Query 018495
Match_columns 355
No_of_seqs 236 out of 1026
Neff 4.6
Searched_HMMs 29240
Date Mon Mar 25 16:08:59 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/018495.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/018495hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 1hks_A Heat-shock transcriptio 100.0 2.1E-40 7.2E-45 275.7 7.5 96 7-102 1-106 (106)
2 2ldu_A Heat shock factor prote 100.0 2.3E-39 8E-44 277.2 8.2 101 6-106 13-124 (125)
3 3hts_B Heat shock transcriptio 100.0 2.7E-33 9.3E-38 232.6 4.5 83 5-87 7-100 (102)
4 4avp_A ETS translocation varia 95.0 0.016 5.4E-07 48.3 3.5 84 1-84 2-90 (106)
5 2ypr_A Protein FEV; transcript 92.3 0.097 3.3E-06 43.3 3.6 78 8-85 5-87 (102)
6 1fli_A FLI-1; transcription/DN 92.3 0.085 2.9E-06 43.4 3.1 64 9-72 4-68 (98)
7 1awc_A Protein (GA binding pro 91.8 0.074 2.5E-06 44.6 2.3 70 15-84 5-79 (110)
8 1bc8_C SAP-1, protein (SAP-1 E 91.4 0.059 2E-06 43.9 1.2 74 12-85 6-84 (93)
9 1gvj_A C-ETS-1 protein, P54; t 89.3 0.19 6.5E-06 44.0 2.7 78 8-85 37-119 (146)
10 1wwx_A E74-like factor 5 ESE-2 87.9 0.36 1.2E-05 40.2 3.4 78 6-84 4-88 (107)
11 3jtg_A ETS-related transcripti 87.2 0.3 1E-05 40.3 2.5 72 13-84 7-85 (103)
12 2dao_A Transcription factor ET 86.9 0.92 3.1E-05 38.4 5.3 77 8-84 6-88 (118)
13 1hbx_G ETS-domain protein ELK- 86.8 0.19 6.4E-06 44.5 1.1 74 12-85 7-85 (157)
14 2nny_A C-ETS-1 protein, P54; p 86.7 0.66 2.3E-05 41.5 4.6 76 9-84 63-143 (171)
15 3e98_A GAF domain of unknown f 86.1 1.8 6.1E-05 40.3 7.4 81 81-178 39-119 (252)
16 1yo5_C SAM pointed domain cont 82.8 0.51 1.8E-05 38.6 1.9 67 8-74 8-77 (97)
17 2yy0_A C-MYC-binding protein; 82.0 1.9 6.4E-05 31.5 4.5 30 125-154 20-49 (53)
18 2lf8_A Transcription factor ET 81.1 0.35 1.2E-05 41.4 0.0 58 15-72 9-68 (128)
19 1deb_A APC protein, adenomatou 79.6 11 0.00039 27.5 7.8 41 125-165 4-44 (54)
20 1pue_E Protein (transcription 79.4 0.82 2.8E-05 36.8 1.9 69 15-84 6-83 (89)
21 3ra3_B P2F; coiled coil domain 76.8 2.3 7.8E-05 26.9 3.0 26 133-158 2-27 (28)
22 2jee_A YIIU; FTSZ, septum, coi 76.7 6.1 0.00021 31.3 6.2 22 128-149 24-45 (81)
23 1hjb_A Ccaat/enhancer binding 73.9 5.6 0.00019 31.8 5.4 33 127-159 39-71 (87)
24 1t2k_D Cyclic-AMP-dependent tr 73.3 8.1 0.00028 28.2 5.8 33 126-158 24-56 (61)
25 2wt7_A Proto-oncogene protein 73.0 9.4 0.00032 28.2 6.2 33 126-158 25-57 (63)
26 4dzn_A Coiled-coil peptide CC- 72.3 6.2 0.00021 25.8 4.3 25 128-152 6-30 (33)
27 2yy0_A C-MYC-binding protein; 70.8 6 0.0002 28.8 4.5 33 130-162 18-50 (53)
28 1kd8_A GABH AIV, GCN4 acid bas 68.8 12 0.00043 25.3 5.3 30 128-157 5-34 (36)
29 1ci6_A Transcription factor AT 68.3 11 0.00037 28.0 5.6 32 126-157 25-56 (63)
30 1kd8_B GABH BLL, GCN4 acid bas 66.9 13 0.00046 25.2 5.2 29 128-156 5-33 (36)
31 4dzn_A Coiled-coil peptide CC- 66.7 12 0.00042 24.4 4.8 28 131-158 2-29 (33)
32 2dgc_A Protein (GCN4); basic d 66.4 6 0.00021 29.5 3.9 30 126-155 32-61 (63)
33 3mq7_A Bone marrow stromal ant 66.1 11 0.00039 31.8 5.8 25 129-153 76-100 (121)
34 3m48_A General control protein 65.5 10 0.00035 25.4 4.3 27 128-154 4-30 (33)
35 3vmx_A Voltage-gated hydrogen 64.0 30 0.001 24.9 6.9 40 130-169 3-42 (48)
36 1a93_B MAX protein, coiled coi 63.9 7.2 0.00025 26.2 3.4 24 127-150 10-33 (34)
37 2w83_C C-JUN-amino-terminal ki 63.7 12 0.0004 29.4 5.1 40 126-165 32-71 (77)
38 1g6u_A Domain swapped dimer; d 61.7 33 0.0011 24.0 6.5 33 128-160 4-42 (48)
39 1gu4_A CAAT/enhancer binding p 60.8 11 0.00037 29.5 4.5 32 127-158 39-70 (78)
40 2l5g_B Putative uncharacterize 60.7 20 0.00069 25.1 5.4 36 125-160 3-38 (42)
41 2xdj_A Uncharacterized protein 59.6 26 0.00088 27.6 6.6 42 128-169 24-65 (83)
42 1jnm_A Proto-oncogene C-JUN; B 58.3 11 0.00036 27.7 3.9 32 126-157 24-55 (62)
43 2akf_A Coronin-1A; coiled coil 58.2 11 0.00039 24.6 3.5 27 135-161 3-29 (32)
44 3cve_A Homer protein homolog 1 56.5 36 0.0012 26.3 6.7 37 128-164 4-40 (72)
45 3a2a_A Voltage-gated hydrogen 55.8 32 0.0011 25.5 6.0 34 131-164 11-44 (58)
46 3c3g_A Alpha/beta peptide with 55.3 23 0.00079 23.6 4.7 27 128-154 4-30 (33)
47 1uo4_A General control protein 55.3 19 0.00066 24.1 4.3 27 128-154 5-31 (34)
48 1nkp_B MAX protein, MYC proto- 54.6 13 0.00045 28.5 4.1 31 132-162 48-78 (83)
49 1dh3_A Transcription factor CR 54.5 9.7 0.00033 27.6 3.1 27 127-153 25-51 (55)
50 3c3f_A Alpha/beta peptide with 53.5 26 0.00088 23.5 4.7 27 128-154 5-31 (34)
51 2w6b_A RHO guanine nucleotide 52.1 51 0.0017 24.4 6.5 31 128-158 7-37 (56)
52 1nlw_A MAD protein, MAX dimeri 51.8 18 0.00061 28.0 4.4 32 132-163 48-79 (80)
53 2bni_A General control protein 51.3 25 0.00084 23.6 4.3 27 128-154 5-31 (34)
54 2wt7_B Transcription factor MA 51.2 15 0.00052 29.5 4.0 34 127-160 51-84 (90)
55 1nkp_A C-MYC, MYC proto-oncoge 50.5 27 0.00092 27.4 5.3 34 131-164 52-85 (88)
56 2oxj_A Hybrid alpha/beta pepti 50.0 31 0.0011 23.1 4.7 27 128-154 5-31 (34)
57 2wq1_A General control protein 49.9 32 0.0011 22.9 4.7 26 128-153 4-29 (33)
58 1fxk_C Protein (prefoldin); ar 49.4 38 0.0013 27.7 6.4 40 127-166 91-130 (133)
59 2wt7_B Transcription factor MA 49.1 30 0.001 27.8 5.4 31 126-156 57-87 (90)
60 3ra3_A P1C; coiled coil domain 48.4 11 0.00036 23.9 2.1 22 134-155 3-24 (28)
61 3ra3_B P2F; coiled coil domain 48.3 19 0.00064 22.7 3.2 24 129-152 5-28 (28)
62 2xu6_A MDV1 coiled coil; prote 47.7 58 0.002 25.2 6.6 60 127-186 3-62 (72)
63 2hy6_A General control protein 47.7 36 0.0012 22.8 4.7 27 128-154 5-31 (34)
64 1bb1_B Designed, thermostable 47.5 38 0.0013 22.4 4.8 26 132-157 3-28 (36)
65 2w6b_A RHO guanine nucleotide 47.3 68 0.0023 23.7 6.6 39 126-164 12-50 (56)
66 3cue_D Transport protein parti 47.2 13 0.00046 33.3 3.4 61 12-73 88-157 (193)
67 3mud_A DNA repair protein XRCC 47.0 37 0.0013 30.4 6.2 40 130-169 134-173 (175)
68 1lwu_C Fibrinogen gamma chain; 46.0 50 0.0017 31.9 7.5 43 126-168 7-49 (323)
69 2w6a_A ARF GTPase-activating p 45.5 53 0.0018 24.7 5.9 31 130-160 26-56 (63)
70 3cvf_A Homer-3, homer protein 44.6 38 0.0013 26.5 5.3 38 126-163 8-45 (79)
71 3kqg_A Langerin, C-type lectin 44.6 25 0.00084 29.4 4.6 30 129-158 4-36 (182)
72 3iv1_A Tumor susceptibility ge 44.5 37 0.0013 26.7 5.1 25 130-154 45-69 (78)
73 3m91_A Proteasome-associated A 43.8 71 0.0024 23.0 6.2 37 128-164 13-49 (51)
74 3bj4_A Potassium voltage-gated 42.7 37 0.0013 24.5 4.5 34 139-172 11-44 (49)
75 2k48_A Nucleoprotein; viral pr 42.7 50 0.0017 27.4 5.9 33 127-159 31-63 (107)
76 2xv5_A Lamin-A/C; structural p 42.4 69 0.0024 24.6 6.4 38 129-166 3-40 (74)
77 1gd2_E Transcription factor PA 42.1 34 0.0012 26.1 4.6 33 128-160 33-65 (70)
78 3swy_A Cyclic nucleotide-gated 41.7 91 0.0031 22.1 7.3 41 128-168 2-42 (46)
79 4etp_A Kinesin-like protein KA 41.5 59 0.002 31.9 7.4 42 125-166 4-45 (403)
80 3v86_A De novo design helix; c 40.3 33 0.0011 21.5 3.4 23 128-150 4-26 (27)
81 3uux_B Mitochondrial division 40.2 55 0.0019 30.7 6.5 60 125-184 157-216 (242)
82 2zqm_A Prefoldin beta subunit 40.1 1.1E+02 0.0038 24.0 7.6 42 132-173 71-112 (117)
83 1wt6_A Myotonin-protein kinase 40.0 80 0.0027 24.9 6.4 34 127-160 27-60 (81)
84 2wuj_A Septum site-determining 38.4 25 0.00087 25.5 3.2 31 128-158 24-54 (57)
85 3swf_A CGMP-gated cation chann 38.2 1.3E+02 0.0043 23.4 7.2 43 128-170 4-46 (74)
86 1nkp_B MAX protein, MYC proto- 37.9 30 0.001 26.4 3.7 29 128-156 51-79 (83)
87 3ljm_A Coil Ser L9C; de novo d 37.7 45 0.0015 21.4 3.8 27 133-159 3-29 (31)
88 4e61_A Protein BIM1; EB1-like 37.6 1.2E+02 0.004 25.1 7.4 34 127-160 7-40 (106)
89 2v66_B Nuclear distribution pr 37.5 1.1E+02 0.0039 25.3 7.4 43 126-168 37-79 (111)
90 3he4_A Synzip6; heterodimeric 36.9 76 0.0026 22.8 5.3 36 125-160 18-53 (56)
91 4emc_A Monopolin complex subun 36.3 66 0.0023 29.1 6.2 46 127-172 23-68 (190)
92 2r2v_A GCN4 leucine zipper; co 36.1 69 0.0024 21.5 4.7 27 128-154 5-31 (34)
93 3m9b_A Proteasome-associated A 36.0 39 0.0013 31.8 4.8 34 128-161 58-91 (251)
94 3a2a_A Voltage-gated hydrogen 35.4 75 0.0026 23.5 5.2 31 126-156 20-50 (58)
95 3t97_B Nuclear pore complex pr 35.4 1.2E+02 0.0041 23.0 6.5 36 128-163 14-49 (65)
96 2zqm_A Prefoldin beta subunit 35.0 1E+02 0.0035 24.2 6.6 38 128-165 74-111 (117)
97 3t97_C Nuclear pore glycoprote 34.9 69 0.0024 24.0 5.2 31 128-158 16-46 (64)
98 3hnw_A Uncharacterized protein 34.8 1.3E+02 0.0044 25.5 7.5 32 130-161 74-105 (138)
99 1go4_E MAD1 (mitotic arrest de 33.9 73 0.0025 26.0 5.5 31 132-162 13-43 (100)
100 1uii_A Geminin; human, DNA rep 33.7 70 0.0024 25.4 5.2 28 130-157 45-72 (83)
101 3duz_A GP67, major envelope gl 33.4 74 0.0025 32.2 6.5 105 124-249 277-383 (487)
102 2aze_B Transcription factor E2 33.2 67 0.0023 26.1 5.3 23 132-154 7-29 (106)
103 1ic2_A Tropomyosin alpha chain 33.0 1.1E+02 0.0037 23.3 6.2 42 129-170 25-66 (81)
104 2wvr_A Geminin; DNA replicatio 32.8 1E+02 0.0035 28.3 6.8 45 128-172 112-159 (209)
105 3u1c_A Tropomyosin alpha-1 cha 32.8 1.6E+02 0.0056 23.3 7.5 44 128-171 27-70 (101)
106 1hjb_A Ccaat/enhancer binding 32.4 53 0.0018 26.0 4.4 36 133-168 38-73 (87)
107 3he5_B Synzip2; heterodimeric 32.2 1.3E+02 0.0046 21.2 6.0 27 126-152 5-31 (52)
108 1ci6_A Transcription factor AT 32.2 1.5E+02 0.005 21.7 6.6 37 130-166 22-58 (63)
109 1g6u_A Domain swapped dimer; d 31.9 81 0.0028 22.0 4.7 24 132-155 21-44 (48)
110 3ghg_A Fibrinogen alpha chain; 31.6 75 0.0026 33.0 6.4 14 159-172 180-193 (562)
111 2wt7_A Proto-oncogene protein 31.3 1.5E+02 0.0052 21.5 6.9 38 131-168 23-60 (63)
112 2zdi_C Prefoldin subunit alpha 31.2 97 0.0033 25.9 6.2 38 128-165 102-139 (151)
113 1joc_A EEA1, early endosomal a 31.1 99 0.0034 25.5 6.1 37 126-162 6-42 (125)
114 1zym_A Enzyme I; phosphotransf 31.0 99 0.0034 28.5 6.7 59 127-185 34-93 (258)
115 3oja_B Anopheles plasmodium-re 30.9 1.1E+02 0.0036 30.4 7.4 25 127-151 505-529 (597)
116 2zxx_A Geminin; coiled-coil, c 30.8 62 0.0021 25.4 4.4 24 130-153 33-56 (79)
117 2xdj_A Uncharacterized protein 30.4 1E+02 0.0034 24.2 5.7 39 134-172 23-61 (83)
118 1use_A VAsp, vasodilator-stimu 29.7 71 0.0024 22.7 4.1 24 131-154 7-31 (45)
119 3u06_A Protein claret segregat 29.6 1.3E+02 0.0045 29.7 7.7 39 125-163 4-42 (412)
120 3hnw_A Uncharacterized protein 29.5 1.8E+02 0.006 24.6 7.5 31 127-157 78-108 (138)
121 3a7p_A Autophagy protein 16; c 29.3 87 0.003 27.4 5.6 59 129-187 66-139 (152)
122 3w03_C DNA repair protein XRCC 29.1 67 0.0023 28.8 5.0 22 21-42 31-55 (184)
123 2z5i_A TM, general control pro 28.9 65 0.0022 23.1 4.0 37 130-166 11-47 (52)
124 1sz7_A BET3 homolog, trafficki 28.1 43 0.0015 30.3 3.6 62 12-74 85-154 (200)
125 1m1j_C Fibrinogen gamma chain; 27.9 1.3E+02 0.0043 30.0 7.2 45 128-172 88-132 (409)
126 2ic6_A Nucleocapsid protein; h 26.8 92 0.0031 24.4 4.8 30 130-159 4-33 (78)
127 3i00_A HIP-I, huntingtin-inter 26.7 1.5E+02 0.0053 24.6 6.5 22 131-152 15-36 (120)
128 1fxk_A Prefoldin; archaeal pro 26.6 1.8E+02 0.0061 22.4 6.6 28 136-163 70-97 (107)
129 3viq_B Mating-type switching p 26.6 72 0.0025 25.4 4.2 30 125-154 2-31 (85)
130 1jnm_A Proto-oncogene C-JUN; B 26.5 39 0.0013 24.6 2.5 24 128-151 33-56 (62)
131 2wuj_A Septum site-determining 26.2 86 0.0029 22.6 4.3 29 126-154 29-57 (57)
132 1nlw_A MAD protein, MAX dimeri 26.2 81 0.0028 24.2 4.4 28 128-155 51-78 (80)
133 3tnu_A Keratin, type I cytoske 26.1 2.1E+02 0.0071 23.6 7.2 28 128-155 49-76 (131)
134 1x8y_A Lamin A/C; structural p 26.1 1.8E+02 0.006 22.5 6.4 37 130-166 27-63 (86)
135 3tnu_B Keratin, type II cytosk 26.0 2.1E+02 0.0072 23.4 7.2 21 131-151 36-56 (129)
136 1ic2_A Tropomyosin alpha chain 25.8 2.2E+02 0.0074 21.6 7.5 27 130-156 40-66 (81)
137 1uii_A Geminin; human, DNA rep 25.6 2.3E+02 0.0078 22.4 6.9 32 125-156 47-78 (83)
138 1gk4_A Vimentin; intermediate 25.6 1.8E+02 0.0063 22.2 6.4 20 133-152 3-22 (84)
139 3u59_A Tropomyosin beta chain; 25.6 2.5E+02 0.0084 22.1 7.5 44 128-171 27-70 (101)
140 1gu4_A CAAT/enhancer binding p 25.5 72 0.0025 24.8 4.0 22 136-157 41-62 (78)
141 1t2k_D Cyclic-AMP-dependent tr 25.4 1.9E+02 0.0064 20.7 6.6 29 133-161 24-52 (61)
142 1fmh_B General control protein 25.4 1.2E+02 0.004 19.8 4.2 25 133-157 3-27 (33)
143 3na7_A HP0958; flagellar bioge 25.4 1.7E+02 0.0059 26.5 7.2 34 125-158 91-124 (256)
144 1gmj_A ATPase inhibitor; coile 25.3 1.9E+02 0.0066 22.9 6.4 39 126-164 35-77 (84)
145 4etp_A Kinesin-like protein KA 25.2 1.8E+02 0.0061 28.5 7.7 39 126-164 12-50 (403)
146 3r4h_A Coiled coil helix CC-TE 25.1 79 0.0027 20.7 3.4 24 128-151 6-29 (34)
147 1jcd_A Major outer membrane li 24.9 1.7E+02 0.0059 21.1 5.6 24 129-152 9-32 (52)
148 1am9_A Srebp-1A, protein (ster 24.8 96 0.0033 23.7 4.6 28 131-158 50-77 (82)
149 1fxk_A Prefoldin; archaeal pro 24.7 1E+02 0.0034 23.9 4.8 38 127-164 68-105 (107)
150 3swf_A CGMP-gated cation chann 24.6 2.2E+02 0.0076 22.0 6.5 28 127-154 10-37 (74)
151 3vmx_A Voltage-gated hydrogen 24.6 1.6E+02 0.0054 21.1 5.2 30 126-155 13-42 (48)
152 3efg_A Protein SLYX homolog; x 24.6 1.6E+02 0.0054 22.7 5.8 43 126-168 9-51 (78)
153 3oja_B Anopheles plasmodium-re 24.6 1.5E+02 0.0052 29.3 7.2 34 130-163 522-555 (597)
154 1fzc_C Fibrin; blood coagulati 24.4 36 0.0012 32.9 2.5 25 130-154 17-41 (319)
155 1a93_B MAX protein, coiled coi 24.1 1.1E+02 0.0038 20.5 4.1 26 136-161 5-30 (34)
156 1go4_E MAD1 (mitotic arrest de 23.6 1.2E+02 0.0042 24.6 5.2 31 126-156 14-44 (100)
157 3efg_A Protein SLYX homolog; x 23.4 2.5E+02 0.0086 21.5 7.1 44 127-170 17-60 (78)
158 2ovc_A Potassium voltage-gated 23.1 1.2E+02 0.0042 20.0 4.1 27 140-166 5-31 (33)
159 1gk4_A Vimentin; intermediate 23.0 2.2E+02 0.0075 21.8 6.4 36 131-166 26-61 (84)
160 4gkw_A Spindle assembly abnorm 22.8 2.3E+02 0.0079 24.5 6.9 38 132-169 47-84 (167)
161 3r4h_A Coiled coil helix CC-TE 22.7 1.5E+02 0.0051 19.4 4.4 25 132-156 3-27 (34)
162 3oja_A Leucine-rich immune mol 22.7 1.5E+02 0.0053 28.7 6.7 17 138-154 435-451 (487)
163 3cvf_A Homer-3, homer protein 22.6 2.8E+02 0.0094 21.6 7.1 42 127-168 16-57 (79)
164 1ykh_B RNA polymerase II holoe 22.6 1.8E+02 0.0061 24.3 6.2 43 124-166 85-127 (132)
165 1fxk_C Protein (prefoldin); ar 22.5 2.4E+02 0.0082 22.7 6.9 45 128-172 85-129 (133)
166 2w83_C C-JUN-amino-terminal ki 22.3 95 0.0033 24.3 4.0 16 128-143 13-28 (77)
167 3m9b_A Proteasome-associated A 22.3 65 0.0022 30.3 3.7 54 130-183 53-106 (251)
168 3ghg_A Fibrinogen alpha chain; 22.3 1.3E+02 0.0045 31.2 6.2 37 128-164 114-150 (562)
169 2oqq_A Transcription factor HY 22.2 2E+02 0.007 20.0 6.0 27 128-154 7-33 (42)
170 3mtu_A Tropomyosin alpha-1 cha 22.1 2.3E+02 0.0078 21.5 6.2 26 134-159 5-30 (75)
171 1wlq_A Geminin; coiled-coil; 2 22.1 1.4E+02 0.0048 23.6 5.0 31 128-158 35-65 (83)
172 1yke_B RNA polymerase II holoe 21.9 1.8E+02 0.0061 25.0 6.2 42 124-165 85-126 (151)
173 3cve_A Homer protein homolog 1 21.6 2.8E+02 0.0095 21.3 7.1 40 128-167 11-50 (72)
174 3w03_C DNA repair protein XRCC 21.6 1.2E+02 0.004 27.2 5.1 24 131-154 152-175 (184)
175 2v71_A Nuclear distribution pr 21.5 2.6E+02 0.0088 25.1 7.4 34 127-160 91-124 (189)
176 2wg5_A General control protein 21.2 75 0.0026 25.7 3.5 25 132-156 8-32 (109)
177 1whv_A Poly(A)-specific ribonu 20.9 26 0.00088 28.8 0.6 53 17-70 32-89 (100)
178 1l8d_A DNA double-strand break 20.7 3E+02 0.01 21.4 7.1 42 128-169 61-102 (112)
179 3tnu_B Keratin, type II cytosk 20.6 2.1E+02 0.0071 23.4 6.2 29 128-156 47-75 (129)
180 3mq7_A Bone marrow stromal ant 20.5 2.4E+02 0.0084 23.7 6.4 12 143-154 76-87 (121)
181 2zvf_A Alanyl-tRNA synthetase; 20.4 1.4E+02 0.0047 25.0 5.2 30 127-156 28-57 (171)
182 3q8t_A Beclin-1; autophagy, AT 20.2 2.3E+02 0.0078 22.4 6.1 26 128-153 22-47 (96)
183 1wlq_A Geminin; coiled-coil; 2 20.1 3.3E+02 0.011 21.5 6.9 30 125-154 39-68 (83)
No 1
>1hks_A Heat-shock transcription factor; transcription regulation; NMR {Drosophila melanogaster} SCOP: a.4.5.22 PDB: 1hkt_A
Probab=100.00 E-value=2.1e-40 Score=275.71 Aligned_cols=96 Identities=39% Similarity=0.782 Sum_probs=92.3
Q ss_pred CCCCChHHHHHHHhhcCCCCCCcEEEcCCCCeEEEeCCchhhhhhcccccCCCChhHHHhhhcccCccccC---------
Q 018495 7 NNVIAPFVMKTYQMVNDPTTDSLISWGKANNSFIVVDPLDFSQRILPAYFKHNNFSSFVRQLNTYGFRKVD--------- 77 (355)
Q Consensus 7 ~~~~p~Fl~KLy~mLed~~~~~iIsWs~~G~sFvV~d~~~F~~~VLP~yFKh~nfsSFvRQLN~YGFrKv~--------- 77 (355)
+.++|+||.|||+||+|+++++||+|+++|++|||+|+++|+++|||+||||+||+|||||||+|||+||.
T Consensus 1 g~~~p~F~~KL~~mv~d~~~~~iI~W~~~G~sFvI~d~~~F~~~vLp~yFkh~n~~SFvRQLN~YGF~Kv~~~~~~~~~~ 80 (106)
T 1hks_A 1 GSGVPAFLAKLWRLVDDADTNRLICWTKDGQSFVIQNQAQFAKELLPLNYKHNNMASFIRQLNMYGFHKITSIDNGGLRF 80 (106)
T ss_dssp CTTCCTTHHHHHHHHSSSTTTTTSEESTTTSCEECSCCSTTTTTTSTTTTSCCCHHHHHHHHHHHCCCCSSCSSSCCSSC
T ss_pred CCCcCcHHHHHHHHhcCCCCCCEEEEeCCCCEEEECCHHHHHHHHhHHhcCCCcHHHHHHhhhcCCCeEEecccccCccC
Confidence 36789999999999999999999999999999999999999999999999999999999999999999984
Q ss_pred -CCCceEecccccccccccccceeec
Q 018495 78 -PDKWEFANEWFLRGQKHLLKNIVRR 102 (355)
Q Consensus 78 -pd~~eF~He~F~RG~~~LL~~IkRk 102 (355)
++.|||+||+|+||+++||.+|+||
T Consensus 81 ~~~~~ef~h~~F~Rg~~~LL~~IkRk 106 (106)
T 1hks_A 81 DRDEIEFSHPFFKRNSPFLLDQIKRK 106 (106)
T ss_dssp TTSTTEECCTTCCSSCTTSTTTCCCC
T ss_pred CCCceEEECcCccCcCHHHHhhCcCC
Confidence 5789999999999999999999997
No 2
>2ldu_A Heat shock factor protein 1; structural genomics, northeast structural genomics consortiu DNA-binding, PSI-biology, protein structure initiative; NMR {Homo sapiens}
Probab=100.00 E-value=2.3e-39 Score=277.19 Aligned_cols=101 Identities=50% Similarity=0.848 Sum_probs=95.8
Q ss_pred CCCCCChHHHHHHHhhcCCCCCCcEEEcCCCCeEEEeCCchhhhhhcccccCCCChhHHHhhhcccCccccC--------
Q 018495 6 TNNVIAPFVMKTYQMVNDPTTDSLISWGKANNSFIVVDPLDFSQRILPAYFKHNNFSSFVRQLNTYGFRKVD-------- 77 (355)
Q Consensus 6 ~~~~~p~Fl~KLy~mLed~~~~~iIsWs~~G~sFvV~d~~~F~~~VLP~yFKh~nfsSFvRQLN~YGFrKv~-------- 77 (355)
....+++||.|||+||+|+++++||+|+++|++|||+|+++|+++|||+||||+||+|||||||+|||+||.
T Consensus 13 ~~~~~~~F~~KL~~ml~d~~~~~iI~W~~~G~sFvV~d~~~F~~~vLp~yFkh~nfsSFvRQLN~YGF~Kv~~~~~~~~~ 92 (125)
T 2ldu_A 13 GPSNVPAFLTKLWTLVSDPDTDALICWSPSGNSFHVFDQGQFAKEVLPKYFKHNNMASFVRQLNMYGFRKVVHIEQGGLV 92 (125)
T ss_dssp SSCCCCHHHHHHHHHHHCTTTTTTEEECTTSSEEEECCHHHHHHHHHHHHSSCCCHHHHHHHHHHTTCEEEECSCCSSSS
T ss_pred cCCCCCcHHHHHHHHhhCCCCCCEEEEcCCCCEEEEeCHHHHHHHHhHHhcCCCcHHHHHHHhcccCceEEeeccccccc
Confidence 357899999999999999999999999999999999999999999999999999999999999999999983
Q ss_pred ---CCCceEecccccccccccccceeeccCCC
Q 018495 78 ---PDKWEFANEWFLRGQKHLLKNIVRRKHSS 106 (355)
Q Consensus 78 ---pd~~eF~He~F~RG~~~LL~~IkRkk~~s 106 (355)
++.|||+||+|+||+++||.+|+||+++.
T Consensus 93 ~~~~~~~eF~H~~F~Rg~~~LL~~IkRk~~~~ 124 (125)
T 2ldu_A 93 KPERDDTEFQHPCFLRGQEQLLENIKRKVTSV 124 (125)
T ss_dssp SCSSCCEEEECTTCBTTBGGGTTTSCCCTTSC
T ss_pred cCCCCccEEECccccCCCHHHHhhCcCCCCCC
Confidence 47899999999999999999999998753
No 3
>3hts_B Heat shock transcription factor; transcription regulation, DNA-binding protein, complex (WING helix_TURN_ helix-DNA); 1.75A {Kluyveromyces lactis} SCOP: a.4.5.22 PDB: 2hts_A 1fyk_A* 1fym_A 1fyl_A 3hsf_A 1fbu_A 1fbs_A 1fbq_A
Probab=99.97 E-value=2.7e-33 Score=232.59 Aligned_cols=83 Identities=45% Similarity=0.819 Sum_probs=77.8
Q ss_pred CCCCCCChHHHHHHHhhcCCCCCCcEEEcCCCCeEEEeCCchhhhhhcccccCCCChhHHHhhhcccCccccC-------
Q 018495 5 NTNNVIAPFVMKTYQMVNDPTTDSLISWGKANNSFIVVDPLDFSQRILPAYFKHNNFSSFVRQLNTYGFRKVD------- 77 (355)
Q Consensus 5 ~~~~~~p~Fl~KLy~mLed~~~~~iIsWs~~G~sFvV~d~~~F~~~VLP~yFKh~nfsSFvRQLN~YGFrKv~------- 77 (355)
.....+|+||.|||+||+|+++++||+|+++|++|||+|+++|+++|||+||||+||+||+||||+|||+||.
T Consensus 7 ~~~~~~p~F~~KL~~ml~d~~~~~iI~W~~~G~sfiI~d~~~F~~~VLp~yFkh~nfsSFvRQLN~YGF~Kv~~~~~g~~ 86 (102)
T 3hts_B 7 VGSMARPAFVNKLWSMVNDKSNEKFIHWSTSGESIVVPNRERFVQEVLPKYFKHSNFASFVRQLNMYGWHKVQDVKSGSM 86 (102)
T ss_dssp ---CCSCHHHHHHHHHHHCGGGTTTSEECTTSCSEEESCHHHHHHHTHHHHCSSCCHHHHHHHHHHTTEEECC-------
T ss_pred CCCCCCCcHHHHHHHHhcCCCCCCEEEEeCCCCEEEEcCHHHHHHHHHHHhcCCCcHHHHHHHhhcCCceEeeccccCcc
Confidence 3457899999999999999999999999999999999999999999999999999999999999999999997
Q ss_pred ----CCCceEeccc
Q 018495 78 ----PDKWEFANEW 87 (355)
Q Consensus 78 ----pd~~eF~He~ 87 (355)
+++|||+||+
T Consensus 87 ~~~~~~~wEF~n~~ 100 (102)
T 3hts_B 87 LSNNDSRWEFENER 100 (102)
T ss_dssp --CCSCCEEEEECC
T ss_pred cCCCcCCeEecCCC
Confidence 7899999986
No 4
>4avp_A ETS translocation variant 1; transcription, transcriptional activation and repression, DN binding protein, E twenty-SIX, erwing sarcoma; 1.82A {Homo sapiens} PDB: 4b06_A
Probab=95.00 E-value=0.016 Score=48.30 Aligned_cols=84 Identities=18% Similarity=0.355 Sum_probs=58.8
Q ss_pred CCCCCCCCCCChHHHHHHHhhcCCCCCCcEEEcCCCCeEEEeCCchhhhhhcc-cccCCCChhHHHhhhcccC----ccc
Q 018495 1 MEPNNTNNVIAPFVMKTYQMVNDPTTDSLISWGKANNSFIVVDPLDFSQRILP-AYFKHNNFSSFVRQLNTYG----FRK 75 (355)
Q Consensus 1 m~~~~~~~~~p~Fl~KLy~mLed~~~~~iIsWs~~G~sFvV~d~~~F~~~VLP-~yFKh~nfsSFvRQLN~YG----FrK 75 (355)
|-|..++.+.-....=|.++|+|++..++|+|...+..|.+.|+++.++.-=. +-=..-+|..+-|-|..|- .+|
T Consensus 2 ~~~~~~~~g~i~LwqFL~~LL~d~~~~~~I~W~~~~~~Fkl~dp~~VA~lWG~rKnkp~M~YeKlSRaLRyYY~kgii~K 81 (106)
T 4avp_A 2 MGPTSQRRGSLQLWQFLVALLDDPSNSHFIAWTGRGMEFKLIEPEEVARRWGIQKNRPAMNYDKLSRSLRYYYEKGIMQK 81 (106)
T ss_dssp ---------CCCHHHHHHHHHHCGGGTTTEEECSSTTEEEESSHHHHHHHHHHHTTCTTCCHHHHHHHHHHHHHHTSEEE
T ss_pred CCCCCCCCCcEeHHHHHHHHHcCccCCCCCcccCCCceEEecCHHHHHHHHHhccCCCCcCHHHHHHHHHHHHhcCeEEe
Confidence 56777777777788889999999999999999998889999999988874332 1224678999999997763 246
Q ss_pred cCCCCceEe
Q 018495 76 VDPDKWEFA 84 (355)
Q Consensus 76 v~pd~~eF~ 84 (355)
|...+..|.
T Consensus 82 v~G~r~vYk 90 (106)
T 4avp_A 82 VAGERYVYK 90 (106)
T ss_dssp CTTCSSEEE
T ss_pred cCCCeEEEE
Confidence 666666666
No 5
>2ypr_A Protein FEV; transcription; 2.64A {Homo sapiens} PDB: 1fli_A
Probab=92.33 E-value=0.097 Score=43.25 Aligned_cols=78 Identities=17% Similarity=0.281 Sum_probs=56.9
Q ss_pred CCCChHHHHHHHhhcCCCCCCcEEEcCCCCeEEEeCCchhhhhhccc-ccCCCChhHHHhhhcccC----ccccCCCCce
Q 018495 8 NVIAPFVMKTYQMVNDPTTDSLISWGKANNSFIVVDPLDFSQRILPA-YFKHNNFSSFVRQLNTYG----FRKVDPDKWE 82 (355)
Q Consensus 8 ~~~p~Fl~KLy~mLed~~~~~iIsWs~~G~sFvV~d~~~F~~~VLP~-yFKh~nfsSFvRQLN~YG----FrKv~pd~~e 82 (355)
++.-....=|.++|+|+++.++|+|...+.-|.+.|+++.++.-=.+ -=..-+|..+-|-|..|- .+||...+..
T Consensus 5 ~g~i~LwqFLl~LL~d~~~~~~I~W~~~~g~Fkl~dp~~VArlWG~rKnkp~MnYeKlSRaLRyYY~k~ii~Kv~Gkr~v 84 (102)
T 2ypr_A 5 SGQIQLWQFLLELLADRANAGCIAWEGGHGEFKLTDPDEVARRWGERKSKPNMNYDKLSRALRYYYDKNIMSKVHGKRYA 84 (102)
T ss_dssp CSSCCHHHHHHHHHTCGGGTTTCEECSSTTEEECSSHHHHHHHHHHHTTCTTCCHHHHHHHHTHHHHTTSEEECSSCSSE
T ss_pred CCcEeHHHHHHHHhcCCCCCCcccccCCCceEEecChHHHHHHHHHhcCCCCCCHHHHHHHHHHHHhcCcEEecCCCeEE
Confidence 33444566688999999999999999888999999999888743221 114678999999997763 2355555666
Q ss_pred Eec
Q 018495 83 FAN 85 (355)
Q Consensus 83 F~H 85 (355)
|..
T Consensus 85 YkF 87 (102)
T 2ypr_A 85 YRF 87 (102)
T ss_dssp EEE
T ss_pred EEe
Confidence 653
No 6
>1fli_A FLI-1; transcription/DNA; NMR {Homo sapiens} SCOP: a.4.5.21
Probab=92.29 E-value=0.085 Score=43.37 Aligned_cols=64 Identities=20% Similarity=0.294 Sum_probs=49.1
Q ss_pred CCChHHHHHHHhhcCCCCCCcEEEcCCCCeEEEeCCchhhhhhccc-ccCCCChhHHHhhhcccC
Q 018495 9 VIAPFVMKTYQMVNDPTTDSLISWGKANNSFIVVDPLDFSQRILPA-YFKHNNFSSFVRQLNTYG 72 (355)
Q Consensus 9 ~~p~Fl~KLy~mLed~~~~~iIsWs~~G~sFvV~d~~~F~~~VLP~-yFKh~nfsSFvRQLN~YG 72 (355)
+.-....=|.++|+|++..++|+|..++.-|.+.|+++.++..=.+ -=..-||...-|-|..|-
T Consensus 4 g~~~LwqFL~~LL~d~~~~~~I~W~~~~g~Fklvd~e~VArlWG~rK~kp~MnYeklSRaLRyYY 68 (98)
T 1fli_A 4 GQIQLWQFLLELLSDSANASCITWEGTNGEFKMTDPDEVARRWGERKSKPNMNYDKLSRALRYYY 68 (98)
T ss_dssp SSCCSHHHHHHHHHTCSSCSSEECTTSSSSCEECCHHHHHHHHHHHTCCTTCSSHHHHHHHHHHH
T ss_pred CceeHHHHHHHHhcCcccCCCeEEeCCCCEEEEcCHHHHHHHHHhccCCCCcCHHHHHHHHHHHH
Confidence 3344556677889999999999999988899999999888754322 214678899999887763
No 7
>1awc_A Protein (GA binding protein alpha); complex (transcription regulation/DNA), DNA-binding, nuclear protein, ETS domain, ankyrin repeats; HET: DNA BRU CBR; 2.15A {Mus musculus} SCOP: a.4.5.21
Probab=91.82 E-value=0.074 Score=44.58 Aligned_cols=70 Identities=19% Similarity=0.243 Sum_probs=52.1
Q ss_pred HHHHHhhcCCCCCCcEEEcCCCCeEEEeCCchhhhhhccc-ccCCCChhHHHhhhcccCcc----ccCCCCceEe
Q 018495 15 MKTYQMVNDPTTDSLISWGKANNSFIVVDPLDFSQRILPA-YFKHNNFSSFVRQLNTYGFR----KVDPDKWEFA 84 (355)
Q Consensus 15 ~KLy~mLed~~~~~iIsWs~~G~sFvV~d~~~F~~~VLP~-yFKh~nfsSFvRQLN~YGFr----Kv~pd~~eF~ 84 (355)
.=|.++|+|++..++|+|...+.-|.+.|+++.++..=.+ -=..-||...-|-|..|-=+ ||...+..|.
T Consensus 5 qFLleLL~d~~~~~~I~W~~~~geFkl~d~e~VArlWG~rKnkp~MnYeKlSRaLRyYY~k~ii~Kv~GkrlvY~ 79 (110)
T 1awc_A 5 QFLLELLTDKDARDCISWVGDEGEFKLNQPELVAQKWGQRKNKPTMNYEKLSRALRYYYDGDMICKVQGKRFVYK 79 (110)
T ss_dssp HHHHHHHTCTTTTTTSEECSSSSEEECSSHHHHHHHHHHHHTCTTCCHHHHHHHHHGGGGSSSEEECTTSTTEEE
T ss_pred HHHHHHhcCcccCCceEEeCCCCEEEecCHHHHHHHHHHccCCCCCCHHHHHHHHHHHHhcCCEeeccCCeeEEe
Confidence 3467899999999999999988999999999988754332 22356799999999877422 4444455665
No 8
>1bc8_C SAP-1, protein (SAP-1 ETS domain); DNA-binding domain, winged helix-turn-helix, DNA-binding specificity, transcription/DNA complex; HET: DNA; 1.93A {Homo sapiens} SCOP: a.4.5.21 PDB: 1bc7_C* 1k6o_A 1dux_C*
Probab=91.39 E-value=0.059 Score=43.91 Aligned_cols=74 Identities=16% Similarity=0.306 Sum_probs=55.9
Q ss_pred hHHHHHHHhhcCCCCCCcEEEcCCCCeEEEeCCchhhhhhcc-cccCCCChhHHHhhhcccC---c-cccCCCCceEec
Q 018495 12 PFVMKTYQMVNDPTTDSLISWGKANNSFIVVDPLDFSQRILP-AYFKHNNFSSFVRQLNTYG---F-RKVDPDKWEFAN 85 (355)
Q Consensus 12 ~Fl~KLy~mLed~~~~~iIsWs~~G~sFvV~d~~~F~~~VLP-~yFKh~nfsSFvRQLN~YG---F-rKv~pd~~eF~H 85 (355)
....=|.++|+|++..++|+|...+.-|.+.|+++.++.-=. +-=..-+|...-|-|..|- . +||...+..|..
T Consensus 6 ~Lw~FL~~LL~d~~~~~~I~W~~~~g~Fkl~d~~~VArlWG~rKnk~~MnYeklSRaLRyYY~~~il~Kv~g~r~vY~F 84 (93)
T 1bc8_C 6 TLWQFLLQLLQKPQNKHMICWTSNDGQFKLLQAEEVARLWGIRKNKPNMNYDKLSRALRYYYVKNIIKKVNGQKFVYKF 84 (93)
T ss_dssp CHHHHHHHHTTCGGGTTTSEECSSSSEEECTTHHHHHHHHHHHHTCTTCCHHHHHHHHHHHHHHTSEEECTTSTTEEEE
T ss_pred cHHHHHHHHhcCcccCCceEEeCCCCEEEecCHHHHHHHHHhcCCCCCcCHHHHHHHHHHHHhcCcEEecCCCeEEEEe
Confidence 455668899999999999999988789999999998885433 2224678999999998774 2 255555667764
No 9
>1gvj_A C-ETS-1 protein, P54; transcription, autoinhibition, ETS domain; 1.53A {Homo sapiens} SCOP: a.4.5.21 PDB: 1md0_A 1r36_A 1k78_B 1k79_A* 1k7a_A* 2stt_A* 2stw_A*
Probab=89.27 E-value=0.19 Score=43.97 Aligned_cols=78 Identities=18% Similarity=0.241 Sum_probs=59.0
Q ss_pred CCCChHHHHHHHhhcCCCCCCcEEEcCCCCeEEEeCCchhhhhhccc-ccCCCChhHHHhhhcccCcc----ccCCCCce
Q 018495 8 NVIAPFVMKTYQMVNDPTTDSLISWGKANNSFIVVDPLDFSQRILPA-YFKHNNFSSFVRQLNTYGFR----KVDPDKWE 82 (355)
Q Consensus 8 ~~~p~Fl~KLy~mLed~~~~~iIsWs~~G~sFvV~d~~~F~~~VLP~-yFKh~nfsSFvRQLN~YGFr----Kv~pd~~e 82 (355)
++......=|.++|+|++..++|+|...+.-|.+.|+++.++..=.+ -=..-||...-|-|..|-=+ ||...+..
T Consensus 37 sg~i~LwqFLleLL~d~~~~~~I~Wt~~~~eFklvdpe~VArlWG~rKnkp~MnYeKLSRaLRyYY~k~ii~Kv~Gkrlv 116 (146)
T 1gvj_A 37 SGPIQLWQFLLELLTDKSCQSFISWTGDGWEFKLSDPDEVARRWGKRKNKPKMNYEKLSRGLRYYYDKNIIHKTAGKRYV 116 (146)
T ss_dssp CCSCCHHHHHHHHHTCGGGTTTSEECSSTTEEECSSHHHHHHHHHHHHTCTTCCHHHHHHHHHHHHHTTSEEECTTSSSE
T ss_pred CCceeHHHHHHHHhcCcccCCceEeeCCCCEEEeCCHHHHHHHHHhccCCCCCCHHHHHHHHHHHHhcCcEEecCCCeEE
Confidence 45556667788999999999999999999999999999998854332 22357899999999887433 55555666
Q ss_pred Eec
Q 018495 83 FAN 85 (355)
Q Consensus 83 F~H 85 (355)
|..
T Consensus 117 Y~F 119 (146)
T 1gvj_A 117 YRF 119 (146)
T ss_dssp EEE
T ss_pred EEe
Confidence 663
No 10
>1wwx_A E74-like factor 5 ESE-2B; DNA binding, transcriptional activation and repression, structural genomics; NMR {Homo sapiens} SCOP: a.4.5.21
Probab=87.91 E-value=0.36 Score=40.23 Aligned_cols=78 Identities=13% Similarity=0.212 Sum_probs=56.5
Q ss_pred CCCCCChHHHHHHHhhcCCC-CCCcEEEcC-CCCeEEEeCCchhhhhhccc-ccCCCChhHHHhhhcccC----ccccCC
Q 018495 6 TNNVIAPFVMKTYQMVNDPT-TDSLISWGK-ANNSFIVVDPLDFSQRILPA-YFKHNNFSSFVRQLNTYG----FRKVDP 78 (355)
Q Consensus 6 ~~~~~p~Fl~KLy~mLed~~-~~~iIsWs~-~G~sFvV~d~~~F~~~VLP~-yFKh~nfsSFvRQLN~YG----FrKv~p 78 (355)
.+++......=|.++|.|++ ..++|+|.. +..-|.+.|+++.++.-=.+ -=...+|...-|-|..|- .+||.
T Consensus 4 g~~g~i~LwqFL~eLL~d~~~~~~~I~W~~~~~g~Fkl~d~e~VArlWG~rKnkp~MnYeKlSRaLRyYY~~~ii~Kv~- 82 (107)
T 1wwx_A 4 GSSGSSHLWEFVRDLLLSPEENCGILEWEDREQGIFRVVKSEALAKMWGQRKKNDRMTYEKLSRALRYYYKTGILERVD- 82 (107)
T ss_dssp CCCSSCCHHHHHHHHHHCTTTCCSCCEEEETTTTEEECSCHHHHHHHHHHHHTCTTCCHHHHHHHHHHHHHHTSEECCS-
T ss_pred CCCCcEEHHHHHHHHHcCcccCCCcEEeecCCCCEEEecCHHHHHHHHHhcCCCCCcCHHHHHHHHHHHHhcCcEEecc-
Confidence 35666778888999999986 568999986 46789999999988853221 113678999999998773 23553
Q ss_pred CCceEe
Q 018495 79 DKWEFA 84 (355)
Q Consensus 79 d~~eF~ 84 (355)
.+..|.
T Consensus 83 ~rlvY~ 88 (107)
T 1wwx_A 83 RRLVYK 88 (107)
T ss_dssp SSSEEE
T ss_pred ceEEEE
Confidence 556665
No 11
>3jtg_A ETS-related transcription factor ELF-3; ELF3, protein-DNA complex, type II TGF-beta receptor, activa alternative splicing, cytoplasm; HET: DNA; 2.20A {Mus musculus} SCOP: a.4.5.21
Probab=87.20 E-value=0.3 Score=40.33 Aligned_cols=72 Identities=13% Similarity=0.239 Sum_probs=50.5
Q ss_pred HHHHHHHhhcCCC-CCCcEEEcCC-CCeEEEeCCchhhhhhccc-ccCCCChhHHHhhhcccC----ccccCCCCceEe
Q 018495 13 FVMKTYQMVNDPT-TDSLISWGKA-NNSFIVVDPLDFSQRILPA-YFKHNNFSSFVRQLNTYG----FRKVDPDKWEFA 84 (355)
Q Consensus 13 Fl~KLy~mLed~~-~~~iIsWs~~-G~sFvV~d~~~F~~~VLP~-yFKh~nfsSFvRQLN~YG----FrKv~pd~~eF~ 84 (355)
...=|.++|.|++ ..++|+|... ..-|.+.|+++.++.-=.+ -=...+|..+-|-|..|- .+||...+..|.
T Consensus 7 LwqFL~~LL~d~~~~~~~I~W~~~~~g~Fkl~dp~~VArlWG~rKnkp~MnYeKlSRaLRyYy~~~ii~Kv~G~r~vY~ 85 (103)
T 3jtg_A 7 LWEFIRDILIHPELNEGLMKWENRHEGVFKFLRSEAVAQLWGQKKKNSNMTYEKLSRAMRYYYKREILERVDGRRLVYK 85 (103)
T ss_dssp HHHHHHHHHTCGGGCSSCEEEEETTTTEEEESSHHHHHHHHHHHTTCTTCCHHHHHHHHHHHHHTTSBCCCTTCTTEEE
T ss_pred HHHHHHHHHcCcccCCCccccccCCCceEEecCHHHHHHHHHhccCCCCcCHHHHHHHHHHHHhcCcEEecCCceEEEE
Confidence 4455778899987 5689999974 5589999999888753221 114678999999997772 234555556655
No 12
>2dao_A Transcription factor ETV6; ETS domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=86.89 E-value=0.92 Score=38.39 Aligned_cols=77 Identities=19% Similarity=0.324 Sum_probs=57.1
Q ss_pred CCCChHHHHHHHhhcCCCCCCcEEEcC-CCCeEEEeCCchhhhhhcc-cccCCCChhHHHhhhccc---C-ccccCCCCc
Q 018495 8 NVIAPFVMKTYQMVNDPTTDSLISWGK-ANNSFIVVDPLDFSQRILP-AYFKHNNFSSFVRQLNTY---G-FRKVDPDKW 81 (355)
Q Consensus 8 ~~~p~Fl~KLy~mLed~~~~~iIsWs~-~G~sFvV~d~~~F~~~VLP-~yFKh~nfsSFvRQLN~Y---G-FrKv~pd~~ 81 (355)
.+....-.=|.++|+|+++.++|+|.. ++.-|.+.|+++.++..=. +-=..-||...-|-|..| | -+||...+.
T Consensus 6 ~g~~~LwqFLleLL~d~~~~~~I~W~~~~~g~Fklvdp~~VArlWG~rKnkp~MnYeKLSRaLRyYY~k~ii~Kv~G~r~ 85 (118)
T 2dao_A 6 SGCRLLWDYVYQLLSDSRYENFIRWEDKESKIFRIVDPNGLARLWGNHKNRTNMTYEKMSRALRHYYKLNIIRKEPGQRL 85 (118)
T ss_dssp CCCCCHHHHHHHHHHCGGGTTTEEEEEGGGTEEEESCHHHHHHHHHHHTTCSSCCHHHHHHHHHHHHHHTSEECCSSSSS
T ss_pred CcchHHHHHHHHHhCCcccCCceEeeCCCCCeEEEeCHHHHHHHHHhccCCCCcCHHHHHHHHHHHHhcCCEEeccCCeE
Confidence 344556677889999999999999987 4558999999988875433 222457899999999887 3 335555666
Q ss_pred eEe
Q 018495 82 EFA 84 (355)
Q Consensus 82 eF~ 84 (355)
.|.
T Consensus 86 vY~ 88 (118)
T 2dao_A 86 LFR 88 (118)
T ss_dssp EEE
T ss_pred EEE
Confidence 666
No 13
>1hbx_G ETS-domain protein ELK-4; gene regulation, transcription complex; 3.15A {Homo sapiens} SCOP: a.4.5.21
Probab=86.81 E-value=0.19 Score=44.49 Aligned_cols=74 Identities=16% Similarity=0.301 Sum_probs=55.7
Q ss_pred hHHHHHHHhhcCCCCCCcEEEcCCCCeEEEeCCchhhhhhcc-cccCCCChhHHHhhhcccCc----cccCCCCceEec
Q 018495 12 PFVMKTYQMVNDPTTDSLISWGKANNSFIVVDPLDFSQRILP-AYFKHNNFSSFVRQLNTYGF----RKVDPDKWEFAN 85 (355)
Q Consensus 12 ~Fl~KLy~mLed~~~~~iIsWs~~G~sFvV~d~~~F~~~VLP-~yFKh~nfsSFvRQLN~YGF----rKv~pd~~eF~H 85 (355)
....=|.++|.|++..++|+|...+.-|.+.|+++.++..=. +-=..-+|...-|-|..|-= +||...+..|..
T Consensus 7 ~LWqFLleLL~d~~~~~~I~Wt~~~geFklvdpe~VArLWG~rKnkp~MnYeKLSRALRyYY~k~Ii~KV~GqrlvYkF 85 (157)
T 1hbx_G 7 TLWQFLLQLLQKPQNKHMICWTSNDGQFKLLQAEEVARLWGIRKNKPNMNYDKLSRALRYYYVKNIIKKVNGQKFVYKF 85 (157)
T ss_dssp CHHHHTTTSSSCGGGTTTEEECSSSSCEEETTHHHHHHHHHHGGGCTTCCHHHHHHHHHHHHHTTSEEECSSCTTEEEE
T ss_pred cHHHHHHHHhcCcccCCceEEeCCCCEEEecCcHHHHHHHHhccCCCCcCHHHHHHHHHHHHhcCcEEecCCCeEEEee
Confidence 345567789999999999999988889999999998886433 22246789999999988742 245556666664
No 14
>2nny_A C-ETS-1 protein, P54; protein-DNA complex, transcription/DNA complex; 2.58A {Homo sapiens} PDB: 3ri4_A 3mfk_A 1mdm_B
Probab=86.70 E-value=0.66 Score=41.51 Aligned_cols=76 Identities=18% Similarity=0.265 Sum_probs=56.9
Q ss_pred CCChHHHHHHHhhcCCCCCCcEEEcCCCCeEEEeCCchhhhhhccc-ccCCCChhHHHhhhcccCcc----ccCCCCceE
Q 018495 9 VIAPFVMKTYQMVNDPTTDSLISWGKANNSFIVVDPLDFSQRILPA-YFKHNNFSSFVRQLNTYGFR----KVDPDKWEF 83 (355)
Q Consensus 9 ~~p~Fl~KLy~mLed~~~~~iIsWs~~G~sFvV~d~~~F~~~VLP~-yFKh~nfsSFvRQLN~YGFr----Kv~pd~~eF 83 (355)
+.-....=|.++|+|++..++|+|...+.-|.+.|+++.++..=.+ -=..-||...-|-|..|-=+ ||...+..|
T Consensus 63 g~i~LwqFLleLL~d~~~~~~I~Wt~~~~eFklvdpe~VArlWG~rKnkp~MnYeKLSRaLRyYY~k~ii~Kv~GkrlvY 142 (171)
T 2nny_A 63 GPIQLWQFLLELLTDKSSQSFISWTGDGWEFKLSDPDEVARRWGKRKNKPKMNYEKLSRGLRYYYDKNIIHKTAGKRYVY 142 (171)
T ss_dssp SSCCHHHHHHHHHTCTGGGGTCEECSSTTEEECSSHHHHHHHHHHHHTCTTCCHHHHHHHHHGGGTTTSEEECTTSTTEE
T ss_pred CceeHHHHHHHHhcCcccCCceEeeCCCCEEEeCCHHHHHHHHHhccCCCCCCHHHHHHHHHHHHhcCcEeecCCCeEEE
Confidence 3444556678999999999999999999999999999998854332 22357899999999887534 455555666
Q ss_pred e
Q 018495 84 A 84 (355)
Q Consensus 84 ~ 84 (355)
.
T Consensus 143 ~ 143 (171)
T 2nny_A 143 R 143 (171)
T ss_dssp E
T ss_pred E
Confidence 6
No 15
>3e98_A GAF domain of unknown function; structural genomics, joint center for structural genomics, JCSG, protein structure initiative, PSI-2; HET: MSE; 2.43A {Pseudomonas aeruginosa}
Probab=86.10 E-value=1.8 Score=40.29 Aligned_cols=81 Identities=9% Similarity=0.158 Sum_probs=44.6
Q ss_pred ceEecccccccccccccceeeccCCCCCccccccccCCCCCCCCChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 018495 81 WEFANEWFLRGQKHLLKNIVRRKHSSNRSAHHMMMRGGAGDQDLDDEEIVMEIARLRQEQKSLDEELQGMNKRLEATERR 160 (355)
Q Consensus 81 ~eF~He~F~RG~~~LL~~IkRkk~~s~~~s~~~q~~~~~~~~~~~~~~L~~EIerLKreq~~L~qEL~~Lrqr~q~~Eqr 160 (355)
|-=.||.|.-.+++||..|+=.-+... .-.-.+-++++|++++..|+.+|..|-..-..-++.
T Consensus 39 yL~~~PdFf~~~~~Ll~~L~lph~~~~-----------------aVSL~erQ~~~LR~r~~~Le~~L~~Li~~A~~Ne~l 101 (252)
T 3e98_A 39 YLSQHPEFFVEHDELIPELRIPHQPGD-----------------AVSLVERQVRLLRERNIEMRHRLSQLMDVARENDRL 101 (252)
T ss_dssp ---------------------------------------------CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHhCCHHHhhCHHHHHhCCCCCCCCC-----------------cccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 334899999999999998865333211 123455789999999999999999999988888888
Q ss_pred HHHHHHHHHHhhcCCCcH
Q 018495 161 PEQMMAFLYKVVEDPDLL 178 (355)
Q Consensus 161 qqqMm~FLakvvqnP~fl 178 (355)
.+++..+..+++.-.++-
T Consensus 102 ~~~~~~l~l~LL~a~sl~ 119 (252)
T 3e98_A 102 FDKTRRLVLDLLDATSLE 119 (252)
T ss_dssp HHHHHHHHHHHHHCCSHH
T ss_pred HHHHHHHHHHHhcCCCHH
Confidence 999999988888766653
No 16
>1yo5_C SAM pointed domain containing ETS transcription factor; protein-DNA complex, double helix, transcription/DNA complex; 2.00A {Homo sapiens} SCOP: a.4.5.21
Probab=82.82 E-value=0.51 Score=38.62 Aligned_cols=67 Identities=12% Similarity=0.137 Sum_probs=50.3
Q ss_pred CCCChHHHHHHHhhcCCC-CCCcEEEcC-CCCeEEEeCCchhhhhhcc-cccCCCChhHHHhhhcccCcc
Q 018495 8 NVIAPFVMKTYQMVNDPT-TDSLISWGK-ANNSFIVVDPLDFSQRILP-AYFKHNNFSSFVRQLNTYGFR 74 (355)
Q Consensus 8 ~~~p~Fl~KLy~mLed~~-~~~iIsWs~-~G~sFvV~d~~~F~~~VLP-~yFKh~nfsSFvRQLN~YGFr 74 (355)
++.-....=|.++|+|++ ..++|+|.. ++.-|.+.|+++.++..=. +-=..-||...-|-|..|--+
T Consensus 8 ~~~i~LwqFL~eLL~d~~~~~~~I~W~~~~~g~Fkl~d~~~VArlWG~rKnkp~MnYeklSRaLRyYY~~ 77 (97)
T 1yo5_C 8 SQPIHLWQFLKELLLKPHSYGRFIRWLNKEKGIFKIEDSAQVARLWGIRKNRPAMNYDKLSRSIRQYYKK 77 (97)
T ss_dssp -CCCCHHHHHHHHHHCHHHHTTTEEEEETTTTEEEESCHHHHHHHHHHHHTCTTCCHHHHHHHHHHTTTT
T ss_pred CCeeEHHHHHHHHhcCcccCCCceEeecCCCCEEEecCHHHHHHHHHhcCCCCCcCHHHHHHHHHHHHhc
Confidence 445556777899999986 478999984 5778999999988885332 222467899999999888544
No 17
>2yy0_A C-MYC-binding protein; conserved hypothetical protein, structural genomics, NPPSFA, national project on protein structural and functional analyses; 2.40A {Homo sapiens}
Probab=82.03 E-value=1.9 Score=31.46 Aligned_cols=30 Identities=20% Similarity=0.400 Sum_probs=15.8
Q ss_pred ChHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 018495 125 DDEEIVMEIARLRQEQKSLDEELQGMNKRL 154 (355)
Q Consensus 125 ~~~~L~~EIerLKreq~~L~qEL~~Lrqr~ 154 (355)
+-+.|..|++.||.+.+.|..++..++.++
T Consensus 20 d~eaLk~E~~eLk~k~~~L~~~~~el~~~l 49 (53)
T 2yy0_A 20 EIELLRLELAEMKEKYEAIVEENKKLKAKL 49 (53)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 444555555555555555555555555544
No 18
>2lf8_A Transcription factor ETV6; auto-inhibition; NMR {Mus musculus}
Probab=81.12 E-value=0.35 Score=41.44 Aligned_cols=58 Identities=21% Similarity=0.375 Sum_probs=41.1
Q ss_pred HHHHHhhcCCCCCCcEEEcCC-CCeEEEeCCchhhhhhccc-ccCCCChhHHHhhhcccC
Q 018495 15 MKTYQMVNDPTTDSLISWGKA-NNSFIVVDPLDFSQRILPA-YFKHNNFSSFVRQLNTYG 72 (355)
Q Consensus 15 ~KLy~mLed~~~~~iIsWs~~-G~sFvV~d~~~F~~~VLP~-yFKh~nfsSFvRQLN~YG 72 (355)
.=|.++|+|+++.++|+|... +.-|.+.|+++.++..=.+ -=+.-||...-|-|..|-
T Consensus 9 qFLleLL~d~~~~~~I~Wt~k~~geFklvdpe~VArlWG~rKnkp~MnYeKLSRALRyYY 68 (128)
T 2lf8_A 9 DYVYQLLSDSRYENFIRWEDKESKIFRIVDPNGLARLWGNHKNRTNMTYEKMSRALRHYY 68 (128)
Confidence 446788999999999999874 4589999998777743221 112356777777776663
No 19
>1deb_A APC protein, adenomatous polyposis coli protein; coiled coil, tumor suppressor, structural protein; 2.40A {Homo sapiens} SCOP: h.1.18.1
Probab=79.57 E-value=11 Score=27.46 Aligned_cols=41 Identities=20% Similarity=0.371 Sum_probs=33.3
Q ss_pred ChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHH
Q 018495 125 DDEEIVMEIARLRQEQKSLDEELQGMNKRLEATERRPEQMM 165 (355)
Q Consensus 125 ~~~~L~~EIerLKreq~~L~qEL~~Lrqr~q~~EqrqqqMm 165 (355)
....|..+++.||.++..|.+||.+--.++..+|..--.|-
T Consensus 4 sYdQL~~QVe~Lk~ENshLrrEL~dNS~~lskLE~ets~mK 44 (54)
T 1deb_A 4 SYDQLLKQVEALKMENSNLRQELEDNSNHLTKLETEASNMK 44 (54)
T ss_dssp CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred cHHHHHHHHHHHHHHhhHHHHHHHhhHHHHHHHHhhhhhHH
Confidence 45678899999999999999999998888877776544443
No 20
>1pue_E Protein (transcription factor PU.1 (TF PU.1)); complex (transcription regulating/DNA), oncogene, transforming protein, DNA- binding, activator; HET: DNA; 2.10A {Mus musculus} SCOP: a.4.5.21
Probab=79.36 E-value=0.82 Score=36.85 Aligned_cols=69 Identities=17% Similarity=0.286 Sum_probs=48.4
Q ss_pred HHHHHhhcCCCCCCcEEEcC-CCCeEEEe--CCchhhhhhccc--ccCCCChhHHHhhhcccC----ccccCCCCceEe
Q 018495 15 MKTYQMVNDPTTDSLISWGK-ANNSFIVV--DPLDFSQRILPA--YFKHNNFSSFVRQLNTYG----FRKVDPDKWEFA 84 (355)
Q Consensus 15 ~KLy~mLed~~~~~iIsWs~-~G~sFvV~--d~~~F~~~VLP~--yFKh~nfsSFvRQLN~YG----FrKv~pd~~eF~ 84 (355)
.=|.++|+|++..++|+|.. +..-|.+. |+++.++.-=.+ .=+.-+|...-|-|..|- -+||. .+..|.
T Consensus 6 qFL~~LL~d~~~~~~I~W~~~~~g~Fk~~~~~~e~VArlWG~rK~Nk~~MnYeKlSRaLRyYY~~~ii~Kv~-~r~vY~ 83 (89)
T 1pue_E 6 QFLLDLLRSGDMKDSIWWVDKDKGTFQFSSKHKEALAHRWGIQKGNRKKMTYEKMARALRNYGKTGEVKKVK-KKLTYQ 83 (89)
T ss_dssp HHHHHHHHHTCCTTTEEEEETTTTEEEECTTTHHHHHHHHHHHHTCSSCCCHHHHHHHHHHHHHHSSEEECS-STTEEE
T ss_pred HHHHHHhcCcccCCceEeecCCCcEEEEecCChHHHHHHhhcccCCCCCcCHHHHHHHHHHHHHcCceeecc-ceEEEe
Confidence 44778899999999999986 44568876 788888753332 123678999999998773 23454 455554
No 21
>3ra3_B P2F; coiled coil domain, fiber, KIH interactions, synthetic biolo helical reconstruction, de novo protein; HET: PHI; 2.31A {Synthetic}
Probab=76.76 E-value=2.3 Score=26.91 Aligned_cols=26 Identities=31% Similarity=0.529 Sum_probs=15.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHH
Q 018495 133 IARLRQEQKSLDEELQGMNKRLEATE 158 (355)
Q Consensus 133 IerLKreq~~L~qEL~~Lrqr~q~~E 158 (355)
|.+||+.+..|.+|+..|.-.+-.+|
T Consensus 2 irrlkqknarlkqeiaaleyeiaale 27 (28)
T 3ra3_B 2 IRRLKQKNARLKQEIAALEYEIAALE 27 (28)
T ss_dssp -CHHHHHHHHHHHHHHHHHHHHHHHC
T ss_pred hhHHHHhhhHHHHHHHHHHHHHHHhc
Confidence 45667777777777766666554443
No 22
>2jee_A YIIU; FTSZ, septum, coiled-coil, cell division, cell cycle, hypothetical protein; 2.8A {Escherichia coli}
Probab=76.65 E-value=6.1 Score=31.33 Aligned_cols=22 Identities=36% Similarity=0.589 Sum_probs=16.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHH
Q 018495 128 EIVMEIARLRQEQKSLDEELQG 149 (355)
Q Consensus 128 ~L~~EIerLKreq~~L~qEL~~ 149 (355)
-|..||+.||+++..|.+|...
T Consensus 24 lLqmEieELKekN~~L~~e~~e 45 (81)
T 2jee_A 24 LLQMEIEELKEKNNSLSQEVQN 45 (81)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHH
Confidence 4567888888888887776666
No 23
>1hjb_A Ccaat/enhancer binding protein beta; transcription/DNA, protein-DNA complex; HET: DNA; 3.0A {Homo sapiens} SCOP: h.1.3.1
Probab=73.91 E-value=5.6 Score=31.77 Aligned_cols=33 Identities=15% Similarity=0.311 Sum_probs=25.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 018495 127 EEIVMEIARLRQEQKSLDEELQGMNKRLEATER 159 (355)
Q Consensus 127 ~~L~~EIerLKreq~~L~qEL~~Lrqr~q~~Eq 159 (355)
..+..+++.|.+++..|..+|..|++++..+..
T Consensus 39 ~e~~~r~~~Le~EN~~Lr~~v~~L~~E~~~Lr~ 71 (87)
T 1hjb_A 39 LETQHKVLELTAENERLQKKVEQLSRELSTLRN 71 (87)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 467788888999999999988888887755443
No 24
>1t2k_D Cyclic-AMP-dependent transcription factor ATF-2; protein DNA complex, transcription/DNA complex; 3.00A {Homo sapiens} SCOP: h.1.3.1
Probab=73.30 E-value=8.1 Score=28.24 Aligned_cols=33 Identities=9% Similarity=0.118 Sum_probs=26.3
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 018495 126 DEEIVMEIARLRQEQKSLDEELQGMNKRLEATE 158 (355)
Q Consensus 126 ~~~L~~EIerLKreq~~L~qEL~~Lrqr~q~~E 158 (355)
...|+.+++.|..++..|..+|..|+.++..+.
T Consensus 24 ~~~Le~~~~~L~~~n~~L~~~i~~L~~e~~~Lk 56 (61)
T 1t2k_D 24 VQSLEKKAEDLSSLNGQLQSEVTLLRNEVAQLK 56 (61)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 347788888889999999888888888776543
No 25
>2wt7_A Proto-oncogene protein C-FOS; transcription, transcription regulation, nucleus, activator, repressor, DNA-binding, phosphoprotein, differentiation; 2.30A {Mus musculus} PDB: 1fos_E* 1a02_F* 1s9k_D
Probab=73.00 E-value=9.4 Score=28.19 Aligned_cols=33 Identities=24% Similarity=0.377 Sum_probs=25.9
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 018495 126 DEEIVMEIARLRQEQKSLDEELQGMNKRLEATE 158 (355)
Q Consensus 126 ~~~L~~EIerLKreq~~L~qEL~~Lrqr~q~~E 158 (355)
...|+.+++.|+.++..|..||..|+..+..+.
T Consensus 25 ~~~Le~~v~~L~~~n~~L~~ei~~L~~e~~~Lk 57 (63)
T 2wt7_A 25 TDTLQAETDQLEDEKSALQTEIANLLKEKEKLE 57 (63)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 347888899999999999999888877765443
No 26
>4dzn_A Coiled-coil peptide CC-PIL; de novo protein; HET: PHI; 1.59A {Synthetic} PDB: 4dzm_A* 4dzl_A* 4dzk_A 1u0i_A 1u0i_B
Probab=72.33 E-value=6.2 Score=25.77 Aligned_cols=25 Identities=28% Similarity=0.434 Sum_probs=14.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH
Q 018495 128 EIVMEIARLRQEQKSLDEELQGMNK 152 (355)
Q Consensus 128 ~L~~EIerLKreq~~L~qEL~~Lrq 152 (355)
.|..||..||++..+|.-|+..|+|
T Consensus 6 alkqeiaalkkeiaalkfeiaalkq 30 (33)
T 4dzn_A 6 ALKQEIAALKKEIAALKFEIAALKQ 30 (33)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHc
Confidence 4555666666666666666665554
No 27
>2yy0_A C-MYC-binding protein; conserved hypothetical protein, structural genomics, NPPSFA, national project on protein structural and functional analyses; 2.40A {Homo sapiens}
Probab=70.85 E-value=6 Score=28.76 Aligned_cols=33 Identities=18% Similarity=0.198 Sum_probs=28.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHH
Q 018495 130 VMEIARLRQEQKSLDEELQGMNKRLEATERRPE 162 (355)
Q Consensus 130 ~~EIerLKreq~~L~qEL~~Lrqr~q~~Eqrqq 162 (355)
..+++.||.++..|..++..|+++++.+..+..
T Consensus 18 ~~d~eaLk~E~~eLk~k~~~L~~~~~el~~~l~ 50 (53)
T 2yy0_A 18 NPEIELLRLELAEMKEKYEAIVEENKKLKAKLA 50 (53)
T ss_dssp CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHT
T ss_pred hhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 468999999999999999999999988776543
No 28
>1kd8_A GABH AIV, GCN4 acid base heterodimer acid-D12IA16V; coiled coil heterodimer, de novo protein; 1.90A {Synthetic} SCOP: h.1.3.1 PDB: 1kdd_A 1kd9_A
Probab=68.79 E-value=12 Score=25.34 Aligned_cols=30 Identities=17% Similarity=0.295 Sum_probs=26.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 018495 128 EIVMEIARLRQEQKSLDEELQGMNKRLEAT 157 (355)
Q Consensus 128 ~L~~EIerLKreq~~L~qEL~~Lrqr~q~~ 157 (355)
.|+.+++.|-.++..|..|+.+|+.-+-..
T Consensus 5 QLE~kVEeLl~~~~~Le~EV~RL~~ll~~~ 34 (36)
T 1kd8_A 5 QLEAEVEEIESEVWHLENEVARLEKENAEC 34 (36)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhhHHHHHHHHHHHHHhccc
Confidence 678899999999999999999998876544
No 29
>1ci6_A Transcription factor ATF-4; BZIP; 2.60A {Homo sapiens} SCOP: h.1.3.1
Probab=68.34 E-value=11 Score=28.02 Aligned_cols=32 Identities=19% Similarity=0.336 Sum_probs=25.3
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 018495 126 DEEIVMEIARLRQEQKSLDEELQGMNKRLEAT 157 (355)
Q Consensus 126 ~~~L~~EIerLKreq~~L~qEL~~Lrqr~q~~ 157 (355)
...|+.+++.|+.++..|..++..|+..+..+
T Consensus 25 ~~~le~~~~~L~~~N~~L~~~i~~L~~E~~~L 56 (63)
T 1ci6_A 25 QEALTGECKELEKKNEALKERADSLAKEIQYL 56 (63)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 45778888888888888888888888776543
No 30
>1kd8_B GABH BLL, GCN4 acid base heterodimer base-D12LA16L; coiled coil heterodimer, de novo protein; 1.90A {Synthetic} SCOP: h.1.3.1 PDB: 1kd9_B 1kdd_B
Probab=66.92 E-value=13 Score=25.20 Aligned_cols=29 Identities=10% Similarity=0.270 Sum_probs=25.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 018495 128 EIVMEIARLRQEQKSLDEELQGMNKRLEA 156 (355)
Q Consensus 128 ~L~~EIerLKreq~~L~qEL~~Lrqr~q~ 156 (355)
.|+..++.|..++..|..|+.+|+.-+-.
T Consensus 5 QLE~KVEeLl~~~~~Le~eV~RLk~ll~~ 33 (36)
T 1kd8_B 5 QLKAKVEELKSKLWHLKNKVARLKKKNAE 33 (36)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhHHHHHHHHHHHHHhcc
Confidence 67889999999999999999999876643
No 31
>4dzn_A Coiled-coil peptide CC-PIL; de novo protein; HET: PHI; 1.59A {Synthetic} PDB: 4dzm_A* 4dzl_A* 4dzk_A 1u0i_A 1u0i_B
Probab=66.74 E-value=12 Score=24.40 Aligned_cols=28 Identities=32% Similarity=0.428 Sum_probs=22.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 018495 131 MEIARLRQEQKSLDEELQGMNKRLEATE 158 (355)
Q Consensus 131 ~EIerLKreq~~L~qEL~~Lrqr~q~~E 158 (355)
.||..||++..+|..|+..|+=.+-.+.
T Consensus 2 geiaalkqeiaalkkeiaalkfeiaalk 29 (33)
T 4dzn_A 2 GEIAALKQEIAALKKEIAALKFEIAALK 29 (33)
T ss_dssp CHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred chHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4788999999999999998887765543
No 32
>2dgc_A Protein (GCN4); basic domain, leucine zipper, DNA binding, eukaryotic regulatory protein, transcription/DNA complex; HET: DNA; 2.20A {Saccharomyces cerevisiae} SCOP: h.1.3.1 PDB: 1dgc_A* 1ld4_E 1ysa_C* 3p8m_D
Probab=66.39 E-value=6 Score=29.53 Aligned_cols=30 Identities=13% Similarity=0.241 Sum_probs=24.5
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 018495 126 DEEIVMEIARLRQEQKSLDEELQGMNKRLE 155 (355)
Q Consensus 126 ~~~L~~EIerLKreq~~L~qEL~~Lrqr~q 155 (355)
...|+.+++.|+.++..|..|+..|++.+.
T Consensus 32 ~~~Le~~v~~L~~eN~~L~~ev~~Lr~~l~ 61 (63)
T 2dgc_A 32 MKQLEDKVEELLSKNYHLENEVARLKKLVG 61 (63)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHC--
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 347889999999999999999999887663
No 33
>3mq7_A Bone marrow stromal antigen 2; HIV, antiviral protein; 2.28A {Homo sapiens} PDB: 3mqc_A 3mqb_A 3mkx_A 3nwh_A 2xg7_A* 2x7a_A
Probab=66.08 E-value=11 Score=31.76 Aligned_cols=25 Identities=16% Similarity=0.323 Sum_probs=9.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH
Q 018495 129 IVMEIARLRQEQKSLDEELQGMNKR 153 (355)
Q Consensus 129 L~~EIerLKreq~~L~qEL~~Lrqr 153 (355)
|.+||+.|++..+....||.+||..
T Consensus 76 LqgEI~~Lnq~Lq~a~ae~erlr~~ 100 (121)
T 3mq7_A 76 LEGEITTLNHKLQDASAEVERLRRE 100 (121)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhh
Confidence 3333333333333333333333333
No 34
>3m48_A General control protein GCN4; leucine zipper, synthetic peptide, alpha helix, activa amino-acid biosynthesis, DNA-binding, nucleus; 1.45A {Synthetic} PDB: 3i1g_A 2ahp_A* 2o7h_A
Probab=65.48 E-value=10 Score=25.35 Aligned_cols=27 Identities=15% Similarity=0.324 Sum_probs=23.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 018495 128 EIVMEIARLRQEQKSLDEELQGMNKRL 154 (355)
Q Consensus 128 ~L~~EIerLKreq~~L~qEL~~Lrqr~ 154 (355)
.|+..++.|-.++..|..|+.+|+.-+
T Consensus 4 QLE~kVEeLl~~n~~Le~EV~RLk~Ll 30 (33)
T 3m48_A 4 QLEAKVEELLSKNWNLENEVARLKKLV 30 (33)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHhHHHHHHHHHHHHHh
Confidence 578899999999999999999988643
No 35
>3vmx_A Voltage-gated hydrogen channel 1; coiled-coil, ION channel, ION transport, membrane protein; 1.45A {Mus musculus}
Probab=64.04 E-value=30 Score=24.90 Aligned_cols=40 Identities=23% Similarity=0.261 Sum_probs=30.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHH
Q 018495 130 VMEIARLRQEQKSLDEELQGMNKRLEATERRPEQMMAFLY 169 (355)
Q Consensus 130 ~~EIerLKreq~~L~qEL~~Lrqr~q~~EqrqqqMm~FLa 169 (355)
+.+|.+||+-+..|-+.+..|+......|+.+..+-.+|.
T Consensus 3 eq~l~kLKe~n~~L~~kv~~Le~~c~~~eQEieRL~~LLk 42 (48)
T 3vmx_A 3 ERQILRLKQINIQLATKIQHLEFSCSEKEQEIERLNKLLK 42 (48)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHccHHHHHHHHHHHHHH
Confidence 4578899999999998898888888887777665554443
No 36
>1a93_B MAX protein, coiled coil, LZ; leucine zipper, 2D solution structure, H-bonds, buried salt bridge, proto-oncogene, nuclear protein; NMR {Mus musculus} SCOP: h.1.3.1 PDB: 2a93_B
Probab=63.90 E-value=7.2 Score=26.24 Aligned_cols=24 Identities=13% Similarity=0.401 Sum_probs=18.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHH
Q 018495 127 EEIVMEIARLRQEQKSLDEELQGM 150 (355)
Q Consensus 127 ~~L~~EIerLKreq~~L~qEL~~L 150 (355)
.....+|+.||+++..|..++..|
T Consensus 10 ~a~qqDIddlkrQN~~Le~Qir~l 33 (34)
T 1a93_B 10 DTHQQDIDDLKRQNALLEQQVRAL 33 (34)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHC
T ss_pred HhhHhhHHHHHHHHHHHHHHHHhc
Confidence 355678899999999998888654
No 37
>2w83_C C-JUN-amino-terminal kinase-interacting protein 4; golgi apparatus, protein transport, ER-golgi transport, ARF, GTPase, effector, myristate; HET: GTP; 1.93A {Homo sapiens}
Probab=63.73 E-value=12 Score=29.44 Aligned_cols=40 Identities=15% Similarity=0.327 Sum_probs=27.9
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHH
Q 018495 126 DEEIVMEIARLRQEQKSLDEELQGMNKRLEATERRPEQMM 165 (355)
Q Consensus 126 ~~~L~~EIerLKreq~~L~qEL~~Lrqr~q~~EqrqqqMm 165 (355)
...|..+|+.|-.++.+|..|+..+++-...++.++..|-
T Consensus 32 k~DLI~rvdELt~E~e~l~~El~s~~~~~~r~~~ri~elE 71 (77)
T 2w83_C 32 KNDLIAKVDELTCEKDVLQGELEAVKQAKLKLEEKNRELE 71 (77)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHC----
T ss_pred HHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4467788888888888888888888777766666655543
No 38
>1g6u_A Domain swapped dimer; designed three helix bundle, de novo protein; 1.48A {Synthetic} SCOP: k.9.1.1
Probab=61.69 E-value=33 Score=24.03 Aligned_cols=33 Identities=30% Similarity=0.531 Sum_probs=17.1
Q ss_pred HHHHHHHHHH------HHHHHHHHHHHHHHHHHHHHHHh
Q 018495 128 EIVMEIARLR------QEQKSLDEELQGMNKRLEATERR 160 (355)
Q Consensus 128 ~L~~EIerLK------req~~L~qEL~~Lrqr~q~~Eqr 160 (355)
.+..|++.|| ++..+|..||+.|.+++-.+..+
T Consensus 4 alkselqalkkegfspeelaaleselqalekklaalksk 42 (48)
T 1g6u_A 4 ALKSELQALKKEGFSPEELAALESELQALEKKLAALKSK 42 (48)
T ss_dssp HHHHHHHHHHHTTCSHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3445555555 24455566666555555444433
No 39
>1gu4_A CAAT/enhancer binding protein beta; transcription/DNA, protein-DNA complex, transcription factor, BZIP, C/EBP; 1.80A {Homo sapiens} SCOP: h.1.3.1 PDB: 1gtw_A 1gu5_A 1h88_A 1h8a_A 1io4_A 2e43_A* 2e42_A* 1h89_A 1ci6_B 1nwq_A
Probab=60.78 E-value=11 Score=29.48 Aligned_cols=32 Identities=16% Similarity=0.317 Sum_probs=24.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 018495 127 EEIVMEIARLRQEQKSLDEELQGMNKRLEATE 158 (355)
Q Consensus 127 ~~L~~EIerLKreq~~L~qEL~~Lrqr~q~~E 158 (355)
..+..+++.|.+++..|..+|..|++.+..+.
T Consensus 39 ~e~~~r~~~L~~eN~~L~~~v~~L~~E~~~Lr 70 (78)
T 1gu4_A 39 LETQHKVLELTAENERLQKKVEQLSRELSTLR 70 (78)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 46777888888888888888888887765443
No 40
>2l5g_B Putative uncharacterized protein NCOR2, G protein pathway suppressor 2; GPS2, SMRT, TBL1, CO-repressor, transcription regulator; NMR {Homo sapiens}
Probab=60.73 E-value=20 Score=25.12 Aligned_cols=36 Identities=17% Similarity=0.433 Sum_probs=30.4
Q ss_pred ChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 018495 125 DDEEIVMEIARLRQEQKSLDEELQGMNKRLEATERR 160 (355)
Q Consensus 125 ~~~~L~~EIerLKreq~~L~qEL~~Lrqr~q~~Eqr 160 (355)
..++|...|+++-+|...-.++|..++.++..+|..
T Consensus 3 tk~~l~qkI~kVdrEI~Kte~kI~~lqkKlkeLee~ 38 (42)
T 2l5g_B 3 SKEELIQNMDRVDREITMVEQQISKLKKKQQQLEEE 38 (42)
T ss_dssp SSSHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred cHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 456888999999999999999999999998877653
No 41
>2xdj_A Uncharacterized protein YBGF; unknown function; 1.82A {Escherichia coli} PDB: 2wz7_A
Probab=59.57 E-value=26 Score=27.59 Aligned_cols=42 Identities=14% Similarity=0.238 Sum_probs=21.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHH
Q 018495 128 EIVMEIARLRQEQKSLDEELQGMNKRLEATERRPEQMMAFLY 169 (355)
Q Consensus 128 ~L~~EIerLKreq~~L~qEL~~Lrqr~q~~EqrqqqMm~FLa 169 (355)
.|..+|+.|+.|...|.-++..+..++..+.++++.+..=|-
T Consensus 24 ~Lq~Ql~~Lq~Ev~~LRGqiE~~~~~l~ql~~rQrd~Y~dLD 65 (83)
T 2xdj_A 24 QLQQQLSDNQSDIDSLRGQIQENQYQLNQVVERQKQILLQID 65 (83)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 444555555555555555555555555555555555444443
No 42
>1jnm_A Proto-oncogene C-JUN; BZIP, protein-DNA complex, transcription/DNA complex; 2.20A {Homo sapiens} SCOP: h.1.3.1 PDB: 1fos_F 2h7h_A 1t2k_C 1a02_J* 1s9k_E 1jun_A
Probab=58.32 E-value=11 Score=27.72 Aligned_cols=32 Identities=6% Similarity=0.151 Sum_probs=25.6
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 018495 126 DEEIVMEIARLRQEQKSLDEELQGMNKRLEAT 157 (355)
Q Consensus 126 ~~~L~~EIerLKreq~~L~qEL~~Lrqr~q~~ 157 (355)
...|+.+++.|..++..|..++..|+..+..+
T Consensus 24 ~~~Le~~v~~L~~~n~~L~~~v~~L~~e~~~L 55 (62)
T 1jnm_A 24 IARLEEKVKTLKAQNSELASTANMLREQVAQL 55 (62)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTT
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34788888999999999998888888876543
No 43
>2akf_A Coronin-1A; coiled coil, protein binding; 1.20A {Synthetic}
Probab=58.24 E-value=11 Score=24.61 Aligned_cols=27 Identities=26% Similarity=0.479 Sum_probs=17.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhH
Q 018495 135 RLRQEQKSLDEELQGMNKRLEATERRP 161 (355)
Q Consensus 135 rLKreq~~L~qEL~~Lrqr~q~~Eqrq 161 (355)
+|.++...|..-+++|++|++.+|...
T Consensus 3 rlee~~r~l~~ivq~lq~r~drle~tv 29 (32)
T 2akf_A 3 RLEEDVRNLNAIVQKLQERLDRLEETV 29 (32)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 566666666666777777777666544
No 44
>3cve_A Homer protein homolog 1; coiled coil, alternative splicing, cell junction, cytoplasm, membrane, postsynaptic cell membrane, synapse; 1.75A {Rattus norvegicus}
Probab=56.45 E-value=36 Score=26.30 Aligned_cols=37 Identities=22% Similarity=0.430 Sum_probs=25.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHH
Q 018495 128 EIVMEIARLRQEQKSLDEELQGMNKRLEATERRPEQM 164 (355)
Q Consensus 128 ~L~~EIerLKreq~~L~qEL~~Lrqr~q~~EqrqqqM 164 (355)
.+...++.+..++..|...|..|+++++..+..+.++
T Consensus 4 ~~~~kLq~~E~~N~~Le~~v~~le~~Le~s~~~q~~~ 40 (72)
T 3cve_A 4 NSHMKLQEVEIRNKDLEGQLSEMEQRLEKSQSEQDAF 40 (72)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4556677777777777777777777776665544443
No 45
>3a2a_A Voltage-gated hydrogen channel 1; voltage-gated proton channel, alternative splicing, coiled C transport, ionic channel, membrane, transmembrane; 2.00A {Homo sapiens}
Probab=55.76 E-value=32 Score=25.52 Aligned_cols=34 Identities=21% Similarity=0.312 Sum_probs=25.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHH
Q 018495 131 MEIARLRQEQKSLDEELQGMNKRLEATERRPEQM 164 (355)
Q Consensus 131 ~EIerLKreq~~L~qEL~~Lrqr~q~~EqrqqqM 164 (355)
.++.+||+-+..|-..++.|+.+.-.+|+.+..+
T Consensus 11 ~q~~kLKq~n~~L~~kv~~Le~~c~e~eQEieRL 44 (58)
T 3a2a_A 11 RQLLRLKQMNVQLAAKIQHLEFSCSEKEQEIERL 44 (58)
T ss_dssp CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4678888888888888888877776666655443
No 46
>3c3g_A Alpha/beta peptide with the GCN4-PLI SIDE chain S AN (alpha-alpha-beta) backbone; helix bundle, foldamer, unknown function protein; HET: HMR B3Q B3D B3E B3L BIL B3K BAL GOL; 1.80A {Synthetic} PDB: 3heu_A* 3het_A* 3hev_A* 3hew_A* 3hey_A* 3hex_A* 3c3h_A*
Probab=55.30 E-value=23 Score=23.59 Aligned_cols=27 Identities=11% Similarity=0.207 Sum_probs=23.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 018495 128 EIVMEIARLRQEQKSLDEELQGMNKRL 154 (355)
Q Consensus 128 ~L~~EIerLKreq~~L~qEL~~Lrqr~ 154 (355)
.|+..++.|-.++..|..|+.+|+.-+
T Consensus 4 QLEdKvEeLl~~~~~Le~EV~RLk~lL 30 (33)
T 3c3g_A 4 XIEXKLXEIXSKXYHXENXLARIKXLL 30 (33)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhhHHHHHHHHHHHHH
Confidence 578899999999999999999888654
No 47
>1uo4_A General control protein GCN4; four helix bundle, cavity, iodobenzene; 1.70A {Saccharomyces cerevisiae} SCOP: h.1.3.1 PDB: 1uo3_A 1unt_A 1uo5_A 1unu_A 1unv_A 1uo1_A 2ccf_A 2cce_A 1unx_A 1unw_A 1w5j_A* 1w5k_A* 1u9f_A* 3f86_A* 3f87_A* 3hez_A* 3c3f_A*
Probab=55.28 E-value=19 Score=24.13 Aligned_cols=27 Identities=19% Similarity=0.213 Sum_probs=23.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 018495 128 EIVMEIARLRQEQKSLDEELQGMNKRL 154 (355)
Q Consensus 128 ~L~~EIerLKreq~~L~qEL~~Lrqr~ 154 (355)
.|+..++.|-.++..|..|+.+|+.-+
T Consensus 5 QLEdKVEeLl~~n~~Le~EV~RLk~LL 31 (34)
T 1uo4_A 5 QIEDKGEEILSKLYHIENELARIKKLL 31 (34)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHhhHHHHHHHHHHHHHH
Confidence 578899999999999999999888644
No 48
>1nkp_B MAX protein, MYC proto-oncogene protein; transcription, DNA, BHLHZ, heterodimer, transcription/DNA complex; 1.80A {Homo sapiens} SCOP: a.38.1.1 PDB: 1an2_A* 1r05_A 1nlw_B
Probab=54.60 E-value=13 Score=28.49 Aligned_cols=31 Identities=10% Similarity=0.292 Sum_probs=21.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhHH
Q 018495 132 EIARLRQEQKSLDEELQGMNKRLEATERRPE 162 (355)
Q Consensus 132 EIerLKreq~~L~qEL~~Lrqr~q~~Eqrqq 162 (355)
=|..|+++...|..|+..|++++..++++++
T Consensus 48 YI~~L~~~~~~l~~e~~~L~~~~~~L~~~l~ 78 (83)
T 1nkp_B 48 YIQYMRRKNHTHQQDIDDLKRQNALLEQQVR 78 (83)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3666777777777777777777766665543
No 49
>1dh3_A Transcription factor CREB; protein-DNA complex, transcription/DNA complex; HET: DNA; 3.00A {Mus musculus} SCOP: h.1.3.1
Probab=54.49 E-value=9.7 Score=27.64 Aligned_cols=27 Identities=26% Similarity=0.390 Sum_probs=20.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 018495 127 EEIVMEIARLRQEQKSLDEELQGMNKR 153 (355)
Q Consensus 127 ~~L~~EIerLKreq~~L~qEL~~Lrqr 153 (355)
..|+.++..|..++..|..++..|++.
T Consensus 25 ~~LE~~v~~L~~eN~~L~~~~~~L~~~ 51 (55)
T 1dh3_A 25 KSLENRVAVLENQNKTLIEELKALKDL 51 (55)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHTT
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 467778888888888888887777654
No 50
>3c3f_A Alpha/beta peptide with the GCN4-PLI SIDE chain S AN (alpha-alpha-alpha-beta) backbone...; helix bundle, foldamer, unknown function, de novo protein; HET: B3K B3D B3E BIL B3L BAL; 2.00A {Synthetic} SCOP: h.1.3.1
Probab=53.47 E-value=26 Score=23.51 Aligned_cols=27 Identities=15% Similarity=0.187 Sum_probs=23.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 018495 128 EIVMEIARLRQEQKSLDEELQGMNKRL 154 (355)
Q Consensus 128 ~L~~EIerLKreq~~L~qEL~~Lrqr~ 154 (355)
.|+..++.|-.++..|..|+.+|+.-+
T Consensus 5 QLEdKVEeLl~~~~~Le~EV~RLk~ll 31 (34)
T 3c3f_A 5 QIEXKLEXILSXLYHXENEXARIXKLL 31 (34)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHhhhhHHHHHHHHHHHHH
Confidence 578889999999999999999888654
No 51
>2w6b_A RHO guanine nucleotide exchange factor 7; X-RAY crystallography, phosphoprotein, guanine-nucleotide releasing factor, GIT, PAK, PIX, COOL; 2.80A {Rattus norvegicus}
Probab=52.07 E-value=51 Score=24.36 Aligned_cols=31 Identities=26% Similarity=0.408 Sum_probs=18.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 018495 128 EIVMEIARLRQEQKSLDEELQGMNKRLEATE 158 (355)
Q Consensus 128 ~L~~EIerLKreq~~L~qEL~~Lrqr~q~~E 158 (355)
.|..-+-.||.+.+.|.+|...|++-++.-+
T Consensus 7 SlVDtVYaLkDqV~eL~qe~k~m~k~lEeEq 37 (56)
T 2w6b_A 7 SLVDTVYALKDEVQELRQDNKKMKKSLEEEQ 37 (56)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4555566666666666666666666554433
No 52
>1nlw_A MAD protein, MAX dimerizer; transcription factor, DNA, BHLHZ, transcription/DNA complex; 2.00A {Homo sapiens} SCOP: a.38.1.1
Probab=51.79 E-value=18 Score=28.05 Aligned_cols=32 Identities=13% Similarity=0.315 Sum_probs=23.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHH
Q 018495 132 EIARLRQEQKSLDEELQGMNKRLEATERRPEQ 163 (355)
Q Consensus 132 EIerLKreq~~L~qEL~~Lrqr~q~~Eqrqqq 163 (355)
=|..|+.+...|..|+..|+.+++.+.+++++
T Consensus 48 yI~~L~~~~~~l~~e~~~L~~e~~~L~~~L~~ 79 (80)
T 1nlw_A 48 HIKKLEDSDRKAVHQIDQLQREQRHLKRQLEK 79 (80)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHC
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Confidence 37777777788888888888777776666554
No 53
>2bni_A General control protein GCN4; four helix bundle, antiparallel four helix bundle acyl transferase; HET: TYZ; 1.5A {Saccharomyces cerevisiae} SCOP: h.1.3.1 PDB: 2ccn_A 1w5k_A* 2ccf_A 2cce_A 1w5j_A* 1uo2_A 1gcl_A 1uo1_A 1unv_A 1uo0_A 1unt_A 1uo5_A 1unz_A 1unx_A 1unu_A 1unw_A 1uo4_A 1uo3_A 1uny_A 1u9f_A* ...
Probab=51.33 E-value=25 Score=23.64 Aligned_cols=27 Identities=19% Similarity=0.271 Sum_probs=23.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 018495 128 EIVMEIARLRQEQKSLDEELQGMNKRL 154 (355)
Q Consensus 128 ~L~~EIerLKreq~~L~qEL~~Lrqr~ 154 (355)
.|+..++.|-.++..|..|+.+|+.-+
T Consensus 5 QLEdKvEeLl~~~~~L~~EV~RLk~lL 31 (34)
T 2bni_A 5 QIEDKLEEILSKGHHICNELARIKKLL 31 (34)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHC
T ss_pred HHHHHHHHHHHccHHHHHHHHHHHHHh
Confidence 578899999999999999999988643
No 54
>2wt7_B Transcription factor MAFB; transcription, transcription regulation, nucleus, activator, repressor, DNA-binding, phosphoprotein, differentiation; 2.30A {Mus musculus} PDB: 2wty_A* 1k1v_A
Probab=51.21 E-value=15 Score=29.50 Aligned_cols=34 Identities=18% Similarity=0.279 Sum_probs=16.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 018495 127 EEIVMEIARLRQEQKSLDEELQGMNKRLEATERR 160 (355)
Q Consensus 127 ~~L~~EIerLKreq~~L~qEL~~Lrqr~q~~Eqr 160 (355)
..|+.++..|..+.+.|..|+..+.+..+...++
T Consensus 51 ~~LE~e~~~L~~e~~~L~~e~~~~~~e~d~~k~k 84 (90)
T 2wt7_B 51 HHLENEKTQLIQQVEQLKQEVSRLARERDAYKVK 84 (90)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3455555555555555555555554444444333
No 55
>1nkp_A C-MYC, MYC proto-oncogene protein; transcription, DNA, BHLHZ, heterodimer, transcription/DNA complex; 1.80A {Homo sapiens} SCOP: a.38.1.1
Probab=50.55 E-value=27 Score=27.40 Aligned_cols=34 Identities=26% Similarity=0.287 Sum_probs=24.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHH
Q 018495 131 MEIARLRQEQKSLDEELQGMNKRLEATERRPEQM 164 (355)
Q Consensus 131 ~EIerLKreq~~L~qEL~~Lrqr~q~~EqrqqqM 164 (355)
.=|..|+++...|..++..|+++.+.+.+++++|
T Consensus 52 ~YI~~L~~~~~~l~~~~~~L~~~n~~L~~rl~~L 85 (88)
T 1nkp_A 52 AYILSVQAEEQKLISEEDLLRKRREQLKHKLEQL 85 (88)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 3477777888888888887877777777666554
No 56
>2oxj_A Hybrid alpha/beta peptide based on the GCN4-P1 Se heptad positions B and F substituted...; helix bundle, foldamer, unknown function; HET: B3K B3D B3E B3S B3Y B3X B3A BAL; 2.00A {Synthetic} PDB: 2oxk_A*
Probab=50.04 E-value=31 Score=23.12 Aligned_cols=27 Identities=11% Similarity=0.265 Sum_probs=22.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 018495 128 EIVMEIARLRQEQKSLDEELQGMNKRL 154 (355)
Q Consensus 128 ~L~~EIerLKreq~~L~qEL~~Lrqr~ 154 (355)
.|+..++.|-.++..|..|+.+|+.-+
T Consensus 5 QLE~kVEeLl~~n~~Le~eV~rLk~ll 31 (34)
T 2oxj_A 5 QLEXKVXELLXKNXHLEXEVXRLKXLV 31 (34)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhhhhHHHHHHHHHHHH
Confidence 578889999999999999998887643
No 57
>2wq1_A General control protein GCN4; TAA, nucleus, coiled coil, DNA-binding, protein export, ION coordination, polar core residues; 1.08A {Saccharomyces cerevisiae} PDB: 2wq0_A 2wq2_A 2wq3_A 2wpz_A 2wpy_A 1ij0_A 1ij1_A 1gcm_A 1rb5_A 1rb6_A 1rb1_A 1rb4_A 1swi_A 3k7z_A 1zii_A 1zij_A 1ij2_A 1ij3_A 1zil_A 1zim_A ...
Probab=49.92 E-value=32 Score=22.93 Aligned_cols=26 Identities=12% Similarity=0.023 Sum_probs=22.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHH
Q 018495 128 EIVMEIARLRQEQKSLDEELQGMNKR 153 (355)
Q Consensus 128 ~L~~EIerLKreq~~L~qEL~~Lrqr 153 (355)
.|+..|+.|-.++..|..|+.+|+.-
T Consensus 4 QLEdKVEell~~~~~le~EV~Rl~~l 29 (33)
T 2wq1_A 4 QLEDKIEENTSKIYHNTNEIARNTKL 29 (33)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhhHHHHHHHHHHHHH
Confidence 57888999999999999999888764
No 58
>1fxk_C Protein (prefoldin); archaeal protein, chaperone; 2.30A {Methanothermobacter thermautotrophicusorganism_taxid} SCOP: a.2.5.1
Probab=49.43 E-value=38 Score=27.69 Aligned_cols=40 Identities=18% Similarity=0.309 Sum_probs=29.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHH
Q 018495 127 EEIVMEIARLRQEQKSLDEELQGMNKRLEATERRPEQMMA 166 (355)
Q Consensus 127 ~~L~~EIerLKreq~~L~qEL~~Lrqr~q~~EqrqqqMm~ 166 (355)
.-+...++.|+.....|..++..+++++..++..++++++
T Consensus 91 ~~l~~r~~~l~~~~~~l~~~l~~l~~~i~~~~~~l~~~~~ 130 (133)
T 1fxk_C 91 ESIKSQKNELESTLQKMGENLRAITDIMMKLSPQAEELLA 130 (133)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Confidence 3566777777777778888888888877777777776653
No 59
>2wt7_B Transcription factor MAFB; transcription, transcription regulation, nucleus, activator, repressor, DNA-binding, phosphoprotein, differentiation; 2.30A {Mus musculus} PDB: 2wty_A* 1k1v_A
Probab=49.09 E-value=30 Score=27.80 Aligned_cols=31 Identities=19% Similarity=0.370 Sum_probs=16.9
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 018495 126 DEEIVMEIARLRQEQKSLDEELQGMNKRLEA 156 (355)
Q Consensus 126 ~~~L~~EIerLKreq~~L~qEL~~Lrqr~q~ 156 (355)
...|..+++.|++++..+..|+..++++++.
T Consensus 57 ~~~L~~e~~~L~~e~~~~~~e~d~~k~k~~~ 87 (90)
T 2wt7_B 57 KTQLIQQVEQLKQEVSRLARERDAYKVKSEK 87 (90)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3455555555555555555555555555543
No 60
>3ra3_A P1C; coiled coil domain, fiber, KIH interactions, synthetic biolo helical reconstruction, de novo protein; HET: PHI; 2.31A {Synthetic}
Probab=48.41 E-value=11 Score=23.88 Aligned_cols=22 Identities=14% Similarity=0.457 Sum_probs=12.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHH
Q 018495 134 ARLRQEQKSLDEELQGMNKRLE 155 (355)
Q Consensus 134 erLKreq~~L~qEL~~Lrqr~q 155 (355)
+.|.-++.+|.+.+..|+|++-
T Consensus 3 dalefendaleqkiaalkqkia 24 (28)
T 3ra3_A 3 DALEFENDALEQKIAALKQKIA 24 (28)
T ss_dssp CHHHHHHHHHHHHHHHHHHHHH
T ss_pred chHHhccHHHHHHHHHHHHHHH
Confidence 3445556666666666666554
No 61
>3ra3_B P2F; coiled coil domain, fiber, KIH interactions, synthetic biolo helical reconstruction, de novo protein; HET: PHI; 2.31A {Synthetic}
Probab=48.33 E-value=19 Score=22.74 Aligned_cols=24 Identities=29% Similarity=0.463 Sum_probs=18.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHH
Q 018495 129 IVMEIARLRQEQKSLDEELQGMNK 152 (355)
Q Consensus 129 L~~EIerLKreq~~L~qEL~~Lrq 152 (355)
|.....+||++..+|.-|+..|.|
T Consensus 5 lkqknarlkqeiaaleyeiaaleq 28 (28)
T 3ra3_B 5 LKQKNARLKQEIAALEYEIAALEQ 28 (28)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHC-
T ss_pred HHHhhhHHHHHHHHHHHHHHHhcC
Confidence 556778899999999999887753
No 62
>2xu6_A MDV1 coiled coil; protein binding, mitochondrial outer membrane, adapter prote organelle division; 2.70A {Saccharomyces cerevisiae}
Probab=47.73 E-value=58 Score=25.22 Aligned_cols=60 Identities=12% Similarity=0.251 Sum_probs=50.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHhhcCCCcHHHHHhhhh
Q 018495 127 EEIVMEIARLRQEQKSLDEELQGMNKRLEATERRPEQMMAFLYKVVEDPDLLPRIIMEKE 186 (355)
Q Consensus 127 ~~L~~EIerLKreq~~L~qEL~~Lrqr~q~~EqrqqqMm~FLakvvqnP~fl~~li~q~e 186 (355)
..+..+++-|--.++.-..|+..+-.++..+....+-++.-||.+-++..+|.+-+..-+
T Consensus 3 ~~~~~~Leml~IrKnma~sEI~EID~Ki~nL~~mR~ivldRlA~lEqdE~~LE~~l~~i~ 62 (72)
T 2xu6_A 3 QTLVNSLEFLNIQKNSTMSEIRDIEVEVENLRQKKEKLLGKIANIEQNQLMLEDNLKQID 62 (72)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHH
Confidence 456677888888889999999999999999999999999999999998888876665544
No 63
>2hy6_A General control protein GCN4; protein design, parallel heptamer, protein structure, biosyn protein; 1.25A {Saccharomyces cerevisiae} SCOP: h.1.3.1 PDB: 2nrn_A 3crp_A 2b1f_A 3crp_B 2ipz_A 3ck4_A 3ck4_B 2b22_A 1ce9_A
Probab=47.68 E-value=36 Score=22.83 Aligned_cols=27 Identities=11% Similarity=0.239 Sum_probs=23.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 018495 128 EIVMEIARLRQEQKSLDEELQGMNKRL 154 (355)
Q Consensus 128 ~L~~EIerLKreq~~L~qEL~~Lrqr~ 154 (355)
.|+..++.|-.++..|..|+.+|+.-+
T Consensus 5 QLEdkVEeLl~~~~~Le~eV~RL~~ll 31 (34)
T 2hy6_A 5 QLADAVEELASANYHLANAVARLAKAV 31 (34)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhhHHHHHHHHHHHHHh
Confidence 578899999999999999999988654
No 64
>1bb1_B Designed, thermostable heterotrimeric coiled coil; de novo protein design; 1.80A {Synthetic construct} SCOP: k.7.1.1
Probab=47.52 E-value=38 Score=22.43 Aligned_cols=26 Identities=31% Similarity=0.634 Sum_probs=21.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHH
Q 018495 132 EIARLRQEQKSLDEELQGMNKRLEAT 157 (355)
Q Consensus 132 EIerLKreq~~L~qEL~~Lrqr~q~~ 157 (355)
.|..+|+++.++..|++.+++.+-..
T Consensus 3 kiaaikeeqaaieeeiqaikeeiaai 28 (36)
T 1bb1_B 3 KIAAIKEEQAAIEEEIQAIKEEIAAI 28 (36)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 56778899999999998888877553
No 65
>2w6b_A RHO guanine nucleotide exchange factor 7; X-RAY crystallography, phosphoprotein, guanine-nucleotide releasing factor, GIT, PAK, PIX, COOL; 2.80A {Rattus norvegicus}
Probab=47.26 E-value=68 Score=23.68 Aligned_cols=39 Identities=18% Similarity=0.268 Sum_probs=26.3
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHH
Q 018495 126 DEEIVMEIARLRQEQKSLDEELQGMNKRLEATERRPEQM 164 (355)
Q Consensus 126 ~~~L~~EIerLKreq~~L~qEL~~Lrqr~q~~EqrqqqM 164 (355)
-..|..++..|++|+..|.+-|.+=++--..+|..+.+|
T Consensus 12 VYaLkDqV~eL~qe~k~m~k~lEeEqkARk~LE~~vrk~ 50 (56)
T 2w6b_A 12 VYALKDEVQELRQDNKKMKKSLEEEQRARKDLEKLVRKV 50 (56)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 357889999999999988877765444334444444444
No 66
>3cue_D Transport protein particle 22 kDa subunit; membrane traffic, GEF, tethering complex, RAB activation, GU nucleotide exchange factor; HET: PLM; 3.70A {Saccharomyces cerevisiae}
Probab=47.16 E-value=13 Score=33.34 Aligned_cols=61 Identities=16% Similarity=0.346 Sum_probs=48.2
Q ss_pred hHHHH-HHHhhcCCCCCCcEEEcCCCCeEEE-eCCchhhhhh-ccccc-CCCChhHHHhh-----hcccCc
Q 018495 12 PFVMK-TYQMVNDPTTDSLISWGKANNSFIV-VDPLDFSQRI-LPAYF-KHNNFSSFVRQ-----LNTYGF 73 (355)
Q Consensus 12 ~Fl~K-Ly~mLed~~~~~iIsWs~~G~sFvV-~d~~~F~~~V-LP~yF-Kh~nfsSFvRQ-----LN~YGF 73 (355)
.|++| +|.|+=.-.- +...|+++++.|+| .|..-+..-| ||+.. ..-+|+.|+-- |.+-||
T Consensus 88 ~fI~k~~Wk~lfgk~~-d~L~~t~~~~~y~L~~d~nPl~~fv~lP~~~~~~l~y~~f~cGIIrGaL~~~g~ 157 (193)
T 3cue_D 88 EVLSKCAFKIFLNITP-NITNWSHNKDTFSLILDENPLADFVELPMDAMKSLWYSNILCGVLKGSLEMVQL 157 (193)
T ss_dssp HHHHHHHHHHHSSCCC-CCBCCCTTSCCCBCCBSCCGGGSSCCCCTTTTTSCCTTHHHHHHHHHHHHHTTC
T ss_pred HHHHHHHHHHHhCCCC-ccceecCCCCEEEEEECCchhhhheeCcHhHHhCcchhhhHHHHHHHHHHhCCC
Confidence 57744 8888876644 56889999999999 8888777665 78776 66789999865 788999
No 67
>3mud_A DNA repair protein XRCC4, tropomyosin alpha-1 CHA; tropomysoin, overlap complex, coiled-coils, contractIle PROT; HET: DNA; 2.20A {Homo sapiens} PDB: 3sr2_A*
Probab=46.99 E-value=37 Score=30.36 Aligned_cols=40 Identities=13% Similarity=0.095 Sum_probs=34.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHH
Q 018495 130 VMEIARLRQEQKSLDEELQGMNKRLEATERRPEQMMAFLY 169 (355)
Q Consensus 130 ~~EIerLKreq~~L~qEL~~Lrqr~q~~EqrqqqMm~FLa 169 (355)
+..+.+|++++..|+.+|...+.++..+.+.+.+.+..|.
T Consensus 134 ertV~kLqkeiD~LEDeL~~eKek~k~i~~eLDqTl~eL~ 173 (175)
T 3mud_A 134 LDTTAKNEKSIDDLEEKVAHAKEENLNMHQMLDQTLLELN 173 (175)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Confidence 4678899999999999999999999998888888877764
No 68
>1lwu_C Fibrinogen gamma chain; heterotrimer, protein-peptide complex, blood clotting; HET: NDG MAN NAG BMA GAL; 2.80A {Petromyzon marinus} SCOP: d.171.1.1 h.1.8.1 PDB: 1n73_C*
Probab=46.05 E-value=50 Score=31.92 Aligned_cols=43 Identities=19% Similarity=0.209 Sum_probs=27.0
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHH
Q 018495 126 DEEIVMEIARLRQEQKSLDEELQGMNKRLEATERRPEQMMAFL 168 (355)
Q Consensus 126 ~~~L~~EIerLKreq~~L~qEL~~Lrqr~q~~EqrqqqMm~FL 168 (355)
...|..|+.+|+........+|..|+.+++.++.+++++-.-|
T Consensus 7 ~~~~~~~~~~~e~~i~~~~~~i~~L~~~l~~~~~~i~~l~~~i 49 (323)
T 1lwu_C 7 VQKILEEVRILEQIGVSHDAQIQELSEMWRVNQQFVTRLQQQL 49 (323)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHhcHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3466777777776666666667777766666665555544433
No 69
>2w6a_A ARF GTPase-activating protein GIT1; PIX, zinc, signaling protein, CAT-1, cytoplasm, ANK repeat, coiled-coil, zinc-finger, metal-binding; 1.40A {Rattus norvegicus}
Probab=45.49 E-value=53 Score=24.67 Aligned_cols=31 Identities=16% Similarity=0.353 Sum_probs=23.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 018495 130 VMEIARLRQEQKSLDEELQGMNKRLEATERR 160 (355)
Q Consensus 130 ~~EIerLKreq~~L~qEL~~Lrqr~q~~Eqr 160 (355)
+..|.+|-+-++.|.+||..|++.++.++..
T Consensus 26 eAkiQQLmkVN~~ls~Elr~mQ~~lq~LQse 56 (63)
T 2w6a_A 26 EAKVQQLMKVNSSLSDELRKLQREIHKLQAE 56 (63)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHhHhhhHHHHHHHHHHHHHHhh
Confidence 5678888888888888888888887766544
No 70
>3cvf_A Homer-3, homer protein homolog 3; coiled coil, alternative splicing, cell junction, cytoplasm, membrane, phosphoprotein, polymorphism; 2.90A {Homo sapiens}
Probab=44.63 E-value=38 Score=26.55 Aligned_cols=38 Identities=24% Similarity=0.422 Sum_probs=21.5
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHH
Q 018495 126 DEEIVMEIARLRQEQKSLDEELQGMNKRLEATERRPEQ 163 (355)
Q Consensus 126 ~~~L~~EIerLKreq~~L~qEL~~Lrqr~q~~Eqrqqq 163 (355)
...+...++.+..++..|...|..|+++++..+..+.+
T Consensus 8 ~e~~~~klq~~E~rN~~Le~~v~~le~~Le~s~~~q~~ 45 (79)
T 3cvf_A 8 REETQQKVQDLETRNAELEHQLRAMERSLEEARAERER 45 (79)
T ss_dssp --CTTHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHH
Confidence 34445566666666666666666666666555444333
No 71
>3kqg_A Langerin, C-type lectin domain family 4 member K; trimer, NECK and CRD, coiled coil, immune system; 2.30A {Homo sapiens}
Probab=44.55 E-value=25 Score=29.44 Aligned_cols=30 Identities=13% Similarity=0.353 Sum_probs=9.7
Q ss_pred HHHHHHHHHHHHHHH---HHHHHHHHHHHHHHH
Q 018495 129 IVMEIARLRQEQKSL---DEELQGMNKRLEATE 158 (355)
Q Consensus 129 L~~EIerLKreq~~L---~qEL~~Lrqr~q~~E 158 (355)
|..+|+.||+++..+ ..+|..|+.+++.++
T Consensus 4 l~~~~~~l~~~~~~~~~l~~~~~~l~~~l~~~~ 36 (182)
T 3kqg_A 4 LNAQIPELKSDLEKASALNTKIRALQGSLENMS 36 (182)
T ss_dssp ---------CHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred hhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 445666666655533 444444444444333
No 72
>3iv1_A Tumor susceptibility gene 101 protein; coiled_COIL, tumorigenesis, CELL_cycle regulation, alternative splicing, cell cycle, cell division; HET: MSE; 2.50A {Homo sapiens}
Probab=44.45 E-value=37 Score=26.66 Aligned_cols=25 Identities=24% Similarity=0.335 Sum_probs=9.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH
Q 018495 130 VMEIARLRQEQKSLDEELQGMNKRL 154 (355)
Q Consensus 130 ~~EIerLKreq~~L~qEL~~Lrqr~ 154 (355)
+.-|.+|++++..|..++..|+.+.
T Consensus 45 ~~mi~~l~~E~~~l~~ni~~lk~K~ 69 (78)
T 3iv1_A 45 EEMVTRLDQEVAEVDKNIELLKKKD 69 (78)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3333333333333333333333333
No 73
>3m91_A Proteasome-associated ATPase; coil COIL alpha helix, ATP-binding, chaperone, nucleotide-BI proteasome, S-nitrosylation; 1.80A {Mycobacterium tuberculosis} PDB: 3m9h_A
Probab=43.84 E-value=71 Score=23.01 Aligned_cols=37 Identities=19% Similarity=0.279 Sum_probs=27.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHH
Q 018495 128 EIVMEIARLRQEQKSLDEELQGMNKRLEATERRPEQM 164 (355)
Q Consensus 128 ~L~~EIerLKreq~~L~qEL~~Lrqr~q~~EqrqqqM 164 (355)
++..++..|-..+..|..-|.+.++++..+...++++
T Consensus 13 ~l~~~l~~L~~rN~rL~~~L~~AR~el~~Lkeele~L 49 (51)
T 3m91_A 13 QLEARIDSLAARNSKLMETLKEARQQLLALREEVDRL 49 (51)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 6677788888888888888888888877766655543
No 74
>3bj4_A Potassium voltage-gated channel subfamily KQT member 1; coiled coil, alternative splicing, deafness, disease mutation, glycoprotein, ION transport; 2.00A {Homo sapiens}
Probab=42.70 E-value=37 Score=24.48 Aligned_cols=34 Identities=9% Similarity=0.293 Sum_probs=26.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHhh
Q 018495 139 EQKSLDEELQGMNKRLEATERRPEQMMAFLYKVV 172 (355)
Q Consensus 139 eq~~L~qEL~~Lrqr~q~~EqrqqqMm~FLakvv 172 (355)
+...+...|.++.+++..++++++.|+..+..++
T Consensus 11 ~~~S~~~Rl~rVE~qV~~md~KLd~l~~~~~~~l 44 (49)
T 3bj4_A 11 GSNTIGARLNRVEDKVTQLDQRLALITDMLHQLL 44 (49)
T ss_dssp -CCSHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred ccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3345777888899999999999998888887655
No 75
>2k48_A Nucleoprotein; viral protein; NMR {Andes virus}
Probab=42.70 E-value=50 Score=27.35 Aligned_cols=33 Identities=12% Similarity=0.271 Sum_probs=28.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 018495 127 EEIVMEIARLRQEQKSLDEELQGMNKRLEATER 159 (355)
Q Consensus 127 ~~L~~EIerLKreq~~L~qEL~~Lrqr~q~~Eq 159 (355)
.-+...|+.|+++....+.+|...+|+++..++
T Consensus 31 ~~tM~~ieeLQ~Ei~~~E~QL~iArQKLkdAe~ 63 (107)
T 2k48_A 31 PFTMSTLQELQENITAHEQQLVTARQKLKDAEK 63 (107)
T ss_dssp SHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred cccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 355689999999999999999999999987664
No 76
>2xv5_A Lamin-A/C; structural protein, intermediate filaments, nuclear membrane LEFT-handed coiled coil, right-handed coiled coil; HET: MSE; 2.40A {Homo sapiens}
Probab=42.38 E-value=69 Score=24.56 Aligned_cols=38 Identities=13% Similarity=0.171 Sum_probs=26.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHH
Q 018495 129 IVMEIARLRQEQKSLDEELQGMNKRLEATERRPEQMMA 166 (355)
Q Consensus 129 L~~EIerLKreq~~L~qEL~~Lrqr~q~~EqrqqqMm~ 166 (355)
+..|.+.++.....|..||..++..+..+-+..+.+|.
T Consensus 3 l~~e~~~~~~~i~~lE~eL~~~r~e~~~ql~EYq~Lln 40 (74)
T 2xv5_A 3 SARERDTSRRLLAEKEREMAEMRARMQQQLDEYQELLD 40 (74)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 45677777777788888888888777666555555554
No 77
>1gd2_E Transcription factor PAP1; basic leucine zipper, protein-DNA complex, transcription/DNA complex; HET: DNA; 2.00A {Schizosaccharomyces pombe} SCOP: h.1.3.1
Probab=42.10 E-value=34 Score=26.09 Aligned_cols=33 Identities=12% Similarity=0.233 Sum_probs=22.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 018495 128 EIVMEIARLRQEQKSLDEELQGMNKRLEATERR 160 (355)
Q Consensus 128 ~L~~EIerLKreq~~L~qEL~~Lrqr~q~~Eqr 160 (355)
.|+.+|..|......|..|...|+.++..+...
T Consensus 33 ~LE~~v~~le~~~~~l~~en~~Lr~~i~~L~~E 65 (70)
T 1gd2_E 33 ALETQVVTLKELHSSTTLENDQLRQKVRQLEEE 65 (70)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHTTHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 667777777777777777777777766655543
No 78
>3swy_A Cyclic nucleotide-gated cation channel alpha-3; coiled-coil, assembly domain, transport protein; 1.90A {Homo sapiens}
Probab=41.71 E-value=91 Score=22.07 Aligned_cols=41 Identities=15% Similarity=0.229 Sum_probs=28.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHH
Q 018495 128 EIVMEIARLRQEQKSLDEELQGMNKRLEATERRPEQMMAFL 168 (355)
Q Consensus 128 ~L~~EIerLKreq~~L~qEL~~Lrqr~q~~EqrqqqMm~FL 168 (355)
.+++.+++|......|...+.+|--.+...+++++|=+.-|
T Consensus 2 dlEekv~~Le~~ld~LqTr~ArLlae~~ssq~KlKqRit~l 42 (46)
T 3swy_A 2 ALEEKVEQLGSSLDTLQTRFARLLAEYNATQMKMKQRLSQL 42 (46)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred cHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 46677788888877777777777777776666665544444
No 79
>4etp_A Kinesin-like protein KAR3; kinesin motor protein, kinesin motor homology domain, karyog mitosis, microtubules; HET: ADP EBC; 2.30A {Saccharomyces cerevisiae}
Probab=41.51 E-value=59 Score=31.95 Aligned_cols=42 Identities=12% Similarity=0.136 Sum_probs=30.4
Q ss_pred ChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHH
Q 018495 125 DDEEIVMEIARLRQEQKSLDEELQGMNKRLEATERRPEQMMA 166 (355)
Q Consensus 125 ~~~~L~~EIerLKreq~~L~qEL~~Lrqr~q~~EqrqqqMm~ 166 (355)
+...++.+++.|+++...|.+++..++.+++.++++..+--.
T Consensus 4 ~~~~~~~~~~~l~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~ 45 (403)
T 4etp_A 4 KIAALKEKIAALKEKIAALKEKIKDTELGMKELNEILIKEET 45 (403)
T ss_dssp -CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 445777888888888888888888888877777665554443
No 80
>3v86_A De novo design helix; computational design of A protein crystal, helical coil, DE designed helix, de novo protein; 2.91A {Synthetic}
Probab=40.32 E-value=33 Score=21.47 Aligned_cols=23 Identities=22% Similarity=0.523 Sum_probs=13.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHH
Q 018495 128 EIVMEIARLRQEQKSLDEELQGM 150 (355)
Q Consensus 128 ~L~~EIerLKreq~~L~qEL~~L 150 (355)
.|..|+-.||-+..+|..|+.+|
T Consensus 4 qlkdevgelkgevralkdevkdl 26 (27)
T 3v86_A 4 QLKDEVGELKGEVRALKDEVKDL 26 (27)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHH
T ss_pred hhhHHHHHHHhHHHHHHHHHhcc
Confidence 34556666666666666666544
No 81
>3uux_B Mitochondrial division protein 1; tetratricopeptide repeat, mitochondrial fission, mitochondri cytoplasm, apoptosis; 3.90A {Saccharomyces cerevisiae S288C}
Probab=40.24 E-value=55 Score=30.67 Aligned_cols=60 Identities=13% Similarity=0.227 Sum_probs=52.3
Q ss_pred ChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHhhcCCCcHHHHHhh
Q 018495 125 DDEEIVMEIARLRQEQKSLDEELQGMNKRLEATERRPEQMMAFLYKVVEDPDLLPRIIME 184 (355)
Q Consensus 125 ~~~~L~~EIerLKreq~~L~qEL~~Lrqr~q~~EqrqqqMm~FLakvvqnP~fl~~li~q 184 (355)
....|..+++-|--++.....||.++-.+++.++.+.+.++.-|+.+-++..+|..-+..
T Consensus 157 ~~~~i~~~LelL~IRK~ma~sEI~EID~KI~~L~~mR~~vl~RLA~lEqdEl~LE~eL~~ 216 (242)
T 3uux_B 157 FSQTLVNSLEFLNIQKNSTLSEIRDIEVEVENLRQKKEKLLGKIANIEQNQLLLEDNLKQ 216 (242)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHH
Confidence 345778888999999999999999999999999999999999999999988888655543
No 82
>2zqm_A Prefoldin beta subunit 1; chaperone; HET: CIT; 1.90A {Thermococcus SP} PDB: 2zdi_A
Probab=40.07 E-value=1.1e+02 Score=23.97 Aligned_cols=42 Identities=12% Similarity=0.330 Sum_probs=20.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHhhc
Q 018495 132 EIARLRQEQKSLDEELQGMNKRLEATERRPEQMMAFLYKVVE 173 (355)
Q Consensus 132 EIerLKreq~~L~qEL~~Lrqr~q~~EqrqqqMm~FLakvvq 173 (355)
-+..|+.....+..++.+|.+++...+..++++-.-|..+++
T Consensus 71 a~~~L~~~~e~ie~~i~~le~~~~~l~~~l~~lk~~l~~~~~ 112 (117)
T 2zqm_A 71 AVAELKEKIETLEVRLNALERQEKKLNEKLKELTAQIQSALR 112 (117)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHS
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHc
Confidence 344444444555555555555555555555555555544443
No 83
>1wt6_A Myotonin-protein kinase; coiled-coil, kinase activation, DMPK, molecular replacement, transferase; 1.60A {Homo sapiens}
Probab=39.97 E-value=80 Score=24.95 Aligned_cols=34 Identities=15% Similarity=0.325 Sum_probs=19.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 018495 127 EEIVMEIARLRQEQKSLDEELQGMNKRLEATERR 160 (355)
Q Consensus 127 ~~L~~EIerLKreq~~L~qEL~~Lrqr~q~~Eqr 160 (355)
..+..|+.+.|.++..+..+|...+++.+.++..
T Consensus 27 Q~i~EELs~vr~~ni~~eskL~eae~rn~eL~~e 60 (81)
T 1wt6_A 27 QSLSREMEAIRTDNQNFASQLREAEARNRDLEAH 60 (81)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3455556666666666666666555555544433
No 84
>2wuj_A Septum site-determining protein diviva; bacterial cell division, septation, cell cycle, sporulation; 1.40A {Bacillus subtilis} PDB: 2wuk_A
Probab=38.43 E-value=25 Score=25.48 Aligned_cols=31 Identities=10% Similarity=0.220 Sum_probs=15.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 018495 128 EIVMEIARLRQEQKSLDEELQGMNKRLEATE 158 (355)
Q Consensus 128 ~L~~EIerLKreq~~L~qEL~~Lrqr~q~~E 158 (355)
+...=++++-.+...|..|...|++++..++
T Consensus 24 EVD~FLd~v~~~~~~l~~e~~~L~~~~~~l~ 54 (57)
T 2wuj_A 24 EVNEFLAQVRKDYEIVLRKKTELEAKVNELD 54 (57)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHC--
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3334444555555555555555555555444
No 85
>3swf_A CGMP-gated cation channel alpha-1; coiled-coil, assembly domain, transport protein; 2.14A {Bos taurus}
Probab=38.16 E-value=1.3e+02 Score=23.43 Aligned_cols=43 Identities=12% Similarity=0.203 Sum_probs=27.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHH
Q 018495 128 EIVMEIARLRQEQKSLDEELQGMNKRLEATERRPEQMMAFLYK 170 (355)
Q Consensus 128 ~L~~EIerLKreq~~L~qEL~~Lrqr~q~~EqrqqqMm~FLak 170 (355)
.++..|++|......|...+.+|--.+...+++++|=+.-|.+
T Consensus 4 dlEEKv~~LE~sld~LQTrfARLLaEy~ssQ~KLKqRit~LE~ 46 (74)
T 3swf_A 4 GLEEKVTRMESSVDLLQTRFARILAEYESMQQKLKQRLTKVEK 46 (74)
T ss_dssp CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4666777777777777777777766666666555554444444
No 86
>1nkp_B MAX protein, MYC proto-oncogene protein; transcription, DNA, BHLHZ, heterodimer, transcription/DNA complex; 1.80A {Homo sapiens} SCOP: a.38.1.1 PDB: 1an2_A* 1r05_A 1nlw_B
Probab=37.87 E-value=30 Score=26.39 Aligned_cols=29 Identities=10% Similarity=0.093 Sum_probs=17.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 018495 128 EIVMEIARLRQEQKSLDEELQGMNKRLEA 156 (355)
Q Consensus 128 ~L~~EIerLKreq~~L~qEL~~Lrqr~q~ 156 (355)
.|..+++.|+.+...|..|...|++++..
T Consensus 51 ~L~~~~~~l~~e~~~L~~~~~~L~~~l~~ 79 (83)
T 1nkp_B 51 YMRRKNHTHQQDIDDLKRQNALLEQQVRA 79 (83)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 44555666666666666666666665543
No 87
>3ljm_A Coil Ser L9C; de novo design, three stranded coiled coil, APO, de novo Pro; 1.36A {Synthetic} PDB: 2jgo_A 1cos_A 3h5g_A 3h5f_A 3pbj_A 2x6p_C 1coi_A
Probab=37.65 E-value=45 Score=21.45 Aligned_cols=27 Identities=33% Similarity=0.505 Sum_probs=20.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 018495 133 IARLRQEQKSLDEELQGMNKRLEATER 159 (355)
Q Consensus 133 IerLKreq~~L~qEL~~Lrqr~q~~Eq 159 (355)
-+.|.+...+|...|+.|.++++.+|.
T Consensus 3 wealekkcaalesklqalekklealeh 29 (31)
T 3ljm_A 3 WEALEKKCAALESKLQALEKKLEALEH 29 (31)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHc
Confidence 456777778888888888888877653
No 88
>4e61_A Protein BIM1; EB1-like motif, coiled-coil, spindle orientation, mitosis, K phosphorylation, mitotic spindle, microtubules, cell cycle; 2.45A {Saccharomyces cerevisiae}
Probab=37.57 E-value=1.2e+02 Score=25.10 Aligned_cols=34 Identities=21% Similarity=0.285 Sum_probs=24.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 018495 127 EEIVMEIARLRQEQKSLDEELQGMNKRLEATERR 160 (355)
Q Consensus 127 ~~L~~EIerLKreq~~L~qEL~~Lrqr~q~~Eqr 160 (355)
..+..|+...+.+...|.+++..|+..++.+|+.
T Consensus 7 ~al~~eL~~~~~ei~~L~~ei~eLk~~ve~lEkE 40 (106)
T 4e61_A 7 VAIQAELTKSQETIGSLNEEIEQYKGTVSTLEIE 40 (106)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4566777777777778888888877777776653
No 89
>2v66_B Nuclear distribution protein NUDE-like 1; structural protein, developmental protein, structural protei phosphorylation, transport, microtubule; 2.10A {Homo sapiens}
Probab=37.48 E-value=1.1e+02 Score=25.26 Aligned_cols=43 Identities=12% Similarity=0.183 Sum_probs=30.2
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHH
Q 018495 126 DEEIVMEIARLRQEQKSLDEELQGMNKRLEATERRPEQMMAFL 168 (355)
Q Consensus 126 ~~~L~~EIerLKreq~~L~qEL~~Lrqr~q~~EqrqqqMm~FL 168 (355)
...|..+|..|+..+..|...|..|.+..+..|+.-.-...-|
T Consensus 37 ~~~Lq~El~~lr~~~~~l~~~iReLEq~NDDLER~~R~t~~SL 79 (111)
T 2v66_B 37 VSVLEDDLSQTRAIKEQLHKYVRELEQANDDLERAKRATIVSL 79 (111)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhchHHHHHHHHHHhhH
Confidence 3467778888888888888888888887777776544333333
No 90
>3he4_A Synzip6; heterodimeric coiled-coil, de novo protein; 2.46A {Artificial gene}
Probab=36.94 E-value=76 Score=22.78 Aligned_cols=36 Identities=19% Similarity=0.470 Sum_probs=30.9
Q ss_pred ChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 018495 125 DDEEIVMEIARLRQEQKSLDEELQGMNKRLEATERR 160 (355)
Q Consensus 125 ~~~~L~~EIerLKreq~~L~qEL~~Lrqr~q~~Eqr 160 (355)
++..|+.-+.+|..++..|...+..|.+.+-.+|+.
T Consensus 18 enaklenivarlendnanlekdianlekdianlerd 53 (56)
T 3he4_A 18 ENAKLENIVARLENDNANLEKDIANLEKDIANLERD 53 (56)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred hcchHHHHHHHHhcccchHHHHHHHHHHHHHHHHHh
Confidence 567888899999999999999999999888777653
No 91
>4emc_A Monopolin complex subunit CSM1; RWD domain, kinetochore-binding, kinetoch replication-replication complex; 3.05A {Saccharomyces cerevisiae} PDB: 3n7n_A 3n4x_A
Probab=36.31 E-value=66 Score=29.13 Aligned_cols=46 Identities=11% Similarity=0.187 Sum_probs=30.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHhh
Q 018495 127 EEIVMEIARLRQEQKSLDEELQGMNKRLEATERRPEQMMAFLYKVV 172 (355)
Q Consensus 127 ~~L~~EIerLKreq~~L~qEL~~Lrqr~q~~EqrqqqMm~FLakvv 172 (355)
..|..|+..|.++.....+|+..|+++++.++......-.-+++..
T Consensus 23 ~~L~~En~~L~~ql~~k~~ei~~L~~ql~sl~~~~~~~~~~~~~~~ 68 (190)
T 4emc_A 23 ANLVNENFVLSEKLDTKATEIKQLQKQIDSLNAQVKELKTQTSQQA 68 (190)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhhHHHHHH
Confidence 4667777777777777777777777777776665544333344333
No 92
>2r2v_A GCN4 leucine zipper; coiled coils, anti-parallel tetramer, protein design, de novo protein; HET: CIT; 1.90A {Saccharomyces cerevisiae} SCOP: h.1.3.1
Probab=36.15 E-value=69 Score=21.46 Aligned_cols=27 Identities=15% Similarity=0.191 Sum_probs=22.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 018495 128 EIVMEIARLRQEQKSLDEELQGMNKRL 154 (355)
Q Consensus 128 ~L~~EIerLKreq~~L~qEL~~Lrqr~ 154 (355)
.++..++.|-.++..|..|+.++++-+
T Consensus 5 QledKvEel~~~~~~l~nEv~Rl~~lL 31 (34)
T 2r2v_A 5 QVADKLEEVASKLYHNANELARVAKLL 31 (34)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhHHHHHHHHHHHHHh
Confidence 577888889899999999998887643
No 93
>3m9b_A Proteasome-associated ATPase; coil COIL with 5 beta-strand barrel inter domain, chaperone; 3.94A {Mycobacterium tuberculosis} PDB: 3m9d_A
Probab=35.98 E-value=39 Score=31.80 Aligned_cols=34 Identities=21% Similarity=0.235 Sum_probs=20.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhH
Q 018495 128 EIVMEIARLRQEQKSLDEELQGMNKRLEATERRP 161 (355)
Q Consensus 128 ~L~~EIerLKreq~~L~qEL~~Lrqr~q~~Eqrq 161 (355)
.+..+++.|..++..|..+|.++++++..++..+
T Consensus 58 eL~~ql~~L~arNe~L~~~Lk~ar~El~~LkeEl 91 (251)
T 3m9b_A 58 QLEARIDSLAARNSKLMETLKEARQQLLALREEV 91 (251)
T ss_dssp HHHHHHHHHTTTHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 5556666666666666666666666665554443
No 94
>3a2a_A Voltage-gated hydrogen channel 1; voltage-gated proton channel, alternative splicing, coiled C transport, ionic channel, membrane, transmembrane; 2.00A {Homo sapiens}
Probab=35.42 E-value=75 Score=23.52 Aligned_cols=31 Identities=19% Similarity=0.334 Sum_probs=25.7
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 018495 126 DEEIVMEIARLRQEQKSLDEELQGMNKRLEA 156 (355)
Q Consensus 126 ~~~L~~EIerLKreq~~L~qEL~~Lrqr~q~ 156 (355)
+..|...|+.|+.......+|+.+|++-+++
T Consensus 20 n~~L~~kv~~Le~~c~e~eQEieRL~~LLkq 50 (58)
T 3a2a_A 20 NVQLAAKIQHLEFSCSEKEQEIERLNKLLRQ 50 (58)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4577888999999999999999998876643
No 95
>3t97_B Nuclear pore complex protein NUP54; nucleoporin, coiled-coil, nuclear pore complex, central TRAN channel, alpha helical proteins, triple helix; 2.80A {Rattus norvegicus}
Probab=35.39 E-value=1.2e+02 Score=22.99 Aligned_cols=36 Identities=19% Similarity=0.271 Sum_probs=26.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHH
Q 018495 128 EIVMEIARLRQEQKSLDEELQGMNKRLEATERRPEQ 163 (355)
Q Consensus 128 ~L~~EIerLKreq~~L~qEL~~Lrqr~q~~Eqrqqq 163 (355)
.+.++|..|++.+......+...++++.++..++=+
T Consensus 14 ~i~~el~eLq~~~~~~~aki~e~krkl~eLsHRiLk 49 (65)
T 3t97_B 14 IISEDISELQKNQTTTMAKIAQYKRKLMDLSHRTLQ 49 (65)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHH
Confidence 556788888888888888888887777666655433
No 96
>2zqm_A Prefoldin beta subunit 1; chaperone; HET: CIT; 1.90A {Thermococcus SP} PDB: 2zdi_A
Probab=34.99 E-value=1e+02 Score=24.20 Aligned_cols=38 Identities=16% Similarity=0.302 Sum_probs=20.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHH
Q 018495 128 EIVMEIARLRQEQKSLDEELQGMNKRLEATERRPEQMM 165 (355)
Q Consensus 128 ~L~~EIerLKreq~~L~qEL~~Lrqr~q~~EqrqqqMm 165 (355)
.|...++.|..+...|..++..+++++...+..+.+++
T Consensus 74 ~L~~~~e~ie~~i~~le~~~~~l~~~l~~lk~~l~~~~ 111 (117)
T 2zqm_A 74 ELKEKIETLEVRLNALERQEKKLNEKLKELTAQIQSAL 111 (117)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 44555555555555555555555555555555555443
No 97
>3t97_C Nuclear pore glycoprotein P62; nucleoporin, coiled-coil, nuclear pore complex, central TRAN channel, alpha helical proteins, triple helix; 2.80A {Rattus norvegicus}
Probab=34.92 E-value=69 Score=24.02 Aligned_cols=31 Identities=26% Similarity=0.396 Sum_probs=21.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 018495 128 EIVMEIARLRQEQKSLDEELQGMNKRLEATE 158 (355)
Q Consensus 128 ~L~~EIerLKreq~~L~qEL~~Lrqr~q~~E 158 (355)
.|..++.+.+++++.|.++|.-+..++..++
T Consensus 16 ~L~~~v~~~e~~Q~~ldq~Ld~Ie~QQ~ELe 46 (64)
T 3t97_C 16 SLHREVEKVKLDQKRLDQELDFILSQQKELE 46 (64)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHTHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 5667788888888888888766666655443
No 98
>3hnw_A Uncharacterized protein; coiled-coil, structural genomics, PSI-2, protein structure initiative, midwest center for structural genomics, MCSG; 2.20A {Eubacterium eligens}
Probab=34.79 E-value=1.3e+02 Score=25.49 Aligned_cols=32 Identities=16% Similarity=0.195 Sum_probs=13.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhH
Q 018495 130 VMEIARLRQEQKSLDEELQGMNKRLEATERRP 161 (355)
Q Consensus 130 ~~EIerLKreq~~L~qEL~~Lrqr~q~~Eqrq 161 (355)
..+++.|+++...+..|+..|+.++...+.+.
T Consensus 74 ~~~~~~L~~~l~~~~kE~~~lK~el~~~~~k~ 105 (138)
T 3hnw_A 74 KKMADSLSLDIENKDKEIYDLKHELIAAQIKA 105 (138)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33444444444444444444444443333333
No 99
>1go4_E MAD1 (mitotic arrest deficient)-like 1; mitotic spindle checkpoint, cell cycle, mitosis, nuclear Pro; 2.05A {Homo sapiens} SCOP: h.1.22.1
Probab=33.86 E-value=73 Score=26.01 Aligned_cols=31 Identities=23% Similarity=0.264 Sum_probs=18.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhHH
Q 018495 132 EIARLRQEQKSLDEELQGMNKRLEATERRPE 162 (355)
Q Consensus 132 EIerLKreq~~L~qEL~~Lrqr~q~~Eqrqq 162 (355)
++..|+++...|..|-.+|+++...+|-++.
T Consensus 13 ~~~~lr~ei~~Le~E~~rLr~~~~~LE~~Le 43 (100)
T 1go4_E 13 EADTLRLKVEELEGERSRLEEEKRMLEAQLE 43 (100)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 5666666666666666666666665554443
No 100
>1uii_A Geminin; human, DNA replication, cell cycle; 2.00A {Homo sapiens} SCOP: h.1.28.1
Probab=33.72 E-value=70 Score=25.40 Aligned_cols=28 Identities=21% Similarity=0.310 Sum_probs=15.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 018495 130 VMEIARLRQEQKSLDEELQGMNKRLEAT 157 (355)
Q Consensus 130 ~~EIerLKreq~~L~qEL~~Lrqr~q~~ 157 (355)
..|.+.|..+...|..|+..|++.++.+
T Consensus 45 L~EN~~Lh~~ie~l~eEi~~lk~en~eL 72 (83)
T 1uii_A 45 LKENEKLHKEIEQKDNEIARLKKENKEL 72 (83)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3455555555555555555555554443
No 101
>3duz_A GP67, major envelope glycoprotein; fusion protein, coiled-coil, fusion peptide, trimer, viral, lipoprotein; 2.95A {Autographa californica nuclearpolyhedrosis virus}
Probab=33.43 E-value=74 Score=32.18 Aligned_cols=105 Identities=19% Similarity=0.209 Sum_probs=63.3
Q ss_pred CChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHhhcCCCcHHHHHhhhhhccccCccccccccccc
Q 018495 124 LDDEEIVMEIARLRQEQKSLDEELQGMNKRLEATERRPEQMMAFLYKVVEDPDLLPRIIMEKESTTNRNNYYLGDKKRRL 203 (355)
Q Consensus 124 ~~~~~L~~EIerLKreq~~L~qEL~~Lrqr~q~~EqrqqqMm~FLakvvqnP~fl~~li~q~e~~~~~~~~~~~~KKRRl 203 (355)
+..+.+..-++.|.-+++.|...+..|..++..+-..+.+++.-++|+ |..++-+||-..-.++ -+..++.-|
T Consensus 277 As~~Dl~~I~~~lm~e~~~lr~Nl~~L~~~~n~l~~~l~~vI~SVaKI--DeRLIGrLmg~~vsS~-----fisdd~Fll 349 (487)
T 3duz_A 277 ATKGDLMHIQEELMYENDLLKMNIELMHAHINKLNNMLHDLIVSVAKV--DERLIGNLMNNSVSST-----FLSDDTFLL 349 (487)
T ss_dssp CCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTT--CTTHHHHHTTSCEEEE-----ESSSSCEEE
T ss_pred CCHHHHHHHHHHHHHhhhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHh--hHHHHHHHhCCcccce-----eecCCceEE
Confidence 567788888888888888888888888888877777777777777776 4677778776555433 233444444
Q ss_pred cCCCCcccccCCCCCCCCCCC--CCCCcccccccccceeeeecCCCCC
Q 018495 204 MISSSSQQQQQPSNSSSSGMA--ASSSIKSEEEEVGNIGVISSSSPDS 249 (355)
Q Consensus 204 ~~s~~~~~~~~P~~~~~~~~~--~~ssvk~e~~~~~~~~~~~~~~~~~ 249 (355)
.. + +++| .|++ ..-|+=. +||..+-.-+|+=+
T Consensus 350 ~P--C---~~~~-----~gtSNC~n~siY~----eGRw~~n~D~sqC~ 383 (487)
T 3duz_A 350 MP--C---TNPP-----AHTSNCYNNSIYK----EGRWVANTDSSQCI 383 (487)
T ss_dssp EE--C---CCCC-----CCCSSCSSCSSCS----TTTC-----CCSCC
T ss_pred cc--c---cCCC-----CCCccccCCcEEe----cceEEECCCccccc
Confidence 33 3 1122 1211 2333333 58877766666665
No 102
>2aze_B Transcription factor E2F1; coiled coil, beta sandwich, cell cycle, transcription; 2.55A {Homo sapiens} SCOP: e.63.1.2
Probab=33.16 E-value=67 Score=26.13 Aligned_cols=23 Identities=22% Similarity=0.385 Sum_probs=9.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHH
Q 018495 132 EIARLRQEQKSLDEELQGMNKRL 154 (355)
Q Consensus 132 EIerLKreq~~L~qEL~~Lrqr~ 154 (355)
++..||.+...|..+=..|-+++
T Consensus 7 ~~~~Lk~El~~L~~~E~~LD~~i 29 (106)
T 2aze_B 7 RLEGLTQDLRQLQESEQQLDHLM 29 (106)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHH
Confidence 34444444444444333333333
No 103
>1ic2_A Tropomyosin alpha chain, skeletal muscle; alpha-helical coiled coil, alanine, symmetry, axial stagger, BEND, contractIle protein; 2.00A {Gallus gallus} SCOP: h.1.5.1
Probab=32.95 E-value=1.1e+02 Score=23.32 Aligned_cols=42 Identities=21% Similarity=0.306 Sum_probs=22.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHH
Q 018495 129 IVMEIARLRQEQKSLDEELQGMNKRLEATERRPEQMMAFLYK 170 (355)
Q Consensus 129 L~~EIerLKreq~~L~qEL~~Lrqr~q~~EqrqqqMm~FLak 170 (355)
+..++.........+..||..|+++++.+|....+.-.-|..
T Consensus 25 ~e~~l~~~e~~~~~~E~ev~~L~kKiq~lE~eld~~ee~l~~ 66 (81)
T 1ic2_A 25 AEADKKAAEERSKQLEDELVALQKKLKGTEDELDKYSESLKD 66 (81)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 334444444455555666666666666665555554444443
No 104
>2wvr_A Geminin; DNA replication license, DNA replication inhibitor, phosphoprotein, UBL conjugation, DNA-binding, polymorphism; HET: DNA; 3.30A {Homo sapiens}
Probab=32.84 E-value=1e+02 Score=28.26 Aligned_cols=45 Identities=18% Similarity=0.268 Sum_probs=26.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---hHHHHHHHHHHhh
Q 018495 128 EIVMEIARLRQEQKSLDEELQGMNKRLEATER---RPEQMMAFLYKVV 172 (355)
Q Consensus 128 ~L~~EIerLKreq~~L~qEL~~Lrqr~q~~Eq---rqqqMm~FLakvv 172 (355)
.-..|.+.|..+...|..|+..|++.++.+.. ..+.|..-|.+++
T Consensus 112 eaLeEN~~Lh~~ie~l~eEi~~LkeEn~eLkeLae~~q~la~vi~~l~ 159 (209)
T 2wvr_A 112 EALKENEKLHKEIEQKDNEIARLKKENKELAEVAEHVQYMAELIERLN 159 (209)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 33466777777777777777777766555443 2333444444444
No 105
>3u1c_A Tropomyosin alpha-1 chain; anti-parallel coiled coil, contractIle protein; 1.80A {Gallus gallus} PDB: 3u1a_A
Probab=32.81 E-value=1.6e+02 Score=23.33 Aligned_cols=44 Identities=20% Similarity=0.325 Sum_probs=29.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHh
Q 018495 128 EIVMEIARLRQEQKSLDEELQGMNKRLEATERRPEQMMAFLYKV 171 (355)
Q Consensus 128 ~L~~EIerLKreq~~L~qEL~~Lrqr~q~~EqrqqqMm~FLakv 171 (355)
.++.++..+......+..||..|+++++.+|.-+.+.-.-|..+
T Consensus 27 ~~e~~~k~~e~~~~~~E~Ei~sL~kk~~~lE~eld~~ee~L~ea 70 (101)
T 3u1c_A 27 QAEADKKAAEERSKQLEDDIVQLEKQLRVTEDSRDQVLEELHKS 70 (101)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 44555666666667777777777777777776666655555544
No 106
>1hjb_A Ccaat/enhancer binding protein beta; transcription/DNA, protein-DNA complex; HET: DNA; 3.0A {Homo sapiens} SCOP: h.1.3.1
Probab=32.41 E-value=53 Score=26.05 Aligned_cols=36 Identities=14% Similarity=0.207 Sum_probs=18.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHH
Q 018495 133 IARLRQEQKSLDEELQGMNKRLEATERRPEQMMAFL 168 (355)
Q Consensus 133 IerLKreq~~L~qEL~~Lrqr~q~~EqrqqqMm~FL 168 (355)
...+......|.+|=..|+.+++.++..++.|-.+|
T Consensus 38 ~~e~~~r~~~Le~EN~~Lr~~v~~L~~E~~~Lr~ll 73 (87)
T 1hjb_A 38 NLETQHKVLELTAENERLQKKVEQLSRELSTLRNLF 73 (87)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 333444445555555556666655554444444333
No 107
>3he5_B Synzip2; heterodimeric coiled-coil, de novo protein; 1.75A {Artificial gene}
Probab=32.25 E-value=1.3e+02 Score=21.22 Aligned_cols=27 Identities=26% Similarity=0.469 Sum_probs=17.1
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 018495 126 DEEIVMEIARLRQEQKSLDEELQGMNK 152 (355)
Q Consensus 126 ~~~L~~EIerLKreq~~L~qEL~~Lrq 152 (355)
+.-|...|.+||+++-.|...-+.|.+
T Consensus 5 naylrkkiarlkkdnlqlerdeqnlek 31 (52)
T 3he5_B 5 NAYLRKKIARLKKDNLQLERDEQNLEK 31 (52)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred hHHHHHHHHHHhhhhhhhhhhHhhHHH
Confidence 445667788888887766655444433
No 108
>1ci6_A Transcription factor ATF-4; BZIP; 2.60A {Homo sapiens} SCOP: h.1.3.1
Probab=32.23 E-value=1.5e+02 Score=21.74 Aligned_cols=37 Identities=16% Similarity=0.241 Sum_probs=24.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHH
Q 018495 130 VMEIARLRQEQKSLDEELQGMNKRLEATERRPEQMMA 166 (355)
Q Consensus 130 ~~EIerLKreq~~L~qEL~~Lrqr~q~~EqrqqqMm~ 166 (355)
..+++.|..+...|..+-..|+.++..++...+.+-.
T Consensus 22 k~~~~~le~~~~~L~~~N~~L~~~i~~L~~E~~~Lk~ 58 (63)
T 1ci6_A 22 RAEQEALTGECKELEKKNEALKERADSLAKEIQYLKD 58 (63)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4566677777777777777777777666665544433
No 109
>1g6u_A Domain swapped dimer; designed three helix bundle, de novo protein; 1.48A {Synthetic} SCOP: k.9.1.1
Probab=31.87 E-value=81 Score=22.03 Aligned_cols=24 Identities=29% Similarity=0.596 Sum_probs=10.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHH
Q 018495 132 EIARLRQEQKSLDEELQGMNKRLE 155 (355)
Q Consensus 132 EIerLKreq~~L~qEL~~Lrqr~q 155 (355)
|+..|..+.++|...|..|+.+++
T Consensus 21 elaaleselqalekklaalksklq 44 (48)
T 1g6u_A 21 ELAALESELQALEKKLAALKSKLQ 44 (48)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHH
Confidence 334444444444444444444443
No 110
>3ghg_A Fibrinogen alpha chain; triple-stranded coiled coil, beta sheets, alpha helices, AMY amyloidosis, blood coagulation, disease mutation, glycoprot phosphoprotein; HET: NAG NDG BMA MAN GAL SIA; 2.90A {Homo sapiens} PDB: 3h32_A* 2a45_G*
Probab=31.57 E-value=75 Score=33.02 Aligned_cols=14 Identities=14% Similarity=0.200 Sum_probs=7.3
Q ss_pred HhHHHHHHHHHHhh
Q 018495 159 RRPEQMMAFLYKVV 172 (355)
Q Consensus 159 qrqqqMm~FLakvv 172 (355)
..|+||.+-.++-+
T Consensus 180 ~~QKQLeQv~a~dL 193 (562)
T 3ghg_A 180 DQQKQLEQVIAKDL 193 (562)
T ss_dssp HHHHHHHHHHTTCC
T ss_pred HHHHHHHHHhhccc
Confidence 34555555555544
No 111
>2wt7_A Proto-oncogene protein C-FOS; transcription, transcription regulation, nucleus, activator, repressor, DNA-binding, phosphoprotein, differentiation; 2.30A {Mus musculus} PDB: 1fos_E* 1a02_F* 1s9k_D
Probab=31.27 E-value=1.5e+02 Score=21.53 Aligned_cols=38 Identities=16% Similarity=0.254 Sum_probs=22.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHH
Q 018495 131 MEIARLRQEQKSLDEELQGMNKRLEATERRPEQMMAFL 168 (355)
Q Consensus 131 ~EIerLKreq~~L~qEL~~Lrqr~q~~EqrqqqMm~FL 168 (355)
..++.|..+...|..+-..|+.++..++....+|-..|
T Consensus 23 ~~~~~Le~~v~~L~~~n~~L~~ei~~L~~e~~~Lk~~l 60 (63)
T 2wt7_A 23 ELTDTLQAETDQLEDEKSALQTEIANLLKEKEKLEFIL 60 (63)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 44566666666666666666666666555555554444
No 112
>2zdi_C Prefoldin subunit alpha; chaperone, cytoplasm; 3.00A {Pyrococcus horikoshii}
Probab=31.19 E-value=97 Score=25.95 Aligned_cols=38 Identities=13% Similarity=0.253 Sum_probs=23.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHH
Q 018495 128 EIVMEIARLRQEQKSLDEELQGMNKRLEATERRPEQMM 165 (355)
Q Consensus 128 ~L~~EIerLKreq~~L~qEL~~Lrqr~q~~EqrqqqMm 165 (355)
.+...++.|+.....|...+..++.++..++..+++++
T Consensus 102 ~l~~ri~~l~~~l~~l~~~l~~l~~~i~~~~~~l~~l~ 139 (151)
T 2zdi_C 102 FLEKRLKEYDEAIKKTQGALAELEKRIGEVARKAQEVQ 139 (151)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHTHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 45556666666666666666666666666555555544
No 113
>1joc_A EEA1, early endosomal autoantigen 1; FYVE domain, inositol 3-phosphate binding, membrane protein; HET: ITP; 2.20A {Homo sapiens} SCOP: g.50.1.1 h.1.21.1 PDB: 1hyi_A* 1hyj_A
Probab=31.05 E-value=99 Score=25.48 Aligned_cols=37 Identities=11% Similarity=0.212 Sum_probs=22.8
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHH
Q 018495 126 DEEIVMEIARLRQEQKSLDEELQGMNKRLEATERRPE 162 (355)
Q Consensus 126 ~~~L~~EIerLKreq~~L~qEL~~Lrqr~q~~Eqrqq 162 (355)
...+.+..-..+.|...|..++..|+++++.++..++
T Consensus 6 ~~~~~~~~~~~e~e~~~l~~~~~el~~~l~~~~~~~~ 42 (125)
T 1joc_A 6 RRALLERCLKGEGEIEKLQTKVLELQRKLDNTTAAVQ 42 (125)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4455555555666666777777777777766554443
No 114
>1zym_A Enzyme I; phosphotransferase; 2.50A {Escherichia coli} SCOP: a.60.10.1 c.8.1.2 PDB: 1eza_A 1ezb_A 1ezc_A 1ezd_A 2eza_A 2ezb_A 2ezc_A 3ezb_A 3eze_A 3eza_A
Probab=31.00 E-value=99 Score=28.55 Aligned_cols=59 Identities=17% Similarity=0.246 Sum_probs=42.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHhHHHHHHHHHHhhcCCCcHHHHHhhh
Q 018495 127 EEIVMEIARLRQEQKSLDEELQGMNKRLEAT-ERRPEQMMAFLYKVVEDPDLLPRIIMEK 185 (355)
Q Consensus 127 ~~L~~EIerLKreq~~L~qEL~~Lrqr~q~~-EqrqqqMm~FLakvvqnP~fl~~li~q~ 185 (355)
...+.|+++|+.-......||..|+++.... ......|+.--.-+++||.|+..+....
T Consensus 34 ~~~~~E~~rl~~Al~~~~~eL~~l~~~~~~~~g~e~a~If~ah~~~L~D~~l~~~v~~~I 93 (258)
T 1zym_A 34 DQVDQEVERFLSGRAKASAQLETIKTKAGETFGEEKEAIFEGHIMLLEDEELEQEIIALI 93 (258)
T ss_dssp TTHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCHHHHHHHHHHHHHHTCHHHHHHHHHHH
T ss_pred cCHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcChhHHHHHHHHHHHhcCHHHHHHHHHHH
Confidence 3477899999999999999999988876432 2233446666677788888876654433
No 115
>3oja_B Anopheles plasmodium-responsive leucine-rich REPE 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae}
Probab=30.94 E-value=1.1e+02 Score=30.45 Aligned_cols=25 Identities=16% Similarity=0.133 Sum_probs=11.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH
Q 018495 127 EEIVMEIARLRQEQKSLDEELQGMN 151 (355)
Q Consensus 127 ~~L~~EIerLKreq~~L~qEL~~Lr 151 (355)
..+..+++.++++.+.+..++.+++
T Consensus 505 ~~l~~~~~~~~~~~~~~~~~~~~~~ 529 (597)
T 3oja_B 505 DNLNKVFTHLKERQAFKLRETQARR 529 (597)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhhhhhhHHHHHHHH
Confidence 4444555555554444444444433
No 116
>2zxx_A Geminin; coiled-coil, cell cycle, coiled coil, DNA replication inhibitor, phosphoprotein, DNA-binding, nucleus, proto-oncogene; HET: DNA; 2.80A {Mus musculus}
Probab=30.80 E-value=62 Score=25.42 Aligned_cols=24 Identities=25% Similarity=0.387 Sum_probs=13.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHH
Q 018495 130 VMEIARLRQEQKSLDEELQGMNKR 153 (355)
Q Consensus 130 ~~EIerLKreq~~L~qEL~~Lrqr 153 (355)
..|..+|..+...+..||..|++.
T Consensus 33 L~EN~~Lh~~ie~~~eEi~~LkeE 56 (79)
T 2zxx_A 33 LKENEKLHKEIEQKDSEIARLRKE 56 (79)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHH
Confidence 345555555555566666666554
No 117
>2xdj_A Uncharacterized protein YBGF; unknown function; 1.82A {Escherichia coli} PDB: 2wz7_A
Probab=30.38 E-value=1e+02 Score=24.15 Aligned_cols=39 Identities=8% Similarity=0.256 Sum_probs=25.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHhh
Q 018495 134 ARLRQEQKSLDEELQGMNKRLEATERRPEQMMAFLYKVV 172 (355)
Q Consensus 134 erLKreq~~L~qEL~~Lrqr~q~~EqrqqqMm~FLakvv 172 (355)
-.|......|..||.+||-+++.+...+++|..-....+
T Consensus 23 ~~Lq~Ql~~Lq~Ev~~LRGqiE~~~~~l~ql~~rQrd~Y 61 (83)
T 2xdj_A 23 TQLQQQLSDNQSDIDSLRGQIQENQYQLNQVVERQKQIL 61 (83)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHH
Confidence 445556667777777777777777777777666555544
No 118
>1use_A VAsp, vasodilator-stimulated phosphoprotein; signaling protein, null; 1.3A {Homo sapiens} SCOP: h.1.29.1 PDB: 1usd_A
Probab=29.72 E-value=71 Score=22.66 Aligned_cols=24 Identities=25% Similarity=0.538 Sum_probs=14.2
Q ss_pred HHHHHHHHHH-HHHHHHHHHHHHHH
Q 018495 131 MEIARLRQEQ-KSLDEELQGMNKRL 154 (355)
Q Consensus 131 ~EIerLKreq-~~L~qEL~~Lrqr~ 154 (355)
.+++++|+|. ..+..||+++++.+
T Consensus 7 ~dle~~KqEIL~E~RkElqK~K~EI 31 (45)
T 1use_A 7 SDLQRVKQELLEEVKKELQKVKEEI 31 (45)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3566666664 45666666666554
No 119
>3u06_A Protein claret segregational; motor domain, stalk rotation, power stroke, kinesin-14, MICR binding, NCD, transport, molecular motor; HET: ADP GOL; 2.35A {Drosophila melanogaster} PDB: 2ncd_A* 1n6m_A* 1cz7_A* 3l1c_A*
Probab=29.57 E-value=1.3e+02 Score=29.68 Aligned_cols=39 Identities=21% Similarity=0.175 Sum_probs=30.0
Q ss_pred ChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHH
Q 018495 125 DDEEIVMEIARLRQEQKSLDEELQGMNKRLEATERRPEQ 163 (355)
Q Consensus 125 ~~~~L~~EIerLKreq~~L~qEL~~Lrqr~q~~Eqrqqq 163 (355)
+...|+.|++.|++....|.+++..++.+++.+++++.+
T Consensus 4 ~~~~l~~el~~~~~~~~~l~~~~~~~~~~~~~~~~~l~~ 42 (412)
T 3u06_A 4 MHAALSTEVVHLRQRTEELLRCNEQQAAELETCKEQLFQ 42 (412)
T ss_dssp CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 456788888888888888888888888777776655544
No 120
>3hnw_A Uncharacterized protein; coiled-coil, structural genomics, PSI-2, protein structure initiative, midwest center for structural genomics, MCSG; 2.20A {Eubacterium eligens}
Probab=29.48 E-value=1.8e+02 Score=24.60 Aligned_cols=31 Identities=19% Similarity=0.328 Sum_probs=14.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 018495 127 EEIVMEIARLRQEQKSLDEELQGMNKRLEAT 157 (355)
Q Consensus 127 ~~L~~EIerLKreq~~L~qEL~~Lrqr~q~~ 157 (355)
..|..+++.+.++...|..||..++-+++..
T Consensus 78 ~~L~~~l~~~~kE~~~lK~el~~~~~k~e~~ 108 (138)
T 3hnw_A 78 DSLSLDIENKDKEIYDLKHELIAAQIKAESS 108 (138)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3455555555555555555554444444333
No 121
>3a7p_A Autophagy protein 16; coiled-coil, coiled coil, cytoplasmic vesicle, protein transport, transport, vacuole; 2.80A {Saccharomyces cerevisiae}
Probab=29.26 E-value=87 Score=27.40 Aligned_cols=59 Identities=17% Similarity=0.284 Sum_probs=31.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHH--------------HHHHhHHHHHHHHHHhhc-CCCcHHHHHhhhhh
Q 018495 129 IVMEIARLRQEQKSLDEELQGMNKRLE--------------ATERRPEQMMAFLYKVVE-DPDLLPRIIMEKES 187 (355)
Q Consensus 129 L~~EIerLKreq~~L~qEL~~Lrqr~q--------------~~EqrqqqMm~FLakvvq-nP~fl~~li~q~e~ 187 (355)
....|..|+.+...|..++..+...++ .++-....+-.-+.++-. |..++.|+|.++.+
T Consensus 66 ~~~~I~~L~~El~~l~~ki~dLeeel~eK~K~~e~l~DEl~aLqlq~n~lE~kl~kLq~EN~~LV~RWM~rk~q 139 (152)
T 3a7p_A 66 LLNTLAILQKELKSKEQEIRRLKEVIALKNKNTERLNAALISGTIENNVLQQKLSDLKKEHSQLVARWLKKTEK 139 (152)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 344566666666666666555543322 222223333344444444 56677888877654
No 122
>3w03_C DNA repair protein XRCC4; coiled-coil, NHEJ, DSBS repair, KU70/80, DNA-PKCS, DNA ligas binding protein; HET: DNA; 8.49A {Homo sapiens}
Probab=29.08 E-value=67 Score=28.82 Aligned_cols=22 Identities=27% Similarity=0.836 Sum_probs=12.2
Q ss_pred hcCCCCCCc--EEEcCC-CCeEEEe
Q 018495 21 VNDPTTDSL--ISWGKA-NNSFIVV 42 (355)
Q Consensus 21 Led~~~~~i--IsWs~~-G~sFvV~ 42 (355)
+.+|...-. ++|-.+ |.+|.|.
T Consensus 31 ~s~p~~~yflk~~W~~~l~sgF~L~ 55 (184)
T 3w03_C 31 VSEPSITHFLQVSWEKTLESGFVIT 55 (184)
T ss_dssp TTCTTSCEEEEEEESSCGGGEEEEE
T ss_pred cCCCCceEEEEEEeccCCCCceEEE
Confidence 445544322 689776 5666653
No 123
>2z5i_A TM, general control protein GCN4 and tropomyosin alpha-1 chain; coiled coil, actin, troponin, cytoskeleton, cardiomyopathy; 2.10A {Saccharomyces cerevisiae} PDB: 2z5h_A 1kql_A 1mv4_A 2g9j_C
Probab=28.90 E-value=65 Score=23.09 Aligned_cols=37 Identities=22% Similarity=0.346 Sum_probs=27.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHH
Q 018495 130 VMEIARLRQEQKSLDEELQGMNKRLEATERRPEQMMA 166 (355)
Q Consensus 130 ~~EIerLKreq~~L~qEL~~Lrqr~q~~EqrqqqMm~ 166 (355)
+..|.+|+++...|..+|..-+.+...+.+.+.+.+.
T Consensus 11 ERsV~KLek~ID~LEdeL~~eKek~~~i~~eLD~tl~ 47 (52)
T 2z5i_A 11 ENEVARLKKLVDDLEDELYAQKLKYKAISEELDHALN 47 (52)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTT
T ss_pred HHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHH
Confidence 4567888888888888888777777777666666543
No 124
>1sz7_A BET3 homolog, trafficking protein particle complex subunit 3; alpha-beta plait, trapp complex, palmitoylated, transport PR; HET: PLM; 1.55A {Homo sapiens} PDB: 2cfh_A* 2pwn_A* 3kxc_A* 1wc8_A* 2j3w_D* 2j3r_A* 2j3t_A* 1wc9_A* 2c0j_A*
Probab=28.10 E-value=43 Score=30.30 Aligned_cols=62 Identities=18% Similarity=0.333 Sum_probs=47.1
Q ss_pred hHHHH-HHHhhcCCCCCCcEEEcCCCCeEEE-eCCchhhhhh-cccccCCCChhHHHhh-----hcccCcc
Q 018495 12 PFVMK-TYQMVNDPTTDSLISWGKANNSFIV-VDPLDFSQRI-LPAYFKHNNFSSFVRQ-----LNTYGFR 74 (355)
Q Consensus 12 ~Fl~K-Ly~mLed~~~~~iIsWs~~G~sFvV-~d~~~F~~~V-LP~yFKh~nfsSFvRQ-----LN~YGFr 74 (355)
.|+.| +|.|+=.-.- +...|+++++.|+| .|..-+..-| ||+-.+.-+|+.|+-- |.+-||.
T Consensus 85 ~fI~k~~Wk~lFgk~a-d~L~~t~~~~~Y~L~~D~nPL~~fvslP~~~~~l~y~~f~cGIIrGaL~~lg~~ 154 (200)
T 1sz7_A 85 DVIAKVAFKMYLGITP-SITNWSPAGDEFSLILENNPLVDFVELPDNHSSLIYSNLLCGVLRGALEMVQMA 154 (200)
T ss_dssp HHHHHTHHHHHHSCCC-EEECCCTTSCEEEEEESSCTTCTTCCCCGGGTTCCTTTHHHHHHHHHHHTTTEE
T ss_pred HHHHHHHHHHHhCCCC-ccceecCCCCEEEEEECCcHHHHhccCCccccCCchhhhHHHHHHHHHHhCCCE
Confidence 56644 7777765433 57899999999999 7887766644 7876677789999855 7888998
No 125
>1m1j_C Fibrinogen gamma chain; coiled coils, disulfide rings, fibrinogen, blood clotting; HET: NDG NAG; 2.70A {Gallus gallus} SCOP: d.171.1.1 h.1.8.1 PDB: 1ei3_C
Probab=27.87 E-value=1.3e+02 Score=30.03 Aligned_cols=45 Identities=13% Similarity=0.168 Sum_probs=28.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHhh
Q 018495 128 EIVMEIARLRQEQKSLDEELQGMNKRLEATERRPEQMMAFLYKVV 172 (355)
Q Consensus 128 ~L~~EIerLKreq~~L~qEL~~Lrqr~q~~EqrqqqMm~FLakvv 172 (355)
.|.+++.+|+........+|..|+.++..++.++++|-.-|..+.
T Consensus 88 kml~~~~~~e~~~~~~~~~i~~l~~~~~~~~~~i~~l~~~i~~l~ 132 (409)
T 1m1j_C 88 KIIEEIIRYENTILAHENTIQQLTDMHIMNSNKITQLKQKIAQLE 132 (409)
T ss_dssp HHHHHHHHTHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhcchHHHHHHHHHHHHhhHHHHHHHHHHHHHHH
Confidence 566666666665555566777777777777766666555554443
No 126
>2ic6_A Nucleocapsid protein; hantavirus, bunyaviridae, ssRNA negative- strand viruses, antiparallel coiled coil, viral protein; 1.15A {Sin nombre virus}
Probab=26.81 E-value=92 Score=24.44 Aligned_cols=30 Identities=13% Similarity=0.292 Sum_probs=24.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 018495 130 VMEIARLRQEQKSLDEELQGMNKRLEATER 159 (355)
Q Consensus 130 ~~EIerLKreq~~L~qEL~~Lrqr~q~~Eq 159 (355)
...|+.|+.+....+.+|...+|+++..++
T Consensus 4 M~~l~eLq~e~~~~E~QL~~A~QKLkdA~~ 33 (78)
T 2ic6_A 4 MSTLKEVQDNITLHEQRLVTTRQKLKDAER 33 (78)
T ss_dssp -CHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 357888899999999999999888876653
No 127
>3i00_A HIP-I, huntingtin-interacting protein 1; transcription; 2.30A {Homo sapiens} PDB: 2qa7_A
Probab=26.66 E-value=1.5e+02 Score=24.59 Aligned_cols=22 Identities=32% Similarity=0.425 Sum_probs=13.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHH
Q 018495 131 MEIARLRQEQKSLDEELQGMNK 152 (355)
Q Consensus 131 ~EIerLKreq~~L~qEL~~Lrq 152 (355)
..|+.|+++...|..||..++.
T Consensus 15 ~~Ie~Lkreie~lk~ele~l~~ 36 (120)
T 3i00_A 15 HLIERLYREISGLKAQLENMKT 36 (120)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHH
Confidence 4566666666666666666543
No 128
>1fxk_A Prefoldin; archaeal protein, chaperone; 2.30A {Methanothermobacter thermautotrophicusorganism_taxid} SCOP: a.2.5.1 PDB: 1fxk_B
Probab=26.63 E-value=1.8e+02 Score=22.40 Aligned_cols=28 Identities=11% Similarity=0.262 Sum_probs=11.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhHHH
Q 018495 136 LRQEQKSLDEELQGMNKRLEATERRPEQ 163 (355)
Q Consensus 136 LKreq~~L~qEL~~Lrqr~q~~Eqrqqq 163 (355)
|......+..++.+|.+++...+..++.
T Consensus 70 L~~~~e~i~~~i~~le~~~~~~~~~l~~ 97 (107)
T 1fxk_A 70 LQEKLETLQLREKTIERQEERVMKKLQE 97 (107)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3333344444444444444443333333
No 129
>3viq_B Mating-type switching protein SWI5; recombination activator; 2.20A {Schizosaccharomyces pombe} PDB: 3vir_A*
Probab=26.63 E-value=72 Score=25.37 Aligned_cols=30 Identities=20% Similarity=0.371 Sum_probs=24.8
Q ss_pred ChHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 018495 125 DDEEIVMEIARLRQEQKSLDEELQGMNKRL 154 (355)
Q Consensus 125 ~~~~L~~EIerLKreq~~L~qEL~~Lrqr~ 154 (355)
+...|..+|+.|+.+...|.+|+..++.++
T Consensus 2 ~~~~L~~~i~~L~~q~~~L~~ei~~~~a~L 31 (85)
T 3viq_B 2 EKSQLESRVHLLEQQKEQLESSLQDALAKL 31 (85)
T ss_dssp CHHHHHHHHHHHHHHHHHHHHHHHHHHHTC
T ss_pred cHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 456788999999999999999998887543
No 130
>1jnm_A Proto-oncogene C-JUN; BZIP, protein-DNA complex, transcription/DNA complex; 2.20A {Homo sapiens} SCOP: h.1.3.1 PDB: 1fos_F 2h7h_A 1t2k_C 1a02_J* 1s9k_E 1jun_A
Probab=26.52 E-value=39 Score=24.62 Aligned_cols=24 Identities=13% Similarity=0.232 Sum_probs=9.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHH
Q 018495 128 EIVMEIARLRQEQKSLDEELQGMN 151 (355)
Q Consensus 128 ~L~~EIerLKreq~~L~qEL~~Lr 151 (355)
.|..+.+.|+.+...|..|+..|+
T Consensus 33 ~L~~~n~~L~~~v~~L~~e~~~Lk 56 (62)
T 1jnm_A 33 TLKAQNSELASTANMLREQVAQLK 56 (62)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHTTC
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHH
Confidence 333344444444444444444333
No 131
>2wuj_A Septum site-determining protein diviva; bacterial cell division, septation, cell cycle, sporulation; 1.40A {Bacillus subtilis} PDB: 2wuk_A
Probab=26.20 E-value=86 Score=22.60 Aligned_cols=29 Identities=7% Similarity=0.282 Sum_probs=20.8
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 018495 126 DEEIVMEIARLRQEQKSLDEELQGMNKRL 154 (355)
Q Consensus 126 ~~~L~~EIerLKreq~~L~qEL~~Lrqr~ 154 (355)
...+..+++.|.+++..|..++.++++++
T Consensus 29 Ld~v~~~~~~l~~e~~~L~~~~~~l~~~l 57 (57)
T 2wuj_A 29 LAQVRKDYEIVLRKKTELEAKVNELDERI 57 (57)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHC-----
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhcC
Confidence 34677889999999999999999888764
No 132
>1nlw_A MAD protein, MAX dimerizer; transcription factor, DNA, BHLHZ, transcription/DNA complex; 2.00A {Homo sapiens} SCOP: a.38.1.1
Probab=26.17 E-value=81 Score=24.25 Aligned_cols=28 Identities=14% Similarity=0.227 Sum_probs=17.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 018495 128 EIVMEIARLRQEQKSLDEELQGMNKRLE 155 (355)
Q Consensus 128 ~L~~EIerLKreq~~L~qEL~~Lrqr~q 155 (355)
.|..+..+|..+...|..|...|+++++
T Consensus 51 ~L~~~~~~l~~e~~~L~~e~~~L~~~L~ 78 (80)
T 1nlw_A 51 KLEDSDRKAVHQIDQLQREQRHLKRQLE 78 (80)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 4556666666666666666666666654
No 133
>3tnu_A Keratin, type I cytoskeletal 14; coiled-coil, structural support, cytosolic protein; 3.00A {Homo sapiens}
Probab=26.09 E-value=2.1e+02 Score=23.56 Aligned_cols=28 Identities=18% Similarity=0.258 Sum_probs=16.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 018495 128 EIVMEIARLRQEQKSLDEELQGMNKRLE 155 (355)
Q Consensus 128 ~L~~EIerLKreq~~L~qEL~~Lrqr~q 155 (355)
.|..||+.|+..+..|...|..++.+..
T Consensus 49 ~L~~el~~l~~~~~sLE~~l~e~e~~~~ 76 (131)
T 3tnu_A 49 NLEIELQSQLSMKASLENSLEETKGRYC 76 (131)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHhhHHHHHHHHHHHHHHHH
Confidence 5555666666666666666655555443
No 134
>1x8y_A Lamin A/C; structural protein, intermediate filament protein; 2.20A {Homo sapiens} SCOP: h.1.20.1 PDB: 3v5b_A 3v4w_A 3v4q_A
Probab=26.06 E-value=1.8e+02 Score=22.53 Aligned_cols=37 Identities=14% Similarity=0.192 Sum_probs=22.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHH
Q 018495 130 VMEIARLRQEQKSLDEELQGMNKRLEATERRPEQMMA 166 (355)
Q Consensus 130 ~~EIerLKreq~~L~qEL~~Lrqr~q~~EqrqqqMm~ 166 (355)
..+++.++.....|..||..+|..+..+-+-.+.+|.
T Consensus 27 ~~~l~~~q~~i~~lE~el~~~r~e~~~ql~EYq~Lln 63 (86)
T 1x8y_A 27 ARERDTSRRLLAEKEREMAEMRARMQQQLDEYQELLD 63 (86)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4456666666666777777777666555444444443
No 135
>3tnu_B Keratin, type II cytoskeletal 5; coiled-coil, structural support, cytosolic protein; 3.00A {Homo sapiens}
Probab=26.00 E-value=2.1e+02 Score=23.41 Aligned_cols=21 Identities=19% Similarity=0.376 Sum_probs=9.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHH
Q 018495 131 MEIARLRQEQKSLDEELQGMN 151 (355)
Q Consensus 131 ~EIerLKreq~~L~qEL~~Lr 151 (355)
.||..|++..+.|..||..++
T Consensus 36 ~Ei~elrr~iq~L~~el~~l~ 56 (129)
T 3tnu_B 36 HEISEMNRMIQRLRAEIDNVK 56 (129)
T ss_dssp HHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHH
Confidence 344444444444444444433
No 136
>1ic2_A Tropomyosin alpha chain, skeletal muscle; alpha-helical coiled coil, alanine, symmetry, axial stagger, BEND, contractIle protein; 2.00A {Gallus gallus} SCOP: h.1.5.1
Probab=25.81 E-value=2.2e+02 Score=21.57 Aligned_cols=27 Identities=22% Similarity=0.363 Sum_probs=12.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 018495 130 VMEIARLRQEQKSLDEELQGMNKRLEA 156 (355)
Q Consensus 130 ~~EIerLKreq~~L~qEL~~Lrqr~q~ 156 (355)
+.+|..|++....|..+|.+...++..
T Consensus 40 E~ev~~L~kKiq~lE~eld~~ee~l~~ 66 (81)
T 1ic2_A 40 EDELVALQKKLKGTEDELDKYSESLKD 66 (81)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 344444444444444444444444433
No 137
>1uii_A Geminin; human, DNA replication, cell cycle; 2.00A {Homo sapiens} SCOP: h.1.28.1
Probab=25.61 E-value=2.3e+02 Score=22.42 Aligned_cols=32 Identities=22% Similarity=0.292 Sum_probs=21.7
Q ss_pred ChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 018495 125 DDEEIVMEIARLRQEQKSLDEELQGMNKRLEA 156 (355)
Q Consensus 125 ~~~~L~~EIerLKreq~~L~qEL~~Lrqr~q~ 156 (355)
++..|..+|+.|+.+...|..|+..|+.-.+.
T Consensus 47 EN~~Lh~~ie~l~eEi~~lk~en~eL~elae~ 78 (83)
T 1uii_A 47 ENEKLHKEIEQKDNEIARLKKENKELAEVAEH 78 (83)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 45577777777777777777777766655443
No 138
>1gk4_A Vimentin; intermediate filament, dimer, parallel coiled coil, heptad repeat, stutter; 2.3A {Homo sapiens} SCOP: h.1.20.1
Probab=25.59 E-value=1.8e+02 Score=22.22 Aligned_cols=20 Identities=20% Similarity=0.511 Sum_probs=8.4
Q ss_pred HHHHHHHHHHHHHHHHHHHH
Q 018495 133 IARLRQEQKSLDEELQGMNK 152 (355)
Q Consensus 133 IerLKreq~~L~qEL~~Lrq 152 (355)
|+.|+..+..|...|..+.+
T Consensus 3 l~~l~~~~~sLE~~l~e~e~ 22 (84)
T 1gk4_A 3 VDALKGTNESLERQMREMEE 22 (84)
T ss_dssp HHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHH
Confidence 34444444444444444333
No 139
>3u59_A Tropomyosin beta chain; muscle contraction, actin, contractIle protein; 2.50A {Gallus gallus}
Probab=25.56 E-value=2.5e+02 Score=22.12 Aligned_cols=44 Identities=25% Similarity=0.337 Sum_probs=26.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHh
Q 018495 128 EIVMEIARLRQEQKSLDEELQGMNKRLEATERRPEQMMAFLYKV 171 (355)
Q Consensus 128 ~L~~EIerLKreq~~L~qEL~~Lrqr~q~~EqrqqqMm~FLakv 171 (355)
.++.++..+......+..||..|+++++.++......-.-|..+
T Consensus 27 ~~e~~~k~~e~~~~~~E~ei~sL~kKiq~lE~eld~~~e~l~~a 70 (101)
T 3u59_A 27 QAEADKKQAEDRCKQLEEEQQGLQKKLKGTEDEVEKYSESVKEA 70 (101)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 44455555556666667777777777776666655555544433
No 140
>1gu4_A CAAT/enhancer binding protein beta; transcription/DNA, protein-DNA complex, transcription factor, BZIP, C/EBP; 1.80A {Homo sapiens} SCOP: h.1.3.1 PDB: 1gtw_A 1gu5_A 1h88_A 1h8a_A 1io4_A 2e43_A* 2e42_A* 1h89_A 1ci6_B 1nwq_A
Probab=25.50 E-value=72 Score=24.75 Aligned_cols=22 Identities=18% Similarity=0.271 Sum_probs=9.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHH
Q 018495 136 LRQEQKSLDEELQGMNKRLEAT 157 (355)
Q Consensus 136 LKreq~~L~qEL~~Lrqr~q~~ 157 (355)
+......|..|=..|+.+++.+
T Consensus 41 ~~~r~~~L~~eN~~L~~~v~~L 62 (78)
T 1gu4_A 41 TQHKVLELTAENERLQKKVEQL 62 (78)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHH
Confidence 3333344444444444444443
No 141
>1t2k_D Cyclic-AMP-dependent transcription factor ATF-2; protein DNA complex, transcription/DNA complex; 3.00A {Homo sapiens} SCOP: h.1.3.1
Probab=25.41 E-value=1.9e+02 Score=20.73 Aligned_cols=29 Identities=7% Similarity=0.125 Sum_probs=12.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhH
Q 018495 133 IARLRQEQKSLDEELQGMNKRLEATERRP 161 (355)
Q Consensus 133 IerLKreq~~L~qEL~~Lrqr~q~~Eqrq 161 (355)
++.|..+...|..+-..|+.++..++...
T Consensus 24 ~~~Le~~~~~L~~~n~~L~~~i~~L~~e~ 52 (61)
T 1t2k_D 24 VQSLEKKAEDLSSLNGQLQSEVTLLRNEV 52 (61)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 44444444444444444444444444333
No 142
>1fmh_B General control protein GCN4; coiled coil, leucine zipper, inter-helical ION pairing, transcription; NMR {Synthetic} SCOP: k.6.1.1 PDB: 1u2u_B
Probab=25.38 E-value=1.2e+02 Score=19.76 Aligned_cols=25 Identities=12% Similarity=0.290 Sum_probs=12.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH
Q 018495 133 IARLRQEQKSLDEELQGMNKRLEAT 157 (355)
Q Consensus 133 IerLKreq~~L~qEL~~Lrqr~q~~ 157 (355)
++.||+..++|...-...+|+++.+
T Consensus 3 vqalkkrvqalkarnyaakqkvqal 27 (33)
T 1fmh_B 3 VQALKKRVQALKARNYAAKQKVQAL 27 (33)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhhHHHHHHHHHH
Confidence 4445555555554444444444443
No 143
>3na7_A HP0958; flagellar biogenesis, flagellum export, C4 Zn-ribbon, coiled post-transcriptional, gene regulation, chaperone; HET: EPE; 2.20A {Helicobacter pylori}
Probab=25.35 E-value=1.7e+02 Score=26.47 Aligned_cols=34 Identities=6% Similarity=0.234 Sum_probs=22.6
Q ss_pred ChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 018495 125 DDEEIVMEIARLRQEQKSLDEELQGMNKRLEATE 158 (355)
Q Consensus 125 ~~~~L~~EIerLKreq~~L~qEL~~Lrqr~q~~E 158 (355)
+...|..||+.++++...|..++..+..+++..+
T Consensus 91 E~~aL~kEie~~~~~i~~lE~eile~~e~ie~~~ 124 (256)
T 3na7_A 91 ELRSLNIEEDIAKERSNQANREIENLQNEIKRKS 124 (256)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4557777777777777777777666655554443
No 144
>1gmj_A ATPase inhibitor; coiled-coil structure, P dependent oligomerization, ATP hydrolysis; 2.2A {Bos taurus} SCOP: h.4.8.1 PDB: 1ohh_H* 1hf9_A
Probab=25.32 E-value=1.9e+02 Score=22.87 Aligned_cols=39 Identities=15% Similarity=0.301 Sum_probs=0.0
Q ss_pred hHHHHHHHHHHH----HHHHHHHHHHHHHHHHHHHHHHhHHHH
Q 018495 126 DEEIVMEIARLR----QEQKSLDEELQGMNKRLEATERRPEQM 164 (355)
Q Consensus 126 ~~~L~~EIerLK----req~~L~qEL~~Lrqr~q~~EqrqqqM 164 (355)
...-..++..|| .+...-..||.++++.+....++++.|
T Consensus 35 rqkekEqL~~LKkkl~~el~~h~~ei~~le~~i~rhk~~i~~l 77 (84)
T 1gmj_A 35 RARAKEQLAALKKHKENEISHHAKEIERLQKEIERHKQSIKKL 77 (84)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
No 145
>4etp_A Kinesin-like protein KAR3; kinesin motor protein, kinesin motor homology domain, karyog mitosis, microtubules; HET: ADP EBC; 2.30A {Saccharomyces cerevisiae}
Probab=25.22 E-value=1.8e+02 Score=28.52 Aligned_cols=39 Identities=18% Similarity=0.215 Sum_probs=22.5
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHH
Q 018495 126 DEEIVMEIARLRQEQKSLDEELQGMNKRLEATERRPEQM 164 (355)
Q Consensus 126 ~~~L~~EIerLKreq~~L~qEL~~Lrqr~q~~EqrqqqM 164 (355)
...+..+++.|+++.+.+..|+.++++++...+..-+++
T Consensus 12 ~~~l~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~rr~l 50 (403)
T 4etp_A 12 IAALKEKIAALKEKIKDTELGMKELNEILIKEETVRRTL 50 (403)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 345556666666666666666666666655555444444
No 146
>3r4h_A Coiled coil helix CC-TET-PHI22; coiled coil domain, tetramer, KIH interactions, synthetic BI NOVO protein; HET: PHI; 2.70A {Synthetic}
Probab=25.14 E-value=79 Score=20.68 Aligned_cols=24 Identities=25% Similarity=0.415 Sum_probs=11.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHH
Q 018495 128 EIVMEIARLRQEQKSLDEELQGMN 151 (355)
Q Consensus 128 ~L~~EIerLKreq~~L~qEL~~Lr 151 (355)
.+..|+..+|++..++.-||..++
T Consensus 6 aikqelaaikkelaaikfelaaik 29 (34)
T 3r4h_A 6 AIKQELAAIKKELAAIKFELAAIK 29 (34)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHH
Confidence 344444444555544444444443
No 147
>1jcd_A Major outer membrane lipoprotein; protein folding, coiled coil, helix capping, alanine-zipper, membrane protein; 1.30A {Escherichia coli} SCOP: h.1.16.1 PDB: 1eq7_A 1t8z_A* 2guv_A 2gus_A 1jcc_A 1kfn_A 1kfm_A
Probab=24.85 E-value=1.7e+02 Score=21.07 Aligned_cols=24 Identities=0% Similarity=0.023 Sum_probs=10.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHH
Q 018495 129 IVMEIARLRQEQKSLDEELQGMNK 152 (355)
Q Consensus 129 L~~EIerLKreq~~L~qEL~~Lrq 152 (355)
|..+|..|..+...|..++..++.
T Consensus 9 Lss~V~~L~~kVdqLssdV~al~~ 32 (52)
T 1jcd_A 9 ASSDAQTANAKADQASNDANAARS 32 (52)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHH
Confidence 334444444444444444444443
No 148
>1am9_A Srebp-1A, protein (sterol regulatory element binding protein 1A); basic-helix-loop- helix-leucine zipper, transcription factor; HET: DNA; 2.30A {Homo sapiens} SCOP: a.38.1.1 PDB: 1ukl_C
Probab=24.84 E-value=96 Score=23.71 Aligned_cols=28 Identities=14% Similarity=0.197 Sum_probs=20.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 018495 131 MEIARLRQEQKSLDEELQGMNKRLEATE 158 (355)
Q Consensus 131 ~EIerLKreq~~L~qEL~~Lrqr~q~~E 158 (355)
.=|..|+.+...|..|+..|+.+++..+
T Consensus 50 ~YI~~Lq~~~~~L~~e~~~L~~~~~~~~ 77 (82)
T 1am9_A 50 DYIRFLQHSNQKLKQENLSLRTAVHKSK 77 (82)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhhh
Confidence 3467777888888888888887776543
No 149
>1fxk_A Prefoldin; archaeal protein, chaperone; 2.30A {Methanothermobacter thermautotrophicusorganism_taxid} SCOP: a.2.5.1 PDB: 1fxk_B
Probab=24.71 E-value=1e+02 Score=23.89 Aligned_cols=38 Identities=16% Similarity=0.326 Sum_probs=22.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHH
Q 018495 127 EEIVMEIARLRQEQKSLDEELQGMNKRLEATERRPEQM 164 (355)
Q Consensus 127 ~~L~~EIerLKreq~~L~qEL~~Lrqr~q~~EqrqqqM 164 (355)
..|...++.+..+...|..++..++.++..++..++++
T Consensus 68 ~~L~~~~e~i~~~i~~le~~~~~~~~~l~~lk~~l~~~ 105 (107)
T 1fxk_A 68 EELQEKLETLQLREKTIERQEERVMKKLQEMQVNIQEA 105 (107)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTT
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 35555566666666666666666666666655555443
No 150
>3swf_A CGMP-gated cation channel alpha-1; coiled-coil, assembly domain, transport protein; 2.14A {Bos taurus}
Probab=24.65 E-value=2.2e+02 Score=22.01 Aligned_cols=28 Identities=14% Similarity=0.248 Sum_probs=21.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 018495 127 EEIVMEIARLRQEQKSLDEELQGMNKRL 154 (355)
Q Consensus 127 ~~L~~EIerLKreq~~L~qEL~~Lrqr~ 154 (355)
..|+.-++.|+-..+.|..|....++++
T Consensus 10 ~~LE~sld~LQTrfARLLaEy~ssQ~KL 37 (74)
T 3swf_A 10 TRMESSVDLLQTRFARILAEYESMQQKL 37 (74)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4678889999999999998887654443
No 151
>3vmx_A Voltage-gated hydrogen channel 1; coiled-coil, ION channel, ION transport, membrane protein; 1.45A {Mus musculus}
Probab=24.61 E-value=1.6e+02 Score=21.14 Aligned_cols=30 Identities=20% Similarity=0.348 Sum_probs=23.5
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 018495 126 DEEIVMEIARLRQEQKSLDEELQGMNKRLE 155 (355)
Q Consensus 126 ~~~L~~EIerLKreq~~L~qEL~~Lrqr~q 155 (355)
+..|...|..|+.....+.+|+.+|+.-++
T Consensus 13 n~~L~~kv~~Le~~c~~~eQEieRL~~LLk 42 (48)
T 3vmx_A 13 NIQLATKIQHLEFSCSEKEQEIERLNKLLK 42 (48)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHccHHHHHHHHHHHHHH
Confidence 446677888888888888888888877654
No 152
>3efg_A Protein SLYX homolog; xanthomonas campestris PV. campestris, coiled-coil, structur genomics, PSI-2, protein structure initiative; 2.00A {Xanthomonas campestris PV}
Probab=24.60 E-value=1.6e+02 Score=22.65 Aligned_cols=43 Identities=12% Similarity=0.225 Sum_probs=25.1
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHH
Q 018495 126 DEEIVMEIARLRQEQKSLDEELQGMNKRLEATERRPEQMMAFL 168 (355)
Q Consensus 126 ~~~L~~EIerLKreq~~L~qEL~~Lrqr~q~~EqrqqqMm~FL 168 (355)
...++..|..|......+..-|..|.+-+-.+++.+..|-.-|
T Consensus 9 ~~~le~Ri~~LE~klAfqE~tIeeLn~~v~~Qq~~Id~L~~ql 51 (78)
T 3efg_A 9 DQELEARLVELETRLSFQEQALTELSEALADARLTGARNAELI 51 (78)
T ss_dssp CTHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3456677777777666666666666665555554444443333
No 153
>3oja_B Anopheles plasmodium-responsive leucine-rich REPE 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae}
Probab=24.60 E-value=1.5e+02 Score=29.27 Aligned_cols=34 Identities=18% Similarity=0.235 Sum_probs=14.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHH
Q 018495 130 VMEIARLRQEQKSLDEELQGMNKRLEATERRPEQ 163 (355)
Q Consensus 130 ~~EIerLKreq~~L~qEL~~Lrqr~q~~Eqrqqq 163 (355)
+.++++++++.+.+++++..++++...+|++.+.
T Consensus 522 ~~~~~~~~~~~~~~~~~~~~~~~~~~~le~~~~~ 555 (597)
T 3oja_B 522 LRETQARRTEADAKQKETEDLEQENIALEKQLDN 555 (597)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHhhhhhhcchhhHHhhhHHHHHHHhh
Confidence 3344444444444444444444444444443333
No 154
>1fzc_C Fibrin; blood coagulation, plasma protein, crosslinking; HET: NAG MAN; 2.30A {Homo sapiens} SCOP: d.171.1.1 h.1.8.1 PDB: 1fzb_C* 1fza_C* 1fze_C* 1fzf_C* 1fzg_C* 2xnx_C 2xny_C 3e1i_C* 2hlo_C* 1n8e_C 1n86_C* 2q9i_C* 2z4e_C* 2h43_C* 2hod_C* 2hpc_C* 3h32_C* 1re3_C* 1ltj_C* 1lt9_C* ...
Probab=24.42 E-value=36 Score=32.93 Aligned_cols=25 Identities=12% Similarity=0.220 Sum_probs=11.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH
Q 018495 130 VMEIARLRQEQKSLDEELQGMNKRL 154 (355)
Q Consensus 130 ~~EIerLKreq~~L~qEL~~Lrqr~ 154 (355)
+.+|..|+...+.+..+|..|++++
T Consensus 17 ~~~i~~L~~~l~~~~~ki~~L~~~i 41 (319)
T 1fzc_C 17 DSSIRYLQEIYNSNNQKIVNLKEKV 41 (319)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3444444444444444444444333
No 155
>1a93_B MAX protein, coiled coil, LZ; leucine zipper, 2D solution structure, H-bonds, buried salt bridge, proto-oncogene, nuclear protein; NMR {Mus musculus} SCOP: h.1.3.1 PDB: 2a93_B
Probab=24.11 E-value=1.1e+02 Score=20.48 Aligned_cols=26 Identities=8% Similarity=0.350 Sum_probs=17.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhH
Q 018495 136 LRQEQKSLDEELQGMNKRLEATERRP 161 (355)
Q Consensus 136 LKreq~~L~qEL~~Lrqr~q~~Eqrq 161 (355)
+++.+++..+++.+|+++.-.++..+
T Consensus 5 mRrKn~a~qqDIddlkrQN~~Le~Qi 30 (34)
T 1a93_B 5 MRRKNDTHQQDIDDLKRQNALLEQQV 30 (34)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HhhhhHhhHhhHHHHHHHHHHHHHHH
Confidence 56777777777877777766555443
No 156
>1go4_E MAD1 (mitotic arrest deficient)-like 1; mitotic spindle checkpoint, cell cycle, mitosis, nuclear Pro; 2.05A {Homo sapiens} SCOP: h.1.22.1
Probab=23.58 E-value=1.2e+02 Score=24.64 Aligned_cols=31 Identities=23% Similarity=0.438 Sum_probs=24.0
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 018495 126 DEEIVMEIARLRQEQKSLDEELQGMNKRLEA 156 (355)
Q Consensus 126 ~~~L~~EIerLKreq~~L~qEL~~Lrqr~q~ 156 (355)
...+..+|+.|+.++..|.+++..|.-++..
T Consensus 14 ~~~lr~ei~~Le~E~~rLr~~~~~LE~~Le~ 44 (100)
T 1go4_E 14 ADTLRLKVEELEGERSRLEEEKRMLEAQLER 44 (100)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4467788888888888888888887777654
No 157
>3efg_A Protein SLYX homolog; xanthomonas campestris PV. campestris, coiled-coil, structur genomics, PSI-2, protein structure initiative; 2.00A {Xanthomonas campestris PV}
Probab=23.40 E-value=2.5e+02 Score=21.48 Aligned_cols=44 Identities=16% Similarity=0.075 Sum_probs=27.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHH
Q 018495 127 EEIVMEIARLRQEQKSLDEELQGMNKRLEATERRPEQMMAFLYK 170 (355)
Q Consensus 127 ~~L~~EIerLKreq~~L~qEL~~Lrqr~q~~EqrqqqMm~FLak 170 (355)
..|+..+.-+..-...|...|.+..+.+..++++++.|..-|..
T Consensus 17 ~~LE~klAfqE~tIeeLn~~v~~Qq~~Id~L~~ql~~L~~rl~~ 60 (78)
T 3efg_A 17 VELETRLSFQEQALTELSEALADARLTGARNAELIRHLLEDLGK 60 (78)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTC--
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 36666777777777777777777777776666666555554443
No 158
>2ovc_A Potassium voltage-gated channel subfamily KQT MEM; potassium channel, ION channel assemb coiled-coil, tetramer, transport protein; 2.07A {Homo sapiens}
Probab=23.15 E-value=1.2e+02 Score=20.04 Aligned_cols=27 Identities=11% Similarity=0.290 Sum_probs=21.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHhHHHHHH
Q 018495 140 QKSLDEELQGMNKRLEATERRPEQMMA 166 (355)
Q Consensus 140 q~~L~qEL~~Lrqr~q~~EqrqqqMm~ 166 (355)
...+...|.++.+++..++++++.|+.
T Consensus 5 ~~Sm~~Rl~kVE~qv~~md~KLd~l~~ 31 (33)
T 2ovc_A 5 EISMMGRVVKVEKQVQSIEHKLDLLLG 31 (33)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHT
T ss_pred cchHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 346777888888899998888877754
No 159
>1gk4_A Vimentin; intermediate filament, dimer, parallel coiled coil, heptad repeat, stutter; 2.3A {Homo sapiens} SCOP: h.1.20.1
Probab=23.02 E-value=2.2e+02 Score=21.78 Aligned_cols=36 Identities=19% Similarity=0.362 Sum_probs=20.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHH
Q 018495 131 MEIARLRQEQKSLDEELQGMNKRLEATERRPEQMMA 166 (355)
Q Consensus 131 ~EIerLKreq~~L~qEL~~Lrqr~q~~EqrqqqMm~ 166 (355)
.+++.++.....|..+|..++..+..+-+-.+.+|.
T Consensus 26 ~~~~~~q~~i~~lE~eL~~~r~e~~~q~~EYq~Lln 61 (84)
T 1gk4_A 26 VEAANYQDTIGRLQDEIQNMKEEMARHLREYQDLLN 61 (84)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 345555555566666666666666555444444443
No 160
>4gkw_A Spindle assembly abnormal protein 6; double helix, SAS-5, centriole, structural protein; 3.30A {Caenorhabditis elegans}
Probab=22.76 E-value=2.3e+02 Score=24.51 Aligned_cols=38 Identities=16% Similarity=0.304 Sum_probs=19.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHH
Q 018495 132 EIARLRQEQKSLDEELQGMNKRLEATERRPEQMMAFLY 169 (355)
Q Consensus 132 EIerLKreq~~L~qEL~~Lrqr~q~~EqrqqqMm~FLa 169 (355)
.+++|++.+.+-..||.+||..+...++..++.-..|.
T Consensus 47 KVDQlqKRn~~HQKEi~~Lrae~~~~QRn~~K~~~~Lk 84 (167)
T 4gkw_A 47 KVDQLQKRNVAHQKEIGKLRAELGTAQRNLEKADQLLK 84 (167)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred hHHHHHHhccHHHHHHHHHHHHHHHHHHhHHHHHHHHH
Confidence 35555555555555666665555444444444444443
No 161
>3r4h_A Coiled coil helix CC-TET-PHI22; coiled coil domain, tetramer, KIH interactions, synthetic BI NOVO protein; HET: PHI; 2.70A {Synthetic}
Probab=22.72 E-value=1.5e+02 Score=19.36 Aligned_cols=25 Identities=32% Similarity=0.511 Sum_probs=18.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH
Q 018495 132 EIARLRQEQKSLDEELQGMNKRLEA 156 (355)
Q Consensus 132 EIerLKreq~~L~qEL~~Lrqr~q~ 156 (355)
|+..+|++..++..||..++=.+-.
T Consensus 3 elaaikqelaaikkelaaikfelaa 27 (34)
T 3r4h_A 3 ELAAIKQELAAIKKELAAIKFELAA 27 (34)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 6777788888888888777665544
No 162
>3oja_A Leucine-rich immune molecule 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae}
Probab=22.68 E-value=1.5e+02 Score=28.69 Aligned_cols=17 Identities=0% Similarity=0.011 Sum_probs=6.4
Q ss_pred HHHHHHHHHHHHHHHHH
Q 018495 138 QEQKSLDEELQGMNKRL 154 (355)
Q Consensus 138 req~~L~qEL~~Lrqr~ 154 (355)
++.+....|+..++++.
T Consensus 435 ~~~~~~~~~~~~~~~~~ 451 (487)
T 3oja_A 435 RDWDMYQHKETQLAEEN 451 (487)
T ss_dssp HHHHHHHHHHHHHHHHH
T ss_pred hhhhhhhhHHHHHHHHh
Confidence 33333333333333333
No 163
>3cvf_A Homer-3, homer protein homolog 3; coiled coil, alternative splicing, cell junction, cytoplasm, membrane, phosphoprotein, polymorphism; 2.90A {Homo sapiens}
Probab=22.57 E-value=2.8e+02 Score=21.62 Aligned_cols=42 Identities=12% Similarity=0.241 Sum_probs=23.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHH
Q 018495 127 EEIVMEIARLRQEQKSLDEELQGMNKRLEATERRPEQMMAFL 168 (355)
Q Consensus 127 ~~L~~EIerLKreq~~L~qEL~~Lrqr~q~~EqrqqqMm~FL 168 (355)
..++.+...|++....|..+|..-+.++...+.-+++++.-|
T Consensus 16 q~~E~rN~~Le~~v~~le~~Le~s~~~q~~~~~Elk~l~e~L 57 (79)
T 3cvf_A 16 QDLETRNAELEHQLRAMERSLEEARAERERARAEVGRAAQLL 57 (79)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 355556666666666666666666555555444444444443
No 164
>1ykh_B RNA polymerase II holoenzyme component SRB7; gene regulation; 3.00A {Saccharomyces cerevisiae} SCOP: a.252.1.1
Probab=22.57 E-value=1.8e+02 Score=24.31 Aligned_cols=43 Identities=21% Similarity=0.274 Sum_probs=27.7
Q ss_pred CChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHH
Q 018495 124 LDDEEIVMEIARLRQEQKSLDEELQGMNKRLEATERRPEQMMA 166 (355)
Q Consensus 124 ~~~~~L~~EIerLKreq~~L~qEL~~Lrqr~q~~EqrqqqMm~ 166 (355)
...+.-..+|.+|..++....+|+....++-+..-.+++.++.
T Consensus 85 ~see~Q~~ri~~L~~E~~~~~~el~~~v~e~e~ll~~v~~~l~ 127 (132)
T 1ykh_B 85 VSAEEQLRKIDMLQKKLVEVEDEKIEAIKKKEKLMRHVDSMIE 127 (132)
T ss_dssp CCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred CCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3445556778888888888888877666655554444444443
No 165
>1fxk_C Protein (prefoldin); archaeal protein, chaperone; 2.30A {Methanothermobacter thermautotrophicusorganism_taxid} SCOP: a.2.5.1
Probab=22.51 E-value=2.4e+02 Score=22.74 Aligned_cols=45 Identities=13% Similarity=0.212 Sum_probs=36.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHhh
Q 018495 128 EIVMEIARLRQEQKSLDEELQGMNKRLEATERRPEQMMAFLYKVV 172 (355)
Q Consensus 128 ~L~~EIerLKreq~~L~qEL~~Lrqr~q~~EqrqqqMm~FLakvv 172 (355)
.+++-++-|++....|...+..+.+.+.....++..|..-|..++
T Consensus 85 ~~~eA~~~l~~r~~~l~~~~~~l~~~l~~l~~~i~~~~~~l~~~~ 129 (133)
T 1fxk_C 85 NFEDAMESIKSQKNELESTLQKMGENLRAITDIMMKLSPQAEELL 129 (133)
T ss_dssp EHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred eHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 556778888888899999999999888888888888887777665
No 166
>2w83_C C-JUN-amino-terminal kinase-interacting protein 4; golgi apparatus, protein transport, ER-golgi transport, ARF, GTPase, effector, myristate; HET: GTP; 1.93A {Homo sapiens}
Probab=22.34 E-value=95 Score=24.30 Aligned_cols=16 Identities=19% Similarity=0.486 Sum_probs=7.6
Q ss_pred HHHHHHHHHHHHHHHH
Q 018495 128 EIVMEIARLRQEQKSL 143 (355)
Q Consensus 128 ~L~~EIerLKreq~~L 143 (355)
.|..|..+|..-+++|
T Consensus 13 nLi~EN~eLl~TKNaL 28 (77)
T 2w83_C 13 NLILENTQLLETKNAL 28 (77)
T ss_dssp HHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHH
Confidence 4444555554444443
No 167
>3m9b_A Proteasome-associated ATPase; coil COIL with 5 beta-strand barrel inter domain, chaperone; 3.94A {Mycobacterium tuberculosis} PDB: 3m9d_A
Probab=22.34 E-value=65 Score=30.31 Aligned_cols=54 Identities=11% Similarity=0.127 Sum_probs=41.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHhhcCCCcHHHHHh
Q 018495 130 VMEIARLRQEQKSLDEELQGMNKRLEATERRPEQMMAFLYKVVEDPDLLPRIIM 183 (355)
Q Consensus 130 ~~EIerLKreq~~L~qEL~~Lrqr~q~~EqrqqqMm~FLakvvqnP~fl~~li~ 183 (355)
+..++.|+++...|.....+|.+.++...+.+.++-.=|.++-+=|-++-.++.
T Consensus 53 ~~~l~eL~~ql~~L~arNe~L~~~Lk~ar~El~~LkeElerL~sPPL~iGtvle 106 (251)
T 3m9b_A 53 ARDIHQLEARIDSLAARNSKLMETLKEARQQLLALREEVDRLGQPPSGYGVLLA 106 (251)
T ss_dssp CHHHHHHHHHHHHHTTTHHHHHHHHHHHHHHHHHHHHHHHHHHSCCEEEEEEEE
T ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCceEEEEEE
Confidence 446778888888888888888888888888888888888888777766544433
No 168
>3ghg_A Fibrinogen alpha chain; triple-stranded coiled coil, beta sheets, alpha helices, AMY amyloidosis, blood coagulation, disease mutation, glycoprot phosphoprotein; HET: NAG NDG BMA MAN GAL SIA; 2.90A {Homo sapiens} PDB: 3h32_A* 2a45_G*
Probab=22.34 E-value=1.3e+02 Score=31.25 Aligned_cols=37 Identities=14% Similarity=0.167 Sum_probs=15.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHH
Q 018495 128 EIVMEIARLRQEQKSLDEELQGMNKRLEATERRPEQM 164 (355)
Q Consensus 128 ~L~~EIerLKreq~~L~qEL~~Lrqr~q~~EqrqqqM 164 (355)
+|+..|+.||++.+.-.+.|..|+..++.+-..||+|
T Consensus 114 ELRRrIqyLKekVdnQlsnIrvLQsnLedq~~kIQRL 150 (562)
T 3ghg_A 114 DLRSRIEVLKRKVIEKVQHIQLLQKNVRAQLVDMKRL 150 (562)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3444444444444333344444444444444444443
No 169
>2oqq_A Transcription factor HY5; homodimer leucine zipper; 2.00A {Arabidopsis thaliana}
Probab=22.24 E-value=2e+02 Score=20.01 Aligned_cols=27 Identities=19% Similarity=0.346 Sum_probs=15.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 018495 128 EIVMEIARLRQEQKSLDEELQGMNKRL 154 (355)
Q Consensus 128 ~L~~EIerLKreq~~L~qEL~~Lrqr~ 154 (355)
+|+.+...|...+..|...+..|....
T Consensus 7 eLE~r~k~le~~naeLEervstLq~EN 33 (42)
T 2oqq_A 7 ELENRVKDLENKNSELEERLSTLQNEN 33 (42)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhH
Confidence 455555555555555555555555443
No 170
>3mtu_A Tropomyosin alpha-1 chain, microtubule-associated RP/EB family member 1; tropomysoin, overlap complex, coiled-coils, contractIle PROT; HET: MSE; 2.10A {Gallus gallus} PDB: 3mud_C*
Probab=22.10 E-value=2.3e+02 Score=21.50 Aligned_cols=26 Identities=15% Similarity=0.234 Sum_probs=11.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHH
Q 018495 134 ARLRQEQKSLDEELQGMNKRLEATER 159 (355)
Q Consensus 134 erLKreq~~L~qEL~~Lrqr~q~~Eq 159 (355)
+.+|+..++|..|...+..+++.+|+
T Consensus 5 ~aiKkkmqaLk~Ekdna~e~~e~lE~ 30 (75)
T 3mtu_A 5 DAIKKKMQMLKLDKENALDRAEQAEA 30 (75)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33444444444444444444444443
No 171
>1wlq_A Geminin; coiled-coil; 2.80A {Mus musculus} PDB: 2zxx_A*
Probab=22.06 E-value=1.4e+02 Score=23.63 Aligned_cols=31 Identities=23% Similarity=0.294 Sum_probs=20.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 018495 128 EIVMEIARLRQEQKSLDEELQGMNKRLEATE 158 (355)
Q Consensus 128 ~L~~EIerLKreq~~L~qEL~~Lrqr~q~~E 158 (355)
.-..|.++|..+...+..|+.+|++..+.+.
T Consensus 35 eaL~EN~~Lh~~ie~~~eEi~~Lk~en~~L~ 65 (83)
T 1wlq_A 35 EALKENEKLHKEIEQKDSEIARLRKENKDLA 65 (83)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHTH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3345667777777777777777776655443
No 172
>1yke_B RNA polymerase II holoenzyme component SRB7; gene regulation; 3.30A {Saccharomyces cerevisiae} SCOP: a.252.1.1
Probab=21.89 E-value=1.8e+02 Score=25.02 Aligned_cols=42 Identities=19% Similarity=0.262 Sum_probs=25.4
Q ss_pred CChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHH
Q 018495 124 LDDEEIVMEIARLRQEQKSLDEELQGMNKRLEATERRPEQMM 165 (355)
Q Consensus 124 ~~~~~L~~EIerLKreq~~L~qEL~~Lrqr~q~~EqrqqqMm 165 (355)
...+.-..+|.+|..++....+|+....++-+..-.+++.++
T Consensus 85 ~seeeQ~~ri~~Le~E~~~~~~el~~~v~eae~ll~~v~~~l 126 (151)
T 1yke_B 85 VSAEEQLRKIDMLQKKLVEVEDEKIEAIKKKEKLLRHVDSLI 126 (151)
T ss_dssp SCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred CCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 344555677888888888777777665555444433343333
No 173
>3cve_A Homer protein homolog 1; coiled coil, alternative splicing, cell junction, cytoplasm, membrane, postsynaptic cell membrane, synapse; 1.75A {Rattus norvegicus}
Probab=21.55 E-value=2.8e+02 Score=21.27 Aligned_cols=40 Identities=10% Similarity=0.229 Sum_probs=19.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHH
Q 018495 128 EIVMEIARLRQEQKSLDEELQGMNKRLEATERRPEQMMAF 167 (355)
Q Consensus 128 ~L~~EIerLKreq~~L~qEL~~Lrqr~q~~EqrqqqMm~F 167 (355)
.++.+...|++....|...|..-+.++...+..+++++.-
T Consensus 11 ~~E~~N~~Le~~v~~le~~Le~s~~~q~~~~~Elk~~~e~ 50 (72)
T 3cve_A 11 EVEIRNKDLEGQLSEMEQRLEKSQSEQDAFRSNLKTLLEI 50 (72)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4444555555555555555555554444444334443333
No 174
>3w03_C DNA repair protein XRCC4; coiled-coil, NHEJ, DSBS repair, KU70/80, DNA-PKCS, DNA ligas binding protein; HET: DNA; 8.49A {Homo sapiens}
Probab=21.55 E-value=1.2e+02 Score=27.23 Aligned_cols=24 Identities=17% Similarity=0.194 Sum_probs=10.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHH
Q 018495 131 MEIARLRQEQKSLDEELQGMNKRL 154 (355)
Q Consensus 131 ~EIerLKreq~~L~qEL~~Lrqr~ 154 (355)
..+..|+.++..|.+|-.+|++..
T Consensus 152 d~~~~L~~~n~~LqkeNeRL~~E~ 175 (184)
T 3w03_C 152 DTIAENQAKNEHLQKENERLLRDW 175 (184)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHH
Confidence 344444444444444444444443
No 175
>2v71_A Nuclear distribution protein NUDE-like 1; developmental protein, nuclear protein, neurogenesis, cytosk LIS1 binding, differentiation; 2.24A {Rattus norvegicus}
Probab=21.52 E-value=2.6e+02 Score=25.08 Aligned_cols=34 Identities=12% Similarity=0.232 Sum_probs=21.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 018495 127 EEIVMEIARLRQEQKSLDEELQGMNKRLEATERR 160 (355)
Q Consensus 127 ~~L~~EIerLKreq~~L~qEL~~Lrqr~q~~Eqr 160 (355)
..|..+|..|+..+..|...|..|.+..+.+|+.
T Consensus 91 ~~Lq~el~~l~~~~~~l~~~ireLEq~NDdlEr~ 124 (189)
T 2v71_A 91 SVLEDDLSQTRAIKEQLHKYVRELEQANDDLERA 124 (189)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHH
Confidence 3555666666666666666666666666655544
No 176
>2wg5_A General control protein GCN4, proteasome-activating nucleotidase; transcription hydrolase complex, nucleotide-binding; 2.10A {Saccharomyces cerevisiae} PDB: 2wg6_A
Probab=21.21 E-value=75 Score=25.70 Aligned_cols=25 Identities=8% Similarity=0.159 Sum_probs=14.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH
Q 018495 132 EIARLRQEQKSLDEELQGMNKRLEA 156 (355)
Q Consensus 132 EIerLKreq~~L~qEL~~Lrqr~q~ 156 (355)
.+.+|+.+++.|..|+..++++++.
T Consensus 8 ~~~~l~~~~~~l~~~i~~lkeel~~ 32 (109)
T 2wg5_A 8 RMKQLEDKVEELLSKNYHLENEVAR 32 (109)
T ss_dssp -CHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3455666666666666666666543
No 177
>1whv_A Poly(A)-specific ribonuclease; RNA recognition motif, RRM, RNA binding domain, RBD, RNP, PARN, structural genomics; NMR {Mus musculus} SCOP: d.58.7.1 PDB: 2rok_A*
Probab=20.87 E-value=26 Score=28.75 Aligned_cols=53 Identities=15% Similarity=0.336 Sum_probs=38.5
Q ss_pred HHHhhcCCCCCCcEEEcCCCCeEEEeCCchhhhhhcccc-----cCCCChhHHHhhhcc
Q 018495 17 TYQMVNDPTTDSLISWGKANNSFIVVDPLDFSQRILPAY-----FKHNNFSSFVRQLNT 70 (355)
Q Consensus 17 Ly~mLed~~~~~iIsWs~~G~sFvV~d~~~F~~~VLP~y-----FKh~nfsSFvRQLN~ 70 (355)
|+++...=. .=.|+|-+|..+|||....+-++++|-.. |+-..|..|.-.|+.
T Consensus 32 I~~lFs~fg-gv~I~WidDTsAlvvf~~~~~a~~al~~i~k~~~y~i~ty~e~~~~l~~ 89 (100)
T 1whv_A 32 LYQLFSAFG-NIQISWIDDTSAFVSLSQPEQVQIAVNTSKYAESYRIQTYAEYVGKKQK 89 (100)
T ss_dssp HHHHHTTTC-SCCCEEEETTEEEEECSCHHHHHHHHHHHHHCCSSEEEEHHHHHHHHCC
T ss_pred HHHHhhccC-CEEEEEEcCCeEEEEecCHHHHHHHHHhcccCCceEEEEhHHhHHHHhc
Confidence 344444332 34599999999999999999999888733 677777777776643
No 178
>1l8d_A DNA double-strand break repair RAD50 ATPase; zinc finger, DNA repair, recombination, HOOK motif, replication; HET: DNA CIT; 2.20A {Pyrococcus furiosus} SCOP: h.4.12.1
Probab=20.75 E-value=3e+02 Score=21.38 Aligned_cols=42 Identities=10% Similarity=0.062 Sum_probs=25.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHH
Q 018495 128 EIVMEIARLRQEQKSLDEELQGMNKRLEATERRPEQMMAFLY 169 (355)
Q Consensus 128 ~L~~EIerLKreq~~L~qEL~~Lrqr~q~~EqrqqqMm~FLa 169 (355)
.....++..+.+...+..++..|+.++...+..++.+-..+.
T Consensus 61 ~~~~~i~~~~~~l~~l~~~i~~l~~~i~~l~~~~~~l~~~~~ 102 (112)
T 1l8d_A 61 HREELLSKYHLDLNNSKNTLAKLIDRKSELERELRRIDMEIK 102 (112)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 333455666666666666666666666666666655555554
No 179
>3tnu_B Keratin, type II cytoskeletal 5; coiled-coil, structural support, cytosolic protein; 3.00A {Homo sapiens}
Probab=20.57 E-value=2.1e+02 Score=23.43 Aligned_cols=29 Identities=17% Similarity=0.310 Sum_probs=21.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 018495 128 EIVMEIARLRQEQKSLDEELQGMNKRLEA 156 (355)
Q Consensus 128 ~L~~EIerLKreq~~L~qEL~~Lrqr~q~ 156 (355)
.|..||+.|+..+..|...|..++.+...
T Consensus 47 ~L~~el~~l~~~~~~LE~~l~e~e~~~~~ 75 (129)
T 3tnu_B 47 RLRAEIDNVKKQCANLQNAIADAEQRGEL 75 (129)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHhHHHHHHHHHHHHHHHHHH
Confidence 66777788888888888777777665543
No 180
>3mq7_A Bone marrow stromal antigen 2; HIV, antiviral protein; 2.28A {Homo sapiens} PDB: 3mqc_A 3mqb_A 3mkx_A 3nwh_A 2xg7_A* 2x7a_A
Probab=20.46 E-value=2.4e+02 Score=23.68 Aligned_cols=12 Identities=33% Similarity=0.697 Sum_probs=4.5
Q ss_pred HHHHHHHHHHHH
Q 018495 143 LDEELQGMNKRL 154 (355)
Q Consensus 143 L~qEL~~Lrqr~ 154 (355)
|..||.+|.+++
T Consensus 76 LqgEI~~Lnq~L 87 (121)
T 3mq7_A 76 LEGEITTLNHKL 87 (121)
T ss_dssp HHHHHHHHHHHH
T ss_pred HHHHHHHHHHHH
Confidence 333333333333
No 181
>2zvf_A Alanyl-tRNA synthetase; C-terminal, oligomerization domain, aminoacyl-tRNA synthetase, ATP-binding, cytoplasm, ligase, nucleotide-binding; 3.20A {Archaeoglobus fulgidus}
Probab=20.42 E-value=1.4e+02 Score=24.98 Aligned_cols=30 Identities=13% Similarity=0.271 Sum_probs=24.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 018495 127 EEIVMEIARLRQEQKSLDEELQGMNKRLEA 156 (355)
Q Consensus 127 ~~L~~EIerLKreq~~L~qEL~~Lrqr~q~ 156 (355)
.++...|++|..++..|..|+..|++++-.
T Consensus 28 ~~l~~~v~~l~~e~k~l~ke~~~l~~~~a~ 57 (171)
T 2zvf_A 28 AKLPKTVERFFEEWKDQRKEIERLKSVIAD 57 (171)
T ss_dssp TSHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 367788999999988888888888877644
No 182
>3q8t_A Beclin-1; autophagy, ATG14L uvrag, apoptosis; 1.90A {Rattus norvegicus}
Probab=20.20 E-value=2.3e+02 Score=22.43 Aligned_cols=26 Identities=15% Similarity=0.419 Sum_probs=11.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHH
Q 018495 128 EIVMEIARLRQEQKSLDEELQGMNKR 153 (355)
Q Consensus 128 ~L~~EIerLKreq~~L~qEL~~Lrqr 153 (355)
.+..++..|.++...|..||..++..
T Consensus 22 ~L~~eL~~lEke~~~l~~el~~le~E 47 (96)
T 3q8t_A 22 RLIQELEDVEKNRKVVAENLEKVQAE 47 (96)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhHHHHHHHHHHHHHH
Confidence 33444444444444444444444443
No 183
>1wlq_A Geminin; coiled-coil; 2.80A {Mus musculus} PDB: 2zxx_A*
Probab=20.06 E-value=3.3e+02 Score=21.53 Aligned_cols=30 Identities=20% Similarity=0.276 Sum_probs=22.2
Q ss_pred ChHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 018495 125 DDEEIVMEIARLRQEQKSLDEELQGMNKRL 154 (355)
Q Consensus 125 ~~~~L~~EIerLKreq~~L~qEL~~Lrqr~ 154 (355)
++..|..+|+.++.+...|..|...|+.-.
T Consensus 39 EN~~Lh~~ie~~~eEi~~Lk~en~~L~elA 68 (83)
T 1wlq_A 39 ENEKLHKEIEQKDSEIARLRKENKDLAEVA 68 (83)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHTHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 567777888888888888888777666543
Done!