCcccCCchhhhhcCCCCCCEEEEeecC
Q 018493 57 RVRVKY-GSIYHEIHINSQATFGELKKLLTGPTGLHHEDQKLIYKDKERDSKAFLDVVGVKDKSKLVLVEDP 127 (355)
Q Consensus 57 ~V~VK~-gg~~~~V~V~~~sTVgdLK~~I~e~TGVppe~QKLIykGK~ldD~~tLs~~GIKdgSkImLv~~p 127 (355)
.|.|+. +|..+.++|++++||++||++|++.+|+|+++|+|+|+|+.++|+.+|++|||++|++|+|+..+
T Consensus 2 ~i~vk~~~G~~~~l~v~~~~tV~~lK~~i~~~~gi~~~~q~L~~~G~~L~d~~~L~~~~i~~~~~l~l~~~~ 73 (74)
T cd01807 2 FLTVKLLQGRECSLQVSEKESVSTLKKLVSEHLNVPEEQQRLLFKGKALADDKRLSDYSIGPNAKLNLVVRP 73 (74)
T ss_pred EEEEEeCCCCEEEEEECCCCcHHHHHHHHHHHHCCCHHHeEEEECCEECCCCCCHHHCCCCCCCEEEEEEcC
Confidence 566774 56788999999999999999999999999999999999999999999999999999999998753
No 5
>cd01791 Ubl5 UBL5 ubiquitin-like modifier. UBL5 (also known as HUB1) is a ubiquitin-like modifier that is both widely expressed and highly phylogenetically conserved. At the C-terminal end of the ubiquitin-like fold of UBL5 is a di-tyrosine motif followed by a single variable residue instead of the characteristic di-glycine found in all other ubiquitin-like modifiers. ULB5 interacts with a cyclin-like kinase called CLK4 but not with other cyclin-like kinase family members.
Probab=99.60 E-value=1.8e-15 Score=119.05 Aligned_cols=70 Identities=24% Similarity=0.174 Sum_probs=66.0
Q ss_pred eeEEEEEe-CCEEEEEEEcCCCCHHHHHHHHhcccCCCccCcEEeccCcccCCchhhhhcCCCCCCEEEEe
Q 018493 55 TIRVRVKY-GSIYHEIHINSQATFGELKKLLTGPTGLHHEDQKLIYKDKERDSKAFLDVVGVKDKSKLVLV 124 (355)
Q Consensus 55 ~I~V~VK~-gg~~~~V~V~~~sTVgdLK~~I~e~TGVppe~QKLIykGK~ldD~~tLs~~GIKdgSkImLv 124 (355)
+|.|+|+. .|+.+.++|++++||++||++|++..|+++++|||+|+|+.++|+.+|++|||++|++|||.
T Consensus 1 ~~~i~vkt~~Gk~~~~~v~~~~TV~~LK~~I~~~~~~~~~~qrLi~~Gk~L~D~~tL~~ygi~~~stv~l~ 71 (73)
T cd01791 1 MIEVVCNDRLGKKVRVKCNPDDTIGDLKKLIAAQTGTRPEKIVLKKWYTIFKDHISLGDYEIHDGMNLELY 71 (73)
T ss_pred CEEEEEECCCCCEEEEEeCCCCcHHHHHHHHHHHhCCChHHEEEEeCCcCCCCCCCHHHcCCCCCCEEEEE
Confidence 47888987 47889999999999999999999999999999999999999999999999999999999985
No 6
>cd01793 Fubi Fubi ubiquitin-like protein. Fubi is a ubiquitin-like protein encoded by the fau gene which has an N-terminal ubiquitin-like domain (also referred to as FUBI) fused to the ribosomal protein S30. Fubi is thought to be a tumor suppressor protein and the FUBI domain may act as a substitute or an inhibitor of ubiquitin or one of ubiquitin's close relatives UCRP, FAT10, and Nedd8.
Probab=99.57 E-value=5.1e-15 Score=115.38 Aligned_cols=69 Identities=23% Similarity=0.356 Sum_probs=64.1
Q ss_pred eEEEEEeCCEEEEEEEcCCCCHHHHHHHHhcccCCCccCcEEeccCcccCCchhhhhcCCCCCCEEEEee
Q 018493 56 IRVRVKYGSIYHEIHINSQATFGELKKLLTGPTGLHHEDQKLIYKDKERDSKAFLDVVGVKDKSKLVLVE 125 (355)
Q Consensus 56 I~V~VK~gg~~~~V~V~~~sTVgdLK~~I~e~TGVppe~QKLIykGK~ldD~~tLs~~GIKdgSkImLv~ 125 (355)
+.|.|+.+ .++.++|++++||++||++|++.+|+|+++|+|+|.||.++|+.+|++|||+++++|+|+.
T Consensus 1 mqi~vk~~-~~~~l~v~~~~tV~~lK~~i~~~~gip~~~q~Li~~Gk~L~D~~tL~~~~i~~~~tl~l~~ 69 (74)
T cd01793 1 MQLFVRAQ-NTHTLEVTGQETVSDIKAHVAGLEGIDVEDQVLLLAGVPLEDDATLGQCGVEELCTLEVAG 69 (74)
T ss_pred CEEEEECC-CEEEEEECCcCcHHHHHHHHHhhhCCCHHHEEEEECCeECCCCCCHHHcCCCCCCEEEEEE
Confidence 35677765 6789999999999999999999999999999999999999999999999999999999975
No 7
>PF02179 BAG: BAG domain; InterPro: IPR003103 BAG domains are present in Bcl-2-associated athanogene 1 and silencer of death domains. The BAG proteins are modulators of chaperone activity, they bind to HSP70/HSC70 proteins and promote substrate release. The proteins have anti-apoptotic activity and increase the anti-cell death function of BCL-2 induced by various stimuli. BAG-1 binds to the serine/threonine kinase Raf-1 or Hsc70/Hsp70 in a mutually exclusive interaction. BAG-1 promotes cell growth by binding to and stimulating Raf-1 activity. The binding of Hsp70 to BAG-1 diminishes Raf-1 signalling and inhibits subsequent events, such as DNA synthesis, as well as arrests the cell cycle. BAG-1 has been suggested to function as a molecular switch that encourages cells to proliferate in normal conditions but become quiescent under a stressful environment []. BAG-family proteins contain a single BAG domain, except for human BAG-5 which has four BAG repeats. The BAG domain is a conserved region located at the C terminus of the BAG-family proteins that binds the ATPase domain of Hsc70/Hsp70. The BAG domain is evolutionarily conserved, and BAG domain containing proteins have been described and/or proven in a variety of organisms including Mus musculus (Mouse), Xenopus spp., Drosophila spp., Bombyx mori (Silk moth), Caenorhabditis elegans, Saccharomyces cerevisiae (Baker's yeast), Schizosaccharomyces pombe (Fission yeast), and Arabidopsis thaliana (Mouse-ear cress). The BAG domain has 110-124 amino acids and is comprised of three anti-parallel alpha-helices, each approximately 30-40 amino acids in length. The first and second helices interact with the serine/threonine kinase Raf-1 and the second and third helices are the sites of the BAG domain interaction with the ATPase domain of Hsc70/Hsp70. Binding of the BAG domain to the ATPase domain is mediated by both electrostatic and hydrophobic interactions in BAG-1 and is energy requiring.; GO: 0051087 chaperone binding; PDB: 1M7K_A 1M62_A 1T7S_A 1UGO_A 1I6Z_A 3A8Y_C 1UK5_A 3FZM_B 3FZL_B 3M3Z_B ....
Probab=99.57 E-value=6.2e-15 Score=116.44 Aligned_cols=72 Identities=43% Similarity=0.673 Sum_probs=61.3
Q ss_pred HHHHHHHHHH-hhhhHHHHHHHHHhCCCcchhhHhhHHHHHHHHHHhccCCCCCh--hhHHHHHHHHHHHHHHHHHHHHh
Q 018493 150 ISEISLEVDR-LAGQVSALESIITKGGKVAEKDVLNLIELLMNQLLKLDGIMADG--DVKLQRKMQVRRVQKYVETLDML 226 (355)
Q Consensus 150 Is~V~~eVDk-La~ev~~LE~~I~~g~Kv~eke~~~LsE~LMq~LLKLD~IeaeG--daR~qRK~~VkrVQ~~Le~LD~l 226 (355)
|..+..+|+. |.+++..+ +.+..++++.+|+|+||+.|++||+|+++| ++|.+||.+|++||++|+.||.+
T Consensus 2 I~~i~~~v~~~l~~~v~~~------~~~~~~~~~~~l~E~L~~~LlkLD~I~~~g~~~iR~~RK~~v~~iq~~l~~lD~~ 75 (76)
T PF02179_consen 2 IEKIIDEVEKELQPEVEQF------DGKKDEKEYLRLSEMLMQLLLKLDSIETEGNPEIREKRKQAVKRIQQLLDKLDSL 75 (76)
T ss_dssp HHHHHHHHHHCHHHHHHHH------HHHHCCHHHHHHHHHHHHHHHHHHTCECSSSHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHH------hccCcHHHHHHHHHHHHHHHHHhcCcccCCCHHHHHHHHHHHHHHHHHHHHHHcc
Confidence 5566667775 66666555 444559999999999999999999999988 89999999999999999999997
Q ss_pred h
Q 018493 227 K 227 (355)
Q Consensus 227 k 227 (355)
|
T Consensus 76 k 76 (76)
T PF02179_consen 76 K 76 (76)
T ss_dssp H
T ss_pred C
Confidence 6
No 8
>cd01809 Scythe_N Ubiquitin-like domain of Scythe protein. Scythe protein (also known as Bat3) is an apoptotic regulator that is highly conserved in eukaryotes and contains a ubiquitin-like domain near its N-terminus. Scythe binds reaper, a potent apoptotic inducer, and Scythe/Reaper are thought to signal apoptosis, in part through regulating the folding and activity of apoptotic signaling molecules.
Probab=99.57 E-value=6.8e-15 Score=112.20 Aligned_cols=70 Identities=27% Similarity=0.394 Sum_probs=65.2
Q ss_pred eEEEEEe-CCEEEEEEEcCCCCHHHHHHHHhcccCCCccCcEEeccCcccCCchhhhhcCCCCCCEEEEee
Q 018493 56 IRVRVKY-GSIYHEIHINSQATFGELKKLLTGPTGLHHEDQKLIYKDKERDSKAFLDVVGVKDKSKLVLVE 125 (355)
Q Consensus 56 I~V~VK~-gg~~~~V~V~~~sTVgdLK~~I~e~TGVppe~QKLIykGK~ldD~~tLs~~GIKdgSkImLv~ 125 (355)
|+|.|++ .+..+.+.+++++||++||++|++.+|+|+++|+|+|+|+.++|+.+|++|||++|++|+|+.
T Consensus 1 i~i~vk~~~g~~~~~~v~~~~tv~~lK~~i~~~~gi~~~~q~L~~~g~~L~d~~~L~~~~i~~~~~l~l~~ 71 (72)
T cd01809 1 IEIKVKTLDSQTHTFTVEEEITVLDLKEKIAEEVGIPVEQQRLIYSGRVLKDDETLSEYKVEDGHTIHLVK 71 (72)
T ss_pred CEEEEEeCCCCEEEEEECCCCcHHHHHHHHHHHHCcCHHHeEEEECCEECCCcCcHHHCCCCCCCEEEEEe
Confidence 5778886 467899999999999999999999999999999999999999999999999999999999974
No 9
>cd01804 midnolin_N Ubiquitin-like domain of midnolin. midnolin_N Midnolin (midbrain nucleolar protein) is expressed in the nucleolus and is thought to regulate genes involved in neurogenesis. Midnolin contains an amino-terminal ubiquitin-like domain.
Probab=99.55 E-value=1.1e-14 Score=115.28 Aligned_cols=70 Identities=21% Similarity=0.295 Sum_probs=64.3
Q ss_pred eEEEEEe-CCEEEEEEEcCCCCHHHHHHHHhcccCCCccCcEEeccCcccCCchhhhhcCCCCCCEEEEeec
Q 018493 56 IRVRVKY-GSIYHEIHINSQATFGELKKLLTGPTGLHHEDQKLIYKDKERDSKAFLDVVGVKDKSKLVLVED 126 (355)
Q Consensus 56 I~V~VK~-gg~~~~V~V~~~sTVgdLK~~I~e~TGVppe~QKLIykGK~ldD~~tLs~~GIKdgSkImLv~~ 126 (355)
++|+|+. .|..++|+|++++||++||+.|++.+|+++++|||+|+|+.++|+ +|++|||++|++|+|+..
T Consensus 2 m~I~Vk~~~G~~~~l~v~~~~TV~~LK~~I~~~~~~~~~~qrL~~~Gk~L~d~-~L~~~gi~~~~~i~l~~~ 72 (78)
T cd01804 2 MNLNIHSTTGTRFDLSVPPDETVEGLKKRISQRLKVPKERLALLHRETRLSSG-KLQDLGLGDGSKLTLVPT 72 (78)
T ss_pred eEEEEEECCCCEEEEEECCcCHHHHHHHHHHHHhCCChHHEEEEECCcCCCCC-cHHHcCCCCCCEEEEEee
Confidence 5677775 467799999999999999999999999999999999999999998 999999999999999863
No 10
>cd01805 RAD23_N Ubiquitin-like domain of RAD23. RAD23 belongs to a family of adaptor molecules having affinity for both the proteasome and ubiquitinylated proteins and thought to shuttle these ubiquitinylated proteins to the proteasome for destruction. RAD23 interacts with ubiquitin through its C-terminal ubiquitin-associated domains (UBA) and with the proteasome through its N-terminal ubiquitin-like domain (UBL).
Probab=99.55 E-value=1.4e-14 Score=112.48 Aligned_cols=70 Identities=24% Similarity=0.339 Sum_probs=64.6
Q ss_pred EEEEEe-CCEEEEEEEcCCCCHHHHHHHHhcccCC--CccCcEEeccCcccCCchhhhhcCCCCCCEEEEeec
Q 018493 57 RVRVKY-GSIYHEIHINSQATFGELKKLLTGPTGL--HHEDQKLIYKDKERDSKAFLDVVGVKDKSKLVLVED 126 (355)
Q Consensus 57 ~V~VK~-gg~~~~V~V~~~sTVgdLK~~I~e~TGV--ppe~QKLIykGK~ldD~~tLs~~GIKdgSkImLv~~ 126 (355)
.|+|+. +|..+.+++++++||++||+.|++.+|+ ++++|+|+|+|+.++|+.+|++|||++|++|+|+..
T Consensus 2 ~i~vk~~~g~~~~l~v~~~~TV~~lK~~i~~~~~i~~~~~~q~L~~~G~~L~d~~~L~~~~i~~~~~i~~~~~ 74 (77)
T cd01805 2 KITFKTLKQQTFPIEVDPDDTVAELKEKIEEEKGCDYPPEQQKLIYSGKILKDDTTLEEYKIDEKDFVVVMVS 74 (77)
T ss_pred EEEEEeCCCCEEEEEECCCCcHHHHHHHHHHhhCCCCChhHeEEEECCEEccCCCCHHHcCCCCCCEEEEEEe
Confidence 566664 5688999999999999999999999999 999999999999999999999999999999999864
No 11
>cd01798 parkin_N amino-terminal ubiquitin-like of parkin protein. parkin_N parkin protein is a RING-type E3 ubiquitin ligase with an amino-terminal ubiquitin-like (Ubl) domain and an RBR signature consisting of two RING finger domains separated by an IBR/DRIL domain. Naturally occurring mutations in parkin are thought to cause the disease AR_JP (autosomal-recessive juvenile parkinsonism). Parkin binds the Rpn10 subunit of 26S proteasomes through its Ubl domain.
Probab=99.53 E-value=1.4e-14 Score=111.53 Aligned_cols=67 Identities=15% Similarity=0.274 Sum_probs=62.0
Q ss_pred EEEe-CCEEEEEEEcCCCCHHHHHHHHhcccCCCccCcEEeccCcccCCchhhhhcCCCCCCEEEEee
Q 018493 59 RVKY-GSIYHEIHINSQATFGELKKLLTGPTGLHHEDQKLIYKDKERDSKAFLDVVGVKDKSKLVLVE 125 (355)
Q Consensus 59 ~VK~-gg~~~~V~V~~~sTVgdLK~~I~e~TGVppe~QKLIykGK~ldD~~tLs~~GIKdgSkImLv~ 125 (355)
.|+. +|..+.+++++++||++||++|++.+|+|+++|+|+|+|+.++|+.+|++|||++||+|+|+.
T Consensus 2 ~vk~~~g~~~~~~v~~~~tV~~lK~~i~~~~gi~~~~q~Li~~G~~L~d~~~l~~~~i~~~stl~l~~ 69 (70)
T cd01798 2 YVRTNTGHTFPVEVDPDTDIKQLKEVVAKRQGVPPDQLRVIFAGKELRNTTTIQECDLGQQSILHAVR 69 (70)
T ss_pred EEEcCCCCEEEEEECCCChHHHHHHHHHHHHCCCHHHeEEEECCeECCCCCcHHHcCCCCCCEEEEEe
Confidence 3443 567788999999999999999999999999999999999999999999999999999999985
No 12
>PF00240 ubiquitin: Ubiquitin family; InterPro: IPR000626 Ubiquitinylation is an ATP-dependent process that involves the action of at least three enzymes: a ubiquitin-activating enzyme (E1, IPR000011 from INTERPRO), a ubiquitin-conjugating enzyme (E2, IPR000608 from INTERPRO), and a ubiquitin ligase (E3, IPR000569 from INTERPRO, IPR003613 from INTERPRO), which work sequentially in a cascade. There are many different E3 ligases, which are responsible for the type of ubiquitin chain formed, the specificity of the target protein, and the regulation of the ubiquitinylation process []. Ubiquitinylation is an important regulatory tool that controls the concentration of key signalling proteins, such as those involved in cell cycle control, as well as removing misfolded, damaged or mutant proteins that could be harmful to the cell. Several ubiquitin-like molecules have been discovered, such as Ufm1 (IPR005375 from INTERPRO), SUMO1 (IPR003653 from INTERPRO), NEDD8, Rad23 (IPR004806 from INTERPRO), Elongin B and Parkin (IPR003977 from INTERPRO), the latter being involved in Parkinson's disease []. Ubiquitin is a protein of 76 amino acid residues, found in all eukaryotic cells and whose sequence is extremely well conserved from protozoan to vertebrates. Ubiquitin acts through its post-translational attachment (ubiquitinylation) to other proteins, where these modifications alter the function, location or trafficking of the protein, or targets it for destruction by the 26S proteasome []. The terminal glycine in the C-terminal 4-residue tail of ubiquitin can form an isopeptide bond with a lysine residue in the target protein, or with a lysine in another ubiquitin molecule to form a ubiquitin chain that attaches itself to a target protein. Ubiquitin has seven lysine residues, any one of which can be used to link ubiquitin molecules together, resulting in different structures that alter the target protein in different ways. It appears that Lys(11)-, Lys(29) and Lys(48)-linked poly-ubiquitin chains target the protein to the proteasome for degradation, while mono-ubiquitinylated and Lys(6)- or Lys(63)-linked poly-ubiquitin chains signal reversible modifications in protein activity, location or trafficking []. For example, Lys(63)-linked poly-ubiquitinylation is known to be involved in DNA damage tolerance, inflammatory response, protein trafficking and signal transduction through kinase activation []. In addition, the length of the ubiquitin chain alters the fate of the target protein. Regulatory proteins such as transcription factors and histones are frequent targets of ubquitinylation [].; GO: 0005515 protein binding; PDB: 2DZI_A 2XEW_E 3NOB_E 2KWU_B 2Y5B_F 3PHD_G 2KWV_B 2KOX_A 2XK5_B 3NHE_B ....
Probab=99.53 E-value=1.8e-14 Score=109.53 Aligned_cols=65 Identities=32% Similarity=0.501 Sum_probs=61.7
Q ss_pred CCEEEEEEEcCCCCHHHHHHHHhcccCCCccCcEEeccCcccCCchhhhhcCCCCCCEEEEeecC
Q 018493 63 GSIYHEIHINSQATFGELKKLLTGPTGLHHEDQKLIYKDKERDSKAFLDVVGVKDKSKLVLVEDP 127 (355)
Q Consensus 63 gg~~~~V~V~~~sTVgdLK~~I~e~TGVppe~QKLIykGK~ldD~~tLs~~GIKdgSkImLv~~p 127 (355)
.|..|.++|++++||++||++|++.+|+|++.|+|+|+|+.++|+.+|++|||++|++|+|+.++
T Consensus 4 ~g~~~~~~v~~~~tV~~lK~~i~~~~~~~~~~~~L~~~G~~L~d~~tL~~~~i~~~~~I~l~~k~ 68 (69)
T PF00240_consen 4 SGKTFTLEVDPDDTVADLKQKIAEETGIPPEQQRLIYNGKELDDDKTLSDYGIKDGSTIHLVIKP 68 (69)
T ss_dssp TSEEEEEEEETTSBHHHHHHHHHHHHTSTGGGEEEEETTEEESTTSBTGGGTTSTTEEEEEEESS
T ss_pred CCcEEEEEECCCCCHHHhhhhcccccccccccceeeeeeecccCcCcHHHcCCCCCCEEEEEEec
Confidence 46789999999999999999999999999999999999999999999999999999999998753
No 13
>cd01794 DC_UbP_C dendritic cell derived ubiquitin-like protein. DC_UbP (dendritic cell derived ubiquitin-like protein) is a ubiquitin-like protein from human dendritic cells that is expressed in the mitochondrion. The ubiquitin-like domain of this protein is found at the C-terminus and lacks the canonical gly-gly motif of ubiquitin required for ubiquitinization. DC_UbP is expressed in tumor cells but not in normal human adult tissue suggesting a role for DC_UbP in tumorogenesis.
Probab=99.52 E-value=1.8e-14 Score=112.30 Aligned_cols=63 Identities=19% Similarity=0.250 Sum_probs=60.1
Q ss_pred CCEEEEEEEcCCCCHHHHHHHHhcccCCCccCcEEeccCcccCCchhhhhcCCCCCCEEEEee
Q 018493 63 GSIYHEIHINSQATFGELKKLLTGPTGLHHEDQKLIYKDKERDSKAFLDVVGVKDKSKLVLVE 125 (355)
Q Consensus 63 gg~~~~V~V~~~sTVgdLK~~I~e~TGVppe~QKLIykGK~ldD~~tLs~~GIKdgSkImLv~ 125 (355)
+|.++.++|++++||++||++|++..|+|+++|+|+|+|+.++|+.+|.+|||++|++|+|+.
T Consensus 7 ~G~~~~l~v~~~~TV~~lK~~I~~~~gi~~~~q~Li~~G~~L~D~~~l~~~~i~~~~tv~~~~ 69 (70)
T cd01794 7 TGKDVKLSVSSKDTVGQLKKQLQAAEGVDPCCQRWFFSGKLLTDKTRLQETKIQKDYVVQVIV 69 (70)
T ss_pred CCCEEEEEECCcChHHHHHHHHHHHhCCCHHHeEEEECCeECCCCCCHHHcCCCCCCEEEEEe
Confidence 457789999999999999999999999999999999999999999999999999999999974
No 14
>cd01796 DDI1_N DNA damage inducible protein 1 ubiquitin-like domain. DDI1_N DDI1 (DNA damage inducible protein 1) has an amino-terminal ubiquitin-like domain, an retroviral protease-like (RVP-like) domain, and a UBA (ubiquitin-associated) domain. This CD represents the amino-terminal ubiquitin-like domain of DDI1.
Probab=99.52 E-value=2.1e-14 Score=111.61 Aligned_cols=67 Identities=24% Similarity=0.394 Sum_probs=60.9
Q ss_pred EEEEEeCCEEEEEEEcCCCCHHHHHHHHhcccCCCccCcEEeccCcccCCc-hhhhhcCCCCCCEEEE
Q 018493 57 RVRVKYGSIYHEIHINSQATFGELKKLLTGPTGLHHEDQKLIYKDKERDSK-AFLDVVGVKDKSKLVL 123 (355)
Q Consensus 57 ~V~VK~gg~~~~V~V~~~sTVgdLK~~I~e~TGVppe~QKLIykGK~ldD~-~tLs~~GIKdgSkImL 123 (355)
+|+...++.++.+++++++||++||++|++.+|+|+++|+|+|+||.++|+ .+|++|||++|++|+|
T Consensus 2 ~v~~~~~g~~~~l~v~~~~TV~~lK~~I~~~~gip~~~q~Li~~Gk~L~D~~~~L~~~gi~~~~~l~l 69 (71)
T cd01796 2 TVYTARSETTFSLDVDPDLELENFKALCEAESGIPASQQQLIYNGRELVDNKRLLALYGVKDGDLVVL 69 (71)
T ss_pred EEEECCCCCEEEEEECCcCCHHHHHHHHHHHhCCCHHHeEEEECCeEccCCcccHHHcCCCCCCEEEE
Confidence 455554677899999999999999999999999999999999999999876 6899999999999987
No 15
>cd01797 NIRF_N amino-terminal ubiquitin-like domain of Np95 and NIRF. NIRF_N This CD represents the amino-terminal ubiquitin-like domain of a family of nuclear proteins that includes Np95 and NIRF (Np95/ICBP90-like RING finger) protein. Both Np95 and NIRF have a domain architecture consisting of a ubiquitin-like domain, a PHD finger, a YDG/SRA domain, Rb-binding motifs and a RING finger domain. Both Np95 and NIRF are ubiquitin ligases that ubiquitinate PCNP (PEST-containing nuclear proteins). While Np95 is capable of binding histones, NIRF is involved in cell cycle regulation.
Probab=99.52 E-value=2.5e-14 Score=113.68 Aligned_cols=71 Identities=17% Similarity=0.215 Sum_probs=62.7
Q ss_pred EEEEEe--CCEEEEEE-EcCCCCHHHHHHHHhcccCCCccCcEEeccCcccCCchhhhhcCCCCCCEEEEeecC
Q 018493 57 RVRVKY--GSIYHEIH-INSQATFGELKKLLTGPTGLHHEDQKLIYKDKERDSKAFLDVVGVKDKSKLVLVEDP 127 (355)
Q Consensus 57 ~V~VK~--gg~~~~V~-V~~~sTVgdLK~~I~e~TGVppe~QKLIykGK~ldD~~tLs~~GIKdgSkImLv~~p 127 (355)
.|+|+. |...+.++ +.+++||++||++|++.+|+|+++|||+|+||.++|+.+|++|||++|++|+|+...
T Consensus 2 ~I~vk~~~G~~~~~l~~v~~~~TV~~lK~~i~~~~gi~~~~QrLi~~Gk~L~D~~tL~~y~i~~~~~i~l~~~~ 75 (78)
T cd01797 2 WIQVRTMDGKETRTVDSLSRLTKVEELREKIQELFNVEPECQRLFYRGKQMEDGHTLFDYNVGLNDIIQLLVRQ 75 (78)
T ss_pred EEEEEcCCCCEEEEeeccCCcCcHHHHHHHHHHHhCCCHHHeEEEeCCEECCCCCCHHHcCCCCCCEEEEEEec
Confidence 455664 44446885 889999999999999999999999999999999999999999999999999998643
No 16
>smart00264 BAG BAG domains, present in regulator of Hsp70 proteins. BAG domains, present in Bcl-2-associated athanogene 1 and silencer of death domains
Probab=99.51 E-value=5.5e-14 Score=112.36 Aligned_cols=54 Identities=43% Similarity=0.595 Sum_probs=50.9
Q ss_pred CCCcchhhHhhHHHHHHHHHHhccCCCCCh--hhHHHHHHHHHHHHHHHHHHHHhh
Q 018493 174 GGKVAEKDVLNLIELLMNQLLKLDGIMADG--DVKLQRKMQVRRVQKYVETLDMLK 227 (355)
Q Consensus 174 g~Kv~eke~~~LsE~LMq~LLKLD~IeaeG--daR~qRK~~VkrVQ~~Le~LD~lk 227 (355)
.+++.+++|++|+|+||+.|++||+|+++| ++|.+||.+|++||++++.||.++
T Consensus 24 ~~~~~~~~~~~l~E~l~~~LlkLD~i~~~g~~~~R~~RK~~v~~iq~~l~~lD~~~ 79 (79)
T smart00264 24 DGKKDDKEYLRLSEELMKLLLKLDSVDVEGCPDIREARKRLVRLIQNLLNALDSKK 79 (79)
T ss_pred cchhHHHHHHHHHHHHHHHHHHHcCcCcCCcHHHHHHHHHHHHHHHHHHHHHhccC
Confidence 467789999999999999999999999999 899999999999999999999864
No 17
>cd01808 hPLIC_N Ubiquitin-like domain of hPLIC-1 and hPLIC2. hPLIC-1 and hPLIC-2 (human homologs of the yeast ubiquitin-like Dsk2 protein) are type2 UBL's (ubiquitin-like) proteins that are thought to serve as adaptors that link the ubiquitination machinery to the proteasome. The hPLIC's have an N-terminal UBL domain that binds the S5a subunit of the proteasome and a C-terminal UBA (ubiquitin-associated) domain that binds a ubiquitylated protein.
Probab=99.50 E-value=3.5e-14 Score=109.67 Aligned_cols=70 Identities=26% Similarity=0.263 Sum_probs=62.3
Q ss_pred eEEEEEeCCEEEEEEEcCCCCHHHHHHHHhcccCCCccCcEEeccCcccCCchhhhhcCCCCCCEEEEee
Q 018493 56 IRVRVKYGSIYHEIHINSQATFGELKKLLTGPTGLHHEDQKLIYKDKERDSKAFLDVVGVKDKSKLVLVE 125 (355)
Q Consensus 56 I~V~VK~gg~~~~V~V~~~sTVgdLK~~I~e~TGVppe~QKLIykGK~ldD~~tLs~~GIKdgSkImLv~ 125 (355)
|+|+|+.....+.+++++++||++||+.|++.+|+++++|+|+|+|+.++|+.+|++|||++|++|+|+-
T Consensus 1 ~~i~vk~~~g~~~l~v~~~~TV~~lK~~I~~~~~i~~~~~~Li~~Gk~L~d~~tL~~~~i~~~stl~l~~ 70 (71)
T cd01808 1 IKVTVKTPKDKEEIEIAEDASVKDFKEAVSKKFKANQEQLVLIFAGKILKDTDTLTQHNIKDGLTVHLVI 70 (71)
T ss_pred CEEEEEcCCCCEEEEECCCChHHHHHHHHHHHhCCCHHHEEEEECCeEcCCCCcHHHcCCCCCCEEEEEE
Confidence 4566775322358999999999999999999999999999999999999999999999999999999974
No 18
>cd01810 ISG15_repeat2 ISG15 ubiquitin-like protein, second repeat of 2. ISG15 is a ubiquitin-like protein containing two ubiquitin homology domains and becomes conjugated to a variety of proteins when cells are treated with type I interferon or lipopolysaccharide. Although ISG15 has properties similar to those of other ubiquitin-like molecules, it is a unique member of the ubiquitin-like superfamily, whose expression and conjugation to target proteins are tightly regulated by specific signaling pathways, indicating it may have specialized functions in the immune system.
Probab=99.49 E-value=4.8e-14 Score=109.87 Aligned_cols=67 Identities=12% Similarity=0.130 Sum_probs=61.9
Q ss_pred EEEe-CCEEEEEEEcCCCCHHHHHHHHhcccCCCccCcEEeccCcccCCchhhhhcCCCCCCEEEEee
Q 018493 59 RVKY-GSIYHEIHINSQATFGELKKLLTGPTGLHHEDQKLIYKDKERDSKAFLDVVGVKDKSKLVLVE 125 (355)
Q Consensus 59 ~VK~-gg~~~~V~V~~~sTVgdLK~~I~e~TGVppe~QKLIykGK~ldD~~tLs~~GIKdgSkImLv~ 125 (355)
.|+. .++++.++|++++||++||++|++.+|+|+++|+|+|+|+.|+|+.+|++|||++|++|+|+.
T Consensus 2 ~vk~~~g~~~~l~v~~~~tV~~lK~~I~~~~gi~~~~q~L~~~G~~L~D~~tL~~~~i~~~~tl~l~~ 69 (74)
T cd01810 2 LVRNDKGRSSIYEVQLTQTVATLKQQVSQRERVQADQFWLSFEGRPMEDEHPLGEYGLKPGCTVFMNL 69 (74)
T ss_pred EEECCCCCEEEEEECCcChHHHHHHHHHHHhCCCHHHeEEEECCEECCCCCCHHHcCCCCCCEEEEEE
Confidence 4553 467889999999999999999999999999999999999999999999999999999999975
No 19
>PTZ00044 ubiquitin; Provisional
Probab=99.48 E-value=7.4e-14 Score=108.42 Aligned_cols=70 Identities=19% Similarity=0.241 Sum_probs=64.8
Q ss_pred EEEEEe-CCEEEEEEEcCCCCHHHHHHHHhcccCCCccCcEEeccCcccCCchhhhhcCCCCCCEEEEeec
Q 018493 57 RVRVKY-GSIYHEIHINSQATFGELKKLLTGPTGLHHEDQKLIYKDKERDSKAFLDVVGVKDKSKLVLVED 126 (355)
Q Consensus 57 ~V~VK~-gg~~~~V~V~~~sTVgdLK~~I~e~TGVppe~QKLIykGK~ldD~~tLs~~GIKdgSkImLv~~ 126 (355)
.|.|+. .|.++.+.|++++||++||++|++.+|+|++.|+|+|+|+.++|+.+|++|||++|++|+|+..
T Consensus 2 ~i~vk~~~G~~~~l~v~~~~tv~~lK~~i~~~~gi~~~~q~L~~~g~~L~d~~~l~~~~i~~~~~i~l~~~ 72 (76)
T PTZ00044 2 QILIKTLTGKKQSFNFEPDNTVQQVKMALQEKEGIDVKQIRLIYSGKQMSDDLKLSDYKVVPGSTIHMVLQ 72 (76)
T ss_pred EEEEEeCCCCEEEEEECCCCcHHHHHHHHHHHHCCCHHHeEEEECCEEccCCCcHHHcCCCCCCEEEEEEE
Confidence 567775 5678899999999999999999999999999999999999999999999999999999999853
No 20
>cd01806 Nedd8 Nebb8-like ubiquitin protein. Nedd8 (also known as Rub1) has a single conserved ubiquitin-like domain that is part of a protein modification pathway similar to that of ubiquitin. Nedd8 modifies a family of molecular scaffold proteins called cullins that are responsible for assembling the ROC1/Rbx1 RING-based E3 ubiquitin ligases, of which several play a direct role in tumorigenesis.
Probab=99.48 E-value=1.1e-13 Score=106.66 Aligned_cols=70 Identities=23% Similarity=0.281 Sum_probs=64.5
Q ss_pred eEEEEEe-CCEEEEEEEcCCCCHHHHHHHHhcccCCCccCcEEeccCcccCCchhhhhcCCCCCCEEEEee
Q 018493 56 IRVRVKY-GSIYHEIHINSQATFGELKKLLTGPTGLHHEDQKLIYKDKERDSKAFLDVVGVKDKSKLVLVE 125 (355)
Q Consensus 56 I~V~VK~-gg~~~~V~V~~~sTVgdLK~~I~e~TGVppe~QKLIykGK~ldD~~tLs~~GIKdgSkImLv~ 125 (355)
+.|+|+. +|..+.+.|+++.||++||++|++.+|+|+++|+|+|.|+.++|+.+|++|||++|++|+|+.
T Consensus 1 m~i~v~~~~g~~~~~~v~~~~tv~~lK~~i~~~~g~~~~~qrL~~~g~~L~d~~tl~~~~i~~g~~i~l~~ 71 (76)
T cd01806 1 MLIKVKTLTGKEIEIDIEPTDKVERIKERVEEKEGIPPQQQRLIYSGKQMNDDKTAADYKLEGGSVLHLVL 71 (76)
T ss_pred CEEEEEeCCCCEEEEEECCCCCHHHHHHHHhHhhCCChhhEEEEECCeEccCCCCHHHcCCCCCCEEEEEE
Confidence 3566775 567789999999999999999999999999999999999999999999999999999999986
No 21
>cd01792 ISG15_repeat1 ISG15 ubiquitin-like protein, first repeat of 2. ISG15 is a ubiquitin-like protein containing two ubiquitin homology domains that becomes conjugated to a variety of proteins when cells are treated with type I interferon or lipopolysaccharide. Although ISG15 has properties similar to those of other ubiquitin-like molecules, it is a unique member of the ubiquitin-like superfamily, whose expression and conjugation to target proteins are tightly regulated by specific signaling pathways, indicating it may have specialized functions in the immune system.
Probab=99.48 E-value=1e-13 Score=109.78 Aligned_cols=72 Identities=21% Similarity=0.234 Sum_probs=66.3
Q ss_pred eEEEEEe-CCEEEEEEEcCCCCHHHHHHHHhcccCCCccCcEE--eccCcccCCchhhhhcCCCCCCEEEEeecC
Q 018493 56 IRVRVKY-GSIYHEIHINSQATFGELKKLLTGPTGLHHEDQKL--IYKDKERDSKAFLDVVGVKDKSKLVLVEDP 127 (355)
Q Consensus 56 I~V~VK~-gg~~~~V~V~~~sTVgdLK~~I~e~TGVppe~QKL--IykGK~ldD~~tLs~~GIKdgSkImLv~~p 127 (355)
|.|+|+. .|..+.++|++++||++||++|++.+|+++++||| +|+|+.++|+.+|++|||++|++|+|+..+
T Consensus 3 ~~i~Vk~~~G~~~~~~v~~~~TV~~lK~~I~~~~~i~~~~qrL~~~~~G~~L~D~~tL~~~gi~~gs~l~l~~~~ 77 (80)
T cd01792 3 WDLKVKMLGGNEFLVSLRDSMTVSELKQQIAQKIGVPAFQQRLAHLDSREVLQDGVPLVSQGLGPGSTVLLVVQN 77 (80)
T ss_pred eEEEEEeCCCCEEEEEcCCCCcHHHHHHHHHHHhCCCHHHEEEEeccCCCCCCCCCCHHHcCCCCCCEEEEEEEc
Confidence 6777886 56788899999999999999999999999999999 999999999999999999999999998753
No 22
>cd01800 SF3a120_C Ubiquitin-like domain of Mammalian splicing factor SF3a_120. SF3a120_C Mammalian splicing factor SF3a consists of three subunits of 60, 66, and 120 kDa and functions early during pre-mRNA splicing by converting the U2 snRNP to its active form. The 120kDa subunit (SF3a120) has a carboxy-terminal ubiquitin-like domain and two SWAP (suppressor-of-white-apricot) domains, referred to collectively as the SURP module, at its amino-terminus.
Probab=99.47 E-value=6.5e-14 Score=109.95 Aligned_cols=66 Identities=17% Similarity=0.140 Sum_probs=62.3
Q ss_pred EeCCEEEEEEEcCCCCHHHHHHHHhcccCCCccCcEEeccCcccCCchhhhhcCCCCCCEEEEeec
Q 018493 61 KYGSIYHEIHINSQATFGELKKLLTGPTGLHHEDQKLIYKDKERDSKAFLDVVGVKDKSKLVLVED 126 (355)
Q Consensus 61 K~gg~~~~V~V~~~sTVgdLK~~I~e~TGVppe~QKLIykGK~ldD~~tLs~~GIKdgSkImLv~~ 126 (355)
+-++++++++|++++||++||++|+..+|+|+++|+|+|+|+.++|+.+|++|||++|++|+|+..
T Consensus 4 ~l~g~~~~l~v~~~~TV~~lK~~i~~~~gip~~~q~L~~~G~~L~d~~tL~~~~i~~g~~l~v~~~ 69 (76)
T cd01800 4 KLNGQMLNFTLQLSDPVSVLKVKIHEETGMPAGKQKLQYEGIFIKDSNSLAYYNLANGTIIHLQLK 69 (76)
T ss_pred ccCCeEEEEEECCCCcHHHHHHHHHHHHCCCHHHEEEEECCEEcCCCCcHHHcCCCCCCEEEEEEe
Confidence 347889999999999999999999999999999999999999999999999999999999999864
No 23
>cd01803 Ubiquitin Ubiquitin. Ubiquitin (includes Ubq/RPL40e and Ubq/RPS27a fusions as well as homopolymeric multiubiquitin protein chains)
Probab=99.47 E-value=1.1e-13 Score=106.61 Aligned_cols=71 Identities=20% Similarity=0.303 Sum_probs=65.0
Q ss_pred eEEEEEe-CCEEEEEEEcCCCCHHHHHHHHhcccCCCccCcEEeccCcccCCchhhhhcCCCCCCEEEEeec
Q 018493 56 IRVRVKY-GSIYHEIHINSQATFGELKKLLTGPTGLHHEDQKLIYKDKERDSKAFLDVVGVKDKSKLVLVED 126 (355)
Q Consensus 56 I~V~VK~-gg~~~~V~V~~~sTVgdLK~~I~e~TGVppe~QKLIykGK~ldD~~tLs~~GIKdgSkImLv~~ 126 (355)
+.|.|+. +|..+.++|++++||++||++|++.+|+|+++|+|+|+|+.++|+.+|++|||++|++|+|+..
T Consensus 1 m~i~v~~~~g~~~~~~v~~~~tV~~lK~~i~~~~g~~~~~q~L~~~g~~L~d~~~L~~~~i~~~~~i~l~~~ 72 (76)
T cd01803 1 MQIFVKTLTGKTITLEVEPSDTIENVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYNIQKESTLHLVLR 72 (76)
T ss_pred CEEEEEcCCCCEEEEEECCcCcHHHHHHHHHHHhCCCHHHeEEEECCEECCCCCcHHHcCCCCCCEEEEEEE
Confidence 3567775 4678899999999999999999999999999999999999999999999999999999999853
No 24
>cd01802 AN1_N ubiquitin-like domain of AN1. AN1 (also known as ANUBL1 and RSD-7) is ubiquitin-like protein with a testis-specific expression in rats that has an N-terminal ubiquitin-like domain and a C-terminal zinc-binding domain. Unlike ubiquitin polyproteins and most ubiquitin fusion proteins, the N-terminal ubiquitin-like domain of An1 does not undergo proteolytic processing. The function of AN1 is unknown.
Probab=99.47 E-value=1.2e-13 Score=115.38 Aligned_cols=72 Identities=18% Similarity=0.253 Sum_probs=66.5
Q ss_pred CeeEEEEEe-CCEEEEEEEcCCCCHHHHHHHHhcccCCCccCcEEeccCcccCCchhhhhcCCCCCCEEEEee
Q 018493 54 PTIRVRVKY-GSIYHEIHINSQATFGELKKLLTGPTGLHHEDQKLIYKDKERDSKAFLDVVGVKDKSKLVLVE 125 (355)
Q Consensus 54 ~~I~V~VK~-gg~~~~V~V~~~sTVgdLK~~I~e~TGVppe~QKLIykGK~ldD~~tLs~~GIKdgSkImLv~ 125 (355)
+.+.|.|+. +|.++.++|++++||++||++|++..|+|+++|||+|.|+.++|+.+|++|||++|++|+|+.
T Consensus 26 ~~M~I~Vk~l~G~~~~leV~~~~TV~~lK~kI~~~~gip~~~QrLi~~Gk~L~D~~tL~dy~I~~~stL~l~~ 98 (103)
T cd01802 26 DTMELFIETLTGTCFELRVSPFETVISVKAKIQRLEGIPVAQQHLIWNNMELEDEYCLNDYNISEGCTLKLVL 98 (103)
T ss_pred CCEEEEEEcCCCCEEEEEeCCCCcHHHHHHHHHHHhCCChHHEEEEECCEECCCCCcHHHcCCCCCCEEEEEE
Confidence 457777775 567889999999999999999999999999999999999999999999999999999999975
No 25
>cd01790 Herp_N Homocysteine-responsive endoplasmic reticulum-resident ubiquitin-like domain protein. Herp (Homocysteine-responsive endoplasmic reticulum-resident ubiquitin-like domain protein) , is an integral membrane protein that is induced by the endoplasmic reticulum (ER) stress response pathway and is involved in improving the balance of folding capacity and protein loads in the ER. Herp has an N-terminal ubiquitin-like domain that is involved in Herp degradation, but is not necessary for its enhancement of amyloid beta-protein generation.
Probab=99.42 E-value=3.7e-13 Score=108.07 Aligned_cols=70 Identities=26% Similarity=0.228 Sum_probs=60.7
Q ss_pred eEEEEEe-CCEEEE--EEEcCCCCHHHHHHHHhcccC--CCccCcEEeccCcccCCchhhhhcC--CCCCCEEEEee
Q 018493 56 IRVRVKY-GSIYHE--IHINSQATFGELKKLLTGPTG--LHHEDQKLIYKDKERDSKAFLDVVG--VKDKSKLVLVE 125 (355)
Q Consensus 56 I~V~VK~-gg~~~~--V~V~~~sTVgdLK~~I~e~TG--Vppe~QKLIykGK~ldD~~tLs~~G--IKdgSkImLv~ 125 (355)
|+|+||. .+.+++ |++++++||++||++|++..+ .++++|||||+||.|+|+.+|++|+ +.+|.+||||-
T Consensus 2 i~l~IK~~~~~~~~~~ve~~~~~TV~~lK~~i~~~~~~~~~~~~QrLIy~GKiLkD~~tL~~~~~~~~~~~tiHLV~ 78 (79)
T cd01790 2 VTLLIKSPNQKYEDQTVSCFLNWTVGELKTHLSRVYPSKPLEQDQRLIYSGKLLPDHLKLRDVLRKQDEYHMVHLVC 78 (79)
T ss_pred eEEEEECCCCCeEEEEEecCCcChHHHHHHHHHHhcCCCCChhHeEEEEcCeeccchhhHHHHhhcccCCceEEEEe
Confidence 7888997 456644 555899999999999999874 4579999999999999999999997 99999999983
No 26
>smart00213 UBQ Ubiquitin homologues. Ubiquitin-mediated proteolysis is involved in the regulated turnover of proteins required for controlling cell cycle progression
Probab=99.41 E-value=3.6e-13 Score=99.48 Aligned_cols=64 Identities=30% Similarity=0.350 Sum_probs=59.8
Q ss_pred eEEEEEeCCEEEEEEEcCCCCHHHHHHHHhcccCCCccCcEEeccCcccCCchhhhhcCCCCCC
Q 018493 56 IRVRVKYGSIYHEIHINSQATFGELKKLLTGPTGLHHEDQKLIYKDKERDSKAFLDVVGVKDKS 119 (355)
Q Consensus 56 I~V~VK~gg~~~~V~V~~~sTVgdLK~~I~e~TGVppe~QKLIykGK~ldD~~tLs~~GIKdgS 119 (355)
|.|+|++.+..+.++|++++||++||++|+..+|+|+++|+|+|+|+.++|+.+|++|||++|+
T Consensus 1 ~~i~vk~~~~~~~~~v~~~~tv~~lk~~i~~~~~~~~~~~~L~~~g~~L~d~~tL~~~~i~~~~ 64 (64)
T smart00213 1 IELTVKTLDGTITLEVKPSDTVSELKEKIAELTGIPVEQQRLIYKGKVLEDDRTLADYNIQDGS 64 (64)
T ss_pred CEEEEEECCceEEEEECCCCcHHHHHHHHHHHHCCCHHHEEEEECCEECCCCCCHHHcCCcCCC
Confidence 4688888667889999999999999999999999999999999999999999999999999986
No 27
>cd01815 BMSC_UbP_N Ubiquitin-like domain of BMSC-UbP. BMSC_UbP (bone marrow stromal cell-derived ubiquitin-like protein) has an N-terminal ubiquitin-like (UBQ) domain and a C-terminal ubiquitin-associated (UBA) domain, a domain architecture similar to those of the UBIN, Chap1, and ubiquilin proteins. This CD represents the N-terminal ubiquitin-like domain.
Probab=99.34 E-value=1e-12 Score=104.65 Aligned_cols=54 Identities=20% Similarity=0.264 Sum_probs=49.8
Q ss_pred cCCCCHHHHHHHHhccc--CCC-ccCcEEeccCcccCCchhhhhcCCCCCCEEEEee
Q 018493 72 NSQATFGELKKLLTGPT--GLH-HEDQKLIYKDKERDSKAFLDVVGVKDKSKLVLVE 125 (355)
Q Consensus 72 ~~~sTVgdLK~~I~e~T--GVp-pe~QKLIykGK~ldD~~tLs~~GIKdgSkImLv~ 125 (355)
+.++||++||++|++.+ |++ +++|||||+||.++|+.+|++|||++|++|+|+.
T Consensus 18 ~~~~TV~~LK~kI~~~~~egi~~~dqQrLIy~GKiL~D~~TL~dygI~~gstlhLv~ 74 (75)
T cd01815 18 PGGYQVSTLKQLIAAQLPDSLPDPELIDLIHCGRKLKDDQTLDFYGIQSGSTIHILR 74 (75)
T ss_pred CccCcHHHHHHHHHHhhccCCCChHHeEEEeCCcCCCCCCcHHHcCCCCCCEEEEEe
Confidence 45689999999999996 475 9999999999999999999999999999999986
No 28
>KOG0010 consensus Ubiquitin-like protein [Posttranslational modification, protein turnover, chaperones; General function prediction only]
Probab=99.31 E-value=2.6e-12 Score=131.22 Aligned_cols=73 Identities=26% Similarity=0.317 Sum_probs=70.3
Q ss_pred CeeEEEEEeCCEEEEEEEcCCCCHHHHHHHHhcccCCCccCcEEeccCcccCCchhhhhcCCCCCCEEEEeec
Q 018493 54 PTIRVRVKYGSIYHEIHINSQATFGELKKLLTGPTGLHHEDQKLIYKDKERDSKAFLDVVGVKDKSKLVLVED 126 (355)
Q Consensus 54 ~~I~V~VK~gg~~~~V~V~~~sTVgdLK~~I~e~TGVppe~QKLIykGK~ldD~~tLs~~GIKdgSkImLv~~ 126 (355)
..|+|+||+...+|+|.|+.++||.+||+.|+..+++++++++|||.||+|+|+.+|..|||+||.+||||.+
T Consensus 14 ~~irV~Vkt~~dk~~~~V~~~ssV~qlKE~I~~~f~a~~dqlvLIfaGrILKD~dTL~~~gI~Dg~TvHLVik 86 (493)
T KOG0010|consen 14 SLIRVTVKTPKDKYEVNVASDSSVLQLKELIAQRFGAPPDQLVLIYAGRILKDDDTLKQYGIQDGHTVHLVIK 86 (493)
T ss_pred ceeEEEEecCCcceeEecccchHHHHHHHHHHHhcCCChhHeeeeecCccccChhhHHHcCCCCCcEEEEEec
Confidence 4699999998889999999999999999999999999999999999999999999999999999999999965
No 29
>TIGR00601 rad23 UV excision repair protein Rad23. All proteins in this family for which functions are known are components of a multiprotein complex used for targeting nucleotide excision repair to specific parts of the genome. In humans, Rad23 complexes with the XPC protein. This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University).
Probab=99.28 E-value=6.3e-12 Score=126.24 Aligned_cols=71 Identities=23% Similarity=0.294 Sum_probs=65.5
Q ss_pred eEEEEEe-CCEEEEEEEcCCCCHHHHHHHHhcccC---CCccCcEEeccCcccCCchhhhhcCCCCCCEEEEeec
Q 018493 56 IRVRVKY-GSIYHEIHINSQATFGELKKLLTGPTG---LHHEDQKLIYKDKERDSKAFLDVVGVKDKSKLVLVED 126 (355)
Q Consensus 56 I~V~VK~-gg~~~~V~V~~~sTVgdLK~~I~e~TG---Vppe~QKLIykGK~ldD~~tLs~~GIKdgSkImLv~~ 126 (355)
|+|+||. .+++|.|+|++++||.+||++|+..+| +++++|||||+||+|+|+.+|++|||++|++|+||..
T Consensus 1 MkItVKtl~g~~~~IeV~~~~TV~dLK~kI~~~~g~~~ip~~~QkLIy~GkiL~Dd~tL~dy~I~e~~~Ivvmv~ 75 (378)
T TIGR00601 1 MTLTFKTLQQQKFKIDMEPDETVKELKEKIEAEQGKDAYPVAQQKLIYSGKILSDDKTVREYKIKEKDFVVVMVS 75 (378)
T ss_pred CEEEEEeCCCCEEEEEeCCcChHHHHHHHHHHhhCCCCCChhHeEEEECCEECCCCCcHHHcCCCCCCEEEEEec
Confidence 4677775 567899999999999999999999999 9999999999999999999999999999999998854
No 30
>cd01769 UBL Ubiquitin-like domain of UBL. UBLs function by remodeling the surface of their target proteins, changing their target's half-life, enzymatic activity, protein-protein interactions, subcellular localization or other properties. At least 10 different ubiquitin-like modifications exist in mammals, and attachment of different ubls to a target leads to different biological consequences. Ubl-conjugation cascades are initiated by activating enzymes, which also coordinate the ubls with their downstream pathways.
Probab=99.26 E-value=1.2e-11 Score=92.42 Aligned_cols=66 Identities=32% Similarity=0.402 Sum_probs=60.9
Q ss_pred EEe-CCEEEEEEEcCCCCHHHHHHHHhcccCCCccCcEEeccCcccCCchhhhhcCCCCCCEEEEee
Q 018493 60 VKY-GSIYHEIHINSQATFGELKKLLTGPTGLHHEDQKLIYKDKERDSKAFLDVVGVKDKSKLVLVE 125 (355)
Q Consensus 60 VK~-gg~~~~V~V~~~sTVgdLK~~I~e~TGVppe~QKLIykGK~ldD~~tLs~~GIKdgSkImLv~ 125 (355)
|++ .+..+.+.+++++||++||++|+..+|+++++|+|+|+|+.++|+.+|.+|||++|+.|+++.
T Consensus 2 v~~~~~~~~~~~~~~~~ti~~lK~~i~~~~~~~~~~~~l~~~g~~l~d~~~l~~~~v~~~~~i~v~~ 68 (69)
T cd01769 2 VKTLTGKTFELEVSPDDTVAELKAKIAAKEGVPPEQQRLIYAGKILKDDKTLSDYGIQDGSTLHLVL 68 (69)
T ss_pred eEccCCCEEEEEECCCChHHHHHHHHHHHHCcChHHEEEEECCcCCCCcCCHHHCCCCCCCEEEEEE
Confidence 444 367788999999999999999999999999999999999999999999999999999999975
No 31
>cd01799 Hoil1_N Ubiquitin-like domain of HOIL1. HOIL1_N HOIL-1 (heme-oxidized IRP2 ubiquitin ligase-1) is an E3 ubiquitin-protein ligase that recognizes heme-oxidized IRP2 (iron regulatory protein2) and is thought to affect the turnover of oxidatively damaged proteins. Hoil-1 has an amino-terminal ubiquitin-like domain as well as an RBR signature consisting of two RING finger domains separated by an IBR/DRIL domain.
Probab=99.23 E-value=2e-11 Score=96.61 Aligned_cols=61 Identities=13% Similarity=0.126 Sum_probs=55.5
Q ss_pred CCEEEEEEEcCCCCHHHHHHHHhcccCCCccCcEEeccCccc-CCchhhhhcCCC-CCCEEEEe
Q 018493 63 GSIYHEIHINSQATFGELKKLLTGPTGLHHEDQKLIYKDKER-DSKAFLDVVGVK-DKSKLVLV 124 (355)
Q Consensus 63 gg~~~~V~V~~~sTVgdLK~~I~e~TGVppe~QKLIykGK~l-dD~~tLs~~GIK-dgSkImLv 124 (355)
++.++.+.|++++||++||.+|++.+|+|+++|+| |.|+.+ +|+.+|++|||+ +|++|+|.
T Consensus 11 ~~~t~~l~v~~~~TV~~lK~kI~~~~gip~~~QrL-~~G~~L~dD~~tL~~ygi~~~g~~~~l~ 73 (75)
T cd01799 11 HTVTIWLTVRPDMTVAQLKDKVFLDYGFPPAVQRW-VIGQRLARDQETLYSHGIRTNGDSAFLY 73 (75)
T ss_pred CCCeEEEEECCCCcHHHHHHHHHHHHCcCHHHEEE-EcCCeeCCCcCCHHHcCCCCCCCEEEEE
Confidence 34567799999999999999999999999999999 999997 577999999999 88999984
No 32
>cd01763 Sumo Small ubiquitin-related modifier (SUMO). Small ubiquitin-related modifier (SUMO) proteins are conjugated to numerous intracellular targets and serve to modulate protein interaction, localization, activity or stability. SUMO (also known as "Smt3" and "sentrin" in other organisms) is linked to several different pathways, including nucleocytoplasmic transport. Attachment of SUMO to targets proteins is stimulated by PIAS (Protein inhibitor of activated STATs) proteins which serve as E3-like ligases.
Probab=99.14 E-value=2e-10 Score=92.70 Aligned_cols=74 Identities=14% Similarity=0.198 Sum_probs=68.4
Q ss_pred CCCeeEEEEEeC-CEEEEEEEcCCCCHHHHHHHHhcccCCCccCcEEeccCcccCCchhhhhcCCCCCCEEEEee
Q 018493 52 PPPTIRVRVKYG-SIYHEIHINSQATFGELKKLLTGPTGLHHEDQKLIYKDKERDSKAFLDVVGVKDKSKLVLVE 125 (355)
Q Consensus 52 ~~~~I~V~VK~g-g~~~~V~V~~~sTVgdLK~~I~e~TGVppe~QKLIykGK~ldD~~tLs~~GIKdgSkImLv~ 125 (355)
....|+|.|+.- +..+.+.|.+++|+..||.++++..|+++++|+|+|.|+.++++.++.+||+.+|++|.++.
T Consensus 8 ~~~~i~I~v~~~~g~~~~~~v~~~~~l~~l~~~y~~~~gi~~~~~rf~f~G~~L~~~~T~~~l~m~d~d~I~v~l 82 (87)
T cd01763 8 ISEHINLKVKGQDGNEVFFKIKRSTPLKKLMEAYCQRQGLSMNSVRFLFDGQRIRDNQTPDDLGMEDGDEIEVML 82 (87)
T ss_pred CCCeEEEEEECCCCCEEEEEEcCCCHHHHHHHHHHHHhCCCccceEEEECCeECCCCCCHHHcCCCCCCEEEEEE
Confidence 456789999864 67788999999999999999999999999999999999999999999999999999999874
No 33
>KOG0005 consensus Ubiquitin-like protein [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones]
Probab=99.07 E-value=1.5e-10 Score=88.74 Aligned_cols=68 Identities=24% Similarity=0.283 Sum_probs=62.8
Q ss_pred EEEEEe-CCEEEEEEEcCCCCHHHHHHHHhcccCCCccCcEEeccCcccCCchhhhhcCCCCCCEEEEe
Q 018493 57 RVRVKY-GSIYHEIHINSQATFGELKKLLTGPTGLHHEDQKLIYKDKERDSKAFLDVVGVKDKSKLVLV 124 (355)
Q Consensus 57 ~V~VK~-gg~~~~V~V~~~sTVgdLK~~I~e~TGVppe~QKLIykGK~ldD~~tLs~~GIKdgSkImLv 124 (355)
.|+|++ .++.++|++++.++|..+|..|+++.||||.+|+|||.||.+.|+.+-..|++.-||.|+++
T Consensus 2 ~iKvktLt~KeIeidIep~DkverIKErvEEkeGIPp~qqrli~~gkqm~DD~tA~~Y~~~~GSVlHlv 70 (70)
T KOG0005|consen 2 LIKVKTLTGKEIEIDIEPTDKVERIKERVEEKEGIPPQQQRLIYAGKQMNDDKTAAHYNLLGGSVLHLV 70 (70)
T ss_pred eeeEeeeccceEEEeeCcchHHHHHHHHhhhhcCCCchhhhhhhccccccccccHHHhhhccceeEeeC
Confidence 466665 45778999999999999999999999999999999999999999999999999999999985
No 34
>cd01789 Alp11_N Ubiquitin-like domain of Alp11 tubulin-folding cofactor B. Alp11, also known as tubulin-folding cofactor B, is one of at least three proteins required for the proper folding of tubulins prior to their incorporation into microtubules. These cofactors are necessary for the biogenesis of microtubules and for cell viability. Alp11 has three domains including an N-terminal ubiquitin-like domain (represented by this CD) which executes the essential function, a central coiled-coil domain necessary for maintenance of cellular alpha-tubulin levels, and a C-terminal CLIP-170 domain is required for efficient binding to alpha-tubulin.
Probab=99.06 E-value=5.2e-10 Score=89.99 Aligned_cols=70 Identities=23% Similarity=0.335 Sum_probs=59.5
Q ss_pred eEEEEEeC--CEEEEEEEcCCCCHHHHHHHHhcccCCCccCcEE-eccCc-----cc-CCchhhhhcCCCCCCEEEEee
Q 018493 56 IRVRVKYG--SIYHEIHINSQATFGELKKLLTGPTGLHHEDQKL-IYKDK-----ER-DSKAFLDVVGVKDKSKLVLVE 125 (355)
Q Consensus 56 I~V~VK~g--g~~~~V~V~~~sTVgdLK~~I~e~TGVppe~QKL-IykGK-----~l-dD~~tLs~~GIKdgSkImLv~ 125 (355)
|+|.|++. ....+..++++.||++||++|+..+|++|..|+| +|.|+ .+ +|+.+|..||+++|++|+|+.
T Consensus 2 v~v~i~~~~~~~~~ekr~~~~~Tv~~lK~kl~~~~G~~~~~mrL~l~~~~~~~~~~l~~d~~~L~~y~~~dg~~IhVvD 80 (84)
T cd01789 2 VTVNITSSADSFSFEKKYSRGLTIAELKKKLELVVGTPASSMRLQLFDGDDKLVSKLDDDDALLGSYPVDDGCRIHVID 80 (84)
T ss_pred EEEEEEeCCCceeeeEecCCCCcHHHHHHHHHHHHCCCccceEEEEEcCCCCeEeecCCCccEeeeccCCCCCEEEEEe
Confidence 45666654 4445566999999999999999999999999999 58888 34 788899999999999999985
No 35
>KOG1872 consensus Ubiquitin-specific protease [Posttranslational modification, protein turnover, chaperones]
Probab=99.02 E-value=3.3e-10 Score=115.41 Aligned_cols=75 Identities=23% Similarity=0.267 Sum_probs=70.7
Q ss_pred CeeEEEEEeCCEEEEEE-EcCCCCHHHHHHHHhcccCCCccCcEEeccCcccCCchhhhhcCCCCCCEEEEeecCC
Q 018493 54 PTIRVRVKYGSIYHEIH-INSQATFGELKKLLTGPTGLHHEDQKLIYKDKERDSKAFLDVVGVKDKSKLVLVEDPI 128 (355)
Q Consensus 54 ~~I~V~VK~gg~~~~V~-V~~~sTVgdLK~~I~e~TGVppe~QKLIykGK~ldD~~tLs~~GIKdgSkImLv~~p~ 128 (355)
+...|.|||+|+.|++. ++.++|+..||++|...|||+|++||+++||+.+.|+-.+..++||+|.+|||||.+.
T Consensus 2 ~~~~v~VKW~gk~y~v~~l~~d~t~~vlKaqlf~LTgV~PeRQKv~vKGg~a~dd~~~~al~iKpn~~lmMmGt~e 77 (473)
T KOG1872|consen 2 PSDTVIVKWGGKKYPVETLSTDETPSVLKAQLFALTGVPPERQKVMVKGGLAKDDVDWGALQIKPNETLMMMGTAE 77 (473)
T ss_pred CcceEeeeecCccccceeccCCCchHHHHHHHHHhcCCCccceeEEEecccccccccccccccCCCCEEEeecccc
Confidence 45689999999999998 9999999999999999999999999999999999999899999999999999999644
No 36
>PF14560 Ubiquitin_2: Ubiquitin-like domain; PDB: 1WJN_A 2KJ6_A 2KJR_A 1V6E_A 1T0Y_A.
Probab=99.01 E-value=6.5e-10 Score=89.26 Aligned_cols=72 Identities=26% Similarity=0.364 Sum_probs=60.7
Q ss_pred eeEEEEEeCCE---EEEEEEcCCCCHHHHHHHHhcccCCCccCcEEecc----Ccc----cCCchhhhhcCCCCCCEEEE
Q 018493 55 TIRVRVKYGSI---YHEIHINSQATFGELKKLLTGPTGLHHEDQKLIYK----DKE----RDSKAFLDVVGVKDKSKLVL 123 (355)
Q Consensus 55 ~I~V~VK~gg~---~~~V~V~~~sTVgdLK~~I~e~TGVppe~QKLIyk----GK~----ldD~~tLs~~GIKdgSkImL 123 (355)
.|+|.|.+... .++..++.+.||++||.+|+..+|+|++.|+|.|. |.. .+|..+|..||+++|++|++
T Consensus 1 ~v~l~It~~~~~~~~~ekr~~~~~Tv~eLK~kl~~~~Gi~~~~m~L~l~~~~~~~~~~~~~dd~~~L~~y~~~dg~~i~V 80 (87)
T PF14560_consen 1 VVKLFITSSNSKQRSVEKRFPKSITVSELKQKLEKLTGIPPSDMRLQLKSDKDDSKIEELDDDDATLGSYGIKDGMRIHV 80 (87)
T ss_dssp EEEEEEEESSSSSSEEEEEEETTSBHHHHHHHHHHHHTS-TTTEEEEEE-TSSSSEEEESSGSSSBCCHHT-STTEEEEE
T ss_pred CEEEEEEeCCCCCeeEEEEcCCCCCHHHHHHHHHHHhCCCcccEEEEEEecCCCccccccCCCccEeecCCCCCCCEEEE
Confidence 47888998765 88999999999999999999999999999999877 111 46789999999999999999
Q ss_pred eec
Q 018493 124 VED 126 (355)
Q Consensus 124 v~~ 126 (355)
+..
T Consensus 81 ~D~ 83 (87)
T PF14560_consen 81 VDT 83 (87)
T ss_dssp EE-
T ss_pred EeC
Confidence 863
No 37
>cd01814 NTGP5 Ubiquitin-like NTGP5 and ATGP4. NTGP5 and ATGP4 are plant-specific isoprenylated GTP-binding proteins with a single fold that resembles ubiquitin. The function of these proteins is unknown.
Probab=99.01 E-value=2.8e-10 Score=96.92 Aligned_cols=78 Identities=18% Similarity=0.114 Sum_probs=64.4
Q ss_pred eEEEEEeCCEEEEEEEcCCCCHHHHHHHHh-----cccCCC--ccCcEEeccCcccCCchhhhhcC------CCCCCEEE
Q 018493 56 IRVRVKYGSIYHEIHINSQATFGELKKLLT-----GPTGLH--HEDQKLIYKDKERDSKAFLDVVG------VKDKSKLV 122 (355)
Q Consensus 56 I~V~VK~gg~~~~V~V~~~sTVgdLK~~I~-----e~TGVp--pe~QKLIykGK~ldD~~tLs~~G------IKdgSkIm 122 (355)
|+++...|...=+..+++++||++||++|+ ...|+| +++|||||.||+|+|+.+|++|+ +....++|
T Consensus 7 ~kfrl~dg~digp~~~~~sdTV~~lKekI~~~~p~~ke~~P~~~~~qKLIysGKiLeD~~TL~d~~~p~g~~~~~~~TmH 86 (113)
T cd01814 7 IKFRLYDGSDIGPKRYPAATTVDFLKERVVSQWPKDKEVGPKTVNEVKLISAGKILENSKTVGECRSPVGDIAGGVITMH 86 (113)
T ss_pred EEEEccCCCccCccccChhhHHHHHHHHHHHhcccccccCCCCHHHeEEEeCCeecCCCCcHHHhCCcccccCCCceEEE
Confidence 455555566666778899999999999999 555666 99999999999999999999999 77789999
Q ss_pred EeecCCchHHH
Q 018493 123 LVEDPISQEKR 133 (355)
Q Consensus 123 Lv~~p~s~E~~ 133 (355)
|+-.+...+.+
T Consensus 87 vvlr~~~~~~~ 97 (113)
T cd01814 87 VVVQPPLADKK 97 (113)
T ss_pred EEecCCCCCcc
Confidence 99876654443
No 38
>cd01795 USP48_C USP ubiquitin-specific protease. The USP (ubiquitin-specific protease) family is one of at least seven deubiquitylating enzyme (DUB) families capable of deconjugating ubiquitin and ubiquitin-like adducts. While the USP's have a conserved catalytic core domain, they differ in their domain architectures. This subfamily, which includes USP31, and USP48, has a carboxy-terminal ubiquitin-like domain in addition to a DUSP (domain of ubiquitin-specific proteases) domain,
Probab=98.99 E-value=6.3e-10 Score=93.10 Aligned_cols=60 Identities=27% Similarity=0.282 Sum_probs=55.4
Q ss_pred EEEEEcCCCCHHHHHHHHhcccCCCccCcEEeccCccc-CCchhhhhcCCCCCCEEEEeec
Q 018493 67 HEIHINSQATFGELKKLLTGPTGLHHEDQKLIYKDKER-DSKAFLDVVGVKDKSKLVLVED 126 (355)
Q Consensus 67 ~~V~V~~~sTVgdLK~~I~e~TGVppe~QKLIykGK~l-dD~~tLs~~GIKdgSkImLv~~ 126 (355)
..+.|++++||++||.+|.+.++|+|.+|||+|.|+.| ||..+|++|||-.||.|+|+.+
T Consensus 17 ~~L~V~~~~TVg~LK~lImQ~f~V~P~dQkL~~dG~~L~DDsrTLssyGv~sgSvl~Llid 77 (107)
T cd01795 17 KALLVSANQTLKELKIQIMHAFSVAPFDQNLSIDGKILSDDCATLGTLGVIPESVILLKAD 77 (107)
T ss_pred ceEEeCccccHHHHHHHHHHHhcCCcccceeeecCceeccCCccHHhcCCCCCCEEEEEec
Confidence 45679999999999999999999999999999999985 6789999999999999999863
No 39
>PF11976 Rad60-SLD: Ubiquitin-2 like Rad60 SUMO-like; InterPro: IPR022617 This entry includes small ubiquitin-related modifier (SUMO) proteins. SUMOs are small proteins that are covalently attached to lysines as post-translational modifications and are used to control multiple cellular process including signal transduction, nuclear transport and DNA replication and repair []. Unlike ubiquitin, they are not involved in protein degradation. This entry also contains the C-terminal Rad60 DNA repair protein SUMO-like domain.; PDB: 3RD2_A 2JXX_A 3RCZ_A 3GOE_A 3A4S_D 3A4R_B 2IO1_D 1U4A_A 2K1F_A 1WZ0_A ....
Probab=98.91 E-value=3.3e-09 Score=81.47 Aligned_cols=69 Identities=17% Similarity=0.331 Sum_probs=62.4
Q ss_pred eEEEEEe-CCEEEEEEEcCCCCHHHHHHHHhcccCCCc-cCcEEeccCcccCCchhhhhcCCCCCCEEEEe
Q 018493 56 IRVRVKY-GSIYHEIHINSQATFGELKKLLTGPTGLHH-EDQKLIYKDKERDSKAFLDVVGVKDKSKLVLV 124 (355)
Q Consensus 56 I~V~VK~-gg~~~~V~V~~~sTVgdLK~~I~e~TGVpp-e~QKLIykGK~ldD~~tLs~~GIKdgSkImLv 124 (355)
|+|+|+. ++..+.+.|.++++|+.|++.+++..|+++ +..+|+|.|+.++++.++.+||+++|+.|.++
T Consensus 1 I~i~v~~~~~~~~~~~v~~~~~~~~l~~~~~~~~~i~~~~~~~l~fdG~~L~~~~T~~~~~ied~d~Idv~ 71 (72)
T PF11976_consen 1 ITIKVRSQDGKEIKFKVKPTTTVSKLIEKYCEKKGIPPEESIRLIFDGKRLDPNDTPEDLGIEDGDTIDVI 71 (72)
T ss_dssp EEEEEEETTSEEEEEEEETTSCCHHHHHHHHHHHTTTT-TTEEEEETTEEE-TTSCHHHHT-STTEEEEEE
T ss_pred CEEEEEeCCCCEEEEEECCCCcHHHHHHHHHHhhCCCccceEEEEECCEEcCCCCCHHHCCCCCCCEEEEE
Confidence 6777776 467899999999999999999999999999 99999999999999999999999999999886
No 40
>KOG0011 consensus Nucleotide excision repair factor NEF2, RAD23 component [Replication, recombination and repair]
Probab=98.83 E-value=4.8e-09 Score=103.15 Aligned_cols=72 Identities=26% Similarity=0.329 Sum_probs=66.4
Q ss_pred eEEEEEe-CCEEEEEEEcCCCCHHHHHHHHhcccC--CCccCcEEeccCcccCCchhhhhcCCCCCCEEEEeecC
Q 018493 56 IRVRVKY-GSIYHEIHINSQATFGELKKLLTGPTG--LHHEDQKLIYKDKERDSKAFLDVVGVKDKSKLVLVEDP 127 (355)
Q Consensus 56 I~V~VK~-gg~~~~V~V~~~sTVgdLK~~I~e~TG--Vppe~QKLIykGK~ldD~~tLs~~GIKdgSkImLv~~p 127 (355)
++|+||+ .+.++.|++.++.||.+||+.|+...| +|...|||||.||.|.|+.+|.+|+|++++.|.||.++
T Consensus 1 m~lt~KtL~q~~F~iev~Pe~tV~evK~kIet~~g~dyP~~~QkLIy~GkiL~D~~tv~Eykv~E~~fiVvMlsK 75 (340)
T KOG0011|consen 1 MKLTVKTLKQQTFTIEVKPEDTVVEVKKKIETEKGPDYPAEQQKLIYSGKILKDETTVGEYKVKEKKFIVVMLSK 75 (340)
T ss_pred CeeEeeeccCceeEeecCcchhHHHHHHHHHhccCCCCchhhheeeecceeccCCcchhhhccccCceEEEEEec
Confidence 4678886 567889999999999999999999999 99999999999999999999999999999999888654
No 41
>KOG0003 consensus Ubiquitin/60s ribosomal protein L40 fusion [Translation, ribosomal structure and biogenesis]
Probab=98.78 E-value=2.2e-09 Score=90.91 Aligned_cols=66 Identities=18% Similarity=0.280 Sum_probs=61.7
Q ss_pred EEEeCCEEEEEEEcCCCCHHHHHHHHhcccCCCccCcEEeccCcccCCchhhhhcCCCCCCEEEEe
Q 018493 59 RVKYGSIYHEIHINSQATFGELKKLLTGPTGLHHEDQKLIYKDKERDSKAFLDVVGVKDKSKLVLV 124 (355)
Q Consensus 59 ~VK~gg~~~~V~V~~~sTVgdLK~~I~e~TGVppe~QKLIykGK~ldD~~tLs~~GIKdgSkImLv 124 (355)
-+..-|++..+++.+++||..||..|....||||+.|+|+|.||.++|..+|.+|||+.-|+|+++
T Consensus 5 ~~~~~GKT~~le~EpS~ti~~vKA~i~~~~Gi~~~~~~L~~~~k~LED~~Tla~Y~i~~~~Tl~~~ 70 (128)
T KOG0003|consen 5 VKTLTGKTITLEVEPSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQKESTLHLV 70 (128)
T ss_pred EEEeeCceEEEEecccchHHHHHHHhccccCCCHHHHHHHhcccccccCCcccccCccchhhhhhh
Confidence 344567888899999999999999999999999999999999999999999999999999999987
No 42
>KOG0004 consensus Ubiquitin/40S ribosomal protein S27a fusion [Translation, ribosomal structure and biogenesis]
Probab=98.75 E-value=5.9e-09 Score=93.04 Aligned_cols=67 Identities=21% Similarity=0.310 Sum_probs=60.6
Q ss_pred EEEEeC-CEEEEEEEcCCCCHHHHHHHHhcccCCCccCcEEeccCcccCCchhhhhcCCCCCCEEEEe
Q 018493 58 VRVKYG-SIYHEIHINSQATFGELKKLLTGPTGLHHEDQKLIYKDKERDSKAFLDVVGVKDKSKLVLV 124 (355)
Q Consensus 58 V~VK~g-g~~~~V~V~~~sTVgdLK~~I~e~TGVppe~QKLIykGK~ldD~~tLs~~GIKdgSkImLv 124 (355)
|.|++- +.+...++.+++|+..+|+.|+...|||+++|+|||.|+.|+|..+|++|+|+.-++|+|+
T Consensus 3 ifVk~l~~kti~~eve~~~ti~~~Kakiq~~egIp~dqqrlifag~qLedgrtlSDY~Iqkestl~l~ 70 (156)
T KOG0004|consen 3 IFVKTLTGKTITLEVEANDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYNIQKESTLHLV 70 (156)
T ss_pred cchhhccccceeeeecccccHHHHHHhhhcccCCCchhhhhhhhhcccccCCccccccccccceEEEE
Confidence 445542 3567788999999999999999999999999999999999999999999999999999998
No 43
>cd01801 Tsc13_N Ubiquitin-like domain of Tsc13. Tsc13_N N-terminal domain of Tsc13. Tsc13 is an enoyl reductase involved in elongation of long chain fatty acids that localizes to the endoplasmic reticulum and is highly enriched in a novel structure marking nuclear-vacuolar junctions.
Probab=98.48 E-value=2.5e-07 Score=72.86 Aligned_cols=52 Identities=29% Similarity=0.314 Sum_probs=47.2
Q ss_pred cCCCCHHHHHHHHhcccC-CCccCcEEe--ccCcccCCchhhhhcCCCCCCEEEE
Q 018493 72 NSQATFGELKKLLTGPTG-LHHEDQKLI--YKDKERDSKAFLDVVGVKDKSKLVL 123 (355)
Q Consensus 72 ~~~sTVgdLK~~I~e~TG-Vppe~QKLI--ykGK~ldD~~tLs~~GIKdgSkImL 123 (355)
++++||++||..|+...+ +++++|+|. |+|+.+.|+.+|.+|||++|++|++
T Consensus 20 ~~~aTV~dlk~~i~~~~~~~~~~Rqrl~~~~~g~~L~d~~tL~~~gv~~g~~lyv 74 (77)
T cd01801 20 SGDATIADLKKLIAKSSPQLTVNRQSLRLEPKGKSLKDDDTLVDLGVGAGATLYV 74 (77)
T ss_pred CCCccHHHHHHHHHHHcCCCCcceeEEEeCCCCcccCCcccHhhcCCCCCCEEEE
Confidence 678999999999999876 578999985 8999999999999999999999886
No 44
>KOG4248 consensus Ubiquitin-like protein, regulator of apoptosis [Posttranslational modification, protein turnover, chaperones]
Probab=98.42 E-value=2.5e-07 Score=101.50 Aligned_cols=72 Identities=28% Similarity=0.322 Sum_probs=66.7
Q ss_pred eEEEEEe-CCEEEEEEEcCCCCHHHHHHHHhcccCCCccCcEEeccCcccCCchhhhhcCCCCCCEEEEeecCC
Q 018493 56 IRVRVKY-GSIYHEIHINSQATFGELKKLLTGPTGLHHEDQKLIYKDKERDSKAFLDVVGVKDKSKLVLVEDPI 128 (355)
Q Consensus 56 I~V~VK~-gg~~~~V~V~~~sTVgdLK~~I~e~TGVppe~QKLIykGK~ldD~~tLs~~GIKdgSkImLv~~p~ 128 (355)
+.|+||+ ...++.+.|...+||.+||+.|...+.|+.+.|||||.|++|.|+.++.+||| ||-+|||++.+.
T Consensus 3 ~~v~vktld~r~~t~~ig~q~ti~~~~d~~r~~~ni~s~~qr~i~~grvl~~~k~vq~~~v-dgk~~hlverpp 75 (1143)
T KOG4248|consen 3 PNVLVKTLDSRTRTFIIGAQMTIKEFKDHIRASVNIPSEKQRLIYQGRVLQDDKKVQEYNV-DGKVIHLVERPP 75 (1143)
T ss_pred cceeeeecccceeEEEechHHHHHHHHHHHHHhcccccccceeeecceeeccchhhhhccC-CCeEEEeeccCC
Confidence 3488887 56889999999999999999999999999999999999999999999999999 999999997643
No 45
>PLN02560 enoyl-CoA reductase
Probab=98.39 E-value=6e-07 Score=88.35 Aligned_cols=57 Identities=23% Similarity=0.257 Sum_probs=51.4
Q ss_pred EEEEcCCCCHHHHHHHHhcccCC-CccCcEEecc---Cc----ccCCchhhhhcCCCCCCEEEEe
Q 018493 68 EIHINSQATFGELKKLLTGPTGL-HHEDQKLIYK---DK----ERDSKAFLDVVGVKDKSKLVLV 124 (355)
Q Consensus 68 ~V~V~~~sTVgdLK~~I~e~TGV-ppe~QKLIyk---GK----~ldD~~tLs~~GIKdgSkImLv 124 (355)
.|++++++||+|||+.|++..++ ++++|||+|. |+ .++|+.+|+++||++|++|++-
T Consensus 17 ~lev~~~aTV~dLK~~Isk~~~~~~~~RqRL~~~~~~gk~~g~~L~d~ktL~d~gv~~gstLy~k 81 (308)
T PLN02560 17 GLEVPDSATVADLKKAIHKRKKKYYPSRQRLTLPLPPGKTRPTVLDDSKSLKDYGLGDGGTVVFK 81 (308)
T ss_pred eEEcCCCCcHHHHHHHHHHHcCCCChhheEEEEecCCCCcCccccCCCCCHHhcCCCCCceEEEE
Confidence 78999999999999999999987 8999999982 43 6789999999999999998885
No 46
>PF13881 Rad60-SLD_2: Ubiquitin-2 like Rad60 SUMO-like; PDB: 1SE9_A 1WGH_A 2GOW_A.
Probab=98.37 E-value=1.2e-06 Score=74.49 Aligned_cols=73 Identities=18% Similarity=0.226 Sum_probs=52.6
Q ss_pred eEEEEE--eCCEEEEEEEcCCCCHHHHHHHHhccc-------CCCccCcEEeccCcccCCchhhhhcCCCCCC------E
Q 018493 56 IRVRVK--YGSIYHEIHINSQATFGELKKLLTGPT-------GLHHEDQKLIYKDKERDSKAFLDVVGVKDKS------K 120 (355)
Q Consensus 56 I~V~VK--~gg~~~~V~V~~~sTVgdLK~~I~e~T-------GVppe~QKLIykGK~ldD~~tLs~~GIKdgS------k 120 (355)
|.|++. .|..+.++.+++.+||++||+.|.... -..+...||||.||.|+|+.+|.+|++..|+ +
T Consensus 3 i~lkf~l~~G~d~~~~~~~~~~TV~~lKe~i~~~WP~d~~~~p~s~~~lRLI~~GriL~d~~tL~~~~~~~~~~~~~~~v 82 (111)
T PF13881_consen 3 IELKFRLADGKDIGPFRFDPSTTVADLKERIWAEWPEDWEERPKSPSDLRLIYAGRILEDNKTLSDCRLPSGETPGGPTV 82 (111)
T ss_dssp EEEEEEETTS-EEEEEEE-TTSBHHHHHHHHHHSSSTTSSSTT-SGGGEEEEETTEEE-SSSBTGGGT--TTSETT--EE
T ss_pred EEEEEEEeCCCcccccccCccChHHHHHHHHHHHCccccccCCCChhhEEEEeCCeecCCcCcHHHhCCCCCCCCCCCEE
Confidence 444444 344489999999999999999998542 2235789999999999999999999999887 4
Q ss_pred EEEeecCC
Q 018493 121 LVLVEDPI 128 (355)
Q Consensus 121 ImLv~~p~ 128 (355)
+||+..+.
T Consensus 83 mHlvvrp~ 90 (111)
T PF13881_consen 83 MHLVVRPN 90 (111)
T ss_dssp EEEEE-SS
T ss_pred EEEEecCC
Confidence 67776544
No 47
>cd00196 UBQ Ubiquitin-like proteins. Ubiquitin homologs; Includes ubiquitin and ubiquitin-like proteins. Ubiquitin-mediated proteolysis is part of the regulated turnover of proteins required for controlling cell cycle progression. Other family members are protein modifiers that perform a wide range of functions. Ubiquitination usually results in a covalent bond between the C-terminus of ubiquitin and the epsilon-amino group of a substrate lysine. The three-step mechanism requires an activating enzyme (E1) that forms a thiol ester with the C-terminal carboxy group, a conjugating enzyme (E2) that transiently carries the activated ubiquitin molecule as a thiol ester, and a ligase (E3) that transfers the activated ubiquitin from the E2 to the substrate lysine residue. In poly-ubiquitination, ubiquitin itself is the substrate.
Probab=98.35 E-value=1.2e-06 Score=60.40 Aligned_cols=63 Identities=30% Similarity=0.364 Sum_probs=57.8
Q ss_pred CCEEEEEEEcCCCCHHHHHHHHhcccCCCccCcEEeccCcccCCchhhhhcCCCCCCEEEEee
Q 018493 63 GSIYHEIHINSQATFGELKKLLTGPTGLHHEDQKLIYKDKERDSKAFLDVVGVKDKSKLVLVE 125 (355)
Q Consensus 63 gg~~~~V~V~~~sTVgdLK~~I~e~TGVppe~QKLIykGK~ldD~~tLs~~GIKdgSkImLv~ 125 (355)
++....+.+++..|+++|++.|.+.+|++++.++|++.|..+++...+..+++.+|+.|+++.
T Consensus 6 ~~~~~~~~~~~~~tv~~l~~~i~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~i~~~~ 68 (69)
T cd00196 6 DGKTVELLVPSGTTVADLKEKLAKKLGLPPEQQRLLVNGKILPDSLTLEDYGLQDGDELVLVP 68 (69)
T ss_pred CCCEEEEEcCCCCcHHHHHHHHHHHHCcChHHeEEEECCeECCCCCcHHHcCCCCCCEEEEEe
Confidence 456677888899999999999999999999999999999999988888999999999999874
No 48
>KOG0001 consensus Ubiquitin and ubiquitin-like proteins [Posttranslational modification, protein turnover, chaperones; General function prediction only]
Probab=98.28 E-value=3.9e-06 Score=61.55 Aligned_cols=65 Identities=18% Similarity=0.258 Sum_probs=60.1
Q ss_pred eCCEEEEEEEcCCCCHHHHHHHHhcccCCCccCcEEeccCcccCCchhhhhcCCCCCCEEEEeec
Q 018493 62 YGSIYHEIHINSQATFGELKKLLTGPTGLHHEDQKLIYKDKERDSKAFLDVVGVKDKSKLVLVED 126 (355)
Q Consensus 62 ~gg~~~~V~V~~~sTVgdLK~~I~e~TGVppe~QKLIykGK~ldD~~tLs~~GIKdgSkImLv~~ 126 (355)
.-++.+.+.+.+..+|..+|.+|+...|+++..|.|+|+|+.+.|..+|.+|+|..++.+.|...
T Consensus 7 ~~gk~~~~~~~~~~~i~~~k~~i~~~~~~~~~~q~~~~~~~~l~d~~~l~~~~i~~~~~~~l~~~ 71 (75)
T KOG0001|consen 7 LDGKTITLEVSPSDTIEVVKAKIRDKEGIPVDQQRLIFGGKPLEDGRTLADYNIQEGSTLHLVLS 71 (75)
T ss_pred cCCCEEEEEecCCCHHHHHHHHHHhhcCCCCeeEEEEECCEECcCCCcHHHhCCCCCCEEEEEEe
Confidence 45667788999999999999999999999999999999999999999999999999999998764
No 49
>cd01788 ElonginB Ubiquitin-like domain of Elongin B. Elongin B is part of an E3 ubiquitin ligase complex called VEC that activates ubiquitylation by the E2 ubiquitin-conjugating enzyme Ubc5. VEC is composed of von Hippel-Lindau tumor suppressor protein (pVHL), elongin C, cullin 2, NEDD8, and Rbx1. ElonginB binds elonginC to form the elonginBC complex which is a positive regulator of RNA polymerase II elongation factor Elongin A. The BC complex then binds VHL (von Hippel-Lindau) tumour suppressor protein to form a VCB ternary complex. Elongin B has a ubiquitin-llike domain.
Probab=98.27 E-value=2.4e-06 Score=73.22 Aligned_cols=70 Identities=20% Similarity=0.170 Sum_probs=61.4
Q ss_pred eEEEEEeCCEEEEEEEcCCCCHHHHHHHHhcccCCCccCcEEeccCcccCCchhhhhcCC-------CCCCEEEEee
Q 018493 56 IRVRVKYGSIYHEIHINSQATFGELKKLLTGPTGLHHEDQKLIYKDKERDSKAFLDVVGV-------KDKSKLVLVE 125 (355)
Q Consensus 56 I~V~VK~gg~~~~V~V~~~sTVgdLK~~I~e~TGVppe~QKLIykGK~ldD~~tLs~~GI-------KdgSkImLv~ 125 (355)
+.|.|+....+|-++..++.||-+||++|+..+.+||+.|+|+-.+-.++|+.+|++||+ ..-+.|-|.-
T Consensus 3 vFlmIrR~KTTiF~dakes~tVlelK~~iegI~k~pp~dQrL~kd~qvLeD~kTL~d~g~t~~~akaq~pA~vgLa~ 79 (119)
T cd01788 3 VFLMIRRHKTTIFTDAKESTTVYELKRIVEGILKRPPEDQRLYKDDQLLDDGKTLGDCGFTSQTARPQAPATVGLAF 79 (119)
T ss_pred eEEEEEecceEEEeecCCcccHHHHHHHHHHHhcCChhHheeecCceeecccccHHHcCccccccccCCCCeEEEEE
Confidence 678888888889999999999999999999999999999999933345999999999999 6677877764
No 50
>PF11543 UN_NPL4: Nuclear pore localisation protein NPL4; InterPro: IPR024682 Npl4, along with Ufd1, forms the heterodimer adaptor complex UN, which is involved in the recruitment of p97, an AAA ATPase, for tasks involving the ubiquitin pathway. Npl4 has a N-terminal ubiquitin-like domain which has within its structure a beta-grasp fold with a helical insert []. This entry represents the ubiquitin-like domain.; PDB: 2PJH_A 1WF9_A.
Probab=98.19 E-value=3.7e-06 Score=67.61 Aligned_cols=70 Identities=21% Similarity=0.319 Sum_probs=41.8
Q ss_pred eeEEEEEeCCEEEEEEEcCCCCHHHHHHHHhcccCCCccCcEEec--cCc-cc--CCchhhhhcCCCCCCEEEEe
Q 018493 55 TIRVRVKYGSIYHEIHINSQATFGELKKLLTGPTGLHHEDQKLIY--KDK-ER--DSKAFLDVVGVKDKSKLVLV 124 (355)
Q Consensus 55 ~I~V~VK~gg~~~~V~V~~~sTVgdLK~~I~e~TGVppe~QKLIy--kGK-~l--dD~~tLs~~GIKdgSkImLv 124 (355)
.|.|+|......+-|++++++|+++|+++|.+.++++...|.|.. .++ .+ .++.+|+++||+.||-|+|-
T Consensus 4 ~milRvrS~dG~~Rie~~~~~t~~~L~~kI~~~l~~~~~~~~L~~~~~~~~~l~s~~~~tl~~lglkHGdmlyL~ 78 (80)
T PF11543_consen 4 SMILRVRSKDGMKRIEVSPSSTLSDLKEKISEQLSIPDSSQSLSKDRNNKEELKSSDSKTLSSLGLKHGDMLYLK 78 (80)
T ss_dssp --EEEEE-SSEEEEEEE-TTSBHHHHHHHHHHHS---TTT---BSSGGGGGCSSS-TT-CCCCT---TT-EEE--
T ss_pred cEEEEEECCCCCEEEEcCCcccHHHHHHHHHHHcCCCCcceEEEecCCCCcccccCCcCCHHHcCCCCccEEEEe
Confidence 455666665556778899999999999999999999999888752 121 23 57899999999999999873
No 51
>PF08817 YukD: WXG100 protein secretion system (Wss), protein YukD; InterPro: IPR014921 YukD is a bacterial protein that adopts a ubiquitin-like fold []. Ubiquitin covalently binds to protein and flags them for protein degradation, however conjugation assays have indicated that YukD lacks the capacity for covalent bond formation with other proteins []. ; PDB: 2BPS_B.
Probab=97.67 E-value=8.6e-05 Score=58.80 Aligned_cols=69 Identities=26% Similarity=0.280 Sum_probs=52.6
Q ss_pred eeEEEEEeCC-EEEEEEEcCCCCHHHHHHHHhcccCCCcc------CcEEe-ccCcccCCchhhhhcCCCCCCEEEE
Q 018493 55 TIRVRVKYGS-IYHEIHINSQATFGELKKLLTGPTGLHHE------DQKLI-YKDKERDSKAFLDVVGVKDKSKLVL 123 (355)
Q Consensus 55 ~I~V~VK~gg-~~~~V~V~~~sTVgdLK~~I~e~TGVppe------~QKLI-ykGK~ldD~~tLs~~GIKdgSkImL 123 (355)
.++|+|.++. ..+++.+|.+.+|++|...|.+..+.+.. .-+|. -+|..++++.+|.++||.||+.|+|
T Consensus 2 ~~rVtv~~~~~~~~Dl~lP~~vpv~~li~~l~~~~~~~~~~~~~~~~~~L~~~~g~~L~~~~tL~~~gV~dGd~L~L 78 (79)
T PF08817_consen 2 LCRVTVDAGNGRQVDLALPADVPVAELIPELVELLGLPGDDPPGHGQWVLARAGGRPLDPDQTLADAGVRDGDVLVL 78 (79)
T ss_dssp EEEEEEE-TT--EEEEEEETTSBTTHHHHHHHHHS---S---TT-E-EEEG-GGTEEEETTSBCGGGT--TT-EEEE
T ss_pred EEEEEEEcCCCcEEEEEcCCCCcHHHHHHHHHHHhCCccCCCCCcceEEEEecCCcccCCcCcHhHcCCCCCCEEEe
Confidence 4788999975 89999999999999999999998887543 24666 6788899999999999999999987
No 52
>PF11470 TUG-UBL1: GLUT4 regulating protein TUG; InterPro: IPR021569 TUG is a GLUT4 regulating protein and functions to retain membrane vesicles containing GLUT4 intracellularly. TUG releases the GLUT4 containing vesicles to the cellular exocytic machinery in response to insulin stimulation which allows translocation to the plasma membrane []. TUG has an N-terminal ubiquitin-like domain (UBL1) which in similar proteins appears to participate in protein-protein interactions []. The region does have a area of negative electrostatic potential and increased backbone motility which leads to suggestions of a potential protein-protein interaction site []. ; PDB: 2AL3_A.
Probab=97.26 E-value=0.0006 Score=53.13 Aligned_cols=64 Identities=16% Similarity=0.202 Sum_probs=48.4
Q ss_pred EEeCCEEEEEEEcCCCCHHHHHHHHhcccCCCccCcEEeccCcccCCchhhhhcCCCCCCEEEE
Q 018493 60 VKYGSIYHEIHINSQATFGELKKLLTGPTGLHHEDQKLIYKDKERDSKAFLDVVGVKDKSKLVL 123 (355)
Q Consensus 60 VK~gg~~~~V~V~~~sTVgdLK~~I~e~TGVppe~QKLIykGK~ldD~~tLs~~GIKdgSkImL 123 (355)
|.+++.++.|.+.+.+++.++-+..+.+.|+.+++-.|.|++|.+|-+.+++-.|+-+|++|-|
T Consensus 2 i~~~~rr~~vkvtp~~~l~~VL~eac~k~~l~~~~~~L~h~~k~ldlslp~R~snL~n~akLeL 65 (65)
T PF11470_consen 2 ICYNFRRFKVKVTPNTTLNQVLEEACKKFGLDPSSYDLKHNNKPLDLSLPFRLSNLPNNAKLEL 65 (65)
T ss_dssp E-TTS-EEEE---TTSBHHHHHHHHHHHTT--GGG-EEEETTEEESSS-BHHHH---SS-EEEE
T ss_pred CccCCcEEEEEECCCCCHHHHHHHHHHHcCCCccceEEEECCEEeccccceeecCCCCCCEEeC
Confidence 6678889999999999999999999999999999999999999999999999999999999865
No 53
>KOG0006 consensus E3 ubiquitin-protein ligase (Parkin protein) [Posttranslational modification, protein turnover, chaperones]
Probab=97.09 E-value=0.00056 Score=67.96 Aligned_cols=59 Identities=14% Similarity=0.285 Sum_probs=51.6
Q ss_pred EEEEEEcCCCCHHHHHHHHhcccCCCccCcEEeccCcccCCchhhhhcCCCCCCEEEEe
Q 018493 66 YHEIHINSQATFGELKKLLTGPTGLHHEDQKLIYKDKERDSKAFLDVVGVKDKSKLVLV 124 (355)
Q Consensus 66 ~~~V~V~~~sTVgdLK~~I~e~TGVppe~QKLIykGK~ldD~~tLs~~GIKdgSkImLv 124 (355)
..+|+|+.+..+.+||+.++..+|||+++.++||.||+|.++.++..+.+..-+.+++|
T Consensus 15 ~l~v~v~~~t~I~~lke~Vak~~gvp~D~L~viFaGKeLs~~ttv~~cDL~qqs~~hi~ 73 (446)
T KOG0006|consen 15 GLPVEVDSDTSIFQLKEVVAKRQGVPADQLRVIFAGKELSNDTTVQNCDLSQQSATHIM 73 (446)
T ss_pred ceeEEEecCCCHHHHHHHHHHhhCCChhheEEEEeccccccCceeecccccccchhhhh
Confidence 35677888899999999999999999999999999999999999997766666666555
No 54
>cd01811 OASL_repeat1 2'-5' oligoadenylate synthetase-like protein, repeat 1 of 2. OASL_repeat1 (2'-5' oligoadenylate synthetase-like protein) belongs to a family of interferon-induced 2'-5' oligoadenylate synthetases which are important for the antiviral activity of interferons. While each member of this famliy has a conserved N-terminal OAS catalytic domain, only OASL has two tandem ubiquitin-like repeats located at the C-terminus and this CD represents one of those repeats.
Probab=96.71 E-value=0.0055 Score=49.34 Aligned_cols=70 Identities=20% Similarity=0.286 Sum_probs=60.4
Q ss_pred eEEEEE-eCCEEEEEEEcCCCCHHHHHHHHhcccCCCccCcEEecc---Ccc--cCCchhhhhcCCCCCCEEEEeec
Q 018493 56 IRVRVK-YGSIYHEIHINSQATFGELKKLLTGPTGLHHEDQKLIYK---DKE--RDSKAFLDVVGVKDKSKLVLVED 126 (355)
Q Consensus 56 I~V~VK-~gg~~~~V~V~~~sTVgdLK~~I~e~TGVppe~QKLIyk---GK~--ldD~~tLs~~GIKdgSkImLv~~ 126 (355)
|.|+|+ ||.....+.|+|+.+|..||..|....|++= .|+|-|. |+. +.+..+|.+|||=.+-.|.|++.
T Consensus 1 iqVtV~q~g~~dl~l~vnPy~pI~k~K~kI~~~~~~~g-~qrLsfQepgg~rqlL~s~~sLA~yGiFs~~~i~lleT 76 (80)
T cd01811 1 IQVTVEQTGYSDWILRVNPYSPIRKIKEKIRRSRNCSG-LQRLSFQEPGGERQLLSSRKSLADYGIFSKTNICLLET 76 (80)
T ss_pred CEEEeeecCCCceEEEeCCcchHHHHHHHHHHhhCccc-ceEEEeecCCcccccccccccHhhhcceeccEEEEEec
Confidence 568888 6777788999999999999999999999985 8999984 443 78999999999998888888863
No 55
>PF10302 DUF2407: DUF2407 ubiquitin-like domain; InterPro: IPR019413 This entry represents a family of proteins of unknown function found in fungi. They contain a characteristic GFDRL sequence motif.
Probab=96.71 E-value=0.0025 Score=53.23 Aligned_cols=62 Identities=16% Similarity=0.117 Sum_probs=45.0
Q ss_pred eEEEEEeCCEEEEEEEc--CCCCHHHHHHHHhccc--CCCccCcEEeccCcccCCchhhhhcCCCC
Q 018493 56 IRVRVKYGSIYHEIHIN--SQATFGELKKLLTGPT--GLHHEDQKLIYKDKERDSKAFLDVVGVKD 117 (355)
Q Consensus 56 I~V~VK~gg~~~~V~V~--~~sTVgdLK~~I~e~T--GVppe~QKLIykGK~ldD~~tLs~~GIKd 117 (355)
|+|++..+---.+++|+ ...||.+||++|-+.. ...-.++||||.||.|.|...|...-..+
T Consensus 3 l~IRFs~sipDl~L~I~~~~~~Tv~~LK~lIR~~~p~~~s~~rLRlI~~Gr~L~d~t~l~~~l~~~ 68 (97)
T PF10302_consen 3 LTIRFSDSIPDLPLDIPSPNTTTVAWLKQLIRERLPPEPSRRRLRLIYAGRLLNDHTDLSSELKLP 68 (97)
T ss_pred EEEEECCCCCCceeecCCCCcccHHHHHHHHHhhcCCCCccccEEeeecCcccCccchhhhhhccc
Confidence 45555543222445555 7789999999999987 34446899999999999999887765444
No 56
>KOG4495 consensus RNA polymerase II transcription elongation factor Elongin/SIII, subunit elongin B [Transcription]
Probab=96.70 E-value=0.0026 Score=53.49 Aligned_cols=61 Identities=23% Similarity=0.162 Sum_probs=53.1
Q ss_pred eEEEEEeCCEEEEEEEcCCCCHHHHHHHHhcccCCCccCcEEeccCc--ccCCchhhhhcCCC
Q 018493 56 IRVRVKYGSIYHEIHINSQATFGELKKLLTGPTGLHHEDQKLIYKDK--ERDSKAFLDVVGVK 116 (355)
Q Consensus 56 I~V~VK~gg~~~~V~V~~~sTVgdLK~~I~e~TGVppe~QKLIykGK--~ldD~~tLs~~GIK 116 (355)
+.|.|+-...+|-++..++.||-+||.+|+..+.-|++.|+|+--.- .|+|..+|.++|..
T Consensus 3 ~f~~VrR~kttif~da~es~tV~elK~~l~gi~~~Pvn~qrL~kmd~eqlL~D~ktL~d~gft 65 (110)
T KOG4495|consen 3 VFLRVRRHKTTIFTDAKESSTVFELKRKLEGILKRPVNEQRLYKMDTEQLLDDGKTLGDCGFT 65 (110)
T ss_pred eeeeeeecceeEEeecCccccHHHHHHHHHHHHhCCCcchheeecCHHHHhhccchhhhcccc
Confidence 56788887788888999999999999999999999999999975343 49999999999764
No 57
>KOG3206 consensus Alpha-tubulin folding cofactor B [Posttranslational modification, protein turnover, chaperones]
Probab=96.47 E-value=0.0046 Score=58.30 Aligned_cols=74 Identities=20% Similarity=0.237 Sum_probs=60.4
Q ss_pred eeEEEEEeCCEE--EEEEEcCCCCHHHHHHHHhcccCCCccCcEEe-ccC------cccCCchhhhhcCCCCCCEEEEee
Q 018493 55 TIRVRVKYGSIY--HEIHINSQATFGELKKLLTGPTGLHHEDQKLI-YKD------KERDSKAFLDVVGVKDKSKLVLVE 125 (355)
Q Consensus 55 ~I~V~VK~gg~~--~~V~V~~~sTVgdLK~~I~e~TGVppe~QKLI-ykG------K~ldD~~tLs~~GIKdgSkImLv~ 125 (355)
+|+|.|.+.... .+..++.+.||.+||.+|+.+||.+++.++|- |+| ..-++++.|..|++.+|..||++.
T Consensus 1 ~v~v~Iss~~~~~~~Ekr~~~~ltl~q~K~KLe~~~G~~~~~M~l~l~~~~d~~~~~lsn~d~~lg~~~~~Dg~rihviD 80 (234)
T KOG3206|consen 1 MVRVVISSSLNDFRTEKRLSNSLTLAQFKDKLELLTGTEAESMELELYDGDDKKVSALSNEDADLGFYKVEDGLRIHVID 80 (234)
T ss_pred CeEEEEecccccchhhhhcCCcCcHHHHHhhhhhhhCCCccceEEEEEcCCCceeeeccCCcccccccCCCCceEEEEEe
Confidence 367777776544 45668899999999999999999999999984 666 124677899999999999999997
Q ss_pred cCC
Q 018493 126 DPI 128 (355)
Q Consensus 126 ~p~ 128 (355)
..+
T Consensus 81 ~~~ 83 (234)
T KOG3206|consen 81 SNA 83 (234)
T ss_pred cCc
Confidence 544
No 58
>KOG1769 consensus Ubiquitin-like proteins [Posttranslational modification, protein turnover, chaperones]
Probab=96.38 E-value=0.016 Score=48.77 Aligned_cols=73 Identities=14% Similarity=0.218 Sum_probs=66.7
Q ss_pred CCeeEEEEEe-CCEEEEEEEcCCCCHHHHHHHHhcccCCCccCcEEeccCcccCCchhhhhcCCCCCCEEEEee
Q 018493 53 PPTIRVRVKY-GSIYHEIHINSQATFGELKKLLTGPTGLHHEDQKLIYKDKERDSKAFLDVVGVKDKSKLVLVE 125 (355)
Q Consensus 53 ~~~I~V~VK~-gg~~~~V~V~~~sTVgdLK~~I~e~TGVppe~QKLIykGK~ldD~~tLs~~GIKdgSkImLv~ 125 (355)
...|+++|+- ++....+.|-.++.+.-|...-++..|++.+..+++|.|+.+.+..+=.+++..+|+.|-++.
T Consensus 18 ~~hi~LKV~gqd~~~~~Fkikr~t~LkKLM~aYc~r~Gl~~~s~RFlFdG~rI~~~~TP~~L~mEd~D~Iev~~ 91 (99)
T KOG1769|consen 18 SEHINLKVKGQDGSVVVFKIKRHTPLKKLMKAYCERQGLSMNSLRFLFDGQRIRETHTPADLEMEDGDEIEVVQ 91 (99)
T ss_pred cceEEEEEecCCCCEEEEEeecCChHHHHHHHHHHHcCCccceEEEEECCcCcCCCCChhhhCCcCCcEEEEEe
Confidence 4679999995 566678889999999999999999999999999999999999999999999999999998774
No 59
>KOG3493 consensus Ubiquitin-like protein [Posttranslational modification, protein turnover, chaperones]
Probab=96.29 E-value=0.0018 Score=50.79 Aligned_cols=60 Identities=25% Similarity=0.227 Sum_probs=49.3
Q ss_pred CEEEEEEEcCCCCHHHHHHHHhcccCCCccCcEEeccCcccCCchhhhhcCCCCCCEEEE
Q 018493 64 SIYHEIHINSQATFGELKKLLTGPTGLHHEDQKLIYKDKERDSKAFLDVVGVKDKSKLVL 123 (355)
Q Consensus 64 g~~~~V~V~~~sTVgdLK~~I~e~TGVppe~QKLIykGK~ldD~~tLs~~GIKdgSkImL 123 (355)
|++..|.-.+++||||||+.|+..||-.++...|=--+-..+|.-+|++|.|++|--+-|
T Consensus 11 GKKVRvKCn~dDtiGD~KKliaaQtGT~~~kivl~k~~~i~kd~I~L~dyeihdg~~lel 70 (73)
T KOG3493|consen 11 GKKVRVKCNTDDTIGDLKKLIAAQTGTRPEKIVLKKWYTIFKDHITLSDYEIHDGMNLEL 70 (73)
T ss_pred CceEEEEeCCcccccCHHHHHHHhhCCChhHhHHHhhhhhhhcccceeeEEeccCccEEE
Confidence 455666778999999999999999999999776653344588999999999999977654
No 60
>COG5417 Uncharacterized small protein [Function unknown]
Probab=96.25 E-value=0.012 Score=47.45 Aligned_cols=68 Identities=12% Similarity=0.099 Sum_probs=57.1
Q ss_pred EEEEE-eCCEEEEEEEcCCCCHHHHHHHHhcccCCCc-----cCcEEeccCcccCCchhhhhcCCCCCCEEEEe
Q 018493 57 RVRVK-YGSIYHEIHINSQATFGELKKLLTGPTGLHH-----EDQKLIYKDKERDSKAFLDVVGVKDKSKLVLV 124 (355)
Q Consensus 57 ~V~VK-~gg~~~~V~V~~~sTVgdLK~~I~e~TGVpp-----e~QKLIykGK~ldD~~tLs~~GIKdgSkImLv 124 (355)
+|-.+ |++.+|++.+|.+-++..|-..+.+...|.. ...|..-|++.+.++..|.+|||.+|+.|.++
T Consensus 8 TvD~t~y~g~~yDLrl~d~~pikklIdivwe~~kis~~~reg~~Ikv~nKa~llsgd~kL~d~~IadGD~LeiL 81 (81)
T COG5417 8 TVDFTNYNGGTYDLRLPDYLPIKKLIDIVWESLKISIFDREGTQIKVMNKAQLLSGDDKLIDYQIADGDILEIL 81 (81)
T ss_pred EEEeEecCCceEEEeccccchHHHHHHHHHHHhhccccccCCCEEEEeccceEecCCceEEeccccCCCEEEeC
Confidence 33334 5889999999999999999999988766653 35789999999999999999999999988653
No 61
>PF00789 UBX: UBX domain; InterPro: IPR001012 The UBX domain is found in ubiquitin-regulatory proteins, which are members of the ubiquitination pathway, as well as a number of other proteins including FAF-1 (FAS-associated factor 1), the human Rep-8 reproduction protein and several hypothetical proteins from yeast. The function of the UBX domain is not known although the fragment of avian FAF-1 containing the UBX domain causes apoptosis of transfected cells.; GO: 0005515 protein binding; PDB: 3QX1_A 1H8C_A 3QCA_B 3QQ8_B 3QC8_B 3R3M_A 3QWZ_B 1S3S_H 1JRU_A 1I42_A ....
Probab=95.91 E-value=0.035 Score=43.58 Aligned_cols=71 Identities=15% Similarity=0.261 Sum_probs=57.4
Q ss_pred CCeeEEEEEe-CCEEEEEEEcCCCCHHHHHHHHhcccCCCccC-cEEe--ccCcccCCc--hhhhhcCCCCCCEEEE
Q 018493 53 PPTIRVRVKY-GSIYHEIHINSQATFGELKKLLTGPTGLHHED-QKLI--YKDKERDSK--AFLDVVGVKDKSKLVL 123 (355)
Q Consensus 53 ~~~I~V~VK~-gg~~~~V~V~~~sTVgdLK~~I~e~TGVppe~-QKLI--ykGK~ldD~--~tLs~~GIKdgSkImL 123 (355)
...++|.|+. +|..+.-.+..++|+.+|.+-|......+... ..|+ |-.+.+.+. .+|.++|+.+++.|+|
T Consensus 4 ~~~~~I~vRlpdG~~l~~~F~~~~tl~~l~~~v~~~~~~~~~~~f~L~~~~Pr~~l~~~~~~tl~e~~l~p~~~l~v 80 (82)
T PF00789_consen 4 SDVVRIQVRLPDGSRLQRRFPKSDTLQDLYDFVESQLFSPEESDFELITAFPRRELTDEDSKTLEEAGLLPSATLIV 80 (82)
T ss_dssp SSEEEEEEEETTSTEEEEEEETTSBHHHHHHHHHHHHHCTTTSSEEEEESSSTEECCSTTTSBTCCCTTSSCEEEEE
T ss_pred CCEEEEEEECCCCCEEEEEECCcchHHHHHHHHHHhcCCCCCccEEEEeCCCCcCCCccccccHHHhcCCCCeEEEE
Confidence 4667888886 45678888999999999999999988887765 7776 565665433 6999999999999887
No 62
>smart00166 UBX Domain present in ubiquitin-regulatory proteins. Present in FAF1 and Shp1p.
Probab=95.88 E-value=0.065 Score=42.31 Aligned_cols=70 Identities=13% Similarity=0.118 Sum_probs=55.1
Q ss_pred CeeEEEEEe-CCEEEEEEEcCCCCHHHHHHHHhcccCCCccCcEEe--ccCcccCC---chhhhhcCCCCCCEEEE
Q 018493 54 PTIRVRVKY-GSIYHEIHINSQATFGELKKLLTGPTGLHHEDQKLI--YKDKERDS---KAFLDVVGVKDKSKLVL 123 (355)
Q Consensus 54 ~~I~V~VK~-gg~~~~V~V~~~sTVgdLK~~I~e~TGVppe~QKLI--ykGK~ldD---~~tLs~~GIKdgSkImL 123 (355)
+..+|.|+. +|.+....+++++|+.+|.+-|....+.......|+ |-.|.+.+ +.+|.++|+.+++.|+|
T Consensus 3 ~~~~I~iRlPdG~ri~~~F~~~~tl~~v~~~v~~~~~~~~~~f~L~t~~Prk~l~~~d~~~tL~e~gL~p~~~l~v 78 (80)
T smart00166 3 DQCRLQIRLPDGSRLVRRFPSSDTLRTVYEFVSAALTDGNDPFTLNSPFPRRTFTKDDYSKTLLELALLPSSTLVL 78 (80)
T ss_pred CeEEEEEEcCCCCEEEEEeCCCCcHHHHHHHHHHcccCCCCCEEEEeCCCCcCCccccccCCHHHCCCCCceEEEE
Confidence 456777774 567778889999999999999977777776777886 66666543 57999999998888876
No 63
>cd01767 UBX UBX (ubiquitin regulatory X) domain. The UBX (ubiquitin regulatory X) domain has a beta-grasp fold that is structurally quite similar to ubiquitin although UBX lacks the c-terminal double glycine motif and is thus unlikely to be conjugated to other proteins. Most UBX-containing proteins including p47, FAF1, and SAKS1 (Y33K) also contain a UBA (ubiquitin-associated) domain and are thought to serve as adaptor molecules that shuttle proteins to the proteasome for degradation.
Probab=95.49 E-value=0.12 Score=40.34 Aligned_cols=68 Identities=12% Similarity=0.192 Sum_probs=50.0
Q ss_pred eeEEEEEe-CCEEEEEEEcCCCCHHHHHHHHhcccCCCccCcEEe--ccCcccC---CchhhhhcCCCCCCEEEEe
Q 018493 55 TIRVRVKY-GSIYHEIHINSQATFGELKKLLTGPTGLHHEDQKLI--YKDKERD---SKAFLDVVGVKDKSKLVLV 124 (355)
Q Consensus 55 ~I~V~VK~-gg~~~~V~V~~~sTVgdLK~~I~e~TGVppe~QKLI--ykGK~ld---D~~tLs~~GIKdgSkImLv 124 (355)
..+|.|+. +|......++.++|+++|.+-|.....- .....|+ |-.+.+. ++.+|.++|+. ++.+++.
T Consensus 2 ~t~i~iRlpdG~~~~~~F~~~~tl~~l~~fv~~~~~~-~~~f~L~t~~Pr~~~~~~~~~~TL~e~gL~-~s~~~~~ 75 (77)
T cd01767 2 TTKIQIRLPDGKRLEQRFNSTHKLSDVRDFVESNGPP-AEPFTLMTSFPRRVLTDLDYELTLQEAGLV-NEVVFQR 75 (77)
T ss_pred cEEEEEEcCCCCEEEEEeCCCCCHHHHHHHHHHcCCC-CCCEEEEeCCCCccCCCCCccCcHHHcCCc-cceEEEE
Confidence 45566664 4566777899999999999999876543 5566776 5566653 58899999999 5666654
No 64
>KOG4361 consensus BCL2-associated athanogene-like proteins and related BAG family chaperone regulators [Signal transduction mechanisms]
Probab=95.45 E-value=0.0073 Score=60.73 Aligned_cols=51 Identities=33% Similarity=0.476 Sum_probs=40.3
Q ss_pred hhHHHHHHHHHh--CCCcchhhHhhHHHHHHHHHHhccCCCCChhhHHHHHHHHH
Q 018493 162 GQVSALESIITK--GGKVAEKDVLNLIELLMNQLLKLDGIMADGDVKLQRKMQVR 214 (355)
Q Consensus 162 ~ev~~LE~~I~~--g~Kv~eke~~~LsE~LMq~LLKLD~IeaeGdaR~qRK~~Vk 214 (355)
+++..+|..+.+ |++. ++.+.+|-|+|.+.||+||+|++. ++|..||..|+
T Consensus 292 ~~~~~~~~~v~sf~g~~~-~k~y~~~Ee~lt~~ll~ld~~d~~-~~~~ar~~~~~ 344 (344)
T KOG4361|consen 292 EKVLELEGAVESFEGPRT-DKSYAKLEEFLTKNLLALDSVDPQ-SVRRARKEAVR 344 (344)
T ss_pred hhhhhhhhhhhhcCCCcc-chhHHHHHHhcccccchhhccCcc-hhhhhhhhhcC
Confidence 344444444443 4444 999999999999999999999998 99999999874
No 65
>smart00666 PB1 PB1 domain. Phox and Bem1p domain, present in many eukaryotic cytoplasmic signalling proteins. The domain adopts a beta-grasp fold, similar to that found in ubiquitin and Ras-binding domains. A motif, variously termed OPR, PC and AID, represents the most conserved region of the majority of PB1 domains, and is necessary for PB1 domain function. This function is the formation of PB1 domain heterodimers, although not all PB1 domain pairs associate.
Probab=95.39 E-value=0.05 Score=42.42 Aligned_cols=47 Identities=23% Similarity=0.518 Sum_probs=42.5
Q ss_pred eeEEEEEeCCEEEEEEEcCCCCHHHHHHHHhcccCCCccCcEEeccC
Q 018493 55 TIRVRVKYGSIYHEIHINSQATFGELKKLLTGPTGLHHEDQKLIYKD 101 (355)
Q Consensus 55 ~I~V~VK~gg~~~~V~V~~~sTVgdLK~~I~e~TGVppe~QKLIykG 101 (355)
.++|+|.+++..+.+.++...|+.+|+.+|....++.....+|-|+.
T Consensus 1 ~~~vK~~~~~~~~~~~~~~~~s~~dL~~~i~~~~~~~~~~~~l~Y~D 47 (81)
T smart00666 1 TVDVKLRYGGETRRLSVPRDISFEDLRSKVAKRFGLDNQSFTLKYQD 47 (81)
T ss_pred CccEEEEECCEEEEEEECCCCCHHHHHHHHHHHhCCCCCCeEEEEEC
Confidence 36889999999999999999999999999999999988788888874
No 66
>PF15044 CLU_N: Mitochondrial function, CLU-N-term
Probab=95.04 E-value=0.081 Score=42.16 Aligned_cols=59 Identities=22% Similarity=0.320 Sum_probs=50.5
Q ss_pred EcCCCCHHHHHHHHhcccC-CCccCcEEeccCcccCCchhhhhc-CCCCCCEEEEeecCCc
Q 018493 71 INSQATFGELKKLLTGPTG-LHHEDQKLIYKDKERDSKAFLDVV-GVKDKSKLVLVEDPIS 129 (355)
Q Consensus 71 V~~~sTVgdLK~~I~e~TG-Vppe~QKLIykGK~ldD~~tLs~~-GIKdgSkImLv~~p~s 129 (355)
|.++++|.||++.|..... ..-....|.|+|+.++|...|+++ |+++|++|.|+.+|..
T Consensus 1 v~~~d~v~dvrq~L~~~~~t~~~Tn~~L~~~g~~L~~~~el~~i~~~~~~~~L~lve~pYt 61 (76)
T PF15044_consen 1 VSPTDTVQDVRQVLAESPETCYLTNFSLEHNGQRLDDFVELSEIEGIKDGCVLELVEEPYT 61 (76)
T ss_pred CChhhHHHHHHHHHHhCccccceeEEEEEECCCccCCchhhhhhhCCCCCcEEEEEecCCC
Confidence 4678899999999998755 445678899999999999998887 7999999999998874
No 67
>KOG0013 consensus Uncharacterized conserved protein [Function unknown]
Probab=94.31 E-value=0.033 Score=52.79 Aligned_cols=69 Identities=17% Similarity=0.253 Sum_probs=59.1
Q ss_pred eEEEEEeCCEEEEEEEcCCCCHHHHHHHHhcccCCCccCcEEeccCcccCCchhhhhcCCCCCCEEEEe
Q 018493 56 IRVRVKYGSIYHEIHINSQATFGELKKLLTGPTGLHHEDQKLIYKDKERDSKAFLDVVGVKDKSKLVLV 124 (355)
Q Consensus 56 I~V~VK~gg~~~~V~V~~~sTVgdLK~~I~e~TGVppe~QKLIykGK~ldD~~tLs~~GIKdgSkImLv 124 (355)
.++++..-++.+-+.++..+|++++|..+..+-|+.+-.|+++|.|+.+-|...|..|+|..|++-.|-
T Consensus 148 lk~rlTtT~~d~~lta~~~Dtv~eik~~L~Aaeg~D~~sQrif~Sg~~l~dkt~LeEc~iekg~rYvlq 216 (231)
T KOG0013|consen 148 LKLRLTTTREDFWLTAPHYDTVGEIKRALRAAEGVDPLSQRIFFSGGVLVDKTDLEECKIEKGQRYVLQ 216 (231)
T ss_pred hHHHhhhhhhheeecccCcCcHHHHHHHHHHhhccchhhheeeccCCceeccccceeeeecCCCEEEEE
Confidence 445555445666777888999999999999999999999999999999999999999999999765554
No 68
>PF00564 PB1: PB1 domain; InterPro: IPR000270 The Phox and Bem1p domain, is present in many eukaryotic cytoplasmic signalling proteins. The domain adopts a beta-grasp fold, similar to that found in ubiquitin and Ras-binding domains. A motif, variously termed OPR, PC and AID, represents the most conserved region of the majority of PB1 domains, and is necessary for PB1 domain function. This function is the formation of PB1 domain heterodimers, although not all PB1 domain pairs associate.; GO: 0005515 protein binding; PDB: 1IPG_A 1IP9_A 2KFK_A 1WMH_A 1VD2_A 1WI0_A 1OEY_C 1PQS_A 1Q1O_A 1TZ1_A ....
Probab=94.22 E-value=0.11 Score=40.50 Aligned_cols=47 Identities=38% Similarity=0.650 Sum_probs=42.9
Q ss_pred eeEEEEEeCCEEEE-EEEcCCCCHHHHHHHHhcccCCCccCcEEeccC
Q 018493 55 TIRVRVKYGSIYHE-IHINSQATFGELKKLLTGPTGLHHEDQKLIYKD 101 (355)
Q Consensus 55 ~I~V~VK~gg~~~~-V~V~~~sTVgdLK~~I~e~TGVppe~QKLIykG 101 (355)
+++|++.|++..+- +.++...++.+|+..|+...+++....+|-|..
T Consensus 1 t~~vK~~~~~~~~~~~~~~~~~s~~~L~~~i~~~~~~~~~~~~l~Y~D 48 (84)
T PF00564_consen 1 TVRVKVRYGGDIRRIISLPSDVSFDDLRSKIREKFGLLDEDFQLKYKD 48 (84)
T ss_dssp SEEEEEEETTEEEEEEEECSTSHHHHHHHHHHHHHTTSTSSEEEEEEE
T ss_pred CEEEEEEECCeeEEEEEcCCCCCHHHHHHHHHHHhCCCCccEEEEeeC
Confidence 47899999998888 999999999999999999999998888998875
No 69
>cd01770 p47_UBX p47-like ubiquitin domain. p47_UBX p47 is an adaptor molecule of the cytosolic AAA ATPase p97. The principal role of the p97-p47 complex is to regulate membrane fusion events. Mono-ubiquitin recognition by p47 is crucial for p97-p47-mediated Golgi membrane fusion events. p47 has carboxy-terminal SEP and UBX domains. The UBX domain has a beta-grasp fold similar to that of ubiquitin however, UBX lacks the c-terminal double glycine motif and is thus unlikely to be conjugated to other proteins.
Probab=93.70 E-value=0.45 Score=38.06 Aligned_cols=68 Identities=13% Similarity=0.200 Sum_probs=50.5
Q ss_pred CeeEEEEEe-CCEEEEEEEcCCCCHHHHHHHHhcccCCC-ccCcEEe--ccCccc-CCchhhhhcCCCCCCEE
Q 018493 54 PTIRVRVKY-GSIYHEIHINSQATFGELKKLLTGPTGLH-HEDQKLI--YKDKER-DSKAFLDVVGVKDKSKL 121 (355)
Q Consensus 54 ~~I~V~VK~-gg~~~~V~V~~~sTVgdLK~~I~e~TGVp-pe~QKLI--ykGK~l-dD~~tLs~~GIKdgSkI 121 (355)
|..+|.|.. +|.+....++.++||++|.+-|....+-+ .....|+ |=.|.+ +++.+|.++|+.+...+
T Consensus 3 p~t~iqiRlpdG~r~~~rF~~~~tv~~l~~~v~~~~~~~~~~~f~L~t~fP~k~l~~~~~Tl~eagL~~s~v~ 75 (79)
T cd01770 3 PTTSIQIRLADGKRLVQKFNSSHRVSDVRDFIVNARPEFAARPFTLMTAFPVKELSDESLTLKEANLLNAVIV 75 (79)
T ss_pred CeeEEEEECCCCCEEEEEeCCCCcHHHHHHHHHHhCCCCCCCCEEEecCCCCcccCCCCCcHHHCCCcCcEEE
Confidence 456667764 45667778999999999999999876433 3556776 667774 56889999999965433
No 70
>cd01772 SAKS1_UBX SAKS1-like UBX domain. SAKS1 (SAPK-substrate-1), also known as Y33K, is a widely expressed protein containing N-terminal UBA (ubiquitin-associated) and C-terminal UBX (ubiqiutin-like) domains that was identified as a substrate of stress-activated protein kinases (SAPKs). SAKS1 is related evolutionarily to two other UBA/UBX-containing proteins, p47 and Faf1. The UBA and UBX domains of SAKS1 bind ubiquitin tetramers and valosin-containing protein (VCP), respectively suggesting a role for SAKS1 as an adaptor that directs VCP to polyubiquitinated proteins facilitating its destruction by the proteasome. The UBX domain has a beta-grasp fold similar to that of ubiquitin however, UBX lacks the c-terminal double glycine motif and is thus unlikely to be conjugated to other proteins.
Probab=93.10 E-value=0.74 Score=36.52 Aligned_cols=68 Identities=12% Similarity=0.205 Sum_probs=51.8
Q ss_pred eeEEEEE-eCCEEEEEEEcCCCCHHHHHHHHhcccCCCccCcEEe--ccCcccC---CchhhhhcCCCCCCEEEE
Q 018493 55 TIRVRVK-YGSIYHEIHINSQATFGELKKLLTGPTGLHHEDQKLI--YKDKERD---SKAFLDVVGVKDKSKLVL 123 (355)
Q Consensus 55 ~I~V~VK-~gg~~~~V~V~~~sTVgdLK~~I~e~TGVppe~QKLI--ykGK~ld---D~~tLs~~GIKdgSkImL 123 (355)
..+|.|+ .+|......++.++|+.+|.+-|....+.. ....|+ |--|.+. .+.+|.++|+.+...|+|
T Consensus 4 ~~~i~iRlp~G~~~~~~F~~~~tl~~v~~fV~~~~~~~-~~f~L~t~fPrk~~~~~d~~~TL~elgL~Psa~L~v 77 (79)
T cd01772 4 ETRIQIRLLDGTTLKQTFKAREQLAAVRLFVELNTGNG-GPFTLMTPFPRKVFTEDDMEKPLQELGLVPSAVLIV 77 (79)
T ss_pred EEEEEEECCCCCEEEEEeCCCChHHHHHHHHHHcCCCC-CCEEEEeCCCCeECCcccccCCHHHCCCCCceEEEE
Confidence 3556666 355667778999999999999998765433 556776 6677754 257999999999988876
No 71
>cd01773 Faf1_like1_UBX Faf1 ike-1 UBX domain. Faf1_like1 is a protein of unknown function with a domain architecture that includes the UAS (ubiquitin-associated) and UBX (ubiquitin-like) domains. This protein is related to other UBA/UBX-containing proteins like Faf1, p47, and SAKS1 and may serve as an adaptor molecule that shuttles proteins to the proteasome for degradation. The UBX domain has a beta-grasp fold similar to that of ubiquitin however, UBX lacks the c-terminal double glycine motif and is thus unlikely to be conjugated to other proteins.
Probab=93.10 E-value=0.84 Score=37.22 Aligned_cols=71 Identities=18% Similarity=0.322 Sum_probs=57.4
Q ss_pred CCeeEEEEEe-CCEEEEEEEcCCCCHHHHHHHHhcccCCCccCcEEe--ccCcc---cCCchhhhhcCCCCCCEEEEe
Q 018493 53 PPTIRVRVKY-GSIYHEIHINSQATFGELKKLLTGPTGLHHEDQKLI--YKDKE---RDSKAFLDVVGVKDKSKLVLV 124 (355)
Q Consensus 53 ~~~I~V~VK~-gg~~~~V~V~~~sTVgdLK~~I~e~TGVppe~QKLI--ykGK~---ldD~~tLs~~GIKdgSkImLv 124 (355)
++.-+|.|+. +|....-.+..+.++.+|...|.. .|.+++..+|+ |==|. .+.+.+|.++|+.+..+|+|-
T Consensus 3 ~~~t~i~vRlP~G~r~~rrF~~~~~L~~v~~fv~~-~g~~~~~f~L~t~FPRr~~~~~d~~~TL~e~GL~P~~~LfVq 79 (82)
T cd01773 3 GPKARLMLRYPDGKREQIALPEQAKLLALVRHVQS-KGYPNERFELLTNFPRRKLSHLDYDITLQEAGLCPQETVFVQ 79 (82)
T ss_pred CCeeEEEEECCCCCEEEEEeCCCCcHHHHHHHHHh-cCCCCCCEEEecCCCCcccCCcccCCCHHHcCCCCCcEEEEe
Confidence 5666777775 567778889999999999999998 57788999998 44444 355679999999999999874
No 72
>KOG4583 consensus Membrane-associated ER protein involved in stress response (contains ubiquitin-like domain) [Posttranslational modification, protein turnover, chaperones]
Probab=92.83 E-value=0.081 Score=53.27 Aligned_cols=63 Identities=22% Similarity=0.136 Sum_probs=46.9
Q ss_pred CCeeEEEEEeCCEEE-EEEEcC--CCCHHHHHHHHhcccCCC--ccCcEEeccCcccCCchhhhhcCC
Q 018493 53 PPTIRVRVKYGSIYH-EIHINS--QATFGELKKLLTGPTGLH--HEDQKLIYKDKERDSKAFLDVVGV 115 (355)
Q Consensus 53 ~~~I~V~VK~gg~~~-~V~V~~--~sTVgdLK~~I~e~TGVp--pe~QKLIykGK~ldD~~tLs~~GI 115 (355)
.-.+++.||.....| +++|.. .-||++||..++...--. +.+|||||.||.+.|...|++.=+
T Consensus 7 e~~v~lliks~Nq~y~dl~i~~dl~wtv~~Lk~hls~VyPskpl~~dqrliYsgkllld~qcl~d~lr 74 (391)
T KOG4583|consen 7 EFPVTLLIKSPNQSYKDLSISLDLKWTVGDLKVHLSQVYPSKPLELDQRLIYSGKLLLDHQCLTDWLR 74 (391)
T ss_pred CcceEEEecCCCccccceeeehhhhhhHHHHhhhHhhcCCCCCchhhHHHHhhccccccchhHHHHHH
Confidence 345778888766555 355554 459999999999875332 358999999999999988887633
No 73
>cd06406 PB1_P67 A PB1 domain is present in p67 proteins which forms a signaling complex with p40, a crucial step for activation of NADPH oxidase during phagocytosis. PB1 domain is a modular domain mediating specific protein-protein interactions which play a role in many critical cell processes . A canonical PB1-PB1 interaction, which involves heterodimerization of two PB1 domains, is required for the formation of macromolecular signaling complexes ensuring specificity and fidelity during cellular signaling. The interaction between two PB1 domain depends on the type of PB1. There are three types of PB1 domains: type I which contains an OPCA motif, acidic aminoacid cluster, type II which contains a basic cluster, and type I/II which contains both an OPCA motif and a basic cluster. Interactions of PB1 domains with other protein domains have been described as noncanonical PB1-interactions. The PB1 domain module is conserved in amoebas, fungi, animals, and plants. The p67 proteins contain
Probab=92.74 E-value=0.3 Score=39.80 Aligned_cols=47 Identities=19% Similarity=0.290 Sum_probs=40.2
Q ss_pred eEEEEEeCCEEEEEEEcCCCCHHHHHHHHhcccCCCccCcEEeccCcc
Q 018493 56 IRVRVKYGSIYHEIHINSQATFGELKKLLTGPTGLHHEDQKLIYKDKE 103 (355)
Q Consensus 56 I~V~VK~gg~~~~V~V~~~sTVgdLK~~I~e~TGVppe~QKLIykGK~ 103 (355)
..|+|.+.. ++-|.+++..++.+|+++|.++.++|++..+|-|+...
T Consensus 3 ~vvKV~f~~-tIaIrvp~~~~y~~L~~ki~~kLkl~~e~i~LsYkde~ 49 (80)
T cd06406 3 YVVKVHFKY-TVAIQVARGLSYATLLQKISSKLELPAEHITLSYKSEA 49 (80)
T ss_pred eEEEEEEEE-EEEEEcCCCCCHHHHHHHHHHHhCCCchhcEEEeccCC
Confidence 345555555 78899999999999999999999999999999998653
No 74
>cd05992 PB1 The PB1 domain is a modular domain mediating specific protein-protein interactions which play a role in many critical cell processes, such as osteoclastogenesis, angiogenesis, early cardiovascular development, and cell polarity. A canonical PB1-PB1 interaction, which involves heterodimerization of two PB1 domain, is required for the formation of macromolecular signaling complexes ensuring specificity and fidelity during cellular signaling. The interaction between two PB1 domain depends on the type of PB1. There are three types of PB1 domains: type I which contains an OPCA motif, acidic aminoacid cluster, type II which contains a basic cluster, and type I/II which contains both an OPCA motif and a basic cluster. Interactions of PB1 domains with other protein domains have been described as a noncanonical PB1-interactions. The PB1 domain module is conserved in amoebas, fungi, animals, and plants.
Probab=92.45 E-value=0.27 Score=38.06 Aligned_cols=46 Identities=30% Similarity=0.509 Sum_probs=39.8
Q ss_pred eEEEEEeCCEEEEEEEc-CCCCHHHHHHHHhcccCCCccCcEEeccC
Q 018493 56 IRVRVKYGSIYHEIHIN-SQATFGELKKLLTGPTGLHHEDQKLIYKD 101 (355)
Q Consensus 56 I~V~VK~gg~~~~V~V~-~~sTVgdLK~~I~e~TGVppe~QKLIykG 101 (355)
|+|++.+++..+.+.++ ...|+.+|+.+|....+++.....|-|+.
T Consensus 1 ~~vK~~~~~~~~~~~~~~~~~s~~~L~~~i~~~~~~~~~~~~l~y~D 47 (81)
T cd05992 1 VRVKVKYGGEIRRFVVVSRSISFEDLRSKIAEKFGLDAVSFKLKYPD 47 (81)
T ss_pred CcEEEEecCCCEEEEEecCCCCHHHHHHHHHHHhCCCCCcEEEEeeC
Confidence 57899999989999999 89999999999999999987666666665
No 75
>cd06407 PB1_NLP A PB1 domain is present in NIN like proteins (NLP), a key enzyme in a process of establishment of symbiosis betweeen legumes and nitrogen fixing bacteria (Rhizobium). The PB1 domain is a modular domain mediating specific protein-protein interaction which play a role in many critical cell processes like osteoclastogenesis, angiogenesis, early cardiovascular development, and cell polarity. A canonical PB1-PB1 interaction, which involves heterodimerization of two PB1 domains, is required for the formation of macromolecular signaling complexes ensuring specificity and fidelity during cellular signaling. The interaction between two PB1 domain depends on the type of PB1. There are three types of PB1 domains: type I which contains an OPCA motif, acidic aminoacid cluster, type II which contains a basic cluster, and type I/II which contains both an OPCA motif and a basic cluster. Interactions of PB1 domains with other protein domains have been described as noncanonical PB1-inte
Probab=92.35 E-value=0.34 Score=39.20 Aligned_cols=46 Identities=26% Similarity=0.363 Sum_probs=39.3
Q ss_pred eEEEEEeCCEEEEEEEcCCCCHHHHHHHHhcccCCCc-cCcEEeccC
Q 018493 56 IRVRVKYGSIYHEIHINSQATFGELKKLLTGPTGLHH-EDQKLIYKD 101 (355)
Q Consensus 56 I~V~VK~gg~~~~V~V~~~sTVgdLK~~I~e~TGVpp-e~QKLIykG 101 (355)
|+|++.+|+..+-+.++++.++.+|++.|....++.. ....|-|..
T Consensus 1 ~~vK~~~~~d~~r~~l~~~~~~~~L~~~i~~r~~~~~~~~f~LkY~D 47 (82)
T cd06407 1 VRVKATYGEEKIRFRLPPSWGFTELKQEIAKRFKLDDMSAFDLKYLD 47 (82)
T ss_pred CEEEEEeCCeEEEEEcCCCCCHHHHHHHHHHHhCCCCCCeeEEEEEC
Confidence 5789999999999999999999999999999999865 455555544
No 76
>PRK06437 hypothetical protein; Provisional
Probab=92.14 E-value=0.6 Score=36.11 Aligned_cols=60 Identities=27% Similarity=0.401 Sum_probs=47.7
Q ss_pred CeeEEEEEeCCEEEEEEEcCCCCHHHHHHHHhcccCCCccCcEEeccCcccCCchhhhhcCCCCCCEEEEee
Q 018493 54 PTIRVRVKYGSIYHEIHINSQATFGELKKLLTGPTGLHHEDQKLIYKDKERDSKAFLDVVGVKDKSKLVLVE 125 (355)
Q Consensus 54 ~~I~V~VK~gg~~~~V~V~~~sTVgdLK~~I~e~TGVppe~QKLIykGK~ldD~~tLs~~GIKdgSkImLv~ 125 (355)
.+|+|+ |+....++++...|+.+|=+. .|++++...+..+|.... .++-|++|++|-++.
T Consensus 3 ~~~~v~---g~~~~~~~i~~~~tv~dLL~~----Lgi~~~~vaV~vNg~iv~-----~~~~L~dgD~Veiv~ 62 (67)
T PRK06437 3 AMIRVK---GHINKTIEIDHELTVNDIIKD----LGLDEEEYVVIVNGSPVL-----EDHNVKKEDDVLILE 62 (67)
T ss_pred ceEEec---CCcceEEEcCCCCcHHHHHHH----cCCCCccEEEEECCEECC-----CceEcCCCCEEEEEe
Confidence 345554 767778888888999998766 488888888889999876 566889999998874
No 77
>cd01771 Faf1_UBX Faf1 UBX domain. Faf1 (fas-associated factor1) is a nucleolar protein that was first identified as an interaction partner of the death receptor Fas. Faf1 contains N-terminal UAS (ubiquitin-associated) and C-terminal UBX (ubiquitin-like) domains and is closely related to other UBA/UBX-containing proteins like p47, Rep8 and SAKS1. Faf1 is thought to be involved in 18S rRNA synthesis and/or 40S ribosomal subunit assembly. The UBX domain has a beta-grasp fold similar to that of ubiquitin however, UBX lacks the c-terminal double glycine motif and is thus unlikely to be conjugated to other proteins.
Probab=91.80 E-value=1.5 Score=35.24 Aligned_cols=69 Identities=17% Similarity=0.301 Sum_probs=54.6
Q ss_pred CeeEEEEEe-CCEEEEEEEcCCCCHHHHHHHHhcccCCCccCcEEe--ccCccc---CCchhhhhcCCCCCCEEEE
Q 018493 54 PTIRVRVKY-GSIYHEIHINSQATFGELKKLLTGPTGLHHEDQKLI--YKDKER---DSKAFLDVVGVKDKSKLVL 123 (355)
Q Consensus 54 ~~I~V~VK~-gg~~~~V~V~~~sTVgdLK~~I~e~TGVppe~QKLI--ykGK~l---dD~~tLs~~GIKdgSkImL 123 (355)
+.++|.|+. +|....-.+..++++++|..-|... |.+++..+|+ |==|.+ +.+.+|.++|+.+...|+|
T Consensus 3 ~~~~i~iRlP~G~r~~rrF~~t~~L~~l~~fv~~~-~~~~~~f~L~t~fPRk~~~~~d~~~TL~e~gL~p~~~L~V 77 (80)
T cd01771 3 PISKLRVRTPSGDFLERRFLGDTPLQVLLNFVASK-GYPIDEYKLLSSWPRRDLTQLDPNFTLLELKLYPQETLIL 77 (80)
T ss_pred CeEEEEEECCCCCEEEEEeCCCCcHHHHHHHHHhc-CCCCCCEEEecCCCCCCCcCCCCCCcHHHcCCCCCcEEEE
Confidence 566777775 4566677899999999999999875 7788889997 555554 4467999999998888877
No 78
>KOG2982 consensus Uncharacterized conserved protein [Function unknown]
Probab=91.32 E-value=0.29 Score=49.41 Aligned_cols=72 Identities=15% Similarity=0.171 Sum_probs=55.4
Q ss_pred CeeEEEEEeCCEEEEEEEcCCCCHHHHHHHHhcccCCCccCcEEec---cCcc-----cCCchhhhhcCCCCCCEEEEee
Q 018493 54 PTIRVRVKYGSIYHEIHINSQATFGELKKLLTGPTGLHHEDQKLIY---KDKE-----RDSKAFLDVVGVKDKSKLVLVE 125 (355)
Q Consensus 54 ~~I~V~VK~gg~~~~V~V~~~sTVgdLK~~I~e~TGVppe~QKLIy---kGK~-----ldD~~tLs~~GIKdgSkImLv~ 125 (355)
..+++...+....-..-|.-+-||-||+..+..+.||-+.++||+| .||. .+.+.+|..|+|.+|+.+++=+
T Consensus 337 krvk~l~~~~~v~~s~~I~~~~TV~D~~~~Ld~~VGvk~trMkLf~L~eD~rt~~~ss~~~N~~L~~fkIedGDs~lvqe 416 (418)
T KOG2982|consen 337 KRVKALNSGPKVIASGLICMTRTVLDFMKILDPKVGVKFTRMKLFLLREDGRTDDFSSSDYNMPLHYFKIEDGDSFLVQE 416 (418)
T ss_pred heeeeeccCCccccceEEEeehHHHHHHHHhccccccccceeEEEEEcccCccCCccccCCCCcceEEeccCCCEeeeec
Confidence 3344444444444555666677999999999999999999999996 3554 4667899999999999988743
No 79
>cd01774 Faf1_like2_UBX Faf1 ike-2 UBX domain. Faf1_like2 is a protein of unknown function with a domain architecture that includes the UAS (ubiquitin-associated) and UBX (ubiquitin-like) domains. This protein is related to other UBA/UBX-containing proteins like Faf1, p47, and SAKS1 and may serve as an adaptor molecule that shuttles proteins to the proteasome for degradation. The UBX domain has a beta-grasp fold similar to that of ubiquitin however, UBX lacks the c-terminal double glycine motif and is thus unlikely to be conjugated to other proteins.
Probab=91.11 E-value=1.7 Score=35.30 Aligned_cols=69 Identities=12% Similarity=0.098 Sum_probs=51.8
Q ss_pred CeeEEEEEe-CCEEEEEEEcCCCCHHHHHHHHhcccCCCccCcEEeccC--cccC--------CchhhhhcCCCCCCEEE
Q 018493 54 PTIRVRVKY-GSIYHEIHINSQATFGELKKLLTGPTGLHHEDQKLIYKD--KERD--------SKAFLDVVGVKDKSKLV 122 (355)
Q Consensus 54 ~~I~V~VK~-gg~~~~V~V~~~sTVgdLK~~I~e~TGVppe~QKLIykG--K~ld--------D~~tLs~~GIKdgSkIm 122 (355)
..++|.|+. +|....-.+..+.|+.+|..-|.. .+..++...|++.= |.+. .+.+|.++||.+...|+
T Consensus 3 ~~~~I~iRlp~G~Rl~rrF~~~~tl~~l~~fv~~-~~~~~~~f~L~t~FPrr~~~~~~~~~~~~~~TL~eaGL~~s~~L~ 81 (85)
T cd01774 3 DTVKIVFKLPNGTRVERRFLFTQSLRVIHDFLFS-LKETPEKFQIVTNFPRRVLPCLPSEGDPPPPTLLEAGLSNSEVLF 81 (85)
T ss_pred ceEEEEEECCCCCEEEEEeCCCCcHHHHHHHHHh-CCCCCCcEEEecCCCCccccccccccCcCCCCHHHcCCCCccEEE
Confidence 356667764 456677789999999999999975 45566888888644 5553 46799999999777766
Q ss_pred E
Q 018493 123 L 123 (355)
Q Consensus 123 L 123 (355)
|
T Consensus 82 V 82 (85)
T cd01774 82 V 82 (85)
T ss_pred E
Confidence 5
No 80
>COG5227 SMT3 Ubiquitin-like protein (sentrin) [Posttranslational modification, protein turnover, chaperones]
Probab=90.91 E-value=0.54 Score=39.44 Aligned_cols=71 Identities=14% Similarity=0.212 Sum_probs=62.4
Q ss_pred CCeeEEEEE-eCCEEEEEEEcCCCCHHHHHHHHhcccCCCccCcEEeccCcccCCchhhhhcCCCCCCEEEE
Q 018493 53 PPTIRVRVK-YGSIYHEIHINSQATFGELKKLLTGPTGLHHEDQKLIYKDKERDSKAFLDVVGVKDKSKLVL 123 (355)
Q Consensus 53 ~~~I~V~VK-~gg~~~~V~V~~~sTVgdLK~~I~e~TGVppe~QKLIykGK~ldD~~tLs~~GIKdgSkImL 123 (355)
...|.++|. .++...-+.|-.+.++.-|-+..+...|-.-+..|++|.|+..+-+.+=.+++..+|+.|-.
T Consensus 22 t~hinLkvv~qd~telfFkiKktT~f~klm~af~~rqGK~m~slRfL~dG~rI~~dqTP~dldmEdnd~iEa 93 (103)
T COG5227 22 TKHINLKVVDQDGTELFFKIKKTTTFKKLMDAFSRRQGKNMSSLRFLFDGKRIDLDQTPGDLDMEDNDEIEA 93 (103)
T ss_pred ccccceEEecCCCCEEEEEEeccchHHHHHHHHHHHhCcCcceeEEEEcceecCCCCChhhcCCccchHHHH
Confidence 346888888 46777778899999999999999999999999999999999999999999999999876643
No 81
>KOG4250 consensus TANK binding protein kinase TBK1 [Signal transduction mechanisms]
Probab=89.71 E-value=6.2 Score=43.53 Aligned_cols=68 Identities=21% Similarity=0.263 Sum_probs=52.6
Q ss_pred eeEEEEEeCCEEEEEEEcCCCCHHHHHHHHhcccCCCccCcEEeccCcc--cCCchhhhhcCCCCCCEEEEe
Q 018493 55 TIRVRVKYGSIYHEIHINSQATFGELKKLLTGPTGLHHEDQKLIYKDKE--RDSKAFLDVVGVKDKSKLVLV 124 (355)
Q Consensus 55 ~I~V~VK~gg~~~~V~V~~~sTVgdLK~~I~e~TGVppe~QKLIykGK~--ldD~~tLs~~GIKdgSkImLv 124 (355)
.|.|.-......|.+.++++.|+..|+.+|+..||||.+.|-|+|.|.. +.|.....--|+ .+-|+++
T Consensus 315 vvhiFs~~~~~~~~~~~~~~ntl~~~~~~I~~~Tgipe~~qeLL~e~~~~h~~~~~Q~~~dg~--~~~l~l~ 384 (732)
T KOG4250|consen 315 VVHIFSMVQATSHEYYVHADNTLHSLIERISKQTGIPEGKQELLFEGGLSHLEDSAQCIPDGL--DSPLYLV 384 (732)
T ss_pred eeEEEeeccceEEEEecChhhhHHHHHHHHHHhhCCCCccceeeeecCccccCcccccCCCCC--CCceEEE
Confidence 3666666678889999999999999999999999999999999999876 556444444442 2334544
No 82
>cd06408 PB1_NoxR The PB1 domain is present in the Epichloe festucae NoxR protein (NADPH oxidase regulator), a key regulator of NADPH oxidase isoform, NoxA. NoxA is essential for growth control of the fungal endophyte in plant tissue in the process of symbiotic interaction between a fungi and its plant host. The Epichloe festucae p67(phox)-like regulator, NoxR, dispensable in culture but essential in plants for the symbiotic interaction. Plants infected with a noxR deletion mutant show severe stunting and premature senescence, whereas hyphae in the meristematic tissues show increased branching leading to increased fungal colonization of pseudostem and leaf blade tissue. The PB1 domain is a modular domain mediating specific protein-protein interactions which a play role in many critical cell processes such as osteoclastogenesis, angiogenesis, early cardiovascular development, and cell polarity. A canonical PB1-PB1 interaction, which involves heterodimerization of two PB1 domains, is
Probab=88.98 E-value=1.2 Score=36.80 Aligned_cols=45 Identities=22% Similarity=0.317 Sum_probs=38.1
Q ss_pred eeEEEEEeCCEEEEEEEcCCCCHHHHHHHHhcccCCCccCcEEecc
Q 018493 55 TIRVRVKYGSIYHEIHINSQATFGELKKLLTGPTGLHHEDQKLIYK 100 (355)
Q Consensus 55 ~I~V~VK~gg~~~~V~V~~~sTVgdLK~~I~e~TGVppe~QKLIyk 100 (355)
.|+|+|.+++..+.|.|+++.++.+|..+|.+++|+. +..+|=|+
T Consensus 2 ~ikVKv~~~~Dv~~i~v~~~i~f~dL~~kIrdkf~~~-~~~~iKyk 46 (86)
T cd06408 2 KIRVKVHAQDDTRYIMIGPDTGFADFEDKIRDKFGFK-RRLKIKMK 46 (86)
T ss_pred cEEEEEEecCcEEEEEcCCCCCHHHHHHHHHHHhCCC-CceEEEEE
Confidence 4789999999999999999999999999999999995 44444444
No 83
>PF13019 Telomere_Sde2: Telomere stability and silencing
Probab=88.81 E-value=1.7 Score=39.71 Aligned_cols=64 Identities=19% Similarity=0.149 Sum_probs=47.9
Q ss_pred eEEEEEe-CC----EEEEEEEcCCCCHHHHHHHHhcccCCCccCcE-Eec-cCcc--cCCchhhhhcCCCCCC
Q 018493 56 IRVRVKY-GS----IYHEIHINSQATFGELKKLLTGPTGLHHEDQK-LIY-KDKE--RDSKAFLDVVGVKDKS 119 (355)
Q Consensus 56 I~V~VK~-gg----~~~~V~V~~~sTVgdLK~~I~e~TGVppe~QK-LIy-kGK~--ldD~~tLs~~GIKdgS 119 (355)
|.|.|+. .+ .+..+.+++++||.+|+..|...++++...|- |.+ .|+. ..++..++.+.-.+.+
T Consensus 1 i~Vlvss~~g~~lp~tl~~~lp~~ttv~dL~~~l~~~~~~~~~~~~~L~~~~n~~l~~~~~~~~s~l~~~~~~ 73 (162)
T PF13019_consen 1 INVLVSSFDGLTLPPTLSLSLPSTTTVSDLKDRLSERLPIPSSSQLYLTTNSNGQLSPSSDIPLSSLLSSSQD 73 (162)
T ss_pred CeEEEecCCCCCCCCeEEeeCCCCCcHHHHHHHHHhhcCCCccceeEEEEeCCCeeCCCccccHHhhccCcCC
Confidence 4566774 33 57888999999999999999999999998853 433 3444 4677778887766554
No 84
>KOG1639 consensus Steroid reductase required for elongation of the very long chain fatty acids [Lipid transport and metabolism]
Probab=88.59 E-value=0.93 Score=44.32 Aligned_cols=56 Identities=14% Similarity=0.122 Sum_probs=44.3
Q ss_pred EEEcCCCCHHHHHHHHhcc-cCCCccCcEEe----ccCcccCCchhhhhcCCCCCCEEEEe
Q 018493 69 IHINSQATFGELKKLLTGP-TGLHHEDQKLI----YKDKERDSKAFLDVVGVKDKSKLVLV 124 (355)
Q Consensus 69 V~V~~~sTVgdLK~~I~e~-TGVppe~QKLI----ykGK~ldD~~tLs~~GIKdgSkImLv 124 (355)
.+++...|++|+++.+... ..+.+.++++- -+||.+-|+.+|++||+.+|++|.+-
T Consensus 17 ~~~s~~~ti~d~~~~~~~~~~k~~~~~~r~tlr~e~kgkpl~~~s~l~e~~~~s~~~i~vK 77 (297)
T KOG1639|consen 17 KDLSGSETIDDLLKAISAKNLKITPYRIRLTLRVEPKGKPLIDNSKLQEYGDGSGATIYVK 77 (297)
T ss_pred ecCCCCCcHHHHHHHHHHhhhccCccchhheeeccCCCccccchhHHHHhccCCCCEEEEe
Confidence 4566778999999766654 66777555544 47999999999999999999998875
No 85
>PRK08364 sulfur carrier protein ThiS; Provisional
Probab=87.99 E-value=3.1 Score=32.25 Aligned_cols=62 Identities=21% Similarity=0.205 Sum_probs=44.3
Q ss_pred eeEEEEEeCCEEEEEEEcCCCCHHHHHHHHhcccCCCccCcEEeccCcccCCchhhhhcCCCCCCEEEEee
Q 018493 55 TIRVRVKYGSIYHEIHINSQATFGELKKLLTGPTGLHHEDQKLIYKDKERDSKAFLDVVGVKDKSKLVLVE 125 (355)
Q Consensus 55 ~I~V~VK~gg~~~~V~V~~~sTVgdLK~~I~e~TGVppe~QKLIykGK~ldD~~tLs~~GIKdgSkImLv~ 125 (355)
+|+|++-.......++++...|+.+|-+.+ +++++.-.+..+|.... .+.-|++|++|-++.
T Consensus 4 mm~v~vng~~~~~~~~~~~~~tv~~ll~~l----~~~~~~v~v~vNg~iv~-----~~~~l~~gD~Veii~ 65 (70)
T PRK08364 4 MIRVKVIGRGIEKEIEWRKGMKVADILRAV----GFNTESAIAKVNGKVAL-----EDDPVKDGDYVEVIP 65 (70)
T ss_pred EEEEEEeccccceEEEcCCCCcHHHHHHHc----CCCCccEEEEECCEECC-----CCcCcCCCCEEEEEc
Confidence 455555333235567888889999998776 77777766778888764 356689999998874
No 86
>cd06398 PB1_Joka2 The PB1 domain is present in the Nicotiana plumbaginifolia Joka2 protein which interacts with sulfur stress inducible UP9 protein. The PB1 domain is a modular domain mediating specific protein-protein interactions which play a role in many critical cell processes, such as osteoclastogenesis, angiogenesis, early cardiovascular development and cell polarity. A canonical PB1-PB1 interaction, which involves heterodimerization of two PB1 domain, is required for the formation of macromolecular signaling complexes ensuring specificity and fidelity during cellular signaling. The interaction between two PB1 domain depends on the type of PB1. There are three types of PB1 domains: type I which contains an OPCA motif, acidic aminoacid cluster, type II which contains a basic cluster, and type I/II which contains both an OPCA motif and a basic cluster. Interactions of PB1 domains with other protein domains have been described as noncanonical PB1-interactions. The PB1 domain module
Probab=87.21 E-value=2 Score=35.53 Aligned_cols=46 Identities=24% Similarity=0.393 Sum_probs=38.5
Q ss_pred eEEEEEeCCEEEEEEEcC-----CCCHHHHHHHHhcccCCCc-cCcEEeccC
Q 018493 56 IRVRVKYGSIYHEIHINS-----QATFGELKKLLTGPTGLHH-EDQKLIYKD 101 (355)
Q Consensus 56 I~V~VK~gg~~~~V~V~~-----~sTVgdLK~~I~e~TGVpp-e~QKLIykG 101 (355)
+.|+|+|++..+-+.++. +.++.+|+++|.+...+++ ...-|-|+.
T Consensus 1 l~vKv~y~~~~rRf~l~~~~~~~d~~~~~L~~kI~~~f~l~~~~~~~l~Y~D 52 (91)
T cd06398 1 LVVKVKYGGTLRRFTFPVAENQLDLNMDGLREKVEELFSLSPDADLSLTYTD 52 (91)
T ss_pred CEEEEEeCCEEEEEEeccccccCCCCHHHHHHHHHHHhCCCCCCcEEEEEEC
Confidence 468999999999898885 6899999999999999998 455565654
No 87
>cd06396 PB1_NBR1 The PB1 domain is an essential part of NBR1 protein, next to BRCA1, a scaffold protein mediating specific protein-protein interaction with both titin protein kinase and with another scaffold protein p62. A canonical PB1-PB1 interaction, which involves heterodimerization of two PB1 domain, is required for the formation of macromolecular signaling complexes ensuring specificity and fidelity during cellular signaling. The interaction between two PB1 domain depends on the type of PB1. There are three types of PB1 domains: type I which contains an OPCA motif, acidic aminoacid cluster, type II which contains a basic cluster, and type I/II which contains both an OPCA motif and a basic cluster. The NBR1 protein contains a type I PB1 domain.
Probab=86.71 E-value=1.5 Score=35.83 Aligned_cols=36 Identities=14% Similarity=0.395 Sum_probs=33.7
Q ss_pred eEEEEEeCCEEEEEEEcC--CCCHHHHHHHHhcccCCC
Q 018493 56 IRVRVKYGSIYHEIHINS--QATFGELKKLLTGPTGLH 91 (355)
Q Consensus 56 I~V~VK~gg~~~~V~V~~--~sTVgdLK~~I~e~TGVp 91 (355)
|+|++.|++.+..+.+++ ..++.+|++.|....+++
T Consensus 1 V~vKaty~~d~~rf~~~~~~~~~~~~L~~ev~~rf~l~ 38 (81)
T cd06396 1 VNLKVTYNGESQSFLVSDSENTTWASVEAMVKVSFGLN 38 (81)
T ss_pred CEEEEEECCeEEEEEecCCCCCCHHHHHHHHHHHhCCC
Confidence 689999999999999999 669999999999999999
No 88
>PLN02799 Molybdopterin synthase sulfur carrier subunit
Probab=83.72 E-value=4.1 Score=31.98 Aligned_cols=65 Identities=14% Similarity=0.234 Sum_probs=42.1
Q ss_pred eEEEEEe--------CCEEEEEEEcCCCCHHHHHHHHhccc-CCCc--cCcEEeccCcccCCchhhhhcCCCCCCEEEEe
Q 018493 56 IRVRVKY--------GSIYHEIHINSQATFGELKKLLTGPT-GLHH--EDQKLIYKDKERDSKAFLDVVGVKDKSKLVLV 124 (355)
Q Consensus 56 I~V~VK~--------gg~~~~V~V~~~sTVgdLK~~I~e~T-GVpp--e~QKLIykGK~ldD~~tLs~~GIKdgSkImLv 124 (355)
++|+|++ |.....++++...|+.+|.+.|.... ++.. ..-.+..+|+..+ .+.=|++|++|-++
T Consensus 2 m~i~V~~fa~~re~~g~~~~~~~~~~~~tv~~L~~~l~~~~p~l~~~~~~~~vavN~~~v~-----~~~~l~dgDeVai~ 76 (82)
T PLN02799 2 VEIKVLFFARARELTGVSDMTLELPAGSTTADCLAELVAKFPSLEEVRSCCVLALNEEYTT-----ESAALKDGDELAII 76 (82)
T ss_pred eEEEEEehHHHHHHhCCCeEEEECCCCCcHHHHHHHHHHHChhHHHHhhCcEEEECCEEcC-----CCcCcCCCCEEEEe
Confidence 4666665 33456778888899999999997654 1111 1123445666543 33468999999987
Q ss_pred e
Q 018493 125 E 125 (355)
Q Consensus 125 ~ 125 (355)
.
T Consensus 77 P 77 (82)
T PLN02799 77 P 77 (82)
T ss_pred C
Confidence 4
No 89
>cd00754 MoaD Ubiquitin domain of MoaD-like proteins. MoaD family. Members of this family are involved in biosynthesis of the molybdenum cofactor (Moco), an essential cofactor of a diverse group of redox enzymes. Moco biosynthesis is an evolutionarily conserved pathway present in eubacteria, archaea and eukaryotes. Moco contains a tricyclic pyranopterin, termed molybdopterin (MPT), that contains the cis-dithiolene group responsible for molybdenum ligation. This dithiolene group is generated by MPT synthase, the second major step in Moco biosynthesis. MPT synthase consists of a large (MoeE) and small (MoaD) subunit. The small subunit is inserted into the lare subunit to form the active site. The small subunit, which is structurally similar to ubiquitin, contains a C-terminal thiocarboxylated glycine residue that serves as a sulfur donor for the synthesis of the MPT dithiolene group.
Probab=83.30 E-value=3.4 Score=31.70 Aligned_cols=58 Identities=17% Similarity=0.144 Sum_probs=41.9
Q ss_pred CCEEEEEEEcCCCCHHHHHHHHhcccCC----CccCcEEeccCcccCCchhhhhcCCCCCCEEEEee
Q 018493 63 GSIYHEIHINSQATFGELKKLLTGPTGL----HHEDQKLIYKDKERDSKAFLDVVGVKDKSKLVLVE 125 (355)
Q Consensus 63 gg~~~~V~V~~~sTVgdLK~~I~e~TGV----ppe~QKLIykGK~ldD~~tLs~~GIKdgSkImLv~ 125 (355)
|.....++++...||.+|.+.|....+- ......+..+|+... .+.-|++|+.|.++.
T Consensus 14 g~~~~~~~~~~~~tv~~ll~~l~~~~~~~~~~~~~~~~v~vNg~~v~-----~~~~l~~gD~v~i~p 75 (80)
T cd00754 14 GKDEEELELPEGATVGELLDALEARYPGLLEELLARVRIAVNGEYVR-----LDTPLKDGDEVAIIP 75 (80)
T ss_pred CCceEEEECCCCCcHHHHHHHHHHHCchHHHhhhhcEEEEECCeEcC-----CCcccCCCCEEEEeC
Confidence 3344567787789999999999987542 234455667787765 345699999999874
No 90
>TIGR02958 sec_mycoba_snm4 secretion protein snm4. Members of this family are the 12-transmembrane domain protein snm4, where snm stands for secretion in mycocbacteria. This system acts on Mycobacterium tuberculosis related pair of virulence factors ESAT-6 and CFP-10 and on other homologs. The system is conserved in many Actinobacteria, including the non-pathogenic Mycobacterium smegmatis.
Probab=82.81 E-value=4.5 Score=42.23 Aligned_cols=70 Identities=26% Similarity=0.195 Sum_probs=57.5
Q ss_pred eEEEEEeCCEEEEEEEcCCCCHHHHHHHHhcccCCC------ccCcEEe-ccCcccCCchhhhhcCCCCCCEEEEee
Q 018493 56 IRVRVKYGSIYHEIHINSQATFGELKKLLTGPTGLH------HEDQKLI-YKDKERDSKAFLDVVGVKDKSKLVLVE 125 (355)
Q Consensus 56 I~V~VK~gg~~~~V~V~~~sTVgdLK~~I~e~TGVp------pe~QKLI-ykGK~ldD~~tLs~~GIKdgSkImLv~ 125 (355)
.+|+|..+....++-+|.+..|.||--.|-...|=. +..-.|- -.|..+|.+.+|.+.||.||+.++|..
T Consensus 3 ~RVtV~~~~~~~DlaLPa~~PvaellP~ll~~~~~~~~~~~~~~~w~L~r~gG~pL~~~~sL~~~gV~DG~~L~L~p 79 (452)
T TIGR02958 3 CRVTVLAGRRAVDVALPADVPVAELIPDLVDLLDDRGAAELGAVRWALARAGGSPLDPDASLAEAGVRDGELLVLVP 79 (452)
T ss_pred EEEEEeeCCeeeeeecCCCCcHHHHHHHHHHHhCcccccCCCCcceEEecCCCCCCCCCCCHHHcCCCCCCeEEEee
Confidence 578899988889999999999999998888877642 2223333 456679999999999999999999985
No 91
>KOG0012 consensus DNA damage inducible protein [Replication, recombination and repair]
Probab=82.52 E-value=1.9 Score=43.96 Aligned_cols=63 Identities=24% Similarity=0.256 Sum_probs=55.6
Q ss_pred CCEEEEEEEcCCCCHHHHHHHHhcccCCCccCcEEeccCcccCC--chhhhhcCCCCCCEEEEee
Q 018493 63 GSIYHEIHINSQATFGELKKLLTGPTGLHHEDQKLIYKDKERDS--KAFLDVVGVKDKSKLVLVE 125 (355)
Q Consensus 63 gg~~~~V~V~~~sTVgdLK~~I~e~TGVppe~QKLIykGK~ldD--~~tLs~~GIKdgSkImLv~ 125 (355)
..+..++.+..+..+.+|+..+...+|+..+..-|+|+++.+.+ ...|..||+++|+.|++=.
T Consensus 11 ~~~~~~i~v~~dg~L~nl~aL~~~d~g~~~~~~~li~n~~~l~s~~s~~l~Q~g~~~~dsl~lr~ 75 (380)
T KOG0012|consen 11 FEKKFPIPVTTDGELNNLAALCWKDTGIVYDPSDLIYNPRPLVSNESQGLTQIGLKDGDSLALRC 75 (380)
T ss_pred ceeeeccccccccchhhHHHHHHHHhCcccchhhcccCCCccccchhhhhhhcccccceeEeccC
Confidence 44667888999999999999999999999999999999999554 5789999999999998854
No 92
>PF14836 Ubiquitin_3: Ubiquitin-like domain; PDB: 3JYU_A 4A3O_B 3PPA_A 3T9L_A 4A3P_A 3PV1_A.
Probab=81.99 E-value=3.9 Score=33.91 Aligned_cols=58 Identities=16% Similarity=0.214 Sum_probs=40.8
Q ss_pred EEEEEEcCCCCHHHHHHHHhcccCCCccCcEEecc----Ccc-c-CCchhhhhcCCCCCCEEEEe
Q 018493 66 YHEIHINSQATFGELKKLLTGPTGLHHEDQKLIYK----DKE-R-DSKAFLDVVGVKDKSKLVLV 124 (355)
Q Consensus 66 ~~~V~V~~~sTVgdLK~~I~e~TGVppe~QKLIyk----GK~-l-dD~~tLs~~GIKdgSkImLv 124 (355)
.+...+...+||+.+...+.+.+.| .+.-||--+ +-+ | +...+|.++||.+|..|+|=
T Consensus 15 ~~t~~FSk~DTI~~v~~~~rklf~i-~~E~RLW~~~~~~~~e~L~~~~~Tv~da~L~~gQ~vliE 78 (88)
T PF14836_consen 15 VLTKQFSKTDTIGFVEKEMRKLFNI-QEETRLWNKYSENSYELLNNPEITVEDAGLYDGQVVLIE 78 (88)
T ss_dssp EEEEEE-TTSBHHHHHHHHHHHCT--TS-EEEEEECTTTCEEEE--TTSBTTTTT--TTEEEEEE
T ss_pred HhHhhccccChHHHHHHHHHHHhCC-CccceehhccCCcchhhhCCCCccHHHccCcCCCEEEEE
Confidence 4566789999999999999999999 666788532 222 4 45579999999999977663
No 93
>PF10209 DUF2340: Uncharacterized conserved protein (DUF2340); InterPro: IPR018794 This entry consists of small proteins of approximately 150 amino acids whose function is unknown.
Probab=80.05 E-value=4.1 Score=35.74 Aligned_cols=55 Identities=20% Similarity=0.340 Sum_probs=41.3
Q ss_pred EcC-CCCHHHHHHHHhc----ccCCCc------cCcEEecc----------------C-ccc---CCchhhhhcCCCCCC
Q 018493 71 INS-QATFGELKKLLTG----PTGLHH------EDQKLIYK----------------D-KER---DSKAFLDVVGVKDKS 119 (355)
Q Consensus 71 V~~-~sTVgdLK~~I~e----~TGVpp------e~QKLIyk----------------G-K~l---dD~~tLs~~GIKdgS 119 (355)
|+. +.||++|++.+.+ ..|++| +..||+++ . -.+ +++.+|.++||.+..
T Consensus 22 vdL~~~Tv~~l~~~v~~~I~t~~~~~Pfrn~~yDtlKIy~~AHg~Kt~nLvInle~De~~iL~~~~~~~tL~~~gv~nET 101 (122)
T PF10209_consen 22 VDLKDTTVKDLKEQVKQDIKTRPGLPPFRNVKYDTLKIYTKAHGSKTNNLVINLEDDEDWILDVSDDDKTLKELGVENET 101 (122)
T ss_pred CCcccCcHHHHHHHHHHHHhcCCCCCCceeeecceEEEEecCCCCCcCCceeeccCCcceeeecCCCCCcHHHcCCCccc
Confidence 676 7899999877665 467765 67888854 1 235 677789999999999
Q ss_pred EEEEee
Q 018493 120 KLVLVE 125 (355)
Q Consensus 120 kImLv~ 125 (355)
.|-+..
T Consensus 102 EiSfF~ 107 (122)
T PF10209_consen 102 EISFFN 107 (122)
T ss_pred eeeeeC
Confidence 988764
No 94
>cd06410 PB1_UP2 Uncharacterized protein 2. The PB1 domain is a modular domain mediating specific protein-protein interaction which play a role in many critical cell processes such as osteoclastogenesis, angiogenesis, early cardiovascular development, and cell polarity. A canonical PB1-PB1 interaction, which involves heterodimerization of two PB1 domains, is required for the formation of macromolecular signaling complexes ensuring specificity and fidelity during cellular signaling. The interaction between two PB1 domain depends on the type of PB1. There are three types of PB1 domains: type I which contains an OPCA motif, acidic aminoacid cluster, type II which contains a basic cluster, and type I/II which contains both an OPCA motif and a basic cluster. Interactions of PB1 domains with other protein domains have been described as noncanonical PB1-interactions.
Probab=79.84 E-value=5 Score=33.54 Aligned_cols=39 Identities=23% Similarity=0.342 Sum_probs=33.4
Q ss_pred EEe-CCEEEEEEEcCCCCHHHHHHHHhcccCCCccCcEEec
Q 018493 60 VKY-GSIYHEIHINSQATFGELKKLLTGPTGLHHEDQKLIY 99 (355)
Q Consensus 60 VK~-gg~~~~V~V~~~sTVgdLK~~I~e~TGVppe~QKLIy 99 (355)
+.| ||.+.-+.|+.+.++.+|+.+|++.++++.. ..|=|
T Consensus 17 l~Y~GG~tr~i~V~r~~s~~el~~kl~~~~~~~~~-~~lky 56 (97)
T cd06410 17 LRYVGGETRIVSVDRSISFKELVSKLSELFGAGVV-VTLKY 56 (97)
T ss_pred EEEcCCceEEEEEcCCCCHHHHHHHHHHHhCCCCc-eEEEE
Confidence 455 7899999999999999999999999999876 55544
No 95
>cd06411 PB1_p51 The PB1 domain is present in the p51 protein, a homolog of the p67 protein. p51 plays an important role in NADPH oxidase activation during phagosytosis. The PB1 domain is a modular domain mediating specific protein-protein interaction in many critical cell processes such as osteoclastogenesis, angiogenesis, early cardiovascular development, and cell polarity. A canonical PB1-PB1 interaction, which involves heterodimerization of two PB1 domains, is required for the formation of macromolecular signaling complexes ensuring specificity and fidelity during cellular signaling. The interaction between two PB1 domain depends on the type of PB1. There are three types of PB1 domains: type I which contains an OPCA motif, acidic aminoacid cluster, type II which contains a basic cluster, and type I/II which contains both an OPCA motif and a basic cluster. Interactions of PB1 domains with other protein domains have been described as noncanonical PB1-interactions. The PB1 domain mo
Probab=77.08 E-value=4.5 Score=32.89 Aligned_cols=37 Identities=16% Similarity=0.222 Sum_probs=33.1
Q ss_pred EEEEEEcCCCCHHHHHHHHhcccCCCccCcEEeccCc
Q 018493 66 YHEIHINSQATFGELKKLLTGPTGLHHEDQKLIYKDK 102 (355)
Q Consensus 66 ~~~V~V~~~sTVgdLK~~I~e~TGVppe~QKLIykGK 102 (355)
++.|.+++..++.+|..+|+++..++++.-+|-|+-.
T Consensus 8 TVai~v~~g~~y~~L~~~ls~kL~l~~~~~~LSY~~~ 44 (78)
T cd06411 8 TVALRAPRGADVSSLRALLSQALPQQAQRGQLSYRAP 44 (78)
T ss_pred EEEEEccCCCCHHHHHHHHHHHhcCChhhcEEEecCC
Confidence 3567788999999999999999999999999999754
No 96
>cd06397 PB1_UP1 Uncharacterized protein 1. The PB1 domain is a modular domain mediating specific protein-protein interaction which play a role in many critical cell processes, such as osteoclastogenesis, angiogenesis, early cardiovascular development, and cell polarity. A canonical PB1-PB1 interaction, which involves heterodimerization of two PB1 domain, is required for the formation of macromolecular signaling complexes ensuring specificity and fidelity during cellular signaling. The interaction between two PB1 domain depends on the type of PB1. There are three types of PB1 domains: type I which contains an OPCA motif, acidic aminoacid cluster, type II which contains a basic cluster, and type I/II which contains both an OPCA motif and a basic cluster. Interactions of PB1 domains with other protein domains have been described as noncanonical PB1-interactions.
Probab=76.32 E-value=5 Score=32.95 Aligned_cols=44 Identities=14% Similarity=0.117 Sum_probs=38.7
Q ss_pred eEEEEEeCCEEEEEEEcCCCCHHHHHHHHhcccCCCccCcEEec
Q 018493 56 IRVRVKYGSIYHEIHINSQATFGELKKLLTGPTGLHHEDQKLIY 99 (355)
Q Consensus 56 I~V~VK~gg~~~~V~V~~~sTVgdLK~~I~e~TGVppe~QKLIy 99 (355)
++.+|++++...-+.++..-|+..|+++|+....+|+...-|-|
T Consensus 1 ~~fKv~~~g~~RRf~~~~~pt~~~L~~kl~~Lf~lp~~~~~vtY 44 (82)
T cd06397 1 TQFKSSFLGDTRRIVFPDIPTWEALASKLENLYNLPEIKVGVTY 44 (82)
T ss_pred CeEEEEeCCceEEEecCCCccHHHHHHHHHHHhCCChhHeEEEE
Confidence 36789999999999999999999999999999999987655555
No 97
>PF12754 Blt1: Cell-cycle control medial ring component; InterPro: IPR024737 During size-dependent cell cycle transitions controlled by the ubiquitous cyclin-dependent kinase Cdk1, Blt1 has been shown to co-localise with Cdr2 in the medial interphase nodes, as well as with Mid1 which was previously shown to localise to similar interphase structures. Physical interactions between Blt1-Mid1, Blt1-Cdr2 and Cdr2-Mid1 were detected, indicating that medial cortical nodes are formed by the ordered, Cdr2-dependent assembly of multiple interacting proteins during interphase[].; PDB: 2LO0_A.
Probab=75.28 E-value=0.92 Score=45.30 Aligned_cols=64 Identities=22% Similarity=0.225 Sum_probs=0.0
Q ss_pred CCeeEEEEEeCC-EEEEEEEc---C--CCCHHHHHHHHhc----------ccCCCccCcE-----EeccCcccCCchhhh
Q 018493 53 PPTIRVRVKYGS-IYHEIHIN---S--QATFGELKKLLTG----------PTGLHHEDQK-----LIYKDKERDSKAFLD 111 (355)
Q Consensus 53 ~~~I~V~VK~gg-~~~~V~V~---~--~sTVgdLK~~I~e----------~TGVppe~QK-----LIykGK~ldD~~tLs 111 (355)
...|+|.+|.-. -..+|.++ + +.+|.|||..+++ .++||.+..| |+|+-|.+-|..+|.
T Consensus 76 ~~sItV~Lks~rnp~l~i~L~~~~plattSv~dlk~~v~~rv~~~~~~~~~~~vp~dKik~~~~~lL~~kkPv~~~ktl~ 155 (309)
T PF12754_consen 76 SKSITVHLKSLRNPPLDISLPNVPPLATTSVQDLKDAVQQRVHPSQATYDETRVPLDKIKNFRCRLLYKKKPVGDSKTLA 155 (309)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred CceEEEEeecCCCCCceeEeCCCCcCCcCcHHHHHHHHHhhhcccccccccccCCHHHhhhhhhhheecCccCCCcCcHH
Confidence 345888877532 23334433 2 5799999999999 9999999999 999999988888777
Q ss_pred hcCCC
Q 018493 112 VVGVK 116 (355)
Q Consensus 112 ~~GIK 116 (355)
+..-.
T Consensus 156 e~l~~ 160 (309)
T PF12754_consen 156 EVLAD 160 (309)
T ss_dssp -----
T ss_pred HHHhc
Confidence 66443
No 98
>PRK06488 sulfur carrier protein ThiS; Validated
Probab=71.13 E-value=18 Score=27.20 Aligned_cols=59 Identities=7% Similarity=-0.022 Sum_probs=41.2
Q ss_pred EEEeCCEEEEEEEcCCCCHHHHHHHHhcccCCCccCcEEeccCcccCCchhhhhcCCCCCCEEEEee
Q 018493 59 RVKYGSIYHEIHINSQATFGELKKLLTGPTGLHHEDQKLIYKDKERDSKAFLDVVGVKDKSKLVLVE 125 (355)
Q Consensus 59 ~VK~gg~~~~V~V~~~sTVgdLK~~I~e~TGVppe~QKLIykGK~ldD~~tLs~~GIKdgSkImLv~ 125 (355)
+|.-+++.+++ + ..|+.+|...+ +++++...+-++|.... .....+.-+++||+|-++.
T Consensus 2 ~i~~Ng~~~~~--~-~~tl~~Ll~~l----~~~~~~vavavN~~iv~-~~~~~~~~L~dgD~Ieiv~ 60 (65)
T PRK06488 2 KLFVNGETLQT--E-ATTLALLLAEL----DYEGNWLATAVNGELVH-KEARAQFVLHEGDRIEILS 60 (65)
T ss_pred EEEECCeEEEc--C-cCcHHHHHHHc----CCCCCeEEEEECCEEcC-HHHcCccccCCCCEEEEEE
Confidence 34556666665 3 35899988775 66666666678888754 3445567899999998874
No 99
>TIGR01687 moaD_arch MoaD family protein, archaeal. Members of this family appear to be archaeal versions of MoaD, subunit 1 of molybdopterin converting factor. This model has been split from the bacterial/eukaryotic equivalog model TIGR01682 because the presence of two members of this family in a substantial number of archaeal species suggests that roles might not be interchangeable.
Probab=66.85 E-value=26 Score=27.61 Aligned_cols=57 Identities=19% Similarity=0.198 Sum_probs=37.9
Q ss_pred EEEEEEEcCCCCHHHHHHHHhcccC-----CCc------cCcEEeccCcccCCchhhhhcCCCCCCEEEEee
Q 018493 65 IYHEIHINSQATFGELKKLLTGPTG-----LHH------EDQKLIYKDKERDSKAFLDVVGVKDKSKLVLVE 125 (355)
Q Consensus 65 ~~~~V~V~~~sTVgdLK~~I~e~TG-----Vpp------e~QKLIykGK~ldD~~tLs~~GIKdgSkImLv~ 125 (355)
....|+++ ..||.+|.+.|.+... +-. ....+..+|+..+.+.. .-|++|+.|.++.
T Consensus 16 ~~~~v~~~-~~tv~~l~~~l~~~~p~~~~~~l~~~~~~~~~~~v~vN~~~v~~~~~---~~l~dgdev~i~P 83 (88)
T TIGR01687 16 KSEEIEIE-GKTVGDLLNELMARYPKEFSELFKEGLGLVPNVIILVNGRNVDWGLG---TELKDGDVVAIFP 83 (88)
T ss_pred ceEEEEeC-CCCHHHHHHHHHHHCcHHHHHhCccCCcccccEEEEECCEecCccCC---CCCCCCCEEEEeC
Confidence 34566676 7899999999987753 111 12445567766543321 5789999999874
No 100
>cd00565 ThiS ThiaminS ubiquitin-like sulfur carrier protein. ThiS (ThiaminS) is a sulfur carrier protein involved in thiamin biosynthesis in bacteria. The ThiS fold, like those of two closely related proteins MoaD and Urm1, is similar to that of ubiquitin although there is little or no sequence similarity.
Probab=66.81 E-value=15 Score=27.62 Aligned_cols=53 Identities=17% Similarity=0.201 Sum_probs=39.4
Q ss_pred EEEEcCCCCHHHHHHHHhcccCCCccCcEEeccCcccCCchhhhhcCCCCCCEEEEee
Q 018493 68 EIHINSQATFGELKKLLTGPTGLHHEDQKLIYKDKERDSKAFLDVVGVKDKSKLVLVE 125 (355)
Q Consensus 68 ~V~V~~~sTVgdLK~~I~e~TGVppe~QKLIykGK~ldD~~tLs~~GIKdgSkImLv~ 125 (355)
.++++...|+.+|.+.+ +++++...+.++|+....+ ..+..-|++||+|-++.
T Consensus 8 ~~~~~~~~tv~~ll~~l----~~~~~~i~V~vNg~~v~~~-~~~~~~L~~gD~V~ii~ 60 (65)
T cd00565 8 PREVEEGATLAELLEEL----GLDPRGVAVALNGEIVPRS-EWASTPLQDGDRIEIVT 60 (65)
T ss_pred EEEcCCCCCHHHHHHHc----CCCCCcEEEEECCEEcCHH-HcCceecCCCCEEEEEE
Confidence 34567788999998876 4777888888999875433 23445699999998874
No 101
>PF02017 CIDE-N: CIDE-N domain; InterPro: IPR003508 This domain consists of caspase-activated (CAD) nucleases, which induce DNA fragmentation and chromatin condensation during apoptosis, and the cell death activator proteins CIDE-A and CIDE-B, which are inhibitors of CAD nuclease. The two proteins interact through the region defined by the method signatures.; GO: 0006915 apoptosis, 0005622 intracellular; PDB: 1IBX_A 2EEL_A 1F2R_I 1C9F_A 1D4B_A.
Probab=65.62 E-value=18 Score=29.36 Aligned_cols=59 Identities=20% Similarity=0.344 Sum_probs=43.5
Q ss_pred CCEEEEEEEcCCCCHHHHHHHHhcccCCCccCcEEec--cCcccCCchhhhhcCCCCCCEEEEeec
Q 018493 63 GSIYHEIHINSQATFGELKKLLTGPTGLHHEDQKLIY--KDKERDSKAFLDVVGVKDKSKLVLVED 126 (355)
Q Consensus 63 gg~~~~V~V~~~sTVgdLK~~I~e~TGVppe~QKLIy--kGK~ldD~~tLs~~GIKdgSkImLv~~ 126 (355)
...+|-|-. .++.||+.+..+.++|+.+.-+|+. -|-+.+|++++..+ .++..+|++..
T Consensus 12 r~~k~Gv~A---~sL~eL~~K~~~~l~~~~~~~~lvL~eDGT~VddEeyF~tL--p~nT~lm~L~~ 72 (78)
T PF02017_consen 12 RSVKKGVAA---SSLEELLEKACDKLQLPEEPVRLVLEEDGTEVDDEEYFQTL--PDNTVLMLLEK 72 (78)
T ss_dssp SSCEEEEEE---SSHHHHHHHHHHHHT-SSSTCEEEETTTTCBESSCHHHCCS--SSSEEEEEEES
T ss_pred CCceEeEEc---CCHHHHHHHHHHHhCCCCcCcEEEEeCCCcEEccHHHHhhC--CCCCEEEEECC
Confidence 344444433 5999999999999999977666653 67779999888765 77888888763
No 102
>TIGR01682 moaD molybdopterin converting factor, subunit 1, non-archaeal. The C-terminal Gly-Gly of this model is critical to function.
Probab=65.43 E-value=24 Score=27.51 Aligned_cols=55 Identities=13% Similarity=0.186 Sum_probs=38.8
Q ss_pred EEEEEEcCC-CCHHHHHHHHhcccC-CCc--cCcEEeccCcccCCchhhhhcCCCCCCEEEEee
Q 018493 66 YHEIHINSQ-ATFGELKKLLTGPTG-LHH--EDQKLIYKDKERDSKAFLDVVGVKDKSKLVLVE 125 (355)
Q Consensus 66 ~~~V~V~~~-sTVgdLK~~I~e~TG-Vpp--e~QKLIykGK~ldD~~tLs~~GIKdgSkImLv~ 125 (355)
...++++.. +|+.+|.+.|.+..+ +-. ....+..+|+...+ +.-|++|+.|.++.
T Consensus 17 ~~~~~~~~~~~tv~~L~~~L~~~~p~l~~~~~~~~v~vn~~~v~~-----~~~l~dgDevai~P 75 (80)
T TIGR01682 17 EETLELPDESTTVGELKEHLAKEGPELAASRGQVMVAVNEEYVTD-----DALLNEGDEVAFIP 75 (80)
T ss_pred eEEEECCCCCcCHHHHHHHHHHhCchhhhhccceEEEECCEEcCC-----CcCcCCCCEEEEeC
Confidence 346778876 899999999988764 211 22345566766553 56889999999874
No 103
>cd06404 PB1_aPKC PB1 domain is an essential modular domain of the atypical protein kinase C (aPKC) which in complex with Par6 and Par3 proteins is crucial for establishment of apical-basal polarity of animal cells. PB1 domain is a modular domain mediating specific protein-protein interaction which play roles in many critical cell processes. A canonical PB1-PB1 interaction, which involves heterodimerization of two PB1 domains, is required for the formation of macromolecular signaling complexes ensuring specificity and fidelity during cellular signaling. The interaction between two PB1 domain depends on the type of PB1. There are three types of PB1 domains: type I which contains an OPCA motif, acidic aminoacid cluster, type II which contains a basic cluster, and type I/II which contains both an OPCA motif and a basic cluster. Interactions of PB1 domains with other protein domains have been described as noncanonical PB1-interactions. The PB1 domain module is conserved in amoebas, fungi,
Probab=63.93 E-value=14 Score=30.42 Aligned_cols=45 Identities=18% Similarity=0.259 Sum_probs=37.7
Q ss_pred eEEEEEeCCEEEEEEEcCCCCHHHHHHHHhcccCCCcc-CcEEecc
Q 018493 56 IRVRVKYGSIYHEIHINSQATFGELKKLLTGPTGLHHE-DQKLIYK 100 (355)
Q Consensus 56 I~V~VK~gg~~~~V~V~~~sTVgdLK~~I~e~TGVppe-~QKLIyk 100 (355)
|+|++.++|..+...+++..|+.+|.+.+.+......+ -..+-|.
T Consensus 1 i~~K~~y~gdi~it~~d~~~s~e~L~~~v~~~c~~~~~q~ft~kw~ 46 (83)
T cd06404 1 VRVKAAYNGDIMITSIDPSISLEELCNEVRDMCRFHNDQPFTLKWI 46 (83)
T ss_pred CeEEEEecCcEEEEEcCCCcCHHHHHHHHHHHhCCCCCCcEEEEEE
Confidence 67899999999999999999999999999999998754 3444444
No 104
>PF14533 USP7_C2: Ubiquitin-specific protease C-terminal; PDB: 2YLM_A.
Probab=63.21 E-value=29 Score=32.46 Aligned_cols=48 Identities=19% Similarity=0.221 Sum_probs=30.4
Q ss_pred EEEEEEcCCCCHHHHHHHHhcccCCCcc-CcEE----eccCcc---cCCchhhhhc
Q 018493 66 YHEIHINSQATFGELKKLLTGPTGLHHE-DQKL----IYKDKE---RDSKAFLDVV 113 (355)
Q Consensus 66 ~~~V~V~~~sTVgdLK~~I~e~TGVppe-~QKL----IykGK~---ldD~~tLs~~ 113 (355)
.|.+-|+.+.||+||-..|....+++.+ ..+| ++.||. +..+..|..+
T Consensus 35 ~~~~~vpk~~tV~Dll~~l~~k~~~~~~~~~~lrl~ev~~~ki~~~~~~d~~i~~l 90 (213)
T PF14533_consen 35 EYELLVPKTGTVSDLLEELQKKVGFSEEGTGKLRLWEVSNHKIYKILSEDEPISSL 90 (213)
T ss_dssp EEEE--BTT-BHHHHHHHHHTT----TT----EEEEEEETTEEEEEE-TTSBGGGS
T ss_pred EEEEEECCCCCHHHHHHHHHHHcCCCcCCcCcEEEEEeECCEEEeecCCCCchhhc
Confidence 5778899999999999999999999875 3444 367776 6777888877
No 105
>cd06539 CIDE_N_A CIDE_N domain of CIDE-A proteins. The CIDE_N (cell death-inducing DFF45-like effector, N-terminal) domain is found at the N-terminus of the CIDE (cell death-inducing DFF45-like effector) proteins. These proteins are associated with the chromatin condensation and DNA fragmentation events of apoptosis; the CIDE_N domain is thought to regulate the activity of the CAD/DFF40, ICAD/DFF45, and CIDE nucleases during apoptosis. The CIDE protein family includes 3 members: CIDE-A, CIDE-B, and FSP27(CIDE-C). Based on sequence similarity with DFF40 and DFF45, the CIDE proteins were initially characterized as mitochondrial activators of apoptosis. However, strong metabolic phenotypes of mice lacking CIDE-A and CIDE-B indicated that this family may play critical roles in energy balance.
Probab=61.44 E-value=36 Score=27.73 Aligned_cols=50 Identities=14% Similarity=0.193 Sum_probs=40.9
Q ss_pred CCHHHHHHHHhcccCCCccCcEE--eccCcccCCchhhhhcCCCCCCEEEEeec
Q 018493 75 ATFGELKKLLTGPTGLHHEDQKL--IYKDKERDSKAFLDVVGVKDKSKLVLVED 126 (355)
Q Consensus 75 sTVgdLK~~I~e~TGVppe~QKL--IykGK~ldD~~tLs~~GIKdgSkImLv~~ 126 (355)
.++.||+.+..+..+++...-+| .--|-+.||++++..+ .++..+|++..
T Consensus 21 ~sL~EL~~K~~~~l~~~~~~~~lvL~eDGT~Vd~EeyF~~L--pdnT~lm~L~~ 72 (78)
T cd06539 21 SSLQELISKTLDALVITSGLVTLVLEEDGTVVDTEEFFQTL--GDNTHFMVLEK 72 (78)
T ss_pred cCHHHHHHHHHHHhCCCCCCcEEEEeCCCCEEccHHHHhhC--CCCCEEEEECC
Confidence 48999999999999998655554 4578889999998875 78888888863
No 106
>cd01615 CIDE_N CIDE_N domain, found at the N-terminus of the CIDE (cell death-inducing DFF45-like effector) proteins, as well as CAD nuclease (caspase-activated DNase/DNA fragmentation factor, DFF40) and its inhibitor, ICAD(DFF45). These proteins are associated with the chromatin condensation and DNA fragmentation events of apoptosis; the CIDE_N domain is thought to regulate the activity of ICAD/DFF45, and the CAD/DFF40 and CIDE nucleases during apoptosis. The CIDE-N domain is also found in the FSP27/CIDE-C protein.
Probab=61.37 E-value=37 Score=27.62 Aligned_cols=50 Identities=20% Similarity=0.297 Sum_probs=40.0
Q ss_pred CCHHHHHHHHhcccCCCccCcEEe--ccCcccCCchhhhhcCCCCCCEEEEeec
Q 018493 75 ATFGELKKLLTGPTGLHHEDQKLI--YKDKERDSKAFLDVVGVKDKSKLVLVED 126 (355)
Q Consensus 75 sTVgdLK~~I~e~TGVppe~QKLI--ykGK~ldD~~tLs~~GIKdgSkImLv~~ 126 (355)
.++.+|+.+..+.++++...-+|+ --|-+.+|++++..+ .++..+|++..
T Consensus 21 ~sL~eL~~K~~~~l~l~~~~~~lvL~eDGTeVddEeYF~tL--p~nT~l~~l~~ 72 (78)
T cd01615 21 SSLEELLSKACEKLKLPSAPVTLVLEEDGTEVDDEEYFQTL--PDNTVLMLLEP 72 (78)
T ss_pred CCHHHHHHHHHHHcCCCCCCeEEEEeCCCcEEccHHHHhcC--CCCcEEEEECC
Confidence 389999999999999976555554 467789999998875 77888888763
No 107
>PRK05863 sulfur carrier protein ThiS; Provisional
Probab=61.18 E-value=36 Score=25.85 Aligned_cols=58 Identities=14% Similarity=0.139 Sum_probs=40.1
Q ss_pred EEeCCEEEEEEEcCCCCHHHHHHHHhcccCCCccCcEEeccCcccCCchhhhhcCCCCCCEEEEee
Q 018493 60 VKYGSIYHEIHINSQATFGELKKLLTGPTGLHHEDQKLIYKDKERDSKAFLDVVGVKDKSKLVLVE 125 (355)
Q Consensus 60 VK~gg~~~~V~V~~~sTVgdLK~~I~e~TGVppe~QKLIykGK~ldD~~tLs~~GIKdgSkImLv~ 125 (355)
|.-.|+.+ .++...|+.+|=.. .++++....+.+.|.....+.. ..+ +++||+|-++.
T Consensus 3 i~vNG~~~--~~~~~~tl~~ll~~----l~~~~~~vav~~N~~iv~r~~~-~~~-L~~gD~ieIv~ 60 (65)
T PRK05863 3 VVVNEEQV--EVDEQTTVAALLDS----LGFPEKGIAVAVDWSVLPRSDW-ATK-LRDGARLEVVT 60 (65)
T ss_pred EEECCEEE--EcCCCCcHHHHHHH----cCCCCCcEEEEECCcCcChhHh-hhh-cCCCCEEEEEe
Confidence 34455544 45677888877655 5889889999999996432222 236 99999998874
No 108
>PF14453 ThiS-like: ThiS-like ubiquitin
Probab=60.23 E-value=31 Score=26.42 Aligned_cols=48 Identities=19% Similarity=0.275 Sum_probs=37.8
Q ss_pred EEEEcCCCCHHHHHHHHhcccCCCccCcEEeccCcccCCchhhhhcCCCCCCEEEEeec
Q 018493 68 EIHINSQATFGELKKLLTGPTGLHHEDQKLIYKDKERDSKAFLDVVGVKDKSKLVLVED 126 (355)
Q Consensus 68 ~V~V~~~sTVgdLK~~I~e~TGVppe~QKLIykGK~ldD~~tLs~~GIKdgSkImLv~~ 126 (355)
.+++....|+.+||..+..... -+||+|=...++ +-+++||.|.++.+
T Consensus 9 ~~~~~~~~tl~~lr~~~k~~~D------I~I~NGF~~~~d-----~~L~e~D~v~~Ikk 56 (57)
T PF14453_consen 9 EIETEENTTLFELRKESKPDAD------IVILNGFPTKED-----IELKEGDEVFLIKK 56 (57)
T ss_pred EEEcCCCcCHHHHHHhhCCCCC------EEEEcCcccCCc-----cccCCCCEEEEEeC
Confidence 4567788899999999877555 579999886544 45789999999863
No 109
>TIGR00244 transcriptional regulator NrdR. Members of this almost entirely bacterial family contain an ATP cone domain (PFAM:PF03477). There is never more than one member per genome. Common gene symbols given include nrdR, ybaD, ribX and ytcG. The member from Streptomyces coelicolor is found upstream in the operon of the class II oxygen-independent ribonucleotide reductase gene nrdJ and was shown to repress nrdJ expression. Many members of this family are found near genes for riboflavin biosynthesis in Gram-negative bacteria, suggesting a role in that pathway. However, a phylogenetic profiling study associates members of this family with the presence of a palindromic signal with consensus acaCwAtATaTwGtgt, termed the NrdR-box, an upstream element for most operons for ribonucleotide reductase of all three classes in bacterial genomes.
Probab=59.85 E-value=15 Score=33.14 Aligned_cols=36 Identities=22% Similarity=0.312 Sum_probs=24.7
Q ss_pred HHHHHHHHHhCCCcchhhHhhHHHHHHHHHHhccCCC
Q 018493 164 VSALESIITKGGKVAEKDVLNLIELLMNQLLKLDGIM 200 (355)
Q Consensus 164 v~~LE~~I~~g~Kv~eke~~~LsE~LMq~LLKLD~Ie 200 (355)
+..||..+...... |-.-..+.|++|..|-+||.|.
T Consensus 88 v~~Ie~~l~~~~~~-EI~S~~IGe~Vm~~L~~lD~VA 123 (147)
T TIGR00244 88 INHIEAQLRAQGER-EVPSELIGQMVMQYLKKLDEVA 123 (147)
T ss_pred HHHHHHHHHHcCCC-cccHHHHHHHHHHHHhhcCcch
Confidence 34455544443322 5556779999999999999993
No 110
>PF09379 FERM_N: FERM N-terminal domain ; InterPro: IPR018979 This domain is the N-terminal ubiquitin-like structural domain of the FERM domain. The FERM domain (F for 4.1 protein, E for ezrin, R for radixin and M for moesin) is a widespread protein module involved in localising proteins to the plasma membrane []. FERM domains are found in a number of cytoskeletal-associated proteins that associate with various proteins at the interface between the plasma membrane and the cytoskeleton. The FERM domain is located at the N terminus of the majority of FERM-containing proteins [, ], which includes: Band 4.1, which links the spectrin-actin cytoskeleton of erythrocytes to the plasma membrane. Ezrin, a component of the undercoat of the microvilli plasma membrane. Moesin, which is probably involved in binding major cytoskeletal structures to the plasma membrane. Radixin, which is involved in the binding of the barbed end of actin filaments to the plasma membrane in the undercoat of the cell- to-cell adherens junction. Talin, a cytoskeletal protein concentrated in regions of cell-substratum contact and, in lymphocytes, of cell-cell contacts. Filopodin, a slime mold protein that binds actin and which is involved in the control of cell motility and chemotaxis. Merlin (or schwannomin). Protein NBL4. Unconventional myosins X, VIIa and XV, which are mutated in congenital deafness. Focal-adhesion kinases (FAKs), cytoplasmic protein tyrosine kinases involved in signalling through integrins. Janus tyrosine kinases (JAKs), cytoplasmic tyrosine kinases that are non-covalently associated with the cytoplasmic tails of receptors for cytokines or polypeptidic hormones. Non-receptor tyrosine-protein kinase TYK2. Protein-tyrosine phosphatases PTPN3 and PTPN4, enzyme that appear to act at junctions between the membrane and the cytoskeleton. Protein-tyrosine phosphatases PTPN14 and PTP-D1, PTP-RL10 and PTP2E. Caenorhabditis elegans protein phosphatase ptp-1. Ezrin, moesin, and radixin are highly related proteins (ERM protein family), but the other proteins in which the FERM domain is found do not share any region of similarity outside of this domain. ERM proteins are made of three domains, the FERM domain, a central helical domain and a C-terminal tail domain, which binds F-actin. The amino-acid sequence of the FERM domain is highly conserved among ERM proteins and is responsible for membrane association by direct binding to the cytoplasmic domain or tail of integral membrane proteins. ERM proteins are regulated by an intramolecular association of the FERM and C-terminal tail domains that masks their binding sites for other molecules. For cytoskeleton-membrane cross-linking, the dormant molecules becomes activated and the FERM domain attaches to the membrane by binding specific membrane proteins, while the last 34 residues of the tail bind actin filaments. Aside from binding to membranes, the activated FERM domain of ERM proteins can also bind the guanine nucleotide dissociation inhibitor of Rho GTPase (RhoDGI), which suggests that in addition to functioning as a cross-linker, ERM proteins may influence Rho signalling pathways. The crystal structure of the FERM domain reveals that it is composed of three structural modules (F1, F2, and F3) that together form a compact clover-shaped structure []. The FERM domain has also been called the amino-terminal domain, the 30kDa domain, 4.1N30, the membrane-cytoskeletal-linking domain, the ERM-like domain, the ezrin-like domain of the band 4.1 superfamily, the conserved N-terminal region, and the membrane attachment domain [].; PDB: 1EF1_B 1SGH_A 1E5W_A 2KC2_A 2KMA_A 3IVF_A 1H4R_B 3U8Z_A 1ISN_A 3BIN_A ....
Probab=59.70 E-value=26 Score=26.77 Aligned_cols=54 Identities=17% Similarity=0.136 Sum_probs=42.6
Q ss_pred CCEEEEEEEcCCCCHHHHHHHHhcccCCCcc-CcEEec----cCcc--cCCchhhhhcCCC
Q 018493 63 GSIYHEIHINSQATFGELKKLLTGPTGLHHE-DQKLIY----KDKE--RDSKAFLDVVGVK 116 (355)
Q Consensus 63 gg~~~~V~V~~~sTVgdLK~~I~e~TGVppe-~QKLIy----kGK~--ldD~~tLs~~GIK 116 (355)
.+....+.|+..+|+.+|=+.|+...||... -.-|.| .|.. ++.+.+|.....+
T Consensus 5 D~~~~~~~v~~~~t~~~l~~~v~~~l~l~e~~~FgL~~~~~~~~~~~wL~~~k~l~~q~~~ 65 (80)
T PF09379_consen 5 DGTTKTFEVDPKTTGQDLLEQVCDKLGLKEKEYFGLQYQVDKDGEHHWLDLDKKLKKQLKK 65 (80)
T ss_dssp SEEEEEEEEETTSBHHHHHHHHHHHHTTSSGGGEEEEE-EBTTSSEEEE-SSSBGGGSTBT
T ss_pred CCCcEEEEEcCCCcHHHHHHHHHHHcCCCCccEEEEEEeecCCCcceeccCcccHHHHcCC
Confidence 3567889999999999999999999999854 345667 3333 8889999999887
No 111
>PRK01777 hypothetical protein; Validated
Probab=59.54 E-value=62 Score=26.96 Aligned_cols=62 Identities=19% Similarity=0.247 Sum_probs=44.0
Q ss_pred eeEEEEEeC--C--EEEEEEEcCCCCHHHHHHHHhcccCCCcc-------CcEEeccCcccCCchhhhhcCCCCCCEEEE
Q 018493 55 TIRVRVKYG--S--IYHEIHINSQATFGELKKLLTGPTGLHHE-------DQKLIYKDKERDSKAFLDVVGVKDKSKLVL 123 (355)
Q Consensus 55 ~I~V~VK~g--g--~~~~V~V~~~sTVgdLK~~I~e~TGVppe-------~QKLIykGK~ldD~~tLs~~GIKdgSkImL 123 (355)
+|+|.|.|. . ....++++..+||.++=..+ ||+.+ .-++.-.|+..+. +.-|++|+.|-+
T Consensus 3 ~i~v~V~ya~~~~~~~~~l~vp~GtTv~dal~~s----gi~~~~pei~~~~~~vgI~Gk~v~~-----d~~L~dGDRVeI 73 (95)
T PRK01777 3 KIRVEVVYALPERQYLQRLTLQEGATVEEAIRAS----GLLELRTDIDLAKNKVGIYSRPAKL-----TDVLRDGDRVEI 73 (95)
T ss_pred eeEEEEEEECCCceEEEEEEcCCCCcHHHHHHHc----CCCccCcccccccceEEEeCeECCC-----CCcCCCCCEEEE
Confidence 688888873 2 33567899999999987765 55544 2366667777543 336899999998
Q ss_pred ee
Q 018493 124 VE 125 (355)
Q Consensus 124 v~ 125 (355)
..
T Consensus 74 yr 75 (95)
T PRK01777 74 YR 75 (95)
T ss_pred ec
Confidence 85
No 112
>PF10768 FliX: Class II flagellar assembly regulator; InterPro: IPR019704 The FliX protein is possibly a transient component of the flagellum that is required for the assembly process. FliX may contribute to the targeting or assembly of the P- and L-ring protein monomers at the cell pole. The family carries a potential N-terminal signal sequence and at least one transmembrane domain indicating that it might function either in or in association with the cell membrane [].
Probab=58.91 E-value=15 Score=32.91 Aligned_cols=35 Identities=37% Similarity=0.519 Sum_probs=29.1
Q ss_pred HHHhccCCCCChhhHHHHHHHHHHHHHHHHHHHHhhhh
Q 018493 192 QLLKLDGIMADGDVKLQRKMQVRRVQKYVETLDMLKIK 229 (355)
Q Consensus 192 ~LLKLD~IeaeGdaR~qRK~~VkrVQ~~Le~LD~lk~~ 229 (355)
.||.|=+| .|.-..||..|+|=..+||.||.||+-
T Consensus 55 aLLALQ~v---dd~~erRrRav~Rg~~lLD~Ld~Lk~~ 89 (139)
T PF10768_consen 55 ALLALQEV---DDPTERRRRAVRRGHDLLDVLDELKIG 89 (139)
T ss_pred HHHHHhhc---cChHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 47888887 345666999999999999999999975
No 113
>PRK05659 sulfur carrier protein ThiS; Validated
Probab=58.27 E-value=43 Score=24.99 Aligned_cols=60 Identities=7% Similarity=0.060 Sum_probs=41.6
Q ss_pred EEEeCCEEEEEEEcCCCCHHHHHHHHhcccCCCccCcEEeccCcccCCchhhhhcCCCCCCEEEEee
Q 018493 59 RVKYGSIYHEIHINSQATFGELKKLLTGPTGLHHEDQKLIYKDKERDSKAFLDVVGVKDKSKLVLVE 125 (355)
Q Consensus 59 ~VK~gg~~~~V~V~~~sTVgdLK~~I~e~TGVppe~QKLIykGK~ldD~~tLs~~GIKdgSkImLv~ 125 (355)
+|...|+. ++++...|+.+|-.. .|+++..--+.+.|....-.. ..+.=|++|++|-++.
T Consensus 2 ~i~vNG~~--~~~~~~~tl~~lL~~----l~~~~~~vav~vNg~iv~r~~-~~~~~l~~gD~vei~~ 61 (66)
T PRK05659 2 NIQLNGEP--RELPDGESVAALLAR----EGLAGRRVAVEVNGEIVPRSQ-HASTALREGDVVEIVH 61 (66)
T ss_pred EEEECCeE--EEcCCCCCHHHHHHh----cCCCCCeEEEEECCeEeCHHH-cCcccCCCCCEEEEEE
Confidence 34555654 456777898887655 588888888889987644332 3444589999998873
No 114
>TIGR01683 thiS thiamine biosynthesis protein ThiS. This model represents ThiS, a small thiamine-biosynthesis protein related to MoaD, a molybdenum cofactor biosynthesis protein. Both proteins are involved in sulfur transfer. ThiS has a conserved Gly-Gly C-terminus that is modified, in reactions requiring ThiI, ThiF, IscS, and a sulfur atom from Cys, into the thiocarboxylate that provides the sulfur for thiazole biosynthesis.
Probab=58.16 E-value=30 Score=25.96 Aligned_cols=53 Identities=15% Similarity=0.187 Sum_probs=38.0
Q ss_pred EEEEcCCCCHHHHHHHHhcccCCCccCcEEeccCcccCCchhhhhcCCCCCCEEEEee
Q 018493 68 EIHINSQATFGELKKLLTGPTGLHHEDQKLIYKDKERDSKAFLDVVGVKDKSKLVLVE 125 (355)
Q Consensus 68 ~V~V~~~sTVgdLK~~I~e~TGVppe~QKLIykGK~ldD~~tLs~~GIKdgSkImLv~ 125 (355)
.++++...|+.+|.+.+ +++++..-+.++|.....+ ....+-|++||+|-++.
T Consensus 7 ~~~~~~~~tv~~ll~~l----~~~~~~v~v~vN~~iv~~~-~~~~~~L~~gD~veii~ 59 (64)
T TIGR01683 7 PVEVEDGLTLAALLESL----GLDPRRVAVAVNGEIVPRS-EWDDTILKEGDRIEIVT 59 (64)
T ss_pred EEEcCCCCcHHHHHHHc----CCCCCeEEEEECCEEcCHH-HcCceecCCCCEEEEEE
Confidence 34567788999998875 5677777777888875322 23456799999998874
No 115
>smart00266 CAD Domains present in proteins implicated in post-mortem DNA fragmentation.
Probab=58.00 E-value=48 Score=26.77 Aligned_cols=49 Identities=16% Similarity=0.292 Sum_probs=40.0
Q ss_pred CCHHHHHHHHhcccCCCccCcEEe--ccCcccCCchhhhhcCCCCCCEEEEee
Q 018493 75 ATFGELKKLLTGPTGLHHEDQKLI--YKDKERDSKAFLDVVGVKDKSKLVLVE 125 (355)
Q Consensus 75 sTVgdLK~~I~e~TGVppe~QKLI--ykGK~ldD~~tLs~~GIKdgSkImLv~ 125 (355)
.++.+|+.+..+..+++...-+|. --|-+.+|++++..+ .++..+|++.
T Consensus 19 ~sL~eL~~K~~~~l~l~~~~~~l~L~eDGT~VddEeyF~tL--p~nt~l~~L~ 69 (74)
T smart00266 19 SSLEELLSKVCDKLALPDSPVTLVLEEDGTIVDDEEYFQTL--PDNTELMALE 69 (74)
T ss_pred CCHHHHHHHHHHHhCCCCCCcEEEEecCCcEEccHHHHhcC--CCCcEEEEEc
Confidence 389999999999999997666663 367789999998865 7788888775
No 116
>cd06537 CIDE_N_B CIDE_N domain of CIDE-B proteins. The CIDE_N (cell death-inducing DFF45-like effector, N-terminal) domain is found at the N-terminus of the CIDE (cell death-inducing DFF45-like effector) proteins. These proteins are associated with the chromatin condensation and DNA fragmentation events of apoptosis; the CIDE_N domain is thought to regulate the activity of the CAD/DFF40, ICAD/DFF45 and CIDE nucleases during apoptosis. The CIDE protein family includes 3 members: CIDE-A, CIDE-B, and FSP27(CIDE-C). Based on sequence similarity with DFF40 and DFF45, CIDE proteins were initially characterized as mitochondrial activators of apoptosis. However, strong metabolic phenotypes of mice lacking CIDE-A and CIDE-B indicated that this family may play critical roles in energy balance.
Probab=55.57 E-value=50 Score=27.14 Aligned_cols=50 Identities=22% Similarity=0.238 Sum_probs=39.4
Q ss_pred CCHHHHHHHHhcccCCCcc-CcEEeccCcccCCchhhhhcCCCCCCEEEEeec
Q 018493 75 ATFGELKKLLTGPTGLHHE-DQKLIYKDKERDSKAFLDVVGVKDKSKLVLVED 126 (355)
Q Consensus 75 sTVgdLK~~I~e~TGVppe-~QKLIykGK~ldD~~tLs~~GIKdgSkImLv~~ 126 (355)
.++.||+.+..+..+++.. ..-|---|-+.||++++..+ .++..+|++..
T Consensus 21 ~sL~EL~~K~~~~L~~~~~~~lvLeeDGT~Vd~EeyF~tL--pdnT~lm~L~~ 71 (81)
T cd06537 21 ASLQELLAKALETLLLSGVLTLVLEEDGTAVDSEDFFELL--EDDTCLMVLEQ 71 (81)
T ss_pred cCHHHHHHHHHHHhCCCCceEEEEecCCCEEccHHHHhhC--CCCCEEEEECC
Confidence 4899999999999999733 33344567789999998875 78888998863
No 117
>PRK06083 sulfur carrier protein ThiS; Provisional
Probab=55.54 E-value=70 Score=26.00 Aligned_cols=64 Identities=3% Similarity=0.070 Sum_probs=45.6
Q ss_pred eeEEEEEeCCEEEEEEEcCCCCHHHHHHHHhcccCCCccCcEEeccCcccCCchhhhhcCCCCCCEEEEee
Q 018493 55 TIRVRVKYGSIYHEIHINSQATFGELKKLLTGPTGLHHEDQKLIYKDKERDSKAFLDVVGVKDKSKLVLVE 125 (355)
Q Consensus 55 ~I~V~VK~gg~~~~V~V~~~sTVgdLK~~I~e~TGVppe~QKLIykGK~ldD~~tLs~~GIKdgSkImLv~ 125 (355)
++.++|.-+|+.+ .++...|+.+|=+. .++++...-+-++|..+ +......+-|++||+|-++.
T Consensus 16 ~~~m~I~VNG~~~--~~~~~~tl~~LL~~----l~~~~~~vAVevNg~iV-pr~~w~~t~L~egD~IEIv~ 79 (84)
T PRK06083 16 MVLITISINDQSI--QVDISSSLAQIIAQ----LSLPELGCVFAINNQVV-PRSEWQSTVLSSGDAISLFQ 79 (84)
T ss_pred CceEEEEECCeEE--EcCCCCcHHHHHHH----cCCCCceEEEEECCEEe-CHHHcCcccCCCCCEEEEEE
Confidence 3455566666654 45677788887665 47777777777899876 34556777899999998874
No 118
>KOG2561 consensus Adaptor protein NUB1, contains UBA domain [Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms]
Probab=55.07 E-value=4.8 Score=42.45 Aligned_cols=74 Identities=20% Similarity=0.196 Sum_probs=58.2
Q ss_pred CCeeEEEEEe--CCE-EEEEEEcCCCCHHHHHHHHhcccCCCccCcEEeccCcccCCchhhhhcCCCCCCEEEEeec
Q 018493 53 PPTIRVRVKY--GSI-YHEIHINSQATFGELKKLLTGPTGLHHEDQKLIYKDKERDSKAFLDVVGVKDKSKLVLVED 126 (355)
Q Consensus 53 ~~~I~V~VK~--gg~-~~~V~V~~~sTVgdLK~~I~e~TGVppe~QKLIykGK~ldD~~tLs~~GIKdgSkImLv~~ 126 (355)
-.++.|+... ++. ...+.-.-+-|-.+|...|++..||+-...|.|..||++.-..+|.+-|++.+..+|++..
T Consensus 35 lat~~Vrlv~~~k~~~m~l~k~sL~i~Gselqa~iakklgi~enhvKci~~~Kils~~ktlaeQglk~nq~~mv~~~ 111 (568)
T KOG2561|consen 35 LATESVRLVFAGKGDRMNLKKCSLHITGSELQALIAKKLGIKENHVKCIINGKILSCRKTLAEQGLKINQELMVAVG 111 (568)
T ss_pred ccceeeEeccccccchhhhhhcccccccHHHHHHHHHHcCCchhhhheeeccceeecccchhhhhhhhhhHHHHHhc
Confidence 3556666554 331 1223333445788999999999999999999999999999999999999999999999865
No 119
>PF02597 ThiS: ThiS family; InterPro: IPR003749 ThiS (thiaminS) is a 66 aa protein involved in sulphur transfer. ThiS is coded in the thiCEFSGH operon in Escherichia coli. This family of proteins have two conserved Glycines at the COOH terminus. Thiocarboxylate is formed at the last G in the activation process. Sulphur is transferred from ThiI to ThiS in a reaction catalysed by IscS []. MoaD, a protein involved in sulphur transfer during molybdopterin synthesis, is about the same length and shows limited sequence similarity to ThiS. Both have the conserved GG at the COOH end.; PDB: 1JW9_D 1JWB_D 1JWA_D 3BII_D 1NVI_D 1FMA_D 1FM0_D 2QIE_G 2Q5W_D 2K5P_A ....
Probab=54.21 E-value=22 Score=26.91 Aligned_cols=58 Identities=12% Similarity=0.038 Sum_probs=43.7
Q ss_pred EEEEEEcCCCCHHHHHHHHhcccCC--CccCcEEeccCcccCCchhhhhcCCCCCCEEEEee
Q 018493 66 YHEIHINSQATFGELKKLLTGPTGL--HHEDQKLIYKDKERDSKAFLDVVGVKDKSKLVLVE 125 (355)
Q Consensus 66 ~~~V~V~~~sTVgdLK~~I~e~TGV--ppe~QKLIykGK~ldD~~tLs~~GIKdgSkImLv~ 125 (355)
...+.++...||++|.+.|.....- ....-.+..+|+..++ ...+.-|++|++|.++.
T Consensus 13 ~~~~~~~~~~tv~~ll~~l~~~~p~~~~~~~~~v~vN~~~v~~--~~~~~~l~~gD~V~i~p 72 (77)
T PF02597_consen 13 EEEIEVPEGSTVRDLLEALAERYPELALRDRVAVAVNGEIVPD--DGLDTPLKDGDEVAILP 72 (77)
T ss_dssp EEEEEESSTSBHHHHHHHHCHHTGGGHTTTTEEEEETTEEEGG--GTTTSBEETTEEEEEEE
T ss_pred CeEEecCCCCcHHHHHHHHHhhccccccCccEEEEECCEEcCC--ccCCcCcCCCCEEEEEC
Confidence 4567788899999999999876531 2255667788888766 36667789999999874
No 120
>PRK06944 sulfur carrier protein ThiS; Provisional
Probab=53.96 E-value=66 Score=23.84 Aligned_cols=58 Identities=9% Similarity=0.045 Sum_probs=37.1
Q ss_pred EEeCCEEEEEEEcCCCCHHHHHHHHhcccCCCccCcEEeccCcccCCchhhhhcCCCCCCEEEEee
Q 018493 60 VKYGSIYHEIHINSQATFGELKKLLTGPTGLHHEDQKLIYKDKERDSKAFLDVVGVKDKSKLVLVE 125 (355)
Q Consensus 60 VK~gg~~~~V~V~~~sTVgdLK~~I~e~TGVppe~QKLIykGK~ldD~~tLs~~GIKdgSkImLv~ 125 (355)
|.-.++. +.++...|+.+|-+.+. +. ....+.++|....... ..+.-+++||+|-++.
T Consensus 3 i~vNg~~--~~~~~~~tl~~ll~~l~----~~-~~~~v~vN~~~v~~~~-~~~~~L~~gD~vei~~ 60 (65)
T PRK06944 3 IQLNQQT--LSLPDGATVADALAAYG----AR-PPFAVAVNGDFVARTQ-HAARALAAGDRLDLVQ 60 (65)
T ss_pred EEECCEE--EECCCCCcHHHHHHhhC----CC-CCeEEEECCEEcCchh-cccccCCCCCEEEEEe
Confidence 4445553 45677789999988763 33 3355668887754322 2233489999998874
No 121
>cd06536 CIDE_N_ICAD CIDE_N domain of ICAD. The CIDE_N (cell death-inducing DFF45-like effector, N-terminal) domain is found at the N-terminus of the CAD nuclease (caspase-activated DNase/DNA fragmentation factor, DFF40) and its inhibitor, ICAD (DFF45). These proteins are associated with the chromatin condensation and DNA fragmentation events of apoptosis; the CIDE_N domain is thought to regulate the activity of the CAD/DFF40 and ICAD/DFF45 during apoptosis. In normal cells, DFF exists in the nucleus as a heterodimer composed of CAD/DFF40 as a latent nuclease and its chaperone and inhibitor subunit ICAD/DFF45. Apoptotic activation of caspase-3 results in the cleavage of DFF45/ICAD and release of active DFF40/CAD nuclease.
Probab=53.92 E-value=53 Score=26.88 Aligned_cols=50 Identities=14% Similarity=0.254 Sum_probs=39.2
Q ss_pred CCHHHHHHHHhcccCCCccC--cEE--eccCcccCCchhhhhcCCCCCCEEEEeec
Q 018493 75 ATFGELKKLLTGPTGLHHED--QKL--IYKDKERDSKAFLDVVGVKDKSKLVLVED 126 (355)
Q Consensus 75 sTVgdLK~~I~e~TGVppe~--QKL--IykGK~ldD~~tLs~~GIKdgSkImLv~~ 126 (355)
.++.+|+.+..+..+++... -+| ---|-+.+|++++..+ .++..+|++..
T Consensus 21 ~sL~eL~~K~~~~l~l~~~~~~~~lvL~eDGT~VddEeyF~tL--p~nT~l~~L~~ 74 (80)
T cd06536 21 SSLEELRIKACESLGFDSSSAPITLVLAEDGTIVEDEDYFLCL--PPNTKFVLLAE 74 (80)
T ss_pred CCHHHHHHHHHHHhCCCCCCCceEEEEecCCcEEccHHHHhhC--CCCcEEEEECC
Confidence 48999999999999999432 444 3467779999998876 78888888763
No 122
>PF14451 Ub-Mut7C: Mut7-C ubiquitin
Probab=53.01 E-value=31 Score=27.96 Aligned_cols=52 Identities=17% Similarity=0.187 Sum_probs=40.1
Q ss_pred EEEEEEEcCCCCHHHHHHHHhcccCCCccCcEEec-cCcccCCchhhhhcCCCCCCEEEEee
Q 018493 65 IYHEIHINSQATFGELKKLLTGPTGLHHEDQKLIY-KDKERDSKAFLDVVGVKDKSKLVLVE 125 (355)
Q Consensus 65 ~~~~V~V~~~sTVgdLK~~I~e~TGVppe~QKLIy-kGK~ldD~~tLs~~GIKdgSkImLv~ 125 (355)
..+.+.++..+||+++-+. .|||..+..+|+ +|+..+- +|-+++|+.|.+..
T Consensus 23 ~~~~~~~~~~~tvkd~IEs----LGVP~tEV~~i~vNG~~v~~-----~~~~~~Gd~v~V~P 75 (81)
T PF14451_consen 23 GPFTHPFDGGATVKDVIES----LGVPHTEVGLILVNGRPVDF-----DYRLKDGDRVAVYP 75 (81)
T ss_pred CceEEecCCCCcHHHHHHH----cCCChHHeEEEEECCEECCC-----cccCCCCCEEEEEe
Confidence 3455678888999997554 899999998775 7776553 37889999998864
No 123
>cd06538 CIDE_N_FSP27 CIDE_N domain of FSP27 proteins. The CIDE-N (cell death-inducing DFF45-like effector, N-terminal) domain is found in the FSP27/CIDE-C protein, which has been identified as a n adipocyte lipid droplet protein that negatively regulates lipolysis and promotes triglyceride accumulation. The CIDE protein family includes 3 members: CIDE-A, CIDE-B, and FSP27(CIDE-C). Based on sequence similarity with DFF40 and DFF45, CIDE proteins were initially characterized as mitochondrial activators of apoptosis. The CIDE-N domain of FSP27 is sufficient to increase apoptosis in vitro when overexpressed.
Probab=52.94 E-value=66 Score=26.29 Aligned_cols=50 Identities=12% Similarity=0.168 Sum_probs=38.5
Q ss_pred CCHHHHHHHHhcccCCCcc-CcEEeccCcccCCchhhhhcCCCCCCEEEEeec
Q 018493 75 ATFGELKKLLTGPTGLHHE-DQKLIYKDKERDSKAFLDVVGVKDKSKLVLVED 126 (355)
Q Consensus 75 sTVgdLK~~I~e~TGVppe-~QKLIykGK~ldD~~tLs~~GIKdgSkImLv~~ 126 (355)
.++.+|+.+..+.++++.. ..-|---|-+.+|++++..+ -++..+|+++.
T Consensus 21 ~sL~eL~~K~~~~l~l~~~~~lvL~eDGT~Vd~EeyF~tL--p~nt~l~vL~~ 71 (79)
T cd06538 21 DSLEDLLNKVLDALLLDCISSLVLDEDGTGVDTEEFFQAL--ADNTVFMVLGK 71 (79)
T ss_pred CCHHHHHHHHHHHcCCCCccEEEEecCCcEEccHHHHhhC--CCCcEEEEECC
Confidence 3899999999999999632 23333567789999998876 67888888763
No 124
>PRK11130 moaD molybdopterin synthase small subunit; Provisional
Probab=51.72 E-value=89 Score=24.54 Aligned_cols=52 Identities=8% Similarity=0.035 Sum_probs=30.5
Q ss_pred EEEcC-CCCHHHHHHHHhcccCC-----CccCcEEeccCcccCCchhhhhcCCCCCCEEEEee
Q 018493 69 IHINS-QATFGELKKLLTGPTGL-----HHEDQKLIYKDKERDSKAFLDVVGVKDKSKLVLVE 125 (355)
Q Consensus 69 V~V~~-~sTVgdLK~~I~e~TGV-----ppe~QKLIykGK~ldD~~tLs~~GIKdgSkImLv~ 125 (355)
+.++. .+||.+|++.|.+...- .....++..++....+ +.-|++||.|-++.
T Consensus 19 ~~v~~~~~tv~~l~~~L~~~~~~~~~~~~~~~~~~aVN~~~~~~-----~~~l~dgDeVai~P 76 (81)
T PRK11130 19 LELAADFPTVEALRQHLAQKGDRWALALEDGKLLAAVNQTLVSF-----DHPLTDGDEVAFFP 76 (81)
T ss_pred EEecCCCCCHHHHHHHHHHhCccHHhhhcCCCEEEEECCEEcCC-----CCCCCCCCEEEEeC
Confidence 34443 47999999999887521 1112222233332221 33589999999874
No 125
>PRK05738 rplW 50S ribosomal protein L23; Reviewed
Probab=51.69 E-value=48 Score=27.36 Aligned_cols=57 Identities=21% Similarity=0.173 Sum_probs=44.6
Q ss_pred EEEEEEEcCCCCHHHHHHHHhcccCCCccCcE-EeccCcccCCchhhhhcCCCCCCEEEEe
Q 018493 65 IYHEIHINSQATFGELKKLLTGPTGLHHEDQK-LIYKDKERDSKAFLDVVGVKDKSKLVLV 124 (355)
Q Consensus 65 ~~~~V~V~~~sTVgdLK~~I~e~TGVppe~QK-LIykGK~ldD~~tLs~~GIKdgSkImLv 124 (355)
..|.+.|+..+|=.++|+.|+...||.+.... +++.||.+.... -.|-+.+-+-..+
T Consensus 21 n~~~F~V~~~a~K~eIK~aie~lf~VkV~~VnT~~~~gk~kr~~~---~~g~~~~~KKA~V 78 (92)
T PRK05738 21 NKYVFEVAPDATKPEIKAAVEKLFGVKVESVNTLNVKGKTKRFGR---RIGKRSDWKKAIV 78 (92)
T ss_pred CEEEEEECCCCCHHHHHHHHHHHcCCceeEEEEEEeCCceeeecc---cccccCCcEEEEE
Confidence 57889999999999999999999999998776 568888754332 2566667665554
No 126
>PRK12787 fliX flagellar assembly regulator FliX; Reviewed
Probab=50.17 E-value=26 Score=31.39 Aligned_cols=35 Identities=40% Similarity=0.565 Sum_probs=28.3
Q ss_pred HHHhccCCCCChhhHHHHHHHHHHHHHHHHHHHHhhhh
Q 018493 192 QLLKLDGIMADGDVKLQRKMQVRRVQKYVETLDMLKIK 229 (355)
Q Consensus 192 ~LLKLD~IeaeGdaR~qRK~~VkrVQ~~Le~LD~lk~~ 229 (355)
.||.|-+| +|.=..||-.|+|=..+||.||.||+.
T Consensus 53 ALLALQ~v---dd~~eRRrRav~Rg~~~LD~Ld~Lk~a 87 (138)
T PRK12787 53 ALLALQGV---EDPTERRRRSVRRGETALDVLDELKIG 87 (138)
T ss_pred HHHHHhcc---cchHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 47777776 344455899999999999999999975
No 127
>PTZ00186 heat shock 70 kDa precursor protein; Provisional
Probab=50.00 E-value=88 Score=34.32 Aligned_cols=58 Identities=14% Similarity=0.109 Sum_probs=26.2
Q ss_pred HHHHHHHHHhCCCcchhhHhhHHHHHHHHHHhccCCCCCh-hhHHHHHHHHHHHHHHHHHHHH
Q 018493 164 VSALESIITKGGKVAEKDVLNLIELLMNQLLKLDGIMADG-DVKLQRKMQVRRVQKYVETLDM 225 (355)
Q Consensus 164 v~~LE~~I~~g~Kv~eke~~~LsE~LMq~LLKLD~IeaeG-daR~qRK~~VkrVQ~~Le~LD~ 225 (355)
+..+|+.+.....+...+...+.+.+.+.-.-|++=..+. +.+.. .++++.++..+..
T Consensus 563 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~----~~~l~~~~~~~~~ 621 (657)
T PTZ00186 563 LTTAERQLGEWKYVSDAEKENVKTLVAELRKAMENPNVAKDDLAAA----TDKLQKAVMECGR 621 (657)
T ss_pred HHHHHHHhhhhccCCHHHHHHHHHHHHHHHHHHhcCCcCHHHHHHH----HHHHHHHHHHHHH
Confidence 3444555543234555565666666655433333211111 23333 4555555555554
No 128
>PF14732 UAE_UbL: Ubiquitin/SUMO-activating enzyme ubiquitin-like domain; PDB: 1Y8Q_B 1Y8R_E 3KYD_B 3KYC_B.
Probab=48.62 E-value=53 Score=26.69 Aligned_cols=52 Identities=19% Similarity=0.363 Sum_probs=31.6
Q ss_pred CCCHHHHHHHHh-cccCCCcc----CcEEeccCcc----cCCchhhhhcCCCCCCEEEEee
Q 018493 74 QATFGELKKLLT-GPTGLHHE----DQKLIYKDKE----RDSKAFLDVVGVKDKSKLVLVE 125 (355)
Q Consensus 74 ~sTVgdLK~~I~-e~TGVppe----~QKLIykGK~----ldD~~tLs~~GIKdgSkImLv~ 125 (355)
.+|+++|-+.|- ...|+... .-++||.... .....+|+++||++|+.|.+.-
T Consensus 8 ~~TL~~lv~~Vlk~~Lg~~~P~v~~~~~ilyd~de~~~~~~l~k~L~elgi~~gs~L~v~D 68 (87)
T PF14732_consen 8 KMTLGDLVEKVLKKKLGMNEPDVSVGGTILYDSDEEEYDDNLPKKLSELGIVNGSILTVDD 68 (87)
T ss_dssp T-BHHHHHHHCCCCCS--SSEEEEES-EEEE-SSSSSSTTCTTSBGGGGT--TT-EEEEEE
T ss_pred hCcHHHHHHHHHHhccCCCCCEEEeCCCEEEcCCcchhhhcccCChhHcCCCCCCEEEEEE
Confidence 469999998764 46776642 5567776554 2345689999999999887753
No 129
>PF05008 V-SNARE: Vesicle transport v-SNARE protein N-terminus; InterPro: IPR007705 V-SNARE proteins are required for protein traffic between eukaryotic organelles. The v-SNAREs on transport vesicles interact with t-SNAREs on target membranes in order to facilitate this []. This domain is the N-terminal half of the V-Snare proteins. ; GO: 0006886 intracellular protein transport, 0016020 membrane; PDB: 2V8S_V 1VCS_A 3ONL_C 3ONJ_A 2QYW_A.
Probab=44.20 E-value=65 Score=24.92 Aligned_cols=39 Identities=21% Similarity=0.371 Sum_probs=23.9
Q ss_pred hHHHHHHHHHHhccCCCCChhhHHHHHHHHHHHHHHHHHHHHhh
Q 018493 184 NLIELLMNQLLKLDGIMADGDVKLQRKMQVRRVQKYVETLDMLK 227 (355)
Q Consensus 184 ~LsE~LMq~LLKLD~IeaeGdaR~qRK~~VkrVQ~~Le~LD~lk 227 (355)
.|.+.|.+.|-.+.... | .+|+.+|++|+..|+.++.+-
T Consensus 3 ~l~~~i~~~l~~~~~~~--~---~~r~~~i~~~e~~l~ea~~~l 41 (79)
T PF05008_consen 3 ALTAEIKSKLERIKNLS--G---EQRKSLIREIERDLDEAEELL 41 (79)
T ss_dssp HHHHHHHHHHHHGGGS---C---HHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhhccC--h---HHHHHHHHHHHHHHHHHHHHH
Confidence 44555555554444322 2 478888888888887776655
No 130
>smart00295 B41 Band 4.1 homologues. Also known as ezrin/radixin/moesin (ERM) protein domains. Present in myosins, ezrin, radixin, moesin, protein tyrosine phosphatases. Plasma membrane-binding domain. These proteins play structural and regulatory roles in the assembly and stabilization of specialized plasmamembrane domains. Some PDZ domain containing proteins bind one or more of this family. Now includes JAKs.
Probab=44.08 E-value=1.4e+02 Score=26.34 Aligned_cols=69 Identities=20% Similarity=0.147 Sum_probs=46.5
Q ss_pred eEEEEEe-CCEEEEEEEcCCCCHHHHHHHHhcccCCCcc-CcEEecc----Cc--ccCCchhhhhcCCC-CCCEEEEe
Q 018493 56 IRVRVKY-GSIYHEIHINSQATFGELKKLLTGPTGLHHE-DQKLIYK----DK--ERDSKAFLDVVGVK-DKSKLVLV 124 (355)
Q Consensus 56 I~V~VK~-gg~~~~V~V~~~sTVgdLK~~I~e~TGVppe-~QKLIyk----GK--~ldD~~tLs~~GIK-dgSkImLv 124 (355)
+.|+|.. +|....+.+.+.+|+.++-..|+...||... ..-|.+. |. .++...+|.+...+ ...++++-
T Consensus 4 ~~~~V~l~dg~~~~~~~~~~~t~~ev~~~v~~~~~l~~~~~F~L~~~~~~~~~~~~l~~~~~l~~~~~~~~~~~l~fr 81 (207)
T smart00295 4 RVLKVYLLDGTTLEFEVDSSTTAEELLETVCRKLGIRESEYFGLQFEDPDEDLSHWLDPAKTLLDQDVKSEPLTLYFR 81 (207)
T ss_pred EEEEEEecCCCEEEEEECCCCCHHHHHHHHHHHhCCCccceeEEEEEcCCCCcCeeCCCccCHHHhcCCCCCcEEEEE
Confidence 4455553 4556789999999999999999999999642 2334432 12 26667778877776 34455443
No 131
>cd06409 PB1_MUG70 The MUG70 protein is a product of the meiotically up-regulated gene 70 which has a role in meiosis and harbors a PB1 domain. The PB1 domain is a modular domain mediating specific protein-protein interactions which play a role in many critical cell processes such as osteoclastogenesis, angiogenesis, early cardiovascular development, and cell polarity. A canonical PB1-PB1 interaction, which involves heterodimerization of two PB1 domains, is required for the formation of macromolecular signaling complexes ensuring specificity and fidelity during cellular signaling. The interaction between two PB1 domains depends on the type of PB1. There are three types of PB1 domains: type I which contains an OPCA motif, acidic amino acid cluster, type II which contains a basic cluster, and type I/II which contains both an OPCA motif and a basic cluster. Interactions of PB1 domains with other protein domains have been described as noncanonical PB1-interactions. The PB1 domain module is
Probab=44.07 E-value=44 Score=27.55 Aligned_cols=50 Identities=18% Similarity=0.292 Sum_probs=37.9
Q ss_pred CCEEEEEEEcCCCCHHHHHHHHhcccCCCcc---CcEEeccCcccCCchhhhhcCCCCCCEEEEeec
Q 018493 63 GSIYHEIHINSQATFGELKKLLTGPTGLHHE---DQKLIYKDKERDSKAFLDVVGVKDKSKLVLVED 126 (355)
Q Consensus 63 gg~~~~V~V~~~sTVgdLK~~I~e~TGVppe---~QKLIykGK~ldD~~tLs~~GIKdgSkImLv~~ 126 (355)
.|..|-+.+.++..+.+|+..|+++.|+... ...|.| +|| +|+.|.|.-+
T Consensus 9 ~GrvhRf~~~~s~~~~~L~~~I~~Rl~~d~~~~~~~~L~Y----lDD----------EgD~VllT~D 61 (86)
T cd06409 9 KGRVHRFRLRPSESLEELRTLISQRLGDDDFETHLYALSY----VDD----------EGDIVLITSD 61 (86)
T ss_pred CCCEEEEEecCCCCHHHHHHHHHHHhCCccccCCcccEEE----EcC----------CCCEEEEecc
Confidence 4677888899999999999999999999974 455555 232 4777777543
No 132
>PF14425 Imm3: Immunity protein Imm3
Probab=42.40 E-value=1e+02 Score=26.91 Aligned_cols=78 Identities=21% Similarity=0.241 Sum_probs=53.4
Q ss_pred hhhHHHHHHHHHHhhhhHHHHHHHHHhC----CCc-chhhHhhHHHHHHHHHHhccCCCCChh-hHHHHHHHHHHHHHHH
Q 018493 147 SKSISEISLEVDRLAGQVSALESIITKG----GKV-AEKDVLNLIELLMNQLLKLDGIMADGD-VKLQRKMQVRRVQKYV 220 (355)
Q Consensus 147 ~~aIs~V~~eVDkLa~ev~~LE~~I~~g----~Kv-~eke~~~LsE~LMq~LLKLD~IeaeGd-aR~qRK~~VkrVQ~~L 220 (355)
.++++++..+++.| ..+|++|-.. -.+ ..+=+..+-+.+++.|-++|-.++.++ --.+-+.+..|++++|
T Consensus 28 ~eaiar~~~eye~l----g~~EkiIv~~~igEi~l~~~~i~~~~~~~i~~~L~~~~~~~~~~eLt~eE~~dL~~R~nkVL 103 (117)
T PF14425_consen 28 SEAIARTFDEYENL----GETEKIIVDTAIGEILLSHNKIFVGQKEGITKRLSQFDFEEVKGELTQEEKEDLSQRINKVL 103 (117)
T ss_pred HHHHHHHHHHHHcc----CcHHHHHHHHHHHHHHhhcchHHhhHHHHHHHHHHhcChHHHHhHhhHHHHHHHHHHHHHHH
Confidence 35666666676644 3345543321 011 123477888889999999999988885 4567788999999999
Q ss_pred HHHHHhhh
Q 018493 221 ETLDMLKI 228 (355)
Q Consensus 221 e~LD~lk~ 228 (355)
+.|+....
T Consensus 104 ~~l~~~~i 111 (117)
T PF14425_consen 104 DGLEKVEI 111 (117)
T ss_pred HHHhcCcc
Confidence 99987653
No 133
>PF12436 USP7_ICP0_bdg: ICP0-binding domain of Ubiquitin-specific protease 7; InterPro: IPR024729 This domain is found in eukaryotes, and is approximately 40 amino acids in length. It is found in proteins of the peptidase C19 family, which contains contains ubiquitinyl hydrolases like ubiquitin-specific protease 7 (USP7). USP7 regulates the turnover of p53 [].; PDB: 2KVR_A 2YLM_A.
Probab=42.32 E-value=21 Score=34.16 Aligned_cols=71 Identities=17% Similarity=0.283 Sum_probs=48.0
Q ss_pred CCeeEEEEEe---CCE--EE--EEEEcCCCCHHHHHHHHhcccCCCccCcEEecc----Ccc--cCCchhhhhcCCCCCC
Q 018493 53 PPTIRVRVKY---GSI--YH--EIHINSQATFGELKKLLTGPTGLHHEDQKLIYK----DKE--RDSKAFLDVVGVKDKS 119 (355)
Q Consensus 53 ~~~I~V~VK~---gg~--~~--~V~V~~~sTVgdLK~~I~e~TGVppe~QKLIyk----GK~--ldD~~tLs~~GIKdgS 119 (355)
...|-|.+|+ ..+ .| .+.|+.+++|.+|-..|.+..|+|++..-++|- |++ ++...+|..+.|.+|+
T Consensus 66 ~~~iLlFlK~fDp~~q~L~~iGh~~v~~~~~v~~l~~~i~~~~g~p~~t~l~lyEEi~~~~ie~i~~~~t~~~~el~~Gd 145 (249)
T PF12436_consen 66 SDDILLFLKYFDPETQTLRYIGHVYVPKNDKVSELVPLINERAGLPPDTPLLLYEEIKPNMIEPIDPNQTFEKAELQDGD 145 (249)
T ss_dssp TTEEEEEEEEEETTTTEEEEEEEEEEETT-BGGGTHHHHHHHHT--TT--EEEEEEEETTEEEE--SSSBHHHTT--TTE
T ss_pred CCcEEEEEEeeCCCCCEEEEEeEEEECCCCCHHHHHHHHHHHcCCCCCCceEEEEEeccceeeEcCCCCchhhcccCCCC
Confidence 4468888886 221 22 356899999999999999999999987777763 454 7899999999999999
Q ss_pred EEEE
Q 018493 120 KLVL 123 (355)
Q Consensus 120 kImL 123 (355)
.|..
T Consensus 146 Ii~f 149 (249)
T PF12436_consen 146 IICF 149 (249)
T ss_dssp EEEE
T ss_pred EEEE
Confidence 6554
No 134
>COG1327 Predicted transcriptional regulator, consists of a Zn-ribbon and ATP-cone domains [Transcription]
Probab=41.51 E-value=44 Score=30.53 Aligned_cols=64 Identities=25% Similarity=0.321 Sum_probs=34.8
Q ss_pred hhHHHHHHHHHhCCCcchhhHhhHHHHHHHHHHhccCCCCChhhHHHHHHHHHHHHHHHHHHHHhhh
Q 018493 162 GQVSALESIITKGGKVAEKDVLNLIELLMNQLLKLDGIMADGDVKLQRKMQVRRVQKYVETLDMLKI 228 (355)
Q Consensus 162 ~ev~~LE~~I~~g~Kv~eke~~~LsE~LMq~LLKLD~IeaeGdaR~qRK~~VkrVQ~~Le~LD~lk~ 228 (355)
.-+..+|..+.+.+. +|-.-..+.|++|..|-+||.|.-=-=|-.-|. -+.|-.+.+.|..|+.
T Consensus 86 ~~v~~ie~~Lr~~g~-~EV~S~~IG~~VM~~Lk~lD~VAYvRFASVYr~--F~dv~~F~e~i~~l~~ 149 (156)
T COG1327 86 EAVSHIERQLRSSGE-REVPSKEIGELVMEELKKLDEVAYVRFASVYRS--FKDVDDFEEEIEELTK 149 (156)
T ss_pred HHHHHHHHHHHhcCC-CCCCHHHHHHHHHHHHHhcchhhhhhhhhHhcc--cCCHHHHHHHHHHHHh
Confidence 334444444443322 355667789999999999999932110111110 1334556666666554
No 135
>PF09403 FadA: Adhesion protein FadA; InterPro: IPR018543 FadA (Fusobacterium adhesin A) is an adhesin which forms two alpha helices. ; PDB: 3ETZ_B 3ETY_A 2GL2_B 3ETX_C 3ETW_A.
Probab=41.09 E-value=71 Score=28.12 Aligned_cols=76 Identities=21% Similarity=0.269 Sum_probs=50.0
Q ss_pred HHHHHHHHhhhhHHHHHHHHHh-------CCCcchhhHhhHHHHHHHHHHhccCCCCChhh---HHHHHHHHHHHHHHHH
Q 018493 152 EISLEVDRLAGQVSALESIITK-------GGKVAEKDVLNLIELLMNQLLKLDGIMADGDV---KLQRKMQVRRVQKYVE 221 (355)
Q Consensus 152 ~V~~eVDkLa~ev~~LE~~I~~-------g~Kv~eke~~~LsE~LMq~LLKLD~IeaeGda---R~qRK~~VkrVQ~~Le 221 (355)
.|..+++.|+.++..|++.... -....+.++..+.|+--....++.-|..+.++ |.+=|.++++-++++.
T Consensus 24 ~v~~~l~~LEae~q~L~~kE~~r~~~~k~~ae~a~~~L~~~~~~~~~i~e~~~kl~~~~~~r~yk~eYk~llk~y~~~~~ 103 (126)
T PF09403_consen 24 SVESELNQLEAEYQQLEQKEEARYNEEKQEAEAAEAELAELKELYAEIEEKIEKLKQDSKVRWYKDEYKELLKKYKDLLN 103 (126)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHGGGSTTHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHhcchhHHHHHHHHHHHHHHHHHH
Confidence 4555566666666555442211 12233677777888777777777777666665 5666789999999999
Q ss_pred HHHHhh
Q 018493 222 TLDMLK 227 (355)
Q Consensus 222 ~LD~lk 227 (355)
.||.=-
T Consensus 104 ~L~k~I 109 (126)
T PF09403_consen 104 KLDKEI 109 (126)
T ss_dssp HHHHHH
T ss_pred HHHHHH
Confidence 999743
No 136
>KOG3650 consensus Predicted coiled-coil protein [General function prediction only]
Probab=40.68 E-value=39 Score=28.99 Aligned_cols=34 Identities=29% Similarity=0.422 Sum_probs=22.7
Q ss_pred ccCCCCChhhHHHHHHHHHHHHHHHHHHHHhhhh
Q 018493 196 LDGIMADGDVKLQRKMQVRRVQKYVETLDMLKIK 229 (355)
Q Consensus 196 LD~IeaeGdaR~qRK~~VkrVQ~~Le~LD~lk~~ 229 (355)
||+++++.++|..+--++..|-.+-.+||.|.+|
T Consensus 45 l~a~e~~~d~~EEKaRlItQVLELQnTLdDLSqR 78 (120)
T KOG3650|consen 45 LDAVEAENDVEEEKARLITQVLELQNTLDDLSQR 78 (120)
T ss_pred ccccccccChHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 8899888877666666666665555566655544
No 137
>PF00276 Ribosomal_L23: Ribosomal protein L23; InterPro: IPR013025 Ribosomes are the particles that catalyse mRNA-directed protein synthesis in all organisms. The codons of the mRNA are exposed on the ribosome to allow tRNA binding. This leads to the incorporation of amino acids into the growing polypeptide chain in accordance with the genetic information. Incoming amino acid monomers enter the ribosomal A site in the form of aminoacyl-tRNAs complexed with elongation factor Tu (EF-Tu) and GTP. The growing polypeptide chain, situated in the P site as peptidyl-tRNA, is then transferred to aminoacyl-tRNA and the new peptidyl-tRNA, extended by one residue, is translocated to the P site with the aid the elongation factor G (EF-G) and GTP as the deacylated tRNA is released from the ribosome through one or more exit sites [, ]. About 2/3 of the mass of the ribosome consists of RNA and 1/3 of protein. The proteins are named in accordance with the subunit of the ribosome which they belong to - the small (S1 to S31) and the large (L1 to L44). Usually they decorate the rRNA cores of the subunits. Many ribosomal proteins, particularly those of the large subunit, are composed of a globular, surfaced-exposed domain with long finger-like projections that extend into the rRNA core to stabilise its structure. Most of the proteins interact with multiple RNA elements, often from different domains. In the large subunit, about 1/3 of the 23S rRNA nucleotides are at least in van der Waal's contact with protein, and L22 interacts with all six domains of the 23S rRNA. Proteins S4 and S7, which initiate assembly of the 16S rRNA, are located at junctions of five and four RNA helices, respectively. In this way proteins serve to organise and stabilise the rRNA tertiary structure. While the crucial activities of decoding and peptide transfer are RNA based, proteins play an active role in functions that may have evolved to streamline the process of protein synthesis. In addition to their function in the ribosome, many ribosomal proteins have some function 'outside' the ribosome [, ]. This domain is found in both eukaryotic L25 and prokaryotic and eukaryotic L23 proteins.; GO: 0003735 structural constituent of ribosome, 0006412 translation, 0005622 intracellular, 0005840 ribosome; PDB: 3DF4_T 3DF2_T 4A1E_R 4A1A_R 4A1C_R 4A17_R 2HGU_W 2HGQ_W 1N88_A 2HGJ_W ....
Probab=38.81 E-value=35 Score=27.90 Aligned_cols=41 Identities=17% Similarity=0.255 Sum_probs=35.6
Q ss_pred EEEEEEEcCCCCHHHHHHHHhcccCCCccCcE-EeccCcccC
Q 018493 65 IYHEIHINSQATFGELKKLLTGPTGLHHEDQK-LIYKDKERD 105 (355)
Q Consensus 65 ~~~~V~V~~~sTVgdLK~~I~e~TGVppe~QK-LIykGK~ld 105 (355)
..|.+.|+..+|=-++|+.|+...||.+...+ +++.||...
T Consensus 21 n~~tF~V~~~atK~~Ik~aie~iy~V~V~~Vnt~~~~gk~kR 62 (91)
T PF00276_consen 21 NQYTFEVDPRATKTEIKEAIEKIYGVKVKKVNTMNYPGKKKR 62 (91)
T ss_dssp SEEEEEETTTSTHHHHHHHHHHHHTSEEEEEEEEEETSEEEE
T ss_pred CEEEEEEeCCCCHHHHHHHHHhhcCCCeeEEEEeEeCCCceE
Confidence 46889999999999999999999999998776 568888754
No 138
>PF03671 Ufm1: Ubiquitin fold modifier 1 protein; InterPro: IPR005375 Ubiquitinylation is an ATP-dependent process that involves the action of at least three enzymes: a ubiquitin-activating enzyme (E1, IPR000011 from INTERPRO), a ubiquitin-conjugating enzyme (E2, IPR000608 from INTERPRO), and a ubiquitin ligase (E3, IPR000569 from INTERPRO, IPR003613 from INTERPRO), which work sequentially in a cascade. There are many different E3 ligases, which are responsible for the type of ubiquitin chain formed, the specificity of the target protein, and the regulation of the ubiquitinylation process []. Ubiquitinylation is an important regulatory tool that controls the concentration of key signalling proteins, such as those involved in cell cycle control, as well as removing misfolded, damaged or mutant proteins that could be harmful to the cell. Several ubiquitin-like molecules have been discovered, such as Ufm1 (IPR005375 from INTERPRO), SUMO1 (IPR003653 from INTERPRO), NEDD8, Rad23 (IPR004806 from INTERPRO), Elongin B and Parkin (IPR003977 from INTERPRO), the latter being involved in Parkinson's disease []. Ubiquitin-like molecules (UBLs) can be divided into two subclasses: type-1 UBLs, which ligate to target proteins in a manner similar, but not identical, to the ubiquitylation pathway, such as SUMO, NEDD8, and UCRP/ISG15, and type-2 UBLs (also called UDPs, ubiquitin-domain proteins), which contain ubiquitin-like structure embedded in a variety of different classes of large proteins with apparently distinct functions, such as Rad23, Elongin B, Scythe, Parkin, and HOIL-1. This entry represents Ufm1 (ubiquitin-fold modifier), which is a ubiquitin-like protein with structural similarities to ubiquitin [, ]. Ufm1 is one of a number of ubiquitin-like modifiers that conjugate to target proteins in cells through Uba5 (E1) and Ufc1 (E2). The Ufm1-system is conserved in metazoa and plants, suggesting it has a potential role in multicellular organisms []. Human Ufm1 is synthesized as a precursor consisting of 85 amino-acid residues. Prior to activation by Uba5, the extra amino acids at the C-terminal region of Ufm1 are removed to expose Gly, which is necessary for conjugation to target molecule(s). C-terminal processing of Ufm1 requires two specific cysteine peptidases (IPR012462 from INTERPRO): UfSP1 and UfSP2; both peptidases are also able to release Ufm1 from Ufm1-conjugated cellular proteins. UfSP2 is present in most, if not all, of multi-cellular organisms including plant, nematode, fly, and mammal, whereas UfSP1 is not present in plants and nematodes []. For further information on ubiquitin, please see Protein of the Month [].; PDB: 1J0G_A 1WXS_A 1L7Y_A.
Probab=38.16 E-value=58 Score=26.42 Aligned_cols=59 Identities=20% Similarity=0.229 Sum_probs=47.4
Q ss_pred EEEEEEcCCCCHHHHHHHHhcccCCCccCcEEeccCcc-cCCchhhhhcCCCCCCEEEEe
Q 018493 66 YHEIHINSQATFGELKKLLTGPTGLHHEDQKLIYKDKE-RDSKAFLDVVGVKDKSKLVLV 124 (355)
Q Consensus 66 ~~~V~V~~~sTVgdLK~~I~e~TGVppe~QKLIykGK~-ldD~~tLs~~GIKdgSkImLv 124 (355)
.+.+.||..+.+..+-+..++...||+..=-+|-.... .....+-...-+|.|+.|-|+
T Consensus 17 ~kv~sVPE~apftaVlkfaAeeF~vp~~tsaiItndG~GInP~QTag~vflKhGseLrli 76 (76)
T PF03671_consen 17 YKVISVPEEAPFTAVLKFAAEEFKVPPATSAIITNDGVGINPQQTAGNVFLKHGSELRLI 76 (76)
T ss_dssp EEEEEEETTSBHHHHHHHHHHHTTS-SSSEEEEESSS-EE-TTSBHHHHHHHT-SEEEEE
T ss_pred ceEEecCCCCchHHHHHHHHHHcCCCCceEEEEecCCcccccchhhhhhHhhcCcEeeeC
Confidence 34578999999999999999999999988888876666 888889888889999998875
No 139
>PF11620 GABP-alpha: GA-binding protein alpha chain; InterPro: IPR024668 GA-binding protein alpha is a transcription factor capable of interacting with purine rich repeats (GA repeats). This N-terminal domain found in the transcription factor GABP alpha consists of a five-stranded beta-sheet crossed by a distorted helix and has been termed OST domain. The surface of the GABP alpha OST domain contains two clusters of negatively-charged residues suggesting there are positively-charged partner proteins. The OST domain binds to the CH1 and CH3 domains of the co-activator histone acetyltransferase CBP/p300 [].; PDB: 2JUO_A.
Probab=38.04 E-value=50 Score=27.54 Aligned_cols=58 Identities=21% Similarity=0.227 Sum_probs=40.8
Q ss_pred EEEEEcCCCCHHHHHHHHhcccCCCccCcEEeccCcccCCchhhhhcCCCCCCEEEEe
Q 018493 67 HEIHINSQATFGELKKLLTGPTGLHHEDQKLIYKDKERDSKAFLDVVGVKDKSKLVLV 124 (355)
Q Consensus 67 ~~V~V~~~sTVgdLK~~I~e~TGVppe~QKLIykGK~ldD~~tLs~~GIKdgSkImLv 124 (355)
...+++-...++.||..|+.+.|+.-+.-.+...+..++++.+|-+-||+-.-.|-+.
T Consensus 5 I~q~mDI~epl~~Lk~lLe~Rl~~~L~~~~f~LQD~~L~~~k~L~dQcVqgeGlVQln 62 (88)
T PF11620_consen 5 IMQHMDIREPLSTLKKLLERRLGISLSDYEFWLQDIQLEPHKSLVDQCVQGEGLVQLN 62 (88)
T ss_dssp EEEEEESSSBGGGHHHHSHHHH-S--SS-EEEETTEE--TTSBTTTSS----SEEEEE
T ss_pred EEEEEecCCcHHHHHHHHHHhhCCCcCCCeEEeccceecCCccHHHhhccccCEEEEE
Confidence 3456777889999999999999999999998888888999999999999866666554
No 140
>PF00788 RA: Ras association (RalGDS/AF-6) domain; InterPro: IPR000159 Proteins with this domain are mostly RasGTP effectors and include guanine-nucleotide releasing factor in mammals []. This factor stimulates the dissociation of GDP from the Ras-related RALA and RALB GTPases, which allows GTP binding and activation of the GTPases. It interacts and acts as an effector molecule for R-ras, K-Ras and Rap []. The domain is also present in a number of other proteins among them the sexual differentiation protein in yeast that is essential for mating and meiosis and yeast adenylate cyclase. These proteins contain repeated leucine-rich (LRR) segments.; GO: 0007165 signal transduction; PDB: 3EC8_A 2C5L_D 2BYF_A 2CS4_A 3KH0_A 2B3A_A 1RAX_A 2RGF_A 1WGR_A 1WXA_A ....
Probab=38.03 E-value=72 Score=24.66 Aligned_cols=47 Identities=26% Similarity=0.345 Sum_probs=33.9
Q ss_pred EEEEEEcCCCCHHHHHHHHhcccCC--CccCcEEe----ccCcc--cC-Cchhhhh
Q 018493 66 YHEIHINSQATFGELKKLLTGPTGL--HHEDQKLI----YKDKE--RD-SKAFLDV 112 (355)
Q Consensus 66 ~~~V~V~~~sTVgdLK~~I~e~TGV--ppe~QKLI----ykGK~--ld-D~~tLs~ 112 (355)
...|.|+..+|+.++-..+.+++|+ .+..-.|+ ..|.+ |+ ++.+|..
T Consensus 18 ~k~i~v~~~tTa~evi~~~l~k~~l~~~~~~y~L~~~~~~~~~er~L~~~E~pl~i 73 (93)
T PF00788_consen 18 YKTIKVSSSTTAREVIEMALEKFGLAEDPSDYCLVEVEESGGEERPLDDDECPLQI 73 (93)
T ss_dssp EEEEEEETTSBHHHHHHHHHHHTTTSSSGGGEEEEEEECTTTEEEEETTTSBHHHH
T ss_pred EEEEEECCCCCHHHHHHHHHHHhCCCCCCCCEEEEEEEcCCCEEEEcCCCCchHHH
Confidence 6678999999999999999999999 34556663 34444 54 4444443
No 141
>cd06401 PB1_TFG The PB1 domain found in TFG protein, an oncogenic gene product and fusion partner to nerve growth factor tyrosine kinase receptor TrkA and to the tyrosine kinase ALK. The PB1 domain is a modular domain mediating specific protein-protein interaction in many critical cell processes, such as osteoclastogenesis, angiogenesis, early cardiovascular development and cell polarity. A canonical PB1-PB1 interaction, which involves heterodimerization of two PB1 domains, is required for the formation of macromolecular signaling complexes ensuring specificity and fidelity during cellular signaling. The interaction between two PB1 domain depends on the type of PB1. There are three types of PB1 domains: type I which contains an OPCA motif, acidic aminoacid cluster, type II which contains a basic cluster, and type I/II which contains both an OPCA motif and a basic cluster. The PB1 domains of TFG represent a type I/II PB1 domain. The physiological function of TFG remains unknown.
Probab=37.68 E-value=96 Score=25.48 Aligned_cols=33 Identities=18% Similarity=0.283 Sum_probs=27.8
Q ss_pred EEEEEeCCEEEEEEEcCC-CCHHHHHHHHhcccC
Q 018493 57 RVRVKYGSIYHEIHINSQ-ATFGELKKLLTGPTG 89 (355)
Q Consensus 57 ~V~VK~gg~~~~V~V~~~-sTVgdLK~~I~e~TG 89 (355)
.|++.+|+....+.++.. .|+.+|...++....
T Consensus 2 iiK~~~g~DiR~~~~~~~~~t~~~L~~~v~~~F~ 35 (81)
T cd06401 2 ILKAQLGDDIRRIPIHNEDITYDELLLMMQRVFR 35 (81)
T ss_pred eEEEEeCCeEEEEeccCccccHHHHHHHHHHHhc
Confidence 577889998888888874 699999999987766
No 142
>PRK08053 sulfur carrier protein ThiS; Provisional
Probab=37.23 E-value=1.8e+02 Score=21.99 Aligned_cols=59 Identities=14% Similarity=0.135 Sum_probs=38.6
Q ss_pred EEeCCEEEEEEEcCCCCHHHHHHHHhcccCCCccCcEEeccCcccCCchhhhhcCCCCCCEEEEee
Q 018493 60 VKYGSIYHEIHINSQATFGELKKLLTGPTGLHHEDQKLIYKDKERDSKAFLDVVGVKDKSKLVLVE 125 (355)
Q Consensus 60 VK~gg~~~~V~V~~~sTVgdLK~~I~e~TGVppe~QKLIykGK~ldD~~tLs~~GIKdgSkImLv~ 125 (355)
|.-.|+. +.++...|+.+|-+.+ ++......+-++|.... ....+..-|++||+|-++.
T Consensus 3 i~vNg~~--~~~~~~~tl~~ll~~l----~~~~~~vaVavN~~iv~-r~~w~~~~L~~gD~Ieii~ 61 (66)
T PRK08053 3 ILFNDQP--MQCAAGQTVHELLEQL----NQLQPGAALAINQQIIP-REQWAQHIVQDGDQILLFQ 61 (66)
T ss_pred EEECCeE--EEcCCCCCHHHHHHHc----CCCCCcEEEEECCEEeC-hHHcCccccCCCCEEEEEE
Confidence 3444554 3556778999888764 55555566667887743 2234455699999998874
No 143
>PTZ00380 microtubule-associated protein (MAP); Provisional
Probab=36.75 E-value=92 Score=27.33 Aligned_cols=42 Identities=14% Similarity=0.115 Sum_probs=32.1
Q ss_pred EEcCCCCHHHHHHHHhcccCCCccCcEEeccCc-ccCCchhhhh
Q 018493 70 HINSQATFGELKKLLTGPTGLHHEDQKLIYKDK-ERDSKAFLDV 112 (355)
Q Consensus 70 ~V~~~sTVgdLK~~I~e~TGVppe~QKLIykGK-~ldD~~tLs~ 112 (355)
-||.+.||++|...|....+++++. -.+|-+. ....+.++.+
T Consensus 46 lVP~d~tV~qF~~iIRkrl~l~~~k-~flfVnn~lp~~s~~mg~ 88 (121)
T PTZ00380 46 ALPRDATVAELEAAVRQALGTSAKK-VTLAIEGSTPAVTATVGD 88 (121)
T ss_pred EcCCCCcHHHHHHHHHHHcCCChhH-EEEEECCccCCccchHHH
Confidence 5999999999999999999999998 4444444 4455555554
No 144
>COG2104 ThiS Sulfur transfer protein involved in thiamine biosynthesis [Coenzyme metabolism]
Probab=35.93 E-value=1.6e+02 Score=23.08 Aligned_cols=61 Identities=13% Similarity=0.153 Sum_probs=43.4
Q ss_pred EEEEeCCEEEEEEEcCCCCHHHHHHHHhcccCCCccCcEEeccCcccCCchhhhhcCCCCCCEEEEee
Q 018493 58 VRVKYGSIYHEIHINSQATFGELKKLLTGPTGLHHEDQKLIYKDKERDSKAFLDVVGVKDKSKLVLVE 125 (355)
Q Consensus 58 V~VK~gg~~~~V~V~~~sTVgdLK~~I~e~TGVppe~QKLIykGK~ldD~~tLs~~GIKdgSkImLv~ 125 (355)
+++..+++. +.++...|+.||=+. .|++++.--+.++|.....+ ...+.-+++||+|-++.
T Consensus 3 m~i~~ng~~--~e~~~~~tv~dLL~~----l~~~~~~vav~vNg~iVpr~-~~~~~~l~~gD~ievv~ 63 (68)
T COG2104 3 MTIQLNGKE--VEIAEGTTVADLLAQ----LGLNPEGVAVAVNGEIVPRS-QWADTILKEGDRIEVVR 63 (68)
T ss_pred EEEEECCEE--EEcCCCCcHHHHHHH----hCCCCceEEEEECCEEccch-hhhhccccCCCEEEEEE
Confidence 445555654 556666899998766 68888888888999875432 34566789999998763
No 145
>cd01775 CYR1_RA Ubiquitin domain of CYR1 adenylate cyclase. CYR1 is a fungal adenylate cyclase with at least four domains, an N-terminal RA (Ras association) domain, a middle leucine-rich repeat domain, a catalytic domain. The N-terminal RA domain of CYR1 post-translationally modifies a small GTPase called Ras. The Ras-CYR1 pathway has been implicated in the transduction of a glucose-triggered signal to an intracellular environment where a protein phosphorylation cascade is initiated by cyclic AMP.
Probab=35.76 E-value=91 Score=26.46 Aligned_cols=68 Identities=16% Similarity=0.167 Sum_probs=47.6
Q ss_pred EEEEe-CCEEEEEEEcCCCCHHHHHHHHhcccCCCcc-CcE-EeccCcc---cCCch--------hhhhcCCCCCCEEEE
Q 018493 58 VRVKY-GSIYHEIHINSQATFGELKKLLTGPTGLHHE-DQK-LIYKDKE---RDSKA--------FLDVVGVKDKSKLVL 123 (355)
Q Consensus 58 V~VK~-gg~~~~V~V~~~sTVgdLK~~I~e~TGVppe-~QK-LIykGK~---ldD~~--------tLs~~GIKdgSkImL 123 (355)
|+|=. .+....+..+.++||.||-..|..++.++.. .-+ ++++|.. |+..+ -|...|-++.|.|..
T Consensus 5 IRIFr~D~Tf~Tls~~l~tTv~eli~~L~rK~~l~~~~ny~l~l~~~~l~RvL~p~ErPl~IqkrlL~q~GY~~~D~l~~ 84 (97)
T cd01775 5 IRVFRSDGTFTTLSCPLNTTVSELIPQLAKKFYLPSGGNYQLSLKKHDLSRVLRPTEKPLLIQKRLLLQVGYEERDRIED 84 (97)
T ss_pred EEEEecCCcEEEEEcCCcCcHHHHHHHHHHhhcCCCCCCeEEEEEECCeeeecCCcCCcHHHHHHHHHHcCCCCCCcHHH
Confidence 44443 4566788999999999999999999999873 333 4555532 54332 366677777777776
Q ss_pred ee
Q 018493 124 VE 125 (355)
Q Consensus 124 v~ 125 (355)
+|
T Consensus 85 lG 86 (97)
T cd01775 85 IG 86 (97)
T ss_pred hC
Confidence 65
No 146
>KOG2086 consensus Protein tyrosine phosphatase SHP1/Cofactor for p97 ATPase-mediated vesicle membrane fusion [Nuclear structure]
Probab=35.47 E-value=71 Score=33.11 Aligned_cols=67 Identities=15% Similarity=0.275 Sum_probs=47.3
Q ss_pred CeeEEEEEeCCEEEEEEEcCCCCHHHHHHHHhcccCC-CccCcEEe--ccCcc-cCCchhhhhcCCCCCCEE
Q 018493 54 PTIRVRVKYGSIYHEIHINSQATFGELKKLLTGPTGL-HHEDQKLI--YKDKE-RDSKAFLDVVGVKDKSKL 121 (355)
Q Consensus 54 ~~I~V~VK~gg~~~~V~V~~~sTVgdLK~~I~e~TGV-ppe~QKLI--ykGK~-ldD~~tLs~~GIKdgSkI 121 (355)
.+|.|+...|+ .....++-+-||.|++.-|...-.- +..-+-|+ |=-|. .|++.||++.||++...|
T Consensus 306 TsIQIRLanG~-RlV~~fN~sHTv~DIR~fI~~aRp~~~~~~F~L~~~FPpk~l~D~sqTle~AgL~Nsvlv 376 (380)
T KOG2086|consen 306 TSIQIRLANGT-RLVLKFNHSHTVSDIREFIDTARPGDSSTYFILMMAFPPKPLSDDSQTLEEAGLLNSVLV 376 (380)
T ss_pred ceEEEEecCCc-eeeeeccCcccHHHHHHHHHhcCCCCcCCceeeeecCCCcccCCcchhHHhccchhhhhh
Confidence 34666666664 4556788889999999999976433 33445555 44566 478899999999986543
No 147
>cd01766 Ufm1 Urm1-like ubiquitin domain. Ufm1 (ubiquitin-fold modifier 1) is a post-translational UBL (ubiquitin-like) modifier with a tertiary structure similar to that of ubiquitin. Ufm1 is initially expressed as a precursor which undergoes C-terminal cleavage to expose a conserved glycine residue that is required for the conjugation reactions involving Ufm1.
Probab=33.31 E-value=1.1e+02 Score=24.95 Aligned_cols=58 Identities=16% Similarity=0.143 Sum_probs=51.2
Q ss_pred EEEEcCCCCHHHHHHHHhcccCCCccCcEEeccCcc-cCCchhhhhcCCCCCCEEEEee
Q 018493 68 EIHINSQATFGELKKLLTGPTGLHHEDQKLIYKDKE-RDSKAFLDVVGVKDKSKLVLVE 125 (355)
Q Consensus 68 ~V~V~~~sTVgdLK~~I~e~TGVppe~QKLIykGK~-ldD~~tLs~~GIKdgSkImLv~ 125 (355)
.++|+..+.+..+-+-.++.++||+..--+|-+... .....+-..+=+|.|+.|-|+.
T Consensus 19 vlsVpE~aPftAvlkfaAEeFkv~~~TsAiiTndGvGINP~qtAGnvflkhgselrliP 77 (82)
T cd01766 19 VLSVPESTPFTAVLKFAAEEFKVPAATSAIITNDGIGINPAQTAGNVFLKHGSELRLIP 77 (82)
T ss_pred EEeccccCchHHHHHHHHHhcCCCccceeEEecCccccChhhcccceeeecCCEeeecc
Confidence 468999999999999999999999988788877666 8899999999999999999984
No 148
>PRK12280 rplW 50S ribosomal protein L23; Reviewed
Probab=32.29 E-value=1.2e+02 Score=27.71 Aligned_cols=41 Identities=12% Similarity=0.016 Sum_probs=35.0
Q ss_pred EEEEEEEcCCCCHHHHHHHHhcccCCCccCcEE-eccCcccC
Q 018493 65 IYHEIHINSQATFGELKKLLTGPTGLHHEDQKL-IYKDKERD 105 (355)
Q Consensus 65 ~~~~V~V~~~sTVgdLK~~I~e~TGVppe~QKL-IykGK~ld 105 (355)
..|.+.|+..+|=-++|+.|+..+||.+..... +..|+.+.
T Consensus 23 N~ytF~V~~~anK~eIK~AVE~iF~VkV~~VNT~~~~~K~KR 64 (158)
T PRK12280 23 NVYTFKVDRRANKIEIKKAVEFIFKVKVLKVNIFNVDKKPKR 64 (158)
T ss_pred CEEEEEECCCCCHHHHHHHHHHHhCCceEEEEeEecCCcccc
Confidence 469999999999999999999999999987764 47776643
No 149
>PRK07440 hypothetical protein; Provisional
Probab=32.21 E-value=2.4e+02 Score=21.83 Aligned_cols=61 Identities=13% Similarity=0.201 Sum_probs=42.6
Q ss_pred EEEEeCCEEEEEEEcCCCCHHHHHHHHhcccCCCccCcEEeccCcccCCchhhhhcCCCCCCEEEEee
Q 018493 58 VRVKYGSIYHEIHINSQATFGELKKLLTGPTGLHHEDQKLIYKDKERDSKAFLDVVGVKDKSKLVLVE 125 (355)
Q Consensus 58 V~VK~gg~~~~V~V~~~sTVgdLK~~I~e~TGVppe~QKLIykGK~ldD~~tLs~~GIKdgSkImLv~ 125 (355)
++|.-.|+. +.++...|+.+|-+. .+++++..-+-++|.... .....+.-|++||+|-++.
T Consensus 5 m~i~vNG~~--~~~~~~~tl~~lL~~----l~~~~~~vav~~N~~iv~-r~~w~~~~L~~gD~IEIv~ 65 (70)
T PRK07440 5 ITLQVNGET--RTCSSGTSLPDLLQQ----LGFNPRLVAVEYNGEILH-RQFWEQTQVQPGDRLEIVT 65 (70)
T ss_pred eEEEECCEE--EEcCCCCCHHHHHHH----cCCCCCeEEEEECCEEeC-HHHcCceecCCCCEEEEEE
Confidence 455556654 456778899887654 577777777778888753 2334566799999998873
No 150
>cd06405 PB1_Mekk2_3 The PB1 domain is present in the two mitogen-activated protein kinase kinases MEKK2 and MEKK3 which are two members of the signaling kinase cascade involved in angiogenesis and early cardiovascular development. The PB1 domain of MEKK2 (and/or MEKK3) interacts with the PB1 domain of another member of the kinase cascade Map2k5. A canonical PB1-PB1 interaction, which involves heterodimerization of two PB1 domains, is required for the formation of macromolecular signaling complexes ensuring specificity and fidelity during cellular signaling. The interaction between two PB1 domain depends on the type of PB1. There are three types of PB1 domains: type I which contains an OPCA motif, acidic aminoacid cluster, type II which contains a basic cluster, and type I/II which contains both an OPCA motif and a basic cluster. Interactions of PB1 domains with other protein domains have been described as noncanonical PB1-interactions. The PB1 domain module is conserved in amoebas, f
Probab=31.14 E-value=82 Score=25.74 Aligned_cols=45 Identities=20% Similarity=0.341 Sum_probs=37.2
Q ss_pred eEEEEEeCCEEEEEEEcCCCCHHHHHHHHhcccCCCccCcEEeccCcc
Q 018493 56 IRVRVKYGSIYHEIHINSQATFGELKKLLTGPTGLHHEDQKLIYKDKE 103 (355)
Q Consensus 56 I~V~VK~gg~~~~V~V~~~sTVgdLK~~I~e~TGVppe~QKLIykGK~ 103 (355)
|+|+..|.|++..|.++..-.+.||.+++...+|-+- -|.|-.++
T Consensus 1 vRiKfE~~gEKRIi~f~RPvkf~dl~~kv~~afGq~m---dl~ytn~e 45 (79)
T cd06405 1 VRIKFEHNGEKRIIQFPRPVKFKDLQQKVTTAFGQPM---DLHYTNNE 45 (79)
T ss_pred CeEEEEecCceEEEecCCCccHHHHHHHHHHHhCCee---eEEEeccc
Confidence 5678889999999999999999999999999999653 35565543
No 151
>cd01776 Rin1_RA Ubiquitin domain of RIN1 RAS effector. Rin1_RA RIN1 is a RAS effector that binds with specificity and high affinity to activated RAS via its carboxy-terminal RA (RAS-associated) domain. RIN1 competes directly with RAF1 for RAS binding and is thought to divert signaling away from RAF and the MAPK pathway while also shunting RAS signals through alternate pathways. In addition, Rin1 and Rin2 are Rab5-binding proteins, binding preferentially to the GTP-bound form, that enhance the GDP-GTP exchange reaction on Rab5 that regulate the docking and fusion processes of endocytic vesicles. In addition to the RA domain, RIN1 and RIN2 have an SH2 (Src homology 2) domain, a proline-rich SH3 domain, and a Vps9 domain.
Probab=30.90 E-value=1.1e+02 Score=25.46 Aligned_cols=44 Identities=9% Similarity=0.080 Sum_probs=33.2
Q ss_pred EEEEEEEcCCCCHHHHHHHHhcccCCC-ccCcEEe-cc-Ccc--cCCch
Q 018493 65 IYHEIHINSQATFGELKKLLTGPTGLH-HEDQKLI-YK-DKE--RDSKA 108 (355)
Q Consensus 65 ~~~~V~V~~~sTVgdLK~~I~e~TGVp-pe~QKLI-yk-GK~--ldD~~ 108 (355)
....+-|.+++|..+|-++++++..|. |+.-.|+ |+ |.. |.|++
T Consensus 14 t~KTL~V~P~~tt~~vc~lcA~Kf~V~qPe~y~LFl~vdg~~~qLadd~ 62 (87)
T cd01776 14 TGKTLLVRPYITTEDVCQLCAEKFKVTQPEEYSLFLFVEETWQQLAPDT 62 (87)
T ss_pred eeeeeecCCCCcHHHHHHHHHHHhccCChhheeEEEEECCcEEEcCccc
Confidence 345678999999999999999999998 6666664 33 433 65554
No 152
>KOG4842 consensus Protein involved in sister chromatid separation and/or segregation [Cell cycle control, cell division, chromosome partitioning]
Probab=30.87 E-value=25 Score=34.71 Aligned_cols=50 Identities=8% Similarity=0.024 Sum_probs=42.0
Q ss_pred eEEEEEeCCEEEEEEEcCCCCHHHHHHHHhcccCCCccCcEEeccCcccC
Q 018493 56 IRVRVKYGSIYHEIHINSQATFGELKKLLTGPTGLHHEDQKLIYKDKERD 105 (355)
Q Consensus 56 I~V~VK~gg~~~~V~V~~~sTVgdLK~~I~e~TGVppe~QKLIykGK~ld 105 (355)
|.+...+.+..+-++++...+|-|.+..|...++|.+.-.||++.+-..+
T Consensus 4 i~~~~~~~gn~i~ls~~~~~ri~D~~~~l~K~~~vss~~~kll~~~llk~ 53 (278)
T KOG4842|consen 4 IKTEGIKSGNAIYLSMAGSQRIPDKNPHLQKVAVVSSKPNKLLALNLLKE 53 (278)
T ss_pred EEEEEEecCcEEEEEeccccccCCCCcccceeeeeccchHHHHhhhhhhh
Confidence 44455567788899999999999999999999999999999998875433
No 153
>PF14817 HAUS5: HAUS augmin-like complex subunit 5
Probab=30.70 E-value=3.7e+02 Score=29.78 Aligned_cols=80 Identities=20% Similarity=0.276 Sum_probs=44.3
Q ss_pred hhhhHHHHHHHHHHhhhhHHHHHHHHHhCCCcchhhHhhHHHHHHHH-HHhccCCCCChhhHHHHH---HHHHHHHHHHH
Q 018493 146 ASKSISEISLEVDRLAGQVSALESIITKGGKVAEKDVLNLIELLMNQ-LLKLDGIMADGDVKLQRK---MQVRRVQKYVE 221 (355)
Q Consensus 146 a~~aIs~V~~eVDkLa~ev~~LE~~I~~g~Kv~eke~~~LsE~LMq~-LLKLD~IeaeGdaR~qRK---~~VkrVQ~~Le 221 (355)
....|...+.++..+..++...|.-+....--.+.-...+.+.-=++ ||+ +- ++-++..++ +-.+|||.+|+
T Consensus 84 L~~everLraei~~l~~~I~~~e~e~~~~e~~~~q~~~~~~~~~~k~~LL~--Ay--~q~c~~~~~~l~e~~~rl~~~~~ 159 (632)
T PF14817_consen 84 LEKEVERLRAEIQELDKEIESREREVSRQEASREQMLDKISDSRHKQLLLE--AY--SQQCEEQRRILREYTKRLQGQVE 159 (632)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH--HH--HHHHHHHHHHHHHHHHHHHHHHH
Confidence 44567777888877777777776654432111122223333333333 222 11 123444444 45789999999
Q ss_pred HHHHhhhh
Q 018493 222 TLDMLKIK 229 (355)
Q Consensus 222 ~LD~lk~~ 229 (355)
.+..+..+
T Consensus 160 ~~q~~~R~ 167 (632)
T PF14817_consen 160 QLQDIQRK 167 (632)
T ss_pred HHHHHHhh
Confidence 99888643
No 154
>PRK08453 fliD flagellar capping protein; Validated
Probab=29.75 E-value=71 Score=35.41 Aligned_cols=48 Identities=19% Similarity=0.298 Sum_probs=37.1
Q ss_pred eEEEEEeCCEEEEEEEcCCCCHHHHHHHHhcc-----------cCCCccCcEEeccCccc
Q 018493 56 IRVRVKYGSIYHEIHINSQATFGELKKLLTGP-----------TGLHHEDQKLIYKDKER 104 (355)
Q Consensus 56 I~V~VK~gg~~~~V~V~~~sTVgdLK~~I~e~-----------TGVppe~QKLIykGK~l 104 (355)
..+.+.++|+.|.|+|++.+|+.+|+++|=.. +| ...-.+|+++|+..
T Consensus 129 ~~~~~~~~G~~~sIdi~~gtTL~~L~~~INd~~n~~V~Asiv~tG-~~~~y~L~l~s~et 187 (673)
T PRK08453 129 TTLKFYTQGKDYAIDIKAGMTLGDVAQSITDATNGEVMGIVMKTG-GNDPYQLMINSKNT 187 (673)
T ss_pred ceEEEEECCEEEEEEeCCCCcHHHHHHHhcCCCCCCeEEEEEecC-CCccEEEEEeccCc
Confidence 45777889999999999999999999999843 33 11246777777763
No 155
>PF05531 NPV_P10: Nucleopolyhedrovirus P10 protein; InterPro: IPR008702 This family consists of several nucleopolyhedrovirus P10 proteins which are thought to be involved in the morphogenesis of the polyhedra [].; GO: 0019028 viral capsid
Probab=27.49 E-value=91 Score=25.27 Aligned_cols=21 Identities=19% Similarity=0.379 Sum_probs=10.7
Q ss_pred HHHHHHHHhhhhHHHHHHHHH
Q 018493 152 EISLEVDRLAGQVSALESIIT 172 (355)
Q Consensus 152 ~V~~eVDkLa~ev~~LE~~I~ 172 (355)
-|+.++..+..+|.+|+..+.
T Consensus 8 ~Ir~dIk~vd~KVdaLq~~V~ 28 (75)
T PF05531_consen 8 VIRQDIKAVDDKVDALQTQVD 28 (75)
T ss_pred HHHHHHHHHHHHHHHHHHHHH
Confidence 344444445555555555544
No 156
>cd01760 RBD Ubiquitin-like domain of RBD-like S/T kinases. The ras-binding domain (RBD) of the serine/threonine kinase raf is structurally quite similar to the beta-grasp fold of ubiquitin. A raf-like RBD is also present in RGS12 and other members of a family of GTPase activating proteins and TIAM1, a guanine nucleotide exchange protein.
Probab=26.87 E-value=1.6e+02 Score=23.27 Aligned_cols=39 Identities=8% Similarity=0.032 Sum_probs=33.8
Q ss_pred CEEEEEEEcCCCCHHHHHHHHhcccCCCccCcEEeccCc
Q 018493 64 SIYHEIHINSQATFGELKKLLTGPTGLHHEDQKLIYKDK 102 (355)
Q Consensus 64 g~~~~V~V~~~sTVgdLK~~I~e~TGVppe~QKLIykGK 102 (355)
|....|.|.+..|+.|+=..+.++-|+.++.-.|.+.|.
T Consensus 9 g~~t~V~vrpg~ti~d~L~~~c~kr~l~~~~~~v~~~~~ 47 (72)
T cd01760 9 GQRTVVPVRPGMSVRDVLAKACKKRGLNPECCDVFLLGL 47 (72)
T ss_pred CCeEEEEECCCCCHHHHHHHHHHHcCCCHHHEEEEEecC
Confidence 456678999999999999999999999999888877653
No 157
>KOG3192 consensus Mitochondrial J-type chaperone [Posttranslational modification, protein turnover, chaperones]
Probab=26.13 E-value=4.1e+02 Score=24.69 Aligned_cols=82 Identities=20% Similarity=0.244 Sum_probs=53.6
Q ss_pred hhhhHHHHHHHHHHhhhhHHHHHHHHH-hCCCcchhhHhhHHHHHHHHHHhccCC---CCChhhHHHHHHHHHHHHHHHH
Q 018493 146 ASKSISEISLEVDRLAGQVSALESIIT-KGGKVAEKDVLNLIELLMNQLLKLDGI---MADGDVKLQRKMQVRRVQKYVE 221 (355)
Q Consensus 146 a~~aIs~V~~eVDkLa~ev~~LE~~I~-~g~Kv~eke~~~LsE~LMq~LLKLD~I---eaeGdaR~qRK~~VkrVQ~~Le 221 (355)
+.+..+.+....+.|.+-+..-+..+. .|--..+.++.+=-|.||..|.-=++| .-+.+.++-++..-.||+.+.+
T Consensus 54 a~eqSa~lnkAY~TLk~pL~RA~Yilkl~g~e~~sne~stDpe~Lmevle~~E~IS~~~De~~l~~lk~q~q~ri~q~~~ 133 (168)
T KOG3192|consen 54 ASEQSAELNKAYDTLKDPLARARYLLKLKGQEQTSNELSTDPEFLMEVLEYHEAISEMDDEEDLKQLKSQNQERIAQCKQ 133 (168)
T ss_pred HHHHHHHHHHHHHHHHhHHHHHHHHHHHhCCCCchhhhccCHHHHHHHHHHHHHHHhccCcHHHHHHHHHHHHHHHHHHH
Confidence 344455555666666666666555443 233334555555558889888777777 3344789999999999999888
Q ss_pred HHHHhh
Q 018493 222 TLDMLK 227 (355)
Q Consensus 222 ~LD~lk 227 (355)
.|=..-
T Consensus 134 qlge~~ 139 (168)
T KOG3192|consen 134 QLGEAF 139 (168)
T ss_pred HHHHHH
Confidence 875543
No 158
>TIGR02978 phageshock_pspC phage shock protein C. All members of this protein family are the phage shock protein PspC. These proteins contain a PspC domain, as do other members of the larger family of proteins described by Pfam model pfam04024. The phage shock regulon is restricted to the Proteobacteria and somewhat sparsely distributed there. It is expressed, under positive control of a sigma-54-dependent transcription factor, PspF, which binds and is modulated by PspA. Stresses that induce the psp regulon include phage secretin overexpression, ethanol, heat shock, and protein export defects.
Probab=25.86 E-value=85 Score=27.34 Aligned_cols=38 Identities=16% Similarity=0.325 Sum_probs=30.2
Q ss_pred hhhhHHHHHHHHHHhhhhHHHHHHHHHhC-CCcchhhHhh
Q 018493 146 ASKSISEISLEVDRLAGQVSALESIITKG-GKVAEKDVLN 184 (355)
Q Consensus 146 a~~aIs~V~~eVDkLa~ev~~LE~~I~~g-~Kv~eke~~~ 184 (355)
+...+.++..++++++.++..+|.++.+. -++ ++|+..
T Consensus 82 ~~~~l~~~~~~~~~~e~Rl~~mE~yVTS~~f~l-~ref~~ 120 (121)
T TIGR02978 82 PRQALREVKREFRDLERRLRNMERYVTSDTFRL-RREFRN 120 (121)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhcCCCccH-HHHHhc
Confidence 45678999999999999999999988765 344 666654
No 159
>COG0089 RplW Ribosomal protein L23 [Translation, ribosomal structure and biogenesis]
Probab=25.78 E-value=96 Score=26.09 Aligned_cols=39 Identities=23% Similarity=0.147 Sum_probs=34.1
Q ss_pred EEEEEEEcCCCCHHHHHHHHhcccCCCccCcE-EeccCcc
Q 018493 65 IYHEIHINSQATFGELKKLLTGPTGLHHEDQK-LIYKDKE 103 (355)
Q Consensus 65 ~~~~V~V~~~sTVgdLK~~I~e~TGVppe~QK-LIykGK~ 103 (355)
..|.+.|++.+|=-++|+.+++.+||-+..-. |+.+|+.
T Consensus 22 nk~vF~V~~~AtK~~IK~AvE~lF~VkV~kVNTl~~k~k~ 61 (94)
T COG0089 22 NKYVFIVDPDATKPEIKAAVEELFGVKVEKVNTLNTKGKT 61 (94)
T ss_pred CEEEEEECCCCCHHHHHHHHHHHhCCeEEEEEEEEeCCcc
Confidence 56889999999999999999999999998876 5577765
No 160
>PF08337 Plexin_cytopl: Plexin cytoplasmic RasGAP domain; InterPro: IPR013548 This domain is found at C terminus of various plexins (e.g. P51805 from SWISSPROT). Plexins are receptors for semaphorins, and plexin signalling is important in pathfinding and patterning of both neurons and developing blood vessels [, ]. The cytoplasmic region, which has been called a SEX domain [], and is involved in downstream signalling pathways, by interaction with proteins such as Rac1, RhoD, Rnd1 and other plexins []. ; PDB: 3H6N_A 4E71_A 4E74_A 3IG3_A 2REX_C 2JPH_A 2R2O_A 3HM6_X 3SU8_X 3SUA_E ....
Probab=25.32 E-value=1.3e+02 Score=32.57 Aligned_cols=76 Identities=16% Similarity=0.143 Sum_probs=47.1
Q ss_pred CCCeeEEEEEeC---CEEEEEEEcCCCCHHHHHHHHhcc--cCCC------ccCcEEecc-C---cc-cCCc--------
Q 018493 52 PPPTIRVRVKYG---SIYHEIHINSQATFGELKKLLTGP--TGLH------HEDQKLIYK-D---KE-RDSK-------- 107 (355)
Q Consensus 52 ~~~~I~V~VK~g---g~~~~V~V~~~sTVgdLK~~I~e~--TGVp------pe~QKLIyk-G---K~-ldD~-------- 107 (355)
.-.+++|.|..+ ...++|.|-..+||..+|++|-.. -+.| +++.-|-++ | +. |.|.
T Consensus 186 d~~~ltl~v~~~~~~~~~i~VkVLdCDTItQVKeKiLDavyk~~p~S~rp~~~d~dLEwr~~~~~~~iL~D~D~ts~~~~ 265 (539)
T PF08337_consen 186 DYKTLTLNVVPQEEGSEEIPVKVLDCDTITQVKEKILDAVYKNTPYSQRPRADDVDLEWRQGRGGRLILQDEDSTSKVEG 265 (539)
T ss_dssp -S-EEEEEEECTTTSSTCEEEEEETTSBHHHHHHHHHHHHTTTS-GGGS--GGGEEEEEEETTSEEEEESSSSTTSEEET
T ss_pred ceEEEEEEEEecCCCCceEEEEEEecCcccHHHHHHHHHHHcCCCCCCCCCccccceeeecCCCCcccccCCCCCcccCC
Confidence 346778886642 355788888899999999998764 3443 234444321 2 21 3322
Q ss_pred -----hhhhhcCCCCCCEEEEeecC
Q 018493 108 -----AFLDVVGVKDKSKLVLVEDP 127 (355)
Q Consensus 108 -----~tLs~~GIKdgSkImLv~~p 127 (355)
.||..|||.||++|-|+...
T Consensus 266 ~wkrLNTL~HY~V~dga~vaLv~k~ 290 (539)
T PF08337_consen 266 GWKRLNTLAHYKVPDGATVALVPKQ 290 (539)
T ss_dssp TEEE--BHHHHT--TTEEEEEEES-
T ss_pred CceEeccHhhcCCCCCceEEEeecc
Confidence 37999999999999999754
No 161
>PF10790 DUF2604: Protein of Unknown function (DUF2604); InterPro: IPR019726 This entry represents bacterial proteins with undetermined function.
Probab=24.96 E-value=2e+02 Score=23.08 Aligned_cols=61 Identities=16% Similarity=0.127 Sum_probs=41.6
Q ss_pred EEEEEEEcCCCCHHHHHHHHhcc---cCCCccCcEEe-ccCcccCCchhhhhcCCCCCCEEEEee
Q 018493 65 IYHEIHINSQATFGELKKLLTGP---TGLHHEDQKLI-YKDKERDSKAFLDVVGVKDKSKLVLVE 125 (355)
Q Consensus 65 ~~~~V~V~~~sTVgdLK~~I~e~---TGVppe~QKLI-ykGK~ldD~~tLs~~GIKdgSkImLv~ 125 (355)
+-..|+.+....+--+....-+. .|-|++.=.|- -.|..+|-+..+.+||+.+|-+|+|.-
T Consensus 6 qPv~VEANvnaPLh~v~akALe~sgNvgQP~ENWElkDe~G~vlD~~kKveD~GftngvkLFLsL 70 (76)
T PF10790_consen 6 QPVQVEANVNAPLHPVRAKALEQSGNVGQPPENWELKDESGQVLDVNKKVEDFGFTNGVKLFLSL 70 (76)
T ss_pred CceeeecCCCCcchHHHHHHHhhccccCCCcccceeeccCCcEeeccchhhhccccccceEEEEe
Confidence 33445555566555555444443 45666665554 457779999999999999999999864
No 162
>PRK07696 sulfur carrier protein ThiS; Provisional
Probab=24.93 E-value=3.2e+02 Score=20.88 Aligned_cols=59 Identities=15% Similarity=0.044 Sum_probs=39.6
Q ss_pred EEeCCEEEEEEEcCC-CCHHHHHHHHhcccCCCccCcEEeccCcccCCchhhhhcCCCCCCEEEEee
Q 018493 60 VKYGSIYHEIHINSQ-ATFGELKKLLTGPTGLHHEDQKLIYKDKERDSKAFLDVVGVKDKSKLVLVE 125 (355)
Q Consensus 60 VK~gg~~~~V~V~~~-sTVgdLK~~I~e~TGVppe~QKLIykGK~ldD~~tLs~~GIKdgSkImLv~ 125 (355)
|.-.|+.+ +++.. .||.+|-+. .|+++...-+-++|.... ......+-|++||+|-++.
T Consensus 3 I~vNG~~~--~~~~~~~tv~~lL~~----l~~~~~~vav~vN~~iv~-r~~w~~~~L~~gD~iEIv~ 62 (67)
T PRK07696 3 LKINGNQI--EVPESVKTVAELLTH----LELDNKIVVVERNKDILQ-KDDHTDTSVFDGDQIEIVT 62 (67)
T ss_pred EEECCEEE--EcCCCcccHHHHHHH----cCCCCCeEEEEECCEEeC-HHHcCceecCCCCEEEEEE
Confidence 44455544 45554 578777654 577777777778888743 2335566799999998873
No 163
>KOG0007 consensus Splicing factor 3a, subunit 1 [RNA processing and modification]
Probab=24.79 E-value=35 Score=34.24 Aligned_cols=47 Identities=13% Similarity=0.093 Sum_probs=40.2
Q ss_pred eCCEEEEEEEc-CCCCHHHHHHHHhcccCCCccCcEEeccCcccCCch
Q 018493 62 YGSIYHEIHIN-SQATFGELKKLLTGPTGLHHEDQKLIYKDKERDSKA 108 (355)
Q Consensus 62 ~gg~~~~V~V~-~~sTVgdLK~~I~e~TGVppe~QKLIykGK~ldD~~ 108 (355)
.+|....+.+. ....+..||.++...++|++.-|++.|.|..+.|+.
T Consensus 290 ~dg~~~~~~~~~~~~~~~~~k~k~~~~~~i~~~~q~~~~~~~~l~d~~ 337 (341)
T KOG0007|consen 290 ADGQVIKITVQSLSENVASLKEKIADESQIPANKQKLRGEGAFLKDNR 337 (341)
T ss_pred CCCceeeeccccccccccccccccccccccchhheeeccCCcccCccc
Confidence 45666677766 567899999999999999999999999999987773
No 164
>PF11834 DUF3354: Domain of unknown function (DUF3354); InterPro: IPR021789 Potassium channels take part in important processes of higher plants, including opening and closing of stomatal pores and leaf movement. Inward rectifying potassium (K(+)in) channels play an important role in turgor regulation and ion uptake in higher plants. All of them comprise, from their N-terminal to their C-terminal ends: a short hydrophilic region, a hydrophobic region structurally analogous and partially homologous to the transmembrane domain of voltage-gated animal channels from the Shaker superfamily, a putative cyclic nucleotide-binding domain, and a conserved C-terminal KHA domain. Between these last two regions, some of them (AKT1, AKT2 and SKT1) contain an ankyrin-repeat domain with six repeats homologous to those of human erythrocyte ankyrin. This entry represents the KHA domain which is unique to plant K(+)in channels. The KHA domain contains two high-homology blocks enriched for hydrophobic and acidic residues, respectively. The KHA domain is essential for interaction of plant K(+)in channels. The KHA domain mediates tetramerization and/or stabilisation of the heteromers [, , ].
Probab=24.68 E-value=80 Score=24.95 Aligned_cols=45 Identities=24% Similarity=0.282 Sum_probs=30.6
Q ss_pred CCCHHHHHHHHhcccCCCccCcEEeccCcccCCchhhhhcCCCCCCEEEEe
Q 018493 74 QATFGELKKLLTGPTGLHHEDQKLIYKDKERDSKAFLDVVGVKDKSKLVLV 124 (355)
Q Consensus 74 ~sTVgdLK~~I~e~TGVppe~QKLIykGK~ldD~~tLs~~GIKdgSkImLv 124 (355)
..|+.+|.+..++++|+++. --+.-.|.+.+|=. =|.||+.|+++
T Consensus 25 P~SleeLl~ia~~kfg~~~~-~v~~~dgaeIdDI~-----~IRDgD~L~~~ 69 (69)
T PF11834_consen 25 PDSLEELLKIASEKFGFSAT-KVLNEDGAEIDDID-----VIRDGDHLYLV 69 (69)
T ss_pred CccHHHHHHHHHHHhCCCce-EEEcCCCCEEeEEE-----EEEcCCEEEEC
Confidence 36999999999999999632 12223344455433 35788888874
No 165
>PRK10697 DNA-binding transcriptional activator PspC; Provisional
Probab=24.28 E-value=99 Score=26.97 Aligned_cols=39 Identities=13% Similarity=0.206 Sum_probs=30.4
Q ss_pred hhhhhHHHHHHHHHHhhhhHHHHHHHHHhCC-CcchhhHhh
Q 018493 145 KASKSISEISLEVDRLAGQVSALESIITKGG-KVAEKDVLN 184 (355)
Q Consensus 145 ka~~aIs~V~~eVDkLa~ev~~LE~~I~~g~-Kv~eke~~~ 184 (355)
.+...+.++..++++++.++..+|.++.+.. ++ +.|+..
T Consensus 78 s~~~~l~~~~~~~~~~e~Rlr~mE~yVTS~~f~l-~ref~~ 117 (118)
T PRK10697 78 SSSELLDEVDRELAAGEQRLREMERYVTSDTFTL-RSRFRQ 117 (118)
T ss_pred CHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCcCH-HHHHhc
Confidence 3456788999999999999999999887753 44 666654
No 166
>cd01768 RA RA (Ras-associating) ubiquitin domain. The RA (Ras-associating) domain is structurally similar to ubiquitin and is present in one or two copies in a number of signalling molecules that bind and regulate a small GTPase called Ras or the Ras-related GTPases, Ral and Rap. RA-containing proteins include RalGDS, AF6, RIN1, RASSF1, SNX27, CYR1, STE50, and phospholipase C epsilon.
Probab=24.19 E-value=1.7e+02 Score=22.75 Aligned_cols=35 Identities=23% Similarity=0.388 Sum_probs=29.0
Q ss_pred CEEEEEEEcCCCCHHHHHHHHhcccCCC--ccCcEEe
Q 018493 64 SIYHEIHINSQATFGELKKLLTGPTGLH--HEDQKLI 98 (355)
Q Consensus 64 g~~~~V~V~~~sTVgdLK~~I~e~TGVp--pe~QKLI 98 (355)
+....|.|+.++|..++-..+.++.++. ++.-.|+
T Consensus 12 ~~~kti~V~~~~t~~~Vi~~~l~k~~l~~~~~~y~L~ 48 (87)
T cd01768 12 GTYKTLRVSKDTTAQDVIQQLLKKFGLDDDPEDYALV 48 (87)
T ss_pred ccEEEEEECCCCCHHHHHHHHHHHhCCcCCcccEEEE
Confidence 5567899999999999999999999998 4455554
No 167
>PF00794 PI3K_rbd: PI3-kinase family, ras-binding domain; InterPro: IPR000341 Phosphatidylinositol 3-kinase (PI3K) (2.7.1.137 from EC) is an enzyme that phosphorylates phosphoinositides on the 3-hydroxyl group of the inositol ring. A subset of PI3Ks has the capacity to bind and be activated by the GTP-bound small GTPase p21Ras (Ras). PI3Ks are recognised as one of the principal effectors of Ras signalling to the cell-cycle control machinery. In the structure of the Ras-PI3K gamma complex, contacts between the two molecules are made primarily via the so-called switch I region of Ras and the PI3K RBD. The RBD fold comprises a five-stranded mixed beta-sheet, flanked by two alpha-helices. Interaction between Ras and the PI3K RBD is primarily polar in character and, as characterised by kinetic measurements, is reversible and transient [].; GO: 0016303 1-phosphatidylinositol-3-kinase activity, 0005942 phosphatidylinositol 3-kinase complex; PDB: 2RD0_A 3HIZ_A 3HHM_A 1E8W_A 1E8X_A 1E7V_A 1E90_A 1E7U_A 2Y3A_A 3L54_A ....
Probab=23.74 E-value=3.4e+02 Score=22.22 Aligned_cols=62 Identities=18% Similarity=0.098 Sum_probs=39.0
Q ss_pred CCCeeEEEEEeC--CEEEEEEEcCCCCHHHHHHHHhcc--cCCCcc----CcEEeccCcc--cCCchhhhhc
Q 018493 52 PPPTIRVRVKYG--SIYHEIHINSQATFGELKKLLTGP--TGLHHE----DQKLIYKDKE--RDSKAFLDVV 113 (355)
Q Consensus 52 ~~~~I~V~VK~g--g~~~~V~V~~~sTVgdLK~~I~e~--TGVppe----~QKLIykGK~--ldD~~tLs~~ 113 (355)
....|.|.|.+. ...+.+.++.++|+.+|-..+-.. .++.+. +--|=-.|+. +-.+.+|.+|
T Consensus 13 ~~~~i~v~v~~~~~~~~~t~~~~~~~t~~~li~~~l~k~~~~~~~~~~~~dyvLKV~G~~EyL~g~~~L~~y 84 (106)
T PF00794_consen 13 QNNKIKVSVHFENSQQSFTFQVDPNSTPEELIAQALKKKLKDLLPPDPEDDYVLKVCGREEYLLGDHPLSQY 84 (106)
T ss_dssp SSSEEEEEEEETTCSEEEEEEEETTS-HHHHHHHHHHHHHHHTT-CHHHHGEEEEETTSSEEE-SSS-GGGB
T ss_pred CCCeEEEEEEEcCCCcEEEEEECCCCCHHHHHHHHHHHHHhhcCCcccccCEEEEecCceEEeeCCeeeecc
Confidence 345788888876 578899999999999998777666 222222 2333344554 5566666665
No 168
>PF08149 BING4CT: BING4CT (NUC141) domain; InterPro: IPR012952 WD-40 repeats (also known as WD or beta-transducin repeats) are short ~40 amino acid motifs, often terminating in a Trp-Asp (W-D) dipeptide. WD40 repeats usually assume a 7-8 bladed beta-propeller fold, but proteins have been found with 4 to 16 repeated units, which also form a circularised beta-propeller structure. WD-repeat proteins are a large family found in all eukaryotes and are implicated in a variety of functions ranging from signal transduction and transcription regulation to cell cycle control and apoptosis. Repeated WD40 motifs act as a site for protein-protein interaction, and proteins containing WD40 repeats are known to serve as platforms for the assembly of protein complexes or mediators of transient interplay among other proteins. The specificity of the proteins is determined by the sequences outside the repeats themselves. Examples of such complexes are G proteins (beta subunit is a beta-propeller), TAFII transcription factor, and E3 ubiquitin ligase [, ]. In Arabidopsis spp., several WD40-containing proteins act as key regulators of plant-specific developmental events. This C-terminal domain is found in the BING4 family of nucleolar WD40 repeat proteins [].
Probab=23.30 E-value=67 Score=26.37 Aligned_cols=26 Identities=31% Similarity=0.529 Sum_probs=18.2
Q ss_pred ccCCCCCh-hhHHHHHHHHHHHHHHHHHH
Q 018493 196 LDGIMADG-DVKLQRKMQVRRVQKYVETL 223 (355)
Q Consensus 196 LD~IeaeG-daR~qRK~~VkrVQ~~Le~L 223 (355)
.|+.+++- +-|.|||+ ++|+.+||+|
T Consensus 45 fDs~e~NP~et~kqRrE--~EV~~LLeKi 71 (80)
T PF08149_consen 45 FDSLEANPFETKKQRRE--REVRSLLEKI 71 (80)
T ss_pred CCcccCCcccchhHHhH--HHHHHHHHhC
Confidence 46666554 56777776 4688888876
No 169
>COG5100 NPL4 Nuclear pore protein [Nuclear structure]
Probab=23.29 E-value=1.8e+02 Score=30.84 Aligned_cols=60 Identities=13% Similarity=0.111 Sum_probs=44.1
Q ss_pred EEEEEEcCCCCHHHHHHHHhcc--cCCCccCcEEec----cCcc--cCCchhhhhcCCCCCCEEEEee
Q 018493 66 YHEIHINSQATFGELKKLLTGP--TGLHHEDQKLIY----KDKE--RDSKAFLDVVGVKDKSKLVLVE 125 (355)
Q Consensus 66 ~~~V~V~~~sTVgdLK~~I~e~--TGVppe~QKLIy----kGK~--ldD~~tLs~~GIKdgSkImLv~ 125 (355)
.+.+++.++++++.|-.+|-.- -+..|+...+.- +|-. +..+.++.++|+++|+-|+|--
T Consensus 11 ~~Rve~qe~d~lg~l~~kll~~~~~n~~~e~~svc~~p~~qG~~~s~l~dqt~~dlGL~hGqmLyl~y 78 (571)
T COG5100 11 QRRVEVQESDVLGMLSPKLLAFFEVNYSPEQISVCSAPDGQGEIFSLLKDQTPDDLGLRHGQMLYLEY 78 (571)
T ss_pred ceeeeccccchhhhhhHHHHhhhccCCCccceEEEeCCCCCceeeecccccChhhhccccCcEEEEEe
Confidence 4678899999999988777654 345566555542 3332 5677899999999999998853
No 170
>PF10459 Peptidase_S46: Peptidase S46; InterPro: IPR019500 In the MEROPS database peptidases and peptidase homologues are grouped into clans and families. Clans are groups of families for which there is evidence of common ancestry based on a common structural fold: Each clan is identified with two letters, the first representing the catalytic type of the families included in the clan (with the letter 'P' being used for a clan containing families of more than one of the catalytic types serine, threonine and cysteine). Some families cannot yet be assigned to clans, and when a formal assignment is required, such a family is described as belonging to clan A-, C-, M-, N-, S-, T- or U-, according to the catalytic type. Some clans are divided into subclans because there is evidence of a very ancient divergence within the clan, for example MA(E), the gluzincins, and MA(M), the metzincins. Peptidase families are grouped by their catalytic type, the first character representing the catalytic type: A, aspartic; C, cysteine; G, glutamic acid; M, metallo; N, asparagine; S, serine; T, threonine; and U, unknown. The serine, threonine and cysteine peptidases utilise the amino acid as a nucleophile and form an acyl intermediate - these peptidases can also readily act as transferases. In the case of aspartic, glutamic and metallopeptidases, the nucleophile is an activated water molecule. In the case of the asparagine endopeptidases, the nucleophile is asparagine and all are self-processing endopeptidases. In many instances the structural protein fold that characterises the clan or family may have lost its catalytic activity, yet retain its function in protein recognition and binding. Proteolytic enzymes that exploit serine in their catalytic activity are ubiquitous, being found in viruses, bacteria and eukaryotes []. They include a wide range of peptidase activity, including exopeptidase, endopeptidase, oligopeptidase and omega-peptidase activity. Over 20 families (denoted S1 - S66) of serine protease have been identified, these being grouped into clans on the basis of structural similarity and other functional evidence []. Structures are known for members of the clans and the structures indicate that some appear to be totally unrelated, suggesting different evolutionary origins for the serine peptidases []. Not withstanding their different evolutionary origins, there are similarities in the reaction mechanisms of several peptidases. Chymotrypsin, subtilisin and carboxypeptidase C have a catalytic triad of serine, aspartate and histidine in common: serine acts as a nucleophile, aspartate as an electrophile, and histidine as a base []. The geometric orientations of the catalytic residues are similar between families, despite different protein folds []. The linear arrangements of the catalytic residues commonly reflect clan relationships. For example the catalytic triad in the chymotrypsin clan (PA) is ordered HDS, but is ordered DHS in the subtilisin clan (SB) and SDH in the carboxypeptidase clan (SC) [, ]. This entry represents S46 peptidases, where dipeptidyl-peptidase 7 (DPP-7) is the best-characterised member of this family. It is a serine peptidase that is located on the cell surface and is predicted to have two N-terminal transmembrane domains.
Probab=22.91 E-value=3.9e+02 Score=29.94 Aligned_cols=28 Identities=14% Similarity=0.166 Sum_probs=23.0
Q ss_pred CchhhhhcCCCCCCEEEEeecCCchHHH
Q 018493 106 SKAFLDVVGVKDKSKLVLVEDPISQEKR 133 (355)
Q Consensus 106 D~~tLs~~GIKdgSkImLv~~p~s~E~~ 133 (355)
.-.+++.-|+|+|+-+|++|-|++..+-
T Consensus 229 ~~l~is~~G~keGD~vmv~GyPG~T~Ry 256 (698)
T PF10459_consen 229 HFLKISLKGVKEGDFVMVAGYPGRTNRY 256 (698)
T ss_pred cccccCCCCCCCCCeEEEccCCCccccc
Confidence 3456788899999999999999876654
No 171
>KOG4829 consensus Uncharacterized conserved protein [Function unknown]
Probab=22.91 E-value=2.2e+02 Score=27.36 Aligned_cols=70 Identities=14% Similarity=0.256 Sum_probs=45.6
Q ss_pred HHHHHhhhhH-HHHHHHHHhCCCcchhhHhhHHHHHHHHHHhcc-CCCCCh-hhHHHHHHHHHHHHHHHHHHH
Q 018493 155 LEVDRLAGQV-SALESIITKGGKVAEKDVLNLIELLMNQLLKLD-GIMADG-DVKLQRKMQVRRVQKYVETLD 224 (355)
Q Consensus 155 ~eVDkLa~ev-~~LE~~I~~g~Kv~eke~~~LsE~LMq~LLKLD-~IeaeG-daR~qRK~~VkrVQ~~Le~LD 224 (355)
-++|+|.++. ..+-.+.......+..++..++|-||+.|=+=- .++-++ ++.+--+.+|+|+-++|.-+|
T Consensus 164 fd~dkipde~~~tlL~Yl~~lQG~are~~~q~aE~i~~eldeEG~~~~de~e~~~~~~~~~~qR~r~lLq~~~ 236 (236)
T KOG4829|consen 164 FDLDKIPDEYNDTLLLYLRDLQGKAREELIQAAEPINGELDEEGKEVQDEQEEVQMPNKELVQRSRKLLQIWK 236 (236)
T ss_pred hhhcccchhHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHHHhccCCCCChHHHhhcchHHHHHHHHHHHHhhC
Confidence 3456666654 344445555545557788899999999764321 123344 567778889999999987654
No 172
>PRK11840 bifunctional sulfur carrier protein/thiazole synthase protein; Provisional
Probab=22.90 E-value=2.3e+02 Score=28.85 Aligned_cols=59 Identities=14% Similarity=0.128 Sum_probs=42.8
Q ss_pred EEEeCCEEEEEEEcCCCCHHHHHHHHhcccCCCccCcEEeccCcccCCchhhhhcCCCCCCEEEEe
Q 018493 59 RVKYGSIYHEIHINSQATFGELKKLLTGPTGLHHEDQKLIYKDKERDSKAFLDVVGVKDKSKLVLV 124 (355)
Q Consensus 59 ~VK~gg~~~~V~V~~~sTVgdLK~~I~e~TGVppe~QKLIykGK~ldD~~tLs~~GIKdgSkImLv 124 (355)
+|.-+|+. ++++...|+.+|-+. .+++++..-+.++|.... .....++-|++||+|-++
T Consensus 2 ~I~VNGk~--~el~e~~TL~dLL~~----L~i~~~~VAVeVNgeIVp-r~~w~~t~LkeGD~IEII 60 (326)
T PRK11840 2 RIRLNGEP--RQVPAGLTIAALLAE----LGLAPKKVAVERNLEIVP-RSEYGQVALEEGDELEIV 60 (326)
T ss_pred EEEECCEE--EecCCCCcHHHHHHH----cCCCCCeEEEEECCEECC-HHHcCccccCCCCEEEEE
Confidence 34445554 456677888887665 588888888899999864 333556679999999887
No 173
>smart00455 RBD Raf-like Ras-binding domain.
Probab=21.97 E-value=2.4e+02 Score=21.96 Aligned_cols=45 Identities=13% Similarity=0.062 Sum_probs=35.9
Q ss_pred CEEEEEEEcCCCCHHHHHHHHhcccCCCccCcEEeccC--cccCCch
Q 018493 64 SIYHEIHINSQATFGELKKLLTGPTGLHHEDQKLIYKD--KERDSKA 108 (355)
Q Consensus 64 g~~~~V~V~~~sTVgdLK~~I~e~TGVppe~QKLIykG--K~ldD~~ 108 (355)
+....|.+-+..|+.|+=..+.++-|+.++.-.|...| +.++-+.
T Consensus 9 ~~~~~V~vrpg~tl~e~L~~~~~kr~l~~~~~~v~~~g~~k~ldl~~ 55 (70)
T smart00455 9 NQRTVVKVRPGKTVRDALAKALKKRGLNPECCVVRLRGEKKPLDLNQ 55 (70)
T ss_pred CCEEEEEECCCCCHHHHHHHHHHHcCCCHHHEEEEEcCCCcceecCC
Confidence 45567888899999999999999999999988888755 3354443
No 174
>KOG2689 consensus Predicted ubiquitin regulatory protein [Posttranslational modification, protein turnover, chaperones]
Probab=21.82 E-value=1.9e+02 Score=28.93 Aligned_cols=70 Identities=11% Similarity=0.113 Sum_probs=53.7
Q ss_pred CeeEEEEEe-CCEEEEEEEcCCCCHHHHHHHHhcccCCCccCcEEeccCcc------cCCchhhhhcCCCCCCEEEEe
Q 018493 54 PTIRVRVKY-GSIYHEIHINSQATFGELKKLLTGPTGLHHEDQKLIYKDKE------RDSKAFLDVVGVKDKSKLVLV 124 (355)
Q Consensus 54 ~~I~V~VK~-gg~~~~V~V~~~sTVgdLK~~I~e~TGVppe~QKLIykGK~------ldD~~tLs~~GIKdgSkImLv 124 (355)
...+|-|++ .|.+....|++..|+..|+.-|...+|...+=..| +.|-. -|...+|..+|+-+.+.|+|-
T Consensus 209 s~crlQiRl~DG~Tl~~tF~a~E~L~~VR~wVd~n~~~~~~P~~f-~t~fPR~tf~edD~~KpLq~L~L~Psa~lil~ 285 (290)
T KOG2689|consen 209 SQCRLQIRLPDGQTLTQTFNARETLAAVRLWVDLNRGDGLDPYSF-HTGFPRVTFTEDDELKPLQELDLVPSAVLILE 285 (290)
T ss_pred cceEEEEEcCCCCeeeeecCchhhHHHHHHHHHHhccCCCCCeee-ecCCCceecccccccccHHHhccccchheecc
Confidence 347777777 77888999999999999999999998887643333 33322 244578999999999988773
No 175
>cd06403 PB1_Par6 The PB1 domain is an essential part of Par6 protein which in complex with Par3 and aPKC proteins is crucial for establishment of apical-basal polarity of animal cells. The PB1 domain is a modular domain mediating specific protein-protein interactions which play a role in many critical cell processes. A canonical PB1-PB1 interaction, which involves heterodimerization of two PB1 domains, is required for the formation of macromolecular signaling complexes ensuring specificity and fidelity during cellular signaling. The interaction between two PB1 domain depends on the type of PB1. There are three types of PB1 domains: type I which contains an OPCA motif, acidic aminoacid cluster, type II which contains a basic cluster, and type I/II which contains both an OPCA motif and a basic cluster. Interactions of PB1 domains with other protein domains have been described as noncanonical PB1-interactions. The PB1 domain module is conserved in amoebas, fungi, animals, and plants. The
Probab=21.52 E-value=2e+02 Score=23.63 Aligned_cols=46 Identities=20% Similarity=0.398 Sum_probs=37.1
Q ss_pred eEEEEEeCCEEEEEEEcCC--CCHHHHHHHHhcccCCCccCcEEeccC
Q 018493 56 IRVRVKYGSIYHEIHINSQ--ATFGELKKLLTGPTGLHHEDQKLIYKD 101 (355)
Q Consensus 56 I~V~VK~gg~~~~V~V~~~--sTVgdLK~~I~e~TGVppe~QKLIykG 101 (355)
+.|+.|++++..-+.++.+ .++.+|...|+....|+.-..-|-|..
T Consensus 1 veVKSkfdaEfRRFsl~r~~~~~f~ef~~ll~~lH~l~~~~f~i~Y~D 48 (80)
T cd06403 1 VEVKSKFDAEFRRFSLDRNKPGKFEDFYKLLEHLHHIPNVDFLIGYTD 48 (80)
T ss_pred CceecccCCeEEEEEeccccCcCHHHHHHHHHHHhCCCCCcEEEEEeC
Confidence 3578889998888888876 799999999999999887655555643
No 176
>cd01764 Urm1 Urm1-like ubuitin domain. Urm1 (Ubiquitin-Related Modifier1) The Urm1 fold, like those of two closely related proteins MoaD (molybdopterin synthase) and ThiS (sulfur carrier protein), is similar to that of ubiquitin although there is little or no sequence similarity. The C-terminal glycines of Urm1 are conjugated to an E1-like protein Uba4 as part of a novel conjugation system in yeast. The Urm1 fold is found only in eukaryotes.
Probab=21.43 E-value=2.3e+02 Score=23.27 Aligned_cols=59 Identities=15% Similarity=0.216 Sum_probs=35.8
Q ss_pred EEEEEEEc--CCCCHHHHHHHHhcccCCCccCcEEecc-Ccc------cC---Cchhh--hhcCCCCCCEEEEee
Q 018493 65 IYHEIHIN--SQATFGELKKLLTGPTGLHHEDQKLIYK-DKE------RD---SKAFL--DVVGVKDKSKLVLVE 125 (355)
Q Consensus 65 ~~~~V~V~--~~sTVgdLK~~I~e~TGVppe~QKLIyk-GK~------ld---D~~tL--s~~GIKdgSkImLv~ 125 (355)
+.|.+.++ ..+||++|=+.|.+.. +..+-.|+.. |+. +- |-..| .++-+++|+.|.++.
T Consensus 17 ~~~~~~~~~~~~~tV~dll~~L~~~~--~~~~~~lf~~~g~lr~~i~VlvN~~di~~l~g~~t~L~dgD~v~i~P 89 (94)
T cd01764 17 KEHHVVLDGEKPVTVGDLLDYVASNL--LEERPDLFIEGGSVRPGIIVLINDTDWELLGEEDYILEDGDHVVFIS 89 (94)
T ss_pred eEEEEeccCCCCCcHHHHHHHHHHhC--chhhhhhEecCCcccCCEEEEECCccccccCCcccCCCCcCEEEEEC
Confidence 34555555 4679999999998766 3334444432 211 21 22334 356799999998874
No 177
>smart00144 PI3K_rbd PI3-kinase family, Ras-binding domain. Certain members of the PI3K family possess Ras-binding domains in their N-termini. These regions show some similarity (although not highly significant similarity) to Ras-binding RA domains (unpublished observation).
Probab=21.00 E-value=2.5e+02 Score=23.50 Aligned_cols=35 Identities=11% Similarity=0.059 Sum_probs=27.6
Q ss_pred CCeeEEEEEeC--CEEEEEEEcCCCCHHHHHHHHhcc
Q 018493 53 PPTIRVRVKYG--SIYHEIHINSQATFGELKKLLTGP 87 (355)
Q Consensus 53 ~~~I~V~VK~g--g~~~~V~V~~~sTVgdLK~~I~e~ 87 (355)
...|.|.|.+. ...+.+.+++++|+.+|.+.+-.+
T Consensus 15 ~~~i~v~i~~~~~~~~~t~~v~~~~~p~~li~~~l~k 51 (108)
T smart00144 15 ANKILIVVHLEKDQQTKTLKVNPNCTPDSVLAQAFTK 51 (108)
T ss_pred CCeEEEEEEEccCceeEEEEECCCCCHHHHHHHHHHH
Confidence 34677888775 477899999999999998876665
No 178
>PF08825 E2_bind: E2 binding domain; InterPro: IPR014929 E1 and E2 enzymes play a central role in ubiquitin and ubiquitin-like protein transfer cascades. This is an E2 binding domain that is found on NEDD8 activating E1 enzyme. The protein resembles ubiquitin, and recruits the catalytic core of the E2 enzyme Ubc12 in a similar manner to that in which ubiquitin interacts with ubiquitin binding domains []. ; GO: 0005524 ATP binding, 0016881 acid-amino acid ligase activity, 0045116 protein neddylation; PDB: 3GZN_D 3DBL_F 1R4N_H 1R4M_D 2NVU_B 1TT5_D 3DBR_D 3DBH_H 1YOV_B 3FN1_A ....
Probab=20.98 E-value=75 Score=25.92 Aligned_cols=56 Identities=13% Similarity=0.221 Sum_probs=39.2
Q ss_pred EEEcCCCCHHHHHHHHhcccCCC-------ccCcEEeccCcc-c------CCchhhhhcCCCCCCEEEEee
Q 018493 69 IHINSQATFGELKKLLTGPTGLH-------HEDQKLIYKDKE-R------DSKAFLDVVGVKDKSKLVLVE 125 (355)
Q Consensus 69 V~V~~~sTVgdLK~~I~e~TGVp-------pe~QKLIykGK~-l------dD~~tLs~~GIKdgSkImLv~ 125 (355)
|+|+++.|+.+|-+.|++.-.+. -..-.|++.+-. + .=+.+|.++ +.+|..|++..
T Consensus 1 i~v~~~~TL~~lid~L~~~~~~qlk~PSlt~~~k~LYm~~pp~Lee~Tr~NL~k~l~eL-~~~g~ei~VtD 70 (84)
T PF08825_consen 1 IEVSPSWTLQDLIDSLCEKPEFQLKKPSLTTANKTLYMQSPPSLEEATRPNLSKKLKEL-LSDGEEITVTD 70 (84)
T ss_dssp EEESTTSBSHHHHHHHHHSTTT--SS-EEESSEEEEEESSSHHHHHHTGGGGSSBTTTT-HHSSEEEEEEE
T ss_pred CCcCccchHHHHHHHHHhChhhhcCCCcccCCCceEEEeCCHHHHHHhhhhhhhhHHHH-hcCCCEEEEEC
Confidence 57899999999999999884332 234556665541 1 123568888 89999888854
No 179
>CHL00030 rpl23 ribosomal protein L23
Probab=20.91 E-value=1.4e+02 Score=24.82 Aligned_cols=40 Identities=18% Similarity=0.080 Sum_probs=34.6
Q ss_pred EEEEEEEcCCCCHHHHHHHHhcccCCCccCcE-EeccCccc
Q 018493 65 IYHEIHINSQATFGELKKLLTGPTGLHHEDQK-LIYKDKER 104 (355)
Q Consensus 65 ~~~~V~V~~~sTVgdLK~~I~e~TGVppe~QK-LIykGK~l 104 (355)
..|.+.|+..+|=.++|+.|+...||.+..-. ++..||.+
T Consensus 20 n~y~F~V~~~anK~eIK~avE~lf~VkV~~VNt~~~~~k~k 60 (93)
T CHL00030 20 NQYTFDVDSGSTKTEIKHWIELFFGVKVIAVNSHRLPRKKR 60 (93)
T ss_pred CEEEEEECCCCCHHHHHHHHHHHhCCeEEEEEEEEcCCCcc
Confidence 57899999999999999999999999988766 45777754
No 180
>PF09429 Wbp11: WW domain binding protein 11; InterPro: IPR019007 Synonym(s): Rsp5 or WWP domain The WW domain is a short conserved region in a number of unrelated proteins, which folds as a stable, triple stranded beta-sheet. This short domain of approximately 40 amino acids, may be repeated up to four times in some proteins [, , , ]. The name WW or WWP derives from the presence of two signature tryptophan residues that are spaced 20-23 amino acids apart and are present in most WW domains known to date, as well as that of a conserved Pro. The WW domain binds to proteins with particular proline-motifs, [AP]-P-P-[AP]-Y, and/or phosphoserine- phosphothreonine-containing motifs [, ]. It is frequently associated with other domains typical for proteins in signal transduction processes. A large variety of proteins containing the WW domain are known. These include; dystrophin, a multidomain cytoskeletal protein; utrophin, a dystrophin-like protein of unknown function; vertebrate YAP protein, substrate of an unknown serine kinase; Mus musculus (Mouse) NEDD-4, involved in the embryonic development and differentiation of the central nervous system; Saccharomyces cerevisiae (Baker's yeast) RSP5, similar to NEDD-4 in its molecular organisation; Rattus norvegicus (Rat) FE65, a transcription-factor activator expressed preferentially in liver; Nicotiana tabacum (Common tobacco) DB10 protein, amongst others. This entry represents WW domain-binding protein 11, which may play a role in the regulation of pre-mRNA processing. ; GO: 0006396 RNA processing
Probab=20.81 E-value=1.1e+02 Score=24.47 Aligned_cols=30 Identities=20% Similarity=0.405 Sum_probs=13.3
Q ss_pred HHHHHHhccCCCCChhhHHHHHHHHHHHHH
Q 018493 189 LMNQLLKLDGIMADGDVKLQRKMQVRRVQK 218 (355)
Q Consensus 189 LMq~LLKLD~IeaeGdaR~qRK~~VkrVQ~ 218 (355)
|..+|.+||.++..|......+...+.++.
T Consensus 42 l~~ei~~L~~~e~~~~l~~~~k~~l~~Le~ 71 (78)
T PF09429_consen 42 LQEEIDKLEEMEFNGKLSKVEKEKLKKLEK 71 (78)
T ss_pred HHHHHHHHHHHHhCCCCCHHHHHHHHHHHH
Confidence 444455555555545433333333333333
No 181
>PF07028 DUF1319: Protein of unknown function (DUF1319); InterPro: IPR010746 This entry is represented by Commelina yellow mottle virus, Orf1. The characteristics of the protein distribution suggest prophage matches in addition to the phage matches. This family contains a number of viral proteins of unknown function approximately 200 residues long. Family members seem to be restricted to badnaviruses.
Probab=20.75 E-value=5.4e+02 Score=22.85 Aligned_cols=58 Identities=26% Similarity=0.416 Sum_probs=31.1
Q ss_pred HHhhhhhhhhhhh-hHHHHHHHHHHhhhhHHHHHH------------------HHHhCCCcchhhHhhHHHHHHHHH
Q 018493 136 EMRKNAKLEKASK-SISEISLEVDRLAGQVSALES------------------IITKGGKVAEKDVLNLIELLMNQL 193 (355)
Q Consensus 136 e~kk~k~ieka~~-aIs~V~~eVDkLa~ev~~LE~------------------~I~~g~Kv~eke~~~LsE~LMq~L 193 (355)
+.+...+|.+..+ .+..+...+|.|..++.+|.. .|+.-||.-|++-..|+|.|-+.+
T Consensus 47 ~lk~~~ki~~~Qr~~l~~l~~~l~~l~~eL~~Lr~~~l~rRPLtk~dVeeLV~~IseQPK~IEkQte~LteEL~kkV 123 (126)
T PF07028_consen 47 ELKNLSKIQESQRSELKELKQELDVLSKELQALRKEYLERRPLTKEDVEELVLRISEQPKFIEKQTEALTEELTKKV 123 (126)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHhCcHHHHHHHHHHHHHHHHHH
Confidence 3333444444322 255555666666666655543 344456666667666666665543
No 182
>PF09269 DUF1967: Domain of unknown function (DUF1967); InterPro: IPR015349 The Obg family comprises a group of ancient P-loop small G proteins (GTPases) belonging to the TRAFAC (for translation factors) class and can be subdivided into several distinct protein subfamilies []. OBG GTPases have been found in both prokaryotes and eukaryotes []. The structure of the OBG GTPase from Thermus thermophilus has been determined []. This entry represents a C-terminal domain found in certain OBG GTPases. This domain contains a four-stranded beta sheet and three alpha helices flanked by an additional beta strand. It is predominantly found in the bacterial GTP-binding protein Obg, and is functionally uncharacterised. ; GO: 0000166 nucleotide binding; PDB: 1UDX_A.
Probab=20.33 E-value=63 Score=25.15 Aligned_cols=17 Identities=18% Similarity=0.302 Sum_probs=11.9
Q ss_pred chhhhhcCCCCCCEEEE
Q 018493 107 KAFLDVVGVKDKSKLVL 123 (355)
Q Consensus 107 ~~tLs~~GIKdgSkImL 123 (355)
...|...|+++|++|.+
T Consensus 46 ~~~L~~~G~~~GD~V~I 62 (69)
T PF09269_consen 46 EKALRKAGAKEGDTVRI 62 (69)
T ss_dssp HHHHHTTT--TT-EEEE
T ss_pred HHHHHHcCCCCCCEEEE
Confidence 56799999999999976
Done!