BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 018494
(355 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|3OH8|A Chain A, Crystal Structure Of The Nucleoside-Diphosphate Sugar
Epimerase From Corynebacterium Glutamicum. Northeast
Structural Genomics Consortium Target Cgr91
Length = 516
Score = 153 bits (386), Expect = 1e-37, Method: Compositional matrix adjust.
Identities = 101/307 (32%), Positives = 152/307 (49%), Gaps = 17/307 (5%)
Query: 47 KASQMTVSVTGATGFIGRRLVQRLQADNHQVRVLTRSRSKAELIFPGKKTRFFPGVMIAE 106
S +TV++TG+ G +GR L +LQ H+V L R K PGK RF+ + A
Sbjct: 144 DGSPLTVAITGSRGLVGRALTAQLQTGGHEVIQLVRKEPK-----PGK--RFWDPLNPAS 196
Query: 107 EPQWRDCIQGSTAVVNLAGTPIGTRWSSEIKKEIKESRIRVTSKVVDLINESPEGVRPSV 166
D + G+ +V+LAG PI R++ K+ I+ESR+ T + +L+ ES + +
Sbjct: 197 -----DLLDGADVLVHLAGEPIFGRFNDSHKEAIRESRVLPTKFLAELVAESTQCT--TX 249
Query: 167 LELVKPKYLMRAAHQEMITWLSDYCAKVYCLVCREWE-GTALKVNKDVRLALIRIGIVLG 225
+ + E++T S+ VCR+WE TA + R+A IR G+ L
Sbjct: 250 ISASAVGFYGHDRGDEILTEESESGDDFLAEVCRDWEHATAPASDAGKRVAFIRTGVALS 309
Query: 226 KDGGALAKMIPLFMMFAGGPLGSGQQWFSWIHLDDIVNLIYEALSNPSYRGVINGTAPNP 285
GG L + LF GG G G WFSWI +DD+ ++ Y A+ + G IN APNP
Sbjct: 310 GRGGXLPLLKTLFSTGLGGKFGDGTSWFSWIAIDDLTDIYYRAIVDAQISGPINAVAPNP 369
Query: 286 VRLAEMCDHLGNVLGRPSWLPVPEFALKAVLG-EGA-FVVLEGQRVVPARAKELGFPFKY 343
V A+ L RP+++ +P K +LG +GA + L QR PA + L F+Y
Sbjct: 370 VSNADXTKILATSXHRPAFIQIPSLGPKILLGSQGAEELALASQRTAPAALENLSHTFRY 429
Query: 344 RYVKDAL 350
+ A+
Sbjct: 430 TDIGAAI 436
>pdb|4B4O|A Chain A, Crystal Structure Of Human Epimerase Family Protein
Sdr39u1 (Isoform2) With Nadph
pdb|4B4O|B Chain B, Crystal Structure Of Human Epimerase Family Protein
Sdr39u1 (Isoform2) With Nadph
pdb|4B4O|C Chain C, Crystal Structure Of Human Epimerase Family Protein
Sdr39u1 (Isoform2) With Nadph
pdb|4B4O|D Chain D, Crystal Structure Of Human Epimerase Family Protein
Sdr39u1 (Isoform2) With Nadph
pdb|4B4O|E Chain E, Crystal Structure Of Human Epimerase Family Protein
Sdr39u1 (Isoform2) With Nadph
pdb|4B4O|F Chain F, Crystal Structure Of Human Epimerase Family Protein
Sdr39u1 (Isoform2) With Nadph
pdb|4B4O|G Chain G, Crystal Structure Of Human Epimerase Family Protein
Sdr39u1 (Isoform2) With Nadph
pdb|4B4O|H Chain H, Crystal Structure Of Human Epimerase Family Protein
Sdr39u1 (Isoform2) With Nadph
Length = 298
Score = 120 bits (301), Expect = 1e-27, Method: Compositional matrix adjust.
Identities = 97/305 (31%), Positives = 146/305 (47%), Gaps = 20/305 (6%)
Query: 53 VSVTGATGFIGRRLVQRLQADNHQVRVLTRSRSKAELIFPGKKTRFFPGVMIAEEPQWRD 112
V V G TGFIG L Q L A H+V +++R PG PG + +E
Sbjct: 3 VLVGGGTGFIGTALTQLLNARGHEVTLVSRK--------PG------PGRITWDELA-AS 47
Query: 113 CIQGSTAVVNLAGTPIGT---RWSSEIKKEIKESRIRVTSKVVDLINESPEGVRPSVLEL 169
+ A VNLAG I RW+ +KE+ SR+ T + I ++P+ + VL +
Sbjct: 48 GLPSCDAAVNLAGENILNPLRRWNETFQKEVLGSRLETTQLLAKAITKAPQPPKAWVL-V 106
Query: 170 VKPKYLMRAAHQEMITWLSDYCAKVYCLVCREWEGTALKVNKDVRLALIRIGIVLGKDGG 229
Y + E + + +WE A R ++R G+VLG+ GG
Sbjct: 107 TGVAYYQPSLTAEYDEDSPGGDFDFFSNLVTKWEAAARLPGDSTRQVVVRSGVVLGRGGG 166
Query: 230 ALAKMIPLFMMFAGGPLGSGQQWFSWIHLDDIVNLIYEALSNPSYRGVINGTAPNPVRLA 289
A + F + GGP+GSG Q+F WIH+ D+ ++ AL GV+NG AP+ A
Sbjct: 167 AXGHXLLPFRLGLGGPIGSGHQFFPWIHIGDLAGILTHALEANHVHGVLNGVAPSSATNA 226
Query: 290 EMCDHLGNVLGRPSWLPVPEFALKAVLG-EGAFVVLEGQRVVPARAKELGFPFKYRYVKD 348
E G LGR +++P+P ++AV G + A +LEGQ+V+P R G+ + + +
Sbjct: 227 EFAQTFGAALGRRAFIPLPSAVVQAVFGRQRAIXLLEGQKVIPRRTLATGYQYSFPELGA 286
Query: 349 ALKAI 353
ALK I
Sbjct: 287 ALKEI 291
>pdb|2C29|D Chain D, Structure Of Dihydroflavonol Reductase From Vitis Vinifera
At 1.8 A.
pdb|2C29|F Chain F, Structure Of Dihydroflavonol Reductase From Vitis Vinifera
At 1.8 A.
pdb|2IOD|A Chain A, Binding Of Two Substrate Analogue Molecules To
Dihydroflavonol-4-Reductase Alters The Functional
Geometry Of The Catalytic Site
pdb|2IOD|B Chain B, Binding Of Two Substrate Analogue Molecules To
Dihydroflavonol-4-Reductase Alters The Functional
Geometry Of The Catalytic Site
pdb|2IOD|C Chain C, Binding Of Two Substrate Analogue Molecules To
Dihydroflavonol-4-Reductase Alters The Functional
Geometry Of The Catalytic Site
pdb|2IOD|D Chain D, Binding Of Two Substrate Analogue Molecules To
Dihydroflavonol-4-Reductase Alters The Functional
Geometry Of The Catalytic Site
pdb|2NNL|D Chain D, Binding Of Two Substrate Analogue Molecules To
Dihydroflavonol-4-Reductase Alters The Functional
Geometry Of The Catalytic Site
pdb|2NNL|F Chain F, Binding Of Two Substrate Analogue Molecules To
Dihydroflavonol-4-Reductase Alters The Functional
Geometry Of The Catalytic Site
pdb|3C1T|A Chain A, Binding Of Two Substrate Analogue Molecules To
Dihydroflavonol 4-Reductase Alters The Functional
Geometry Of The Catalytic Site
pdb|3C1T|B Chain B, Binding Of Two Substrate Analogue Molecules To
Dihydroflavonol 4-Reductase Alters The Functional
Geometry Of The Catalytic Site
pdb|3C1T|C Chain C, Binding Of Two Substrate Analogue Molecules To
Dihydroflavonol 4-Reductase Alters The Functional
Geometry Of The Catalytic Site
pdb|3C1T|D Chain D, Binding Of Two Substrate Analogue Molecules To
Dihydroflavonol 4-Reductase Alters The Functional
Geometry Of The Catalytic Site
pdb|3BXX|A Chain A, Binding Of Two Substrate Analogue Molecules To
Dihydroflavonol 4-Reductase Alters The Functional
Geometry Of The Catalytic Site
pdb|3BXX|B Chain B, Binding Of Two Substrate Analogue Molecules To
Dihydroflavonol 4-Reductase Alters The Functional
Geometry Of The Catalytic Site
pdb|3BXX|C Chain C, Binding Of Two Substrate Analogue Molecules To
Dihydroflavonol 4-Reductase Alters The Functional
Geometry Of The Catalytic Site
pdb|3BXX|D Chain D, Binding Of Two Substrate Analogue Molecules To
Dihydroflavonol 4-Reductase Alters The Functional
Geometry Of The Catalytic Site
pdb|3BXX|E Chain E, Binding Of Two Substrate Analogue Molecules To
Dihydroflavonol 4-Reductase Alters The Functional
Geometry Of The Catalytic Site
pdb|3BXX|F Chain F, Binding Of Two Substrate Analogue Molecules To
Dihydroflavonol 4-Reductase Alters The Functional
Geometry Of The Catalytic Site
Length = 337
Score = 40.0 bits (92), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 63/255 (24%), Positives = 100/255 (39%), Gaps = 42/255 (16%)
Query: 52 TVSVTGATGFIGRRLVQRLQADNHQVRVLTRS-----RSKAELIFPGKKTRF-FPGVMIA 105
TV VTGA+GFIG LV RL + VR R + K L P +T +A
Sbjct: 7 TVCVTGASGFIGSWLVMRLLERGYTVRATVRDPTNVKKVKHLLDLPKAETHLTLWKADLA 66
Query: 106 EEPQWRDCIQGSTAVVNLAGTPIGTRWSSEIKKEIKESRIR---------VTSKVVDLIN 156
+E + + I+G T V ++A TP+ S + + E+ + I +K V +
Sbjct: 67 DEGSFDEAIKGCTGVFHVA-TPMDFE-SKDPENEVIKPTIEGMLGIMKSCAAAKTVRRLV 124
Query: 157 ESPEGVRPSVLELVKPKY---------LMRAAHQEMITWLSDYCAKVYCLVCREWEGTAL 207
+ ++ E P Y RA ++M W+ Y + E A
Sbjct: 125 FTSSAGTVNIQEHQLPVYDESCWSDMEFCRA--KKMTAWM-------YFVSKTLAEQAAW 175
Query: 208 KVNKDVRLALIRIGIVLGKDGGALAKMIPLFMMFAGGPLGSGQQWFS------WIHLDDI 261
K K+ + I I L G + +P ++ A P+ + +S ++HLDD+
Sbjct: 176 KYAKENNIDFITIIPTLVV-GPFIMSSMPPSLITALSPITGNEAHYSIIRQGQFVHLDDL 234
Query: 262 VNLIYEALSNPSYRG 276
N NP G
Sbjct: 235 CNAHIYLFENPKAEG 249
>pdb|3EHE|A Chain A, Crystal Structure Of Udp-Glucose 4 Epimerase (Gale-1) From
Archaeoglobus Fulgidus
pdb|3EHE|B Chain B, Crystal Structure Of Udp-Glucose 4 Epimerase (Gale-1) From
Archaeoglobus Fulgidus
Length = 313
Score = 40.0 bits (92), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 58/262 (22%), Positives = 106/262 (40%), Gaps = 34/262 (12%)
Query: 53 VSVTGATGFIGRRLVQRLQADNHQVRVLTRSRSKAELIFPGKKTRFFPGVMIAEEPQWRD 112
+ VTG GFIG +V +L N V + S E F + R + A++ +D
Sbjct: 4 IVVTGGAGFIGSHVVDKLSESNEIVVIDNLSSGNEE--FVNEAARLVKADLAADD--IKD 59
Query: 113 CIQGSTAVVNLAGTPIGTRWSSEIKKEIKESRIRVTSKVVDLINESPEGVRPSVLELVKP 172
++G+ V ++A P R +E EI + + T ++++ + ++ GV V
Sbjct: 60 YLKGAEEVWHIAANP-DVRIGAENPDEIYRNNVLATYRLLEAMRKA--GVSRIVFTSTST 116
Query: 173 KYLMRAAHQEMITWLSDY---------CAKVYCLVCREWEGTALKVNKDVRLALIRIGIV 223
Y ++I DY +K+ C E D++ + R V
Sbjct: 117 VY----GEAKVIPTPEDYPTHPISLYGASKLACEALIESYCHTF----DMQAWIYRFANV 168
Query: 224 LGKDGGALAKMIPLFMMFAGGP-----LGSGQQWFSWIHLDDIVNLIYEALSNPSYRGVI 278
+G+ + M P LG+G+Q S+I++ D V+ + L +
Sbjct: 169 IGRR-STHGVIYDFIMKLKRNPEELEILGNGEQNKSYIYISDCVDAMLFGLRGDERVNIF 227
Query: 279 NGTAPNPV---RLAEM-CDHLG 296
N + + + R+AE+ C+ LG
Sbjct: 228 NIGSEDQIKVKRIAEIVCEELG 249
>pdb|3M2P|A Chain A, The Crystal Structure Of Udp-N-Acetylglucosamine
4-Epimerase From Bacillus Cereus
pdb|3M2P|B Chain B, The Crystal Structure Of Udp-N-Acetylglucosamine
4-Epimerase From Bacillus Cereus
pdb|3M2P|C Chain C, The Crystal Structure Of Udp-N-Acetylglucosamine
4-Epimerase From Bacillus Cereus
pdb|3M2P|D Chain D, The Crystal Structure Of Udp-N-Acetylglucosamine
4-Epimerase From Bacillus Cereus
pdb|3M2P|E Chain E, The Crystal Structure Of Udp-N-Acetylglucosamine
4-Epimerase From Bacillus Cereus
pdb|3M2P|F Chain F, The Crystal Structure Of Udp-N-Acetylglucosamine
4-Epimerase From Bacillus Cereus
Length = 311
Score = 33.5 bits (75), Expect = 0.17, Method: Compositional matrix adjust.
Identities = 13/33 (39%), Positives = 24/33 (72%)
Query: 51 MTVSVTGATGFIGRRLVQRLQADNHQVRVLTRS 83
+ ++VTG TGF+G+ +V+ ++ D + +LTRS
Sbjct: 3 LKIAVTGGTGFLGQYVVESIKNDGNTPIILTRS 35
>pdb|1Y1P|A Chain A, X-Ray Structure Of Aldehyde Reductase With Nadph
pdb|1Y1P|B Chain B, X-Ray Structure Of Aldehyde Reductase With Nadph
pdb|1ZZE|A Chain A, X-Ray Structure Of Nadph-Dependent Carbonyl Reductase From
Sporobolomyces Salmonicolor
pdb|1ZZE|B Chain B, X-Ray Structure Of Nadph-Dependent Carbonyl Reductase From
Sporobolomyces Salmonicolor
Length = 342
Score = 33.5 bits (75), Expect = 0.19, Method: Compositional matrix adjust.
Identities = 24/81 (29%), Positives = 42/81 (51%), Gaps = 12/81 (14%)
Query: 53 VSVTGATGFIGRRLVQRLQADNHQVRVLTRSRSKA-------ELIFPGKKTRFFPGVM-- 103
V VTGA GF+ +V++L ++VR RS SK + +PG RF V+
Sbjct: 14 VLVTGANGFVASHVVEQLLEHGYKVRGTARSASKLANLQKRWDAKYPG---RFETAVVED 70
Query: 104 IAEEPQWRDCIQGSTAVVNLA 124
+ ++ + + I+G+ V ++A
Sbjct: 71 MLKQGAYDEVIKGAAGVAHIA 91
>pdb|2Z5L|A Chain A, The First Ketoreductase Of The Tylosin Pks
Length = 511
Score = 32.7 bits (73), Expect = 0.28, Method: Compositional matrix adjust.
Identities = 17/33 (51%), Positives = 21/33 (63%)
Query: 52 TVSVTGATGFIGRRLVQRLQADNHQVRVLTRSR 84
TV +TG G IGRRL +RL A+ + VLT R
Sbjct: 261 TVLITGGMGAIGRRLARRLAAEGAERLVLTSRR 293
>pdb|1UJM|A Chain A, Crystal Structure Of Aldehyde Reductase 2 From
Sporobolomyces Salmonicolor Aku4429
pdb|1UJM|B Chain B, Crystal Structure Of Aldehyde Reductase 2 From
Sporobolomyces Salmonicolor Aku4429
Length = 342
Score = 32.3 bits (72), Expect = 0.41, Method: Compositional matrix adjust.
Identities = 24/81 (29%), Positives = 41/81 (50%), Gaps = 12/81 (14%)
Query: 53 VSVTGATGFIGRRLVQRLQADNHQVRVLTRSRSKA-------ELIFPGKKTRFFPGVM-- 103
V VTGA GF+ +V++L ++VR RS SK + +PG RF V+
Sbjct: 14 VLVTGANGFVASHVVEQLLEHGYKVRGTARSASKLANLQKRWDAKYPG---RFETAVVED 70
Query: 104 IAEEPQWRDCIQGSTAVVNLA 124
++ + + I+G+ V ++A
Sbjct: 71 XLKQGAYDEVIKGAAGVAHIA 91
>pdb|4F6L|B Chain B, Crystal Structure Of Aureusimine Biosynthetic Cluster
Reductase Domain
pdb|4F6L|A Chain A, Crystal Structure Of Aureusimine Biosynthetic Cluster
Reductase Domain
Length = 508
Score = 31.2 bits (69), Expect = 0.89, Method: Compositional matrix adjust.
Identities = 12/32 (37%), Positives = 22/32 (68%)
Query: 55 VTGATGFIGRRLVQRLQADNHQVRVLTRSRSK 86
+TGATGF+G L++ LQ +H++ R+ ++
Sbjct: 155 LTGATGFLGAYLIEALQGYSHRIYCFIRADNE 186
>pdb|4F6C|A Chain A, Crystal Structure Of Aureusimine Biosynthetic Cluster
Reductase Domain
pdb|4F6C|B Chain B, Crystal Structure Of Aureusimine Biosynthetic Cluster
Reductase Domain
Length = 427
Score = 30.8 bits (68), Expect = 1.1, Method: Compositional matrix adjust.
Identities = 12/32 (37%), Positives = 22/32 (68%)
Query: 55 VTGATGFIGRRLVQRLQADNHQVRVLTRSRSK 86
+TGATGF+G L++ LQ +H++ R+ ++
Sbjct: 74 LTGATGFLGAYLIEALQGYSHRIYCFIRADNE 105
>pdb|2B69|A Chain A, Crystal Structure Of Human Udp-Glucoronic Acid
Decarboxylase
Length = 343
Score = 30.8 bits (68), Expect = 1.3, Method: Compositional matrix adjust.
Identities = 13/37 (35%), Positives = 21/37 (56%), Gaps = 1/37 (2%)
Query: 44 HTQKASQMTVSVTGATGFIGRRLVQRLQADNHQVRVL 80
H +K + + +TG GF+G L +L D H+V V+
Sbjct: 22 HXEK-DRKRILITGGAGFVGSHLTDKLXXDGHEVTVV 57
>pdb|2GN4|A Chain A, Crystal Structure Of Udp-Glcnac Inverting 4,6-Dehydratase
In Complex With Nadph And Udp-Glcnac
pdb|2GN4|B Chain B, Crystal Structure Of Udp-Glcnac Inverting 4,6-Dehydratase
In Complex With Nadph And Udp-Glcnac
pdb|2GN6|A Chain A, Crystal Structure Of Udp-Glcnac Inverting 4,6-Dehydratase
In Complex With Nadp And Udp-Glcnac
pdb|2GN6|B Chain B, Crystal Structure Of Udp-Glcnac Inverting 4,6-Dehydratase
In Complex With Nadp And Udp-Glcnac
pdb|2GN8|A Chain A, Crystal Structure Of Udp-Glcnac Inverting 4,6-Dehydratase
In Complex With Nadp And Udp
pdb|2GN8|B Chain B, Crystal Structure Of Udp-Glcnac Inverting 4,6-Dehydratase
In Complex With Nadp And Udp
pdb|2GN9|A Chain A, Crystal Structure Of Udp-glcnac Inverting 4,6-dehydratase
In Complex With Nadp And Udp-glc
pdb|2GN9|B Chain B, Crystal Structure Of Udp-glcnac Inverting 4,6-dehydratase
In Complex With Nadp And Udp-glc
pdb|2GNA|A Chain A, Crystal Structure Of Udp-Glcnac Inverting 4,6-Dehydratase
In Complex With Nadp And Udp-Gal
pdb|2GNA|B Chain B, Crystal Structure Of Udp-Glcnac Inverting 4,6-Dehydratase
In Complex With Nadp And Udp-Gal
Length = 344
Score = 30.4 bits (67), Expect = 1.4, Method: Compositional matrix adjust.
Identities = 47/241 (19%), Positives = 96/241 (39%), Gaps = 36/241 (14%)
Query: 43 DHTQKASQMTVSVTGATGFIGRRLVQRLQADNHQVRVLTRSR-----SKAELIFPGKKTR 97
+H T+ +TG TG G+ V+++ + +++ SR S+ + F + R
Sbjct: 14 NHQNMLDNQTILITGGTGSFGKCFVRKVLDTTNAKKIIVYSRDELKQSEMAMEFNDPRMR 73
Query: 98 FFPGVMIAEEPQWRDCIQGSTAVVNLAG---TPIGTRWSSE-IKKEIKESRIRVTSKVVD 153
FF G + + + ++G ++ A PI E IK I + +
Sbjct: 74 FFIGD-VRDLERLNYALEGVDICIHAAALKHVPIAEYNPLECIKTNIMGAS--------N 124
Query: 154 LINESPEGVRPSVLELVKPKYLMRAAHQEMITWLSDYCAKVYCLVCREWEGTALKVNKDV 213
+IN + V+ L K AA+ + + C+ + ++G++
Sbjct: 125 VINACLKNAISQVIALSTDK----AANPINLYGATKLCSDKLFVSANNFKGSS-----QT 175
Query: 214 RLALIRIGIVLGKDGGALAKMIPLFMMFAGG-----PLGSGQQWFSWIHLDDIVNLIYEA 268
+ +++R G V+G G ++P F P+ + WI LD+ V+ + ++
Sbjct: 176 QFSVVRYGNVVGSRGS----VVPFFKKLVQNKASEIPITDIRMTRFWITLDEGVSFVLKS 231
Query: 269 L 269
L
Sbjct: 232 L 232
>pdb|3ICP|A Chain A, Crystal Structure Of Udp-Galactose 4-Epimerase
pdb|3KO8|A Chain A, Crystal Structure Of Udp-Galactose 4-Epimerase
Length = 312
Score = 30.4 bits (67), Expect = 1.4, Method: Compositional matrix adjust.
Identities = 28/107 (26%), Positives = 43/107 (40%), Gaps = 13/107 (12%)
Query: 51 MTVSVTGATGFIGRRLVQRLQADNHQVRVLTR-SRSKAELIFPGKKTRFFPGVMIAEEPQ 109
M + VTG GFIG LV +L ++V V+ S + E + P + V ++
Sbjct: 1 MRIVVTGGAGFIGSHLVDKLVELGYEVVVVDNLSSGRREFVNPSAELH----VRDLKDYS 56
Query: 110 WRDCIQGSTAVVNLAGTPIGTRWSSEIKKEIKESRIRVTSKVVDLIN 156
W I+G V + A P E++ E + VV N
Sbjct: 57 WGAGIKGDV-VFHFAANP-------EVRLSTTEPIVHFNENVVATFN 95
>pdb|4EF7|A Chain A, Udp-Xylose Synthase
pdb|4EF7|B Chain B, Udp-Xylose Synthase
pdb|4GLL|A Chain A, Crystal Structure Of Human Udp-Xylose Synthase.
pdb|4GLL|B Chain B, Crystal Structure Of Human Udp-Xylose Synthase
Length = 337
Score = 30.4 bits (67), Expect = 1.5, Method: Compositional matrix adjust.
Identities = 11/28 (39%), Positives = 17/28 (60%)
Query: 53 VSVTGATGFIGRRLVQRLQADNHQVRVL 80
+ +TG GF+G L +L D H+V V+
Sbjct: 8 ILITGGAGFVGSHLTDKLMMDGHEVTVV 35
>pdb|2C59|A Chain A, Gdp-Mannose-3', 5' -Epimerase (Arabidopsis Thaliana),
With Gdp-Alpha-D-Mannose And Gdp-Beta-L-Galactose Bound
In The Active Site.
pdb|2C59|B Chain B, Gdp-Mannose-3', 5' -Epimerase (Arabidopsis Thaliana),
With Gdp-Alpha-D-Mannose And Gdp-Beta-L-Galactose Bound
In The Active Site
Length = 379
Score = 30.4 bits (67), Expect = 1.6, Method: Compositional matrix adjust.
Identities = 11/30 (36%), Positives = 19/30 (63%)
Query: 48 ASQMTVSVTGATGFIGRRLVQRLQADNHQV 77
+ + +S+TGA GFI + +RL+ + H V
Sbjct: 27 SENLKISITGAGGFIASHIARRLKHEGHYV 56
>pdb|2C5A|A Chain A, Gdp-Mannose-3', 5' -Epimerase (Arabidopsis Thaliana),
Y174f, With Gdp-Beta-L-Galactose Bound In The Active
Site
pdb|2C5A|B Chain B, Gdp-Mannose-3', 5' -Epimerase (Arabidopsis Thaliana),
Y174f, With Gdp-Beta-L-Galactose Bound In The Active
Site
Length = 379
Score = 30.4 bits (67), Expect = 1.6, Method: Compositional matrix adjust.
Identities = 11/30 (36%), Positives = 19/30 (63%)
Query: 48 ASQMTVSVTGATGFIGRRLVQRLQADNHQV 77
+ + +S+TGA GFI + +RL+ + H V
Sbjct: 27 SENLKISITGAGGFIASHIARRLKHEGHYV 56
>pdb|2C5E|A Chain A, Gdp-Mannose-3', 5' -Epimerase (Arabidopsis Thaliana),
K217a, With Gdp-Alpha-D-Mannose Bound In The Active
Site.
pdb|2C5E|B Chain B, Gdp-Mannose-3', 5' -Epimerase (Arabidopsis Thaliana),
K217a, With Gdp-Alpha-D-Mannose Bound In The Active
Site
Length = 379
Score = 30.4 bits (67), Expect = 1.6, Method: Compositional matrix adjust.
Identities = 11/30 (36%), Positives = 19/30 (63%)
Query: 48 ASQMTVSVTGATGFIGRRLVQRLQADNHQV 77
+ + +S+TGA GFI + +RL+ + H V
Sbjct: 27 SENLKISITGAGGFIASHIARRLKHEGHYV 56
>pdb|2C54|A Chain A, Gdp-Mannose-3', 5' -Epimerase (Arabidopsis Thaliana),
K178r, With Gdp-Beta-L-Gulose And
Gdp-4-Keto-Beta-L-Gulose Bound In Active Site.
pdb|2C54|B Chain B, Gdp-Mannose-3', 5' -Epimerase (Arabidopsis Thaliana),
K178r, With Gdp-Beta-L-Gulose And
Gdp-4-Keto-Beta-L-Gulose Bound In Active Site
Length = 379
Score = 30.4 bits (67), Expect = 1.7, Method: Compositional matrix adjust.
Identities = 11/30 (36%), Positives = 19/30 (63%)
Query: 48 ASQMTVSVTGATGFIGRRLVQRLQADNHQV 77
+ + +S+TGA GFI + +RL+ + H V
Sbjct: 27 SENLKISITGAGGFIASHIARRLKHEGHYV 56
>pdb|3IX6|A Chain A, Crystal Structure Of Thymidylate Synthase Thya From
Brucella Melitensis
pdb|3IX6|B Chain B, Crystal Structure Of Thymidylate Synthase Thya From
Brucella Melitensis
Length = 360
Score = 30.0 bits (66), Expect = 1.9, Method: Compositional matrix adjust.
Identities = 22/57 (38%), Positives = 28/57 (49%), Gaps = 8/57 (14%)
Query: 243 GGPLGS--GQQWFSWI-----HLDDIVNLIYEALSNPSYRGVINGTAPNPVRLAEMC 292
G LG G QW SW H+D I NL+ +NP R +I +A NP + EM
Sbjct: 183 NGDLGPVYGYQWRSWPAPDGRHIDQIANLLKMLHTNPQSRRLIV-SAWNPALVDEMA 238
>pdb|3IUS|A Chain A, The Structure Of A Functionally Unknown Conserved Protein
From Silicibacter Pomeroyi Dss
pdb|3IUS|B Chain B, The Structure Of A Functionally Unknown Conserved Protein
From Silicibacter Pomeroyi Dss
Length = 286
Score = 29.6 bits (65), Expect = 2.3, Method: Compositional matrix adjust.
Identities = 28/106 (26%), Positives = 45/106 (42%), Gaps = 2/106 (1%)
Query: 251 QWFSWIHLDDIVNLIYEALSNPSYRGVINGTAPNPVRLAEMCDHLGNVLGRPSWLPVPEF 310
Q FS IH++DI ++ + + P V N PV ++ + + G P P +F
Sbjct: 178 QVFSRIHVEDIAQVLAASXARPDPGAVYNVCDDEPVPPQDVIAYAAELQGLP-LPPAVDF 236
Query: 311 ALKAVLGEGAFVVLEGQRVVPARAK-ELGFPFKYRYVKDALKAIMS 355
+ E +RV R K ELG KY + L+A+ +
Sbjct: 237 DKADLTPXARSFYSENKRVRNDRIKEELGVRLKYPNYRVGLEALQA 282
>pdb|2NTN|A Chain A, Crystal Structure Of Maba-c60v/g139a/s144l
pdb|2NTN|B Chain B, Crystal Structure Of Maba-c60v/g139a/s144l
Length = 267
Score = 29.6 bits (65), Expect = 2.5, Method: Compositional matrix adjust.
Identities = 16/40 (40%), Positives = 21/40 (52%)
Query: 52 TVSVTGATGFIGRRLVQRLQADNHQVRVLTRSRSKAELIF 91
+V VTG IG + QRL AD H+V V R + +F
Sbjct: 37 SVLVTGGNRGIGLAIAQRLAADGHKVAVTHRGSGAPKGLF 76
>pdb|1UZL|A Chain A, Maba From Mycobacterium Tuberculosis
pdb|1UZL|B Chain B, Maba From Mycobacterium Tuberculosis
Length = 247
Score = 29.6 bits (65), Expect = 2.6, Method: Compositional matrix adjust.
Identities = 16/40 (40%), Positives = 21/40 (52%)
Query: 52 TVSVTGATGFIGRRLVQRLQADNHQVRVLTRSRSKAELIF 91
+V VTG IG + QRL AD H+V V R + +F
Sbjct: 17 SVLVTGGNRGIGLAIAQRLAADGHKVAVTHRGSGAPKGLF 56
>pdb|2YV3|A Chain A, Crystal Structure Of Aspartate Semialdehyde Dehydrogenase
From Thermus Thermophilus Hb8
pdb|2YV3|B Chain B, Crystal Structure Of Aspartate Semialdehyde Dehydrogenase
From Thermus Thermophilus Hb8
Length = 331
Score = 29.6 bits (65), Expect = 2.7, Method: Compositional matrix adjust.
Identities = 19/54 (35%), Positives = 30/54 (55%), Gaps = 4/54 (7%)
Query: 51 MTVSVTGATGFIGRRLVQRLQADN---HQVRVLTRSRSKA-ELIFPGKKTRFFP 100
M V+V GATG +GR +++ L+A N ++R+ RS L F G++ P
Sbjct: 1 MRVAVVGATGAVGREILKVLEARNFPLSELRLYASPRSAGVRLAFRGEEIPVEP 54
>pdb|1UZM|A Chain A, Maba From Mycobacterium Tuberculosis
pdb|1UZM|B Chain B, Maba From Mycobacterium Tuberculosis
pdb|1UZN|A Chain A, Maba From Mycobacterium Tuberculosis
pdb|1UZN|B Chain B, Maba From Mycobacterium Tuberculosis
Length = 247
Score = 29.6 bits (65), Expect = 2.8, Method: Compositional matrix adjust.
Identities = 16/40 (40%), Positives = 21/40 (52%)
Query: 52 TVSVTGATGFIGRRLVQRLQADNHQVRVLTRSRSKAELIF 91
+V VTG IG + QRL AD H+V V R + +F
Sbjct: 17 SVLVTGGNRGIGLAIAQRLAADGHKVAVTHRGSGAPKGLF 56
>pdb|2ZYG|A Chain A, Apo-Form Of Dimeric 6-Phosphogluconate Dehydrogenase
pdb|2ZYG|B Chain B, Apo-Form Of Dimeric 6-Phosphogluconate Dehydrogenase
Length = 480
Score = 28.9 bits (63), Expect = 5.0, Method: Compositional matrix adjust.
Identities = 17/50 (34%), Positives = 25/50 (50%), Gaps = 4/50 (8%)
Query: 49 SQMTVSVTGATGFIGRRLVQRLQADNHQVRVLTRSRSKAELIF---PGKK 95
S+ + V G +GR L +++ + V V RSR K E + PGKK
Sbjct: 14 SKQQIGVVG-MAVMGRNLALNIESRGYTVSVFNRSREKTEEVIAENPGKK 62
>pdb|3SXP|A Chain A, Crystal Structure Of Helicobacter Pylori
Adp-L-Glycero-D-Manno- Heptose-6-Epimerase (Rfad,
Hp0859)
pdb|3SXP|B Chain B, Crystal Structure Of Helicobacter Pylori
Adp-L-Glycero-D-Manno- Heptose-6-Epimerase (Rfad,
Hp0859)
pdb|3SXP|C Chain C, Crystal Structure Of Helicobacter Pylori
Adp-L-Glycero-D-Manno- Heptose-6-Epimerase (Rfad,
Hp0859)
pdb|3SXP|D Chain D, Crystal Structure Of Helicobacter Pylori
Adp-L-Glycero-D-Manno- Heptose-6-Epimerase (Rfad,
Hp0859)
pdb|3SXP|E Chain E, Crystal Structure Of Helicobacter Pylori
Adp-L-Glycero-D-Manno- Heptose-6-Epimerase (Rfad,
Hp0859)
Length = 362
Score = 28.5 bits (62), Expect = 5.2, Method: Compositional matrix adjust.
Identities = 10/44 (22%), Positives = 23/44 (52%)
Query: 52 TVSVTGATGFIGRRLVQRLQADNHQVRVLTRSRSKAELIFPGKK 95
T+ +TG GF+G L Q ++ + +V+ + ++ +F +
Sbjct: 12 TILITGGAGFVGSNLAFHFQENHPKAKVVVLDKFRSNTLFSNNR 55
>pdb|3ANU|A Chain A, Crystal Structure Of D-Serine Dehydratase From Chicken
Kidney
pdb|3ANV|A Chain A, Crystal Structure Of D-Serine Dehydratase From Chicken
Kidney (2,3-Dap Complex)
pdb|3AWN|A Chain A, Crystal Structure Of D-Serine Dehydratase From Chicken
Kidney (Edta Treated)
pdb|3AWO|A Chain A, Crystal Structure Of D-Serine Dehydratase In Complex With
D-Serine From Chicken Kidney (Edta-Treated)
Length = 376
Score = 28.5 bits (62), Expect = 5.5, Method: Compositional matrix adjust.
Identities = 18/59 (30%), Positives = 25/59 (42%), Gaps = 3/59 (5%)
Query: 245 PLGSGQQWFSWIHLDDIVNLIYEALSNPS---YRGVINGTAPNPVRLAEMCDHLGNVLG 300
PLG G++W W+ LD ++P+ I AP V L + H GN G
Sbjct: 124 PLGHGKRWLVWLKLDCGNGRAGVRPTDPAALELAQAIANDAPEEVTLVGVYAHCGNTYG 182
>pdb|2P5U|A Chain A, Crystal Structure Of Thermus Thermophilus Hb8
Udp-Glucose 4- Epimerase Complex With Nad
pdb|2P5U|B Chain B, Crystal Structure Of Thermus Thermophilus Hb8
Udp-Glucose 4- Epimerase Complex With Nad
pdb|2P5U|C Chain C, Crystal Structure Of Thermus Thermophilus Hb8
Udp-Glucose 4- Epimerase Complex With Nad
pdb|2P5U|D Chain D, Crystal Structure Of Thermus Thermophilus Hb8
Udp-Glucose 4- Epimerase Complex With Nad
pdb|2P5Y|A Chain A, Crystal Structure Of Thermus Thermophilus Hb8
Udp-glucose 4- Epimerase Complex With Nad
Length = 311
Score = 28.5 bits (62), Expect = 5.8, Method: Compositional matrix adjust.
Identities = 15/30 (50%), Positives = 18/30 (60%)
Query: 51 MTVSVTGATGFIGRRLVQRLQADNHQVRVL 80
M V VTG GFIG +V+ L A +V VL
Sbjct: 1 MRVLVTGGAGFIGSHIVEDLLARGLEVAVL 30
>pdb|3FWN|A Chain A, Dimeric 6-Phosphogluconate Dehydrogenase Complexed With
6- Phosphogluconate And
2'-Monophosphoadenosine-5'-Diphosphate
pdb|3FWN|B Chain B, Dimeric 6-Phosphogluconate Dehydrogenase Complexed With
6- Phosphogluconate And
2'-Monophosphoadenosine-5'-Diphosphate
Length = 480
Score = 28.5 bits (62), Expect = 6.2, Method: Compositional matrix adjust.
Identities = 16/50 (32%), Positives = 25/50 (50%), Gaps = 4/50 (8%)
Query: 49 SQMTVSVTGATGFIGRRLVQRLQADNHQVRVLTRSRSKAELIF---PGKK 95
S+ + V G +GR L +++ + V + RSR K E + PGKK
Sbjct: 14 SKQQIGVVG-MAVMGRNLALNIESRGYTVSIFNRSREKTEEVIAENPGKK 62
>pdb|2ZYA|A Chain A, Dimeric 6-Phosphogluconate Dehydrogenase Complexed With
6- Phosphogluconate
pdb|2ZYA|B Chain B, Dimeric 6-Phosphogluconate Dehydrogenase Complexed With
6- Phosphogluconate
pdb|2ZYD|A Chain A, Dimeric 6-Phosphogluconate Dehydrogenase Complexed With
Glucose
pdb|2ZYD|B Chain B, Dimeric 6-Phosphogluconate Dehydrogenase Complexed With
Glucose
Length = 480
Score = 28.5 bits (62), Expect = 6.2, Method: Compositional matrix adjust.
Identities = 16/50 (32%), Positives = 25/50 (50%), Gaps = 4/50 (8%)
Query: 49 SQMTVSVTGATGFIGRRLVQRLQADNHQVRVLTRSRSKAELIF---PGKK 95
S+ + V G +GR L +++ + V + RSR K E + PGKK
Sbjct: 14 SKQQIGVVG-MAVMGRNLALNIESRGYTVSIFNRSREKTEEVIAENPGKK 62
>pdb|4DQV|A Chain A, Crystal Structure Of Reductase (R) Domain Of Non-Ribosomal
Peptide Synthetase From Mycobacterium Tuberculosis
Length = 478
Score = 28.5 bits (62), Expect = 6.6, Method: Compositional matrix adjust.
Identities = 18/41 (43%), Positives = 24/41 (58%), Gaps = 5/41 (12%)
Query: 52 TVSVTGATGFIGRRLV----QRLQADNHQVRVLTRSRSKAE 88
TV +TGATGF+GR LV +RL D + L R+ S +
Sbjct: 75 TVLLTGATGFLGRYLVLELLRRLDVDGRLI-CLVRAESDED 114
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.322 0.136 0.420
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 10,563,447
Number of Sequences: 62578
Number of extensions: 436883
Number of successful extensions: 1210
Number of sequences better than 100.0: 37
Number of HSP's better than 100.0 without gapping: 23
Number of HSP's successfully gapped in prelim test: 14
Number of HSP's that attempted gapping in prelim test: 1178
Number of HSP's gapped (non-prelim): 40
length of query: 355
length of database: 14,973,337
effective HSP length: 100
effective length of query: 255
effective length of database: 8,715,537
effective search space: 2222461935
effective search space used: 2222461935
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 52 (24.6 bits)