Query 018493
Match_columns 355
No_of_seqs 265 out of 1066
Neff 4.8
Searched_HMMs 29240
Date Mon Mar 25 16:07:03 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/018493.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/018493hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 1m62_A BAG-family molecular ch 99.8 1.3E-18 4.6E-23 140.5 8.3 74 146-225 9-84 (87)
2 1wgg_A Ubiquitin carboxyl-term 99.7 3E-18 1E-22 139.0 8.5 76 52-128 4-80 (96)
3 1uk5_A BAG-family molecular ch 99.7 3.7E-18 1.3E-22 143.3 9.0 78 146-229 28-107 (111)
4 1m7k_A Silencer of death domai 99.7 4E-18 1.4E-22 140.6 8.3 75 145-225 21-97 (99)
5 1v5t_A 8430435I17RIK protein; 99.7 4.6E-18 1.6E-22 135.8 7.9 77 52-128 4-84 (90)
6 3a8y_C BAG family molecular ch 99.7 1.6E-17 5.3E-22 144.4 9.0 82 146-233 32-115 (142)
7 1v86_A DNA segment, CHR 7, way 99.7 1.9E-17 6.4E-22 133.8 9.0 77 51-128 13-89 (95)
8 1ugo_A BCL2-associated athanog 99.7 1.8E-17 6.3E-22 136.6 7.7 75 146-226 16-92 (99)
9 1wxv_A BAG-family molecular ch 99.7 3.3E-17 1.1E-21 130.5 8.5 78 52-129 4-87 (92)
10 1j8c_A Ubiquitin-like protein 99.7 4.2E-17 1.4E-21 138.5 8.9 97 21-126 7-103 (125)
11 2bwf_A Ubiquitin-like protein 99.7 1E-16 3.4E-21 122.0 9.4 72 56-127 5-76 (77)
12 1i6z_A BAG-family molecular ch 99.7 6.8E-17 2.3E-21 139.4 9.2 109 117-230 1-119 (135)
13 2kd0_A LRR repeats and ubiquit 99.7 2.4E-16 8.2E-21 124.8 9.2 75 53-127 10-84 (85)
14 3phx_B Ubiquitin-like protein 99.7 3E-16 1E-20 120.8 8.6 72 54-125 3-75 (79)
15 3v6c_B Ubiquitin; structural g 99.6 4.6E-16 1.6E-20 123.6 9.0 76 50-125 12-88 (91)
16 2dzi_A Ubiquitin-like protein 99.6 5.2E-16 1.8E-20 119.1 8.3 75 52-126 4-79 (81)
17 3plu_A Ubiquitin-like modifier 99.6 5.4E-16 1.9E-20 126.7 8.4 73 52-124 18-91 (93)
18 3dbh_I NEDD8; cell cycle, acti 99.6 7.4E-16 2.5E-20 120.2 8.7 75 51-125 8-83 (88)
19 4eew_A Large proline-rich prot 99.6 6.8E-16 2.3E-20 121.3 8.3 72 53-125 15-87 (88)
20 1wh3_A 59 kDa 2'-5'-oligoadeny 99.6 1.2E-15 4.1E-20 119.2 9.5 76 51-126 3-79 (87)
21 2kk8_A Uncharacterized protein 99.6 6.8E-16 2.3E-20 122.2 8.0 74 54-127 9-84 (84)
22 2lxa_A Ubiquitin-like protein 99.6 3.6E-16 1.2E-20 125.5 6.3 74 55-128 1-79 (87)
23 4dwf_A HLA-B-associated transc 99.6 1.2E-15 4.2E-20 120.3 9.2 74 53-127 3-77 (90)
24 3m62_B UV excision repair prot 99.6 4.8E-16 1.6E-20 127.9 7.1 73 55-127 1-74 (106)
25 2wyq_A HHR23A, UV excision rep 99.6 1.3E-15 4.6E-20 118.3 9.2 74 54-127 4-81 (85)
26 3shq_A UBLCP1; phosphatase, hy 99.6 8.3E-16 2.8E-20 149.2 8.7 77 52-128 2-81 (320)
27 4a20_A Ubiquitin-like protein 99.6 1.5E-15 5E-20 124.5 8.6 77 51-127 15-96 (98)
28 1wju_A NEDD8 ultimate buster-1 99.6 1.3E-15 4.6E-20 125.7 8.2 78 54-131 16-96 (100)
29 1ndd_A NEDD8, protein (ubiquit 99.6 1.7E-15 5.8E-20 114.2 7.8 70 56-125 1-71 (76)
30 3mtn_B UBA80, ubcep1, ubiquiti 99.6 2.1E-15 7.3E-20 116.4 8.4 72 54-125 2-74 (85)
31 1uh6_A Ubiquitin-like 5; beta- 99.6 1.3E-15 4.5E-20 125.8 7.5 74 51-124 24-98 (100)
32 1wx8_A Riken cDNA 4931431F19; 99.6 1.3E-15 4.6E-20 121.8 7.2 75 52-126 14-88 (96)
33 2hj8_A Interferon-induced 17 k 99.6 2.4E-15 8.2E-20 119.1 8.5 73 54-126 3-76 (88)
34 2kan_A Uncharacterized protein 99.6 2.3E-15 7.7E-20 121.5 8.5 76 51-126 11-87 (94)
35 2klc_A Ubiquilin-1; ubiquitin- 99.6 2.6E-15 9E-20 122.4 8.9 75 54-128 24-98 (101)
36 4fbj_B NEDD8; effector-HOST ta 99.6 1.6E-15 5.4E-20 120.3 7.3 70 56-125 1-71 (88)
37 1yqb_A Ubiquilin 3; structural 99.6 3.4E-15 1.2E-19 121.7 9.2 77 51-127 18-94 (100)
38 2faz_A Ubiquitin-like containi 99.6 3.7E-15 1.3E-19 114.2 8.8 72 55-126 2-76 (78)
39 4hcn_B Polyubiquitin, ubiquiti 99.6 1.5E-15 5.2E-20 122.6 6.9 75 51-125 18-93 (98)
40 2l7r_A Ubiquitin-like protein 99.6 1.6E-15 5.6E-20 121.6 7.0 75 51-126 15-89 (93)
41 2dzm_A FAS-associated factor 1 99.6 2.2E-15 7.5E-20 124.1 7.8 75 51-125 5-80 (100)
42 3n3k_B Ubiquitin; hydrolase, p 99.6 1.7E-15 5.8E-20 117.2 6.8 72 54-125 2-74 (85)
43 3m63_B Ubiquitin domain-contai 99.6 4.1E-16 1.4E-20 127.5 3.3 72 55-126 28-99 (101)
44 1x1m_A Ubiquitin-like protein 99.6 2.9E-15 9.9E-20 123.2 8.4 80 49-128 6-101 (107)
45 3a9j_A Ubiquitin; protein comp 99.6 3.2E-15 1.1E-19 112.7 7.9 71 56-126 1-72 (76)
46 1ttn_A DC-UBP, dendritic cell- 99.6 4.9E-15 1.7E-19 121.5 9.6 74 53-126 21-95 (106)
47 1wy8_A NP95-like ring finger p 99.6 6.2E-15 2.1E-19 115.8 9.6 74 53-126 5-81 (89)
48 1uel_A HHR23B, UV excision rep 99.6 4.6E-15 1.6E-19 119.1 8.8 71 56-126 1-75 (95)
49 1v5o_A 1700011N24RIK protein; 99.6 4.2E-15 1.4E-19 121.1 8.5 73 54-126 6-84 (102)
50 1wgd_A Homocysteine-responsive 99.6 3E-15 1E-19 119.5 7.1 74 53-126 5-85 (93)
51 1wx7_A Ubiquilin 3; ubiquitin- 99.6 7E-15 2.4E-19 120.3 8.9 74 53-126 15-88 (106)
52 3k9o_B Ubiquitin, UBB+1; E2-25 99.6 5.8E-15 2E-19 117.5 8.0 71 56-126 2-73 (96)
53 1t7s_A BAG-1 cochaperone; stru 99.5 2E-14 6.8E-19 124.1 9.4 107 119-230 1-124 (137)
54 1yx5_B Ubiquitin; proteasome, 99.5 1.7E-14 5.8E-19 115.9 8.4 71 56-126 1-72 (98)
55 1sif_A Ubiquitin; hydrophobic 99.5 1.4E-14 4.9E-19 114.7 7.8 71 56-126 10-81 (88)
56 4b6w_A Tubulin-specific chaper 99.5 3.7E-14 1.3E-18 113.3 9.6 72 55-126 2-83 (86)
57 2uyz_B Small ubiquitin-related 99.5 2.4E-14 8.4E-19 110.0 7.3 73 54-126 2-75 (79)
58 2ojr_A Ubiquitin; lanthide-bin 99.5 3.1E-14 1.1E-18 117.6 8.3 76 51-126 31-107 (111)
59 1wia_A Hypothetical ubiquitin- 99.5 5.9E-14 2E-18 112.2 9.6 72 52-126 4-77 (95)
60 1we6_A Splicing factor, putati 99.5 2.8E-14 9.4E-19 117.8 7.8 72 54-125 26-102 (111)
61 1hx1_B BAG-1, BAG-family molec 99.5 1.4E-13 4.8E-18 115.5 12.0 98 129-231 3-110 (114)
62 1v6e_A Cytoskeleton-associated 99.5 3.3E-14 1.1E-18 114.4 7.9 74 52-125 4-86 (95)
63 3b1l_X E3 ubiquitin-protein li 99.3 1.5E-15 5.1E-20 115.7 0.0 71 56-126 1-72 (76)
64 2daf_A FLJ35834 protein; hypot 99.5 3E-14 1E-18 120.9 7.8 78 51-128 11-90 (118)
65 3vdz_A Ubiquitin-40S ribosomal 99.5 3.5E-14 1.2E-18 117.6 8.0 73 54-126 34-107 (111)
66 2fnj_B Transcription elongatio 99.5 2.9E-14 1E-18 120.9 7.5 72 55-126 2-80 (118)
67 4ajy_B Transcription elongatio 99.5 3.7E-14 1.3E-18 120.4 7.5 72 55-126 2-80 (118)
68 3u30_A Ubiquitin, linear DI-ub 99.5 5.3E-14 1.8E-18 123.5 8.6 76 51-126 16-92 (172)
69 1wyw_B Ubiquitin-like protein 99.5 5.5E-14 1.9E-18 113.6 7.8 74 52-125 18-92 (97)
70 2kjr_A CG11242; UBL, ubiquitin 99.5 7.7E-14 2.6E-18 113.5 8.7 75 51-125 11-94 (95)
71 1we7_A SF3A1 protein; structur 99.5 8.5E-14 2.9E-18 115.6 8.5 62 64-125 45-106 (115)
72 1v2y_A 3300001G02RIK protein; 99.5 3E-14 1E-18 118.4 5.1 75 52-126 4-95 (105)
73 2kdb_A Homocysteine-responsive 99.5 4.9E-14 1.7E-18 115.5 6.1 73 52-124 20-99 (99)
74 2kj6_A Tubulin folding cofacto 99.4 1.6E-13 5.4E-18 112.2 8.0 74 53-126 12-95 (97)
75 2kdi_A Ubiquitin, vacuolar pro 99.4 1.5E-13 5.3E-18 114.5 8.1 73 54-126 8-81 (114)
76 3rt3_B Ubiquitin-like protein 99.4 2.1E-13 7E-18 117.7 8.9 74 53-126 79-153 (159)
77 3rt3_B Ubiquitin-like protein 99.4 2.5E-13 8.5E-18 117.2 8.0 71 56-126 3-76 (159)
78 1wgh_A Ubiquitin-like 3, HCG-1 99.4 3.2E-13 1.1E-17 114.1 8.4 79 51-129 12-101 (116)
79 3l0w_B Monoubiquitinated proli 99.4 3.3E-13 1.1E-17 119.8 8.3 71 56-126 1-72 (169)
80 3b08_A Polyubiquitin-C, ubiqui 99.4 4E-13 1.4E-17 113.7 8.3 72 56-127 1-73 (152)
81 3b08_A Polyubiquitin-C, ubiqui 99.4 1E-12 3.4E-17 111.2 10.7 72 55-126 76-148 (152)
82 2gow_A HCG-1 protein, ubiquiti 99.4 5.4E-13 1.8E-17 113.9 8.9 77 52-128 14-101 (125)
83 3u5e_m 60S ribosomal protein L 99.4 2.2E-14 7.5E-19 121.4 0.0 70 56-125 1-71 (128)
84 1t0y_A Tubulin folding cofacto 99.4 4.3E-13 1.5E-17 113.0 7.6 73 53-125 4-85 (122)
85 4dbg_A Ranbp-type and C3HC4-ty 99.4 8.7E-13 3E-17 109.8 8.7 72 55-126 24-99 (105)
86 3q3f_A Ribonuclease/ubiquitin 99.4 6.6E-13 2.3E-17 120.6 7.8 72 55-126 105-177 (189)
87 3u30_A Ubiquitin, linear DI-ub 99.4 1.7E-12 5.9E-17 113.8 9.2 71 55-125 96-167 (172)
88 1wf9_A NPL4 family protein; be 99.3 4.1E-12 1.4E-16 104.6 8.4 72 56-127 8-95 (107)
89 3u5c_f 40S ribosomal protein S 99.3 1.7E-13 5.9E-18 120.4 0.0 71 56-126 1-72 (152)
90 2dzj_A Synaptic glycoprotein S 99.3 4.6E-12 1.6E-16 101.4 8.3 71 53-123 8-85 (88)
91 1oqy_A HHR23A, UV excision rep 99.3 1.9E-12 6.5E-17 128.0 7.1 72 53-124 5-80 (368)
92 1se9_A Ubiquitin family; ubiqu 99.3 4.1E-12 1.4E-16 108.9 7.9 74 53-126 14-102 (126)
93 2kzr_A Ubiquitin thioesterase 99.3 3.5E-12 1.2E-16 100.7 6.4 72 56-127 1-78 (86)
94 3ai5_A Yeast enhanced green fl 99.3 6.5E-12 2.2E-16 121.7 8.9 73 53-125 231-304 (307)
95 1wjn_A Tubulin-folding protein 99.1 2.4E-10 8.2E-15 92.0 10.2 76 51-126 5-92 (97)
96 2io1_B Small ubiquitin-related 99.0 1E-09 3.4E-14 89.0 7.7 74 52-125 4-78 (94)
97 3a4r_A Nfatc2-interacting prot 99.0 2E-09 6.8E-14 84.3 8.8 75 51-125 3-79 (79)
98 2xzm_9 RPS31E; ribosome, trans 98.9 1.1E-10 3.6E-15 106.3 0.0 64 57-125 2-66 (189)
99 2io0_B Small ubiquitin-related 98.9 3.4E-09 1.2E-13 85.5 7.6 74 52-125 2-76 (91)
100 1wm3_A Ubiquitin-like protein 98.9 3.5E-09 1.2E-13 81.2 7.3 69 56-124 2-71 (72)
101 2d07_B Ubiquitin-like protein 98.8 1.2E-08 4.1E-13 82.3 7.8 74 52-125 14-88 (93)
102 1wz0_A Ubiquitin-like protein 98.8 1.5E-08 5E-13 83.8 8.1 74 52-125 21-95 (104)
103 2eke_C Ubiquitin-like protein 98.8 2E-08 6.9E-13 83.5 8.7 74 52-125 28-101 (106)
104 2k8h_A Small ubiquitin protein 98.7 2.7E-08 9.3E-13 83.1 8.3 75 52-126 23-98 (110)
105 2pjh_A Protein NPL4, nuclear p 98.4 1.8E-07 6.1E-12 73.6 4.2 69 56-124 5-78 (80)
106 3kyd_D Small ubiquitin-related 98.3 1.2E-06 4.2E-11 73.9 7.9 91 35-125 18-111 (115)
107 3pge_A SUMO-modified prolifera 98.3 1.4E-06 5E-11 79.7 7.4 74 52-125 26-99 (200)
108 3tix_A Ubiquitin-like protein 98.2 2.2E-06 7.5E-11 78.5 6.9 73 53-125 55-127 (207)
109 4efo_A Serine/threonine-protei 98.2 3.6E-06 1.2E-10 68.8 6.9 70 56-125 15-87 (94)
110 2d9d_A BAG family molecular ch 97.9 2.3E-05 7.9E-10 62.6 6.8 69 149-225 11-81 (89)
111 3v7o_A Minor nucleoprotein VP3 97.7 4.5E-06 1.5E-10 77.4 0.0 74 52-125 18-91 (227)
112 2jxx_A Nfatc2-interacting prot 97.7 0.00014 4.7E-09 59.5 8.7 74 52-125 22-97 (97)
113 2bps_A YUKD protein; ubiquitin 97.6 0.00011 3.9E-09 58.3 6.0 70 55-124 4-81 (81)
114 3uf8_A Ubiquitin-like protein 97.5 0.00022 7.6E-09 64.9 7.4 75 52-126 18-92 (209)
115 2l76_A Nfatc2-interacting prot 97.4 0.00052 1.8E-08 56.1 8.5 74 53-126 19-92 (95)
116 3goe_A DNA repair protein RAD6 97.4 0.00058 2E-08 54.3 8.1 72 54-125 8-81 (82)
117 3ix6_A TS, tsase, thymidylate 97.4 2.7E-05 9.1E-10 77.0 0.0 75 52-126 18-92 (360)
118 4da1_A Protein phosphatase 1K, 97.2 5.8E-05 2E-09 74.0 0.0 73 53-125 28-100 (389)
119 2al3_A TUG long isoform; TUG U 97.1 0.00087 3E-08 54.3 6.3 73 57-129 11-84 (90)
120 2kc2_A Talin-1, F1; FERM, adhe 96.8 0.0018 6.1E-08 55.5 5.8 68 58-125 14-121 (128)
121 3qx1_A FAS-associated factor 1 96.8 0.0056 1.9E-07 47.7 8.1 73 52-125 4-82 (84)
122 1wj4_A KIAA0794 protein; UBX d 96.6 0.011 3.7E-07 49.9 9.3 96 24-125 17-118 (124)
123 2dzk_A UBX domain-containing p 95.3 0.088 3E-06 43.2 8.9 73 53-125 11-89 (109)
124 2daj_A KIAA0977 protein, COBL- 94.8 0.079 2.7E-06 42.7 7.0 74 49-125 4-81 (91)
125 1oey_A P67-PHOX, neutrophil cy 94.0 0.088 3E-06 41.9 5.6 49 53-102 3-51 (83)
126 4a3p_A Ubiquitin carboxyl-term 93.8 0.24 8E-06 45.0 8.8 69 56-124 128-206 (217)
127 1vd2_A Protein kinase C, IOTA 93.2 0.22 7.5E-06 40.0 6.7 50 52-101 3-53 (89)
128 3ivf_A Talin-1; FERM domain, c 92.9 0.41 1.4E-05 46.1 9.4 70 55-124 3-82 (371)
129 2cr5_A Reproduction 8; UBX dom 92.8 0.41 1.4E-05 39.0 7.9 72 53-125 21-97 (109)
130 3jyu_A Ubiquitin carboxyl-term 92.5 0.43 1.5E-05 43.7 8.6 70 56-125 140-219 (231)
131 1ip9_A BEM1 protein; ubiquitin 91.6 0.47 1.6E-05 38.0 6.6 69 54-125 11-84 (85)
132 1ryj_A Unknown; beta/alpha pro 91.3 1.4 4.8E-05 32.9 8.8 61 56-125 5-65 (70)
133 1s3s_G P47 protein; AAA ATPase 91.1 0.38 1.3E-05 40.4 6.1 68 54-121 51-123 (127)
134 2l32_A Small archaeal modifier 90.3 0.65 2.2E-05 35.5 6.2 59 57-125 2-61 (74)
135 4eut_A Serine/threonine-protei 87.4 1.4 4.6E-05 41.9 7.6 71 56-126 313-386 (396)
136 1vjk_A Molybdopterin convertin 85.8 4.3 0.00015 31.9 8.6 66 55-125 9-93 (98)
137 3po0_A Small archaeal modifier 80.6 6.7 0.00023 29.9 7.6 58 63-125 16-84 (89)
138 1q1o_A Cell division control p 79.3 2.2 7.5E-05 34.9 4.5 48 54-101 4-64 (98)
139 4e71_A Plexin-B2, MM1; transme 78.9 7.3 0.00025 32.4 7.6 73 53-125 9-109 (111)
140 2kvr_A Ubiquitin carboxyl-term 77.3 1.6 5.3E-05 37.0 3.2 32 68-99 59-90 (130)
141 2hj1_A Hypothetical protein; s 75.4 10 0.00035 30.5 7.4 69 52-125 9-84 (97)
142 2r2o_A Plexin-B1; effector dom 75.1 11 0.00038 32.5 8.0 75 52-126 21-128 (138)
143 1tyg_B YJBS; alpha beta barrel 74.4 6.3 0.00022 31.1 5.9 61 58-125 21-82 (87)
144 1wgk_A Riken cDNA 2900073H19 p 73.8 6.7 0.00023 32.3 6.1 70 54-125 10-103 (114)
145 1fm0_D Molybdopterin convertin 73.1 7.5 0.00026 28.9 5.8 54 66-125 18-76 (81)
146 3qa8_A MGC80376 protein; kinas 72.6 2.3 7.8E-05 44.9 3.7 57 57-113 314-371 (676)
147 3rpf_C Molybdopterin convertin 72.2 12 0.00043 27.6 6.8 53 68-125 15-69 (74)
148 1wgy_A RAP guanine nucleotide 66.9 12 0.00042 30.7 6.1 76 51-126 5-86 (104)
149 1y8x_B Ubiquitin-activating en 65.7 2 6.8E-05 34.9 1.2 60 66-125 6-83 (98)
150 1ef1_A Moesin; membrane, FERM 64.9 22 0.00075 32.5 8.3 68 56-123 2-75 (294)
151 3onh_A Ubiquitin-activating en 63.5 10 0.00034 32.3 5.1 58 68-126 9-79 (127)
152 2qjl_A URM1, ubiquitin-related 62.2 41 0.0014 26.2 8.3 59 64-125 19-94 (99)
153 2eel_A Cell death activator CI 62.1 22 0.00076 28.5 6.7 50 75-126 28-79 (91)
154 4e74_A Plexin-A4; RBD, structu 60.8 25 0.00084 29.4 7.0 74 53-126 11-114 (117)
155 2bkf_A Zinc-finger protein NBR 60.6 23 0.0008 28.2 6.5 47 52-100 3-51 (87)
156 2cu1_A Mitogen-activated prote 60.5 13 0.00044 30.6 5.1 46 54-102 7-52 (103)
157 3h6n_A Plexin-D1; structural g 59.8 34 0.0012 29.0 7.8 72 55-126 4-104 (127)
158 3mud_A DNA repair protein XRCC 59.8 29 0.00098 31.0 7.6 98 76-198 69-174 (175)
159 1wj6_A KIAA0049 protein, RSGI 57.4 46 0.0016 27.3 7.8 41 51-91 10-52 (101)
160 2cu3_A Unknown function protei 57.2 19 0.00065 26.0 5.1 57 61-125 3-59 (64)
161 1f0z_A THis protein; ubiquitin 56.3 17 0.00057 26.4 4.7 58 61-125 4-61 (66)
162 2l52_A Methanosarcina acetivor 55.8 31 0.0011 27.0 6.6 67 55-125 3-94 (99)
163 1h4r_A Merlin; FERM, neurofibr 55.4 34 0.0012 31.7 7.8 70 53-122 20-94 (314)
164 1vcs_A Vesicle transport throu 54.0 19 0.00067 28.8 5.2 44 179-227 11-54 (102)
165 2kl0_A Putative thiamin biosyn 53.3 28 0.00094 26.2 5.6 57 61-125 4-60 (73)
166 3ivf_A Talin-1; FERM domain, c 53.2 63 0.0022 30.6 9.5 71 54-124 84-165 (371)
167 1wmh_B Partitioning defective- 53.1 32 0.0011 27.3 6.1 49 53-101 4-54 (86)
168 3kuz_A Plexin-C1; structural g 52.7 52 0.0018 27.9 7.7 74 52-125 16-125 (126)
169 1rws_A Hypothetical protein PF 51.6 4.4 0.00015 30.6 0.9 47 69-124 25-71 (77)
170 2q5w_D Molybdopterin convertin 51.5 9.7 0.00033 28.0 2.8 55 65-125 16-72 (77)
171 3onj_A T-snare VTI1; helix, HA 50.8 23 0.0008 28.1 5.1 44 179-227 7-50 (97)
172 2juo_A GA-binding protein alph 50.4 27 0.00092 27.9 5.2 57 68-124 6-62 (89)
173 1f2r_I Inhibitor of caspase-ac 50.2 1E+02 0.0035 25.1 8.8 56 68-126 31-90 (100)
174 1wgr_A Growth factor receptor- 50.1 53 0.0018 26.6 7.1 75 52-126 6-92 (100)
175 2ylm_A Ubiquitin carboxyl-term 50.1 9.5 0.00033 39.0 3.3 31 68-98 39-69 (530)
176 3dwg_C 9.5 kDa culture filtrat 48.6 30 0.001 26.4 5.3 56 68-125 20-88 (93)
177 2k5p_A THis protein, thiamine- 48.1 15 0.00051 28.1 3.4 58 60-124 3-63 (78)
178 3hm6_X Plexin-B1; structural g 47.8 52 0.0018 34.8 8.4 75 52-126 254-361 (644)
179 2dhz_A RAP guanine nucleotide 47.7 32 0.0011 28.9 5.6 72 52-125 6-91 (120)
180 2i1j_A Moesin; FERM, coiled-co 46.7 45 0.0015 34.4 7.7 70 54-123 3-78 (575)
181 2qyw_A Vesicle transport throu 43.5 50 0.0017 26.4 6.1 45 179-227 21-65 (102)
182 2jrh_A Mitogen-activated prote 42.0 64 0.0022 26.0 6.2 46 55-103 4-49 (94)
183 2ylm_A Ubiquitin carboxyl-term 41.5 60 0.0021 33.0 7.7 60 65-124 352-419 (530)
184 2g1e_A Hypothetical protein TA 41.4 58 0.002 24.3 5.9 57 68-125 18-85 (90)
185 4e61_A Protein BIM1; EB1-like 41.4 54 0.0018 27.0 5.9 40 183-222 48-98 (106)
186 2k9x_A Tburm1, uncharacterized 40.3 14 0.00049 30.2 2.3 59 65-125 21-97 (110)
187 3r8s_T 50S ribosomal protein L 38.2 75 0.0026 25.3 6.2 57 65-124 28-85 (93)
188 1ibx_B Chimera of IGG binding 37.8 31 0.0011 30.0 4.1 50 75-126 82-135 (145)
189 1pqs_A Cell division control p 37.5 23 0.00079 27.3 3.0 36 66-101 3-43 (77)
190 3ig3_A Plxna3 protein; plexin 37.4 1.1E+02 0.0037 32.3 8.8 75 52-126 230-334 (627)
191 2kmc_A Fermitin family homolog 36.4 1.5E+02 0.005 24.3 7.7 61 65-125 33-98 (102)
192 1j0g_A Hypothetical protein 18 35.5 1.7E+02 0.0057 23.3 7.9 72 54-125 9-85 (92)
193 2npt_B Mitogen-activated prote 33.5 67 0.0023 26.2 5.1 47 54-103 19-65 (100)
194 2c60_A Human mitogen-activated 32.4 76 0.0026 26.2 5.4 47 54-103 30-76 (111)
195 1d4b_A CIDE B, human cell deat 30.1 19 0.00066 30.4 1.5 48 76-126 55-104 (122)
196 3u52_E Phenol hydroxylase comp 28.9 95 0.0032 26.1 5.5 71 54-124 22-107 (119)
197 3zsu_A TLL2057 protein, cyanoq 27.5 2.1E+02 0.0073 24.2 7.6 47 175-221 75-124 (130)
198 3qij_A Protein 4.1; cytoskelet 26.4 1.1E+02 0.0038 28.2 6.3 73 52-124 14-93 (296)
199 2ns5_A Partitioning-defective 26.0 2.4E+02 0.0082 22.2 8.4 69 55-124 2-80 (85)
200 3ls0_A SLL1638 protein, PSBQ; 24.6 2.7E+02 0.0094 23.6 7.8 44 178-221 81-127 (133)
201 3tve_T 50S ribosomal protein L 24.0 80 0.0027 25.1 4.1 55 65-122 22-77 (92)
202 2zjr_Q 50S ribosomal protein L 23.7 1.2E+02 0.0043 24.1 5.2 55 67-124 25-80 (95)
203 3m91_B Prokaryotic ubiquitin-l 21.5 1.2E+02 0.004 21.3 3.9 33 205-237 5-37 (44)
204 2zjd_A Microtubule-associated 21.0 1.5E+02 0.0052 24.9 5.4 54 69-122 57-116 (130)
No 1
>1m62_A BAG-family molecular chaperone regulator-4; BAG domain, SODD, silencer of death domains, HSP70/HSC70 CO-chaperone; NMR {Homo sapiens} SCOP: a.7.7.1
Probab=99.76 E-value=1.3e-18 Score=140.48 Aligned_cols=74 Identities=31% Similarity=0.432 Sum_probs=68.8
Q ss_pred hhhhHHHHHHHHHHhhhhHHHHHHHHHhCCCcchhhHhhHHHHHHHHHHhccCCCCChh--hHHHHHHHHHHHHHHHHHH
Q 018493 146 ASKSISEISLEVDRLAGQVSALESIITKGGKVAEKDVLNLIELLMNQLLKLDGIMADGD--VKLQRKMQVRRVQKYVETL 223 (355)
Q Consensus 146 a~~aIs~V~~eVDkLa~ev~~LE~~I~~g~Kv~eke~~~LsE~LMq~LLKLD~IeaeGd--aR~qRK~~VkrVQ~~Le~L 223 (355)
++.+|..|..+|++|+.+|..|+ +++.+++|.+|+|+||++|||||+|+++|+ +|++||.+|++||++|+.|
T Consensus 9 a~~~I~~I~~ev~~L~~~V~~f~------g~~~dkey~~L~E~L~k~LLkLD~Ie~eG~~~~R~~RK~~Vk~iQ~~l~~L 82 (87)
T 1m62_A 9 SIKKIIHVLEKVQYLEQEVEEFV------GKKTDKAYWLLEEMLTKELLELDSVETGGQDSVRQARKEAVCKIQAILEKL 82 (87)
T ss_dssp THHHHHHHHHHHHHHHHHHHHCC------CCTTSHHHHHHHHHHHHHHHHHTTCCCSSCHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHh------CCcchHHHHHHHHHHHHHHHHHCCcCcCCcHHHHHHHHHHHHHHHHHHHHH
Confidence 56789999999999999998885 457899999999999999999999999995 9999999999999999999
Q ss_pred HH
Q 018493 224 DM 225 (355)
Q Consensus 224 D~ 225 (355)
|.
T Consensus 83 D~ 84 (87)
T 1m62_A 83 EK 84 (87)
T ss_dssp HH
T ss_pred Hh
Confidence 97
No 2
>1wgg_A Ubiquitin carboxyl-terminal hydrolase 14; ubiquitin specific protease 14, USP14, ubiquitin-like fold, structural genomics; NMR {Mus musculus} SCOP: d.15.1.1
Probab=99.74 E-value=3e-18 Score=139.01 Aligned_cols=76 Identities=17% Similarity=0.192 Sum_probs=72.0
Q ss_pred CCCeeEEEEEeCCEEE-EEEEcCCCCHHHHHHHHhcccCCCccCcEEeccCcccCCchhhhhcCCCCCCEEEEeecCC
Q 018493 52 PPPTIRVRVKYGSIYH-EIHINSQATFGELKKLLTGPTGLHHEDQKLIYKDKERDSKAFLDVVGVKDKSKLVLVEDPI 128 (355)
Q Consensus 52 ~~~~I~V~VK~gg~~~-~V~V~~~sTVgdLK~~I~e~TGVppe~QKLIykGK~ldD~~tLs~~GIKdgSkImLv~~p~ 128 (355)
...+|+|+|+|++..| .|+|++++||++||++|++.+|||+++|||+|+||.++|+ +|++|||++|++||||+.+.
T Consensus 4 ~~~~m~i~Vk~~g~~~~~l~v~~~~TV~~lK~~I~~~tgip~~~QkLi~~Gk~L~D~-tL~~~~I~~g~~i~l~~~~~ 80 (96)
T 1wgg_A 4 GSSGYSVTVKWGKEKFEGVELNTDEPPMVFKAQLFALTGVQPARQKVMVKGGTLKDD-DWGNIKMKNGMTVLMMGSAD 80 (96)
T ss_dssp CCCEEEEEEEETTEEEEEEEEESSSCHHHHHHHHHHHTCCCTTTSCCEETTEECCSS-CCCSCCCCSSCEEECCCCCC
T ss_pred CCcEEEEEEEECCEEEEEEEECCCCcHHHHHHHHHHHHCcCHHHeEEEECCcCCCCC-CHHHCCCCCCCEEEEEecch
Confidence 4568999999999999 6999999999999999999999999999999999999998 99999999999999998765
No 3
>1uk5_A BAG-family molecular chaperone regulator-3; triple helix bandle, CAIR-1, BIS, riken structural genomics/proteomics initiative, RSGI; NMR {Mus musculus} SCOP: a.7.7.1
Probab=99.74 E-value=3.7e-18 Score=143.26 Aligned_cols=78 Identities=29% Similarity=0.414 Sum_probs=69.2
Q ss_pred hhhhHHHHHHHHHHhhhhHHHHHHHHHhCCCcchhhHhhHHHHHHHHHHhccCCCCChh--hHHHHHHHHHHHHHHHHHH
Q 018493 146 ASKSISEISLEVDRLAGQVSALESIITKGGKVAEKDVLNLIELLMNQLLKLDGIMADGD--VKLQRKMQVRRVQKYVETL 223 (355)
Q Consensus 146 a~~aIs~V~~eVDkLa~ev~~LE~~I~~g~Kv~eke~~~LsE~LMq~LLKLD~IeaeGd--aR~qRK~~VkrVQ~~Le~L 223 (355)
++.+|..|..+|++|..+|..| .+ +..|++|.+|+|+||++|||||+|+++|+ +|++||.+||+||++|+.|
T Consensus 28 ~~~~I~~I~~eV~~L~~qV~~f-----~g-~k~dkey~~L~E~L~k~LLkLD~IeteG~~~vR~aRK~aVk~iQ~~l~~L 101 (111)
T 1uk5_A 28 GVLKVEAILEKVQGLEQAVDSF-----EG-KKTDKKYLMIEEYLTKELLALDSVDPEGRADVRQARRDGVRKVQTILEKL 101 (111)
T ss_dssp HHHHHHHHHHHHHHHHHHHHTC-----CS-CSSSHHHHHHHHHHHHHHHHHHSCCCSSCHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHH-----cC-CcchHHHHHHHHHHHHHHHHHCCcCcCCcHHHHHHHHHHHHHHHHHHHHH
Confidence 4678999999999998888877 34 44799999999999999999999999995 9999999999999999999
Q ss_pred HHhhhh
Q 018493 224 DMLKIK 229 (355)
Q Consensus 224 D~lk~~ 229 (355)
|....-
T Consensus 102 D~k~~~ 107 (111)
T 1uk5_A 102 EQKASG 107 (111)
T ss_dssp HHHHHC
T ss_pred HhcccC
Confidence 985543
No 4
>1m7k_A Silencer of death domains; three helix bundle, chaperone; NMR {Homo sapiens} SCOP: a.7.7.1
Probab=99.74 E-value=4e-18 Score=140.59 Aligned_cols=75 Identities=31% Similarity=0.426 Sum_probs=69.1
Q ss_pred hhhhhHHHHHHHHHHhhhhHHHHHHHHHhCCCcchhhHhhHHHHHHHHHHhccCCCCChh--hHHHHHHHHHHHHHHHHH
Q 018493 145 KASKSISEISLEVDRLAGQVSALESIITKGGKVAEKDVLNLIELLMNQLLKLDGIMADGD--VKLQRKMQVRRVQKYVET 222 (355)
Q Consensus 145 ka~~aIs~V~~eVDkLa~ev~~LE~~I~~g~Kv~eke~~~LsE~LMq~LLKLD~IeaeGd--aR~qRK~~VkrVQ~~Le~ 222 (355)
.++.+|..|..+|++|+.+|..|+ |.| .+++|.+|+|+||++|||||+|+++|+ +|++||.+|++||++|+.
T Consensus 21 ~~~~kI~~I~~ev~~L~~~V~~f~-----G~k-~dkey~~L~E~L~k~LLkLD~IeteG~~~vR~~RK~~Vk~iQ~~l~~ 94 (99)
T 1m7k_A 21 PSIKKIIHVLEKVQYLEQEVEEFV-----GKK-TDKAYWLLEEMLTKELLELDSVETGGQDSVRQARKEAVCKIQAILEK 94 (99)
T ss_dssp CSHHHHHHHHHHHHHHHHHHHHCC-----SCT-TSHHHHHHHHHHHHHHHHHTTCCCSSCHHHHHHHHHHHHHHHHHHHH
T ss_pred cHHHHHHHHHHHHHHHHHHHHHHh-----CCc-hHHHHHHHHHHHHHHHHHHCCcCcCCcHHHHHHHHHHHHHHHHHHHH
Confidence 467889999999999999998886 444 799999999999999999999999995 999999999999999999
Q ss_pred HHH
Q 018493 223 LDM 225 (355)
Q Consensus 223 LD~ 225 (355)
||.
T Consensus 95 LD~ 97 (99)
T 1m7k_A 95 LEK 97 (99)
T ss_dssp HHH
T ss_pred Hhc
Confidence 997
No 5
>1v5t_A 8430435I17RIK protein; hypothetical protein, ubiquitin-like fold, structural genomics, riken structural genomics/proteomics initiative, RSGI; NMR {Mus musculus} SCOP: d.15.1.1 PDB: 2kx3_A
Probab=99.73 E-value=4.6e-18 Score=135.79 Aligned_cols=77 Identities=23% Similarity=0.346 Sum_probs=73.0
Q ss_pred CCCeeEEEEEeCCEEEEE-EEcCCCCHHHHHHHHhcccCCCccCcEEe---ccCcccCCchhhhhcCCCCCCEEEEeecC
Q 018493 52 PPPTIRVRVKYGSIYHEI-HINSQATFGELKKLLTGPTGLHHEDQKLI---YKDKERDSKAFLDVVGVKDKSKLVLVEDP 127 (355)
Q Consensus 52 ~~~~I~V~VK~gg~~~~V-~V~~~sTVgdLK~~I~e~TGVppe~QKLI---ykGK~ldD~~tLs~~GIKdgSkImLv~~p 127 (355)
...+|+|+|+|++..|.| +|++++||++||++|++.+|||+++|||+ |+|+.++|+.+|++|||++|++||||+.+
T Consensus 4 ~~~~m~i~Vk~~g~~~~i~~v~~~~TV~~lK~~I~~~~gip~~~QkLi~~k~~Gk~L~D~~~L~~~~i~~g~~l~l~~~~ 83 (90)
T 1v5t_A 4 GSSGLPIIVKWGGQEYSVTTLSEDDTVLDLKQFLKTLTGVLPERQKLLGLKVKGKPAENDVKLGALKLKPNTKIMMMGTR 83 (90)
T ss_dssp CCCSCCEEEEETTEEEEECSCCSSSBHHHHHHHHHHHTCCCTTTCEEESCEETTEECCTTSBHHHHTCCTTEEEEEECCC
T ss_pred CCceEEEEEEECCEEEEEEEeCCCCCHHHHHHHHHHHHCcCHHHeEEEeeccCCcCcCCCCCHHHcCCCCCCEEEEEecC
Confidence 456799999999999999 99999999999999999999999999999 99999999999999999999999999976
Q ss_pred C
Q 018493 128 I 128 (355)
Q Consensus 128 ~ 128 (355)
.
T Consensus 84 ~ 84 (90)
T 1v5t_A 84 E 84 (90)
T ss_dssp S
T ss_pred c
Confidence 5
No 6
>3a8y_C BAG family molecular chaperone regulator 5; BAG domain, HSP70, ATPase domain, protein complex, triple helix, structural genomics, NPPSFA; 2.30A {Homo sapiens}
Probab=99.71 E-value=1.6e-17 Score=144.37 Aligned_cols=82 Identities=28% Similarity=0.401 Sum_probs=73.6
Q ss_pred hhhhHHHHHHHHHHhhhhHHHHHHHHHhCCCcchhhHhhHHHHHHHHHHhccCCCCChh--hHHHHHHHHHHHHHHHHHH
Q 018493 146 ASKSISEISLEVDRLAGQVSALESIITKGGKVAEKDVLNLIELLMNQLLKLDGIMADGD--VKLQRKMQVRRVQKYVETL 223 (355)
Q Consensus 146 a~~aIs~V~~eVDkLa~ev~~LE~~I~~g~Kv~eke~~~LsE~LMq~LLKLD~IeaeGd--aR~qRK~~VkrVQ~~Le~L 223 (355)
++.+|..|..+||+|+.+|..| .+++.+++|.+|+|+||++|||||+|+++|+ +|.+||.+||+||++|+.|
T Consensus 32 ~~~aI~~V~~eVd~L~~eV~~F------~G~~~dkey~~L~E~L~k~LLKLD~IdteGd~~vR~aRK~aVk~VQ~~Le~L 105 (142)
T 3a8y_C 32 SHKAVWNVLGNLSEIQGEVLSF------DGNRTDKNYIRLEELLTKQLLALDAVDPQGEEKCKAARKQAVRLAQNILSYL 105 (142)
T ss_dssp HHHHHHHHHHHHHHHHHHHHTC------CSCTTSHHHHHHHHHHHHHHHHHHTCCCTTCHHHHHHHHHHHHHHHHHHHHH
T ss_pred chHHHHHHHHHHHHHHHHHHHh------cCCchHHHHHHHHHHHHHHHHHHcCcCCCCCHHHHHHHHHHHHHHHHHHHHH
Confidence 5678999999999999999877 4457899999999999999999999999995 9999999999999999999
Q ss_pred HHhhhhcCCC
Q 018493 224 DMLKIKNSMP 233 (355)
Q Consensus 224 D~lk~~n~~~ 233 (355)
|..+..+.+.
T Consensus 106 D~k~~e~~~~ 115 (142)
T 3a8y_C 106 DLKSDEWEYC 115 (142)
T ss_dssp HHHHCBCCC-
T ss_pred HHhhHHHHHH
Confidence 9988766543
No 7
>1v86_A DNA segment, CHR 7, wayne state university 128, expressed; ubiquitin fold, structural genomics, D7WSU128E protein; HET: DNA; NMR {Mus musculus} SCOP: d.15.1.1
Probab=99.71 E-value=1.9e-17 Score=133.82 Aligned_cols=77 Identities=23% Similarity=0.356 Sum_probs=71.1
Q ss_pred CCCCeeEEEEEeCCEEEEEEEcCCCCHHHHHHHHhcccCCCccCcEEeccCcccCCchhhhhcCCCCCCEEEEeecCC
Q 018493 51 APPPTIRVRVKYGSIYHEIHINSQATFGELKKLLTGPTGLHHEDQKLIYKDKERDSKAFLDVVGVKDKSKLVLVEDPI 128 (355)
Q Consensus 51 ~~~~~I~V~VK~gg~~~~V~V~~~sTVgdLK~~I~e~TGVppe~QKLIykGK~ldD~~tLs~~GIKdgSkImLv~~p~ 128 (355)
....+|+|+|+|++..|.|+|++++||.+||++|++.+|||+++|||+|+|+.++|. +|++|||++|++|||++.+.
T Consensus 13 ~~~~~~~i~Vk~~g~~~~i~v~~~~TV~~LK~~I~~~tgip~~~QrL~~~Gk~Ldd~-tL~~~~i~~g~~i~lv~~~~ 89 (95)
T 1v86_A 13 VGKELVDLKIIWNKTKHDVKVPLDSTGSELKQKIHSITGLPPAMQKVMYKGLVPEDK-TLREIKVTSGAKIMVVGSTI 89 (95)
T ss_dssp CCCCCEEEEEEETTEEEEEEECTTSBHHHHHHHHHHHHCSCSTTCCCBSSSBCCSSS-BHHHHCCCTTEEEEECCSSC
T ss_pred CCCceEEEEEEECCEEEEEEECCCCcHHHHHHHHHHHHCcCHHHeEEEECCeeCCcC-cHHHCCCCCCCEEEEEeccc
Confidence 345679999999999999999999999999999999999999999999999999655 99999999999999998654
No 8
>1ugo_A BCL2-associated athanogene 5; triple helix bundle, riken structural genomics/proteomics initiative, RSGI, structural genomics, chaperone; NMR {Mus musculus} SCOP: a.7.7.1
Probab=99.70 E-value=1.8e-17 Score=136.60 Aligned_cols=75 Identities=23% Similarity=0.395 Sum_probs=67.2
Q ss_pred hhhhHHHHHHHHHHhhhhHHHHHHHHHhCCCcchhhHhhHHHHHHHHHHhccCCCCChh--hHHHHHHHHHHHHHHHHHH
Q 018493 146 ASKSISEISLEVDRLAGQVSALESIITKGGKVAEKDVLNLIELLMNQLLKLDGIMADGD--VKLQRKMQVRRVQKYVETL 223 (355)
Q Consensus 146 a~~aIs~V~~eVDkLa~ev~~LE~~I~~g~Kv~eke~~~LsE~LMq~LLKLD~IeaeGd--aR~qRK~~VkrVQ~~Le~L 223 (355)
+..+|..|..+|++|+++|..| .+.| .+++|.+|+|+||++|||||+|+++|+ +|++||.+|++||++|+.|
T Consensus 16 pi~kI~~I~~ev~~L~~~V~~f-----~g~k-~dkey~~L~E~L~k~LLkLD~IeteG~~~iR~~RK~~Vk~iQ~~l~~L 89 (99)
T 1ugo_A 16 SISRLQEIQREVKAIEPQVVGF-----SGLS-DDKNYKRLERILTKQLFEIDSVDTEGKGDIQQARKRAAQETERLLKEL 89 (99)
T ss_dssp THHHHHHHHHHHHHSHHHHHTC-----CCCT-TSSHHHHHHHHHHHHHHHHHHSCCSSCHHHHHHHHHHHHHHHHHHHHH
T ss_pred cHHHHHHHHHHHHHHHHHHHHh-----cCCc-hhHHHHHHHHHHHHHHHHHcCcCcCCcHHHHHHHHHHHHHHHHHHHHH
Confidence 4567899999999999988887 3444 799999999999999999999999994 5999999999999999999
Q ss_pred HHh
Q 018493 224 DML 226 (355)
Q Consensus 224 D~l 226 (355)
|..
T Consensus 90 D~k 92 (99)
T 1ugo_A 90 EQN 92 (99)
T ss_dssp HHH
T ss_pred Hhc
Confidence 984
No 9
>1wxv_A BAG-family molecular chaperone regulator-1; structural genomics, apoptosis, riken structural genomics/proteomics initiative, RSGI, NPPSFA; NMR {Homo sapiens} SCOP: d.15.1.1
Probab=99.70 E-value=3.3e-17 Score=130.45 Aligned_cols=78 Identities=24% Similarity=0.405 Sum_probs=71.5
Q ss_pred CCCeeEEEEEeCCEEEEEEEcCC-----CCHHHHHHHHhcccCCCccCcEEeccCcccCC-chhhhhcCCCCCCEEEEee
Q 018493 52 PPPTIRVRVKYGSIYHEIHINSQ-----ATFGELKKLLTGPTGLHHEDQKLIYKDKERDS-KAFLDVVGVKDKSKLVLVE 125 (355)
Q Consensus 52 ~~~~I~V~VK~gg~~~~V~V~~~-----sTVgdLK~~I~e~TGVppe~QKLIykGK~ldD-~~tLs~~GIKdgSkImLv~ 125 (355)
...+|+|+|+|++..|.|+|+++ +||++||++|++.+|||+++|||+|+|+.|+| +.+|++|||++|++|+|++
T Consensus 4 ~~~~~~v~Vk~~~~~~~i~v~~~~~~~~~TV~~LK~~i~~~~gip~~~qrL~~~Gk~L~D~~~~L~~~~i~~g~~i~l~~ 83 (92)
T 1wxv_A 4 GSSGLTVTVTHSNEKHDLHVTSQQGSSEPVVQDLAQVVEEVIGVPQSFQKLIFKGKSLKEMETPLSALGIQDGCRVMLIG 83 (92)
T ss_dssp CCSSEEEEEECSSSEEEEEECCCSSSSSCBHHHHHHHHHHHTCCCTTTCEEEETTEEECCSSSBHHHHTCCSSEEEEEES
T ss_pred CCCeEEEEEEECCEEEEEEECCCcCcccCcHHHHHHHHHHHHCcCHHHEEEEECCeecCCCcccHHHCCCCCCCEEEEEe
Confidence 34689999999999999999996 99999999999999999999999999999877 6689999999999999998
Q ss_pred cCCc
Q 018493 126 DPIS 129 (355)
Q Consensus 126 ~p~s 129 (355)
.+.+
T Consensus 84 ~~~~ 87 (92)
T 1wxv_A 84 KKNS 87 (92)
T ss_dssp CCSC
T ss_pred cCCC
Confidence 6553
No 10
>1j8c_A Ubiquitin-like protein hplic-2; ubiquitin-like domain, structural genomics; NMR {Homo sapiens} SCOP: d.15.1.1
Probab=99.69 E-value=4.2e-17 Score=138.54 Aligned_cols=97 Identities=18% Similarity=0.179 Sum_probs=85.3
Q ss_pred CCccccccceeecCCceEEEeecCCCCCCCCCCCeeEEEEEeCCEEEEEEEcCCCCHHHHHHHHhcccCCCccCcEEecc
Q 018493 21 GSAEAAAHEWELRPGGMLVQKRNPDSDRTSAPPPTIRVRVKYGSIYHEIHINSQATFGELKKLLTGPTGLHHEDQKLIYK 100 (355)
Q Consensus 21 ~~~~~~~~~we~rpggmlvqkR~~~~~~~~~~~~~I~V~VK~gg~~~~V~V~~~sTVgdLK~~I~e~TGVppe~QKLIyk 100 (355)
|+....-..|+++|+|+.+.+- ...+|+|+|++.+..+.|+|++++||.+||++|++.+|||+++|||+|+
T Consensus 7 ~~~~~~~~~~~~~~~~s~~~~~---------~~~~m~I~Vk~~g~~~~l~v~~~~TV~~LK~~I~~~~gip~~~QrLi~~ 77 (125)
T 1j8c_A 7 SSGPPRPSRGPAAAQGSAAAPA---------EPKIIKVTVKTPKEKEEFAVPENSSVQQFKEAISKRFKSQTDQLVLIFA 77 (125)
T ss_dssp CCCCCSSCCCSCCCCCSSSCCC---------CCCCEEEEEECSSCEEEEEECTTCCHHHHHHHHHHHHCSCSSSEEEEET
T ss_pred CCCCCChhhCCcCCCCCCcccC---------CCCcEEEEEEeCCeEEEEEECCCCcHHHHHHHHHHHHCcCcceEEEEEC
Confidence 3334445689999999886652 2357999999877889999999999999999999999999999999999
Q ss_pred CcccCCchhhhhcCCCCCCEEEEeec
Q 018493 101 DKERDSKAFLDVVGVKDKSKLVLVED 126 (355)
Q Consensus 101 GK~ldD~~tLs~~GIKdgSkImLv~~ 126 (355)
|+.|+|+.+|.+|||++|++|+|+..
T Consensus 78 Gk~L~D~~tL~dygI~~gstI~lv~~ 103 (125)
T 1j8c_A 78 GKILKDQDTLIQHGIHDGLTVHLVIK 103 (125)
T ss_dssp TEEESTTSCGGGTTCSSSEEEEEEEC
T ss_pred CEEcCCCCCHHHcCCCCCCEEEEEec
Confidence 99999999999999999999999974
No 11
>2bwf_A Ubiquitin-like protein DSK2; signaling protein, UBA, signaling proteins; 1.15A {Saccharomyces cerevisiae} SCOP: d.15.1.1 PDB: 2bwe_S
Probab=99.68 E-value=1e-16 Score=122.04 Aligned_cols=72 Identities=19% Similarity=0.364 Sum_probs=68.9
Q ss_pred eEEEEEeCCEEEEEEEcCCCCHHHHHHHHhcccCCCccCcEEeccCcccCCchhhhhcCCCCCCEEEEeecC
Q 018493 56 IRVRVKYGSIYHEIHINSQATFGELKKLLTGPTGLHHEDQKLIYKDKERDSKAFLDVVGVKDKSKLVLVEDP 127 (355)
Q Consensus 56 I~V~VK~gg~~~~V~V~~~sTVgdLK~~I~e~TGVppe~QKLIykGK~ldD~~tLs~~GIKdgSkImLv~~p 127 (355)
|.|+|++++..+.++|++++||++||++|++.+|+|+++|+|+|+|+.++|+.+|++|||++|++|+|+..+
T Consensus 5 m~i~vk~~g~~~~~~v~~~~tV~~LK~~i~~~~~i~~~~qrL~~~gk~L~d~~tL~~~~i~~g~~i~l~~~~ 76 (77)
T 2bwf_A 5 LNIHIKSGQDKWEVNVAPESTVLQFKEAINKANGIPVANQRLIYSGKILKDDQTVESYHIQDGHSVHLVKSQ 76 (77)
T ss_dssp EEEEEEETTEEEEEEECTTCBHHHHHHHHHHHHCCCGGGEEEEETTEECCTTSBTGGGTCCTTCEEEEEECC
T ss_pred EEEEEEECCEEEEEEECCCCcHHHHHHHHHHHhCCCHHHEEEEECCeEcCCCCCHHHcCCCCCCEEEEEEcC
Confidence 888999988999999999999999999999999999999999999999999999999999999999999764
No 12
>1i6z_A BAG-family molecular chaperone regulator-1; triple helix bundle; NMR {Mus musculus} SCOP: a.7.7.1
Probab=99.68 E-value=6.8e-17 Score=139.41 Aligned_cols=109 Identities=22% Similarity=0.338 Sum_probs=92.6
Q ss_pred CCCEEEEeecCCchHHHHHHHhhhhhhhhhhhhHHHHHHHHHHhhhhHHHHHH-------HHHhCCCcchhhHhhHHHHH
Q 018493 117 DKSKLVLVEDPISQEKRLLEMRKNAKLEKASKSISEISLEVDRLAGQVSALES-------IITKGGKVAEKDVLNLIELL 189 (355)
Q Consensus 117 dgSkImLv~~p~s~E~~~~e~kk~k~ieka~~aIs~V~~eVDkLa~ev~~LE~-------~I~~g~Kv~eke~~~LsE~L 189 (355)
+|++|||+|.+.++|++ .+.++.++++++ +..+...++.+..++..|++ .+.+..++ +|++..++|.+
T Consensus 1 ~G~KvMviGkK~~peee-~~lKkL~dveks---v~~~~k~l~~l~~el~~iekGFL~k~l~~ea~~kl-~Krik~~~E~~ 75 (135)
T 1i6z_A 1 GSPEFMLIGEKSNPEEE-VELKKLKDLEVS---AEKIANHLQELNKELSGIQQGFLAKELQAEALCKL-DRKVKATIEQF 75 (135)
T ss_dssp CCCCCSSSCCCCCHHHH-HHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHTSSSCHHHHHHHHHHH-HHHHHHHHHHH
T ss_pred CCceEEEeCCCCChHHH-HHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHhcchhhhhhhhHHHHH-HHHHHHHHHHH
Confidence 69999999999999988 677777777775 55666788888888888876 33455677 99999999999
Q ss_pred HHHHHhccCCC---CChhhHHHHHHHHHHHHHHHHHHHHhhhhc
Q 018493 190 MNQLLKLDGIM---ADGDVKLQRKMQVRRVQKYVETLDMLKIKN 230 (355)
Q Consensus 190 Mq~LLKLD~Ie---aeGdaR~qRK~~VkrVQ~~Le~LD~lk~~n 230 (355)
|+.|++||++. .+.++|.+||.+|++||.+|+++|.+.++-
T Consensus 76 Mk~LE~LDs~~ip~~~~~~R~kRK~lV~~iQ~~L~~~D~l~~~~ 119 (135)
T 1i6z_A 76 MKILEEIDTMVLPEQFKDSRLKRKNLVKKVQVFLAECDTVEQYI 119 (135)
T ss_dssp HHHHHHHHTCCCCSCCHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHhccccCCccHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 99999999994 344899999999999999999999999763
No 13
>2kd0_A LRR repeats and ubiquitin-like domain-containing protein AT2G30105; ubiquitin-like protein, NESG, leucine-rich repeat, structural genomics; NMR {Arabidopsis thaliana}
Probab=99.66 E-value=2.4e-16 Score=124.75 Aligned_cols=75 Identities=28% Similarity=0.356 Sum_probs=71.4
Q ss_pred CCeeEEEEEeCCEEEEEEEcCCCCHHHHHHHHhcccCCCccCcEEeccCcccCCchhhhhcCCCCCCEEEEeecC
Q 018493 53 PPTIRVRVKYGSIYHEIHINSQATFGELKKLLTGPTGLHHEDQKLIYKDKERDSKAFLDVVGVKDKSKLVLVEDP 127 (355)
Q Consensus 53 ~~~I~V~VK~gg~~~~V~V~~~sTVgdLK~~I~e~TGVppe~QKLIykGK~ldD~~tLs~~GIKdgSkImLv~~p 127 (355)
-.++.+.+++++..+.++|++++||++||++|++.+|+|+++|||+|+|+.++|+.+|++|||++|++|+|+..+
T Consensus 10 ~~~~~~~~~~~g~~~~l~v~~~~TV~~LK~~I~~~~gip~~~qrL~~~Gk~L~D~~tL~~~gi~~g~~l~l~~s~ 84 (85)
T 2kd0_A 10 HSTIKLTVKFGGKSIPLSVSPDCTVKDLKSQLQPITNVLPRGQKLIFKGKVLVETSTLKQSDVGSGAKLMLMASQ 84 (85)
T ss_dssp CCCEEEEEEETTEEEEEEECTTSBHHHHHHHHHHHHCCCTTTCEEEETTEECCTTCBTTTTTCCTTEEEEEECCC
T ss_pred CCcEEEEEEECCEEEEEEECCCCcHHHHHHHHHHHHCcChHHEEEEECCeECCCcCCHHHCCCCCCCEEEEEEeC
Confidence 467889999999999999999999999999999999999999999999999999999999999999999999865
No 14
>3phx_B Ubiquitin-like protein ISG15; OTU domain, DE-ubiquitinase, DE-isgylase, hydrolase-protein complex; 1.60A {Homo sapiens}
Probab=99.65 E-value=3e-16 Score=120.77 Aligned_cols=72 Identities=17% Similarity=0.214 Sum_probs=68.3
Q ss_pred CeeEEEEEe-CCEEEEEEEcCCCCHHHHHHHHhcccCCCccCcEEeccCcccCCchhhhhcCCCCCCEEEEee
Q 018493 54 PTIRVRVKY-GSIYHEIHINSQATFGELKKLLTGPTGLHHEDQKLIYKDKERDSKAFLDVVGVKDKSKLVLVE 125 (355)
Q Consensus 54 ~~I~V~VK~-gg~~~~V~V~~~sTVgdLK~~I~e~TGVppe~QKLIykGK~ldD~~tLs~~GIKdgSkImLv~ 125 (355)
+.+.|.|++ +|..+.++|++++||++||++|++.+|+|+++|+|+|+|+.++|+.+|++|||++|++|+|+.
T Consensus 3 ~~m~i~Vk~~~g~~~~~~v~~~~tV~~lK~~i~~~~gip~~~qrL~~~G~~L~d~~tL~~~~i~~~~~l~l~~ 75 (79)
T 3phx_B 3 EPLSILVRNNKGRSSTYEVRLTQTVAHLKQQVSGLEGVQDDLFWLTFEGKPLEDQLPLGEYGLKPLSTVFMNL 75 (79)
T ss_dssp CCEEEEEECTTSCEEEEEECTTSBHHHHHHHHHHHHTCCGGGEEEEETTEECCTTSBGGGGTCCTTCEEEEEE
T ss_pred CCEEEEEEeCCCCEEEEEECCcChHHHHHHHHHhhcCCCHHHEEEEECCEECCCCCcHHHCCCCCCCEEEEEE
Confidence 468899997 678899999999999999999999999999999999999999999999999999999999985
No 15
>3v6c_B Ubiquitin; structural genomics, structural genomics consortium, SGC, UB protease, hydrolase-signaling protein complex; 1.70A {Homo sapiens} PDB: 3v6e_B
Probab=99.64 E-value=4.6e-16 Score=123.57 Aligned_cols=76 Identities=18% Similarity=0.299 Sum_probs=70.5
Q ss_pred CCCCCeeEEEEEe-CCEEEEEEEcCCCCHHHHHHHHhcccCCCccCcEEeccCcccCCchhhhhcCCCCCCEEEEee
Q 018493 50 SAPPPTIRVRVKY-GSIYHEIHINSQATFGELKKLLTGPTGLHHEDQKLIYKDKERDSKAFLDVVGVKDKSKLVLVE 125 (355)
Q Consensus 50 ~~~~~~I~V~VK~-gg~~~~V~V~~~sTVgdLK~~I~e~TGVppe~QKLIykGK~ldD~~tLs~~GIKdgSkImLv~ 125 (355)
..+...|.|+|+. +|..+.|+|++++||++||++|++.+|+|+++|||+|+|+.++|+.+|.+|||++|++|+|+.
T Consensus 12 ~~~~~~m~i~Vk~~~g~~~~l~v~~~~TV~~LK~~I~~~~gip~~~qrL~~~Gk~L~D~~tL~~~gi~~g~~i~l~~ 88 (91)
T 3v6c_B 12 LVPRGSMQIFVNTLTGTHITLEVEPSDTIENVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYNIQKESTLHLVL 88 (91)
T ss_dssp CCCCCSEEEEEECTTSCEEEEEECTTCBHHHHHHHHHHHHCCCGGGCEEEETTEECCTTCBTGGGTCCTTCEEEEEC
T ss_pred CCCCCeEEEEEEeCCCCEEEEEECCCCCHHHHHHHHHhhhCCChhhEEEEECCeECCCcCcHHHCCCCCCCEEEEEE
Confidence 3445679999995 678899999999999999999999999999999999999999999999999999999999985
No 16
>2dzi_A Ubiquitin-like protein 4A; GDX, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.64 E-value=5.2e-16 Score=119.12 Aligned_cols=75 Identities=20% Similarity=0.245 Sum_probs=69.3
Q ss_pred CCCeeEEEEEe-CCEEEEEEEcCCCCHHHHHHHHhcccCCCccCcEEeccCcccCCchhhhhcCCCCCCEEEEeec
Q 018493 52 PPPTIRVRVKY-GSIYHEIHINSQATFGELKKLLTGPTGLHHEDQKLIYKDKERDSKAFLDVVGVKDKSKLVLVED 126 (355)
Q Consensus 52 ~~~~I~V~VK~-gg~~~~V~V~~~sTVgdLK~~I~e~TGVppe~QKLIykGK~ldD~~tLs~~GIKdgSkImLv~~ 126 (355)
....|.|+|+. ++..+.++|++++||++||++|++.+|+|+++|+|+|+|+.++|+.+|++|||++|++|+|+..
T Consensus 4 ~~~~m~i~vk~~~g~~~~~~v~~~~tV~~LK~~i~~~~~i~~~~qrL~~~gk~L~d~~tL~~~~i~~g~~i~l~~~ 79 (81)
T 2dzi_A 4 GSSGMQLTVKALQGRECSLQVPEDELVSTLKQLVSEKLNVPVRQQRLLFKGKALADGKRLSDYSIGPNSKLNLVVK 79 (81)
T ss_dssp SSSSEEEEEEETTSCEEEEEECSSCBHHHHHHHHHHHTCCCTTTCEEEETTEECCTTSBGGGGTCCSSBCCEEECC
T ss_pred CCCcEEEEEEeCCCCEEEEEECCCCcHHHHHHHHHHHHCcCHHHEEEEECCeECCCCCcHHHcCCCCCCEEEEEEe
Confidence 34678899985 5688999999999999999999999999999999999999999999999999999999999864
No 17
>3plu_A Ubiquitin-like modifier HUB1; ubiquitin-like, HUB-1, SNU66, peptide binding protein; 1.40A {Saccharomyces cerevisiae} PDB: 3plv_A 1m94_A 1p0r_A
Probab=99.63 E-value=5.4e-16 Score=126.69 Aligned_cols=73 Identities=19% Similarity=0.152 Sum_probs=68.6
Q ss_pred CCCeeEEEEEe-CCEEEEEEEcCCCCHHHHHHHHhcccCCCccCcEEeccCcccCCchhhhhcCCCCCCEEEEe
Q 018493 52 PPPTIRVRVKY-GSIYHEIHINSQATFGELKKLLTGPTGLHHEDQKLIYKDKERDSKAFLDVVGVKDKSKLVLV 124 (355)
Q Consensus 52 ~~~~I~V~VK~-gg~~~~V~V~~~sTVgdLK~~I~e~TGVppe~QKLIykGK~ldD~~tLs~~GIKdgSkImLv 124 (355)
.+++|.|.|+. .|+++.|.+.+++||++||++|+++.|+|+++|+|+|.|++++|..+|++|||++|++|+|.
T Consensus 18 ~~~mIqI~Vk~~~Gkk~~v~v~p~DTI~~LK~~I~~k~Gip~~qQrLif~Gk~LkD~~TL~dY~I~dgstLhL~ 91 (93)
T 3plu_A 18 GSHMIEVVVNDRLGKKVRVKCLGEDSVGDFKKVLSLQIGTQPNKIVLQKGGSVLKDHISLEDYEVHDQTNLELY 91 (93)
T ss_dssp --CEEEEEEECTTSCEEEEEEETTSBHHHHHHHHHHHHTCCGGGEEEEETTEECCTTSBTGGGTCCTTCEEEEE
T ss_pred CCceEEEEEECCCCCEEEEEECCcCHHHHHHHHHHHHhCCCHHHEEEEeCCEEccCcCCHHHcCCCCCCEEEEE
Confidence 56899999996 67899999999999999999999999999999999999999999999999999999999985
No 18
>3dbh_I NEDD8; cell cycle, activating enzyme, apoptosis, membrane, UBL conjugation pathway, ATP-binding, ligase, nucleotide- binding, polymorphism; 2.85A {Homo sapiens} SCOP: d.15.1.1 PDB: 3dbr_I 3dbl_I
Probab=99.63 E-value=7.4e-16 Score=120.22 Aligned_cols=75 Identities=21% Similarity=0.253 Sum_probs=70.1
Q ss_pred CCCCeeEEEEEe-CCEEEEEEEcCCCCHHHHHHHHhcccCCCccCcEEeccCcccCCchhhhhcCCCCCCEEEEee
Q 018493 51 APPPTIRVRVKY-GSIYHEIHINSQATFGELKKLLTGPTGLHHEDQKLIYKDKERDSKAFLDVVGVKDKSKLVLVE 125 (355)
Q Consensus 51 ~~~~~I~V~VK~-gg~~~~V~V~~~sTVgdLK~~I~e~TGVppe~QKLIykGK~ldD~~tLs~~GIKdgSkImLv~ 125 (355)
.....|.|+|++ .+..+.|+|++++||.+||++|++.+|+|+++|+|+|+|+.++|+.+|.+|||++|++|+|+.
T Consensus 8 ~~~~~m~i~vk~~~g~~~~~~v~~~~tV~~lK~~i~~~~gip~~~qrL~~~G~~L~d~~tL~~~~i~~~~~i~l~~ 83 (88)
T 3dbh_I 8 GSGGSMLIKVKTLTGKEIEIDIEPTDKVERIKERVEEKEGIPPQQQRLIYSGKQMNDEKTAADYKILGGSVLHLVL 83 (88)
T ss_dssp SCCCCEEEEEECTTSCEEEEEECTTCBHHHHHHHHHHHHCCCGGGCCEEETTEECCTTSBGGGGTCCTTCEEEECC
T ss_pred CCCCcEEEEEEcCCCCEEEEEECCCCCHHHHHHHHHHHHCcCHHHEEEEECCeECCCCCcHHHcCCCCCCEEEEEE
Confidence 345679999996 678899999999999999999999999999999999999999999999999999999999975
No 19
>4eew_A Large proline-rich protein BAG6; ubiquitin-like fold, GP78-binding, chaperone; 1.30A {Homo sapiens}
Probab=99.63 E-value=6.8e-16 Score=121.29 Aligned_cols=72 Identities=25% Similarity=0.345 Sum_probs=68.1
Q ss_pred CCeeEEEEEe-CCEEEEEEEcCCCCHHHHHHHHhcccCCCccCcEEeccCcccCCchhhhhcCCCCCCEEEEee
Q 018493 53 PPTIRVRVKY-GSIYHEIHINSQATFGELKKLLTGPTGLHHEDQKLIYKDKERDSKAFLDVVGVKDKSKLVLVE 125 (355)
Q Consensus 53 ~~~I~V~VK~-gg~~~~V~V~~~sTVgdLK~~I~e~TGVppe~QKLIykGK~ldD~~tLs~~GIKdgSkImLv~ 125 (355)
...|.|+|++ ++..+.++|++++||++||++|++.+|+|+++|||+|+|+.++|+.+|++||| +|++|+|+.
T Consensus 15 ~~~m~i~Vk~~~g~~~~~~v~~~~tV~~lK~~i~~~~gip~~~qrLi~~Gk~L~D~~tL~~~~i-~g~~i~lv~ 87 (88)
T 4eew_A 15 PDSLEVLVKTLDSQTRTFIVGAQMNVKEFKEHIAASVSIPSEKQRLIYQGRVLQDDKKLQEYNV-GGKVIHLVE 87 (88)
T ss_dssp CCEEEEEEEETTSCEEEEEEETTCBHHHHHHHHHHHHTCCGGGEEEEETTEECCTTSBGGGGTC-TTEEEEEEE
T ss_pred CCeEEEEEEcCCCCEEEEEECCCCCHHHHHHHHHHHhCCCHHHEEEEECCEECCCCCcHHHcCC-CCcEEEEEE
Confidence 4679999998 57889999999999999999999999999999999999999999999999999 899999974
No 20
>1wh3_A 59 kDa 2'-5'-oligoadenylate synthetase like protein; P59 OASL, ubiquitin family, structural genomics; NMR {Homo sapiens} SCOP: d.15.1.1
Probab=99.62 E-value=1.2e-15 Score=119.20 Aligned_cols=76 Identities=22% Similarity=0.272 Sum_probs=70.8
Q ss_pred CCCCeeEEEEEe-CCEEEEEEEcCCCCHHHHHHHHhcccCCCccCcEEeccCcccCCchhhhhcCCCCCCEEEEeec
Q 018493 51 APPPTIRVRVKY-GSIYHEIHINSQATFGELKKLLTGPTGLHHEDQKLIYKDKERDSKAFLDVVGVKDKSKLVLVED 126 (355)
Q Consensus 51 ~~~~~I~V~VK~-gg~~~~V~V~~~sTVgdLK~~I~e~TGVppe~QKLIykGK~ldD~~tLs~~GIKdgSkImLv~~ 126 (355)
.+.++|.|+|++ .+..+.++|++++||.+||++|++.+|+|+++|+|+|+|+.++|+.+|++|||++|++|+|+..
T Consensus 3 ~~~~~m~i~Vk~~~g~~~~~~v~~~~tV~~lK~~i~~~~gi~~~~qrL~~~Gk~L~d~~tL~~~~i~~g~~i~l~~~ 79 (87)
T 1wh3_A 3 SGSSGIQVFVKNPDGGSYAYAINPNSFILGLKQQIEDQQGLPKKQQQLEFQGQVLQDWLGLGIYGIQDSDTLILSKK 79 (87)
T ss_dssp CCSSSEEEEEEETTTEEEEEEECSSSBHHHHHHHHHHHTCCCTTTEEEEETTEECCSSSBHHHHTCCTTEEEEEEEC
T ss_pred CCCCCEEEEEEcCCCCEEEEEeCCCChHHHHHHHHHHHhCCChHHEEEEECCEEccCCCCHHHCCCCCCCEEEEEEe
Confidence 355789999998 5788999999999999999999999999999999999999999999999999999999999864
No 21
>2kk8_A Uncharacterized protein AT4G05270; solution arabidopsis thaliana, uncharacterized putative protein, NESG, structural genomics; NMR {Arabidopsis thaliana}
Probab=99.62 E-value=6.8e-16 Score=122.19 Aligned_cols=74 Identities=12% Similarity=0.126 Sum_probs=68.8
Q ss_pred CeeEEEEEe-CCEEEEEEEcCCCCHHHHHHHHhcccCCCccCcEEeccCcc-cCCchhhhhcCCCCCCEEEEeecC
Q 018493 54 PTIRVRVKY-GSIYHEIHINSQATFGELKKLLTGPTGLHHEDQKLIYKDKE-RDSKAFLDVVGVKDKSKLVLVEDP 127 (355)
Q Consensus 54 ~~I~V~VK~-gg~~~~V~V~~~sTVgdLK~~I~e~TGVppe~QKLIykGK~-ldD~~tLs~~GIKdgSkImLv~~p 127 (355)
..++|.|+. .|+.+.++|++++||++||++|++.+|+|+++|||+|+|+. ++|+.+|++|||++|++|+|+..|
T Consensus 9 ~~~~i~vk~l~g~~~~l~v~~~~TV~~LK~~I~~~~gip~~~QrLi~~Gk~lL~D~~tL~~y~I~~gs~i~lv~~p 84 (84)
T 2kk8_A 9 SHMKFLVENLNGSSFELEVDYRDTLLVVKQKIERSQHIPVSKQTLIVDGIVILREDLTVEQCQIVPTSDIQLEVSS 84 (84)
T ss_dssp CCEEEEEEETTSCEEEEEECTTSBHHHHHHHHHHHHTCCGGGEEEEETTEECCCSSSBHHHHTCCTTSCEEEEECC
T ss_pred CceEEEEEecCCcEEEEEECCCChHHHHHHHHHHHHCcChHHEEEEECCEEecCCcCCHHHcCCCCCCEEEEEEcC
Confidence 457888885 67889999999999999999999999999999999999999 999999999999999999998754
No 22
>2lxa_A Ubiquitin-like protein MDY2; ubiquitin-like domain, protein-protein interaction, SGT2 BIN domain, GET pathway, protein binding; NMR {Saccharomyces cerevisiae}
Probab=99.62 E-value=3.6e-16 Score=125.48 Aligned_cols=74 Identities=20% Similarity=0.258 Sum_probs=66.4
Q ss_pred eeEEEEEe-CCEEEEEEE--cCCCCHHHHHHHH-hcccCCCccCcEEeccCcccCCchhhhhcCC-CCCCEEEEeecCC
Q 018493 55 TIRVRVKY-GSIYHEIHI--NSQATFGELKKLL-TGPTGLHHEDQKLIYKDKERDSKAFLDVVGV-KDKSKLVLVEDPI 128 (355)
Q Consensus 55 ~I~V~VK~-gg~~~~V~V--~~~sTVgdLK~~I-~e~TGVppe~QKLIykGK~ldD~~tLs~~GI-KdgSkImLv~~p~ 128 (355)
+|.|+||+ .+.++.|+| ++++||++||++| ++.+|+|+++|||||+||.|+|+.+|++||| ++|++|+|++.|.
T Consensus 1 mmqI~VKtl~g~~~~i~v~v~~~~TV~~lK~~I~~~~~gip~~~QrLi~~Gk~L~D~~tL~~y~I~~~~stl~v~~~~~ 79 (87)
T 2lxa_A 1 MVHLTLKKIQAPKFSIEHDFSPSDTILQIKQHLISEEKASHISEIKLLLKGKVLHDNLFLSDLKVTPANSTITVMIKPN 79 (87)
T ss_dssp CCEEEEEECSSSCEECCEECCTTCBHHHHHHHHHHTTSCSSSTTEEEEETTEECCTTCBHHHHCCCGGGCEEEEEECCC
T ss_pred CEEEEEEcCCCCEEEEEEcCCCCCcHHHHHHHHHHHhcCCChHHEEEEECCEECcCcCCHHHcCCCCCCCEEEEEcCCC
Confidence 47889997 456676664 4999999999999 9999999999999999999999999999999 6999999999775
No 23
>4dwf_A HLA-B-associated transcript 3; ubiquitin-like domain, BAT3 protein, PF00240, structural GEN joint center for structural genomics, JCSG; 1.80A {Homo sapiens} PDB: 1wx9_A
Probab=99.62 E-value=1.2e-15 Score=120.27 Aligned_cols=74 Identities=24% Similarity=0.336 Sum_probs=69.5
Q ss_pred CCeeEEEEEe-CCEEEEEEEcCCCCHHHHHHHHhcccCCCccCcEEeccCcccCCchhhhhcCCCCCCEEEEeecC
Q 018493 53 PPTIRVRVKY-GSIYHEIHINSQATFGELKKLLTGPTGLHHEDQKLIYKDKERDSKAFLDVVGVKDKSKLVLVEDP 127 (355)
Q Consensus 53 ~~~I~V~VK~-gg~~~~V~V~~~sTVgdLK~~I~e~TGVppe~QKLIykGK~ldD~~tLs~~GIKdgSkImLv~~p 127 (355)
.++|.|+|++ .+..+.|+|++++||.+||++|++.+|+|+++|||+|+|+.|+|+.+|.+||| +|++|+|+...
T Consensus 3 ~~~m~i~Vk~~~g~~~~~~v~~~~tV~~lK~~i~~~~gip~~~qrLi~~Gk~L~d~~tL~~~~i-~g~~i~l~~~~ 77 (90)
T 4dwf_A 3 PDSLEVLVKTLDSQTRTFIVGAQMNVKEFKEHIAASVSIPSEKQRLIYQGRVLQDDKKLQEYNV-GGKVIHLVERA 77 (90)
T ss_dssp CCEEEEEEEETTCCEEEEEEETTCBHHHHHHHHHHHHTCCGGGEEEEETTEECCTTSBGGGGTC-TTEEEEEEECC
T ss_pred CcEEEEEEEcCCCCEEEEEECCCCCHHHHHHHHHHHhCCCHHHEEEEECCeECCCCCCHHHcCC-CCcEEEEEecC
Confidence 4689999998 57889999999999999999999999999999999999999999999999999 89999999754
No 24
>3m62_B UV excision repair protein RAD23; armadillo-like repeats, UBL conjugation pathway, DNA damage, nucleus, phosphoprotein; HET: 1PE; 2.40A {Saccharomyces cerevisiae}
Probab=99.62 E-value=4.8e-16 Score=127.87 Aligned_cols=73 Identities=19% Similarity=0.237 Sum_probs=67.5
Q ss_pred eeEEEEEe-CCEEEEEEEcCCCCHHHHHHHHhcccCCCccCcEEeccCcccCCchhhhhcCCCCCCEEEEeecC
Q 018493 55 TIRVRVKY-GSIYHEIHINSQATFGELKKLLTGPTGLHHEDQKLIYKDKERDSKAFLDVVGVKDKSKLVLVEDP 127 (355)
Q Consensus 55 ~I~V~VK~-gg~~~~V~V~~~sTVgdLK~~I~e~TGVppe~QKLIykGK~ldD~~tLs~~GIKdgSkImLv~~p 127 (355)
+|.|+|++ +|..+.|+|++++||++||++|++.+|+|+++|||+|+|+.|+|+.+|++|||++|++|+|+..+
T Consensus 1 mm~I~Vk~~~g~~~~l~v~~~~TV~~LK~~I~~~~gip~~~QrLi~~Gk~L~D~~tL~~~~i~~g~~i~lv~~~ 74 (106)
T 3m62_B 1 MVSLTFKNFKKEKVPLDLEPSNTILETKTKLAQSISCEESQIKLIYSGKVLQDSKTVSECGLKDGDQVVFMVSQ 74 (106)
T ss_dssp --CEEEECTTCCEEEECCCTTSBHHHHHHHHHHTTTSCGGGCEEEETTEECCTTSBTTTTTCCTTCEEEEECCC
T ss_pred CEEEEEEeCCCCEEEEEECCCCcHHHHHHHHHHHHCCChhhEEEEECCEECCCcCCHHHcCCCCCCEEEEEEcC
Confidence 47889997 67889999999999999999999999999999999999999999999999999999999999753
No 25
>2wyq_A HHR23A, UV excision repair protein RAD23 homolog A; DNA binding protein, DNA excision repair, proteasomal degrad polyubiquitin; 1.65A {Homo sapiens} PDB: 1p98_A 1p9d_U 1p1a_A
Probab=99.62 E-value=1.3e-15 Score=118.25 Aligned_cols=74 Identities=18% Similarity=0.223 Sum_probs=68.5
Q ss_pred CeeEEEEEe-CCEEEEEEEcCCCCHHHHHHHHhcc---cCCCccCcEEeccCcccCCchhhhhcCCCCCCEEEEeecC
Q 018493 54 PTIRVRVKY-GSIYHEIHINSQATFGELKKLLTGP---TGLHHEDQKLIYKDKERDSKAFLDVVGVKDKSKLVLVEDP 127 (355)
Q Consensus 54 ~~I~V~VK~-gg~~~~V~V~~~sTVgdLK~~I~e~---TGVppe~QKLIykGK~ldD~~tLs~~GIKdgSkImLv~~p 127 (355)
.+|.|+|++ ++..+.++|++++||++||++|++. +|+|+++|+|+|+|+.++|+.+|++|||++|++|+|+..+
T Consensus 4 ~~m~i~vk~~~g~~~~~~v~~~~TV~~lK~~i~~~~~~~gip~~~qrLi~~Gk~L~D~~tL~~~~i~~g~~i~l~~~~ 81 (85)
T 2wyq_A 4 MAVTITLKTLQQQTFKIRMEPDETVKVLKEKIEAEKGRDAFPVAGQKLIYAGKILSDDVPIRDYRIDEKNFVVVMVTK 81 (85)
T ss_dssp CCEEEEEEETTSCEEEEEECTTSBHHHHHHHHHHHHCTTTCCGGGEEEEETTEECCTTSBGGGGCCCTTSEEEEEEC-
T ss_pred ceEEEEEEECCCCEEEEEECCCCCHHHHHHHHHhhccccCCCHHHeEEEECCEECcCCCCHHHcCCCCCCEEEEEEcC
Confidence 568999998 4788999999999999999999997 9999999999999999999999999999999999999754
No 26
>3shq_A UBLCP1; phosphatase, hydrolase; 1.96A {Drosophila melanogaster}
Probab=99.61 E-value=8.3e-16 Score=149.25 Aligned_cols=77 Identities=23% Similarity=0.284 Sum_probs=70.7
Q ss_pred CCCeeEEEEEeCCEEEEEEEcCCCCHHHHHHHHhcccCCCccCcEEe---ccCcccCCchhhhhcCCCCCCEEEEeecCC
Q 018493 52 PPPTIRVRVKYGSIYHEIHINSQATFGELKKLLTGPTGLHHEDQKLI---YKDKERDSKAFLDVVGVKDKSKLVLVEDPI 128 (355)
Q Consensus 52 ~~~~I~V~VK~gg~~~~V~V~~~sTVgdLK~~I~e~TGVppe~QKLI---ykGK~ldD~~tLs~~GIKdgSkImLv~~p~ 128 (355)
....|+|+|||+|+.|.|+|++++||++||++|++.|||||++|||| |+||.++|+.+|++|||++|++|||||+++
T Consensus 2 ~~~~i~i~Vk~~g~~~~v~v~~~~Tv~~lK~~I~~~tgVpp~~QkLi~~k~~Gk~l~D~~~L~~~~ik~g~~l~L~gs~~ 81 (320)
T 3shq_A 2 EVKEVVVIVKWSGKEYPVDLTDQDTVEVLRHEIFRKTQVRPERQKLLNLKYKGKTAADNVKISALELKPNFKLMMVGSTE 81 (320)
T ss_dssp --CEEEEEEEETTEEEEEEEETTSBHHHHHHHHHHHHCCCGGGCEETTCBSSSSBCCTTSBTTSSCCC--CEEEEECCCC
T ss_pred CCceEEEEEEECCEEEEEEECCCCcHHHHHHHHHHHHCcCHHHeEEeecccCCcccCccccHHHcCCCCCCEEEEEccch
Confidence 35689999999999999999999999999999999999999999999 899999999999999999999999999765
No 27
>4a20_A Ubiquitin-like protein MDY2; protein binding, GET-pathway, tail-anchored proteins; 1.78A {Saccharomyces cerevisiae} PDB: 2lxc_A 4goc_A
Probab=99.61 E-value=1.5e-15 Score=124.51 Aligned_cols=77 Identities=19% Similarity=0.271 Sum_probs=67.0
Q ss_pred CCCCeeEEEEEe-CCEEEEE--EEcCCCCHHHHHHHH-hcccCCCccCcEEeccCcccCCchhhhhcCC-CCCCEEEEee
Q 018493 51 APPPTIRVRVKY-GSIYHEI--HINSQATFGELKKLL-TGPTGLHHEDQKLIYKDKERDSKAFLDVVGV-KDKSKLVLVE 125 (355)
Q Consensus 51 ~~~~~I~V~VK~-gg~~~~V--~V~~~sTVgdLK~~I-~e~TGVppe~QKLIykGK~ldD~~tLs~~GI-KdgSkImLv~ 125 (355)
...+.|.|+||+ .|.++.+ +|++++||++||++| ++.+|+|+++|||||+||.|+|+.+|++||| ++|++|+||.
T Consensus 15 ~~~~~m~I~VKtl~g~~~~i~v~v~~~~TV~~lK~~I~~~~~gip~~~QrLi~~Gk~L~D~~tL~dy~I~~~g~ti~lmv 94 (98)
T 4a20_A 15 MDNAAVHLTLKKIQAPKFSIEHDFSPSDTILQIKQHLISEEKASHISEIKLLLKGKVLHDNLFLSDLKVTPANSTITVMI 94 (98)
T ss_dssp ---CCEEEEEEECSSSCEEEEEEECTTCBHHHHHHHHHHTTSCSCGGGEEEEETTEEECTTCBGGGSCCBTTBCEEEEEE
T ss_pred CCCCCEEEEEEcCCCCEEEEEEecCCCChHHHHHHHHHHHhcCCChhhEEEEECCEECcCcCCHHHcCcCCCCCEEEEEE
Confidence 456789999998 4555555 667999999999999 9999999999999999999999999999999 9999999998
Q ss_pred cC
Q 018493 126 DP 127 (355)
Q Consensus 126 ~p 127 (355)
++
T Consensus 95 sk 96 (98)
T 4a20_A 95 KP 96 (98)
T ss_dssp CC
T ss_pred eC
Confidence 54
No 28
>1wju_A NEDD8 ultimate buster-1; ubiquitin-like domain, structural genomics, riken structural genomics/proteomics initiative, RSGI, protein binding; NMR {Homo sapiens} SCOP: d.15.1.1
Probab=99.60 E-value=1.3e-15 Score=125.73 Aligned_cols=78 Identities=21% Similarity=0.173 Sum_probs=68.7
Q ss_pred CeeEEEEEe---CCEEEEEEEcCCCCHHHHHHHHhcccCCCccCcEEeccCcccCCchhhhhcCCCCCCEEEEeecCCch
Q 018493 54 PTIRVRVKY---GSIYHEIHINSQATFGELKKLLTGPTGLHHEDQKLIYKDKERDSKAFLDVVGVKDKSKLVLVEDPISQ 130 (355)
Q Consensus 54 ~~I~V~VK~---gg~~~~V~V~~~sTVgdLK~~I~e~TGVppe~QKLIykGK~ldD~~tLs~~GIKdgSkImLv~~p~s~ 130 (355)
++|.|++.. ++.++.|+|++++||++||++|++..|||+++|||||+||+|+|+.+|++|||++|++||||.-+.+.
T Consensus 16 ati~V~~~~~~~~~~~~~lev~~~~TV~~lK~kI~~k~gip~~qQrLI~~GKiL~D~~TL~~y~I~~gsti~vl~lrg~~ 95 (100)
T 1wju_A 16 ATIEVFLPPRLKKDRKNLLETRLHITGRELRSKIAETFGLQENYIKIVINKKQLQLGKTLEEQGVAHNVKAMVLELKQSS 95 (100)
T ss_dssp EEEEEECCTTTCCSSSEEEEEESSSBHHHHHHHHHHHTTCCSTTCEEEETTEECCTTSBHHHHTCCSSEEEEEECCCCCC
T ss_pred EEEEEEecCCCCCCcEEEEEeCCcCHHHHHHHHHHHHHCcCHHHeEEEeCCeECCCCCcHHHcCCCCCCEEEEEEECCCC
Confidence 356666655 25789999999999999999999999999999999999999999999999999999999998755543
Q ss_pred H
Q 018493 131 E 131 (355)
Q Consensus 131 E 131 (355)
+
T Consensus 96 ~ 96 (100)
T 1wju_A 96 G 96 (100)
T ss_dssp C
T ss_pred c
Confidence 3
No 29
>1ndd_A NEDD8, protein (ubiquitin-like protein NEDD8); proteolysis, signaling protei; 1.60A {Homo sapiens} SCOP: d.15.1.1 PDB: 1r4m_I 1r4n_I* 1xt9_B 2ko3_A 3gzn_I* 2bkr_B 2nvu_I* 3dqv_A 1bt0_A
Probab=99.60 E-value=1.7e-15 Score=114.21 Aligned_cols=70 Identities=23% Similarity=0.275 Sum_probs=65.8
Q ss_pred eEEEEEe-CCEEEEEEEcCCCCHHHHHHHHhcccCCCccCcEEeccCcccCCchhhhhcCCCCCCEEEEee
Q 018493 56 IRVRVKY-GSIYHEIHINSQATFGELKKLLTGPTGLHHEDQKLIYKDKERDSKAFLDVVGVKDKSKLVLVE 125 (355)
Q Consensus 56 I~V~VK~-gg~~~~V~V~~~sTVgdLK~~I~e~TGVppe~QKLIykGK~ldD~~tLs~~GIKdgSkImLv~ 125 (355)
+.|+|++ .+..+.++|++++||++||++|++.+|+|+++|+|+|+|+.++|+.+|++|||++|++|+|+.
T Consensus 1 M~i~vk~~~g~~~~~~v~~~~tv~~lK~~i~~~~~i~~~~q~L~~~g~~L~d~~tL~~~~i~~g~~i~l~~ 71 (76)
T 1ndd_A 1 MLIKVKTLTGKEIEIDIEPTDKVERIKERVEEKEGIPPQQQRLIYSGKQMNDEKTAADYKILGGSVLHLVL 71 (76)
T ss_dssp CEEEEECTTSCEEEEECCTTCBHHHHHHHHHHHHCCCGGGEEEEETTEECCTTSBGGGGTCCTTCEEEEEE
T ss_pred CEEEEECCCCCEEEEEECCCChHHHHHHHHHHHHCcChHHEEEEECCEECCCCCcHHHcCCCCCCEEEEEE
Confidence 4688887 578899999999999999999999999999999999999999999999999999999999985
No 30
>3mtn_B UBA80, ubcep1, ubiquitin variant UBV.21.4; ubiquitin-specific protease activity, hydrolase, ubiquitin B structural genomics consortium, SGC; 2.70A {Homo sapiens} SCOP: d.15.1.1
Probab=99.60 E-value=2.1e-15 Score=116.43 Aligned_cols=72 Identities=18% Similarity=0.281 Sum_probs=67.5
Q ss_pred CeeEEEEEe-CCEEEEEEEcCCCCHHHHHHHHhcccCCCccCcEEeccCcccCCchhhhhcCCCCCCEEEEee
Q 018493 54 PTIRVRVKY-GSIYHEIHINSQATFGELKKLLTGPTGLHHEDQKLIYKDKERDSKAFLDVVGVKDKSKLVLVE 125 (355)
Q Consensus 54 ~~I~V~VK~-gg~~~~V~V~~~sTVgdLK~~I~e~TGVppe~QKLIykGK~ldD~~tLs~~GIKdgSkImLv~ 125 (355)
.+|.|+|++ .+..+.|+|++++||.+||++|++.+|+|+++|+|+|+|+.++|+.+|++|||++|++|+|+.
T Consensus 2 s~m~i~vk~~~g~~~~~~v~~~~tV~~lK~~i~~~~~i~~~~qrL~~~g~~L~d~~tL~~~~i~~~~~l~l~~ 74 (85)
T 3mtn_B 2 SHMQIFVKTLTGKTITLEVEPSDTIENVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYNIQKWSTLFLLL 74 (85)
T ss_dssp -CEEEEEECTTSCEEEEEECTTCBHHHHHHHHHHHHCCCGGGCEEEETTEECCTTSBTGGGTCCTTCEEEEEC
T ss_pred CeEEEEEEcCCCCEEEEEECCCCCHHHHHHHHHHHHCcChHHEEEEECCEECCCCCCHHHcCCCCCCEEEEEE
Confidence 468899997 568899999999999999999999999999999999999999999999999999999999985
No 31
>1uh6_A Ubiquitin-like 5; beta-grAsp fold, structural genomics, riken structural genomics/proteomics initiative, RSGI, unknown function; NMR {Mus musculus} SCOP: d.15.1.1
Probab=99.60 E-value=1.3e-15 Score=125.76 Aligned_cols=74 Identities=22% Similarity=0.184 Sum_probs=69.4
Q ss_pred CCCCeeEEEEEeC-CEEEEEEEcCCCCHHHHHHHHhcccCCCccCcEEeccCcccCCchhhhhcCCCCCCEEEEe
Q 018493 51 APPPTIRVRVKYG-SIYHEIHINSQATFGELKKLLTGPTGLHHEDQKLIYKDKERDSKAFLDVVGVKDKSKLVLV 124 (355)
Q Consensus 51 ~~~~~I~V~VK~g-g~~~~V~V~~~sTVgdLK~~I~e~TGVppe~QKLIykGK~ldD~~tLs~~GIKdgSkImLv 124 (355)
...++|.|+||.. |+++.|+|++++||++||++|++..|+|+++|+|+|.||.|+|+.+|++|||++|++|+|.
T Consensus 24 ~~~~mm~I~VKtl~Gk~i~lev~p~dTV~~lK~~Ia~k~Gip~~qQrLi~~Gk~L~D~~TL~dygI~~gstlhL~ 98 (100)
T 1uh6_A 24 GAATMIEVVCNDRLGKKVRVKCNTDDTIGDLKKLIAAQTGTRWNKIVLKKWYTIFKDHVSLGDYEIHDGMNLELY 98 (100)
T ss_dssp SCCCEEEEEEECSSSSCEEEEEETTSBHHHHHHHHHHHHCCCGGGCEEEETTEECCSSCBHHHHTCCTTEEEEEE
T ss_pred CCCCeEEEEEECCCCCEEEEEeCCCCcHHHHHHHHHHHhCCCHHHEEEEECCEECCCCCCHHHcCCCCCCEEEEE
Confidence 3456799999974 7889999999999999999999999999999999999999999999999999999999986
No 32
>1wx8_A Riken cDNA 4931431F19; ubiquitin-like domain, ubiquilin 1-like, structural genomics, riken structural genomics/proteomics initiative, RSGI; NMR {Mus musculus} SCOP: d.15.1.1
Probab=99.59 E-value=1.3e-15 Score=121.77 Aligned_cols=75 Identities=23% Similarity=0.263 Sum_probs=70.7
Q ss_pred CCCeeEEEEEeCCEEEEEEEcCCCCHHHHHHHHhcccCCCccCcEEeccCcccCCchhhhhcCCCCCCEEEEeec
Q 018493 52 PPPTIRVRVKYGSIYHEIHINSQATFGELKKLLTGPTGLHHEDQKLIYKDKERDSKAFLDVVGVKDKSKLVLVED 126 (355)
Q Consensus 52 ~~~~I~V~VK~gg~~~~V~V~~~sTVgdLK~~I~e~TGVppe~QKLIykGK~ldD~~tLs~~GIKdgSkImLv~~ 126 (355)
+..+|.|+|++.+..+.++|++++||.+||++|++.+|+|+++|+|+|+|+.++|+.+|.+|||++|++|+|+..
T Consensus 14 ~~~~m~i~Vk~~g~~~~~~v~~~~TV~~LK~~I~~~~gip~~~qrL~~~Gk~L~D~~tL~~~gi~~g~~i~l~~~ 88 (96)
T 1wx8_A 14 SSRIIRVSVKTPQDCHEFFLAENSNVRRFKKQISKYLHCNADRLVLIFTGKILRDQDILSQRGILDGSTVHVVVR 88 (96)
T ss_dssp CSCEEEEEEECSSSEEEEEEETTCCHHHHHHHHHHHTCSCTTTBCCEETTEECCTTSCHHHHTCCTTEEEECCBC
T ss_pred CCCcEEEEEEECCeEEEEEECCCCCHHHHHHHHHHHhCCCHHHEEEEECCEECCCcCCHHHCCCCCCCEEEEEEe
Confidence 456799999998888999999999999999999999999999999999999999999999999999999999864
No 33
>2hj8_A Interferon-induced 17 kDa protein; HR2873B, human ISG15, structure, northeast structural genomics consortium, protein structure initiative, NESG; NMR {Homo sapiens}
Probab=99.59 E-value=2.4e-15 Score=119.05 Aligned_cols=73 Identities=16% Similarity=0.210 Sum_probs=68.5
Q ss_pred CeeEEEEEe-CCEEEEEEEcCCCCHHHHHHHHhcccCCCccCcEEeccCcccCCchhhhhcCCCCCCEEEEeec
Q 018493 54 PTIRVRVKY-GSIYHEIHINSQATFGELKKLLTGPTGLHHEDQKLIYKDKERDSKAFLDVVGVKDKSKLVLVED 126 (355)
Q Consensus 54 ~~I~V~VK~-gg~~~~V~V~~~sTVgdLK~~I~e~TGVppe~QKLIykGK~ldD~~tLs~~GIKdgSkImLv~~ 126 (355)
.+|.|+|++ .|..+.++|++++||++||++|++.+|+|+++|+|+|+|+.++|+.+|++|||++|++|+|+..
T Consensus 3 ~~m~I~Vk~~~g~~~~~~v~~~~TV~~LK~~I~~~~gip~~~qrL~~~Gk~L~D~~tL~~~~I~~g~~i~l~~~ 76 (88)
T 2hj8_A 3 EPLSILVRNNKGRSSTYEVRLTQTVAHLKQQVSGLEGVQDDLFWLTFEGKPLEDQLPLGEYGLKPLSTVFMNLR 76 (88)
T ss_dssp CEEEEEEEETTSCEEEEEEESSSBHHHHHHHHHHHTCSCTTTEEEESSSSCCCTTSBHHHHHCSTTCEEEEEEC
T ss_pred ccEEEEEECCCCCEEEEEECCCCcHHHHHHHHHHHhCCChhHEEEEECCEECCCCCcHHHcCCCCCCEEEEEEE
Confidence 468899997 4688899999999999999999999999999999999999999999999999999999999874
No 34
>2kan_A Uncharacterized protein AR3433A; ubiquitin fold, alpha+beta, structural genomics, protein structure initiative; NMR {Arabidopsis thaliana}
Probab=99.59 E-value=2.3e-15 Score=121.51 Aligned_cols=76 Identities=21% Similarity=0.248 Sum_probs=70.2
Q ss_pred CCCCeeEEEEEeCCEEEEEEEcCCCCHHHHHHHHhcccCCCccCcEEeccCcccCCc-hhhhhcCCCCCCEEEEeec
Q 018493 51 APPPTIRVRVKYGSIYHEIHINSQATFGELKKLLTGPTGLHHEDQKLIYKDKERDSK-AFLDVVGVKDKSKLVLVED 126 (355)
Q Consensus 51 ~~~~~I~V~VK~gg~~~~V~V~~~sTVgdLK~~I~e~TGVppe~QKLIykGK~ldD~-~tLs~~GIKdgSkImLv~~ 126 (355)
.....|.|.|++.+.++.|+|++++||++||++|++.+|+|+++|+|+|+||.|+|+ .+|++|||++|++|+|+..
T Consensus 11 ~~~~~~~I~Vk~~~~~~~l~v~~~~TV~~LK~~I~~~~gip~~~QrLi~~Gk~L~D~~~tL~~ygI~~gstl~lv~r 87 (94)
T 2kan_A 11 AAVRKIHVTVKFPSKQFTVEVDRTETVSSLKDKIHIVENTPIKRMQLYYSGIELADDYRNLNEYGITEFSEIVVFLK 87 (94)
T ss_dssp SSSCCEEEEEECSSCEEEEEECTTCBHHHHHHHHHHHSSSCTTTEEEEETTEEECCTTSBHHHHTCCTTEEEEEEEC
T ss_pred cCCCCEEEEEEcCCcEEEEEECCCCcHHHHHHHHHHHHCcCHHHEEEEECCEECCCCcccHHHCCCCCCCEEEEEEe
Confidence 345679999998655899999999999999999999999999999999999999999 9999999999999999864
No 35
>2klc_A Ubiquilin-1; ubiquitin-like, structural genomics, PSI-2, protein structur initiative, northeast structural genomics consortium, NESG; NMR {Homo sapiens}
Probab=99.59 E-value=2.6e-15 Score=122.45 Aligned_cols=75 Identities=19% Similarity=0.224 Sum_probs=69.8
Q ss_pred CeeEEEEEeCCEEEEEEEcCCCCHHHHHHHHhcccCCCccCcEEeccCcccCCchhhhhcCCCCCCEEEEeecCC
Q 018493 54 PTIRVRVKYGSIYHEIHINSQATFGELKKLLTGPTGLHHEDQKLIYKDKERDSKAFLDVVGVKDKSKLVLVEDPI 128 (355)
Q Consensus 54 ~~I~V~VK~gg~~~~V~V~~~sTVgdLK~~I~e~TGVppe~QKLIykGK~ldD~~tLs~~GIKdgSkImLv~~p~ 128 (355)
..|.|+|++.+..+.++|++++||++||++|++.+|+|+++|+|+|+|+.++|+.+|++|||++|++|+|+....
T Consensus 24 ~~m~I~Vk~~g~~~~l~v~~~~TV~~LK~~I~~~~gip~~~qrLi~~Gk~L~D~~tL~~~gI~~g~~I~l~~~~~ 98 (101)
T 2klc_A 24 KIMKVTVKTPKEKEEFAVPENSSVQQFKEEISKRFKSHTDQLVLIFAGKILKDQDTLSQHGIHDGLTVHLVIKTQ 98 (101)
T ss_dssp CCEEEEEECSSCEEEEEECSCCCHHHHHHHHHHHHTCCGGGEEEEETTEEECTTCCTGGGTCCTTCEEEEEECCS
T ss_pred CeEEEEEEeCCcEEEEEECCCCCHHHHHHHHHHHHCcChhhEEEEECCEECCCcCcHHHcCCCCCCEEEEEEcCC
Confidence 468889998778899999999999999999999999999999999999999999999999999999999997543
No 36
>4fbj_B NEDD8; effector-HOST target complex, glutamine deamidase, deamidati bacterial effector, cell cycle-protein binding complex; 1.60A {Homo sapiens} PDB: 4f8c_B
Probab=99.59 E-value=1.6e-15 Score=120.28 Aligned_cols=70 Identities=23% Similarity=0.275 Sum_probs=65.8
Q ss_pred eEEEEEe-CCEEEEEEEcCCCCHHHHHHHHhcccCCCccCcEEeccCcccCCchhhhhcCCCCCCEEEEee
Q 018493 56 IRVRVKY-GSIYHEIHINSQATFGELKKLLTGPTGLHHEDQKLIYKDKERDSKAFLDVVGVKDKSKLVLVE 125 (355)
Q Consensus 56 I~V~VK~-gg~~~~V~V~~~sTVgdLK~~I~e~TGVppe~QKLIykGK~ldD~~tLs~~GIKdgSkImLv~ 125 (355)
+.|+|+. .+..+.|+|++++||.+||++|++.+|+|+++|||+|+|+.++|+.+|++|||++|++|+|+.
T Consensus 1 M~I~Vk~~~g~~~~l~v~~~~TV~~LK~~I~~~~gip~~~qrLi~~Gk~L~D~~tL~~~~i~~g~~l~l~~ 71 (88)
T 4fbj_B 1 MLIKVKTLTGKEIEIDIEPTDKVERIKERVEEKEGIPPQQQRLIYSGKQMNDEKTAADYKILGGSVLHLVL 71 (88)
T ss_dssp CEEEEEETTCCEEEEECCTTCBHHHHHHHHHHHHCCCGGGCEEEETTEECCTTSBTTTTTCCTTCEEEEEC
T ss_pred CEEEEEcCCCCEEEEEECCCCCHHHHHHHHHHHHCcChhHEEEEECCeECCCCCcHHHcCCCCCCEEEEEE
Confidence 4678885 678899999999999999999999999999999999999999999999999999999999985
No 37
>1yqb_A Ubiquilin 3; structural genomics consortium, ubiquitin, ubiquitin-like domain, structural genomics, signaling protein SGC; 2.00A {Homo sapiens} SCOP: d.15.1.1
Probab=99.59 E-value=3.4e-15 Score=121.75 Aligned_cols=77 Identities=23% Similarity=0.277 Sum_probs=70.4
Q ss_pred CCCCeeEEEEEeCCEEEEEEEcCCCCHHHHHHHHhcccCCCccCcEEeccCcccCCchhhhhcCCCCCCEEEEeecC
Q 018493 51 APPPTIRVRVKYGSIYHEIHINSQATFGELKKLLTGPTGLHHEDQKLIYKDKERDSKAFLDVVGVKDKSKLVLVEDP 127 (355)
Q Consensus 51 ~~~~~I~V~VK~gg~~~~V~V~~~sTVgdLK~~I~e~TGVppe~QKLIykGK~ldD~~tLs~~GIKdgSkImLv~~p 127 (355)
....+|.|+|++.+..+.++|++++||++||++|++.+|+|+++|+|+|+|+.++|+.+|++|||++|++|+|+...
T Consensus 18 ~~~~~m~I~Vk~~~g~~~l~v~~~~TV~~LK~~I~~~~gip~~~QrLi~~Gk~L~D~~tL~~ygI~~gstI~l~~r~ 94 (100)
T 1yqb_A 18 GSPHLIKVTVKTPKDKEDFSVTDTCTIQQLKEEISQRFKAHPDQLVLIFAGKILKDPDSLAQCGVRDGLTVHLVIKR 94 (100)
T ss_dssp CCTTEEEEEEECSSCEEEEEEETTCBHHHHHHHHHHHHTCCGGGEEEEETTEECCTTSBHHHHTCCTTCEEEEEECC
T ss_pred CCCCeEEEEEEcCCCcEEEEECCCCcHHHHHHHHHHHHCcChhhEEEEECCEECCCcCcHHHCCCCCCCEEEEEEcC
Confidence 44567999999865458999999999999999999999999999999999999999999999999999999998653
No 38
>2faz_A Ubiquitin-like containing PHD and ring finger DOM protein 1; cell cycle, DNA damage, DNA repair, DNA-binding, ligase, Met binding, nuclear protein; 2.00A {Homo sapiens} SCOP: d.15.1.1
Probab=99.59 E-value=3.7e-15 Score=114.21 Aligned_cols=72 Identities=15% Similarity=0.227 Sum_probs=65.2
Q ss_pred eeEEEEEe-CCEE-EEEE-EcCCCCHHHHHHHHhcccCCCccCcEEeccCcccCCchhhhhcCCCCCCEEEEeec
Q 018493 55 TIRVRVKY-GSIY-HEIH-INSQATFGELKKLLTGPTGLHHEDQKLIYKDKERDSKAFLDVVGVKDKSKLVLVED 126 (355)
Q Consensus 55 ~I~V~VK~-gg~~-~~V~-V~~~sTVgdLK~~I~e~TGVppe~QKLIykGK~ldD~~tLs~~GIKdgSkImLv~~ 126 (355)
.+.|.|++ .|+. +.++ |++++||++||++|++.+|+|+++|+|+|+|+.++|+.+|++|||++|++|+|+..
T Consensus 2 ~m~i~Vk~~~g~~~~~l~~v~~~~tv~~lK~~i~~~~gip~~~qrL~~~g~~L~d~~tL~~~~i~~g~~i~l~~r 76 (78)
T 2faz_A 2 SMWIQVRTMDGRQTHTVDSLSRLTKVEELRRKIQELFHVEPGLQRLFYRGKQMEDGHTLFDYEVRLNDTIQLLVR 76 (78)
T ss_dssp CEEEEEEETTSSCEEEEEEECTTCBHHHHHHHHHHHHCCCGGGEEEEETTEECCTTCBTTTTTCCTTCEEEEEEC
T ss_pred cEEEEEEECCCCEEEEEeccCCCCCHHHHHHHHHHHHCcChhhEEEEECCEECCCCCCHHHcCCCCCCEEEEEEe
Confidence 46778886 3444 6899 99999999999999999999999999999999999999999999999999999864
No 39
>4hcn_B Polyubiquitin, ubiquitin; ubiquitin/NEDD8 deamidase, NEDD8, protein binding; 2.60A {Saccharomyces cerevisiae}
Probab=99.59 E-value=1.5e-15 Score=122.61 Aligned_cols=75 Identities=20% Similarity=0.281 Sum_probs=67.9
Q ss_pred CCCCeeEEEEEe-CCEEEEEEEcCCCCHHHHHHHHhcccCCCccCcEEeccCcccCCchhhhhcCCCCCCEEEEee
Q 018493 51 APPPTIRVRVKY-GSIYHEIHINSQATFGELKKLLTGPTGLHHEDQKLIYKDKERDSKAFLDVVGVKDKSKLVLVE 125 (355)
Q Consensus 51 ~~~~~I~V~VK~-gg~~~~V~V~~~sTVgdLK~~I~e~TGVppe~QKLIykGK~ldD~~tLs~~GIKdgSkImLv~ 125 (355)
..+..|.|+|+. .+..+.|+|++++||.+||++|++.+|+|+++|||+|+|+.++|+.+|.+|||++|++|+|+.
T Consensus 18 ~~~~~m~I~Vk~~~g~~~~l~v~~~~TV~~LK~~I~~~~gip~~~qrLi~~Gk~L~D~~tL~~~~i~~g~~i~l~~ 93 (98)
T 4hcn_B 18 FQGRPMQIFVKTLTGKTITLEVESSDTIDNVKSKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYNIQKESTLHLVL 93 (98)
T ss_dssp ----CCEEEEEETTCCEEEEECCTTCBHHHHHHHHHHHHCCCGGGCEEEETTEECCTTCBSGGGTCCTTEEEEEEC
T ss_pred CCCCeEEEEEEeCCCCEEEEEECCCCcHHHHHHHHHHHhCCChhHEEEEECCEECCCCCcHHHCCCCCCCEEEEEE
Confidence 345569999995 678899999999999999999999999999999999999999999999999999999999985
No 40
>2l7r_A Ubiquitin-like protein FUBI; structural genomics, PSI-biology, protein structure initiati northeast structural genomics consortium, NESG; NMR {Homo sapiens}
Probab=99.59 E-value=1.6e-15 Score=121.64 Aligned_cols=75 Identities=20% Similarity=0.322 Sum_probs=66.9
Q ss_pred CCCCeeEEEEEeCCEEEEEEEcCCCCHHHHHHHHhcccCCCccCcEEeccCcccCCchhhhhcCCCCCCEEEEeec
Q 018493 51 APPPTIRVRVKYGSIYHEIHINSQATFGELKKLLTGPTGLHHEDQKLIYKDKERDSKAFLDVVGVKDKSKLVLVED 126 (355)
Q Consensus 51 ~~~~~I~V~VK~gg~~~~V~V~~~sTVgdLK~~I~e~TGVppe~QKLIykGK~ldD~~tLs~~GIKdgSkImLv~~ 126 (355)
.....|.|+|++ +..+.++|++++||.+||++|++.+|+|+++|+|+|+|+.++|+.+|.+|||++|++|+|+..
T Consensus 15 ~~~~~m~I~Vk~-g~~~~l~v~~~~TV~~LK~~I~~~~gip~~~qrLi~~Gk~L~D~~tL~~y~I~~gstI~lv~r 89 (93)
T 2l7r_A 15 VPRGSMQLFVRA-QELHTFEVTGQETVAQIKAHVASLEGIAPEDQVVLLAGAPLEDEATLGQCGVEALTTLEVAGR 89 (93)
T ss_dssp -----CEEEEES-SSEEEEECCSSCBHHHHHHHHHHHHTCCGGGCEEEETTEECCTTSBHHHHTCCSSCEEEEECC
T ss_pred CCCCcEEEEEEC-CCEEEEEeCCCCcHHHHHHHHHHHhCcChhHEEEEECCEECCCCCcHHHCCCCCCCEEEEEEe
Confidence 345678999999 688999999999999999999999999999999999999999999999999999999999853
No 41
>2dzm_A FAS-associated factor 1; ubiquitin-like domain, HFAF1, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.59 E-value=2.2e-15 Score=124.14 Aligned_cols=75 Identities=16% Similarity=0.271 Sum_probs=68.3
Q ss_pred CCCCeeEEEEEeCCEEEEEEEcCCCCHHHHHHHHhcccCCCccCcEEec-cCcccCCchhhhhcCCCCCCEEEEee
Q 018493 51 APPPTIRVRVKYGSIYHEIHINSQATFGELKKLLTGPTGLHHEDQKLIY-KDKERDSKAFLDVVGVKDKSKLVLVE 125 (355)
Q Consensus 51 ~~~~~I~V~VK~gg~~~~V~V~~~sTVgdLK~~I~e~TGVppe~QKLIy-kGK~ldD~~tLs~~GIKdgSkImLv~ 125 (355)
.+..++.++|+|+++.|.|+|++++||++||++|+++|||||++|||+| +|+.++|+.+|++|||++|++|||+-
T Consensus 5 ~~~~m~~~~vk~~Gk~~~v~v~~~~TV~~LK~~I~~~tgIpp~~QkLi~~~~gkL~D~~tLs~~~I~~gstL~lvl 80 (100)
T 2dzm_A 5 SSGRMLDFRVEYRDRNVDVVLEDTCTVGEIKQILENELQIPVSKMLLKGWKTGDVEDSTVLKSLHLPKNNSLYVLT 80 (100)
T ss_dssp CCCCEEEEEEECSSCEEEEEEETTSBHHHHHHHHHHHHCCCTTTCCEECCSSSCCCTTSBHHHHCCCSEEEEEECC
T ss_pred CCcceEEEEEEeCCeEEEEEECCCCcHHHHHHHHHHHHCCChhHeEEEccCCCCCCCcCCHHHcCCCCCCEEEEEe
Confidence 3456899999999999999999999999999999999999999999996 44448999999999999999999974
No 42
>3n3k_B Ubiquitin; hydrolase, protease, thiol protease, DUB, zinc ribbon, inhibitor, ubiqu acetylation, cytoplasm, isopeptide bond, nucleus; 2.60A {Homo sapiens} SCOP: d.15.1.1
Probab=99.59 E-value=1.7e-15 Score=117.23 Aligned_cols=72 Identities=19% Similarity=0.292 Sum_probs=66.5
Q ss_pred CeeEEEEEe-CCEEEEEEEcCCCCHHHHHHHHhcccCCCccCcEEeccCcccCCchhhhhcCCCCCCEEEEee
Q 018493 54 PTIRVRVKY-GSIYHEIHINSQATFGELKKLLTGPTGLHHEDQKLIYKDKERDSKAFLDVVGVKDKSKLVLVE 125 (355)
Q Consensus 54 ~~I~V~VK~-gg~~~~V~V~~~sTVgdLK~~I~e~TGVppe~QKLIykGK~ldD~~tLs~~GIKdgSkImLv~ 125 (355)
.+|.|+|++ .+..+.++|++++||.+||++|++.+|+|+++|+|+|+|+.++|+.+|++|||++|++|+|+.
T Consensus 2 s~m~i~vk~~~g~~~~~~v~~~~tV~~lK~~i~~~~~ip~~~qrL~~~g~~L~d~~tL~~~~i~~~~~i~l~~ 74 (85)
T 3n3k_B 2 SHMRIVVKTLMGRTIILEVEPSDTIENVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYNIHNHSALYLLL 74 (85)
T ss_dssp --CEEEEECGGGCEEEEECCTTCBHHHHHHHHHHHHCCCGGGEEEEETBEECCTTCBTTTTTCCTTCEEEEEE
T ss_pred CeEEEEEEeCCCCEEEEEECCCCcHHHHHHHHHHHHCCCHHHEEEEECCeECCCCCCHHHCCCCCCCEEEEEE
Confidence 467889996 568899999999999999999999999999999999999999999999999999999999985
No 43
>3m63_B Ubiquitin domain-containing protein DSK2; armadillo-like repeats, UBL conjugation pathway, nucleus, phosphoprotein; HET: 1PE; 2.40A {Saccharomyces cerevisiae}
Probab=99.58 E-value=4.1e-16 Score=127.52 Aligned_cols=72 Identities=19% Similarity=0.372 Sum_probs=68.2
Q ss_pred eeEEEEEeCCEEEEEEEcCCCCHHHHHHHHhcccCCCccCcEEeccCcccCCchhhhhcCCCCCCEEEEeec
Q 018493 55 TIRVRVKYGSIYHEIHINSQATFGELKKLLTGPTGLHHEDQKLIYKDKERDSKAFLDVVGVKDKSKLVLVED 126 (355)
Q Consensus 55 ~I~V~VK~gg~~~~V~V~~~sTVgdLK~~I~e~TGVppe~QKLIykGK~ldD~~tLs~~GIKdgSkImLv~~ 126 (355)
.|+|+|++++..+.|+|++++||++||++|++.+|+|+++|||+|+|+.++|+.+|++|||++|++|+|+.+
T Consensus 28 ~i~I~Vk~~g~~~~l~v~~~~TV~~LK~~I~~~~gip~~~QrLi~~Gk~L~D~~tL~~~gI~~g~tI~lv~~ 99 (101)
T 3m63_B 28 SLNIHIKSGQDKWEVNVAPESTVLQFKEAINKANGIPVANQRLIYSGKILKDDQTVESYHIQDGHSVHLVKS 99 (101)
T ss_dssp -CCEEEECSSCCCCBCCCTTSBHHHHHHHHHHHHSCCSTTCCEEETTEECCTTSBTTTTTCCTTEEEEECCC
T ss_pred EEEEEEEECCEEEEEEeCCCCCHHHHHHHHHHHHCcChHHEEEEECCEECCCcCcHHHCCCCCCCEEEEEeC
Confidence 478899998889999999999999999999999999999999999999999999999999999999999874
No 44
>1x1m_A Ubiquitin-like protein SB132; structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Mus musculus} SCOP: d.15.1.1
Probab=99.58 E-value=2.9e-15 Score=123.22 Aligned_cols=80 Identities=16% Similarity=0.258 Sum_probs=71.0
Q ss_pred CCCCCCeeEEEEEeCCE----EEEEEEcC---------CCCHHHHHHHHhccc--CCCccC-cEEeccCcccCCchhhhh
Q 018493 49 TSAPPPTIRVRVKYGSI----YHEIHINS---------QATFGELKKLLTGPT--GLHHED-QKLIYKDKERDSKAFLDV 112 (355)
Q Consensus 49 ~~~~~~~I~V~VK~gg~----~~~V~V~~---------~sTVgdLK~~I~e~T--GVppe~-QKLIykGK~ldD~~tLs~ 112 (355)
.++....|.|+||+.+. .|.|+|++ ++||++||++|++.+ |+|+++ |||||+||.|+|+.+|++
T Consensus 6 ~~~~~~~~~i~Vk~~~~~~~~~~~l~v~~~~~~~v~~~~~TV~~LK~~i~~~~~~gip~~~~qrLi~~Gk~L~D~~tL~~ 85 (107)
T 1x1m_A 6 SGMSLSDWHLAVKLADQPLAPKSILQLPETELGEYSLGGYSISFLKQLIAGKLQESVPDPELIDLIYCGRKLKDDQTLDF 85 (107)
T ss_dssp CCCCCCSCCEEEEETTCTTSCCEEECCCCCSSCSSCCCCCBHHHHHHHHHHHCTTTCCCSSSEEEEETTEECCTTCBHHH
T ss_pred CCccCCceEEEEEeCCCCCccEEEEEecCccccccCcccCCHHHHHHHHHHHhccCCChhhcEEEEECCeECCCCCcHHH
Confidence 35667779999998544 88999665 599999999999999 999999 999999999999999999
Q ss_pred cCCCCCCEEEEeecCC
Q 018493 113 VGVKDKSKLVLVEDPI 128 (355)
Q Consensus 113 ~GIKdgSkImLv~~p~ 128 (355)
|||++|++|+|+....
T Consensus 86 y~i~~g~~i~lv~~~~ 101 (107)
T 1x1m_A 86 YGIQPGSTVHVLRKSW 101 (107)
T ss_dssp HTCCTTCEEEEEESSC
T ss_pred cCCCCCCEEEEEeCCC
Confidence 9999999999997543
No 45
>3a9j_A Ubiquitin; protein complex, cytoplasm, isopeptide bond, metal-binding, zinc; 1.18A {Mus musculus} PDB: 3a1q_B 2znv_B 3a9k_A 3h7p_A 3jsv_A 3dvg_Y 3dvn_Y 3nob_A 2o6v_D* 3jw0_X 3jvz_X 3nhe_B* 1aar_A 1d3z_A 1f9j_A 1fxt_B 1g6j_A 1nbf_C 1cmx_B 1q5w_B ...
Probab=99.58 E-value=3.2e-15 Score=112.70 Aligned_cols=71 Identities=20% Similarity=0.299 Sum_probs=66.0
Q ss_pred eEEEEEe-CCEEEEEEEcCCCCHHHHHHHHhcccCCCccCcEEeccCcccCCchhhhhcCCCCCCEEEEeec
Q 018493 56 IRVRVKY-GSIYHEIHINSQATFGELKKLLTGPTGLHHEDQKLIYKDKERDSKAFLDVVGVKDKSKLVLVED 126 (355)
Q Consensus 56 I~V~VK~-gg~~~~V~V~~~sTVgdLK~~I~e~TGVppe~QKLIykGK~ldD~~tLs~~GIKdgSkImLv~~ 126 (355)
+.|+|++ ++..+.++|++++||++||++|++.+|+|+++|+|+|+|+.++|+.+|++|||++|++|+|+..
T Consensus 1 M~i~vk~~~g~~~~i~v~~~~tv~~lK~~i~~~~~i~~~~q~L~~~g~~L~d~~tL~~~~i~~g~~i~l~~~ 72 (76)
T 3a9j_A 1 MQIFVKTLTGKTITLEVEPSDTIENVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYNIQRESTLHLVLR 72 (76)
T ss_dssp CEEEEEETTSCEEEEECCTTCBHHHHHHHHHHHHCCCGGGEEEEETTEECCTTCBTGGGTCCTTCEEEEEEC
T ss_pred CEEEEEcCCCCEEEEEECCCCcHHHHHHHHHHHHCcCHHHeEEEECCeECCCCCcHHHcCCCCCCEEEEEEe
Confidence 4678887 5678999999999999999999999999999999999999999999999999999999999864
No 46
>1ttn_A DC-UBP, dendritic cell-derived ubiquitin-like protein; ubiquitin-like domain, solution structure, signaling protein; NMR {Homo sapiens} SCOP: d.15.1.1
Probab=99.58 E-value=4.9e-15 Score=121.52 Aligned_cols=74 Identities=11% Similarity=0.184 Sum_probs=69.8
Q ss_pred CCeeEEEEEe-CCEEEEEEEcCCCCHHHHHHHHhcccCCCccCcEEeccCcccCCchhhhhcCCCCCCEEEEeec
Q 018493 53 PPTIRVRVKY-GSIYHEIHINSQATFGELKKLLTGPTGLHHEDQKLIYKDKERDSKAFLDVVGVKDKSKLVLVED 126 (355)
Q Consensus 53 ~~~I~V~VK~-gg~~~~V~V~~~sTVgdLK~~I~e~TGVppe~QKLIykGK~ldD~~tLs~~GIKdgSkImLv~~ 126 (355)
...|.|+|++ +|..+.++|++++||++||.+|+..+|+|+++|||+|+|+.++|+.+|.+|||++|++|+|+..
T Consensus 21 ~~~m~I~Vk~~~g~~~~l~v~~~~TV~~LK~~I~~~~gip~~~qrLi~~Gk~L~D~~tL~~ygI~~g~ti~lv~~ 95 (106)
T 1ttn_A 21 GYECQLRLRLSTGKDLKLVVRSTDTVFHMKRRLHAAEGVEPGSQRWFFSGRPLTDKMKFEELKIPKDYVVQVIVS 95 (106)
T ss_dssp CCSEEEEEEETTTEEEEEEECTTSHHHHHHHHHHHTTCCCSTTCEEEETTEECCTTSHHHHCCCSSSCEEEEECC
T ss_pred CCeEEEEEEcCCCCEEEEEeCCCCcHHHHHHHHHHHHCcCcccEEEEECCEECCCCCcHHHcCCCCCCEEEEEEe
Confidence 4469999997 6789999999999999999999999999999999999999999999999999999999999975
No 47
>1wy8_A NP95-like ring finger protein, isoform A; ubiquitin-like domain, NP95/ICBP90-like ring finger (NIRF), ubiquitin ligase, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.15.1.1
Probab=99.58 E-value=6.2e-15 Score=115.80 Aligned_cols=74 Identities=19% Similarity=0.202 Sum_probs=68.1
Q ss_pred CCeeEEEEEe-CC-EEEEE-EEcCCCCHHHHHHHHhcccCCCccCcEEeccCcccCCchhhhhcCCCCCCEEEEeec
Q 018493 53 PPTIRVRVKY-GS-IYHEI-HINSQATFGELKKLLTGPTGLHHEDQKLIYKDKERDSKAFLDVVGVKDKSKLVLVED 126 (355)
Q Consensus 53 ~~~I~V~VK~-gg-~~~~V-~V~~~sTVgdLK~~I~e~TGVppe~QKLIykGK~ldD~~tLs~~GIKdgSkImLv~~ 126 (355)
..+|.|+|++ .+ ..+.| +|++++||.+||++|++.+|+|+++|+|+|+|+.++|+.+|.+|||++|++|+|+..
T Consensus 5 ~~~m~i~Vk~~~g~~~~~l~~v~~~~tV~~lK~~i~~~~gip~~~qrL~~~gk~L~d~~tL~~~~i~~g~~i~l~~~ 81 (89)
T 1wy8_A 5 SSGMWIQVRTIDGSKTCTIEDVSRKATIEELRERVWALFDVRPECQRLFYRGKQLENGYTLFDYDVGLNDIIQLLVR 81 (89)
T ss_dssp SSCEEEEEEETTCSCEEEEEEECTTCBHHHHHHHHHHHSCCCTTTEEEEETTEECCSSSBHHHHTCCTTCEEEEEEC
T ss_pred CCcEEEEEEECCCCceEEEEecCCCCCHHHHHHHHHHHHCcChhhEEEEECCeECCCCCCHHHCCCCCCCEEEEEEe
Confidence 4678999997 35 68999 599999999999999999999999999999999999999999999999999999854
No 48
>1uel_A HHR23B, UV excision repair protein RAD23 homolog B; UBL, UIM, riken structural genomics/proteomics initiative, RSGI, structural genomics; NMR {Homo sapiens} SCOP: d.15.1.1
Probab=99.58 E-value=4.6e-15 Score=119.15 Aligned_cols=71 Identities=23% Similarity=0.306 Sum_probs=66.2
Q ss_pred eEEEEEe-CCEEEEEEEcCCCCHHHHHHHHhcc---cCCCccCcEEeccCcccCCchhhhhcCCCCCCEEEEeec
Q 018493 56 IRVRVKY-GSIYHEIHINSQATFGELKKLLTGP---TGLHHEDQKLIYKDKERDSKAFLDVVGVKDKSKLVLVED 126 (355)
Q Consensus 56 I~V~VK~-gg~~~~V~V~~~sTVgdLK~~I~e~---TGVppe~QKLIykGK~ldD~~tLs~~GIKdgSkImLv~~ 126 (355)
+.|+|++ .+..+.++|++++||++||++|++. +|+|+++|+|+|+|+.++|+.+|++|||++|++|+|+..
T Consensus 1 M~I~Vk~~~g~~~~~~v~~~~TV~~LK~~I~~~~~~~gip~~~qrLi~~Gk~L~D~~tL~~ygI~~g~~i~l~~~ 75 (95)
T 1uel_A 1 MQVTLKTLQQQTFKIDIDPEETVKALKEKIESEKGKDAFPVAGQKLIYAGKILNDDTALKEYKIDEKNFVVVMVT 75 (95)
T ss_dssp CEEEEEETTCCEEEEECCTTSBHHHHHHHHHHHHCTTTCCTTTEEEEETTEECCTTSBGGGGTCCSSSEEEEEES
T ss_pred CEEEEEeCCCCEEEEEECCCCHHHHHHHHHHhhcccCCCChhhEEEEECCEECCCcCcHHHCCCCCCCEEEEEEe
Confidence 4688887 4788999999999999999999999 899999999999999999999999999999999999864
No 49
>1v5o_A 1700011N24RIK protein; hypothetical protein, ubiquitin-like fold, structural genomics, riken structural genomics/proteomics initiative, RSGI; NMR {Mus musculus} SCOP: d.15.1.1
Probab=99.58 E-value=4.2e-15 Score=121.15 Aligned_cols=73 Identities=16% Similarity=0.335 Sum_probs=65.6
Q ss_pred CeeEEEEEe--CC---EEEEEEEcCCCCHHHHHHHHhcccCCCccCcEEeccCcccCCc-hhhhhcCCCCCCEEEEeec
Q 018493 54 PTIRVRVKY--GS---IYHEIHINSQATFGELKKLLTGPTGLHHEDQKLIYKDKERDSK-AFLDVVGVKDKSKLVLVED 126 (355)
Q Consensus 54 ~~I~V~VK~--gg---~~~~V~V~~~sTVgdLK~~I~e~TGVppe~QKLIykGK~ldD~-~tLs~~GIKdgSkImLv~~ 126 (355)
..|.|+|++ ++ +.|.|+|++++||++||++|++.+|||+++|+|+|+|+.|+|+ .+|.+|||++|++|+|+..
T Consensus 6 ~~m~I~Vk~~~~~~~~~~~~i~v~~~~TV~~LK~~I~~~~gip~~~qrL~~~gk~L~D~~~tL~~ygI~~g~~l~l~~~ 84 (102)
T 1v5o_A 6 SGMLITVYCVRRDLTEVTFSLQVNPDFELSNFRVLCELESGVPAEEAQIVYMEQLLTDDHCSLGSYGLKDGDMVVLLQK 84 (102)
T ss_dssp CCEEEEEEECCCCCCCCEEEEEECTTCBHHHHHHHHHHHTCCCGGGBCEEETTEEECCSSSBHHHHTCCTTEEEEECBC
T ss_pred CeEEEEEEECCCCcCceEEEEEcCCCCCHHHHHHHHHHHHCcChHHeEEEECCEECCCCcccHHHCCCCCCCEEEEEEC
Confidence 456666665 54 7899999999999999999999999999999999999998877 6999999999999999864
No 50
>1wgd_A Homocysteine-responsive endoplasmic reticulum- resident ubiquitin-like domain member...; ENDPLASMIC reticulum stress, UBL domain; NMR {Homo sapiens} SCOP: d.15.1.1
Probab=99.57 E-value=3e-15 Score=119.46 Aligned_cols=74 Identities=24% Similarity=0.196 Sum_probs=66.1
Q ss_pred CCeeEEEEEeC-CE--EEEEEEcCCCCHHHHHHHHhccc--CCCccCcEEeccCcccCCchhhhhc--CCCCCCEEEEee
Q 018493 53 PPTIRVRVKYG-SI--YHEIHINSQATFGELKKLLTGPT--GLHHEDQKLIYKDKERDSKAFLDVV--GVKDKSKLVLVE 125 (355)
Q Consensus 53 ~~~I~V~VK~g-g~--~~~V~V~~~sTVgdLK~~I~e~T--GVppe~QKLIykGK~ldD~~tLs~~--GIKdgSkImLv~ 125 (355)
...|.|+|++. +. .+.|++++++||++||++|++.+ |+|+++|||||+||.|+|+.+|++| ||++|++|+|+.
T Consensus 5 ~~~m~i~Vk~~~~~~~~~~v~v~~~~TV~~lK~~I~~~~~~~i~~~~QrLi~~Gk~L~D~~tL~~~~~~i~~~~~i~lv~ 84 (93)
T 1wgd_A 5 SSGVTLLVKSPNQRHRDLELSGDRGWSVGHLKAHLSRVYPERPRPEDQRLIYSGKLLLDHQCLRDLLPKQEKRHVLHLVC 84 (93)
T ss_dssp SCCCEEEEECSSSSCCCEEEECCTTSCHHHHHHHHHHHSTTCCCTTTCEEEETTEECCSSSCHHHHSCSSSCSEEEEEEC
T ss_pred CcEEEEEEEeCCCCeEEEEEecCCCCcHHHHHHHHHHHhcCCCChHHeEEEECCEECcCcCCHHHHhcCCCCCCEEEEEe
Confidence 45689999984 34 46677779999999999999999 9999999999999999999999999 999999999985
Q ss_pred c
Q 018493 126 D 126 (355)
Q Consensus 126 ~ 126 (355)
.
T Consensus 85 ~ 85 (93)
T 1wgd_A 85 N 85 (93)
T ss_dssp C
T ss_pred C
Confidence 3
No 51
>1wx7_A Ubiquilin 3; ubiquitin-like domain, structural genomics, riken structural genomics/proteomics initiative, RSGI, unknown function; NMR {Homo sapiens} SCOP: d.15.1.1
Probab=99.56 E-value=7e-15 Score=120.28 Aligned_cols=74 Identities=24% Similarity=0.289 Sum_probs=68.6
Q ss_pred CCeeEEEEEeCCEEEEEEEcCCCCHHHHHHHHhcccCCCccCcEEeccCcccCCchhhhhcCCCCCCEEEEeec
Q 018493 53 PPTIRVRVKYGSIYHEIHINSQATFGELKKLLTGPTGLHHEDQKLIYKDKERDSKAFLDVVGVKDKSKLVLVED 126 (355)
Q Consensus 53 ~~~I~V~VK~gg~~~~V~V~~~sTVgdLK~~I~e~TGVppe~QKLIykGK~ldD~~tLs~~GIKdgSkImLv~~ 126 (355)
..+|+|+|++.+..+.|+|++++||.+||++|++.+||++++|||+|+|+.|+|+.+|.+|||++|++|+|+..
T Consensus 15 ~~~m~I~Vk~~~g~~~l~v~~~~TV~~LK~~I~~~~gip~~~qrLi~~Gk~L~D~~tL~~~gi~~g~~i~l~~~ 88 (106)
T 1wx7_A 15 PHLIKVTVKTPKDKEDFSVTDTCTIQQLKEEISQRFKAHPDQLVLIFAGKILKDPDSLAQCGVRDGLTVHLVIK 88 (106)
T ss_dssp SSEEEEEEECSSCEEEEEEETTCCHHHHHHHHHHHHTCCTTTEEEEETTEECCTTSCHHHHTCCTTEEEEEEEC
T ss_pred CceEEEEEEeCCCcEEEEECCCCcHHHHHHHHHHHHCcChhhEEEEECCEECCCcCcHHHcCCCCCCEEEEEEc
Confidence 45699999986545899999999999999999999999999999999999999999999999999999999964
No 52
>3k9o_B Ubiquitin, UBB+1; E2-25K, complex structure, ATP-binding, isopeptide BO ligase, nucleotide-binding, UBL conjugation pathway; 1.80A {Homo sapiens} PDB: 2k25_A 2kx0_A
Probab=99.56 E-value=5.8e-15 Score=117.50 Aligned_cols=71 Identities=20% Similarity=0.303 Sum_probs=66.4
Q ss_pred eEEEEEe-CCEEEEEEEcCCCCHHHHHHHHhcccCCCccCcEEeccCcccCCchhhhhcCCCCCCEEEEeec
Q 018493 56 IRVRVKY-GSIYHEIHINSQATFGELKKLLTGPTGLHHEDQKLIYKDKERDSKAFLDVVGVKDKSKLVLVED 126 (355)
Q Consensus 56 I~V~VK~-gg~~~~V~V~~~sTVgdLK~~I~e~TGVppe~QKLIykGK~ldD~~tLs~~GIKdgSkImLv~~ 126 (355)
|.|+|++ .+..+.|+|++++||.+||++|++.+|+|+++|+|+|+|+.++|+.+|.+|||++|++|+|+..
T Consensus 2 m~i~vk~~~g~~~~~~v~~~~TV~~LK~~i~~~~gip~~~qrL~~~G~~L~d~~tL~~~~i~~~~~i~l~~r 73 (96)
T 3k9o_B 2 MQIFVKTLTGKTITLEVEPSDTIENVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYNIQKESTLHLVLR 73 (96)
T ss_dssp CEEEEEETTCCEEEEECCTTCBHHHHHHHHHHHHCCCGGGEEEEETTEECCTTSBTGGGTCCTTCEEEEEEC
T ss_pred cEEEEEeCCCCEEEEEECCCCCHHHHHHHHHhhhCCChhHEEEEECCEECCCCCcHHHcCCCCCCEEEEEEE
Confidence 5788886 5688999999999999999999999999999999999999999999999999999999999853
No 53
>1t7s_A BAG-1 cochaperone; structural genomics, PSI, protein structure initiative, southeast collaboratory for structural genomics, secsg; 2.80A {Caenorhabditis elegans} SCOP: a.7.7.1
Probab=99.53 E-value=2e-14 Score=124.09 Aligned_cols=107 Identities=21% Similarity=0.205 Sum_probs=87.7
Q ss_pred CEEEEeecCCchHHHHHHHhhhhhhhhhhhhHHHHHHHHHHhh-hhHHHHHH-------HHHhCCCcchhhHhhHHHHHH
Q 018493 119 SKLVLVEDPISQEKRLLEMRKNAKLEKASKSISEISLEVDRLA-GQVSALES-------IITKGGKVAEKDVLNLIELLM 190 (355)
Q Consensus 119 SkImLv~~p~s~E~~~~e~kk~k~ieka~~aIs~V~~eVDkLa-~ev~~LE~-------~I~~g~Kv~eke~~~LsE~LM 190 (355)
++|||+|++.++|++ .+.+....+++++. .+...++.+. .++..||+ ...+.+|+ ++++..++|.+|
T Consensus 1 ~KvMvlGkk~~~eed-~~lK~L~~~Ek~~~---~~~~kl~~~n~~el~~iekGFL~k~l~~ea~kkl-dKrik~~~E~~M 75 (137)
T 1t7s_A 1 DKIIVMGGKNALVDD-AGFKMLMQYEKHNL---SNLQKAYDLNLRDVADLERGFLEKPKQVEMGKKL-EKKVKYFNEEAE 75 (137)
T ss_dssp CCCEEECSSSEEECH-HHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHCCSCHHHHHHHHHHH-HHHHHHHHHHHH
T ss_pred CceeeeCCCCCcchh-HHHHHHHHHHHHHH---HHHHHHHHccHHHHHHHHHhhhccHhHHhHHHHH-HHHHHHHHHHHH
Confidence 589999999998888 67777777776544 4556777777 77888876 34455677 999999999999
Q ss_pred HHHHhccCCC--C-------ChhhHHHHHHHHHHHHHHHHHHHHhhhhc
Q 018493 191 NQLLKLDGIM--A-------DGDVKLQRKMQVRRVQKYVETLDMLKIKN 230 (355)
Q Consensus 191 q~LLKLD~Ie--a-------eGdaR~qRK~~VkrVQ~~Le~LD~lk~~n 230 (355)
+.|++|||+. . ..++|.+||.+|++||.+|.+||.+.++-
T Consensus 76 K~LE~LDsl~i~~~~t~~~q~~~~R~KRK~lV~~IQ~~L~~~D~l~~~i 124 (137)
T 1t7s_A 76 RHLETLDGMNIITETTPENQAKRNREKRKTLVNGIQTLLNQNDALLRRL 124 (137)
T ss_dssp HHHHHHHTEEECCCCCGGGSCHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHhhcccCCcccchhhHHHHHHHHHhhHHHHHHHHHHHhHHHHHHH
Confidence 9999999992 2 24899999999999999999999999873
No 54
>1yx5_B Ubiquitin; proteasome, UIM, hydrolase; NMR {Homo sapiens} SCOP: d.15.1.1 PDB: 1yx6_B
Probab=99.53 E-value=1.7e-14 Score=115.91 Aligned_cols=71 Identities=20% Similarity=0.303 Sum_probs=66.2
Q ss_pred eEEEEEe-CCEEEEEEEcCCCCHHHHHHHHhcccCCCccCcEEeccCcccCCchhhhhcCCCCCCEEEEeec
Q 018493 56 IRVRVKY-GSIYHEIHINSQATFGELKKLLTGPTGLHHEDQKLIYKDKERDSKAFLDVVGVKDKSKLVLVED 126 (355)
Q Consensus 56 I~V~VK~-gg~~~~V~V~~~sTVgdLK~~I~e~TGVppe~QKLIykGK~ldD~~tLs~~GIKdgSkImLv~~ 126 (355)
+.|+|++ ++..+.++|++++||++||++|++.+|+|+++|+|+|+|+.++|+.+|++|||++|++|+|+..
T Consensus 1 M~I~Vk~~~g~~~~~~v~~~~TV~~LK~~I~~~~gi~~~~qrL~~~Gk~L~D~~tL~~~gi~~g~~i~l~~~ 72 (98)
T 1yx5_B 1 MQIFVKTLTGKTITLEVEPSDTIENVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYNIQKESTLHLVLR 72 (98)
T ss_dssp CEEEEEETTSCEEEEECCTTCBHHHHHHHHHHHTCCCGGGEEEEETTEECCTTSBTGGGTCCTTCEEEEEEC
T ss_pred CEEEEEeCCCCEEEEEECCCCcHHHHHHHHHHHHCcChhhEEEEECCEECCCCCCHHHcCCCCCCEEEEEEe
Confidence 4678887 5678899999999999999999999999999999999999999999999999999999999864
No 55
>1sif_A Ubiquitin; hydrophobic mutants, folding, stability, structural protein; 2.18A {Homo sapiens} SCOP: d.15.1.1
Probab=99.53 E-value=1.4e-14 Score=114.72 Aligned_cols=71 Identities=20% Similarity=0.324 Sum_probs=65.1
Q ss_pred eEEEEE-eCCEEEEEEEcCCCCHHHHHHHHhcccCCCccCcEEeccCcccCCchhhhhcCCCCCCEEEEeec
Q 018493 56 IRVRVK-YGSIYHEIHINSQATFGELKKLLTGPTGLHHEDQKLIYKDKERDSKAFLDVVGVKDKSKLVLVED 126 (355)
Q Consensus 56 I~V~VK-~gg~~~~V~V~~~sTVgdLK~~I~e~TGVppe~QKLIykGK~ldD~~tLs~~GIKdgSkImLv~~ 126 (355)
+.|.|+ +.|+.+.++|++++||++||++|++.+|+|+++|||+|+|+.++|+.+|++|||++|++|+|+..
T Consensus 10 ~~i~v~~~~G~~~~l~v~~~~TV~~LK~~I~~~~gip~~~qrL~~~Gk~L~D~~tL~~~gi~~g~~i~l~~r 81 (88)
T 1sif_A 10 LQLFIKTLTGKTFTVEMEPSDTIENLKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYNIQKESTLHLVLR 81 (88)
T ss_dssp CEEEEEETTSCEEEEECCTTSBHHHHHHHHHHHHCCCGGGCEEEETTEECCTTSBSGGGTCCTTCEEEEEC-
T ss_pred eEEEEEeCCCCEEEEEECCCChHHHHHHHHHHHHCcChhhEEEEECCEECCCCCcHHHcCCCCCCEEEEEEe
Confidence 566666 46788999999999999999999999999999999999999999999999999999999999863
No 56
>4b6w_A Tubulin-specific chaperone; CAP-Gly, ubiquitin-like; HET: MSE; 2.35A {Trypanosoma brucei brucei strain 927}
Probab=99.52 E-value=3.7e-14 Score=113.35 Aligned_cols=72 Identities=14% Similarity=0.069 Sum_probs=65.4
Q ss_pred eeEEEEEe---CCEEEEEEEcCCCCHHHHHHHHhcccCCCccCcEEecc-------CcccCCchhhhhcCCCCCCEEEEe
Q 018493 55 TIRVRVKY---GSIYHEIHINSQATFGELKKLLTGPTGLHHEDQKLIYK-------DKERDSKAFLDVVGVKDKSKLVLV 124 (355)
Q Consensus 55 ~I~V~VK~---gg~~~~V~V~~~sTVgdLK~~I~e~TGVppe~QKLIyk-------GK~ldD~~tLs~~GIKdgSkImLv 124 (355)
.|+|.|.| +...+++.|++++||++||++|+..+|+||++|||+|+ |+.++|+.+|++|||++|++|||+
T Consensus 2 ~V~v~iths~~~~~~~E~r~~~s~TI~~lK~ki~~~~Gip~~~QrLi~~~~~~~~~g~~l~d~~tL~~Y~i~~g~~ihlv 81 (86)
T 4b6w_A 2 VVKVSLTHSASRMRVPEKRYGLAQTIESIKENVFTHFATPPEYMQLQLIDDRGITIEKNMANDKQLGYYQCRDEFVIHVV 81 (86)
T ss_dssp EEEEEEEETTCSCCEEEEEEETTSBHHHHHHHHHTTSCCCGGGEEEEEECTTSCEEESSCCTTSBGGGGTCCTTCEEEEE
T ss_pred EEEEEEEEcCCCCeEEEEEcCccCcHHHHHHHHHHHHCCCHHHEEEEEecCCCCceeeEcCCCCCHHHCCCCCCCEEEEE
Confidence 57888887 34678999999999999999999999999999999975 788999999999999999999999
Q ss_pred ec
Q 018493 125 ED 126 (355)
Q Consensus 125 ~~ 126 (355)
..
T Consensus 82 d~ 83 (86)
T 4b6w_A 82 DL 83 (86)
T ss_dssp EC
T ss_pred eC
Confidence 63
No 57
>2uyz_B Small ubiquitin-related modifier 1; sumoylation, cell division, nuclear protein, ubiquitin-like modifier, UBL conjugation pathway; 1.4A {Homo sapiens} SCOP: d.15.1.1 PDB: 2vrr_B 2iy0_B 2iy1_B 2g4d_B 2las_A 2io2_B 1z5s_B 3uip_B* 1tgz_B* 2bf8_B
Probab=99.51 E-value=2.4e-14 Score=110.04 Aligned_cols=73 Identities=10% Similarity=0.211 Sum_probs=67.9
Q ss_pred CeeEEEEEe-CCEEEEEEEcCCCCHHHHHHHHhcccCCCccCcEEeccCcccCCchhhhhcCCCCCCEEEEeec
Q 018493 54 PTIRVRVKY-GSIYHEIHINSQATFGELKKLLTGPTGLHHEDQKLIYKDKERDSKAFLDVVGVKDKSKLVLVED 126 (355)
Q Consensus 54 ~~I~V~VK~-gg~~~~V~V~~~sTVgdLK~~I~e~TGVppe~QKLIykGK~ldD~~tLs~~GIKdgSkImLv~~ 126 (355)
..|.|+|+. .+..+.++|.+++||++||++|++..|+|+++|+|+|.|+.++|+.+|++|||++|++|+|+..
T Consensus 2 ~~m~i~vk~~~g~~~~~~v~~~~tv~~lk~~i~~~~gi~~~~qrL~~~G~~L~d~~tl~~~~i~~~~~i~l~~~ 75 (79)
T 2uyz_B 2 EYIKLKVIGQDSSEIHFKVKMTTHLKKLKESYCQRQGVPMNSLRFLFEGQRIADNHTPKELGMEEEDVIEVYQE 75 (79)
T ss_dssp CEEEEEEECTTCCEEEEEEETTSCTHHHHHHHHHHHTCCGGGEEEEETTEECCTTCCHHHHTCCTTEEEEEEEC
T ss_pred CeEEEEEECCCCCEEEEEECCCChHHHHHHHHHHHHCCCcccEEEEECCEEeCCCCCHHHcCCCCCCEEEEEEe
Confidence 358899996 5678899999999999999999999999999999999999999999999999999999999853
No 58
>2ojr_A Ubiquitin; lanthide-binding TAG, terbium, TB, SAD phasing, protein binding; 2.60A {Homo sapiens}
Probab=99.51 E-value=3.1e-14 Score=117.62 Aligned_cols=76 Identities=18% Similarity=0.262 Sum_probs=70.2
Q ss_pred CCCCeeEEEEEe-CCEEEEEEEcCCCCHHHHHHHHhcccCCCccCcEEeccCcccCCchhhhhcCCCCCCEEEEeec
Q 018493 51 APPPTIRVRVKY-GSIYHEIHINSQATFGELKKLLTGPTGLHHEDQKLIYKDKERDSKAFLDVVGVKDKSKLVLVED 126 (355)
Q Consensus 51 ~~~~~I~V~VK~-gg~~~~V~V~~~sTVgdLK~~I~e~TGVppe~QKLIykGK~ldD~~tLs~~GIKdgSkImLv~~ 126 (355)
.+...|.|+|++ .+..+.++|++++||++||++|++.+|+|+++|+|+|+|+.++|+.+|++|||++|++|+|+..
T Consensus 31 ~~~~~m~I~Vk~~~g~~~~l~v~~~~TV~~LK~~I~~~~gip~~~qrLi~~Gk~L~D~~tL~~~gI~~gs~I~l~~r 107 (111)
T 2ojr_A 31 DELLAMQIFVKTLTGKTITLEVEPSDTIENVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYNIQKESTLHLVLR 107 (111)
T ss_dssp GGSSCEEEEEECSSSCEEEEEECTTCBHHHHHHHHHHHHCCCTTTEEEEETTEECCSSCBTTTTTCCTTCEEEEEEC
T ss_pred CCCCeEEEEEEcCCCCEEEEEeCCCCCHHHHHHHHHHHHCcCcccEEEEECCEECCCCCcHHHcCCCCCCEEEEEEe
Confidence 345679999997 5688999999999999999999999999999999999999999999999999999999999863
No 59
>1wia_A Hypothetical ubiquitin-like protein (riken cDNA 2010008E23); 'structural genomics, riken structural genomics/proteomics initiative, RSGI; NMR {Mus musculus} SCOP: d.15.1.1
Probab=99.51 E-value=5.9e-14 Score=112.16 Aligned_cols=72 Identities=18% Similarity=0.226 Sum_probs=66.6
Q ss_pred CCCeeEEEEEe-CCEEEEEEEcCCCCHHHHHHHHhcccCCCccCcEEeccCcccCCc-hhhhhcCCCCCCEEEEeec
Q 018493 52 PPPTIRVRVKY-GSIYHEIHINSQATFGELKKLLTGPTGLHHEDQKLIYKDKERDSK-AFLDVVGVKDKSKLVLVED 126 (355)
Q Consensus 52 ~~~~I~V~VK~-gg~~~~V~V~~~sTVgdLK~~I~e~TGVppe~QKLIykGK~ldD~-~tLs~~GIKdgSkImLv~~ 126 (355)
....|.|+|++ .+..+.++|++++||++||++|++.+ +++|||+|+|+.|+|+ .+|.+|||++|++|+|+..
T Consensus 4 ~~~~m~i~Vk~~~g~~~~~~v~~~~TV~~LK~~i~~~~---~~~qrLi~~Gk~L~D~~~tL~~y~i~~g~~i~l~~~ 77 (95)
T 1wia_A 4 GSSGINVRLKFLNDTEELAVARPEDTVGTLKSKYFPGQ---ESQMKLIYQGRLLQDPARTLSSLNITNNCVIHCHRS 77 (95)
T ss_dssp CCCSEEEEEEETTTEEEEEEECSSSBHHHHHHHHSSST---TTTCEEEETTEECCCSSCBTTTTTCCTTEEEEEECC
T ss_pred CCCeEEEEEEeCCCCEEEEEECCCCcHHHHHHHHHhhC---cCcEEEEECCEEccCCcCCHHHcCCCCCCEEEEEEC
Confidence 45679999997 57889999999999999999999998 8999999999999888 9999999999999999964
No 60
>1we6_A Splicing factor, putative; structural genomics, ubiquitin-like domain, riken structural genomics/proteomics initiative, RSGI; NMR {Arabidopsis thaliana} SCOP: d.15.1.1
Probab=99.51 E-value=2.8e-14 Score=117.77 Aligned_cols=72 Identities=24% Similarity=0.228 Sum_probs=65.7
Q ss_pred CeeEEEEEe----CCEEEEEEEcC-CCCHHHHHHHHhcccCCCccCcEEeccCcccCCchhhhhcCCCCCCEEEEee
Q 018493 54 PTIRVRVKY----GSIYHEIHINS-QATFGELKKLLTGPTGLHHEDQKLIYKDKERDSKAFLDVVGVKDKSKLVLVE 125 (355)
Q Consensus 54 ~~I~V~VK~----gg~~~~V~V~~-~sTVgdLK~~I~e~TGVppe~QKLIykGK~ldD~~tLs~~GIKdgSkImLv~ 125 (355)
..|.|+|+. ++..+.++|++ ++||++||++|++.+|+|+++|+|+|+|+.++|+.+|++|||++|++|+|+.
T Consensus 26 ~~i~i~Vk~~~~~~g~~~~l~v~~l~~TV~~LK~~I~~~~gip~~~QrL~~~Gk~L~D~~tL~~y~I~~g~~l~l~~ 102 (111)
T 1we6_A 26 GPATIRVSKPNENDGQFMEITVQSLSENVGSLKEKIAGEIQIPANKQKLSGKAGFLKDNMSLAHYNVGAGEILTLSL 102 (111)
T ss_dssp SCEEEEECCTTCSSSCCEEEEESCSSSBHHHHHHHHHHHTTCCTTTSEEECSSSBCCTTSBTTTTTCSSSCEEEEEC
T ss_pred CcEEEEEEecccCCCcEEEEEecCCCCcHHHHHHHHHHHHCCCHHHeEEEECCEECCCCCcHHHCCCCCCCEEEEEE
Confidence 346777775 46778899998 9999999999999999999999999999999999999999999999999985
No 61
>1hx1_B BAG-1, BAG-family molecular chaperone regulator-1; protein-protein complex, apoptosis, protein folding, molecul chaperone; 1.90A {Homo sapiens} SCOP: a.7.7.1 PDB: 3fzf_B* 3fzh_B* 3fzk_B* 3fzl_B* 3fzm_B* 3ldq_B* 3m3z_B*
Probab=99.50 E-value=1.4e-13 Score=115.50 Aligned_cols=98 Identities=23% Similarity=0.365 Sum_probs=81.5
Q ss_pred chHHHHHHHhhhhhhhhhhhhHHHHHHHHHHhhhhHHHHHH-------HHHhCCCcchhhHhhHHHHHHHHHHhccCCC-
Q 018493 129 SQEKRLLEMRKNAKLEKASKSISEISLEVDRLAGQVSALES-------IITKGGKVAEKDVLNLIELLMNQLLKLDGIM- 200 (355)
Q Consensus 129 s~E~~~~e~kk~k~ieka~~aIs~V~~eVDkLa~ev~~LE~-------~I~~g~Kv~eke~~~LsE~LMq~LLKLD~Ie- 200 (355)
++|++ .++++.+++++++ ..+...+|.+..++..||+ ...+.+|+ ++++..++|.||+.|++||++.
T Consensus 3 ~peeE-~~lK~L~~veksv---~~~~kkl~~~~~el~~iekGFL~kel~~eal~kl-dKrik~~~E~~MK~LE~lDsl~i 77 (114)
T 1hx1_B 3 SPQEE-VELKKLKHLEKSV---EKIADQLEELNKELTGIQQGFLPKDLQAEALCKL-DRRVKATIEQFMKILEEIDTLIL 77 (114)
T ss_dssp CHHHH-HHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHSCSCHHHHHHHHHTT-HHHHHHHHHHHHHHHHHHTTCCC
T ss_pred ChHHH-HHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHcccccHhHHHHHHHH-HHHHHHHHHHHHHHHHHhhcccC
Confidence 56666 5577777777654 5667788888899999877 34456788 9999999999999999999994
Q ss_pred --CChhhHHHHHHHHHHHHHHHHHHHHhhhhcC
Q 018493 201 --ADGDVKLQRKMQVRRVQKYVETLDMLKIKNS 231 (355)
Q Consensus 201 --aeGdaR~qRK~~VkrVQ~~Le~LD~lk~~n~ 231 (355)
...++|.+||.+|++||++|.+||.+.++..
T Consensus 78 ~e~~~~~R~kRK~lV~~iQ~~l~~cD~l~~~i~ 110 (114)
T 1hx1_B 78 PENFKDSRLKRKGLVKKVQAFLAECDTVEQNIC 110 (114)
T ss_dssp CTTCHHHHHHHHHHHHHHHHHHHHHHHHHTTSS
T ss_pred ChhHHHHHHHHHHHHHHHHHHHHHhHHHHHHHH
Confidence 4559999999999999999999999998753
No 62
>1v6e_A Cytoskeleton-associated protein 1; tubulin-specific chaperone B, tubulin folding cofactor B, microtubule, ubiquitin-like fold, structural genomics; NMR {Mus musculus} SCOP: d.15.1.1
Probab=99.50 E-value=3.3e-14 Score=114.44 Aligned_cols=74 Identities=18% Similarity=0.112 Sum_probs=67.1
Q ss_pred CCCeeEEEEEeCCE--EEEEEEcCCCCHHHHHHHHhcccCCCccCcEEeccC---cc----cCCchhhhhcCCCCCCEEE
Q 018493 52 PPPTIRVRVKYGSI--YHEIHINSQATFGELKKLLTGPTGLHHEDQKLIYKD---KE----RDSKAFLDVVGVKDKSKLV 122 (355)
Q Consensus 52 ~~~~I~V~VK~gg~--~~~V~V~~~sTVgdLK~~I~e~TGVppe~QKLIykG---K~----ldD~~tLs~~GIKdgSkIm 122 (355)
....|+|+|++.+. .+++.|++++||++||++|+..+|+|+++|||+|+| +. ++|+.+|.+|||++|++|+
T Consensus 4 ~~~~v~l~I~~~~~~~~~~~~v~~~~TV~~lK~ki~~~~gip~~~qrL~~~~~~g~~~~~l~~D~~tL~~y~i~~g~~l~ 83 (95)
T 1v6e_A 4 GSSGVMVFISSSLNSFRSEKRYSRSLTIAEFKCKLELVVGSPASCMELELYGADDKFYSKLDQEDALLGSYPVDDGCRIH 83 (95)
T ss_dssp CCCCEEEEEEETTSSSCEEEEECTTSBHHHHHHHHHHHTCSCTTTCBCEEECSSSCEEEECCCSSSBTTSSSCCTTCEEE
T ss_pred CCcEEEEEEEECCCCeeEEEEcCccCHHHHHHHHHHHHHCCCHHHeEEEEeCCCCccccccCCCcCCHhHCCCCCCCEEE
Confidence 34569999999766 699999999999999999999999999999999987 43 5899999999999999999
Q ss_pred Eee
Q 018493 123 LVE 125 (355)
Q Consensus 123 Lv~ 125 (355)
|+.
T Consensus 84 v~d 86 (95)
T 1v6e_A 84 VID 86 (95)
T ss_dssp EBC
T ss_pred EEE
Confidence 986
No 63
>3b1l_X E3 ubiquitin-protein ligase parkin; proteasome, ALFA-beta-protein; 1.85A {Mus musculus} PDB: 1mg8_A 2zeq_A 2knb_A 1iyf_A
Probab=99.25 E-value=1.5e-15 Score=115.67 Aligned_cols=71 Identities=17% Similarity=0.329 Sum_probs=65.1
Q ss_pred eEEEEEe-CCEEEEEEEcCCCCHHHHHHHHhcccCCCccCcEEeccCcccCCchhhhhcCCCCCCEEEEeec
Q 018493 56 IRVRVKY-GSIYHEIHINSQATFGELKKLLTGPTGLHHEDQKLIYKDKERDSKAFLDVVGVKDKSKLVLVED 126 (355)
Q Consensus 56 I~V~VK~-gg~~~~V~V~~~sTVgdLK~~I~e~TGVppe~QKLIykGK~ldD~~tLs~~GIKdgSkImLv~~ 126 (355)
+.|+|++ .|..+.++|++++||++||++|++.+|+|+++|+|+|+|+.++|+.+|++|||++|++|+|+..
T Consensus 1 M~i~Vk~~~g~~~~~~v~~~~tV~~lK~~i~~~~gi~~~~qrL~~~gk~L~d~~tL~~~~i~~g~~i~l~~r 72 (76)
T 3b1l_X 1 MIVFVRFNSSYGFPVEVDSDTSILQLKEVVAKQQGVPADQLRVIFAGKELPNHLTVQNCDLEQQSIVHIVQR 72 (76)
Confidence 3577776 4677889999999999999999999999999999999999999999999999999999999853
No 64
>2daf_A FLJ35834 protein; hypothetical protein FLJ35834, ubiquitin-like domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.50 E-value=3e-14 Score=120.90 Aligned_cols=78 Identities=17% Similarity=0.079 Sum_probs=70.3
Q ss_pred CCCCeeEEEEE--eCCEEEEEEEcCCCCHHHHHHHHhcccCCCccCcEEeccCcccCCchhhhhcCCCCCCEEEEeecCC
Q 018493 51 APPPTIRVRVK--YGSIYHEIHINSQATFGELKKLLTGPTGLHHEDQKLIYKDKERDSKAFLDVVGVKDKSKLVLVEDPI 128 (355)
Q Consensus 51 ~~~~~I~V~VK--~gg~~~~V~V~~~sTVgdLK~~I~e~TGVppe~QKLIykGK~ldD~~tLs~~GIKdgSkImLv~~p~ 128 (355)
.-.+.|+|+|+ .++..+.++|++++||++||+.|++..++|+++|+|||+||.++|+++|.+|||++|.+|+|+....
T Consensus 11 ~~~~~itvkv~l~~~~~k~tv~v~~d~TV~dLKe~ls~~~~iP~e~qrLIy~GKiLKD~eTL~~~gIk~g~TIhLvi~s~ 90 (118)
T 2daf_A 11 VEDSLATVKVVLIPVGQEIVIPFKVDTILKYLKDHFSHLLGIPHSVLQIRYSGKILKNNETLVQHGVKPQEIVQVEIFST 90 (118)
T ss_dssp CCSSCEEEEEEETTTCCEEEEEECSSSCSHHHHHHHHHHHTCCTTTEEEEETTEEECSSCCHHHHSCCSSCEEEEEEEES
T ss_pred ccCccEEEEEEEcCCCcEEEEEeCCCCcHHHHHHHHHhhhCCChHHEEEEECCeEcCCcchHHHcCCCCCCEEEEEEecC
Confidence 34566888876 3578899999999999999999999999999999999999999999999999999999999996543
No 65
>3vdz_A Ubiquitin-40S ribosomal protein S27A; gadolinium, MRI contrast agent, peptide-based contrast agent lanthanide binding TAG; 2.40A {Synthetic construct} PDB: 2ojr_A
Probab=99.50 E-value=3.5e-14 Score=117.57 Aligned_cols=73 Identities=19% Similarity=0.287 Sum_probs=68.5
Q ss_pred CeeEEEEEe-CCEEEEEEEcCCCCHHHHHHHHhcccCCCccCcEEeccCcccCCchhhhhcCCCCCCEEEEeec
Q 018493 54 PTIRVRVKY-GSIYHEIHINSQATFGELKKLLTGPTGLHHEDQKLIYKDKERDSKAFLDVVGVKDKSKLVLVED 126 (355)
Q Consensus 54 ~~I~V~VK~-gg~~~~V~V~~~sTVgdLK~~I~e~TGVppe~QKLIykGK~ldD~~tLs~~GIKdgSkImLv~~ 126 (355)
..|.|+|+. .+..+.|.|++++||.+||.+|++.+|+|+++|||+|+|+.++|+.+|++|||++|++|+|+..
T Consensus 34 ~~m~I~Vk~~~G~~~~l~v~~~~TV~~LK~~I~~~~gip~~~QrLi~~Gk~L~D~~tL~~~gI~~gs~I~l~~r 107 (111)
T 3vdz_A 34 LAMQIFVKTLTGKTITLEVEPSDTIENVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYNIQKESTLHLVLR 107 (111)
T ss_dssp GCEEEEEECSSSCEEEEEECTTCBHHHHHHHHHHHHCCCGGGEEEEETTEECCTTSBTTTTTCCTTCEEEEEEC
T ss_pred ccEEEEEEeCCCCEEEEEeCCCCCHHHHHHHHHHHhCCChHHEEEEECCEECCCCCcHHHCCCCCCCEEEEEEe
Confidence 369999995 6788999999999999999999999999999999999999999999999999999999999853
No 66
>2fnj_B Transcription elongation factor B polypeptide 2; beta-sandwich, lectin-like, SPRY, protein transport/signaling protein complex; 1.80A {Mus musculus} SCOP: d.15.1.1 PDB: 1lm8_B 1lqb_A 1vcb_A 2c9w_B 2izv_B 2jz3_B 2xai_C 3dcg_A 3zrc_A* 3zrf_A
Probab=99.50 E-value=2.9e-14 Score=120.94 Aligned_cols=72 Identities=18% Similarity=0.149 Sum_probs=68.0
Q ss_pred eeEEEEEeCCEEEEEEEcCCCCHHHHHHHHhcccCCCccCcEEeccCcccCCchhhhhcCCC-------CCCEEEEeec
Q 018493 55 TIRVRVKYGSIYHEIHINSQATFGELKKLLTGPTGLHHEDQKLIYKDKERDSKAFLDVVGVK-------DKSKLVLVED 126 (355)
Q Consensus 55 ~I~V~VK~gg~~~~V~V~~~sTVgdLK~~I~e~TGVppe~QKLIykGK~ldD~~tLs~~GIK-------dgSkImLv~~ 126 (355)
.|.|+|+++..++.++|.+++||++||++|++++|||+++|||||.||.|+|+.+|++|||+ ++++|+|+-.
T Consensus 2 ~mfl~ir~~ktti~lev~~sdTV~~lK~kI~~~egIP~~qQrLi~~Gk~LeD~~TLsdy~I~~~~a~~q~~stL~L~lr 80 (118)
T 2fnj_B 2 DVFLMIRRHKTTIFTDAKESSTVFELKRIVEGILKRPPEEQRLYKDDQLLDDGKTLGECGFTSQTARPQAPATVGLAFR 80 (118)
T ss_dssp EEEEEEEEBTEEEEEEEETTSBHHHHHHHHHHHHCCCGGGEEEEETTEECCTTSBHHHHTCCTTTSBTTBCEEEEEEEB
T ss_pred cEEEEEecCCEEEEEEeCCcChHHHHHHHHHHHhCCCHHHeEEEECCeECCCCCCHHHcCcccccccCCCCCEEEEEec
Confidence 37889999988899999999999999999999999999999999999999999999999999 7999999854
No 67
>4ajy_B Transcription elongation factor B polypeptide 2; E3 ubiquitin ligase, transcription factor, hypoxic signaling transcription; 1.73A {Homo sapiens} PDB: 1lqb_A 1vcb_A 2c9w_B 2izv_B 2jz3_B 2xai_C 3dcg_A 3zrc_A* 3zrf_A 3ztc_A* 3ztd_A* 3zun_A* 1lm8_B 4b95_A* 2fnj_B 4b9k_A* 4awj_A*
Probab=99.49 E-value=3.7e-14 Score=120.39 Aligned_cols=72 Identities=17% Similarity=0.149 Sum_probs=68.7
Q ss_pred eeEEEEEeCCEEEEEEEcCCCCHHHHHHHHhcccCCCccCcEEeccCcccCCchhhhhcCCCC-------CCEEEEeec
Q 018493 55 TIRVRVKYGSIYHEIHINSQATFGELKKLLTGPTGLHHEDQKLIYKDKERDSKAFLDVVGVKD-------KSKLVLVED 126 (355)
Q Consensus 55 ~I~V~VK~gg~~~~V~V~~~sTVgdLK~~I~e~TGVppe~QKLIykGK~ldD~~tLs~~GIKd-------gSkImLv~~ 126 (355)
.+.|+|+++..++.+++.+++||.+||++|++..|+|+++|||||.||.|+|+.+|++|||++ +++|+|+-.
T Consensus 2 ~vFl~Ikr~ktTI~ldve~sdTV~~lK~kI~~~~giPp~qQrLI~~Gk~LeD~kTL~dy~I~~~ta~~q~~atl~Lvlr 80 (118)
T 4ajy_B 2 DVFLMIRRHKTTIFTDAKESSTVFELKRIVEGILKRPPDEQRLYKDDQLLDDGKTLGECGFTSQTARPQAPATVGLAFR 80 (118)
T ss_dssp EEEEEEEEBTEEEEEEEETTSBHHHHHHHHHHHHCCCGGGEEEEETTEECCTTSBTTTTTCCGGGSBTTBCEEEEEEEC
T ss_pred ceEEEEecCCEEEEEEcCCCChHHHHHHHHHHHHCCCHHHeEEEeCCeECCCcCCHHHcCCCcCcccCCCCCEEEEEEe
Confidence 378999999999999999999999999999999999999999999999999999999999999 999999843
No 68
>3u30_A Ubiquitin, linear DI-ubiquitin; immune system; 2.43A {Homo sapiens}
Probab=99.49 E-value=5.3e-14 Score=123.49 Aligned_cols=76 Identities=18% Similarity=0.282 Sum_probs=69.5
Q ss_pred CCCCeeEEEEE-eCCEEEEEEEcCCCCHHHHHHHHhcccCCCccCcEEeccCcccCCchhhhhcCCCCCCEEEEeec
Q 018493 51 APPPTIRVRVK-YGSIYHEIHINSQATFGELKKLLTGPTGLHHEDQKLIYKDKERDSKAFLDVVGVKDKSKLVLVED 126 (355)
Q Consensus 51 ~~~~~I~V~VK-~gg~~~~V~V~~~sTVgdLK~~I~e~TGVppe~QKLIykGK~ldD~~tLs~~GIKdgSkImLv~~ 126 (355)
.+...|.|+|+ ++++++.|+|++++||++||++|++.+|+|+++|||+|+|+.++|+.+|++|||++|++|+|+..
T Consensus 16 ~~~~~m~i~Vk~~~g~~~~l~v~~~~tV~~lK~~I~~~~gip~~~QrL~~~g~~L~d~~tL~~~~i~~~~~l~l~~~ 92 (172)
T 3u30_A 16 PRGSHMQIFVKTLTGKTITLEVEPSDTIENVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYNIQKESTLHLVLR 92 (172)
T ss_dssp ---CCEEEEEEETTTEEEEEEECTTCBHHHHHHHHHHHHCCCGGGEEEEETTEECCTTCBTGGGTCCTTCEEEEEEC
T ss_pred CCCCcEEEEEEeCCCCEEEEEECCCCcHHHHHHHHHHHHCcChHHEEEEECCccccccCCHhHcCCcccceeeeeec
Confidence 44567999999 57899999999999999999999999999999999999999999999999999999999999853
No 69
>1wyw_B Ubiquitin-like protein SMT3C; hydrolase; 2.10A {Homo sapiens} SCOP: d.15.1.1 PDB: 1y8r_C* 2asq_A 2pe6_B 1a5r_A 2kqs_A 3kyc_D* 3rzw_C
Probab=99.48 E-value=5.5e-14 Score=113.56 Aligned_cols=74 Identities=9% Similarity=0.187 Sum_probs=69.0
Q ss_pred CCCeeEEEEEe-CCEEEEEEEcCCCCHHHHHHHHhcccCCCccCcEEeccCcccCCchhhhhcCCCCCCEEEEee
Q 018493 52 PPPTIRVRVKY-GSIYHEIHINSQATFGELKKLLTGPTGLHHEDQKLIYKDKERDSKAFLDVVGVKDKSKLVLVE 125 (355)
Q Consensus 52 ~~~~I~V~VK~-gg~~~~V~V~~~sTVgdLK~~I~e~TGVppe~QKLIykGK~ldD~~tLs~~GIKdgSkImLv~ 125 (355)
+...|.|+|+. .|..+.+.|.+++||++||++|++..|||+++|+|+|.|+.|+|+.+|++|||++|++|+|+.
T Consensus 18 ~~~~m~I~Vk~~~g~~~~l~v~~~~tv~~lK~~i~~~~gip~~~qrLif~Gk~L~d~~tl~dy~i~~g~~I~l~~ 92 (97)
T 1wyw_B 18 EGEYIKLKVIGQDSSEIHFKVKMTTHLKKLKESYCQRQGVPMNSLRFLFEGQRIADNHTPKELGMEEEDVIEVYQ 92 (97)
T ss_dssp -CCEEEEEEECTTCCEEEEEEETTSCTHHHHHHHHHHHTCCGGGEEEEETTEECCTTCCHHHHTCCTTCEEEEEE
T ss_pred CCCcEEEEEEeCCCCEEEEEECCCCcHHHHHHHHHHHHCCChhhEEEEECCeEcCCCCCHHHCCCCCCCEEEEEE
Confidence 45679999996 568899999999999999999999999999999999999999999999999999999999985
No 70
>2kjr_A CG11242; UBL, ubiquitin, ubiquitin-like, structural genomics, PSI-2, protein structure initiative; NMR {Drosophila melanogaster}
Probab=99.48 E-value=7.7e-14 Score=113.49 Aligned_cols=75 Identities=23% Similarity=0.221 Sum_probs=66.9
Q ss_pred CCCCeeEEEEEeCC---EEEEEEEcCCCCHHHHHHHHhcccCCCccCcEEecc--Cc---c-cCCchhhhhcCCCCCCEE
Q 018493 51 APPPTIRVRVKYGS---IYHEIHINSQATFGELKKLLTGPTGLHHEDQKLIYK--DK---E-RDSKAFLDVVGVKDKSKL 121 (355)
Q Consensus 51 ~~~~~I~V~VK~gg---~~~~V~V~~~sTVgdLK~~I~e~TGVppe~QKLIyk--GK---~-ldD~~tLs~~GIKdgSkI 121 (355)
.+...|+|.|++.. ..+++.|++++||++||++|+..+|||+++|||+|+ |+ . ++|+.+|++|||++|++|
T Consensus 11 ~~~~~v~l~It~s~~~~~~~~~~v~~~~TV~~LK~kI~~~~GiP~~~QrL~~~~~g~~~~~L~~D~~tL~~Y~i~~gsti 90 (95)
T 2kjr_A 11 GKSDFIKVNVSNSHNDAVAFEVKLAKDLTVAQLKTKLEILTGGCAGTMKVQVFKGDTCVSTMDNNDAQLGYYANSDGLRL 90 (95)
T ss_dssp CCCCEEEEEEEESSCSCEEEEEEEETTCBHHHHHHHHHHHHCSCTTTEEEEEEETTEEEEECCCTTSBHHHHCCSSSCEE
T ss_pred CCCCeEEEEEEECCCCceEEEEEeCccCHHHHHHHHHHHHHCcCHHHeEEEEecCCcccceeCCCCCCHhHCCcCCCCEE
Confidence 45678999999854 379999999999999999999999999999999998 45 3 489999999999999999
Q ss_pred EEee
Q 018493 122 VLVE 125 (355)
Q Consensus 122 mLv~ 125 (355)
+|+.
T Consensus 91 hlvD 94 (95)
T 2kjr_A 91 HVVD 94 (95)
T ss_dssp EEEE
T ss_pred EEEC
Confidence 9974
No 71
>1we7_A SF3A1 protein; structural genomics, ubiquitin-like domain, riken structural genomics/proteomics initiative, RSGI, gene regulation; NMR {Mus musculus} SCOP: d.15.1.1 PDB: 1zkh_A
Probab=99.47 E-value=8.5e-14 Score=115.65 Aligned_cols=62 Identities=15% Similarity=0.078 Sum_probs=59.8
Q ss_pred CEEEEEEEcCCCCHHHHHHHHhcccCCCccCcEEeccCcccCCchhhhhcCCCCCCEEEEee
Q 018493 64 SIYHEIHINSQATFGELKKLLTGPTGLHHEDQKLIYKDKERDSKAFLDVVGVKDKSKLVLVE 125 (355)
Q Consensus 64 g~~~~V~V~~~sTVgdLK~~I~e~TGVppe~QKLIykGK~ldD~~tLs~~GIKdgSkImLv~ 125 (355)
|..+.|+|++++||.+||++|++.+|+|+++|+|+|+|+.++|+.+|++|||++|++|+|+.
T Consensus 45 G~~~~l~v~~~~TV~~LK~~I~~~~gip~~~QrL~~~Gk~L~D~~tL~~y~i~~g~~i~lv~ 106 (115)
T 1we7_A 45 GQGLVFTLPLTDQVSVIKVKIHEATGMPAGKQKLQYEGIFIKDSNSLAYYNMASGAVIHLAL 106 (115)
T ss_dssp SEEEEEEECSCSBTHHHHHHHHHHSSCCTTTEEEEETTEEECTTSBHHHHTCCSSCEEEEEE
T ss_pred CeEEEEEECCCCCHHHHHHHHHHHHCCChHHEEEEECCEECCCCCCHHHCCCCCCCEEEEEE
Confidence 57899999999999999999999999999999999999999999999999999999999985
No 72
>1v2y_A 3300001G02RIK protein; hypothetical protein, ubiquitin-like fold, structural genomics, riken structural genomics/proteomics initiative, RSGI; NMR {Mus musculus} SCOP: d.15.1.1
Probab=99.47 E-value=3e-14 Score=118.41 Aligned_cols=75 Identities=17% Similarity=0.238 Sum_probs=66.8
Q ss_pred CCCeeEEEEEe-CCEEEEEEEcCCCCHHHHHHHHhcccCCCcc---------------CcEEeccCccc-CCchhhhhcC
Q 018493 52 PPPTIRVRVKY-GSIYHEIHINSQATFGELKKLLTGPTGLHHE---------------DQKLIYKDKER-DSKAFLDVVG 114 (355)
Q Consensus 52 ~~~~I~V~VK~-gg~~~~V~V~~~sTVgdLK~~I~e~TGVppe---------------~QKLIykGK~l-dD~~tLs~~G 114 (355)
.+..|+|+|+. .+.+++|+|++++||++||++|++.+|+|+. +|+|||.|+.| +|+.+|++||
T Consensus 4 ~~~~M~I~Vk~l~g~~~~v~V~~~~TV~dLK~~I~~~~~i~~~~q~g~~~isw~~~w~q~~Li~~Gk~L~dD~~tL~dyg 83 (105)
T 1v2y_A 4 GSSGMTVRVCKMDGEVMPVVVVQNATVLDLKKAIQRYVQLKQEREGGVQHISWSYVWRTYHLTSAGEKLTEDRKKLRDYG 83 (105)
T ss_dssp CCCSEEEEEECSSSCEEEEEECTTCBHHHHHHHHHHHHHHHHHHTTCCCCCCHHHHHTTEEEESSSCEECCSSSBHHHHT
T ss_pred CCCcEEEEEEecCCCEEEEEECCCChHHHHHHHHHHHhCCCcccccCcceeeeeecceeEEEEeCCcCccCCcCCHHHcC
Confidence 34568999985 6789999999999999999999999999984 56999999997 5779999999
Q ss_pred CCCCCEEEEeec
Q 018493 115 VKDKSKLVLVED 126 (355)
Q Consensus 115 IKdgSkImLv~~ 126 (355)
|++|++|+|+..
T Consensus 84 I~~g~~l~lv~~ 95 (105)
T 1v2y_A 84 IRNRDEVSFIKK 95 (105)
T ss_dssp CCSSEEEEEEEC
T ss_pred CCCCCEEEEEeh
Confidence 999999999853
No 73
>2kdb_A Homocysteine-responsive endoplasmic reticulum- resident ubiquitin-like domain member...; UBL domain, membrane, polymorphism, transmembrane; NMR {Homo sapiens}
Probab=99.46 E-value=4.9e-14 Score=115.53 Aligned_cols=73 Identities=19% Similarity=0.175 Sum_probs=62.3
Q ss_pred CCCeeEEEEEeC-CE--EEEEEEcCCCCHHHHHHHHhcc-cCCCc-cCcEEeccCcccCCchhhhhc--CCCCCCEEEEe
Q 018493 52 PPPTIRVRVKYG-SI--YHEIHINSQATFGELKKLLTGP-TGLHH-EDQKLIYKDKERDSKAFLDVV--GVKDKSKLVLV 124 (355)
Q Consensus 52 ~~~~I~V~VK~g-g~--~~~V~V~~~sTVgdLK~~I~e~-TGVpp-e~QKLIykGK~ldD~~tLs~~--GIKdgSkImLv 124 (355)
....|.|+|++. +. .+.|++++++||++||++|++. .|+|+ ++|||||+||.|+|+.+|++| ||++|++|+|+
T Consensus 20 ~~~~m~I~VK~~~g~~~~i~l~v~~~~TV~~LK~~I~~~~~g~pp~~~QrLIy~Gk~L~D~~tL~~y~~~I~~~~tihLv 99 (99)
T 2kdb_A 20 QGHPVTLIIKAPNQKYSDQTISCFLNWTVGKLKTHLSNVYPSKPLTKDQRLVYSGRLLPDHLQLKDILRKQDEYHMVHLV 99 (99)
T ss_dssp ---CEEEEEECTTSSSCCEEEEECTTSBHHHHHHHHHHHSTTCCCTTTCCEEETTEEECTTSBTHHHHTTTCSEEEEEEC
T ss_pred CCCeEEEEEEcCCCCEEEEEEEcCCCCHHHHHHHHHHHHhcCCCChhhEEEEECCEECCCCCCHHHHhcCCCCCCEEEeC
Confidence 346689999973 33 4688889999999999999985 67765 999999999999999999999 99999999985
No 74
>2kj6_A Tubulin folding cofactor B; methods development, NESG, solution PSI-2, structural genomics, protein structure initiative; NMR {Arabidopsis thaliana}
Probab=99.45 E-value=1.6e-13 Score=112.21 Aligned_cols=74 Identities=14% Similarity=0.164 Sum_probs=65.9
Q ss_pred CCeeEEEEEeCC---EEEEEEEcCCCCHHHHHHHHhcccCCCccCcEEeccCc---c----cCCchhhhhcCCCCCCEEE
Q 018493 53 PPTIRVRVKYGS---IYHEIHINSQATFGELKKLLTGPTGLHHEDQKLIYKDK---E----RDSKAFLDVVGVKDKSKLV 122 (355)
Q Consensus 53 ~~~I~V~VK~gg---~~~~V~V~~~sTVgdLK~~I~e~TGVppe~QKLIykGK---~----ldD~~tLs~~GIKdgSkIm 122 (355)
...|+|.|++.. ..+++.|++++||++||++|+..+||||++|||+|.|+ . ++|+.+|++|||++|++|+
T Consensus 12 ~~~v~l~It~s~~~~~~~e~~v~~~~TV~~LK~kIe~~~Gip~~~QrLi~~g~~g~~~~~L~~D~~tL~~Y~I~~g~~Ih 91 (97)
T 2kj6_A 12 DDSVHLHITHANLKSFSADARFSPQMSVEAVKEKLWKKCGTSVNSMALELYDDSGSKVAVLSDDSRPLGFFSPFDGFRLH 91 (97)
T ss_dssp CCCEEEEEEETTSSCCCEEEEECTTCCHHHHHHHHHHHHCCCTTSEEEEEECSSSCBCCCSSGGGSCHHHHCCCSCCEEE
T ss_pred CceEEEEEEECCCCceEEEEEeCCCChHHHHHHHHHHHHCcCHHHeEEEEecCCCcccceecCCcCCHHHCCCCCCCEEE
Confidence 457888998753 36899999999999999999999999999999999984 3 4899999999999999999
Q ss_pred Eeec
Q 018493 123 LVED 126 (355)
Q Consensus 123 Lv~~ 126 (355)
|+..
T Consensus 92 lvd~ 95 (97)
T 2kj6_A 92 IIDL 95 (97)
T ss_dssp EEEC
T ss_pred EEeC
Confidence 9863
No 75
>2kdi_A Ubiquitin, vacuolar protein sorting-associated protein 27 fusion protein; ubiquitin interacting motif, UIM, protein domain interface; NMR {Saccharomyces cerevisiae}
Probab=99.45 E-value=1.5e-13 Score=114.46 Aligned_cols=73 Identities=19% Similarity=0.272 Sum_probs=67.4
Q ss_pred CeeEEEEEe-CCEEEEEEEcCCCCHHHHHHHHhcccCCCccCcEEeccCcccCCchhhhhcCCCCCCEEEEeec
Q 018493 54 PTIRVRVKY-GSIYHEIHINSQATFGELKKLLTGPTGLHHEDQKLIYKDKERDSKAFLDVVGVKDKSKLVLVED 126 (355)
Q Consensus 54 ~~I~V~VK~-gg~~~~V~V~~~sTVgdLK~~I~e~TGVppe~QKLIykGK~ldD~~tLs~~GIKdgSkImLv~~ 126 (355)
..+.|.|+. .|..+.++|++++||++||++|++.+|+|+++|+|+|+|+.|+|+.+|++|||++|++|+|+..
T Consensus 8 ~~~~i~vk~l~G~~~~l~v~~~~TV~~LK~~I~~~~gip~~~qrLi~~Gk~L~D~~tL~~ygI~~gstI~l~~~ 81 (114)
T 2kdi_A 8 GEFQIFAKTLTGKTITLEVESSDTIDNVKSKIQDKEGIPPDQQRLIWAGKQLEDGRTLSDYNIQRESTLHLVLR 81 (114)
T ss_dssp CCCEEEEEETTCCEEEEECCTTCBHHHHHHHHHHHHCCCGGGEEEEETTEECCTTCBTTTTTCCSSCEEEEEEC
T ss_pred CcEEEEEEeCCCcEEEEEECCCCcHHHHHHHHHHHHCcChHHEEEEECCEECCCCCcHHHCCCCCCCEEEEEEE
Confidence 346778875 6688999999999999999999999999999999999999999999999999999999999864
No 76
>3rt3_B Ubiquitin-like protein ISG15; ubiquitin-like domain, isgylation, antiviral protein-viral P complex; 2.01A {Homo sapiens} PDB: 3sdl_C 3r66_C 3pse_B 1z2m_A
Probab=99.44 E-value=2.1e-13 Score=117.75 Aligned_cols=74 Identities=16% Similarity=0.204 Sum_probs=68.5
Q ss_pred CCeeEEEEEe-CCEEEEEEEcCCCCHHHHHHHHhcccCCCccCcEEeccCcccCCchhhhhcCCCCCCEEEEeec
Q 018493 53 PPTIRVRVKY-GSIYHEIHINSQATFGELKKLLTGPTGLHHEDQKLIYKDKERDSKAFLDVVGVKDKSKLVLVED 126 (355)
Q Consensus 53 ~~~I~V~VK~-gg~~~~V~V~~~sTVgdLK~~I~e~TGVppe~QKLIykGK~ldD~~tLs~~GIKdgSkImLv~~ 126 (355)
...|.|.|++ .|+++.++|++++||++||++|++.+|+|+++|+|+|+|+.++|+.+|++|||++|++|+|+..
T Consensus 79 ~~~m~i~vk~~~g~~~~~~v~~~~tV~~lK~~i~~~~gip~~~q~L~~~G~~L~d~~tL~~y~i~~g~~l~l~~r 153 (159)
T 3rt3_B 79 DEPLSILVRNNKGRSSTYEVRLTQTVAHLKQQVSGLEGVQDDLFWLTFEGKPLEDQLPLGEYGLKPLSTVFMNLR 153 (159)
T ss_dssp CCCEEEEEECTTSCEEEEEECTTSBHHHHHHHHHHHHTCCGGGEEEEETTEECCTTSBGGGGTCCTTCEEEEEEC
T ss_pred CCcEEEEEECCCCCEEEEEeCCCCCHHHHHHHHHHHHCCCHHHEEEEECCeecCCCCCHHHcCCCCCCEEEEEEe
Confidence 3457888887 5788999999999999999999999999999999999999999999999999999999999853
No 77
>3rt3_B Ubiquitin-like protein ISG15; ubiquitin-like domain, isgylation, antiviral protein-viral P complex; 2.01A {Homo sapiens} PDB: 3sdl_C 3r66_C 3pse_B 1z2m_A
Probab=99.42 E-value=2.5e-13 Score=117.24 Aligned_cols=71 Identities=24% Similarity=0.292 Sum_probs=67.3
Q ss_pred eEEEEE-eCCEEEEEEEcCCCCHHHHHHHHhcccCCCccCcEEe-c-cCcccCCchhhhhcCCCCCCEEEEeec
Q 018493 56 IRVRVK-YGSIYHEIHINSQATFGELKKLLTGPTGLHHEDQKLI-Y-KDKERDSKAFLDVVGVKDKSKLVLVED 126 (355)
Q Consensus 56 I~V~VK-~gg~~~~V~V~~~sTVgdLK~~I~e~TGVppe~QKLI-y-kGK~ldD~~tLs~~GIKdgSkImLv~~ 126 (355)
+.|+|+ ++++.+.++|++++||++||++|++.+|+|+++|+|+ | +|+.++|+.+|++|||++|++|+|+..
T Consensus 3 m~i~vk~~~g~~~~l~v~~~~tV~~lK~~I~~~~gip~~~QrL~~~~~g~~L~d~~tL~~y~i~~~~~l~l~~~ 76 (159)
T 3rt3_B 3 WDLTVKMLAGNEFQVSLSSSMSVSELKAQITQKIGVHAFQQRLAVHPSGVALQDRVPLASQGLGPGSTVLLVVD 76 (159)
T ss_dssp CEEEEEETTSCEEEEECCTTCCHHHHHHHHHHHHCCCGGGEEEEEETTCCBCCTTSCGGGGTCCTTCEEEEEEC
T ss_pred eEEEEEECCCCEEEEEeCCCCcHHHHHHHHHHHhCCCHHHEEEEEcCCCCCCCCCCCHHHcCCCCCCEEEEEcc
Confidence 678888 5788999999999999999999999999999999999 9 799999999999999999999999986
No 78
>1wgh_A Ubiquitin-like 3, HCG-1 protein; ubiquitin-like fold, structural genomics, riken structural genomics/proteomics initiative, RSGI, unknown function; NMR {Mus musculus} SCOP: d.15.1.1
Probab=99.42 E-value=3.2e-13 Score=114.07 Aligned_cols=79 Identities=14% Similarity=0.164 Sum_probs=68.1
Q ss_pred CCCCeeEEEEEe-CCEEEEEEEcCCCCHHHHHHHHhc------ccCC--CccCcEEeccCcccCCchhhhhcCCCCC--C
Q 018493 51 APPPTIRVRVKY-GSIYHEIHINSQATFGELKKLLTG------PTGL--HHEDQKLIYKDKERDSKAFLDVVGVKDK--S 119 (355)
Q Consensus 51 ~~~~~I~V~VK~-gg~~~~V~V~~~sTVgdLK~~I~e------~TGV--ppe~QKLIykGK~ldD~~tLs~~GIKdg--S 119 (355)
.+...|.|+|+. .|.++.|+|++++||++||++|++ ..|+ ++++|||||.||.|+|+.+|++|+|+.+ +
T Consensus 12 ~~~~~m~I~vKtl~G~t~~lev~~s~TV~~lK~kI~~~~p~dwke~~p~p~~qqrLIy~GK~LeD~~TL~~y~I~~~~~~ 91 (116)
T 1wgh_A 12 VPADMINLRLILVSGKTKEFLFSPNDSASDIAKHVYDNWPMDWEEEQVSSPNILRLIYQGRFLHGNVTLGALKLPFGKTT 91 (116)
T ss_dssp CCSSSEEEEEECSSSCEEEEEECTTCBHHHHHHHHHHSSSCCSSCCCCCCTTTEEEEETTEEECSSCBTTTTTCCSSCEE
T ss_pred CCCCeEEEEEEeCCCCEEEEEECCcCHHHHHHHHHHHhcccccccCCCCChHHEEEEECCcCCCCCCcHHHcCCCCCCce
Confidence 345679999996 568999999999999999999999 6675 6999999999999999999999999877 5
Q ss_pred EEEEeecCCc
Q 018493 120 KLVLVEDPIS 129 (355)
Q Consensus 120 kImLv~~p~s 129 (355)
+|||+.....
T Consensus 92 tlhLvlr~~~ 101 (116)
T 1wgh_A 92 VMHLVARETL 101 (116)
T ss_dssp EEEEEECSSC
T ss_pred EEEEEccCCC
Confidence 6888765443
No 79
>3l0w_B Monoubiquitinated proliferating cell nuclear antigen, proliferating cell nuclear antigen; replication, DNA damage, DNA repair; 2.80A {Saccharomyces cerevisiae} PDB: 3l10_B
Probab=99.41 E-value=3.3e-13 Score=119.76 Aligned_cols=71 Identities=21% Similarity=0.318 Sum_probs=65.8
Q ss_pred eEEEEEe-CCEEEEEEEcCCCCHHHHHHHHhcccCCCccCcEEeccCcccCCchhhhhcCCCCCCEEEEeec
Q 018493 56 IRVRVKY-GSIYHEIHINSQATFGELKKLLTGPTGLHHEDQKLIYKDKERDSKAFLDVVGVKDKSKLVLVED 126 (355)
Q Consensus 56 I~V~VK~-gg~~~~V~V~~~sTVgdLK~~I~e~TGVppe~QKLIykGK~ldD~~tLs~~GIKdgSkImLv~~ 126 (355)
+.|+|+. .|+.+.++|++++||++||++|++.+|+|+++|||+|+|+.++|+.+|++|||++|++|+|+..
T Consensus 1 MqI~Vk~~~Gk~~~l~v~~~~TV~~LK~~I~~~~gip~~~QrLi~~Gk~L~D~~tL~~y~I~~gstI~Lvlr 72 (169)
T 3l0w_B 1 MQIFVKTLTGKTITLEVESSDTIDNVKSKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYNIQKESTLHLVLR 72 (169)
T ss_dssp CEEEEEETTSCEEEEECCTTCBHHHHHHHHHHHHCCCTTTEEEEETTEECCTTSBGGGGTCCTTCEEEEEEC
T ss_pred CEEEEEeCCCCEEEEEeCCCCCHHHHHHHHHHHHCcCHHHEEEEECCccccCcCcHHHcCCCCCCEEEEEEE
Confidence 4677776 5688999999999999999999999999999999999999999999999999999999999853
No 80
>3b08_A Polyubiquitin-C, ubiquitin; protein complex, signaling protein-metal binding protein COM; HET: TRE; 1.70A {Homo sapiens} PDB: 2w9n_A* 3b0a_A* 3axc_A 2zvn_A 2zvo_A 2y5b_B
Probab=99.41 E-value=4e-13 Score=113.68 Aligned_cols=72 Identities=19% Similarity=0.288 Sum_probs=66.7
Q ss_pred eEEEEEe-CCEEEEEEEcCCCCHHHHHHHHhcccCCCccCcEEeccCcccCCchhhhhcCCCCCCEEEEeecC
Q 018493 56 IRVRVKY-GSIYHEIHINSQATFGELKKLLTGPTGLHHEDQKLIYKDKERDSKAFLDVVGVKDKSKLVLVEDP 127 (355)
Q Consensus 56 I~V~VK~-gg~~~~V~V~~~sTVgdLK~~I~e~TGVppe~QKLIykGK~ldD~~tLs~~GIKdgSkImLv~~p 127 (355)
+.|+|++ ++..+.++|++++||++||++|++.+|+|+++|+|+|+|+.++|+.+|++|||++|++|+|+...
T Consensus 1 M~i~vk~~~g~~~~~~v~~~~tv~~lK~~i~~~~gip~~~q~L~~~g~~L~d~~tL~~~~i~~~~~l~l~~~~ 73 (152)
T 3b08_A 1 MQIFVKTLTGKTITLEVEPSDTIENVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYNIQKESTLHLVLRL 73 (152)
T ss_dssp CEEEEEETTSCEEEEECCTTCBHHHHHHHHHHHHCCCGGGEEEEETTEECCTTSBTGGGTCCTTCEEEEEECC
T ss_pred CEEEEEeCCCCEEEEEECCCCCHHHHHHHHHHHHCcChHHeEEEECCeECcCcccHHHhccCCCCeeEEEeec
Confidence 4678885 56789999999999999999999999999999999999999999999999999999999999753
No 81
>3b08_A Polyubiquitin-C, ubiquitin; protein complex, signaling protein-metal binding protein COM; HET: TRE; 1.70A {Homo sapiens} PDB: 2w9n_A* 3b0a_A* 3axc_A 2zvn_A 2zvo_A 2y5b_B
Probab=99.41 E-value=1e-12 Score=111.22 Aligned_cols=72 Identities=19% Similarity=0.294 Sum_probs=66.5
Q ss_pred eeEEEEEe-CCEEEEEEEcCCCCHHHHHHHHhcccCCCccCcEEeccCcccCCchhhhhcCCCCCCEEEEeec
Q 018493 55 TIRVRVKY-GSIYHEIHINSQATFGELKKLLTGPTGLHHEDQKLIYKDKERDSKAFLDVVGVKDKSKLVLVED 126 (355)
Q Consensus 55 ~I~V~VK~-gg~~~~V~V~~~sTVgdLK~~I~e~TGVppe~QKLIykGK~ldD~~tLs~~GIKdgSkImLv~~ 126 (355)
.+.|.|+. .|..+.++|++++||.+||++|++.+|+|+++|+|+|+|+.++|+.+|++|||++|++|+|+..
T Consensus 76 ~~~i~Vk~~~g~~~~~~v~~~~tv~~lK~~i~~~~gi~~~~qrL~~~g~~L~d~~tL~~~~i~~~~~i~l~~r 148 (152)
T 3b08_A 76 GMQIFVKTLTGKTITLEVEPSDTIENVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYNIQKESTLHLVLR 148 (152)
T ss_dssp CEEEEEEESSSCEEEEEECTTCBHHHHHHHHHHHHCCCGGGEEEEETTEECCTTSBTGGGTCCTTCEEEEEEC
T ss_pred ccceeeeecCCCEEEEEeCCCCcHHHHHHHHHHHhCcChhhEEEEECCEECCCCCCHHHcCCCCCCEEEEEEe
Confidence 46777775 5678999999999999999999999999999999999999999999999999999999999864
No 82
>2gow_A HCG-1 protein, ubiquitin-like protein 3; BC059385, structural genomics, protein structure initiative, PSI; NMR {Homo sapiens}
Probab=99.41 E-value=5.4e-13 Score=113.94 Aligned_cols=77 Identities=14% Similarity=0.163 Sum_probs=67.4
Q ss_pred CCCeeEEEEEe-CCEEEEEEEcCCCCHHHHHHHHhc------ccCCC--ccCcEEeccCcccCCchhhhhcCCCCCC--E
Q 018493 52 PPPTIRVRVKY-GSIYHEIHINSQATFGELKKLLTG------PTGLH--HEDQKLIYKDKERDSKAFLDVVGVKDKS--K 120 (355)
Q Consensus 52 ~~~~I~V~VK~-gg~~~~V~V~~~sTVgdLK~~I~e------~TGVp--pe~QKLIykGK~ldD~~tLs~~GIKdgS--k 120 (355)
....|.|+|+. .|.++.++|++++||++||++|++ ..|+| +++|||||.||.|+|+.+|++|||+.|+ +
T Consensus 14 ~~~~m~I~vktl~G~~~~lev~~s~TV~~lK~~I~~~~p~dwke~ip~~~~~qrLIy~GK~LeD~~TL~~y~I~~~~~~t 93 (125)
T 2gow_A 14 PADMINLRLILVSGKTKEFLFSPNDSASDIAKHVYDNWPMDWEEEQVSSPNILRLIYQGRFLHGNVTLGALKLPFGKTTV 93 (125)
T ss_dssp CTTCEEEEEECTTSCEEEEEECTTSBHHHHHHHHHSSCCCSCCCCTTCCGGGEEEESSSSEEESSCBTGGGCCCTTSEEE
T ss_pred CCCeEEEEEEeCCCCEEEEEeCCccHHHHHHHHHHHHCCcccccCCCCChHHEEEEECCcCCCCCCcHHHcCCCCCCceE
Confidence 44569999986 468999999999999999999999 78885 8999999999999999999999999887 6
Q ss_pred EEEeecCC
Q 018493 121 LVLVEDPI 128 (355)
Q Consensus 121 ImLv~~p~ 128 (355)
|||+....
T Consensus 94 lhlv~r~~ 101 (125)
T 2gow_A 94 MHLVARET 101 (125)
T ss_dssp EEEEECSC
T ss_pred EEEEecCC
Confidence 77775543
No 83
>3u5e_m 60S ribosomal protein L40; translation, ribosome, ribosomal R ribosomal protein, STM1, eukaryotic ribosome; 3.00A {Saccharomyces cerevisiae} PDB: 3u5i_m 4b6a_m 4a18_K 4a19_K 4a1b_K 4a1d_K 4adx_5 3izc_p 3izs_p 3iz5_p 3izr_p
Probab=99.40 E-value=2.2e-14 Score=121.44 Aligned_cols=70 Identities=21% Similarity=0.324 Sum_probs=0.0
Q ss_pred eEEEEEe-CCEEEEEEEcCCCCHHHHHHHHhcccCCCccCcEEeccCcccCCchhhhhcCCCCCCEEEEee
Q 018493 56 IRVRVKY-GSIYHEIHINSQATFGELKKLLTGPTGLHHEDQKLIYKDKERDSKAFLDVVGVKDKSKLVLVE 125 (355)
Q Consensus 56 I~V~VK~-gg~~~~V~V~~~sTVgdLK~~I~e~TGVppe~QKLIykGK~ldD~~tLs~~GIKdgSkImLv~ 125 (355)
|.|+|++ +|.++.|+|++++||++||++|++.+|||+++|+|+|+|+.++|+.+|++|||++|++|+|+.
T Consensus 1 M~I~Vk~~~G~~~~l~v~~~~TV~~LK~~I~~~~gip~~~QrLi~~Gk~L~D~~tL~~~~I~~gsti~l~~ 71 (128)
T 3u5e_m 1 MQIFVKTLTGKTITLEVESSDTIDNVKSKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYNIQKESTLHLVL 71 (128)
T ss_dssp -----------------------------------------------------------------------
T ss_pred CEEEEEeCCCCEEEEEeCCCCCHHHHHHHHHHHhCcChHHEEEEECCEECCCCCchhhhccCCCCEEEEEE
Confidence 4567776 567899999999999999999999999999999999999999999999999999999999985
No 84
>1t0y_A Tubulin folding cofactor B; ubiquitin-like, cytoskeleton, microtubule, CESG, structural genomics, protein structure initiative, PSI; NMR {Caenorhabditis elegans} SCOP: d.15.1.1
Probab=99.40 E-value=4.3e-13 Score=112.99 Aligned_cols=73 Identities=18% Similarity=0.219 Sum_probs=66.4
Q ss_pred CCeeEEEEEeCCE--EEEEEEcCCCCHHHHHHHHhcccCCCccCcEEeccC---cc----cCCchhhhhcCCCCCCEEEE
Q 018493 53 PPTIRVRVKYGSI--YHEIHINSQATFGELKKLLTGPTGLHHEDQKLIYKD---KE----RDSKAFLDVVGVKDKSKLVL 123 (355)
Q Consensus 53 ~~~I~V~VK~gg~--~~~V~V~~~sTVgdLK~~I~e~TGVppe~QKLIykG---K~----ldD~~tLs~~GIKdgSkImL 123 (355)
...|+|.|++.+. .+++.|++++||++||.+|+..+|||+++|||+|.| +. ++|+.+|.+|||++|++|+|
T Consensus 4 ~~~v~l~V~~~~~~~~~e~~v~~~~TV~~lK~ki~~~~Gip~~~qrL~~~g~~~~~~~~l~~D~~tL~~y~i~~g~~ihv 83 (122)
T 1t0y_A 4 TEVYDLEITTNATDFPMEKKYPAGMSLNDLKKKLELVVGTTVDSMRIQLFDGDDQLKGELTDGAKSLKDLGVRDGYRIHA 83 (122)
T ss_dssp CCEEEEEEEESSCCSCEEEEEETTSBHHHHHHHHHHHHCCCTTTEEEEEECSSSSEEEECCCCSSBTTTTTCCSSEEEEE
T ss_pred CCEEEEEEEECCCCccEEEEeCCCCcHHHHHHHHHHHhCCCHHHeEEEEecCCCccccccCCCcCCHHHCCCCCCCEEEE
Confidence 3479999999766 689999999999999999999999999999999987 42 48999999999999999999
Q ss_pred ee
Q 018493 124 VE 125 (355)
Q Consensus 124 v~ 125 (355)
+.
T Consensus 84 vd 85 (122)
T 1t0y_A 84 VD 85 (122)
T ss_dssp EE
T ss_pred Ee
Confidence 86
No 85
>4dbg_A Ranbp-type and C3HC4-type zinc finger-containing; ubiquitin fold, ubiquitination, ligase; 2.71A {Homo sapiens} PDB: 2lgy_A
Probab=99.39 E-value=8.7e-13 Score=109.82 Aligned_cols=72 Identities=15% Similarity=0.136 Sum_probs=64.5
Q ss_pred eeEEEEEeC---CEEEEEEEcCCCCHHHHHHHHhcccCCCccCcEEeccCcccCCchhhhhcCC-CCCCEEEEeec
Q 018493 55 TIRVRVKYG---SIYHEIHINSQATFGELKKLLTGPTGLHHEDQKLIYKDKERDSKAFLDVVGV-KDKSKLVLVED 126 (355)
Q Consensus 55 ~I~V~VK~g---g~~~~V~V~~~sTVgdLK~~I~e~TGVppe~QKLIykGK~ldD~~tLs~~GI-KdgSkImLv~~ 126 (355)
.+.|+|+.- +..+.++|.+++||++||++|++..|+|+++|||+|+|+.++|+.+|.+||| ++|++|+|+--
T Consensus 24 ~l~v~v~d~~s~~~~i~l~V~ps~TV~~LK~~I~~k~Gipp~~QRli~ggkll~D~~TL~~ygI~~~G~t~hL~l~ 99 (105)
T 4dbg_A 24 RLWVSVEDAQMHTVTIWLTVRPDMTVASLKDMVFLDYGFPPVLQQWVIGQRLARDQETLHSHGVRQNGDSAYLYLL 99 (105)
T ss_dssp EEEEEEEESSSCCEEEEEEECTTCBHHHHHHHHHHHHCCCGGGEEEEETTEEECTTCBTGGGTCCSTTCEEEEEEC
T ss_pred EEEEEEEccCCCCceEEEEECCcChHHHHHHHHHHHhCCCHHHEEEeccCeEccCcCcHHHcCCCCCCCEEEEEEE
Confidence 366666652 3788999999999999999999999999999999999999999999999999 59999999864
No 86
>3q3f_A Ribonuclease/ubiquitin chimeric protein; domain SWAP, oligomerization, ubiquitin insertion, hydrolase binding; 2.17A {Bacillus amyloliquefaciens}
Probab=99.37 E-value=6.6e-13 Score=120.57 Aligned_cols=72 Identities=19% Similarity=0.261 Sum_probs=68.0
Q ss_pred eeEEEEEe-CCEEEEEEEcCCCCHHHHHHHHhcccCCCccCcEEeccCcccCCchhhhhcCCCCCCEEEEeec
Q 018493 55 TIRVRVKY-GSIYHEIHINSQATFGELKKLLTGPTGLHHEDQKLIYKDKERDSKAFLDVVGVKDKSKLVLVED 126 (355)
Q Consensus 55 ~I~V~VK~-gg~~~~V~V~~~sTVgdLK~~I~e~TGVppe~QKLIykGK~ldD~~tLs~~GIKdgSkImLv~~ 126 (355)
.|.|+|++ .+.++.|+|++++||.+||++|++.+|+|+++|+|+|+|+.|+|+.+|++|||++|++|+|+..
T Consensus 105 eMqI~VKtl~Gkt~~l~V~~s~TV~~LK~kI~~~~gIp~~~QrLi~~Gk~L~D~~tL~dygI~~gstI~Lvlr 177 (189)
T 3q3f_A 105 GGQIFVKTLTGKTITLEVEPSDTIENVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYNIQKESTLHLVLR 177 (189)
T ss_dssp CEEEEEECTTSCEEEEEECTTCBHHHHHHHHHHHHCCCGGGCCEEETTEECCTTCBGGGGTCCTTCEEEECCC
T ss_pred ceeeeeecCCCCEEEEEeCCCCcHHHHHHHHHhccCCCHHHEEEEECCEECCCCCCHHHCCCCCCCEEEEEEE
Confidence 48999997 5788999999999999999999999999999999999999999999999999999999999853
No 87
>3u30_A Ubiquitin, linear DI-ubiquitin; immune system; 2.43A {Homo sapiens}
Probab=99.36 E-value=1.7e-12 Score=113.80 Aligned_cols=71 Identities=20% Similarity=0.308 Sum_probs=65.3
Q ss_pred eeEEEEE-eCCEEEEEEEcCCCCHHHHHHHHhcccCCCccCcEEeccCcccCCchhhhhcCCCCCCEEEEee
Q 018493 55 TIRVRVK-YGSIYHEIHINSQATFGELKKLLTGPTGLHHEDQKLIYKDKERDSKAFLDVVGVKDKSKLVLVE 125 (355)
Q Consensus 55 ~I~V~VK-~gg~~~~V~V~~~sTVgdLK~~I~e~TGVppe~QKLIykGK~ldD~~tLs~~GIKdgSkImLv~ 125 (355)
.+.|.|+ ..++++.+.|++++||.+||++|+..+|+|+++|+|+|+|+.++|+.+|.+|||++|++|+|+.
T Consensus 96 g~~i~Vk~~~g~~~~l~v~~~~tV~~lK~~I~~~~gip~~~q~L~~~g~~L~D~~tL~~y~i~~g~tl~l~~ 167 (172)
T 3u30_A 96 GMQIFVKTLTGKTITLEVEPSDTIENVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYNIQKESTLHLVL 167 (172)
T ss_dssp CEEEEEEESSCCEEEEEECTTCBHHHHHHHHHHHHCCCGGGCCEEETTEECCTTSBSGGGTCCTTCEEEECC
T ss_pred cccceeecccCcceeEEecCCCCHHHHHHHHHHHhCCCceeEEEEECCccCCCCCcHHHhCCCCCCEEEEEE
Confidence 3556666 4678899999999999999999999999999999999999999999999999999999999985
No 88
>1wf9_A NPL4 family protein; beta-grAsp fold like domain, hypothetical protein, structural genomics, NPPSFA; NMR {Arabidopsis thaliana} SCOP: d.15.1.1
Probab=99.31 E-value=4.1e-12 Score=104.60 Aligned_cols=72 Identities=15% Similarity=0.216 Sum_probs=63.7
Q ss_pred eEEEEEeCCEEEEEEEc-CCCCHHHHHHHHhcccCCCccCcEEeccCc-----------c----cCCchhhhhcCCCCCC
Q 018493 56 IRVRVKYGSIYHEIHIN-SQATFGELKKLLTGPTGLHHEDQKLIYKDK-----------E----RDSKAFLDVVGVKDKS 119 (355)
Q Consensus 56 I~V~VK~gg~~~~V~V~-~~sTVgdLK~~I~e~TGVppe~QKLIykGK-----------~----ldD~~tLs~~GIKdgS 119 (355)
|.|+|+.....+.|+|+ +++||.+||++|++.+|||+++|+|+|.|+ . ++|+.+|.+|||++|+
T Consensus 8 M~irvrs~~G~~~v~v~~~~~Tv~~LK~kI~~~~gip~~~QrL~~~~~~~~~k~~~~~~~l~~~l~d~~tL~~~gi~~G~ 87 (107)
T 1wf9_A 8 TMLRVRSRDGLERVSVDGPHITVSQLKTLIQDQLQIPIHNQTLSTNRNLLLAKSPSDFLAFTDMADPNLRISSLNLAHGS 87 (107)
T ss_dssp EEEEEECSSCEEEEEECCTTSBHHHHHHHHHHHSCCCTTTCCCBSSGGGGTCCSHHHHTTCCSSCCTTCBGGGTCCCTTC
T ss_pred EEEEEECCCCCEEEEECCCCCcHHHHHHHHHHHhCcCcccCEEEECCccccccCccccccccccCCCCCCHHHCCCCCCC
Confidence 67888875445578999 999999999999999999999999999998 4 5899999999999999
Q ss_pred EEEEeecC
Q 018493 120 KLVLVEDP 127 (355)
Q Consensus 120 kImLv~~p 127 (355)
+|+|+...
T Consensus 88 ~L~l~~~~ 95 (107)
T 1wf9_A 88 MVYLAYEG 95 (107)
T ss_dssp EEECCCSS
T ss_pred EEEEEeCC
Confidence 99998653
No 89
>3u5c_f 40S ribosomal protein S31; translation, ribosome, ribosomal, ribosomal R ribosomal protein, eukaryotic ribosome, RNA-protein C; 3.00A {Saccharomyces cerevisiae} PDB: 3u5g_f
Probab=99.31 E-value=1.7e-13 Score=120.36 Aligned_cols=71 Identities=21% Similarity=0.318 Sum_probs=0.0
Q ss_pred eEEEEEe-CCEEEEEEEcCCCCHHHHHHHHhcccCCCccCcEEeccCcccCCchhhhhcCCCCCCEEEEeec
Q 018493 56 IRVRVKY-GSIYHEIHINSQATFGELKKLLTGPTGLHHEDQKLIYKDKERDSKAFLDVVGVKDKSKLVLVED 126 (355)
Q Consensus 56 I~V~VK~-gg~~~~V~V~~~sTVgdLK~~I~e~TGVppe~QKLIykGK~ldD~~tLs~~GIKdgSkImLv~~ 126 (355)
|.|.|++ +|..+.|+|++++||++||++|++.+|||+++|+|+|+|+.|+|+.+|++|||++|++|+|+..
T Consensus 1 MqI~VK~l~G~~~~l~V~~~~TV~~LK~~I~~~~gip~~~QrLi~~Gk~L~D~~tL~dygI~~gstL~Lvlr 72 (152)
T 3u5c_f 1 MQIFVKTLTGKTITLEVESSDTIDNVKSKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYNIQKESTLHLVLR 72 (152)
T ss_dssp ------------------------------------------------------------------------
T ss_pred CEEEEEeCCCCEEEEEECCCCCHHHHHHHHHHHhCCCHHHEEEEECCEEccccCcHHHcCCCCCCEEEEEee
Confidence 3567776 4678899999999999999999999999999999999999999999999999999999999853
No 90
>2dzj_A Synaptic glycoprotein SC2; ubiquitin-like fold, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.31 E-value=4.6e-12 Score=101.36 Aligned_cols=71 Identities=18% Similarity=0.170 Sum_probs=61.8
Q ss_pred CCeeEEEEEeC--CEE-EEE-EEcCCCCHHHHHHHHhc-ccCCCccCcEEecc--CcccCCchhhhhcCCCCCCEEEE
Q 018493 53 PPTIRVRVKYG--SIY-HEI-HINSQATFGELKKLLTG-PTGLHHEDQKLIYK--DKERDSKAFLDVVGVKDKSKLVL 123 (355)
Q Consensus 53 ~~~I~V~VK~g--g~~-~~V-~V~~~sTVgdLK~~I~e-~TGVppe~QKLIyk--GK~ldD~~tLs~~GIKdgSkImL 123 (355)
..+|.|+|+.. ... +.| +|++++||++||+.|++ ..|++|++|+|+|. ||.|+|+.+|++|||++|++|++
T Consensus 8 ~~~M~I~Vk~~~g~~~~~~l~~v~~~~TV~~lK~~I~~~~~~i~~~~QrL~~~~~Gk~L~D~~tL~~y~i~~~stl~~ 85 (88)
T 2dzj_A 8 MKHYEVEILDAKTREKLCFLDKVEPHATIAEIKNLFTKTHPQWYPARQSLRLDPKGKSLKDEDVLQKLPVGTTATLYF 85 (88)
T ss_dssp CCCEEEEEEESSSCCCCEEEEEECSSCBHHHHHHHHHHHCSSSCTTTCCEESSTTSCCCCTTCBTTTSSCCSEEEEEE
T ss_pred eEEEEEEEECCCCCEEeeEEeEcCCCCcHHHHHHHHHHHhcCCChHHeEEEecCCCcCcCCCCCHHHcCCCCCCEEEE
Confidence 34588888863 332 468 99999999999999999 58999999999965 99999999999999999999887
No 91
>1oqy_A HHR23A, UV excision repair protein RAD23 homolog A; DNA repair, proteasome-mediated degradation, protein- protein interaction, replication; NMR {Homo sapiens} SCOP: a.5.2.1 a.5.2.1 a.189.1.1 d.15.1.1 PDB: 1qze_A 1tp4_A
Probab=99.30 E-value=1.9e-12 Score=128.05 Aligned_cols=72 Identities=18% Similarity=0.254 Sum_probs=65.7
Q ss_pred CCeeEEEEEe-CCEEEEEEEcCCCCHHHHHHHHhc---ccCCCccCcEEeccCcccCCchhhhhcCCCCCCEEEEe
Q 018493 53 PPTIRVRVKY-GSIYHEIHINSQATFGELKKLLTG---PTGLHHEDQKLIYKDKERDSKAFLDVVGVKDKSKLVLV 124 (355)
Q Consensus 53 ~~~I~V~VK~-gg~~~~V~V~~~sTVgdLK~~I~e---~TGVppe~QKLIykGK~ldD~~tLs~~GIKdgSkImLv 124 (355)
..+|+|+||+ .+++|.|+|++++||++||++|+. ++|||+++|||||+||.|+|+.+|++|||++|++|++|
T Consensus 5 ~~~M~I~VKtl~Gk~~~leV~~~~TV~~LK~~I~~~~~~~gip~~~QrLiy~GK~L~D~~tL~dygI~~gstIv~l 80 (368)
T 1oqy_A 5 SSAVTITLKTLQQQTFKIRMEPDETVKVLKEKIEAEKGRDAFPVAGQKLIYAGKILSDDVPIRDYRIDEKNFVVVM 80 (368)
T ss_dssp -CCCCEEEEETTTEEEEECCCTTCBHHHHHHHHHHHTCSSSCCSTEEEEESSSSEECSSSBTTTTCCCTTSCEEEE
T ss_pred CceEEEEEEeCCCCEEEEEeCCCChHHHHHHHHHHHhCcCCCChhheEEEECCeecCCcCCHHHcCCCCCCEEEEE
Confidence 3568899998 478999999999999999999999 78999999999999999999999999999999999444
No 92
>1se9_A Ubiquitin family; ubiquitin-like, cell-free, wheat GERM, structural genomics, protein structure initiative, CESG; NMR {Arabidopsis thaliana} SCOP: d.15.1.1
Probab=99.30 E-value=4.1e-12 Score=108.91 Aligned_cols=74 Identities=12% Similarity=0.119 Sum_probs=63.2
Q ss_pred CCeeEEEEEe--CCEEEEEEEcCCCCHHHHHHHH-----hcccCCCc--cCcEEeccCcccCCchhhhhcCCCCC-----
Q 018493 53 PPTIRVRVKY--GSIYHEIHINSQATFGELKKLL-----TGPTGLHH--EDQKLIYKDKERDSKAFLDVVGVKDK----- 118 (355)
Q Consensus 53 ~~~I~V~VK~--gg~~~~V~V~~~sTVgdLK~~I-----~e~TGVpp--e~QKLIykGK~ldD~~tLs~~GIKdg----- 118 (355)
...+.|+|+. |....++++++++||.+||++| ++..|+|+ ++|||||.||.|+|+.+|++|+|++|
T Consensus 14 ~~~~~i~~kt~~G~~i~~l~v~psdTV~~lK~kI~~~~p~dkegiP~~~~qQrLIy~GK~LeD~~TLsdy~I~~~~~~~~ 93 (126)
T 1se9_A 14 HNQLEIKFRLTDGSDIGPKAFPDATTVSALKETVISEWPREKENGPKTVKEVKLISAGKVLENSKTVKDYRSPVSNLAGA 93 (126)
T ss_dssp CCCEEEEEEETTSCEEEEEEECTTCBHHHHHHHHHHHSCTTCSSSCCSGGGEEEEETTEECCTTSBGGGGSCCTTSCTTC
T ss_pred cccEEEEEEECCCCEEEeeecCccCHHHHHHHHHHhhcccccccCCCChhhEEEEECCeECcCCCcHHHcCCCcCCccCC
Confidence 3556777765 4455589999999999999999 67889997 89999999999999999999999999
Q ss_pred -CEEEEeec
Q 018493 119 -SKLVLVED 126 (355)
Q Consensus 119 -SkImLv~~ 126 (355)
++|+|+-.
T Consensus 94 v~tmhlVlr 102 (126)
T 1se9_A 94 VTTMHVIIQ 102 (126)
T ss_dssp CEEEEEEEC
T ss_pred cEEEEEEec
Confidence 56888754
No 93
>2kzr_A Ubiquitin thioesterase OTU1; structural genomics, northeast structural genomics consortiu PSI-2, protein structure initiative, hydrolase; NMR {Mus musculus}
Probab=99.29 E-value=3.5e-12 Score=100.68 Aligned_cols=72 Identities=22% Similarity=0.288 Sum_probs=62.6
Q ss_pred eEEEEEeCCEEEEEE-EcCCCCHHHHHHHHhcccCCCccCcEEeccC--cccC---CchhhhhcCCCCCCEEEEeecC
Q 018493 56 IRVRVKYGSIYHEIH-INSQATFGELKKLLTGPTGLHHEDQKLIYKD--KERD---SKAFLDVVGVKDKSKLVLVEDP 127 (355)
Q Consensus 56 I~V~VK~gg~~~~V~-V~~~sTVgdLK~~I~e~TGVppe~QKLIykG--K~ld---D~~tLs~~GIKdgSkImLv~~p 127 (355)
|+|+|++.+..+.|. |++++||++||+.|++.+||++++|+|+|.+ |.++ |+.+|++|||++|++|+|..+.
T Consensus 1 m~i~vr~~~G~~~v~~l~~~~Tv~~Lk~~I~~~~gi~~~~qrL~~~~p~k~l~l~~~~~tL~~~gl~~g~~l~v~~~~ 78 (86)
T 2kzr_A 1 WRVRCKAKGGTHLLQGLSSRTRLRELQGQIAAITGIAPGSQRILVGYPPECLDLSDRDITLGDLPIQSGDMLIVEEDQ 78 (86)
T ss_dssp CCEEEEETTEEEEECSCCTTCBHHHHHHHHHHHTCCCTTTCCCEESSCCCCCCCCCSSCBTTTSSCCTTCEEECCCCS
T ss_pred CEEEEEcCCCCEEeeecCCCCCHHHHHHHHHHHhCCCccceEEEeCCCCcccccCCCCCCHHHcCCCCCCEEEEEeCC
Confidence 467888865566788 9999999999999999999999999999864 7763 7889999999999999998753
No 94
>3ai5_A Yeast enhanced green fluorescent protein, ubiquit; ubiquitin, fusion protein, fluore protein, transcription; HET: CR2; 1.40A {Aequorea victoria} PDB: 3ako_B*
Probab=99.28 E-value=6.5e-12 Score=121.67 Aligned_cols=73 Identities=19% Similarity=0.296 Sum_probs=68.7
Q ss_pred CCeeEEEEEe-CCEEEEEEEcCCCCHHHHHHHHhcccCCCccCcEEeccCcccCCchhhhhcCCCCCCEEEEee
Q 018493 53 PPTIRVRVKY-GSIYHEIHINSQATFGELKKLLTGPTGLHHEDQKLIYKDKERDSKAFLDVVGVKDKSKLVLVE 125 (355)
Q Consensus 53 ~~~I~V~VK~-gg~~~~V~V~~~sTVgdLK~~I~e~TGVppe~QKLIykGK~ldD~~tLs~~GIKdgSkImLv~ 125 (355)
...|.|.|++ .++.+.|+|++++||++||++|++.+|||+++|||+|+|+.|+|+.+|++|||++|++|+|+.
T Consensus 231 ~~~MqI~VKtl~Gk~~~leV~~s~TV~dLK~kI~~~~GIp~~~QRLi~~Gk~L~D~~TLsdygI~~gstL~Lvl 304 (307)
T 3ai5_A 231 TGSMQIFVKTLTGKTITLEVEPSDTIENVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYNIQKESTLHLVL 304 (307)
T ss_dssp CCCEEEEEECTTSCEEEEEECTTCBHHHHHHHHHHHHCCCGGGCEEEETTEECCTTSBTGGGTCCTTCEEEEEC
T ss_pred CCeEEEEEEeCCCCEEEEEECCCCcHHHHHHHHHHHHCcChHHEEEEeCCeecCCCCCHHHcCCCCCCEEEEEE
Confidence 4568899998 568899999999999999999999999999999999999999999999999999999999985
No 95
>1wjn_A Tubulin-folding protein TBCE; ubiquitin-like domain, progressive motor neuropathy, structural genomics; NMR {Mus musculus} SCOP: d.15.1.1
Probab=99.14 E-value=2.4e-10 Score=91.99 Aligned_cols=76 Identities=14% Similarity=0.142 Sum_probs=65.5
Q ss_pred CCCCeeEEEEEe----CCEEEEEEEcCCCCHHHHHHHHhcccCCCccCcEEeccCc------c-c-CCchhhhhcCCCCC
Q 018493 51 APPPTIRVRVKY----GSIYHEIHINSQATFGELKKLLTGPTGLHHEDQKLIYKDK------E-R-DSKAFLDVVGVKDK 118 (355)
Q Consensus 51 ~~~~~I~V~VK~----gg~~~~V~V~~~sTVgdLK~~I~e~TGVppe~QKLIykGK------~-l-dD~~tLs~~GIKdg 118 (355)
+....|+|.|++ .+..+++.|+.+.||++||.+|+..||+|+..|||+|.+. . + +|..+|..|||.+|
T Consensus 5 ~~~~~v~l~I~~~~~~~~~~~e~~l~~~~TV~~LK~~i~~~~gip~~~q~L~~~~~~~~~~~~~L~~d~~~L~~y~i~~G 84 (97)
T 1wjn_A 5 SSGQLLTLKIKCSNQPERQILEKQLPDSMTVQKVKGLLSRLLKVPVSELLLSYESSKMPGREIELENDLQPLQFYSVENG 84 (97)
T ss_dssp SSSCEEEEEEEESSCSSSCCEEEEEETTSBHHHHHHHHHTTTTCCTTTCEEEEECTTSCSCEEECCCSSSBSGGGTCCTT
T ss_pred ccCccEEEEEEecCCCCCcEEEEECCCCCCHHHHHHHHHHHHCCChhHeEEEEEcCCCCceeeccCCCcccHhhcCCCCC
Confidence 445678888875 3568889999999999999999999999999999998742 2 3 78899999999999
Q ss_pred CEEEEeec
Q 018493 119 SKLVLVED 126 (355)
Q Consensus 119 SkImLv~~ 126 (355)
++|+|...
T Consensus 85 ~~I~V~d~ 92 (97)
T 1wjn_A 85 DCLLVRWS 92 (97)
T ss_dssp CEEEEECC
T ss_pred CEEEEEec
Confidence 99999863
No 96
>2io1_B Small ubiquitin-related modifier 3 precursor; SUMO, SENP, ULP, complex, protein binding, hydrolase; 2.60A {Homo sapiens} SCOP: d.15.1.1
Probab=98.98 E-value=1e-09 Score=89.00 Aligned_cols=74 Identities=11% Similarity=0.181 Sum_probs=67.9
Q ss_pred CCCeeEEEEEe-CCEEEEEEEcCCCCHHHHHHHHhcccCCCccCcEEeccCcccCCchhhhhcCCCCCCEEEEee
Q 018493 52 PPPTIRVRVKY-GSIYHEIHINSQATFGELKKLLTGPTGLHHEDQKLIYKDKERDSKAFLDVVGVKDKSKLVLVE 125 (355)
Q Consensus 52 ~~~~I~V~VK~-gg~~~~V~V~~~sTVgdLK~~I~e~TGVppe~QKLIykGK~ldD~~tLs~~GIKdgSkImLv~ 125 (355)
....|+|+|+. .+..+.+.|.+++++..|++.++++.|+++++++|+|.|+.++++.|+.+|++.+|++|.|+.
T Consensus 4 ~~~~i~ikVk~~~g~~i~~~v~~~t~l~kl~~~y~~~~gi~~~~~rf~FdG~~l~~~~Tp~dl~medgD~Idv~~ 78 (94)
T 2io1_B 4 MNDHINLKVAGQDGSVVQFKIKRHTPLSKLMKAYCERQGLSMRQIRFRFDGQPINETDTPAQLEMEDEDTIDVFQ 78 (94)
T ss_dssp --CEEEEEEECTTSCEEEEEEETTSCTHHHHHHHHHHHTCCGGGEEEEETTEECCTTCCTTTTTCCTTCEEEEEE
T ss_pred CCCeEEEEEECCCCCEEEEEECCCCHHHHHHHHHHHHhCCCcccEEEEECCEEcCCCCCHHHcCCCCCCEEEEEE
Confidence 35679999996 567788999999999999999999999999999999999999999999999999999999985
No 97
>3a4r_A Nfatc2-interacting protein; ubiquitin fold, coiled coil, cytoplasm, methylation, nucleus, transcription; 1.00A {Mus musculus} PDB: 3a4s_C 3rd2_A
Probab=98.97 E-value=2e-09 Score=84.28 Aligned_cols=75 Identities=13% Similarity=0.202 Sum_probs=68.3
Q ss_pred CCCCeeEEEEEe-CC-EEEEEEEcCCCCHHHHHHHHhcccCCCccCcEEeccCcccCCchhhhhcCCCCCCEEEEee
Q 018493 51 APPPTIRVRVKY-GS-IYHEIHINSQATFGELKKLLTGPTGLHHEDQKLIYKDKERDSKAFLDVVGVKDKSKLVLVE 125 (355)
Q Consensus 51 ~~~~~I~V~VK~-gg-~~~~V~V~~~sTVgdLK~~I~e~TGVppe~QKLIykGK~ldD~~tLs~~GIKdgSkImLv~ 125 (355)
.....|+|+|+. .+ ..+.+.|.+++++..|+...++..|+++++++|+|.|+.+.++.|+.+|++.+|+.|.+++
T Consensus 3 ~~~~~i~ikV~~~~g~~~i~~~i~~~t~l~kl~~~y~~~~gi~~~~~rf~fdG~~l~~~~Tp~~l~medgD~Idv~~ 79 (79)
T 3a4r_A 3 LGSQELRLRVQGKEKHQMLEISLSPDSPLKVLMSHYEEAMGLSGHKLSFFFDGTKLSGKELPADLGLESGDLIEVWG 79 (79)
T ss_dssp TCCCCEEEEEECSSTTCEEEEEECTTSCHHHHHHHHHHHHTCTTCCCEEEETTEECCSCCCHHHHTCCTTCEEEEEC
T ss_pred CCCCEEEEEEEeCCCCEEEEEEECCCChHHHHHHHHHHHhCCCcccEEEEECCEEcCCCCCHHHcCCCCCCEEEEeC
Confidence 345679999996 45 4788999999999999999999999999999999999999999999999999999999874
No 98
>2xzm_9 RPS31E; ribosome, translation; 3.93A {Tetrahymena thermophila} PDB: 2xzn_9
Probab=98.93 E-value=1.1e-10 Score=106.27 Aligned_cols=64 Identities=14% Similarity=0.144 Sum_probs=0.0
Q ss_pred EEEEEe-CCEEEEEEEcCCCCHHHHHHHHhcccCCCccCcEEeccCcccCCchhhhhcCCCCCCEEEEee
Q 018493 57 RVRVKY-GSIYHEIHINSQATFGELKKLLTGPTGLHHEDQKLIYKDKERDSKAFLDVVGVKDKSKLVLVE 125 (355)
Q Consensus 57 ~V~VK~-gg~~~~V~V~~~sTVgdLK~~I~e~TGVppe~QKLIykGK~ldD~~tLs~~GIKdgSkImLv~ 125 (355)
.|.|+. .+.++.|+|++++||.+||.+|++.+|||+++|+|||.|++|+|+.+|+ ++|+|+|+.
T Consensus 2 qI~VKtL~GktitLeV~~sdTV~~LK~kI~~keGIP~~qQRLIf~GK~LeD~~TLs-----~~STLhLvl 66 (189)
T 2xzm_9 2 QVQVKTLEGETKIYTLEQGTSVLDLKSQISQDMGFEIDMMTLVNNGFIAPNTELVT-----DDVTYYLSL 66 (189)
T ss_dssp ----------------------------------------------------------------------
T ss_pred EEEEEcCCCCEEEEEECCcChHHHHHHHHHHHhCcChhHEEEEecCeECCCCCccc-----CCCEEEEEE
Confidence 466665 4678899999999999999999999999999999999999999999999 999999984
No 99
>2io0_B Small ubiquitin-related modifier 2 precursor; SUMO, SENP, ULP, complex, protein binding, hydrolase; 2.30A {Homo sapiens} SCOP: d.15.1.1
Probab=98.89 E-value=3.4e-09 Score=85.49 Aligned_cols=74 Identities=11% Similarity=0.193 Sum_probs=67.8
Q ss_pred CCCeeEEEEEe-CCEEEEEEEcCCCCHHHHHHHHhcccCCCccCcEEeccCcccCCchhhhhcCCCCCCEEEEee
Q 018493 52 PPPTIRVRVKY-GSIYHEIHINSQATFGELKKLLTGPTGLHHEDQKLIYKDKERDSKAFLDVVGVKDKSKLVLVE 125 (355)
Q Consensus 52 ~~~~I~V~VK~-gg~~~~V~V~~~sTVgdLK~~I~e~TGVppe~QKLIykGK~ldD~~tLs~~GIKdgSkImLv~ 125 (355)
+...|+|+|+. .+..+.+.|.+++++..|+...++..|++++.++|+|.|+.+.++.|+.+|++.+|+.|.++.
T Consensus 2 ~~~~i~ikVk~~~g~~v~~~vk~~t~l~kl~~~y~~~~gi~~~~~rf~FdG~~l~~~~Tp~dl~medgD~Idv~~ 76 (91)
T 2io0_B 2 ANDHINLKVAGQDGSVVQFKIKRHTPLSKLMKAYCERQGLSMRQIRFRFDGQPINETDTPAQLEMEDEDTIDVFQ 76 (91)
T ss_dssp --CEEEEEEECTTSCEEEEEEETTSCTHHHHHHHHHHTTCCSTTEEEEETTEECCTTCCTTTTTCCTTEEEEEEE
T ss_pred CCCeEEEEEECCCCCEEEEEECCCChHHHHHHHHHHHhCCCcccEEEEECCEEcCCCCCHHHcCCCCCCEEEEEE
Confidence 35679999996 567788999999999999999999999999999999999999999999999999999999985
No 100
>1wm3_A Ubiquitin-like protein SMT3B; ubiquitin fold, half-open barrel, two helices, protein transport; 1.20A {Homo sapiens} SCOP: d.15.1.1 PDB: 1wm2_A 3uin_B 3uio_B 2ckh_B
Probab=98.89 E-value=3.5e-09 Score=81.19 Aligned_cols=69 Identities=12% Similarity=0.206 Sum_probs=64.8
Q ss_pred eEEEEEe-CCEEEEEEEcCCCCHHHHHHHHhcccCCCccCcEEeccCcccCCchhhhhcCCCCCCEEEEe
Q 018493 56 IRVRVKY-GSIYHEIHINSQATFGELKKLLTGPTGLHHEDQKLIYKDKERDSKAFLDVVGVKDKSKLVLV 124 (355)
Q Consensus 56 I~V~VK~-gg~~~~V~V~~~sTVgdLK~~I~e~TGVppe~QKLIykGK~ldD~~tLs~~GIKdgSkImLv 124 (355)
|+|+|+. .|..+.+.|.+++++..|+...++..|++++.++|+|.|+.+.++.|..+||+.+|+.|.++
T Consensus 2 i~lkV~~~~g~~v~~~v~~~t~l~kl~~~y~~~~gi~~~~~rf~fdG~~l~~~~Tp~~l~medgD~Idv~ 71 (72)
T 1wm3_A 2 INLKVAGQDGSVVQFKIKRHTPLSKLMKAYCERQGLSMRQIRFRFDGQPINETDTPAQLEMEDEDTIDVF 71 (72)
T ss_dssp EEEEEECTTSCEEEEEECTTSCTHHHHHHHHHHHTCCTTTCEEEETTEECCTTCCTTTTTCCTTEEEEEE
T ss_pred EEEEEECCCCCEEEEEECCCChHHHHHHHHHHHhCCCcceEEEEECCEEcCCCCCHHHcCCCCCCEEEEE
Confidence 7888885 56778899999999999999999999999999999999999999999999999999999885
No 101
>2d07_B Ubiquitin-like protein SMT3B; hydrolase; 2.10A {Homo sapiens} SCOP: d.15.1.1 PDB: 2rpq_A 2awt_A 2io3_B 2iyd_B 1u4a_A 2k1f_A
Probab=98.80 E-value=1.2e-08 Score=82.30 Aligned_cols=74 Identities=11% Similarity=0.187 Sum_probs=67.9
Q ss_pred CCCeeEEEEEe-CCEEEEEEEcCCCCHHHHHHHHhcccCCCccCcEEeccCcccCCchhhhhcCCCCCCEEEEee
Q 018493 52 PPPTIRVRVKY-GSIYHEIHINSQATFGELKKLLTGPTGLHHEDQKLIYKDKERDSKAFLDVVGVKDKSKLVLVE 125 (355)
Q Consensus 52 ~~~~I~V~VK~-gg~~~~V~V~~~sTVgdLK~~I~e~TGVppe~QKLIykGK~ldD~~tLs~~GIKdgSkImLv~ 125 (355)
....|+|+|+. .+..+.+.|.+++++..|+..+++..|++++.++|+|.|+.+.++.|+.+|++.+|+.|.++.
T Consensus 14 ~~~~i~ikV~~~~g~~i~~~v~~~t~l~kl~~~y~~~~gi~~~~~rf~fdG~~l~~~~Tp~dl~medgD~Idv~~ 88 (93)
T 2d07_B 14 NNDHINLKVAGQDGSVVQFKIKRHTPLSKLMKAYCERQGLSMRQIRFRFDGQPINETDTPAQLEMEDEDTIDVFQ 88 (93)
T ss_dssp -CCEEEEEEECTTSCEEEEEEETTSCHHHHHHHHHHHHTCCGGGEEEEETTEECCTTCCTTTTTCCTTEEEEEEE
T ss_pred CCCeEEEEEECCCCCEEEEEEccCCHHHHHHHHHHHHhCCCccceEEEECCEEcCCCCCHHHcCCCCCCEEEEEe
Confidence 35679999996 556788999999999999999999999999999999999999999999999999999999975
No 102
>1wz0_A Ubiquitin-like protein SMT3B; SUMO-2, ubiquitin-like molecule, structural genomics, sentrin2, NPPFSA; NMR {Homo sapiens} SCOP: d.15.1.1
Probab=98.78 E-value=1.5e-08 Score=83.82 Aligned_cols=74 Identities=11% Similarity=0.187 Sum_probs=68.3
Q ss_pred CCCeeEEEEEe-CCEEEEEEEcCCCCHHHHHHHHhcccCCCccCcEEeccCcccCCchhhhhcCCCCCCEEEEee
Q 018493 52 PPPTIRVRVKY-GSIYHEIHINSQATFGELKKLLTGPTGLHHEDQKLIYKDKERDSKAFLDVVGVKDKSKLVLVE 125 (355)
Q Consensus 52 ~~~~I~V~VK~-gg~~~~V~V~~~sTVgdLK~~I~e~TGVppe~QKLIykGK~ldD~~tLs~~GIKdgSkImLv~ 125 (355)
....|+|+|+. .+..+.+.|.+++++..|+..+++..|++++.++|+|.|+.+.++.|+.+|++.+|++|.|+.
T Consensus 21 ~~~~I~IkVk~~~g~~i~~kVk~~t~l~kL~~~y~ek~gi~~~~~rf~FdG~~l~~~~Tp~dl~medgD~Idv~~ 95 (104)
T 1wz0_A 21 NNDHINLKVAGQDGSVVQFKIKRHTPLSKLMKAYCERQGLSMRQIRFRFDGQPINETDTPAQLEMEDEDTIDVFQ 95 (104)
T ss_dssp CSCCEEEEEECSSSCEEEEEECTTSCHHHHHHHHHHHHTCCTTTSCEESSSSBCCTTSCTTTTTCCTTEEEEECC
T ss_pred CCCeEEEEEECCCCCEEEEEEcCCChHHHHHHHHHHHhCCCcceEEEEECCEEcCCCCCHHHcCCCCCCEEEEEE
Confidence 34679999996 566788999999999999999999999999999999999999999999999999999999984
No 103
>2eke_C Ubiquitin-like protein SMT3; UBC9, SUMO binding motif, SBM, ligase/protein binding complex; 1.90A {Saccharomyces cerevisiae} SCOP: d.15.1.1
Probab=98.77 E-value=2e-08 Score=83.46 Aligned_cols=74 Identities=14% Similarity=0.217 Sum_probs=68.6
Q ss_pred CCCeeEEEEEeCCEEEEEEEcCCCCHHHHHHHHhcccCCCccCcEEeccCcccCCchhhhhcCCCCCCEEEEee
Q 018493 52 PPPTIRVRVKYGSIYHEIHINSQATFGELKKLLTGPTGLHHEDQKLIYKDKERDSKAFLDVVGVKDKSKLVLVE 125 (355)
Q Consensus 52 ~~~~I~V~VK~gg~~~~V~V~~~sTVgdLK~~I~e~TGVppe~QKLIykGK~ldD~~tLs~~GIKdgSkImLv~ 125 (355)
....|+|+|+..+..+.+.|..++++..|+..+++..|++++.++|+|.|+.+.++.|..+|++.+|++|.|+.
T Consensus 28 ~~~~I~IkV~~~g~~i~fkIk~tt~l~kL~~ay~ek~gi~~~~~rF~FdG~rl~~~~Tp~dl~medgD~Idv~~ 101 (106)
T 2eke_C 28 PETHINLKVSDGSSEIFFKIKKTTPLRRLMEAFAKRQGKEMDSLRFLYDGIRIQADQTPEDLDMEDNDIIEAHR 101 (106)
T ss_dssp CCSEEEEEEECSSCEEEEEEETTSCTHHHHHHHHHHHTCCGGGEEEEETTEECCTTCCTTTTTCCTTEEEEEEE
T ss_pred CCCeEEEEEecCCcEEEEEeCCCCHHHHHHHHHHHHhCCCcccEEEEECCeEcCCCCCHHHcCCCCCCEEEEEe
Confidence 45679999998667788999999999999999999999999999999999999999999999999999999875
No 104
>2k8h_A Small ubiquitin protein; SUMO, post-translational modifier, signaling protein; NMR {Trypanosoma brucei}
Probab=98.73 E-value=2.7e-08 Score=83.11 Aligned_cols=75 Identities=12% Similarity=0.219 Sum_probs=68.8
Q ss_pred CCCeeEEEEEe-CCEEEEEEEcCCCCHHHHHHHHhcccCCCccCcEEeccCcccCCchhhhhcCCCCCCEEEEeec
Q 018493 52 PPPTIRVRVKY-GSIYHEIHINSQATFGELKKLLTGPTGLHHEDQKLIYKDKERDSKAFLDVVGVKDKSKLVLVED 126 (355)
Q Consensus 52 ~~~~I~V~VK~-gg~~~~V~V~~~sTVgdLK~~I~e~TGVppe~QKLIykGK~ldD~~tLs~~GIKdgSkImLv~~ 126 (355)
....|+|+|+. .+..+.+.|.+++++..|+..+++..|++++.++|+|.|+.+.++.|+.+|++.+|++|.|+..
T Consensus 23 ~~~~I~IkVk~~~g~~i~fkVk~~t~l~kL~~ay~ek~gi~~~~~rfiFdG~~L~~~~Tp~dl~mEDgD~Idv~~~ 98 (110)
T 2k8h_A 23 ETALVAVKVVNADGAEMFFRIKSRTALKKLIDTYCKKQGISRNSVRFLFDGTPIDETKTPEELGMEDDDVIDAMVE 98 (110)
T ss_dssp CCCCEEEEEEETTSCCEEEEECTTSSHHHHHHHHHHHHTCCSSSCEEESSSCBCCSSSHHHHHHCSSEEEEEEECC
T ss_pred CCCeEEEEEECCCCCEEEEEECCCChHHHHHHHHHHHhCCCcccEEEEECCEEcCCCCCHHHcCCCCCCEEEEEEc
Confidence 44679999996 4567889999999999999999999999999999999999999999999999999999999853
No 105
>2pjh_A Protein NPL4, nuclear protein localization protein 4 homolog; UFD1, NPL4, AAA, protein binding, transport protein; NMR {Mus musculus}
Probab=98.40 E-value=1.8e-07 Score=73.60 Aligned_cols=69 Identities=17% Similarity=0.207 Sum_probs=57.2
Q ss_pred eEEEEEeCCEEEEEEEcCCCCHHHHHHHHhcccCCCccCcEEeccCcc-----cCCchhhhhcCCCCCCEEEEe
Q 018493 56 IRVRVKYGSIYHEIHINSQATFGELKKLLTGPTGLHHEDQKLIYKDKE-----RDSKAFLDVVGVKDKSKLVLV 124 (355)
Q Consensus 56 I~V~VK~gg~~~~V~V~~~sTVgdLK~~I~e~TGVppe~QKLIykGK~-----ldD~~tLs~~GIKdgSkImLv 124 (355)
+.|+|+.....+-|++++++||++|++.|++.++++++.|.|.+.-.. ..++.+|+++||++|+.|+|.
T Consensus 5 m~lRvrs~~G~~Ri~v~~~~t~~~L~~~I~~~~~i~~~~~~l~~~~~p~~~l~~~~~~~l~~lgl~hGd~l~l~ 78 (80)
T 2pjh_A 5 IIIRVQSPDGVKRITATKRETAATFLKKVAKEFGFQNNGFSVYINRNKTGEITASSSKSLHLLKIKHGDLLFLF 78 (80)
T ss_dssp CCCEEECSSEEEECCCCSSCCHHHHHHHHHHHTCCCTTTCCCCCSCCGGGGSSSCCCCTTTTTCCCTTCCEEC-
T ss_pred EEEEEECCCCCEEEEcCCcChHHHHHHHHHHHcCCCCCcceEEecCCCCCcccCCCCCCHHHcCCCCCCEEEEe
Confidence 667777766678888999999999999999999999998887654332 347789999999999999874
No 106
>3kyd_D Small ubiquitin-related modifier 1; SUMO, thioester, adenylation, inhibitor, TETR intermediate, ligase, nucleus, phosphoprotein; HET: VMX; 2.61A {Homo sapiens} SCOP: d.15.1.1
Probab=98.33 E-value=1.2e-06 Score=73.86 Aligned_cols=91 Identities=12% Similarity=0.204 Sum_probs=66.9
Q ss_pred CceEEEeecCCC-CC-CCCCCCeeEEEEEe-CCEEEEEEEcCCCCHHHHHHHHhcccCCCccCcEEeccCcccCCchhhh
Q 018493 35 GGMLVQKRNPDS-DR-TSAPPPTIRVRVKY-GSIYHEIHINSQATFGELKKLLTGPTGLHHEDQKLIYKDKERDSKAFLD 111 (355)
Q Consensus 35 ggmlvqkR~~~~-~~-~~~~~~~I~V~VK~-gg~~~~V~V~~~sTVgdLK~~I~e~TGVppe~QKLIykGK~ldD~~tLs 111 (355)
|-|..+.-..+. +. .......|+|+|+. .+....+.|..++++..|+...++..|++++.++|+|.|+.+.++.|..
T Consensus 18 ~~~~~~~~~~~~~~~~~k~~~~~I~LKV~~qdg~ev~fkIk~tt~L~KLm~aY~er~Gl~~~~irFlFDG~rI~~~~TP~ 97 (115)
T 3kyd_D 18 SHMSDQEAKPSTEDLGDKKEGEYIKLKVIGQDSSEIHFKVKMTTHLKKLKESYCQRQGVPMNSLRFLFEGQRIADNHTPK 97 (115)
T ss_dssp ---------------------CEEEEEEECTTSCEEEEEEETTSCTHHHHHHHHHHHTCCTTSEEEEETTEECCTTCCTT
T ss_pred CccccccccCccccccCCCCCCeEEEEEEcCCCCEEEEEEccCChHHHHHHHHHHHhCCChhhEEEEECCeECCCCCCHH
Confidence 445555544322 11 12335679999996 4566788999999999999999999999999999999999999999999
Q ss_pred hcCCCCCCEEEEee
Q 018493 112 VVGVKDKSKLVLVE 125 (355)
Q Consensus 112 ~~GIKdgSkImLv~ 125 (355)
++++.+|++|.++.
T Consensus 98 dL~MEDgD~IdV~~ 111 (115)
T 3kyd_D 98 ELGMEEEDVIEVYQ 111 (115)
T ss_dssp TTTCCTTCEEEEEE
T ss_pred HcCCCCCCEEEEEe
Confidence 99999999999875
No 107
>3pge_A SUMO-modified proliferating cell nuclear antigen; DNA replication, DNA binding protein; 2.80A {Saccharomyces cerevisiae}
Probab=98.26 E-value=1.4e-06 Score=79.71 Aligned_cols=74 Identities=14% Similarity=0.217 Sum_probs=69.2
Q ss_pred CCCeeEEEEEeCCEEEEEEEcCCCCHHHHHHHHhcccCCCccCcEEeccCcccCCchhhhhcCCCCCCEEEEee
Q 018493 52 PPPTIRVRVKYGSIYHEIHINSQATFGELKKLLTGPTGLHHEDQKLIYKDKERDSKAFLDVVGVKDKSKLVLVE 125 (355)
Q Consensus 52 ~~~~I~V~VK~gg~~~~V~V~~~sTVgdLK~~I~e~TGVppe~QKLIykGK~ldD~~tLs~~GIKdgSkImLv~ 125 (355)
+...|+|+|+..+..+.+.|..++++..|+...+++.|++++++||+|.|+.+.++.|..++|+.+|++|.++.
T Consensus 26 ~~~~I~LkV~~~g~~v~fkIk~~t~l~kL~~ay~er~Gi~~~~~RF~FdG~rI~~~~TP~dL~MEdgD~Idv~~ 99 (200)
T 3pge_A 26 PETHINLKVSDGSSEIFFKIKKTTPLRRLMEAFAKRQGKEMDSLRFLYDGIRIQADQTPEDLDMEDNDIIEAHR 99 (200)
T ss_dssp CCCCEEEEEECSSCEEEEEECTTSCTHHHHHHHHHHHSSCGGGEEEEETTEECCTTCCTTTTTCCTTEEEEEEE
T ss_pred CCCeEEEEEecCCCEEEEEEecCCHHHHHHHHHHHHhCCChhhEEEEECCEEcCCCCCHHHcCCCCCCEEEEEe
Confidence 35679999987778889999999999999999999999999999999999999999999999999999999883
No 108
>3tix_A Ubiquitin-like protein SMT3, RNA-induced transcri silencing complex protein TAS3; PIN, rossmann fold, SPOC, alpha-helical hairpin, heterochrom silencing, RITS, RNAI, argonaute; 2.90A {Saccharomyces cerevisiae}
Probab=98.19 E-value=2.2e-06 Score=78.50 Aligned_cols=73 Identities=14% Similarity=0.188 Sum_probs=68.8
Q ss_pred CCeeEEEEEeCCEEEEEEEcCCCCHHHHHHHHhcccCCCccCcEEeccCcccCCchhhhhcCCCCCCEEEEee
Q 018493 53 PPTIRVRVKYGSIYHEIHINSQATFGELKKLLTGPTGLHHEDQKLIYKDKERDSKAFLDVVGVKDKSKLVLVE 125 (355)
Q Consensus 53 ~~~I~V~VK~gg~~~~V~V~~~sTVgdLK~~I~e~TGVppe~QKLIykGK~ldD~~tLs~~GIKdgSkImLv~ 125 (355)
...|+|+|+..+..+.+.|..++++..|++..++..|+++..++|+|.|+.+.++.|..++++.||++|.++.
T Consensus 55 ~e~InLKVk~dG~eV~FKIKrtTpL~KLmeAYcERqGL~~~sIRFLFDGqRI~~ddTPeDLdMEDGDtIDV~l 127 (207)
T 3tix_A 55 ETHINLKVSDGSSEIFFKIKKTTPLRRLMEAFAKRQGKEMDSLTFLYDGIEIQADQTPEDLDMEDNDIIEAHR 127 (207)
T ss_dssp CCEEEEEEECSSCEEEEEEETTSCTHHHHHHHHHHTTCCGGGSCEEETTEECCSSCCTTTTTCCTTEEEEECC
T ss_pred CCcEEEEEecCCCEEEEEEccCChHHHHHHHHHHHhCCCcccEEEEECCeecCCCCCHHHcCCCCCCEEEEEE
Confidence 4569999987778889999999999999999999999999999999999999999999999999999999984
No 109
>4efo_A Serine/threonine-protein kinase TBK1; ubiquitin like domain, transferase; 1.77A {Homo sapiens}
Probab=98.16 E-value=3.6e-06 Score=68.76 Aligned_cols=70 Identities=20% Similarity=0.233 Sum_probs=56.5
Q ss_pred eEEEEEeCCEEEEEEEcCCCCHHHHHHHHhcccCCCccCcEEeccCcc--cCCchhhhhcCC-CCCCEEEEee
Q 018493 56 IRVRVKYGSIYHEIHINSQATFGELKKLLTGPTGLHHEDQKLIYKDKE--RDSKAFLDVVGV-KDKSKLVLVE 125 (355)
Q Consensus 56 I~V~VK~gg~~~~V~V~~~sTVgdLK~~I~e~TGVppe~QKLIykGK~--ldD~~tLs~~GI-KdgSkImLv~ 125 (355)
|.|.-...+..|.|.|.++.|+..||++|++.||||+.+|+|||.|+. ++.+.+-..|-- .....|+|+.
T Consensus 15 vHVf~~~~a~~h~v~I~~~etv~~~ke~V~eqTgIp~~~Q~LL~eg~~l~l~p~~~a~~~p~Tt~~~Pl~L~s 87 (94)
T 4efo_A 15 IHVFSLQQMTAHKIYIHSYNTATIFHELVYKQTKIISSNQELIYEGRRLVLEPGRLAQHFPKTTEENPIFVVS 87 (94)
T ss_dssp EEEEETTTTEEEEEEEETTCBHHHHHHHHHHHHCCCGGGEEEEETTEEECCCTTCBGGGSCCCBTTBCEEEEE
T ss_pred EEEEEcccceEEEEEeccchHHHHHHHHHHHHhCCCHHHHHHHhCCCccccCCCCccccCCCCCCCCCEEEEe
Confidence 444444578899999999999999999999999999999999999986 677777666644 3345677765
No 110
>2d9d_A BAG family molecular chaperone regulator 5; triple helix bundle, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=97.90 E-value=2.3e-05 Score=62.59 Aligned_cols=69 Identities=14% Similarity=0.194 Sum_probs=55.0
Q ss_pred hHHHHHHHHHHhhhhHHHHHHHHHhCCCcchhhHhhHHHHHHHHHHhccCCCCCh--hhHHHHHHHHHHHHHHHHHHHH
Q 018493 149 SISEISLEVDRLAGQVSALESIITKGGKVAEKDVLNLIELLMNQLLKLDGIMADG--DVKLQRKMQVRRVQKYVETLDM 225 (355)
Q Consensus 149 aIs~V~~eVDkLa~ev~~LE~~I~~g~Kv~eke~~~LsE~LMq~LLKLD~IeaeG--daR~qRK~~VkrVQ~~Le~LD~ 225 (355)
.|.+|+..+-.|..++..+. ++ .+.|..+.|.|-+.++.||.|+++| ++|..||.+|++||.+..-||-
T Consensus 11 ~Ie~v~~r~r~l~~ell~~~-----~~---s~~yl~~k~eLq~Li~~LDev~~~~NpcIReaRRrAV~EvQ~lit~lDl 81 (89)
T 2d9d_A 11 KIEKVLKRMREIKNELLQAQ-----NP---SELYLSSKTELQGLIGQLDEVSLEKNPCIREARRRAVIEVQTLITYIDL 81 (89)
T ss_dssp HHHHHHHHHHHHHHHHHHCS-----CT---TTHHHHHHHHHHHHHHHHGGGCSCSSHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHhc-----Cc---hHHHhhhHHHHHHHHHHHhhcccCCChHHHHHHHHHHHHHHHHHHHHHH
Confidence 45555555555554444331 11 7889999999999999999999998 7999999999999999999993
No 111
>3v7o_A Minor nucleoprotein VP30; ssgcid, seattle structural genomics center for infectious disease, SMT, transcription; 2.25A {Reston ebolavirus}
Probab=97.72 E-value=4.5e-06 Score=77.40 Aligned_cols=74 Identities=14% Similarity=0.217 Sum_probs=0.0
Q ss_pred CCCeeEEEEEeCCEEEEEEEcCCCCHHHHHHHHhcccCCCccCcEEeccCcccCCchhhhhcCCCCCCEEEEee
Q 018493 52 PPPTIRVRVKYGSIYHEIHINSQATFGELKKLLTGPTGLHHEDQKLIYKDKERDSKAFLDVVGVKDKSKLVLVE 125 (355)
Q Consensus 52 ~~~~I~V~VK~gg~~~~V~V~~~sTVgdLK~~I~e~TGVppe~QKLIykGK~ldD~~tLs~~GIKdgSkImLv~ 125 (355)
+...|+|+|...+....+.|..++.+..|++..+++.|++++.+|++|.|+.+.++.|..++++.||++|.++.
T Consensus 18 p~e~InLKV~qdGseV~FKIKrtTpL~KLM~AYcERqGLs~~siRFLFDGqRI~dddTPadL~MEDGDtIDV~l 91 (227)
T 3v7o_A 18 PETHINLKVSDGSSEIFFKIKKTTPLRRLMEAFAKRQGKEMDSLRFLYDGIRIQADQTPEDLDMEDNDIIEAHR 91 (227)
T ss_dssp --------------------------------------------------------------------------
T ss_pred CCCeEEEEEeCCCCEEEEEEccCChHHHHHHHHHHHhCCCccceEEEECCEecCCCCCHHHcCCCCCCEEEEEe
Confidence 34568888866667788899999999999999999999999999999999999999999999999999999874
No 112
>2jxx_A Nfatc2-interacting protein; nuclear factor of activated T-cells, cytoplasmic 2- interacting protein, ubiquitin like homologue; NMR {Homo sapiens}
Probab=97.71 E-value=0.00014 Score=59.50 Aligned_cols=74 Identities=9% Similarity=0.194 Sum_probs=66.5
Q ss_pred CCCeeEEEEEe-CC-EEEEEEEcCCCCHHHHHHHHhcccCCCccCcEEeccCcccCCchhhhhcCCCCCCEEEEee
Q 018493 52 PPPTIRVRVKY-GS-IYHEIHINSQATFGELKKLLTGPTGLHHEDQKLIYKDKERDSKAFLDVVGVKDKSKLVLVE 125 (355)
Q Consensus 52 ~~~~I~V~VK~-gg-~~~~V~V~~~sTVgdLK~~I~e~TGVppe~QKLIykGK~ldD~~tLs~~GIKdgSkImLv~ 125 (355)
....|+|+|+. .+ ....+.|..++++.-|....++..|++++..+++|.|..+.++.|..++++.+|+.|-+++
T Consensus 22 ~~~~I~LkV~~~dg~~~v~fkIk~~t~l~kLm~aY~~~~g~~~~~vrF~FDG~rI~~~~TP~dLdMEDgD~IDv~~ 97 (97)
T 2jxx_A 22 TSQQLQLRVQGKEKHQTLEVSLSRDSPLKTLMSHYEEAMGLSGRKLSFFFDGTKLSGRELPADLGMESGDLIEVWG 97 (97)
T ss_dssp SCSEEEEEEEESSSSCEEEEEEETTSCHHHHHHHHHHHTTCSSSCCEEEETTEECCSCSCHHHHTCCTTEEEEEEC
T ss_pred CCCeEEEEEEcCCCCEEEEEEECCCChHHHHHHHHHHHHCCCcccEEEEECCEEcCCCCCHHHcCCCCCCEEEEeC
Confidence 45679999986 34 4678899999999999999999999999999999999999999999999999999998763
No 113
>2bps_A YUKD protein; ubiquitin-like protein, ubiquitin; 2.7A {Bacillus subtilis}
Probab=97.57 E-value=0.00011 Score=58.31 Aligned_cols=70 Identities=11% Similarity=0.228 Sum_probs=60.8
Q ss_pred eeEEEEE---eCCEEEEEEEcCCCCHHHHHHHHhcccCCCc-----cCcEEeccCcccCCchhhhhcCCCCCCEEEEe
Q 018493 55 TIRVRVK---YGSIYHEIHINSQATFGELKKLLTGPTGLHH-----EDQKLIYKDKERDSKAFLDVVGVKDKSKLVLV 124 (355)
Q Consensus 55 ~I~V~VK---~gg~~~~V~V~~~sTVgdLK~~I~e~TGVpp-----e~QKLIykGK~ldD~~tLs~~GIKdgSkImLv 124 (355)
-|.|++- |.++.|++.||...||..|.+.|.+..+++. -..|+.-||..+.++..|.+|||++||.|-++
T Consensus 4 yI~ITidl~~y~~~~~DLRIP~~~tvK~Li~~l~ea~~l~~~~~~~~~irv~NK~~~L~~~~~L~d~~ItnGD~Leil 81 (81)
T 2bps_A 4 YIDITIDLKHYNGSVFDLRLSDYHPVKKVIDIAWQAQSVSMPPREGHWIRVVNKDKVFSGECKLSDCGITNGDRLEIL 81 (81)
T ss_dssp EEEEEEECTTTTCCEEEEEEETTSBTTHHHHHHHHHSCCCSCCCTTCEEEEGGGTEEEETTSBTGGGTCCTTCEEEEC
T ss_pred EEEEEEEeeccCCceEEEECCCchhHHHHHHHHHHHhCCCcCCCCCCEEEEecCCEEEcCCCEEeeCCcCCCCEEEEC
Confidence 3566666 5889999999999999999999999999885 24678899999999999999999999998753
No 114
>3uf8_A Ubiquitin-like protein SMT3, peptidyl-prolyl CIS- isomerase; ssgcid, seattle structural genomics center for in disease; HET: FK5; 1.50A {Burkholderia pseudomallei} PDB: 4ggq_C* 3vaw_A* 3uqa_A* 4g50_A* 4fn2_A* 3uqb_A* 4giv_A* 1euv_B 3v60_A 3v61_A 3v62_A*
Probab=97.46 E-value=0.00022 Score=64.93 Aligned_cols=75 Identities=13% Similarity=0.226 Sum_probs=69.0
Q ss_pred CCCeeEEEEEeCCEEEEEEEcCCCCHHHHHHHHhcccCCCccCcEEeccCcccCCchhhhhcCCCCCCEEEEeec
Q 018493 52 PPPTIRVRVKYGSIYHEIHINSQATFGELKKLLTGPTGLHHEDQKLIYKDKERDSKAFLDVVGVKDKSKLVLVED 126 (355)
Q Consensus 52 ~~~~I~V~VK~gg~~~~V~V~~~sTVgdLK~~I~e~TGVppe~QKLIykGK~ldD~~tLs~~GIKdgSkImLv~~ 126 (355)
+...|+|+|+..+..+.+.|..++++.-|+...++..|+++++++|+|.|+.+.++.+-.++.+.+++.|-+...
T Consensus 18 ~~~~i~ikv~~~~~~v~~~i~~~~~l~kl~~~y~~~~g~~~~~~~f~fdG~~i~~~~Tpk~L~~ed~d~I~~~~e 92 (209)
T 3uf8_A 18 PETHINLKVSDGSSEIFFKIKKTTPLRRLMEAFAKRQGKEMDSLRFLYDGIRIQADQTPEDLDMEDNDIIEAHRE 92 (209)
T ss_dssp CCSEEEEEEECSSCEEEEEEETTSCTHHHHHHHHHHHTCCGGGCEEEETTEECCTTCCTTTTTCCTTEEEEEECS
T ss_pred CCCcEEEEEEcCCCEEEEEEeeCCHHHHHHHHHHHhhCCChheEEEEECCEeccCCCChHHhhhcccccchhhcc
Confidence 456799999976677789999999999999999999999999999999999999999999999999999988853
No 115
>2l76_A Nfatc2-interacting protein; ubiquitin-like domain, structural genomics, PSI-biology, Pro structure initiative; NMR {Homo sapiens}
Probab=97.44 E-value=0.00052 Score=56.14 Aligned_cols=74 Identities=8% Similarity=0.104 Sum_probs=68.2
Q ss_pred CCeeEEEEEeCCEEEEEEEcCCCCHHHHHHHHhcccCCCccCcEEeccCcccCCchhhhhcCCCCCCEEEEeec
Q 018493 53 PPTIRVRVKYGSIYHEIHINSQATFGELKKLLTGPTGLHHEDQKLIYKDKERDSKAFLDVVGVKDKSKLVLVED 126 (355)
Q Consensus 53 ~~~I~V~VK~gg~~~~V~V~~~sTVgdLK~~I~e~TGVppe~QKLIykGK~ldD~~tLs~~GIKdgSkImLv~~ 126 (355)
...|+|+|+.++....+.|-.++.+.-|.+..+++.|+++...+++|.|..+.++.|-.++|+.+|+.|-++.-
T Consensus 19 ~~~IniKV~~~g~ev~FkIK~tt~l~KL~~aYc~r~gv~~~sirFlfDG~rI~~~~TP~~L~meD~DiID~~~~ 92 (95)
T 2l76_A 19 PRLFPLKIRCRADLVRLPLRMSEPLQSVVDHMATHLGVSPSRILLLFGETELSPTATPRTLKLGVADIIDCVVL 92 (95)
T ss_dssp CCCEEEEEECSSSEEEEEECSSSCTHHHHHHHHHHHTSCGGGEEEEETTEECCTTSCHHHHTCCSSCEEEEEEC
T ss_pred CCeEEEEEEcCCcEEEEEEecCChHHHHHHHHHhhcCCChhhEEEEECCcCCCCCCCHhHcCCCCCCEEEEEEe
Confidence 34599999988888889999999999999999999999999999999999999999999999999999987753
No 116
>3goe_A DNA repair protein RAD60; SUMO-like domain, sumoylation, SUMO, genome stability, DNA damage, DNA recombination, nucleus; HET: DNA; 0.97A {Schizosaccharomyces pombe} PDB: 3rcz_A*
Probab=97.40 E-value=0.00058 Score=54.26 Aligned_cols=72 Identities=14% Similarity=0.144 Sum_probs=63.4
Q ss_pred CeeEEEEEeC-CEEEEEEEcCCCCHHHHHHHHhcccCCCcc-CcEEeccCcccCCchhhhhcCCCCCCEEEEee
Q 018493 54 PTIRVRVKYG-SIYHEIHINSQATFGELKKLLTGPTGLHHE-DQKLIYKDKERDSKAFLDVVGVKDKSKLVLVE 125 (355)
Q Consensus 54 ~~I~V~VK~g-g~~~~V~V~~~sTVgdLK~~I~e~TGVppe-~QKLIykGK~ldD~~tLs~~GIKdgSkImLv~ 125 (355)
..|++..... +.-..+.|+.+++|..|-+.-+.+-||+++ ..+|+|-|..++.+.++.+|++.||+.|-+|-
T Consensus 8 ~~~~~~~~~~~~~dl~f~I~~~t~v~kLi~ayc~~~~I~~~~~IrllFDGdRLdp~~tp~DlemeD~D~IDvmL 81 (82)
T 3goe_A 8 KLITLLLRSSKSEDLRLSIPVDFTVKDLIKRYCTEVKISFHERIRLEFEGEWLDPNDQVQSTELEDEDQVSVVL 81 (82)
T ss_dssp CEEEEEEEESSSCCEEEEEETTSBHHHHHHHHHHHHTCCCCTTCEEEETTEECCTTSBGGGSSCCTTCEEEEEC
T ss_pred HHHHHhhhccCCCCeEEEecCCCCHHHHHHHHHHHcCCCcCceEEEEEcCcccCccCChhhhCCcCCceeeeee
Confidence 3466666653 355778899999999999999999999999 99999999999999999999999999998764
No 117
>3ix6_A TS, tsase, thymidylate synthase; niaid, ssgcid, seattle structural center for infectious DISE brucellosis, orchitis, epididymitis, mastitis; 2.20A {Brucella melitensis}
Probab=97.37 E-value=2.7e-05 Score=77.01 Aligned_cols=75 Identities=13% Similarity=0.226 Sum_probs=0.0
Q ss_pred CCCeeEEEEEeCCEEEEEEEcCCCCHHHHHHHHhcccCCCccCcEEeccCcccCCchhhhhcCCCCCCEEEEeec
Q 018493 52 PPPTIRVRVKYGSIYHEIHINSQATFGELKKLLTGPTGLHHEDQKLIYKDKERDSKAFLDVVGVKDKSKLVLVED 126 (355)
Q Consensus 52 ~~~~I~V~VK~gg~~~~V~V~~~sTVgdLK~~I~e~TGVppe~QKLIykGK~ldD~~tLs~~GIKdgSkImLv~~ 126 (355)
+...|+|+|+..+....+.|..++++..|++..++..|++++.++++|.|+.+.++.|..++|+.+|+.|.++..
T Consensus 18 ~~~~I~LKV~~~g~~v~FkIk~~t~l~kLm~aY~~r~G~~~~~~rFlFdG~rI~~~~TP~~L~MEDgD~Idv~~~ 92 (360)
T 3ix6_A 18 PETHINLKVSDGSSEIFFKIKKTTPLRRLMEAFAKRQGKEMDSLRFLYDGIRIQADQTPEDLDMEDNDIIEAHRE 92 (360)
T ss_dssp ---------------------------------------------------------------------------
T ss_pred CCCeEEEEEecCCcEEEEEEecCChHHHHHHHHHHHhCCCcceEEEEECCeECCCCCChHHcCCCccchhhhhhc
Confidence 456799999887777788999999999999999999999999999999999999999999999999999999854
No 118
>4da1_A Protein phosphatase 1K, mitochondrial; metal-ION-assisted catalysis, dehydrogenase phosphatase, hydrolase; 2.38A {Homo sapiens} PDB: 3qht_A 1l2n_A
Probab=97.17 E-value=5.8e-05 Score=74.00 Aligned_cols=73 Identities=12% Similarity=0.185 Sum_probs=0.0
Q ss_pred CCeeEEEEEeCCEEEEEEEcCCCCHHHHHHHHhcccCCCccCcEEeccCcccCCchhhhhcCCCCCCEEEEee
Q 018493 53 PPTIRVRVKYGSIYHEIHINSQATFGELKKLLTGPTGLHHEDQKLIYKDKERDSKAFLDVVGVKDKSKLVLVE 125 (355)
Q Consensus 53 ~~~I~V~VK~gg~~~~V~V~~~sTVgdLK~~I~e~TGVppe~QKLIykGK~ldD~~tLs~~GIKdgSkImLv~ 125 (355)
...|+|+|+..+....+.|..++++..|++..+++.|+++..++++|.|+.+.++.|-.++|+.+|+.|.++.
T Consensus 28 ~~~i~lkv~~~~~~~~~~i~~~~~~~~l~~~y~~~~g~~~~~~~f~f~G~~i~~~~Tp~~l~med~d~i~~~~ 100 (389)
T 4da1_A 28 ETHINLKVSDGSSEIFFKIKKTTPLRRLMEAFAKRQGKEMDSLRFLYDGIRIQADQAPEDLDMEDNDIIEAHR 100 (389)
T ss_dssp -------------------------------------------------------------------------
T ss_pred CCcEEEEEecCCcEEEEEECCCChHHHHHHHHHHHhCCCcceEEEEECCEEcCCCCCHHHcCCCCCCEeeeee
Confidence 4568999988767778899999999999999999999999999999999999999999999999999998884
No 119
>2al3_A TUG long isoform; TUG UBL1 insulin, endocytosis/exocytosis complex; NMR {Mus musculus} SCOP: d.15.1.2
Probab=97.11 E-value=0.00087 Score=54.30 Aligned_cols=73 Identities=12% Similarity=0.118 Sum_probs=64.8
Q ss_pred EEEEEe-CCEEEEEEEcCCCCHHHHHHHHhcccCCCccCcEEeccCcccCCchhhhhcCCCCCCEEEEeecCCc
Q 018493 57 RVRVKY-GSIYHEIHINSQATFGELKKLLTGPTGLHHEDQKLIYKDKERDSKAFLDVVGVKDKSKLVLVEDPIS 129 (355)
Q Consensus 57 ~V~VK~-gg~~~~V~V~~~sTVgdLK~~I~e~TGVppe~QKLIykGK~ldD~~tLs~~GIKdgSkImLv~~p~s 129 (355)
.|.|-+ ++.++.|.|.+.+++.++-+..+++.|+.+++-.|.|++|.+|-+.+++-.||-+|++|-|+....+
T Consensus 11 ~v~Vl~~n~rr~~VKvtp~t~L~~VL~eaC~K~gl~~~~~~Lkh~~k~lDLSlpfRlsgLpnnAkLELv~~s~s 84 (90)
T 2al3_A 11 AVSVLAPNGRRHTVKVTPSTVLLQVLEDTCRRQDFNPSEYDLKFQRTVLDLSLQWRFANLPNNAKLEMVPVSRS 84 (90)
T ss_dssp CEEEECTTSCEEEECCCTTSBHHHHHHHHHHHTTCCGGGCEEEETTEEESSSCBHHHHCCCSSCEEEEECSSSC
T ss_pred EEEEEcCCCcEEEEEECCCCCHHHHHHHHHHHhCCChhhCeEEeCCEeccccceeEecCCCCCCEEEEEEccCC
Confidence 445553 5678899999999999999999999999999999999999999999999999999999999975443
No 120
>2kc2_A Talin-1, F1; FERM, adhesion, cell membrane, cell projection, cytoplasm, cytoskeleton, membrane, phosphoprotein, structural protein; NMR {Mus musculus}
Probab=96.78 E-value=0.0018 Score=55.48 Aligned_cols=68 Identities=18% Similarity=0.264 Sum_probs=54.7
Q ss_pred EEEEe-CCEEEEEEEcCCCCHHHHHHHHhcccCCCcc-------------------------------------CcEEec
Q 018493 58 VRVKY-GSIYHEIHINSQATFGELKKLLTGPTGLHHE-------------------------------------DQKLIY 99 (355)
Q Consensus 58 V~VK~-gg~~~~V~V~~~sTVgdLK~~I~e~TGVppe-------------------------------------~QKLIy 99 (355)
|+|+- ++....+.|+.+.||++++..|+...||+.. .|||-.
T Consensus 14 LkV~llDg~~ktl~VD~S~~V~~lv~~Ic~kigI~n~~ey~L~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~k~kL~~ 93 (128)
T 2kc2_A 14 LKIRMLDGTVKTIMVDDSKTVTDMLMTICARIGITNHDEYSLVRELMEEKKDEGTGTLRKDKTLLRDEKKMEKLKQKLHT 93 (128)
T ss_dssp EEEECTTSCEEEEEEEECSSHHHHHHHHHHHHTCCCCSSEEEEEECCCCCCCCCSSCCSSSSSCSCCSCCSCSSCCSCCC
T ss_pred EEEEcCCCCEEEEEeCCCcCHHHHHHHHHHHhCCCCcccccccccccccccccCchhhccccccccchhHHHHHHHHhcc
Confidence 45553 5677899999999999999999999999954 455532
Q ss_pred --cCcccCCchhhhhcCCCCCCEEEEee
Q 018493 100 --KDKERDSKAFLDVVGVKDKSKLVLVE 125 (355)
Q Consensus 100 --kGK~ldD~~tLs~~GIKdgSkImLv~ 125 (355)
.+..+|++.+|.++||.++++|+|-.
T Consensus 94 dd~~~WLD~srtL~EQGI~e~~tllLRr 121 (128)
T 2kc2_A 94 DDELNWLDHGRTLREQGVEEHETLLLRR 121 (128)
T ss_dssp SSSEEEECSSSCHHHHTCCTTSEEEEEE
T ss_pred cCCCCcccCCCcHHHcCCCCCCEEEEEE
Confidence 23458999999999999999988743
No 121
>3qx1_A FAS-associated factor 1; UBX, protein binding, P97 binding; 1.60A {Homo sapiens} PDB: 3qwz_B* 3qc8_B 3qca_A 3qq8_B 3r3m_B 1h8c_A
Probab=96.75 E-value=0.0056 Score=47.70 Aligned_cols=73 Identities=15% Similarity=0.263 Sum_probs=59.1
Q ss_pred CCCeeEEEEEe-CCEEEEEEEcCCCCHHHHHHHHhcccCCCccCcEEe--ccCccc---CCchhhhhcCCCCCCEEEEee
Q 018493 52 PPPTIRVRVKY-GSIYHEIHINSQATFGELKKLLTGPTGLHHEDQKLI--YKDKER---DSKAFLDVVGVKDKSKLVLVE 125 (355)
Q Consensus 52 ~~~~I~V~VK~-gg~~~~V~V~~~sTVgdLK~~I~e~TGVppe~QKLI--ykGK~l---dD~~tLs~~GIKdgSkImLv~ 125 (355)
..+..+|.|+. +|....-.++.++||.+|..-|.. .+.++...+|+ |=.|.+ |.+.+|.++|+.+++.|+|-.
T Consensus 4 ~~~~~~i~iRlpdG~r~~~~F~~~~tl~~v~~fv~~-~~~~~~~f~L~t~fPrk~l~~~d~~~TL~e~gL~p~a~L~ve~ 82 (84)
T 3qx1_A 4 MEPVSKLRIRTPSGEFLERRFLASNKLQIVFDFVAS-KGFPWDEYKLLSTFPRRDVTQLDPNKSLLEVKLFPQETLFLEA 82 (84)
T ss_dssp CCCEEEEEEECTTSCEEEEEEETTSBHHHHHHHHHH-TTCCTTTEEEECSSSCCBGGGSCTTSBTTTTTCCSEEEEEEEE
T ss_pred CCCeEEEEEECCCCCEEEEEeCCCCCHHHHHHHHHH-cCCCCCCeEEEeCCCCCCCcCCCCCCCHHHCCCCCCCEEEEEe
Confidence 45777888886 456667789999999999999988 67788888998 556765 567899999999999888754
No 122
>1wj4_A KIAA0794 protein; UBX domain, beta-grAsp fold, structural genomics, riken structural genomics/proteomics initiative, RSGI, unknown function; NMR {Homo sapiens} SCOP: d.15.1.2
Probab=96.59 E-value=0.011 Score=49.90 Aligned_cols=96 Identities=17% Similarity=0.222 Sum_probs=69.9
Q ss_pred cccccceeecCCceEEEeecCCCCCCCCCCCeeEEEEEe-CCEEEEEEEcCCCCHHHHHHHHhcccCCCccCcEEe--cc
Q 018493 24 EAAAHEWELRPGGMLVQKRNPDSDRTSAPPPTIRVRVKY-GSIYHEIHINSQATFGELKKLLTGPTGLHHEDQKLI--YK 100 (355)
Q Consensus 24 ~~~~~~we~rpggmlvqkR~~~~~~~~~~~~~I~V~VK~-gg~~~~V~V~~~sTVgdLK~~I~e~TGVppe~QKLI--yk 100 (355)
......|+..||--.= ..... ....+.++|.|+. .|.+..-.++.++||.+|..-|... |.++....|+ |=
T Consensus 17 ~~~~~~~~~~~~~~~~--~~~~~---d~~~~~t~IqIRlPdG~rl~~rF~~~~tl~~V~~fV~~~-~~~~~~F~L~t~fP 90 (124)
T 1wj4_A 17 AVDSEILEMPPEKADG--VVEGI---DVNGPKAQLMLRYPDGKREQITLPEQAKLLALVKHVQSK-GYPNERFELLTNFP 90 (124)
T ss_dssp CCCCCSCSCCCCCCCC--CCCCC---CCSSCEEEEEEECTTSCEEEEEEETTSCHHHHHHHHHHH-HCCTTTEEEECSSS
T ss_pred ccChhhhhcCCCCCCC--ccccc---CCCCCcEEEEEECCCCCEEEEEeCCCCCHHHHHHHHHhc-CCCCCCeEEecCCC
Confidence 3445789988772210 00000 1235678888886 4667788899999999999999887 7777888887 56
Q ss_pred Cccc---CCchhhhhcCCCCCCEEEEee
Q 018493 101 DKER---DSKAFLDVVGVKDKSKLVLVE 125 (355)
Q Consensus 101 GK~l---dD~~tLs~~GIKdgSkImLv~ 125 (355)
.|.+ +.+.+|.++|+.+...|+|..
T Consensus 91 rk~l~~~d~~~TL~e~gL~psa~Liv~~ 118 (124)
T 1wj4_A 91 RRKLSHLDYDITLQEAGLCPQETVFVQE 118 (124)
T ss_dssp CCEETSSCSSSCTTTTTCCSSBCCEEEE
T ss_pred CcCCccCCCCCCHHHCCCCCceEEEEEE
Confidence 7776 457899999999988888764
No 123
>2dzk_A UBX domain-containing protein 2; ubiquitin-like fold, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Mus musculus} PDB: 2kxj_A
Probab=95.31 E-value=0.088 Score=43.16 Aligned_cols=73 Identities=15% Similarity=0.179 Sum_probs=58.9
Q ss_pred CCeeEEEEEe-CCEEEEEEEcCCCCHHHHHHHHhcccCCCccCcEEe--ccCcccC---CchhhhhcCCCCCCEEEEee
Q 018493 53 PPTIRVRVKY-GSIYHEIHINSQATFGELKKLLTGPTGLHHEDQKLI--YKDKERD---SKAFLDVVGVKDKSKLVLVE 125 (355)
Q Consensus 53 ~~~I~V~VK~-gg~~~~V~V~~~sTVgdLK~~I~e~TGVppe~QKLI--ykGK~ld---D~~tLs~~GIKdgSkImLv~ 125 (355)
.+..+|.|+. +|.+..-.++.++||.+|++-|....+.+.....|+ |--|.+. .+.+|.++|+.+...|++..
T Consensus 11 ~~~t~IqIRlpdG~rl~~rF~~~~tl~~v~~fV~~~~~~~~~~f~L~t~fPrk~l~~~d~~~TL~elgL~psa~L~v~~ 89 (109)
T 2dzk_A 11 STIARIQFRLPDGSSFTNQFPSDAPLEEARQFAAQTVGNTYGNFSLATMFPRREFTREDYKRRLLDLELAPSASVVLLP 89 (109)
T ss_dssp SCCEEEEEECSSSCEEEEEECTTSBHHHHHHHHHHHHTTSSCSCEEECSSSCCBCCTTTTTSBTGGGTCSSEEEEEEEC
T ss_pred CCcEEEEEECCCCCEEEEEeCCCCCHHHHHHHHHhccCCCCCceEEEcCCCCcCCcccccCCCHHHCCCCCceEEEEEE
Confidence 3457777775 456777889999999999999999888877788887 5566654 47899999999998888764
No 124
>2daj_A KIAA0977 protein, COBL-like 1; ubiquitin-like domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=94.83 E-value=0.079 Score=42.69 Aligned_cols=74 Identities=18% Similarity=0.337 Sum_probs=63.2
Q ss_pred CCCCCCeeEEEEEeC-CEEEEEEEcCCCCHHHHHHHHhcccCCCccCcEEe--ccCc-ccCCchhhhhcCCCCCCEEEEe
Q 018493 49 TSAPPPTIRVRVKYG-SIYHEIHINSQATFGELKKLLTGPTGLHHEDQKLI--YKDK-ERDSKAFLDVVGVKDKSKLVLV 124 (355)
Q Consensus 49 ~~~~~~~I~V~VK~g-g~~~~V~V~~~sTVgdLK~~I~e~TGVppe~QKLI--ykGK-~ldD~~tLs~~GIKdgSkImLv 124 (355)
+.++..++++.|-+. .++.-+-|++..++.+|--.|+++..+.|+.--|+ ++-. .||-+..|.+|||++ |+.+
T Consensus 4 ~~~PE~TvRLvVNy~~tQKtVvRVSP~vpL~ellp~IC~Kcefdp~~~~Ll~d~~~~e~LdLskSLndlgirE---Lya~ 80 (91)
T 2daj_A 4 GSSGEKTVRVVINFKKTQKTIVRVSPHASLQELAPIICSKCEFDPLHTLLLKDYQSQEPLDLTKSLNDLGLRE---LYAM 80 (91)
T ss_dssp CSCCCSCEEEEEEETTTEEEEEEECSSSCTTTHHHHHHHHTTCCTTSEEEESCSSCCCBCCTTSCHHHHTCSE---EEEE
T ss_pred CCCCccEEEEEEeecCcceeEEEeCCCCcHHHHHHHHhhcccCChhhEEEecCCCCCcccchhcchhhhhhhh---hhee
Confidence 357788999999985 57888999999999999999999999999999888 3333 499999999999997 6665
Q ss_pred e
Q 018493 125 E 125 (355)
Q Consensus 125 ~ 125 (355)
.
T Consensus 81 d 81 (91)
T 2daj_A 81 D 81 (91)
T ss_dssp E
T ss_pred c
Confidence 4
No 125
>1oey_A P67-PHOX, neutrophil cytosol factor 2; immune system, PB1 heterodimer/complex, NADPH oxidase, PB1 D heterodimerization; 2.0A {Homo sapiens} SCOP: d.15.2.2
Probab=93.98 E-value=0.088 Score=41.87 Aligned_cols=49 Identities=14% Similarity=0.311 Sum_probs=43.9
Q ss_pred CCeeEEEEEeCCEEEEEEEcCCCCHHHHHHHHhcccCCCccCcEEeccCc
Q 018493 53 PPTIRVRVKYGSIYHEIHINSQATFGELKKLLTGPTGLHHEDQKLIYKDK 102 (355)
Q Consensus 53 ~~~I~V~VK~gg~~~~V~V~~~sTVgdLK~~I~e~TGVppe~QKLIykGK 102 (355)
...++|+|.+. -++-|.|+...++.+|+.+|+++.+++++..+|-|+..
T Consensus 3 ~~~~~VKV~~~-~tvairvp~~~~y~~L~~~l~~kL~l~~~~~~LsYk~~ 51 (83)
T 1oey_A 3 HMAYTLKVHYK-YTVVMKTQPGLPYSQVRDMVSKKLELRLEHTKLSYRPR 51 (83)
T ss_dssp SSCEEEEEESS-SEEEEEECTTCCHHHHHHHHHHHTTCCGGGCCEEECCT
T ss_pred CCcEEEEEEEE-EEEEEECCCCCCHHHHHHHHHHHhCCCcceeEEEeeCC
Confidence 34478888888 67889999999999999999999999999999999875
No 126
>4a3p_A Ubiquitin carboxyl-terminal hydrolase 15; 1.40A {Homo sapiens} PDB: 4a3o_A 3pv1_A 3ppa_A* 3t9l_A 3lmn_A
Probab=93.78 E-value=0.24 Score=45.03 Aligned_cols=69 Identities=12% Similarity=0.161 Sum_probs=53.3
Q ss_pred eEEEEEeCCE---EEEEEEcCCCCHHHHHHHHhcccCCCcc-CcEEe--c-cCcc--cCC-chhhhhcCCCCCCEEEEe
Q 018493 56 IRVRVKYGSI---YHEIHINSQATFGELKKLLTGPTGLHHE-DQKLI--Y-KDKE--RDS-KAFLDVVGVKDKSKLVLV 124 (355)
Q Consensus 56 I~V~VK~gg~---~~~V~V~~~sTVgdLK~~I~e~TGVppe-~QKLI--y-kGK~--ldD-~~tLs~~GIKdgSkImLv 124 (355)
+.+++...+. .+.+.++..+||.+|++.+...++|+++ ..||- | .++. ++| +.+|.+++|.+|..|+|=
T Consensus 128 ~~l~l~~~~~~~~~~~~~~Sk~~ti~~l~~~~~~~~~i~~~~~~RlW~~~~~~~~~~L~~~~~tl~~~~l~~~Q~illE 206 (217)
T 4a3p_A 128 TELKLCENGNMNNVVTRRFSKADTIDTIEKEIRKIFSIPDEKETRLWNKYMSNTFEPLNKPDSTIQDAGLYQGQVLVIE 206 (217)
T ss_dssp EEEEEEETTEEEEEEEEEECTTSBHHHHHHHHHHHTTCCTTSCEEEEEEEETTEEEECCCTTSBHHHHTCCTTCEEEEE
T ss_pred cEEEEEecCCCCcceEEEEcccchHHHHHHHHHHHhCCCCCCceEEEEecCCCCeeecCCCCCCHHHhCCCCCCEEEEE
Confidence 4555555442 3567889999999999999999999997 68875 3 3333 555 579999999999999874
No 127
>1vd2_A Protein kinase C, IOTA type; PB1 domain, OPCA motif, APKC, ZIP/P62, MEK5, molecular recognition, transferase; NMR {Homo sapiens} SCOP: d.15.2.2 PDB: 1wmh_A
Probab=93.22 E-value=0.22 Score=39.98 Aligned_cols=50 Identities=16% Similarity=0.218 Sum_probs=43.1
Q ss_pred CCCeeEEEEEeCCEEEEEEEcCCCCHHHHHHHHhcccCCCccC-cEEeccC
Q 018493 52 PPPTIRVRVKYGSIYHEIHINSQATFGELKKLLTGPTGLHHED-QKLIYKD 101 (355)
Q Consensus 52 ~~~~I~V~VK~gg~~~~V~V~~~sTVgdLK~~I~e~TGVppe~-QKLIykG 101 (355)
++..|+|++.+.|..+-+.++++.++.+|.++|.+..+++.++ ..|-|+.
T Consensus 3 ~~~~vkvK~~~~gdi~~~~v~~~i~~~~L~~kv~~~~~~~~~~~f~lky~D 53 (89)
T 1vd2_A 3 LGSQVRVKAYYRGDIMITHFEPSISFEGLCNEVRDMCSFDNEQLFTMKWID 53 (89)
T ss_dssp CSSCEEEEEESSSCEEEEEECTTCCHHHHHHHHHHHTTCCSSCCEEEEECC
T ss_pred CCCeEEEEEEeCCeEEEEECCCCCCHHHHHHHHHHHhCCCCCCeEEEEEEC
Confidence 4567999999999999999999999999999999999998655 5666764
No 128
>3ivf_A Talin-1; FERM domain, cell membrane, cell projection, cytoskeleton, M phosphoprotein, cell adhesion, structural protein; 1.94A {Mus musculus} PDB: 2kma_A 2kc1_A
Probab=92.87 E-value=0.41 Score=46.08 Aligned_cols=70 Identities=9% Similarity=0.138 Sum_probs=57.0
Q ss_pred eeEEEEEeCCEEEEEEEcCCCCHHHHHHHHhcccC----CCccCcEEec------cCcccCCchhhhhcCCCCCCEEEEe
Q 018493 55 TIRVRVKYGSIYHEIHINSQATFGELKKLLTGPTG----LHHEDQKLIY------KDKERDSKAFLDVVGVKDKSKLVLV 124 (355)
Q Consensus 55 ~I~V~VK~gg~~~~V~V~~~sTVgdLK~~I~e~TG----Vppe~QKLIy------kGK~ldD~~tLs~~GIKdgSkImLv 124 (355)
.+.++|...+.+..+.+++++||.|....|.++.. .+.++--|.- +|+-+++..+|+.||+++|+.|..-
T Consensus 3 ~~~~~~~~~~~~~~~~f~~~~~v~~~~~~i~e~~~~~~~~~~~~y~l~~~~~~~~~~~Wl~~~~~l~~y~~~~~~~l~~~ 82 (371)
T 3ivf_A 3 ALSLKISIGNVVKTMQFEPSTMVYDACRMIRERIPEALAGPPNDFGLFLSDDDPKKGIWLEAGKALDYYMLRNGDTMEYR 82 (371)
T ss_dssp CEEEEEEETTEEEEEEECTTCBHHHHHHHHHTTCGGGGSSCGGGEEEEECCSSGGGCEECCTTSBGGGGTCCTTCEEEEE
T ss_pred cEEEEEEecceeEEEEECCCCCHHHHHHHHHHhcccccCCCHHHCeEeccCCCCCcCEeccCCCCHHHhCCCCCceeecc
Confidence 35666666688899999999999999999988764 3577778876 4555888999999999999988654
No 129
>2cr5_A Reproduction 8; UBX domain, D0H8S2298E protein, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Mus musculus} SCOP: d.15.1.2
Probab=92.75 E-value=0.41 Score=39.04 Aligned_cols=72 Identities=13% Similarity=0.141 Sum_probs=56.5
Q ss_pred CCeeEEEEEe-CCEEEEEEEcCCCCHHHHHHHHhcccCCCccCcEEe--ccCccc--CCchhhhhcCCCCCCEEEEee
Q 018493 53 PPTIRVRVKY-GSIYHEIHINSQATFGELKKLLTGPTGLHHEDQKLI--YKDKER--DSKAFLDVVGVKDKSKLVLVE 125 (355)
Q Consensus 53 ~~~I~V~VK~-gg~~~~V~V~~~sTVgdLK~~I~e~TGVppe~QKLI--ykGK~l--dD~~tLs~~GIKdgSkImLv~ 125 (355)
.+.++|.|+. .|.++.-.+..++||.+|..-|... +..+...+|+ |=.|.+ +.+.+|.++||.+...|+|-.
T Consensus 21 ~~~~~IqiRlpdG~r~~rrF~~~~tl~~v~~fv~~~-~~~~~~f~L~t~fPrk~l~~d~~~TL~e~gL~p~a~L~Ve~ 97 (109)
T 2cr5_A 21 EEVVTVALRCPNGRVLRRRFFKSWNSQVLLDWMMKV-GYHKSLYRLSTSFPRRALEVEGGSSLEDIGITVDTVLNVEE 97 (109)
T ss_dssp SSEEEEEEECTTSCEEEEEEESSSBTHHHHHHHHHH-TCCTTTEEEECSSSCCBCCCCSSCBHHHHTCSSCEEEEEEE
T ss_pred CCcEEEEEECCCCCEEEEEeCCCCCHHHHHHHHHhc-CCCCCCeEEEeCCCCcCCCCCCCCCHHHcCCCCCeEEEEEe
Confidence 4578888886 4566777899999999999999864 5566778887 556665 467899999999988887754
No 130
>3jyu_A Ubiquitin carboxyl-terminal hydrolase; domain in ubiquitin-specific peptidases (DUSP), proto- oncogene, ubiquitin-fold, UBL, protease, thioesterase; HET: 1PS; 2.37A {Mus musculus}
Probab=92.51 E-value=0.43 Score=43.75 Aligned_cols=70 Identities=13% Similarity=0.137 Sum_probs=53.0
Q ss_pred eEEEEEeCCE---EEEEEEcCCCCHHHHHHHHhcccCCCcc-CcEEec-c-C-cc--cCC-chhhhhcCCCCCCEEEEee
Q 018493 56 IRVRVKYGSI---YHEIHINSQATFGELKKLLTGPTGLHHE-DQKLIY-K-D-KE--RDS-KAFLDVVGVKDKSKLVLVE 125 (355)
Q Consensus 56 I~V~VK~gg~---~~~V~V~~~sTVgdLK~~I~e~TGVppe-~QKLIy-k-G-K~--ldD-~~tLs~~GIKdgSkImLv~ 125 (355)
+.+++...+. .+.+.++..+||.+|++.+...++|+++ ..||-. . . +. ++| +.+|.+++|.+|..|+|=.
T Consensus 140 ~~l~l~~~~~~~~~~~~~~Sk~~ti~~l~~~~~~~~~i~~~~~~RLW~~~~~~~~~~L~~~~~tl~d~~L~~~Q~illE~ 219 (231)
T 3jyu_A 140 LELKLCENSDPTNVLSCHFSKADTIATIEKEMRKLFNIPAERETRLWNKYMSNTYEQLSKLDNTIQDAGLYQGQVLVIEP 219 (231)
T ss_dssp EEEEEEETTEEEEEEEEEECTTCBHHHHHHHHHHHTTCCTTSCEEEEECSSSSSCEECCCTTSBTTTTTCCTTEEEEEEE
T ss_pred ceEEEEecCCCCceEEEEecccCcHHHHHHHHHHHhCCCCCCeEEEEEecCCCCHhhhcCCCCCHHHhCCCCCCEEEEEE
Confidence 4555555443 3456779999999999999999999997 688863 2 2 22 554 6899999999999888743
No 131
>1ip9_A BEM1 protein; ubiquitin alpha/beta roll, signaling protein; NMR {Saccharomyces cerevisiae} SCOP: d.15.2.2 PDB: 1ipg_A 2kfk_A
Probab=91.59 E-value=0.47 Score=37.96 Aligned_cols=69 Identities=14% Similarity=0.238 Sum_probs=51.8
Q ss_pred CeeEEEEEeCCEEEEEEEcCCCCHHHHHHHHhcccCCCccCcEEe-ccCc----ccCCchhhhhcCCCCCCEEEEee
Q 018493 54 PTIRVRVKYGSIYHEIHINSQATFGELKKLLTGPTGLHHEDQKLI-YKDK----ERDSKAFLDVVGVKDKSKLVLVE 125 (355)
Q Consensus 54 ~~I~V~VK~gg~~~~V~V~~~sTVgdLK~~I~e~TGVppe~QKLI-ykGK----~ldD~~tLs~~GIKdgSkImLv~ 125 (355)
..++|++-+.+..+-|-||.+-++.+|+.+|.....+ +...|+ |++- .+.++..|+.. |..++||+|..
T Consensus 11 ~~~KVK~yy~DDIiAIrvP~di~~~~L~dKi~~RLk~--~~~~l~~ykde~~g~~i~sD~dl~~a-iqrn~KL~l~~ 84 (85)
T 1ip9_A 11 KTTKIKFYYKDDIFALMLKGDTTYKELRSKIAPRIDT--DNFKLQTKLFDGSGEEIKTDSQVSNI-IQAKLKISVHD 84 (85)
T ss_dssp CCEEEEECBTTCCEEEEECSCCCHHHHHHHHHHHHTS--SCEEEEECCSSSCCSCCCSHHHHHHH-HHTTCCEEEEE
T ss_pred CceEEEEEecCcEEEEECCCCCCHHHHHHHHHHHhcc--cceEEEEecCCCCCCcccCHHHHHHH-HHhcCeeEEec
Confidence 5689999999999999999999999999999999998 455554 4432 34455555443 66677777653
No 132
>1ryj_A Unknown; beta/alpha protein, structural genomics, protein structure initiative, OCSP, NESG, PSI; NMR {Methanothermococcusthermolithotrophicus} SCOP: d.15.3.2
Probab=91.30 E-value=1.4 Score=32.87 Aligned_cols=61 Identities=7% Similarity=0.004 Sum_probs=46.9
Q ss_pred eEEEEEeCCEEEEEEEcCCCCHHHHHHHHhcccCCCccCcEEeccCcccCCchhhhhcCCCCCCEEEEee
Q 018493 56 IRVRVKYGSIYHEIHINSQATFGELKKLLTGPTGLHHEDQKLIYKDKERDSKAFLDVVGVKDKSKLVLVE 125 (355)
Q Consensus 56 I~V~VK~gg~~~~V~V~~~sTVgdLK~~I~e~TGVppe~QKLIykGK~ldD~~tLs~~GIKdgSkImLv~ 125 (355)
++|+|-.......++++...|+.+|.+.+ +++++..-+.++|.....+. -|++||+|-++.
T Consensus 5 m~i~vNg~~~~~~~~~~~~~tv~~Ll~~l----~~~~~~v~vavN~~~v~~~~-----~L~~gD~V~ii~ 65 (70)
T 1ryj_A 5 MKFTVITDDGKKILESGAPRRIKDVLGEL----EIPIETVVVKKNGQIVIDEE-----EIFDGDIIEVIR 65 (70)
T ss_dssp EEEEEEETTEEEEEEESSCCBHHHHHHHT----TCCTTTEEEEETTEECCTTS-----BCCTTCEEEEEE
T ss_pred EEEEEeCccCceeEECCCCCcHHHHHHHh----CCCCCCEEEEECCEECCCcc-----cCCCCCEEEEEe
Confidence 56666666656677888889999999987 56677777778998865443 689999998874
No 133
>1s3s_G P47 protein; AAA ATPase, protein-protein complex, UBX domain, protein binding; HET: ADP; 2.90A {Rattus norvegicus} SCOP: d.15.1.2 PDB: 1i42_A 1jru_A
Probab=91.12 E-value=0.38 Score=40.38 Aligned_cols=68 Identities=10% Similarity=0.213 Sum_probs=50.3
Q ss_pred CeeEEEEEe-CCEEEEEEEcCCCCHHHHHHHHhcc-cCCCccCcEEe--ccCcccC-CchhhhhcCCCCCCEE
Q 018493 54 PTIRVRVKY-GSIYHEIHINSQATFGELKKLLTGP-TGLHHEDQKLI--YKDKERD-SKAFLDVVGVKDKSKL 121 (355)
Q Consensus 54 ~~I~V~VK~-gg~~~~V~V~~~sTVgdLK~~I~e~-TGVppe~QKLI--ykGK~ld-D~~tLs~~GIKdgSkI 121 (355)
+..+|.|+. +|.+..-.++.++||.+|++-|... .+.......|+ |-.|.++ ++.+|.++|+.+...|
T Consensus 51 ~~t~IqIRlpdG~rl~~rF~~~~tl~~v~~fV~~~~~~~~~~~f~L~t~fPrk~l~d~~~TL~eagL~psavl 123 (127)
T 1s3s_G 51 PTTNIQIRLADGGRLVQKFNHSHRISDIRLFIVDARPAMAATSFVLMTTFPNKELADENQTLKEANLLNAVIV 123 (127)
T ss_dssp CCCCEEEEETTTTEEEEECCSSCBHHHHHHHHHHHCSGGGTSCEEEEETTTTEECCSTTCBHHHHTCSSCEEE
T ss_pred CcEEEEEECCCCCEEEEEeCCCCCHHHHHHHHHHhCcCCCCCCeEEecCCCCCCCCCCCCcHHHCCCcCceEE
Confidence 445555554 3456677899999999999999885 45556677887 5667764 5689999999985433
No 134
>2l32_A Small archaeal modifier protein 2; protein BIN; NMR {Haloferax volcanii}
Probab=90.31 E-value=0.65 Score=35.53 Aligned_cols=59 Identities=12% Similarity=0.289 Sum_probs=43.9
Q ss_pred EEEEEe-CCEEEEEEEcCCCCHHHHHHHHhcccCCCccCcEEeccCcccCCchhhhhcCCCCCCEEEEee
Q 018493 57 RVRVKY-GSIYHEIHINSQATFGELKKLLTGPTGLHHEDQKLIYKDKERDSKAFLDVVGVKDKSKLVLVE 125 (355)
Q Consensus 57 ~V~VK~-gg~~~~V~V~~~sTVgdLK~~I~e~TGVppe~QKLIykGK~ldD~~tLs~~GIKdgSkImLv~ 125 (355)
+|+|+- |.....++++..+|+.||-+. .|++++.--++.+|+....+. +.+|++|-++.
T Consensus 2 ~v~Vkl~g~~~~~~ev~~g~Tv~dLL~~----Lgl~~~~VvV~vNG~~v~~d~------~l~GD~VeIv~ 61 (74)
T 2l32_A 2 NVTVEVVGEETSEVAVDDDGTYADLVRA----VDLSPHEVTVLVDGRPVPEDQ------SVEVDRVKVLR 61 (74)
T ss_dssp EEEEECSSSSEEEEECSTTCSHHHHHHT----TCCCSSCCCEECCCCCCCTTS------SSCCCCEEECS
T ss_pred EEEEEEeCccceeEEcCCCCcHHHHHHH----cCCCcceEEEEECCEECCHHH------CCCCCEEEEEE
Confidence 445552 555667899999999998655 899999987788898855444 34699998873
No 135
>4eut_A Serine/threonine-protein kinase TBK1; ATP binding, phosphorylation, transferase-transferas inhibitor complex; HET: BX7; 2.60A {Homo sapiens}
Probab=87.39 E-value=1.4 Score=41.89 Aligned_cols=71 Identities=20% Similarity=0.201 Sum_probs=55.7
Q ss_pred eEEEEEeCCEEEEEEEcCCCCHHHHHHHHhcccCCCccCcEEeccCc-c-cCCchhhhhcCCCC-CCEEEEeec
Q 018493 56 IRVRVKYGSIYHEIHINSQATFGELKKLLTGPTGLHHEDQKLIYKDK-E-RDSKAFLDVVGVKD-KSKLVLVED 126 (355)
Q Consensus 56 I~V~VK~gg~~~~V~V~~~sTVgdLK~~I~e~TGVppe~QKLIykGK-~-ldD~~tLs~~GIKd-gSkImLv~~ 126 (355)
+.+........+.+.+.+..|+.+|++.++..||++++.|.|+|.|. . ++...+.+.|.-.. .+-|+|+..
T Consensus 313 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~t~i~~~~q~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 386 (396)
T 4eut_A 313 IHVFSLQQMTAHKIYIHSYNTATIFHELVYKQTKIISSNQELIYEGRRLVLEPGRLAQHFPKTTEENPIFVVSR 386 (396)
T ss_dssp EEEEETTTTEEEEEEECTTCBHHHHHHHHHHHHCCCSTTEEEESSSSEECCCSSCBTTSSCCCCSSSCEEEEEC
T ss_pred EEEEEeccceEEEEEcCchhHHHHHHHHHHHhcCCChhhhHHHhcCCCCCCCCCCccccCCCCCCCCCeEEEec
Confidence 34444456788889999999999999999999999999999999994 4 67777777776533 356676654
No 136
>1vjk_A Molybdopterin converting factor, subunit 1; structural genomics, PSI, protein structure INI southeast collaboratory for structural genomics; 1.51A {Pyrococcus furiosus} SCOP: d.15.3.1
Probab=85.83 E-value=4.3 Score=31.87 Aligned_cols=66 Identities=18% Similarity=0.234 Sum_probs=45.2
Q ss_pred eeEEEEEe--------CCEEEEEEEcCCCCHHHHHHHHhcccC-C----------CccCcEEeccCcccCCchhhhhcCC
Q 018493 55 TIRVRVKY--------GSIYHEIHINSQATFGELKKLLTGPTG-L----------HHEDQKLIYKDKERDSKAFLDVVGV 115 (355)
Q Consensus 55 ~I~V~VK~--------gg~~~~V~V~~~sTVgdLK~~I~e~TG-V----------ppe~QKLIykGK~ldD~~tLs~~GI 115 (355)
.++|+|++ |.....++++...||++|.+.|..... + ......+..+|+..+. ++-|
T Consensus 9 ~~~v~V~~FA~lre~~g~~~~~~e~~~~~Tv~~Ll~~L~~~~p~l~~~l~~~~g~~~~~v~v~VNg~~v~~-----~~~L 83 (98)
T 1vjk_A 9 SVKVKVKYFARFRQLAGVDEEEIELPEGARVRDLIEEIKKRHEKFKEEVFGEGYDEDADVNIAVNGRYVSW-----DEEL 83 (98)
T ss_dssp CEEEEEEECTHHHHHHSSSEEEEEECTTCBHHHHHHHHHHHCGGGGGSCBCSSSCTTSSBEEEETTBCCCT-----TCBC
T ss_pred cEEEEEEEhHHHHHHhCCCeEEEECCCCCCHHHHHHHHHhHChhHHHHhhccccccCCcEEEEECCEECCC-----CCCC
Confidence 45677775 434567888888999999999876531 1 1133456667776542 5679
Q ss_pred CCCCEEEEee
Q 018493 116 KDKSKLVLVE 125 (355)
Q Consensus 116 KdgSkImLv~ 125 (355)
++|+.|.++.
T Consensus 84 ~dGDeV~i~p 93 (98)
T 1vjk_A 84 KDGDVVGVFP 93 (98)
T ss_dssp CTTCEEEEES
T ss_pred CCCCEEEEEC
Confidence 9999998874
No 137
>3po0_A Small archaeal modifier protein 1; ubiquitin-like protein, protein binding; 1.55A {Haloferax volcanii} PDB: 2l83_A
Probab=80.63 E-value=6.7 Score=29.90 Aligned_cols=58 Identities=17% Similarity=0.251 Sum_probs=39.8
Q ss_pred CCEEEEEEEcCCCCHHHHHHHHhcccC-CCc----------cCcEEeccCcccCCchhhhhcCCCCCCEEEEee
Q 018493 63 GSIYHEIHINSQATFGELKKLLTGPTG-LHH----------EDQKLIYKDKERDSKAFLDVVGVKDKSKLVLVE 125 (355)
Q Consensus 63 gg~~~~V~V~~~sTVgdLK~~I~e~TG-Vpp----------e~QKLIykGK~ldD~~tLs~~GIKdgSkImLv~ 125 (355)
|.....++++...||++|.+.|..... +.. ....+..+|+..+. +.-|++|+.|.++.
T Consensus 16 g~~~~~~~~~~~~Tv~~ll~~L~~~~p~~~~~~l~~~g~l~~~~~v~VN~~~v~~-----~~~l~~gDeV~i~P 84 (89)
T 3po0_A 16 GSRTVRVDVDGDATVGDALDALVGAHPALESRVFGDDGELYDHINVLRNGEAAAL-----GEATAAGDELALFP 84 (89)
T ss_dssp TCSEEEEECCTTCBHHHHHHHHHHHCGGGHHHHBCTTSCBCTTSEEEETTEECCT-----TSBCCTTCEEEEEC
T ss_pred CCCeEEEECCCCCcHHHHHHHHHHHCcHHHHHHhccCCcccccEEEEECCEECCC-----CcccCCCCEEEEEC
Confidence 445567888888999999999987642 110 12455567766543 45689999999874
No 138
>1q1o_A Cell division control protein 24; PB1 domain, PCCR, PC motif, OPCA motif, yeast, cell polarity, protein-protein interaction; NMR {Saccharomyces cerevisiae} SCOP: d.15.2.2 PDB: 2kfj_A 2kfk_B
Probab=79.27 E-value=2.2 Score=34.85 Aligned_cols=48 Identities=21% Similarity=0.325 Sum_probs=38.2
Q ss_pred CeeEEEEEeC--------CEEEEEEEcCCCCHHHHHHHHhcccCCCcc-----CcEEeccC
Q 018493 54 PTIRVRVKYG--------SIYHEIHINSQATFGELKKLLTGPTGLHHE-----DQKLIYKD 101 (355)
Q Consensus 54 ~~I~V~VK~g--------g~~~~V~V~~~sTVgdLK~~I~e~TGVppe-----~QKLIykG 101 (355)
..|+|+|.++ +..+.|-|+++.++.+|..+|..+.+++.. ..||-|+.
T Consensus 4 ~sikVKv~y~~~~~~~~~~d~~~i~V~~~i~f~~L~~kI~~Kl~~~~~~~i~~~~klkYkD 64 (98)
T 1q1o_A 4 GSILFRISYNNNSNNTSSSEIFTLLVEKVWNFDDLIMAINSKISNTHNNNISPITKIKYQD 64 (98)
T ss_dssp SCEEEEEEECSSCSSCCCCEEEEEEECTTCCHHHHHHHHHHHHHHHCSSCCCCCCCEEEEC
T ss_pred ccEEEEEEecCcccccccCcEEEEEecCCCCHHHHHHHHHHHHcCCccccccceeEEEEEc
Confidence 3489999988 667889999999999999999999887522 24665654
No 139
>4e71_A Plexin-B2, MM1; transmembrane, signaling, RBD, structural genomics consortium, SGC, signaling protein; 2.26A {Homo sapiens}
Probab=78.90 E-value=7.3 Score=32.42 Aligned_cols=73 Identities=16% Similarity=0.178 Sum_probs=48.6
Q ss_pred CCeeEEEEEe---CCEEEEEEEcCCCCHHHHHHHHhcc--cCCCc------cCcEEecc-C---cccCC-----------
Q 018493 53 PPTIRVRVKY---GSIYHEIHINSQATFGELKKLLTGP--TGLHH------EDQKLIYK-D---KERDS----------- 106 (355)
Q Consensus 53 ~~~I~V~VK~---gg~~~~V~V~~~sTVgdLK~~I~e~--TGVpp------e~QKLIyk-G---K~ldD----------- 106 (355)
-.+++|.|.. ++..+++.|-..+||..+|++|-.. -|+|. ++.-|=++ | +.|.|
T Consensus 9 ~~~ltl~v~~~~~~~~~i~vkVLdCDTItQvKeKiLd~vyk~~pyS~rP~~~~~dLEwr~g~~~~iL~D~D~ts~~~~~w 88 (111)
T 4e71_A 9 YAPLTVSVIVQDEGVDAIPVKVLNCDTISQVKEKIIDQVYRGQPCSCWPRPDSVVLEWRPGSTAQILSDLDLTSQREGRW 88 (111)
T ss_dssp CCEEEEEEEETTSCCCCEEEEEETTCBHHHHHHHHHHHHTC---------CCSEEEEEC--CCCEECCSSCTTSCC---C
T ss_pred eEEEEEEEEecCCCCCceeeeeeccCcHHHHHHHHHHHHHcCCccccCCCCCceeeEEecCCCCccccccCccceecCcc
Confidence 4567777764 3455778888899999999998764 35552 45556553 3 22332
Q ss_pred --chhhhhcCCCCCCEEEEee
Q 018493 107 --KAFLDVVGVKDKSKLVLVE 125 (355)
Q Consensus 107 --~~tLs~~GIKdgSkImLv~ 125 (355)
-.||..|+|.||++|-|+.
T Consensus 89 krLNTL~HY~V~dgatl~l~~ 109 (111)
T 4e71_A 89 KRVNTLMHYNVRDGATLILSK 109 (111)
T ss_dssp CCCCBHHHHTCCTTCEEEEEE
T ss_pred eEecchhhcCCCCCCEEEEEe
Confidence 1379999999999998864
No 140
>2kvr_A Ubiquitin carboxyl-terminal hydrolase 7; USP7, ubiquitin-like domain, UBL, ubiquitin specific protease, HOST-virus interaction, nucleus, protease; NMR {Homo sapiens}
Probab=77.26 E-value=1.6 Score=36.98 Aligned_cols=32 Identities=13% Similarity=0.264 Sum_probs=28.8
Q ss_pred EEEEcCCCCHHHHHHHHhcccCCCccCcEEec
Q 018493 68 EIHINSQATFGELKKLLTGPTGLHHEDQKLIY 99 (355)
Q Consensus 68 ~V~V~~~sTVgdLK~~I~e~TGVppe~QKLIy 99 (355)
.+-|..++||.+|+..|++.+|+|+++|+|-+
T Consensus 59 ~~rv~k~~~~~~~~~~va~~lg~~~~~~RlW~ 90 (130)
T 2kvr_A 59 VFKVLKNSSLAEFVQSLSQTMGFPQDQIRLWP 90 (130)
T ss_dssp EEECCTTSBHHHHHHHHHHHHCCCGGGCEEEE
T ss_pred eEEEeccCcHHHHHHHHHHHhCCCcccEEEEE
Confidence 35688899999999999999999999999863
No 141
>2hj1_A Hypothetical protein; structural genomics, PSI, protein structure initiative, NEW research center for structural genomics, nysgxrc; 2.10A {Haemophilus influenzae} SCOP: d.15.3.4
Probab=75.41 E-value=10 Score=30.53 Aligned_cols=69 Identities=7% Similarity=0.050 Sum_probs=51.0
Q ss_pred CCCeeEEEEEeC--C--EEEEEEEcCCCCHHHHHHHHhc---ccCCCccCcEEeccCcccCCchhhhhcCCCCCCEEEEe
Q 018493 52 PPPTIRVRVKYG--S--IYHEIHINSQATFGELKKLLTG---PTGLHHEDQKLIYKDKERDSKAFLDVVGVKDKSKLVLV 124 (355)
Q Consensus 52 ~~~~I~V~VK~g--g--~~~~V~V~~~sTVgdLK~~I~e---~TGVppe~QKLIykGK~ldD~~tLs~~GIKdgSkImLv 124 (355)
+-.+|.|.|.|. . ....++++..+||.++=..+.- ...|.....++...|+... .+.-+++||.|-++
T Consensus 9 ~~~~~~v~v~ya~p~rq~~~~~~v~~g~TV~daI~~~gi~~~~peIdl~~~~V~Vng~~v~-----~d~~L~dGDRVEIy 83 (97)
T 2hj1_A 9 SLNQINIEIAYAFPERYYLKSFQVDEGITVQTAITQSGILSQFPEIDLSTNKIGIFSRPIK-----LTDVLKEGDRIEIY 83 (97)
T ss_dssp --CEEEEEEEEEETTEEEEEEEEEETTCBHHHHHHHHTHHHHCTTCCTTTSEEEEEECSCC-----TTCBCCTTCEEEEC
T ss_pred ccceEEEEEEEeCCCCCEEEEEEcCCCCcHHHHHHHcCCCccCCcccccccEEEEcCEECC-----CCccCCCCCEEEEE
Confidence 356789999983 3 3456788999999999887653 3456666788888898865 44458999999887
Q ss_pred e
Q 018493 125 E 125 (355)
Q Consensus 125 ~ 125 (355)
.
T Consensus 84 r 84 (97)
T 2hj1_A 84 R 84 (97)
T ss_dssp C
T ss_pred e
Confidence 4
No 142
>2r2o_A Plexin-B1; effector domain, structural genomics, structural GEN consortium, SGC, glycoprotein, membrane, phosphorylation, R secreted, transmembrane; 2.00A {Homo sapiens} PDB: 2rex_A* 2jph_A
Probab=75.10 E-value=11 Score=32.47 Aligned_cols=75 Identities=11% Similarity=0.083 Sum_probs=51.4
Q ss_pred CCCeeEEEEEeC-------CEEEEEEEcCCCCHHHHHHHHhcc--cCCCc------cCcEEec----cCcc-cCCc----
Q 018493 52 PPPTIRVRVKYG-------SIYHEIHINSQATFGELKKLLTGP--TGLHH------EDQKLIY----KDKE-RDSK---- 107 (355)
Q Consensus 52 ~~~~I~V~VK~g-------g~~~~V~V~~~sTVgdLK~~I~e~--TGVpp------e~QKLIy----kGK~-ldD~---- 107 (355)
.-.+++|.|... ...++|.|-..+||..+|++|-+. -|+|. ++.-|=+ .|+. |.|.
T Consensus 21 ey~~ltl~v~~~~~~~~~~~~~i~VkVLdCDTItQvKeKiLDavYk~~PySqRP~~~d~dLEwr~g~~g~liL~D~D~tS 100 (138)
T 2r2o_A 21 EYRPLTLNALLAVGPGAGEAQGVPVKVLDCDTISQAKEKMLDQLYKGVPLTQRPDPRTLDVEWRSGVAGHLILSDEDVTS 100 (138)
T ss_dssp -CCEEEEEEEEC-------CCCEEEEEETTCBHHHHHHHHHHHHTTTSCGGGCCCGGGEEEEEECSSSCEEEECSSSTTC
T ss_pred eeEEEEEEEEccCCcccccCCceeEEEeccccHHHHHHHHHHHHHcCCccccCCCccceeEEEecCCcCceEeeccCCcc
Confidence 346677777542 346788888999999999999875 45653 3334433 1332 3321
Q ss_pred ---------hhhhhcCCCCCCEEEEeec
Q 018493 108 ---------AFLDVVGVKDKSKLVLVED 126 (355)
Q Consensus 108 ---------~tLs~~GIKdgSkImLv~~ 126 (355)
.+|..|+|.||++|-|+..
T Consensus 101 ~~~~~wkrLNTL~HY~V~Dga~l~l~~~ 128 (138)
T 2r2o_A 101 EVQGLWRRLNTLQHYKVPDGATVALVPC 128 (138)
T ss_dssp CEETTEEECCBHHHHTCCTTCEEEEEEC
T ss_pred cccCCceeecchhccCCCCCCEEEEEEC
Confidence 2899999999999999864
No 143
>1tyg_B YJBS; alpha beta barrel, protein-protein complex, THis, BIOS protein; 3.15A {Bacillus subtilis} SCOP: d.15.3.2
Probab=74.41 E-value=6.3 Score=31.06 Aligned_cols=61 Identities=10% Similarity=0.054 Sum_probs=43.2
Q ss_pred EEEEeCCEEEEEEEcCC-CCHHHHHHHHhcccCCCccCcEEeccCcccCCchhhhhcCCCCCCEEEEee
Q 018493 58 VRVKYGSIYHEIHINSQ-ATFGELKKLLTGPTGLHHEDQKLIYKDKERDSKAFLDVVGVKDKSKLVLVE 125 (355)
Q Consensus 58 V~VK~gg~~~~V~V~~~-sTVgdLK~~I~e~TGVppe~QKLIykGK~ldD~~tLs~~GIKdgSkImLv~ 125 (355)
++|.-+++. ++++.. .||.+|.+.| ++++....+..+|.....+ ...+.-|++||+|-++.
T Consensus 21 M~I~vNGe~--~el~~~~~Tv~dLL~~L----~~~~~~vaVavNg~iV~~~-~~~~~~L~dGD~Vei~~ 82 (87)
T 1tyg_B 21 HMLQLNGKD--VKWKKDTGTIQDLLASY----QLENKIVIVERNKEIIGKE-RYHEVELCDRDVIEIVH 82 (87)
T ss_dssp -CEEETTEE--ECCSSSCCBHHHHHHHT----TCTTSCCEEEETTEEECGG-GTTTSBCCSSSEEEEEE
T ss_pred eEEEECCEE--EECCCCCCcHHHHHHHh----CCCCCCEEEEECCEECChh-hcCCcCCCCCCEEEEEc
Confidence 345556664 456776 8999999886 5777777777888875433 34456799999999874
No 144
>1wgk_A Riken cDNA 2900073H19 protein; THis domain, ubiqutin-like fold, structural genomics, riken structural genomics/proteomics initiative, RSGI; NMR {Mus musculus} SCOP: d.15.3.3 PDB: 1xo3_A
Probab=73.76 E-value=6.7 Score=32.26 Aligned_cols=70 Identities=13% Similarity=0.235 Sum_probs=43.6
Q ss_pred CeeEEEEEe--------CC-EEEEEEEcC---CCCHHHHHHHHhcccCCCccCcEEecc-Ccc------c---CCchhhh
Q 018493 54 PTIRVRVKY--------GS-IYHEIHINS---QATFGELKKLLTGPTGLHHEDQKLIYK-DKE------R---DSKAFLD 111 (355)
Q Consensus 54 ~~I~V~VK~--------gg-~~~~V~V~~---~sTVgdLK~~I~e~TGVppe~QKLIyk-GK~------l---dD~~tLs 111 (355)
++++|+|+. ++ +.++|+++. ..||++|-..|.+.. +..+-+|+.. |+. + +|-..|.
T Consensus 10 ~~M~v~V~~~~~Lr~~~g~~~~~~vel~~~~~~~TV~~Ll~~L~~~~--~~~~~~lf~~~g~lr~~i~VlVN~~di~~l~ 87 (114)
T 1wgk_A 10 APLCVKVEFGGGAELLFDGVKKHQVALPGQEEPWDIRNLLVWIKKNL--LKERPELFIQGDSVRPGILVLINDADWELLG 87 (114)
T ss_dssp CCEEEEEEECTTTGGGTTTCSEEEEEECCCSSCCBHHHHHHHHTTTT--CCSCHHHHCCSSSCCSSEEEEESSSBHHHHC
T ss_pred CCcEEEEEEchHHHHHhCCceEEEEEeCCCCCCCCHHHHHHHHHHHc--cchhHhhCccCCcccCCeEEEECCeeeeccC
Confidence 457777774 43 367899984 369999999999876 2223333322 221 1 1222333
Q ss_pred --hcCCCCCCEEEEee
Q 018493 112 --VVGVKDKSKLVLVE 125 (355)
Q Consensus 112 --~~GIKdgSkImLv~ 125 (355)
++-|++||.|.++-
T Consensus 88 gldt~L~dGDeV~iip 103 (114)
T 1wgk_A 88 ELDYQLQDQDSILFIS 103 (114)
T ss_dssp TTTCBCCSSEEEEEEE
T ss_pred CcCcCCCCCCEEEEeC
Confidence 46799999998874
No 145
>1fm0_D Molybdopterin convertin factor, subunit 1; molybdenum cofactor biosynthesis, transferase; 1.45A {Escherichia coli} SCOP: d.15.3.1 PDB: 1fma_D 1jw9_D 1jwa_D* 1jwb_D* 3bii_D 1nvi_D
Probab=73.10 E-value=7.5 Score=28.88 Aligned_cols=54 Identities=9% Similarity=0.072 Sum_probs=36.2
Q ss_pred EEEEEEcCCCCHHHHHHHHhcccC-----CCccCcEEeccCcccCCchhhhhcCCCCCCEEEEee
Q 018493 66 YHEIHINSQATFGELKKLLTGPTG-----LHHEDQKLIYKDKERDSKAFLDVVGVKDKSKLVLVE 125 (355)
Q Consensus 66 ~~~V~V~~~sTVgdLK~~I~e~TG-----Vppe~QKLIykGK~ldD~~tLs~~GIKdgSkImLv~ 125 (355)
...++ +...||.+|.+.|..... ++.....+..+|+.... +.-|++|+.|.++.
T Consensus 18 ~~~~~-~~~~tv~~ll~~L~~~~p~~~~~l~~~~~~v~vN~~~v~~-----~~~l~~gD~V~i~P 76 (81)
T 1fm0_D 18 ATEVA-ADFPTVEALRQHMAAQSDRWALALEDGKLLAAVNQTLVSF-----DHPLTDGDEVAFFP 76 (81)
T ss_dssp EEEEC-SCCSBHHHHHHHHHTTCHHHHHHHCCTTCEEEETTEECCT-----TCBCCTTCEEEEEC
T ss_pred eEEEc-CCCCCHHHHHHHHHHHChhHHHHhcCCCEEEEECCEECCC-----CCCCCCCCEEEEeC
Confidence 44455 566799999999986531 22233456677776542 45689999999874
No 146
>3qa8_A MGC80376 protein; kinase ubiquitin-like domain, phosphorylation, kinase domain ubiquitin-like domain, kinase, substrate binding; 3.60A {Xenopus laevis} PDB: 3qad_A* 3rzf_A*
Probab=72.57 E-value=2.3 Score=44.94 Aligned_cols=57 Identities=21% Similarity=0.212 Sum_probs=46.7
Q ss_pred EEEEEeCCEEEEEEEcCCCCHHHHHHHHhcccCCCccCcEEeccCcc-cCCchhhhhc
Q 018493 57 RVRVKYGSIYHEIHINSQATFGELKKLLTGPTGLHHEDQKLIYKDKE-RDSKAFLDVV 113 (355)
Q Consensus 57 ~V~VK~gg~~~~V~V~~~sTVgdLK~~I~e~TGVppe~QKLIykGK~-ldD~~tLs~~ 113 (355)
.+........+.+.+.++.|+.+|+..|++.|||+++.|.|++.+.. +++....+.|
T Consensus 314 ~~f~~~~~~~~~~~i~~~~tl~~l~~~i~~~T~i~~~~q~~~~~~~~~~~p~~~~~~~ 371 (676)
T 3qa8_A 314 SVMNMVSGRVHTYPVTENENLQNLKSWLQQDTGIPEEEQELLQASGLALNSAQPLTQY 371 (676)
T ss_dssp ECCCSSSSCCCEEECCTTCCHHHHHHHHHTTSCCCSTTCEEESSSSCCCCTTSCGGGS
T ss_pred ccccccccccceeecCCCccHHHHHHHHHHHhCCCHHHHHHHhccCCCCCCCcchhhh
Confidence 33333456667888999999999999999999999999999998776 7777777765
No 147
>3rpf_C Molybdopterin converting factor, subunit 1 (MOAD); MCSG, PSI-biology, structural genomics, midwest center for S genomics, transferase; 1.90A {Helicobacter pylori}
Probab=72.15 E-value=12 Score=27.64 Aligned_cols=53 Identities=21% Similarity=0.265 Sum_probs=35.8
Q ss_pred EEEEcCCCCHHHHHHHHhcccCCCc--cCcEEeccCcccCCchhhhhcCCCCCCEEEEee
Q 018493 68 EIHINSQATFGELKKLLTGPTGLHH--EDQKLIYKDKERDSKAFLDVVGVKDKSKLVLVE 125 (355)
Q Consensus 68 ~V~V~~~sTVgdLK~~I~e~TGVpp--e~QKLIykGK~ldD~~tLs~~GIKdgSkImLv~ 125 (355)
.+++ ...||++|.+.|....++.. ..-.+..+|....+ .+.-|++|++|.++.
T Consensus 15 ~~e~-~~~tv~~ll~~L~~~~~l~~~l~~~~vavN~~~v~~----~~~~l~~gDeV~i~P 69 (74)
T 3rpf_C 15 NFFI-KANDLKELRAILQEKEGLKEWLGVCAIALNDHLIDN----LNTPLKDGDVISLLP 69 (74)
T ss_dssp CEEE-ECSSHHHHHHHHHTCTTTTTTTTTCEEEESSSEECC----TTCCCCTTCEEEEEC
T ss_pred EEee-CCCcHHHHHHHHHHCcCHHHHhhccEEEECCEEcCC----CCcCCCCCCEEEEEC
Confidence 3566 56799999999987654432 33445566766332 245699999999874
No 148
>1wgy_A RAP guanine nucleotide exchange factor 5; ubiquitin fold, riken structural genomics/proteomics initiative, RSGI, structural genomics; NMR {Homo sapiens} SCOP: d.15.1.5
Probab=66.94 E-value=12 Score=30.72 Aligned_cols=76 Identities=11% Similarity=0.180 Sum_probs=54.8
Q ss_pred CCCCeeEEEEEeCC-EEEEEEEcCCCCHHHHHHHHhcccCCCccCcEEe---ccCcc--cCCchhhhhcCCCCCCEEEEe
Q 018493 51 APPPTIRVRVKYGS-IYHEIHINSQATFGELKKLLTGPTGLHHEDQKLI---YKDKE--RDSKAFLDVVGVKDKSKLVLV 124 (355)
Q Consensus 51 ~~~~~I~V~VK~gg-~~~~V~V~~~sTVgdLK~~I~e~TGVppe~QKLI---ykGK~--ldD~~tLs~~GIKdgSkImLv 124 (355)
.+...|..+|-... ....+.++...|+.+++..++++++...+.+.|+ |.|-. +.+++.--.-.+.-+.+|++.
T Consensus 5 ~~sD~i~~~Vy~~Dhsy~tvr~~v~~sa~eIl~~va~kl~~~~e~l~Lv~v~ssGEk~~lqp~d~si~tsL~~NgRLfvc 84 (104)
T 1wgy_A 5 SSGEEIFCHVYITEHSYVSVKAKVSSIAQEILKVVAEKIQYAEEDLALVAITFSGEKHELQPNDLVISKSLEASGRIYVY 84 (104)
T ss_dssp CCSSCCCEEEECSSSCEEEECCCTTCBSHHHHHHHHHHHTSCGGGEEEEEECSSCCCCBCCTTSBSSCCSSCSSCEEEEE
T ss_pred CCCCceEEEEEeccCceEEEEEeccchHHHHHHHHHHHhcCCccceEEEEEccCCcEeecCCcceEEEeeccccceEEEe
Confidence 34556667776543 4456789999999999999999999988788887 66754 555554444455557788886
Q ss_pred ec
Q 018493 125 ED 126 (355)
Q Consensus 125 ~~ 126 (355)
.+
T Consensus 85 ~k 86 (104)
T 1wgy_A 85 RK 86 (104)
T ss_dssp EC
T ss_pred eh
Confidence 53
No 149
>1y8x_B Ubiquitin-activating enzyme E1C; ubiquitin-conjugating enzyme E2 M, ligase; 2.40A {Homo sapiens} SCOP: c.111.1.2 PDB: 3fn1_A
Probab=65.74 E-value=2 Score=34.92 Aligned_cols=60 Identities=18% Similarity=0.317 Sum_probs=41.8
Q ss_pred EEEEEEcCCCCHHHHHHHHhcccCCC-------cc----CcEEeccCc-ccCC------chhhhhcCCCCCCEEEEee
Q 018493 66 YHEIHINSQATFGELKKLLTGPTGLH-------HE----DQKLIYKDK-ERDS------KAFLDVVGVKDKSKLVLVE 125 (355)
Q Consensus 66 ~~~V~V~~~sTVgdLK~~I~e~TGVp-------pe----~QKLIykGK-~ldD------~~tLs~~GIKdgSkImLv~ 125 (355)
...|+|+++.|+.+|-+.|.+.-.+. .. .-.|++.+- .++. +.+|.++|+.+|+.|++..
T Consensus 6 ~~~l~v~~~~TL~~lid~L~~~p~~qlk~PSltt~~~~~~k~LYmq~pp~Lee~Tr~NL~k~l~eLgl~~g~ei~VtD 83 (98)
T 1y8x_B 6 PQNIQFSPSAKLQEVLDYLTNSASLQMKSPAITATLEGKNRTLYMQSVTSIEERTRPNLSKTLKELGLVDGQELAVAD 83 (98)
T ss_dssp CCCEECCTTCBHHHHHHHHHHCTTCCCSSCEEEEEETTEEEEEECSSCHHHHHHHHHHHHSBSGGGTCCTTCEEEEEC
T ss_pred cEEEEECCchhHHHHHHHHHhChHhhccCCeeeeecCCCCCeEEEeCcHHHHHHhHhhhhCCHHHhCCCCCCEEEEEC
Confidence 34678999999999999999843322 11 345555552 2322 3458999999999998863
No 150
>1ef1_A Moesin; membrane, FERM domain, tail domain, membrane protein; 1.90A {Homo sapiens} SCOP: a.11.2.1 b.55.1.5 d.15.1.4 PDB: 1sgh_A 1j19_A 2emt_A 2ems_A 2d10_A 2d11_A 2yvc_A 2d2q_A 2zpy_A 1gc7_A 1gc6_A 1ni2_A
Probab=64.87 E-value=22 Score=32.48 Aligned_cols=68 Identities=24% Similarity=0.173 Sum_probs=51.3
Q ss_pred eEEEEEeCCEEEEEEEcCCCCHHHHHHHHhcccCCCccC-cEEec---cCcc--cCCchhhhhcCCCCCCEEEE
Q 018493 56 IRVRVKYGSIYHEIHINSQATFGELKKLLTGPTGLHHED-QKLIY---KDKE--RDSKAFLDVVGVKDKSKLVL 123 (355)
Q Consensus 56 I~V~VK~gg~~~~V~V~~~sTVgdLK~~I~e~TGVppe~-QKLIy---kGK~--ldD~~tLs~~GIKdgSkImL 123 (355)
|.|+|..-+.++.+.|++.+|+.||-+.|+...||.... .-|.| .|.. ++.+.+|...+++.+..+.|
T Consensus 2 i~~~V~l~d~~~~~~v~~~tt~~el~~~v~~~l~L~e~~~FgL~~~~~~~~~~wLd~~~~l~~q~~~~~~~~~l 75 (294)
T 1ef1_A 2 ISVRVTTMDAELEFAIQPNTTGKQLFDQVVKTIGLREVWFFGLQYQDTKGFSTWLKLNKKVTAQDVRKESPLLF 75 (294)
T ss_dssp EEEEEEETTEEEEEEECTTCBHHHHHHHHHHHHTCCCGGGEEEEEEBTTSCEEECCSSSBGGGSCBCCCSSEEE
T ss_pred EEEEEEECCceEEEEECCCCcHHHHHHHHHHHcCCCCcceeEEEEECCCCceeecccccCHHhhccCCCCCEEE
Confidence 667777654578899999999999999999999998543 34554 3433 78888999888776665544
No 151
>3onh_A Ubiquitin-activating enzyme E1-like; ligase, SUMO conjugation, UBC9; 1.60A {Saccharomyces cerevisiae} PDB: 3ong_A
Probab=63.50 E-value=10 Score=32.35 Aligned_cols=58 Identities=12% Similarity=0.294 Sum_probs=41.6
Q ss_pred EEEEcC----CCCHHHHHHHHhcccCCCc-------cCcEEeccCcccCC--chhhhhcCCCCCCEEEEeec
Q 018493 68 EIHINS----QATFGELKKLLTGPTGLHH-------EDQKLIYKDKERDS--KAFLDVVGVKDKSKLVLVED 126 (355)
Q Consensus 68 ~V~V~~----~sTVgdLK~~I~e~TGVpp-------e~QKLIykGK~ldD--~~tLs~~GIKdgSkImLv~~ 126 (355)
.+.|+. .+|+++|-+.|....|... ..++|||-=-. +| ..+|+++||++|+.|.++..
T Consensus 9 vl~v~~~dl~~~TL~dLV~~l~~~~gy~~eiSV~~~~~~rLLyD~Df-DDnl~k~L~dLgv~~gsfLtv~DE 79 (127)
T 3onh_A 9 VIKLSSDCLNKMKLSDFVVLIREKYSYPQDISLLDASNQRLLFDYDF-EDLNDRTLSEINLGNGSIILFSDE 79 (127)
T ss_dssp EEEECHHHHHHCBHHHHHHHHHHHHTCCSSEEEEETTTTEEEEETTB-CTTTTSBTTTTTCCTTCEEEEEES
T ss_pred EEEeCcccccccCHHHHHHHHHHhcCCCCcEEEEecCCCCeEeCCCc-cccccCcHHHcCcCCCcEEEEEcc
Confidence 345654 4699999888888777653 25677765432 33 36799999999999999854
No 152
>2qjl_A URM1, ubiquitin-related modifier 1; ubiquitin-like protein, signaling protein; 1.44A {Saccharomyces cerevisiae} PDB: 2pko_A 2ax5_A
Probab=62.20 E-value=41 Score=26.21 Aligned_cols=59 Identities=12% Similarity=0.147 Sum_probs=35.3
Q ss_pred CEEEEEEEc--CCCCHHHHHHHHhcccC-CCccC------c------EEeccCcccCCchhh--hhcCCCCCCEEEEee
Q 018493 64 SIYHEIHIN--SQATFGELKKLLTGPTG-LHHED------Q------KLIYKDKERDSKAFL--DVVGVKDKSKLVLVE 125 (355)
Q Consensus 64 g~~~~V~V~--~~sTVgdLK~~I~e~TG-Vppe~------Q------KLIykGK~ldD~~tL--s~~GIKdgSkImLv~ 125 (355)
...+.++++ ...||++|.+.|.+... ..++- - .++.+|.- -..+ .++-|++|+.|.++-
T Consensus 19 ~~~~~~~l~~~~~~Tv~~L~~~L~~~~~~~~~~l~~~~~~~~lr~~~~v~VN~~~---~~~~~~~d~~L~dgDeVa~~P 94 (99)
T 2qjl_A 19 QRVHKIKMDKEDPVTVGDLIDHIVSTMINNPNDVSIFIEDDSIRPGIITLINDTD---WELEGEKDYILEDGDIISFTS 94 (99)
T ss_dssp CCEEEEEECSCSCCBHHHHHHHHHHHTCSSGGGHHHHEETTEECTTEEEEETTEE---GGGGTGGGCBCCTTCEEEEEE
T ss_pred CcEEEEecCCCCCCcHHHHHHHHHHHCchhhHHHhhhccCCccccCeEEEECCEE---ccccCCCCcCcCCCCEEEEEC
Confidence 356677887 67899999999987652 11110 1 12222321 1122 345799999998874
No 153
>2eel_A Cell death activator CIDE-A; CIDE-N domain, cell death- inducing DFFA-like effector A, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=62.12 E-value=22 Score=28.51 Aligned_cols=50 Identities=16% Similarity=0.286 Sum_probs=39.4
Q ss_pred CCHHHHHHHHhcccCCCccCcEEe--ccCcccCCchhhhhcCCCCCCEEEEeec
Q 018493 75 ATFGELKKLLTGPTGLHHEDQKLI--YKDKERDSKAFLDVVGVKDKSKLVLVED 126 (355)
Q Consensus 75 sTVgdLK~~I~e~TGVppe~QKLI--ykGK~ldD~~tLs~~GIKdgSkImLv~~ 126 (355)
.++.||+.+..+.++|+...-.|+ ..|-+++|++++..+. ++..+|++..
T Consensus 28 ~sL~EL~~K~~~~l~l~~~~~~lvLeeDGT~VddEeyF~tLp--~nT~lmvL~~ 79 (91)
T 2eel_A 28 SSLQELISKTLDALVIATGLVTLVLEEDGTVVDTEEFFQTLG--DNTHFMILEK 79 (91)
T ss_dssp SSHHHHHHHHHHHTTCSSSCEEEEETTTCCBCCCHHHHTTSC--SSEEEEEEET
T ss_pred CCHHHHHHHHHHHhcCCCCCcEEEEeeCCcEEechhhhhhCC--CCCEEEEEcC
Confidence 389999999999999975555554 4688899999988875 7777777753
No 154
>4e74_A Plexin-A4; RBD, structural genomics, structural genomics consor SGC, signaling protein; 1.58A {Homo sapiens} PDB: 3q3j_A*
Probab=60.79 E-value=25 Score=29.43 Aligned_cols=74 Identities=18% Similarity=0.109 Sum_probs=50.0
Q ss_pred CCeeEEEEEeC----CEEEEEEEcCCCCHHHHHHHHhcc--cCCCc------cCcEEec-cCc---c-cCC---------
Q 018493 53 PPTIRVRVKYG----SIYHEIHINSQATFGELKKLLTGP--TGLHH------EDQKLIY-KDK---E-RDS--------- 106 (355)
Q Consensus 53 ~~~I~V~VK~g----g~~~~V~V~~~sTVgdLK~~I~e~--TGVpp------e~QKLIy-kGK---~-ldD--------- 106 (355)
..+++|.|... ...++|.|-..+||..+|++|-.. -|+|. ++.-|-| .|. . |.|
T Consensus 11 ~~~ltl~v~~~~~~~~~~i~VkVLdCDTItQvKeKiLd~vyk~~p~S~rP~~~~~dLEwr~g~~~~~iL~D~D~ts~~~~ 90 (117)
T 4e74_A 11 YKTLVLSCVSPDNANSPEVPVKILNCDTITQVKEKILDAIFKNVPCSHRPKAADMDLEWRQGSGARMILQDEDITTKIEN 90 (117)
T ss_dssp CCEEEEEECCC----CCCEEEEEETTSBHHHHHHHHHHHHTTTSCGGGSCCGGGEEEEEECTTSCEEEECSSSTTCCC--
T ss_pred cEEEEEEEEccCCCCCCceEeeeecCCchHHHHHHHHHHHhcCCCcccCCCCCceeEEEecCCCCceEeecCCCccEecC
Confidence 45677777652 334777788899999999988764 35553 3455554 232 1 222
Q ss_pred ----chhhhhcCCCCCCEEEEeec
Q 018493 107 ----KAFLDVVGVKDKSKLVLVED 126 (355)
Q Consensus 107 ----~~tLs~~GIKdgSkImLv~~ 126 (355)
-.||..|+|.||++|-|+..
T Consensus 91 ~wkrLNTL~HY~V~dgatl~l~~~ 114 (117)
T 4e74_A 91 DWKRLNTLAHYQVPDGSVVALVSK 114 (117)
T ss_dssp -CCCCCBHHHHTCCTTCEEEEEEC
T ss_pred cceEeccccccCCCCCCEEEEEeC
Confidence 13789999999999998754
No 155
>2bkf_A Zinc-finger protein NBR1 (NEXT to breast cancer 1; PB1 domain, interaction domain, Z finger; 1.56A {Homo sapiens} SCOP: d.15.2.2 PDB: 2g4s_A
Probab=60.58 E-value=23 Score=28.23 Aligned_cols=47 Identities=11% Similarity=0.319 Sum_probs=38.6
Q ss_pred CCCeeEEEEEeCCEEEEEEEcC--CCCHHHHHHHHhcccCCCccCcEEecc
Q 018493 52 PPPTIRVRVKYGSIYHEIHINS--QATFGELKKLLTGPTGLHHEDQKLIYK 100 (355)
Q Consensus 52 ~~~~I~V~VK~gg~~~~V~V~~--~sTVgdLK~~I~e~TGVppe~QKLIyk 100 (355)
..+.+.++|.+.|..+.+.|.. ..|+.+|..++....|+. ...|=|.
T Consensus 3 ~~~~v~lkV~f~ge~~rf~vs~~~~~tweel~~mvk~~f~L~--~~~ikY~ 51 (87)
T 2bkf_A 3 MEPQVTLNVTFKNEIQSFLVSDPENTTWADIEAMVKVSFDLN--TIQIKYL 51 (87)
T ss_dssp CCCCEEEEEEETTEEEEEEESCGGGCCHHHHHHHHHHHHTCS--SEEEEEE
T ss_pred CCceEEEEEEEcCCeeEEEeccCCCCCHHHHHHHHHHHcCCC--ceEEEEE
Confidence 4678999999999999988855 889999999999999996 3344343
No 156
>2cu1_A Mitogen-activated protein kinase kinase kinase 2; PB1 domain, MAPK/ERK kinase kinase 2, MEK kinase 2, MEKK 2, signaling protein; NMR {Homo sapiens} SCOP: d.15.2.2
Probab=60.46 E-value=13 Score=30.58 Aligned_cols=46 Identities=13% Similarity=0.190 Sum_probs=39.2
Q ss_pred CeeEEEEEeCCEEEEEEEcCCCCHHHHHHHHhcccCCCccCcEEeccCc
Q 018493 54 PTIRVRVKYGSIYHEIHINSQATFGELKKLLTGPTGLHHEDQKLIYKDK 102 (355)
Q Consensus 54 ~~I~V~VK~gg~~~~V~V~~~sTVgdLK~~I~e~TGVppe~QKLIykGK 102 (355)
..++|+.-|+|++..|.|+..-++.||.+++.+.+|-+ .-|.|-..
T Consensus 7 ~dvRiKfE~~GEkRIi~f~RPv~f~eL~~Kv~~~fGq~---ldL~y~n~ 52 (103)
T 2cu1_A 7 GDVRVKFEHRGEKRILQFPRPVKLEDLRSKAKIAFGQS---MDLHYTNN 52 (103)
T ss_dssp CEEEEEEEETTEEEEEEEESSCCHHHHHHHHHHHHSSC---EEEEECSS
T ss_pred CcEEEEEEecCeEEEEeccCCccHHHHHHHHHHHhCCe---eeEEEecc
Confidence 45888888999999999999999999999999999964 44666643
No 157
>3h6n_A Plexin-D1; structural genomics consortium, SGC, membrane, transmembrane, receptor, alternative splicing, cell membrane, glycoprotein, polymorphism; 2.00A {Homo sapiens}
Probab=59.83 E-value=34 Score=29.02 Aligned_cols=72 Identities=13% Similarity=0.121 Sum_probs=47.1
Q ss_pred eeEEEEEe---CCEEEEEEEcCCCCHHHHHHHHhcc--cCCC------ccCcEEec-cCc---c-cCC------------
Q 018493 55 TIRVRVKY---GSIYHEIHINSQATFGELKKLLTGP--TGLH------HEDQKLIY-KDK---E-RDS------------ 106 (355)
Q Consensus 55 ~I~V~VK~---gg~~~~V~V~~~sTVgdLK~~I~e~--TGVp------pe~QKLIy-kGK---~-ldD------------ 106 (355)
++++.|.. ++..+++.|-..+||..+|++|-.. -|+| ++++-|=| .|. . |.|
T Consensus 4 ~ltl~~~~~~~~~~~i~VkVLdCDTItQvKeKiLd~vyk~~p~S~rP~~~~~dLEwr~g~~~~~iL~D~D~ts~~~~~~k 83 (127)
T 3h6n_A 4 PRNLNVSFQGCGMDSLSVRAMDTDTLTQVKEKILEAFCKNVPYSQWPRAEDVDLEWFASSTQSYILRDLDDTSVVEDGRK 83 (127)
T ss_dssp EEEEEEEEETSCCCCEEEEEETTSBHHHHHHHHHHHHSTTSCGGGSCCGGGEEEEEECSSSCEEECCSSSTTSCEETTEE
T ss_pred EEEEEEEecCCCCCceeeeeeccCchhhhhHHHHHHHhccCCcccCCCCcccceEEecCCCCceEeecCCCcceecCcee
Confidence 34444442 2344667777889999999998764 3554 34556655 232 2 332
Q ss_pred -chhhhhcCCCCCCEEEEeec
Q 018493 107 -KAFLDVVGVKDKSKLVLVED 126 (355)
Q Consensus 107 -~~tLs~~GIKdgSkImLv~~ 126 (355)
-.||..|+|.||++|-|+..
T Consensus 84 rLNTL~HY~V~dgatv~l~~~ 104 (127)
T 3h6n_A 84 KLNTLAHYKIPEGASLAMSLI 104 (127)
T ss_dssp CCCBTTTTTCCTTCEEEEEEC
T ss_pred EeccccccCCCCCCEEEEEEc
Confidence 13789999999999999753
No 158
>3mud_A DNA repair protein XRCC4, tropomyosin alpha-1 CHA; tropomysoin, overlap complex, coiled-coils, contractIle PROT; HET: DNA; 2.20A {Homo sapiens} PDB: 3sr2_A*
Probab=59.77 E-value=29 Score=31.00 Aligned_cols=98 Identities=18% Similarity=0.275 Sum_probs=57.2
Q ss_pred CHHHHHHHHhcc--------cCCCccCcEEeccCcccCCchhhhhcCCCCCCEEEEeecCCchHHHHHHHhhhhhhhhhh
Q 018493 76 TFGELKKLLTGP--------TGLHHEDQKLIYKDKERDSKAFLDVVGVKDKSKLVLVEDPISQEKRLLEMRKNAKLEKAS 147 (355)
Q Consensus 76 TVgdLK~~I~e~--------TGVppe~QKLIykGK~ldD~~tLs~~GIKdgSkImLv~~p~s~E~~~~e~kk~k~ieka~ 147 (355)
-|.+|++.+-.. +++.|+...+-|+...++-...|.++.++ ...++.+-..++ |.-+.
T Consensus 69 Yv~el~kAl~~~~~~~~~~~f~~s~e~~~~syek~lk~vsfrLGs~~Lk---------~a~~paE~irel-----i~~Ae 134 (175)
T 3mud_A 69 YVGELRKALLSGAGPADVYTFNFSKESCYFFFEKNLKDVSFRLGSFNLE---------KVENPAEVIREL-----ICYCL 134 (175)
T ss_dssp HHHHHHHHHTTCCCTTCCEEEEECTTTCEEEEEEECSSCEEEEEEEECE---------ECSCHHHHHHHH-----HHHHH
T ss_pred HHHHHHHHHhcCCCCCcceEEecChhHHHHHHHHHHHHHHHHhcccccc---------cCCChHHHHHHH-----HHHHH
Confidence 588999998322 44667777777776555444444443332 112233222222 23355
Q ss_pred hhHHHHHHHHHHhhhhHHHHHHHHHhCCCcchhhHhhHHHHHHHHHHhccC
Q 018493 148 KSISEISLEVDRLAGQVSALESIITKGGKVAEKDVLNLIELLMNQLLKLDG 198 (355)
Q Consensus 148 ~aIs~V~~eVDkLa~ev~~LE~~I~~g~Kv~eke~~~LsE~LMq~LLKLD~ 198 (355)
+.+.....++|+|++++... ..+++.+.+.|-+.|..|-+
T Consensus 135 rtV~kLqkeiD~LEDeL~~e-----------Kek~k~i~~eLDqTl~eL~~ 174 (175)
T 3mud_A 135 DTTAKNEKSIDDLEEKVAHA-----------KEENLNMHQMLDQTLLELNN 174 (175)
T ss_dssp HHHHHHHHHHHHHHHHHHHH-----------HHHHHHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHHHHHHHHH-----------HHHHHHHHHHHHHHHHHhhc
Confidence 56667777777777776443 55678888888777666543
No 159
>1wj6_A KIAA0049 protein, RSGI RUH-024; PB1 domain, protein binding, structural genomics, riken structural genomics/proteomics initiative; NMR {Homo sapiens} SCOP: d.15.2.2
Probab=57.43 E-value=46 Score=27.26 Aligned_cols=41 Identities=10% Similarity=0.326 Sum_probs=36.1
Q ss_pred CCCCeeEEEEEeCCEEEEEEEcC--CCCHHHHHHHHhcccCCC
Q 018493 51 APPPTIRVRVKYGSIYHEIHINS--QATFGELKKLLTGPTGLH 91 (355)
Q Consensus 51 ~~~~~I~V~VK~gg~~~~V~V~~--~sTVgdLK~~I~e~TGVp 91 (355)
...+.+.++|.+.|..+.+.|.. +.|+.+|..++....|+.
T Consensus 10 ~m~~~v~lkV~f~ge~~rF~Vs~~~~~tweel~~mvk~~f~L~ 52 (101)
T 1wj6_A 10 SMEPQVTLNVTFKNEIQSFLVSDPENTTWADIEAMVKVSFDLN 52 (101)
T ss_dssp SSCSCEEEEEEETTEEEEEEESCTTTSCHHHHHHHHHHHHCCS
T ss_pred ccCccEEEEEEEcCCeeEEEecCCCCCCHHHHHHHHHHHcCCC
Confidence 45678999999999999988755 789999999999999996
No 160
>2cu3_A Unknown function protein; thermus thermophilus HB8, structural genomics, riken structu genomics/proteomics initiative, RSGI, NPPSFA; 1.70A {Thermus thermophilus} SCOP: d.15.3.2 PDB: 2htm_E
Probab=57.19 E-value=19 Score=25.95 Aligned_cols=57 Identities=9% Similarity=0.060 Sum_probs=39.1
Q ss_pred EeCCEEEEEEEcCCCCHHHHHHHHhcccCCCccCcEEeccCcccCCchhhhhcCCCCCCEEEEee
Q 018493 61 KYGSIYHEIHINSQATFGELKKLLTGPTGLHHEDQKLIYKDKERDSKAFLDVVGVKDKSKLVLVE 125 (355)
Q Consensus 61 K~gg~~~~V~V~~~sTVgdLK~~I~e~TGVppe~QKLIykGK~ldD~~tLs~~GIKdgSkImLv~ 125 (355)
.-+++.+ ++ ...|+.+|.+.+ ++++....+..+|.....+ ...+.-|++|++|-++.
T Consensus 3 ~vNg~~~--~~-~~~tv~~ll~~l----~~~~~~v~vavN~~~v~~~-~~~~~~L~dgD~v~i~~ 59 (64)
T 2cu3_A 3 WLNGEPR--PL-EGKTLKEVLEEM----GVELKGVAVLLNEEAFLGL-EVPDRPLRDGDVVEVVA 59 (64)
T ss_dssp EETTEEE--CC-TTCCHHHHHHHH----TBCGGGEEEEETTEEEEGG-GCCCCCCCTTCEEEEEE
T ss_pred EECCEEE--Ec-CCCcHHHHHHHc----CCCCCcEEEEECCEECCcc-ccCCcCCCCCCEEEEEe
Confidence 3345544 44 568999999987 4566666677788765432 23445789999999874
No 161
>1f0z_A THis protein; ubiquitin fold, transport protein; NMR {Escherichia coli} SCOP: d.15.3.2 PDB: 1zud_2
Probab=56.30 E-value=17 Score=26.38 Aligned_cols=58 Identities=14% Similarity=0.133 Sum_probs=40.3
Q ss_pred EeCCEEEEEEEcCCCCHHHHHHHHhcccCCCccCcEEeccCcccCCchhhhhcCCCCCCEEEEee
Q 018493 61 KYGSIYHEIHINSQATFGELKKLLTGPTGLHHEDQKLIYKDKERDSKAFLDVVGVKDKSKLVLVE 125 (355)
Q Consensus 61 K~gg~~~~V~V~~~sTVgdLK~~I~e~TGVppe~QKLIykGK~ldD~~tLs~~GIKdgSkImLv~ 125 (355)
.-+++. ++++...|+.+|.+.+ ++++....+..+|...... ...+.-|++|++|.++.
T Consensus 4 ~vNg~~--~~~~~~~tv~~ll~~l----~~~~~~v~vavN~~~v~~~-~~~~~~L~~gD~v~i~~ 61 (66)
T 1f0z_A 4 LFNDQA--MQCAAGQTVHELLEQL----DQRQAGAALAINQQIVPRE-QWAQHIVQDGDQILLFQ 61 (66)
T ss_dssp EESSCE--ECCCTTCCHHHHHHHH----TCCCSSEEEEETTEEECHH-HHTTCCCCTTEEECEEE
T ss_pred EECCEE--EEcCCCCcHHHHHHHc----CCCCCCEEEEECCEECCch-hcCCcCCCCCCEEEEEe
Confidence 334443 4567778999999987 5666666677788765432 33456799999998874
No 162
>2l52_A Methanosarcina acetivorans SAMP1 homolog; beta-grAsp fold, protein binding, E1-like, SAMP activator, ELSA, adenylation, ubiquitin; NMR {Methanosarcina acetivorans}
Probab=55.78 E-value=31 Score=26.99 Aligned_cols=67 Identities=13% Similarity=0.101 Sum_probs=39.6
Q ss_pred eeEEEEEe--------CCEEEEEEEcCCCCHHHHHHHHhccc-CCCc---------cCc-------EEeccCcccCCchh
Q 018493 55 TIRVRVKY--------GSIYHEIHINSQATFGELKKLLTGPT-GLHH---------EDQ-------KLIYKDKERDSKAF 109 (355)
Q Consensus 55 ~I~V~VK~--------gg~~~~V~V~~~sTVgdLK~~I~e~T-GVpp---------e~Q-------KLIykGK~ldD~~t 109 (355)
+++|+|++ |...+ +++ ..||.+|.+.|.... ++.. ... .+..+|+......
T Consensus 3 mm~v~V~~fa~lr~~~g~~~~--~l~-~~tv~~ll~~L~~~~p~l~~~l~~~g~l~~~v~~~~~~~~v~VNg~~v~~~~- 78 (99)
T 2l52_A 3 MAEVKVKLFANLREAAGTPEL--PLS-GEKVIDVLLSLTDKYPALKYVIFEKGDEKSEILILCGSINILINGNNIRHLE- 78 (99)
T ss_dssp CCEEEEEECTHHHHHHSSSEE--EEE-CSSHHHHHHHHHHHCGGGTTTSBCSCCTTSSCCCBCSSCEEEETTSCGGGTT-
T ss_pred ceEEEEEEeHHHHHHhCCCeE--EEe-CCcHHHHHHHHHHHChhHHHHHhcccccccceeccccccEEEECCEEccccC-
Confidence 45677775 32334 444 589999999987663 1111 012 4566776542211
Q ss_pred hhhcCCCCCCEEEEee
Q 018493 110 LDVVGVKDKSKLVLVE 125 (355)
Q Consensus 110 Ls~~GIKdgSkImLv~ 125 (355)
-.++-|++|++|.++.
T Consensus 79 ~~~~~L~~gD~V~i~p 94 (99)
T 2l52_A 79 GLETLLKDSDEIGILP 94 (99)
T ss_dssp STTSCCCTTEEEEEEC
T ss_pred CCCCCCCCCCEEEEEC
Confidence 1244689999998874
No 163
>1h4r_A Merlin; FERM, neurofibromatosis, NF2, structural protein, cytoskeleton, anti-oncogene; 1.8A {Homo sapiens} SCOP: a.11.2.1 b.55.1.5 d.15.1.4 PDB: 1isn_A 3u8z_A
Probab=55.40 E-value=34 Score=31.67 Aligned_cols=70 Identities=20% Similarity=0.124 Sum_probs=52.2
Q ss_pred CCeeEEEEEeCCEEEEEEEcCCCCHHHHHHHHhcccCCCcc-CcEEec--cCcc--cCCchhhhhcCCCCCCEEE
Q 018493 53 PPTIRVRVKYGSIYHEIHINSQATFGELKKLLTGPTGLHHE-DQKLIY--KDKE--RDSKAFLDVVGVKDKSKLV 122 (355)
Q Consensus 53 ~~~I~V~VK~gg~~~~V~V~~~sTVgdLK~~I~e~TGVppe-~QKLIy--kGK~--ldD~~tLs~~GIKdgSkIm 122 (355)
...|.|+|..-+..+.+.|++.+|+.||=+.|+...||... -.-|.| +|.. ++.+.+|.+.+++.+..+.
T Consensus 20 ~~~~~~~V~lldg~~~~~v~~~t~~~el~~~v~~~l~L~e~~~FgL~~~~~~~~~wL~~~~~i~~q~~~~~~~~~ 94 (314)
T 1h4r_A 20 PKTFTVRIVTMDAEMEFNCEMKWKGKDLFDLVCRTLGLRETWFFGLQYTIKDTVAWLKMDKKVLDHDVSKEEPVT 94 (314)
T ss_dssp -CEEEEEEECSSCEEEEEEETTCBHHHHHHHHHHHHTCCCGGGEEEEEEETTEEEECCTTSBGGGSSCCCSSSEE
T ss_pred CCeeEEEEEeCCceEEEEeCCCCcHHHHHHHHHHHhCCCCCccceEEEEeCCcCeeCCCccCHHHcCCCCCCCEE
Confidence 46788888863337889999999999999999999999853 234555 3433 8888899998877666543
No 164
>1vcs_A Vesicle transport through interaction with T- snares homolog 1A; HABC domain, VTI1, UP and DOWN three helix bundle, LEFT-handed twist; NMR {Mus musculus} SCOP: a.47.2.1
Probab=54.05 E-value=19 Score=28.81 Aligned_cols=44 Identities=20% Similarity=0.241 Sum_probs=34.1
Q ss_pred hhhHhhHHHHHHHHHHhccCCCCChhhHHHHHHHHHHHHHHHHHHHHhh
Q 018493 179 EKDVLNLIELLMNQLLKLDGIMADGDVKLQRKMQVRRVQKYVETLDMLK 227 (355)
Q Consensus 179 eke~~~LsE~LMq~LLKLD~IeaeGdaR~qRK~~VkrVQ~~Le~LD~lk 227 (355)
|.+|..|...|.+.|-.|-+. .| .+||..|++|+..|+..+.|-
T Consensus 11 E~df~~l~~~i~~kl~~i~~~--~g---eerk~~i~~ie~~l~EA~ell 54 (102)
T 1vcs_A 11 EQDFAVLTAEITSKIARVPRL--PP---DEKKQMVANVEKQLEEARELL 54 (102)
T ss_dssp HHHHHHHHHHHHHHHHHGGGS--CT---TTHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHhhcc--Cc---HHHHHHHHHHHHHHHHHHHHH
Confidence 678888888888887776654 34 367888999988888877765
No 165
>2kl0_A Putative thiamin biosynthesis THis; structural genomics, PSI-2, protein structure initiative, N structural genomics consortium, NESG; NMR {Rhodopseudomonas palustris} PDB: 2lek_A
Probab=53.28 E-value=28 Score=26.17 Aligned_cols=57 Identities=9% Similarity=0.029 Sum_probs=41.9
Q ss_pred EeCCEEEEEEEcCCCCHHHHHHHHhcccCCCccCcEEeccCcccCCchhhhhcCCCCCCEEEEee
Q 018493 61 KYGSIYHEIHINSQATFGELKKLLTGPTGLHHEDQKLIYKDKERDSKAFLDVVGVKDKSKLVLVE 125 (355)
Q Consensus 61 K~gg~~~~V~V~~~sTVgdLK~~I~e~TGVppe~QKLIykGK~ldD~~tLs~~GIKdgSkImLv~ 125 (355)
.-+|+.++ + ...|+.+|-+. .|++++..-+.++|.... .....+.-|++||+|-++.
T Consensus 4 ~vNG~~~e--~-~~~Tl~~LL~~----l~~~~~~vAV~vNg~iVp-r~~~~~~~L~dGD~veIv~ 60 (73)
T 2kl0_A 4 TINGEQRE--V-QSASVAALMTE----LDCTGGHFAVALNYDVVP-RGKWDETPVTAGDEIEILT 60 (73)
T ss_dssp EETTEEEC--C-CCSBHHHHHHH----TTCCSSSCEEEESSSEEC-HHHHTTCBCCTTCEEEEEC
T ss_pred EECCEEEE--c-CCCcHHHHHHH----cCCCCCcEEEEECCEECC-hHHcCcccCCCCCEEEEEc
Confidence 34455444 4 56899998775 578888888889998753 3456677899999999883
No 166
>3ivf_A Talin-1; FERM domain, cell membrane, cell projection, cytoskeleton, M phosphoprotein, cell adhesion, structural protein; 1.94A {Mus musculus} PDB: 2kma_A 2kc1_A
Probab=53.19 E-value=63 Score=30.64 Aligned_cols=71 Identities=14% Similarity=0.234 Sum_probs=53.4
Q ss_pred CeeEEEEEe-CCEEEEEEEcCCCCHHHHHHHHhcccCCCcc-CcEEeccC---------cccCCchhhhhcCCCCCCEEE
Q 018493 54 PTIRVRVKY-GSIYHEIHINSQATFGELKKLLTGPTGLHHE-DQKLIYKD---------KERDSKAFLDVVGVKDKSKLV 122 (355)
Q Consensus 54 ~~I~V~VK~-gg~~~~V~V~~~sTVgdLK~~I~e~TGVppe-~QKLIykG---------K~ldD~~tLs~~GIKdgSkIm 122 (355)
..+.++|.. +|....+.|++.+|+.+|-+.|+...|+... -.-|.|.. .-++.+.+|...++....++.
T Consensus 84 ~~~~~~V~l~dg~~~~~~vd~~tt~~el~~~v~~~l~L~e~~~FgL~~~~~~~~~~~~~~wL~~~k~l~~q~~~~~~~l~ 163 (371)
T 3ivf_A 84 KQRPLKIRMLDGTVKTIMVDDSKTVTDMLMTICARIGITNHDEYSLVRELMEEKKDDELNWLDHGRTLREQGVEEHETLL 163 (371)
T ss_dssp CEEEEEEECTTSCEEEEEEETTSBHHHHHHHHHHHTTCSCGGGEEEECCC----------CCCTTSBTGGGTCCTTCEEE
T ss_pred ceeEEEEECcCCCEEEEEECCCCCHHHHHHHHHHHcCCCCccccEEEEEecccccchHHHHHhcCchhHhhCCCCCceEE
Confidence 346777775 5677889999999999999999999999853 45565532 126777788888887777776
Q ss_pred Ee
Q 018493 123 LV 124 (355)
Q Consensus 123 Lv 124 (355)
+.
T Consensus 164 fr 165 (371)
T 3ivf_A 164 LR 165 (371)
T ss_dssp EE
T ss_pred EE
Confidence 64
No 167
>1wmh_B Partitioning defective-6 homolog alpha; kinase, PB1 domain, OPCA motif, APKC, cell polarity, transferase/cell cycle complex; 1.50A {Homo sapiens} SCOP: d.15.2.2
Probab=53.09 E-value=32 Score=27.31 Aligned_cols=49 Identities=20% Similarity=0.339 Sum_probs=41.4
Q ss_pred CCeeEEEEEeCCEEEEEEEcC--CCCHHHHHHHHhcccCCCccCcEEeccC
Q 018493 53 PPTIRVRVKYGSIYHEIHINS--QATFGELKKLLTGPTGLHHEDQKLIYKD 101 (355)
Q Consensus 53 ~~~I~V~VK~gg~~~~V~V~~--~sTVgdLK~~I~e~TGVppe~QKLIykG 101 (355)
...+.|+.|++++..-+.++. ..++.+|..+|+....++....-|-|..
T Consensus 4 ~~~l~vKskf~aE~RRFs~d~~~~~~fe~f~~lv~~lh~L~~~~f~i~Y~D 54 (86)
T 1wmh_B 4 MSIVEVKSKFDAEFRRFALPRASVSGFQEFSRLLRAVHQIPGLDVLLGYTD 54 (86)
T ss_dssp -CEEEEEEEETTEEEEEEEEGGGCCCHHHHHHHHHHHTTCTTCCCEEEEEC
T ss_pred CCEEEEEeecCCeeeEeEccCCCCCCHHHHHHHHHHHcCCCCCCEEEEEEC
Confidence 356899999999988888874 4799999999999999987777888875
No 168
>3kuz_A Plexin-C1; structural genomics, structural genomics consortium, SGC; 2.30A {Homo sapiens}
Probab=52.67 E-value=52 Score=27.90 Aligned_cols=74 Identities=12% Similarity=0.129 Sum_probs=48.1
Q ss_pred CCCeeEEEEEe---C-------CEEEEEEEcCCCCHHHHHHHHhcc----cCCCc----cCcEEec-cCc---cc-----
Q 018493 52 PPPTIRVRVKY---G-------SIYHEIHINSQATFGELKKLLTGP----TGLHH----EDQKLIY-KDK---ER----- 104 (355)
Q Consensus 52 ~~~~I~V~VK~---g-------g~~~~V~V~~~sTVgdLK~~I~e~----TGVpp----e~QKLIy-kGK---~l----- 104 (355)
.-.++++.|.. . ...++|.|-..+||..+|++|-.. .|+|. +++-|-| .|. .|
T Consensus 16 ey~tLtL~vv~~~~~~~~~~~~~~~v~VkVLdCDTItQVKEKILdavYk~k~~pys~r~~d~dLEwr~g~~~~~L~D~D~ 95 (126)
T 3kuz_A 16 FQGTVALNVVFEKIPENESADVCRNISVNVLDCDTIGQAKEKIFQAFLSKNGSPYGLQLNEIGLELQMGTRQKELLDIDS 95 (126)
T ss_dssp -CCEEEEEEEECCCTTSSCSCSCCEEEEEEETTCBHHHHHHHHHHHHHHHHSSCCSSCGGGEEEEEEETTEEEEECSSCT
T ss_pred eeEEEEEEEEeeccCCCcCcCcCCceEeeeecCCcHHHHHHHHHHHHhccCCCcCCCCccccceEEecCCCcceeeccCC
Confidence 34567777776 1 245778888899999999888654 26664 3334433 122 11
Q ss_pred -----CC----chhhhhcCCCCCCEEEEee
Q 018493 105 -----DS----KAFLDVVGVKDKSKLVLVE 125 (355)
Q Consensus 105 -----dD----~~tLs~~GIKdgSkImLv~ 125 (355)
++ -.||..|+|.||++|-|+.
T Consensus 96 tS~~~e~~wkrLNTL~HY~V~Dgatlal~k 125 (126)
T 3kuz_A 96 SSVILEDGITKLNTIGHYEISNGSTIKVFK 125 (126)
T ss_dssp TCCBCTTSCBCCCBTGGGTCCTTCEEEEEE
T ss_pred cceEecCCeeEeccccccCCCCCCEEEEee
Confidence 11 2368889999999998874
No 169
>1rws_A Hypothetical protein PF1061; residual dipolar couplings, structural genomics, unknown FUN; NMR {Pyrococcus furiosus} SCOP: d.15.3.2 PDB: 1sf0_A
Probab=51.59 E-value=4.4 Score=30.57 Aligned_cols=47 Identities=15% Similarity=0.141 Sum_probs=35.4
Q ss_pred EEEcCCCCHHHHHHHHhcccCCCccCcEEeccCcccCCchhhhhcCCCCCCEEEEe
Q 018493 69 IHINSQATFGELKKLLTGPTGLHHEDQKLIYKDKERDSKAFLDVVGVKDKSKLVLV 124 (355)
Q Consensus 69 V~V~~~sTVgdLK~~I~e~TGVppe~QKLIykGK~ldD~~tLs~~GIKdgSkImLv 124 (355)
++++...||.+|.+.+ +++++...+..+|+..+.+ .-|++||+|-++
T Consensus 25 ~~~~~~~Tv~dLl~~L----~~~~~~v~VavNg~~v~~~-----~~L~dGD~V~i~ 71 (77)
T 1rws_A 25 IEWREGMKVRDILRAV----GFNTESAIAKVNGKVVLED-----DEVKDGDFVEVI 71 (77)
T ss_dssp CCCCSSCCHHHHHHTT----TCSSCSSCEEETTEEECSS-----SCCCSSCCCBCS
T ss_pred EECCCCCcHHHHHHHh----CCCCcCEEEEECCEECCCC-----CCcCCCCEEEEE
Confidence 4566778999998876 4666667777888876543 578999998776
No 170
>2q5w_D Molybdopterin converting factor, subunit 1; MOCO, MPT synthase, MOAD, MOAE, transferase, molybdenum cofactor biosynthesis; 2.00A {Staphylococcus aureus} PDB: 2qie_B*
Probab=51.47 E-value=9.7 Score=28.03 Aligned_cols=55 Identities=9% Similarity=0.143 Sum_probs=37.5
Q ss_pred EEEEEEEcCCCCHHHHHHHHhcccCCCccCc--EEeccCcccCCchhhhhcCCCCCCEEEEee
Q 018493 65 IYHEIHINSQATFGELKKLLTGPTGLHHEDQ--KLIYKDKERDSKAFLDVVGVKDKSKLVLVE 125 (355)
Q Consensus 65 ~~~~V~V~~~sTVgdLK~~I~e~TGVppe~Q--KLIykGK~ldD~~tLs~~GIKdgSkImLv~ 125 (355)
....++++...||.+|.+.|..... ..... .+..+|+..+.+ .-|++|+.|.++.
T Consensus 16 ~~~~~~~~~~~tv~~ll~~l~~~~p-~~~~v~~~v~vNg~~v~~~-----~~L~~gD~V~i~p 72 (77)
T 2q5w_D 16 AQEDIVLEQALTVQQFEDLLFERYP-QINNKKFQVAVNEEFVQKS-----DFIQPNDTVALIP 72 (77)
T ss_dssp SEEECCCSSCEEHHHHHHHHHHHCG-GGTTCCCEEEETTEEECTT-----SEECTTCEEEEEC
T ss_pred CEEEEECCCCCCHHHHHHHHHHHCc-chhcceEEEEECCEECCCC-----CCcCCCCEEEEEC
Confidence 3445667777899999999876531 01223 567788875432 5689999998874
No 171
>3onj_A T-snare VTI1; helix, HABC, protein transport; 1.92A {Saccharomyces cerevisiae} PDB: 3onl_C
Probab=50.80 E-value=23 Score=28.09 Aligned_cols=44 Identities=20% Similarity=0.160 Sum_probs=30.8
Q ss_pred hhhHhhHHHHHHHHHHhccCCCCChhhHHHHHHHHHHHHHHHHHHHHhh
Q 018493 179 EKDVLNLIELLMNQLLKLDGIMADGDVKLQRKMQVRRVQKYVETLDMLK 227 (355)
Q Consensus 179 eke~~~LsE~LMq~LLKLD~IeaeGdaR~qRK~~VkrVQ~~Le~LD~lk 227 (355)
|.+|..+.+-|.+.|-++=+. .|+ +||.+|+.|+..|+.++.+-
T Consensus 7 E~df~~~~~~i~~~l~~~~~~--~ge---~Rk~~i~~ie~~ldEA~ell 50 (97)
T 3onj_A 7 ESDFKTTLEQAKASLAEAPSQ--PLS---QRNTTLKHVEQQQDELFDLL 50 (97)
T ss_dssp HHHHHHHHHHHHHHHHHGGGS--CHH---HHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHhcc--ChH---HHHHHHHHHHHHHHHHHHHH
Confidence 456777777777766555432 343 78888999988888777665
No 172
>2juo_A GA-binding protein alpha chain; OST, ubiquitin, transcription factor, ensemble, DNA-binding, nucleus, transcription regulation; NMR {Mus musculus}
Probab=50.39 E-value=27 Score=27.95 Aligned_cols=57 Identities=25% Similarity=0.271 Sum_probs=48.8
Q ss_pred EEEEcCCCCHHHHHHHHhcccCCCccCcEEeccCcccCCchhhhhcCCCCCCEEEEe
Q 018493 68 EIHINSQATFGELKKLLTGPTGLHHEDQKLIYKDKERDSKAFLDVVGVKDKSKLVLV 124 (355)
Q Consensus 68 ~V~V~~~sTVgdLK~~I~e~TGVppe~QKLIykGK~ldD~~tLs~~GIKdgSkImLv 124 (355)
.-+++-..+++.||+.|+.+.|++-+.-.+...+..|+++.+|-+-||+-.-.|-+.
T Consensus 6 ~qhmDI~epL~~Lk~LLe~Rl~i~L~~y~f~LQd~~L~~~k~LvdQcVqgeGlVQin 62 (89)
T 2juo_A 6 SQAIDINEPIGNLKKLLEPRLQCSLDAHEICLQDIQLDPDRSLFDQGVKTDGTVQLS 62 (89)
T ss_dssp EEEEESSSBGGGHHHHSHHHHCSCCSSCEEEETTEECCTTSBTTTSSCCCCSEEEEE
T ss_pred hhhccccCcHHHHHHHHHHHhcCCcccCeEEeeccccCCCccHHHhhcccccEEEEE
Confidence 345777889999999999999999999999888888999999999999866555543
No 173
>1f2r_I Inhibitor of caspase-activated DNAse; alpha-beta roll, protein-protein complex, DNA binding protein; NMR {Mus musculus} SCOP: d.15.2.1
Probab=50.21 E-value=1e+02 Score=25.06 Aligned_cols=56 Identities=11% Similarity=0.168 Sum_probs=41.7
Q ss_pred EEEEcCCCCHHHHHHHHhcccCCCcc--CcEEe--ccCcccCCchhhhhcCCCCCCEEEEeec
Q 018493 68 EIHINSQATFGELKKLLTGPTGLHHE--DQKLI--YKDKERDSKAFLDVVGVKDKSKLVLVED 126 (355)
Q Consensus 68 ~V~V~~~sTVgdLK~~I~e~TGVppe--~QKLI--ykGK~ldD~~tLs~~GIKdgSkImLv~~ 126 (355)
..-|-+ .++.+|+.+....++|+.. .-.|+ ..|-+++|++++..+. ++..+|++..
T Consensus 31 k~GV~A-~SL~EL~~K~~~~l~l~~~~~~~~lvLeeDGT~VddEeYF~tLp--~nT~lmvL~~ 90 (100)
T 1f2r_I 31 QHGVAA-SSLEELRSKACELLAIDKSLTPITLVLAEDGTIVDDDDYFLCLP--SNTKFVALAC 90 (100)
T ss_dssp EEEEEE-SSHHHHHHHHHHHHCCCGGGCSCEEEESSSCCBCCSSSSSSSSC--SCCEEEEECS
T ss_pred EEeEEc-CCHHHHHHHHHHHhccCCCCCceEEEEeeCCcEEechhHhhcCC--CCCEEEEEcC
Confidence 334433 3899999999999999753 24443 4688899999988764 8888888763
No 174
>1wgr_A Growth factor receptor-bound protein 7; RA domain, GRB7, structural genomics, riken structural genomics/proteomics initiative, RSGI; NMR {Homo sapiens} SCOP: d.15.1.5
Probab=50.10 E-value=53 Score=26.59 Aligned_cols=75 Identities=12% Similarity=0.138 Sum_probs=51.1
Q ss_pred CCCeeEEEEEe-CCEEEEEEEcCCCCHHHHHHHHhcccCCCccC-cEEe------ccCcccCCchhh----hhcCCCCCC
Q 018493 52 PPPTIRVRVKY-GSIYHEIHINSQATFGELKKLLTGPTGLHHED-QKLI------YKDKERDSKAFL----DVVGVKDKS 119 (355)
Q Consensus 52 ~~~~I~V~VK~-gg~~~~V~V~~~sTVgdLK~~I~e~TGVppe~-QKLI------ykGK~ldD~~tL----s~~GIKdgS 119 (355)
....+.|+|-. .+....|.|++.+|++|+-+.|+++.++..+. --|+ +--+.++|.+.| ...++....
T Consensus 6 ~~~k~vvkvf~~Dgssksi~V~~~~Ta~dv~~~L~~K~~~~~~~~WaLvE~~P~L~~ER~~EDHE~vvevl~~W~~~s~n 85 (100)
T 1wgr_A 6 SGRPHVVKVYSEDGACRSVEVAAGATARHVCEMLVQRAHALSDETWGLVECHPHLALERGLEDHESVVEVQAAWPVGGDS 85 (100)
T ss_dssp CCSCEEEEEEETTSCEEEEEECTTCCHHHHHHHHHCSSSCCCCCCCCEEEEETTTTEEEEECSSSCHHHHHTTSCSSSCC
T ss_pred cCCCEEEEEEecCCCEEEEEECCCCcHHHHHHHHHHHcCCCCCCCeEEEEecCCCCcEEeccCchhHHHHHhhCccCCCc
Confidence 34455666655 45677999999999999999999999988542 2333 233447777654 445566677
Q ss_pred EEEEeec
Q 018493 120 KLVLVED 126 (355)
Q Consensus 120 kImLv~~ 126 (355)
+++...+
T Consensus 86 r~~F~kr 92 (100)
T 1wgr_A 86 RFVFRKN 92 (100)
T ss_dssp EEEECSC
T ss_pred EEEEecc
Confidence 7776554
No 175
>2ylm_A Ubiquitin carboxyl-terminal hydrolase 7; UBL; 2.70A {Homo sapiens}
Probab=50.05 E-value=9.5 Score=38.97 Aligned_cols=31 Identities=13% Similarity=0.306 Sum_probs=28.3
Q ss_pred EEEEcCCCCHHHHHHHHhcccCCCccCcEEe
Q 018493 68 EIHINSQATFGELKKLLTGPTGLHHEDQKLI 98 (355)
Q Consensus 68 ~V~V~~~sTVgdLK~~I~e~TGVppe~QKLI 98 (355)
.+.|..++|+.+|+..|++.+|+|+++|||-
T Consensus 39 ~~rv~k~~~~~~l~~~va~~lg~~~~~~RlW 69 (530)
T 2ylm_A 39 VFKVLKNSSLAEFVQSLSQTMGFPQDQIRLW 69 (530)
T ss_dssp EEEEETTSBHHHHHHHHHHHHTSCGGGEEEE
T ss_pred eEEEcCcCCHHHHHHHHHHHhCcCcccEEEE
Confidence 3568899999999999999999999999984
No 176
>3dwg_C 9.5 kDa culture filtrate antigen CFP10A; sulfur carrier protein complex, beta-grAsp fold, amino-acid biosynthesis; HET: PLP; 1.53A {Mycobacterium tuberculosis} PDB: 3dwm_A
Probab=48.56 E-value=30 Score=26.38 Aligned_cols=56 Identities=14% Similarity=0.204 Sum_probs=34.2
Q ss_pred EEEEcCCCCHHHHHHHHhcccC-CC------------ccCcEEeccCcccCCchhhhhcCCCCCCEEEEee
Q 018493 68 EIHINSQATFGELKKLLTGPTG-LH------------HEDQKLIYKDKERDSKAFLDVVGVKDKSKLVLVE 125 (355)
Q Consensus 68 ~V~V~~~sTVgdLK~~I~e~TG-Vp------------pe~QKLIykGK~ldD~~tLs~~GIKdgSkImLv~ 125 (355)
++++ ...||++|.+.|..... +. .....++.+|....+..-+ +.-|++|+.|.++.
T Consensus 20 ~~~~-~~~Tv~~ll~~L~~~~p~l~~~l~~~~~~g~~~~~~~v~VN~~~v~~~~~~-~~~L~~gDeV~i~P 88 (93)
T 3dwg_C 20 SVSA-SGDTLGAVISDLEANYSGISERLMDPSSPGKLHRFVNIYVNDEDVRFSGGL-ATAIADGDSVTILP 88 (93)
T ss_dssp EEEE-CCSBHHHHHHHHHHHSTTHHHHHBCSSSTTSBCTTEEEEETTEEGGGTTGG-GCBCCTTCEEEEEE
T ss_pred EEec-CCCCHHHHHHHHHHHChhHHHHHhccccCCcccCCEEEEECCEEccCcCCC-CcCCCCCCEEEEEC
Confidence 3554 45799999999987642 10 0123455566654332222 45689999999874
No 177
>2k5p_A THis protein, thiamine-biosynthesis protein; NESG, GMR137, structural genomics, PSI-2, protein structure initiative; NMR {Geobacter metallireducens gs-15} PDB: 3cwi_A
Probab=48.05 E-value=15 Score=28.10 Aligned_cols=58 Identities=14% Similarity=0.155 Sum_probs=41.9
Q ss_pred EEeCCEEEEEEEc--CCCCHHHHHHHHhcccCCC-ccCcEEeccCcccCCchhhhhcCCCCCCEEEEe
Q 018493 60 VKYGSIYHEIHIN--SQATFGELKKLLTGPTGLH-HEDQKLIYKDKERDSKAFLDVVGVKDKSKLVLV 124 (355)
Q Consensus 60 VK~gg~~~~V~V~--~~sTVgdLK~~I~e~TGVp-pe~QKLIykGK~ldD~~tLs~~GIKdgSkImLv 124 (355)
|.-+|+.+ +++ ...||.+|-+.+ |++ ++..-+.++|..+. .....+.-|++||+|-++
T Consensus 3 I~vNGe~~--e~~~~~~~Tl~~LL~~l----~~~~~~~vAVavNg~iVp-r~~~~~~~L~dGD~IEIv 63 (78)
T 2k5p_A 3 LTVNGKPS--TVDGAESLNVTELLSAL----KVAQAEYVTVELNGEVLE-REAFDATTVKDGDAVEFL 63 (78)
T ss_dssp EEETTEEE--ECSSCSCEEHHHHHHHH----TCSCTTTCCEEETTEECC-TTHHHHCEECSSBCEEEC
T ss_pred EEECCEEE--EcCCCCCCcHHHHHHHc----CCCCCCcEEEEECCEECC-hHHcCcccCCCCCEEEEE
Confidence 34456544 455 678999998765 677 77777888998754 334667789999999987
No 178
>3hm6_X Plexin-B1; structural genomics consortium, SGC, membrane, transmembrane receptor, cell membrane, glycoprotein, phosphoprotein; 2.40A {Homo sapiens} PDB: 3sua_D* 3su8_X*
Probab=47.82 E-value=52 Score=34.76 Aligned_cols=75 Identities=11% Similarity=0.096 Sum_probs=50.5
Q ss_pred CCCeeEEEEEeC-------CEEEEEEEcCCCCHHHHHHHHhcc--cCCCc------cCcEEecc----Ccc-cCCc----
Q 018493 52 PPPTIRVRVKYG-------SIYHEIHINSQATFGELKKLLTGP--TGLHH------EDQKLIYK----DKE-RDSK---- 107 (355)
Q Consensus 52 ~~~~I~V~VK~g-------g~~~~V~V~~~sTVgdLK~~I~e~--TGVpp------e~QKLIyk----GK~-ldD~---- 107 (355)
...++++.|... ...++|.|-..+||..+|++|-.. -|+|. ++.-|=++ |+. |.|.
T Consensus 254 e~~~ltL~v~~~~~~~~~~~~~i~VkVLdCDTItQVKeKiLDavYk~~pyS~rP~~~~~dLEwr~g~~g~~iL~D~D~ts 333 (644)
T 3hm6_X 254 EYRPLTLNALLAVGPGAGEAQGVPVKVLDCDTISQAKEKMLDQLYKGVPLTQRPDPRTLDVEWRSGVAGHLILSDEDVTS 333 (644)
T ss_dssp CCCEEEEEEECC-------CCCEEEEEETTSBHHHHHHHHHHHHTTTSCGGGSCCGGGEEEEEECSSSCEEEECSSSTTC
T ss_pred cceeEEEEEeecCccccCCCCceeeEeeccCcHHHHHHHHHHHHHcCCCcccCCCCCCcceEEeeCCCCceeecccCccc
Confidence 346677777641 234777888899999999988753 45553 34444442 222 3332
Q ss_pred ---------hhhhhcCCCCCCEEEEeec
Q 018493 108 ---------AFLDVVGVKDKSKLVLVED 126 (355)
Q Consensus 108 ---------~tLs~~GIKdgSkImLv~~ 126 (355)
.||..|+|+||++|-|+..
T Consensus 334 ~~~~~wkrLNTL~HY~V~dga~v~L~p~ 361 (644)
T 3hm6_X 334 EVQGLWRRLNTLQHYKVPDGATVALVPC 361 (644)
T ss_dssp CEETTEEECCBTTTTTCCTTCEEEEEEC
T ss_pred eecCcceeecchhhcCCCCCcEEEEEec
Confidence 3899999999999999854
No 179
>2dhz_A RAP guanine nucleotide exchange factor (GEF)- like 1; LINK guanine nucleotide exchange factor II, LINK-gefii, RA domain, structural genomics; NMR {Homo sapiens}
Probab=47.71 E-value=32 Score=28.89 Aligned_cols=72 Identities=17% Similarity=0.188 Sum_probs=51.7
Q ss_pred CCCeeEEEEEeCCE-EEEEEEcCCCCHHHHHHHHhcccCCCcc------CcEEe---ccCcc--cCCc--hhhhhcCCCC
Q 018493 52 PPPTIRVRVKYGSI-YHEIHINSQATFGELKKLLTGPTGLHHE------DQKLI---YKDKE--RDSK--AFLDVVGVKD 117 (355)
Q Consensus 52 ~~~~I~V~VK~gg~-~~~V~V~~~sTVgdLK~~I~e~TGVppe------~QKLI---ykGK~--ldD~--~tLs~~GIKd 117 (355)
+...|..+|-.... ...+.++...|+.+++..++++++..-+ .++|+ |.|-. +.++ .....+|+
T Consensus 6 ~~Dei~~~VY~~Dhsy~tvr~~v~~sa~eIl~~va~kl~~~e~~~~~~~~l~Lv~V~ssGEk~vlqp~d~sv~tsL~~-- 83 (120)
T 2dhz_A 6 SGDEIFCRVYMPDHSYVTIRSRLSASVQDILGSVTEKLQYSEEPAGREDSLILVAVSSSGEKVLLQPTEDCVFTALGI-- 83 (120)
T ss_dssp SCCCEEECEECTTSCCCCEEECTTCCHHHHHHHHHHHSTTCSSTTSCCSCCEEEEEETTCCCEECCTTCSCHHHHSCS--
T ss_pred CCCcEEEEEEeccCceEEEEEeccccHHHHHHHHHHHhccccccccccCceEEEEEccCCcEeecCCcceEEEeeccc--
Confidence 44567777776543 4468899999999999999999998654 78887 66654 4443 34555554
Q ss_pred CCEEEEee
Q 018493 118 KSKLVLVE 125 (355)
Q Consensus 118 gSkImLv~ 125 (355)
+.+|++..
T Consensus 84 NgRLfvc~ 91 (120)
T 2dhz_A 84 NSHLFACT 91 (120)
T ss_dssp SEEEEEEC
T ss_pred cceEEEee
Confidence 67788865
No 180
>2i1j_A Moesin; FERM, coiled-coil, C-ermad, ERM, radixin, ezrin, MER actin binding, masking, regulation, SELF-inhibition, cell A membrane protein; 2.10A {Spodoptera frugiperda} PDB: 2i1k_A 1e5w_A
Probab=46.73 E-value=45 Score=34.39 Aligned_cols=70 Identities=20% Similarity=0.093 Sum_probs=52.6
Q ss_pred CeeEEEEEeCCEEEEEEEcCCCCHHHHHHHHhcccCCCcc-CcEEecc---Cc--ccCCchhhhhcCCCCCCEEEE
Q 018493 54 PTIRVRVKYGSIYHEIHINSQATFGELKKLLTGPTGLHHE-DQKLIYK---DK--ERDSKAFLDVVGVKDKSKLVL 123 (355)
Q Consensus 54 ~~I~V~VK~gg~~~~V~V~~~sTVgdLK~~I~e~TGVppe-~QKLIyk---GK--~ldD~~tLs~~GIKdgSkImL 123 (355)
..|.|+|..-+.++.|.|++.+|+.+|-..|+...||... -.-|.|. |. .++.+.+|...+++.+..+.|
T Consensus 3 k~i~v~V~llDgt~e~~vd~~tt~~ell~~V~~~LgL~e~~~FGL~~~d~~~~~~WLd~~k~i~~q~~~~~~~~~L 78 (575)
T 2i1j_A 3 KSMNVRVTTMDAELEFAIQQTTTGKQLFDQVVKTIGLREVWFFGLQYTDSKGDLTWIKLYKKVMQQDVKKENPLQF 78 (575)
T ss_dssp CEEEEEEECSSCEEEEEEETTCBHHHHHHHHHHHHTCCCGGGEEEEEEBTTSCEEECCTTSBGGGSCBCCCSSEEE
T ss_pred ceEEEEEEeCCCeEEEEECCCCCHHHHHHHHHHHcCCCCccceeEEEEecCcchhHhhccccHHHhcccCCCCeEE
Confidence 4677888864336789999999999999999999999753 3455553 22 278888898888877765544
No 181
>2qyw_A Vesicle transport through interaction with T-SNAR homolog; HABC domain, protein transport, endocytosis; 2.00A {Mus musculus} PDB: 2v8s_V
Probab=43.54 E-value=50 Score=26.39 Aligned_cols=45 Identities=18% Similarity=0.089 Sum_probs=24.9
Q ss_pred hhhHhhHHHHHHHHHHhccCCCCChhhHHHHHHHHHHHHHHHHHHHHhh
Q 018493 179 EKDVLNLIELLMNQLLKLDGIMADGDVKLQRKMQVRRVQKYVETLDMLK 227 (355)
Q Consensus 179 eke~~~LsE~LMq~LLKLD~IeaeGdaR~qRK~~VkrVQ~~Le~LD~lk 227 (355)
|.+|..|...|.+.|-.+-+.. .| .+||..|++|+..|+..+.|-
T Consensus 21 E~df~~l~~~i~~kl~~i~~~~-~~---e~rk~~i~~ie~~ldEA~eLl 65 (102)
T 2qyw_A 21 HEIFRGLLEDLQGVPERLLGTA-GT---EEKKKLVRDFDEKQQEANETL 65 (102)
T ss_dssp HHHHHHHHHHHHHHHHHHHTCC-CS---HHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHhcccC-Cc---HHHHHHHHHHHHHHHHHHHHH
Confidence 4555566666655555442221 12 366666777777666666554
No 182
>2jrh_A Mitogen-activated protein kinase kinase kinase 3; kinase signaling domain, transferase; NMR {Homo sapiens} PDB: 2pph_A
Probab=41.97 E-value=64 Score=26.01 Aligned_cols=46 Identities=15% Similarity=0.270 Sum_probs=39.1
Q ss_pred eeEEEEEeCCEEEEEEEcCCCCHHHHHHHHhcccCCCccCcEEeccCcc
Q 018493 55 TIRVRVKYGSIYHEIHINSQATFGELKKLLTGPTGLHHEDQKLIYKDKE 103 (355)
Q Consensus 55 ~I~V~VK~gg~~~~V~V~~~sTVgdLK~~I~e~TGVppe~QKLIykGK~ 103 (355)
.++|+.-|.|++..|.++..-.+.||.+.+...+|-+ .-|.|-..+
T Consensus 4 dvRIKfE~~gEKRIi~f~RPvkf~dl~qkv~~afGq~---ldl~y~nnE 49 (94)
T 2jrh_A 4 DVRIKFEHNGERRIIAFSRPVKYEDVEHKVTTVFGQP---LDLHYMNNE 49 (94)
T ss_dssp CEEEEEEETTEEEEEEECSSCCHHHHHHHHHHHHCSS---EEEEEECSS
T ss_pred ceEEEEEecCceEEEecCCCccHHHHHHHHHHHhCCe---eeeEEecce
Confidence 4788888999999999999999999999999999955 446666544
No 183
>2ylm_A Ubiquitin carboxyl-terminal hydrolase 7; UBL; 2.70A {Homo sapiens}
Probab=41.54 E-value=60 Score=33.03 Aligned_cols=60 Identities=8% Similarity=0.069 Sum_probs=43.8
Q ss_pred EEEEEEEcCCCCHHHHHHHHhcccCCCc---cCcEEe--ccCcc---cCCchhhhhcCCCCCCEEEEe
Q 018493 65 IYHEIHINSQATFGELKKLLTGPTGLHH---EDQKLI--YKDKE---RDSKAFLDVVGVKDKSKLVLV 124 (355)
Q Consensus 65 ~~~~V~V~~~sTVgdLK~~I~e~TGVpp---e~QKLI--ykGK~---ldD~~tLs~~GIKdgSkImLv 124 (355)
..|.+-++.+.||+||-+.+..+.+++. ...+|+ |.||. ++++.+|+.+.=.....|.+-
T Consensus 352 ~~~~l~vpK~gtV~Dll~~l~k~~~~~~~~~~~lRl~ev~~~ki~ki~~~~~~i~~i~d~~~~~~rie 419 (530)
T 2ylm_A 352 EEITLYPDKHGCVRDLLEECKKAVELGEKASGKLRLLEIVSYKIIGVHQEDELLECLSPATSRTFRIE 419 (530)
T ss_dssp EEEEECCBTTCBHHHHHHHHHTTCCCCTTCCCCEEEEEEETTEEEEEECTTSBGGGSCCCTTCEEEEE
T ss_pred EEEEEEcCCCCCHHHHHHHHHHhcCCCcCCcccEEEEEEECCEEEEecCCCcccccccccccceEEEE
Confidence 3677889999999999999999999984 556664 88886 677777776533224444443
No 184
>2g1e_A Hypothetical protein TA0895; MOAD, molybdopterin, transferase; NMR {Thermoplasma acidophilum} PDB: 2k22_A
Probab=41.45 E-value=58 Score=24.29 Aligned_cols=57 Identities=19% Similarity=0.167 Sum_probs=36.2
Q ss_pred EEEEcCCCCHHHHHHHHhcccC------C-----CccCcEEeccCcccCCchhhhhcCCCCCCEEEEee
Q 018493 68 EIHINSQATFGELKKLLTGPTG------L-----HHEDQKLIYKDKERDSKAFLDVVGVKDKSKLVLVE 125 (355)
Q Consensus 68 ~V~V~~~sTVgdLK~~I~e~TG------V-----ppe~QKLIykGK~ldD~~tLs~~GIKdgSkImLv~ 125 (355)
+++++...||.+|.+.|..... + ......+..+|+...... -.+.-|++|+.|.++.
T Consensus 18 ~~~~~~~~tv~~ll~~l~~~~p~~~~~~l~~~~g~~~~v~v~vN~~~v~~~~-~~~~~l~~gD~V~i~p 85 (90)
T 2g1e_A 18 EETFNGISKISELLERLKVEYGSEFTKQMYDGNNLFKNVIILVNGNNITSMK-GLDTEIKDDDKIDLFP 85 (90)
T ss_dssp EEEESSCCBHHHHHHHHHHHSCHHHHHHHCCSSCSTTTCEEEESSSBGGGTC-SSSCBCCTTCEEEEEC
T ss_pred EEEcCCCCcHHHHHHHHHHHCcchhhhccccccCcCcceEEEECCEEccccC-CCCcCCCCCCEEEEeC
Confidence 3456667899999999876631 1 113345667777643211 1244589999998874
No 185
>4e61_A Protein BIM1; EB1-like motif, coiled-coil, spindle orientation, mitosis, K phosphorylation, mitotic spindle, microtubules, cell cycle; 2.45A {Saccharomyces cerevisiae}
Probab=41.40 E-value=54 Score=27.03 Aligned_cols=40 Identities=23% Similarity=0.289 Sum_probs=22.2
Q ss_pred hhHHHHHHHHHHhc--cCCCC--------Ch-hhHHHHHHHHHHHHHHHHH
Q 018493 183 LNLIELLMNQLLKL--DGIMA--------DG-DVKLQRKMQVRRVQKYVET 222 (355)
Q Consensus 183 ~~LsE~LMq~LLKL--D~Iea--------eG-daR~qRK~~VkrVQ~~Le~ 222 (355)
.+-+|.|++.-..+ .||.. .| +.-..=-.++++||++|=.
T Consensus 48 LRdIEiLcQe~~~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~kIq~ILYa 98 (106)
T 4e61_A 48 LRDIEILVHTTQDLINEGVYKFNDETITGHGNGNGGALLRFVKKVESILYA 98 (106)
T ss_dssp HHHHHHHHHHHHHHHHTTCCC--------------CHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhhhhccccccchhhcccccccchhHHHHHHHHHHHHhc
Confidence 34578999987666 34432 11 1111122578999998844
No 186
>2k9x_A Tburm1, uncharacterized protein; unknown function; NMR {Trypanosoma brucei}
Probab=40.33 E-value=14 Score=30.15 Aligned_cols=59 Identities=10% Similarity=0.143 Sum_probs=35.4
Q ss_pred EEEEEEEcC----CCCHHHHHHHHhcccCCCccCcEEecc-C--c------ccCCch---hhh--hcCCCCCCEEEEee
Q 018493 65 IYHEIHINS----QATFGELKKLLTGPTGLHHEDQKLIYK-D--K------ERDSKA---FLD--VVGVKDKSKLVLVE 125 (355)
Q Consensus 65 ~~~~V~V~~----~sTVgdLK~~I~e~TGVppe~QKLIyk-G--K------~ldD~~---tLs--~~GIKdgSkImLv~ 125 (355)
+.+.|+++. ..||++|=+.|.+.. +..+-+|+.. | . ++-++. .|. +|-|++||.|.++.
T Consensus 21 ~~~~v~l~~~~g~~~TV~dLl~~L~~~~--~~~r~~lf~~~g~~~lrpgIlVLVNg~d~e~l~gldt~L~dgD~V~fis 97 (110)
T 2k9x_A 21 KQTSLQLDGVVPTGTNLNGLVQLLKTNY--VKERPDLLVDQTGQTLRPGILVLVNSCDAEVVGGMDYVLNDGDTVEFIS 97 (110)
T ss_dssp SCSEECCCCSCGGGCCHHHHHHHHTTTT--CCSCHHHHBCSSSSSBCTTEEEEESSSBHHHHTSSCCCCCSSCEEEEEE
T ss_pred CeEEEEeCCcCCCCccHHHHHHHHHHHc--cccchhhEecCCCcccCCCeEEEECCeeeeccCCcccCCCCcCEEEEeC
Confidence 356788883 359999999988875 2223344322 3 1 122222 232 36699999988764
No 187
>3r8s_T 50S ribosomal protein L23; protein biosynthesis, RNA, tRNA, transfer RNA, 23S ribosomal subunit, ribosome recycling factor, RRF, ribosome; 3.00A {Escherichia coli} PDB: 3fik_T 3j19_T 2wwq_T 3oat_T* 3oas_T* 3ofd_T 3ofc_T 3ofr_T* 3ofz_T* 3og0_T 3ofq_T 3r8t_T 2j28_T 3e1b_M 3e1d_M 3iy9_T 3i1n_T 1p85_R 1p86_R 1vs8_T ...
Probab=38.17 E-value=75 Score=25.27 Aligned_cols=57 Identities=19% Similarity=0.156 Sum_probs=43.3
Q ss_pred EEEEEEEcCCCCHHHHHHHHhcccCCCccCcE-EeccCcccCCchhhhhcCCCCCCEEEEe
Q 018493 65 IYHEIHINSQATFGELKKLLTGPTGLHHEDQK-LIYKDKERDSKAFLDVVGVKDKSKLVLV 124 (355)
Q Consensus 65 ~~~~V~V~~~sTVgdLK~~I~e~TGVppe~QK-LIykGK~ldD~~tLs~~GIKdgSkImLv 124 (355)
..|.+.|+..+|=-++|+.|+..+||.+..-. |++.||.+.... ..|-+++-+-..+
T Consensus 28 n~~~F~V~~~AnK~eIK~AVE~lf~VkV~~VnT~~~~gK~kR~g~---~~G~~~~~KKAiV 85 (93)
T 3r8s_T 28 NTIVLKVAKDATKAEIKAAVQKLFEVEVEVVNTLVVKGKVKRHGQ---RIGRRSDWKKAYV 85 (93)
T ss_dssp SEEEEEECSSCCHHHHHHHHHHHSCCCCCEEEEEEECCCBCCSSS---SCCBCCCEEEEEE
T ss_pred CEEEEEECCCCCHHHHHHHHHHHcCCceEEEEEEEeCCceeeeCC---ccccCCCcEEEEE
Confidence 46889999999999999999999999998765 678888754332 2455555554433
No 188
>1ibx_B Chimera of IGG binding protein G and DNA fragmentation factor 45; DFF40, DFF45, protein-protein complex, CIDE, CIDE domain complex; HET: DNA; NMR {Streptococcus SP} SCOP: d.15.2.1
Probab=37.77 E-value=31 Score=29.96 Aligned_cols=50 Identities=10% Similarity=0.185 Sum_probs=40.1
Q ss_pred CCHHHHHHHHhcccCCCc--cCcEEe--ccCcccCCchhhhhcCCCCCCEEEEeec
Q 018493 75 ATFGELKKLLTGPTGLHH--EDQKLI--YKDKERDSKAFLDVVGVKDKSKLVLVED 126 (355)
Q Consensus 75 sTVgdLK~~I~e~TGVpp--e~QKLI--ykGK~ldD~~tLs~~GIKdgSkImLv~~ 126 (355)
.++.+|+.+..+.++|+. ..-.|+ ..|-+++|++++..+. ++..+|++..
T Consensus 82 ~SL~EL~~K~~~kL~l~~~~~~~~LvLeeDGTeVddEeYF~tLp--~nT~LmvL~~ 135 (145)
T 1ibx_B 82 SCLEDLRSKACDILAIDKSLTPVTLVLAEDGTIVDDDDYFLCLP--SNTKFVALAS 135 (145)
T ss_dssp SSHHHHHHHHHHHHTCSCTTSCCEEEETTTCCBCSSHHHHHHSC--SSCBEEEECS
T ss_pred CCHHHHHHHHHHHhcCCCCccccEEEEeeCCcEEechhHhhcCC--CCCEEEEECC
Confidence 499999999999999975 344443 5688899999988875 8888888863
No 189
>1pqs_A Cell division control protein 24; alpha and beta protein, cell cycle; NMR {Saccharomyces cerevisiae} SCOP: d.15.2.2 PDB: 1tz1_A
Probab=37.45 E-value=23 Score=27.35 Aligned_cols=36 Identities=14% Similarity=0.202 Sum_probs=29.2
Q ss_pred EEEEEEcCCCCHHHHHHHHhcccCCC-----ccCcEEeccC
Q 018493 66 YHEIHINSQATFGELKKLLTGPTGLH-----HEDQKLIYKD 101 (355)
Q Consensus 66 ~~~V~V~~~sTVgdLK~~I~e~TGVp-----pe~QKLIykG 101 (355)
.+.|-|+++.++.+|..+|..+.++. ....+|-|+.
T Consensus 3 ~~~i~V~~~i~f~~L~~kI~~kl~~~~~~~~~~~~~lkYkD 43 (77)
T 1pqs_A 3 IFTLLVEKVWNFDDLIMAINSKISNTHNNNISPITKIKYQD 43 (77)
T ss_dssp EEEEECTTCCCSHHHHHHHHHHTTTTTSSCSCSTTCCEEEE
T ss_pred EEEEEeCCCCCHHHHHHHHHHHHcccccccccceeEEEEEc
Confidence 46678999999999999999999975 3556666665
No 190
>3ig3_A Plxna3 protein; plexin intracellular GAP RBD inactive, membrane, transmembra membrane protein, signaling protein; 1.99A {Mus musculus} PDB: 3ryt_A*
Probab=37.42 E-value=1.1e+02 Score=32.28 Aligned_cols=75 Identities=19% Similarity=0.174 Sum_probs=50.9
Q ss_pred CCCeeEEEEEeC----CEEEEEEEcCCCCHHHHHHHHhcc--cCCC------ccCcEEecc----Ccc-cCC--------
Q 018493 52 PPPTIRVRVKYG----SIYHEIHINSQATFGELKKLLTGP--TGLH------HEDQKLIYK----DKE-RDS-------- 106 (355)
Q Consensus 52 ~~~~I~V~VK~g----g~~~~V~V~~~sTVgdLK~~I~e~--TGVp------pe~QKLIyk----GK~-ldD-------- 106 (355)
...++++.|... ...++|.|-..+||..+|++|-.. -|+| +++.-|=++ |+. |.|
T Consensus 230 e~~~ltL~v~~~~~~~~~~i~vkVLdCDTItQVKeKiLdavYk~~pyS~rP~~~~~dLEwr~g~~g~~iL~D~D~ts~~~ 309 (627)
T 3ig3_A 230 DYKTLTLHCVCPESEGSAQVPVKVLNCDSITQAKDKLLDTVYKGIPYSQRPKAEDMDLEWRQGRMARIILQDEDITTKIE 309 (627)
T ss_dssp CCCEEEEEEECTTTC--CEEEEEEETTCBHHHHHHHHHHHHTTTSCGGGSCCGGGEEEEEESCSSCEEEECSSSTTCCEE
T ss_pred cceeEEEEEeccCCCCCCceeeEeeccCcHHHHHHHHHHHHHcCCCcccCCCCCccceeEeeCCCCceeeccCCcccccc
Confidence 346678887642 356778888899999999988764 3554 344555442 222 222
Q ss_pred -----chhhhhcCCCCCCEEEEeec
Q 018493 107 -----KAFLDVVGVKDKSKLVLVED 126 (355)
Q Consensus 107 -----~~tLs~~GIKdgSkImLv~~ 126 (355)
-.||..|+|+||++|-|+..
T Consensus 310 ~~wkrLNTL~HY~V~Dga~v~L~p~ 334 (627)
T 3ig3_A 310 CDWKRVNSLAHYQVTDGSLVALVPK 334 (627)
T ss_dssp TTEEECCBTTTTTCCTTCEEEEEEC
T ss_pred CceeEecchhhcCCCCCceEEEEec
Confidence 13789999999999999864
No 191
>2kmc_A Fermitin family homolog 1; kindlin, cytoskeleton, integrin, N-terminal, talin, cell adhesion, cell junction, cell membrane, cell projection; NMR {Mus musculus}
Probab=36.39 E-value=1.5e+02 Score=24.27 Aligned_cols=61 Identities=16% Similarity=0.277 Sum_probs=44.4
Q ss_pred EEEEEEEcCCCCHHHHHHHHhcccCCCcc--CcEEeccCcc---cCCchhhhhcCCCCCCEEEEee
Q 018493 65 IYHEIHINSQATFGELKKLLTGPTGLHHE--DQKLIYKDKE---RDSKAFLDVVGVKDKSKLVLVE 125 (355)
Q Consensus 65 ~~~~V~V~~~sTVgdLK~~I~e~TGVppe--~QKLIykGK~---ldD~~tLs~~GIKdgSkImLv~ 125 (355)
....+.|..+.-||-|-.+|.+..+++-+ +--|-.--|. +...-+|..|||...+.++...
T Consensus 33 ~~~~lrV~GdlHIGGvmlklVEki~i~~dWSDhaLWW~~k~~WLlkt~~tLDkygiqADa~L~ftp 98 (102)
T 2kmc_A 33 TEITLRVSGDLHIGGVMLKLVEQMNIAQDWSDYALWWEQKRCWLLKTHWTLDKCGVQADANLLFTP 98 (102)
T ss_dssp EEEEEEECSCCBHHHHHHHHHHHHCCSSCCSSEEEEETTTTEEECCTTSBHHHHTCCTTSCEEEEE
T ss_pred ccEEEEEeeccccchhhhhhhhhcccccchHHhhhhhhhhchhhhhhhhhhhhhceeeeeeeeccC
Confidence 33455677778999999999988877743 4444433332 5677899999999999888754
No 192
>1j0g_A Hypothetical protein 1810045K17; ubiquitin-like fold, structural genomics, riken structural genomics/proteomics initiative, RSGI, unknown function; NMR {Mus musculus} SCOP: d.15.1.6 PDB: 1wxs_A 1l7y_A
Probab=35.52 E-value=1.7e+02 Score=23.28 Aligned_cols=72 Identities=13% Similarity=0.199 Sum_probs=57.7
Q ss_pred CeeEEEEEeC---CE-EEEEEEcCCCCHHHHHHHHhcccCCCccCcEEeccCcc-cCCchhhhhcCCCCCCEEEEee
Q 018493 54 PTIRVRVKYG---SI-YHEIHINSQATFGELKKLLTGPTGLHHEDQKLIYKDKE-RDSKAFLDVVGVKDKSKLVLVE 125 (355)
Q Consensus 54 ~~I~V~VK~g---g~-~~~V~V~~~sTVgdLK~~I~e~TGVppe~QKLIykGK~-ldD~~tLs~~GIKdgSkImLv~ 125 (355)
..++++|..- .. ...++||..+.|..+-+-.++.+.||+..--+|-.... .....+-...=+|.|+.|-|+.
T Consensus 9 ~kVtFkItltSdpklpfkvlsVPE~~PftAVlkfaaEeF~vp~~TsAiiT~dGiGInP~QtAGnvFlKhGseLrlIP 85 (92)
T 1j0g_A 9 SKVSFKITLTSDPRLPYKVLSVPESTPFTAVLKFAAEEFKVPAATSAIITNDGIGINPAQTAGNVFLKHGSELRIIP 85 (92)
T ss_dssp CEEEEEEEETTSTTCCEEEEEEETTSBHHHHHHHHHHHTTCCSSSEEEECTTSCCCCCSSBHHHHHHHTCSEEEEEE
T ss_pred ceEEEEEEEccCCCCCceEEecCccCchHHHHHHHHHHcCCCccceEEEecCCcccChhhccchhhhhcCceeEecc
Confidence 4455555532 22 34578999999999999999999999988888877666 8888888888899999999985
No 193
>2npt_B Mitogen-activated protein kinase kinase kinase 2; MAP2K5, MEK5, MKK PRKMK5, MAP kinase kinase 5, PHOX, PHOX-domain; 1.75A {Homo sapiens} SCOP: d.15.2.2
Probab=33.49 E-value=67 Score=26.18 Aligned_cols=47 Identities=15% Similarity=0.216 Sum_probs=39.2
Q ss_pred CeeEEEEEeCCEEEEEEEcCCCCHHHHHHHHhcccCCCccCcEEeccCcc
Q 018493 54 PTIRVRVKYGSIYHEIHINSQATFGELKKLLTGPTGLHHEDQKLIYKDKE 103 (355)
Q Consensus 54 ~~I~V~VK~gg~~~~V~V~~~sTVgdLK~~I~e~TGVppe~QKLIykGK~ 103 (355)
..++|+.-|.|++..|.++..-.+.||.+.+...+|-. .-|.|-..+
T Consensus 19 ~dvRIKfE~~gEkRIi~f~RPv~f~el~~kv~~afGq~---ldl~y~nnE 65 (100)
T 2npt_B 19 NDVRVKFEHRGEKRILQFPRPVKLEDLRSKAKIAFGQS---MDLHYTNNE 65 (100)
T ss_dssp CCEEEEEEETTEEEEEEECSSCCHHHHHHHHHHHHTSC---EEEEEEETT
T ss_pred cceEEEEEecCceEEEecCCCccHHHHHHHHHHHhCCe---eeeEEecce
Confidence 35888888999999999999999999999999999955 446665443
No 194
>2c60_A Human mitogen-activated protein kinase kinase kinase 3 isoform 2; MAP3K3, MAP/ERK kinase kinase 3, MAPKKK3, MEKK3, serine threonine phosphorylation; HET: MSE; 1.25A {Homo sapiens} SCOP: d.15.2.2 PDB: 2o2v_B
Probab=32.37 E-value=76 Score=26.21 Aligned_cols=47 Identities=15% Similarity=0.268 Sum_probs=39.5
Q ss_pred CeeEEEEEeCCEEEEEEEcCCCCHHHHHHHHhcccCCCccCcEEeccCcc
Q 018493 54 PTIRVRVKYGSIYHEIHINSQATFGELKKLLTGPTGLHHEDQKLIYKDKE 103 (355)
Q Consensus 54 ~~I~V~VK~gg~~~~V~V~~~sTVgdLK~~I~e~TGVppe~QKLIykGK~ 103 (355)
..++|+.-|.|++..|.++..-.+.||.+.+...+|-+ .-|.|-..+
T Consensus 30 ~dvRIKfE~~gEKRIiqf~RPvkf~dl~qkv~~afGq~---ldl~y~nnE 76 (111)
T 2c60_A 30 SDVRIKFEHNGERRIIAFSRPVKYEDVEHKVTTVFGQP---LDLHYMNNE 76 (111)
T ss_dssp CCEEEEEEETTEEEEEEECSSCCHHHHHHHHHHHHSSC---CEEEEECSS
T ss_pred cceEEEEEecCceEEEecCCCccHHHHHHHHHHHhCCe---eeeEEecce
Confidence 35888888999999999999999999999999999965 446665443
No 195
>1d4b_A CIDE B, human cell death-inducing effector B; alpha/beta roll, apoptosis; NMR {Homo sapiens} SCOP: d.15.2.1
Probab=30.15 E-value=19 Score=30.38 Aligned_cols=48 Identities=21% Similarity=0.219 Sum_probs=38.0
Q ss_pred CHHHHHHHHhcccCCCccCcEEe--ccCcccCCchhhhhcCCCCCCEEEEeec
Q 018493 76 TFGELKKLLTGPTGLHHEDQKLI--YKDKERDSKAFLDVVGVKDKSKLVLVED 126 (355)
Q Consensus 76 TVgdLK~~I~e~TGVppe~QKLI--ykGK~ldD~~tLs~~GIKdgSkImLv~~ 126 (355)
++.||+.+..+..+|. ..-.|+ ..|-+.+|++++..+. ++..+|++..
T Consensus 55 SL~EL~~K~~~~l~l~-~~~~lvLeeDGT~VddEeYF~tLp--~nT~lmvL~~ 104 (122)
T 1d4b_A 55 TRQELLAKALETLLLN-GVLTLVLEEDGTAVDSEDFFQLLE--DDTCLMVLQS 104 (122)
T ss_dssp CSSTHHHHHHHHHSCC-SSCEEEETTTTEEECSTHHHHHSS--SCCCCCEECS
T ss_pred CHHHHHHHHHHHhccC-CCcEEEEEeCCcEEechhHhhcCC--CCCEEEEecC
Confidence 8899999999999994 344443 4688899999988875 8888888764
No 196
>3u52_E Phenol hydroxylase component PHO; 4-helix bundle, dioxygen, hydrocarbons, oxidore; HET: MPO EPE; 1.95A {Pseudomonas stutzeri} PDB: 2inn_E* 2inp_E
Probab=28.94 E-value=95 Score=26.07 Aligned_cols=71 Identities=18% Similarity=0.246 Sum_probs=52.4
Q ss_pred CeeEEEEEeCC-----EEEEEEEcCCCCHHHHHHHH-hcccCCCcc-------CcEEeccCcc--cCCchhhhhcCCCCC
Q 018493 54 PTIRVRVKYGS-----IYHEIHINSQATFGELKKLL-TGPTGLHHE-------DQKLIYKDKE--RDSKAFLDVVGVKDK 118 (355)
Q Consensus 54 ~~I~V~VK~gg-----~~~~V~V~~~sTVgdLK~~I-~e~TGVppe-------~QKLIykGK~--ldD~~tLs~~GIKdg 118 (355)
...-|.|-|.. .-+.+.|++++++++|-+.+ ....+..|+ .-.-+-.|+. -|.+.+|.+.||...
T Consensus 22 g~qLlYigWd~HllFcap~~~p~pP~mpFg~lv~~vl~~~~~~hPDfa~idws~v~W~l~g~pftPD~~kSLaenG~~HK 101 (119)
T 3u52_E 22 GMQLLYVYWPDHLLFCAPFALLVQPGMTFSALVDEILKPATAAHPDSAKADFLNAEWLLNDEPFTPKADASLKEQGIDHK 101 (119)
T ss_dssp TCEEEEEECTTCTTSCSCEEEEECTTSBHHHHHHHTHHHHTTTSTTGGGCCTTSSEEEETTEEECCCTTSBTTTTTCCTT
T ss_pred CCEEEEEEecCCeeecCceeecCCCCCCHHHHHHHhcchhhhcCCccccCCcchheEEECCccCCCChhhhHHHcCCCch
Confidence 34667777754 23678899999999998554 445777765 3344556776 578899999999999
Q ss_pred CEEEEe
Q 018493 119 SKLVLV 124 (355)
Q Consensus 119 SkImLv 124 (355)
|.|-..
T Consensus 102 s~lrf~ 107 (119)
T 3u52_E 102 SMLTVT 107 (119)
T ss_dssp EEEEEE
T ss_pred heEEEe
Confidence 988775
No 197
>3zsu_A TLL2057 protein, cyanoq; photosystem II assembly, photosynthesis, extrinsic protein; 1.60A {Thermosynechococcus elongatus}
Probab=27.52 E-value=2.1e+02 Score=24.16 Aligned_cols=47 Identities=13% Similarity=0.079 Sum_probs=32.3
Q ss_pred CCcchhhHhhHHHHHHHHHHhccCCCCChh---hHHHHHHHHHHHHHHHH
Q 018493 175 GKVAEKDVLNLIELLMNQLLKLDGIMADGD---VKLQRKMQVRRVQKYVE 221 (355)
Q Consensus 175 ~Kv~eke~~~LsE~LMq~LLKLD~IeaeGd---aR~qRK~~VkrVQ~~Le 221 (355)
.+...++.+.|+..|...|++||.-...++ +..+=.+.|.-..+||+
T Consensus 75 lp~dqk~A~~lak~l~~~L~~LD~AA~~~n~~~a~k~Y~~a~adfdafl~ 124 (130)
T 3zsu_A 75 LAKDQPTPTALTRALTDDFLKIDQGADLDSVTVAQEGFREAEADFKAYLN 124 (130)
T ss_dssp CGGGSHHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHH
T ss_pred CHhhHHHHHHHHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHHHH
Confidence 344478999999999999999998755443 44444455555555554
No 198
>3qij_A Protein 4.1; cytoskeleton, structural genomics, structural genomics conso SGC; 1.80A {Homo sapiens} PDB: 1gg3_A 3bin_A 2he7_A 2rq1_A
Probab=26.43 E-value=1.1e+02 Score=28.20 Aligned_cols=73 Identities=15% Similarity=-0.030 Sum_probs=50.4
Q ss_pred CCCeeEEEEEe-CCEEEEEEEcCCCCHHHHHHHHhcccCCCccC-cEEecc---Ccc--cCCchhhhhcCCCCCCEEEEe
Q 018493 52 PPPTIRVRVKY-GSIYHEIHINSQATFGELKKLLTGPTGLHHED-QKLIYK---DKE--RDSKAFLDVVGVKDKSKLVLV 124 (355)
Q Consensus 52 ~~~~I~V~VK~-gg~~~~V~V~~~sTVgdLK~~I~e~TGVppe~-QKLIyk---GK~--ldD~~tLs~~GIKdgSkImLv 124 (355)
....|.++|.. ++....+.|++.+|+.||-+.|++..||.... .-|.|. |.. ++.+.+|.+.......++.+.
T Consensus 14 ~~~~~~~~V~lldgt~~~~~vd~~tt~~el~~~v~~~l~L~e~~~FgL~~~~~~~~~~wLd~~k~i~~q~~~~~~~l~fr 93 (296)
T 3qij_A 14 LYFQGHCKVSLLDDTVYECVVEKHAKGQDLLKRVCEHLNLLEEDYFGLAIWDNATSKTWLDSAKEIKKQVRGVPWNFTFN 93 (296)
T ss_dssp ---CCEEEEECTTSCEEEEECCTTCBHHHHHHHHHHHHTCSSGGGEEEEEEEETTEEEECCTTSBHHHHC---CCEEEEE
T ss_pred CCceEEEEEEccCCCEEEEEECCCCCHHHHHHHHHHHcCCCCcceeEEEEEcCCCccchhccchhHHHhcCCCCcEEEEE
Confidence 34568888885 66788999999999999999999999998543 455553 222 787888887754444455544
No 199
>2ns5_A Partitioning-defective 3 homolog; cell polarity, N-terminal domain, PB1 domain, asymmetric membrane localization, signaling protein; NMR {Rattus norvegicus}
Probab=26.04 E-value=2.4e+02 Score=22.16 Aligned_cols=69 Identities=19% Similarity=0.139 Sum_probs=46.0
Q ss_pred eeEEEEEeCCEEEEEEE-cCCCCHHHHHHHHhcc----cCCCcc-CcE---Eec-cCcccCCchhhhhcCCCCCCEEEEe
Q 018493 55 TIRVRVKYGSIYHEIHI-NSQATFGELKKLLTGP----TGLHHE-DQK---LIY-KDKERDSKAFLDVVGVKDKSKLVLV 124 (355)
Q Consensus 55 ~I~V~VK~gg~~~~V~V-~~~sTVgdLK~~I~e~----TGVppe-~QK---LIy-kGK~ldD~~tLs~~GIKdgSkImLv 124 (355)
.++|+|..|+.++-|.- +...||.+|-++.... .+-.++ ... |-+ .|..||.+..|.+. +.|++.|.-+
T Consensus 2 ~MKvtV~fg~~~vvVPC~dg~~tV~~L~~~A~~RY~K~~~k~~~~~v~V~~l~~~~ggiLD~DD~l~dV-ldD~e~i~A~ 80 (85)
T 2ns5_A 2 EFKVTVCFGRTRVDVPCGDGRMKVFSLIQQAVTRYRKAVAKDPNYWIQVHRLEHGDGGILDLDDILCDV-ADDKDRLVAV 80 (85)
T ss_dssp CEEEEEEETTEEEEEEESSSCCCHHHHHHHHHHHHHHHTTCCTTSCEEEEEEECSSSCEECTTSCHHHH-SCTTEEEEEE
T ss_pred ccEEEEEECCEEEEEECCCCcccHHHHHHHHHHHHHHhcCCCCCcEEEEEEEEeCCCcEeCcccchhhh-ccCcceEEEE
Confidence 36999999998887765 4456999997655432 444232 222 335 55669988888887 5677776554
No 200
>3ls0_A SLL1638 protein, PSBQ; photosynthesis, four helix bundle; 1.80A {Synechocystis SP} PDB: 3ls1_A
Probab=24.63 E-value=2.7e+02 Score=23.58 Aligned_cols=44 Identities=16% Similarity=0.310 Sum_probs=30.4
Q ss_pred chhhHhhHHHHHHHHHHhccCCCCChh---hHHHHHHHHHHHHHHHH
Q 018493 178 AEKDVLNLIELLMNQLLKLDGIMADGD---VKLQRKMQVRRVQKYVE 221 (355)
Q Consensus 178 ~eke~~~LsE~LMq~LLKLD~IeaeGd---aR~qRK~~VkrVQ~~Le 221 (355)
..++.+.|+..|...|++||.-...++ +..+=.+.|.-..+||+
T Consensus 81 dqk~A~~lak~l~~~L~~LD~AA~~~n~~~a~k~Y~~a~adfdafl~ 127 (133)
T 3ls0_A 81 DQDKAKTLAKEVFGHLERLDAAAKDRNGSQAKIQYQEALADFDSFLN 127 (133)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHH
T ss_pred hhHHHHHHHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHHHH
Confidence 367899999999999999998755443 44444445555555544
No 201
>3tve_T 50S ribosomal protein L23; RNA, ribosome, tRNA, translation, mRNA; 3.10A {Thermus thermophilus} PDB: 3pyr_T 3pyo_T 3pyv_T 3pyt_T 3tvh_T 1n88_A 1vsa_R 1vsp_R 2hgj_W 2hgq_W 2hgu_W 2j01_X 2j03_X 2jl6_X 2jl8_X 2v47_X 2v49_X 2wdi_X 2wdj_X 2wdl_X ...
Probab=24.04 E-value=80 Score=25.07 Aligned_cols=55 Identities=15% Similarity=0.116 Sum_probs=41.2
Q ss_pred EEEEEEEcCCCCHHHHHHHHhcccCCCccCcE-EeccCcccCCchhhhhcCCCCCCEEE
Q 018493 65 IYHEIHINSQATFGELKKLLTGPTGLHHEDQK-LIYKDKERDSKAFLDVVGVKDKSKLV 122 (355)
Q Consensus 65 ~~~~V~V~~~sTVgdLK~~I~e~TGVppe~QK-LIykGK~ldD~~tLs~~GIKdgSkIm 122 (355)
..|.+.|+..+|=-++|+.|+..+||.+.... |++.||.+.... ..|-+++-+-.
T Consensus 22 n~~~F~V~~~AnK~qIK~aVe~lf~VkV~~VnT~~~~gK~kR~g~---~~G~~~~~KKA 77 (92)
T 3tve_T 22 GKYTFWVHPKATKTEIKNAVETAFKVKVVKVNTLHVRGKKKRLGR---YLGKRPDRKKA 77 (92)
T ss_dssp TEEEEEECTTCCHHHHHHHHHHHTTCCEEEEEEEEECCCEEESSS---CEEECCCEEEE
T ss_pred CEEEEEECCCCCHHHHHHHHHHHhCCceeeeeeeeeCCceeeecc---ccccCCCceEE
Confidence 46888899999999999999999999998765 668888754322 23455555433
No 202
>2zjr_Q 50S ribosomal protein L23; ribosome, large ribosomal subunit, ribonucleoprotein, RNA-binding, rRNA-binding, tRNA-binding, methylation; 2.91A {Deinococcus radiodurans} SCOP: d.12.1.1 PDB: 1sm1_R* 2aar_R 2d3o_R 2zjp_Q* 2zjq_Q 1nkw_R 3cf5_Q* 3dll_Q* 3pio_Q* 3pip_Q* 1nwy_R* 1nwx_R* 1xbp_R* 1pnu_R 1pny_R 1vor_U 1vou_U 1vow_U 1voy_U 1vp0_U
Probab=23.70 E-value=1.2e+02 Score=24.06 Aligned_cols=55 Identities=16% Similarity=0.236 Sum_probs=41.6
Q ss_pred EEEEEcCCCCHHHHHHHHhcccCCCccCcE-EeccCcccCCchhhhhcCCCCCCEEEEe
Q 018493 67 HEIHINSQATFGELKKLLTGPTGLHHEDQK-LIYKDKERDSKAFLDVVGVKDKSKLVLV 124 (355)
Q Consensus 67 ~~V~V~~~sTVgdLK~~I~e~TGVppe~QK-LIykGK~ldD~~tLs~~GIKdgSkImLv 124 (355)
|.+.|++.+|=-++|+.|+..+||.+.... |++.||.+.... ..|-+.+-+-..+
T Consensus 25 y~F~V~~~anK~eIK~aVE~lf~VkV~~VNT~~~~gK~kR~g~---~~G~~~~~KKAiV 80 (95)
T 2zjr_Q 25 YSFWVSPKATKTEIKDAIQQAFGVRVIGISTMNVPGKRKRVGR---FIGQRNDRKKAIV 80 (95)
T ss_dssp CEEEECSSCTHHHHHHHHHHHHCCCCSEEEECCBCCCCCSSSS---CCCCCCCBEEEEE
T ss_pred EEEEEcCCCCHHHHHHHHHHHhCCCceEEEeEEeCCccceecc---ccccCCCcEEEEE
Confidence 788999999999999999999999998776 568888754321 2455666554443
No 203
>3m91_B Prokaryotic ubiquitin-like protein PUP; coil COIL alpha helix, ATP-binding, chaperone, nucleotide-BI proteasome, S-nitrosylation; 1.80A {Mycobacterium tuberculosis}
Probab=21.48 E-value=1.2e+02 Score=21.32 Aligned_cols=33 Identities=9% Similarity=0.077 Sum_probs=23.6
Q ss_pred hHHHHHHHHHHHHHHHHHHHHhhhhcCCCCCCC
Q 018493 205 VKLQRKMQVRRVQKYVETLDMLKIKNSMPSSNK 237 (355)
Q Consensus 205 aR~qRK~~VkrVQ~~Le~LD~lk~~n~~~~~~~ 237 (355)
.+.+.+.....|-++|+.+|.+...||..|..+
T Consensus 5 ~~~~~~~~~~~~D~lLDeId~vLE~NAeeFV~~ 37 (44)
T 3m91_B 5 GQERREKLTEETDDLLDEIDDVLEENAEDFVRA 37 (44)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHTC------
T ss_pred hHHHHHhhhhhHHHHHHHHHHHHHHhHHHHHHH
Confidence 456777788889999999999999999877654
No 204
>2zjd_A Microtubule-associated proteins 1A/1B light chain 3B precursor; autophagy, LC3, microtubule-associated protein 1 light chain 3, cytoplasm, cytoplasmic vesicle, lipoprotein; 1.56A {Homo sapiens} SCOP: d.15.1.3 PDB: 2z0e_B 2zzp_B 2z0d_B 1ugm_A 1v49_A 2k6q_A 3eci_A
Probab=20.98 E-value=1.5e+02 Score=24.86 Aligned_cols=54 Identities=11% Similarity=0.127 Sum_probs=38.4
Q ss_pred EEEcCCCCHHHHHHHHhcccCCCccCcEEe-ccCcc-cCCchhhhhc----CCCCCCEEE
Q 018493 69 IHINSQATFGELKKLLTGPTGLHHEDQKLI-YKDKE-RDSKAFLDVV----GVKDKSKLV 122 (355)
Q Consensus 69 V~V~~~sTVgdLK~~I~e~TGVppe~QKLI-ykGK~-ldD~~tLs~~----GIKdgSkIm 122 (355)
.-|+.+.||++|...|-...++++++--.+ |-+.. ...+.++.++ +-.||--.+
T Consensus 57 flVp~~~tv~qf~~~iRkrL~l~~~~alFl~~vn~~~p~~~~~m~~lY~~~kdeDGfLyv 116 (130)
T 2zjd_A 57 FLVPDHVNMSELIKIIRRRLQLNANQAFFLLVNGHSMVSVSTPISEVYESEKDEDGFLYM 116 (130)
T ss_dssp EEEETTCBHHHHHHHHHHHHTCCTTCCEEEEETTTEECCTTSBHHHHHHHHCCTTSCEEE
T ss_pred EEcCCCCcHHHHHHHHHHHhCCCCCceEEEEEECCccCCccchHHHHHHHhCCCCCEEEE
Confidence 458999999999999999999999876655 77775 3444455443 445564333
Done!