Query 018495
Match_columns 355
No_of_seqs 236 out of 1026
Neff 4.6
Searched_HMMs 46136
Date Fri Mar 29 09:29:41 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/018495.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/018495hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 KOG0627 Heat shock transcripti 100.0 3.5E-42 7.6E-47 330.6 12.7 179 7-185 9-209 (304)
2 COG5169 HSF1 Heat shock transc 100.0 2.1E-35 4.6E-40 283.6 8.7 172 1-172 1-187 (282)
3 smart00415 HSF heat shock fact 100.0 2.4E-35 5.3E-40 245.3 6.4 94 9-102 1-105 (105)
4 PF00447 HSF_DNA-bind: HSF-typ 100.0 2.5E-35 5.3E-40 243.3 5.6 93 12-104 1-102 (103)
5 PF00178 Ets: Ets-domain; Int 96.1 0.0035 7.6E-08 51.3 2.2 71 14-84 5-81 (85)
6 smart00413 ETS erythroblast tr 94.5 0.054 1.2E-06 44.8 4.2 57 15-71 6-64 (87)
7 KOG3806 Predicted transcriptio 93.0 0.17 3.7E-06 46.8 5.1 66 6-71 64-131 (177)
8 PF04340 DUF484: Protein of un 91.9 0.59 1.3E-05 43.6 7.3 77 84-177 17-93 (225)
9 TIGR03752 conj_TIGR03752 integ 90.9 2.8 6.1E-05 44.2 11.7 42 126-167 68-109 (472)
10 PF03310 Cauli_DNA-bind: Cauli 84.3 2.7 5.9E-05 36.9 5.8 56 128-186 3-58 (121)
11 COG3074 Uncharacterized protei 84.2 2.9 6.2E-05 33.7 5.4 34 128-161 22-55 (79)
12 PF06005 DUF904: Protein of un 83.2 6.9 0.00015 31.2 7.2 41 128-168 22-69 (72)
13 PRK10963 hypothetical protein; 83.0 4.9 0.00011 37.9 7.4 77 84-177 14-90 (223)
14 PF05377 FlaC_arch: Flagella a 83.0 8.4 0.00018 29.5 7.3 45 127-171 3-47 (55)
15 TIGR02894 DNA_bind_RsfA transc 80.5 6.6 0.00014 36.0 7.0 47 125-171 105-151 (161)
16 PRK15422 septal ring assembly 72.6 19 0.0004 29.6 6.8 23 127-149 21-43 (79)
17 KOG4196 bZIP transcription fac 70.7 21 0.00046 31.9 7.4 46 125-170 75-120 (135)
18 TIGR02449 conserved hypothetic 69.4 30 0.00066 27.3 7.2 46 128-173 11-63 (65)
19 KOG3863 bZIP transcription fac 69.0 11 0.00024 41.0 6.3 94 86-186 479-577 (604)
20 PF05524 PEP-utilisers_N: PEP- 68.2 11 0.00024 31.7 5.0 60 127-186 31-91 (123)
21 COG3159 Uncharacterized protei 66.7 11 0.00023 36.3 5.0 79 81-176 12-90 (218)
22 PF02183 HALZ: Homeobox associ 66.7 12 0.00026 27.3 4.2 28 128-155 9-36 (45)
23 PF10224 DUF2205: Predicted co 66.6 32 0.0007 28.1 7.1 50 125-174 17-66 (80)
24 PF10779 XhlA: Haemolysin XhlA 61.9 41 0.00088 26.3 6.7 49 128-176 3-51 (71)
25 PF04977 DivIC: Septum formati 61.3 39 0.00084 25.7 6.5 44 133-183 19-62 (80)
26 PF12709 Kinetocho_Slk19: Cent 61.3 30 0.00065 28.9 6.1 41 128-168 46-86 (87)
27 PRK10803 tol-pal system protei 61.2 28 0.00061 33.7 6.9 41 128-168 58-98 (263)
28 PF00170 bZIP_1: bZIP transcri 60.4 35 0.00077 25.7 6.0 32 127-158 29-60 (64)
29 smart00338 BRLZ basic region l 60.2 30 0.00066 26.1 5.6 31 127-157 29-59 (65)
30 PF04977 DivIC: Septum formati 59.7 31 0.00066 26.3 5.7 31 127-157 20-50 (80)
31 PF11853 DUF3373: Protein of u 58.5 8.5 0.00018 40.9 3.1 32 128-159 28-59 (489)
32 TIGR00219 mreC rod shape-deter 56.1 24 0.00052 34.6 5.5 28 130-157 65-92 (283)
33 PF13747 DUF4164: Domain of un 54.9 57 0.0012 26.9 6.8 47 126-172 34-80 (89)
34 PF10211 Ax_dynein_light: Axon 53.4 44 0.00094 31.0 6.5 47 126-172 122-168 (189)
35 KOG4196 bZIP transcription fac 53.4 31 0.00067 30.9 5.2 29 128-156 85-113 (135)
36 PF02183 HALZ: Homeobox associ 53.3 41 0.0009 24.5 5.0 28 127-154 15-42 (45)
37 PF03904 DUF334: Domain of unk 53.1 32 0.00069 33.4 5.6 41 131-171 43-83 (230)
38 PF15456 Uds1: Up-regulated Du 51.8 61 0.0013 28.4 6.8 45 131-176 22-66 (124)
39 PF12325 TMF_TATA_bd: TATA ele 51.6 57 0.0012 28.4 6.6 32 126-157 32-63 (120)
40 PF11853 DUF3373: Protein of u 51.6 13 0.00029 39.5 3.1 36 128-164 22-57 (489)
41 PF10458 Val_tRNA-synt_C: Valy 51.2 94 0.002 23.8 7.1 26 129-154 2-27 (66)
42 PRK13729 conjugal transfer pil 51.1 47 0.001 35.3 7.1 39 132-170 77-115 (475)
43 PF07795 DUF1635: Protein of u 50.6 65 0.0014 30.9 7.3 43 133-175 3-49 (214)
44 TIGR02338 gimC_beta prefoldin, 50.6 52 0.0011 27.6 6.0 39 127-165 70-108 (110)
45 PF04880 NUDE_C: NUDE protein, 50.2 5.6 0.00012 36.6 0.1 19 136-154 29-47 (166)
46 PF07716 bZIP_2: Basic region 49.8 40 0.00086 24.8 4.6 26 127-152 28-53 (54)
47 PF11932 DUF3450: Protein of u 48.9 63 0.0014 30.7 7.1 9 197-205 148-156 (251)
48 PRK00888 ftsB cell division pr 48.9 25 0.00054 29.7 3.9 26 129-154 32-57 (105)
49 PF10473 CENP-F_leu_zip: Leuci 48.5 75 0.0016 28.5 7.0 29 129-157 57-85 (140)
50 TIGR00219 mreC rod shape-deter 46.8 72 0.0016 31.3 7.2 44 125-168 67-110 (283)
51 PF07407 Seadorna_VP6: Seadorn 46.3 54 0.0012 33.7 6.3 29 125-153 33-61 (420)
52 PF12718 Tropomyosin_1: Tropom 45.9 93 0.002 27.6 7.2 46 127-172 17-62 (143)
53 PF07334 IFP_35_N: Interferon- 45.3 44 0.00094 27.3 4.5 24 128-151 4-27 (76)
54 PRK13922 rod shape-determining 45.3 43 0.00094 32.0 5.4 27 131-157 69-95 (276)
55 PF10224 DUF2205: Predicted co 44.8 86 0.0019 25.7 6.2 44 140-183 18-61 (80)
56 PF11414 Suppressor_APC: Adeno 44.7 43 0.00093 27.6 4.5 36 128-163 4-46 (84)
57 PF12329 TMF_DNA_bd: TATA elem 44.1 94 0.002 24.7 6.3 38 131-168 33-70 (74)
58 PRK09039 hypothetical protein; 44.1 72 0.0016 32.2 6.9 46 127-172 140-185 (343)
59 PF05529 Bap31: B-cell recepto 43.9 44 0.00096 30.4 5.0 34 126-159 156-189 (192)
60 PRK14127 cell division protein 43.8 64 0.0014 27.8 5.6 32 128-159 34-65 (109)
61 PRK10884 SH3 domain-containing 43.8 65 0.0014 30.5 6.2 29 71-99 65-95 (206)
62 PRK10803 tol-pal system protei 43.0 64 0.0014 31.3 6.2 38 135-172 58-95 (263)
63 PF04728 LPP: Lipoprotein leuc 42.7 1.4E+02 0.0031 23.0 6.7 24 129-152 8-31 (56)
64 PRK09343 prefoldin subunit bet 42.4 96 0.0021 26.7 6.5 39 128-166 75-113 (121)
65 PRK00888 ftsB cell division pr 41.9 65 0.0014 27.2 5.3 31 132-162 28-58 (105)
66 PF11382 DUF3186: Protein of u 41.9 71 0.0015 31.7 6.4 42 127-168 35-76 (308)
67 PF04102 SlyX: SlyX; InterPro 41.5 1.2E+02 0.0026 23.6 6.4 43 128-170 8-50 (69)
68 PF13815 Dzip-like_N: Iguana/D 41.4 93 0.002 26.5 6.3 31 129-159 78-108 (118)
69 PF08826 DMPK_coil: DMPK coile 40.7 1.3E+02 0.0029 23.3 6.4 38 127-164 14-51 (61)
70 PF07989 Microtub_assoc: Micro 40.5 1E+02 0.0022 24.8 5.9 36 125-160 37-72 (75)
71 PF15361 RIC3: Resistance to i 40.5 32 0.00068 31.1 3.4 25 141-165 127-151 (152)
72 PF05565 Sipho_Gp157: Siphovir 40.3 1.1E+02 0.0024 27.5 6.9 46 128-173 44-89 (162)
73 PF07676 PD40: WD40-like Beta 40.0 11 0.00025 25.1 0.4 23 20-42 4-26 (39)
74 PF10805 DUF2730: Protein of u 39.6 83 0.0018 26.5 5.6 37 128-164 53-91 (106)
75 PF08537 NBP1: Fungal Nap bind 39.4 1.9E+02 0.0041 29.5 8.9 47 128-178 179-225 (323)
76 PRK11637 AmiB activator; Provi 39.4 98 0.0021 31.7 7.2 43 128-170 93-135 (428)
77 PF13942 Lipoprotein_20: YfhG 38.7 79 0.0017 29.6 5.7 26 130-155 129-154 (179)
78 TIGR02894 DNA_bind_RsfA transc 38.5 79 0.0017 29.2 5.6 43 133-175 99-141 (161)
79 smart00338 BRLZ basic region l 38.0 1.5E+02 0.0032 22.4 6.3 37 130-166 25-61 (65)
80 PF05377 FlaC_arch: Flagella a 37.9 96 0.0021 23.8 5.1 32 126-157 9-40 (55)
81 PF04201 TPD52: Tumour protein 37.9 1E+02 0.0023 28.4 6.3 32 130-161 28-59 (162)
82 PF02344 Myc-LZ: Myc leucine z 37.8 55 0.0012 22.6 3.4 25 127-151 4-28 (32)
83 PF08657 DASH_Spc34: DASH comp 37.7 81 0.0018 30.9 6.0 42 128-169 177-218 (259)
84 PRK15422 septal ring assembly 37.6 1.1E+02 0.0024 25.2 5.7 40 127-166 35-74 (79)
85 PF03273 Baculo_gp64: Baculovi 37.1 1.3E+02 0.0027 32.3 7.5 199 27-252 178-391 (498)
86 PF00631 G-gamma: GGL domain; 36.9 45 0.00097 25.7 3.3 40 132-175 3-42 (68)
87 PF08172 CASP_C: CASP C termin 36.6 88 0.0019 30.4 6.0 47 127-173 82-128 (248)
88 COG1422 Predicted membrane pro 36.2 1E+02 0.0022 29.4 6.2 43 131-173 72-119 (201)
89 COG1382 GimC Prefoldin, chaper 36.2 1.3E+02 0.0027 26.5 6.3 43 131-173 70-112 (119)
90 PF13863 DUF4200: Domain of un 35.8 1.5E+02 0.0033 24.7 6.7 42 128-173 78-119 (126)
91 PF00170 bZIP_1: bZIP transcri 35.7 1.6E+02 0.0035 22.1 6.2 35 130-164 25-59 (64)
92 PF02996 Prefoldin: Prefoldin 35.3 1.4E+02 0.003 24.6 6.3 42 130-171 76-117 (120)
93 PF04111 APG6: Autophagy prote 35.0 1.5E+02 0.0033 29.6 7.5 25 128-152 47-71 (314)
94 PRK03947 prefoldin subunit alp 34.8 1.4E+02 0.0031 25.7 6.5 37 128-164 98-134 (140)
95 PF11932 DUF3450: Protein of u 34.7 1.6E+02 0.0034 28.0 7.3 8 279-286 208-215 (251)
96 PRK10722 hypothetical protein; 34.7 82 0.0018 30.9 5.4 27 144-170 175-201 (247)
97 PF10473 CENP-F_leu_zip: Leuci 34.3 2E+02 0.0044 25.8 7.5 49 125-173 67-115 (140)
98 PRK13923 putative spore coat p 34.0 1.6E+02 0.0034 27.4 6.9 43 129-171 109-151 (170)
99 KOG3915 Transcription regulato 33.8 1.3E+02 0.0027 32.5 6.9 15 136-150 526-540 (641)
100 PF01920 Prefoldin_2: Prefoldi 33.6 1.6E+02 0.0034 23.5 6.2 42 131-172 62-103 (106)
101 PF06005 DUF904: Protein of un 33.6 1.6E+02 0.0036 23.4 6.1 25 129-153 9-33 (72)
102 PF02996 Prefoldin: Prefoldin 33.6 1.2E+02 0.0026 25.0 5.6 39 127-165 80-118 (120)
103 PRK10884 SH3 domain-containing 33.5 99 0.0022 29.2 5.7 25 132-156 133-157 (206)
104 PRK13182 racA polar chromosome 33.5 1.2E+02 0.0027 27.9 6.2 22 86-107 36-57 (175)
105 KOG2185 Predicted RNA-processi 33.4 1.3E+02 0.0029 31.8 6.9 27 125-151 414-440 (486)
106 PF07200 Mod_r: Modifier of ru 33.3 1.3E+02 0.0028 26.1 6.0 35 130-164 54-88 (150)
107 PHA02047 phage lambda Rz1-like 33.2 1.9E+02 0.0042 24.7 6.7 44 130-173 33-76 (101)
108 PF10458 Val_tRNA-synt_C: Valy 33.2 1.1E+02 0.0023 23.5 4.9 33 143-179 2-34 (66)
109 COG1382 GimC Prefoldin, chaper 33.1 1.6E+02 0.0034 26.0 6.4 40 127-166 73-112 (119)
110 PF14817 HAUS5: HAUS augmin-li 32.9 1.4E+02 0.003 33.0 7.4 46 125-170 80-125 (632)
111 PRK13729 conjugal transfer pil 32.8 1.3E+02 0.0028 32.2 6.8 42 127-168 79-120 (475)
112 PF04728 LPP: Lipoprotein leuc 32.7 1.6E+02 0.0035 22.7 5.6 40 126-165 12-51 (56)
113 PF04325 DUF465: Protein of un 31.9 80 0.0017 22.9 3.8 22 131-152 27-48 (49)
114 cd00890 Prefoldin Prefoldin is 31.8 1.5E+02 0.0033 24.5 6.1 36 128-163 91-126 (129)
115 cd00632 Prefoldin_beta Prefold 31.6 1.1E+02 0.0024 25.3 5.0 11 143-153 82-92 (105)
116 PF10883 DUF2681: Protein of u 31.4 1.6E+02 0.0036 24.5 5.9 26 131-156 30-55 (87)
117 PRK05892 nucleoside diphosphat 31.3 1.7E+02 0.0037 26.4 6.6 26 124-149 11-36 (158)
118 TIGR02449 conserved hypothetic 31.1 2.7E+02 0.0058 22.0 7.2 39 128-166 4-42 (65)
119 PF11559 ADIP: Afadin- and alp 30.9 2.3E+02 0.0049 24.7 7.2 10 67-76 10-19 (151)
120 PF10168 Nup88: Nuclear pore c 30.8 1.4E+02 0.0031 33.3 7.1 22 151-172 599-620 (717)
121 PF10018 Med4: Vitamin-D-recep 30.7 2.1E+02 0.0045 26.2 7.2 45 127-172 12-56 (188)
122 PF14584 DUF4446: Protein of u 30.7 1E+02 0.0022 27.8 5.1 40 126-165 41-80 (151)
123 PF06156 DUF972: Protein of un 30.6 1.7E+02 0.0037 25.0 6.1 27 128-154 5-31 (107)
124 PF08776 VASP_tetra: VASP tetr 30.1 2.2E+02 0.0047 20.7 6.1 24 131-154 3-27 (40)
125 PRK13922 rod shape-determining 30.1 1.9E+02 0.0041 27.7 7.1 28 125-152 70-97 (276)
126 KOG4591 Uncharacterized conser 30.1 1E+02 0.0022 30.0 5.1 27 127-153 6-32 (280)
127 COG2433 Uncharacterized conser 30.0 1.1E+02 0.0024 33.7 6.0 37 128-164 426-462 (652)
128 PF14193 DUF4315: Domain of un 29.8 3.1E+02 0.0067 22.5 7.2 54 128-183 5-58 (83)
129 KOG4571 Activating transcripti 29.7 1.3E+02 0.0028 30.2 6.0 7 81-87 144-150 (294)
130 PF07106 TBPIP: Tat binding pr 29.6 2.4E+02 0.0053 25.0 7.3 46 128-173 83-137 (169)
131 PRK06342 transcription elongat 29.3 1.2E+02 0.0026 27.5 5.3 13 125-137 35-47 (160)
132 PF04420 CHD5: CHD5-like prote 29.0 1.3E+02 0.0027 27.2 5.3 41 132-172 67-107 (161)
133 PF07334 IFP_35_N: Interferon- 29.0 1.2E+02 0.0025 24.8 4.6 24 133-156 2-25 (76)
134 PRK11377 dihydroxyacetone kina 28.9 1.6E+02 0.0035 31.2 6.9 57 128-184 278-335 (473)
135 PRK06800 fliH flagellar assemb 28.8 1.5E+02 0.0033 28.3 5.9 21 126-146 47-67 (228)
136 PF11221 Med21: Subunit 21 of 28.8 2.1E+02 0.0046 25.2 6.7 44 125-168 98-141 (144)
137 KOG4005 Transcription factor X 28.7 1.7E+02 0.0037 29.0 6.4 43 127-169 93-135 (292)
138 PF04156 IncA: IncA protein; 28.7 2.1E+02 0.0045 25.6 6.8 6 153-158 131-136 (191)
139 PRK11637 AmiB activator; Provi 28.7 2E+02 0.0042 29.5 7.3 26 127-152 99-124 (428)
140 PF05064 Nsp1_C: Nsp1-like C-t 28.3 63 0.0014 27.6 3.1 28 128-155 61-88 (116)
141 PHA01750 hypothetical protein 28.2 1.4E+02 0.0031 24.0 4.8 25 137-161 41-65 (75)
142 PF02388 FemAB: FemAB family; 27.6 2.2E+02 0.0048 29.1 7.5 14 62-75 124-137 (406)
143 COG5613 Uncharacterized conser 27.4 1.6E+02 0.0035 30.6 6.3 50 124-173 330-379 (400)
144 KOG4497 Uncharacterized conser 27.3 63 0.0014 33.4 3.4 35 12-46 162-200 (447)
145 COG3074 Uncharacterized protei 27.1 2.3E+02 0.0051 23.0 5.9 35 128-162 36-70 (79)
146 PF07407 Seadorna_VP6: Seadorn 27.1 2.3E+02 0.0051 29.3 7.3 40 123-162 38-79 (420)
147 cd00632 Prefoldin_beta Prefold 26.9 2.3E+02 0.005 23.4 6.2 29 128-156 74-102 (105)
148 COG1422 Predicted membrane pro 26.8 2E+02 0.0043 27.5 6.4 40 128-167 76-120 (201)
149 cd00584 Prefoldin_alpha Prefol 26.7 3E+02 0.0065 23.2 7.0 32 128-159 91-122 (129)
150 PF04880 NUDE_C: NUDE protein, 26.7 32 0.0007 31.7 1.1 19 129-147 5-23 (166)
151 PF09726 Macoilin: Transmembra 26.6 1.3E+02 0.0028 33.6 5.9 18 127-144 421-438 (697)
152 PF10168 Nup88: Nuclear pore c 26.4 2.5E+02 0.0054 31.4 8.0 43 128-170 583-625 (717)
153 PF12269 zf-CpG_bind_C: CpG bi 26.4 1.6E+02 0.0036 28.6 5.9 35 131-172 29-63 (236)
154 PRK13169 DNA replication intia 26.3 1.5E+02 0.0033 25.6 5.1 27 128-154 5-31 (110)
155 COG1730 GIM5 Predicted prefold 26.3 2.6E+02 0.0057 25.2 6.8 43 128-170 91-133 (145)
156 cd00584 Prefoldin_alpha Prefol 26.2 1.9E+02 0.0042 24.3 5.8 45 128-172 84-128 (129)
157 TIGR01242 26Sp45 26S proteasom 26.1 1.6E+02 0.0035 29.2 6.1 41 131-178 6-46 (364)
158 PF12004 DUF3498: Domain of un 26.0 22 0.00049 37.9 0.0 46 128-173 373-419 (495)
159 PRK12765 flagellar capping pro 26.0 2.5E+02 0.0054 30.6 7.8 56 125-183 533-588 (595)
160 PF04111 APG6: Autophagy prote 25.8 2.5E+02 0.0053 28.1 7.2 34 126-159 59-92 (314)
161 PF11471 Sugarporin_N: Maltopo 25.7 1.5E+02 0.0032 22.9 4.5 27 128-154 29-55 (60)
162 KOG1760 Molecular chaperone Pr 25.5 3.4E+02 0.0074 24.3 7.2 48 128-175 78-125 (131)
163 COG1730 GIM5 Predicted prefold 25.5 2.5E+02 0.0054 25.4 6.5 43 126-168 96-138 (145)
164 PF13874 Nup54: Nucleoporin co 25.5 3.3E+02 0.0071 23.8 7.2 39 128-166 55-93 (141)
165 PF15058 Speriolin_N: Sperioli 25.4 1.2E+02 0.0025 29.0 4.5 30 125-154 6-35 (200)
166 KOG4001 Axonemal dynein light 25.3 2.4E+02 0.0053 27.4 6.7 39 125-163 186-224 (259)
167 PF13600 DUF4140: N-terminal d 25.3 1.9E+02 0.004 23.6 5.3 30 131-160 70-99 (104)
168 KOG4010 Coiled-coil protein TP 25.1 2.2E+02 0.0047 27.2 6.2 31 130-160 43-73 (208)
169 PRK10698 phage shock protein P 24.8 3E+02 0.0065 26.1 7.3 43 128-170 103-145 (222)
170 KOG2629 Peroxisomal membrane a 24.8 3.9E+02 0.0085 27.0 8.3 45 125-169 123-167 (300)
171 PRK02793 phi X174 lysis protei 24.7 3.5E+02 0.0077 21.3 7.0 30 129-158 6-35 (72)
172 PF09006 Surfac_D-trimer: Lung 24.6 1.9E+02 0.0042 21.5 4.6 20 134-153 2-21 (46)
173 TIGR01417 PTS_I_fam phosphoeno 24.6 2E+02 0.0043 31.1 6.7 57 128-184 34-91 (565)
174 PF07889 DUF1664: Protein of u 24.4 2.3E+02 0.0049 25.1 5.9 37 129-165 52-88 (126)
175 COG1579 Zn-ribbon protein, pos 24.3 2.3E+02 0.005 27.6 6.5 38 125-162 90-127 (239)
176 PF05103 DivIVA: DivIVA protei 24.1 38 0.00082 28.4 1.0 33 128-160 29-61 (131)
177 PF04420 CHD5: CHD5-like prote 24.1 1.8E+02 0.0039 26.1 5.4 15 127-141 43-57 (161)
178 cd00890 Prefoldin Prefoldin is 24.1 3.6E+02 0.0079 22.2 7.0 44 128-171 84-127 (129)
179 PF12808 Mto2_bdg: Micro-tubul 24.0 1.4E+02 0.003 22.7 3.9 28 125-152 23-50 (52)
180 PF01025 GrpE: GrpE; InterPro 24.0 4E+02 0.0086 23.3 7.5 34 124-157 18-51 (165)
181 PF04568 IATP: Mitochondrial A 23.9 2.2E+02 0.0047 24.3 5.5 18 142-159 80-97 (100)
182 PF12017 Tnp_P_element: Transp 23.9 2.2E+02 0.0048 27.6 6.3 43 128-174 15-57 (236)
183 PF10779 XhlA: Haemolysin XhlA 23.5 3.5E+02 0.0077 20.9 7.2 43 126-168 15-57 (71)
184 PF07195 FliD_C: Flagellar hoo 23.5 2.8E+02 0.006 26.1 6.8 34 125-158 194-227 (239)
185 PF14282 FlxA: FlxA-like prote 23.4 3.1E+02 0.0067 23.0 6.4 24 129-152 17-40 (106)
186 TIGR03752 conj_TIGR03752 integ 23.4 2.1E+02 0.0045 30.7 6.4 49 126-174 61-109 (472)
187 PRK04325 hypothetical protein; 23.4 3.8E+02 0.0083 21.3 7.2 30 129-158 7-36 (74)
188 TIGR02977 phageshock_pspA phag 23.2 3.4E+02 0.0074 25.4 7.3 41 128-168 103-143 (219)
189 PRK00295 hypothetical protein; 23.2 3.7E+02 0.008 21.0 7.2 22 140-161 21-42 (68)
190 PRK08032 fliD flagellar cappin 23.2 2.4E+02 0.0051 29.6 6.8 29 128-156 410-438 (462)
191 PF09726 Macoilin: Transmembra 23.0 76 0.0016 35.3 3.3 29 126-154 547-575 (697)
192 KOG0977 Nuclear envelope prote 23.0 2.4E+02 0.0052 30.8 6.9 29 126-154 164-192 (546)
193 PHA02047 phage lambda Rz1-like 22.9 3.4E+02 0.0074 23.3 6.4 33 126-158 36-68 (101)
194 KOG2264 Exostosin EXT1L [Signa 22.8 1.7E+02 0.0036 32.5 5.6 37 273-311 285-325 (907)
195 PF01920 Prefoldin_2: Prefoldi 22.6 3.4E+02 0.0074 21.6 6.4 31 128-158 2-32 (106)
196 TIGR00293 prefoldin, archaeal 22.6 2.4E+02 0.0052 23.7 5.6 30 128-157 90-119 (126)
197 PF09766 FimP: Fms-interacting 22.4 2.2E+02 0.0047 28.9 6.2 39 125-163 102-140 (355)
198 PRK04406 hypothetical protein; 22.3 4.1E+02 0.0089 21.2 7.0 34 128-161 8-41 (75)
199 PRK00736 hypothetical protein; 22.3 3.8E+02 0.0083 20.9 7.2 36 129-164 10-45 (68)
200 PF04822 Takusan: Takusan; In 22.2 4.5E+02 0.0098 21.7 8.3 30 126-155 13-43 (84)
201 PF11559 ADIP: Afadin- and alp 22.0 3.9E+02 0.0084 23.3 7.0 25 128-152 56-80 (151)
202 smart00150 SPEC Spectrin repea 22.0 3.1E+02 0.0068 20.5 5.8 37 130-166 30-66 (101)
203 PRK14127 cell division protein 22.0 3.4E+02 0.0073 23.5 6.4 41 128-168 27-67 (109)
204 PF08227 DASH_Hsk3: DASH compl 21.9 3.3E+02 0.0072 20.0 6.1 38 133-171 4-41 (45)
205 COG4467 Regulator of replicati 21.8 2.4E+02 0.0053 24.6 5.4 32 125-156 2-33 (114)
206 PF12958 DUF3847: Protein of u 21.8 3.5E+02 0.0076 22.5 6.2 31 127-157 4-34 (86)
207 PF07028 DUF1319: Protein of u 21.6 2.8E+02 0.0062 24.7 6.0 49 131-179 60-109 (126)
208 PRK00846 hypothetical protein; 21.5 3E+02 0.0064 22.4 5.6 35 130-164 26-60 (77)
209 KOG2196 Nuclear porin [Nuclear 21.4 2.3E+02 0.0049 28.0 5.8 32 128-159 117-148 (254)
210 PHA01750 hypothetical protein 21.4 1.6E+02 0.0035 23.7 4.0 19 143-161 40-58 (75)
211 PF08781 DP: Transcription fac 21.4 3.7E+02 0.0079 24.3 6.7 25 132-156 2-26 (142)
212 PF05384 DegS: Sensor protein 21.3 4.1E+02 0.0088 24.3 7.1 45 128-172 24-68 (159)
213 PF13600 DUF4140: N-terminal d 21.3 2E+02 0.0043 23.4 4.8 33 125-157 71-103 (104)
214 PF02050 FliJ: Flagellar FliJ 21.3 3.8E+02 0.0083 21.0 6.4 37 128-164 56-92 (123)
215 PF08614 ATG16: Autophagy prot 21.2 6.2E+02 0.013 23.1 8.5 55 127-187 133-187 (194)
216 PF04380 BMFP: Membrane fusoge 21.1 1.9E+02 0.0042 23.1 4.5 28 137-164 49-76 (79)
217 PF07106 TBPIP: Tat binding pr 21.1 3.5E+02 0.0076 24.0 6.7 36 124-159 72-107 (169)
218 PF14131 DUF4298: Domain of un 21.0 3.6E+02 0.0078 22.0 6.2 38 131-168 3-40 (90)
219 smart00502 BBC B-Box C-termina 20.7 4.1E+02 0.0089 21.2 6.5 17 158-174 88-104 (127)
220 PRK06798 fliD flagellar cappin 20.6 3.3E+02 0.0072 28.5 7.3 30 126-155 381-410 (440)
221 PRK03947 prefoldin subunit alp 20.5 4.2E+02 0.009 22.7 6.8 45 128-172 91-135 (140)
222 PRK11177 phosphoenolpyruvate-p 20.5 2.5E+02 0.0054 30.5 6.5 56 128-183 35-91 (575)
223 PF08172 CASP_C: CASP C termin 20.3 3.5E+02 0.0076 26.3 6.9 37 126-162 95-131 (248)
224 PF06295 DUF1043: Protein of u 20.3 3E+02 0.0064 23.9 5.8 22 135-156 29-50 (128)
225 TIGR02132 phaR_Bmeg polyhydrox 20.3 4.2E+02 0.0092 25.1 7.1 33 142-174 111-143 (189)
226 COG5481 Uncharacterized conser 20.2 1.9E+02 0.004 22.9 4.0 28 125-152 5-32 (67)
227 KOG3091 Nuclear pore complex, 20.2 2.6E+02 0.0057 30.2 6.4 42 128-169 359-400 (508)
228 PRK02119 hypothetical protein; 20.2 4.5E+02 0.0097 20.9 7.0 31 128-158 6-36 (73)
229 PF10481 CENP-F_N: Cenp-F N-te 20.2 2.7E+02 0.0059 28.1 6.1 14 128-141 22-35 (307)
230 PF10234 Cluap1: Clusterin-ass 20.2 2.8E+02 0.006 27.5 6.2 36 128-163 180-215 (267)
231 PF04012 PspA_IM30: PspA/IM30 20.1 3E+02 0.0066 25.3 6.3 19 131-149 98-116 (221)
No 1
>KOG0627 consensus Heat shock transcription factor [Transcription]
Probab=100.00 E-value=3.5e-42 Score=330.57 Aligned_cols=179 Identities=42% Similarity=0.692 Sum_probs=150.0
Q ss_pred CCCCChHHHHHHHhhcCCCCCCcEEEcCCCCeEEEeCCchhhhhhcccccCCCChhHHHhhhcccCccccC--CCCceEe
Q 018495 7 NNVIAPFVMKTYQMVNDPTTDSLISWGKANNSFIVVDPLDFSQRILPAYFKHNNFSSFVRQLNTYGFRKVD--PDKWEFA 84 (355)
Q Consensus 7 ~~~~p~Fl~KLy~mLed~~~~~iIsWs~~G~sFvV~d~~~F~~~VLP~yFKh~nfsSFvRQLN~YGFrKv~--pd~~eF~ 84 (355)
...+++|+.|||+||+|+++++||+|+++|++|||||+.+|++.+||+||||+||+|||||||+||||||+ +++|||+
T Consensus 9 ~~~~~~Fl~K~y~~v~Dps~~~iisWs~~g~sFvv~d~~~F~~~~Lp~~FKh~NfsSFvRQLN~YgFrKv~~~~~~wEF~ 88 (304)
T KOG0627|consen 9 ASGPPPFLEKLYEMVEDPSTDEIISWSPSGNSFVIWNPEEFAKVLLPLYFKHNNFSSFVRQLNMYGFRKVDFKSDRWEFS 88 (304)
T ss_pred cCCCCcHHHHHHHHhcCCCCCCceEECCCCCccccCCHHHHHHHHhHHhccccCccceeeeecccceeecCCCCCceeec
Confidence 45899999999999999999999999999999999999999999999999999999999999999999999 9999999
Q ss_pred cccccccccccccceeeccCCCCCccc--cccccCC----CCCCCCChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH--
Q 018495 85 NEWFLRGQKHLLKNIVRRKHSSNRSAH--HMMMRGG----AGDQDLDDEEIVMEIARLRQEQKSLDEELQGMNKRLEA-- 156 (355)
Q Consensus 85 He~F~RG~~~LL~~IkRkk~~s~~~s~--~~q~~~~----~~~~~~~~~~L~~EIerLKreq~~L~qEL~~Lrqr~q~-- 156 (355)
|++|+||+++||++|+||+........ ....... .......+..+..++.+|+++++.|+.|+.+|+++.+.
T Consensus 89 n~~F~rg~~~LL~~I~rrk~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~l~~~~~~lr~~~~~~~ 168 (304)
T KOG0627|consen 89 NPCFVRGQKLLLKNIKRRKSASRIFQTKDSPKSFERQLNLYGFVKIRQLNLKESAKSLSKENEVLQRELVELRQQQDALR 168 (304)
T ss_pred ChhHhcChHHHHHHHhhhccccCCcccccCcchhhhhhhHHHHhhcccccchhHHHHHHHHHHHHHHHHHHHHhhHHHHH
Confidence 999999999999999999998654321 1110000 00011245567788888888888888888888754433
Q ss_pred ------------HHHhHHHHHHHHHHhhcCCCcHHHHHhhh
Q 018495 157 ------------TERRPEQMMAFLYKVVEDPDLLPRIIMEK 185 (355)
Q Consensus 157 ------------~EqrqqqMm~FLakvvqnP~fl~~li~q~ 185 (355)
.++++++|+.|+++++..|.++.++....
T Consensus 169 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~ 209 (304)
T KOG0627|consen 169 ATIQTSKRVVKSKETRNSLILSFLARDVQSPGFLNQAPQRQ 209 (304)
T ss_pred HHHHhhccccCchhhHHHHHhhHHHhhccCccchhcccchh
Confidence 35678899999999999999998887654
No 2
>COG5169 HSF1 Heat shock transcription factor [Transcription]
Probab=100.00 E-value=2.1e-35 Score=283.64 Aligned_cols=172 Identities=35% Similarity=0.546 Sum_probs=139.5
Q ss_pred CCCCCCCCCCChHHHHHHHhhcCCCCCCcEEEcCCCCeEEEeCCchhhhhhcccccCCCChhHHHhhhcccCccccC-C-
Q 018495 1 MEPNNTNNVIAPFVMKTYQMVNDPTTDSLISWGKANNSFIVVDPLDFSQRILPAYFKHNNFSSFVRQLNTYGFRKVD-P- 78 (355)
Q Consensus 1 m~~~~~~~~~p~Fl~KLy~mLed~~~~~iIsWs~~G~sFvV~d~~~F~~~VLP~yFKh~nfsSFvRQLN~YGFrKv~-p- 78 (355)
|..+.....++.|+.|||.||+|+++.++|+|+++|++|||+|++.|.+.|||+||||+||+|||||||+|||+||. .
T Consensus 1 ~~~s~~~~~~~~FV~KLy~iLe~~e~~k~I~Ws~~G~sfvI~~~~~F~~~iLpr~FKh~NfaSFVRQLN~YgFhKv~h~~ 80 (282)
T COG5169 1 MSMSSRWSQPKEFVHKLYQILEEPEYYKLIQWSPDGRSFVILDPEEFTKVILPRYFKHGNFASFVRQLNKYGFHKVSHKS 80 (282)
T ss_pred CCCCcCCCchhHHHHHHHHHhcCcccCCceEECCCCCEEEEeCcchhhhhhhhhhhcccCHHHHHHHHHhcCcEeccCCc
Confidence 44555667888999999999999999999999999999999999999999999999999999999999999999997 1
Q ss_pred --------CCceEecccccccccccccceeeccCCCCCccccc---c-ccC-CCCCCCCChHHHHHHHHHHHHHHHHHHH
Q 018495 79 --------DKWEFANEWFLRGQKHLLKNIVRRKHSSNRSAHHM---M-MRG-GAGDQDLDDEEIVMEIARLRQEQKSLDE 145 (355)
Q Consensus 79 --------d~~eF~He~F~RG~~~LL~~IkRkk~~s~~~s~~~---q-~~~-~~~~~~~~~~~L~~EIerLKreq~~L~q 145 (355)
+.|||.|++|++|..++|++|+|+|..+....... . +.. .....-..+..+..++.+|....+.++.
T Consensus 81 ~~~~~~n~~~wef~~~nF~~g~~~~L~~i~r~ka~~~~~~~~~~s~~~~~~~~~~~~i~~~~~~~~~~S~l~~~~~~~~~ 160 (282)
T COG5169 81 GQRSYYNENVWEFGNKNFQLGMIELLKKIKRKKAPSNRVDSNNESKDAMMNIEVENIILPQSELYNSLSSLSNVNQTLLL 160 (282)
T ss_pred ccccccchhheeecCchhccCcHHHHHHhhhhhcCcccccccCCCCccccchhhhhhhchhcccCcchhHHhhhhHHHhh
Confidence 24999999999999999999999887654322110 0 000 0011112455667788899999999999
Q ss_pred HHHHHHHHHHHHHHhHHHHHHHHHHhh
Q 018495 146 ELQGMNKRLEATERRPEQMMAFLYKVV 172 (355)
Q Consensus 146 EL~~Lrqr~q~~EqrqqqMm~FLakvv 172 (355)
.+.+++..+..-..++..+.++|..+-
T Consensus 161 ~~~~lk~~~~~~~~~~~~~~~~l~~~s 187 (282)
T COG5169 161 YLNELKEYNYRNLRTIDDINAMLADLS 187 (282)
T ss_pred hhccccchhhhcccccchhhhcccCcc
Confidence 999988887777777777888877765
No 3
>smart00415 HSF heat shock factor.
Probab=100.00 E-value=2.4e-35 Score=245.26 Aligned_cols=94 Identities=61% Similarity=1.111 Sum_probs=91.0
Q ss_pred CCChHHHHHHHhhcCCCCCCcEEEcCCCCeEEEeCCchhhhhhcccccCCCChhHHHhhhcccCccccCC----------
Q 018495 9 VIAPFVMKTYQMVNDPTTDSLISWGKANNSFIVVDPLDFSQRILPAYFKHNNFSSFVRQLNTYGFRKVDP---------- 78 (355)
Q Consensus 9 ~~p~Fl~KLy~mLed~~~~~iIsWs~~G~sFvV~d~~~F~~~VLP~yFKh~nfsSFvRQLN~YGFrKv~p---------- 78 (355)
.+|+|+.|||+||+|+++++||+|+++|++|+|+|+++|.+.|||+||+|++|+||+||||+|||+|+..
T Consensus 1 ~~~~F~~kL~~~l~~~~~~~iI~W~~~G~~f~I~d~~~f~~~vLp~~Fk~~~~~SF~RqLn~yGF~k~~~~~~~~~~~~~ 80 (105)
T smart00415 1 QPPPFLTKLYLLVEDPSTDKIISWSPSGKSFVIWDPEEFAKNLLPRYFKHNNFSSFVRQLNMYGFRKVDPEFQGILYNFT 80 (105)
T ss_pred CCCcHHHHHHHHHhCCCCCCEEEECCCCCEEEEcCHHHHHHHHHHHhcCCCCHHHHHHHHHhcCCEEeccccccccccCC
Confidence 4799999999999999999999999999999999999999999999999999999999999999999875
Q ss_pred -CCceEecccccccccccccceeec
Q 018495 79 -DKWEFANEWFLRGQKHLLKNIVRR 102 (355)
Q Consensus 79 -d~~eF~He~F~RG~~~LL~~IkRk 102 (355)
+.|+|+|++|+||+++||..|+||
T Consensus 81 ~~~~~F~h~~F~Rg~~~lL~~I~Rk 105 (105)
T smart00415 81 SDQWEFANPDFVRGQPELLRNIKRK 105 (105)
T ss_pred CCceEEECcCccCcCHHHHHhCcCC
Confidence 789999999999999999999996
No 4
>PF00447 HSF_DNA-bind: HSF-type DNA-binding; InterPro: IPR000232 Heat shock factor (HSF) is a transcriptional activator of heat shock genes []: it binds specifically to heat shock promoter elements, which are palindromic sequences rich with repetitive purine and pyrimidine motifs []. Under normal conditions, HSF is a homo-trimeric cytoplasmic protein, but heat shock activation results in relocalisation to the nucleus []. Each HSF monomer contains one C-terminal and three N-terminal leucine zipper repeats []. Point mutations in these regions result in disruption of cellular localisation, rendering the protein constitutively nuclear []. Two sequences flanking the N-terminal zippers fit the consensus of a bi- partite nuclear localisation signal (NLS). Interaction between the N- and C-terminal zippers may result in a structure that masks the NLS sequences: following activation of HSF, these may then be unmasked, resulting in relocalisation of the protein to the nucleus []. The DNA-binding component of HSF lies to the N terminus of the first NLS region, and is referred to as the HSF domain.; GO: 0003700 sequence-specific DNA binding transcription factor activity, 0043565 sequence-specific DNA binding, 0006355 regulation of transcription, DNA-dependent, 0005634 nucleus; PDB: 1FBQ_B 1FYL_B 1FBS_A 1FYM_B 3HTS_B 2HTS_A 3HSF_A 1FBU_B 1FYK_A 2LDU_A ....
Probab=100.00 E-value=2.5e-35 Score=243.26 Aligned_cols=93 Identities=53% Similarity=0.977 Sum_probs=81.8
Q ss_pred hHHHHHHHhhcCCCCCCcEEEcCCCCeEEEeCCchhhhhhcccccCCCChhHHHhhhcccCccccCCC---------Cce
Q 018495 12 PFVMKTYQMVNDPTTDSLISWGKANNSFIVVDPLDFSQRILPAYFKHNNFSSFVRQLNTYGFRKVDPD---------KWE 82 (355)
Q Consensus 12 ~Fl~KLy~mLed~~~~~iIsWs~~G~sFvV~d~~~F~~~VLP~yFKh~nfsSFvRQLN~YGFrKv~pd---------~~e 82 (355)
+||.|||+||+|++++++|+|+++|++|||+|+++|+++|||+||+|+||+||+||||+|||+|+..+ .|+
T Consensus 1 ~F~~kL~~~l~~~~~~~~I~W~~~G~~fiI~d~~~f~~~vLp~~F~~~~~~SF~RQLn~yGF~k~~~~~~~~~~~~~~~~ 80 (103)
T PF00447_consen 1 KFLSKLYEMLEDPENSDIIRWSPDGDSFIIHDPEEFEKEVLPKYFKHSNFSSFVRQLNMYGFKKVSSDSNQSSLSSNIWE 80 (103)
T ss_dssp HHHHHHHHHHCTTTTTTTCEECTTSSEEEES-HHHHHHHTHHHHSST--HHHHHHHHHHTTEEECC-SSCTTSSTTTTEE
T ss_pred ChHHHHHHHHcCCCCCCEEEEeCCCCEEEEeecHHHhhhccccccCccccceeeeEeeeeeeEEEecCccccccCCCCeE
Confidence 59999999999999999999999999999999999999999999999999999999999999999743 399
Q ss_pred EecccccccccccccceeeccC
Q 018495 83 FANEWFLRGQKHLLKNIVRRKH 104 (355)
Q Consensus 83 F~He~F~RG~~~LL~~IkRkk~ 104 (355)
|+|++|+||++++|..|+|+++
T Consensus 81 f~h~~F~r~~~~lL~~I~r~~~ 102 (103)
T PF00447_consen 81 FYHPNFRRGQPDLLSKIKRRKS 102 (103)
T ss_dssp EEETT-BTTBCCCTTTS---TT
T ss_pred ECCcCccCCCHHHHhhCccCCC
Confidence 9999999999999999999876
No 5
>PF00178 Ets: Ets-domain; InterPro: IPR000418 Transcription factors are protein molecules that bind to specific DNA sequences in the genome, resulting in the induction or inhibition of gene transcription []. The ets oncogene is such a factor, possessing a region of 85-90 amino acids known as the ETS (erythroblast transformation specific) domain [, , ]. This domain is rich in positively-charged and aromatic residues, and binds to purine-rich segments of DNA. The ETS domain has been identified in other transcription factors such as PU.1, human erg, human elf-1, human elk-1, GA binding protein, and a number of others [, , ]. It is generally localized at the C terminus of the protein, with the exception of ELF-1, ELK-1, ELK-3, ELK-4 and ERF where it is found at the N terminus. NMR-analysis of the structure of the Ets domains revealed that it contains three alpha-helixes (1-3) and four-stranded beta-sheets (1-4) arranged in the order alpha1-beta1-beta2-alpha2-alpha3-beta3-beta4 forming a winged helix-turn-helix (wHTH) topology []. The third alpha-helix is responsive to contact to the major groove of the DNA. Different members of the Ets family proteins display distinct DNA binding specificities. The Ets domains and the flanking amino acid sequences of the proteins influence the binding affinity, and the alteration of a single amino acid in the Ets domain can change its DNA binding specificities. Avian leukemia virus E26 is a replication defective retrovirus that induces a mixed erythroid/myeloid leukemia in chickens.This virus carries two distinct oncogenes: v-myb and v-ets. The ets portion of this oncogene is required for the induction of erythroblastosis. V-ets and c-ets-1, its cellular progenitor, have been shown [] to be nuclear DNA-binding proteins. Ets-1 differs slightly from v-ets at its carboxy-terminal region. In most species where it has been sequenced, c-ets-1 exists in various isoforms generated by alternative splicing and differential phosphorylation.; GO: 0003700 sequence-specific DNA binding transcription factor activity, 0043565 sequence-specific DNA binding, 0006355 regulation of transcription, DNA-dependent; PDB: 1DUX_F 4AVP_B 1HBX_G 1BC7_C 1K6O_A 1BC8_C 1PUE_E 1FLI_A 2DAO_A 1WWX_A ....
Probab=96.10 E-value=0.0035 Score=51.29 Aligned_cols=71 Identities=20% Similarity=0.336 Sum_probs=51.4
Q ss_pred HHHHHHhhcCCCCCCcEEEcC-CCCeEEEeCCchhhhhhcc-cccCCCChhHHHhhhcccCc----cccCCCCceEe
Q 018495 14 VMKTYQMVNDPTTDSLISWGK-ANNSFIVVDPLDFSQRILP-AYFKHNNFSSFVRQLNTYGF----RKVDPDKWEFA 84 (355)
Q Consensus 14 l~KLy~mLed~~~~~iIsWs~-~G~sFvV~d~~~F~~~VLP-~yFKh~nfsSFvRQLN~YGF----rKv~pd~~eF~ 84 (355)
..=|.++|+|++..++|+|.. ++.-|.|.|++++++.-=- +--...+|.++-|-|..|.= .||...+..|.
T Consensus 5 w~FLl~LL~d~~~~~~I~Wt~~~~~eFki~d~~~vA~lWG~~k~~~~m~yeklsR~LR~yy~k~il~kv~g~r~~Y~ 81 (85)
T PF00178_consen 5 WQFLLELLEDPSNSDIIAWTGKRGGEFKIVDPEAVARLWGKHKNRPNMNYEKLSRALRYYYKKGILEKVKGQRLVYR 81 (85)
T ss_dssp HHHHHHHHHSGGGTTTEEEEETSTTEEEESSHHHHHHHHHHHTTSTT-SHHHHHHHHHHHHHTTSEEEETTSTTEEE
T ss_pred HHHHHHHhcCccCCCeeEeeccCCCeEEecCHHHHHHHHHHHcCCccccHHHHHHHHHHHhhCCeEEecCCcEEEEe
Confidence 345788999999999999999 9999999999999874311 22345689999999977632 24444555543
No 6
>smart00413 ETS erythroblast transformation specific domain. variation of the helix-turn-helix motif
Probab=94.49 E-value=0.054 Score=44.83 Aligned_cols=57 Identities=21% Similarity=0.385 Sum_probs=44.9
Q ss_pred HHHHHhhcCCCCCCcEEEcC-CCCeEEEeCCchhhhhhcc-cccCCCChhHHHhhhccc
Q 018495 15 MKTYQMVNDPTTDSLISWGK-ANNSFIVVDPLDFSQRILP-AYFKHNNFSSFVRQLNTY 71 (355)
Q Consensus 15 ~KLy~mLed~~~~~iIsWs~-~G~sFvV~d~~~F~~~VLP-~yFKh~nfsSFvRQLN~Y 71 (355)
.=|.++|.|+++.++|+|.. ++.-|.+.|+++.++.-=. +-=...+|..+-|-|..|
T Consensus 6 ~FL~~LL~d~~~~~~I~W~~k~~g~Fkl~~~~~vA~lWG~~Knk~~M~YeklSRaLRyy 64 (87)
T smart00413 6 QFLLDLLLDPENGDIIRWTDRDGGEFKLVDPEEVARLWGQRKNKPNMNYEKLSRALRYY 64 (87)
T ss_pred HHHHHHHcCccCCCeEEeeCCCCCEEEecCHHHHHHHHhhhcCCCCCCHHHHHHHHHHH
Confidence 34789999999999999998 6889999999988774322 222357899999998776
No 7
>KOG3806 consensus Predicted transcription factor [Transcription]
Probab=93.02 E-value=0.17 Score=46.80 Aligned_cols=66 Identities=17% Similarity=0.276 Sum_probs=50.9
Q ss_pred CCCCCChHHHHHHHhhcCCCCCCcEEEcC-CCCeEEEeCCchhhhhhccc-ccCCCChhHHHhhhccc
Q 018495 6 TNNVIAPFVMKTYQMVNDPTTDSLISWGK-ANNSFIVVDPLDFSQRILPA-YFKHNNFSSFVRQLNTY 71 (355)
Q Consensus 6 ~~~~~p~Fl~KLy~mLed~~~~~iIsWs~-~G~sFvV~d~~~F~~~VLP~-yFKh~nfsSFvRQLN~Y 71 (355)
..++.-.-..=|-++|+|++..++|+|.. +|--|++.||++-++..=-+ -=.+-||.-.-|-|..|
T Consensus 64 ~~sg~iqLwqFLleLl~d~~~~~~I~Wtg~~g~EFkl~dp~eVArlWG~rK~kp~MNYdKLSRaLRyy 131 (177)
T KOG3806|consen 64 SGSGQIQLWQFLLELLQDESNAHIIAWTGKDGLEFKLVDPDEVARLWGARKNKPNMNYDKLSRALRYY 131 (177)
T ss_pred CCCchhhHHHHHHHHHhCcccCCeeEEeCCCCceEEecCHHHHHHHHhhhhCCCCCCHHHHHHHHHHH
Confidence 34454555666788999999999999998 78789999999999864333 22367888888888765
No 8
>PF04340 DUF484: Protein of unknown function, DUF484; InterPro: IPR007435 This family consists of several proteins of uncharacterised function.; PDB: 3E98_B.
Probab=91.88 E-value=0.59 Score=43.62 Aligned_cols=77 Identities=16% Similarity=0.241 Sum_probs=44.6
Q ss_pred ecccccccccccccceeeccCCCCCccccccccCCCCCCCCChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHH
Q 018495 84 ANEWFLRGQKHLLKNIVRRKHSSNRSAHHMMMRGGAGDQDLDDEEIVMEIARLRQEQKSLDEELQGMNKRLEATERRPEQ 163 (355)
Q Consensus 84 ~He~F~RG~~~LL~~IkRkk~~s~~~s~~~q~~~~~~~~~~~~~~L~~EIerLKreq~~L~qEL~~Lrqr~q~~Eqrqqq 163 (355)
.||.|...+++||..|+=.-+.. ..-.-.+.++++|++++..|+.+|..|-..-+.-++..++
T Consensus 17 ~~PdFf~~~~~ll~~l~~ph~~~-----------------~avSL~erQ~~~LR~~~~~L~~~l~~Li~~Ar~Ne~~~~~ 79 (225)
T PF04340_consen 17 QHPDFFERHPELLAELRLPHPSG-----------------GAVSLVERQLERLRERNRQLEEQLEELIENARENEAIFQR 79 (225)
T ss_dssp -----------------------------------------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred hCcHHHHhCHHHHHHcCCCCCCC-----------------CcccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 89999999999999887422211 1233556799999999999999999999999999999999
Q ss_pred HHHHHHHhhcCCCc
Q 018495 164 MMAFLYKVVEDPDL 177 (355)
Q Consensus 164 Mm~FLakvvqnP~f 177 (355)
+..+..+++.-.++
T Consensus 80 ~~~l~l~LL~a~sl 93 (225)
T PF04340_consen 80 LHRLVLALLAARSL 93 (225)
T ss_dssp HHHHHHHHHC--SH
T ss_pred HHHHHHHHhcCCCH
Confidence 99999999987665
No 9
>TIGR03752 conj_TIGR03752 integrating conjugative element protein, PFL_4705 family. Members of this protein family are found occasionally on plasmids such as the Pseudomonas putida toluene catabolic TOL plasmid pWWO_p085. Usually, however, they are found on the bacterial main chromosome in regions flanked by markers of conjugative transfer and/or transposition.
Probab=90.90 E-value=2.8 Score=44.19 Aligned_cols=42 Identities=21% Similarity=0.319 Sum_probs=31.1
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHH
Q 018495 126 DEEIVMEIARLRQEQKSLDEELQGMNKRLEATERRPEQMMAF 167 (355)
Q Consensus 126 ~~~L~~EIerLKreq~~L~qEL~~Lrqr~q~~EqrqqqMm~F 167 (355)
...+..+++.|.++++.|.+|..+|++|.....+++++-++-
T Consensus 68 ~k~~r~~~~~l~~~N~~l~~eN~~L~~r~~~id~~i~~av~~ 109 (472)
T TIGR03752 68 VKELRKRLAKLISENEALKAENERLQKREQSIDQQIQQAVQS 109 (472)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHh
Confidence 446777788888888888888888888777777776665544
No 10
>PF03310 Cauli_DNA-bind: Caulimovirus DNA-binding protein; InterPro: IPR004986 The gene III product (P15) of cauliflower mosaic virus (CaMV) is a DNA binding protein in which the DNA binding activity is located on its C-terminal part. A family of related proteins is expressed by other members of the Caulimoviridae.; GO: 0003677 DNA binding; PDB: 3F6N_A 3K4T_D.
Probab=84.27 E-value=2.7 Score=36.86 Aligned_cols=56 Identities=27% Similarity=0.464 Sum_probs=45.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHhhcCCCcHHHHHhhhh
Q 018495 128 EIVMEIARLRQEQKSLDEELQGMNKRLEATERRPEQMMAFLYKVVEDPDLLPRIIMEKE 186 (355)
Q Consensus 128 ~L~~EIerLKreq~~L~qEL~~Lrqr~q~~EqrqqqMm~FLakvvqnP~fl~~li~q~e 186 (355)
.+..||..|..++..+...|.+|-++++.+++..++|.++-|++++| +...|.+-+
T Consensus 3 ~~~kEi~~l~~~lk~~~~~i~ailek~~s~~~~~e~lEsiAAKIIkD---isdkIdkCe 58 (121)
T PF03310_consen 3 TIIKEISELIQELKKIESDIKAILEKLQSTEQDQENLESIAAKIIKD---ISDKIDKCE 58 (121)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHTS--HHHHHHHHHHHHHHH---HHHHHHT-T
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHhhcCCCchHHHHHHHHHHHHHH---HHHHHHhch
Confidence 35678999999999999999999889888888889999999999988 555566554
No 11
>COG3074 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=84.17 E-value=2.9 Score=33.74 Aligned_cols=34 Identities=35% Similarity=0.503 Sum_probs=27.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhH
Q 018495 128 EIVMEIARLRQEQKSLDEELQGMNKRLEATERRP 161 (355)
Q Consensus 128 ~L~~EIerLKreq~~L~qEL~~Lrqr~q~~Eqrq 161 (355)
-|..||+.||+.++.|.+|...++...+.+++.-
T Consensus 22 LLQmEieELKEknn~l~~e~q~~q~~reaL~~en 55 (79)
T COG3074 22 LLQMEIEELKEKNNSLSQEVQNAQHQREALEREN 55 (79)
T ss_pred HHHHHHHHHHHHhhHhHHHHHHHHHHHHHHHHHH
Confidence 5678999999999999999998776666555443
No 12
>PF06005 DUF904: Protein of unknown function (DUF904); InterPro: IPR009252 Cell division protein ZapB is a non-essential, abundant cell division factor that is required for proper Z-ring formation. It is recruited early to the divisome by direct interaction with FtsZ, stimulating Z-ring assembly and thereby promoting cell division earlier in the cell cycle. Its recruitment to the Z-ring requires functional FtsA or ZipA.; GO: 0000917 barrier septum formation, 0043093 cytokinesis by binary fission, 0005737 cytoplasm; PDB: 2JEE_A.
Probab=83.15 E-value=6.9 Score=31.21 Aligned_cols=41 Identities=22% Similarity=0.328 Sum_probs=23.7
Q ss_pred HHHHHHHHHHHH-------HHHHHHHHHHHHHHHHHHHHhHHHHHHHH
Q 018495 128 EIVMEIARLRQE-------QKSLDEELQGMNKRLEATERRPEQMMAFL 168 (355)
Q Consensus 128 ~L~~EIerLKre-------q~~L~qEL~~Lrqr~q~~EqrqqqMm~FL 168 (355)
.|..+++.||++ +..|..|...|++.+...+.++..|+.-|
T Consensus 22 ~Lq~e~eeLke~n~~L~~e~~~L~~en~~L~~e~~~~~~rl~~LL~kl 69 (72)
T PF06005_consen 22 LLQMENEELKEKNNELKEENEELKEENEQLKQERNAWQERLRSLLGKL 69 (72)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Confidence 455666666666 45555555555555555555665555443
No 13
>PRK10963 hypothetical protein; Provisional
Probab=82.99 E-value=4.9 Score=37.89 Aligned_cols=77 Identities=16% Similarity=0.173 Sum_probs=59.2
Q ss_pred ecccccccccccccceeeccCCCCCccccccccCCCCCCCCChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHH
Q 018495 84 ANEWFLRGQKHLLKNIVRRKHSSNRSAHHMMMRGGAGDQDLDDEEIVMEIARLRQEQKSLDEELQGMNKRLEATERRPEQ 163 (355)
Q Consensus 84 ~He~F~RG~~~LL~~IkRkk~~s~~~s~~~q~~~~~~~~~~~~~~L~~EIerLKreq~~L~qEL~~Lrqr~q~~Eqrqqq 163 (355)
.||.|.-.+++||..|+=.-+... .-.-.+-++++|++++..|+.+|..|-..-+.-+...++
T Consensus 14 ~~PdFf~~h~~Ll~~L~lph~~~g-----------------aVSL~ErQ~~~LR~r~~~Le~~l~~Li~~A~~Ne~l~~~ 76 (223)
T PRK10963 14 QNPDFFIRNARLVEQMRVPHPVRG-----------------TVSLVEWQMARQRNHIHVLEEEMTLLMEQAIANEDLFYR 76 (223)
T ss_pred HCchHHhhCHHHHHhccCCCCCCC-----------------eecHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 699999999999997754322110 122456789999999999999999998887777888888
Q ss_pred HHHHHHHhhcCCCc
Q 018495 164 MMAFLYKVVEDPDL 177 (355)
Q Consensus 164 Mm~FLakvvqnP~f 177 (355)
+.....+++.-.++
T Consensus 77 ~~~l~l~Ll~a~~~ 90 (223)
T PRK10963 77 LLPLQSRLAAADSL 90 (223)
T ss_pred HHHHHHHHhcCCCH
Confidence 88888888876655
No 14
>PF05377 FlaC_arch: Flagella accessory protein C (FlaC); InterPro: IPR008039 Although archaeal flagella appear superficially similar to those of bacteria, they are quite distinct []. In several archaea, the flagellin genes are followed immediately by the flagellar accessory genes flaCDEFGHIJ. The gene products may have a role in translocation, secretion, or assembly of the flagellum. FlaC is a protein whose exact role is unknown but it has been shown to be membrane-associated (by immuno-blotting fractionated cells) [].
Probab=82.96 E-value=8.4 Score=29.52 Aligned_cols=45 Identities=16% Similarity=0.346 Sum_probs=36.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHh
Q 018495 127 EEIVMEIARLRQEQKSLDEELQGMNKRLEATERRPEQMMAFLYKV 171 (355)
Q Consensus 127 ~~L~~EIerLKreq~~L~qEL~~Lrqr~q~~EqrqqqMm~FLakv 171 (355)
.+|+.++.+|.-....+..|+..+++.++.+++..+.||..-.-|
T Consensus 3 ~elEn~~~~~~~~i~tvk~en~~i~~~ve~i~envk~ll~lYE~V 47 (55)
T PF05377_consen 3 DELENELPRIESSINTVKKENEEISESVEKIEENVKDLLSLYEVV 47 (55)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 467888888888888999999999999999998888887754443
No 15
>TIGR02894 DNA_bind_RsfA transcription factor, RsfA family. In a subset of endospore-forming members of the Firmcutes, members of this protein family are found, several to a genome. Two very strongly conserved sequences regions are separated by a highly variable linker region. Much of the linker region was excised from the seed alignment for this model. A characterized member is the prespore-specific transcription RsfA from Bacillus subtilis, previously called YwfN, which is controlled by sigma factor F and seems to fine-tune expression of some genes in the sigma-F regulon. A paralog in Bacillus subtilis is designated YlbO.
Probab=80.51 E-value=6.6 Score=36.04 Aligned_cols=47 Identities=17% Similarity=0.403 Sum_probs=31.9
Q ss_pred ChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHh
Q 018495 125 DDEEIVMEIARLRQEQKSLDEELQGMNKRLEATERRPEQMMAFLYKV 171 (355)
Q Consensus 125 ~~~~L~~EIerLKreq~~L~qEL~~Lrqr~q~~EqrqqqMm~FLakv 171 (355)
++..+..+++.|+.++..|..|+..|.+++...+...+.|+.-+-++
T Consensus 105 e~~~l~~e~~~l~~~~e~Le~e~~~L~~~~~~~~eDY~~L~~Im~RA 151 (161)
T TIGR02894 105 ENERLKNQNESLQKRNEELEKELEKLRQRLSTIEEDYQTLIDIMDRA 151 (161)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 44566667777777777777777777777777777666666655443
No 16
>PRK15422 septal ring assembly protein ZapB; Provisional
Probab=72.55 E-value=19 Score=29.60 Aligned_cols=23 Identities=35% Similarity=0.562 Sum_probs=18.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHH
Q 018495 127 EEIVMEIARLRQEQKSLDEELQG 149 (355)
Q Consensus 127 ~~L~~EIerLKreq~~L~qEL~~ 149 (355)
.-|..||+.||.++..|.+|+..
T Consensus 21 ~LLqmEieELKekn~~L~~e~~~ 43 (79)
T PRK15422 21 TLLQMEIEELKEKNNSLSQEVQN 43 (79)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHH
Confidence 35678999999999888888766
No 17
>KOG4196 consensus bZIP transcription factor MafK [Transcription]
Probab=70.75 E-value=21 Score=31.87 Aligned_cols=46 Identities=24% Similarity=0.296 Sum_probs=36.6
Q ss_pred ChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHH
Q 018495 125 DDEEIVMEIARLRQEQKSLDEELQGMNKRLEATERRPEQMMAFLYK 170 (355)
Q Consensus 125 ~~~~L~~EIerLKreq~~L~qEL~~Lrqr~q~~EqrqqqMm~FLak 170 (355)
.+.+|+.+-..|.++...|.+|+.+|+.+++....+.+++..|-..
T Consensus 75 Qk~eLE~~k~~L~qqv~~L~~e~s~~~~E~da~k~k~e~l~~~~~~ 120 (135)
T KOG4196|consen 75 QKHELEKEKAELQQQVEKLKEENSRLRRELDAYKSKYEALQNSAVS 120 (135)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhh
Confidence 3567778888888888888888888888888888888888888754
No 18
>TIGR02449 conserved hypothetical protein TIGR02449. Members of this family are small proteins, typically 73 amino acids in length, with single copies in each of several Proteobacteria, including Xylella fastidiosa, Pseudomonas aeruginosa, and Xanthomonas campestris. The function is unknown.
Probab=69.42 E-value=30 Score=27.29 Aligned_cols=46 Identities=17% Similarity=0.297 Sum_probs=29.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHH-------HHHHHHHHHHhHHHHHHHHHHhhc
Q 018495 128 EIVMEIARLRQEQKSLDEELQG-------MNKRLEATERRPEQMMAFLYKVVE 173 (355)
Q Consensus 128 ~L~~EIerLKreq~~L~qEL~~-------Lrqr~q~~EqrqqqMm~FLakvvq 173 (355)
.|....++|++++..|.+++.. |.++.+..-.+++.|+.-|-.+-+
T Consensus 11 ~Li~~~~~L~~EN~~Lr~q~~~~~~ER~~L~ekne~Ar~rvEamI~RLk~leq 63 (65)
T TIGR02449 11 HLLEYLERLKSENRLLRAQEKTWREERAQLLEKNEQARQKVEAMITRLKALEQ 63 (65)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhcc
Confidence 4445555666666666665554 555666777788888888776544
No 19
>KOG3863 consensus bZIP transcription factor NRF1 [Transcription]
Probab=68.98 E-value=11 Score=40.98 Aligned_cols=94 Identities=15% Similarity=0.228 Sum_probs=54.5
Q ss_pred ccccccccccccceeeccCCCCCccccccccCCCCCCCC-ChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHH
Q 018495 86 EWFLRGQKHLLKNIVRRKHSSNRSAHHMMMRGGAGDQDL-DDEEIVMEIARLRQEQKSLDEELQGMNKRLEATERRPEQM 164 (355)
Q Consensus 86 e~F~RG~~~LL~~IkRkk~~s~~~s~~~q~~~~~~~~~~-~~~~L~~EIerLKreq~~L~qEL~~Lrqr~q~~EqrqqqM 164 (355)
..|..-+..|...|+||...+......-. + .+ .-..|+.+|+.|+.++..|.+|-..+..-+..+.+++..|
T Consensus 479 ~~lte~QLslIrDIRRRgKNkvAAQnCRK-R------KLd~I~nLE~ev~~l~~eKeqLl~Er~~~d~~L~~~kqqls~L 551 (604)
T KOG3863|consen 479 YKLTEEQLSLIRDIRRRGKNKVAAQNCRK-R------KLDCILNLEDEVEKLQKEKEQLLRERDELDSTLGVMKQQLSEL 551 (604)
T ss_pred cccCHHHHHHhhccccccccchhccchhh-h------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34566688899999998554321111100 0 01 1236677777777777777777666666666655555555
Q ss_pred HHHHHHhhcCCC----cHHHHHhhhh
Q 018495 165 MAFLYKVVEDPD----LLPRIIMEKE 186 (355)
Q Consensus 165 m~FLakvvqnP~----fl~~li~q~e 186 (355)
-.=+.+-+.+++ -..+++++..
T Consensus 552 ~~~Vf~~lrd~eg~~~sp~~yalq~a 577 (604)
T KOG3863|consen 552 YQEVFQQLRDEEGNPYSPSQYALQQA 577 (604)
T ss_pred HHHHHHHHhccccCccCHHHHHHHhh
Confidence 555555555554 4455555543
No 20
>PF05524 PEP-utilisers_N: PEP-utilising enzyme, N-terminal; InterPro: IPR008731 This sequence identifies proteins which are a component of the phosphoenolpyruvate:sugar phosphotransferase system (PTS), a major carbohydrate active transport system. The PTS system is found throughout the bacterial kingdom, and is responsible for the coupled phosphorylation and translocation of numerous sugars across the cytoplasmic membrane []. This entry represents the N-terminal domain of enzyme I (EIN) which transfers the phosphoryl group from phosphoenolpyruvate (PEP) to the phosphoryl carrier protein (HPr) which in turn phosphorylates a group of membrane-associated proteins, known as enzyme II. The N-terminal domain of EI (EIN) extends from residues 1 to 259 and can be phosphorylated in a fully reversible manner by phosphorylated HPr. EIN, however, cannot be autophosphorylated by PEP [, ].; GO: 0005351 sugar:hydrogen symporter activity, 0008965 phosphoenolpyruvate-protein phosphotransferase activity, 0009401 phosphoenolpyruvate-dependent sugar phosphotransferase system, 0005737 cytoplasm; PDB: 2WQD_A 2XDF_B 2HWG_A 3EZB_A 2L5H_A 3EZA_A 1EZB_A 2EZA_A 1EZA_A 1EZC_A ....
Probab=68.16 E-value=11 Score=31.68 Aligned_cols=60 Identities=25% Similarity=0.371 Sum_probs=47.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HhHHHHHHHHHHhhcCCCcHHHHHhhhh
Q 018495 127 EEIVMEIARLRQEQKSLDEELQGMNKRLEATE-RRPEQMMAFLYKVVEDPDLLPRIIMEKE 186 (355)
Q Consensus 127 ~~L~~EIerLKreq~~L~qEL~~Lrqr~q~~E-qrqqqMm~FLakvvqnP~fl~~li~q~e 186 (355)
...+.|+++|+.-......||..|.++....- .....|+..-..+++||.|...+.....
T Consensus 31 ~~~~~E~~rl~~Al~~~~~eL~~l~~~~~~~~~~~~a~If~ah~~~L~D~~l~~~v~~~I~ 91 (123)
T PF05524_consen 31 DDIEAEIERLEQALEKAREELEQLAERAESKLGEEEAAIFEAHLMMLEDPELIDEVEELIR 91 (123)
T ss_dssp SHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCHSSCTHHHHHHHHHHT-HHHHHHHHHHHH
T ss_pred CCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccccHHHHHHHHHHHhcCHhHHHHHHHHHh
Confidence 57889999999999999999999999866543 3344789999999999999877655443
No 21
>COG3159 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=66.70 E-value=11 Score=36.28 Aligned_cols=79 Identities=19% Similarity=0.251 Sum_probs=59.2
Q ss_pred ceEecccccccccccccceeeccCCCCCccccccccCCCCCCCCChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 018495 81 WEFANEWFLRGQKHLLKNIVRRKHSSNRSAHHMMMRGGAGDQDLDDEEIVMEIARLRQEQKSLDEELQGMNKRLEATERR 160 (355)
Q Consensus 81 ~eF~He~F~RG~~~LL~~IkRkk~~s~~~s~~~q~~~~~~~~~~~~~~L~~EIerLKreq~~L~qEL~~Lrqr~q~~Eqr 160 (355)
|-+.||.|.+-+++|+..|.-..+.... -.--+-++++++..+..|..|+..|-+.-...++.
T Consensus 12 yL~~hPeFf~~h~~Ll~~L~lph~~~~t-----------------VSLve~ql~r~R~~~~~Le~~l~~L~~~A~~N~~l 74 (218)
T COG3159 12 YLRQHPEFFIQHAELLEELRLPHPVAGT-----------------VSLVERQLARLRNRIRELEEELAALMENARANERL 74 (218)
T ss_pred HHHhCcHHHHhCHHHHHHcCCCCCCCCe-----------------eehHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHH
Confidence 4568999999999999988765433211 12334688999999999999999988877777777
Q ss_pred HHHHHHHHHHhhcCCC
Q 018495 161 PEQMMAFLYKVVEDPD 176 (355)
Q Consensus 161 qqqMm~FLakvvqnP~ 176 (355)
+.++++....+++-.+
T Consensus 75 f~r~~~lq~~Ll~a~s 90 (218)
T COG3159 75 FYRLHALQLDLLDARS 90 (218)
T ss_pred HHHHHHHHHHHHhccc
Confidence 7777777777776443
No 22
>PF02183 HALZ: Homeobox associated leucine zipper; InterPro: IPR003106 This region is a plant specific leucine zipper that is always found associated with a homeobox []. ; GO: 0003677 DNA binding, 0006355 regulation of transcription, DNA-dependent, 0005634 nucleus
Probab=66.68 E-value=12 Score=27.27 Aligned_cols=28 Identities=18% Similarity=0.287 Sum_probs=12.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 018495 128 EIVMEIARLRQEQKSLDEELQGMNKRLE 155 (355)
Q Consensus 128 ~L~~EIerLKreq~~L~qEL~~Lrqr~q 155 (355)
.|....+.|+.++..|..|...|+.++.
T Consensus 9 ~LK~~yd~Lk~~~~~L~~E~~~L~aev~ 36 (45)
T PF02183_consen 9 ALKASYDSLKAEYDSLKKENEKLRAEVQ 36 (45)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3334444444444444444444444433
No 23
>PF10224 DUF2205: Predicted coiled-coil protein (DUF2205); InterPro: IPR019357 This entry represents a highly conserved 100 residue region which is likely to have a coiled-coil structure. The exact function is unknown.
Probab=66.57 E-value=32 Score=28.14 Aligned_cols=50 Identities=18% Similarity=0.387 Sum_probs=39.1
Q ss_pred ChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHhhcC
Q 018495 125 DDEEIVMEIARLRQEQKSLDEELQGMNKRLEATERRPEQMMAFLYKVVED 174 (355)
Q Consensus 125 ~~~~L~~EIerLKreq~~L~qEL~~Lrqr~q~~EqrqqqMm~FLakvvqn 174 (355)
.+..|..++..|+.....|+..+...+..++.++..-+-|-.|+..++..
T Consensus 17 ~k~~Li~ei~~LQ~sL~~L~~Rve~Vk~E~~kL~~EN~~Lq~YI~nLm~~ 66 (80)
T PF10224_consen 17 EKEELIQEILELQDSLEALSDRVEEVKEENEKLESENEYLQQYIGNLMSS 66 (80)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 35688888888999999999888888888887777666666777766653
No 24
>PF10779 XhlA: Haemolysin XhlA; InterPro: IPR019715 Haemolysin XhlA is a cell-surface associated haemolysin that lyses the two most prevalent types of insect immune cells (granulocytes and plasmatocytes) as well as rabbit and horse erythrocytes [].
Probab=61.87 E-value=41 Score=26.26 Aligned_cols=49 Identities=18% Similarity=0.310 Sum_probs=26.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHhhcCCC
Q 018495 128 EIVMEIARLRQEQKSLDEELQGMNKRLEATERRPEQMMAFLYKVVEDPD 176 (355)
Q Consensus 128 ~L~~EIerLKreq~~L~qEL~~Lrqr~q~~EqrqqqMm~FLakvvqnP~ 176 (355)
.+.+++.+++.+++.+...+..+.++...++..++.+-.-|.++-.+-.
T Consensus 3 ~i~e~l~~ie~~l~~~~~~i~~lE~~~~~~e~~i~~~~~~l~~I~~n~k 51 (71)
T PF10779_consen 3 DIKEKLNRIETKLDNHEERIDKLEKRDAANEKDIKNLNKQLEKIKSNTK 51 (71)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3445555666665555555555555555555555555555555444433
No 25
>PF04977 DivIC: Septum formation initiator; InterPro: IPR007060 DivIC, from the spore-forming, Gram-positive bacterium Bacillus subtilis, is necessary for both vegetative and sporulation septum formation []. These proteins are mainly composed of an N-terminal coiled-coil. DivIB, DivIC and FtsL inter-depend on each other for stabilisation and localisation. The latter two form a heterodimer. DivIC is always centre cell but the other two associate with it during septation [].; GO: 0007049 cell cycle
Probab=61.33 E-value=39 Score=25.75 Aligned_cols=44 Identities=25% Similarity=0.419 Sum_probs=19.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHhhcCCCcHHHHHh
Q 018495 133 IARLRQEQKSLDEELQGMNKRLEATERRPEQMMAFLYKVVEDPDLLPRIIM 183 (355)
Q Consensus 133 IerLKreq~~L~qEL~~Lrqr~q~~EqrqqqMm~FLakvvqnP~fl~~li~ 183 (355)
+..++++.+.|..++..++++.+.++..++. +-.||+++.+++.
T Consensus 19 ~~~~~~ei~~l~~~i~~l~~e~~~L~~ei~~-------l~~~~~~ie~~AR 62 (80)
T PF04977_consen 19 YYQLNQEIAELQKEIEELKKENEELKEEIER-------LKNDPDYIEKVAR 62 (80)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-------hcCCHHHHHHHHH
Confidence 3344444444444444444444443333322 2235666655443
No 26
>PF12709 Kinetocho_Slk19: Central kinetochore-associated; InterPro: IPR024312 This is a family of proteins integrally involved in the central kinetochore. Slk19 is a yeast member and it may play an important role in the timing of nuclear migration. It may also participate, directly or indirectly, in the maintenance of centromeric tensile strength during mitotic stagnation, for instance during activation of checkpoint controls, when cells need to preserve nuclear integrity until cell cycle progression can be resumed [].
Probab=61.32 E-value=30 Score=28.87 Aligned_cols=41 Identities=20% Similarity=0.420 Sum_probs=31.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHH
Q 018495 128 EIVMEIARLRQEQKSLDEELQGMNKRLEATERRPEQMMAFL 168 (355)
Q Consensus 128 ~L~~EIerLKreq~~L~qEL~~Lrqr~q~~EqrqqqMm~FL 168 (355)
..+..|+.|..++..|..|+..|+.++.....--++|+..|
T Consensus 46 rwek~v~~L~~e~~~l~~E~e~L~~~l~~e~~Ek~~Ll~ll 86 (87)
T PF12709_consen 46 RWEKKVDELENENKALKRENEQLKKKLDTEREEKQELLKLL 86 (87)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Confidence 35678888888888888888888888877666666666543
No 27
>PRK10803 tol-pal system protein YbgF; Provisional
Probab=61.17 E-value=28 Score=33.71 Aligned_cols=41 Identities=15% Similarity=0.242 Sum_probs=21.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHH
Q 018495 128 EIVMEIARLRQEQKSLDEELQGMNKRLEATERRPEQMMAFL 168 (355)
Q Consensus 128 ~L~~EIerLKreq~~L~qEL~~Lrqr~q~~EqrqqqMm~FL 168 (355)
+|..+|+.|++|...|.-+++.+.-+++.++++++.+-.-|
T Consensus 58 ~l~~ql~~lq~ev~~LrG~~E~~~~~l~~~~~rq~~~y~dl 98 (263)
T PRK10803 58 QLQQQLSDNQSDIDSLRGQIQENQYQLNQVVERQKQIYLQI 98 (263)
T ss_pred HHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHH
Confidence 44455555555555555555555555555555554444433
No 28
>PF00170 bZIP_1: bZIP transcription factor cAMP response element binding (CREB) protein signature fos transforming protein signature jun transcription factor signature; InterPro: IPR011616 The basic-leucine zipper (bZIP) transcription factors [, ] of eukaryotic are proteins that contain a basic region mediating sequence-specific DNA-binding followed by a leucine zipper region (see IPR002158 from INTERPRO) required for dimerization.; GO: 0003700 sequence-specific DNA binding transcription factor activity, 0043565 sequence-specific DNA binding, 0046983 protein dimerization activity, 0006355 regulation of transcription, DNA-dependent; PDB: 2H7H_B 2OQQ_B 1S9K_E 1JNM_A 1JUN_A 1FOS_H 1A02_J 1T2K_C 1CI6_A 1DH3_C ....
Probab=60.38 E-value=35 Score=25.75 Aligned_cols=32 Identities=25% Similarity=0.499 Sum_probs=21.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 018495 127 EEIVMEIARLRQEQKSLDEELQGMNKRLEATE 158 (355)
Q Consensus 127 ~~L~~EIerLKreq~~L~qEL~~Lrqr~q~~E 158 (355)
..|+.++..|..++..|..++..|++.+..+.
T Consensus 29 ~~Le~~~~~L~~en~~L~~~~~~L~~~~~~L~ 60 (64)
T PF00170_consen 29 EELEEKVEELESENEELKKELEQLKKEIQSLK 60 (64)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 36666777777777777777777766665544
No 29
>smart00338 BRLZ basic region leucin zipper.
Probab=60.22 E-value=30 Score=26.15 Aligned_cols=31 Identities=26% Similarity=0.502 Sum_probs=20.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 018495 127 EEIVMEIARLRQEQKSLDEELQGMNKRLEAT 157 (355)
Q Consensus 127 ~~L~~EIerLKreq~~L~qEL~~Lrqr~q~~ 157 (355)
..|+.+++.|..++..|..++..|+..+..+
T Consensus 29 ~~Le~~~~~L~~en~~L~~~~~~l~~e~~~l 59 (65)
T smart00338 29 EELERKVEQLEAENERLKKEIERLRRELEKL 59 (65)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3666677777777777777776666665544
No 30
>PF04977 DivIC: Septum formation initiator; InterPro: IPR007060 DivIC, from the spore-forming, Gram-positive bacterium Bacillus subtilis, is necessary for both vegetative and sporulation septum formation []. These proteins are mainly composed of an N-terminal coiled-coil. DivIB, DivIC and FtsL inter-depend on each other for stabilisation and localisation. The latter two form a heterodimer. DivIC is always centre cell but the other two associate with it during septation [].; GO: 0007049 cell cycle
Probab=59.70 E-value=31 Score=26.34 Aligned_cols=31 Identities=26% Similarity=0.388 Sum_probs=21.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 018495 127 EEIVMEIARLRQEQKSLDEELQGMNKRLEAT 157 (355)
Q Consensus 127 ~~L~~EIerLKreq~~L~qEL~~Lrqr~q~~ 157 (355)
..+..+++.|+++.+.+.+|...|+++++..
T Consensus 20 ~~~~~ei~~l~~~i~~l~~e~~~L~~ei~~l 50 (80)
T PF04977_consen 20 YQLNQEIAELQKEIEELKKENEELKEEIERL 50 (80)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 3556677777777777777777777776665
No 31
>PF11853 DUF3373: Protein of unknown function (DUF3373); InterPro: IPR021803 This family of proteins are functionally uncharacterised. This protein is found in bacteria. Proteins in this family are typically between 472 to 574 amino acids in length.
Probab=58.53 E-value=8.5 Score=40.91 Aligned_cols=32 Identities=19% Similarity=0.505 Sum_probs=24.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 018495 128 EIVMEIARLRQEQKSLDEELQGMNKRLEATER 159 (355)
Q Consensus 128 ~L~~EIerLKreq~~L~qEL~~Lrqr~q~~Eq 159 (355)
.++++|+.|+++++.|++|+..|.+++...|+
T Consensus 28 ~~~qkie~L~kql~~Lk~q~~~l~~~v~k~e~ 59 (489)
T PF11853_consen 28 DLLQKIEALKKQLEELKAQQDDLNDRVDKVEK 59 (489)
T ss_pred HHHHHHHHHHHHHHHHHHhhcccccccchhhH
Confidence 44448888888888888888888887777665
No 32
>TIGR00219 mreC rod shape-determining protein MreC. MreC (murein formation C) is involved in the rod shape determination in E. coli, and more generally in cell shape determination of bacteria whether or not they are rod-shaped. Cells defective in MreC are round. Species with MreC include many of the Proteobacteria, Gram-positives, and spirochetes.
Probab=56.11 E-value=24 Score=34.63 Aligned_cols=28 Identities=29% Similarity=0.387 Sum_probs=16.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 018495 130 VMEIARLRQEQKSLDEELQGMNKRLEAT 157 (355)
Q Consensus 130 ~~EIerLKreq~~L~qEL~~Lrqr~q~~ 157 (355)
...+..|++|++.|.+|+..|+++++..
T Consensus 65 ~~~~~~l~~EN~~Lr~e~~~l~~~~~~~ 92 (283)
T TIGR00219 65 LKDVNNLEYENYKLRQELLKKNQQLEIL 92 (283)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3455566667777777766665555443
No 33
>PF13747 DUF4164: Domain of unknown function (DUF4164)
Probab=54.90 E-value=57 Score=26.88 Aligned_cols=47 Identities=23% Similarity=0.323 Sum_probs=39.8
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHhh
Q 018495 126 DEEIVMEIARLRQEQKSLDEELQGMNKRLEATERRPEQMMAFLYKVV 172 (355)
Q Consensus 126 ~~~L~~EIerLKreq~~L~qEL~~Lrqr~q~~EqrqqqMm~FLakvv 172 (355)
...++.+|++|..+...|-+||.....+....+..+..+..-|-.++
T Consensus 34 ~~~~e~ei~~l~~dr~rLa~eLD~~~ar~~~Le~~~~Evs~rL~~a~ 80 (89)
T PF13747_consen 34 RDELEEEIQRLDADRSRLAQELDQAEARANRLEEANREVSRRLDSAI 80 (89)
T ss_pred hhhHHHHHHHHHhhHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHH
Confidence 35888999999999999999999999988888888887777776655
No 34
>PF10211 Ax_dynein_light: Axonemal dynein light chain; InterPro: IPR019347 Axonemal dynein light chain proteins play a dynamic role in flagellar and cilial motility. Eukaryotic cilia and flagella are complex organelles consisting of a core structure, the axoneme, which is composed of nine microtubule doublets forming a cylinder that surrounds a pair of central singlet microtubules. This ultra-structural arrangement seems to be one of the most stable micro-tubular assemblies known and is responsible for the flagellar and ciliary movement of a large number of organisms ranging from protozoan to mammals. This light chain interacts directly with the N-terminal half of the heavy chains [].
Probab=53.44 E-value=44 Score=30.97 Aligned_cols=47 Identities=26% Similarity=0.378 Sum_probs=36.8
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHhh
Q 018495 126 DEEIVMEIARLRQEQKSLDEELQGMNKRLEATERRPEQMMAFLYKVV 172 (355)
Q Consensus 126 ~~~L~~EIerLKreq~~L~qEL~~Lrqr~q~~EqrqqqMm~FLakvv 172 (355)
...+..+|..|+.+...|..++..++.+.+..+++.+...+-..+..
T Consensus 122 ~~~l~~~i~~L~~e~~~L~~~~~~l~~~~e~~ek~~~e~~~~~~k~~ 168 (189)
T PF10211_consen 122 KQELEEEIEELEEEKEELEKQVQELKNKCEQLEKREEELRQEEEKKH 168 (189)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 45788899999999999999999999888888777666555544444
No 35
>KOG4196 consensus bZIP transcription factor MafK [Transcription]
Probab=53.36 E-value=31 Score=30.89 Aligned_cols=29 Identities=28% Similarity=0.535 Sum_probs=13.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 018495 128 EIVMEIARLRQEQKSLDEELQGMNKRLEA 156 (355)
Q Consensus 128 ~L~~EIerLKreq~~L~qEL~~Lrqr~q~ 156 (355)
.|..||++|++++..+..|+..++.+.+.
T Consensus 85 ~L~qqv~~L~~e~s~~~~E~da~k~k~e~ 113 (135)
T KOG4196|consen 85 ELQQQVEKLKEENSRLRRELDAYKSKYEA 113 (135)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 44444444444444444444444444443
No 36
>PF02183 HALZ: Homeobox associated leucine zipper; InterPro: IPR003106 This region is a plant specific leucine zipper that is always found associated with a homeobox []. ; GO: 0003677 DNA binding, 0006355 regulation of transcription, DNA-dependent, 0005634 nucleus
Probab=53.25 E-value=41 Score=24.51 Aligned_cols=28 Identities=25% Similarity=0.501 Sum_probs=16.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 018495 127 EEIVMEIARLRQEQKSLDEELQGMNKRL 154 (355)
Q Consensus 127 ~~L~~EIerLKreq~~L~qEL~~Lrqr~ 154 (355)
..|..+.+.|+++++.|..||..|+..+
T Consensus 15 d~Lk~~~~~L~~E~~~L~aev~~L~~kl 42 (45)
T PF02183_consen 15 DSLKAEYDSLKKENEKLRAEVQELKEKL 42 (45)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhh
Confidence 4555556666666666666665555443
No 37
>PF03904 DUF334: Domain of unknown function (DUF334); InterPro: IPR005602 This is a family of proteins found in Staphylococcus aureus plasmid with no characterised function.
Probab=53.07 E-value=32 Score=33.36 Aligned_cols=41 Identities=17% Similarity=0.285 Sum_probs=36.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHh
Q 018495 131 MEIARLRQEQKSLDEELQGMNKRLEATERRPEQMMAFLYKV 171 (355)
Q Consensus 131 ~EIerLKreq~~L~qEL~~Lrqr~q~~EqrqqqMm~FLakv 171 (355)
+|++.|++++..+..+|..+.++++..+++++.+..-|...
T Consensus 43 ee~~eLk~qnkli~K~l~ei~~~qd~reK~~~~I~ssL~eT 83 (230)
T PF03904_consen 43 EEIQELKRQNKLIIKYLSEIEEKQDIREKNLKEIKSSLEET 83 (230)
T ss_pred HHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 58999999999999999999999999998888888877654
No 38
>PF15456 Uds1: Up-regulated During Septation
Probab=51.81 E-value=61 Score=28.37 Aligned_cols=45 Identities=22% Similarity=0.367 Sum_probs=37.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHhhcCCC
Q 018495 131 MEIARLRQEQKSLDEELQGMNKRLEATERRPEQMMAFLYKVVEDPD 176 (355)
Q Consensus 131 ~EIerLKreq~~L~qEL~~Lrqr~q~~EqrqqqMm~FLakvvqnP~ 176 (355)
+||+.||++...|...+..++.++. .|.++.....-|.++...+.
T Consensus 22 eEVe~LKkEl~~L~~R~~~lr~kl~-le~k~RdAa~sl~~l~~~~~ 66 (124)
T PF15456_consen 22 EEVEELKKELRSLDSRLEYLRRKLA-LESKIRDAAHSLSRLYSSSS 66 (124)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHhcCCCc
Confidence 7899999999999999999999987 77777777777777765443
No 39
>PF12325 TMF_TATA_bd: TATA element modulatory factor 1 TATA binding; InterPro: IPR022091 This is the C-terminal conserved coiled coil region of a family of TATA element modulatory factor 1 proteins conserved in eukaryotes []. The proteins bind to the TATA element of some RNA polymerase II promoters and repress their activity. by competing with the binding of TATA binding protein. TMF1_TATA_bd is the most conserved part of the TMFs []. TMFs are evolutionarily conserved golgins that bind Rab6, a ubiquitous ras-like GTP-binding Golgi protein, and contribute to Golgi organisation in animal [] and plant cells. The Rab6-binding domain appears to be the same region as this C-terminal family [].
Probab=51.63 E-value=57 Score=28.43 Aligned_cols=32 Identities=28% Similarity=0.331 Sum_probs=20.4
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 018495 126 DEEIVMEIARLRQEQKSLDEELQGMNKRLEAT 157 (355)
Q Consensus 126 ~~~L~~EIerLKreq~~L~qEL~~Lrqr~q~~ 157 (355)
...+..++.+|..++..+.+||++|-.+.+..
T Consensus 32 ~~~l~~el~~l~~~r~~l~~Eiv~l~~~~e~~ 63 (120)
T PF12325_consen 32 LASLQEELARLEAERDELREEIVKLMEENEEL 63 (120)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34566677777777777777777765544433
No 40
>PF11853 DUF3373: Protein of unknown function (DUF3373); InterPro: IPR021803 This family of proteins are functionally uncharacterised. This protein is found in bacteria. Proteins in this family are typically between 472 to 574 amino acids in length.
Probab=51.56 E-value=13 Score=39.49 Aligned_cols=36 Identities=14% Similarity=0.341 Sum_probs=27.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHH
Q 018495 128 EIVMEIARLRQEQKSLDEELQGMNKRLEATERRPEQM 164 (355)
Q Consensus 128 ~L~~EIerLKreq~~L~qEL~~Lrqr~q~~EqrqqqM 164 (355)
.+..+++.|| +.++|++||.+|++++..++++++++
T Consensus 22 a~~~~~~~~q-kie~L~kql~~Lk~q~~~l~~~v~k~ 57 (489)
T PF11853_consen 22 AMADDIDLLQ-KIEALKKQLEELKAQQDDLNDRVDKV 57 (489)
T ss_pred hhhhhhHHHH-HHHHHHHHHHHHHHhhcccccccchh
Confidence 5567787777 88888888888888887666665543
No 41
>PF10458 Val_tRNA-synt_C: Valyl tRNA synthetase tRNA binding arm; InterPro: IPR019499 The aminoacyl-tRNA synthetases (6.1.1. from EC) catalyse the attachment of an amino acid to its cognate transfer RNA molecule in a highly specific two-step reaction. These proteins differ widely in size and oligomeric state, and have limited sequence homology []. The 20 aminoacyl-tRNA synthetases are divided into two classes, I and II. Class I aminoacyl-tRNA synthetases contain a characteristic Rossman fold catalytic domain and are mostly monomeric []. Class II aminoacyl-tRNA synthetases share an anti-parallel beta-sheet fold flanked by alpha-helices [], and are mostly dimeric or multimeric, containing at least three conserved regions [, , ]. However, tRNA binding involves an alpha-helical structure that is conserved between class I and class II synthetases. In reactions catalysed by the class I aminoacyl-tRNA synthetases, the aminoacyl group is coupled to the 2'-hydroxyl of the tRNA, while, in class II reactions, the 3'-hydroxyl site is preferred. The synthetases specific for arginine, cysteine, glutamic acid, glutamine, isoleucine, leucine, methionine, tyrosine, tryptophan and valine belong to class I synthetases. The synthetases specific for alanine, asparagine, aspartic acid, glycine, histidine, lysine, phenylalanine, proline, serine, and threonine belong to class-II synthetases []. Based on their mode of binding to the tRNA acceptor stem, both classes of tRNA synthetases have been subdivided into three subclasses, designated 1a, 1b, 1c and 2a, 2b, 2c. This entry represents the C-terminal domain of Valyl-tRNA synthetase, which consists of two helices in a long alpha-hairpin. Valyl-tRNA synthetase (6.1.1.9 from EC) is an alpha monomer that belongs to class Ia.; GO: 0000166 nucleotide binding, 0004832 valine-tRNA ligase activity, 0005524 ATP binding, 0006438 valyl-tRNA aminoacylation, 0005737 cytoplasm; PDB: 1IVS_B 1GAX_B.
Probab=51.16 E-value=94 Score=23.81 Aligned_cols=26 Identities=35% Similarity=0.649 Sum_probs=16.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHH
Q 018495 129 IVMEIARLRQEQKSLDEELQGMNKRL 154 (355)
Q Consensus 129 L~~EIerLKreq~~L~qEL~~Lrqr~ 154 (355)
++.|+++|.++...+..++..+.+++
T Consensus 2 ~~~E~~rL~Kel~kl~~~i~~~~~kL 27 (66)
T PF10458_consen 2 VEAEIERLEKELEKLEKEIERLEKKL 27 (66)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 45666666666666666666555443
No 42
>PRK13729 conjugal transfer pilus assembly protein TraB; Provisional
Probab=51.13 E-value=47 Score=35.35 Aligned_cols=39 Identities=21% Similarity=0.249 Sum_probs=19.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHH
Q 018495 132 EIARLRQEQKSLDEELQGMNKRLEATERRPEQMMAFLYK 170 (355)
Q Consensus 132 EIerLKreq~~L~qEL~~Lrqr~q~~EqrqqqMm~FLak 170 (355)
..+.|+++...|.+|+..|.++.+.+|++++.+-+.+..
T Consensus 77 kasELEKqLaaLrqElq~~saq~~dle~KIkeLEaE~~~ 115 (475)
T PRK13729 77 TAAQMQKQYEEIRRELDVLNKQRGDDQRRIEKLGQDNAA 115 (475)
T ss_pred HHHHHHHHHHHHHHHHHHHhhhhhhHHHHHHHHHHHHHH
Confidence 344555555555555555555555555555544444443
No 43
>PF07795 DUF1635: Protein of unknown function (DUF1635); InterPro: IPR012862 The members of this family include sequences that are parts of hypothetical proteins expressed by plant species. The region in question is about 170 amino acids long.
Probab=50.63 E-value=65 Score=30.94 Aligned_cols=43 Identities=21% Similarity=0.281 Sum_probs=32.6
Q ss_pred HHHHHHHHHHHHHHHHHHH----HHHHHHHHhHHHHHHHHHHhhcCC
Q 018495 133 IARLRQEQKSLDEELQGMN----KRLEATERRPEQMMAFLYKVVEDP 175 (355)
Q Consensus 133 IerLKreq~~L~qEL~~Lr----qr~q~~EqrqqqMm~FLakvvqnP 175 (355)
++.||+......-||..++ ++++..++.+.++...|.++++..
T Consensus 3 ~EELRq~Ll~TTlELE~~k~~A~EElRk~eeqi~~L~~Ll~~a~~ER 49 (214)
T PF07795_consen 3 MEELRQKLLYTTLELEATKMEANEELRKREEQIAHLKDLLKKAYQER 49 (214)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 6788888888888888854 456666777778888888877543
No 44
>TIGR02338 gimC_beta prefoldin, beta subunit, archaeal. Chaperonins are cytosolic, ATP-dependent molecular chaperones, with a conserved toroidal architecture, that assist in the folding of nascent and/or denatured polypeptide chains. The group I chaperonin system consists of GroEL and GroES, and is found (usually) in bacteria and organelles of bacterial origin. The group II chaperonin system, called the thermosome in Archaea and TRiC or CCT in the Eukaryota, is structurally similar but only distantly related. Prefoldin, also called GimC, is a complex in Archaea and Eukaryota, that works with group II chaperonins. Members of this protein family are the archaeal clade of the beta class of prefoldin subunit. Closely related, but outside the scope of this family are the eukaryotic beta-class prefoldin subunits, Gim-1,3,4 and 6. The alpha class prefoldin subunits are more distantly related.
Probab=50.61 E-value=52 Score=27.58 Aligned_cols=39 Identities=13% Similarity=0.275 Sum_probs=26.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHH
Q 018495 127 EEIVMEIARLRQEQKSLDEELQGMNKRLEATERRPEQMM 165 (355)
Q Consensus 127 ~~L~~EIerLKreq~~L~qEL~~Lrqr~q~~EqrqqqMm 165 (355)
..+...++.|......|...+..+++++..++..+++|+
T Consensus 70 ~~l~~r~e~ie~~i~~lek~~~~l~~~l~e~q~~l~~~~ 108 (110)
T TIGR02338 70 QELKEKKETLELRVKTLQRQEERLREQLKELQEKIQEAL 108 (110)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 355666666666666677777777777777776666665
No 45
>PF04880 NUDE_C: NUDE protein, C-terminal conserved region; InterPro: IPR006964 This domain represents the C-terminal conserved region of NUDE proteins. Emericella nidulans (Aspergillus nidulans) NUDE, acts in the cytoplasmic dynein/dynactin pathway and is required for distribution of nuclei []. It is a homologue of the nuclear distribution protein RO11 of Neurospora crassa. NUDE interacts with the NUDF via an N-terminal coiled coil domain; this is the only domain which is absolutely required for NUDE function.; PDB: 2V66_B 2V71_B.
Probab=50.22 E-value=5.6 Score=36.61 Aligned_cols=19 Identities=37% Similarity=0.697 Sum_probs=2.0
Q ss_pred HHHHHHHHHHHHHHHHHHH
Q 018495 136 LRQEQKSLDEELQGMNKRL 154 (355)
Q Consensus 136 LKreq~~L~qEL~~Lrqr~ 154 (355)
|+.+.+.|+.|+.+||+.+
T Consensus 29 L~~~~QRLkDE~RDLKqEl 47 (166)
T PF04880_consen 29 LREEVQRLKDELRDLKQEL 47 (166)
T ss_dssp HHHCH--------------
T ss_pred HHHHHHHHHHHHHHHHHHH
Confidence 3334444444444444443
No 46
>PF07716 bZIP_2: Basic region leucine zipper; InterPro: IPR011700 The basic-leucine zipper (bZIP) transcription factors [, ] of eukaryotes are proteins that contain a basic region mediating sequence-specific DNA-binding, followed by a leucine zipper region (see IPR002158 from INTERPRO), which is required for dimerization.; GO: 0003700 sequence-specific DNA binding transcription factor activity, 0043565 sequence-specific DNA binding, 0046983 protein dimerization activity, 0006355 regulation of transcription, DNA-dependent; PDB: 1NWQ_A 1H89_B 1H88_A 1GTW_B 2E43_A 1IO4_A 1GU4_B 2E42_A 1H8A_B 1GU5_B ....
Probab=49.85 E-value=40 Score=24.81 Aligned_cols=26 Identities=27% Similarity=0.549 Sum_probs=16.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHH
Q 018495 127 EEIVMEIARLRQEQKSLDEELQGMNK 152 (355)
Q Consensus 127 ~~L~~EIerLKreq~~L~qEL~~Lrq 152 (355)
..|+.++..|..++..|.+++..|++
T Consensus 28 ~~le~~~~~L~~en~~L~~~i~~L~~ 53 (54)
T PF07716_consen 28 EELEQEVQELEEENEQLRQEIAQLER 53 (54)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 35566666666666666666665543
No 47
>PF11932 DUF3450: Protein of unknown function (DUF3450); InterPro: IPR016866 There is currently no experimental data for members of this group or their homologues, nor do they exhibit features indicative of any function. However, they are found in an operon along with components of a TonB transport system (typified by Vibrio cholerae TonB2 [], and are predicted to be localized to the periplasmic space. Caution: the low-complexity nature of these sequences produces spurious BLAST hits to chromosome segregation ATPases (which are much longer in length and contain canonical Walker motifs). Accordingly, some members are misidentified as such.
Probab=48.95 E-value=63 Score=30.70 Aligned_cols=9 Identities=33% Similarity=0.534 Sum_probs=5.3
Q ss_pred ccccccccC
Q 018495 197 GDKKRRLMI 205 (355)
Q Consensus 197 ~~KKRRl~~ 205 (355)
..|=||++.
T Consensus 148 ~ek~r~vle 156 (251)
T PF11932_consen 148 AEKFRRVLE 156 (251)
T ss_pred HHHHHHHHH
Confidence 445577763
No 48
>PRK00888 ftsB cell division protein FtsB; Reviewed
Probab=48.90 E-value=25 Score=29.71 Aligned_cols=26 Identities=12% Similarity=0.152 Sum_probs=10.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHH
Q 018495 129 IVMEIARLRQEQKSLDEELQGMNKRL 154 (355)
Q Consensus 129 L~~EIerLKreq~~L~qEL~~Lrqr~ 154 (355)
+..+++.+++++..|.++-..|+.++
T Consensus 32 l~~q~~~~~~e~~~l~~~n~~L~~eI 57 (105)
T PRK00888 32 VNDQVAAQQQTNAKLKARNDQLFAEI 57 (105)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33344444444444444333333333
No 49
>PF10473 CENP-F_leu_zip: Leucine-rich repeats of kinetochore protein Cenp-F/LEK1; InterPro: IPR019513 Cenp-F, a centromeric kinetochore, microtubule-binding protein consisting of two 1,600-amino acid-long coils, is essential for the full functioning of the mitotic checkpoint pathway [, ]. There are several leucine-rich repeats along the sequence of LEK1 that are considered to be zippers, though they do not appear to be binding DNA directly in this instance []. ; GO: 0008134 transcription factor binding, 0042803 protein homodimerization activity, 0045502 dynein binding
Probab=48.46 E-value=75 Score=28.50 Aligned_cols=29 Identities=24% Similarity=0.318 Sum_probs=12.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 018495 129 IVMEIARLRQEQKSLDEELQGMNKRLEAT 157 (355)
Q Consensus 129 L~~EIerLKreq~~L~qEL~~Lrqr~q~~ 157 (355)
|..++..|..+.+.|..||..++..-..+
T Consensus 57 L~~el~~lt~el~~L~~EL~~l~sEk~~L 85 (140)
T PF10473_consen 57 LEEELEELTSELNQLELELDTLRSEKENL 85 (140)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34444444444444444444444433333
No 50
>TIGR00219 mreC rod shape-determining protein MreC. MreC (murein formation C) is involved in the rod shape determination in E. coli, and more generally in cell shape determination of bacteria whether or not they are rod-shaped. Cells defective in MreC are round. Species with MreC include many of the Proteobacteria, Gram-positives, and spirochetes.
Probab=46.84 E-value=72 Score=31.32 Aligned_cols=44 Identities=20% Similarity=0.269 Sum_probs=29.3
Q ss_pred ChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHH
Q 018495 125 DDEEIVMEIARLRQEQKSLDEELQGMNKRLEATERRPEQMMAFL 168 (355)
Q Consensus 125 ~~~~L~~EIerLKreq~~L~qEL~~Lrqr~q~~EqrqqqMm~FL 168 (355)
+...+.+|.++||+++..|.+++..+.+.++.--+++++|+.+-
T Consensus 67 ~~~~l~~EN~~Lr~e~~~l~~~~~~~~~~l~~EN~rLr~LL~~~ 110 (283)
T TIGR00219 67 DVNNLEYENYKLRQELLKKNQQLEILTQNLKQENVRLRELLNSP 110 (283)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCc
Confidence 34577888888888888887777766554544444555555543
No 51
>PF07407 Seadorna_VP6: Seadornavirus VP6 protein; InterPro: IPR009982 This family consists of several VP6 proteins from the Banna virus as well as a related protein VP5 from the Kadipiro virus. Members of this family are typically of around 420 residues in length. The function of this family is unknown.
Probab=46.34 E-value=54 Score=33.69 Aligned_cols=29 Identities=21% Similarity=0.375 Sum_probs=23.8
Q ss_pred ChHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 018495 125 DDEEIVMEIARLRQEQKSLDEELQGMNKR 153 (355)
Q Consensus 125 ~~~~L~~EIerLKreq~~L~qEL~~Lrqr 153 (355)
+...|.+|.++||+|++.|..||.+|+..
T Consensus 33 e~~aLr~EN~~LKkEN~~Lk~eVerLE~e 61 (420)
T PF07407_consen 33 ENFALRMENHSLKKENNDLKIEVERLENE 61 (420)
T ss_pred hhhhHHHHhHHHHHHHHHHHHHHHHHHHH
Confidence 46688889999999999999998887653
No 52
>PF12718 Tropomyosin_1: Tropomyosin like; InterPro: IPR000533 Tropomyosins [], are a family of closely related proteins present in muscle and non-muscle cells. In striated muscle, tropomyosin mediate the interactions between the troponin complex and actin so as to regulate muscle contraction []. The role of tropomyosin in smooth muscle and non-muscle tissues is not clear. Tropomyosin is an alpha-helical protein that forms a coiled-coil structure of 2 parallel helices containing 2 sets of 7 alternating actin binding sites []. There are multiple cell-specific isoforms, created by differential splicing of the messenger RNA from one gene, but the proportions of the isoforms vary between different cell types. Muscle isoforms of tropomyosin are characterised by having 284 amino acid residues and a highly conserved N-terminal region, whereas non-muscle forms are generally smaller and are heterogeneous in their N-terminal region. This entry represents tropomyosin (Tmp) 1, 2 and 3. Within the yeast Tmp1 and Tmp2, biochemical and sequence analyses indicate that Tpm2 spans four actin monomers along a filament, whereas Tpm1 spans five. Despite its shorter length, Tpm2 can compete with Tpm1 for binding to F-actin. Over-expression of Tpm2 in vivo alters the axial budding of haploids to a bipolar pattern, and this can be partially suppressed by co-over-expression of Tpm1. This suggests distinct functions for the two tropomyosins, and indicates that the ratio between them is important for correct morphogenesis [].
Probab=45.87 E-value=93 Score=27.63 Aligned_cols=46 Identities=20% Similarity=0.344 Sum_probs=31.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHhh
Q 018495 127 EEIVMEIARLRQEQKSLDEELQGMNKRLEATERRPEQMMAFLYKVV 172 (355)
Q Consensus 127 ~~L~~EIerLKreq~~L~qEL~~Lrqr~q~~EqrqqqMm~FLakvv 172 (355)
..+..++..|..+...+..||..|..++..+|..+.++-..|..+-
T Consensus 17 e~~e~~~K~le~~~~~~E~EI~sL~~K~~~lE~eld~~~~~l~~~k 62 (143)
T PF12718_consen 17 EELEAKVKQLEQENEQKEQEITSLQKKNQQLEEELDKLEEQLKEAK 62 (143)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3566667777777777777777777777777666666666665543
No 53
>PF07334 IFP_35_N: Interferon-induced 35 kDa protein (IFP 35) N-terminus; InterPro: IPR009938 This entry represents the N terminus of interferon-induced 35 kDa protein (IFP 35) (approximately 80 residues long), which contains a leucine zipper motif in an alpha helical configuration []. This group of proteins also includes N-myc-interactor (Nmi), a homologous interferon-induced protein.
Probab=45.33 E-value=44 Score=27.25 Aligned_cols=24 Identities=46% Similarity=0.533 Sum_probs=12.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHH
Q 018495 128 EIVMEIARLRQEQKSLDEELQGMN 151 (355)
Q Consensus 128 ~L~~EIerLKreq~~L~qEL~~Lr 151 (355)
+|..|..+||++.+.|..||+.++
T Consensus 4 ei~eEn~~Lk~eiqkle~ELq~~~ 27 (76)
T PF07334_consen 4 EIQEENARLKEEIQKLEAELQQNK 27 (76)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHH
Confidence 344455555555555555554433
No 54
>PRK13922 rod shape-determining protein MreC; Provisional
Probab=45.30 E-value=43 Score=32.02 Aligned_cols=27 Identities=30% Similarity=0.490 Sum_probs=14.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 018495 131 MEIARLRQEQKSLDEELQGMNKRLEAT 157 (355)
Q Consensus 131 ~EIerLKreq~~L~qEL~~Lrqr~q~~ 157 (355)
..+..|++|++.|++|+..|+.++...
T Consensus 69 ~~~~~l~~en~~L~~e~~~l~~~~~~~ 95 (276)
T PRK13922 69 ASLFDLREENEELKKELLELESRLQEL 95 (276)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 345555555555555555555544433
No 55
>PF10224 DUF2205: Predicted coiled-coil protein (DUF2205); InterPro: IPR019357 This entry represents a highly conserved 100 residue region which is likely to have a coiled-coil structure. The exact function is unknown.
Probab=44.84 E-value=86 Score=25.67 Aligned_cols=44 Identities=23% Similarity=0.251 Sum_probs=25.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHhhcCCCcHHHHHh
Q 018495 140 QKSLDEELQGMNKRLEATERRPEQMMAFLYKVVEDPDLLPRIIM 183 (355)
Q Consensus 140 q~~L~qEL~~Lrqr~q~~EqrqqqMm~FLakvvqnP~fl~~li~ 183 (355)
+..|.+|+..|+..++.+-.++..+-.=-.++-+.+.+|+..|.
T Consensus 18 k~~Li~ei~~LQ~sL~~L~~Rve~Vk~E~~kL~~EN~~Lq~YI~ 61 (80)
T PF10224_consen 18 KEELIQEILELQDSLEALSDRVEEVKEENEKLESENEYLQQYIG 61 (80)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 55566666666665555555555555555566666777665543
No 56
>PF11414 Suppressor_APC: Adenomatous polyposis coli tumour suppressor protein; PDB: 1M5I_A.
Probab=44.67 E-value=43 Score=27.57 Aligned_cols=36 Identities=19% Similarity=0.368 Sum_probs=25.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH-------HHHHHHHhHHH
Q 018495 128 EIVMEIARLRQEQKSLDEELQGMNK-------RLEATERRPEQ 163 (355)
Q Consensus 128 ~L~~EIerLKreq~~L~qEL~~Lrq-------r~q~~Eqrqqq 163 (355)
.+...++.|.+++..|+++|..+.+ +++..++++..
T Consensus 4 ~~lk~mkeLEqEkd~LLqgLe~~Er~r~Wy~~qL~~vq~rq~~ 46 (84)
T PF11414_consen 4 NMLKRMKELEQEKDVLLQGLEMEERERDWYQQQLQSVQERQRH 46 (84)
T ss_dssp ---HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTT
T ss_pred hHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4567889999999999999988654 55665555543
No 57
>PF12329 TMF_DNA_bd: TATA element modulatory factor 1 DNA binding; InterPro: IPR022092 This is the middle region of a family of TATA element modulatory factor 1 proteins conserved in eukaryotes that contains at its N-terminal section a number of leucine zippers that could potentially form coiled coil structures. The whole proteins bind to the TATA element of some RNA polymerase II promoters and repress their activity. by competing with the binding of TATA binding protein. TMFs are evolutionarily conserved golgins that bind Rab6, a ubiquitous ras-like GTP-binding Golgi protein, and contribute to Golgi organisation in animal [] and plant [] cells.
Probab=44.12 E-value=94 Score=24.69 Aligned_cols=38 Identities=29% Similarity=0.474 Sum_probs=19.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHH
Q 018495 131 MEIARLRQEQKSLDEELQGMNKRLEATERRPEQMMAFL 168 (355)
Q Consensus 131 ~EIerLKreq~~L~qEL~~Lrqr~q~~EqrqqqMm~FL 168 (355)
..|..|+.....+..++..++.++...+..+..+-.+|
T Consensus 33 ~~IKKLr~~~~e~e~~~~~l~~~~~~~e~~~~~l~~~l 70 (74)
T PF12329_consen 33 NTIKKLRAKIKELEKQIKELKKKLEELEKELESLEERL 70 (74)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 34555555555555555555555555555444444443
No 58
>PRK09039 hypothetical protein; Validated
Probab=44.12 E-value=72 Score=32.18 Aligned_cols=46 Identities=22% Similarity=0.268 Sum_probs=34.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHhh
Q 018495 127 EEIVMEIARLRQEQKSLDEELQGMNKRLEATERRPEQMMAFLYKVV 172 (355)
Q Consensus 127 ~~L~~EIerLKreq~~L~qEL~~Lrqr~q~~EqrqqqMm~FLakvv 172 (355)
..|..||+.||.+...|..+|...+++....+.++..+-.-|..++
T Consensus 140 ~~L~~qI~aLr~Qla~le~~L~~ae~~~~~~~~~i~~L~~~L~~a~ 185 (343)
T PRK09039 140 ELLNQQIAALRRQLAALEAALDASEKRDRESQAKIADLGRRLNVAL 185 (343)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4566777788888888888887777777777777777777777666
No 59
>PF05529 Bap31: B-cell receptor-associated protein 31-like ; InterPro: IPR008417 Bap31 is a polytopic integral protein of the endoplasmic reticulum membrane and a substrate of caspase-8. Bap31 is cleaved within its cytosolic domain, generating pro-apoptotic p20 Bap31 [].; GO: 0006886 intracellular protein transport, 0005783 endoplasmic reticulum, 0016021 integral to membrane
Probab=43.90 E-value=44 Score=30.38 Aligned_cols=34 Identities=21% Similarity=0.491 Sum_probs=25.3
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 018495 126 DEEIVMEIARLRQEQKSLDEELQGMNKRLEATER 159 (355)
Q Consensus 126 ~~~L~~EIerLKreq~~L~qEL~~Lrqr~q~~Eq 159 (355)
...+..|++.||++......|+..|++|.+++++
T Consensus 156 ~~~~~~ei~~lk~el~~~~~~~~~LkkQ~~~l~~ 189 (192)
T PF05529_consen 156 NKKLSEEIEKLKKELEKKEKEIEALKKQSEGLQK 189 (192)
T ss_pred hhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 4456678888888888888888888888776654
No 60
>PRK14127 cell division protein GpsB; Provisional
Probab=43.83 E-value=64 Score=27.81 Aligned_cols=32 Identities=9% Similarity=0.350 Sum_probs=16.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 018495 128 EIVMEIARLRQEQKSLDEELQGMNKRLEATER 159 (355)
Q Consensus 128 ~L~~EIerLKreq~~L~qEL~~Lrqr~q~~Eq 159 (355)
.+..+++.|.+++..|..|+.+|++++...+.
T Consensus 34 ~V~~dye~l~~e~~~Lk~e~~~l~~~l~e~~~ 65 (109)
T PRK14127 34 DVIKDYEAFQKEIEELQQENARLKAQVDELTK 65 (109)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33444555555555555555555555554444
No 61
>PRK10884 SH3 domain-containing protein; Provisional
Probab=43.76 E-value=65 Score=30.45 Aligned_cols=29 Identities=7% Similarity=0.074 Sum_probs=18.2
Q ss_pred cCccccC--CCCceEecccccccccccccce
Q 018495 71 YGFRKVD--PDKWEFANEWFLRGQKHLLKNI 99 (355)
Q Consensus 71 YGFrKv~--pd~~eF~He~F~RG~~~LL~~I 99 (355)
.||.+|. .++--|.|..++...|.+...+
T Consensus 65 ~~w~~Vr~~~G~~GWV~~~~Ls~~p~~~~rl 95 (206)
T PRK10884 65 TNYAQIRDSKGRTAWIPLKQLSTTPSLRTRV 95 (206)
T ss_pred CCEEEEEeCCCCEEeEEHHHhcCCccHHHHH
Confidence 3677774 3445677888877776654433
No 62
>PRK10803 tol-pal system protein YbgF; Provisional
Probab=42.97 E-value=64 Score=31.26 Aligned_cols=38 Identities=8% Similarity=0.233 Sum_probs=23.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHhh
Q 018495 135 RLRQEQKSLDEELQGMNKRLEATERRPEQMMAFLYKVV 172 (355)
Q Consensus 135 rLKreq~~L~qEL~~Lrqr~q~~EqrqqqMm~FLakvv 172 (355)
.|.++.+.|.+||.+||-+++.+...+++|..--..+.
T Consensus 58 ~l~~ql~~lq~ev~~LrG~~E~~~~~l~~~~~rq~~~y 95 (263)
T PRK10803 58 QLQQQLSDNQSDIDSLRGQIQENQYQLNQVVERQKQIY 95 (263)
T ss_pred HHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHH
Confidence 45566666666666677666666666666655444433
No 63
>PF04728 LPP: Lipoprotein leucine-zipper; InterPro: IPR006817 This repeating sequence, NAKVDQLSNDV, is found in the enterobacterial outer membrane lipoprotein LPP. The outer membrane lipoprotein is the most abundant protein in an Escherichia coli cell. The messenger RNA for the lipoprotein of the E. coli outer membrane codes for a putative precursor, prolipoprotein, which has 20 additional amino acid residues extending from the amino terminus of the lipoprotein.; GO: 0019867 outer membrane; PDB: 1JCC_A 2GUV_C 2GUS_A 1JCD_A 1KFM_A 1T8Z_D 1KFN_A 1EQ7_A.
Probab=42.68 E-value=1.4e+02 Score=22.99 Aligned_cols=24 Identities=8% Similarity=0.332 Sum_probs=10.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHH
Q 018495 129 IVMEIARLRQEQKSLDEELQGMNK 152 (355)
Q Consensus 129 L~~EIerLKreq~~L~qEL~~Lrq 152 (355)
|..+|..|+.+...|..++..|+.
T Consensus 8 Ls~dVq~L~~kvdqLs~dv~~lr~ 31 (56)
T PF04728_consen 8 LSSDVQTLNSKVDQLSSDVNALRA 31 (56)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHH
Confidence 344444444444444444444443
No 64
>PRK09343 prefoldin subunit beta; Provisional
Probab=42.42 E-value=96 Score=26.68 Aligned_cols=39 Identities=13% Similarity=0.313 Sum_probs=23.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHH
Q 018495 128 EIVMEIARLRQEQKSLDEELQGMNKRLEATERRPEQMMA 166 (355)
Q Consensus 128 ~L~~EIerLKreq~~L~qEL~~Lrqr~q~~EqrqqqMm~ 166 (355)
.+..+++.+..+...|......+++++..++..+++|++
T Consensus 75 ~l~~r~E~ie~~ik~lekq~~~l~~~l~e~q~~l~~ll~ 113 (121)
T PRK09343 75 ELKERKELLELRSRTLEKQEKKLREKLKELQAKINEMLS 113 (121)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 555556666666666666666666666666666655554
No 65
>PRK00888 ftsB cell division protein FtsB; Reviewed
Probab=41.93 E-value=65 Score=27.23 Aligned_cols=31 Identities=6% Similarity=0.064 Sum_probs=17.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhHH
Q 018495 132 EIARLRQEQKSLDEELQGMNKRLEATERRPE 162 (355)
Q Consensus 132 EIerLKreq~~L~qEL~~Lrqr~q~~Eqrqq 162 (355)
.+..|+++...+.+|+.+++++.+.++..++
T Consensus 28 ~~~~l~~q~~~~~~e~~~l~~~n~~L~~eI~ 58 (105)
T PRK00888 28 DYWRVNDQVAAQQQTNAKLKARNDQLFAEID 58 (105)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4555556666666666666655555554443
No 66
>PF11382 DUF3186: Protein of unknown function (DUF3186); InterPro: IPR021522 This bacterial family of proteins has no known function.
Probab=41.88 E-value=71 Score=31.68 Aligned_cols=42 Identities=21% Similarity=0.349 Sum_probs=34.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHH
Q 018495 127 EEIVMEIARLRQEQKSLDEELQGMNKRLEATERRPEQMMAFL 168 (355)
Q Consensus 127 ~~L~~EIerLKreq~~L~qEL~~Lrqr~q~~EqrqqqMm~FL 168 (355)
..|+.+++.|+++++.|..|+..++.++...++-.+.+..-|
T Consensus 35 ~~l~~~~~~lr~e~~~l~~~~~~~~~~~~~~d~f~~~~~~~l 76 (308)
T PF11382_consen 35 DSLEDQFDSLREENDELRAELDALQAQLNAADQFIAAVAPRL 76 (308)
T ss_pred hhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 467788999999999999999999999888777766665554
No 67
>PF04102 SlyX: SlyX; InterPro: IPR007236 The SlyX protein has no known function. It is short, less than 80 amino acids, and its gene is found close to the slyD gene. The SlyX protein has a conserved PPH(Y/W) motif at its C terminus. The protein may be a coiled-coil structure.; PDB: 3EFG_A.
Probab=41.48 E-value=1.2e+02 Score=23.63 Aligned_cols=43 Identities=12% Similarity=0.238 Sum_probs=20.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHH
Q 018495 128 EIVMEIARLRQEQKSLDEELQGMNKRLEATERRPEQMMAFLYK 170 (355)
Q Consensus 128 ~L~~EIerLKreq~~L~qEL~~Lrqr~q~~EqrqqqMm~FLak 170 (355)
.|+..+.-+......|...|.+..+++..+++.++.|..-|..
T Consensus 8 ~LE~~la~qe~~ie~Ln~~v~~Qq~~I~~L~~~l~~L~~rl~~ 50 (69)
T PF04102_consen 8 ELEIKLAFQEDTIEELNDVVTEQQRQIDRLQRQLRLLRERLRE 50 (69)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHT---
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3444444444445555555555555555555555554444444
No 68
>PF13815 Dzip-like_N: Iguana/Dzip1-like DAZ-interacting protein N-terminal
Probab=41.38 E-value=93 Score=26.48 Aligned_cols=31 Identities=13% Similarity=0.440 Sum_probs=13.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 018495 129 IVMEIARLRQEQKSLDEELQGMNKRLEATER 159 (355)
Q Consensus 129 L~~EIerLKreq~~L~qEL~~Lrqr~q~~Eq 159 (355)
|...++.|+.+...+..+..++++.++.++.
T Consensus 78 L~~~~~~l~~~~~~~~~~~~~l~~~~~~~~~ 108 (118)
T PF13815_consen 78 LSSQLEQLEERLQELQQEIEKLKQKLKKQKE 108 (118)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3344444444444444444444444444333
No 69
>PF08826 DMPK_coil: DMPK coiled coil domain like; InterPro: IPR014930 This domain is found in the myotonic dystrophy protein kinase (DMPK) and adopts a coiled coil structure. It plays a role in dimerisation []. ; GO: 0004674 protein serine/threonine kinase activity, 0005524 ATP binding, 0006468 protein phosphorylation; PDB: 1WT6_D.
Probab=40.74 E-value=1.3e+02 Score=23.33 Aligned_cols=38 Identities=21% Similarity=0.381 Sum_probs=24.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHH
Q 018495 127 EEIVMEIARLRQEQKSLDEELQGMNKRLEATERRPEQM 164 (355)
Q Consensus 127 ~~L~~EIerLKreq~~L~qEL~~Lrqr~q~~EqrqqqM 164 (355)
..+..|+.+.|..+..+...|....++...++..+..|
T Consensus 14 Q~~~eEL~kvk~~n~~~e~kLqeaE~rn~eL~~ei~~L 51 (61)
T PF08826_consen 14 QAIQEELTKVKSANLAFESKLQEAEKRNRELEQEIERL 51 (61)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 35666777777777777777777666666665555443
No 70
>PF07989 Microtub_assoc: Microtubule associated; InterPro: IPR012943 Proteins with this domain associate with the spindle body during cell division [].
Probab=40.52 E-value=1e+02 Score=24.76 Aligned_cols=36 Identities=36% Similarity=0.413 Sum_probs=23.9
Q ss_pred ChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 018495 125 DDEEIVMEIARLRQEQKSLDEELQGMNKRLEATERR 160 (355)
Q Consensus 125 ~~~~L~~EIerLKreq~~L~qEL~~Lrqr~q~~Eqr 160 (355)
+...+..+.-.||-+...|..||..+++.+..+++.
T Consensus 37 ~~~~~~keNieLKve~~~L~~el~~~~~~l~~a~~~ 72 (75)
T PF07989_consen 37 SIEELLKENIELKVEVESLKRELQEKKKLLKEAEKA 72 (75)
T ss_pred cHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 445566666667777777777777777776666544
No 71
>PF15361 RIC3: Resistance to inhibitors of cholinesterase homologue 3
Probab=40.47 E-value=32 Score=31.08 Aligned_cols=25 Identities=40% Similarity=0.533 Sum_probs=21.8
Q ss_pred HHHHHHHHHHHHHHHHHHHhHHHHH
Q 018495 141 KSLDEELQGMNKRLEATERRPEQMM 165 (355)
Q Consensus 141 ~~L~qEL~~Lrqr~q~~EqrqqqMm 165 (355)
..-..||..|++|+.++|+.+++|+
T Consensus 127 ~~~~~eL~qLq~rL~qTE~~m~kil 151 (152)
T PF15361_consen 127 KITDYELAQLQERLAQTERAMEKIL 151 (152)
T ss_pred cchHHHHHHHHHHHHHHHHHHHHHh
Confidence 3557889999999999999999886
No 72
>PF05565 Sipho_Gp157: Siphovirus Gp157; InterPro: IPR008840 This family contains both viral and bacterial proteins which are related to the Gp157 protein of the Streptococcus thermophilus SFi bacteriophage. It is thought that bacteria possessing the gene coding for this protein have an increased resistance to the bacteriophage [].
Probab=40.28 E-value=1.1e+02 Score=27.51 Aligned_cols=46 Identities=20% Similarity=0.426 Sum_probs=38.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHhhc
Q 018495 128 EIVMEIARLRQEQKSLDEELQGMNKRLEATERRPEQMMAFLYKVVE 173 (355)
Q Consensus 128 ~L~~EIerLKreq~~L~qEL~~Lrqr~q~~EqrqqqMm~FLakvvq 173 (355)
++..-|..|.-+-.++..|..+|..+.+..+.+.+.|-.+|...|.
T Consensus 44 ~~~~~Ik~~ea~~e~~k~E~krL~~rkk~~e~~~~~Lk~yL~~~m~ 89 (162)
T PF05565_consen 44 NIAKVIKNLEADIEAIKAEIKRLQERKKSIENRIDRLKEYLLDAME 89 (162)
T ss_pred HHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4444566777788889999999999999999999999999888774
No 73
>PF07676 PD40: WD40-like Beta Propeller Repeat; InterPro: IPR011659 WD-40 repeats (also known as WD or beta-transducin repeats) are short ~40 amino acid motifs, often terminating in a Trp-Asp (W-D) dipeptide. WD40 repeats usually assume a 7-8 bladed beta-propeller fold, but proteins have been found with 4 to 16 repeated units, which also form a circularised beta-propeller structure. WD-repeat proteins are a large family found in all eukaryotes and are implicated in a variety of functions ranging from signal transduction and transcription regulation to cell cycle control and apoptosis. Repeated WD40 motifs act as a site for protein-protein interaction, and proteins containing WD40 repeats are known to serve as platforms for the assembly of protein complexes or mediators of transient interplay among other proteins. The specificity of the proteins is determined by the sequences outside the repeats themselves. Examples of such complexes are G proteins (beta subunit is a beta-propeller), TAFII transcription factor, and E3 ubiquitin ligase [, ]. In Arabidopsis spp., several WD40-containing proteins act as key regulators of plant-specific developmental events. This region appears to be related to the IPR001680 from INTERPRO repeat. This model is likely to miss copies within a sequence.; PDB: 2HQS_D 1C5K_A 2IVZ_A 2W8B_D 3IAX_A 1CRZ_A 1N6F_D 1N6D_C 1N6E_C 1K32_A ....
Probab=39.97 E-value=11 Score=25.09 Aligned_cols=23 Identities=17% Similarity=0.414 Sum_probs=16.3
Q ss_pred hhcCCCCCCcEEEcCCCCeEEEe
Q 018495 20 MVNDPTTDSLISWGKANNSFIVV 42 (355)
Q Consensus 20 mLed~~~~~iIsWs~~G~sFvV~ 42 (355)
++..+..+....|++||+.++..
T Consensus 4 ~t~~~~~~~~p~~SpDGk~i~f~ 26 (39)
T PF07676_consen 4 LTNSPGDDGSPAWSPDGKYIYFT 26 (39)
T ss_dssp ES-SSSSEEEEEE-TTSSEEEEE
T ss_pred cccCCccccCEEEecCCCEEEEE
Confidence 45666667778999999987765
No 74
>PF10805 DUF2730: Protein of unknown function (DUF2730); InterPro: IPR020269 This entry represents a family of various hypothetical proteins. The proteins, which include HI1498 and Gp25, from phage Mu, are currently uncharacterised.
Probab=39.62 E-value=83 Score=26.49 Aligned_cols=37 Identities=19% Similarity=0.327 Sum_probs=23.8
Q ss_pred HHHHHHHHH--HHHHHHHHHHHHHHHHHHHHHHHhHHHH
Q 018495 128 EIVMEIARL--RQEQKSLDEELQGMNKRLEATERRPEQM 164 (355)
Q Consensus 128 ~L~~EIerL--Kreq~~L~qEL~~Lrqr~q~~EqrqqqM 164 (355)
.++.+++.| +.+...|..+|.+|+-++..++.+++.|
T Consensus 53 ~lE~~l~~LPt~~dv~~L~l~l~el~G~~~~l~~~l~~v 91 (106)
T PF10805_consen 53 ALETKLEHLPTRDDVHDLQLELAELRGELKELSARLQGV 91 (106)
T ss_pred HHHHHHHhCCCHHHHHHHHHHHHHHHhHHHHHHHHHHHH
Confidence 555666666 6666666666666666666666666555
No 75
>PF08537 NBP1: Fungal Nap binding protein NBP1; InterPro: IPR013743 NBP1 is a nuclear protein which has been shown in Saccharomyces cerevisiae (Bakers yeast) to be essential for the G2/M transition of the cell cycle.
Probab=39.44 E-value=1.9e+02 Score=29.51 Aligned_cols=47 Identities=21% Similarity=0.362 Sum_probs=30.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHhhcCCCcH
Q 018495 128 EIVMEIARLRQEQKSLDEELQGMNKRLEATERRPEQMMAFLYKVVEDPDLL 178 (355)
Q Consensus 128 ~L~~EIerLKreq~~L~qEL~~Lrqr~q~~EqrqqqMm~FLakvvqnP~fl 178 (355)
.|..+|+.|+++...+..||+.+++++.=.+.+. ..|..++.|-.+-
T Consensus 179 LLqkk~~~l~~~l~~~~~eL~~~~k~L~faqekn----~LlqslLddaniD 225 (323)
T PF08537_consen 179 LLQKKIDELEERLNDLEKELEITKKDLKFAQEKN----ALLQSLLDDANID 225 (323)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH----HHHHHHHhhhccc
Confidence 4456777888888888888877777776555444 4455555444443
No 76
>PRK11637 AmiB activator; Provisional
Probab=39.37 E-value=98 Score=31.67 Aligned_cols=43 Identities=14% Similarity=0.268 Sum_probs=23.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHH
Q 018495 128 EIVMEIARLRQEQKSLDEELQGMNKRLEATERRPEQMMAFLYK 170 (355)
Q Consensus 128 ~L~~EIerLKreq~~L~qEL~~Lrqr~q~~EqrqqqMm~FLak 170 (355)
.+..+|+.++++...|..+|..+++++...+..+.+++..+++
T Consensus 93 ~~~~~i~~~~~ei~~l~~eI~~~q~~l~~~~~~l~~rlra~Y~ 135 (428)
T PRK11637 93 ETQNTLNQLNKQIDELNASIAKLEQQQAAQERLLAAQLDAAFR 135 (428)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3344555555555555555555555555555555555555555
No 77
>PF13942 Lipoprotein_20: YfhG lipoprotein
Probab=38.69 E-value=79 Score=29.62 Aligned_cols=26 Identities=35% Similarity=0.500 Sum_probs=12.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHH
Q 018495 130 VMEIARLRQEQKSLDEELQGMNKRLE 155 (355)
Q Consensus 130 ~~EIerLKreq~~L~qEL~~Lrqr~q 155 (355)
+.+++.|++++..|..||..-..+++
T Consensus 129 D~~lD~Lr~qq~~Lq~qL~~T~RKLE 154 (179)
T PF13942_consen 129 DSELDALRQQQQRLQYQLDTTTRKLE 154 (179)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 34455555555555555544444443
No 78
>TIGR02894 DNA_bind_RsfA transcription factor, RsfA family. In a subset of endospore-forming members of the Firmcutes, members of this protein family are found, several to a genome. Two very strongly conserved sequences regions are separated by a highly variable linker region. Much of the linker region was excised from the seed alignment for this model. A characterized member is the prespore-specific transcription RsfA from Bacillus subtilis, previously called YwfN, which is controlled by sigma factor F and seems to fine-tune expression of some genes in the sigma-F regulon. A paralog in Bacillus subtilis is designated YlbO.
Probab=38.52 E-value=79 Score=29.18 Aligned_cols=43 Identities=26% Similarity=0.315 Sum_probs=23.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHhhcCC
Q 018495 133 IARLRQEQKSLDEELQGMNKRLEATERRPEQMMAFLYKVVEDP 175 (355)
Q Consensus 133 IerLKreq~~L~qEL~~Lrqr~q~~EqrqqqMm~FLakvvqnP 175 (355)
...|+.++..|..|+..|+++++.++...+.+..-+..+-.|-
T Consensus 99 ~~~~~~e~~~l~~e~~~l~~~~e~Le~e~~~L~~~~~~~~eDY 141 (161)
T TIGR02894 99 DQALQKENERLKNQNESLQKRNEELEKELEKLRQRLSTIEEDY 141 (161)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3344555566666666666666666655555555554444444
No 79
>smart00338 BRLZ basic region leucin zipper.
Probab=37.99 E-value=1.5e+02 Score=22.36 Aligned_cols=37 Identities=24% Similarity=0.390 Sum_probs=24.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHH
Q 018495 130 VMEIARLRQEQKSLDEELQGMNKRLEATERRPEQMMA 166 (355)
Q Consensus 130 ~~EIerLKreq~~L~qEL~~Lrqr~q~~EqrqqqMm~ 166 (355)
...+..|..+...|..|...|+.++..++..+..|-.
T Consensus 25 k~~~~~Le~~~~~L~~en~~L~~~~~~l~~e~~~lk~ 61 (65)
T smart00338 25 KAEIEELERKVEQLEAENERLKKEIERLRRELEKLKS 61 (65)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3566667777777777777777777766666655543
No 80
>PF05377 FlaC_arch: Flagella accessory protein C (FlaC); InterPro: IPR008039 Although archaeal flagella appear superficially similar to those of bacteria, they are quite distinct []. In several archaea, the flagellin genes are followed immediately by the flagellar accessory genes flaCDEFGHIJ. The gene products may have a role in translocation, secretion, or assembly of the flagellum. FlaC is a protein whose exact role is unknown but it has been shown to be membrane-associated (by immuno-blotting fractionated cells) [].
Probab=37.94 E-value=96 Score=23.84 Aligned_cols=32 Identities=13% Similarity=0.291 Sum_probs=25.4
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 018495 126 DEEIVMEIARLRQEQKSLDEELQGMNKRLEAT 157 (355)
Q Consensus 126 ~~~L~~EIerLKreq~~L~qEL~~Lrqr~q~~ 157 (355)
-..+...|..+|++++.|..++.++.+.++..
T Consensus 9 ~~~~~~~i~tvk~en~~i~~~ve~i~envk~l 40 (55)
T PF05377_consen 9 LPRIESSINTVKKENEEISESVEKIEENVKDL 40 (55)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 44677788888888888888888888877554
No 81
>PF04201 TPD52: Tumour protein D52 family; InterPro: IPR007327 The hD52 gene was originally identified through its elevated expression level in human breast carcinoma. Cloning of D52 homologues from other species has indicated that D52 may play roles in calcium-mediated signal transduction and cell proliferation. Two human homologues of hD52, hD53 and hD54, have also been identified, demonstrating the existence of a novel gene/protein family []. These proteins have an N-terminal coiled-coil that allows members to form homo- and heterodimers with each other [].
Probab=37.90 E-value=1e+02 Score=28.42 Aligned_cols=32 Identities=34% Similarity=0.411 Sum_probs=20.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhH
Q 018495 130 VMEIARLRQEQKSLDEELQGMNKRLEATERRP 161 (355)
Q Consensus 130 ~~EIerLKreq~~L~qEL~~Lrqr~q~~Eqrq 161 (355)
+.|-+.|+++...++.||+.|||-+-.-|+++
T Consensus 28 EeE~eeLr~EL~KvEeEI~TLrqvL~aKer~~ 59 (162)
T PF04201_consen 28 EEEREELRSELAKVEEEIQTLRQVLAAKERHC 59 (162)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhH
Confidence 35566777777777777777776555444443
No 82
>PF02344 Myc-LZ: Myc leucine zipper domain; InterPro: IPR003327 This family consists of the leucine zipper dimerisation domain found in both cellular c-Myc proto-oncogenes and viral v-Myc oncogenes. Dimerisation via the leucine zipper motif with other basic helix-loop-helix-leucine zipper (b/HLH/lz) proteins is required for efficient DNA binding []. The Myc-Max dimer is a transactivating complex activating expression of growth related genes promoting cell proliferation. The dimerisation is facilitated via interdigitating leucine residues every 7th position of the alpha helix. Like charge repulsion of adjacent residues in this region preturbs the formation of homodimers with heterodimers being promoted by opposing charge attractions. It has been demonstrated that in transgenic mice the balance between oncogene-induced proliferation and apoptosis in a given tissue can be a critical determinant in the initiation and maintenance of the tumor [].; GO: 0003700 sequence-specific DNA binding transcription factor activity, 0006355 regulation of transcription, DNA-dependent, 0005634 nucleus; PDB: 1NKP_D 1A93_A 2A93_A.
Probab=37.83 E-value=55 Score=22.61 Aligned_cols=25 Identities=20% Similarity=0.505 Sum_probs=16.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH
Q 018495 127 EEIVMEIARLRQEQKSLDEELQGMN 151 (355)
Q Consensus 127 ~~L~~EIerLKreq~~L~qEL~~Lr 151 (355)
..|..|.+.|++..+.|...|..|+
T Consensus 4 qkL~sekeqLrrr~eqLK~kLeqlr 28 (32)
T PF02344_consen 4 QKLISEKEQLRRRREQLKHKLEQLR 28 (32)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHH-
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 3566777777777777777666554
No 83
>PF08657 DASH_Spc34: DASH complex subunit Spc34 ; InterPro: IPR013966 The DASH complex is a ~10 subunit microtubule-binding complex that is transferred to the kinetochore prior to mitosis []. In Saccharomyces cerevisiae (Baker's yeast) DASH forms both rings and spiral structures on microtubules in vitro [, ]. Components of the DASH complex, including Dam1, Duo1, Spc34, Dad1 and Ask1, are essential and connect the centromere to the plus end of spindle microtubules [].
Probab=37.65 E-value=81 Score=30.89 Aligned_cols=42 Identities=21% Similarity=0.194 Sum_probs=35.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHH
Q 018495 128 EIVMEIARLRQEQKSLDEELQGMNKRLEATERRPEQMMAFLY 169 (355)
Q Consensus 128 ~L~~EIerLKreq~~L~qEL~~Lrqr~q~~EqrqqqMm~FLa 169 (355)
+..+.|..|+++.+.|..+|..|+.++..++..++.|-.-..
T Consensus 177 ga~eki~~Lr~~y~~l~~~i~~lE~~VaeQ~~qL~~~n~~~~ 218 (259)
T PF08657_consen 177 GAREKIAALRQRYNQLSNSIAYLEAEVAEQEAQLERMNRSSS 218 (259)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCcc
Confidence 778899999999999999999999999998888777654433
No 84
>PRK15422 septal ring assembly protein ZapB; Provisional
Probab=37.65 E-value=1.1e+02 Score=25.19 Aligned_cols=40 Identities=10% Similarity=0.306 Sum_probs=24.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHH
Q 018495 127 EEIVMEIARLRQEQKSLDEELQGMNKRLEATERRPEQMMA 166 (355)
Q Consensus 127 ~~L~~EIerLKreq~~L~qEL~~Lrqr~q~~EqrqqqMm~ 166 (355)
..+..+++.++..+..|.+|-..|++.+..=+.|+..|+.
T Consensus 35 ~~L~~e~~~~~~~r~~L~~en~qLk~E~~~WqerLr~LLG 74 (79)
T PRK15422 35 NSLSQEVQNAQHQREELERENNHLKEQQNGWQERLQALLG 74 (79)
T ss_pred HHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3444555555555566777777777777666666665554
No 85
>PF03273 Baculo_gp64: Baculovirus gp64 envelope glycoprotein family; InterPro: IPR004955 Gp64 is the major envelope fusion glycoprotein in some, though not all, baculoviruses [, ]. It is found on the surface of both infected cells and budded virions as a homotrimer, and by determining the viral receptor preferences it defines the host range and infection efficiency. Baculovirus enters its host cells by endocytosis followed by a low-pH-induced fusion of the viral envelope with the endosomal membrane, allowing viral entrance into the cell cytoplasm. This membrane fusion, and also the efficient budding of virions from the infected cell, is dependent on Gp64. Gp75 is a homologous envelope glycoprotein from Thogotoviruses that, like Gp64, forms homotrimers and is involved in both binding and entering the host cell [].; GO: 0019048 virus-host interaction, 0019031 viral envelope; PDB: 3DUZ_A.
Probab=37.08 E-value=1.3e+02 Score=32.28 Aligned_cols=199 Identities=16% Similarity=0.260 Sum_probs=80.3
Q ss_pred CCcEEEcCCCCeEEEeCCchhhhhh--cccc-cCCCChh--HHHh---------hhcccCccccCCCCc-eEeccccccc
Q 018495 27 DSLISWGKANNSFIVVDPLDFSQRI--LPAY-FKHNNFS--SFVR---------QLNTYGFRKVDPDKW-EFANEWFLRG 91 (355)
Q Consensus 27 ~~iIsWs~~G~sFvV~d~~~F~~~V--LP~y-FKh~nfs--SFvR---------QLN~YGFrKv~pd~~-eF~He~F~RG 91 (355)
....-|+.++-|+++..+.+|.++- +-.| |+..++. +..| +++.+ |-.+..++| +|.|-.+.|-
T Consensus 178 ~~~l~wt~d~~S~l~~~~S~~tres~~i~Cf~~~~d~~D~~~~~~e~~~~~~fC~~~~~-~f~l~kn~~~C~~n~C~krk 256 (498)
T PF03273_consen 178 PSVLHWTRDGFSYLLKPKSEFTRESTEIACFLIKDDKYDPCYLGGEHDTEKQFCLDNGD-FFDLSKNQWVCKFNRCYKRK 256 (498)
T ss_dssp SS-EE--ETTEEEEESS---EEEEEEEEEEEEE---SS-TTS--EEE------EESSS--EEE--S-S-EEETTEEEEE-
T ss_pred CcceEeccCceEEEEccCceeeeeeeEEEEEEecCCcCChhHhccccccceeeeecCCc-EEEeccceeeeehhHHHhhh
Confidence 3557799999999998788887753 2223 3321111 1111 11111 223344566 6666555522
Q ss_pred ccccccceeeccCCCCCccccccccCCCCCCCCChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHh
Q 018495 92 QKHLLKNIVRRKHSSNRSAHHMMMRGGAGDQDLDDEEIVMEIARLRQEQKSLDEELQGMNKRLEATERRPEQMMAFLYKV 171 (355)
Q Consensus 92 ~~~LL~~IkRkk~~s~~~s~~~q~~~~~~~~~~~~~~L~~EIerLKreq~~L~qEL~~Lrqr~q~~EqrqqqMm~FLakv 171 (355)
...--+..-+........ ....+..+..+.+..-++.|.-|+..|..-|..|..++..+-..+.+++.-|+|+
T Consensus 257 ~e~V~k~rp~~wr~~~~~-------~~~~g~~AS~~Dl~~i~~~lmyE~~~Lr~nl~~L~~~~~~l~~~l~~vI~SvaKi 329 (498)
T PF03273_consen 257 KEIVVKERPRTWRHDEPP-------KHDLGATASKEDLMNIQESLMYENEGLRYNLEQLHAHFNKLSNMLNTVIQSVAKI 329 (498)
T ss_dssp ----------------------------TTS---HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTT
T ss_pred hhhhcccCCcccccCCCc-------ccccccccCHHHHHHHHHHHHHhchhhHhhHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 221111111111111100 0011123567777777777777777777777777777777777777777777776
Q ss_pred hcCCCcHHHHHhhhhhccccCccccccccccccCCCCcccccCCCCCCCCCCCCCCCcccccccccceeeeecCCCCCCC
Q 018495 172 VEDPDLLPRIIMEKESTTNRNNYYLGDKKRRLMISSSSQQQQQPSNSSSSGMAASSSIKSEEEEVGNIGVISSSSPDSGF 251 (355)
Q Consensus 172 vqnP~fl~~li~q~e~~~~~~~~~~~~KKRRl~~s~~~~~~~~P~~~~~~~~~~~ssvk~e~~~~~~~~~~~~~~~~~~~ 251 (355)
|..++-+||.+.-..+ -+..++--|...- ++|- .++.-...|+= -+||..+-+-+|+=+-|
T Consensus 330 --DeRLIG~L~~~~vsS~-----f~s~~~Fll~pC~-----~~~~---~~SNC~~~siy----~eGRwv~~~D~s~C~~~ 390 (498)
T PF03273_consen 330 --DERLIGRLMGNDVSSK-----FISDDTFLLMPCT-----SPPP---GDSNCYNGSIY----REGRWVHNTDSSQCTSF 390 (498)
T ss_dssp ---TTHHHHHTTS-EEEE-----ESSSS-EEEEE----------------SS-SS-SS-----BTTTB-------S----
T ss_pred --hHHHHHHHhcCcccce-----EecCcceEEeccc-----CCCC---CCccccCCeEE----eccEEEECCCccccccc
Confidence 4677778777655444 2445665554432 2221 11111233333 35888777767776655
Q ss_pred C
Q 018495 252 D 252 (355)
Q Consensus 252 ~ 252 (355)
.
T Consensus 391 ~ 391 (498)
T PF03273_consen 391 N 391 (498)
T ss_dssp S
T ss_pred c
Confidence 4
No 86
>PF00631 G-gamma: GGL domain; InterPro: IPR015898 This entry represents the G protein gamma subunit and the GGL (G protein gamma-like) domain, which are related in sequence and are comprised of an extended alpha-helical polypeptide. The G protein gamma subunit forms a stable dimer with the beta subunit, but it does not make any contact with the alpha subunit, which contacts the opposite face of the beta subunit. The GGL domain is found in several RGS (regulators of G protein signaling) proteins. GGL domains can interact with beta subunits to form novel dimers that prevent gamma subunit binding, and may prevent heterotrimer formation by inhibiting alpha subunit binding. The interaction between G protein beta-5 neuro-specific isoforms and RGS GGL domains may represent a general mode of binding between beta-propeller proteins and their partners [].; GO: 0004871 signal transducer activity, 0007186 G-protein coupled receptor protein signaling pathway, 0005834 heterotrimeric G-protein complex; PDB: 3PSC_G 3SN6_G 1OMW_G 2BCJ_G 1GG2_G 3PVW_G 3PVU_G 3AH8_G 3CIK_G 1GP2_G ....
Probab=36.88 E-value=45 Score=25.71 Aligned_cols=40 Identities=23% Similarity=0.460 Sum_probs=24.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHhhcCC
Q 018495 132 EIARLRQEQKSLDEELQGMNKRLEATERRPEQMMAFLYKVVEDP 175 (355)
Q Consensus 132 EIerLKreq~~L~qEL~~Lrqr~q~~EqrqqqMm~FLakvvqnP 175 (355)
++++|+++...|..||.. .|+ ..-+-.+.|+.|.. ...||
T Consensus 3 ~~~~l~~ei~~L~~el~~--~r~-~vS~a~~~li~y~~-~~~DP 42 (68)
T PF00631_consen 3 EKDQLKREIEQLRQELER--ERI-KVSKACKELIEYCE-STPDP 42 (68)
T ss_dssp HHHHHHHHHHHHHHHHTS-------HHHHHHHHHHHHH-GTC-H
T ss_pred HHHHHHHHHHHHHHHHcc--cce-eHHHHHHHHHHHhc-CCCCc
Confidence 456677777777777766 444 44557888999998 33333
No 87
>PF08172 CASP_C: CASP C terminal; InterPro: IPR012955 This domain is the C-terminal region of the CASP family of proteins. These are Golgi membrane proteins which are thought to have a role in vesicle transport [].; GO: 0006891 intra-Golgi vesicle-mediated transport, 0030173 integral to Golgi membrane
Probab=36.61 E-value=88 Score=30.41 Aligned_cols=47 Identities=26% Similarity=0.317 Sum_probs=34.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHhhc
Q 018495 127 EEIVMEIARLRQEQKSLDEELQGMNKRLEATERRPEQMMAFLYKVVE 173 (355)
Q Consensus 127 ~~L~~EIerLKreq~~L~qEL~~Lrqr~q~~EqrqqqMm~FLakvvq 173 (355)
.-+..+=+|.|+.+..|++|+..+++.+..++..++.+-+--.+++.
T Consensus 82 pIVtsQRDRFR~Rn~ELE~elr~~~~~~~~L~~Ev~~L~~DN~kLYE 128 (248)
T PF08172_consen 82 PIVTSQRDRFRQRNAELEEELRKQQQTISSLRREVESLRADNVKLYE 128 (248)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 35567788888888888888888888887777777766665555553
No 88
>COG1422 Predicted membrane protein [Function unknown]
Probab=36.22 E-value=1e+02 Score=29.39 Aligned_cols=43 Identities=14% Similarity=0.292 Sum_probs=26.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHH-----HHHHHHHhHHHHHHHHHHhhc
Q 018495 131 MEIARLRQEQKSLDEELQGMNK-----RLEATERRPEQMMAFLYKVVE 173 (355)
Q Consensus 131 ~EIerLKreq~~L~qEL~~Lrq-----r~q~~EqrqqqMm~FLakvvq 173 (355)
++++++|+.-+++.+|..++++ .++++|+.+.+|+.--..+++
T Consensus 72 ekm~~~qk~m~efq~e~~eA~~~~d~~~lkkLq~~qmem~~~Q~elmk 119 (201)
T COG1422 72 EKMKELQKMMKEFQKEFREAQESGDMKKLKKLQEKQMEMMDDQRELMK 119 (201)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4566667777777777666665 355555566666555555443
No 89
>COG1382 GimC Prefoldin, chaperonin cofactor [Posttranslational modification, protein turnover, chaperones]
Probab=36.16 E-value=1.3e+02 Score=26.53 Aligned_cols=43 Identities=16% Similarity=0.320 Sum_probs=27.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHhhc
Q 018495 131 MEIARLRQEQKSLDEELQGMNKRLEATERRPEQMMAFLYKVVE 173 (355)
Q Consensus 131 ~EIerLKreq~~L~qEL~~Lrqr~q~~EqrqqqMm~FLakvvq 173 (355)
.-++.|+.....|..++.+|+++.+..+.+++.|-+-|.+++.
T Consensus 70 ~~~~eL~er~E~Le~ri~tLekQe~~l~e~l~eLq~~i~~~l~ 112 (119)
T COG1382 70 EAVDELEERKETLELRIKTLEKQEEKLQERLEELQSEIQKALG 112 (119)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Confidence 3455566666666666666666666666666666666666554
No 90
>PF13863 DUF4200: Domain of unknown function (DUF4200)
Probab=35.82 E-value=1.5e+02 Score=24.74 Aligned_cols=42 Identities=33% Similarity=0.472 Sum_probs=21.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHhhc
Q 018495 128 EIVMEIARLRQEQKSLDEELQGMNKRLEATERRPEQMMAFLYKVVE 173 (355)
Q Consensus 128 ~L~~EIerLKreq~~L~qEL~~Lrqr~q~~EqrqqqMm~FLakvvq 173 (355)
....+|..|+.+...|..++..+..++.. .+.--.||.+|+.
T Consensus 78 ~k~~ei~~l~~~l~~l~~~~~k~e~~l~~----~~~Y~~fL~~v~~ 119 (126)
T PF13863_consen 78 EKEAEIKKLKAELEELKSEISKLEEKLEE----YKKYEEFLEKVVP 119 (126)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHH----HHHHHHHHHHhcc
Confidence 33445555555555555555555444433 2333466666663
No 91
>PF00170 bZIP_1: bZIP transcription factor cAMP response element binding (CREB) protein signature fos transforming protein signature jun transcription factor signature; InterPro: IPR011616 The basic-leucine zipper (bZIP) transcription factors [, ] of eukaryotic are proteins that contain a basic region mediating sequence-specific DNA-binding followed by a leucine zipper region (see IPR002158 from INTERPRO) required for dimerization.; GO: 0003700 sequence-specific DNA binding transcription factor activity, 0043565 sequence-specific DNA binding, 0046983 protein dimerization activity, 0006355 regulation of transcription, DNA-dependent; PDB: 2H7H_B 2OQQ_B 1S9K_E 1JNM_A 1JUN_A 1FOS_H 1A02_J 1T2K_C 1CI6_A 1DH3_C ....
Probab=35.67 E-value=1.6e+02 Score=22.08 Aligned_cols=35 Identities=20% Similarity=0.328 Sum_probs=23.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHH
Q 018495 130 VMEIARLRQEQKSLDEELQGMNKRLEATERRPEQM 164 (355)
Q Consensus 130 ~~EIerLKreq~~L~qEL~~Lrqr~q~~EqrqqqM 164 (355)
...++.|......|..+...|+.++..++..+..|
T Consensus 25 k~~~~~Le~~~~~L~~en~~L~~~~~~L~~~~~~L 59 (64)
T PF00170_consen 25 KQYIEELEEKVEELESENEELKKELEQLKKEIQSL 59 (64)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 45666777777777777777777766666555544
No 92
>PF02996 Prefoldin: Prefoldin subunit; InterPro: IPR004127 This entry comprises of several prefoldin subunits. Prefoldin (PFD) is a chaperone that interacts exclusively with type II chaperonins, hetero-oligomers lacking an obligate co-chaperonin that are found only in eukaryotes (chaperonin-containing T-complex polypeptide-1 (CCT)) and archaea. Eukaryotic PFD is a multi-subunit complex containing six polypeptides in the molecular mass range of 14-23 kDa. In archaea, on the other hand, PFD is composed of two types of subunits, two alpha and four beta. The six subunits associate to form two back-to-back up-and-down eight-stranded barrels, from which hang six coiled coils. Each subunit contributes one (beta subunits) or two (alpha subunits) beta hairpin turns to the barrels. The coiled coils are formed by the N and C termini of an individual subunit. Overall, this unique arrangement resembles a jellyfish. The eukaryotic PFD hexamer is composed of six different subunits; however, these can be grouped into two alpha-like (PFD3 and -5) and four beta-like (PFD1, -2, -4, and -6) subunits based on amino acid sequence similarity with their archaeal counterparts. Eukaryotic PFD has a six-legged structure similar to that seen in the archaeal homologue [, ]. This family contains the archaeal alpha subunit, eukaryotic prefoldin subunits 3 and 5 and the UXT (ubiquitously expressed transcript) family. Eukaryotic PFD has been shown to bind both actin and tubulin co-translationally. The chaperone then delivers the target protein to CCT, interacting with the chaperonin through the tips of the coiled coils. No authentic target proteins of any archaeal PFD have been identified, to date.; GO: 0051082 unfolded protein binding, 0006457 protein folding, 0016272 prefoldin complex; PDB: 1FXK_C 2ZDI_C.
Probab=35.26 E-value=1.4e+02 Score=24.65 Aligned_cols=42 Identities=26% Similarity=0.350 Sum_probs=21.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHh
Q 018495 130 VMEIARLRQEQKSLDEELQGMNKRLEATERRPEQMMAFLYKV 171 (355)
Q Consensus 130 ~~EIerLKreq~~L~qEL~~Lrqr~q~~EqrqqqMm~FLakv 171 (355)
..-++.|++....|..++..+++++...+.+++.+..-+.++
T Consensus 76 ~eA~~~l~~r~~~l~~~~~~l~~~~~~~~~~~~~~~~~l~~~ 117 (120)
T PF02996_consen 76 EEAIEFLKKRIKELEEQLEKLEKELAELQAQIEQLEQTLQQL 117 (120)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 344445555555555555555555555555554444444443
No 93
>PF04111 APG6: Autophagy protein Apg6; InterPro: IPR007243 Macroautophagy is a bulk degradation process induced by starvation in eukaryotic cells. In yeast, 15 Apg proteins coordinate the formation of autophagosomes. No molecule involved in autophagy has yet been identified in higher eukaryotes []. The pre-autophagosomal structure contains at least five Apg proteins: Apg1p, Apg2p, Apg5p, Aut7p/Apg8p and Apg16p. It is found in the vacuole []. The C-terminal glycine of Apg12p is conjugated to a lysine residue of Apg5p via an isopeptide bond. During autophagy, cytoplasmic components are enclosed in autophagosomes and delivered to lysosomes/vacuoles. Auotphagy protein 16 (Apg16) has been shown to be bind to Apg5 and is required for the function of the Apg12p-Apg5p conjugate []. Autophagy protein 5 (Apg5) is directly required for the import of aminopeptidase I via the cytoplasm-to-vacuole targeting pathway []. Apg6/Vps30p has two distinct functions in the autophagic process, either associated with the membrane or in a retrieval step of the carboxypeptidase Y sorting pathway [].; GO: 0006914 autophagy; PDB: 3Q8T_A 3VP7_A 4DDP_A.
Probab=34.96 E-value=1.5e+02 Score=29.56 Aligned_cols=25 Identities=36% Similarity=0.567 Sum_probs=11.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH
Q 018495 128 EIVMEIARLRQEQKSLDEELQGMNK 152 (355)
Q Consensus 128 ~L~~EIerLKreq~~L~qEL~~Lrq 152 (355)
.++.+++.|+++...|.+||..|.+
T Consensus 47 ~~~~el~~le~Ee~~l~~eL~~LE~ 71 (314)
T PF04111_consen 47 ELEEELEKLEQEEEELLQELEELEK 71 (314)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4444455555554444444444443
No 94
>PRK03947 prefoldin subunit alpha; Reviewed
Probab=34.79 E-value=1.4e+02 Score=25.66 Aligned_cols=37 Identities=19% Similarity=0.284 Sum_probs=19.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHH
Q 018495 128 EIVMEIARLRQEQKSLDEELQGMNKRLEATERRPEQM 164 (355)
Q Consensus 128 ~L~~EIerLKreq~~L~qEL~~Lrqr~q~~EqrqqqM 164 (355)
.|...++.|......|..++..++++++..++.++++
T Consensus 98 ~l~~~~~~l~~~~~~l~~~l~~~~~~~~~~~~~l~~l 134 (140)
T PRK03947 98 ILDKRKEELEKALEKLEEALQKLASRIAQLAQELQQL 134 (140)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4444555555555555555555555555544444443
No 95
>PF11932 DUF3450: Protein of unknown function (DUF3450); InterPro: IPR016866 There is currently no experimental data for members of this group or their homologues, nor do they exhibit features indicative of any function. However, they are found in an operon along with components of a TonB transport system (typified by Vibrio cholerae TonB2 [], and are predicted to be localized to the periplasmic space. Caution: the low-complexity nature of these sequences produces spurious BLAST hits to chromosome segregation ATPases (which are much longer in length and contain canonical Walker motifs). Accordingly, some members are misidentified as such.
Probab=34.74 E-value=1.6e+02 Score=28.04 Aligned_cols=8 Identities=13% Similarity=0.555 Sum_probs=3.7
Q ss_pred cccCcCcc
Q 018495 279 SVSSSGWL 286 (355)
Q Consensus 279 ~~~~~~~~ 286 (355)
.....+|.
T Consensus 208 ~~~~~~W~ 215 (251)
T PF11932_consen 208 DPATGQWQ 215 (251)
T ss_pred cCCCCCCe
Confidence 33344665
No 96
>PRK10722 hypothetical protein; Provisional
Probab=34.71 E-value=82 Score=30.90 Aligned_cols=27 Identities=19% Similarity=0.203 Sum_probs=13.4
Q ss_pred HHHHHHHHHHHHHHHHhHHHHHHHHHH
Q 018495 144 DEELQGMNKRLEATERRPEQMMAFLYK 170 (355)
Q Consensus 144 ~qEL~~Lrqr~q~~EqrqqqMm~FLak 170 (355)
..+|.+|++++...+.++.+.-.-|..
T Consensus 175 D~qlD~lrqq~~~Lq~~L~~t~rKLEn 201 (247)
T PRK10722 175 DSELDALRQQQQRLQYQLELTTRKLEN 201 (247)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 455555555555555544444444333
No 97
>PF10473 CENP-F_leu_zip: Leucine-rich repeats of kinetochore protein Cenp-F/LEK1; InterPro: IPR019513 Cenp-F, a centromeric kinetochore, microtubule-binding protein consisting of two 1,600-amino acid-long coils, is essential for the full functioning of the mitotic checkpoint pathway [, ]. There are several leucine-rich repeats along the sequence of LEK1 that are considered to be zippers, though they do not appear to be binding DNA directly in this instance []. ; GO: 0008134 transcription factor binding, 0042803 protein homodimerization activity, 0045502 dynein binding
Probab=34.31 E-value=2e+02 Score=25.78 Aligned_cols=49 Identities=22% Similarity=0.374 Sum_probs=33.0
Q ss_pred ChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHhhc
Q 018495 125 DDEEIVMEIARLRQEQKSLDEELQGMNKRLEATERRPEQMMAFLYKVVE 173 (355)
Q Consensus 125 ~~~~L~~EIerLKreq~~L~qEL~~Lrqr~q~~EqrqqqMm~FLakvvq 173 (355)
....|..++..|+.++..|.+++..++.++..++.....+...|..+-+
T Consensus 67 el~~L~~EL~~l~sEk~~L~k~lq~~q~kv~eLE~~~~~~~~~l~~~E~ 115 (140)
T PF10473_consen 67 ELNQLELELDTLRSEKENLDKELQKKQEKVSELESLNSSLENLLQEKEQ 115 (140)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHH
Confidence 3446667777777777777777777777777777666666555554443
No 98
>PRK13923 putative spore coat protein regulator protein YlbO; Provisional
Probab=33.98 E-value=1.6e+02 Score=27.45 Aligned_cols=43 Identities=21% Similarity=0.370 Sum_probs=34.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHh
Q 018495 129 IVMEIARLRQEQKSLDEELQGMNKRLEATERRPEQMMAFLYKV 171 (355)
Q Consensus 129 L~~EIerLKreq~~L~qEL~~Lrqr~q~~EqrqqqMm~FLakv 171 (355)
+..++..|+.++..|..|+..|++++.-.+...+.|+.-+.++
T Consensus 109 ~~~e~~kl~~~~e~L~~e~~~L~~~~~~~~eDy~~Li~Im~ra 151 (170)
T PRK13923 109 LSEQIGKLQEEEEKLSWENQTLKQELAITEEDYRALIVIMNRA 151 (170)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4678999999999999999999999888877777666655444
No 99
>KOG3915 consensus Transcription regulator dachshund, contains SKI/SNO domain [Transcription]
Probab=33.84 E-value=1.3e+02 Score=32.52 Aligned_cols=15 Identities=13% Similarity=0.240 Sum_probs=7.1
Q ss_pred HHHHHHHHHHHHHHH
Q 018495 136 LRQEQKSLDEELQGM 150 (355)
Q Consensus 136 LKreq~~L~qEL~~L 150 (355)
++.|+..||.|+.+-
T Consensus 526 iq~Ek~ELkmd~lre 540 (641)
T KOG3915|consen 526 IQLEKTELKMDFLRE 540 (641)
T ss_pred HHHHHHHHHHHHHHH
Confidence 344445555554443
No 100
>PF01920 Prefoldin_2: Prefoldin subunit; InterPro: IPR002777 Prefoldin (PFD) is a chaperone that interacts exclusively with type II chaperonins, hetero-oligomers lacking an obligate co-chaperonin that are found only in eukaryotes (chaperonin-containing T-complex polypeptide-1 (CCT)) and archaea. Eukaryotic PFD is a multi-subunit complex containing six polypeptides in the molecular mass range of 14-23 kDa. In archaea, on the other hand, PFD is composed of two types of subunits, two alpha and four beta. The six subunits associate to form two back-to-back up-and-down eight-stranded barrels, from which hang six coiled coils. Each subunit contributes one (beta subunits) or two (alpha subunits) beta hairpin turns to the barrels. The coiled coils are formed by the N and C termini of an individual subunit. Overall, this unique arrangement resembles a jellyfish. The eukaryotic PFD hexamer is composed of six different subunits; however, these can be grouped into two alpha-like (PFD3 and -5) and four beta-like (PFD1, -2, -4, and -6) subunits based on amino acid sequence similarity with their archaeal counterparts. Eukaryotic PFD has a six-legged structure similar to that seen in the archaeal homologue [, ]. This family contains the archaeal beta subunit, eukaryotic prefoldin subunits 1, 2, 4 and 6. Eukaryotic PFD has been shown to bind both actin and tubulin co-translationally. The chaperone then delivers the target protein to CCT, interacting with the chaperonin through the tips of the coiled coils. No authentic target proteins of any archaeal PFD have been identified, to date.; GO: 0051082 unfolded protein binding, 0006457 protein folding, 0016272 prefoldin complex; PDB: 2ZDI_B 3AEI_B 2ZQM_A 1FXK_A.
Probab=33.63 E-value=1.6e+02 Score=23.55 Aligned_cols=42 Identities=21% Similarity=0.440 Sum_probs=22.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHhh
Q 018495 131 MEIARLRQEQKSLDEELQGMNKRLEATERRPEQMMAFLYKVV 172 (355)
Q Consensus 131 ~EIerLKreq~~L~qEL~~Lrqr~q~~EqrqqqMm~FLakvv 172 (355)
.-++.|+.+...+..++..|+.+....+.+++.+-.-|...+
T Consensus 62 ~~~~~L~~~~~~~~~~i~~l~~~~~~l~~~l~~~~~~l~~~~ 103 (106)
T PF01920_consen 62 EAIEELEERIEKLEKEIKKLEKQLKYLEKKLKELKKKLYELF 103 (106)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCC
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 334455555555556666666555555555555544444433
No 101
>PF06005 DUF904: Protein of unknown function (DUF904); InterPro: IPR009252 Cell division protein ZapB is a non-essential, abundant cell division factor that is required for proper Z-ring formation. It is recruited early to the divisome by direct interaction with FtsZ, stimulating Z-ring assembly and thereby promoting cell division earlier in the cell cycle. Its recruitment to the Z-ring requires functional FtsA or ZipA.; GO: 0000917 barrier septum formation, 0043093 cytokinesis by binary fission, 0005737 cytoplasm; PDB: 2JEE_A.
Probab=33.59 E-value=1.6e+02 Score=23.41 Aligned_cols=25 Identities=12% Similarity=0.153 Sum_probs=11.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH
Q 018495 129 IVMEIARLRQEQKSLDEELQGMNKR 153 (355)
Q Consensus 129 L~~EIerLKreq~~L~qEL~~Lrqr 153 (355)
|+..|..+=.....|..|+..|+++
T Consensus 9 LE~ki~~aveti~~Lq~e~eeLke~ 33 (72)
T PF06005_consen 9 LEEKIQQAVETIALLQMENEELKEK 33 (72)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3444444444444444444444443
No 102
>PF02996 Prefoldin: Prefoldin subunit; InterPro: IPR004127 This entry comprises of several prefoldin subunits. Prefoldin (PFD) is a chaperone that interacts exclusively with type II chaperonins, hetero-oligomers lacking an obligate co-chaperonin that are found only in eukaryotes (chaperonin-containing T-complex polypeptide-1 (CCT)) and archaea. Eukaryotic PFD is a multi-subunit complex containing six polypeptides in the molecular mass range of 14-23 kDa. In archaea, on the other hand, PFD is composed of two types of subunits, two alpha and four beta. The six subunits associate to form two back-to-back up-and-down eight-stranded barrels, from which hang six coiled coils. Each subunit contributes one (beta subunits) or two (alpha subunits) beta hairpin turns to the barrels. The coiled coils are formed by the N and C termini of an individual subunit. Overall, this unique arrangement resembles a jellyfish. The eukaryotic PFD hexamer is composed of six different subunits; however, these can be grouped into two alpha-like (PFD3 and -5) and four beta-like (PFD1, -2, -4, and -6) subunits based on amino acid sequence similarity with their archaeal counterparts. Eukaryotic PFD has a six-legged structure similar to that seen in the archaeal homologue [, ]. This family contains the archaeal alpha subunit, eukaryotic prefoldin subunits 3 and 5 and the UXT (ubiquitously expressed transcript) family. Eukaryotic PFD has been shown to bind both actin and tubulin co-translationally. The chaperone then delivers the target protein to CCT, interacting with the chaperonin through the tips of the coiled coils. No authentic target proteins of any archaeal PFD have been identified, to date.; GO: 0051082 unfolded protein binding, 0006457 protein folding, 0016272 prefoldin complex; PDB: 1FXK_C 2ZDI_C.
Probab=33.55 E-value=1.2e+02 Score=25.04 Aligned_cols=39 Identities=23% Similarity=0.385 Sum_probs=33.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHH
Q 018495 127 EEIVMEIARLRQEQKSLDEELQGMNKRLEATERRPEQMM 165 (355)
Q Consensus 127 ~~L~~EIerLKreq~~L~qEL~~Lrqr~q~~EqrqqqMm 165 (355)
.-+...++.|+.....|..++..++.++...+..++++.
T Consensus 80 ~~l~~r~~~l~~~~~~l~~~~~~~~~~~~~~~~~l~~~~ 118 (120)
T PF02996_consen 80 EFLKKRIKELEEQLEKLEKELAELQAQIEQLEQTLQQLY 118 (120)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHCHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 466788999999999999999999999988887777664
No 103
>PRK10884 SH3 domain-containing protein; Provisional
Probab=33.54 E-value=99 Score=29.22 Aligned_cols=25 Identities=28% Similarity=0.452 Sum_probs=14.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH
Q 018495 132 EIARLRQEQKSLDEELQGMNKRLEA 156 (355)
Q Consensus 132 EIerLKreq~~L~qEL~~Lrqr~q~ 156 (355)
++..|+++++.|.+||..++++++.
T Consensus 133 ~~~~L~~~n~~L~~~l~~~~~~~~~ 157 (206)
T PRK10884 133 VINGLKEENQKLKNQLIVAQKKVDA 157 (206)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3444566666666666665555544
No 104
>PRK13182 racA polar chromosome segregation protein; Reviewed
Probab=33.46 E-value=1.2e+02 Score=27.91 Aligned_cols=22 Identities=14% Similarity=0.167 Sum_probs=13.2
Q ss_pred ccccccccccccceeeccCCCC
Q 018495 86 EWFLRGQKHLLKNIVRRKHSSN 107 (355)
Q Consensus 86 e~F~RG~~~LL~~IkRkk~~s~ 107 (355)
-.|...+...|..|++-+...-
T Consensus 36 R~y~~~dl~~L~~I~~l~~~Gm 57 (175)
T PRK13182 36 YIFTEEDLQLLEYVKSQIEEGQ 57 (175)
T ss_pred EEECHHHHHHHHHHHHHHHcCC
Confidence 3344445667788877666543
No 105
>KOG2185 consensus Predicted RNA-processing protein, contains G-patch domain [RNA processing and modification]
Probab=33.43 E-value=1.3e+02 Score=31.78 Aligned_cols=27 Identities=26% Similarity=0.223 Sum_probs=22.3
Q ss_pred ChHHHHHHHHHHHHHHHHHHHHHHHHH
Q 018495 125 DDEEIVMEIARLRQEQKSLDEELQGMN 151 (355)
Q Consensus 125 ~~~~L~~EIerLKreq~~L~qEL~~Lr 151 (355)
....++.||.+||++...|.+-|.+-+
T Consensus 414 ~lv~~edeirrlkrdm~klkq~l~RN~ 440 (486)
T KOG2185|consen 414 ALVEYEDEIRRLKRDMLKLKQMLNRNK 440 (486)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhhcc
Confidence 345778999999999999999987743
No 106
>PF07200 Mod_r: Modifier of rudimentary (Mod(r)) protein; InterPro: IPR009851 This entry represents a conserved region approximately 150 residues long within a number of eukaryotic proteins that show homology with Drosophila melanogaster Modifier of rudimentary (Mod(r)) proteins. The N-terminal half of Mod(r) proteins is acidic, whereas the C-terminal half is basic [], and both of these regions are represented in this family.; PDB: 2CAZ_F 2P22_C 2F66_F.
Probab=33.30 E-value=1.3e+02 Score=26.12 Aligned_cols=35 Identities=23% Similarity=0.438 Sum_probs=20.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHH
Q 018495 130 VMEIARLRQEQKSLDEELQGMNKRLEATERRPEQM 164 (355)
Q Consensus 130 ~~EIerLKreq~~L~qEL~~Lrqr~q~~EqrqqqM 164 (355)
..+++.+|.+...+..++..++++.+..+++++.+
T Consensus 54 ~~~l~~~r~~l~~~~~~~~~L~~~~~~k~~~~~~l 88 (150)
T PF07200_consen 54 EPELEELRSQLQELYEELKELESEYQEKEQQQDEL 88 (150)
T ss_dssp -HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred chHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 45556666666666666666666665555555444
No 107
>PHA02047 phage lambda Rz1-like protein
Probab=33.22 E-value=1.9e+02 Score=24.74 Aligned_cols=44 Identities=14% Similarity=0.206 Sum_probs=30.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHhhc
Q 018495 130 VMEIARLRQEQKSLDEELQGMNKRLEATERRPEQMMAFLYKVVE 173 (355)
Q Consensus 130 ~~EIerLKreq~~L~qEL~~Lrqr~q~~EqrqqqMm~FLakvvq 173 (355)
..+.++|..+.+.+...+..++++++..+++.++--.=+..+++
T Consensus 33 h~~a~~la~qLE~a~~r~~~~Q~~V~~l~~kae~~t~Ei~~aL~ 76 (101)
T PHA02047 33 HEEAKRQTARLEALEVRYATLQRHVQAVEARTNTQRQEVDRALD 76 (101)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 35677777777777777777777777777766665555656654
No 108
>PF10458 Val_tRNA-synt_C: Valyl tRNA synthetase tRNA binding arm; InterPro: IPR019499 The aminoacyl-tRNA synthetases (6.1.1. from EC) catalyse the attachment of an amino acid to its cognate transfer RNA molecule in a highly specific two-step reaction. These proteins differ widely in size and oligomeric state, and have limited sequence homology []. The 20 aminoacyl-tRNA synthetases are divided into two classes, I and II. Class I aminoacyl-tRNA synthetases contain a characteristic Rossman fold catalytic domain and are mostly monomeric []. Class II aminoacyl-tRNA synthetases share an anti-parallel beta-sheet fold flanked by alpha-helices [], and are mostly dimeric or multimeric, containing at least three conserved regions [, , ]. However, tRNA binding involves an alpha-helical structure that is conserved between class I and class II synthetases. In reactions catalysed by the class I aminoacyl-tRNA synthetases, the aminoacyl group is coupled to the 2'-hydroxyl of the tRNA, while, in class II reactions, the 3'-hydroxyl site is preferred. The synthetases specific for arginine, cysteine, glutamic acid, glutamine, isoleucine, leucine, methionine, tyrosine, tryptophan and valine belong to class I synthetases. The synthetases specific for alanine, asparagine, aspartic acid, glycine, histidine, lysine, phenylalanine, proline, serine, and threonine belong to class-II synthetases []. Based on their mode of binding to the tRNA acceptor stem, both classes of tRNA synthetases have been subdivided into three subclasses, designated 1a, 1b, 1c and 2a, 2b, 2c. This entry represents the C-terminal domain of Valyl-tRNA synthetase, which consists of two helices in a long alpha-hairpin. Valyl-tRNA synthetase (6.1.1.9 from EC) is an alpha monomer that belongs to class Ia.; GO: 0000166 nucleotide binding, 0004832 valine-tRNA ligase activity, 0005524 ATP binding, 0006438 valyl-tRNA aminoacylation, 0005737 cytoplasm; PDB: 1IVS_B 1GAX_B.
Probab=33.17 E-value=1.1e+02 Score=23.49 Aligned_cols=33 Identities=21% Similarity=0.397 Sum_probs=21.2
Q ss_pred HHHHHHHHHHHHHHHHHhHHHHHHHHHHhhcCCCcHH
Q 018495 143 LDEELQGMNKRLEATERRPEQMMAFLYKVVEDPDLLP 179 (355)
Q Consensus 143 L~qEL~~Lrqr~q~~EqrqqqMm~FLakvvqnP~fl~ 179 (355)
+..|+.+|.+++...+ +-+.-+.+.+.||.|+.
T Consensus 2 ~~~E~~rL~Kel~kl~----~~i~~~~~kL~n~~F~~ 34 (66)
T PF10458_consen 2 VEAEIERLEKELEKLE----KEIERLEKKLSNENFVE 34 (66)
T ss_dssp HHHHHHHHHHHHHHHH----HHHHHHHHHHCSTTHHH
T ss_pred HHHHHHHHHHHHHHHH----HHHHHHHHHHcCccccc
Confidence 3456666666665443 34466777788898885
No 109
>COG1382 GimC Prefoldin, chaperonin cofactor [Posttranslational modification, protein turnover, chaperones]
Probab=33.12 E-value=1.6e+02 Score=25.97 Aligned_cols=40 Identities=18% Similarity=0.314 Sum_probs=27.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHH
Q 018495 127 EEIVMEIARLRQEQKSLDEELQGMNKRLEATERRPEQMMA 166 (355)
Q Consensus 127 ~~L~~EIerLKreq~~L~qEL~~Lrqr~q~~EqrqqqMm~ 166 (355)
..|+..++.|.-....|..+-.+++.+++.++..+++++.
T Consensus 73 ~eL~er~E~Le~ri~tLekQe~~l~e~l~eLq~~i~~~l~ 112 (119)
T COG1382 73 DELEERKETLELRIKTLEKQEEKLQERLEELQSEIQKALG 112 (119)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Confidence 3666667777777777777777777777777766666653
No 110
>PF14817 HAUS5: HAUS augmin-like complex subunit 5
Probab=32.91 E-value=1.4e+02 Score=32.99 Aligned_cols=46 Identities=28% Similarity=0.446 Sum_probs=36.1
Q ss_pred ChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHH
Q 018495 125 DDEEIVMEIARLRQEQKSLDEELQGMNKRLEATERRPEQMMAFLYK 170 (355)
Q Consensus 125 ~~~~L~~EIerLKreq~~L~qEL~~Lrqr~q~~EqrqqqMm~FLak 170 (355)
....+..+|++|+.+...|.++|..+..++...|..+++|..=+..
T Consensus 80 ~r~~L~~everLraei~~l~~~I~~~e~e~~~~e~~~~q~~~~~~~ 125 (632)
T PF14817_consen 80 RRRELEKEVERLRAEIQELDKEIESREREVSRQEASREQMLDKISD 125 (632)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4558888999999999999999998888888777777776544433
No 111
>PRK13729 conjugal transfer pilus assembly protein TraB; Provisional
Probab=32.77 E-value=1.3e+02 Score=32.24 Aligned_cols=42 Identities=12% Similarity=0.237 Sum_probs=27.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHH
Q 018495 127 EEIVMEIARLRQEQKSLDEELQGMNKRLEATERRPEQMMAFL 168 (355)
Q Consensus 127 ~~L~~EIerLKreq~~L~qEL~~Lrqr~q~~EqrqqqMm~FL 168 (355)
.+|+.+|+.||++.+.|.+++..++++++.+|..+++|-.=+
T Consensus 79 sELEKqLaaLrqElq~~saq~~dle~KIkeLEaE~~~Lk~Ql 120 (475)
T PRK13729 79 AQMQKQYEEIRRELDVLNKQRGDDQRRIEKLGQDNAALAEQV 120 (475)
T ss_pred HHHHHHHHHHHHHHHHHhhhhhhHHHHHHHHHHHHHHHHHHH
Confidence 466677777777766666666666666666666655554444
No 112
>PF04728 LPP: Lipoprotein leucine-zipper; InterPro: IPR006817 This repeating sequence, NAKVDQLSNDV, is found in the enterobacterial outer membrane lipoprotein LPP. The outer membrane lipoprotein is the most abundant protein in an Escherichia coli cell. The messenger RNA for the lipoprotein of the E. coli outer membrane codes for a putative precursor, prolipoprotein, which has 20 additional amino acid residues extending from the amino terminus of the lipoprotein.; GO: 0019867 outer membrane; PDB: 1JCC_A 2GUV_C 2GUS_A 1JCD_A 1KFM_A 1T8Z_D 1KFN_A 1EQ7_A.
Probab=32.75 E-value=1.6e+02 Score=22.71 Aligned_cols=40 Identities=10% Similarity=0.272 Sum_probs=26.5
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHH
Q 018495 126 DEEIVMEIARLRQEQKSLDEELQGMNKRLEATERRPEQMM 165 (355)
Q Consensus 126 ~~~L~~EIerLKreq~~L~qEL~~Lrqr~q~~EqrqqqMm 165 (355)
-..|..+|++|..+.+.|..++...+..-...-+|+..+.
T Consensus 12 Vq~L~~kvdqLs~dv~~lr~~v~~ak~EAaRAN~RlDN~a 51 (56)
T PF04728_consen 12 VQTLNSKVDQLSSDVNALRADVQAAKEEAARANQRLDNIA 51 (56)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhH
Confidence 3466677777777777777777777666555555555443
No 113
>PF04325 DUF465: Protein of unknown function (DUF465); InterPro: IPR007420 Family members are found in small bacterial proteins, and also in the heavy chains of eukaryotic myosin and kinesin, C-terminal of the motor domain. Members of this family may form coiled coil structures.; PDB: 1ZHC_A.
Probab=31.92 E-value=80 Score=22.89 Aligned_cols=22 Identities=27% Similarity=0.508 Sum_probs=16.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHH
Q 018495 131 MEIARLRQEQKSLDEELQGMNK 152 (355)
Q Consensus 131 ~EIerLKreq~~L~qEL~~Lrq 152 (355)
.++.+||++.-.|..||.++.+
T Consensus 27 ~~l~~LKk~kL~LKDei~~ll~ 48 (49)
T PF04325_consen 27 EELERLKKEKLRLKDEIYRLLR 48 (49)
T ss_dssp HHHHHHHHHHHHHHHHHHHHH-
T ss_pred HHHHHHHHHHHHHHHHHHHHHc
Confidence 5778888888888888877654
No 114
>cd00890 Prefoldin Prefoldin is a hexameric molecular chaperone complex, found in both eukaryotes and archaea, that binds and stabilizes newly synthesized polypeptides allowing them to fold correctly. The complex contains two alpha and four beta subunits, the two subunits being evolutionarily related. In archaea, there is usually only one gene for each subunit while in eukaryotes there two or more paralogous genes encoding each subunit adding heterogeneity to the structure of the hexamer. The structure of the complex consists of a double beta barrel assembly with six protruding coiled-coils.
Probab=31.85 E-value=1.5e+02 Score=24.50 Aligned_cols=36 Identities=11% Similarity=0.293 Sum_probs=18.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHH
Q 018495 128 EIVMEIARLRQEQKSLDEELQGMNKRLEATERRPEQ 163 (355)
Q Consensus 128 ~L~~EIerLKreq~~L~qEL~~Lrqr~q~~Eqrqqq 163 (355)
.+...++.|+.....|..++..+++++...+..+++
T Consensus 91 ~l~~r~~~l~~~~~~l~~~~~~~~~~~~~l~~~l~~ 126 (129)
T cd00890 91 FLKKRLETLEKQIEKLEKQLEKLQDQITELQEELQQ 126 (129)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 344455555555555555555555555544444433
No 115
>cd00632 Prefoldin_beta Prefoldin beta; Prefoldin is a hexameric molecular chaperone complex, composed of two evolutionarily related subunits (alpha and beta), which are found in both eukaryotes and archaea. Prefoldin binds and stabilizes newly synthesized polypeptides allowing them to fold correctly. The hexameric structure consists of a double beta barrel assembly with six protruding coiled-coils. The alpha prefoldin subunits have two beta hairpin structures while the beta prefoldin subunits (this CD) have only one hairpin that is most similar to the second hairpin of the alpha subunit. The prefoldin hexamer consists of two alpha and four beta subunits and is assembled from the beta hairpins of all six subunits. The alpha subunits initially dimerize providing a structural nucleus for the assembly of the beta subunits. In archaea, there is usually only one gene for each subunit while in eukaryotes there two or more paralogous genes encoding each subunit adding heterogeneity to the st
Probab=31.61 E-value=1.1e+02 Score=25.32 Aligned_cols=11 Identities=9% Similarity=0.462 Sum_probs=3.9
Q ss_pred HHHHHHHHHHH
Q 018495 143 LDEELQGMNKR 153 (355)
Q Consensus 143 L~qEL~~Lrqr 153 (355)
|..++..+.++
T Consensus 82 l~~~~~~l~~~ 92 (105)
T cd00632 82 LERQEEDLQEK 92 (105)
T ss_pred HHHHHHHHHHH
Confidence 33333333333
No 116
>PF10883 DUF2681: Protein of unknown function (DUF2681); InterPro: IPR020274 This entry contains membrane proteins with no known function.
Probab=31.41 E-value=1.6e+02 Score=24.46 Aligned_cols=26 Identities=19% Similarity=0.286 Sum_probs=11.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHH
Q 018495 131 MEIARLRQEQKSLDEELQGMNKRLEA 156 (355)
Q Consensus 131 ~EIerLKreq~~L~qEL~~Lrqr~q~ 156 (355)
.++++|..+++.|..|......+++.
T Consensus 30 ~~~~kL~~en~qlk~Ek~~~~~qvkn 55 (87)
T PF10883_consen 30 KQNAKLQKENEQLKTEKAVAETQVKN 55 (87)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34444444444444444444444333
No 117
>PRK05892 nucleoside diphosphate kinase regulator; Provisional
Probab=31.28 E-value=1.7e+02 Score=26.39 Aligned_cols=26 Identities=27% Similarity=0.433 Sum_probs=18.6
Q ss_pred CChHHHHHHHHHHHHHHHHHHHHHHH
Q 018495 124 LDDEEIVMEIARLRQEQKSLDEELQG 149 (355)
Q Consensus 124 ~~~~~L~~EIerLKreq~~L~qEL~~ 149 (355)
.+...|..|++.|+.+...+.+++..
T Consensus 11 eg~~~L~~EL~~L~~~r~~i~~~i~~ 36 (158)
T PRK05892 11 AARDHLEAELARLRARRDRLAVEVND 36 (158)
T ss_pred HHHHHHHHHHHHHHHHhHHHHHHHHH
Confidence 35668888888888777677666643
No 118
>TIGR02449 conserved hypothetical protein TIGR02449. Members of this family are small proteins, typically 73 amino acids in length, with single copies in each of several Proteobacteria, including Xylella fastidiosa, Pseudomonas aeruginosa, and Xanthomonas campestris. The function is unknown.
Probab=31.10 E-value=2.7e+02 Score=22.04 Aligned_cols=39 Identities=10% Similarity=0.160 Sum_probs=24.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHH
Q 018495 128 EIVMEIARLRQEQKSLDEELQGMNKRLEATERRPEQMMA 166 (355)
Q Consensus 128 ~L~~EIerLKreq~~L~qEL~~Lrqr~q~~EqrqqqMm~ 166 (355)
.|+..|++|-+-.+.|..|=..|++++...+..-.+++.
T Consensus 4 ~Le~kle~Li~~~~~L~~EN~~Lr~q~~~~~~ER~~L~e 42 (65)
T TIGR02449 4 ALAAQVEHLLEYLERLKSENRLLRAQEKTWREERAQLLE 42 (65)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 456667777777777777777777766665544433333
No 119
>PF11559 ADIP: Afadin- and alpha -actinin-Binding; InterPro: IPR021622 This family is found in mammals where it is localised at cell-cell adherens junctions [], and in Sch. pombe and other fungi where it anchors spindle-pole bodies to spindle microtubules []. It is a coiled-coil structure, and in pombe, it is required for anchoring the minus end of spindle microtubules to the centrosome equivalent, the spindle-pole body. The name ADIP derives from the family being composed of Afadin- and alpha -Actinin-Binding Proteins Localised at Cell-Cell Adherens Junctions.
Probab=30.89 E-value=2.3e+02 Score=24.70 Aligned_cols=10 Identities=30% Similarity=0.381 Sum_probs=5.6
Q ss_pred hhcccCcccc
Q 018495 67 QLNTYGFRKV 76 (355)
Q Consensus 67 QLN~YGFrKv 76 (355)
+|-..||-..
T Consensus 10 ~L~s~G~~~~ 19 (151)
T PF11559_consen 10 QLLSRGYPSD 19 (151)
T ss_pred HHHHCCCCCC
Confidence 4556666544
No 120
>PF10168 Nup88: Nuclear pore component; InterPro: IPR019321 Nup88 can be divided into two structural domains; the N-terminal two-thirds of the protein have no obvious structural motifs. It is, however, where it binds to Nup98; one of the components of the nuclear pore. The C-terminal end is a predicted coiled-coil domain []. Nup88 is over expressed in tumour cells [].
Probab=30.81 E-value=1.4e+02 Score=33.26 Aligned_cols=22 Identities=23% Similarity=0.436 Sum_probs=10.5
Q ss_pred HHHHHHHHHhHHHHHHHHHHhh
Q 018495 151 NKRLEATERRPEQMMAFLYKVV 172 (355)
Q Consensus 151 rqr~q~~EqrqqqMm~FLakvv 172 (355)
.+|++....+|+.|+..+.+++
T Consensus 599 aeR~e~a~d~Qe~L~~R~~~vl 620 (717)
T PF10168_consen 599 AERYEEAKDKQEKLMKRVDRVL 620 (717)
T ss_pred HHHHHHHHHHHHHHHHHHHHHH
Confidence 3344444445555555544443
No 121
>PF10018 Med4: Vitamin-D-receptor interacting Mediator subunit 4; InterPro: IPR019258 The Mediator complex is a coactivator involved in the regulated transcription of nearly all RNA polymerase II-dependent genes. Mediator functions as a bridge to convey information from gene-specific regulatory proteins to the basal RNA polymerase II transcription machinery. The Mediator complex, having a compact conformation in its free form, is recruited to promoters by direct interactions with regulatory proteins and serves for the assembly of a functional preinitiation complex with RNA polymerase II and the general transcription factors. On recruitment the Mediator complex unfolds to an extended conformation and partially surrounds RNA polymerase II, specifically interacting with the unphosphorylated form of the C-terminal domain (CTD) of RNA polymerase II. The Mediator complex dissociates from the RNA polymerase II holoenzyme and stays at the promoter when transcriptional elongation begins. The Mediator complex is composed of at least 31 subunits: MED1, MED4, MED6, MED7, MED8, MED9, MED10, MED11, MED12, MED13, MED13L, MED14, MED15, MED16, MED17, MED18, MED19, MED20, MED21, MED22, MED23, MED24, MED25, MED26, MED27, MED29, MED30, MED31, CCNC, CDK8 and CDC2L6/CDK11. The subunits form at least three structurally distinct submodules. The head and the middle modules interact directly with RNA polymerase II, whereas the elongated tail module interacts with gene-specific regulatory proteins. Mediator containing the CDK8 module is less active than Mediator lacking this module in supporting transcriptional activation. The head module contains: MED6, MED8, MED11, SRB4/MED17, SRB5/MED18, ROX3/MED19, SRB2/MED20 and SRB6/MED22. The middle module contains: MED1, MED4, NUT1/MED5, MED7, CSE2/MED9, NUT2/MED10, SRB7/MED21 and SOH1/MED31. CSE2/MED9 interacts directly with MED4. The tail module contains: MED2, PGD1/MED3, RGR1/MED14, GAL11/MED15 and SIN4/MED16. The CDK8 module contains: MED12, MED13, CCNC and CDK8. Individual preparations of the Mediator complex lacking one or more distinct subunits have been variously termed ARC, CRSP, DRIP, PC2, SMCC and TRAP. Members of this family represent the Med4 subunit of the Mediator (Med) complex [, ]. ; GO: 0001104 RNA polymerase II transcription cofactor activity, 0006357 regulation of transcription from RNA polymerase II promoter, 0016592 mediator complex
Probab=30.67 E-value=2.1e+02 Score=26.22 Aligned_cols=45 Identities=16% Similarity=0.305 Sum_probs=28.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHhh
Q 018495 127 EEIVMEIARLRQEQKSLDEELQGMNKRLEATERRPEQMMAFLYKVV 172 (355)
Q Consensus 127 ~~L~~EIerLKreq~~L~qEL~~Lrqr~q~~EqrqqqMm~FLakvv 172 (355)
..|...|+.| ++++.+..+|..|++.+...+.+++.++.-|..+-
T Consensus 12 ~~L~~~L~~l-~~hq~~~~~I~~L~~e~~~ld~~i~~~~~~L~~~~ 56 (188)
T PF10018_consen 12 DELSSALEEL-QEHQENQARIQQLRAEIEELDEQIRDILKQLKEAR 56 (188)
T ss_pred HHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3455555555 34455577777777777777766666666555543
No 122
>PF14584 DUF4446: Protein of unknown function (DUF4446)
Probab=30.66 E-value=1e+02 Score=27.80 Aligned_cols=40 Identities=23% Similarity=0.351 Sum_probs=27.0
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHH
Q 018495 126 DEEIVMEIARLRQEQKSLDEELQGMNKRLEATERRPEQMM 165 (355)
Q Consensus 126 ~~~L~~EIerLKreq~~L~qEL~~Lrqr~q~~EqrqqqMm 165 (355)
...|+.-+..+.++...+..++.+++++++.++..++..+
T Consensus 41 ~~~lE~~l~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~ 80 (151)
T PF14584_consen 41 GKNLEDLLNELFDQIDELKEELEELEKRIEELEEKLRNCV 80 (151)
T ss_pred cccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcc
Confidence 3466677777777777777777777777776665554433
No 123
>PF06156 DUF972: Protein of unknown function (DUF972); InterPro: IPR010377 FUNCTION: Involved in initiation control of chromosome replication. SUBUNIT: Interacts with both DnaA and DnaN, acting as a bridge between these two proteins. SIMILARITY: Belongs to the YabA family.
Probab=30.58 E-value=1.7e+02 Score=25.01 Aligned_cols=27 Identities=33% Similarity=0.477 Sum_probs=12.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 018495 128 EIVMEIARLRQEQKSLDEELQGMNKRL 154 (355)
Q Consensus 128 ~L~~EIerLKreq~~L~qEL~~Lrqr~ 154 (355)
.|-..|..|.++...|..+|..|++++
T Consensus 5 ~l~~~l~~le~~l~~l~~~~~~LK~~~ 31 (107)
T PF06156_consen 5 ELFDRLDQLEQQLGQLLEELEELKKQL 31 (107)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 344444444444444444444444443
No 124
>PF08776 VASP_tetra: VASP tetramerisation domain; InterPro: IPR014885 Vasodilator-stimulated phosphoprotein (VASP) is an actin cytoskeletal regulatory protein. This region corresponds to the tetramerisation domain which forms a right handed alpha helical coiled coil structure []. ; PDB: 1USE_A 1USD_A.
Probab=30.08 E-value=2.2e+02 Score=20.69 Aligned_cols=24 Identities=29% Similarity=0.556 Sum_probs=13.7
Q ss_pred HHHHHHHHHH-HHHHHHHHHHHHHH
Q 018495 131 MEIARLRQEQ-KSLDEELQGMNKRL 154 (355)
Q Consensus 131 ~EIerLKreq-~~L~qEL~~Lrqr~ 154 (355)
.+++++|++. ..+..||.++++.+
T Consensus 3 ~dle~~KqEIL~EvrkEl~K~K~EI 27 (40)
T PF08776_consen 3 SDLERLKQEILEEVRKELQKVKEEI 27 (40)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred hhHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3566666664 45556666665543
No 125
>PRK13922 rod shape-determining protein MreC; Provisional
Probab=30.08 E-value=1.9e+02 Score=27.70 Aligned_cols=28 Identities=21% Similarity=0.264 Sum_probs=22.3
Q ss_pred ChHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 018495 125 DDEEIVMEIARLRQEQKSLDEELQGMNK 152 (355)
Q Consensus 125 ~~~~L~~EIerLKreq~~L~qEL~~Lrq 152 (355)
....+.+|.++|++++..|..++..+++
T Consensus 70 ~~~~l~~en~~L~~e~~~l~~~~~~~~~ 97 (276)
T PRK13922 70 SLFDLREENEELKKELLELESRLQELEQ 97 (276)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3557888889999999888888887653
No 126
>KOG4591 consensus Uncharacterized conserved protein, contains BTB/POZ domain [General function prediction only]
Probab=30.06 E-value=1e+02 Score=30.03 Aligned_cols=27 Identities=19% Similarity=0.278 Sum_probs=17.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 018495 127 EEIVMEIARLRQEQKSLDEELQGMNKR 153 (355)
Q Consensus 127 ~~L~~EIerLKreq~~L~qEL~~Lrqr 153 (355)
...+.-+.-||++.++|..|+.+++++
T Consensus 6 a~~~d~L~iLkeef~aLQke~~E~~kk 32 (280)
T KOG4591|consen 6 AKKEDHLDILKEEFNALQKEHAELEKK 32 (280)
T ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 344555666677777777776666665
No 127
>COG2433 Uncharacterized conserved protein [Function unknown]
Probab=29.95 E-value=1.1e+02 Score=33.69 Aligned_cols=37 Identities=24% Similarity=0.465 Sum_probs=20.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHH
Q 018495 128 EIVMEIARLRQEQKSLDEELQGMNKRLEATERRPEQM 164 (355)
Q Consensus 128 ~L~~EIerLKreq~~L~qEL~~Lrqr~q~~EqrqqqM 164 (355)
.+...+++|++++..|..+|.+|+..++.++.++.++
T Consensus 426 ~~~~~ve~l~~e~~~L~~~~ee~k~eie~L~~~l~~~ 462 (652)
T COG2433 426 KLEETVERLEEENSELKRELEELKREIEKLESELERF 462 (652)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4455566666666666666666665555555444433
No 128
>PF14193 DUF4315: Domain of unknown function (DUF4315)
Probab=29.76 E-value=3.1e+02 Score=22.54 Aligned_cols=54 Identities=15% Similarity=0.300 Sum_probs=30.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHhhcCCCcHHHHHh
Q 018495 128 EIVMEIARLRQEQKSLDEELQGMNKRLEATERRPEQMMAFLYKVVEDPDLLPRIIM 183 (355)
Q Consensus 128 ~L~~EIerLKreq~~L~qEL~~Lrqr~q~~EqrqqqMm~FLakvvqnP~fl~~li~ 183 (355)
.|..+|++.+.....+...|..|..+....|.. +|+.-+..+-=.|.=|..|+.
T Consensus 5 Ki~~eieK~k~Kiae~Q~rlK~Le~qk~E~EN~--EIv~~VR~~~mtp~eL~~~L~ 58 (83)
T PF14193_consen 5 KIRAEIEKTKEKIAELQARLKELEAQKTEAENL--EIVQMVRSMKMTPEELAAFLR 58 (83)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH--HHHHHHHHcCCCHHHHHHHHH
Confidence 456677777777777777776666665555432 344444444434544444443
No 129
>KOG4571 consensus Activating transcription factor 4 [Transcription]
Probab=29.66 E-value=1.3e+02 Score=30.25 Aligned_cols=7 Identities=14% Similarity=-0.410 Sum_probs=3.6
Q ss_pred ceEeccc
Q 018495 81 WEFANEW 87 (355)
Q Consensus 81 ~eF~He~ 87 (355)
|.+..+.
T Consensus 144 ~~~s~~~ 150 (294)
T KOG4571|consen 144 PFCSLEL 150 (294)
T ss_pred cccccCC
Confidence 5555554
No 130
>PF07106 TBPIP: Tat binding protein 1(TBP-1)-interacting protein (TBPIP); InterPro: IPR010776 This family consists of several eukaryotic TBP-1 interacting protein (TBPIP) sequences. TBP-1 has been demonstrated to interact with the human immunodeficiency virus type 1 (HIV-1) viral protein Tat, then modulate the essential replication process of HIV. In addition, TBP-1 has been shown to be a component of the 26S proteasome, a basic multiprotein complex that degrades ubiquitinated proteins in an ATP-dependent fashion. Human TBPIP interacts with human TBP-1 then modulates the inhibitory action of human TBP-1 on HIV-Tat-mediated transactivation [].
Probab=29.58 E-value=2.4e+02 Score=25.05 Aligned_cols=46 Identities=33% Similarity=0.441 Sum_probs=23.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHH---------HHHHHHHHHhHHHHHHHHHHhhc
Q 018495 128 EIVMEIARLRQEQKSLDEELQGM---------NKRLEATERRPEQMMAFLYKVVE 173 (355)
Q Consensus 128 ~L~~EIerLKreq~~L~qEL~~L---------rqr~q~~EqrqqqMm~FLakvvq 173 (355)
.|..++..|+.+...|..||..| +..+..++..+.+|-.-|..+-+
T Consensus 83 ~L~~el~~l~~~~k~l~~eL~~L~~~~t~~el~~~i~~l~~e~~~l~~kL~~l~~ 137 (169)
T PF07106_consen 83 ELREELAELKKEVKSLEAELASLSSEPTNEELREEIEELEEEIEELEEKLEKLRS 137 (169)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 33344444444444444444443 23445555666666666666554
No 131
>PRK06342 transcription elongation factor regulatory protein; Validated
Probab=29.30 E-value=1.2e+02 Score=27.52 Aligned_cols=13 Identities=15% Similarity=0.184 Sum_probs=7.2
Q ss_pred ChHHHHHHHHHHH
Q 018495 125 DDEEIVMEIARLR 137 (355)
Q Consensus 125 ~~~~L~~EIerLK 137 (355)
+...|..|++.|+
T Consensus 35 G~~~L~~El~~L~ 47 (160)
T PRK06342 35 GLKALEDQLAQAR 47 (160)
T ss_pred HHHHHHHHHHHHH
Confidence 3445556666665
No 132
>PF04420 CHD5: CHD5-like protein; InterPro: IPR007514 Members of this family are probably coiled-coil proteins that are similar to the CHD5 (Congenital heart disease 5) protein. The exact molecular function of these eukaryotic proteins is unknown.; PDB: 3SJA_H 3SJC_D 3SJB_D 3ZS8_D 3VLC_E.
Probab=29.03 E-value=1.3e+02 Score=27.17 Aligned_cols=41 Identities=24% Similarity=0.389 Sum_probs=24.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHhh
Q 018495 132 EIARLRQEQKSLDEELQGMNKRLEATERRPEQMMAFLYKVV 172 (355)
Q Consensus 132 EIerLKreq~~L~qEL~~Lrqr~q~~EqrqqqMm~FLakvv 172 (355)
+-.+|+|+.+.|..||.++++.+.......+.++..+..++
T Consensus 67 kwaKl~Rk~~kl~~el~~~~~~~~~~~~~~~~~~~~~~~~~ 107 (161)
T PF04420_consen 67 KWAKLNRKLDKLEEELEKLNKSLSSEKSSFDKSLSKVLWVL 107 (161)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHTCHHHHHHHHHH----
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 44556666667777777777776666666666666555544
No 133
>PF07334 IFP_35_N: Interferon-induced 35 kDa protein (IFP 35) N-terminus; InterPro: IPR009938 This entry represents the N terminus of interferon-induced 35 kDa protein (IFP 35) (approximately 80 residues long), which contains a leucine zipper motif in an alpha helical configuration []. This group of proteins also includes N-myc-interactor (Nmi), a homologous interferon-induced protein.
Probab=28.95 E-value=1.2e+02 Score=24.81 Aligned_cols=24 Identities=29% Similarity=0.537 Sum_probs=16.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHH
Q 018495 133 IARLRQEQKSLDEELQGMNKRLEA 156 (355)
Q Consensus 133 IerLKreq~~L~qEL~~Lrqr~q~ 156 (355)
|..|.+++..|..||++++..++.
T Consensus 2 i~ei~eEn~~Lk~eiqkle~ELq~ 25 (76)
T PF07334_consen 2 IHEIQEENARLKEEIQKLEAELQQ 25 (76)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHH
Confidence 456777777777777777655543
No 134
>PRK11377 dihydroxyacetone kinase subunit M; Provisional
Probab=28.86 E-value=1.6e+02 Score=31.20 Aligned_cols=57 Identities=21% Similarity=0.211 Sum_probs=43.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHhHHHHHHHHHHhhcCCCcHHHHHhh
Q 018495 128 EIVMEIARLRQEQKSLDEELQGMNKRLEAT-ERRPEQMMAFLYKVVEDPDLLPRIIME 184 (355)
Q Consensus 128 ~L~~EIerLKreq~~L~qEL~~Lrqr~q~~-EqrqqqMm~FLakvvqnP~fl~~li~q 184 (355)
..+.|+++|++-.....+||..|+++.... ......|+..-.-+++||.|+.++...
T Consensus 278 ~~e~E~~Rl~~Al~~a~~eL~~l~~~~~~~~g~~~a~If~ah~~lL~D~~l~~~v~~~ 335 (473)
T PRK11377 278 TVEEEQERLRQAIDFTLLDLMTLTAKAEASGLDDIAAIFSGHHTLLDDPELLAAASER 335 (473)
T ss_pred CHHHHHHHHHHHHHHHHHHHHHHHHHhhhhcChHHHHHHHHHHHHhCCHHHHHHHHHH
Confidence 467899999999999999999998876432 223456777777888888888655443
No 135
>PRK06800 fliH flagellar assembly protein H; Validated
Probab=28.82 E-value=1.5e+02 Score=28.32 Aligned_cols=21 Identities=38% Similarity=0.624 Sum_probs=10.8
Q ss_pred hHHHHHHHHHHHHHHHHHHHH
Q 018495 126 DEEIVMEIARLRQEQKSLDEE 146 (355)
Q Consensus 126 ~~~L~~EIerLKreq~~L~qE 146 (355)
+..|..++..|+.+++.|..|
T Consensus 47 Q~~L~~e~~~l~~eqQ~l~~e 67 (228)
T PRK06800 47 QKSLHKELNQLRQEQQKLERE 67 (228)
T ss_pred HHHHHHHHHHHHHHHHHHHHH
Confidence 344555555555555555444
No 136
>PF11221 Med21: Subunit 21 of Mediator complex; InterPro: IPR021384 The Mediator complex is a coactivator involved in the regulated transcription of nearly all RNA polymerase II-dependent genes. Mediator functions as a bridge to convey information from gene-specific regulatory proteins to the basal RNA polymerase II transcription machinery. The Mediator complex, having a compact conformation in its free form, is recruited to promoters by direct interactions with regulatory proteins and serves for the assembly of a functional preinitiation complex with RNA polymerase II and the general transcription factors. On recruitment the Mediator complex unfolds to an extended conformation and partially surrounds RNA polymerase II, specifically interacting with the unphosphorylated form of the C-terminal domain (CTD) of RNA polymerase II. The Mediator complex dissociates from the RNA polymerase II holoenzyme and stays at the promoter when transcriptional elongation begins. The Mediator complex is composed of at least 31 subunits: MED1, MED4, MED6, MED7, MED8, MED9, MED10, MED11, MED12, MED13, MED13L, MED14, MED15, MED16, MED17, MED18, MED19, MED20, MED21, MED22, MED23, MED24, MED25, MED26, MED27, MED29, MED30, MED31, CCNC, CDK8 and CDC2L6/CDK11. The subunits form at least three structurally distinct submodules. The head and the middle modules interact directly with RNA polymerase II, whereas the elongated tail module interacts with gene-specific regulatory proteins. Mediator containing the CDK8 module is less active than Mediator lacking this module in supporting transcriptional activation. The head module contains: MED6, MED8, MED11, SRB4/MED17, SRB5/MED18, ROX3/MED19, SRB2/MED20 and SRB6/MED22. The middle module contains: MED1, MED4, NUT1/MED5, MED7, CSE2/MED9, NUT2/MED10, SRB7/MED21 and SOH1/MED31. CSE2/MED9 interacts directly with MED4. The tail module contains: MED2, PGD1/MED3, RGR1/MED14, GAL11/MED15 and SIN4/MED16. The CDK8 module contains: MED12, MED13, CCNC and CDK8. Individual preparations of the Mediator complex lacking one or more distinct subunits have been variously termed ARC, CRSP, DRIP, PC2, SMCC and TRAP. Med21 has been known as Srb7 in yeasts, hSrb7 in humans and Trap 19 in Drosophila. The heterodimer of the two subunits Med7 and Med21 appears to act as a hinge between the middle and the tail regions of Mediator []. ; PDB: 1YKE_B 1YKH_B.
Probab=28.78 E-value=2.1e+02 Score=25.16 Aligned_cols=44 Identities=25% Similarity=0.366 Sum_probs=28.0
Q ss_pred ChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHH
Q 018495 125 DDEEIVMEIARLRQEQKSLDEELQGMNKRLEATERRPEQMMAFL 168 (355)
Q Consensus 125 ~~~~L~~EIerLKreq~~L~qEL~~Lrqr~q~~EqrqqqMm~FL 168 (355)
..+.-...|.+|.+++....+|+....++-+..-.+++.++..+
T Consensus 98 see~Q~~~i~~L~~E~~~~~~el~~~v~e~e~ll~~v~~~i~~i 141 (144)
T PF11221_consen 98 SEEEQLKRIKELEEENEEAEEELQEAVKEAEELLKQVQELIREI 141 (144)
T ss_dssp -HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTT
T ss_pred CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34455577888888888888887776666555555555555443
No 137
>KOG4005 consensus Transcription factor XBP-1 [Transcription]
Probab=28.69 E-value=1.7e+02 Score=28.97 Aligned_cols=43 Identities=23% Similarity=0.241 Sum_probs=32.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHH
Q 018495 127 EEIVMEIARLRQEQKSLDEELQGMNKRLEATERRPEQMMAFLY 169 (355)
Q Consensus 127 ~~L~~EIerLKreq~~L~qEL~~Lrqr~q~~EqrqqqMm~FLa 169 (355)
++|+.+|..|.+++..|..|-..||.+.+.+--+.+++.+.|.
T Consensus 93 ~eme~~i~dL~een~~L~~en~~Lr~~n~~L~~~n~el~~~le 135 (292)
T KOG4005|consen 93 EEMEYEIKDLTEENEILQNENDSLRAINESLLAKNHELDSELE 135 (292)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHH
Confidence 4788889999999999999988888776666555555555554
No 138
>PF04156 IncA: IncA protein; InterPro: IPR007285 Chlamydia trachomatis is an obligate intracellular bacterium that develops within a parasitophorous vacuole termed an inclusion. The inclusion is nonfusogenic with lysosomes but intercepts lipids from a host cell exocytic pathway. Initiation of chlamydial development is concurrent with modification of the inclusion membrane by a set of C. trachomatis-encoded proteins collectively designated Incs. One of these Incs, IncA (Inclusion membrane protein A), is functionally associated with the homotypic fusion of inclusions [].
Probab=28.68 E-value=2.1e+02 Score=25.64 Aligned_cols=6 Identities=33% Similarity=0.772 Sum_probs=2.1
Q ss_pred HHHHHH
Q 018495 153 RLEATE 158 (355)
Q Consensus 153 r~q~~E 158 (355)
+++..+
T Consensus 131 ~l~~l~ 136 (191)
T PF04156_consen 131 RLDSLD 136 (191)
T ss_pred HHHHHH
Confidence 333333
No 139
>PRK11637 AmiB activator; Provisional
Probab=28.66 E-value=2e+02 Score=29.51 Aligned_cols=26 Identities=12% Similarity=0.272 Sum_probs=12.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHH
Q 018495 127 EEIVMEIARLRQEQKSLDEELQGMNK 152 (355)
Q Consensus 127 ~~L~~EIerLKreq~~L~qEL~~Lrq 152 (355)
..+..+|+.|+.+...+..+|..+++
T Consensus 99 ~~~~~ei~~l~~eI~~~q~~l~~~~~ 124 (428)
T PRK11637 99 NQLNKQIDELNASIAKLEQQQAAQER 124 (428)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34445555555555555555444433
No 140
>PF05064 Nsp1_C: Nsp1-like C-terminal region; InterPro: IPR007758 The NSP1-like protein appears to be an essential component of the nuclear pore complex, for example preribosome nuclear export requires the Nup82p-Nup159p-Nsp1p complex. The C-terminal of Nsp1 is involved in binding Nup82 [], probably via coiled-coil formation [, ]. The family is related to the rotavirus nonstructural protein NSP1 which is the least conserved protein in the rotavirus genome. Its function in the replication process is not fully understood.; GO: 0017056 structural constituent of nuclear pore, 0005643 nuclear pore; PDB: 3T97_C.
Probab=28.32 E-value=63 Score=27.63 Aligned_cols=28 Identities=29% Similarity=0.444 Sum_probs=14.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 018495 128 EIVMEIARLRQEQKSLDEELQGMNKRLE 155 (355)
Q Consensus 128 ~L~~EIerLKreq~~L~qEL~~Lrqr~q 155 (355)
.|..++.+++..+..|.++|.-+..++.
T Consensus 61 ~L~~~v~~~~~~Q~~ld~~L~~ie~qQ~ 88 (116)
T PF05064_consen 61 KLYSEVQKAESEQKRLDQELDFIEAQQK 88 (116)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4445555555555555555554444443
No 141
>PHA01750 hypothetical protein
Probab=28.17 E-value=1.4e+02 Score=23.95 Aligned_cols=25 Identities=16% Similarity=0.324 Sum_probs=12.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHhH
Q 018495 137 RQEQKSLDEELQGMNKRLEATERRP 161 (355)
Q Consensus 137 Kreq~~L~qEL~~Lrqr~q~~Eqrq 161 (355)
++|...|..|+++++.+++..+++.
T Consensus 41 ~~ELdNL~~ei~~~kikqDnl~~qv 65 (75)
T PHA01750 41 NSELDNLKTEIEELKIKQDELSRQV 65 (75)
T ss_pred HHHHHHHHHHHHHHHHhHHHHHHHH
Confidence 4455555555555555555544433
No 142
>PF02388 FemAB: FemAB family; InterPro: IPR003447 The femAB operon codes for two nearly identical approximately 50kDa proteins involved in the formation of the Staphylococcal pentaglycine interpeptide bridge in peptidoglycan []. These proteins are also considered as a factor influencing the level of methicillin resistance [].; GO: 0016755 transferase activity, transferring amino-acyl groups; PDB: 1XE4_A 1NE9_A 3GKR_A 1XIX_A 1P4N_A 1XF8_A 1LRZ_A.
Probab=27.59 E-value=2.2e+02 Score=29.13 Aligned_cols=14 Identities=29% Similarity=0.743 Sum_probs=7.8
Q ss_pred hHHHhhhcccCccc
Q 018495 62 SSFVRQLNTYGFRK 75 (355)
Q Consensus 62 sSFvRQLN~YGFrK 75 (355)
..++..|...||+.
T Consensus 124 ~~~~~~l~~~G~~~ 137 (406)
T PF02388_consen 124 DELIENLKALGFRH 137 (406)
T ss_dssp THHHHHHHHTT-CC
T ss_pred HHHHHHHHhcCcee
Confidence 45566666666664
No 143
>COG5613 Uncharacterized conserved protein [Function unknown]
Probab=27.45 E-value=1.6e+02 Score=30.57 Aligned_cols=50 Identities=6% Similarity=0.233 Sum_probs=39.1
Q ss_pred CChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHhhc
Q 018495 124 LDDEEIVMEIARLRQEQKSLDEELQGMNKRLEATERRPEQMMAFLYKVVE 173 (355)
Q Consensus 124 ~~~~~L~~EIerLKreq~~L~qEL~~Lrqr~q~~EqrqqqMm~FLakvvq 173 (355)
.+...++..++.++-++..|..-+.+|++++....++.+++|.-...+++
T Consensus 330 ae~a~~qad~q~~~ad~~~Lq~iierlkeelk~e~e~~qe~me~ifamLq 379 (400)
T COG5613 330 AEAAQLQADSQLAAADVQNLQRIIERLKEELKLELEKAQEEMENIFAMLQ 379 (400)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 35667788888888888888888888888887777777777777666664
No 144
>KOG4497 consensus Uncharacterized conserved protein WDR8, contains WD repeats [General function prediction only]
Probab=27.32 E-value=63 Score=33.44 Aligned_cols=35 Identities=20% Similarity=0.249 Sum_probs=26.8
Q ss_pred hHHHHHHHhhcCCCCC----CcEEEcCCCCeEEEeCCch
Q 018495 12 PFVMKTYQMVNDPTTD----SLISWGKANNSFIVVDPLD 46 (355)
Q Consensus 12 ~Fl~KLy~mLed~~~~----~iIsWs~~G~sFvV~d~~~ 46 (355)
-|..|-|.+|..-..+ .-|.|+|||+..+|||.-.
T Consensus 162 i~~c~~W~ll~~f~~dT~DltgieWsPdg~~laVwd~~L 200 (447)
T KOG4497|consen 162 ISSCKAWILLKEFKLDTIDLTGIEWSPDGNWLAVWDNVL 200 (447)
T ss_pred HHhhHHHHHHHhcCCCcccccCceECCCCcEEEEecchh
Confidence 4567788888765544 3499999999999998643
No 145
>COG3074 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=27.11 E-value=2.3e+02 Score=23.04 Aligned_cols=35 Identities=11% Similarity=0.284 Sum_probs=18.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHH
Q 018495 128 EIVMEIARLRQEQKSLDEELQGMNKRLEATERRPE 162 (355)
Q Consensus 128 ~L~~EIerLKreq~~L~qEL~~Lrqr~q~~Eqrqq 162 (355)
.|..|+..+++...+|.+|-..+++.+..-+.++.
T Consensus 36 ~l~~e~q~~q~~reaL~~eneqlk~e~~~WQerlr 70 (79)
T COG3074 36 SLSQEVQNAQHQREALERENEQLKEEQNGWQERLR 70 (79)
T ss_pred HhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34445555555555666666666655555444443
No 146
>PF07407 Seadorna_VP6: Seadornavirus VP6 protein; InterPro: IPR009982 This family consists of several VP6 proteins from the Banna virus as well as a related protein VP5 from the Kadipiro virus. Members of this family are typically of around 420 residues in length. The function of this family is unknown.
Probab=27.11 E-value=2.3e+02 Score=29.28 Aligned_cols=40 Identities=15% Similarity=0.271 Sum_probs=25.9
Q ss_pred CCChHHHHHHHHHHHHHHHHHHHHHHH--HHHHHHHHHHhHH
Q 018495 123 DLDDEEIVMEIARLRQEQKSLDEELQG--MNKRLEATERRPE 162 (355)
Q Consensus 123 ~~~~~~L~~EIerLKreq~~L~qEL~~--Lrqr~q~~Eqrqq 162 (355)
..++..|..|++.|+.+...|+.|+.+ +-++++-.|...+
T Consensus 38 r~EN~~LKkEN~~Lk~eVerLE~e~l~s~V~E~vet~dv~~d 79 (420)
T PF07407_consen 38 RMENHSLKKENNDLKIEVERLENEMLRSHVCEDVETNDVIYD 79 (420)
T ss_pred HHHhHHHHHHHHHHHHHHHHHHHHhhhhhhhhHHHHHHHHHH
Confidence 356778888888888888888777765 3344433333333
No 147
>cd00632 Prefoldin_beta Prefoldin beta; Prefoldin is a hexameric molecular chaperone complex, composed of two evolutionarily related subunits (alpha and beta), which are found in both eukaryotes and archaea. Prefoldin binds and stabilizes newly synthesized polypeptides allowing them to fold correctly. The hexameric structure consists of a double beta barrel assembly with six protruding coiled-coils. The alpha prefoldin subunits have two beta hairpin structures while the beta prefoldin subunits (this CD) have only one hairpin that is most similar to the second hairpin of the alpha subunit. The prefoldin hexamer consists of two alpha and four beta subunits and is assembled from the beta hairpins of all six subunits. The alpha subunits initially dimerize providing a structural nucleus for the assembly of the beta subunits. In archaea, there is usually only one gene for each subunit while in eukaryotes there two or more paralogous genes encoding each subunit adding heterogeneity to the st
Probab=26.94 E-value=2.3e+02 Score=23.35 Aligned_cols=29 Identities=24% Similarity=0.582 Sum_probs=13.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 018495 128 EIVMEIARLRQEQKSLDEELQGMNKRLEA 156 (355)
Q Consensus 128 ~L~~EIerLKreq~~L~qEL~~Lrqr~q~ 156 (355)
.+..++++|..+...+..++..++.++..
T Consensus 74 ~le~~i~~l~~~~~~l~~~~~elk~~l~~ 102 (105)
T cd00632 74 TIELRIKRLERQEEDLQEKLKELQEKIQQ 102 (105)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34444444444444444444444444433
No 148
>COG1422 Predicted membrane protein [Function unknown]
Probab=26.80 E-value=2e+02 Score=27.52 Aligned_cols=40 Identities=13% Similarity=0.273 Sum_probs=25.8
Q ss_pred HHHHHHHHHHHHHHHHHH-----HHHHHHHHHHHHHHhHHHHHHH
Q 018495 128 EIVMEIARLRQEQKSLDE-----ELQGMNKRLEATERRPEQMMAF 167 (355)
Q Consensus 128 ~L~~EIerLKreq~~L~q-----EL~~Lrqr~q~~EqrqqqMm~F 167 (355)
++..+++.++++..+... .|.+|++++.++.+.|.+||.-
T Consensus 76 ~~qk~m~efq~e~~eA~~~~d~~~lkkLq~~qmem~~~Q~elmk~ 120 (201)
T COG1422 76 ELQKMMKEFQKEFREAQESGDMKKLKKLQEKQMEMMDDQRELMKM 120 (201)
T ss_pred HHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 555667777777666655 3666777777776666666543
No 149
>cd00584 Prefoldin_alpha Prefoldin alpha subunit; Prefoldin is a hexameric molecular chaperone complex, found in both eukaryotes and archaea, that binds and stabilizes newly synthesized polypeptides allowing them to fold correctly. The complex contains two alpha and four beta subunits, the two subunits being evolutionarily related. In archaea, there is usually only one gene for each subunit while in eukaryotes there two or more paralogous genes encoding each subunit adding heterogeneity to the structure of the hexamer. The structure of the complex consists of a double beta barrel assembly with six protruding coiled-coils.
Probab=26.68 E-value=3e+02 Score=23.19 Aligned_cols=32 Identities=19% Similarity=0.320 Sum_probs=14.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 018495 128 EIVMEIARLRQEQKSLDEELQGMNKRLEATER 159 (355)
Q Consensus 128 ~L~~EIerLKreq~~L~qEL~~Lrqr~q~~Eq 159 (355)
-+...++.|++....|..++..+++++...+.
T Consensus 91 ~l~~r~~~l~~~~~~l~~~l~~l~~~~~~~~~ 122 (129)
T cd00584 91 FLDKKIEELTKQIEKLQKELAKLKDQINTLEA 122 (129)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33444444444444444444444444444333
No 150
>PF04880 NUDE_C: NUDE protein, C-terminal conserved region; InterPro: IPR006964 This domain represents the C-terminal conserved region of NUDE proteins. Emericella nidulans (Aspergillus nidulans) NUDE, acts in the cytoplasmic dynein/dynactin pathway and is required for distribution of nuclei []. It is a homologue of the nuclear distribution protein RO11 of Neurospora crassa. NUDE interacts with the NUDF via an N-terminal coiled coil domain; this is the only domain which is absolutely required for NUDE function.; PDB: 2V66_B 2V71_B.
Probab=26.67 E-value=32 Score=31.70 Aligned_cols=19 Identities=16% Similarity=0.249 Sum_probs=7.8
Q ss_pred HHHHHHHHHHHHHHHHHHH
Q 018495 129 IVMEIARLRQEQKSLDEEL 147 (355)
Q Consensus 129 L~~EIerLKreq~~L~qEL 147 (355)
|+..+.+--+.+..|+.||
T Consensus 5 ~EsklN~AIERnalLE~EL 23 (166)
T PF04880_consen 5 FESKLNQAIERNALLESEL 23 (166)
T ss_dssp HHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhHHHHHHH
Confidence 3333333334444444444
No 151
>PF09726 Macoilin: Transmembrane protein; InterPro: IPR019130 This entry represents the multi-pass transmembrane protein Macoilin, which is highly conserved in eukaryotes. ; GO: 0016021 integral to membrane
Probab=26.61 E-value=1.3e+02 Score=33.57 Aligned_cols=18 Identities=22% Similarity=0.385 Sum_probs=12.1
Q ss_pred HHHHHHHHHHHHHHHHHH
Q 018495 127 EEIVMEIARLRQEQKSLD 144 (355)
Q Consensus 127 ~~L~~EIerLKreq~~L~ 144 (355)
..|+.||++||.|.+...
T Consensus 421 ~rLE~dvkkLraeLq~~R 438 (697)
T PF09726_consen 421 SRLEADVKKLRAELQSSR 438 (697)
T ss_pred HHHHHHHHHHHHHHHhhh
Confidence 367778888877766443
No 152
>PF10168 Nup88: Nuclear pore component; InterPro: IPR019321 Nup88 can be divided into two structural domains; the N-terminal two-thirds of the protein have no obvious structural motifs. It is, however, where it binds to Nup98; one of the components of the nuclear pore. The C-terminal end is a predicted coiled-coil domain []. Nup88 is over expressed in tumour cells [].
Probab=26.41 E-value=2.5e+02 Score=31.43 Aligned_cols=43 Identities=21% Similarity=0.343 Sum_probs=32.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHH
Q 018495 128 EIVMEIARLRQEQKSLDEELQGMNKRLEATERRPEQMMAFLYK 170 (355)
Q Consensus 128 ~L~~EIerLKreq~~L~qEL~~Lrqr~q~~EqrqqqMm~FLak 170 (355)
.+.++++.|+...+.|...+.+++++|+.+.+|.+.|+.-+..
T Consensus 583 ~l~e~~~~l~~~ae~LaeR~e~a~d~Qe~L~~R~~~vl~~l~~ 625 (717)
T PF10168_consen 583 ELQEERKSLRESAEKLAERYEEAKDKQEKLMKRVDRVLQLLNS 625 (717)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 4555566666666677777888889999999999888887744
No 153
>PF12269 zf-CpG_bind_C: CpG binding protein zinc finger C terminal domain; InterPro: IPR022056 This domain family is found in eukaryotes, and is approximately 240 amino acids in length. This domain is the zinc finger domain of a CpG binding DNA methyltransferase protein. It contains a CxxC motif which forms the zinc finger and binds to DNA.
Probab=26.39 E-value=1.6e+02 Score=28.64 Aligned_cols=35 Identities=20% Similarity=0.392 Sum_probs=19.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHhh
Q 018495 131 MEIARLRQEQKSLDEELQGMNKRLEATERRPEQMMAFLYKVV 172 (355)
Q Consensus 131 ~EIerLKreq~~L~qEL~~Lrqr~q~~EqrqqqMm~FLakvv 172 (355)
..++++++++..... +++.++++.+.|..|++++-
T Consensus 29 ~~Le~Ir~kq~~v~~-------~l~eLe~~~~el~~~i~~~k 63 (236)
T PF12269_consen 29 KLLEEIRKKQQKVRN-------RLQELEKRFKELEAIIARAK 63 (236)
T ss_pred HHHHHHHHHHHHHHH-------HHHHHHHHHHHHHHHHHHHH
Confidence 344455555555444 44555555566777777654
No 154
>PRK13169 DNA replication intiation control protein YabA; Reviewed
Probab=26.32 E-value=1.5e+02 Score=25.56 Aligned_cols=27 Identities=33% Similarity=0.394 Sum_probs=12.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 018495 128 EIVMEIARLRQEQKSLDEELQGMNKRL 154 (355)
Q Consensus 128 ~L~~EIerLKreq~~L~qEL~~Lrqr~ 154 (355)
+|-..+..|.++...|..||..|++++
T Consensus 5 elfd~l~~le~~l~~l~~el~~LK~~~ 31 (110)
T PRK13169 5 EIFDALDDLEQNLGVLLKELGALKKQL 31 (110)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 344444444444444444444444443
No 155
>COG1730 GIM5 Predicted prefoldin, molecular chaperone implicated in de novo protein folding [Posttranslational modification, protein turnover, chaperones]
Probab=26.31 E-value=2.6e+02 Score=25.19 Aligned_cols=43 Identities=16% Similarity=0.211 Sum_probs=23.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHH
Q 018495 128 EIVMEIARLRQEQKSLDEELQGMNKRLEATERRPEQMMAFLYK 170 (355)
Q Consensus 128 ~L~~EIerLKreq~~L~qEL~~Lrqr~q~~EqrqqqMm~FLak 170 (355)
..+.-++.|++..+.|...+..|.+.++.+.+++.++.+-+..
T Consensus 91 ~~~eAie~l~k~~~~l~~~~~~l~~~l~~l~~~~~~l~~~~q~ 133 (145)
T COG1730 91 SADEAIEFLKKRIEELEKAIEKLQQALAELAQRIEQLEQEAQQ 133 (145)
T ss_pred cHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3344555566555555555555555555555555555444443
No 156
>cd00584 Prefoldin_alpha Prefoldin alpha subunit; Prefoldin is a hexameric molecular chaperone complex, found in both eukaryotes and archaea, that binds and stabilizes newly synthesized polypeptides allowing them to fold correctly. The complex contains two alpha and four beta subunits, the two subunits being evolutionarily related. In archaea, there is usually only one gene for each subunit while in eukaryotes there two or more paralogous genes encoding each subunit adding heterogeneity to the structure of the hexamer. The structure of the complex consists of a double beta barrel assembly with six protruding coiled-coils.
Probab=26.24 E-value=1.9e+02 Score=24.35 Aligned_cols=45 Identities=16% Similarity=0.237 Sum_probs=37.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHhh
Q 018495 128 EIVMEIARLRQEQKSLDEELQGMNKRLEATERRPEQMMAFLYKVV 172 (355)
Q Consensus 128 ~L~~EIerLKreq~~L~qEL~~Lrqr~q~~EqrqqqMm~FLakvv 172 (355)
.+..-++.|++....|...+..+.+.+......++.+..-+..+.
T Consensus 84 ~~~eA~~~l~~r~~~l~~~~~~l~~~l~~l~~~~~~~~~~l~~~~ 128 (129)
T cd00584 84 DLEEAIEFLDKKIEELTKQIEKLQKELAKLKDQINTLEAELQELQ 128 (129)
T ss_pred cHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 566778899999999999999999999998888888877776543
No 157
>TIGR01242 26Sp45 26S proteasome subunit P45 family. Many proteins may score above the trusted cutoff because an internal
Probab=26.07 E-value=1.6e+02 Score=29.20 Aligned_cols=41 Identities=24% Similarity=0.430 Sum_probs=19.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHhhcCCCcH
Q 018495 131 MEIARLRQEQKSLDEELQGMNKRLEATERRPEQMMAFLYKVVEDPDLL 178 (355)
Q Consensus 131 ~EIerLKreq~~L~qEL~~Lrqr~q~~EqrqqqMm~FLakvvqnP~fl 178 (355)
.+++.|+.+...+..|+..+ ++.++++...|.++-..|..+
T Consensus 6 ~~~~~~~~~~~~~~~~~~~~-------~~~~~~~~~~~~~~~~~~~~~ 46 (364)
T TIGR01242 6 VRIRKLEDEKRSLEKEKIRL-------ERELERLRSEIERLRSPPLIV 46 (364)
T ss_pred HHHHHHHHHHHHHHHHHHHH-------HHHHHHHHHHHHHHhCCCeEE
Confidence 44444544444444444433 334444445555554444443
No 158
>PF12004 DUF3498: Domain of unknown function (DUF3498); InterPro: IPR021887 This presumed domain is functionally uncharacterised. This domain is found in eukaryotes. This domain is typically between 433 to 538 amino acids in length. This domain is found associated with PF00616 from PFAM, PF00168 from PFAM. This domain has two conserved sequence motifs: DLQ and PLSFQNP. ; PDB: 3BXJ_B.
Probab=26.02 E-value=22 Score=37.87 Aligned_cols=46 Identities=15% Similarity=0.367 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHH-HHHHHHhhc
Q 018495 128 EIVMEIARLRQEQKSLDEELQGMNKRLEATERRPEQM-MAFLYKVVE 173 (355)
Q Consensus 128 ~L~~EIerLKreq~~L~qEL~~Lrqr~q~~EqrqqqM-m~FLakvvq 173 (355)
..+.||..||+...++...|.+-+.|+..+|+..++| ++|-+++-+
T Consensus 373 ~YEqEI~~LkErL~~S~rkLeEyErrLl~QEqqt~Kll~qyq~RLed 419 (495)
T PF12004_consen 373 KYEQEIQSLKERLRMSHRKLEEYERRLLSQEQQTQKLLLQYQARLED 419 (495)
T ss_dssp -----------------------------------------------
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHhhhh
Confidence 4566888888888888888888777887777666655 566555543
No 159
>PRK12765 flagellar capping protein; Provisional
Probab=25.98 E-value=2.5e+02 Score=30.64 Aligned_cols=56 Identities=20% Similarity=0.201 Sum_probs=34.3
Q ss_pred ChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHhhcCCCcHHHHHh
Q 018495 125 DDEEIVMEIARLRQEQKSLDEELQGMNKRLEATERRPEQMMAFLYKVVEDPDLLPRIIM 183 (355)
Q Consensus 125 ~~~~L~~EIerLKreq~~L~qEL~~Lrqr~q~~EqrqqqMm~FLakvvqnP~fl~~li~ 183 (355)
-...|..++++|.+++..+...|..+..|+..+--.+..||.-|.... .+|.+++.
T Consensus 533 ~~~~l~~~~~~l~~~~~~~~~rl~~~~~r~~~qf~alD~~i~~l~~t~---s~l~~~~~ 588 (595)
T PRK12765 533 YDESLTNEIKSLTTSKESTQELIDTKYETMANKWLQYDSIIAKLEQQF---STLKNMIN 588 (595)
T ss_pred hhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHH---HHHHHHHH
Confidence 345777777777777777777777766666655444555555554444 24444443
No 160
>PF04111 APG6: Autophagy protein Apg6; InterPro: IPR007243 Macroautophagy is a bulk degradation process induced by starvation in eukaryotic cells. In yeast, 15 Apg proteins coordinate the formation of autophagosomes. No molecule involved in autophagy has yet been identified in higher eukaryotes []. The pre-autophagosomal structure contains at least five Apg proteins: Apg1p, Apg2p, Apg5p, Aut7p/Apg8p and Apg16p. It is found in the vacuole []. The C-terminal glycine of Apg12p is conjugated to a lysine residue of Apg5p via an isopeptide bond. During autophagy, cytoplasmic components are enclosed in autophagosomes and delivered to lysosomes/vacuoles. Auotphagy protein 16 (Apg16) has been shown to be bind to Apg5 and is required for the function of the Apg12p-Apg5p conjugate []. Autophagy protein 5 (Apg5) is directly required for the import of aminopeptidase I via the cytoplasm-to-vacuole targeting pathway []. Apg6/Vps30p has two distinct functions in the autophagic process, either associated with the membrane or in a retrieval step of the carboxypeptidase Y sorting pathway [].; GO: 0006914 autophagy; PDB: 3Q8T_A 3VP7_A 4DDP_A.
Probab=25.81 E-value=2.5e+02 Score=28.09 Aligned_cols=34 Identities=32% Similarity=0.650 Sum_probs=22.6
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 018495 126 DEEIVMEIARLRQEQKSLDEELQGMNKRLEATER 159 (355)
Q Consensus 126 ~~~L~~EIerLKreq~~L~qEL~~Lrqr~q~~Eq 159 (355)
...+..|++.|.++...|.+|+..++.+...+++
T Consensus 59 e~~l~~eL~~LE~e~~~l~~el~~le~e~~~l~~ 92 (314)
T PF04111_consen 59 EEELLQELEELEKEREELDQELEELEEELEELDE 92 (314)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3466677777777777777777777666555443
No 161
>PF11471 Sugarporin_N: Maltoporin periplasmic N-terminal extension; InterPro: IPR021570 This N-terminal domain is found in members of the sugar porin family 1.B.3 from TC, They are related to LamB - the well characterised maltoporin of Escherichia coli for which the three-dimensional structures with and without its substrate have been obtained by X-ray diffraction. The protein consists of an 18 beta-stranded beta-barrel in contrast to proteins of the general bacterial porin family (GBP) and the Rhodobacter PorCa Porin (RPP) family which consist of 16 beta-stranded beta-barrels. Although maltoporin contains a wider beta-barrel than the porins of the GBP and RPP families (1.B.1 from TC and 1.B.7 from TC), it exhibits a narrower channel, showing only 5% of the ionic conductance of the latter porins.
Probab=25.74 E-value=1.5e+02 Score=22.89 Aligned_cols=27 Identities=22% Similarity=0.291 Sum_probs=12.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 018495 128 EIVMEIARLRQEQKSLDEELQGMNKRL 154 (355)
Q Consensus 128 ~L~~EIerLKreq~~L~qEL~~Lrqr~ 154 (355)
.++..++.|.++.+..++++...+.+.
T Consensus 29 tiEqRLa~LE~rL~~ae~ra~~ae~~~ 55 (60)
T PF11471_consen 29 TIEQRLAALEQRLQAAEQRAQAAEARA 55 (60)
T ss_pred CHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 345555544444444444444444333
No 162
>KOG1760 consensus Molecular chaperone Prefoldin, subunit 4 [Posttranslational modification, protein turnover, chaperones]
Probab=25.54 E-value=3.4e+02 Score=24.29 Aligned_cols=48 Identities=19% Similarity=0.386 Sum_probs=38.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHhhcCC
Q 018495 128 EIVMEIARLRQEQKSLDEELQGMNKRLEATERRPEQMMAFLYKVVEDP 175 (355)
Q Consensus 128 ~L~~EIerLKreq~~L~qEL~~Lrqr~q~~EqrqqqMm~FLakvvqnP 175 (355)
.+..-.+.|++....|..+|..++.+++..+.+++.|=.-|..-+.+.
T Consensus 78 ~~~~~~~~LEe~ke~l~k~i~~les~~e~I~~~m~~LK~~LYaKFgdn 125 (131)
T KOG1760|consen 78 KLDKLQDQLEEKKETLEKEIEELESELESISARMDELKKVLYAKFGDN 125 (131)
T ss_pred cHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccc
Confidence 344556677888889999999999999999999998888888777654
No 163
>COG1730 GIM5 Predicted prefoldin, molecular chaperone implicated in de novo protein folding [Posttranslational modification, protein turnover, chaperones]
Probab=25.51 E-value=2.5e+02 Score=25.36 Aligned_cols=43 Identities=21% Similarity=0.279 Sum_probs=33.1
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHH
Q 018495 126 DEEIVMEIARLRQEQKSLDEELQGMNKRLEATERRPEQMMAFL 168 (355)
Q Consensus 126 ~~~L~~EIerLKreq~~L~qEL~~Lrqr~q~~EqrqqqMm~FL 168 (355)
-+-|..+++.|++....|.++|..|-+++...++..+++.+=.
T Consensus 96 ie~l~k~~~~l~~~~~~l~~~l~~l~~~~~~l~~~~q~~~q~~ 138 (145)
T COG1730 96 IEFLKKRIEELEKAIEKLQQALAELAQRIEQLEQEAQQLQQKQ 138 (145)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3467788999999999999999888888877776666655443
No 164
>PF13874 Nup54: Nucleoporin complex subunit 54; PDB: 3T97_B.
Probab=25.46 E-value=3.3e+02 Score=23.84 Aligned_cols=39 Identities=15% Similarity=0.249 Sum_probs=18.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHH
Q 018495 128 EIVMEIARLRQEQKSLDEELQGMNKRLEATERRPEQMMA 166 (355)
Q Consensus 128 ~L~~EIerLKreq~~L~qEL~~Lrqr~q~~EqrqqqMm~ 166 (355)
.+..+++.|++........|..+++++..+.+++=+++.
T Consensus 55 ~i~~~l~~L~~~~~~~~~rl~~~r~r~~~L~hR~l~v~~ 93 (141)
T PF13874_consen 55 EINDKLEELQKHDLETSARLEEARRRHQELSHRLLRVLR 93 (141)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 344445555444444555555555555555444433333
No 165
>PF15058 Speriolin_N: Speriolin N terminus
Probab=25.44 E-value=1.2e+02 Score=28.99 Aligned_cols=30 Identities=20% Similarity=0.285 Sum_probs=24.1
Q ss_pred ChHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 018495 125 DDEEIVMEIARLRQEQKSLDEELQGMNKRL 154 (355)
Q Consensus 125 ~~~~L~~EIerLKreq~~L~qEL~~Lrqr~ 154 (355)
..+++..+|++|-+|++.|++.|.-||+.+
T Consensus 6 ~yeGlrhqierLv~ENeeLKKlVrLirEN~ 35 (200)
T PF15058_consen 6 NYEGLRHQIERLVRENEELKKLVRLIRENH 35 (200)
T ss_pred chHHHHHHHHHHHhhhHHHHHHHHHHHHHH
Confidence 456778899999999999988887777654
No 166
>KOG4001 consensus Axonemal dynein light chain [Cytoskeleton]
Probab=25.35 E-value=2.4e+02 Score=27.35 Aligned_cols=39 Identities=26% Similarity=0.419 Sum_probs=31.3
Q ss_pred ChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHH
Q 018495 125 DDEEIVMEIARLRQEQKSLDEELQGMNKRLEATERRPEQ 163 (355)
Q Consensus 125 ~~~~L~~EIerLKreq~~L~qEL~~Lrqr~q~~Eqrqqq 163 (355)
++..+..+++.|+-++..|...+..|+.+++..+.+-..
T Consensus 186 ek~~~~~~~k~le~~k~~Le~~ia~~k~K~e~~e~r~~E 224 (259)
T KOG4001|consen 186 EKTRATTEWKVLEDKKKELELKIAQLKKKLETDEIRSEE 224 (259)
T ss_pred hhhHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHhhhHH
Confidence 456778899999999999999999999888776554433
No 167
>PF13600 DUF4140: N-terminal domain of unknown function (DUF4140)
Probab=25.34 E-value=1.9e+02 Score=23.56 Aligned_cols=30 Identities=27% Similarity=0.514 Sum_probs=17.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 018495 131 MEIARLRQEQKSLDEELQGMNKRLEATERR 160 (355)
Q Consensus 131 ~EIerLKreq~~L~qEL~~Lrqr~q~~Eqr 160 (355)
.+++.|+.+...|..++..++.++...+.+
T Consensus 70 ~~~~~l~~~l~~l~~~~~~~~~~~~~~~~~ 99 (104)
T PF13600_consen 70 PELKELEEELEALEDELAALQDEIQALEAQ 99 (104)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 456666666666666666665555554433
No 168
>KOG4010 consensus Coiled-coil protein TPD52 [General function prediction only]
Probab=25.14 E-value=2.2e+02 Score=27.21 Aligned_cols=31 Identities=32% Similarity=0.413 Sum_probs=21.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 018495 130 VMEIARLRQEQKSLDEELQGMNKRLEATERR 160 (355)
Q Consensus 130 ~~EIerLKreq~~L~qEL~~Lrqr~q~~Eqr 160 (355)
+.|-+.|+.+...++.||..|||-+-.-|++
T Consensus 43 e~Ekeelr~EL~kvEeEI~TLrqVLaAKerH 73 (208)
T KOG4010|consen 43 EEEKEELRTELAKVEEEIVTLRQVLAAKERH 73 (208)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3456678888888888888888755554443
No 169
>PRK10698 phage shock protein PspA; Provisional
Probab=24.83 E-value=3e+02 Score=26.09 Aligned_cols=43 Identities=14% Similarity=0.257 Sum_probs=23.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHH
Q 018495 128 EIVMEIARLRQEQKSLDEELQGMNKRLEATERRPEQMMAFLYK 170 (355)
Q Consensus 128 ~L~~EIerLKreq~~L~qEL~~Lrqr~q~~EqrqqqMm~FLak 170 (355)
.|..+++..+.....|...+..|+.++.....+...|++-...
T Consensus 103 ~l~~~~~~~~~~~~~L~~~l~~L~~ki~eak~k~~~L~aR~~~ 145 (222)
T PRK10698 103 TLEHEVTLVDETLARMKKEIGELENKLSETRARQQALMLRHQA 145 (222)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4444455555555556666666666666665555555554433
No 170
>KOG2629 consensus Peroxisomal membrane anchor protein (peroxin) [Cell wall/membrane/envelope biogenesis; Posttranslational modification, protein turnover, chaperones; Intracellular trafficking, secretion, and vesicular transport]
Probab=24.82 E-value=3.9e+02 Score=27.04 Aligned_cols=45 Identities=13% Similarity=0.214 Sum_probs=34.5
Q ss_pred ChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHH
Q 018495 125 DDEEIVMEIARLRQEQKSLDEELQGMNKRLEATERRPEQMMAFLY 169 (355)
Q Consensus 125 ~~~~L~~EIerLKreq~~L~qEL~~Lrqr~q~~EqrqqqMm~FLa 169 (355)
+...|..+...+..-.+.|+.|+...++++..+++.+-+-+.-|.
T Consensus 123 ~k~~Ld~~~~~~~~~~~~l~~~va~v~q~~~~qq~Els~~L~~l~ 167 (300)
T KOG2629|consen 123 DKRQLDDQFDKAAKSLNALMDEVAQVSQLLATQQSELSRALASLK 167 (300)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 456888888999999999999999999998877765444443333
No 171
>PRK02793 phi X174 lysis protein; Provisional
Probab=24.66 E-value=3.5e+02 Score=21.34 Aligned_cols=30 Identities=17% Similarity=0.230 Sum_probs=15.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 018495 129 IVMEIARLRQEQKSLDEELQGMNKRLEATE 158 (355)
Q Consensus 129 L~~EIerLKreq~~L~qEL~~Lrqr~q~~E 158 (355)
++..|..|.........=|..|.+-+-.++
T Consensus 6 ~e~Ri~~LE~~lafQe~tIe~Ln~~v~~Qq 35 (72)
T PRK02793 6 LEARLAELESRLAFQEITIEELNVTVTAHE 35 (72)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 555566665555554444444444444433
No 172
>PF09006 Surfac_D-trimer: Lung surfactant protein D coiled-coil trimerisation; InterPro: IPR015097 This domain is found in the SFTPD family, which includes lung surfactant protein D (SFTPD), conglutinin, collectin-43 and collectin-46. It forms a triple-helical parallel coiled coil, and mediates trimerisation of the protein []. ; PDB: 4DN8_A 3G84_A 2RIE_C 3IKR_B 1B08_A 2GGX_B 2OS9_C 2ORK_B 1PWB_A 2RIA_C ....
Probab=24.63 E-value=1.9e+02 Score=21.55 Aligned_cols=20 Identities=25% Similarity=0.415 Sum_probs=10.7
Q ss_pred HHHHHHHHHHHHHHHHHHHH
Q 018495 134 ARLRQEQKSLDEELQGMNKR 153 (355)
Q Consensus 134 erLKreq~~L~qEL~~Lrqr 153 (355)
+.||++..+|..+|..|+..
T Consensus 2 ~aLrqQv~aL~~qv~~Lq~~ 21 (46)
T PF09006_consen 2 NALRQQVEALQGQVQRLQAA 21 (46)
T ss_dssp HHHHHHHHHHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHHHHHHH
Confidence 44555555555555544443
No 173
>TIGR01417 PTS_I_fam phosphoenolpyruvate-protein phosphotransferase. This model recognizes a distinct clade of phophoenolpyruvate (PEP)-dependent enzymes. Most members are known or deduced to function as the phosphoenolpyruvate-protein phosphotransferase (or enzyme I) of PTS sugar transport systems. However, some species with both a member of this family and a homolog of the phosphocarrier protein HPr lack a IIC component able to serve as a permease. An HPr homolog designated NPr has been implicated in the regulation of nitrogen assimilation, which demonstrates that not all phosphotransferase system components are associated directly with PTS transport.
Probab=24.62 E-value=2e+02 Score=31.15 Aligned_cols=57 Identities=19% Similarity=0.339 Sum_probs=42.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHhHHHHHHHHHHhhcCCCcHHHHHhh
Q 018495 128 EIVMEIARLRQEQKSLDEELQGMNKRLEAT-ERRPEQMMAFLYKVVEDPDLLPRIIME 184 (355)
Q Consensus 128 ~L~~EIerLKreq~~L~qEL~~Lrqr~q~~-EqrqqqMm~FLakvvqnP~fl~~li~q 184 (355)
.++.|+++|+.-.....+||..|+++.... ......|+..=.-+++||.|+..+...
T Consensus 34 ~~~~E~~rl~~A~~~a~~eL~~l~~~~~~~~g~~~a~If~ah~~mL~D~~l~~~v~~~ 91 (565)
T TIGR01417 34 QVDQEISRFLSARAKAKEDLETIKTKAGKTFGQEKAAIFEAHILILEDPELTEEVIEL 91 (565)
T ss_pred ChHHHHHHHHHHHHHHHHHHHHHHHHHhhhcChHHHHHHHHHHHHhCChHHHHHHHHH
Confidence 567899999999999999999998876442 223345777777778888887655443
No 174
>PF07889 DUF1664: Protein of unknown function (DUF1664); InterPro: IPR012458 The members of this family are hypothetical plant proteins of unknown function. The region featured in this family is approximately 100 amino acids long.
Probab=24.44 E-value=2.3e+02 Score=25.06 Aligned_cols=37 Identities=14% Similarity=0.290 Sum_probs=17.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHH
Q 018495 129 IVMEIARLRQEQKSLDEELQGMNKRLEATERRPEQMM 165 (355)
Q Consensus 129 L~~EIerLKreq~~L~qEL~~Lrqr~q~~EqrqqqMm 165 (355)
|+.--+.|..-+..|.+.|.++-.+++++...+++|-
T Consensus 52 l~~vs~~l~~tKkhLsqRId~vd~klDe~~ei~~~i~ 88 (126)
T PF07889_consen 52 LEQVSESLSSTKKHLSQRIDRVDDKLDEQKEISKQIK 88 (126)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHH
Confidence 3333444444445555555555555554444444333
No 175
>COG1579 Zn-ribbon protein, possibly nucleic acid-binding [General function prediction only]
Probab=24.27 E-value=2.3e+02 Score=27.60 Aligned_cols=38 Identities=24% Similarity=0.374 Sum_probs=27.2
Q ss_pred ChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHH
Q 018495 125 DDEEIVMEIARLRQEQKSLDEELQGMNKRLEATERRPE 162 (355)
Q Consensus 125 ~~~~L~~EIerLKreq~~L~qEL~~Lrqr~q~~Eqrqq 162 (355)
....|..|++.++++...|..||..+..+++..+..+.
T Consensus 90 e~~aL~~E~~~ak~r~~~le~el~~l~~~~~~l~~~i~ 127 (239)
T COG1579 90 ELRALNIEIQIAKERINSLEDELAELMEEIEKLEKEIE 127 (239)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34577788888888888888888887776666554443
No 176
>PF05103 DivIVA: DivIVA protein; InterPro: IPR007793 The Bacillus subtilis divIVA1 mutation causes misplacement of the septum during cell division, resulting in the formation of small, circular, anucleate minicells []. Inactivation of divIVA produces a minicell phenotype, whereas overproduction of DivIVA results in a filamentation phenotype []. These proteins appear to contain coiled-coils.; PDB: 2WUK_C 2WUJ_A.
Probab=24.12 E-value=38 Score=28.41 Aligned_cols=33 Identities=30% Similarity=0.548 Sum_probs=18.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 018495 128 EIVMEIARLRQEQKSLDEELQGMNKRLEATERR 160 (355)
Q Consensus 128 ~L~~EIerLKreq~~L~qEL~~Lrqr~q~~Eqr 160 (355)
.+..+++.|.+++..|..++..|+.++...+..
T Consensus 29 ~l~~~~~~l~~e~~~L~~~~~~l~~~l~~~~~~ 61 (131)
T PF05103_consen 29 ELAEELERLQRENAELKEEIEELQAQLEELREE 61 (131)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHCCCCT-------
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhhH
Confidence 556677777777777777777776665554433
No 177
>PF04420 CHD5: CHD5-like protein; InterPro: IPR007514 Members of this family are probably coiled-coil proteins that are similar to the CHD5 (Congenital heart disease 5) protein. The exact molecular function of these eukaryotic proteins is unknown.; PDB: 3SJA_H 3SJC_D 3SJB_D 3ZS8_D 3VLC_E.
Probab=24.07 E-value=1.8e+02 Score=26.15 Aligned_cols=15 Identities=27% Similarity=0.454 Sum_probs=7.3
Q ss_pred HHHHHHHHHHHHHHH
Q 018495 127 EEIVMEIARLRQEQK 141 (355)
Q Consensus 127 ~~L~~EIerLKreq~ 141 (355)
..+..|+.+|++|++
T Consensus 43 ~~l~~Ei~~l~~E~~ 57 (161)
T PF04420_consen 43 RQLRKEILQLKRELN 57 (161)
T ss_dssp HHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHHHH
Confidence 344445555555444
No 178
>cd00890 Prefoldin Prefoldin is a hexameric molecular chaperone complex, found in both eukaryotes and archaea, that binds and stabilizes newly synthesized polypeptides allowing them to fold correctly. The complex contains two alpha and four beta subunits, the two subunits being evolutionarily related. In archaea, there is usually only one gene for each subunit while in eukaryotes there two or more paralogous genes encoding each subunit adding heterogeneity to the structure of the hexamer. The structure of the complex consists of a double beta barrel assembly with six protruding coiled-coils.
Probab=24.07 E-value=3.6e+02 Score=22.22 Aligned_cols=44 Identities=16% Similarity=0.322 Sum_probs=34.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHh
Q 018495 128 EIVMEIARLRQEQKSLDEELQGMNKRLEATERRPEQMMAFLYKV 171 (355)
Q Consensus 128 ~L~~EIerLKreq~~L~qEL~~Lrqr~q~~EqrqqqMm~FLakv 171 (355)
.+..-++.|++....|..++..+.+.+...+..++++..-|..+
T Consensus 84 ~~~eA~~~l~~r~~~l~~~~~~l~~~~~~~~~~~~~l~~~l~~~ 127 (129)
T cd00890 84 SLEEAIEFLKKRLETLEKQIEKLEKQLEKLQDQITELQEELQQL 127 (129)
T ss_pred cHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 44556788888899999999999998888888887777665544
No 179
>PF12808 Mto2_bdg: Micro-tubular organiser Mto1 C-term Mto2-binding region; InterPro: IPR024545 This domain occurs at the C terminus of microtubule organising proteins in both budding and fission fungi. In Schizosaccharomyces pombe it has been shown to interact with the Mto2p protein, an interaction which is critical for anchoring the cytokinetic actin ring to the medial region of the cell and for proper coordination of mitosis with cytokinesis [, ].
Probab=24.03 E-value=1.4e+02 Score=22.67 Aligned_cols=28 Identities=21% Similarity=0.369 Sum_probs=23.4
Q ss_pred ChHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 018495 125 DDEEIVMEIARLRQEQKSLDEELQGMNK 152 (355)
Q Consensus 125 ~~~~L~~EIerLKreq~~L~qEL~~Lrq 152 (355)
+..+...+|..|..++..|..||..++.
T Consensus 23 d~~~a~~rl~~l~~EN~~Lr~eL~~~r~ 50 (52)
T PF12808_consen 23 DRSAARKRLSKLEGENRLLRAELERLRS 50 (52)
T ss_pred CchhHHHHHHHHHHHHHHHHHHHHHHhh
Confidence 5667788999999999999999987664
No 180
>PF01025 GrpE: GrpE; InterPro: IPR000740 Molecular chaperones are a diverse family of proteins that function to protect proteins in the intracellular milieu from irreversible aggregation during synthesis and in times of cellular stress. The bacterial molecular chaperone DnaK is an enzyme that couples cycles of ATP binding, hydrolysis, and ADP release by an N-terminal ATP-hydrolysing domain to cycles of sequestration and release of unfolded proteins by a C-terminal substrate binding domain. In prokaryotes the grpE protein. Dimeric GrpE is the co-chaperone for DnaK, and acts as a nucleotide exchange factor, stimulating the rate of ADP release 5000-fold []. DnaK is itself a weak ATPase; ATP hydrolysis by DnaK is stimulated by its interaction with another co-chaperone, DnaJ. Thus the co-chaperones DnaJ and GrpE are capable of tightly regulating the nucleotide-bound and substrate-bound state of DnaK in ways that are necessary for the normal housekeeping functions and stress-related functions of the DnaK molecular chaperone cycle. The X-ray crystal structure of GrpE in complex with the ATPase domain of DnaK revealed that GrpE is an asymmetric homodimer, bent in a manner that favours extensive contacts with only one DnaKATPase monomer []. GrpE does not actively compete for the atomic positions occupied by the nucleotide. GrpE and ADP mutually reduce one another's affinity for DnaK 200-fold, and ATP instantly dissociates GrpE from DnaK.; GO: 0000774 adenyl-nucleotide exchange factor activity, 0042803 protein homodimerization activity, 0051087 chaperone binding, 0006457 protein folding; PDB: 3A6M_A 4ANI_A 1DKG_B.
Probab=24.00 E-value=4e+02 Score=23.29 Aligned_cols=34 Identities=32% Similarity=0.425 Sum_probs=28.3
Q ss_pred CChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 018495 124 LDDEEIVMEIARLRQEQKSLDEELQGMNKRLEAT 157 (355)
Q Consensus 124 ~~~~~L~~EIerLKreq~~L~qEL~~Lrqr~q~~ 157 (355)
.....+..+++.|+.+...+.+++..++++.+..
T Consensus 18 ~~l~~l~~~~~~l~~~~~r~~ae~en~~~r~~~e 51 (165)
T PF01025_consen 18 EELEELEKEIEELKERLLRLQAEFENYRKRLEKE 51 (165)
T ss_dssp CCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3566888999999999999999999988877654
No 181
>PF04568 IATP: Mitochondrial ATPase inhibitor, IATP; InterPro: IPR007648 ATP synthase inhibitor prevents the enzyme from switching to ATP hydrolysis during collapse of the electrochemical gradient, for example during oxygen deprivation [] ATP synthase inhibitor forms a one to one complex with the F1 ATPase, possibly by binding at the alpha-beta interface. It is thought to inhibit ATP synthesis by preventing the release of ATP []. The minimum inhibitory region for bovine inhibitor (P01096 from SWISSPROT) is from residues 39 to 72 []. The inhibitor has two oligomeric states, dimer (the active state) and tetramer. At low pH , the inhibitor forms a dimer via antiparallel coiled coil interactions between the C-terminal regions of two monomers. At high pH, the inhibitor forms tetramers and higher oligomers by coiled coil interactions involving the N terminus and inhibitory region, thus preventing the inhibitory activity []. ; GO: 0004857 enzyme inhibitor activity, 0045980 negative regulation of nucleotide metabolic process, 0005739 mitochondrion; PDB: 1GMJ_B 1OHH_H 1HF9_B 2V7Q_J.
Probab=23.95 E-value=2.2e+02 Score=24.27 Aligned_cols=18 Identities=28% Similarity=0.519 Sum_probs=7.3
Q ss_pred HHHHHHHHHHHHHHHHHH
Q 018495 142 SLDEELQGMNKRLEATER 159 (355)
Q Consensus 142 ~L~qEL~~Lrqr~q~~Eq 159 (355)
.|.+|+...+++++.+|.
T Consensus 80 kl~~e~~~~~k~i~~le~ 97 (100)
T PF04568_consen 80 KLKEEIEHHRKEIDELEK 97 (100)
T ss_dssp HHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHH
Confidence 333333334444444443
No 182
>PF12017 Tnp_P_element: Transposase protein; InterPro: IPR021896 Protein in this family are transposases found in insects. This region is about 230 amino acids in length and is found associated with PF05485 from PFAM.
Probab=23.85 E-value=2.2e+02 Score=27.55 Aligned_cols=43 Identities=19% Similarity=0.435 Sum_probs=29.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHhhcC
Q 018495 128 EIVMEIARLRQEQKSLDEELQGMNKRLEATERRPEQMMAFLYKVVED 174 (355)
Q Consensus 128 ~L~~EIerLKreq~~L~qEL~~Lrqr~q~~EqrqqqMm~FLakvvqn 174 (355)
.+..|+..||.....|+.++.+|+++++.. ++|..-|.+.+..
T Consensus 15 ~~~~e~~~Lk~kir~le~~l~~Lk~~l~~~----~~l~~~L~~~Fs~ 57 (236)
T PF12017_consen 15 TLKIENKKLKKKIRRLEKELKKLKQKLEKY----QKLENSLKQIFSE 57 (236)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH----HHHHHHHHHhCcH
Confidence 556688888888888888888888877543 3455555555543
No 183
>PF10779 XhlA: Haemolysin XhlA; InterPro: IPR019715 Haemolysin XhlA is a cell-surface associated haemolysin that lyses the two most prevalent types of insect immune cells (granulocytes and plasmatocytes) as well as rabbit and horse erythrocytes [].
Probab=23.49 E-value=3.5e+02 Score=20.94 Aligned_cols=43 Identities=14% Similarity=0.279 Sum_probs=31.2
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHH
Q 018495 126 DEEIVMEIARLRQEQKSLDEELQGMNKRLEATERRPEQMMAFL 168 (355)
Q Consensus 126 ~~~L~~EIerLKreq~~L~qEL~~Lrqr~q~~EqrqqqMm~FL 168 (355)
...++..+..|++....+..++..+..++...+..++=+...+
T Consensus 15 l~~~~~~i~~lE~~~~~~e~~i~~~~~~l~~I~~n~kW~~r~i 57 (71)
T PF10779_consen 15 LDNHEERIDKLEKRDAANEKDIKNLNKQLEKIKSNTKWIWRTI 57 (71)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3456677888888888888888888888888777665444443
No 184
>PF07195 FliD_C: Flagellar hook-associated protein 2 C-terminus; InterPro: IPR010809 The flagellar hook-associated protein 2 (HAP2 or FliD) forms the distal end of the flagella, and plays a role in mucin specific adhesion of the bacteria []. This alignment covers the C-terminal region of the flagellar hook-associated protein 2.; GO: 0007155 cell adhesion, 0009288 bacterial-type flagellum
Probab=23.45 E-value=2.8e+02 Score=26.15 Aligned_cols=34 Identities=21% Similarity=0.316 Sum_probs=18.6
Q ss_pred ChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 018495 125 DDEEIVMEIARLRQEQKSLDEELQGMNKRLEATE 158 (355)
Q Consensus 125 ~~~~L~~EIerLKreq~~L~qEL~~Lrqr~q~~E 158 (355)
....|..+++.|..+...|...+...++++..+-
T Consensus 194 ~~~~l~~~~~~~~~~i~~~~~rl~~~~~~l~~qf 227 (239)
T PF07195_consen 194 RIDSLNSQIKSLDKQIEDLEERLESKEERLRKQF 227 (239)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3445555666666666665555555555554443
No 185
>PF14282 FlxA: FlxA-like protein
Probab=23.42 E-value=3.1e+02 Score=23.02 Aligned_cols=24 Identities=29% Similarity=0.454 Sum_probs=19.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHH
Q 018495 129 IVMEIARLRQEQKSLDEELQGMNK 152 (355)
Q Consensus 129 L~~EIerLKreq~~L~qEL~~Lrq 152 (355)
....|+.|++....|..+|..|..
T Consensus 17 ~~~~I~~L~~Qi~~Lq~ql~~l~~ 40 (106)
T PF14282_consen 17 SDSQIEQLQKQIKQLQEQLQELSQ 40 (106)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHc
Confidence 377888899999989888888765
No 186
>TIGR03752 conj_TIGR03752 integrating conjugative element protein, PFL_4705 family. Members of this protein family are found occasionally on plasmids such as the Pseudomonas putida toluene catabolic TOL plasmid pWWO_p085. Usually, however, they are found on the bacterial main chromosome in regions flanked by markers of conjugative transfer and/or transposition.
Probab=23.39 E-value=2.1e+02 Score=30.67 Aligned_cols=49 Identities=18% Similarity=0.262 Sum_probs=42.4
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHhhcC
Q 018495 126 DEEIVMEIARLRQEQKSLDEELQGMNKRLEATERRPEQMMAFLYKVVED 174 (355)
Q Consensus 126 ~~~L~~EIerLKreq~~L~qEL~~Lrqr~q~~EqrqqqMm~FLakvvqn 174 (355)
...|..++..|+.+++.|..|=.+|+++.+.+.++.+.|=.-+..+++.
T Consensus 61 lrTlva~~k~~r~~~~~l~~~N~~l~~eN~~L~~r~~~id~~i~~av~~ 109 (472)
T TIGR03752 61 LRTLVAEVKELRKRLAKLISENEALKAENERLQKREQSIDQQIQQAVQS 109 (472)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHh
Confidence 4577889999999999999999999999998888888888888888865
No 187
>PRK04325 hypothetical protein; Provisional
Probab=23.37 E-value=3.8e+02 Score=21.26 Aligned_cols=30 Identities=13% Similarity=0.253 Sum_probs=14.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 018495 129 IVMEIARLRQEQKSLDEELQGMNKRLEATE 158 (355)
Q Consensus 129 L~~EIerLKreq~~L~qEL~~Lrqr~q~~E 158 (355)
++..|..|.....-...=|..|.+-+-.++
T Consensus 7 ~e~Ri~~LE~klAfQE~tIe~LN~vv~~Qq 36 (74)
T PRK04325 7 MEDRITELEIQLAFQEDLIDGLNATVARQQ 36 (74)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 444555555555444444444444443333
No 188
>TIGR02977 phageshock_pspA phage shock protein A. Members of this family are the phage shock protein PspA, from the phage shock operon. This is a narrower family than the set of PspA and its homologs, sometimes several in a genome, as described by PFAM model pfam04012. PspA appears to maintain the protonmotive force under stress conditions that include overexpression of certain phage secretins, heat shock, ethanol, and protein export defects.
Probab=23.22 E-value=3.4e+02 Score=25.37 Aligned_cols=41 Identities=15% Similarity=0.277 Sum_probs=21.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHH
Q 018495 128 EIVMEIARLRQEQKSLDEELQGMNKRLEATERRPEQMMAFL 168 (355)
Q Consensus 128 ~L~~EIerLKreq~~L~qEL~~Lrqr~q~~EqrqqqMm~FL 168 (355)
.|..+++.++.....|...|..|+.++.....+...|++-.
T Consensus 103 ~l~~~~~~~~~~v~~l~~~l~~L~~ki~~~k~k~~~l~ar~ 143 (219)
T TIGR02977 103 ALERELAAVEETLAKLQEDIAKLQAKLAEARARQKALAIRH 143 (219)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 44445555555555555555555555555544444444333
No 189
>PRK00295 hypothetical protein; Provisional
Probab=23.19 E-value=3.7e+02 Score=21.01 Aligned_cols=22 Identities=14% Similarity=0.197 Sum_probs=8.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHhH
Q 018495 140 QKSLDEELQGMNKRLEATERRP 161 (355)
Q Consensus 140 q~~L~qEL~~Lrqr~q~~Eqrq 161 (355)
...|...|.+..+++..+++.+
T Consensus 21 ie~Ln~~v~~Qq~~I~~L~~ql 42 (68)
T PRK00295 21 IQALNDVLVEQQRVIERLQLQM 42 (68)
T ss_pred HHHHHHHHHHHHHHHHHHHHHH
Confidence 3334444444444444433333
No 190
>PRK08032 fliD flagellar capping protein; Reviewed
Probab=23.17 E-value=2.4e+02 Score=29.58 Aligned_cols=29 Identities=10% Similarity=0.287 Sum_probs=16.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 018495 128 EIVMEIARLRQEQKSLDEELQGMNKRLEA 156 (355)
Q Consensus 128 ~L~~EIerLKreq~~L~qEL~~Lrqr~q~ 156 (355)
.|..++.+|.++...|...|..+++|+..
T Consensus 410 ~l~~~i~~l~~~i~~~~~rl~~~e~rl~~ 438 (462)
T PRK08032 410 GVNKTLKKLTKQYNAVSDSIDATIARYKA 438 (462)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 45555666666666655555555555443
No 191
>PF09726 Macoilin: Transmembrane protein; InterPro: IPR019130 This entry represents the multi-pass transmembrane protein Macoilin, which is highly conserved in eukaryotes. ; GO: 0016021 integral to membrane
Probab=23.03 E-value=76 Score=35.29 Aligned_cols=29 Identities=24% Similarity=0.497 Sum_probs=19.2
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 018495 126 DEEIVMEIARLRQEQKSLDEELQGMNKRL 154 (355)
Q Consensus 126 ~~~L~~EIerLKreq~~L~qEL~~Lrqr~ 154 (355)
...|+.|+.+|++|......++..|++++
T Consensus 547 ~~~lE~E~~~lr~elk~kee~~~~~e~~~ 575 (697)
T PF09726_consen 547 RRQLESELKKLRRELKQKEEQIRELESEL 575 (697)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34777788888777776666666655544
No 192
>KOG0977 consensus Nuclear envelope protein lamin, intermediate filament superfamily [Cell cycle control, cell division, chromosome partitioning; Nuclear structure]
Probab=23.00 E-value=2.4e+02 Score=30.77 Aligned_cols=29 Identities=34% Similarity=0.446 Sum_probs=23.4
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 018495 126 DEEIVMEIARLRQEQKSLDEELQGMNKRL 154 (355)
Q Consensus 126 ~~~L~~EIerLKreq~~L~qEL~~Lrqr~ 154 (355)
...|+.++.+||.++..|+.+|.++++++
T Consensus 164 ~~~le~e~~~Lk~en~rl~~~l~~~r~~l 192 (546)
T KOG0977|consen 164 IKALEDELKRLKAENSRLREELARARKQL 192 (546)
T ss_pred HHHHHHHHHHHHHHhhhhHHHHHHHHHHH
Confidence 44778888899999999999888888644
No 193
>PHA02047 phage lambda Rz1-like protein
Probab=22.91 E-value=3.4e+02 Score=23.28 Aligned_cols=33 Identities=12% Similarity=0.225 Sum_probs=21.9
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 018495 126 DEEIVMEIARLRQEQKSLDEELQGMNKRLEATE 158 (355)
Q Consensus 126 ~~~L~~EIerLKreq~~L~qEL~~Lrqr~q~~E 158 (355)
-+.+..+++.++.....+.+.+..++++.+...
T Consensus 36 a~~la~qLE~a~~r~~~~Q~~V~~l~~kae~~t 68 (101)
T PHA02047 36 AKRQTARLEALEVRYATLQRHVQAVEARTNTQR 68 (101)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 346667777777777777777777777744333
No 194
>KOG2264 consensus Exostosin EXT1L [Signal transduction mechanisms]
Probab=22.83 E-value=1.7e+02 Score=32.50 Aligned_cols=37 Identities=22% Similarity=0.276 Sum_probs=16.7
Q ss_pred CCCCCccccCcCccccccc----ccccccccCCcCCCcccCCc
Q 018495 273 NNNNNYSVSSSGWLLGQSR----QVMNSYGCAAIPSPVSAIPA 311 (355)
Q Consensus 273 ~~~~~~~~~~~~~~~~~~~----~~~~~~~~~~~~~~~~~~~~ 311 (355)
+.|+.++.+.+-=++.|+. |.--+|. .+-.|+.+.++
T Consensus 285 ~~n~lyn~~t~raivvQssf~~~q~RpgfD--l~V~pv~h~~~ 325 (907)
T KOG2264|consen 285 TQNLLYNFQTGRAIVVQSSFYTVQIRPGFD--LPVDPVNHIAV 325 (907)
T ss_pred cccceeEeccCceEEEeecceeeeeccCCC--cccCccccccc
Confidence 3444455544333355443 2222343 33556666554
No 195
>PF01920 Prefoldin_2: Prefoldin subunit; InterPro: IPR002777 Prefoldin (PFD) is a chaperone that interacts exclusively with type II chaperonins, hetero-oligomers lacking an obligate co-chaperonin that are found only in eukaryotes (chaperonin-containing T-complex polypeptide-1 (CCT)) and archaea. Eukaryotic PFD is a multi-subunit complex containing six polypeptides in the molecular mass range of 14-23 kDa. In archaea, on the other hand, PFD is composed of two types of subunits, two alpha and four beta. The six subunits associate to form two back-to-back up-and-down eight-stranded barrels, from which hang six coiled coils. Each subunit contributes one (beta subunits) or two (alpha subunits) beta hairpin turns to the barrels. The coiled coils are formed by the N and C termini of an individual subunit. Overall, this unique arrangement resembles a jellyfish. The eukaryotic PFD hexamer is composed of six different subunits; however, these can be grouped into two alpha-like (PFD3 and -5) and four beta-like (PFD1, -2, -4, and -6) subunits based on amino acid sequence similarity with their archaeal counterparts. Eukaryotic PFD has a six-legged structure similar to that seen in the archaeal homologue [, ]. This family contains the archaeal beta subunit, eukaryotic prefoldin subunits 1, 2, 4 and 6. Eukaryotic PFD has been shown to bind both actin and tubulin co-translationally. The chaperone then delivers the target protein to CCT, interacting with the chaperonin through the tips of the coiled coils. No authentic target proteins of any archaeal PFD have been identified, to date.; GO: 0051082 unfolded protein binding, 0006457 protein folding, 0016272 prefoldin complex; PDB: 2ZDI_B 3AEI_B 2ZQM_A 1FXK_A.
Probab=22.64 E-value=3.4e+02 Score=21.55 Aligned_cols=31 Identities=23% Similarity=0.464 Sum_probs=21.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 018495 128 EIVMEIARLRQEQKSLDEELQGMNKRLEATE 158 (355)
Q Consensus 128 ~L~~EIerLKreq~~L~qEL~~Lrqr~q~~E 158 (355)
.+..++..|+.+...+..++..+..++...+
T Consensus 2 e~~~~~~~l~~~l~~~~~q~~~l~~~~~~~~ 32 (106)
T PF01920_consen 2 ELQNKFQELNQQLQQLEQQIQQLERQLRELE 32 (106)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3456777777777777777777766665443
No 196
>TIGR00293 prefoldin, archaeal alpha subunit/eukaryotic subunit 5. This model finds a set of small proteins from the Archaea and from Aquifex aeolicus that may represent two orthologous groups. The proteins are predicted to be mostly coiled coil, and may hit large numbers of proteins that contain coiled coil regions.
Probab=22.55 E-value=2.4e+02 Score=23.70 Aligned_cols=30 Identities=20% Similarity=0.265 Sum_probs=14.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 018495 128 EIVMEIARLRQEQKSLDEELQGMNKRLEAT 157 (355)
Q Consensus 128 ~L~~EIerLKreq~~L~qEL~~Lrqr~q~~ 157 (355)
-++..++.|.+....|..++..+++++...
T Consensus 90 ~l~~~~~~l~~~~~~l~~~l~~l~~~~~~i 119 (126)
T TIGR00293 90 FLKKRIEELEKAIEKLQEALAELASRAQQL 119 (126)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 344444444444455555554444444433
No 197
>PF09766 FimP: Fms-interacting protein; InterPro: IPR019163 This entry represents Thoc5 which is one of the subunits of the THO complex, which additionally contains: HPR1, Thoc2, Thoc6 and Thoc7. The evolutionarily conserved multisubunit THO complex, which is recruited to actively transcribed genes is required for the efficient expression of genes that have internal tandem repeats. It is suggested that the THO complex functions to rectify aberrant structures that arise during transcription [, ] and is required for cell proliferation and for proper export of heat-shock mRNAs under heat stress []. This entry also identifies the crucial 144 N-terminal residues of the FmiP protein, which is essential for the binding of the protein to the cytoplasmic domain of activated Fms-molecules in M-CSF induced haematopoietic differentiation of macrophages. The C terminus contains a putative nuclear localisation sequence and a leucine zipper which suggest further, as yet unknown, nuclear functions. The level of FMIP expression might form a threshold that determines whether cells differentiate into macrophages or into granulocytes [].
Probab=22.37 E-value=2.2e+02 Score=28.90 Aligned_cols=39 Identities=18% Similarity=0.263 Sum_probs=28.2
Q ss_pred ChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHH
Q 018495 125 DDEEIVMEIARLRQEQKSLDEELQGMNKRLEATERRPEQ 163 (355)
Q Consensus 125 ~~~~L~~EIerLKreq~~L~qEL~~Lrqr~q~~Eqrqqq 163 (355)
.+..|..+.+.|++++..|.+|+..-++.+......++.
T Consensus 102 ~Rk~L~~~~~el~~~k~~l~~~~~~k~~~L~~l~~~L~~ 140 (355)
T PF09766_consen 102 QRKRLEEQLKELEQRKKKLQQENKKKKKFLDSLPPQLKS 140 (355)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHH
Confidence 455777888888888888888888777776666554443
No 198
>PRK04406 hypothetical protein; Provisional
Probab=22.33 E-value=4.1e+02 Score=21.24 Aligned_cols=34 Identities=12% Similarity=0.148 Sum_probs=17.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhH
Q 018495 128 EIVMEIARLRQEQKSLDEELQGMNKRLEATERRP 161 (355)
Q Consensus 128 ~L~~EIerLKreq~~L~qEL~~Lrqr~q~~Eqrq 161 (355)
.++..|..|......+..-|..|.+-+-.+++.+
T Consensus 8 ~le~Ri~~LE~~lAfQE~tIe~LN~~v~~Qq~~I 41 (75)
T PRK04406 8 QLEERINDLECQLAFQEQTIEELNDALSQQQLLI 41 (75)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3555666666555555555555555444444333
No 199
>PRK00736 hypothetical protein; Provisional
Probab=22.29 E-value=3.8e+02 Score=20.90 Aligned_cols=36 Identities=14% Similarity=0.308 Sum_probs=14.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHH
Q 018495 129 IVMEIARLRQEQKSLDEELQGMNKRLEATERRPEQM 164 (355)
Q Consensus 129 L~~EIerLKreq~~L~qEL~~Lrqr~q~~EqrqqqM 164 (355)
|+..+.-+..-...|...|.+..+++..++++++.|
T Consensus 10 LE~klafqe~tie~Ln~~v~~Qq~~i~~L~~ql~~L 45 (68)
T PRK00736 10 LEIRVAEQEKTIEELSDQLAEQWKTVEQMRKKLDAL 45 (68)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 333333333333444444444444444444333333
No 200
>PF04822 Takusan: Takusan; InterPro: IPR006907 This family includes several uncharacterised muridae (mouse and rat) proteins.
Probab=22.24 E-value=4.5e+02 Score=21.68 Aligned_cols=30 Identities=23% Similarity=0.328 Sum_probs=23.0
Q ss_pred hHHHH-HHHHHHHHHHHHHHHHHHHHHHHHH
Q 018495 126 DEEIV-MEIARLRQEQKSLDEELQGMNKRLE 155 (355)
Q Consensus 126 ~~~L~-~EIerLKreq~~L~qEL~~Lrqr~q 155 (355)
..... .++++|+.+.+.+..|-..|+.++.
T Consensus 13 ~~e~~~k~lE~L~~eL~~it~ERnELr~~L~ 43 (84)
T PF04822_consen 13 KKEKKMKELERLKFELQKITKERNELRDILA 43 (84)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33444 7888999999998888888887763
No 201
>PF11559 ADIP: Afadin- and alpha -actinin-Binding; InterPro: IPR021622 This family is found in mammals where it is localised at cell-cell adherens junctions [], and in Sch. pombe and other fungi where it anchors spindle-pole bodies to spindle microtubules []. It is a coiled-coil structure, and in pombe, it is required for anchoring the minus end of spindle microtubules to the centrosome equivalent, the spindle-pole body. The name ADIP derives from the family being composed of Afadin- and alpha -Actinin-Binding Proteins Localised at Cell-Cell Adherens Junctions.
Probab=21.98 E-value=3.9e+02 Score=23.26 Aligned_cols=25 Identities=16% Similarity=0.482 Sum_probs=9.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH
Q 018495 128 EIVMEIARLRQEQKSLDEELQGMNK 152 (355)
Q Consensus 128 ~L~~EIerLKreq~~L~qEL~~Lrq 152 (355)
.+..++.+|..+...|...+.+|+.
T Consensus 56 ~l~~~~~~l~~d~~~l~~~~~rL~~ 80 (151)
T PF11559_consen 56 DLSDKLRRLRSDIERLQNDVERLKE 80 (151)
T ss_pred HHHHHHHHHHhHHHHHHHHHHHHHH
Confidence 3333333333333333333333333
No 202
>smart00150 SPEC Spectrin repeats.
Probab=21.96 E-value=3.1e+02 Score=20.52 Aligned_cols=37 Identities=24% Similarity=0.434 Sum_probs=24.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHH
Q 018495 130 VMEIARLRQEQKSLDEELQGMNKRLEATERRPEQMMA 166 (355)
Q Consensus 130 ~~EIerLKreq~~L~qEL~~Lrqr~q~~EqrqqqMm~ 166 (355)
...++.+.+++..+..||...+.++......-++|+.
T Consensus 30 ~~~~~~~~~~~~~~~~e~~~~~~~v~~~~~~~~~L~~ 66 (101)
T smart00150 30 LESVEALLKKHEALEAELEAHEERVEALNELGEQLIE 66 (101)
T ss_pred HHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHH
Confidence 3556666667777888887777776666555554444
No 203
>PRK14127 cell division protein GpsB; Provisional
Probab=21.95 E-value=3.4e+02 Score=23.45 Aligned_cols=41 Identities=5% Similarity=0.185 Sum_probs=22.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHH
Q 018495 128 EIVMEIARLRQEQKSLDEELQGMNKRLEATERRPEQMMAFL 168 (355)
Q Consensus 128 ~L~~EIerLKreq~~L~qEL~~Lrqr~q~~EqrqqqMm~FL 168 (355)
+.+.=++.+-.+...|..|+.+|+.++..++.++..+-.-+
T Consensus 27 EVD~FLd~V~~dye~l~~e~~~Lk~e~~~l~~~l~e~~~~~ 67 (109)
T PRK14127 27 EVDKFLDDVIKDYEAFQKEIEELQQENARLKAQVDELTKQV 67 (109)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Confidence 33334444555666666666666666665555554444433
No 204
>PF08227 DASH_Hsk3: DASH complex subunit Hsk3 like; InterPro: IPR013183 This is a family of fungal proteins of unknown function.
Probab=21.88 E-value=3.3e+02 Score=20.04 Aligned_cols=38 Identities=21% Similarity=0.232 Sum_probs=19.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHh
Q 018495 133 IARLRQEQKSLDEELQGMNKRLEATERRPEQMMAFLYKV 171 (355)
Q Consensus 133 IerLKreq~~L~qEL~~Lrqr~q~~EqrqqqMm~FLakv 171 (355)
+..|-.+...|...|.+..+.++-+-... .+|.+|-++
T Consensus 4 ~s~L~~qL~qL~aNL~~t~~~l~~~s~Q~-~~i~~LG~~ 41 (45)
T PF08227_consen 4 YSHLASQLAQLQANLADTENLLEMTSIQA-NSIRKLGKI 41 (45)
T ss_pred HHHHHHHHHHHHHhHHHHHHHHHHHHHHH-HHHHHHHHH
Confidence 34444555555555555555554443333 566666554
No 205
>COG4467 Regulator of replication initiation timing [Replication, recombination, and repair]
Probab=21.83 E-value=2.4e+02 Score=24.62 Aligned_cols=32 Identities=28% Similarity=0.451 Sum_probs=23.1
Q ss_pred ChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 018495 125 DDEEIVMEIARLRQEQKSLDEELQGMNKRLEA 156 (355)
Q Consensus 125 ~~~~L~~EIerLKreq~~L~qEL~~Lrqr~q~ 156 (355)
+..+|-..+..|.++...|.+||..|++++..
T Consensus 2 dKkeiFd~v~~le~~l~~l~~el~~lK~~l~~ 33 (114)
T COG4467 2 DKKEIFDQVDNLEEQLGVLLAELGGLKQHLGS 33 (114)
T ss_pred CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34566677777778888888888887777654
No 206
>PF12958 DUF3847: Protein of unknown function (DUF3847); InterPro: IPR024215 This entry represents a family of uncharacterised proteins that were found by clustering human gut metagenomic sequences [].
Probab=21.81 E-value=3.5e+02 Score=22.47 Aligned_cols=31 Identities=16% Similarity=0.354 Sum_probs=17.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 018495 127 EEIVMEIARLRQEQKSLDEELQGMNKRLEAT 157 (355)
Q Consensus 127 ~~L~~EIerLKreq~~L~qEL~~Lrqr~q~~ 157 (355)
+.|..|++..+.+......++..|+.+....
T Consensus 4 e~l~~e~e~~~~kl~q~e~~~k~L~nr~k~l 34 (86)
T PF12958_consen 4 EELQAEIEKAEKKLEQAEHKIKQLENRKKKL 34 (86)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4555566666666666666666655555444
No 207
>PF07028 DUF1319: Protein of unknown function (DUF1319); InterPro: IPR010746 This entry is represented by Commelina yellow mottle virus, Orf1. The characteristics of the protein distribution suggest prophage matches in addition to the phage matches. This family contains a number of viral proteins of unknown function approximately 200 residues long. Family members seem to be restricted to badnaviruses.
Probab=21.61 E-value=2.8e+02 Score=24.66 Aligned_cols=49 Identities=24% Similarity=0.426 Sum_probs=30.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHh-HHHHHHHHHHhhcCCCcHH
Q 018495 131 MEIARLRQEQKSLDEELQGMNKRLEATERR-PEQMMAFLYKVVEDPDLLP 179 (355)
Q Consensus 131 ~EIerLKreq~~L~qEL~~Lrqr~q~~Eqr-qqqMm~FLakvvqnP~fl~ 179 (355)
.+++.|+.++..|..||..|++..-...-. -+.+-..+.++...|.|+.
T Consensus 60 ~~l~~l~~~l~~l~~eL~~Lr~~~l~rRPLtk~dVeeLV~~IseQPK~IE 109 (126)
T PF07028_consen 60 SELKELKQELDVLSKELQALRKEYLERRPLTKEDVEELVLRISEQPKFIE 109 (126)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHhCcHHHH
Confidence 347777777777777777777765432111 1344456667777888874
No 208
>PRK00846 hypothetical protein; Provisional
Probab=21.45 E-value=3e+02 Score=22.43 Aligned_cols=35 Identities=3% Similarity=-0.094 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHH
Q 018495 130 VMEIARLRQEQKSLDEELQGMNKRLEATERRPEQM 164 (355)
Q Consensus 130 ~~EIerLKreq~~L~qEL~~Lrqr~q~~EqrqqqM 164 (355)
+.-|+.|.+.....++++.+|+.+++.+-.+++.|
T Consensus 26 e~tIe~LN~~v~~qq~~I~~L~~ql~~L~~rL~~~ 60 (77)
T PRK00846 26 EQALTELSEALADARLTGARNAELIRHLLEDLGKV 60 (77)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
No 209
>KOG2196 consensus Nuclear porin [Nuclear structure]
Probab=21.43 E-value=2.3e+02 Score=28.01 Aligned_cols=32 Identities=25% Similarity=0.389 Sum_probs=24.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 018495 128 EIVMEIARLRQEQKSLDEELQGMNKRLEATER 159 (355)
Q Consensus 128 ~L~~EIerLKreq~~L~qEL~~Lrqr~q~~Eq 159 (355)
.|..|+..++.+++.|.+||.-+-.+++++|+
T Consensus 117 ~Ly~e~~~vk~~qkrLdq~L~~I~sqQ~ELE~ 148 (254)
T KOG2196|consen 117 GLYNEVVKVKLDQKRLDQELEFILSQQQELED 148 (254)
T ss_pred HHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHH
Confidence 66788888888888888888777766665543
No 210
>PHA01750 hypothetical protein
Probab=21.42 E-value=1.6e+02 Score=23.68 Aligned_cols=19 Identities=16% Similarity=0.415 Sum_probs=8.8
Q ss_pred HHHHHHHHHHHHHHHHHhH
Q 018495 143 LDEELQGMNKRLEATERRP 161 (355)
Q Consensus 143 L~qEL~~Lrqr~q~~Eqrq 161 (355)
..+||..|+.+++++..+|
T Consensus 40 V~~ELdNL~~ei~~~kikq 58 (75)
T PHA01750 40 VNSELDNLKTEIEELKIKQ 58 (75)
T ss_pred HHHHHHHHHHHHHHHHHhH
Confidence 3444444555554444443
No 211
>PF08781 DP: Transcription factor DP; InterPro: IPR014889 DP forms a heterodimer with E2F and regulates genes involved in cell cycle progression. The transcriptional activity of E2F is inhibited by the retinoblastoma protein which binds to the E2F-DP heterodimer [] and negatively regulates the G1-S transition. ; PDB: 2AZE_A.
Probab=21.39 E-value=3.7e+02 Score=24.34 Aligned_cols=25 Identities=20% Similarity=0.373 Sum_probs=15.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH
Q 018495 132 EIARLRQEQKSLDEELQGMNKRLEA 156 (355)
Q Consensus 132 EIerLKreq~~L~qEL~~Lrqr~q~ 156 (355)
++++|+.++..+...|..=++.++.
T Consensus 2 ~~~~Le~ek~~~~~rI~~K~~~LqE 26 (142)
T PF08781_consen 2 ECEELEEEKQRRRERIKKKKEQLQE 26 (142)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 5667777777666665554444443
No 212
>PF05384 DegS: Sensor protein DegS; InterPro: IPR008595 This is a group of Bacillus DegS proteins. The DegS-DegU two-component regulatory system of Bacillus subtilis controls various processes that characterise the transition from the exponential to the stationary growth phase, including the induction of extracellular degradative enzymes, expression of late competence genes and down-regulation of the sigma D regulon []. The entry also contains one sequence Q8R9D3 from SWISSPROT from Thermoanaerobacter tengcongensis which is described as a sensory transduction histidine kinase.; GO: 0016301 kinase activity, 0007165 signal transduction
Probab=21.32 E-value=4.1e+02 Score=24.31 Aligned_cols=45 Identities=27% Similarity=0.344 Sum_probs=29.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHhh
Q 018495 128 EIVMEIARLRQEQKSLDEELQGMNKRLEATERRPEQMMAFLYKVV 172 (355)
Q Consensus 128 ~L~~EIerLKreq~~L~qEL~~Lrqr~q~~EqrqqqMm~FLakvv 172 (355)
....|.++|+++...+..++...-.+++.++..-.+.-.-|+-|-
T Consensus 24 ~~R~E~~~l~~EL~evk~~v~~~I~evD~Le~~er~aR~rL~eVS 68 (159)
T PF05384_consen 24 QARQEYERLRKELEEVKEEVSEVIEEVDKLEKRERQARQRLAEVS 68 (159)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 334567777777777777777766666666666666555554443
No 213
>PF13600 DUF4140: N-terminal domain of unknown function (DUF4140)
Probab=21.29 E-value=2e+02 Score=23.40 Aligned_cols=33 Identities=21% Similarity=0.379 Sum_probs=27.0
Q ss_pred ChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 018495 125 DDEEIVMEIARLRQEQKSLDEELQGMNKRLEAT 157 (355)
Q Consensus 125 ~~~~L~~EIerLKreq~~L~qEL~~Lrqr~q~~ 157 (355)
....|..+++.|+.+...+..++..+++++.-+
T Consensus 71 ~~~~l~~~l~~l~~~~~~~~~~~~~~~~~~~~L 103 (104)
T PF13600_consen 71 ELKELEEELEALEDELAALQDEIQALEAQIAFL 103 (104)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Confidence 456888899999999999999998888877543
No 214
>PF02050 FliJ: Flagellar FliJ protein; InterPro: IPR012823 Many flagellar proteins are exported by a flagellum-specific export pathway. Attempts have been made to characterise the apparatus responsible for this process, by designing assays to screen for mutants with export defects []. Experiments involving filament removal from temperature-sensitive flagellar mutants of Salmonella typhimurium have shown that, while most mutants were able to regrow filaments, flhA, fliH, fliI and fliN mutants showed no or greatly reduced regrowth. This suggests that the corresponding gene products are involved in the process of flagellum-specific export. The sequences of fliH, fliI and the adjacent gene, fliJ, have been deduced. FliJ was shown to encode a protein of molecular mass 17,302 Da []. It is a membrane-associated protein that affects chemotactic events, mutations in FliJ result in failure to respond to chemotactic stimuli.; GO: 0003774 motor activity, 0001539 ciliary or flagellar motility, 0006935 chemotaxis, 0009288 bacterial-type flagellum, 0016020 membrane, 0044461 bacterial-type flagellum part; PDB: 3AJW_A.
Probab=21.26 E-value=3.8e+02 Score=20.99 Aligned_cols=37 Identities=19% Similarity=0.388 Sum_probs=22.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHH
Q 018495 128 EIVMEIARLRQEQKSLDEELQGMNKRLEATERRPEQM 164 (355)
Q Consensus 128 ~L~~EIerLKreq~~L~qEL~~Lrqr~q~~EqrqqqM 164 (355)
.|...|..++.+...+..++...++.+.......+.|
T Consensus 56 ~l~~~i~~~~~~~~~~~~~~~~~r~~l~~a~~~~k~~ 92 (123)
T PF02050_consen 56 ALEQAIQQQQQELERLEQEVEQAREELQEARRERKKL 92 (123)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 5556666666666666666666666665554444433
No 215
>PF08614 ATG16: Autophagy protein 16 (ATG16); InterPro: IPR013923 Macroautophagy is a bulk degradation process induced by starvation in eukaryotic cells. In yeast, 15 Apg proteins coordinate the formation of autophagosomes. No molecule involved in autophagy has yet been identified in higher eukaryotes []. The pre-autophagosomal structure contains at least five Apg proteins: Apg1p, Apg2p, Apg5p, Aut7p/Apg8p and Apg16p. It is found in the vacuole []. The C-terminal glycine of Apg12p is conjugated to a lysine residue of Apg5p via an isopeptide bond. During autophagy, cytoplasmic components are enclosed in autophagosomes and delivered to lysosomes/vacuoles. Auotphagy protein 16 (Apg16) has been shown to be bind to Apg5 and is required for the function of the Apg12p-Apg5p conjugate []. Autophagy protein 5 (Apg5) is directly required for the import of aminopeptidase I via the cytoplasm-to-vacuole targeting pathway []. This entry represents auotphagy protein 16 (Apg16), which is required for the function of the Apg12p-Apg5p conjugate.; PDB: 3A7O_D 3A7P_B.
Probab=21.18 E-value=6.2e+02 Score=23.10 Aligned_cols=55 Identities=18% Similarity=0.279 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHhhcCCCcHHHHHhhhhh
Q 018495 127 EEIVMEIARLRQEQKSLDEELQGMNKRLEATERRPEQMMAFLYKVVEDPDLLPRIIMEKES 187 (355)
Q Consensus 127 ~~L~~EIerLKreq~~L~qEL~~Lrqr~q~~EqrqqqMm~FLakvvqnP~fl~~li~q~e~ 187 (355)
..+..+|+.+.+.++.|..|+..|+-++..+|.+..++-.=-..++ .|+|..+.+
T Consensus 133 ~~l~~~l~ek~k~~e~l~DE~~~L~l~~~~~e~k~~~l~~En~~Lv------~Rwm~~k~~ 187 (194)
T PF08614_consen 133 KDLEEELKEKNKANEILQDELQALQLQLNMLEEKLRKLEEENRELV------ERWMQRKAQ 187 (194)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH------HHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH------HHHHHHHHH
No 216
>PF04380 BMFP: Membrane fusogenic activity; InterPro: IPR007475 BMFP consists of two structural domains, a coiled-coil C-terminal domain via which the protein self-associates as a trimer, and an N-terminal domain disordered at neutral pH but adopting an amphipathic alpha-helical structure in the presence of phospholipid vesicles, high ionic strength, acidic pH or SDS. BMFP interacts with phospholipid vesicles though the predicted amphipathic alpha-helix induced in the N-terminal half of the protein and promotes aggregation and fusion of vesicles in vitro.
Probab=21.13 E-value=1.9e+02 Score=23.11 Aligned_cols=28 Identities=29% Similarity=0.348 Sum_probs=20.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHhHHHH
Q 018495 137 RQEQKSLDEELQGMNKRLEATERRPEQM 164 (355)
Q Consensus 137 Kreq~~L~qEL~~Lrqr~q~~EqrqqqM 164 (355)
+.|..++...|.+++++++.+|.++..+
T Consensus 49 REEFd~q~~~L~~~r~kl~~LEarl~~L 76 (79)
T PF04380_consen 49 REEFDAQKAVLARTREKLEALEARLAAL 76 (79)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 5677777777888888888877776554
No 217
>PF07106 TBPIP: Tat binding protein 1(TBP-1)-interacting protein (TBPIP); InterPro: IPR010776 This family consists of several eukaryotic TBP-1 interacting protein (TBPIP) sequences. TBP-1 has been demonstrated to interact with the human immunodeficiency virus type 1 (HIV-1) viral protein Tat, then modulate the essential replication process of HIV. In addition, TBP-1 has been shown to be a component of the 26S proteasome, a basic multiprotein complex that degrades ubiquitinated proteins in an ATP-dependent fashion. Human TBPIP interacts with human TBP-1 then modulates the inhibitory action of human TBP-1 on HIV-Tat-mediated transactivation [].
Probab=21.08 E-value=3.5e+02 Score=24.03 Aligned_cols=36 Identities=25% Similarity=0.363 Sum_probs=26.7
Q ss_pred CChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 018495 124 LDDEEIVMEIARLRQEQKSLDEELQGMNKRLEATER 159 (355)
Q Consensus 124 ~~~~~L~~EIerLKreq~~L~qEL~~Lrqr~q~~Eq 159 (355)
.+...|..+|..|+.+...|..++..|+.++..+..
T Consensus 72 eel~~ld~ei~~L~~el~~l~~~~k~l~~eL~~L~~ 107 (169)
T PF07106_consen 72 EELAELDAEIKELREELAELKKEVKSLEAELASLSS 107 (169)
T ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 345677778888888888888888888877766543
No 218
>PF14131 DUF4298: Domain of unknown function (DUF4298)
Probab=20.98 E-value=3.6e+02 Score=22.04 Aligned_cols=38 Identities=16% Similarity=0.238 Sum_probs=25.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHH
Q 018495 131 MEIARLRQEQKSLDEELQGMNKRLEATERRPEQMMAFL 168 (355)
Q Consensus 131 ~EIerLKreq~~L~qEL~~Lrqr~q~~EqrqqqMm~FL 168 (355)
.+++.+=.+...+..+|...-++.++.+...++|..|=
T Consensus 3 ~eme~~y~~~~~~l~~le~~l~~~~~~~~~~~~L~~YY 40 (90)
T PF14131_consen 3 QEMEKIYNEWCELLEELEEALEKWQEAQPDYRKLRDYY 40 (90)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 35555556666677777777777777776777766665
No 219
>smart00502 BBC B-Box C-terminal domain. Coiled coil region C-terminal to (some) B-Box domains
Probab=20.70 E-value=4.1e+02 Score=21.21 Aligned_cols=17 Identities=6% Similarity=0.255 Sum_probs=11.3
Q ss_pred HHhHHHHHHHHHHhhcC
Q 018495 158 ERRPEQMMAFLYKVVED 174 (355)
Q Consensus 158 EqrqqqMm~FLakvvqn 174 (355)
-.....++.|+..++..
T Consensus 88 l~~l~~~~~~~e~~l~~ 104 (127)
T smart00502 88 QEKLSHAINFTEEALNS 104 (127)
T ss_pred HHHHHHHHHHHHHHHHc
Confidence 34456677888888754
No 220
>PRK06798 fliD flagellar capping protein; Validated
Probab=20.63 E-value=3.3e+02 Score=28.47 Aligned_cols=30 Identities=10% Similarity=0.199 Sum_probs=17.3
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 018495 126 DEEIVMEIARLRQEQKSLDEELQGMNKRLE 155 (355)
Q Consensus 126 ~~~L~~EIerLKreq~~L~qEL~~Lrqr~q 155 (355)
...|+.+|++|.+++..+...+.+.++++.
T Consensus 381 ~~~l~~~i~~l~~~~~~~e~rl~~~e~~l~ 410 (440)
T PRK06798 381 SKSIDNRVSKLDLKITDIDTQNKQKQDNIV 410 (440)
T ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 445666666666666666665554444443
No 221
>PRK03947 prefoldin subunit alpha; Reviewed
Probab=20.52 E-value=4.2e+02 Score=22.73 Aligned_cols=45 Identities=18% Similarity=0.285 Sum_probs=36.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHhh
Q 018495 128 EIVMEIARLRQEQKSLDEELQGMNKRLEATERRPEQMMAFLYKVV 172 (355)
Q Consensus 128 ~L~~EIerLKreq~~L~qEL~~Lrqr~q~~EqrqqqMm~FLakvv 172 (355)
.+..-++.|++....|...+..+.+.+....+.++++..-|..+.
T Consensus 91 ~~~eA~~~l~~~~~~l~~~~~~l~~~l~~~~~~~~~~~~~l~~l~ 135 (140)
T PRK03947 91 DLDEAIEILDKRKEELEKALEKLEEALQKLASRIAQLAQELQQLQ 135 (140)
T ss_pred cHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 667788889999999999999999988888888877777666544
No 222
>PRK11177 phosphoenolpyruvate-protein phosphotransferase; Provisional
Probab=20.51 E-value=2.5e+02 Score=30.53 Aligned_cols=56 Identities=18% Similarity=0.281 Sum_probs=40.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHhHHHHHHHHHHhhcCCCcHHHHHh
Q 018495 128 EIVMEIARLRQEQKSLDEELQGMNKRLEAT-ERRPEQMMAFLYKVVEDPDLLPRIIM 183 (355)
Q Consensus 128 ~L~~EIerLKreq~~L~qEL~~Lrqr~q~~-EqrqqqMm~FLakvvqnP~fl~~li~ 183 (355)
.++.|+++|+.-.+....||..++++.... ......|+..=..+++||.|+..+..
T Consensus 35 ~ie~E~~Rl~~A~~~a~~eL~~l~~~~~~~~g~e~a~If~ah~~lL~D~~l~~~v~~ 91 (575)
T PRK11177 35 QVDQEVERFLSGRAKASAQLEAIKTKAGETFGEEKEAIFEGHIMLLEDEELEQEIIA 91 (575)
T ss_pred ChHHHHHHHHHHHHHHHHHHHHHHHHHhhhcChHHHHHHHHHHHHhCCHHHHHHHHH
Confidence 467899999999999999999988776432 22334567776777788887765444
No 223
>PF08172 CASP_C: CASP C terminal; InterPro: IPR012955 This domain is the C-terminal region of the CASP family of proteins. These are Golgi membrane proteins which are thought to have a role in vesicle transport [].; GO: 0006891 intra-Golgi vesicle-mediated transport, 0030173 integral to Golgi membrane
Probab=20.34 E-value=3.5e+02 Score=26.30 Aligned_cols=37 Identities=16% Similarity=0.197 Sum_probs=24.8
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHH
Q 018495 126 DEEIVMEIARLRQEQKSLDEELQGMNKRLEATERRPE 162 (355)
Q Consensus 126 ~~~L~~EIerLKreq~~L~qEL~~Lrqr~q~~Eqrqq 162 (355)
..+|++|+.+++++...|..||..|+.....+=.++.
T Consensus 95 n~ELE~elr~~~~~~~~L~~Ev~~L~~DN~kLYEKiR 131 (248)
T PF08172_consen 95 NAELEEELRKQQQTISSLRREVESLRADNVKLYEKIR 131 (248)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3477777777777777777777777766655544543
No 224
>PF06295 DUF1043: Protein of unknown function (DUF1043); InterPro: IPR009386 This entry consists of several hypothetical bacterial proteins of unknown function.
Probab=20.32 E-value=3e+02 Score=23.90 Aligned_cols=22 Identities=23% Similarity=0.416 Sum_probs=9.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHH
Q 018495 135 RLRQEQKSLDEELQGMNKRLEA 156 (355)
Q Consensus 135 rLKreq~~L~qEL~~Lrqr~q~ 156 (355)
.|+++....++||...|+.+..
T Consensus 29 ~l~~eL~~~k~el~~yk~~V~~ 50 (128)
T PF06295_consen 29 KLEQELEQAKQELEQYKQEVND 50 (128)
T ss_pred HHHHHHHHHHHHHHHHHHHHHH
Confidence 3444444444444444444433
No 225
>TIGR02132 phaR_Bmeg polyhydroxyalkanoic acid synthase, PhaR subunit. This model describes a protein, PhaR, localized to polyhydroxyalkanoic acid (PHA) inclusion granules in Bacillus cereus and related species. PhaR is required for PHA biosynthesis along with PhaC and may be a regulatory subunit.
Probab=20.30 E-value=4.2e+02 Score=25.07 Aligned_cols=33 Identities=6% Similarity=0.350 Sum_probs=26.9
Q ss_pred HHHHHHHHHHHHHHHHHHhHHHHHHHHHHhhcC
Q 018495 142 SLDEELQGMNKRLEATERRPEQMMAFLYKVVED 174 (355)
Q Consensus 142 ~L~qEL~~Lrqr~q~~EqrqqqMm~FLakvvqn 174 (355)
++..+|..|++++..++.+..+|+..|..--+.
T Consensus 111 ~~~~~v~~~~q~~~~l~~K~D~~L~llE~~~~~ 143 (189)
T TIGR02132 111 ALKKDVTKLKQDIKSLDKKLDKILELLEGQQKT 143 (189)
T ss_pred hHHhHHHHHHHHHHHHHHHHHHHHHHHhcCccc
Confidence 567778889999999999999999998854433
No 226
>COG5481 Uncharacterized conserved small protein containing a coiled-coil domain [Function unknown]
Probab=20.23 E-value=1.9e+02 Score=22.91 Aligned_cols=28 Identities=39% Similarity=0.618 Sum_probs=17.9
Q ss_pred ChHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 018495 125 DDEEIVMEIARLRQEQKSLDEELQGMNK 152 (355)
Q Consensus 125 ~~~~L~~EIerLKreq~~L~qEL~~Lrq 152 (355)
++.++.-.+.+|+++...+-.-+..|.+
T Consensus 5 dqaeirl~~arLrqeH~D~DaaInAmi~ 32 (67)
T COG5481 5 DQAEIRLTLARLRQEHADFDAAINAMIA 32 (67)
T ss_pred cHHHHHHHHHHHHHHHhhHHHHHHHHHH
Confidence 4556777777777777666655555543
No 227
>KOG3091 consensus Nuclear pore complex, p54 component (sc Nup57) [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport]
Probab=20.23 E-value=2.6e+02 Score=30.16 Aligned_cols=42 Identities=12% Similarity=0.100 Sum_probs=26.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHH
Q 018495 128 EIVMEIARLRQEQKSLDEELQGMNKRLEATERRPEQMMAFLY 169 (355)
Q Consensus 128 ~L~~EIerLKreq~~L~qEL~~Lrqr~q~~EqrqqqMm~FLa 169 (355)
.+.++|.+|++.+..--..|.++|+|+..+++|+=++|.-+.
T Consensus 359 ~i~e~v~eLqk~~ad~~~KI~~~k~r~~~Ls~RiLRv~ikqe 400 (508)
T KOG3091|consen 359 AIGERVTELQKHHADAVAKIEEAKNRHVELSHRILRVMIKQE 400 (508)
T ss_pred HHHHHHHHHHhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 445566666666666666666777777777776655554443
No 228
>PRK02119 hypothetical protein; Provisional
Probab=20.21 E-value=4.5e+02 Score=20.85 Aligned_cols=31 Identities=19% Similarity=0.227 Sum_probs=16.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 018495 128 EIVMEIARLRQEQKSLDEELQGMNKRLEATE 158 (355)
Q Consensus 128 ~L~~EIerLKreq~~L~qEL~~Lrqr~q~~E 158 (355)
.++..|..|.........-|..|.+-+-.++
T Consensus 6 ~~e~Ri~~LE~rla~QE~tie~LN~~v~~Qq 36 (73)
T PRK02119 6 NLENRIAELEMKIAFQENLLEELNQALIEQQ 36 (73)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4555666666555555555555554444433
No 229
>PF10481 CENP-F_N: Cenp-F N-terminal domain; InterPro: IPR018463 Mitosin or centromere-associated protein-F (Cenp-F) is found bound across the centromere as one of the proteins of the outer layer of the kinetochore []. Most of the kinetochore/centromere functions appear to depend upon binding of the C-terminal part of the molecule, whereas the N-terminal part, here, may be a cytoplasmic player in controlling the function of microtubules and dynein [].
Probab=20.21 E-value=2.7e+02 Score=28.05 Aligned_cols=14 Identities=21% Similarity=0.600 Sum_probs=7.7
Q ss_pred HHHHHHHHHHHHHH
Q 018495 128 EIVMEIARLRQEQK 141 (355)
Q Consensus 128 ~L~~EIerLKreq~ 141 (355)
+|+.++++||+|+.
T Consensus 22 elE~QldkLkKE~q 35 (307)
T PF10481_consen 22 ELEQQLDKLKKERQ 35 (307)
T ss_pred HHHHHHHHHHHHHH
Confidence 55555555555554
No 230
>PF10234 Cluap1: Clusterin-associated protein-1; InterPro: IPR019366 This protein of 413 amino acids contains a central coiled-coil domain, possibly the region that binds to clusterin. Cluap1 expression is highest in the nucleus and gradually increases during late S to G2/M phases of the cell cycle and returns to the basal level in the G0/G1 phases. In addition, it is upregulated in colon cancer tissues compared to corresponding non-cancerous mucosa. It thus plays a crucial role in the life of the cell [].
Probab=20.19 E-value=2.8e+02 Score=27.54 Aligned_cols=36 Identities=14% Similarity=0.375 Sum_probs=18.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHH
Q 018495 128 EIVMEIARLRQEQKSLDEELQGMNKRLEATERRPEQ 163 (355)
Q Consensus 128 ~L~~EIerLKreq~~L~qEL~~Lrqr~q~~Eqrqqq 163 (355)
.+...++.|+.|...|...|.+-+..++..++|++.
T Consensus 180 ~~~~~l~~l~~de~~Le~KIekkk~ELER~qKRL~s 215 (267)
T PF10234_consen 180 QTQQQLNNLASDEANLEAKIEKKKQELERNQKRLQS 215 (267)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 334445555555555555555545555555544443
No 231
>PF04012 PspA_IM30: PspA/IM30 family; InterPro: IPR007157 This family includes PspA a protein that suppresses sigma54-dependent transcription. The PspA protein, a negative regulator of the Escherichia coli phage shock psp operon, is produced when virulence factors are exported through secretins in many Gram-negative pathogenic bacteria and its homologue in plants, VIPP1, plays a critical role in thylakoid biogenesis, essential for photosynthesis. Activation of transcription by the enhancer-dependent bacterial sigma54-containing RNA polymerase occurs through ATP hydrolysis-driven protein conformational changes enabled by activator proteins that belong to the large AAA(+) mechanochemical protein family. It has been shown that PspA directly and specifically acts upon and binds to the AAA(+) domain of the PspF transcription activator [].
Probab=20.14 E-value=3e+02 Score=25.29 Aligned_cols=19 Identities=16% Similarity=0.302 Sum_probs=7.1
Q ss_pred HHHHHHHHHHHHHHHHHHH
Q 018495 131 MEIARLRQEQKSLDEELQG 149 (355)
Q Consensus 131 ~EIerLKreq~~L~qEL~~ 149 (355)
.+++.|+.+...+...+..
T Consensus 98 ~~~~~l~~~~~~~~~~~~~ 116 (221)
T PF04012_consen 98 EQAERLEQQLDQAEAQVEK 116 (221)
T ss_pred HHHHHHHHHHHHHHHHHHH
Confidence 3333333333333333333
Done!